Query 047355
Match_columns 312
No_of_seqs 241 out of 2191
Neff 10.7
Searched_HMMs 46136
Date Fri Mar 29 10:18:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047355.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047355hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0276 Vesicle coat complex C 100.0 3.6E-58 7.8E-63 388.8 28.9 299 6-304 2-300 (794)
2 KOG0271 Notchless-like WD40 re 100.0 2.1E-53 4.5E-58 341.2 27.0 284 13-301 111-479 (480)
3 KOG0272 U4/U6 small nuclear ri 100.0 1.4E-51 2.9E-56 334.4 24.1 283 16-302 174-459 (459)
4 KOG0286 G-protein beta subunit 100.0 3.4E-47 7.3E-52 295.7 31.6 293 5-301 43-343 (343)
5 KOG0279 G protein beta subunit 100.0 4.8E-45 1E-49 282.0 31.2 292 6-301 4-311 (315)
6 KOG0272 U4/U6 small nuclear ri 100.0 1.1E-46 2.5E-51 305.8 17.7 249 8-259 208-458 (459)
7 KOG0271 Notchless-like WD40 re 100.0 9.6E-44 2.1E-48 285.7 22.8 250 52-304 108-440 (480)
8 KOG0292 Vesicle coat complex C 100.0 4E-43 8.7E-48 307.9 27.0 289 11-303 3-322 (1202)
9 KOG0315 G-protein beta subunit 100.0 2.9E-42 6.3E-47 262.7 27.8 268 30-303 11-288 (311)
10 KOG0295 WD40 repeat-containing 100.0 1.1E-42 2.5E-47 277.7 26.4 291 9-301 100-404 (406)
11 KOG0284 Polyadenylation factor 100.0 7.9E-44 1.7E-48 288.1 18.1 282 17-303 96-380 (464)
12 KOG0273 Beta-transducin family 100.0 4.9E-41 1.1E-45 276.5 30.2 278 18-300 236-520 (524)
13 KOG0285 Pleiotropic regulator 100.0 3.5E-41 7.7E-46 268.9 25.8 289 9-303 143-439 (460)
14 cd00200 WD40 WD40 domain, foun 100.0 2E-39 4.4E-44 270.3 37.3 287 10-300 2-288 (289)
15 KOG0263 Transcription initiati 100.0 1.4E-41 2.9E-46 295.6 22.7 271 17-302 378-648 (707)
16 KOG0645 WD40 repeat protein [G 100.0 1.6E-39 3.5E-44 250.5 30.4 286 7-301 4-309 (312)
17 KOG0265 U5 snRNP-specific prot 100.0 1.1E-39 2.3E-44 254.8 28.2 285 10-299 40-334 (338)
18 KOG0291 WD40-repeat-containing 100.0 3E-39 6.5E-44 279.4 33.5 285 15-303 263-550 (893)
19 KOG0273 Beta-transducin family 100.0 6.2E-40 1.3E-44 270.0 26.6 285 13-303 174-482 (524)
20 KOG0319 WD40-repeat-containing 100.0 3.9E-40 8.4E-45 284.2 25.9 292 6-301 312-617 (775)
21 KOG0266 WD40 repeat-containing 100.0 4.7E-39 1E-43 284.3 32.8 283 17-303 159-454 (456)
22 KOG0281 Beta-TrCP (transducin 100.0 8.7E-41 1.9E-45 265.9 15.9 269 16-301 196-475 (499)
23 PLN00181 protein SPA1-RELATED; 100.0 1.2E-37 2.5E-42 294.2 40.0 282 13-300 479-790 (793)
24 KOG0286 G-protein beta subunit 100.0 9.9E-39 2.1E-43 248.6 26.7 239 16-259 96-343 (343)
25 KOG0315 G-protein beta subunit 100.0 8.5E-38 1.9E-42 238.3 28.4 264 13-281 36-308 (311)
26 KOG0318 WD40 repeat stress pro 100.0 1.9E-37 4.2E-42 258.5 32.4 292 11-303 141-560 (603)
27 KOG0316 Conserved WD40 repeat- 100.0 3.5E-38 7.5E-43 238.7 24.6 280 11-297 11-294 (307)
28 KOG0279 G protein beta subunit 100.0 9.6E-38 2.1E-42 241.6 27.1 252 51-307 7-266 (315)
29 KOG0296 Angio-associated migra 100.0 1.7E-37 3.8E-42 248.2 28.8 285 11-299 58-394 (399)
30 KOG0295 WD40 repeat-containing 100.0 5.9E-39 1.3E-43 256.5 19.0 253 53-308 102-369 (406)
31 KOG0313 Microtubule binding pr 100.0 4.3E-37 9.2E-42 247.1 26.9 281 15-304 103-419 (423)
32 KOG0263 Transcription initiati 100.0 1E-37 2.3E-42 271.4 23.4 225 34-262 426-650 (707)
33 KOG0284 Polyadenylation factor 100.0 1.1E-38 2.3E-43 258.4 14.9 250 8-260 129-379 (464)
34 KOG0306 WD40-repeat-containing 100.0 5.4E-37 1.2E-41 265.4 26.2 284 12-301 368-662 (888)
35 KOG0277 Peroxisomal targeting 100.0 5.8E-37 1.3E-41 234.5 23.0 280 21-302 12-308 (311)
36 KOG0310 Conserved WD40 repeat- 100.0 2.2E-36 4.7E-41 250.2 25.8 280 16-300 25-306 (487)
37 KOG0282 mRNA splicing factor [ 100.0 1.3E-37 2.7E-42 257.2 18.1 287 9-300 206-502 (503)
38 KOG0319 WD40-repeat-containing 100.0 2.8E-36 6.1E-41 260.5 26.0 288 19-309 283-583 (775)
39 KOG0293 WD40 repeat-containing 100.0 3.1E-36 6.8E-41 244.6 23.8 288 11-304 218-514 (519)
40 KOG0266 WD40 repeat-containing 100.0 2.1E-35 4.5E-40 261.2 28.6 252 9-261 195-454 (456)
41 KOG0291 WD40-repeat-containing 100.0 3.6E-34 7.9E-39 248.1 32.3 290 9-302 137-507 (893)
42 KOG0276 Vesicle coat complex C 100.0 3.2E-35 6.9E-40 249.9 22.7 247 54-303 8-257 (794)
43 KOG1407 WD40 repeat protein [F 100.0 3.8E-34 8.3E-39 219.8 25.8 278 10-294 13-293 (313)
44 KOG0275 Conserved WD40 repeat- 100.0 1.1E-35 2.5E-40 235.1 17.9 283 15-301 211-507 (508)
45 KOG0285 Pleiotropic regulator 100.0 5.7E-35 1.2E-39 233.5 22.0 247 53-305 145-391 (460)
46 KOG1446 Histone H3 (Lys4) meth 100.0 9.3E-33 2E-37 217.7 34.0 292 6-305 3-305 (311)
47 KOG0278 Serine/threonine kinas 100.0 1.8E-35 3.9E-40 225.9 17.4 287 12-305 9-299 (334)
48 KOG0288 WD40 repeat protein Ti 100.0 2.4E-35 5.1E-40 239.4 17.5 286 7-300 165-458 (459)
49 KOG0318 WD40 repeat stress pro 100.0 1.3E-32 2.8E-37 229.8 33.0 294 10-309 52-356 (603)
50 KOG0647 mRNA export protein (c 100.0 1.6E-33 3.6E-38 220.4 25.3 271 15-293 25-313 (347)
51 KOG0316 Conserved WD40 repeat- 100.0 1.1E-33 2.3E-38 214.4 23.1 244 52-303 10-257 (307)
52 KOG0645 WD40 repeat protein [G 100.0 4.3E-33 9.3E-38 215.1 26.7 238 15-261 59-311 (312)
53 KOG0265 U5 snRNP-specific prot 100.0 1.6E-33 3.4E-38 220.4 24.2 248 54-305 42-298 (338)
54 KOG0292 Vesicle coat complex C 100.0 4.4E-33 9.4E-38 245.1 29.5 249 9-261 43-321 (1202)
55 KOG0281 Beta-TrCP (transducin 100.0 3.2E-35 6.9E-40 234.3 13.0 228 60-303 198-428 (499)
56 KOG0282 mRNA splicing factor [ 100.0 1.3E-34 2.9E-39 239.3 16.8 251 7-259 248-503 (503)
57 KOG0268 Sof1-like rRNA process 100.0 1.8E-34 3.9E-39 230.9 16.8 284 12-305 61-347 (433)
58 KOG0293 WD40 repeat-containing 100.0 5.8E-34 1.3E-38 231.5 19.1 252 7-262 259-514 (519)
59 cd00200 WD40 WD40 domain, foun 100.0 4.8E-32 1E-36 225.8 31.3 245 11-259 45-289 (289)
60 KOG0296 Angio-associated migra 100.0 1E-32 2.2E-37 221.0 24.8 248 9-261 98-398 (399)
61 KOG0305 Anaphase promoting com 100.0 1.7E-32 3.7E-37 234.7 27.3 276 21-303 181-461 (484)
62 KOG0772 Uncharacterized conser 100.0 4.8E-33 1.1E-37 231.9 23.2 289 11-302 161-486 (641)
63 PLN00181 protein SPA1-RELATED; 100.0 6.1E-32 1.3E-36 255.4 33.8 261 38-303 457-738 (793)
64 KOG0277 Peroxisomal targeting 100.0 1.4E-33 3.1E-38 215.9 17.9 243 16-260 59-308 (311)
65 KOG1036 Mitotic spindle checkp 100.0 7.3E-32 1.6E-36 211.9 27.8 268 16-293 12-294 (323)
66 KOG0274 Cdc4 and related F-box 100.0 2.5E-32 5.4E-37 241.5 28.3 276 16-306 207-485 (537)
67 KOG0274 Cdc4 and related F-box 100.0 4.8E-32 1E-36 239.7 27.8 282 12-307 244-528 (537)
68 KOG0643 Translation initiation 100.0 3.1E-31 6.8E-36 204.5 27.2 285 13-302 6-316 (327)
69 KOG0294 WD40 repeat-containing 100.0 1.1E-31 2.3E-36 211.4 24.9 246 8-263 34-283 (362)
70 KOG0283 WD40 repeat-containing 100.0 2.4E-32 5.3E-37 239.8 23.3 286 11-304 260-577 (712)
71 KOG0301 Phospholipase A2-activ 100.0 7.9E-32 1.7E-36 231.7 24.9 282 6-303 3-288 (745)
72 KOG0289 mRNA splicing factor [ 100.0 3.1E-31 6.7E-36 216.8 26.0 279 18-299 220-502 (506)
73 KOG0306 WD40-repeat-containing 100.0 8.4E-31 1.8E-35 227.2 29.4 290 11-307 101-584 (888)
74 PTZ00421 coronin; Provisional 100.0 2E-30 4.3E-35 229.0 32.6 264 18-284 21-314 (493)
75 KOG0973 Histone transcription 100.0 4.1E-31 8.8E-36 237.8 28.3 286 13-300 8-352 (942)
76 KOG0275 Conserved WD40 repeat- 100.0 8.7E-33 1.9E-37 218.8 14.8 253 5-259 251-507 (508)
77 KOG0640 mRNA cleavage stimulat 100.0 3.7E-31 8E-36 208.2 23.2 290 12-304 107-427 (430)
78 KOG0299 U3 snoRNP-associated p 100.0 6.3E-31 1.4E-35 216.4 25.6 278 10-294 135-446 (479)
79 KOG0310 Conserved WD40 repeat- 100.0 3.9E-31 8.4E-36 219.2 24.3 245 9-259 60-307 (487)
80 KOG0641 WD40 repeat protein [G 100.0 4E-29 8.8E-34 188.8 31.0 282 17-303 32-349 (350)
81 PTZ00421 coronin; Provisional 100.0 4.4E-30 9.5E-35 226.9 29.7 229 12-243 70-315 (493)
82 KOG0308 Conserved WD40 repeat- 100.0 1.1E-31 2.5E-36 229.2 18.4 276 22-300 29-324 (735)
83 PTZ00420 coronin; Provisional 100.0 2.7E-29 5.8E-34 223.1 34.0 248 35-286 50-319 (568)
84 KOG0278 Serine/threonine kinas 100.0 4.4E-32 9.5E-37 207.4 13.4 248 9-264 51-300 (334)
85 KOG0308 Conserved WD40 repeat- 100.0 4E-31 8.7E-36 225.9 17.8 233 69-303 35-285 (735)
86 KOG0305 Anaphase promoting com 100.0 5.5E-30 1.2E-34 219.4 24.8 243 17-263 217-463 (484)
87 KOG0300 WD40 repeat-containing 100.0 9.8E-30 2.1E-34 200.9 22.3 290 5-300 136-473 (481)
88 PTZ00420 coronin; Provisional 100.0 3.7E-28 8E-33 215.9 33.7 224 77-303 50-293 (568)
89 KOG0313 Microtubule binding pr 100.0 1.8E-29 3.9E-34 203.3 21.6 247 9-261 136-418 (423)
90 KOG0643 Translation initiation 100.0 3.6E-29 7.7E-34 193.2 21.0 247 11-261 46-317 (327)
91 KOG0264 Nucleosome remodeling 100.0 2.7E-29 5.8E-34 206.7 21.4 248 14-262 121-405 (422)
92 KOG0264 Nucleosome remodeling 100.0 3.6E-29 7.8E-34 205.9 21.9 246 57-303 122-404 (422)
93 KOG0267 Microtubule severing p 100.0 4.2E-31 9E-36 228.2 10.6 258 29-296 4-261 (825)
94 KOG1446 Histone H3 (Lys4) meth 100.0 1.5E-27 3.2E-32 188.5 29.0 248 50-303 5-262 (311)
95 KOG2055 WD40 repeat protein [G 100.0 2.9E-28 6.3E-33 200.9 24.8 282 17-302 213-511 (514)
96 KOG1332 Vesicle coat complex C 100.0 6.3E-29 1.4E-33 189.5 17.9 248 57-304 9-287 (299)
97 KOG0288 WD40 repeat protein Ti 100.0 5.9E-29 1.3E-33 202.4 18.6 247 7-259 209-459 (459)
98 KOG0289 mRNA splicing factor [ 100.0 6.7E-28 1.4E-32 197.4 24.0 240 61-302 221-461 (506)
99 KOG0640 mRNA cleavage stimulat 100.0 4.3E-29 9.3E-34 196.6 16.1 248 9-259 164-424 (430)
100 KOG0299 U3 snoRNP-associated p 100.0 3.5E-28 7.7E-33 200.3 21.5 238 15-259 200-454 (479)
101 KOG0300 WD40 repeat-containing 100.0 1.3E-28 2.9E-33 194.6 17.7 250 9-262 182-477 (481)
102 KOG1408 WD40 repeat protein [F 100.0 4.3E-28 9.4E-33 209.6 22.2 289 13-303 365-713 (1080)
103 KOG1274 WD40 repeat protein [G 100.0 1.1E-26 2.3E-31 205.9 28.7 279 15-301 11-298 (933)
104 KOG1407 WD40 repeat protein [F 100.0 2.3E-27 5.1E-32 182.6 20.8 244 53-302 14-260 (313)
105 KOG0269 WD40 repeat-containing 100.0 9.9E-28 2.2E-32 208.9 19.3 277 17-298 39-335 (839)
106 KOG0267 Microtubule severing p 100.0 5E-29 1.1E-33 215.4 10.8 244 6-253 17-260 (825)
107 KOG0646 WD40 repeat protein [G 100.0 9.1E-27 2E-31 192.4 22.5 252 31-285 52-331 (476)
108 KOG0973 Histone transcription 100.0 8.4E-27 1.8E-31 210.2 23.8 250 12-263 64-357 (942)
109 KOG2096 WD40 repeat protein [G 100.0 5.6E-26 1.2E-30 179.7 25.5 278 12-295 81-395 (420)
110 KOG1539 WD repeat protein [Gen 100.0 7.1E-26 1.5E-30 198.8 28.5 287 13-303 240-648 (910)
111 KOG2048 WD40 repeat protein [G 100.0 2.1E-25 4.5E-30 192.0 30.4 281 16-303 24-319 (691)
112 KOG0301 Phospholipase A2-activ 100.0 1.1E-26 2.4E-31 200.2 22.4 234 13-261 53-288 (745)
113 KOG1332 Vesicle coat complex C 100.0 4.4E-27 9.5E-32 179.5 17.5 251 11-261 5-286 (299)
114 KOG0641 WD40 repeat protein [G 100.0 3.7E-25 8E-30 167.5 27.7 246 11-261 83-349 (350)
115 KOG0772 Uncharacterized conser 100.0 4.8E-27 1E-31 196.3 19.2 241 52-293 160-429 (641)
116 KOG4328 WD40 protein [Function 100.0 2.8E-26 6E-31 189.1 22.4 289 12-303 181-495 (498)
117 KOG4283 Transcription-coupled 100.0 1.1E-25 2.4E-30 176.3 23.8 283 15-302 41-364 (397)
118 KOG0639 Transducin-like enhanc 100.0 3.1E-26 6.8E-31 191.0 20.9 273 15-297 417-698 (705)
119 KOG2106 Uncharacterized conser 99.9 4.5E-24 9.7E-29 178.2 32.9 274 17-300 200-518 (626)
120 KOG0294 WD40 repeat-containing 99.9 5.7E-25 1.2E-29 173.7 25.6 263 31-303 3-281 (362)
121 KOG1539 WD repeat protein [Gen 99.9 1.2E-24 2.5E-29 191.3 28.6 294 11-304 196-607 (910)
122 KOG0269 WD40 repeat-containing 99.9 9.2E-27 2E-31 202.9 14.8 240 19-260 89-339 (839)
123 KOG0283 WD40 repeat-containing 99.9 1.7E-25 3.7E-30 197.0 21.6 209 8-219 360-576 (712)
124 KOG2106 Uncharacterized conser 99.9 6.7E-24 1.5E-28 177.2 29.7 287 8-300 95-474 (626)
125 KOG1063 RNA polymerase II elon 99.9 1.5E-24 3.3E-29 187.1 26.5 295 8-305 258-650 (764)
126 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 3.1E-23 6.8E-28 175.0 34.1 269 30-307 2-283 (300)
127 KOG2445 Nuclear pore complex c 99.9 1.8E-24 4E-29 170.3 24.2 246 57-303 11-318 (361)
128 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.5E-23 3.3E-28 176.9 31.9 260 18-283 31-300 (300)
129 KOG0650 WD40 repeat nucleolar 99.9 9E-25 2E-29 185.7 23.1 291 4-300 387-732 (733)
130 KOG0646 WD40 repeat protein [G 99.9 1.3E-24 2.8E-29 179.7 23.2 265 39-307 18-311 (476)
131 KOG0270 WD40 repeat-containing 99.9 3.7E-25 8E-30 181.9 19.7 235 29-265 192-453 (463)
132 KOG0647 mRNA export protein (c 99.9 2.8E-24 6E-29 168.9 23.3 239 58-303 26-281 (347)
133 KOG2445 Nuclear pore complex c 99.9 8.2E-24 1.8E-28 166.7 25.9 248 12-260 8-317 (361)
134 KOG1408 WD40 repeat protein [F 99.9 6E-25 1.3E-29 190.4 19.1 244 17-262 459-714 (1080)
135 KOG0321 WD40 repeat-containing 99.9 5.2E-24 1.1E-28 182.3 23.1 284 21-305 53-393 (720)
136 KOG0302 Ribosome Assembly prot 99.9 3.1E-24 6.8E-29 173.2 20.0 265 6-298 140-434 (440)
137 KOG1445 Tumor-specific antigen 99.9 2.5E-24 5.3E-29 184.4 19.1 133 13-145 75-214 (1012)
138 KOG4378 Nuclear protein COP1 [ 99.9 6.1E-24 1.3E-28 177.1 20.6 264 19-285 36-305 (673)
139 KOG0321 WD40 repeat-containing 99.9 6E-24 1.3E-28 181.9 20.9 273 11-284 94-428 (720)
140 KOG1036 Mitotic spindle checkp 99.9 3.8E-23 8.2E-28 163.0 23.2 237 58-304 12-263 (323)
141 KOG1273 WD40 repeat protein [G 99.9 7.1E-23 1.5E-27 162.0 22.5 276 20-303 26-322 (405)
142 KOG1273 WD40 repeat protein [G 99.9 4.2E-23 9.1E-28 163.3 21.1 237 62-301 26-278 (405)
143 KOG4283 Transcription-coupled 99.9 8.4E-24 1.8E-28 165.8 16.7 208 96-304 38-277 (397)
144 KOG0644 Uncharacterized conser 99.9 6.7E-25 1.5E-29 192.8 11.4 281 6-301 179-466 (1113)
145 COG2319 FOG: WD40 repeat [Gene 99.9 1.1E-20 2.4E-25 165.8 37.3 289 12-304 60-360 (466)
146 KOG0642 Cell-cycle nuclear pro 99.9 5.4E-24 1.2E-28 179.9 14.7 252 12-267 289-567 (577)
147 KOG0270 WD40 repeat-containing 99.9 5.4E-23 1.2E-27 169.3 20.0 273 21-300 129-446 (463)
148 KOG1034 Transcriptional repres 99.9 3.7E-23 8E-28 164.4 18.3 242 16-260 88-382 (385)
149 KOG2919 Guanine nucleotide-bin 99.9 2.7E-22 5.8E-27 159.2 22.9 274 20-296 52-363 (406)
150 KOG1274 WD40 repeat protein [G 99.9 2.7E-22 5.8E-27 178.3 25.5 241 57-303 11-262 (933)
151 KOG0307 Vesicle coat complex C 99.9 4.9E-24 1.1E-28 193.4 14.6 287 18-306 7-330 (1049)
152 KOG0639 Transducin-like enhanc 99.9 4.3E-23 9.2E-28 172.4 16.7 238 16-260 464-703 (705)
153 KOG1034 Transcriptional repres 99.9 7.1E-22 1.5E-26 157.1 22.7 282 13-300 34-380 (385)
154 KOG0268 Sof1-like rRNA process 99.9 4.8E-23 1E-27 165.6 15.7 245 8-263 100-347 (433)
155 KOG0642 Cell-cycle nuclear pro 99.9 3.6E-23 7.8E-28 175.0 15.0 253 54-309 289-567 (577)
156 KOG2096 WD40 repeat protein [G 99.9 1E-21 2.2E-26 155.7 21.7 238 54-295 81-353 (420)
157 KOG4227 WD40 repeat protein [G 99.9 1.1E-21 2.3E-26 159.7 22.0 293 9-302 48-386 (609)
158 KOG0307 Vesicle coat complex C 99.9 3E-23 6.5E-28 188.3 14.1 245 17-263 64-329 (1049)
159 KOG1063 RNA polymerase II elon 99.9 5.3E-21 1.2E-25 165.4 26.6 293 4-299 41-433 (764)
160 KOG1007 WD repeat protein TSSC 99.9 1E-21 2.2E-26 153.8 20.1 250 10-262 56-362 (370)
161 KOG4378 Nuclear protein COP1 [ 99.9 2.7E-22 5.8E-27 167.5 16.5 221 20-243 82-305 (673)
162 KOG2048 WD40 repeat protein [G 99.9 2.4E-20 5.2E-25 161.0 27.8 240 16-262 68-320 (691)
163 COG2319 FOG: WD40 repeat [Gene 99.9 3.4E-19 7.3E-24 156.4 36.2 289 10-304 148-443 (466)
164 KOG1517 Guanine nucleotide bin 99.9 6.7E-21 1.4E-25 171.7 24.3 280 18-300 1065-1378(1387)
165 KOG1009 Chromatin assembly com 99.9 1.8E-20 4E-25 152.9 23.2 279 17-298 13-367 (434)
166 KOG0322 G-protein beta subunit 99.9 8.8E-22 1.9E-26 152.2 14.2 280 12-301 9-321 (323)
167 KOG4328 WD40 protein [Function 99.9 2.4E-21 5.1E-26 160.2 16.9 215 86-302 171-398 (498)
168 KOG0302 Ribosome Assembly prot 99.9 4.3E-21 9.2E-26 155.2 17.5 201 99-301 149-376 (440)
169 KOG1188 WD40 repeat protein [G 99.9 1.1E-20 2.4E-25 151.1 19.3 270 30-301 41-344 (376)
170 KOG1587 Cytoplasmic dynein int 99.9 1.1E-19 2.4E-24 160.4 24.6 261 39-301 222-514 (555)
171 KOG1538 Uncharacterized conser 99.9 8.8E-20 1.9E-24 157.6 23.3 270 19-298 14-288 (1081)
172 KOG0649 WD40 repeat protein [G 99.9 5.9E-19 1.3E-23 135.3 24.5 269 16-298 9-311 (325)
173 KOG1007 WD repeat protein TSSC 99.9 1.2E-19 2.6E-24 142.2 20.6 261 37-300 38-358 (370)
174 KOG2055 WD40 repeat protein [G 99.9 1.9E-19 4E-24 149.3 21.0 233 59-295 213-457 (514)
175 KOG1524 WD40 repeat-containing 99.9 2E-19 4.2E-24 151.9 20.7 274 4-300 2-283 (737)
176 KOG1334 WD40 repeat protein [G 99.8 7.8E-20 1.7E-24 152.5 15.6 296 6-303 131-466 (559)
177 KOG2919 Guanine nucleotide-bin 99.8 2.4E-19 5.1E-24 142.7 17.3 233 17-252 104-361 (406)
178 KOG2110 Uncharacterized conser 99.8 7.3E-18 1.6E-22 136.4 24.8 233 62-303 8-248 (391)
179 KOG0290 Conserved WD40 repeat- 99.8 4.4E-18 9.4E-23 133.7 22.7 279 19-300 46-363 (364)
180 PRK11028 6-phosphogluconolacto 99.8 5.8E-17 1.2E-21 138.9 30.7 263 34-303 7-304 (330)
181 KOG1188 WD40 repeat protein [G 99.8 7.5E-19 1.6E-23 140.7 16.9 253 8-260 61-345 (376)
182 KOG2111 Uncharacterized conser 99.8 1.6E-16 3.4E-21 126.4 29.0 237 19-262 7-257 (346)
183 KOG0303 Actin-binding protein 99.8 4.4E-18 9.6E-23 138.7 18.5 225 13-242 77-320 (472)
184 KOG1587 Cytoplasmic dynein int 99.8 1.3E-17 2.9E-22 147.3 22.3 244 17-262 242-517 (555)
185 KOG0303 Actin-binding protein 99.8 4.6E-18 1E-22 138.6 17.8 204 96-303 76-295 (472)
186 KOG0650 WD40 repeat nucleolar 99.8 8.5E-18 1.8E-22 143.7 19.1 244 53-302 394-679 (733)
187 KOG0771 Prolactin regulatory e 99.8 3.6E-18 7.7E-23 140.4 16.2 196 63-262 148-355 (398)
188 PRK01742 tolB translocation pr 99.8 1.5E-17 3.2E-22 147.0 21.3 237 38-285 183-427 (429)
189 KOG1517 Guanine nucleotide bin 99.8 1.5E-17 3.3E-22 150.4 20.9 243 17-263 1109-1383(1387)
190 KOG1310 WD40 repeat protein [G 99.8 4.8E-18 1.1E-22 143.9 15.9 241 6-265 39-307 (758)
191 KOG0290 Conserved WD40 repeat- 99.8 3.3E-17 7.2E-22 128.8 18.9 234 15-251 94-356 (364)
192 KOG1963 WD40 repeat protein [G 99.8 8.1E-16 1.7E-20 137.1 29.6 287 15-304 203-539 (792)
193 PRK11028 6-phosphogluconolacto 99.8 1.1E-15 2.5E-20 130.9 29.1 259 17-281 34-327 (330)
194 KOG0649 WD40 repeat protein [G 99.8 4.1E-16 9E-21 119.8 22.8 230 63-304 14-284 (325)
195 KOG1538 Uncharacterized conser 99.8 4.4E-17 9.5E-22 141.2 18.9 229 61-300 14-249 (1081)
196 PF02239 Cytochrom_D1: Cytochr 99.8 2.8E-15 6E-20 128.9 28.5 279 20-300 39-344 (369)
197 KOG3881 Uncharacterized conser 99.8 4.2E-16 9.1E-21 127.2 21.5 265 13-286 51-344 (412)
198 KOG1009 Chromatin assembly com 99.8 2E-16 4.3E-21 129.5 19.5 258 6-265 54-376 (434)
199 KOG1272 WD40-repeat-containing 99.8 1.3E-17 2.9E-22 138.6 12.7 275 19-304 131-410 (545)
200 KOG2111 Uncharacterized conser 99.8 1.6E-15 3.4E-20 120.8 23.5 233 62-303 8-256 (346)
201 KOG2110 Uncharacterized conser 99.8 3.1E-15 6.6E-20 121.4 25.5 235 17-262 5-249 (391)
202 KOG0771 Prolactin regulatory e 99.7 5.8E-16 1.3E-20 127.5 21.2 191 105-299 148-350 (398)
203 KOG1963 WD40 repeat protein [G 99.7 5.6E-15 1.2E-19 131.8 26.7 280 16-303 15-322 (792)
204 KOG1445 Tumor-specific antigen 99.7 8.8E-17 1.9E-21 138.6 14.2 225 18-243 628-871 (1012)
205 KOG1523 Actin-related protein 99.7 1.2E-15 2.6E-20 121.5 17.5 201 100-303 9-236 (361)
206 PRK01742 tolB translocation pr 99.7 2E-15 4.4E-20 133.5 20.8 220 12-242 198-426 (429)
207 KOG0644 Uncharacterized conser 99.7 7.5E-18 1.6E-22 149.0 5.0 234 54-300 185-423 (1113)
208 KOG1524 WD40 repeat-containing 99.7 1.1E-15 2.4E-20 129.4 17.1 207 30-257 76-282 (737)
209 KOG0322 G-protein beta subunit 99.7 1.5E-15 3.3E-20 118.0 15.9 238 16-260 55-322 (323)
210 KOG1523 Actin-related protein 99.7 9.4E-15 2E-19 116.5 20.0 228 54-284 5-260 (361)
211 KOG1272 WD40-repeat-containing 99.7 1.6E-16 3.6E-21 132.2 9.5 234 61-305 131-364 (545)
212 KOG1240 Protein kinase contain 99.7 7E-14 1.5E-18 128.9 24.4 251 11-262 1042-1335(1431)
213 KOG4227 WD40 repeat protein [G 99.6 4E-14 8.7E-19 115.9 19.6 241 15-259 103-385 (609)
214 KOG2321 WD40 repeat protein [G 99.6 5.3E-14 1.1E-18 120.3 20.8 246 15-263 49-345 (703)
215 KOG1240 Protein kinase contain 99.6 1.4E-13 2.9E-18 127.1 24.1 256 44-302 1034-1333(1431)
216 KOG1310 WD40 repeat protein [G 99.6 3.2E-15 7E-20 127.0 12.6 167 52-219 43-231 (758)
217 PRK02889 tolB translocation pr 99.6 1.8E-13 4E-18 121.0 23.5 237 39-284 176-425 (427)
218 KOG4497 Uncharacterized conser 99.6 9.8E-13 2.1E-17 105.6 23.9 278 17-302 48-431 (447)
219 KOG1354 Serine/threonine prote 99.6 5.2E-13 1.1E-17 107.8 20.5 280 15-298 23-430 (433)
220 PRK03629 tolB translocation pr 99.6 2.1E-12 4.6E-17 114.2 26.5 234 40-284 180-428 (429)
221 PRK03629 tolB translocation pr 99.6 7.3E-13 1.6E-17 117.1 22.8 219 13-241 194-427 (429)
222 KOG2394 WD40 protein DMR-N9 [G 99.6 1.3E-13 2.9E-18 117.0 15.8 197 26-240 182-383 (636)
223 KOG1334 WD40 repeat protein [G 99.6 9.6E-14 2.1E-18 116.5 14.7 249 53-303 136-424 (559)
224 PRK05137 tolB translocation pr 99.6 5.7E-12 1.2E-16 111.9 26.6 233 40-284 183-433 (435)
225 PRK04922 tolB translocation pr 99.6 1.8E-12 4E-17 114.9 23.1 234 39-283 184-432 (433)
226 PRK05137 tolB translocation pr 99.6 4.7E-12 1E-16 112.5 25.4 205 81-294 182-397 (435)
227 PRK02889 tolB translocation pr 99.6 1.4E-12 3E-17 115.4 21.8 222 13-242 191-425 (427)
228 PF10282 Lactonase: Lactonase, 99.5 2.3E-10 5.1E-15 98.4 34.5 266 16-281 35-345 (345)
229 KOG2139 WD40 repeat protein [G 99.5 9.3E-12 2E-16 101.3 22.9 257 18-298 141-426 (445)
230 PF02239 Cytochrom_D1: Cytochr 99.5 4.7E-11 1E-15 102.9 28.8 261 33-300 10-299 (369)
231 KOG2394 WD40 protein DMR-N9 [G 99.5 1.7E-13 3.7E-18 116.4 13.2 170 111-283 183-384 (636)
232 PRK04922 tolB translocation pr 99.5 4.8E-12 1E-16 112.3 22.6 205 81-294 184-399 (433)
233 PF08662 eIF2A: Eukaryotic tra 99.5 2.7E-12 6E-17 100.7 18.3 153 106-267 10-184 (194)
234 KOG4497 Uncharacterized conser 99.5 1.1E-11 2.4E-16 99.6 21.6 273 22-304 13-392 (447)
235 KOG1064 RAVE (regulator of V-A 99.5 1.1E-13 2.4E-18 131.7 12.0 197 16-228 2207-2407(2439)
236 KOG0974 WD-repeat protein WDR6 99.5 1.8E-12 4E-17 118.0 19.1 262 30-303 18-288 (967)
237 KOG1409 Uncharacterized conser 99.5 2.6E-12 5.6E-17 103.7 17.2 249 5-262 12-271 (404)
238 KOG2139 WD40 repeat protein [G 99.5 7.1E-12 1.5E-16 101.9 18.7 196 102-303 99-310 (445)
239 KOG0280 Uncharacterized conser 99.5 2.2E-11 4.8E-16 96.5 20.3 261 38-301 45-331 (339)
240 KOG0974 WD-repeat protein WDR6 99.5 3.6E-12 7.8E-17 116.1 16.8 195 19-219 89-288 (967)
241 PF08662 eIF2A: Eukaryotic tra 99.5 1.5E-11 3.3E-16 96.4 18.3 120 168-294 38-164 (194)
242 KOG3881 Uncharacterized conser 99.4 4.6E-11 1E-15 98.1 20.3 239 59-300 55-317 (412)
243 KOG0280 Uncharacterized conser 99.4 2.5E-11 5.4E-16 96.2 17.8 242 19-261 71-333 (339)
244 TIGR02800 propeller_TolB tol-p 99.4 1E-10 2.2E-15 103.6 24.1 207 80-295 169-386 (417)
245 KOG4547 WD40 repeat-containing 99.4 3.8E-11 8.3E-16 103.4 19.8 189 111-304 3-221 (541)
246 PF10282 Lactonase: Lactonase, 99.4 2.2E-08 4.7E-13 86.3 37.0 267 32-300 2-319 (345)
247 KOG1409 Uncharacterized conser 99.4 2.4E-11 5.3E-16 98.2 16.2 243 16-262 67-395 (404)
248 TIGR02800 propeller_TolB tol-p 99.4 3.2E-10 7E-15 100.5 24.8 229 40-279 171-414 (417)
249 TIGR02658 TTQ_MADH_Hv methylam 99.4 9.7E-09 2.1E-13 87.0 32.1 262 28-299 11-326 (352)
250 TIGR02658 TTQ_MADH_Hv methylam 99.4 3.8E-09 8.2E-14 89.4 29.0 241 25-272 53-341 (352)
251 KOG4547 WD40 repeat-containing 99.4 2.5E-10 5.3E-15 98.5 22.1 211 26-261 2-220 (541)
252 PRK00178 tolB translocation pr 99.4 8.6E-10 1.9E-14 98.1 26.4 235 40-284 180-428 (430)
253 PRK04792 tolB translocation pr 99.4 7E-10 1.5E-14 98.7 24.8 234 40-284 199-447 (448)
254 TIGR03300 assembly_YfgL outer 99.4 5E-09 1.1E-13 91.6 29.8 258 28-299 104-375 (377)
255 KOG4714 Nucleoporin [Nuclear s 99.3 1.7E-11 3.7E-16 95.5 11.6 149 28-176 100-255 (319)
256 KOG1064 RAVE (regulator of V-A 99.3 8.7E-12 1.9E-16 119.2 11.9 199 58-273 2207-2410(2439)
257 PRK01029 tolB translocation pr 99.3 2.1E-09 4.5E-14 95.0 26.1 242 39-286 165-427 (428)
258 KOG2321 WD40 repeat protein [G 99.3 1.1E-10 2.3E-15 100.4 15.9 196 22-220 138-344 (703)
259 PRK04792 tolB translocation pr 99.3 6.2E-10 1.3E-14 99.0 21.6 218 14-241 214-446 (448)
260 PRK00178 tolB translocation pr 99.3 1.7E-09 3.7E-14 96.1 24.2 204 82-294 180-394 (430)
261 TIGR03300 assembly_YfgL outer 99.3 1.7E-08 3.8E-13 88.2 27.9 263 28-301 64-336 (377)
262 KOG2315 Predicted translation 99.3 6E-09 1.3E-13 89.6 23.9 271 19-299 75-380 (566)
263 PLN02919 haloacid dehalogenase 99.3 3.3E-08 7.1E-13 96.1 31.2 239 21-265 571-892 (1057)
264 KOG4190 Uncharacterized conser 99.3 2E-11 4.4E-16 104.6 8.2 204 94-301 728-945 (1034)
265 COG2706 3-carboxymuconate cycl 99.3 1.6E-07 3.4E-12 77.2 30.2 269 13-282 35-345 (346)
266 KOG3914 WD repeat protein WDR4 99.2 3E-10 6.5E-15 93.8 13.0 161 19-183 64-231 (390)
267 KOG4190 Uncharacterized conser 99.2 8.4E-11 1.8E-15 100.9 10.0 237 54-299 730-984 (1034)
268 KOG0309 Conserved WD40 repeat- 99.2 3.2E-10 6.8E-15 100.4 12.9 283 17-303 24-339 (1081)
269 PRK01029 tolB translocation pr 99.2 2E-08 4.4E-13 88.8 24.2 223 15-243 182-426 (428)
270 KOG1354 Serine/threonine prote 99.2 2.6E-09 5.5E-14 86.8 16.6 239 59-301 25-357 (433)
271 KOG2041 WD40 repeat protein [G 99.2 4.2E-09 9.2E-14 93.2 18.8 279 16-300 13-334 (1189)
272 PLN02919 haloacid dehalogenase 99.1 4E-07 8.6E-12 88.8 31.9 235 64-304 572-889 (1057)
273 KOG4532 WD40-like repeat conta 99.1 4.8E-08 1E-12 77.0 20.0 228 30-261 85-331 (344)
274 COG5170 CDC55 Serine/threonine 99.1 9.3E-09 2E-13 82.6 16.0 242 16-259 25-365 (460)
275 KOG0309 Conserved WD40 repeat- 99.1 1.3E-09 2.7E-14 96.7 11.6 243 19-262 69-340 (1081)
276 KOG1912 WD40 repeat protein [G 99.1 1.9E-07 4.2E-12 83.7 25.0 288 5-293 43-487 (1062)
277 PF04762 IKI3: IKI3 family; I 99.1 1E-06 2.2E-11 84.5 31.0 281 16-304 74-457 (928)
278 PF13360 PQQ_2: PQQ-like domai 99.0 8.1E-07 1.8E-11 72.4 26.4 219 38-267 2-236 (238)
279 PF08450 SGL: SMP-30/Gluconola 99.0 3.2E-06 7E-11 69.3 29.6 217 22-248 4-242 (246)
280 COG5354 Uncharacterized protei 99.0 3.3E-07 7.1E-12 78.4 23.0 264 16-290 31-332 (561)
281 KOG2041 WD40 repeat protein [G 99.0 7.5E-08 1.6E-12 85.6 19.6 247 4-257 58-333 (1189)
282 KOG4532 WD40-like repeat conta 99.0 1.8E-07 3.9E-12 73.9 19.6 193 69-267 82-288 (344)
283 PF00400 WD40: WD domain, G-be 99.0 1.7E-09 3.8E-14 61.2 6.3 39 221-259 1-39 (39)
284 PF15492 Nbas_N: Neuroblastoma 99.0 1.9E-06 4.2E-11 68.9 25.3 233 23-270 3-268 (282)
285 COG5354 Uncharacterized protei 99.0 4.6E-07 9.9E-12 77.6 23.0 269 18-296 72-382 (561)
286 KOG1912 WD40 repeat protein [G 99.0 1.5E-07 3.2E-12 84.4 20.1 240 19-261 17-304 (1062)
287 KOG4714 Nucleoporin [Nuclear s 99.0 5.8E-08 1.3E-12 76.2 15.0 198 20-220 39-255 (319)
288 KOG2314 Translation initiation 98.9 9.7E-07 2.1E-11 76.4 23.1 275 19-298 251-562 (698)
289 KOG2695 WD40 repeat protein [G 98.9 6.1E-09 1.3E-13 84.7 9.2 164 75-241 228-402 (425)
290 KOG1832 HIV-1 Vpr-binding prot 98.9 1.2E-09 2.7E-14 98.7 4.9 220 50-289 1092-1317(1516)
291 PRK11138 outer membrane biogen 98.9 3.3E-06 7.2E-11 74.3 26.5 256 29-299 120-390 (394)
292 KOG0882 Cyclophilin-related pe 98.9 1.9E-08 4.2E-13 84.5 11.4 235 58-296 8-299 (558)
293 KOG2695 WD40 repeat protein [G 98.9 8.7E-09 1.9E-13 83.8 8.8 161 117-282 228-401 (425)
294 KOG3914 WD repeat protein WDR4 98.9 4.8E-08 1E-12 81.0 13.1 159 63-228 66-232 (390)
295 KOG2315 Predicted translation 98.9 6.1E-06 1.3E-10 71.6 25.9 274 17-300 34-341 (566)
296 PF04762 IKI3: IKI3 family; I 98.9 3.9E-06 8.6E-11 80.6 27.6 262 16-294 208-507 (928)
297 PRK04043 tolB translocation pr 98.9 6.4E-06 1.4E-10 72.6 26.8 210 40-261 170-400 (419)
298 PRK04043 tolB translocation pr 98.9 3.4E-06 7.4E-11 74.3 24.8 202 81-294 169-388 (419)
299 KOG2314 Translation initiation 98.9 1.9E-06 4.1E-11 74.7 22.0 263 21-294 214-513 (698)
300 PF07433 DUF1513: Protein of u 98.9 2.5E-05 5.5E-10 64.3 27.5 247 17-297 4-279 (305)
301 COG2706 3-carboxymuconate cycl 98.8 3.5E-05 7.7E-10 63.7 30.1 266 38-306 15-325 (346)
302 PF00400 WD40: WD domain, G-be 98.8 1.4E-08 3.1E-13 57.4 6.0 38 92-129 2-39 (39)
303 KOG1275 PAB-dependent poly(A) 98.8 1.3E-07 2.8E-12 86.2 14.7 183 28-217 146-340 (1118)
304 PRK11138 outer membrane biogen 98.8 6.7E-06 1.5E-10 72.3 25.1 262 28-299 68-349 (394)
305 COG4946 Uncharacterized protei 98.8 9.1E-06 2E-10 69.4 23.2 214 68-293 275-508 (668)
306 COG4946 Uncharacterized protei 98.8 1.4E-05 3E-10 68.3 23.9 138 15-155 357-499 (668)
307 COG5170 CDC55 Serine/threonine 98.8 5.3E-07 1.1E-11 72.7 14.6 237 60-300 27-364 (460)
308 PF13360 PQQ_2: PQQ-like domai 98.7 5E-05 1.1E-09 61.8 25.6 213 80-303 2-230 (238)
309 PF08450 SGL: SMP-30/Gluconola 98.7 9.2E-05 2E-09 60.7 32.0 218 64-292 4-244 (246)
310 KOG1645 RING-finger-containing 98.7 2.2E-06 4.8E-11 71.5 17.1 253 5-261 181-461 (463)
311 KOG1275 PAB-dependent poly(A) 98.6 1.1E-06 2.4E-11 80.3 14.6 182 113-303 147-342 (1118)
312 KOG0882 Cyclophilin-related pe 98.6 5.3E-07 1.1E-11 76.1 11.7 200 99-303 7-231 (558)
313 PF15492 Nbas_N: Neuroblastoma 98.6 2.3E-05 5.1E-10 62.8 20.3 195 19-228 45-268 (282)
314 KOG1832 HIV-1 Vpr-binding prot 98.6 3.9E-08 8.5E-13 89.2 4.5 218 11-248 1095-1318(1516)
315 KOG2114 Vacuolar assembly/sort 98.6 1.5E-05 3.2E-10 72.7 19.8 207 23-234 29-259 (933)
316 KOG3617 WD40 and TPR repeat-co 98.6 4E-06 8.7E-11 76.3 15.6 109 21-131 19-131 (1416)
317 KOG2114 Vacuolar assembly/sort 98.5 8.7E-05 1.9E-09 67.9 23.9 202 64-270 28-252 (933)
318 KOG1645 RING-finger-containing 98.5 1.8E-05 3.8E-10 66.3 17.7 99 41-140 175-275 (463)
319 KOG1920 IkappaB kinase complex 98.5 5.1E-05 1.1E-09 71.9 22.3 234 59-302 68-321 (1265)
320 PF08596 Lgl_C: Lethal giant l 98.5 0.00012 2.7E-09 63.7 23.6 275 19-303 3-336 (395)
321 PF14583 Pectate_lyase22: Olig 98.4 0.00071 1.5E-08 57.7 27.7 268 24-296 42-374 (386)
322 KOG2066 Vacuolar assembly/sort 98.4 2E-05 4.4E-10 71.4 16.6 183 16-219 38-233 (846)
323 KOG1920 IkappaB kinase complex 98.4 0.00018 4E-09 68.3 23.2 268 17-300 68-362 (1265)
324 cd00216 PQQ_DH Dehydrogenases 98.3 0.00059 1.3E-08 61.8 24.4 262 29-299 61-420 (488)
325 KOG4649 PQQ (pyrrolo-quinoline 98.3 0.00099 2.2E-08 53.1 24.4 100 28-127 62-161 (354)
326 PF11768 DUF3312: Protein of u 98.3 4E-05 8.6E-10 67.5 15.3 115 17-133 205-331 (545)
327 PF00780 CNH: CNH domain; Int 98.3 0.0015 3.2E-08 54.5 26.1 231 26-272 4-266 (275)
328 PF00930 DPPIV_N: Dipeptidyl p 98.3 0.002 4.4E-08 55.8 28.6 264 26-293 1-347 (353)
329 KOG2066 Vacuolar assembly/sort 98.3 0.00012 2.6E-09 66.6 18.1 154 13-175 54-233 (846)
330 cd00216 PQQ_DH Dehydrogenases 98.3 0.002 4.4E-08 58.3 26.1 232 30-271 111-434 (488)
331 PF06433 Me-amine-dh_H: Methyl 98.2 0.0024 5.2E-08 53.6 25.5 246 20-272 38-331 (342)
332 PF04053 Coatomer_WDAD: Coatom 98.2 0.00083 1.8E-08 59.5 20.5 185 96-302 27-222 (443)
333 PRK02888 nitrous-oxide reducta 98.1 0.0023 4.9E-08 58.1 22.6 264 32-303 69-404 (635)
334 PF07433 DUF1513: Protein of u 98.1 0.0011 2.3E-08 55.0 18.6 161 23-183 56-255 (305)
335 KOG1008 Uncharacterized conser 98.1 1E-06 2.2E-11 77.7 1.2 198 19-219 58-275 (783)
336 smart00320 WD40 WD40 repeats. 98.1 1.7E-05 3.8E-10 43.5 5.5 39 221-259 2-40 (40)
337 KOG3617 WD40 and TPR repeat-co 98.0 0.00015 3.3E-09 66.5 13.9 230 19-259 61-331 (1416)
338 KOG3621 WD40 repeat-containing 98.0 0.0026 5.6E-08 57.5 21.0 137 17-153 33-179 (726)
339 PF14783 BBS2_Mid: Ciliary BBS 98.0 0.00088 1.9E-08 46.5 14.3 92 202-300 16-111 (111)
340 PF11768 DUF3312: Protein of u 98.0 4.7E-05 1E-09 67.0 9.4 73 16-90 258-330 (545)
341 KOG2444 WD40 repeat protein [G 97.9 2.4E-05 5.2E-10 60.8 5.6 143 115-262 32-178 (238)
342 KOG1008 Uncharacterized conser 97.9 5E-06 1.1E-10 73.4 1.8 189 102-294 57-265 (783)
343 KOG4649 PQQ (pyrrolo-quinoline 97.9 0.0079 1.7E-07 48.1 25.0 142 29-175 23-165 (354)
344 smart00320 WD40 WD40 repeats. 97.8 9.1E-05 2E-09 40.4 5.2 38 92-129 3-40 (40)
345 PF00930 DPPIV_N: Dipeptidyl p 97.8 0.023 4.9E-07 49.3 24.1 230 17-249 42-345 (353)
346 PF08596 Lgl_C: Lethal giant l 97.8 0.024 5.3E-07 49.6 22.3 230 61-300 3-287 (395)
347 PRK02888 nitrous-oxide reducta 97.7 0.017 3.6E-07 52.7 21.2 188 25-220 200-405 (635)
348 PF03178 CPSF_A: CPSF A subuni 97.7 0.028 6.1E-07 48.0 26.5 211 40-258 3-262 (321)
349 PF14783 BBS2_Mid: Ciliary BBS 97.7 0.0083 1.8E-07 41.7 14.5 103 104-215 2-110 (111)
350 PF03178 CPSF_A: CPSF A subuni 97.7 0.03 6.5E-07 47.9 25.1 214 81-302 2-264 (321)
351 PF08553 VID27: VID27 cytoplas 97.6 0.0061 1.3E-07 57.3 17.7 142 71-218 493-646 (794)
352 KOG3621 WD40 repeat-containing 97.6 0.0003 6.5E-09 63.2 8.5 107 198-304 42-155 (726)
353 COG3391 Uncharacterized conser 97.6 0.041 8.9E-07 48.2 24.7 218 21-242 77-309 (381)
354 KOG2444 WD40 repeat protein [G 97.6 0.00013 2.8E-09 56.9 5.1 141 74-219 33-177 (238)
355 PF08553 VID27: VID27 cytoplas 97.5 0.0032 6.9E-08 59.2 14.5 142 114-260 494-646 (794)
356 KOG4640 Anaphase-promoting com 97.5 0.00058 1.3E-08 60.7 8.8 75 60-135 21-96 (665)
357 KOG4640 Anaphase-promoting com 97.5 0.00034 7.4E-09 62.1 7.4 69 232-301 21-90 (665)
358 COG0823 TolB Periplasmic compo 97.5 0.019 4.2E-07 50.7 18.3 192 52-250 185-388 (425)
359 COG0823 TolB Periplasmic compo 97.5 0.01 2.2E-07 52.5 16.5 206 81-295 173-391 (425)
360 PF06977 SdiA-regulated: SdiA- 97.5 0.044 9.5E-07 44.7 22.6 169 10-180 14-205 (248)
361 PF06433 Me-amine-dh_H: Methyl 97.4 0.063 1.4E-06 45.3 21.3 206 21-230 98-331 (342)
362 KOG2079 Vacuolar assembly/sort 97.4 0.00077 1.7E-08 63.5 8.5 97 201-297 99-199 (1206)
363 PHA02713 hypothetical protein; 97.4 0.055 1.2E-06 49.9 20.0 62 200-263 463-535 (557)
364 KOG2079 Vacuolar assembly/sort 97.3 0.0073 1.6E-07 57.3 14.0 101 28-130 98-202 (1206)
365 KOG4441 Proteins containing BT 97.3 0.092 2E-06 48.5 20.9 223 29-262 285-547 (571)
366 PF02897 Peptidase_S9_N: Proly 97.2 0.15 3.3E-06 45.3 30.0 243 19-265 125-408 (414)
367 COG3391 Uncharacterized conser 97.2 0.15 3.2E-06 44.8 28.8 260 19-285 32-310 (381)
368 PF04841 Vps16_N: Vps16, N-ter 97.1 0.17 3.7E-06 44.8 26.4 192 82-285 62-271 (410)
369 KOG1897 Damage-specific DNA bi 97.1 0.28 6.1E-06 46.8 27.3 273 18-298 584-893 (1096)
370 KOG2395 Protein involved in va 97.1 0.015 3.2E-07 51.3 12.4 138 117-260 350-499 (644)
371 PF14870 PSII_BNR: Photosynthe 97.0 0.098 2.1E-06 43.9 16.6 154 16-172 143-301 (302)
372 PF06977 SdiA-regulated: SdiA- 97.0 0.14 3E-06 41.8 21.4 190 95-291 15-239 (248)
373 PF04053 Coatomer_WDAD: Coatom 97.0 0.23 5E-06 44.3 25.1 225 12-261 27-262 (443)
374 KOG4441 Proteins containing BT 97.0 0.19 4.1E-06 46.5 19.3 218 71-298 285-536 (571)
375 PHA02713 hypothetical protein; 97.0 0.071 1.5E-06 49.2 16.6 71 157-231 464-545 (557)
376 TIGR03075 PQQ_enz_alc_DH PQQ-d 96.8 0.4 8.6E-06 44.0 28.1 190 29-224 69-338 (527)
377 KOG2395 Protein involved in va 96.8 0.025 5.5E-07 49.8 11.5 144 69-218 343-499 (644)
378 COG3386 Gluconolactonase [Carb 96.8 0.28 6E-06 41.5 23.9 220 24-250 31-274 (307)
379 PF12894 Apc4_WD40: Anaphase-p 96.7 0.0071 1.5E-07 35.1 5.4 33 231-264 11-43 (47)
380 COG3204 Uncharacterized protei 96.7 0.26 5.7E-06 40.5 17.9 165 13-177 81-265 (316)
381 PRK13616 lipoprotein LpqB; Pro 96.5 0.62 1.4E-05 43.3 19.2 150 18-174 350-524 (591)
382 PF12894 Apc4_WD40: Anaphase-p 96.5 0.013 2.7E-07 34.1 5.4 32 17-48 11-42 (47)
383 PRK13616 lipoprotein LpqB; Pro 96.5 0.76 1.7E-05 42.7 20.9 206 80-300 328-565 (591)
384 TIGR03075 PQQ_enz_alc_DH PQQ-d 96.1 1.1 2.4E-05 41.2 26.7 60 211-271 441-500 (527)
385 PRK13684 Ycf48-like protein; P 96.0 0.7 1.5E-05 39.7 16.0 151 17-174 172-330 (334)
386 PF00780 CNH: CNH domain; Int 96.0 0.73 1.6E-05 38.3 20.8 146 111-266 5-170 (275)
387 COG3490 Uncharacterized protei 96.0 0.72 1.6E-05 37.9 20.9 248 19-299 69-344 (366)
388 PHA03098 kelch-like protein; P 95.9 1.2 2.6E-05 41.1 18.1 63 69-133 341-416 (534)
389 PF14655 RAB3GAP2_N: Rab3 GTPa 95.7 1.3 2.9E-05 39.0 21.8 89 22-111 6-118 (415)
390 PF02897 Peptidase_S9_N: Proly 95.7 1.5 3.2E-05 39.0 28.9 194 64-261 128-357 (414)
391 PF04841 Vps16_N: Vps16, N-ter 95.6 1.5 3.3E-05 38.9 29.6 210 22-242 33-270 (410)
392 TIGR03118 PEPCTERM_chp_1 conse 95.5 1.2 2.6E-05 37.1 23.7 220 63-283 26-307 (336)
393 PF14583 Pectate_lyase22: Olig 95.2 1.9 4.1E-05 37.4 21.5 180 108-290 42-254 (386)
394 PHA03098 kelch-like protein; P 95.0 3 6.5E-05 38.5 20.6 183 68-262 292-512 (534)
395 PF05694 SBP56: 56kDa selenium 95.0 2.4 5.2E-05 37.3 22.8 202 18-220 65-343 (461)
396 PHA02790 Kelch-like protein; P 94.4 3.8 8.2E-05 37.3 17.3 179 70-262 271-471 (480)
397 PF14870 PSII_BNR: Photosynthe 94.4 2.7 5.8E-05 35.5 26.8 102 196-299 151-257 (302)
398 PF07995 GSDH: Glucose / Sorbo 94.4 3 6.5E-05 35.9 22.7 57 200-256 270-330 (331)
399 KOG1983 Tomosyn and related SN 94.3 2.2 4.8E-05 42.3 15.1 31 18-48 36-66 (993)
400 KOG3630 Nuclear pore complex, 94.3 0.94 2E-05 44.2 12.0 130 160-290 117-260 (1405)
401 PF12234 Rav1p_C: RAVE protein 94.2 1.4 3.1E-05 40.9 12.8 94 165-260 49-155 (631)
402 COG3386 Gluconolactonase [Carb 94.2 3.1 6.8E-05 35.2 21.6 217 67-293 32-275 (307)
403 PF10168 Nup88: Nuclear pore c 94.1 2.2 4.7E-05 40.7 14.2 25 61-85 86-110 (717)
404 KOG3630 Nuclear pore complex, 94.0 1.8 3.8E-05 42.5 13.1 144 103-249 102-261 (1405)
405 PHA02790 Kelch-like protein; P 93.9 5 0.00011 36.5 19.2 103 29-133 272-386 (480)
406 TIGR03074 PQQ_membr_DH membran 93.8 6.8 0.00015 37.8 21.8 195 29-226 194-484 (764)
407 PF12234 Rav1p_C: RAVE protein 93.7 1.9 4.2E-05 40.1 12.7 108 20-129 32-154 (631)
408 PRK10115 protease 2; Provision 93.6 7 0.00015 37.4 32.2 237 19-264 128-397 (686)
409 PF15390 DUF4613: Domain of un 93.6 2.2 4.8E-05 38.8 12.4 153 15-175 17-186 (671)
410 PF10313 DUF2415: Uncharacteri 93.6 0.41 8.8E-06 27.0 5.2 31 232-262 1-34 (43)
411 KOG4499 Ca2+-binding protein R 93.5 3.3 7.2E-05 33.2 19.6 57 236-292 216-273 (310)
412 KOG1916 Nuclear protein, conta 93.1 0.073 1.6E-06 50.1 2.8 172 57-266 130-328 (1283)
413 KOG2280 Vacuolar assembly/sort 93.0 6.7 0.00015 36.9 14.7 178 81-264 64-249 (829)
414 COG5167 VID27 Protein involved 92.9 3.7 7.9E-05 36.8 12.5 143 112-261 478-632 (776)
415 COG3204 Uncharacterized protei 92.8 5 0.00011 33.4 16.1 160 141-303 82-262 (316)
416 KOG1897 Damage-specific DNA bi 92.6 11 0.00023 36.8 28.0 271 25-304 265-567 (1096)
417 PF10313 DUF2415: Uncharacteri 92.3 0.83 1.8E-05 25.8 5.3 32 102-133 1-35 (43)
418 PF05096 Glu_cyclase_2: Glutam 91.8 6.3 0.00014 32.4 23.6 184 102-293 45-250 (264)
419 KOG1900 Nuclear pore complex, 91.6 6.8 0.00015 39.2 13.7 34 229-262 240-273 (1311)
420 PF10647 Gmad1: Lipoprotein Lp 91.6 6.7 0.00014 32.2 17.5 146 146-296 25-188 (253)
421 KOG2377 Uncharacterized conser 91.6 7.3 0.00016 34.5 12.6 95 99-196 64-162 (657)
422 PF14781 BBS2_N: Ciliary BBSom 91.5 4.1 8.8E-05 29.6 12.4 114 64-179 3-129 (136)
423 PLN00033 photosystem II stabil 91.4 9.7 0.00021 33.7 16.4 147 19-172 240-396 (398)
424 PF07569 Hira: TUP1-like enhan 90.9 2.8 6E-05 33.6 9.2 64 67-131 18-95 (219)
425 PF07569 Hira: TUP1-like enhan 90.9 2.5 5.4E-05 33.9 8.9 62 199-261 20-95 (219)
426 PF14655 RAB3GAP2_N: Rab3 GTPa 90.9 3.5 7.6E-05 36.5 10.4 47 11-57 301-347 (415)
427 KOG2377 Uncharacterized conser 90.8 11 0.00025 33.4 13.1 142 20-164 25-173 (657)
428 PF14727 PHTB1_N: PTHB1 N-term 90.5 12 0.00026 33.2 31.7 266 29-303 37-360 (418)
429 PF08801 Nucleoporin_N: Nup133 90.5 4.2 9.1E-05 36.3 10.9 31 232-262 190-220 (422)
430 PF14781 BBS2_N: Ciliary BBSom 90.4 5.3 0.00012 29.0 13.9 107 22-132 3-126 (136)
431 TIGR03118 PEPCTERM_chp_1 conse 90.2 10 0.00022 31.9 23.7 221 19-241 24-307 (336)
432 PF10168 Nup88: Nuclear pore c 89.7 5.8 0.00013 37.9 11.5 26 18-43 85-110 (717)
433 TIGR02604 Piru_Ver_Nterm putat 89.4 14 0.0003 32.3 14.5 62 233-295 125-205 (367)
434 PRK10115 protease 2; Provision 89.2 21 0.00046 34.2 25.6 193 62-260 129-343 (686)
435 TIGR02276 beta_rpt_yvtn 40-res 89.1 1.8 3.9E-05 23.9 5.1 40 241-281 1-41 (42)
436 PF08728 CRT10: CRT10; InterP 89.1 21 0.00046 34.0 15.6 100 199-299 112-242 (717)
437 PF07676 PD40: WD40-like Beta 88.7 2.1 4.6E-05 23.3 5.1 23 272-294 7-29 (39)
438 COG3490 Uncharacterized protei 88.6 13 0.00028 30.9 15.1 133 107-251 41-181 (366)
439 PF15390 DUF4613: Domain of un 88.2 21 0.00046 32.9 14.4 117 14-130 53-185 (671)
440 PF08728 CRT10: CRT10; InterP 88.0 9.9 0.00021 36.0 11.4 104 156-260 113-245 (717)
441 PF11715 Nup160: Nucleoporin N 87.9 2.9 6.3E-05 38.7 8.3 36 233-268 216-255 (547)
442 PF05694 SBP56: 56kDa selenium 87.7 20 0.00043 31.9 24.7 192 70-263 86-344 (461)
443 KOG1916 Nuclear protein, conta 87.6 0.52 1.1E-05 44.7 3.1 110 20-130 183-322 (1283)
444 TIGR03074 PQQ_membr_DH membran 87.6 29 0.00062 33.7 23.9 197 71-270 194-486 (764)
445 PF07676 PD40: WD40-like Beta 86.9 2.3 4.9E-05 23.2 4.4 31 14-44 5-38 (39)
446 PF11715 Nup160: Nucleoporin N 86.9 7.2 0.00016 36.2 10.3 71 27-97 156-256 (547)
447 smart00036 CNH Domain found in 86.8 18 0.00039 30.6 28.9 234 29-271 13-280 (302)
448 PRK13684 Ycf48-like protein; P 85.6 22 0.00049 30.6 27.7 149 145-302 173-330 (334)
449 KOG4460 Nuclear pore complex, 85.5 11 0.00024 34.0 9.8 97 62-181 106-204 (741)
450 PF12657 TFIIIC_delta: Transcr 84.9 6.3 0.00014 30.2 7.5 30 102-131 86-121 (173)
451 TIGR02604 Piru_Ver_Nterm putat 84.8 26 0.00056 30.6 15.5 101 18-120 14-142 (367)
452 KOG2247 WD40 repeat-containing 84.8 0.15 3.3E-06 44.8 -1.6 139 106-252 39-179 (615)
453 PF14727 PHTB1_N: PTHB1 N-term 84.8 28 0.00061 31.0 19.6 147 114-261 38-204 (418)
454 PF05096 Glu_cyclase_2: Glutam 84.6 21 0.00046 29.4 27.3 180 62-250 47-249 (264)
455 KOG2247 WD40 repeat-containing 83.8 0.11 2.4E-06 45.6 -2.8 140 148-293 38-179 (615)
456 COG4590 ABC-type uncharacteriz 83.6 12 0.00025 33.3 9.0 164 13-181 216-392 (733)
457 COG5167 VID27 Protein involved 83.2 23 0.00051 32.0 10.8 58 242-299 572-629 (776)
458 PF03088 Str_synth: Strictosid 83.1 9.3 0.0002 25.6 6.7 53 249-302 33-87 (89)
459 PF12341 DUF3639: Protein of u 82.5 4.2 9.1E-05 20.4 3.6 26 232-259 2-27 (27)
460 PF10647 Gmad1: Lipoprotein Lp 81.9 27 0.00059 28.7 22.8 187 103-297 25-232 (253)
461 PF12768 Rax2: Cortical protei 81.6 30 0.00066 29.0 11.1 92 211-303 16-121 (281)
462 PF12768 Rax2: Cortical protei 81.4 22 0.00047 29.8 9.7 71 39-110 16-97 (281)
463 PF14761 HPS3_N: Hermansky-Pud 81.0 26 0.00057 27.8 13.7 49 72-121 29-79 (215)
464 PF14761 HPS3_N: Hermansky-Pud 80.8 7.2 0.00016 30.9 6.3 49 244-293 29-79 (215)
465 COG5276 Uncharacterized conser 79.5 36 0.00078 28.6 26.8 270 19-300 88-366 (370)
466 TIGR03548 mutarot_permut cycli 78.5 41 0.00089 28.7 21.9 22 157-178 172-197 (323)
467 PRK14131 N-acetylneuraminic ac 78.4 46 0.001 29.2 20.6 12 241-252 278-289 (376)
468 KOG4499 Ca2+-binding protein R 77.8 36 0.00078 27.6 14.9 142 19-164 110-273 (310)
469 COG4590 ABC-type uncharacteriz 77.6 53 0.0011 29.4 11.7 268 29-301 80-385 (733)
470 PF07250 Glyoxal_oxid_N: Glyox 77.0 39 0.00085 27.6 11.7 89 41-129 48-146 (243)
471 PF03022 MRJP: Major royal jel 76.1 46 0.001 28.0 15.6 136 168-304 35-216 (287)
472 KOG1900 Nuclear pore complex, 76.0 97 0.0021 31.7 13.7 141 161-304 93-273 (1311)
473 smart00564 PQQ beta-propeller 75.4 7.8 0.00017 19.9 3.7 24 245-268 8-31 (33)
474 TIGR02608 delta_60_rpt delta-6 75.1 11 0.00023 22.7 4.5 32 275-306 2-38 (55)
475 KOG3616 Selective LIM binding 73.8 8.1 0.00018 36.5 5.5 69 16-87 13-81 (1636)
476 KOG3522 Predicted guanine nucl 73.2 41 0.00088 32.5 9.8 137 115-263 549-699 (925)
477 KOG4460 Nuclear pore complex, 73.0 53 0.0011 30.0 10.0 69 233-301 105-196 (741)
478 PF12657 TFIIIC_delta: Transcr 71.6 35 0.00077 26.1 8.0 30 275-304 87-122 (173)
479 PF01436 NHL: NHL repeat; Int 71.5 11 0.00024 18.8 4.2 25 275-299 3-27 (28)
480 COG1520 FOG: WD40-like repeat 70.1 74 0.0016 27.7 22.4 229 71-312 68-316 (370)
481 KOG3616 Selective LIM binding 69.8 15 0.00033 34.8 6.3 60 197-259 22-81 (1636)
482 PF01011 PQQ: PQQ enzyme repea 67.9 15 0.00033 19.8 3.9 27 246-272 3-29 (38)
483 PLN02153 epithiospecifier prot 67.6 80 0.0017 27.2 23.3 22 70-91 85-111 (341)
484 TIGR02276 beta_rpt_yvtn 40-res 65.9 20 0.00042 19.5 6.0 36 203-239 6-41 (42)
485 TIGR02171 Fb_sc_TIGR02171 Fibr 65.4 24 0.00051 34.5 6.8 58 253-310 329-392 (912)
486 PF14779 BBS1: Ciliary BBSome 64.1 51 0.0011 27.1 7.7 56 30-85 196-254 (257)
487 PF07250 Glyoxal_oxid_N: Glyox 63.9 28 0.0006 28.4 6.2 82 213-295 48-139 (243)
488 PF10433 MMS1_N: Mono-function 63.8 1.2E+02 0.0026 27.8 28.5 282 17-302 43-388 (504)
489 TIGR03547 muta_rot_YjhT mutatr 63.3 98 0.0021 26.6 21.5 12 111-122 117-128 (346)
490 KOG1896 mRNA cleavage and poly 61.1 2E+02 0.0043 29.5 21.2 141 72-218 1047-1212(1366)
491 KOG2280 Vacuolar assembly/sort 60.9 1.6E+02 0.0035 28.3 14.7 174 123-306 64-249 (829)
492 PF13570 PQQ_3: PQQ-like domai 60.9 17 0.00038 19.7 3.3 21 70-90 20-40 (40)
493 KOG3522 Predicted guanine nucl 59.9 29 0.00062 33.4 6.2 131 158-298 548-693 (925)
494 PF03088 Str_synth: Strictosid 55.4 52 0.0011 22.1 5.4 42 207-249 33-74 (89)
495 KOG2103 Uncharacterized conser 55.0 85 0.0018 30.3 8.3 90 6-102 25-116 (910)
496 TIGR02171 Fb_sc_TIGR02171 Fibr 54.4 1.2E+02 0.0027 29.9 9.5 75 80-154 328-408 (912)
497 KOG2063 Vacuolar assembly/sort 53.7 2.4E+02 0.0052 28.1 17.0 70 23-93 20-100 (877)
498 KOG1898 Splicing factor 3b, su 51.3 2.8E+02 0.006 28.1 15.7 151 19-174 879-1047(1205)
499 COG5308 NUP170 Nuclear pore co 47.8 1.7E+02 0.0036 29.0 9.0 27 232-260 182-208 (1263)
500 KOG1898 Splicing factor 3b, su 47.4 3.2E+02 0.0069 27.7 13.9 39 17-55 582-626 (1205)
No 1
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.6e-58 Score=388.77 Aligned_cols=299 Identities=63% Similarity=1.141 Sum_probs=291.5
Q ss_pred hhhhhhhhhcccCcEEEEEEcCCCCeEEEEecCCeEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEecCCCeEEE
Q 047355 6 ELQIEKEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRV 85 (312)
Q Consensus 6 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~i 85 (312)
++.+.+.+..++++|.++.|||..++++++-.+|.|.|||++++...+++...+-||+++.|.+..+|+++|+.|..|++
T Consensus 2 ~l~~krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrV 81 (794)
T KOG0276|consen 2 KLDFKRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRV 81 (794)
T ss_pred cchhhhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEE
Confidence 56778888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCceeeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeC
Q 047355 86 FDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASL 165 (312)
Q Consensus 86 wd~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~ 165 (312)
|++++++.++.++.|.+.|++++.||+.++++|+|+|-+||+||+.....+.+.|++|.++|++++|+|++.+.|++++.
T Consensus 82 fnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sL 161 (794)
T KOG0276|consen 82 FNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASL 161 (794)
T ss_pred EecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEcCCCcceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEecccccCeEEEEEeCCCcE
Q 047355 166 DGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRI 245 (312)
Q Consensus 166 dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~i~~l~~~~~~~~ 245 (312)
|++|++|.+.+..+.+++++|+.+|+|+++...+|..++++|++|.+|++||.++..|++++.||...|..+.|+|.-++
T Consensus 162 DrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpi 241 (794)
T KOG0276|consen 162 DRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPI 241 (794)
T ss_pred cccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcE
Confidence 99999999999999999999999999999998888899999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCcEEEEeCCCcceeeecccCccceEEEEEecCCCeEEEEecCCeEEEEeccC
Q 047355 246 IITASEDGTILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGCDNGTLIVKIGNS 304 (312)
Q Consensus 246 l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~v~~~~~ 304 (312)
++|||+||++|||+..|+++..++.-..+++|+++-.+.++.++.|.++|.+.|..++.
T Consensus 242 iisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v~lgre 300 (794)
T KOG0276|consen 242 IISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTVKLGRE 300 (794)
T ss_pred EEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEEEccCC
Confidence 99999999999999999999999999999999999999999999999999999999884
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.1e-53 Score=341.18 Aligned_cols=284 Identities=24% Similarity=0.401 Sum_probs=257.1
Q ss_pred hhcccCcEEEEEEcCCCCeEEEEecCCeEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEecCCCeEEEEEccCce
Q 047355 13 FIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMA 92 (312)
Q Consensus 13 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~ 92 (312)
+.+|.++|.+++|+|+|.+|++|+.|.++|+||+.+..+..+...|..-|.+++|+||++.|++|+.||+|++||.++++
T Consensus 111 ~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~ 190 (480)
T KOG0271|consen 111 IAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQ 190 (480)
T ss_pred cCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred e-eeeecccccceeEEEEecC-----CCEEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeCC
Q 047355 93 S-VKEFEAHEDYIRSLAVHPT-----FPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLD 166 (312)
Q Consensus 93 ~-~~~~~~h~~~i~~~~~~~~-----~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d 166 (312)
. ...+.+|...|++++|.|- .+.+++++.||.++|||+... .+...+.+|+..|.++.|- +..+++++|.|
T Consensus 191 ~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~-~~~~~lsgHT~~VTCvrwG--G~gliySgS~D 267 (480)
T KOG0271|consen 191 QIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLG-TCVRTLSGHTASVTCVRWG--GEGLIYSGSQD 267 (480)
T ss_pred cccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCc-eEEEEeccCccceEEEEEc--CCceEEecCCC
Confidence 4 4678999999999999864 468999999999999998765 6677889999999999996 34799999999
Q ss_pred CeEEEEEcCCCccee-----------------------------------------------------------------
Q 047355 167 GTIQIWNMDSSAAKF----------------------------------------------------------------- 181 (312)
Q Consensus 167 g~v~iwd~~~~~~~~----------------------------------------------------------------- 181 (312)
++|++|+...+....
T Consensus 268 rtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~t 347 (480)
T KOG0271|consen 268 RTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFT 347 (480)
T ss_pred ceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCce
Confidence 999999874322211
Q ss_pred --------------eecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEecccccCeEEEEEeCCCcEEE
Q 047355 182 --------------TLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIII 247 (312)
Q Consensus 182 --------------~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~ 247 (312)
.+.+|+.-|+.+. ++||++++|+++.|..|++||.++++.+..+++|...|+.++|+.|.++|+
T Consensus 348 lflW~p~~~kkpi~rmtgHq~lVn~V~--fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlV 425 (480)
T KOG0271|consen 348 LFLWNPFKSKKPITRMTGHQALVNHVS--FSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLV 425 (480)
T ss_pred EEEecccccccchhhhhchhhheeeEE--ECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEE
Confidence 1234555556554 589999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCcEEEEeCCCcceeeecccCccceEEEEEecCCCeEEEEecCCeEEEEe
Q 047355 248 TASEDGTILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGCDNGTLIVKI 301 (312)
Q Consensus 248 s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~v~~ 301 (312)
+||.|.++++|++++.++...+.+|..+|+++.|+|||+.+++|+.|..+++|.
T Consensus 426 S~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 426 SGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred EcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 999999999999999999999999999999999999999999999999999985
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.4e-51 Score=334.36 Aligned_cols=283 Identities=26% Similarity=0.387 Sum_probs=267.9
Q ss_pred ccCcEEEEEEcCCCCeEEEEecCCeEEEEeccCCceeeeEEecCCceeEEEEeeC--CcEEEEecCCCeEEEEEccCcee
Q 047355 16 KSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAR--EHWIVCGSDDKFIRVFDYNTMAS 93 (312)
Q Consensus 16 ~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~ 93 (312)
-..+|..+.|+++++.|+||+.+|.+++|+.+......++.+|...+.++.|+|. +..|++|+.||++++|++++..+
T Consensus 174 d~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~ 253 (459)
T KOG0272|consen 174 DTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETP 253 (459)
T ss_pred CCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcc
Confidence 3569999999999999999999999999999988889999999999999999997 56899999999999999999899
Q ss_pred eeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeCCCeEEEEE
Q 047355 94 VKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWN 173 (312)
Q Consensus 94 ~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd 173 (312)
+..+++|...|..++|||+|++|+|++.|.+-++||+++..+ ....++|...|.+++|+| ++.++++|+.|..-++||
T Consensus 254 l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~E-lL~QEGHs~~v~~iaf~~-DGSL~~tGGlD~~~RvWD 331 (459)
T KOG0272|consen 254 LQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSE-LLLQEGHSKGVFSIAFQP-DGSLAATGGLDSLGRVWD 331 (459)
T ss_pred hhhhhcchhhheeeeecCCCceeeecccccchhhcccccchh-hHhhcccccccceeEecC-CCceeeccCccchhheee
Confidence 999999999999999999999999999999999999987643 345689999999999998 568999999999999999
Q ss_pred cCCCcceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEecccccCeEEEEEeC-CCcEEEEEeCC
Q 047355 174 MDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHP-ELRIIITASED 252 (312)
Q Consensus 174 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~i~~l~~~~-~~~~l~s~s~d 252 (312)
++++.++..+.+|...|..++| +|+|..+|+||.|++++|||++....+.++.+|.+-|+.|+|+| .|.+|+|+|.|
T Consensus 332 lRtgr~im~L~gH~k~I~~V~f--sPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD 409 (459)
T KOG0272|consen 332 LRTGRCIMFLAGHIKEILSVAF--SPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYD 409 (459)
T ss_pred cccCcEEEEecccccceeeEeE--CCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccC
Confidence 9999999999999999999985 78999999999999999999999999999999999999999998 78899999999
Q ss_pred CcEEEEeCCCcceeeecccCccceEEEEEecCCCeEEEEecCCeEEEEec
Q 047355 253 GTILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGCDNGTLIVKIG 302 (312)
Q Consensus 253 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~v~~~ 302 (312)
++++||...++.+.+++.+|.++|.++++++|++.|++++-|.++++|.+
T Consensus 410 ~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~~ 459 (459)
T KOG0272|consen 410 NTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWRP 459 (459)
T ss_pred cceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeeccC
Confidence 99999999999999999999999999999999999999999999999964
No 4
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=3.4e-47 Score=295.73 Aligned_cols=293 Identities=23% Similarity=0.410 Sum_probs=268.0
Q ss_pred chhhhhhhhhcccCcEEEEEEcCCCCeEEEEecCCeEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEecCCCeEE
Q 047355 5 LELQIEKEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIR 84 (312)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~ 84 (312)
+.++..+.+.+|..+|+++.|++|+++|++++.||.+.|||.-+......+.....-|.+++|+|.++++++|+-|+...
T Consensus 43 i~~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Cs 122 (343)
T KOG0286|consen 43 IQMRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCS 122 (343)
T ss_pred eeeeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeE
Confidence 44555678999999999999999999999999999999999888777788888889999999999999999999999999
Q ss_pred EEEccCc------eeeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCC
Q 047355 85 VFDYNTM------ASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLN 158 (312)
Q Consensus 85 iwd~~~~------~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 158 (312)
+|++.+. ...+++.+|++.+.++.|-++ ..|+|+|.|.++-+||+++. +....|.+|...|..+.+.|.+.+
T Consensus 123 iy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g-~~~~~f~GH~gDV~slsl~p~~~n 200 (343)
T KOG0286|consen 123 IYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETG-QQTQVFHGHTGDVMSLSLSPSDGN 200 (343)
T ss_pred EEecccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccc-eEEEEecCCcccEEEEecCCCCCC
Confidence 9999854 344678999999999999884 56889999999999999987 567889999999999999998899
Q ss_pred EEEEEeCCCeEEEEEcCCCcceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEeccc--ccCeEE
Q 047355 159 TFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGH--TNNVTA 236 (312)
Q Consensus 159 ~~~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h--~~~i~~ 236 (312)
.|++|+.|.+.++||++.+...+++.+|+..|+.+.|+ |+|.-+++|++|++.++||++..+.+..+... ..+|++
T Consensus 201 tFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ff--P~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitS 278 (343)
T KOG0286|consen 201 TFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFF--PSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITS 278 (343)
T ss_pred eEEecccccceeeeeccCcceeEeecccccccceEEEc--cCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCcee
Confidence 99999999999999999999999999999999999975 56778999999999999999998888777632 357999
Q ss_pred EEEeCCCcEEEEEeCCCcEEEEeCCCcceeeecccCccceEEEEEecCCCeEEEEecCCeEEEEe
Q 047355 237 VCFHPELRIIITASEDGTILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGCDNGTLIVKI 301 (312)
Q Consensus 237 l~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~v~~ 301 (312)
++|+..|++|++|-.|.++.+||.-.++....+.+|..+|.+++.+|||..+++|+.|.+++||.
T Consensus 279 v~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 279 VAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred EEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 99999999999999999999999888899999999999999999999999999999999999983
No 5
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=4.8e-45 Score=282.03 Aligned_cols=292 Identities=20% Similarity=0.319 Sum_probs=251.6
Q ss_pred hhhhhhhhhcccCcEEEEEEcCCC-CeEEEEecCCeEEEEeccC-----CceeeeEEecCCceeEEEEeeCCcEEEEecC
Q 047355 6 ELQIEKEFIQKSDRVKSVDFHPTQ-PWVLASLYSGTVCIWNYHS-----QTTEKSVKVTDSPVRTAKFVAREHWIVCGSD 79 (312)
Q Consensus 6 ~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~v~iw~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~ 79 (312)
++.+.-.|.+|.+.|..++..+.+ +.+++++.|.++.+|++.+ +...+.+.+|+..|..+..++++++.++|+.
T Consensus 4 ~l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~sw 83 (315)
T KOG0279|consen 4 QLVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASW 83 (315)
T ss_pred hheeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccc
Confidence 344556788999999999999975 5788899999999998854 4567788999999999999999999999999
Q ss_pred CCeEEEEEccCceeeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCC-CC
Q 047355 80 DKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKD-LN 158 (312)
Q Consensus 80 dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~ 158 (312)
|+++++||+.+++..+.+.+|...|.+++|+++.+.+++||.|.++++|++.........-.++.+.|.++.|+|.. ..
T Consensus 84 D~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p 163 (315)
T KOG0279|consen 84 DGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNP 163 (315)
T ss_pred cceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCc
Confidence 99999999999999999999999999999999999999999999999999876533322223347889999999975 56
Q ss_pred EEEEEeCCCeEEEEEcCCCcceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEecccccCeEEEE
Q 047355 159 TFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVC 238 (312)
Q Consensus 159 ~~~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~i~~l~ 238 (312)
.+++++.|++|++||+++.+....+.+|...++.+. ++|||..+++|+.||.+.+||+..++.+..+. |...|++++
T Consensus 164 ~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~--vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~ 240 (315)
T KOG0279|consen 164 IIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVT--VSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLC 240 (315)
T ss_pred EEEEccCCceEEEEccCCcchhhccccccccEEEEE--ECCCCCEEecCCCCceEEEEEccCCceeEecc-CCCeEeeEE
Confidence 899999999999999999999999999999999887 58999999999999999999999999887776 788999999
Q ss_pred EeCCCcEEEEEeCCCcEEEEeCCCcceeeecc----cC-----ccceEEEEEecCCCeEEEEecCCeEEEEe
Q 047355 239 FHPELRIIITASEDGTILIWNATTFRLQNTLS----SG-----LERVWSIGYKKGSNQVAFGCDNGTLIVKI 301 (312)
Q Consensus 239 ~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~----~~-----~~~v~~~~~~~~~~~l~~~~~~g~i~v~~ 301 (312)
|+|+..+|+.+. +-.|+|||+.+.+.+.++. +. .....+++|++||+.|..|-.|+.|++|-
T Consensus 241 fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~q 311 (315)
T KOG0279|consen 241 FSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQ 311 (315)
T ss_pred ecCCceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEE
Confidence 999977766555 4569999998865433322 22 44578999999999999999999999873
No 6
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.1e-46 Score=305.77 Aligned_cols=249 Identities=25% Similarity=0.418 Sum_probs=235.3
Q ss_pred hhhhhhhcccCcEEEEEEcCC--CCeEEEEecCCeEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEecCCCeEEE
Q 047355 8 QIEKEFIQKSDRVKSVDFHPT--QPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRV 85 (312)
Q Consensus 8 ~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~i 85 (312)
+....|.+|.+.|.++.|+|. +..+++|+.||++++|+++...++..+.+|...|..++|+|+|++|++++.|.+-++
T Consensus 208 ~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRl 287 (459)
T KOG0272|consen 208 NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRL 287 (459)
T ss_pred ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhh
Confidence 455678899999999999997 568999999999999999998899999999999999999999999999999999999
Q ss_pred EEccCceeeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeC
Q 047355 86 FDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASL 165 (312)
Q Consensus 86 wd~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~ 165 (312)
||+.+...+...++|...|.+++|+|+|.+++|||.|..-+|||+++. .++..+.+|...|..+.|+|+ +..+++||.
T Consensus 288 WD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtg-r~im~L~gH~k~I~~V~fsPN-Gy~lATgs~ 365 (459)
T KOG0272|consen 288 WDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTG-RCIMFLAGHIKEILSVAFSPN-GYHLATGSS 365 (459)
T ss_pred cccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccC-cEEEEecccccceeeEeECCC-ceEEeecCC
Confidence 999999888888999999999999999999999999999999999987 667788999999999999995 589999999
Q ss_pred CCeEEEEEcCCCcceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEecccccCeEEEEEeCCCcE
Q 047355 166 DGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRI 245 (312)
Q Consensus 166 dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~i~~l~~~~~~~~ 245 (312)
|++++|||++......++.+|..-|..+.|.+ ..|.+|++++.|+++++|..++..+++.+.||.+.|-+++++|++++
T Consensus 366 Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p-~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~ 444 (459)
T KOG0272|consen 366 DNTCKVWDLRMRSELYTIPAHSNLVSQVKYSP-QEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQA 444 (459)
T ss_pred CCcEEEeeecccccceecccccchhhheEecc-cCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCce
Confidence 99999999999999999999999999998765 47899999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCcEEEEe
Q 047355 246 IITASEDGTILIWN 259 (312)
Q Consensus 246 l~s~s~dg~v~iwd 259 (312)
++|++.|+++++|.
T Consensus 445 i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 445 IATSSFDRTIKLWR 458 (459)
T ss_pred EEEeccCceeeecc
Confidence 99999999999995
No 7
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.6e-44 Score=285.67 Aligned_cols=250 Identities=24% Similarity=0.436 Sum_probs=222.3
Q ss_pred eeeEEecCCceeEEEEeeCCcEEEEecCCCeEEEEEccCceeeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCC
Q 047355 52 EKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWE 131 (312)
Q Consensus 52 ~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~ 131 (312)
..++.+|..+|.++.|+|++..|++|+.|.++|+||+.+..+..+.++|...|.|++|+|+++.|++|+.||+|++||..
T Consensus 108 ssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpk 187 (480)
T KOG0271|consen 108 SSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPK 187 (480)
T ss_pred ccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCC
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCceeeeEecCCccceEEEEeCCCC----CCEEEEEeCCCeEEEEEcCCCcceeeecccccceeEEEEEEcCCceEEEEE
Q 047355 132 KNWECTQTFEGHSHYVMQSAFNPKD----LNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITG 207 (312)
Q Consensus 132 ~~~~~~~~~~~~~~~v~~~~~~~~~----~~~~~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg 207 (312)
++.+....+.+|...|..++|.|.. ..+|++++.||+|+|||+..+.++..+.+|+.+|+|+.| . ...++.+|
T Consensus 188 tg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrw--G-G~gliySg 264 (480)
T KOG0271|consen 188 TGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRW--G-GEGLIYSG 264 (480)
T ss_pred CCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEE--c-CCceEEec
Confidence 8878888899999999999998743 358999999999999999999999999999999999986 2 23356666
Q ss_pred eCCCeEEEEeCCCC------------------------------------------------------------------
Q 047355 208 SDDFTVKVWDYETK------------------------------------------------------------------ 221 (312)
Q Consensus 208 ~~dg~i~vwd~~~~------------------------------------------------------------------ 221 (312)
+.|++|++|+...+
T Consensus 265 S~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsD 344 (480)
T KOG0271|consen 265 SQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSD 344 (480)
T ss_pred CCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecC
Confidence 66666666654332
Q ss_pred -------------eEEEEecccccCeEEEEEeCCCcEEEEEeCCCcEEEEeCCCcceeeecccCccceEEEEEecCCCeE
Q 047355 222 -------------TCVQILEGHTNNVTAVCFHPELRIIITASEDGTILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQV 288 (312)
Q Consensus 222 -------------~~~~~~~~h~~~i~~l~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 288 (312)
+++..+.+|..-|+.+.|+||++++|++|-|..|++|+-.+++.+.++.+|...|+.++|+.|..+|
T Consensus 345 d~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLl 424 (480)
T KOG0271|consen 345 DFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLL 424 (480)
T ss_pred CceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEE
Confidence 2333455788889999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCeEEEEeccC
Q 047355 289 AFGCDNGTLIVKIGNS 304 (312)
Q Consensus 289 ~~~~~~g~i~v~~~~~ 304 (312)
++|+.|.++.||--+.
T Consensus 425 VS~SkDsTLKvw~V~t 440 (480)
T KOG0271|consen 425 VSGSKDSTLKVWDVRT 440 (480)
T ss_pred EEcCCCceEEEEEeee
Confidence 9999999999997654
No 8
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4e-43 Score=307.88 Aligned_cols=289 Identities=34% Similarity=0.703 Sum_probs=262.3
Q ss_pred hhhhcccCcEEEEEEcCCCCeEEEEecCCeEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEecCCCeEEEEEccC
Q 047355 11 KEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNT 90 (312)
Q Consensus 11 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~ 90 (312)
..|...+.+|..++|||..++++++-..|.|++||++-+.++..|..|++||+.+.|+|++.++++|+.|-.|++|++++
T Consensus 3 tkfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~ 82 (1202)
T KOG0292|consen 3 TKFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKT 82 (1202)
T ss_pred chhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccc
Confidence 45667788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeCCCeEE
Q 047355 91 MASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQ 170 (312)
Q Consensus 91 ~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~ 170 (312)
.+++.++.+|-+.|+.+.||+..+.|+++|+|.+|+||++... .++..+.+|.++|++..|+|.+ .+++++|.|.+||
T Consensus 83 rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr-~~iavltGHnHYVMcAqFhptE-DlIVSaSLDQTVR 160 (1202)
T KOG0292|consen 83 RRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSR-KCIAVLTGHNHYVMCAQFHPTE-DLIVSASLDQTVR 160 (1202)
T ss_pred ceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCC-ceEEEEecCceEEEeeccCCcc-ceEEEecccceEE
Confidence 9999999999999999999999999999999999999999876 6788899999999999999964 7999999999999
Q ss_pred EEEcCCCc-----------------------------ceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCC
Q 047355 171 IWNMDSSA-----------------------------AKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETK 221 (312)
Q Consensus 171 iwd~~~~~-----------------------------~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~ 221 (312)
+||+...+ ..+.+++|..+|+..+|. |.-..+++|++|+.|++|-+...
T Consensus 161 VWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfh--pTlpliVSG~DDRqVKlWrmnet 238 (1202)
T KOG0292|consen 161 VWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFH--PTLPLIVSGADDRQVKLWRMNET 238 (1202)
T ss_pred EEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEec--CCcceEEecCCcceeeEEEeccc
Confidence 99985211 124568899999988864 45578999999999999988643
Q ss_pred e--EEEEecccccCeEEEEEeCCCcEEEEEeCCCcEEEEeCCCcceeeecccCccceEEEEEecCCCeEEEEecCCeEEE
Q 047355 222 T--CVQILEGHTNNVTAVCFHPELRIIITASEDGTILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGCDNGTLIV 299 (312)
Q Consensus 222 ~--~~~~~~~h~~~i~~l~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~v 299 (312)
+ .+-+.++|..+|.++-|+|...++++.|+|++||+||+......+++....++-|.++-.|.+|++++|-+.|.+.+
T Consensus 239 KaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsGm~VF 318 (1202)
T KOG0292|consen 239 KAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSGMIVF 318 (1202)
T ss_pred cceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeecCCceEEE
Confidence 3 24567899999999999999999999999999999999998899999989999999999999999999999999887
Q ss_pred Eecc
Q 047355 300 KIGN 303 (312)
Q Consensus 300 ~~~~ 303 (312)
...+
T Consensus 319 kleR 322 (1202)
T KOG0292|consen 319 KLER 322 (1202)
T ss_pred EEcc
Confidence 6653
No 9
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2.9e-42 Score=262.70 Aligned_cols=268 Identities=18% Similarity=0.390 Sum_probs=234.1
Q ss_pred CeEEEEecCCeEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEecCCCeEEEEEccCce--eeeeecccccceeEE
Q 047355 30 PWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMA--SVKEFEAHEDYIRSL 107 (312)
Q Consensus 30 ~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~--~~~~~~~h~~~i~~~ 107 (312)
-+|++++.|.+||+|...++.+.++++..++.|+.+...|+++.|++|++ ..||+||+.+.. ++..+++|++.|+++
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaV 89 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAV 89 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEE
Confidence 46889999999999999999999999999999999999999999998877 579999998765 577899999999999
Q ss_pred EEecCCCEEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeCCCeEEEEEcCCCcceeee-ccc
Q 047355 108 AVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTL-DAH 186 (312)
Q Consensus 108 ~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~-~~~ 186 (312)
.|+-+|+.++|||+||++||||++.. .+.+ .-.|..+|..+..+|. ...|++|..+|.|++||+.+......+ +..
T Consensus 90 gF~~dgrWMyTgseDgt~kIWdlR~~-~~qR-~~~~~spVn~vvlhpn-QteLis~dqsg~irvWDl~~~~c~~~liPe~ 166 (311)
T KOG0315|consen 90 GFQCDGRWMYTGSEDGTVKIWDLRSL-SCQR-NYQHNSPVNTVVLHPN-QTELISGDQSGNIRVWDLGENSCTHELIPED 166 (311)
T ss_pred EEeecCeEEEecCCCceEEEEeccCc-ccch-hccCCCCcceEEecCC-cceEEeecCCCcEEEEEccCCccccccCCCC
Confidence 99999999999999999999999863 3333 3446689999999995 468999999999999999987554433 333
Q ss_pred ccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCC------eEEEEecccccCeEEEEEeCCCcEEEEEeCCCcEEEEeC
Q 047355 187 EKGINCIDYFITSDKVYLITGSDDFTVKVWDYETK------TCVQILEGHTNNVTAVCFHPELRIIITASEDGTILIWNA 260 (312)
Q Consensus 187 ~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~------~~~~~~~~h~~~i~~l~~~~~~~~l~s~s~dg~v~iwd~ 260 (312)
...+.++. ..+||.+++++...|+.++|++-+. +++..++.|++.|..+.+||++++||++|+|.+++||+.
T Consensus 167 ~~~i~sl~--v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~ 244 (311)
T KOG0315|consen 167 DTSIQSLT--VMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNT 244 (311)
T ss_pred CcceeeEE--EcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEec
Confidence 45566665 5789999999999999999997543 456778899999999999999999999999999999999
Q ss_pred CCc-ceeeecccCccceEEEEEecCCCeEEEEecCCeEEEEecc
Q 047355 261 TTF-RLQNTLSSGLERVWSIGYKKGSNQVAFGCDNGTLIVKIGN 303 (312)
Q Consensus 261 ~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~v~~~~ 303 (312)
.++ ++...+++|..-+|.++||.||.+|++|+.|++.++|=..
T Consensus 245 ~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~ 288 (311)
T KOG0315|consen 245 DDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLS 288 (311)
T ss_pred CCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccc
Confidence 987 7888899999999999999999999999999999988543
No 10
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-42 Score=277.74 Aligned_cols=291 Identities=27% Similarity=0.452 Sum_probs=269.1
Q ss_pred hhhhhhcccCcEEEEEEcCCCCeEEEEecCCeEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEecCCCeEEEEEc
Q 047355 9 IEKEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDY 88 (312)
Q Consensus 9 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~ 88 (312)
+...+.+|...|..+-|||+-..++++++|++|++||+.+++....+++|...+..+.|...|++|++++.|=.+++||.
T Consensus 100 l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~ 179 (406)
T KOG0295|consen 100 LVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDF 179 (406)
T ss_pred chhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeH
Confidence 44457788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cC-ceeeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeCCC
Q 047355 89 NT-MASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDG 167 (312)
Q Consensus 89 ~~-~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg 167 (312)
++ .++++.+.+|+..|.++.|-|.+.++++++.|.+|+.|+..++ .+.+.+.+|...+..+..+. ++.++++|+.|.
T Consensus 180 ~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg-~cv~t~~~h~ewvr~v~v~~-DGti~As~s~dq 257 (406)
T KOG0295|consen 180 DTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTG-YCVKTFPGHSEWVRMVRVNQ-DGTIIASCSNDQ 257 (406)
T ss_pred HHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccc-eeEEeccCchHhEEEEEecC-CeeEEEecCCCc
Confidence 87 5677888899999999999999999999999999999999877 67889999999888888775 678999999999
Q ss_pred eEEEEEcCCCcceeeecccccceeEEEEEEcC-------------CceEEEEEeCCCeEEEEeCCCCeEEEEecccccCe
Q 047355 168 TIQIWNMDSSAAKFTLDAHEKGINCIDYFITS-------------DKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNV 234 (312)
Q Consensus 168 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-------------~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~i 234 (312)
+|++|-+.+.++...+..|+.++.|++|.+.. .+.++++++.|++|++||+.++.++.++.+|...|
T Consensus 258 tl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwV 337 (406)
T KOG0295|consen 258 TLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWV 337 (406)
T ss_pred eEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEeccccee
Confidence 99999999998888899999999999875321 23689999999999999999999999999999999
Q ss_pred EEEEEeCCCcEEEEEeCCCcEEEEeCCCcceeeecccCccceEEEEEecCCCeEEEEecCCeEEEEe
Q 047355 235 TAVCFHPELRIIITASEDGTILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGCDNGTLIVKI 301 (312)
Q Consensus 235 ~~l~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~v~~ 301 (312)
..++|+|.|++|+++.+|+++++||+++.+..+++..|..-|.+++|..+--++++|+-|.++.||=
T Consensus 338 r~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 338 RGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred eeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeee
Confidence 9999999999999999999999999999999999999999999999999999999999999999884
No 11
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=7.9e-44 Score=288.12 Aligned_cols=282 Identities=28% Similarity=0.481 Sum_probs=249.2
Q ss_pred cCcEEEEEEcCCCCeEEEEecCCeEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEecCCCeEEEEEccCceeeee
Q 047355 17 SDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKE 96 (312)
Q Consensus 17 ~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~ 96 (312)
.-.|..+.|.|+|++|++|+..|.+.+|+...-.-...++.|+.+|+++.|+.++.++++|+.+|.|++|+..- ..++.
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm-nnVk~ 174 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM-NNVKI 174 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccch-hhhHH
Confidence 45899999999999999999999999999865444445678999999999999999999999999999998764 45556
Q ss_pred ecccc-cceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeCCCeEEEEEcC
Q 047355 97 FEAHE-DYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMD 175 (312)
Q Consensus 97 ~~~h~-~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~ 175 (312)
+.+|. ..|++++|+|....++++|+||+|+|||.....+ ...+.+|.-.|.++.|+|.. .+++++|.|..|++||.+
T Consensus 175 ~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~ke-e~vL~GHgwdVksvdWHP~k-gLiasgskDnlVKlWDpr 252 (464)
T KOG0284|consen 175 IQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKE-ERVLRGHGWDVKSVDWHPTK-GLIASGSKDNLVKLWDPR 252 (464)
T ss_pred hhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCch-hheeccCCCCcceeccCCcc-ceeEEccCCceeEeecCC
Confidence 66555 8999999999999999999999999999876533 34568999999999999964 799999999999999999
Q ss_pred CCcceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEecccccCeEEEEEeC-CCcEEEEEeCCCc
Q 047355 176 SSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHP-ELRIIITASEDGT 254 (312)
Q Consensus 176 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~i~~l~~~~-~~~~l~s~s~dg~ 254 (312)
++.++.++.+|...|..+.| .+++.+|+++|.|..++++|+++.+-++.+++|...|++++|+| ...+|.+|+.||.
T Consensus 253 Sg~cl~tlh~HKntVl~~~f--~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgs 330 (464)
T KOG0284|consen 253 SGSCLATLHGHKNTVLAVKF--NPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGS 330 (464)
T ss_pred CcchhhhhhhccceEEEEEE--cCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCc
Confidence 99999999999999998875 67789999999999999999998888999999999999999999 5678999999999
Q ss_pred EEEEeCCCcceeeecc-cCccceEEEEEecCCCeEEEEecCCeEEEEecc
Q 047355 255 ILIWNATTFRLQNTLS-SGLERVWSIGYKKGSNQVAFGCDNGTLIVKIGN 303 (312)
Q Consensus 255 v~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~g~i~v~~~~ 303 (312)
|..|.+...+.+..+. +|...||+++|+|-|-.|++|+.|.++++|...
T Consensus 331 vvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 331 VVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred eEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 9999987444444433 578899999999999999999999999999765
No 12
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=4.9e-41 Score=276.46 Aligned_cols=278 Identities=25% Similarity=0.374 Sum_probs=251.8
Q ss_pred CcEEEEEEcCCCCeEEEEecCCeEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEecCCCeEEEEEccCceeeeee
Q 047355 18 DRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEF 97 (312)
Q Consensus 18 ~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~ 97 (312)
..|++++|+.+|..|++|.+||.++||+.+. ....++..|.+||.+++|+.+|.+|++++.|+++.+||..++...+.+
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G-~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f 314 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDG-NLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQF 314 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEecCc-hhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEee
Confidence 5899999999999999999999999999865 456788899999999999999999999999999999999999998999
Q ss_pred cccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeCCCeEEEEEcCCC
Q 047355 98 EAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSS 177 (312)
Q Consensus 98 ~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~ 177 (312)
+-|+.+-.++.|-.+. .+++.+.|+.++++.+... .+..++.+|.+.|..+.|+|. +.+|+++|.|++++||.....
T Consensus 315 ~~~s~~~lDVdW~~~~-~F~ts~td~~i~V~kv~~~-~P~~t~~GH~g~V~alk~n~t-g~LLaS~SdD~TlkiWs~~~~ 391 (524)
T KOG0273|consen 315 EFHSAPALDVDWQSND-EFATSSTDGCIHVCKVGED-RPVKTFIGHHGEVNALKWNPT-GSLLASCSDDGTLKIWSMGQS 391 (524)
T ss_pred eeccCCccceEEecCc-eEeecCCCceEEEEEecCC-CcceeeecccCceEEEEECCC-CceEEEecCCCeeEeeecCCC
Confidence 9999887888887654 4788999999999987654 667889999999999999995 589999999999999999988
Q ss_pred cceeeecccccceeEEEEEEcC-------CceEEEEEeCCCeEEEEeCCCCeEEEEecccccCeEEEEEeCCCcEEEEEe
Q 047355 178 AAKFTLDAHEKGINCIDYFITS-------DKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITAS 250 (312)
Q Consensus 178 ~~~~~~~~~~~~v~~~~~~~~~-------~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~s 250 (312)
.....+.+|.+.++.+.|.+.. .+..+++++.|++|++||+..+.+++.+..|..+|++++|+|+++++|+|+
T Consensus 392 ~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs 471 (524)
T KOG0273|consen 392 NSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGS 471 (524)
T ss_pred cchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecC
Confidence 8889999999999988875432 356799999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEeCCCcceeeecccCccceEEEEEecCCCeEEEEecCCeEEEE
Q 047355 251 EDGTILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGCDNGTLIVK 300 (312)
Q Consensus 251 ~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~v~ 300 (312)
.||.|.+|+++++++.+...+. ..+..|.|+.+|++|..+-.||.+.|.
T Consensus 472 ~dg~V~iws~~~~~l~~s~~~~-~~Ifel~Wn~~G~kl~~~~sd~~vcvl 520 (524)
T KOG0273|consen 472 LDGCVHIWSTKTGKLVKSYQGT-GGIFELCWNAAGDKLGACASDGSVCVL 520 (524)
T ss_pred CCCeeEeccccchheeEeecCC-CeEEEEEEcCCCCEEEEEecCCCceEE
Confidence 9999999999999998877654 458999999999999999999987764
No 13
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=3.5e-41 Score=268.86 Aligned_cols=289 Identities=18% Similarity=0.384 Sum_probs=260.2
Q ss_pred hhhhhhcccCcEEEEEEcCCCCeEEEEecCCeEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEecCCCeEEEEEc
Q 047355 9 IEKEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDY 88 (312)
Q Consensus 9 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~ 88 (312)
+-+.+.+|.+-|.++++.|...++++|+.|++++|||+.++++..++.+|-..++.+++++.-.+++++++|+.|+.||+
T Consensus 143 l~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDL 222 (460)
T KOG0285|consen 143 LYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDL 222 (460)
T ss_pred ehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEec
Confidence 44667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCceeeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeCCCe
Q 047355 89 NTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGT 168 (312)
Q Consensus 89 ~~~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~ 168 (312)
+..+.+..+-+|-..|.+++.+|....|+||+.|.++|+||+++. ..+..+.+|...|.++.+.|.+ ..+++||.|++
T Consensus 223 e~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr-~~V~~l~GH~~~V~~V~~~~~d-pqvit~S~D~t 300 (460)
T KOG0285|consen 223 EYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTR-ASVHVLSGHTNPVASVMCQPTD-PQVITGSHDST 300 (460)
T ss_pred hhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeeccc-ceEEEecCCCCcceeEEeecCC-CceEEecCCce
Confidence 999999999999999999999999999999999999999999876 5567899999999999999876 57999999999
Q ss_pred EEEEEcCCCcceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEecccccCeEEEEEeCCCcEEEE
Q 047355 169 IQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIIT 248 (312)
Q Consensus 169 v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s 248 (312)
|++||++.++...++..|...+.+++. .|....+|+++.| .|+-|++..+..++.+.+|+.-|++++.+.|+ ++++
T Consensus 301 vrlWDl~agkt~~tlt~hkksvral~l--hP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~ 376 (460)
T KOG0285|consen 301 VRLWDLRAGKTMITLTHHKKSVRALCL--HPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVS 376 (460)
T ss_pred EEEeeeccCceeEeeecccceeeEEec--CCchhhhhccCCc-cceeccCCccchhhccccccceeeeeeeccCc-eEEE
Confidence 999999999999999999999998874 6677788888877 59999999999999999999999999999886 6889
Q ss_pred EeCCCcEEEEeCCCcceeeec---c--cC---ccceEEEEEecCCCeEEEEecCCeEEEEecc
Q 047355 249 ASEDGTILIWNATTFRLQNTL---S--SG---LERVWSIGYKKGSNQVAFGCDNGTLIVKIGN 303 (312)
Q Consensus 249 ~s~dg~v~iwd~~~~~~~~~~---~--~~---~~~v~~~~~~~~~~~l~~~~~~g~i~v~~~~ 303 (312)
|++.|.+.+||.+++-..+.. . +. ...+.+..|...|..|++|..|.+|.++--+
T Consensus 377 G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keD 439 (460)
T KOG0285|consen 377 GGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKED 439 (460)
T ss_pred cCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEecc
Confidence 999999999999875332222 1 11 2358899999999999999999999988654
No 14
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=2e-39 Score=270.30 Aligned_cols=287 Identities=31% Similarity=0.550 Sum_probs=257.4
Q ss_pred hhhhhcccCcEEEEEEcCCCCeEEEEecCCeEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEecCCCeEEEEEcc
Q 047355 10 EKEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYN 89 (312)
Q Consensus 10 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~ 89 (312)
.+.+.+|.++|.+++|+|++++|++++.||.|++|++.+.+....+..+...+..+.|.++++.+++++.||.|++|++.
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~ 81 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE 81 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence 35677899999999999999999999999999999998887777788888888899999999999999999999999999
Q ss_pred CceeeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeCCCeE
Q 047355 90 TMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTI 169 (312)
Q Consensus 90 ~~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v 169 (312)
+.+....+..|...|.++.+++++.++++++.|+.+++||+... .....+..|...+..+.|+|. ..++++++.|+.|
T Consensus 82 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~~~~i 159 (289)
T cd00200 82 TGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETG-KCLTTLRGHTDWVNSVAFSPD-GTFVASSSQDGTI 159 (289)
T ss_pred cccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCc-EEEEEeccCCCcEEEEEEcCc-CCEEEEEcCCCcE
Confidence 88788888899999999999999888888888999999998754 455667788889999999985 5677777779999
Q ss_pred EEEEcCCCcceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEecccccCeEEEEEeCCCcEEEEE
Q 047355 170 QIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITA 249 (312)
Q Consensus 170 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~ 249 (312)
++||+++.+....+..|...+.++.+ .+++..+++++.|+.|++||++.++.+..+..|...+.+++|+|++.+++++
T Consensus 160 ~i~d~~~~~~~~~~~~~~~~i~~~~~--~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 237 (289)
T cd00200 160 KLWDLRTGKCVATLTGHTGEVNSVAF--SPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASG 237 (289)
T ss_pred EEEEccccccceeEecCccccceEEE--CCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEE
Confidence 99999988888888888888888875 6777788888889999999999888888888899999999999998888888
Q ss_pred eCCCcEEEEeCCCcceeeecccCccceEEEEEecCCCeEEEEecCCeEEEE
Q 047355 250 SEDGTILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGCDNGTLIVK 300 (312)
Q Consensus 250 s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~v~ 300 (312)
+.|+.|++|++.+++....+..+...+.+++|+|+++.|++++.||.+++|
T Consensus 238 ~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw 288 (289)
T cd00200 238 SEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIW 288 (289)
T ss_pred cCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEec
Confidence 889999999999888888888888899999999999999999999999887
No 15
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.4e-41 Score=295.56 Aligned_cols=271 Identities=25% Similarity=0.450 Sum_probs=239.3
Q ss_pred cCcEEEEEEcCCCCeEEEEecCCeEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEecCCCeEEEEEccCceeeee
Q 047355 17 SDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKE 96 (312)
Q Consensus 17 ~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~ 96 (312)
...+.|..|++|++.||.|..|..|++|.+...+. +.+.. ..+.. .+=+++.|-.+...|.++....++
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl-~~lk~-------~~~l~---~~d~~sad~~~~~~D~~~~~~~~~ 446 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKL-KKLKD-------ASDLS---NIDTESADVDVDMLDDDSSGTSRT 446 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecchhhh-ccccc-------hhhhc---cccccccchhhhhccccCCceeEE
Confidence 46799999999999999999999999999875432 22221 11111 122344455567777777777778
Q ss_pred ecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeCCCeEEEEEcCC
Q 047355 97 FEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDS 176 (312)
Q Consensus 97 ~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~ 176 (312)
+-+|+++|..+.|+|+.++|+++|.|+++|+|.+.+. .+...+.+|..+|+.+.|+|. +.+|+|+|.|++-++|....
T Consensus 447 L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~-s~~V~y~GH~~PVwdV~F~P~-GyYFatas~D~tArLWs~d~ 524 (707)
T KOG0263|consen 447 LYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTW-SCLVIYKGHLAPVWDVQFAPR-GYYFATASHDQTARLWSTDH 524 (707)
T ss_pred eecCCCceeeeeecccccceeeccCCcceeeeecccc-eeEEEecCCCcceeeEEecCC-ceEEEecCCCceeeeeeccc
Confidence 9999999999999999999999999999999998765 666778899999999999985 58999999999999999999
Q ss_pred CcceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEecccccCeEEEEEeCCCcEEEEEeCCCcEE
Q 047355 177 SAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITASEDGTIL 256 (312)
Q Consensus 177 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~s~dg~v~ 256 (312)
..+...+.+|...|.|+.| .|+..|+++||.|.+|++||..++..++.+.||.++|.+++|+|+|++|++|++||.|.
T Consensus 525 ~~PlRifaghlsDV~cv~F--HPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~ 602 (707)
T KOG0263|consen 525 NKPLRIFAGHLSDVDCVSF--HPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIK 602 (707)
T ss_pred CCchhhhcccccccceEEE--CCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEE
Confidence 9999999999999999986 67889999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCcceeeecccCccceEEEEEecCCCeEEEEecCCeEEEEec
Q 047355 257 IWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGCDNGTLIVKIG 302 (312)
Q Consensus 257 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~v~~~ 302 (312)
+||+.++++..++.+|.+.+.++.|+.+|+.||+|+.|.+|++|=.
T Consensus 603 iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~ 648 (707)
T KOG0263|consen 603 IWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDL 648 (707)
T ss_pred EEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEc
Confidence 9999999999999999999999999999999999999999999943
No 16
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.6e-39 Score=250.47 Aligned_cols=286 Identities=23% Similarity=0.367 Sum_probs=239.9
Q ss_pred hhhhhhhhcccCcEEEEEEcCC-CCeEEEEecCCeEEEEeccCC---ceeeeE-EecCCceeEEEEeeCCcEEEEecCCC
Q 047355 7 LQIEKEFIQKSDRVKSVDFHPT-QPWVLASLYSGTVCIWNYHSQ---TTEKSV-KVTDSPVRTAKFVAREHWIVCGSDDK 81 (312)
Q Consensus 7 ~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~v~iw~~~~~---~~~~~~-~~~~~~v~~~~~~~~~~~l~~g~~dg 81 (312)
+...+.+.+|.+++..++|||- |..|++|+.|..||+|+.... .+...+ ..|...|++++|+|.+++|++|+.|.
T Consensus 4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~ 83 (312)
T KOG0645|consen 4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDA 83 (312)
T ss_pred ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccc
Confidence 4456678899999999999998 899999999999999998742 222222 24677899999999999999999999
Q ss_pred eEEEEEcc--CceeeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCC--CCceeeeEecCCccceEEEEeCCCCC
Q 047355 82 FIRVFDYN--TMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWE--KNWECTQTFEGHSHYVMQSAFNPKDL 157 (312)
Q Consensus 82 ~i~iwd~~--~~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~--~~~~~~~~~~~~~~~v~~~~~~~~~~ 157 (312)
++.+|.-. ..+++..+++|+.+|.+++|+++|.+|||+++|+.|-||.+. ...++...+++|...|..+.|+|..
T Consensus 84 t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~- 162 (312)
T KOG0645|consen 84 TVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTE- 162 (312)
T ss_pred eEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCc-
Confidence 99999765 346888999999999999999999999999999999999986 4456778899999999999999964
Q ss_pred CEEEEEeCCCeEEEEEcCC-C--cceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEecccccCe
Q 047355 158 NTFASASLDGTIQIWNMDS-S--AAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNV 234 (312)
Q Consensus 158 ~~~~s~s~dg~v~iwd~~~-~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~i 234 (312)
.+|+++|.|.+|++|.-.. . .+.+++.+|...|.+++| .+.|..|++++.|++|++|-..+.- -..|..++
T Consensus 163 dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F--~~~G~rl~s~sdD~tv~Iw~~~~~~----~~~~sr~~ 236 (312)
T KOG0645|consen 163 DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAF--DNIGSRLVSCSDDGTVSIWRLYTDL----SGMHSRAL 236 (312)
T ss_pred ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEe--cCCCceEEEecCCcceEeeeeccCc----chhcccce
Confidence 7999999999999998763 2 467889999998998875 5678889999999999999765221 12377889
Q ss_pred EEEEEeCCCcEEEEEeCCCcEEEEeCCC------cceee-ecccCccceEEEEEecC-CCeEEEEecCCeEEEEe
Q 047355 235 TAVCFHPELRIIITASEDGTILIWNATT------FRLQN-TLSSGLERVWSIGYKKG-SNQVAFGCDNGTLIVKI 301 (312)
Q Consensus 235 ~~l~~~~~~~~l~s~s~dg~v~iwd~~~------~~~~~-~~~~~~~~v~~~~~~~~-~~~l~~~~~~g~i~v~~ 301 (312)
+.+.|. ...||+++.|+.|++|.... +++.. .-..|...|.+++|+|. .++|++|++||++++|-
T Consensus 237 Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~ 309 (312)
T KOG0645|consen 237 YDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWE 309 (312)
T ss_pred Eeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEE
Confidence 999998 46799999999999997553 23322 33456678999999995 89999999999999984
No 17
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.1e-39 Score=254.77 Aligned_cols=285 Identities=22% Similarity=0.399 Sum_probs=248.5
Q ss_pred hhhhhcccCcEEEEEEcCCCCeEEEEecCCeEEEEec-cCCceeeeEEecCCceeEEEEeeCCcEEEEecCCCeEEEEEc
Q 047355 10 EKEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNY-HSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDY 88 (312)
Q Consensus 10 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~ 88 (312)
...+.+|.+.|+.+.|+|+|+.+++|+.|..|.+|+. ...+....+.+|.+.|..+.|.+++..|++++.|.+++.||.
T Consensus 40 ~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~ 119 (338)
T KOG0265|consen 40 IMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDA 119 (338)
T ss_pred hhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEec
Confidence 3456789999999999999999999999999999994 445556677899999999999999999999999999999999
Q ss_pred cCceeeeeecccccceeEEEEecCCC-EEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeCCC
Q 047355 89 NTMASVKEFEAHEDYIRSLAVHPTFP-FVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDG 167 (312)
Q Consensus 89 ~~~~~~~~~~~h~~~i~~~~~~~~~~-~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg 167 (312)
++++..+++++|.+.|+++....-+. ++.+++.|+++|+||++.. ...++++ ..-.+..+.|.. ....+.+|+-|+
T Consensus 120 ~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k-~~~~t~~-~kyqltAv~f~d-~s~qv~sggIdn 196 (338)
T KOG0265|consen 120 ETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKK-EAIKTFE-NKYQLTAVGFKD-TSDQVISGGIDN 196 (338)
T ss_pred ccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeeccc-chhhccc-cceeEEEEEecc-cccceeeccccC
Confidence 99999999999999999998655554 5679999999999999854 3344433 233567788876 457899999999
Q ss_pred eEEEEEcCCCcceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCC----CeEEEEecccc----cCeEEEEE
Q 047355 168 TIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYET----KTCVQILEGHT----NNVTAVCF 239 (312)
Q Consensus 168 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~----~~~~~~~~~h~----~~i~~l~~ 239 (312)
.|++||++.+.....+.+|...|+.+. .+++|.++.+-+.|.++++||++. ..++..+.+|. ......+|
T Consensus 197 ~ikvWd~r~~d~~~~lsGh~DtIt~ls--ls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~csw 274 (338)
T KOG0265|consen 197 DIKVWDLRKNDGLYTLSGHADTITGLS--LSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSW 274 (338)
T ss_pred ceeeeccccCcceEEeecccCceeeEE--eccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeec
Confidence 999999999999999999999999886 578899999999999999999874 34577777663 34557799
Q ss_pred eCCCcEEEEEeCCCcEEEEeCCCcceeeecccCccceEEEEEecCCCeEEEEecCCeEEE
Q 047355 240 HPELRIIITASEDGTILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGCDNGTLIV 299 (312)
Q Consensus 240 ~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~v 299 (312)
+|+++.+..|+.|+.+++||....+.+..+.+|...|.+++|+|....|.+++.|.+|++
T Consensus 275 sp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 275 SPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred cCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence 999999999999999999999888999999999999999999999999999999999875
No 18
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3e-39 Score=279.40 Aligned_cols=285 Identities=22% Similarity=0.398 Sum_probs=250.7
Q ss_pred cccCcEEEEEEcCCCCeEEEEecCCeEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEecCC-CeEEEEEccCcee
Q 047355 15 QKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDD-KFIRVFDYNTMAS 93 (312)
Q Consensus 15 ~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d-g~i~iwd~~~~~~ 93 (312)
+.+..|.+.+||+.-..|++|-..|...+|.+.....+..+...+.+|.++.|+..|+||+.|+.. |++.+|++.+...
T Consensus 263 ~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsY 342 (893)
T KOG0291|consen 263 QNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESY 342 (893)
T ss_pred ccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccce
Confidence 345789999999999999999999999999999999999999999999999999999999998764 8999999999888
Q ss_pred eeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeCCCeEEEEE
Q 047355 94 VKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWN 173 (312)
Q Consensus 94 ~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd 173 (312)
+.+.++|...+++++++|+|++++||+.||.||+||...+ -+..+|..|+..|..+.|.. .++.+++.|.||+||.||
T Consensus 343 VlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sg-fC~vTFteHts~Vt~v~f~~-~g~~llssSLDGtVRAwD 420 (893)
T KOG0291|consen 343 VLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSG-FCFVTFTEHTSGVTAVQFTA-RGNVLLSSSLDGTVRAWD 420 (893)
T ss_pred eeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCc-eEEEEeccCCCceEEEEEEe-cCCEEEEeecCCeEEeee
Confidence 8889999999999999999999999999999999998765 57789999999999999986 468999999999999999
Q ss_pred cCCCcceeeecccc-cceeEEEEEEcCCceEEEEEeCCC-eEEEEeCCCCeEEEEecccccCeEEEEEeCCCcEEEEEeC
Q 047355 174 MDSSAAKFTLDAHE-KGINCIDYFITSDKVYLITGSDDF-TVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITASE 251 (312)
Q Consensus 174 ~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~sg~~dg-~i~vwd~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~s~ 251 (312)
+.......+++... ....|++ .+|.|..+.+|+.|. .|.+|++++|+.+..+.||+++|.+++|+|++..|+++|.
T Consensus 421 lkRYrNfRTft~P~p~Qfscva--vD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SW 498 (893)
T KOG0291|consen 421 LKRYRNFRTFTSPEPIQFSCVA--VDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSW 498 (893)
T ss_pred ecccceeeeecCCCceeeeEEE--EcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccc
Confidence 99887777776543 2344554 567788888888775 6999999999999999999999999999999999999999
Q ss_pred CCcEEEEeCCCcceeeecccCccceEEEEEecCCCeEEEEecCCeEEEEecc
Q 047355 252 DGTILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGCDNGTLIVKIGN 303 (312)
Q Consensus 252 dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~v~~~~ 303 (312)
|.+||+||+-...-..+--.+...+..++|.|+|+.|++++-||.|-+|-.+
T Consensus 499 DkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~ 550 (893)
T KOG0291|consen 499 DKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIK 550 (893)
T ss_pred cceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhh
Confidence 9999999975532222222345678999999999999999999999987654
No 19
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=6.2e-40 Score=269.97 Aligned_cols=285 Identities=20% Similarity=0.335 Sum_probs=250.0
Q ss_pred hhcccCcEEEEEEcCCCC-eEEEEecCCeEEEEeccCC--ceee--eEE----------ecCCceeEEEEeeCCcEEEEe
Q 047355 13 FIQKSDRVKSVDFHPTQP-WVLASLYSGTVCIWNYHSQ--TTEK--SVK----------VTDSPVRTAKFVAREHWIVCG 77 (312)
Q Consensus 13 ~~~~~~~i~~~~~~~~~~-~l~~~~~dg~v~iw~~~~~--~~~~--~~~----------~~~~~v~~~~~~~~~~~l~~g 77 (312)
...|..+|.+.+|+|-.. .|++|+.|-+.++|++... .... .++ .....|++++|+.+|..|++|
T Consensus 174 vl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG 253 (524)
T KOG0273|consen 174 VLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATG 253 (524)
T ss_pred eccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEe
Confidence 344889999999999776 8889999999999998641 1111 111 122469999999999999999
Q ss_pred cCCCeEEEEEccCceeeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCC
Q 047355 78 SDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDL 157 (312)
Q Consensus 78 ~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 157 (312)
+.||.+++|+... ..+..+..|.++|.++.|+..|.+|++++-|+++.+||..++ ...+.+.-|...-..+.|-. .
T Consensus 254 ~~~G~~riw~~~G-~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g-~~~q~f~~~s~~~lDVdW~~--~ 329 (524)
T KOG0273|consen 254 SEDGEARIWNKDG-NLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTG-TVKQQFEFHSAPALDVDWQS--N 329 (524)
T ss_pred ecCcEEEEEecCc-hhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCc-eEEEeeeeccCCccceEEec--C
Confidence 9999999999764 567788999999999999999999999999999999998665 55566777777766777764 3
Q ss_pred CEEEEEeCCCeEEEEEcCCCcceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEecccccCeEEE
Q 047355 158 NTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAV 237 (312)
Q Consensus 158 ~~~~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~i~~l 237 (312)
..|++++.|+.|+++.+....+..++.+|...|+++.| .|.+.+|++++.|+++++|++....+.+.+.+|...|..+
T Consensus 330 ~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~--n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~ 407 (524)
T KOG0273|consen 330 DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKW--NPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTI 407 (524)
T ss_pred ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEE--CCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeE
Confidence 67999999999999999999999999999999999986 5678999999999999999998888999999999999999
Q ss_pred EEeCCCc---------EEEEEeCCCcEEEEeCCCcceeeecccCccceEEEEEecCCCeEEEEecCCeEEEEecc
Q 047355 238 CFHPELR---------IIITASEDGTILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGCDNGTLIVKIGN 303 (312)
Q Consensus 238 ~~~~~~~---------~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~v~~~~ 303 (312)
.|+|+++ .+++++.|++|++||+..+.+++++..|.++|++|+|+|+|.+||+|+.||.+.+|-.+
T Consensus 408 ~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~ 482 (524)
T KOG0273|consen 408 KWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTK 482 (524)
T ss_pred eecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEecccc
Confidence 9999764 69999999999999999999999999999999999999999999999999999988544
No 20
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.9e-40 Score=284.24 Aligned_cols=292 Identities=25% Similarity=0.408 Sum_probs=259.5
Q ss_pred hhhhhhhhhcccCcEEEEEEc-CCCCeEEEEecCCeEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEecCCCeEE
Q 047355 6 ELQIEKEFIQKSDRVKSVDFH-PTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIR 84 (312)
Q Consensus 6 ~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~ 84 (312)
++.+.+++.+..+.|..++|- |..++|+.++..+.+|+++..+..+. .+.+|...|.++....++.+|++|+.|.+++
T Consensus 312 ~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svi 390 (775)
T KOG0319|consen 312 ELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVI 390 (775)
T ss_pred ccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEE
Confidence 466778899999999999995 67899999999999999998876654 7888999999998666778999999999999
Q ss_pred EEEccCc----eeeeeecccccceeEEEEecCC-CEEEEEeCCCcEEEEeCCCCce----e----eeEecCCccceEEEE
Q 047355 85 VFDYNTM----ASVKEFEAHEDYIRSLAVHPTF-PFVLTASDDKLIKLWDWEKNWE----C----TQTFEGHSHYVMQSA 151 (312)
Q Consensus 85 iwd~~~~----~~~~~~~~h~~~i~~~~~~~~~-~~l~t~s~d~~v~iwd~~~~~~----~----~~~~~~~~~~v~~~~ 151 (312)
+|.++.. .++....+|+..|.+++++..+ ++++++|.|+++++|++....+ . ......|...|.+++
T Consensus 391 lWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Va 470 (775)
T KOG0319|consen 391 LWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVA 470 (775)
T ss_pred EEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceE
Confidence 9988443 2445667999999999996544 6899999999999999875211 1 113357889999999
Q ss_pred eCCCCCCEEEEEeCCCeEEEEEcCCCcceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEecccc
Q 047355 152 FNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHT 231 (312)
Q Consensus 152 ~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~ 231 (312)
.+|++ .++++||.|.+.+||++........+.+|+.++.|+.| ++....++++|.|++|++|.+.+..|++++.||.
T Consensus 471 ia~nd-kLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~F--s~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~ 547 (775)
T KOG0319|consen 471 IAPND-KLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSF--SKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHT 547 (775)
T ss_pred ecCCC-ceEEecccccceeeecccCceEEEEeeCCccceEEEEe--ccccceeEeccCCceEEEEEeccceeeeeecCcc
Confidence 99964 89999999999999999988889999999999999986 5667899999999999999999999999999999
Q ss_pred cCeEEEEEeCCCcEEEEEeCCCcEEEEeCCCcceeeecccCccceEEEEEecCCCeEEEEecCCeEEEEe
Q 047355 232 NNVTAVCFHPELRIIITASEDGTILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGCDNGTLIVKI 301 (312)
Q Consensus 232 ~~i~~l~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~v~~ 301 (312)
..|..+.|-.+++.|++++.||.+++|++++.+.+.++..|..+||+++-+|.+..+++|+.||.+.+|-
T Consensus 548 ~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 548 SAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred ceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEee
Confidence 9999999999999999999999999999999999999999999999999999999999999999999874
No 21
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=4.7e-39 Score=284.31 Aligned_cols=283 Identities=25% Similarity=0.482 Sum_probs=254.0
Q ss_pred cCcEEEEEEcCCCCeEEEEecCCeEEEEeccCCc--eeeeEEecCCceeEEEEeeCCcEEEEecCCCeEEEEEc-cCcee
Q 047355 17 SDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQT--TEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDY-NTMAS 93 (312)
Q Consensus 17 ~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~-~~~~~ 93 (312)
...|.++.|+|+|+.+++++.|+.+++|+....+ ....+..|...|..++|+++++++++|+.|++|++||+ ..+..
T Consensus 159 ~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~ 238 (456)
T KOG0266|consen 159 CPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRN 238 (456)
T ss_pred cCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeE
Confidence 6789999999999999999999999999997666 56666788899999999999999999999999999999 55588
Q ss_pred eeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeCCCeEEEEE
Q 047355 94 VKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWN 173 (312)
Q Consensus 94 ~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd 173 (312)
++++++|...|++++|+|.++++++|+.|++|++||+++. .+...+.+|...|..+.|++ +++.+++++.|+.|++||
T Consensus 239 ~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~-~~~~~l~~hs~~is~~~f~~-d~~~l~s~s~d~~i~vwd 316 (456)
T KOG0266|consen 239 LKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTG-ECVRKLKGHSDGISGLAFSP-DGNLLVSASYDGTIRVWD 316 (456)
T ss_pred EEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCC-eEEEeeeccCCceEEEEECC-CCCEEEEcCCCccEEEEE
Confidence 8999999999999999999999999999999999999874 77889999999999999998 568999999999999999
Q ss_pred cCCCc--ceeeecccccc--eeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEecccccC---eEEEEEeCCCcEE
Q 047355 174 MDSSA--AKFTLDAHEKG--INCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNN---VTAVCFHPELRII 246 (312)
Q Consensus 174 ~~~~~--~~~~~~~~~~~--v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~---i~~l~~~~~~~~l 246 (312)
+.++. +...+..+... +.++. +++++.++++++.|+.+++||+..+.+...+.+|... +.+..+++.++++
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~--fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 394 (456)
T KOG0266|consen 317 LETGSKLCLKLLSGAENSAPVTSVQ--FSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLI 394 (456)
T ss_pred CCCCceeeeecccCCCCCCceeEEE--ECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeE
Confidence 99988 45666666555 66665 4789999999999999999999999999999999875 4445557889999
Q ss_pred EEEeCCCcEEEEeCCCcceeeecccC-ccceEEEEEecCCCeEEEEe--cCCeEEEEecc
Q 047355 247 ITASEDGTILIWNATTFRLQNTLSSG-LERVWSIGYKKGSNQVAFGC--DNGTLIVKIGN 303 (312)
Q Consensus 247 ~s~s~dg~v~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~--~~g~i~v~~~~ 303 (312)
++|+.|+.|++||..++..+..+..| ...+..++++|..+++++++ .|+.+++|-.+
T Consensus 395 ~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 395 YSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred EEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 99999999999999999888999999 88999999999999999999 68888888654
No 22
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=8.7e-41 Score=265.95 Aligned_cols=269 Identities=26% Similarity=0.457 Sum_probs=238.8
Q ss_pred ccCcEEEEEEcCCCCeEEEEecCCeEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEecCCCeEEEEEccCceeee
Q 047355 16 KSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVK 95 (312)
Q Consensus 16 ~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~ 95 (312)
.++.|+++.++ ...+++|..|.+|+|||..+....+.+.+|.+.|.++.|.. +.|++|+.|.+|++||++++++++
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~--rviisGSSDsTvrvWDv~tge~l~ 271 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDE--RVIVSGSSDSTVRVWDVNTGEPLN 271 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccc--eEEEecCCCceEEEEeccCCchhh
Confidence 45789999994 55799999999999999999888899999999999888874 589999999999999999999999
Q ss_pred eecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCc--eeeeEecCCccceEEEEeCCCCCCEEEEEeCCCeEEEEE
Q 047355 96 EFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNW--ECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWN 173 (312)
Q Consensus 96 ~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd 173 (312)
++-.|...|..+.|+ +.+++|+|.|.++.+||+.... .+...+.+|...|..+.|+. .+++++|.|.+|++|+
T Consensus 272 tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~---kyIVsASgDRTikvW~ 346 (499)
T KOG0281|consen 272 TLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD---KYIVSASGDRTIKVWS 346 (499)
T ss_pred HHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc---ceEEEecCCceEEEEe
Confidence 999999999999997 4579999999999999986532 22345789999999999874 4899999999999999
Q ss_pred cCCCcceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEecccccCeEEEEEeCCCcEEEEEeCCC
Q 047355 174 MDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITASEDG 253 (312)
Q Consensus 174 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~s~dg 253 (312)
+.+.+.+.++.+|+.++.|+.+ .++++++|+.|.+|++||++.|.++..++||++-|+++.|+. +.+++|+.||
T Consensus 347 ~st~efvRtl~gHkRGIAClQY----r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~--krIVSGaYDG 420 (499)
T KOG0281|consen 347 TSTCEFVRTLNGHKRGIACLQY----RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN--KRIVSGAYDG 420 (499)
T ss_pred ccceeeehhhhcccccceehhc----cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeecC--ceeeeccccc
Confidence 9999999999999999999875 679999999999999999999999999999999999999965 6699999999
Q ss_pred cEEEEeCCCcce---------eeecccCccceEEEEEecCCCeEEEEecCCeEEEEe
Q 047355 254 TILIWNATTFRL---------QNTLSSGLERVWSIGYKKGSNQVAFGCDNGTLIVKI 301 (312)
Q Consensus 254 ~v~iwd~~~~~~---------~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~v~~ 301 (312)
+|++||+.+..- +.++..|.++|..+.| |.-+|++++.|.+|.||-
T Consensus 421 kikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWd 475 (499)
T KOG0281|consen 421 KIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWD 475 (499)
T ss_pred eEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEE
Confidence 999999987532 3455677789999988 566999999999999985
No 23
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=1.2e-37 Score=294.20 Aligned_cols=282 Identities=17% Similarity=0.258 Sum_probs=234.4
Q ss_pred hhcccCcEEEEEEcCCCCeEEEEecCCeEEEEeccCCc--------eeeeEEecCCceeEEEEee-CCcEEEEecCCCeE
Q 047355 13 FIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQT--------TEKSVKVTDSPVRTAKFVA-REHWIVCGSDDKFI 83 (312)
Q Consensus 13 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~--------~~~~~~~~~~~v~~~~~~~-~~~~l~~g~~dg~i 83 (312)
+..|...|.+++|+|+++++++|+.|++|+||+..... ....+ .+...+..+.|++ .+.+|++++.||+|
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~~las~~~Dg~v 557 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL-ASRSKLSGICWNSYIKSQVASSNFEGVV 557 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEe-cccCceeeEEeccCCCCEEEEEeCCCeE
Confidence 44578899999999999999999999999999975321 11122 2345688888986 47889999999999
Q ss_pred EEEEccCceeeeeecccccceeEEEEec-CCCEEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEE
Q 047355 84 RVFDYNTMASVKEFEAHEDYIRSLAVHP-TFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFAS 162 (312)
Q Consensus 84 ~iwd~~~~~~~~~~~~h~~~i~~~~~~~-~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s 162 (312)
++||+.+.+.+..+.+|.+.|++++|+| ++.+|++|+.|+.|++||++.. .....+..+ ..+..+.|++.++..+++
T Consensus 558 ~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~-~~~~~~~~~-~~v~~v~~~~~~g~~lat 635 (793)
T PLN00181 558 QVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQG-VSIGTIKTK-ANICCVQFPSESGRSLAF 635 (793)
T ss_pred EEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCC-cEEEEEecC-CCeEEEEEeCCCCCEEEE
Confidence 9999999888899999999999999997 6789999999999999999765 344455544 567888897777889999
Q ss_pred EeCCCeEEEEEcCCCc-ceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCC------CeEEEEecccccCeE
Q 047355 163 ASLDGTIQIWNMDSSA-AKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYET------KTCVQILEGHTNNVT 235 (312)
Q Consensus 163 ~s~dg~v~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~------~~~~~~~~~h~~~i~ 235 (312)
|+.||.|++||+++.. ....+.+|...|.++.|. ++.++++++.|+.|++||+.. .+++..+.+|...++
T Consensus 636 gs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~---~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~ 712 (793)
T PLN00181 636 GSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV---DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKN 712 (793)
T ss_pred EeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe---CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCee
Confidence 9999999999998765 456778999999998873 567899999999999999874 356788999999999
Q ss_pred EEEEeCCCcEEEEEeCCCcEEEEeCCCcceeee-------------cccCccceEEEEEecCCCeEEEEecCCeEEEE
Q 047355 236 AVCFHPELRIIITASEDGTILIWNATTFRLQNT-------------LSSGLERVWSIGYKKGSNQVAFGCDNGTLIVK 300 (312)
Q Consensus 236 ~l~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~-------------~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~v~ 300 (312)
.++|+|++++|++|+.|+.|++|+......... ...+...|.+++|+|+++.|++|+.+|.|+||
T Consensus 713 ~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~ 790 (793)
T PLN00181 713 FVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKIL 790 (793)
T ss_pred EEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEE
Confidence 999999999999999999999999765432211 12234569999999999999999999999987
No 24
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=9.9e-39 Score=248.60 Aligned_cols=239 Identities=26% Similarity=0.437 Sum_probs=216.9
Q ss_pred ccCcEEEEEEcCCCCeEEEEecCCeEEEEeccCC------ceeeeEEecCCceeEEEEeeCCcEEEEecCCCeEEEEEcc
Q 047355 16 KSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQ------TTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYN 89 (312)
Q Consensus 16 ~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~ 89 (312)
++.-|.+.||+|.|+++|+|+-|....||++... +..+.+..|.+.+.++.|.. +..|++++.|.+..+||++
T Consensus 96 ~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie 174 (343)
T KOG0286|consen 96 PSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIE 174 (343)
T ss_pred CceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcc
Confidence 4568999999999999999999999999998754 33456778899999999998 5679999999999999999
Q ss_pred CceeeeeecccccceeEEEEec-CCCEEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeCCCe
Q 047355 90 TMASVKEFEAHEDYIRSLAVHP-TFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGT 168 (312)
Q Consensus 90 ~~~~~~~~~~h~~~i~~~~~~~-~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~ 168 (312)
+++..+.|.+|.+.|.+++++| +++.+++|+.|+..++||++.. .+.+.|.+|...|..+.|.|. +..|++|+.|++
T Consensus 175 ~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~-~c~qtF~ghesDINsv~ffP~-G~afatGSDD~t 252 (343)
T KOG0286|consen 175 TGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG-QCVQTFEGHESDINSVRFFPS-GDAFATGSDDAT 252 (343)
T ss_pred cceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCc-ceeEeecccccccceEEEccC-CCeeeecCCCce
Confidence 9999999999999999999999 8899999999999999999876 788999999999999999995 589999999999
Q ss_pred EEEEEcCCCcceeeeccc--ccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEecccccCeEEEEEeCCCcEE
Q 047355 169 IQIWNMDSSAAKFTLDAH--EKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRII 246 (312)
Q Consensus 169 v~iwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~i~~l~~~~~~~~l 246 (312)
+|+||++..+.+..+... ..++++++| +..|++|++|..|.++.+||.-.++....+.+|+..|.++..+|||..+
T Consensus 253 cRlyDlRaD~~~a~ys~~~~~~gitSv~F--S~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av 330 (343)
T KOG0286|consen 253 CRLYDLRADQELAVYSHDSIICGITSVAF--SKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAV 330 (343)
T ss_pred eEEEeecCCcEEeeeccCcccCCceeEEE--cccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEE
Confidence 999999998877666532 356888876 5568999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCcEEEEe
Q 047355 247 ITASEDGTILIWN 259 (312)
Q Consensus 247 ~s~s~dg~v~iwd 259 (312)
+|||.|..+|||.
T Consensus 331 ~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 331 ATGSWDSTLRIWA 343 (343)
T ss_pred EecchhHheeecC
Confidence 9999999999994
No 25
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=8.5e-38 Score=238.34 Aligned_cols=264 Identities=19% Similarity=0.345 Sum_probs=222.5
Q ss_pred hhcccCcEEEEEEcCCCCeEEEEecCCeEEEEeccCCc--eeeeEEecCCceeEEEEeeCCcEEEEecCCCeEEEEEccC
Q 047355 13 FIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQT--TEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNT 90 (312)
Q Consensus 13 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~ 90 (312)
+...+..|+++.+.|+++.|++++. ..||+||+.+.. ++.++..+...|.++.|..+++++++|++||+++|||++.
T Consensus 36 iqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~ 114 (311)
T KOG0315|consen 36 IQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRS 114 (311)
T ss_pred EecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccC
Confidence 4344568999999999998887765 789999997654 5788999989999999999999999999999999999998
Q ss_pred ceeeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeCCCeEE
Q 047355 91 MASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQ 170 (312)
Q Consensus 91 ~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~ 170 (312)
..+.+.+ .|..+|+++..+|....|++|..+|.|++||+....-.-........++.++...| ++..++++..-|.++
T Consensus 115 ~~~qR~~-~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~-dgsml~a~nnkG~cy 192 (311)
T KOG0315|consen 115 LSCQRNY-QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMP-DGSMLAAANNKGNCY 192 (311)
T ss_pred cccchhc-cCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcC-CCcEEEEecCCccEE
Confidence 6665555 56699999999999999999999999999999765222222333446778888887 568899999999999
Q ss_pred EEEcCCC------cceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCC-eEEEEecccccCeEEEEEeCCC
Q 047355 171 IWNMDSS------AAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETK-TCVQILEGHTNNVTAVCFHPEL 243 (312)
Q Consensus 171 iwd~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~-~~~~~~~~h~~~i~~l~~~~~~ 243 (312)
+|++.+. .++..+++|+..+..+ ..+||+++||++|.|.++++|+.++. +....+.+|...++..+||.|+
T Consensus 193 vW~l~~~~~~s~l~P~~k~~ah~~~il~C--~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg 270 (311)
T KOG0315|consen 193 VWRLLNHQTASELEPVHKFQAHNGHILRC--LLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADG 270 (311)
T ss_pred EEEccCCCccccceEhhheecccceEEEE--EECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCc
Confidence 9998753 3445677887765544 46899999999999999999999887 7778899999999999999999
Q ss_pred cEEEEEeCCCcEEEEeCCCcceeeecccCccceEEEEE
Q 047355 244 RIIITASEDGTILIWNATTFRLQNTLSSGLERVWSIGY 281 (312)
Q Consensus 244 ~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~ 281 (312)
++|+||+.|+.+++|+++.++.+....+|.....|++.
T Consensus 271 ~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~l 308 (311)
T KOG0315|consen 271 EYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVAL 308 (311)
T ss_pred cEEEecCCCCceeecccccCceeeecCCcccccEEEEe
Confidence 99999999999999999999988888888777667654
No 26
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.9e-37 Score=258.48 Aligned_cols=292 Identities=22% Similarity=0.327 Sum_probs=241.6
Q ss_pred hhhhcccCcEEEEEEcCCCC-eEEEEecCCeEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEecCCCeEEEEEcc
Q 047355 11 KEFIQKSDRVKSVDFHPTQP-WVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYN 89 (312)
Q Consensus 11 ~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~ 89 (312)
.++.+|+.+|++++|-|..+ ++++|++|++|.+|+-...+-..+++.|..-|.++.|+|||.++++++.||++.+||-.
T Consensus 141 Gei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGk 220 (603)
T KOG0318|consen 141 GEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGK 220 (603)
T ss_pred ceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCC
Confidence 45779999999999999998 58899999999999988888778888899999999999999999999999999999999
Q ss_pred Cceeeeeec---ccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCce-------------------------------
Q 047355 90 TMASVKEFE---AHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWE------------------------------- 135 (312)
Q Consensus 90 ~~~~~~~~~---~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~------------------------------- 135 (312)
+++.+.+++ +|.+.|.+++|+|+++.++|+|.|.++||||+..+..
T Consensus 221 tge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G 300 (603)
T KOG0318|consen 221 TGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSG 300 (603)
T ss_pred CccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCc
Confidence 999999987 8999999999999999999999999999999754310
Q ss_pred -----------eeeEecCCccceEEEEeCCCCCCEEEEEeCCCeEEEEEcCCCcce-----------eeecccc------
Q 047355 136 -----------CTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAK-----------FTLDAHE------ 187 (312)
Q Consensus 136 -----------~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~-----------~~~~~~~------ 187 (312)
+.+.+.+|...+..+..+|.+ ..+++|+.||.|.-||..++..- ..+..++
T Consensus 301 ~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~-~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t 379 (603)
T KOG0318|consen 301 TINYLNPSDPSVLKVISGHNKSITALTVSPDG-KTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFT 379 (603)
T ss_pred EEEEecccCCChhheecccccceeEEEEcCCC-CEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEE
Confidence 112346888999999999854 89999999999999998543211 0000000
Q ss_pred ---------------------------cc-------------eeE----------------------EEEEEcCCceEEE
Q 047355 188 ---------------------------KG-------------INC----------------------IDYFITSDKVYLI 205 (312)
Q Consensus 188 ---------------------------~~-------------v~~----------------------~~~~~~~~~~~l~ 205 (312)
++ +.| .+...++++..++
T Consensus 380 ~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~va 459 (603)
T KOG0318|consen 380 IGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVA 459 (603)
T ss_pred EecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEE
Confidence 00 000 0123567888999
Q ss_pred EEeCCCeEEEEeCCCCe--EEEEecccccCeEEEEEeCCCcEEEEEeCCCcEEEEeCCCcceeeecc-cCccceEEEEEe
Q 047355 206 TGSDDFTVKVWDYETKT--CVQILEGHTNNVTAVCFHPELRIIITASEDGTILIWNATTFRLQNTLS-SGLERVWSIGYK 282 (312)
Q Consensus 206 sg~~dg~i~vwd~~~~~--~~~~~~~h~~~i~~l~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~ 282 (312)
.|++|++|++|.+.... ....+..|.++|++++|+||+.+||+|...+.+.+||.++.+.....- -|..++.+++|+
T Consensus 460 VGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWs 539 (603)
T KOG0318|consen 460 VGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWS 539 (603)
T ss_pred EecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeC
Confidence 99999999999987644 233456799999999999999999999999999999999887744433 488999999999
Q ss_pred cCCCeEEEEecCCeEEEEecc
Q 047355 283 KGSNQVAFGCDNGTLIVKIGN 303 (312)
Q Consensus 283 ~~~~~l~~~~~~g~i~v~~~~ 303 (312)
|+.+++|+|+-|-.|+||--+
T Consensus 540 P~n~~vATGSlDt~Viiysv~ 560 (603)
T KOG0318|consen 540 PNNKLVATGSLDTNVIIYSVK 560 (603)
T ss_pred CCceEEEeccccceEEEEEcc
Confidence 999999999999999987543
No 27
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.5e-38 Score=238.73 Aligned_cols=280 Identities=19% Similarity=0.269 Sum_probs=246.3
Q ss_pred hhhhcccCcEEEEEEcCCCCeEEEEecCCeEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEecCCCeEEEEEccC
Q 047355 11 KEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNT 90 (312)
Q Consensus 11 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~ 90 (312)
+.+..+.++|.++.|+-||++.++++.|.+|++|+...+.+++++..|...|..++.+.|...+++|+.|+.+.+||+++
T Consensus 11 ~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~T 90 (307)
T KOG0316|consen 11 SILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNT 90 (307)
T ss_pred eeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEccc
Confidence 44667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCC-CceeeeEecCCccceEEEEeCCCCCCEEEEEeCCCeE
Q 047355 91 MASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEK-NWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTI 169 (312)
Q Consensus 91 ~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v 169 (312)
++....+.+|...|+.+.|+.+...+++|+.|.++++||-+. ..++++.+......|.++.... ..+++||.||++
T Consensus 91 Gkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~---heIvaGS~DGtv 167 (307)
T KOG0316|consen 91 GKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAE---HEIVAGSVDGTV 167 (307)
T ss_pred CeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecc---cEEEeeccCCcE
Confidence 999999999999999999999999999999999999999764 4567777777777888877653 679999999999
Q ss_pred EEEEcCCCcceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEecccccC--eEEEEEeCCCcEEE
Q 047355 170 QIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNN--VTAVCFHPELRIII 247 (312)
Q Consensus 170 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~--i~~l~~~~~~~~l~ 247 (312)
|.||++.+....-..+ .+|+|+.+ ++++...+.++.|+++++.|-+++++++.+++|... -...+++.....++
T Consensus 168 RtydiR~G~l~sDy~g--~pit~vs~--s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~ 243 (307)
T KOG0316|consen 168 RTYDIRKGTLSSDYFG--HPITSVSF--SKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVF 243 (307)
T ss_pred EEEEeecceeehhhcC--CcceeEEe--cCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEE
Confidence 9999998765433333 57888874 788899999999999999999999999999999764 33456777778899
Q ss_pred EEeCCCcEEEEeCCCcceeeecccCccc-eEEEEEecCCCeEEEEecCCeE
Q 047355 248 TASEDGTILIWNATTFRLQNTLSSGLER-VWSIGYKKGSNQVAFGCDNGTL 297 (312)
Q Consensus 248 s~s~dg~v~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~~g~i 297 (312)
+||+||.|++||+.....+..+..+... +..+.+.|.-..++++...+.+
T Consensus 244 sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~~~~ 294 (307)
T KOG0316|consen 244 SGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGHGDL 294 (307)
T ss_pred eccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecCCcee
Confidence 9999999999999998888888877766 8999999998888887776654
No 28
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=9.6e-38 Score=241.61 Aligned_cols=252 Identities=21% Similarity=0.365 Sum_probs=220.8
Q ss_pred eeeeEEecCCceeEEEEeeC-CcEEEEecCCCeEEEEEccC-----ceeeeeecccccceeEEEEecCCCEEEEEeCCCc
Q 047355 51 TEKSVKVTDSPVRTAKFVAR-EHWIVCGSDDKFIRVFDYNT-----MASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKL 124 (312)
Q Consensus 51 ~~~~~~~~~~~v~~~~~~~~-~~~l~~g~~dg~i~iwd~~~-----~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~ 124 (312)
....+..|.+.|..++-.+. .+.+++++.|.++.+|++.. +...+.+++|+..|..+..++++++.+++++|++
T Consensus 7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~ 86 (315)
T KOG0279|consen 7 LRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGT 86 (315)
T ss_pred eeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccce
Confidence 34567788888999888775 66788999999999998754 4567889999999999999999999999999999
Q ss_pred EEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeCCCeEEEEEcCCCcceeeecc--cccceeEEEEEEcCCce
Q 047355 125 IKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDA--HEKGINCIDYFITSDKV 202 (312)
Q Consensus 125 v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~ 202 (312)
+++||+... +..+.|.+|...|.+++|+|+ ...+++||.|.+|++|+...... .++.. +...|.|+.|.|.+++.
T Consensus 87 lrlWDl~~g-~~t~~f~GH~~dVlsva~s~d-n~qivSGSrDkTiklwnt~g~ck-~t~~~~~~~~WVscvrfsP~~~~p 163 (315)
T KOG0279|consen 87 LRLWDLATG-ESTRRFVGHTKDVLSVAFSTD-NRQIVSGSRDKTIKLWNTLGVCK-YTIHEDSHREWVSCVRFSPNESNP 163 (315)
T ss_pred EEEEEecCC-cEEEEEEecCCceEEEEecCC-CceeecCCCcceeeeeeecccEE-EEEecCCCcCcEEEEEEcCCCCCc
Confidence 999999887 778889999999999999985 47899999999999999976543 33333 37889999998877789
Q ss_pred EEEEEeCCCeEEEEeCCCCeEEEEecccccCeEEEEEeCCCcEEEEEeCCCcEEEEeCCCcceeeecccCccceEEEEEe
Q 047355 203 YLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITASEDGTILIWNATTFRLQNTLSSGLERVWSIGYK 282 (312)
Q Consensus 203 ~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~ 282 (312)
+|++++.|++|++||+++.+....+.+|.+.++.++++|||.+.++|+.||.+.+||++.++....+. +...|.+++|+
T Consensus 164 ~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fs 242 (315)
T KOG0279|consen 164 IIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFS 242 (315)
T ss_pred EEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc-CCCeEeeEEec
Confidence 99999999999999999999999999999999999999999999999999999999999988877664 55789999999
Q ss_pred cCCCeEEEEecCCeEEEEeccCCCC
Q 047355 283 KGSNQVAFGCDNGTLIVKIGNSSGC 307 (312)
Q Consensus 283 ~~~~~l~~~~~~g~i~v~~~~~~~~ 307 (312)
|+.=.|+.+.+.+ |+||-.+++.|
T Consensus 243 pnrywL~~at~~s-IkIwdl~~~~~ 266 (315)
T KOG0279|consen 243 PNRYWLCAATATS-IKIWDLESKAV 266 (315)
T ss_pred CCceeEeeccCCc-eEEEeccchhh
Confidence 9988888777666 88888777655
No 29
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.7e-37 Score=248.23 Aligned_cols=285 Identities=20% Similarity=0.290 Sum_probs=245.4
Q ss_pred hhhhcccCcEEEEEEcCCCCeEEEEecCCeEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEecCCCeEEEEEccC
Q 047355 11 KEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNT 90 (312)
Q Consensus 11 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~ 90 (312)
..|..|.+.|++++.+|+.+++++|+.|..-.+|+..++.....+..|...|.++.|+.++.+|++|+.+|.|++|...+
T Consensus 58 ~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~st 137 (399)
T KOG0296|consen 58 VTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVST 137 (399)
T ss_pred eehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEccc
Confidence 45889999999999999999999999999999999999988888999999999999999999999999999999999998
Q ss_pred ceeeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeCCCeEE
Q 047355 91 MASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQ 170 (312)
Q Consensus 91 ~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~ 170 (312)
+....++..--..|.=+.|||.+.+|+.|+.||.+-+|.+... ...+.+.+|..++..-.|.|. +..++++..||+|+
T Consensus 138 g~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~-~~~kv~~Gh~~~ct~G~f~pd-GKr~~tgy~dgti~ 215 (399)
T KOG0296|consen 138 GGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQ-ALCKVMSGHNSPCTCGEFIPD-GKRILTGYDDGTII 215 (399)
T ss_pred CceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCc-ceeeEecCCCCCcccccccCC-CceEEEEecCceEE
Confidence 8766666555567888999999999999999999999998765 556788999999999999985 68999999999999
Q ss_pred EEEcCCCcceeeecc------ccc---------------ce------------------------------eEEEEE-Ec
Q 047355 171 IWNMDSSAAKFTLDA------HEK---------------GI------------------------------NCIDYF-IT 198 (312)
Q Consensus 171 iwd~~~~~~~~~~~~------~~~---------------~v------------------------------~~~~~~-~~ 198 (312)
+||+.++++...+.. +.. .. .|+.+. .+
T Consensus 216 ~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~s 295 (399)
T KOG0296|consen 216 VWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSS 295 (399)
T ss_pred EEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccc
Confidence 999999887765541 100 00 000000 01
Q ss_pred CCceEEEEEeCCCeEEEEeCCCCeEEEEecccccCeEEEEEeCCCcEEEEEeCCCcEEEEeCCCcceeeecccCccceEE
Q 047355 199 SDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITASEDGTILIWNATTFRLQNTLSSGLERVWS 278 (312)
Q Consensus 199 ~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~ 278 (312)
..-.+.|+|+-||+|.+||....++.+... |...|+.+.|.+ ..+|++++.+|.|+.||.++++++.+..+|...|.+
T Consensus 296 s~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~ 373 (399)
T KOG0296|consen 296 SKLPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILD 373 (399)
T ss_pred cccchhhcccccceEEEEecccchhheecc-CCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeE
Confidence 112357889999999999998887777665 899999999999 788999999999999999999999999999999999
Q ss_pred EEEecCCCeEEEEecCCeEEE
Q 047355 279 IGYKKGSNQVAFGCDNGTLIV 299 (312)
Q Consensus 279 ~~~~~~~~~l~~~~~~g~i~v 299 (312)
++++|+.++++++++|++.+|
T Consensus 374 f~ls~~~~~vvT~s~D~~a~V 394 (399)
T KOG0296|consen 374 FALSPQKRLVVTVSDDNTALV 394 (399)
T ss_pred EEEcCCCcEEEEecCCCeEEE
Confidence 999999999999999999765
No 30
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.9e-39 Score=256.51 Aligned_cols=253 Identities=26% Similarity=0.402 Sum_probs=235.7
Q ss_pred eeEEecCCceeEEEEeeCCcEEEEecCCCeEEEEEccCceeeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 047355 53 KSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEK 132 (312)
Q Consensus 53 ~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~ 132 (312)
..+.++..+|..+.|+|+...++++++|++|++||..+++....+++|++.+.+++|+..|+++++++.|-.+++||...
T Consensus 102 ~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~ 181 (406)
T KOG0295|consen 102 QKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDT 181 (406)
T ss_pred hhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHH
Confidence 34456778899999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CceeeeEecCCccceEEEEeCCCCCCEEEEEeCCCeEEEEEcCCCcceeeecccccceeEEEEEEcCCceEEEEEeCCCe
Q 047355 133 NWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFT 212 (312)
Q Consensus 133 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~ 212 (312)
..++.+...+|...|..+.|-|.+ .++++++.|.+|+.|++.++.++.++.+|...+..++ +..||.++++++.|.+
T Consensus 182 ~~~c~ks~~gh~h~vS~V~f~P~g-d~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~--v~~DGti~As~s~dqt 258 (406)
T KOG0295|consen 182 FFRCIKSLIGHEHGVSSVFFLPLG-DHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVR--VNQDGTIIASCSNDQT 258 (406)
T ss_pred HHHHHHHhcCcccceeeEEEEecC-CeeeecccccceeEEecccceeEEeccCchHhEEEEE--ecCCeeEEEecCCCce
Confidence 677788889999999999999975 8999999999999999999999999999999998876 5789999999999999
Q ss_pred EEEEeCCCCeEEEEecccccCeEEEEEeCC---------------CcEEEEEeCCCcEEEEeCCCcceeeecccCccceE
Q 047355 213 VKVWDYETKTCVQILEGHTNNVTAVCFHPE---------------LRIIITASEDGTILIWNATTFRLQNTLSSGLERVW 277 (312)
Q Consensus 213 i~vwd~~~~~~~~~~~~h~~~i~~l~~~~~---------------~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~ 277 (312)
|++|-..++++...++.|+-+|-+++|-|. ++++.+++.|++|++||++++..+.++.+|.+-|.
T Consensus 259 l~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr 338 (406)
T KOG0295|consen 259 LRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVR 338 (406)
T ss_pred EEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceee
Confidence 999999999999999999999999999664 25899999999999999999999999999999999
Q ss_pred EEEEecCCCeEEEEecCCeEEEEeccCCCCc
Q 047355 278 SIGYKKGSNQVAFGCDNGTLIVKIGNSSGCD 308 (312)
Q Consensus 278 ~~~~~~~~~~l~~~~~~g~i~v~~~~~~~~~ 308 (312)
.++|+|.|++|+++.+|++++||=.+-..|-
T Consensus 339 ~~af~p~Gkyi~ScaDDktlrvwdl~~~~cm 369 (406)
T KOG0295|consen 339 GVAFSPGGKYILSCADDKTLRVWDLKNLQCM 369 (406)
T ss_pred eeEEcCCCeEEEEEecCCcEEEEEeccceee
Confidence 9999999999999999999999988877774
No 31
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=4.3e-37 Score=247.12 Aligned_cols=281 Identities=25% Similarity=0.452 Sum_probs=236.4
Q ss_pred cccCcEEEEEEcCCCCeEEEEecCCeEEEEeccCCceeeeEEecCCceeEEEEeeCCc---EEEEecCCCeEEEEEccCc
Q 047355 15 QKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREH---WIVCGSDDKFIRVFDYNTM 91 (312)
Q Consensus 15 ~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~~g~~dg~i~iwd~~~~ 91 (312)
.|.|-|.++... ++++++|++||.+++||.. ++......+|.+++..+.+..... .+++|+.|.++++|.++.+
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~-Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~ 179 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLK-GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG 179 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEecC-CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence 466777777776 7899999999999999975 567788899999999888875433 5999999999999988765
Q ss_pred e----eeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCC------------------------ceeeeEecCC
Q 047355 92 A----SVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKN------------------------WECTQTFEGH 143 (312)
Q Consensus 92 ~----~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~------------------------~~~~~~~~~~ 143 (312)
+ .++..++|+..|.+++..+++..+++||.|.++++|+.... ..+...+.+|
T Consensus 180 ~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GH 259 (423)
T KOG0313|consen 180 ENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGH 259 (423)
T ss_pred hhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEeccc
Confidence 4 33445699999999999999999999999999999993211 0133467899
Q ss_pred ccceEEEEeCCCCCCEEEEEeCCCeEEEEEcCCCcceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCC--
Q 047355 144 SHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETK-- 221 (312)
Q Consensus 144 ~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~-- 221 (312)
..+|.++.|.+ ...++++|.|.+|+.||+.++.....+.+ ....+|+++ .+...+|++|+.|..|++||.+++
T Consensus 260 t~~Vs~V~w~d--~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~--~~~~~Ll~~gssdr~irl~DPR~~~g 334 (423)
T KOG0313|consen 260 TEPVSSVVWSD--ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISY--SPLSKLLASGSSDRHIRLWDPRTGDG 334 (423)
T ss_pred ccceeeEEEcC--CCceEeecccceEEEEEeecccceeeeec-CcceeEeec--ccccceeeecCCCCceeecCCCCCCC
Confidence 99999999987 47899999999999999999887766654 356788875 457789999999999999999864
Q ss_pred -eEEEEecccccCeEEEEEeCC-CcEEEEEeCCCcEEEEeCCCcc-eeeecccCccceEEEEEecCCCeEEEEecCCeEE
Q 047355 222 -TCVQILEGHTNNVTAVCFHPE-LRIIITASEDGTILIWNATTFR-LQNTLSSGLERVWSIGYKKGSNQVAFGCDNGTLI 298 (312)
Q Consensus 222 -~~~~~~~~h~~~i~~l~~~~~-~~~l~s~s~dg~v~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~ 298 (312)
...+.+.+|...|.++.|+|. ..+|++|+.|+++++||+++-+ .+..+.+|..+|.++.|+ ++..|++|+.|.+++
T Consensus 335 s~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~ 413 (423)
T KOG0313|consen 335 SVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLR 413 (423)
T ss_pred ceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEE
Confidence 346788999999999999995 4578999999999999999876 888999999999999996 457999999999999
Q ss_pred EEeccC
Q 047355 299 VKIGNS 304 (312)
Q Consensus 299 v~~~~~ 304 (312)
|--+.+
T Consensus 414 i~~~~~ 419 (423)
T KOG0313|consen 414 IFKGSP 419 (423)
T ss_pred Eecccc
Confidence 865543
No 32
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1e-37 Score=271.43 Aligned_cols=225 Identities=21% Similarity=0.425 Sum_probs=209.9
Q ss_pred EEecCCeEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEecCCCeEEEEEccCceeeeeecccccceeEEEEecCC
Q 047355 34 ASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTF 113 (312)
Q Consensus 34 ~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~ 113 (312)
+.+.|-.+.+.|-++....+.+.+|.+||..+.|+|+.++|+++++|+++|+|.+.+..++-.+++|..||..+.|+|-|
T Consensus 426 ~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~G 505 (707)
T KOG0263|consen 426 TESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRG 505 (707)
T ss_pred ccccchhhhhccccCCceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCc
Confidence 45556667788877777778899999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeCCCeEEEEEcCCCcceeeecccccceeEE
Q 047355 114 PFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCI 193 (312)
Q Consensus 114 ~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~ 193 (312)
-+++|+|.|++.++|..... .+.+.+.+|-+.+-++.|+|+ .+++++||.|.+||+||..++..+..+.+|..+|.++
T Consensus 506 yYFatas~D~tArLWs~d~~-~PlRifaghlsDV~cv~FHPN-s~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al 583 (707)
T KOG0263|consen 506 YYFATASHDQTARLWSTDHN-KPLRIFAGHLSDVDCVSFHPN-SNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTAL 583 (707)
T ss_pred eEEEecCCCceeeeeecccC-CchhhhcccccccceEEECCc-ccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEE
Confidence 99999999999999997664 667889999999999999994 6899999999999999999999999999999999999
Q ss_pred EEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEecccccCeEEEEEeCCCcEEEEEeCCCcEEEEeCCC
Q 047355 194 DYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITASEDGTILIWNATT 262 (312)
Q Consensus 194 ~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~s~dg~v~iwd~~~ 262 (312)
++ +|+|++|++|+.||.|++||+.+++.+..+.+|.+.|+++.|+.+|..||+|+.|..|++||+..
T Consensus 584 ~~--Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 584 AF--SPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred EE--cCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 85 67999999999999999999999999999999999999999999999999999999999999854
No 33
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.1e-38 Score=258.43 Aligned_cols=250 Identities=21% Similarity=0.414 Sum_probs=221.2
Q ss_pred hhhhhhhcccCcEEEEEEcCCCCeEEEEecCCeEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEecCCCeEEEEE
Q 047355 8 QIEKEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFD 87 (312)
Q Consensus 8 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd 87 (312)
.++.-+..|++.|.++.|++++.++++|..+|.|++|+..-.........+...|+.++|+|++..+++++.||+|+|||
T Consensus 129 nFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWd 208 (464)
T KOG0284|consen 129 NFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWD 208 (464)
T ss_pred eHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEe
Confidence 34455668999999999999999999999999999999764433333344558899999999999999999999999999
Q ss_pred ccCceeeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeCCC
Q 047355 88 YNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDG 167 (312)
Q Consensus 88 ~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg 167 (312)
....+....+.+|.-.|++++|||...+|++||.|..|++||.+.. .++.++.+|.+.|..+.|+|.. ++|+++|.|.
T Consensus 209 f~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg-~cl~tlh~HKntVl~~~f~~n~-N~Llt~skD~ 286 (464)
T KOG0284|consen 209 FRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSG-SCLATLHGHKNTVLAVKFNPNG-NWLLTGSKDQ 286 (464)
T ss_pred ccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCc-chhhhhhhccceEEEEEEcCCC-CeeEEccCCc
Confidence 9888777888999999999999999999999999999999998876 6777888999999999999965 9999999999
Q ss_pred eEEEEEcCCCcceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEE-ecccccCeEEEEEeCCCcEE
Q 047355 168 TIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQI-LEGHTNNVTAVCFHPELRII 246 (312)
Q Consensus 168 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~-~~~h~~~i~~l~~~~~~~~l 246 (312)
.++++|+++.+.++++.+|+..+.++.|.+. ...+|.+|+.||.|..|.+...+++.. -.+|...|++++|+|-|.+|
T Consensus 287 ~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~-~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil 365 (464)
T KOG0284|consen 287 SCKVFDIRTMKELFTYRGHKKDVTSLTWHPL-NESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHIL 365 (464)
T ss_pred eEEEEehhHhHHHHHhhcchhhheeeccccc-cccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeE
Confidence 9999999999999999999999999998765 456799999999999999874444433 35799999999999999999
Q ss_pred EEEeCCCcEEEEeC
Q 047355 247 ITASEDGTILIWNA 260 (312)
Q Consensus 247 ~s~s~dg~v~iwd~ 260 (312)
++|+.|.++++|.-
T Consensus 366 ~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 366 ATGSNDRTVRFWTR 379 (464)
T ss_pred eecCCCcceeeecc
Confidence 99999999999963
No 34
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.4e-37 Score=265.36 Aligned_cols=284 Identities=22% Similarity=0.383 Sum_probs=253.5
Q ss_pred hhhcccCcEEEEEEcCCCCeEEEEecCCeEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEecCCCeEEEEEccCc
Q 047355 12 EFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTM 91 (312)
Q Consensus 12 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~ 91 (312)
++.+|...|.+++|+.+...+++| ..+.++||+.++.++++++... .+.+..|.|.+.+++.|...|.+.+||+.+.
T Consensus 368 ~~~GHR~dVRsl~vS~d~~~~~Sg-a~~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~ 444 (888)
T KOG0306|consen 368 EIGGHRSDVRSLCVSSDSILLASG-AGESIKIWNRDTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDLASA 444 (888)
T ss_pred eeccchhheeEEEeecCceeeeec-CCCcEEEEEccCcceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEEeehh
Confidence 467899999999999887665554 5689999999998888887544 6888999999999999999999999999999
Q ss_pred eeeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCce----eee-------EecCCccceEEEEeCCCCCCEE
Q 047355 92 ASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWE----CTQ-------TFEGHSHYVMQSAFNPKDLNTF 160 (312)
Q Consensus 92 ~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~----~~~-------~~~~~~~~v~~~~~~~~~~~~~ 160 (312)
..+...++|.+.|.+++..|+++.++|||.|.+|++||..-... ..+ ....-...+.++.++| ++.++
T Consensus 445 ~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Sp-dgk~L 523 (888)
T KOG0306|consen 445 SLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSP-DGKLL 523 (888)
T ss_pred hhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcC-CCcEE
Confidence 88889999999999999999999999999999999999631111 000 1112345788999999 56899
Q ss_pred EEEeCCCeEEEEEcCCCcceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEecccccCeEEEEEe
Q 047355 161 ASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFH 240 (312)
Q Consensus 161 ~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~i~~l~~~ 240 (312)
+++-.|.+|++|=+++.+-...+-+|.-+|.|+++ ++|+..+++||.|.+|++|-+.=|.|.+.+.+|.+.|.++.|-
T Consensus 524 aVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDI--S~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~ 601 (888)
T KOG0306|consen 524 AVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDI--SPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFL 601 (888)
T ss_pred EEEeccCeEEEEEecceeeeeeecccccceeEEec--cCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEc
Confidence 99999999999999999999999999999999984 7889999999999999999998899999999999999999999
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCcceeeecccCccceEEEEEecCCCeEEEEecCCeEEEEe
Q 047355 241 PELRIIITASEDGTILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGCDNGTLIVKI 301 (312)
Q Consensus 241 ~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~v~~ 301 (312)
|+...++++|.|+.|+-||-..++.++++.+|...||+++.+|+|.++++++.|..|++|=
T Consensus 602 P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE 662 (888)
T KOG0306|consen 602 PKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWE 662 (888)
T ss_pred ccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeee
Confidence 9999999999999999999999999999999999999999999999999999999999884
No 35
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.8e-37 Score=234.46 Aligned_cols=280 Identities=28% Similarity=0.394 Sum_probs=232.9
Q ss_pred EEEEEcCC-CCeEEEEe-------cCCeEEEEeccCCceeeeEE--ecCCceeEEEEeeC-CcEEEEecCCCeEEEEEcc
Q 047355 21 KSVDFHPT-QPWVLASL-------YSGTVCIWNYHSQTTEKSVK--VTDSPVRTAKFVAR-EHWIVCGSDDKFIRVFDYN 89 (312)
Q Consensus 21 ~~~~~~~~-~~~l~~~~-------~dg~v~iw~~~~~~~~~~~~--~~~~~v~~~~~~~~-~~~l~~g~~dg~i~iwd~~ 89 (312)
+++.|+|- ..+|+.+. ..|++.|.+.....-+..+. .....+..++|++. .+.+++++.||++++||+.
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~ 91 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT 91 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence 68899994 34555442 46899999985433333333 23567889999975 5678899999999999964
Q ss_pred C-ceeeeeecccccceeEEEEecCC-CEEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeCCC
Q 047355 90 T-MASVKEFEAHEDYIRSLAVHPTF-PFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDG 167 (312)
Q Consensus 90 ~-~~~~~~~~~h~~~i~~~~~~~~~-~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg 167 (312)
. ..++..++.|+.+|.++.+++.. ..++++|+|++||+|+.+.. ..++++.+|...|....|+|..+++|+++|.|+
T Consensus 92 ~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~-~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~ 170 (311)
T KOG0277|consen 92 MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRP-NSVQTFNGHNSCIYQAAFSPHIPNLFASASGDG 170 (311)
T ss_pred CCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCC-cceEeecCCccEEEEEecCCCCCCeEEEccCCc
Confidence 3 35788999999999999999865 45678899999999998765 567889999999999999999999999999999
Q ss_pred eEEEEEcCCCcceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCC-eEEEEecccccCeEEEEEeCC-CcE
Q 047355 168 TIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETK-TCVQILEGHTNNVTAVCFHPE-LRI 245 (312)
Q Consensus 168 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~-~~~~~~~~h~~~i~~l~~~~~-~~~ 245 (312)
++++||++.......+++|...+.|.+|.. -+...+++|+.|+.|+.||++.. .++..+.+|.-.|+.+.|+|. ...
T Consensus 171 ~l~lwdvr~~gk~~~i~ah~~Eil~cdw~k-y~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~l 249 (311)
T KOG0277|consen 171 TLRLWDVRSPGKFMSIEAHNSEILCCDWSK-YNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASL 249 (311)
T ss_pred eEEEEEecCCCceeEEEeccceeEeecccc-cCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhH
Confidence 999999998777777999998999999854 46678999999999999999864 567888999999999999995 468
Q ss_pred EEEEeCCCcEEEEeCCCc-ceeeecccCccceEEEEEec-CCCeEEEEecCCeEEEEec
Q 047355 246 IITASEDGTILIWNATTF-RLQNTLSSGLERVWSIGYKK-GSNQVAFGCDNGTLIVKIG 302 (312)
Q Consensus 246 l~s~s~dg~v~iwd~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~g~i~v~~~ 302 (312)
||+++.|-++||||.... .++.+.+-|.+-|-.+.|++ ++.++|+++.|+.++||.+
T Consensus 250 LaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 250 LASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 999999999999998743 35556666778899999987 7889999999999999975
No 36
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.2e-36 Score=250.19 Aligned_cols=280 Identities=20% Similarity=0.392 Sum_probs=243.0
Q ss_pred ccCcEEEEEEcCCCCeEEEEecCCeEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEecCCCeEEEEEccCceeee
Q 047355 16 KSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVK 95 (312)
Q Consensus 16 ~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~ 95 (312)
+.+.|.+++|+|..++=++....-.+.||+..+....+.+.-....+.++.|..||+++++|+..|.|++||.++...+.
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR 104 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILR 104 (487)
T ss_pred ccCcceeEecCCCCCCceEEecccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHH
Confidence 45789999999998876766667789999998877777777777789999999999999999999999999988777788
Q ss_pred eecccccceeEEEEecCC-CEEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeCCCeEEEEEc
Q 047355 96 EFEAHEDYIRSLAVHPTF-PFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNM 174 (312)
Q Consensus 96 ~~~~h~~~i~~~~~~~~~-~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~ 174 (312)
.+.+|+.+|..+.|+|.+ .++++|++|+.+++||+.+... ...+.+|+.+|.+..++|.++..+++||.||+|++||+
T Consensus 105 ~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v-~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~Dt 183 (487)
T KOG0310|consen 105 QLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV-QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDT 183 (487)
T ss_pred HHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE-EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEe
Confidence 899999999999999965 5677999999999999987753 55789999999999999998889999999999999999
Q ss_pred CCCcceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCC-CeEEEEecccccCeEEEEEeCCCcEEEEEeCCC
Q 047355 175 DSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYET-KTCVQILEGHTNNVTAVCFHPELRIIITASEDG 253 (312)
Q Consensus 175 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~-~~~~~~~~~h~~~i~~l~~~~~~~~l~s~s~dg 253 (312)
+.......--.|..+|..+.+ -|.|..+++++.+ .|+|||+.+ ++.+..+..|...|+|+++..+++.|++|+-|+
T Consensus 184 R~~~~~v~elnhg~pVe~vl~--lpsgs~iasAgGn-~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~ 260 (487)
T KOG0310|consen 184 RSLTSRVVELNHGCPVESVLA--LPSGSLIASAGGN-SVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDR 260 (487)
T ss_pred ccCCceeEEecCCCceeeEEE--cCCCCEEEEcCCC-eEEEEEecCCceehhhhhcccceEEEEEeecCCceEeeccccc
Confidence 988544444567888887764 4567788887654 799999985 455555666999999999999999999999999
Q ss_pred cEEEEeCCCcceeeecccCccceEEEEEecCCCeEEEEecCCeEEEE
Q 047355 254 TILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGCDNGTLIVK 300 (312)
Q Consensus 254 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~v~ 300 (312)
.|++||+.++++++.+.-. ++|.+++.+|+++.++.|-.||.+-++
T Consensus 261 ~VKVfd~t~~Kvv~s~~~~-~pvLsiavs~dd~t~viGmsnGlv~~r 306 (487)
T KOG0310|consen 261 HVKVFDTTNYKVVHSWKYP-GPVLSIAVSPDDQTVVIGMSNGLVSIR 306 (487)
T ss_pred ceEEEEccceEEEEeeecc-cceeeEEecCCCceEEEecccceeeee
Confidence 9999999999999887644 789999999999999999999999888
No 37
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.3e-37 Score=257.16 Aligned_cols=287 Identities=19% Similarity=0.346 Sum_probs=247.1
Q ss_pred hhhhhhcccCcEEEEEEcC-CCCeEEEEecCCeEEEEecc-CCceeeeEEecCCceeEEEEeeCCcEEEEecCCCeEEEE
Q 047355 9 IEKEFIQKSDRVKSVDFHP-TQPWVLASLYSGTVCIWNYH-SQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVF 86 (312)
Q Consensus 9 ~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~iw~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iw 86 (312)
+...+.+|.+.|.++.|-| .+..|++++.|+.|+||++- .+++++++.+|..+|..++|++++..+++++.|+.|++|
T Consensus 206 ~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlw 285 (503)
T KOG0282|consen 206 LSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLW 285 (503)
T ss_pred heeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeee
Confidence 3456889999999999999 78889999999999999975 588999999999999999999999999999999999999
Q ss_pred EccCceeeeeecccccceeEEEEecCC-CEEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeC
Q 047355 87 DYNTMASVKEFEAHEDYIRSLAVHPTF-PFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASL 165 (312)
Q Consensus 87 d~~~~~~~~~~~~h~~~i~~~~~~~~~-~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~ 165 (312)
|++++.+...+.. ...++++.++|++ +.+++|+.|+.|+.||++.+ +.++.+..|-..+..+.|.+. +..|++.+.
T Consensus 286 DtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~-kvvqeYd~hLg~i~~i~F~~~-g~rFissSD 362 (503)
T KOG0282|consen 286 DTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSG-KVVQEYDRHLGAILDITFVDE-GRRFISSSD 362 (503)
T ss_pred ccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccch-HHHHHHHhhhhheeeeEEccC-CceEeeecc
Confidence 9999998877743 2457899999998 77889999999999999876 567788889999999999985 589999999
Q ss_pred CCeEEEEEcCCCcceeeec-ccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCC---eEEEEecccc--cCeEEEEE
Q 047355 166 DGTIQIWNMDSSAAKFTLD-AHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETK---TCVQILEGHT--NNVTAVCF 239 (312)
Q Consensus 166 dg~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~---~~~~~~~~h~--~~i~~l~~ 239 (312)
|++++||+.+....+..+. .+.....|+. ..|++.+++.-+.|+.|.+|.+... ...+.+++|. +.-..+.|
T Consensus 363 dks~riWe~~~~v~ik~i~~~~~hsmP~~~--~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~f 440 (503)
T KOG0282|consen 363 DKSVRIWENRIPVPIKNIADPEMHTMPCLT--LHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDF 440 (503)
T ss_pred CccEEEEEcCCCccchhhcchhhccCccee--cCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEE
Confidence 9999999998876554332 2222334444 5788999999999999999987532 2345677886 44667899
Q ss_pred eCCCcEEEEEeCCCcEEEEeCCCcceeeecccCccceEEEEEecC-CCeEEEEecCCeEEEE
Q 047355 240 HPELRIIITASEDGTILIWNATTFRLQNTLSSGLERVWSIGYKKG-SNQVAFGCDNGTLIVK 300 (312)
Q Consensus 240 ~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~g~i~v~ 300 (312)
||||++|++|+.||.+.+||.++.++..++.+|...+..+.|.|. .+.+|+++.+|.|.||
T Consensus 441 SpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiw 502 (503)
T KOG0282|consen 441 SPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIW 502 (503)
T ss_pred cCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEec
Confidence 999999999999999999999999999999999999999999995 5779999999999987
No 38
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.8e-36 Score=260.48 Aligned_cols=288 Identities=23% Similarity=0.370 Sum_probs=256.3
Q ss_pred cEEEEEEcCCCCeEEEEecCCeEEEEeccCCceeeeEEecCCceeEEEEe-eCCcEEEEecCCCeEEEEEccCceeeeee
Q 047355 19 RVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFV-AREHWIVCGSDDKFIRVFDYNTMASVKEF 97 (312)
Q Consensus 19 ~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~g~~dg~i~iwd~~~~~~~~~~ 97 (312)
.+..+..-+....++....|..+.++|.++.+..+.+.+....|..++|. |+.++++.+++.+.+++|+..+..+. .+
T Consensus 283 e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii 361 (775)
T KOG0319|consen 283 EIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-II 361 (775)
T ss_pred hhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EE
Confidence 46677777777778888889999999999998888999988999999987 57789999999999999999887664 88
Q ss_pred cccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCc---eeeeEecCCccceEEEEeCCCCCCEEEEEeCCCeEEEEEc
Q 047355 98 EAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNW---ECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNM 174 (312)
Q Consensus 98 ~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~ 174 (312)
.+|++.|.++....+|-+|+|||.|.++++|.++.+. .+.....+|++.+..++++.....+|+++|.|+++++|++
T Consensus 362 ~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l 441 (775)
T KOG0319|consen 362 PGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDL 441 (775)
T ss_pred eCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecC
Confidence 9999999999977788899999999999999874432 2344567899999999998888889999999999999999
Q ss_pred CCCcc-----e----eeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEecccccCeEEEEEeCCCcE
Q 047355 175 DSSAA-----K----FTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRI 245 (312)
Q Consensus 175 ~~~~~-----~----~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~i~~l~~~~~~~~ 245 (312)
...+. . ....+|.+.|+|+++ .|+..++|+||.|.+.++|++++...+.++.+|...|.++.|+|..+.
T Consensus 442 ~~s~~~~~~~~~~~~~t~~aHdKdIN~Vai--a~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~ 519 (775)
T KOG0319|consen 442 PKSKETAFPIVLTCRYTERAHDKDINCVAI--APNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQL 519 (775)
T ss_pred CCcccccccceehhhHHHHhhcccccceEe--cCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccce
Confidence 76221 1 134579999999985 678899999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCcEEEEeCCCcceeeecccCccceEEEEEecCCCeEEEEecCCeEEEEeccCCCCcc
Q 047355 246 IITASEDGTILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGCDNGTLIVKIGNSSGCDS 309 (312)
Q Consensus 246 l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~v~~~~~~~~~~ 309 (312)
+||+|.|++|+||.++++...+++++|...|..+.|-.+|++|++++.||.+.+|.=++..|--
T Consensus 520 laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~ 583 (775)
T KOG0319|consen 520 LATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEM 583 (775)
T ss_pred eEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999998853
No 39
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.1e-36 Score=244.63 Aligned_cols=288 Identities=20% Similarity=0.301 Sum_probs=241.4
Q ss_pred hhhhcccCcEEEEEEcCCCCeEEEEecCCeEEEEeccCC---ceeeeEEecCCceeEEEEeeCCcEEEEecCCCeEEEEE
Q 047355 11 KEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQ---TTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFD 87 (312)
Q Consensus 11 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd 87 (312)
+.+..|.+.|+-+.|+++|++||+++.|.+..+|+.... +..+++.+|..+|..+.|+||++++++++.|..+.+||
T Consensus 218 qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwD 297 (519)
T KOG0293|consen 218 QILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWD 297 (519)
T ss_pred hhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeecc
Confidence 457789999999999999999999999999999987543 34667888999999999999999999999999999999
Q ss_pred ccCceeeeeec-ccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEecCC-ccceEEEEeCCCCCCEEEEEeC
Q 047355 88 YNTMASVKEFE-AHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGH-SHYVMQSAFNPKDLNTFASASL 165 (312)
Q Consensus 88 ~~~~~~~~~~~-~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~s~s~ 165 (312)
..++.....++ +|...+.+++|.|++..+++|+.|+++..||...+. ....++. ...+..++..+ ++..+++.+.
T Consensus 298 v~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~--~~~W~gvr~~~v~dlait~-Dgk~vl~v~~ 374 (519)
T KOG0293|consen 298 VDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI--LGNWEGVRDPKVHDLAITY-DGKYVLLVTV 374 (519)
T ss_pred CCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch--hhcccccccceeEEEEEcC-CCcEEEEEec
Confidence 99998877764 356789999999999999999999999999986542 2223322 24577888877 5578888889
Q ss_pred CCeEEEEEcCCCcceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEecccccC--eEEEEEeC-C
Q 047355 166 DGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNN--VTAVCFHP-E 242 (312)
Q Consensus 166 dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~--i~~l~~~~-~ 242 (312)
|..+++|+..+...+..+.. ..+++.+. .+.++.++++--.+.++.+||++..+.+..+.||... |-.-+|-- +
T Consensus 375 d~~i~l~~~e~~~dr~lise-~~~its~~--iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~ 451 (519)
T KOG0293|consen 375 DKKIRLYNREARVDRGLISE-EQPITSFS--ISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGN 451 (519)
T ss_pred ccceeeechhhhhhhccccc-cCceeEEE--EcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCC
Confidence 99999999876554433322 34666654 6889999999999999999999988888889999754 33345643 5
Q ss_pred CcEEEEEeCCCcEEEEeCCCcceeeecccCccceEEEEEec-CCCeEEEEecCCeEEEEeccC
Q 047355 243 LRIIITASEDGTILIWNATTFRLQNTLSSGLERVWSIGYKK-GSNQVAFGCDNGTLIVKIGNS 304 (312)
Q Consensus 243 ~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~g~i~v~~~~~ 304 (312)
..++|+||+|+.|+||+-.+++++.++.+|...|.+|+|+| +..++|++++||+|+||-+..
T Consensus 452 ~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 452 DKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred cceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 58999999999999999999999999999999999999998 667899999999999998764
No 40
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.1e-35 Score=261.19 Aligned_cols=252 Identities=29% Similarity=0.506 Sum_probs=226.0
Q ss_pred hhhhhhcccCcEEEEEEcCCCCeEEEEecCCeEEEEec-cCCceeeeEEecCCceeEEEEeeCCcEEEEecCCCeEEEEE
Q 047355 9 IEKEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNY-HSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFD 87 (312)
Q Consensus 9 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd 87 (312)
..+++.+|...|+.++|+|++.++++++.|++++|||+ +.....+++..|...|.+++|+++++.+++|+.|++|++||
T Consensus 195 ~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd 274 (456)
T KOG0266|consen 195 LLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWD 274 (456)
T ss_pred hhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEe
Confidence 55667889999999999999999999999999999999 55688899999999999999999999999999999999999
Q ss_pred ccCceeeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCce-eeeEecCCccc--eEEEEeCCCCCCEEEEEe
Q 047355 88 YNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWE-CTQTFEGHSHY--VMQSAFNPKDLNTFASAS 164 (312)
Q Consensus 88 ~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~-~~~~~~~~~~~--v~~~~~~~~~~~~~~s~s 164 (312)
++++++...+++|.+.|.+++|++++.++++++.|+.|++||+.+... +...+.++... +..+.|+| ++.++++++
T Consensus 275 ~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp-~~~~ll~~~ 353 (456)
T KOG0266|consen 275 VRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSP-NGKYLLSAS 353 (456)
T ss_pred ccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECC-CCcEEEEec
Confidence 999999999999999999999999999999999999999999987643 34555555554 88999998 568999999
Q ss_pred CCCeEEEEEcCCCcceeeecccccceeEE-EEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEeccc-ccCeEEEEEeCC
Q 047355 165 LDGTIQIWNMDSSAAKFTLDAHEKGINCI-DYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGH-TNNVTAVCFHPE 242 (312)
Q Consensus 165 ~dg~v~iwd~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h-~~~i~~l~~~~~ 242 (312)
.|+++++||++.........+|...+.|+ .....+.+.++++|+.|+.|++||..++..+..+.+| ...+..++++|.
T Consensus 354 ~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~ 433 (456)
T KOG0266|consen 354 LDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPT 433 (456)
T ss_pred CCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCC
Confidence 99999999999999988888888765444 3334678999999999999999999999999999999 888999999999
Q ss_pred CcEEEEEe--CCCcEEEEeCC
Q 047355 243 LRIIITAS--EDGTILIWNAT 261 (312)
Q Consensus 243 ~~~l~s~s--~dg~v~iwd~~ 261 (312)
..++++++ .|+.+++|...
T Consensus 434 ~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 434 ENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred cCeeeecCcCCCceEEEecCC
Confidence 99999999 78999999764
No 41
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.6e-34 Score=248.05 Aligned_cols=290 Identities=17% Similarity=0.279 Sum_probs=248.1
Q ss_pred hhhhhhcccCcEEEEEEcCCCCeEEEEecCCeEEEEeccCCce--eeeEEecCCceeEEEEeeCCcEEEEecCCCeEEEE
Q 047355 9 IEKEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTT--EKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVF 86 (312)
Q Consensus 9 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iw 86 (312)
+.++|.+|.+.|.++.|+.|.++|++|+.|-++++|.++..+. ...+..|..+|..+.|..+...+++.+.||.+.+|
T Consensus 137 l~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W 216 (893)
T KOG0291|consen 137 LHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVW 216 (893)
T ss_pred EeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecCceEEEE
Confidence 4578999999999999999999999999999999999987665 45667889999999999999999999999999999
Q ss_pred EccC-----------------------cee------eeee-----cccccceeEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 047355 87 DYNT-----------------------MAS------VKEF-----EAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEK 132 (312)
Q Consensus 87 d~~~-----------------------~~~------~~~~-----~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~ 132 (312)
.... ++. .... ......|++.+||+....|++|-..|...+|++..
T Consensus 217 ~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~ 296 (893)
T KOG0291|consen 217 TCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPD 296 (893)
T ss_pred EecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCC
Confidence 7651 000 0011 11236789999999999999999999999999764
Q ss_pred CceeeeEecCCccceEEEEeCCCCCCEEEEE-eCCCeEEEEEcCCCcceeeecccccceeEEEEEEcCCceEEEEEeCCC
Q 047355 133 NWECTQTFEGHSHYVMQSAFNPKDLNTFASA-SLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDF 211 (312)
Q Consensus 133 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~-s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg 211 (312)
...++.+.-....+..+.|+..+ ..++.| +.-|.+-+|+..+..-+...++|...++++++ +|||.++|+|++||
T Consensus 297 -f~lih~LSis~~~I~t~~~N~tG-DWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~Y--SpDgq~iaTG~eDg 372 (893)
T KOG0291|consen 297 -FNLIHSLSISDQKILTVSFNSTG-DWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAY--SPDGQLIATGAEDG 372 (893)
T ss_pred -ceEEEEeecccceeeEEEecccC-CEEEEcCCccceEEEEEeeccceeeeccccccceeeEEE--CCCCcEEEeccCCC
Confidence 46677777777889999998754 566555 45689999999999999999999999999986 78999999999999
Q ss_pred eEEEEeCCCCeEEEEecccccCeEEEEEeCCCcEEEEEeCCCcEEEEeCCCc----------------------------
Q 047355 212 TVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITASEDGTILIWNATTF---------------------------- 263 (312)
Q Consensus 212 ~i~vwd~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~s~dg~v~iwd~~~~---------------------------- 263 (312)
+|++||..++-|..++..|++.|+.+.|+..++.+++.|-||+||.||+..+
T Consensus 373 KVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~A 452 (893)
T KOG0291|consen 373 KVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCA 452 (893)
T ss_pred cEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEe
Confidence 9999999999999999999999999999999999999999999999998543
Q ss_pred ----------------ceeeecccCccceEEEEEecCCCeEEEEecCCeEEEEec
Q 047355 264 ----------------RLQNTLSSGLERVWSIGYKKGSNQVAFGCDNGTLIVKIG 302 (312)
Q Consensus 264 ----------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~v~~~ 302 (312)
+++-.+.+|.++|.+++|+|+++.|++++.|.+|++|-=
T Consensus 453 G~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~i 507 (893)
T KOG0291|consen 453 GAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDI 507 (893)
T ss_pred eccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEe
Confidence 223345677788999999999999999999999999853
No 42
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.2e-35 Score=249.88 Aligned_cols=247 Identities=25% Similarity=0.393 Sum_probs=228.4
Q ss_pred eEEecCCceeEEEEeeCCcEEEEecCCCeEEEEEccCceeeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 047355 54 SVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKN 133 (312)
Q Consensus 54 ~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~ 133 (312)
.+..+...|.++.|+|...+++++-.+|.|.+||.++...++.++...-||++..|-+-.+.+++|++|..|++|+.++.
T Consensus 8 k~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ 87 (794)
T KOG0276|consen 8 KFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTG 87 (794)
T ss_pred HhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccc
Confidence 34457788999999999999999999999999999999999999999999999999998999999999999999998876
Q ss_pred ceeeeEecCCccceEEEEeCCCCCCEEEEEeCCCeEEEEEcCCC-cceeeecccccceeEEEEEEcCCceEEEEEeCCCe
Q 047355 134 WECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSS-AAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFT 212 (312)
Q Consensus 134 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~ 212 (312)
+.++.|+.|..++.+++.+|.. .+++++|.|-+|++||.+.. .+.+++++|..-|.++++-| .|...+|+++-|++
T Consensus 88 -ekV~~FeAH~DyIR~iavHPt~-P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnP-kD~ntFaS~sLDrT 164 (794)
T KOG0276|consen 88 -EKVKTFEAHSDYIRSIAVHPTL-PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNP-KDPNTFASASLDRT 164 (794)
T ss_pred -eeeEEeeccccceeeeeecCCC-CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecC-CCccceeeeecccc
Confidence 5578899999999999999965 79999999999999999876 56788999999999998754 46778999999999
Q ss_pred EEEEeCCCCeEEEEecccccCeEEEEEeC--CCcEEEEEeCCCcEEEEeCCCcceeeecccCccceEEEEEecCCCeEEE
Q 047355 213 VKVWDYETKTCVQILEGHTNNVTAVCFHP--ELRIIITASEDGTILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAF 290 (312)
Q Consensus 213 i~vwd~~~~~~~~~~~~h~~~i~~l~~~~--~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 290 (312)
|+||.+.+..+..++.+|...|++++|-+ |.++|+||+.|.+|+|||+++...++++++|-..|..+.|.|....|++
T Consensus 165 VKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiis 244 (794)
T KOG0276|consen 165 VKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIIS 244 (794)
T ss_pred EEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEE
Confidence 99999999999999999999999999976 5689999999999999999999999999999999999999999999999
Q ss_pred EecCCeEEEEecc
Q 047355 291 GCDNGTLIVKIGN 303 (312)
Q Consensus 291 ~~~~g~i~v~~~~ 303 (312)
|++||+++||-..
T Consensus 245 gsEDGTvriWhs~ 257 (794)
T KOG0276|consen 245 GSEDGTVRIWNSK 257 (794)
T ss_pred ecCCccEEEecCc
Confidence 9999999999765
No 43
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=3.8e-34 Score=219.82 Aligned_cols=278 Identities=21% Similarity=0.293 Sum_probs=234.3
Q ss_pred hhhhhcccCcEEEEEEcCCCCeEEEEecCCeEEEEeccCCceee--eEEecCCceeEEEEee-CCcEEEEecCCCeEEEE
Q 047355 10 EKEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEK--SVKVTDSPVRTAKFVA-REHWIVCGSDDKFIRVF 86 (312)
Q Consensus 10 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~--~~~~~~~~v~~~~~~~-~~~~l~~g~~dg~i~iw 86 (312)
.+++.+|...|.+++|+.+|..|++|+.|+++.+|+++..+... ..+.|.+.+..+++.+ ....+++++.|.+|++|
T Consensus 13 ~r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~w 92 (313)
T KOG1407|consen 13 RRELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIW 92 (313)
T ss_pred hHHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEE
Confidence 47888999999999999999999999999999999998664433 3456777788888876 56789999999999999
Q ss_pred EccCceeeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeCC
Q 047355 87 DYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLD 166 (312)
Q Consensus 87 d~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d 166 (312)
|..+.++........+.|. +.|+|++.+++.++.|..|-+.|.++.. .... ......+....|+- ..++|+.....
T Consensus 93 d~r~~k~~~~i~~~~eni~-i~wsp~g~~~~~~~kdD~it~id~r~~~-~~~~-~~~~~e~ne~~w~~-~nd~Fflt~Gl 168 (313)
T KOG1407|consen 93 DIRSGKCTARIETKGENIN-ITWSPDGEYIAVGNKDDRITFIDARTYK-IVNE-EQFKFEVNEISWNN-SNDLFFLTNGL 168 (313)
T ss_pred EeccCcEEEEeeccCcceE-EEEcCCCCEEEEecCcccEEEEEecccc-eeeh-hcccceeeeeeecC-CCCEEEEecCC
Confidence 9999998888766555554 7799999999999999999999987542 2221 12233456677773 44677777778
Q ss_pred CeEEEEEcCCCcceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEecccccCeEEEEEeCCCcEE
Q 047355 167 GTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRII 246 (312)
Q Consensus 167 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~i~~l~~~~~~~~l 246 (312)
|+|.|......+++..+++|.. +|+++.++|+|+++|+|+.|-.+.+||+...-|++.+.-+.=+|+.|.|+.+|++|
T Consensus 169 G~v~ILsypsLkpv~si~AH~s--nCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~l 246 (313)
T KOG1407|consen 169 GCVEILSYPSLKPVQSIKAHPS--NCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRML 246 (313)
T ss_pred ceEEEEeccccccccccccCCc--ceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCccee
Confidence 9999999999999999999974 56666679999999999999999999999999999998899999999999999999
Q ss_pred EEEeCCCcEEEEeCCCcceeeecccCccceEEEEEecCCCeEEEEecC
Q 047355 247 ITASEDGTILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGCDN 294 (312)
Q Consensus 247 ~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~ 294 (312)
|+||+|..|-|=+++++..+.++. ..++..+|+|+|.-.+||.+++|
T Consensus 247 ASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 247 ASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred eccCccceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecC
Confidence 999999999999999998887764 45678899999999999999885
No 44
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.1e-35 Score=235.07 Aligned_cols=283 Identities=21% Similarity=0.354 Sum_probs=247.2
Q ss_pred cccCcEEEEEEcCCCCeEEEEecCCeEEEEeccCCceee--------eEEecCCceeEEEEeeCCcEEEEecCCCeEEEE
Q 047355 15 QKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEK--------SVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVF 86 (312)
Q Consensus 15 ~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~--------~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iw 86 (312)
+....+-+..|+|||++|++|+.||-|.+||+.+++..+ .+...+.+|.++.|+.|.+.+++|+.||.|++|
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW 290 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence 445678899999999999999999999999998776544 355678899999999999999999999999999
Q ss_pred EccCceeeeeec-ccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeC
Q 047355 87 DYNTMASVKEFE-AHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASL 165 (312)
Q Consensus 87 d~~~~~~~~~~~-~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~ 165 (312)
.+.++.++..+. .|+..|+++.|+.++..+++++.|.++++--+..+ .+.+.+.+|+.+|....|.+ +++.+++++.
T Consensus 291 ri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSG-K~LKEfrGHsSyvn~a~ft~-dG~~iisaSs 368 (508)
T KOG0275|consen 291 RIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSG-KCLKEFRGHSSYVNEATFTD-DGHHIISASS 368 (508)
T ss_pred EEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccc-hhHHHhcCccccccceEEcC-CCCeEEEecC
Confidence 999999999986 89999999999999999999999999999987765 67788999999999999997 5689999999
Q ss_pred CCeEEEEEcCCCcceeeecc--cccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEeccc---ccCeEEEEEe
Q 047355 166 DGTIQIWNMDSSAAKFTLDA--HEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGH---TNNVTAVCFH 240 (312)
Q Consensus 166 dg~v~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h---~~~i~~l~~~ 240 (312)
||+|++|+.++.++..++.. ...+|+.+-..+. +..-++.+...++|++.++. ++.++.+..- .+..-+.+.+
T Consensus 369 DgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PK-npeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lS 446 (508)
T KOG0275|consen 369 DGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPK-NPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILS 446 (508)
T ss_pred CccEEEecCcchhhhhhccCCCCcccceeEEEcCC-CCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEec
Confidence 99999999999988877654 3455666655443 34567788889999999984 7777776432 3456677889
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCcceeeecccCccceEEEEEecCCCeEEEEecCCeEEEEe
Q 047355 241 PELRIIITASEDGTILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGCDNGTLIVKI 301 (312)
Q Consensus 241 ~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~v~~ 301 (312)
|.|.++.+.++|+.++.|.+.++++.+++.-|...|..++-+|.-|.||+=++||.+.+|-
T Consensus 447 pkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 447 PKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred CCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 9999999999999999999999999999999999999999999999999999999999884
No 45
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=5.7e-35 Score=233.45 Aligned_cols=247 Identities=25% Similarity=0.447 Sum_probs=225.2
Q ss_pred eeEEecCCceeEEEEeeCCcEEEEecCCCeEEEEEccCceeeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 047355 53 KSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEK 132 (312)
Q Consensus 53 ~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~ 132 (312)
+.+.+|.+-|+++++.|-.+++++|+.|++|+|||+.+++....+.+|-..|..+++++-.+|+.+++.|+.|+.||+..
T Consensus 145 rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~ 224 (460)
T KOG0285|consen 145 RVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEY 224 (460)
T ss_pred hhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechh
Confidence 34567889999999999999999999999999999999999889999999999999999999999999999999999987
Q ss_pred CceeeeEecCCccceEEEEeCCCCCCEEEEEeCCCeEEEEEcCCCcceeeecccccceeEEEEEEcCCceEEEEEeCCCe
Q 047355 133 NWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFT 212 (312)
Q Consensus 133 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~ 212 (312)
+ +.++.+-+|-+.|.++..+|. ...+++|+.|.++|+||+++...+..+.+|..+|..+.+. +-...+++|+.|++
T Consensus 225 n-kvIR~YhGHlS~V~~L~lhPT-ldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~--~~dpqvit~S~D~t 300 (460)
T KOG0285|consen 225 N-KVIRHYHGHLSGVYCLDLHPT-LDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQ--PTDPQVITGSHDST 300 (460)
T ss_pred h-hhHHHhccccceeEEEecccc-ceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEee--cCCCceEEecCCce
Confidence 6 667788899999999999985 5799999999999999999999999999999999988653 23345899999999
Q ss_pred EEEEeCCCCeEEEEecccccCeEEEEEeCCCcEEEEEeCCCcEEEEeCCCcceeeecccCccceEEEEEecCCCeEEEEe
Q 047355 213 VKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITASEDGTILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGC 292 (312)
Q Consensus 213 i~vwd~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 292 (312)
|++||++.++...++..|...|++++.+|....+|+++.| .|+-|++..++..+.+.+|..-+.+++.+.| ..+++|+
T Consensus 301 vrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD-~v~~~G~ 378 (460)
T KOG0285|consen 301 VRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSD-GVLVSGG 378 (460)
T ss_pred EEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceeeeeeeccC-ceEEEcC
Confidence 9999999999999999999999999999999999999987 5789999999999999999999999998877 5788999
Q ss_pred cCCeEEEEeccCC
Q 047355 293 DNGTLIVKIGNSS 305 (312)
Q Consensus 293 ~~g~i~v~~~~~~ 305 (312)
++|.+.+|-+++-
T Consensus 379 dng~~~fwdwksg 391 (460)
T KOG0285|consen 379 DNGSIMFWDWKSG 391 (460)
T ss_pred CceEEEEEecCcC
Confidence 9999999988753
No 46
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.3e-33 Score=217.73 Aligned_cols=292 Identities=20% Similarity=0.301 Sum_probs=240.6
Q ss_pred hhhhhhhhhcccCcEEEEEEcCCCCeEEEEecCCeEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEecC--CCeE
Q 047355 6 ELQIEKEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSD--DKFI 83 (312)
Q Consensus 6 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~--dg~i 83 (312)
+++..+.|.....+|.++.|+++|.+|++++.|.++++||..+++..+++..+...+..++|......++.++. |.+|
T Consensus 3 s~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tI 82 (311)
T KOG1446|consen 3 SFRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTI 82 (311)
T ss_pred ccccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCce
Confidence 45556777777889999999999999999999999999999999999999988888999999988888888776 8999
Q ss_pred EEEEccCceeeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEE
Q 047355 84 RVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASA 163 (312)
Q Consensus 84 ~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~ 163 (312)
+..++.+.+.+..+.+|...|.+++.+|.+..+++++.|++|++||++.. .+...+.....+ ..+|+|. +-.||++
T Consensus 83 ryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~-~cqg~l~~~~~p--i~AfDp~-GLifA~~ 158 (311)
T KOG1446|consen 83 RYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVK-KCQGLLNLSGRP--IAAFDPE-GLIFALA 158 (311)
T ss_pred EEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCC-CCceEEecCCCc--ceeECCC-CcEEEEe
Confidence 99999999999999999999999999999999999999999999999843 333333222222 3578885 4678888
Q ss_pred eCCCeEEEEEcCCC--cceeeec---ccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEecccccCe---E
Q 047355 164 SLDGTIQIWNMDSS--AAKFTLD---AHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNV---T 235 (312)
Q Consensus 164 s~dg~v~iwd~~~~--~~~~~~~---~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~i---~ 235 (312)
.....|++||++.- .+..++. +.....+.+. +++||++++.+...+.+++.|.-.|.....+.++...- -
T Consensus 159 ~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~--FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~ 236 (311)
T KOG1446|consen 159 NGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLE--FSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPL 236 (311)
T ss_pred cCCCeEEEEEecccCCCCceeEccCCCCccceeeeE--EcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcce
Confidence 77779999999874 2222322 2233344444 68999999999999999999999999888888775432 4
Q ss_pred EEEEeCCCcEEEEEeCCCcEEEEeCCCcceeeeccc-CccceEEEEEecCCCeEEEEecCCeEEEEeccCC
Q 047355 236 AVCFHPELRIIITASEDGTILIWNATTFRLQNTLSS-GLERVWSIGYKKGSNQVAFGCDNGTLIVKIGNSS 305 (312)
Q Consensus 236 ~l~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~g~i~v~~~~~~ 305 (312)
..+|.||++++++|+.||+|.+|++++++....+.+ +...+.++.|+|.-.+++ +.+..+.+|.+...
T Consensus 237 ~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~--sa~s~l~fw~p~~~ 305 (311)
T KOG1446|consen 237 SATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFV--SASSNLVFWLPDED 305 (311)
T ss_pred eEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeee--ecCceEEEEecccc
Confidence 778999999999999999999999999998888887 578899999998755554 67778999988743
No 47
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=1.8e-35 Score=225.93 Aligned_cols=287 Identities=16% Similarity=0.266 Sum_probs=253.1
Q ss_pred hhhcccCcEEEEEEcC---CCCeEEEEecCCeEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEecCCCeEEEEEc
Q 047355 12 EFIQKSDRVKSVDFHP---TQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDY 88 (312)
Q Consensus 12 ~~~~~~~~i~~~~~~~---~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~ 88 (312)
...+|..+|-.++|+| +|=+|++++.||.-.+-+-+++..+.+|.+|.+.|..+....+....++++.|=+-++||.
T Consensus 9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a 88 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDA 88 (334)
T ss_pred EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhh
Confidence 3568999999999985 7889999999999999999999999999999999999999988888899999999999999
Q ss_pred cCceeeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeCCCe
Q 047355 89 NTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGT 168 (312)
Q Consensus 89 ~~~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~ 168 (312)
-++..++.+ .|..-|.+++|+.+.++|+||+.+..+|+||++...-+...+.+|...|..+.|...+ ..+++.+.|++
T Consensus 89 ~tgdelhsf-~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD-~~iLSSadd~t 166 (334)
T KOG0278|consen 89 VTGDELHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHED-KCILSSADDKT 166 (334)
T ss_pred hhhhhhhhh-hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccC-ceEEeeccCCc
Confidence 888777776 5777899999999999999999999999999998877888899999999999998755 67888899999
Q ss_pred EEEEEcCCCcceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEecccccCeEEEEEeCCCcEEEE
Q 047355 169 IQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIIT 248 (312)
Q Consensus 169 v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s 248 (312)
||+||.+++...++++- ..+|+++. .+++|.++..+ .-+.|++||..+..+++.++. ...|.+..++|+...+++
T Consensus 167 VRLWD~rTgt~v~sL~~-~s~VtSlE--vs~dG~ilTia-~gssV~Fwdaksf~~lKs~k~-P~nV~SASL~P~k~~fVa 241 (334)
T KOG0278|consen 167 VRLWDHRTGTEVQSLEF-NSPVTSLE--VSQDGRILTIA-YGSSVKFWDAKSFGLLKSYKM-PCNVESASLHPKKEFFVA 241 (334)
T ss_pred eEEEEeccCcEEEEEec-CCCCccee--eccCCCEEEEe-cCceeEEeccccccceeeccC-ccccccccccCCCceEEe
Confidence 99999999998887754 34567766 46778766554 556899999999888887764 456999999999999999
Q ss_pred EeCCCcEEEEeCCCcceeeec-ccCccceEEEEEecCCCeEEEEecCCeEEEEeccCC
Q 047355 249 ASEDGTILIWNATTFRLQNTL-SSGLERVWSIGYKKGSNQVAFGCDNGTLIVKIGNSS 305 (312)
Q Consensus 249 ~s~dg~v~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~~g~i~v~~~~~~ 305 (312)
|++|..++-||+.+++.+... ++|.++|.||.|+|||...++|+.||+|++|...+.
T Consensus 242 Gged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~ 299 (334)
T KOG0278|consen 242 GGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPG 299 (334)
T ss_pred cCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCC
Confidence 999999999999999887774 889999999999999999999999999999987643
No 48
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=2.4e-35 Score=239.41 Aligned_cols=286 Identities=19% Similarity=0.316 Sum_probs=242.3
Q ss_pred hhhhhhhhcccCcEEEEEEcCCCCeEEEEecCCeEEEEeccCCc--eeeeEEecCCceeEEEEeeCCcEEEEecCCCeEE
Q 047355 7 LQIEKEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQT--TEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIR 84 (312)
Q Consensus 7 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~ 84 (312)
-...+.+.-|...+..+.|-++...|++|+.|..|++|+....+ ...++.+..++++.+.|.++++.++++++|+.++
T Consensus 165 S~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r 244 (459)
T KOG0288|consen 165 SRALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLR 244 (459)
T ss_pred hhhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCcee
Confidence 34455667788999999999999999999999999999986655 5567777788999999999999999999999999
Q ss_pred EEEccCceeeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEe
Q 047355 85 VFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASAS 164 (312)
Q Consensus 85 iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s 164 (312)
+|+++......++.+|+++|+++.|......+++|+.|.++|.||+... .+.++... ...+..+... ...+++|-
T Consensus 245 ~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~-~C~kt~l~-~S~cnDI~~~---~~~~~SgH 319 (459)
T KOG0288|consen 245 LWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKA-YCSKTVLP-GSQCNDIVCS---ISDVISGH 319 (459)
T ss_pred eeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhh-heeccccc-cccccceEec---ceeeeecc
Confidence 9999999999999999999999999877666999999999999998764 34333221 1222333333 35688999
Q ss_pred CCCeEEEEEcCCCcceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEeccc----ccCeEEEEEe
Q 047355 165 LDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGH----TNNVTAVCFH 240 (312)
Q Consensus 165 ~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h----~~~i~~l~~~ 240 (312)
.|++||+||.++..+...++.+. .|++++ .+.++.-+.+.+.|.++.+.|.++.+..+.+.+. ....+.+.||
T Consensus 320 ~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~--ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfS 396 (459)
T KOG0288|consen 320 FDKKVRFWDIRSADKTRSVPLGG-RVTSLD--LSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFS 396 (459)
T ss_pred cccceEEEeccCCceeeEeecCc-ceeeEe--eccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEEC
Confidence 99999999999999888887775 788887 4678888999999999999999998888777643 2358899999
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCcceeeecccCcc--ceEEEEEecCCCeEEEEecCCeEEEE
Q 047355 241 PELRIIITASEDGTILIWNATTFRLQNTLSSGLE--RVWSIGYKKGSNQVAFGCDNGTLIVK 300 (312)
Q Consensus 241 ~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~~g~i~v~ 300 (312)
|++.|+|+||.||.|+||++.++++...+..... .+++++|+|-|..|++++.++.+.+|
T Consensus 397 pd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 397 PDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred CCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 9999999999999999999999999888776654 59999999999999999999998887
No 49
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.3e-32 Score=229.77 Aligned_cols=294 Identities=22% Similarity=0.357 Sum_probs=251.8
Q ss_pred hhhhhcccCcEEEEEEcCCCCeEEEEecCCeEEEEeccCCc--eeeeEEecCCceeEEEEeeCCcEEEEecCC--CeEEE
Q 047355 10 EKEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQT--TEKSVKVTDSPVRTAKFVAREHWIVCGSDD--KFIRV 85 (312)
Q Consensus 10 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d--g~i~i 85 (312)
...|.+|.-.++-..|+|.|-++++|...|+|||||....+ +...++...++|..+.|..++++|++.++. +..++
T Consensus 52 ~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~ 131 (603)
T KOG0318|consen 52 VDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHV 131 (603)
T ss_pred eeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEE
Confidence 34688999999999999999999999999999999975433 234567788999999999999999887753 33444
Q ss_pred EEccCceeeeeecccccceeEEEEecCCCE-EEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEe
Q 047355 86 FDYNTMASVKEFEAHEDYIRSLAVHPTFPF-VLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASAS 164 (312)
Q Consensus 86 wd~~~~~~~~~~~~h~~~i~~~~~~~~~~~-l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s 164 (312)
+-.+++..+-++.+|...|++++|-|..++ ++||++|++|-+|+-. .++-..++..|..+|.++.|+|. +.+|++.+
T Consensus 132 F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGP-PFKFk~s~r~HskFV~~VRysPD-G~~Fat~g 209 (603)
T KOG0318|consen 132 FLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGP-PFKFKSSFREHSKFVNCVRYSPD-GSRFATAG 209 (603)
T ss_pred EEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCC-CeeeeecccccccceeeEEECCC-CCeEEEec
Confidence 444566678899999999999999999887 7899999999999843 34555677889999999999995 79999999
Q ss_pred CCCeEEEEEcCCCcceeeec---ccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEecccc---cCeEEEE
Q 047355 165 LDGTIQIWNMDSSAAKFTLD---AHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHT---NNVTAVC 238 (312)
Q Consensus 165 ~dg~v~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~---~~i~~l~ 238 (312)
.||++.+||-.+++.+..+. +|+..|..+.| +||+..+++.+.|.++++||..+.++++++..-. ..--.+-
T Consensus 210 sDgki~iyDGktge~vg~l~~~~aHkGsIfalsW--sPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~l 287 (603)
T KOG0318|consen 210 SDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSW--SPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCL 287 (603)
T ss_pred CCccEEEEcCCCccEEEEecCCCCccccEEEEEE--CCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEE
Confidence 99999999999999888887 89999999986 7889999999999999999999999988876432 2333455
Q ss_pred EeCCCcEEEEEeCCCcEEEEeCCCcceeeecccCccceEEEEEecCCCeEEEEecCCeEEEEeccCCCCcc
Q 047355 239 FHPELRIIITASEDGTILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGCDNGTLIVKIGNSSGCDS 309 (312)
Q Consensus 239 ~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~v~~~~~~~~~~ 309 (312)
|. +..|++.+.+|+|.+++......+..+.+|...+.++..+||++.|.+|+.||.|.-|-..+-.||.
T Consensus 288 Wq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~ 356 (603)
T KOG0318|consen 288 WQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDR 356 (603)
T ss_pred Ee--CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccc
Confidence 54 4679999999999999999999999999999999999999999999999999999999888777764
No 50
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.6e-33 Score=220.44 Aligned_cols=271 Identities=20% Similarity=0.325 Sum_probs=213.6
Q ss_pred cccCcEEEEEEcCC-CCeEEEEecCCeEEEEeccCC--ceeeeEEecCCceeEEEEeeCCcEEEEecCCCeEEEEEccCc
Q 047355 15 QKSDRVKSVDFHPT-QPWVLASLYSGTVCIWNYHSQ--TTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTM 91 (312)
Q Consensus 15 ~~~~~i~~~~~~~~-~~~l~~~~~dg~v~iw~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~ 91 (312)
.+.|.|.+|+|+|. ...++++++||+||+|+++.. ...+....+.+++.+++|+.++..+++|+.|+.+++||+.++
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 35689999999994 456668999999999999762 233556778899999999999999999999999999999998
Q ss_pred eeeeeecccccceeEEEEecCCC--EEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeCCCeE
Q 047355 92 ASVKEFEAHEDYIRSLAVHPTFP--FVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTI 169 (312)
Q Consensus 92 ~~~~~~~~h~~~i~~~~~~~~~~--~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v 169 (312)
....+..|..+|.++.|-+... .|+|||+|+++|+||.+.... ..++. ..+.+..+.. ...+++++..+..|
T Consensus 105 -Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~p-v~t~~-LPeRvYa~Dv---~~pm~vVata~r~i 178 (347)
T KOG0647|consen 105 -QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNP-VATLQ-LPERVYAADV---LYPMAVVATAERHI 178 (347)
T ss_pred -CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCe-eeeee-ccceeeehhc---cCceeEEEecCCcE
Confidence 5567889999999999987655 789999999999999886533 22222 1223333322 23578888899999
Q ss_pred EEEEcCCCcceeeec--ccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCC--eEEEEeccccc---------CeEE
Q 047355 170 QIWNMDSSAAKFTLD--AHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETK--TCVQILEGHTN---------NVTA 236 (312)
Q Consensus 170 ~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~--~~~~~~~~h~~---------~i~~ 236 (312)
.+|++++....+... .-.-.+.|++++...++ .+.|+-+|.+.+..+..+ +.-..++.|+. .|++
T Consensus 179 ~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~--~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNs 256 (347)
T KOG0647|consen 179 AVYNLENPPTEFKRIESPLKWQTRCVACFQDKDG--FALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNS 256 (347)
T ss_pred EEEEcCCCcchhhhhcCcccceeeEEEEEecCCc--eEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecc
Confidence 999998765443221 12334678887766555 488999999999988765 44456677763 4788
Q ss_pred EEEeCCCcEEEEEeCCCcEEEEeCCCcceeeecccCccceEEEEEecCCCeEEEEec
Q 047355 237 VCFHPELRIIITASEDGTILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGCD 293 (312)
Q Consensus 237 l~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 293 (312)
|+|+|.-..|+|+++||+..+||-.....+.+.+.+...+.+..|+.+|+.+|.+..
T Consensus 257 i~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~g 313 (347)
T KOG0647|consen 257 IAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYALG 313 (347)
T ss_pred eEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEee
Confidence 999999899999999999999998777777778888999999999999999997653
No 51
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-33 Score=214.42 Aligned_cols=244 Identities=19% Similarity=0.302 Sum_probs=215.3
Q ss_pred eeeEEecCCceeEEEEeeCCcEEEEecCCCeEEEEEccCceeeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCC
Q 047355 52 EKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWE 131 (312)
Q Consensus 52 ~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~ 131 (312)
...+..++++|..+.|+-+|++.++++.|.+|++|+...+..++++.+|..+|..++.+.++..+++|+.|..+.+||++
T Consensus 10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~ 89 (307)
T KOG0316|consen 10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVN 89 (307)
T ss_pred ceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcc
Confidence 34566788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeEecCCccceEEEEeCCCCCCEEEEEeCCCeEEEEEcCCC--cceeeecccccceeEEEEEEcCCceEEEEEeC
Q 047355 132 KNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSS--AAKFTLDAHEKGINCIDYFITSDKVYLITGSD 209 (312)
Q Consensus 132 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~ 209 (312)
++ +..+.+.+|...|..+.|+. +...+++|+-|.++++||.++. ++++.+.....+|.+++. .+..|++|+.
T Consensus 90 TG-kv~Rr~rgH~aqVNtV~fNe-esSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v----~~heIvaGS~ 163 (307)
T KOG0316|consen 90 TG-KVDRRFRGHLAQVNTVRFNE-ESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDV----AEHEIVAGSV 163 (307)
T ss_pred cC-eeeeecccccceeeEEEecC-cceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEe----cccEEEeecc
Confidence 87 67788999999999999996 5689999999999999999864 566777777778888774 3456899999
Q ss_pred CCeEEEEeCCCCeEEEEecccccCeEEEEEeCCCcEEEEEeCCCcEEEEeCCCcceeeecccCccceEE--EEEecCCCe
Q 047355 210 DFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITASEDGTILIWNATTFRLQNTLSSGLERVWS--IGYKKGSNQ 287 (312)
Q Consensus 210 dg~i~vwd~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~--~~~~~~~~~ 287 (312)
||+++.||++.++...-+- ..+|++++|++++...+.++-|+++++.|-.+++++...++|...-+. ..++.....
T Consensus 164 DGtvRtydiR~G~l~sDy~--g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdth 241 (307)
T KOG0316|consen 164 DGTVRTYDIRKGTLSSDYF--GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTH 241 (307)
T ss_pred CCcEEEEEeecceeehhhc--CCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeeccccee
Confidence 9999999999988766554 457999999999999999999999999999999999999998765443 346677789
Q ss_pred EEEEecCCeEEEEecc
Q 047355 288 VAFGCDNGTLIVKIGN 303 (312)
Q Consensus 288 l~~~~~~g~i~v~~~~ 303 (312)
+++|++||.+++|=..
T Consensus 242 V~sgSEDG~Vy~wdLv 257 (307)
T KOG0316|consen 242 VFSGSEDGKVYFWDLV 257 (307)
T ss_pred EEeccCCceEEEEEec
Confidence 9999999999998543
No 52
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=4.3e-33 Score=215.08 Aligned_cols=238 Identities=21% Similarity=0.433 Sum_probs=201.3
Q ss_pred cccCcEEEEEEcCCCCeEEEEecCCeEEEEeccC--CceeeeEEecCCceeEEEEeeCCcEEEEecCCCeEEEEEccC--
Q 047355 15 QKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHS--QTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNT-- 90 (312)
Q Consensus 15 ~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~-- 90 (312)
+|...|+++||+|.|++|++++.|.++.||.-.. .++...+.+|+..|.+++|+++|.+|++++.|++|-+|.+..
T Consensus 59 ~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~dedd 138 (312)
T KOG0645|consen 59 GHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDD 138 (312)
T ss_pred cchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCC
Confidence 5788999999999999999999999999997543 366778899999999999999999999999999999998863
Q ss_pred -ceeeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCC--CCceeeeEecCCccceEEEEeCCCCCCEEEEEeCCC
Q 047355 91 -MASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWE--KNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDG 167 (312)
Q Consensus 91 -~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg 167 (312)
.++...++.|++.|..+.|||...+|+++|.|.+||+|+-. ....+.+++.+|...|..+.|+|. +..+++++.|+
T Consensus 139 Efec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~-G~rl~s~sdD~ 217 (312)
T KOG0645|consen 139 EFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNI-GSRLVSCSDDG 217 (312)
T ss_pred cEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCC-CceEEEecCCc
Confidence 45778899999999999999999999999999999999754 345678899999999999999985 48999999999
Q ss_pred eEEEEEcCCCcceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCe--E-----EEEecccccCeEEEEEe
Q 047355 168 TIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKT--C-----VQILEGHTNNVTAVCFH 240 (312)
Q Consensus 168 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~--~-----~~~~~~h~~~i~~l~~~ 240 (312)
+++||-+.+.-+ ..|...++.+.+. ...|++++.|+.|++|.-.... + .+.-..|...|+++.|+
T Consensus 218 tv~Iw~~~~~~~----~~~sr~~Y~v~W~----~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~ 289 (312)
T KOG0645|consen 218 TVSIWRLYTDLS----GMHSRALYDVPWD----NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWN 289 (312)
T ss_pred ceEeeeeccCcc----hhcccceEeeeec----ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEc
Confidence 999998763321 1355667777763 3469999999999999754321 1 12234688899999999
Q ss_pred CC-CcEEEEEeCCCcEEEEeCC
Q 047355 241 PE-LRIIITASEDGTILIWNAT 261 (312)
Q Consensus 241 ~~-~~~l~s~s~dg~v~iwd~~ 261 (312)
|. ..+|++|+.||+|++|.+.
T Consensus 290 p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 290 PKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CCCCCceeecCCCceEEEEEec
Confidence 94 6789999999999999874
No 53
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.6e-33 Score=220.39 Aligned_cols=248 Identities=18% Similarity=0.338 Sum_probs=212.1
Q ss_pred eEEecCCceeEEEEeeCCcEEEEecCCCeEEEEEcc-CceeeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 047355 54 SVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYN-TMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEK 132 (312)
Q Consensus 54 ~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~-~~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~ 132 (312)
.+.+|.+.|..+.|.|++..+++|+.|..|.+|+.. ..+..-++++|.+.|..+.+.++++.++++|.|.+++.||.++
T Consensus 42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~t 121 (338)
T KOG0265|consen 42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAET 121 (338)
T ss_pred hcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEeccc
Confidence 345788999999999999999999999999999954 4455667789999999999999999999999999999999987
Q ss_pred CceeeeEecCCccceEEEEeCCCCCCEEEEEeCCCeEEEEEcCCCcceeeecccccceeEEEEEEcCCceEEEEEeCCCe
Q 047355 133 NWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFT 212 (312)
Q Consensus 133 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~ 212 (312)
+ +..+++.+|...+..+.-..-+..++.+++.|+++++||+++...+++++. +..++++.| ...+..+.+|+-|+.
T Consensus 122 G-~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~-kyqltAv~f--~d~s~qv~sggIdn~ 197 (338)
T KOG0265|consen 122 G-KRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN-KYQLTAVGF--KDTSDQVISGGIDND 197 (338)
T ss_pred c-eeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcccc-ceeEEEEEe--cccccceeeccccCc
Confidence 6 667889999999998885555667899999999999999998887766643 234555554 444556889999999
Q ss_pred EEEEeCCCCeEEEEecccccCeEEEEEeCCCcEEEEEeCCCcEEEEeCCCc----ceeeecccCc----cceEEEEEecC
Q 047355 213 VKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITASEDGTILIWNATTF----RLQNTLSSGL----ERVWSIGYKKG 284 (312)
Q Consensus 213 i~vwd~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~s~dg~v~iwd~~~~----~~~~~~~~~~----~~v~~~~~~~~ 284 (312)
|++||++....+.++.||.++|+.+..+|++.++.+-+-|.++++||++.+ +.+..+.++. -....++|+|+
T Consensus 198 ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~ 277 (338)
T KOG0265|consen 198 IKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPN 277 (338)
T ss_pred eeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCC
Confidence 999999999999999999999999999999999999999999999999765 3344555543 24788999999
Q ss_pred CCeEEEEecCCeEEEEeccCC
Q 047355 285 SNQVAFGCDNGTLIVKIGNSS 305 (312)
Q Consensus 285 ~~~l~~~~~~g~i~v~~~~~~ 305 (312)
+..+.+|+.|.-++||-..+.
T Consensus 278 ~~~i~ags~dr~vyvwd~~~r 298 (338)
T KOG0265|consen 278 GTKITAGSADRFVYVWDTTSR 298 (338)
T ss_pred CCccccccccceEEEeecccc
Confidence 999999999999999976654
No 54
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.4e-33 Score=245.14 Aligned_cols=249 Identities=25% Similarity=0.485 Sum_probs=216.9
Q ss_pred hhhhhhcccCcEEEEEEcCCCCeEEEEecCCeEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEecCCCeEEEEEc
Q 047355 9 IEKEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDY 88 (312)
Q Consensus 9 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~ 88 (312)
+..+|.+|+++|..++|||+++..++|+.|-+|++|++..++++.++.+|...|+++.|++.-.||+++|.|.+|++|++
T Consensus 43 li~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNw 122 (1202)
T KOG0292|consen 43 LIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNW 122 (1202)
T ss_pred HHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEec
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCceeeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCc----------------------------eeeeEe
Q 047355 89 NTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNW----------------------------ECTQTF 140 (312)
Q Consensus 89 ~~~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~----------------------------~~~~~~ 140 (312)
.+.+++..+.+|...|.|..|||....++++|-|.+||+||+..-. -..+.+
T Consensus 123 qsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VL 202 (1202)
T KOG0292|consen 123 QSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVL 202 (1202)
T ss_pred cCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeee
Confidence 9999999999999999999999999999999999999999974210 012346
Q ss_pred cCCccceEEEEeCCCCCCEEEEEeCCCeEEEEEcCCCcc--eeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeC
Q 047355 141 EGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAA--KFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDY 218 (312)
Q Consensus 141 ~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~ 218 (312)
++|..-|.-.+|+|. ..++++|+.|..|++|-+...+. +-+..+|...|.++-| .|....+++.|+|+.|+|||+
T Consensus 203 EGHDRGVNwaAfhpT-lpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlf--hp~q~lIlSnsEDksirVwDm 279 (1202)
T KOG0292|consen 203 EGHDRGVNWAAFHPT-LPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLF--HPHQDLILSNSEDKSIRVWDM 279 (1202)
T ss_pred cccccccceEEecCC-cceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEe--cCccceeEecCCCccEEEEec
Confidence 889999999999985 57999999999999999875542 3345689999998865 566778999999999999999
Q ss_pred CCCeEEEEecccccCeEEEEEeCCCcEEEEEeCCCcEEEEeCC
Q 047355 219 ETKTCVQILEGHTNNVTAVCFHPELRIIITASEDGTILIWNAT 261 (312)
Q Consensus 219 ~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~s~dg~v~iwd~~ 261 (312)
...+.+++++-..+..+.++-+|...++|.|- |+-+.+|.++
T Consensus 280 ~kRt~v~tfrrendRFW~laahP~lNLfAAgH-DsGm~VFkle 321 (1202)
T KOG0292|consen 280 TKRTSVQTFRRENDRFWILAAHPELNLFAAGH-DSGMIVFKLE 321 (1202)
T ss_pred ccccceeeeeccCCeEEEEEecCCcceeeeec-CCceEEEEEc
Confidence 99999999986778899999999988776665 4444556554
No 55
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=3.2e-35 Score=234.30 Aligned_cols=228 Identities=25% Similarity=0.443 Sum_probs=203.6
Q ss_pred CceeEEEEeeCCcEEEEecCCCeEEEEEccCceeeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeE
Q 047355 60 SPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQT 139 (312)
Q Consensus 60 ~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~ 139 (312)
..|.++.+. ++.+++|..|++|++||.++..+.+.+.+|++.|.|+.+. .+.+++||.|.+|++||++++ +++.+
T Consensus 198 kgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tg-e~l~t 272 (499)
T KOG0281|consen 198 KGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTG-EPLNT 272 (499)
T ss_pred CceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCC-chhhH
Confidence 456666554 5679999999999999999999999999999999999875 568999999999999999987 67788
Q ss_pred ecCCccceEEEEeCCCCCCEEEEEeCCCeEEEEEcCCCcc---eeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEE
Q 047355 140 FEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAA---KFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVW 216 (312)
Q Consensus 140 ~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vw 216 (312)
+-.|...|..+.|+. ++++++|.|.++.+||+.+... ...+.+|..+|+.++| +.+++++++.|.+|++|
T Consensus 273 lihHceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdf----d~kyIVsASgDRTikvW 345 (499)
T KOG0281|consen 273 LIHHCEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF----DDKYIVSASGDRTIKVW 345 (499)
T ss_pred HhhhcceeEEEEEeC---CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecc----ccceEEEecCCceEEEE
Confidence 889999999999973 6899999999999999987543 3456799999999886 45699999999999999
Q ss_pred eCCCCeEEEEecccccCeEEEEEeCCCcEEEEEeCCCcEEEEeCCCcceeeecccCccceEEEEEecCCCeEEEEecCCe
Q 047355 217 DYETKTCVQILEGHTNNVTAVCFHPELRIIITASEDGTILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGCDNGT 296 (312)
Q Consensus 217 d~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~ 296 (312)
++.+.+++.++.+|...|-|+.+ .++++++||+|.+||+||+..++.+..+++|.+-|.++.| |.+.|++|+=||+
T Consensus 346 ~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF--d~krIVSGaYDGk 421 (499)
T KOG0281|consen 346 STSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGK 421 (499)
T ss_pred eccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheee--cCceeeeccccce
Confidence 99999999999999999998887 5689999999999999999999999999999999999998 6779999999999
Q ss_pred EEEEecc
Q 047355 297 LIVKIGN 303 (312)
Q Consensus 297 i~v~~~~ 303 (312)
|+||-.+
T Consensus 422 ikvWdl~ 428 (499)
T KOG0281|consen 422 IKVWDLQ 428 (499)
T ss_pred EEEEecc
Confidence 9999765
No 56
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.3e-34 Score=239.32 Aligned_cols=251 Identities=21% Similarity=0.319 Sum_probs=217.6
Q ss_pred hhhhhhhhcccCcEEEEEEcCCCCeEEEEecCCeEEEEeccCCceeeeEEecCCceeEEEEeeCC-cEEEEecCCCeEEE
Q 047355 7 LQIEKEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVARE-HWIVCGSDDKFIRV 85 (312)
Q Consensus 7 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~g~~dg~i~i 85 (312)
-.+.+.|.+|..+|.+++|+++|..+++++.|+.|++||.+++++...+... ....++.|.|++ +.+++|+.|+.|+.
T Consensus 248 ~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~-~~~~cvkf~pd~~n~fl~G~sd~ki~~ 326 (503)
T KOG0282|consen 248 RRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLD-KVPTCVKFHPDNQNIFLVGGSDKKIRQ 326 (503)
T ss_pred cceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecC-CCceeeecCCCCCcEEEEecCCCcEEE
Confidence 3467889999999999999999999999999999999999999988777644 367889999998 78889999999999
Q ss_pred EEccCceeeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeC
Q 047355 86 FDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASL 165 (312)
Q Consensus 86 wd~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~ 165 (312)
||+++++.++++..|-+.|.++.|-+.++.+++.++|+++++|+.+...........+...+-++..+|. ...++.-+.
T Consensus 327 wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~-~~~~~aQs~ 405 (503)
T KOG0282|consen 327 WDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPN-GKWFAAQSM 405 (503)
T ss_pred EeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCC-CCeehhhcc
Confidence 9999999999999999999999999999999999999999999987653333333333344556677774 579999999
Q ss_pred CCeEEEEEcCCC---cceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEecccccCeEEEEEeCC
Q 047355 166 DGTIQIWNMDSS---AAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPE 242 (312)
Q Consensus 166 dg~v~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~i~~l~~~~~ 242 (312)
|..+.++.+... .....+.+|..+-..+.+.++|||.+|++|..||.+.+||..+.+.+..+++|.+++..+.|+|.
T Consensus 406 dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~ 485 (503)
T KOG0282|consen 406 DNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPV 485 (503)
T ss_pred CceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCC
Confidence 999999987543 33456788887767777778999999999999999999999999999999999999999999995
Q ss_pred -CcEEEEEeCCCcEEEEe
Q 047355 243 -LRIIITASEDGTILIWN 259 (312)
Q Consensus 243 -~~~l~s~s~dg~v~iwd 259 (312)
...+||++.||.|++|+
T Consensus 486 e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 486 EPSKVATCGWDGLIKIWD 503 (503)
T ss_pred CcceeEecccCceeEecC
Confidence 46799999999999996
No 57
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.8e-34 Score=230.89 Aligned_cols=284 Identities=17% Similarity=0.290 Sum_probs=233.5
Q ss_pred hhhcccCcEEEEEEcCCC-CeEEEEecCCeEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEecCCCeEEEEEccC
Q 047355 12 EFIQKSDRVKSVDFHPTQ-PWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNT 90 (312)
Q Consensus 12 ~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~ 90 (312)
.+.+|.+.|.+++=+|.. ..+++|+.||.|+|||+....+...+..|.+.|..+.+.. ..+++++.|.+|+.|-++.
T Consensus 61 ~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~ 138 (433)
T KOG0268|consen 61 SLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG 138 (433)
T ss_pred hccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccC
Confidence 356789999999999987 7899999999999999999999999999999999999887 6788999999999998775
Q ss_pred ceeeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeCCCeEE
Q 047355 91 MASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQ 170 (312)
Q Consensus 91 ~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~ 170 (312)
. ..+.+-+ ...+..+.-+..+..++|+|.+ |.|||.+.. .+++.+.-....+.++.|+|.....|++|..|++|.
T Consensus 139 ~-p~~tilg-~s~~~gIdh~~~~~~FaTcGe~--i~IWD~~R~-~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIv 213 (433)
T KOG0268|consen 139 P-PLHTILG-KSVYLGIDHHRKNSVFATCGEQ--IDIWDEQRD-NPVSSMSWGADSISSVKFNPVETSILASCASDRSIV 213 (433)
T ss_pred C-cceeeec-cccccccccccccccccccCce--eeecccccC-CccceeecCCCceeEEecCCCcchheeeeccCCceE
Confidence 3 4444433 3446677777777888888854 899998755 556677777788899999999889999999999999
Q ss_pred EEEcCCCcceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCC-eEEEEecccccCeEEEEEeCCCcEEEEE
Q 047355 171 IWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETK-TCVQILEGHTNNVTAVCFHPELRIIITA 249 (312)
Q Consensus 171 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~-~~~~~~~~h~~~i~~l~~~~~~~~l~s~ 249 (312)
+||+++..++..+.. ....+.++| +|...-+++|++|..++.||++.. .++..+.+|.+.|..++|+|.|+.+++|
T Consensus 214 LyD~R~~~Pl~KVi~-~mRTN~Isw--nPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efvsg 290 (433)
T KOG0268|consen 214 LYDLRQASPLKKVIL-TMRTNTICW--NPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSG 290 (433)
T ss_pred EEecccCCccceeee-eccccceec--CccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccc
Confidence 999999888765532 233456665 556777899999999999999864 5678889999999999999999999999
Q ss_pred eCCCcEEEEeCCCcceeeeccc-CccceEEEEEecCCCeEEEEecCCeEEEEeccCC
Q 047355 250 SEDGTILIWNATTFRLQNTLSS-GLERVWSIGYKKGSNQVAFGCDNGTLIVKIGNSS 305 (312)
Q Consensus 250 s~dg~v~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~g~i~v~~~~~~ 305 (312)
|.|.+||||....+.-.-..-. --..|.+|.|+.|.+++++||+|+-|++|-.+-+
T Consensus 291 syDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~As 347 (433)
T KOG0268|consen 291 SYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKAS 347 (433)
T ss_pred cccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchh
Confidence 9999999999875422111000 0135899999999999999999999999988744
No 58
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.8e-34 Score=231.47 Aligned_cols=252 Identities=20% Similarity=0.381 Sum_probs=210.5
Q ss_pred hhhhhhhhcccCcEEEEEEcCCCCeEEEEecCCeEEEEeccCCceeeeEEec-CCceeEEEEeeCCcEEEEecCCCeEEE
Q 047355 7 LQIEKEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVT-DSPVRTAKFVAREHWIVCGSDDKFIRV 85 (312)
Q Consensus 7 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~g~~dg~i~i 85 (312)
+.+.+++.+|..+|..+.|+||.++|++|+.|..+++||.+++.....+... ...+.+++|.||+..+++|+.|+++..
T Consensus 259 ~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~ 338 (519)
T KOG0293|consen 259 FKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIM 338 (519)
T ss_pred eeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEE
Confidence 5567789999999999999999999999999999999999998877666543 567889999999999999999999999
Q ss_pred EEccCceeeeeeccc-ccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEe
Q 047355 86 FDYNTMASVKEFEAH-EDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASAS 164 (312)
Q Consensus 86 wd~~~~~~~~~~~~h-~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s 164 (312)
||++... ....++- ...|.++++.++|+++++...|..+++++....... .+-....++.+...+. ++.++++.-
T Consensus 339 wdlDgn~-~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr--~lise~~~its~~iS~-d~k~~LvnL 414 (519)
T KOG0293|consen 339 WDLDGNI-LGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDR--GLISEEQPITSFSISK-DGKLALVNL 414 (519)
T ss_pred ecCCcch-hhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhh--ccccccCceeEEEEcC-CCcEEEEEc
Confidence 9998643 3344433 356999999999999999999999999997654221 1223345677777775 567888888
Q ss_pred CCCeEEEEEcCCCcceeeecccccceeEEEEEE-cCCceEEEEEeCCCeEEEEeCCCCeEEEEecccccCeEEEEEeC-C
Q 047355 165 LDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFI-TSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHP-E 242 (312)
Q Consensus 165 ~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~i~~l~~~~-~ 242 (312)
.+..+++||+.....+..+.+|+.+-..+.-++ ..+..++++||+|+.|++|+-.+++++..+.||...|++++|+| +
T Consensus 415 ~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~ 494 (519)
T KOG0293|consen 415 QDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPAD 494 (519)
T ss_pred ccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCC
Confidence 899999999998888888889987755554333 34558999999999999999999999999999999999999999 5
Q ss_pred CcEEEEEeCCCcEEEEeCCC
Q 047355 243 LRIIITASEDGTILIWNATT 262 (312)
Q Consensus 243 ~~~l~s~s~dg~v~iwd~~~ 262 (312)
..++|++|.||+||||....
T Consensus 495 p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 495 PEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred HHHhhccCCCCeEEEecCCc
Confidence 67899999999999998764
No 59
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=4.8e-32 Score=225.75 Aligned_cols=245 Identities=31% Similarity=0.577 Sum_probs=216.9
Q ss_pred hhhhcccCcEEEEEEcCCCCeEEEEecCCeEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEecCCCeEEEEEccC
Q 047355 11 KEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNT 90 (312)
Q Consensus 11 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~ 90 (312)
..+..|...+..+.|+|+++++++++.||.|++|++...+....+..+...+.++.|.+++.++++++.|+.+++||+.+
T Consensus 45 ~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 124 (289)
T cd00200 45 RTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVET 124 (289)
T ss_pred EEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCC
Confidence 34556778899999999999999999999999999998777777888888899999999988888888899999999998
Q ss_pred ceeeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeCCCeEE
Q 047355 91 MASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQ 170 (312)
Q Consensus 91 ~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~ 170 (312)
.+....+..|...|.++.++|++.++++++.|+.+++||++.. .....+..|...+..+.|+|. ...+++++.|+.++
T Consensus 125 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~~~~i~ 202 (289)
T cd00200 125 GKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTG-KCVATLTGHTGEVNSVAFSPD-GEKLLSSSSDGTIK 202 (289)
T ss_pred cEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEcccc-ccceeEecCccccceEEECCC-cCEEEEecCCCcEE
Confidence 8888888899999999999999888888888999999998754 445667788888999999985 46788888899999
Q ss_pred EEEcCCCcceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEecccccCeEEEEEeCCCcEEEEEe
Q 047355 171 IWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITAS 250 (312)
Q Consensus 171 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~s 250 (312)
+||++..+....+..|...+.++.+ .+++.++++++.||.|++||+.+++....+..|...|.+++|+|++++|++++
T Consensus 203 i~d~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 280 (289)
T cd00200 203 LWDLSTGKCLGTLRGHENGVNSVAF--SPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGS 280 (289)
T ss_pred EEECCCCceecchhhcCCceEEEEE--cCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEec
Confidence 9999988887777788888888875 56678888888899999999998888888889999999999999999999999
Q ss_pred CCCcEEEEe
Q 047355 251 EDGTILIWN 259 (312)
Q Consensus 251 ~dg~v~iwd 259 (312)
.|+.+++|+
T Consensus 281 ~d~~i~iw~ 289 (289)
T cd00200 281 ADGTIRIWD 289 (289)
T ss_pred CCCeEEecC
Confidence 999999996
No 60
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1e-32 Score=220.98 Aligned_cols=248 Identities=21% Similarity=0.327 Sum_probs=207.2
Q ss_pred hhhhhhcccCcEEEEEEcCCCCeEEEEecCCeEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEecCCCeEEEEEc
Q 047355 9 IEKEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDY 88 (312)
Q Consensus 9 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~ 88 (312)
+..++.+|++.|.++.|+.||.+||+|..+|.|+||...++.....+...-..+.=+.|+|....|++|+.||.+..|.+
T Consensus 98 ~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~i 177 (399)
T KOG0296|consen 98 FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQI 177 (399)
T ss_pred ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEEC
Confidence 34567899999999999999999999999999999999988877777655556777889999999999999999999999
Q ss_pred cCceeeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEec---------------------------
Q 047355 89 NTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFE--------------------------- 141 (312)
Q Consensus 89 ~~~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~--------------------------- 141 (312)
.+....+.+.+|..++++=.|.|+|+.++++..||+|++||..+.... ....
T Consensus 178 p~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~-~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~ 256 (399)
T KOG0296|consen 178 PSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPL-HKITQAEGLELPCISLNLAGSTLTKGNSEGV 256 (399)
T ss_pred CCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCcee-EEecccccCcCCccccccccceeEeccCCcc
Confidence 998888999999999999999999999999999999999997654221 1111
Q ss_pred ------------------------CCccceEEEEeCCC--CCCEEEEEeCCCeEEEEEcCCCcceeeecccccceeEEEE
Q 047355 142 ------------------------GHSHYVMQSAFNPK--DLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDY 195 (312)
Q Consensus 142 ------------------------~~~~~v~~~~~~~~--~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~ 195 (312)
.+...+.++.+.|. ...+++.|+.||+|-|||+.....++.. .|+.+|..+.|
T Consensus 257 ~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c-~he~~V~~l~w 335 (399)
T KOG0296|consen 257 ACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHIC-EHEDGVTKLKW 335 (399)
T ss_pred EEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheec-cCCCceEEEEE
Confidence 00111111122221 2356888999999999999887766554 67788888887
Q ss_pred EEcCCceEEEEEeCCCeEEEEeCCCCeEEEEecccccCeEEEEEeCCCcEEEEEeCCCcEEEEeCC
Q 047355 196 FITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITASEDGTILIWNAT 261 (312)
Q Consensus 196 ~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~s~dg~v~iwd~~ 261 (312)
.. -.+|++++.+|.|+.||.+++++...+.+|...|.+++++|++++++|+|.|++.+||+.+
T Consensus 336 ~~---t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 336 LN---TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred cC---cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 54 3579999999999999999999999999999999999999999999999999999999875
No 61
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-32 Score=234.70 Aligned_cols=276 Identities=20% Similarity=0.329 Sum_probs=238.5
Q ss_pred EEEEEcCCCCeEEEEecCCeEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEecCCCeEEEEEccCceeeeeecc-
Q 047355 21 KSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEA- 99 (312)
Q Consensus 21 ~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~- 99 (312)
+=+.|+. .+ +++.+....|.+|+..+.........+...|+++.|.++|.+|+.|..+|.|.+||..+.+.+..+.+
T Consensus 181 nlldWss-~n-~laValg~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~ 258 (484)
T KOG0305|consen 181 NLLDWSS-AN-VLAVALGQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGS 258 (484)
T ss_pred hHhhccc-CC-eEEEEecceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCC
Confidence 4456662 22 44455667899999888776655555578899999999999999999999999999999888888888
Q ss_pred cccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeCCCeEEEEEcCCCcc
Q 047355 100 HEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAA 179 (312)
Q Consensus 100 h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~ 179 (312)
|...|.+++|. ...+.+|+.|+.|..+|++........+.+|...|..+.|++ +..++++|+.|+.+.|||.....+
T Consensus 259 h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~-d~~~lASGgnDN~~~Iwd~~~~~p 335 (484)
T KOG0305|consen 259 HASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSP-DGNQLASGGNDNVVFIWDGLSPEP 335 (484)
T ss_pred cCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECC-CCCeeccCCCccceEeccCCCccc
Confidence 99999999998 566889999999999999876554445888999999999998 568999999999999999998899
Q ss_pred eeeecccccceeEEEEEEcCCceEEEEEe--CCCeEEEEeCCCCeEEEEecccccCeEEEEEeCCCcEEEEEe--CCCcE
Q 047355 180 KFTLDAHEKGINCIDYFITSDKVYLITGS--DDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITAS--EDGTI 255 (312)
Q Consensus 180 ~~~~~~~~~~v~~~~~~~~~~~~~l~sg~--~dg~i~vwd~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~s--~dg~v 255 (312)
.+.+..|..+|..++|++...+ .||+|+ .|+.|++||..+++.+..+. -.+.|.+|.|++..+.|+++- .++.|
T Consensus 336 ~~~~~~H~aAVKA~awcP~q~~-lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i 413 (484)
T KOG0305|consen 336 KFTFTEHTAAVKALAWCPWQSG-LLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQI 413 (484)
T ss_pred cEEEeccceeeeEeeeCCCccC-ceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcE
Confidence 9999999999999999776544 677754 69999999999999988776 467899999999887776654 35689
Q ss_pred EEEeCCCcceeeecccCccceEEEEEecCCCeEEEEecCCeEEEEecc
Q 047355 256 LIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGCDNGTLIVKIGN 303 (312)
Q Consensus 256 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~v~~~~ 303 (312)
.||++++.+....+.+|..+|..++++|||..+++|+.|.++++|---
T Consensus 414 ~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f 461 (484)
T KOG0305|consen 414 TLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLF 461 (484)
T ss_pred EEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEecccc
Confidence 999999999999999999999999999999999999999999998643
No 62
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=100.00 E-value=4.8e-33 Score=231.86 Aligned_cols=289 Identities=22% Similarity=0.349 Sum_probs=232.9
Q ss_pred hhhhcccCcEEEEEEcCCCCeEEEEecCCeEEEEeccCCcee-eeEE----ecCCceeEEEEeeCCcEEEEecCCCeEEE
Q 047355 11 KEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTE-KSVK----VTDSPVRTAKFVAREHWIVCGSDDKFIRV 85 (312)
Q Consensus 11 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~-~~~~----~~~~~v~~~~~~~~~~~l~~g~~dg~i~i 85 (312)
-++.+|...|.++++.|.|.++++|+.|-+|++||++..... +.|+ .....|+++.|++.+..|++.+.....++
T Consensus 161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl 240 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKL 240 (641)
T ss_pred EeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeE
Confidence 346778899999999999999999999999999999754221 1222 22357999999999999999999999999
Q ss_pred EEccCceeee------------eecccccceeEEEEecCCC-EEEEEeCCCcEEEEeCCCCceeeeEec-----CCccce
Q 047355 86 FDYNTMASVK------------EFEAHEDYIRSLAVHPTFP-FVLTASDDKLIKLWDWEKNWECTQTFE-----GHSHYV 147 (312)
Q Consensus 86 wd~~~~~~~~------------~~~~h~~~i~~~~~~~~~~-~l~t~s~d~~v~iwd~~~~~~~~~~~~-----~~~~~v 147 (312)
+|-+..+... ..++|...+++.+|+|..+ .++|++.||++|+||++......+.+. +..-.+
T Consensus 241 ~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~ 320 (641)
T KOG0772|consen 241 LDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPV 320 (641)
T ss_pred EccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCc
Confidence 9977654332 3468999999999999764 578999999999999987655444442 334467
Q ss_pred EEEEeCCCCCCEEEEEeCCCeEEEEEcCCCcc---eeeeccccc--ceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCC-
Q 047355 148 MQSAFNPKDLNTFASASLDGTIQIWNMDSSAA---KFTLDAHEK--GINCIDYFITSDKVYLITGSDDFTVKVWDYETK- 221 (312)
Q Consensus 148 ~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~---~~~~~~~~~--~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~- 221 (312)
..+.|+| ++.++++|..||+|++|+..+... ...-.+|.. .++|+.| +.+|++|++-+.|+++++||+++.
T Consensus 321 tsC~~nr-dg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~F--S~dg~~LlSRg~D~tLKvWDLrq~k 397 (641)
T KOG0772|consen 321 TSCAWNR-DGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISF--SYDGNYLLSRGFDDTLKVWDLRQFK 397 (641)
T ss_pred eeeecCC-CcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEe--ccccchhhhccCCCceeeeeccccc
Confidence 8889998 457899999999999999865322 234467877 7888874 789999999999999999999874
Q ss_pred eEEEEecccc--cCeEEEEEeCCCcEEEEEeC------CCcEEEEeCCCcceeeecccCccceEEEEEecCCCeEEEEec
Q 047355 222 TCVQILEGHT--NNVTAVCFHPELRIIITASE------DGTILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGCD 293 (312)
Q Consensus 222 ~~~~~~~~h~--~~i~~l~~~~~~~~l~s~s~------dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 293 (312)
+++....+-. -+-+.++|+|+.++|++|.+ .|.+.+||-.++....++......|..+.|+|..|+|.+|+.
T Consensus 398 kpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsg 477 (641)
T KOG0772|consen 398 KPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSG 477 (641)
T ss_pred cchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecC
Confidence 4555444332 24678999999999999975 478999999999999998888889999999999999999999
Q ss_pred CCeEEEEec
Q 047355 294 NGTLIVKIG 302 (312)
Q Consensus 294 ~g~i~v~~~ 302 (312)
||+++|-..
T Consensus 478 dG~~~vyYd 486 (641)
T KOG0772|consen 478 DGTAHVYYD 486 (641)
T ss_pred CCceEEEEC
Confidence 999887543
No 63
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=6.1e-32 Score=255.41 Aligned_cols=261 Identities=16% Similarity=0.303 Sum_probs=215.9
Q ss_pred CCeEEEEeccCCceeeeE-----EecCCceeEEEEeeCCcEEEEecCCCeEEEEEccCce--------eeeeecccccce
Q 047355 38 SGTVCIWNYHSQTTEKSV-----KVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMA--------SVKEFEAHEDYI 104 (312)
Q Consensus 38 dg~v~iw~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~--------~~~~~~~h~~~i 104 (312)
+|-+++|+....+....+ ..|...|.+++|+++++++++|+.|+.|++|+..+.. ....+. +...|
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v 535 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKL 535 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCce
Confidence 677888887755443332 3367789999999999999999999999999975421 112222 34678
Q ss_pred eEEEEecC-CCEEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeCCCeEEEEEcCCCcceeee
Q 047355 105 RSLAVHPT-FPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTL 183 (312)
Q Consensus 105 ~~~~~~~~-~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~ 183 (312)
.+++|+|. +.+|++++.||+|++||+.+. .....+.+|...|..+.|+|.++.+|++|+.|++|++||+++......+
T Consensus 536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~-~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~ 614 (793)
T PLN00181 536 SGICWNSYIKSQVASSNFEGVVQVWDVARS-QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTI 614 (793)
T ss_pred eeEEeccCCCCEEEEEeCCCeEEEEECCCC-eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEE
Confidence 99999874 678999999999999998765 5566788999999999999877789999999999999999988777777
Q ss_pred cccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCe-EEEEecccccCeEEEEEeCCCcEEEEEeCCCcEEEEeCCC
Q 047355 184 DAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKT-CVQILEGHTNNVTAVCFHPELRIIITASEDGTILIWNATT 262 (312)
Q Consensus 184 ~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~-~~~~~~~h~~~i~~l~~~~~~~~l~s~s~dg~v~iwd~~~ 262 (312)
..+ ..+.++.+ ..+++.++++|+.||.|++||+++.+ .+..+.+|...|+++.|. ++.+|++++.|++|++||+..
T Consensus 615 ~~~-~~v~~v~~-~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~ 691 (793)
T PLN00181 615 KTK-ANICCVQF-PSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSM 691 (793)
T ss_pred ecC-CCeEEEEE-eCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCC
Confidence 654 46777765 35678899999999999999998765 567788999999999997 678899999999999999874
Q ss_pred ------cceeeecccCccceEEEEEecCCCeEEEEecCCeEEEEecc
Q 047355 263 ------FRLQNTLSSGLERVWSIGYKKGSNQVAFGCDNGTLIVKIGN 303 (312)
Q Consensus 263 ------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~v~~~~ 303 (312)
.+.+.++.+|...+..++|+|++++|++|+.||++.||-..
T Consensus 692 ~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~ 738 (793)
T PLN00181 692 SISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKA 738 (793)
T ss_pred CccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECC
Confidence 35667888888889999999999999999999999998643
No 64
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-33 Score=215.90 Aligned_cols=243 Identities=20% Similarity=0.356 Sum_probs=211.2
Q ss_pred ccCcEEEEEEcCC-CCeEEEEecCCeEEEEecc-CCceeeeEEecCCceeEEEEeeC-CcEEEEecCCCeEEEEEccCce
Q 047355 16 KSDRVKSVDFHPT-QPWVLASLYSGTVCIWNYH-SQTTEKSVKVTDSPVRTAKFVAR-EHWIVCGSDDKFIRVFDYNTMA 92 (312)
Q Consensus 16 ~~~~i~~~~~~~~-~~~l~~~~~dg~v~iw~~~-~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~g~~dg~i~iwd~~~~~ 92 (312)
-.|.+..++|++. ...+++++.||++++||.. ...++..++.|...|.++.+++. ...+++++.|++|++|+.....
T Consensus 59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~ 138 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN 138 (311)
T ss_pred cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc
Confidence 4578999999986 4688899999999999964 45677888999999999999874 5567788999999999999989
Q ss_pred eeeeecccccceeEEEEecC-CCEEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeCCCeEEE
Q 047355 93 SVKEFEAHEDYIRSLAVHPT-FPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQI 171 (312)
Q Consensus 93 ~~~~~~~h~~~i~~~~~~~~-~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~i 171 (312)
.++++.+|...|....|+|. ..+++++|.|+++++||++...+.. .+..|...+.+..|+..+.+.+++|+.|+.||.
T Consensus 139 Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~-~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~ 217 (311)
T KOG0277|consen 139 SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFM-SIEAHNSEILCCDWSKYNHNVLATGGVDNLVRG 217 (311)
T ss_pred ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCcee-EEEeccceeEeecccccCCcEEEecCCCceEEE
Confidence 99999999999999999985 5678899999999999988664443 488899999999999888999999999999999
Q ss_pred EEcCCC-cceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCC-CCeEEEEecccccCeEEEEEeC-CCcEEEE
Q 047355 172 WNMDSS-AAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYE-TKTCVQILEGHTNNVTAVCFHP-ELRIIIT 248 (312)
Q Consensus 172 wd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~-~~~~~~~~~~h~~~i~~l~~~~-~~~~l~s 248 (312)
||+++. .++..+.+|.-+|..+.+.+.. ...|++++.|-++++||.+ ...++.+..-|.+-+..+.|++ ++.++|+
T Consensus 218 wDir~~r~pl~eL~gh~~AVRkvk~Sph~-~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs 296 (311)
T KOG0277|consen 218 WDIRNLRTPLFELNGHGLAVRKVKFSPHH-ASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVAS 296 (311)
T ss_pred EehhhccccceeecCCceEEEEEecCcch-hhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeee
Confidence 999985 4567789999999999986554 4579999999999999987 4455667778999999999997 6789999
Q ss_pred EeCCCcEEEEeC
Q 047355 249 ASEDGTILIWNA 260 (312)
Q Consensus 249 ~s~dg~v~iwd~ 260 (312)
++.|..++||+.
T Consensus 297 ~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 297 TGWDELLYVWNP 308 (311)
T ss_pred cccccceeeecc
Confidence 999999999984
No 65
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=7.3e-32 Score=211.85 Aligned_cols=268 Identities=21% Similarity=0.311 Sum_probs=215.2
Q ss_pred ccCcEEEEEEcCCCCeEEEEecCCeEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEecCCCeEEEEEccCceeee
Q 047355 16 KSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVK 95 (312)
Q Consensus 16 ~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~ 95 (312)
+.+.|.++.|+|.+..|+++++||++++|+.........+ .+..++..++|.+ ...+++|+.||.|+.+|+.++.. .
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~-~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~-~ 88 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF-KHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNE-D 88 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe-ecCCceeeeeccC-CceEEEeccCceEEEEEecCCcc-e
Confidence 4789999999999999999999999999999877555444 4677999999987 56799999999999999998654 4
Q ss_pred eecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeCCCeEEEEEcC
Q 047355 96 EFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMD 175 (312)
Q Consensus 96 ~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~ 175 (312)
.+..|..+|.++...+....+++||+|++|++||.+.. .....+. ....|.++... ++.|++|+.|..|.+||++
T Consensus 89 ~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~-~~~~~~d-~~kkVy~~~v~---g~~LvVg~~~r~v~iyDLR 163 (323)
T KOG1036|consen 89 QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNK-VVVGTFD-QGKKVYCMDVS---GNRLVVGTSDRKVLIYDLR 163 (323)
T ss_pred eeccCCCceEEEEeeccCCeEEEcccCccEEEEecccc-ccccccc-cCceEEEEecc---CCEEEEeecCceEEEEEcc
Confidence 67789999999999998889999999999999998752 2222222 23366666643 4789999999999999999
Q ss_pred CCcceeeec--ccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCC----eEEEEeccccc---------CeEEEEEe
Q 047355 176 SSAAKFTLD--AHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETK----TCVQILEGHTN---------NVTAVCFH 240 (312)
Q Consensus 176 ~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~----~~~~~~~~h~~---------~i~~l~~~ 240 (312)
+....++.. .-+-.+.|+++.+ ++.-+++++-||.|.+=.+... +.-..++.|.. +|++++|+
T Consensus 164 n~~~~~q~reS~lkyqtR~v~~~p--n~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fh 241 (323)
T KOG1036|consen 164 NLDEPFQRRESSLKYQTRCVALVP--NGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFH 241 (323)
T ss_pred cccchhhhccccceeEEEEEEEec--CCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEec
Confidence 876554322 2234577888765 4445788999999887655443 33345666643 69999999
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCcceeeecccCccceEEEEEecCCCeEEEEec
Q 047355 241 PELRIIITASEDGTILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGCD 293 (312)
Q Consensus 241 ~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 293 (312)
|--+.||||+.||.|.+||..+.|.+..+..-...|-+++|+-||..||.++.
T Consensus 242 p~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 242 PIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred cccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 99889999999999999999998888888777777999999999999999876
No 66
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=2.5e-32 Score=241.53 Aligned_cols=276 Identities=24% Similarity=0.414 Sum_probs=243.8
Q ss_pred ccCcEEEEEEcCCCCeEEEEecCCeEEEEeccCCceeee-EEecCCceeEEEEeeCCcEEEEecCCCeEEEEEccCceee
Q 047355 16 KSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKS-VKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASV 94 (312)
Q Consensus 16 ~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~ 94 (312)
+...+.+..|+ ..++++++.|++|++|+......+.. +.+|.+.|.+++|...+..+++|+.|.++++||..++++.
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~ 284 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECT 284 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEE
Confidence 45678888887 66899999999999999988877777 9999999999999988889999999999999999999999
Q ss_pred eeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeCCCeEEEEEc
Q 047355 95 KEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNM 174 (312)
Q Consensus 95 ~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~ 174 (312)
..+.+|...|.++...+ ..+++|+.|.+|++|++.++ ..+..+.+|...|..+..+ ...+++|+.|++|++||.
T Consensus 285 ~~l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~-~~l~l~~~h~~~V~~v~~~---~~~lvsgs~d~~v~VW~~ 358 (537)
T KOG0274|consen 285 HSLQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNG-ACLNLLRGHTGPVNCVQLD---EPLLVSGSYDGTVKVWDP 358 (537)
T ss_pred EEecCCCceEEEEEccC--ceEeeccCCceEEEEeccCc-ceEEEeccccccEEEEEec---CCEEEEEecCceEEEEEh
Confidence 99999999999988654 45778999999999999865 6677788899999999986 479999999999999999
Q ss_pred CCCcceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCC-eEEEEecccccCeEEEEEeCCCcEEEEEeCCC
Q 047355 175 DSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETK-TCVQILEGHTNNVTAVCFHPELRIIITASEDG 253 (312)
Q Consensus 175 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~-~~~~~~~~h~~~i~~l~~~~~~~~l~s~s~dg 253 (312)
.+.++...+.+|...|.++.+ ... ..+++|+.|+.|++||+++. +++.++.+|.+-+..+.+ .++.|++++.|+
T Consensus 359 ~~~~cl~sl~gH~~~V~sl~~--~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~ 433 (537)
T KOG0274|consen 359 RTGKCLKSLSGHTGRVYSLIV--DSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADG 433 (537)
T ss_pred hhceeeeeecCCcceEEEEEe--cCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEeccccc
Confidence 999999999999999999853 222 78999999999999999999 999999999998876665 447899999999
Q ss_pred cEEEEeCCCcceeeeccc-CccceEEEEEecCCCeEEEEecCCeEEEEeccCCC
Q 047355 254 TILIWNATTFRLQNTLSS-GLERVWSIGYKKGSNQVAFGCDNGTLIVKIGNSSG 306 (312)
Q Consensus 254 ~v~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~g~i~v~~~~~~~ 306 (312)
+|++||..+++...++.+ +...+..+++. -..++.++.+|++.+|-.++-.
T Consensus 434 ~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~ 485 (537)
T KOG0274|consen 434 TIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGT 485 (537)
T ss_pred cEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCc
Confidence 999999999999999988 67888888776 5688899999999999766543
No 67
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=4.8e-32 Score=239.73 Aligned_cols=282 Identities=22% Similarity=0.396 Sum_probs=234.0
Q ss_pred hhhcccCcEEEEEEcCCCCeEEEEecCCeEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEecCCCeEEEEEccCc
Q 047355 12 EFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTM 91 (312)
Q Consensus 12 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~ 91 (312)
++.+|.+.|++++|..-+..|++|+.|.++++||..++.+..++..|...+..+... +-.+.+|+.|.+|++|++.++
T Consensus 244 ~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~ 321 (537)
T KOG0274|consen 244 RLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNG 321 (537)
T ss_pred eccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCc
Confidence 488999999999998878899999999999999999999999999888877665443 456788899999999999999
Q ss_pred eeeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeCCCeEEE
Q 047355 92 ASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQI 171 (312)
Q Consensus 92 ~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~i 171 (312)
..++.+.+|..+|+++..+ +.++++|+.|++|++||..+ .+++..+.+|...|..+.+.+. +.+++|+.|++|++
T Consensus 322 ~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~-~~cl~sl~gH~~~V~sl~~~~~--~~~~Sgs~D~~Ikv 396 (537)
T KOG0274|consen 322 ACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRT-GKCLKSLSGHTGRVYSLIVDSE--NRLLSGSLDTTIKV 396 (537)
T ss_pred ceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhh-ceeeeeecCCcceEEEEEecCc--ceEEeeeeccceEe
Confidence 9999999999999999987 78899999999999999985 4888999999999999988753 78999999999999
Q ss_pred EEcCCC-cceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEecc-cccCeEEEEEeCCCcEEEEE
Q 047355 172 WNMDSS-AAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEG-HTNNVTAVCFHPELRIIITA 249 (312)
Q Consensus 172 wd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~-h~~~i~~l~~~~~~~~l~s~ 249 (312)
||+++. ++..++.+|..-+..+. ..+.++++++.|++|++||..++++++.+.+ |...|..+++. ...++++
T Consensus 397 Wdl~~~~~c~~tl~~h~~~v~~l~----~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s 470 (537)
T KOG0274|consen 397 WDLRTKRKCIHTLQGHTSLVSSLL----LRDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCS 470 (537)
T ss_pred ecCCchhhhhhhhcCCcccccccc----cccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEE
Confidence 999999 89999999988886554 3467899999999999999999999999998 67889988887 4679999
Q ss_pred eCCCcEEEEeCCCcceeeecccCc-cceEEEEEecCCCeEEEEecCCeEEEEeccCCCC
Q 047355 250 SEDGTILIWNATTFRLQNTLSSGL-ERVWSIGYKKGSNQVAFGCDNGTLIVKIGNSSGC 307 (312)
Q Consensus 250 s~dg~v~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~g~i~v~~~~~~~~ 307 (312)
+.||.+++||++++++...+-.+. ...+.+++... ...+....++...+.+.+.+.+
T Consensus 471 ~~~~~~~l~dl~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 528 (537)
T KOG0274|consen 471 SDDGSVKLWDLRSGTLIRTLLSTDLGATWGVAPSSP-SFSTANVEAVQSWILVCETKSA 528 (537)
T ss_pred ecCCeeEEEecccCchhhhhhhcccccccccccCCC-ccccccccccccceeccccccc
Confidence 999999999999998877663333 33444443222 1222333344444444444443
No 68
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=3.1e-31 Score=204.48 Aligned_cols=285 Identities=13% Similarity=0.218 Sum_probs=239.5
Q ss_pred hhcccCcEEEEEEcCCCCeEEEEecCCeEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEecCCCeEEEEEccCce
Q 047355 13 FIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMA 92 (312)
Q Consensus 13 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~ 92 (312)
+.+|..+++.+.|+.+|..|++++.|.++.+|--..++.+.++.+|.+.|.++....+.+.+++|+.|.++++||+++++
T Consensus 6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk 85 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGK 85 (327)
T ss_pred cccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCc
Confidence 56799999999999999999999999999999887888899999999999999999999999999999999999999999
Q ss_pred eeeeecccccceeEEEEecCCCEEEEEe-----CCCcEEEEeCCCC------ceeeeEecCCccceEEEEeCCCCCCEEE
Q 047355 93 SVKEFEAHEDYIRSLAVHPTFPFVLTAS-----DDKLIKLWDWEKN------WECTQTFEGHSHYVMQSAFNPKDLNTFA 161 (312)
Q Consensus 93 ~~~~~~~h~~~i~~~~~~~~~~~l~t~s-----~d~~v~iwd~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 161 (312)
.+..++. ..+|..+.|++++++++... ..+.|.++|++.. .++...+..+...+..+.|.|.+ ..++
T Consensus 86 ~la~~k~-~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~-~~ii 163 (327)
T KOG0643|consen 86 QLATWKT-NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLG-ETII 163 (327)
T ss_pred EEEEeec-CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccC-CEEE
Confidence 8877754 45799999999999887664 3467999998742 24466677788889999999965 7999
Q ss_pred EEeCCCeEEEEEcCCCc-ceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEecccccCeEEEEEe
Q 047355 162 SASLDGTIQIWNMDSSA-AKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFH 240 (312)
Q Consensus 162 s~s~dg~v~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~i~~l~~~ 240 (312)
+|..||.|.+||+++++ .+...+.|...++.+. ++++..++++|+.|.+-++||.++.++++++. -..+|++.+++
T Consensus 164 ~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q--~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~-te~PvN~aais 240 (327)
T KOG0643|consen 164 AGHEDGSISIYDARTGKELVDSDEEHSSKINDLQ--FSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT-TERPVNTAAIS 240 (327)
T ss_pred EecCCCcEEEEEcccCceeeechhhhcccccccc--ccCCcceEEecccCccceeeeccceeeEEEee-ecccccceecc
Confidence 99999999999999874 4555678888888776 58899999999999999999999999999988 46789999999
Q ss_pred CCCcEEEEEeCCCc--E------------EEEeCCCcceeeecccCccceEEEEEecCCCeEEEEecCCeEEEEec
Q 047355 241 PELRIIITASEDGT--I------------LIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGCDNGTLIVKIG 302 (312)
Q Consensus 241 ~~~~~l~s~s~dg~--v------------~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~v~~~ 302 (312)
|....++.|+.-.- | |+|++-..+.+...++|-+++.+|+|+|+|+..++|+.||.+++..=
T Consensus 241 P~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~F 316 (327)
T KOG0643|consen 241 PLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHF 316 (327)
T ss_pred cccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEe
Confidence 97776666654221 1 11221112345667788899999999999999999999999998643
No 69
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-31 Score=211.45 Aligned_cols=246 Identities=19% Similarity=0.354 Sum_probs=201.3
Q ss_pred hhhhhhhcccCcEEEEEEcCCCCeEEEEecCCeEEEEeccCCceeeeEEecCCceeEEEEeeCCc--EEEEecCCCeEEE
Q 047355 8 QIEKEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREH--WIVCGSDDKFIRV 85 (312)
Q Consensus 8 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~g~~dg~i~i 85 (312)
.....|..|...|.++|. +++++++|+.|.+|+|||+.++.....+-.|.+.|+++.|.+.-. +|++|++||.|.+
T Consensus 34 ~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~i 111 (362)
T KOG0294|consen 34 KPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIII 111 (362)
T ss_pred eccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEE
Confidence 334567789999999999 599999999999999999999988888889999999999998754 8999999999999
Q ss_pred EEccCceeeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeC
Q 047355 86 FDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASL 165 (312)
Q Consensus 86 wd~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~ 165 (312)
|+......++.+++|.+.|+.+++||.+++.++.+.|+.++.||+-++......- -......+.|.|. +.+|+.++.
T Consensus 112 w~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~--L~~~at~v~w~~~-Gd~F~v~~~ 188 (362)
T KOG0294|consen 112 WRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLN--LKNKATLVSWSPQ-GDHFVVSGR 188 (362)
T ss_pred EEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeec--cCCcceeeEEcCC-CCEEEEEec
Confidence 9999999999999999999999999999999999999999999986543221111 1122234789875 466776665
Q ss_pred CCeEEEEEcCCCcceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEecccccCeEEEEE--eCCC
Q 047355 166 DGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCF--HPEL 243 (312)
Q Consensus 166 dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~i~~l~~--~~~~ 243 (312)
+ .|-+|.+.+......+... ..+.|+.| .++..+++|.+|+.|.+||.....++..+.+|...|..+.+ +|++
T Consensus 189 ~-~i~i~q~d~A~v~~~i~~~-~r~l~~~~---l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~ 263 (362)
T KOG0294|consen 189 N-KIDIYQLDNASVFREIENP-KRILCATF---LDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEH 263 (362)
T ss_pred c-EEEEEecccHhHhhhhhcc-ccceeeee---cCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCc
Confidence 4 4889998765543333222 23344432 35678999999999999999999999999999999999985 5788
Q ss_pred cEEEEEeCCCcEEEEeCCCc
Q 047355 244 RIIITASEDGTILIWNATTF 263 (312)
Q Consensus 244 ~~l~s~s~dg~v~iwd~~~~ 263 (312)
.+|+|+|+||.|++||+...
T Consensus 264 ~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 264 EYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred eEEEEeccCceEEEEEcccc
Confidence 99999999999999998753
No 70
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.4e-32 Score=239.84 Aligned_cols=286 Identities=20% Similarity=0.317 Sum_probs=210.5
Q ss_pred hhhh-cccCcEEEEEEcCCCCeEEEEecCCeEEEEeccCCceeeeEEecC-----------CceeEEEEee-----CCcE
Q 047355 11 KEFI-QKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTD-----------SPVRTAKFVA-----REHW 73 (312)
Q Consensus 11 ~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~-----------~~v~~~~~~~-----~~~~ 73 (312)
.+.. .|.+.|+++-|++||++||+||+|+.|+||.+...+. ....... +.+....-.. ....
T Consensus 260 Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~-~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~ 338 (712)
T KOG0283|consen 260 QEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESER-MRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSS 338 (712)
T ss_pred eccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccch-hcccccccchhhhhhhhccccCccccccccccccccc
Confidence 3445 7899999999999999999999999999999754221 1110000 0000000000 0011
Q ss_pred EEEecCCCeEEEEEcc----CceeeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEecCCccceEE
Q 047355 74 IVCGSDDKFIRVFDYN----TMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQ 149 (312)
Q Consensus 74 l~~g~~dg~i~iwd~~----~~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~ 149 (312)
.-.+..... .+.+.. ..+++..+.+|.+.|.++.|+.+ .+|+++|.|.+||+|.+... .++..|. |..+|++
T Consensus 339 ~~~~~~s~~-~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~-~CL~~F~-HndfVTc 414 (712)
T KOG0283|consen 339 SRKGSQSPC-VLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRK-ECLKVFS-HNDFVTC 414 (712)
T ss_pred cccccCCcc-ccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCc-ceeeEEe-cCCeeEE
Confidence 112222222 222221 12467789999999999999865 58999999999999998754 6666665 9999999
Q ss_pred EEeCCCCCCEEEEEeCCCeEEEEEcCCCcceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEec-
Q 047355 150 SAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILE- 228 (312)
Q Consensus 150 ~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~- 228 (312)
++|+|.+.++|++|+.||.||||++...+...-...+ .-|++++| .|||.+.+.|+.+|..++|++...+......
T Consensus 415 VaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy--~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I 491 (712)
T KOG0283|consen 415 VAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCY--SPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHI 491 (712)
T ss_pred EEecccCCCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEe--ccCCceEEEEEeccEEEEEEccCCeEEEeeeE
Confidence 9999999999999999999999999876655444444 55777765 6789999999999999999998776654332
Q ss_pred -cc------ccCeEEEEEeCC-CcEEEEEeCCCcEEEEeCCCcceeeecccCcc--ceEEEEEecCCCeEEEEecCCeEE
Q 047355 229 -GH------TNNVTAVCFHPE-LRIIITASEDGTILIWNATTFRLQNTLSSGLE--RVWSIGYKKGSNQVAFGCDNGTLI 298 (312)
Q Consensus 229 -~h------~~~i~~l~~~~~-~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~~g~i~ 298 (312)
.| ...|+++.|.|. ...+++.+.|..|||+|..+.+++..+++... .-..-.|+.||++|+++++|..|+
T Consensus 492 ~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VY 571 (712)
T KOG0283|consen 492 RLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVY 571 (712)
T ss_pred eeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEE
Confidence 11 127999999974 44688889999999999988888888876532 234667899999999999999999
Q ss_pred EEeccC
Q 047355 299 VKIGNS 304 (312)
Q Consensus 299 v~~~~~ 304 (312)
||--++
T Consensus 572 iW~~~~ 577 (712)
T KOG0283|consen 572 IWKNDS 577 (712)
T ss_pred EEeCCC
Confidence 998643
No 71
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=100.00 E-value=7.9e-32 Score=231.68 Aligned_cols=282 Identities=20% Similarity=0.352 Sum_probs=235.4
Q ss_pred hhhhhhhhhcccCcEEEEEEcCCCCeEEEEecCCeEEEEeccCCcee--eeEEecCCceeE-EEEee-CCcEEEEecCCC
Q 047355 6 ELQIEKEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTE--KSVKVTDSPVRT-AKFVA-REHWIVCGSDDK 81 (312)
Q Consensus 6 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~--~~~~~~~~~v~~-~~~~~-~~~~l~~g~~dg 81 (312)
.+.+.+++.+|+..|..+++.+. ..+++++.||++++|+-...... ..+..+.+-+.. ++|.+ ++..|++|+.|.
T Consensus 3 ~Y~ls~~l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~ 81 (745)
T KOG0301|consen 3 QYKLSHELEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDT 81 (745)
T ss_pred cceeEEEeccCccchheeEecCC-eEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccc
Confidence 45677889999999999998644 47999999999999986544333 345555665655 77775 445699999999
Q ss_pred eEEEEEccCceeeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEE
Q 047355 82 FIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFA 161 (312)
Q Consensus 82 ~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 161 (312)
+|.+|...+..+...+++|+..|.+++...++. +++||+|.++++|-.. ++...+.+|...|+.+..-|.+ .++
T Consensus 82 ~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~---~l~~~l~gH~asVWAv~~l~e~--~~v 155 (745)
T KOG0301|consen 82 TIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG---ELVYSLQGHTASVWAVASLPEN--TYV 155 (745)
T ss_pred eEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecch---hhhcccCCcchheeeeeecCCC--cEE
Confidence 999999999999999999999999999887777 8999999999999753 4455689999999999998864 899
Q ss_pred EEeCCCeEEEEEcCCCcceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEecccccCeEEEEEeC
Q 047355 162 SASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHP 241 (312)
Q Consensus 162 s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~i~~l~~~~ 241 (312)
|||.|.+|++|.- +....++.+|...|..+++. ++ .-+++++.||.|++|++ ++.++..+.+|+.-|++++..+
T Consensus 156 TgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl--~~-~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~ 229 (745)
T KOG0301|consen 156 TGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVL--DD-SHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMAL 229 (745)
T ss_pred eccCcceeeeccC--CchhhhhccchhheeeeEEe--cC-CCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecC
Confidence 9999999999986 56778899999999998864 23 34789999999999999 7889999999999999999888
Q ss_pred CCcEEEEEeCCCcEEEEeCCCcceeeecccCccceEEEEEecCCCeEEEEecCCeEEEEecc
Q 047355 242 ELRIIITASEDGTILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGCDNGTLIVKIGN 303 (312)
Q Consensus 242 ~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~v~~~~ 303 (312)
+.+.++++++|++++||+.. +..+.+.-+...+|++.+-++|. |++|+.||.|+|.=-+
T Consensus 230 ~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 230 SDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVD 288 (745)
T ss_pred CCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEec
Confidence 88999999999999999976 55555555556899999888865 6778899999987543
No 72
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=100.00 E-value=3.1e-31 Score=216.85 Aligned_cols=279 Identities=19% Similarity=0.295 Sum_probs=244.1
Q ss_pred CcEEEEEEcCCCCeEEEEecCCeEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEecCCCeEEEEEccCceeeeee
Q 047355 18 DRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEF 97 (312)
Q Consensus 18 ~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~ 97 (312)
..|.++...|..+.+++|+.|..+.++|.++.+....+.+|.-.|..+.|+++...+++++.|..|++|...........
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~ 299 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSS 299 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccc
Confidence 47889988888889999999999999999999999999999999999999999999999999999999998877777788
Q ss_pred cccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEec-CCccceEEEEeCCCCCCEEEEEeCCCeEEEEEcCC
Q 047355 98 EAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFE-GHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDS 176 (312)
Q Consensus 98 ~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~ 176 (312)
..|+.+|+.+..+|.+.|+++++.|++.-+.|++.......... ...-.+.+..|+| ++.+|.+|+.|+.|++||+.+
T Consensus 300 ~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwdlks 378 (506)
T KOG0289|consen 300 RPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWDLKS 378 (506)
T ss_pred ccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcC-CceEEeccCCCceEEEEEcCC
Confidence 89999999999999999999999999999999887644333222 2223467889998 568999999999999999999
Q ss_pred CcceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEecccc-cCeEEEEEeCCCcEEEEEeCCCcE
Q 047355 177 SAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHT-NNVTAVCFHPELRIIITASEDGTI 255 (312)
Q Consensus 177 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~-~~i~~l~~~~~~~~l~s~s~dg~v 255 (312)
......|.+|..+|..+.| +.+|.|++++++|+.|++||++..+..+++.... .++.++.|.+.|++|+.++.|=.|
T Consensus 379 ~~~~a~Fpght~~vk~i~F--sENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~V 456 (506)
T KOG0289|consen 379 QTNVAKFPGHTGPVKAISF--SENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQV 456 (506)
T ss_pred ccccccCCCCCCceeEEEe--ccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEE
Confidence 9888899999999999985 7899999999999999999999887777765332 369999999999999999888777
Q ss_pred EEEeCC--CcceeeecccCccceEEEEEecCCCeEEEEecCCeEEE
Q 047355 256 LIWNAT--TFRLQNTLSSGLERVWSIGYKKGSNQVAFGCDNGTLIV 299 (312)
Q Consensus 256 ~iwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~v 299 (312)
++++-. .+.....+..+.+...++.|...-+++++++-|..+++
T Consensus 457 y~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~ 502 (506)
T KOG0289|consen 457 YICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRL 502 (506)
T ss_pred EEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEE
Confidence 777643 46677777788888999999999999999999988765
No 73
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=8.4e-31 Score=227.20 Aligned_cols=290 Identities=20% Similarity=0.317 Sum_probs=233.9
Q ss_pred hhhhcccCcEEEEEEcCCCCeEEEEecCCeEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEecCCCeEEEEEccC
Q 047355 11 KEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNT 90 (312)
Q Consensus 11 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~ 90 (312)
-.|.+|+.+|+.+.|+..|.+|++|+.|+.|.+||+-...-...+++|...|+...|..+.+++++.+.|+.|++||+++
T Consensus 101 ~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~t 180 (888)
T KOG0306|consen 101 ITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLET 180 (888)
T ss_pred eeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCCeEEEEeccCceEEEEeccc
Confidence 46889999999999999999999999999999999987777788999999999999999899999999999999999999
Q ss_pred ceeeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCC--c---------------------eee----------
Q 047355 91 MASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKN--W---------------------ECT---------- 137 (312)
Q Consensus 91 ~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~--~---------------------~~~---------- 137 (312)
..+.++.-.|...|..+++++ +.+++++.|+.+++|++... . ...
T Consensus 181 qhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~ 258 (888)
T KOG0306|consen 181 QHCFETHVDHRGEIWALVLDE--KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRF 258 (888)
T ss_pred ceeeeEEecccceEEEEEEec--ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccE
Confidence 999999999999999999987 67889999999999986100 0 000
Q ss_pred --------------------------------------------------------------------------------
Q 047355 138 -------------------------------------------------------------------------------- 137 (312)
Q Consensus 138 -------------------------------------------------------------------------------- 137 (312)
T Consensus 259 ~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~l 338 (888)
T KOG0306|consen 259 LVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTL 338 (888)
T ss_pred EEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeE
Confidence
Q ss_pred ----------------------------eEecCCccceEEEEeCCCCCCEEEEEeCCCeEEEEEcCCCcce---------
Q 047355 138 ----------------------------QTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAK--------- 180 (312)
Q Consensus 138 ----------------------------~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~--------- 180 (312)
..+.+|...|..+.++. .+.++..+..+++++|+..+.+++
T Consensus 339 v~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~--d~~~~~Sga~~SikiWn~~t~kciRTi~~~y~l 416 (888)
T KOG0306|consen 339 VLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSS--DSILLASGAGESIKIWNRDTLKCIRTITCGYIL 416 (888)
T ss_pred EEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeec--CceeeeecCCCcEEEEEccCcceeEEeccccEE
Confidence 00112333333333332 123333344566777776654433
Q ss_pred -------------------------------eeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCC-----C---
Q 047355 181 -------------------------------FTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYET-----K--- 221 (312)
Q Consensus 181 -------------------------------~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~-----~--- 221 (312)
.++.+|.+.+..++ .+||+..+++||.|.+|++||..- +
T Consensus 417 ~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~--~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~ 494 (888)
T KOG0306|consen 417 ASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSIS--LSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQK 494 (888)
T ss_pred EEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeee--ecCCCCceEEecCCcEEEEEeEEEEeccCcccc
Confidence 23456788888776 578899999999999999999631 1
Q ss_pred eEEE-----EecccccCeEEEEEeCCCcEEEEEeCCCcEEEEeCCCcceeeecccCccceEEEEEecCCCeEEEEecCCe
Q 047355 222 TCVQ-----ILEGHTNNVTAVCFHPELRIIITASEDGTILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGCDNGT 296 (312)
Q Consensus 222 ~~~~-----~~~~h~~~i~~l~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~ 296 (312)
+.+. ++. -.+.|.|+.+|||+++||.+--|.+|++|-+.+.+..-++-+|.-+|.|+..+||++.|++|+.|..
T Consensus 495 k~lsl~~~rtLe-l~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKn 573 (888)
T KOG0306|consen 495 KVLSLKHTRTLE-LEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKN 573 (888)
T ss_pred eeeeeccceEEe-ccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCc
Confidence 1111 111 3567999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccCCCC
Q 047355 297 LIVKIGNSSGC 307 (312)
Q Consensus 297 i~v~~~~~~~~ 307 (312)
+.||..++-.|
T Consensus 574 VKiWGLdFGDC 584 (888)
T KOG0306|consen 574 VKIWGLDFGDC 584 (888)
T ss_pred eEEeccccchh
Confidence 99999998888
No 74
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=2e-30 Score=229.05 Aligned_cols=264 Identities=15% Similarity=0.179 Sum_probs=200.6
Q ss_pred CcEEEEEEcCCCCeEEEEecCCeEEEEeccCCcee-------------eeEEecCCceeEEEEee-CCcEEEEecCCCeE
Q 047355 18 DRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTE-------------KSVKVTDSPVRTAKFVA-REHWIVCGSDDKFI 83 (312)
Q Consensus 18 ~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~-------------~~~~~~~~~v~~~~~~~-~~~~l~~g~~dg~i 83 (312)
..|+....++++..++++..+.....|+...+... ..+.+|.++|..+.|+| ++.+|++|+.|++|
T Consensus 21 ~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtI 100 (493)
T PTZ00421 21 LNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTI 100 (493)
T ss_pred eccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEE
Confidence 45666777788777888887777777775433211 13567888999999999 78899999999999
Q ss_pred EEEEccCc-------eeeeeecccccceeEEEEecCC-CEEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCC
Q 047355 84 RVFDYNTM-------ASVKEFEAHEDYIRSLAVHPTF-PFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPK 155 (312)
Q Consensus 84 ~iwd~~~~-------~~~~~~~~h~~~i~~~~~~~~~-~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 155 (312)
++||+.+. ..+..+.+|...|.+++|+|++ .+|++++.|+.|++||+... .....+.+|...+..+.|+|
T Consensus 101 kIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg-~~~~~l~~h~~~V~sla~sp- 178 (493)
T PTZ00421 101 MGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERG-KAVEVIKCHSDQITSLEWNL- 178 (493)
T ss_pred EEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCC-eEEEEEcCCCCceEEEEEEC-
Confidence 99998754 2456788999999999999985 68999999999999999865 45667888999999999998
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCcceeeecccccceeEEEEEEcCCceEEEEEe----CCCeEEEEeCCCCe-EEEEeccc
Q 047355 156 DLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGS----DDFTVKVWDYETKT-CVQILEGH 230 (312)
Q Consensus 156 ~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~----~dg~i~vwd~~~~~-~~~~~~~h 230 (312)
++.++++++.|++|++||+++++....+.+|......... ..+++..+++++ .|+.|++||+++.. ++.....+
T Consensus 179 dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~-w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d 257 (493)
T PTZ00421 179 DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCL-WAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLD 257 (493)
T ss_pred CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEE-EcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccC
Confidence 5689999999999999999999888888888765432222 234444555443 47999999998643 44444333
Q ss_pred c-cCeEEEEEeCCCcEEEEEe-CCCcEEEEeCCCcceeeeccc-CccceEEEEEecC
Q 047355 231 T-NNVTAVCFHPELRIIITAS-EDGTILIWNATTFRLQNTLSS-GLERVWSIGYKKG 284 (312)
Q Consensus 231 ~-~~i~~l~~~~~~~~l~s~s-~dg~v~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~ 284 (312)
. ..+....|++++.+|++++ .|+.|++||+.++++...... .......++|.|.
T Consensus 258 ~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 258 QSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred CCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccc
Confidence 3 4466677899999998887 599999999998876654433 2234455555554
No 75
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=4.1e-31 Score=237.76 Aligned_cols=286 Identities=18% Similarity=0.296 Sum_probs=234.7
Q ss_pred hhcc-cCcEEEEEEcCCCCeEEEEe--cCCeEEEEeccCC------------ceeeeEEecCCceeEEEEeeCCcEEEEe
Q 047355 13 FIQK-SDRVKSVDFHPTQPWVLASL--YSGTVCIWNYHSQ------------TTEKSVKVTDSPVRTAKFVAREHWIVCG 77 (312)
Q Consensus 13 ~~~~-~~~i~~~~~~~~~~~l~~~~--~dg~v~iw~~~~~------------~~~~~~~~~~~~v~~~~~~~~~~~l~~g 77 (312)
+..| ...|.+++.|||+..+++|+ .||.++||+.+.- +.+.++..|.+.|.++.|++||++|++|
T Consensus 8 wv~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsG 87 (942)
T KOG0973|consen 8 WVNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASG 87 (942)
T ss_pred ccccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeec
Confidence 4444 35799999999999999999 9999999986431 2334566788999999999999999999
Q ss_pred cCCCeEEEEEccC------------------ceeeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeE
Q 047355 78 SDDKFIRVFDYNT------------------MASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQT 139 (312)
Q Consensus 78 ~~dg~i~iwd~~~------------------~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~ 139 (312)
++|+.|.+|.... .+....+.+|...|.+++|+|++.+++++|.|++|.+||..+- .....
T Consensus 88 SDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF-~~~~v 166 (942)
T KOG0973|consen 88 SDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTF-ELLKV 166 (942)
T ss_pred cCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccc-eeeee
Confidence 9999999998762 1245667899999999999999999999999999999998766 88889
Q ss_pred ecCCccceEEEEeCCCCCCEEEEEeCCCeEEEEEcCCCcceeeecccccc----eeEEEEEEcCCceEEEEEeC----CC
Q 047355 140 FEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKG----INCIDYFITSDKVYLITGSD----DF 211 (312)
Q Consensus 140 ~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~~~~~----v~~~~~~~~~~~~~l~sg~~----dg 211 (312)
+.+|...|..+.|+|. +.+|++-+.|++|++|....-...+.+.++... ........+|||.+|++... -.
T Consensus 167 l~~H~s~VKGvs~DP~-Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~ 245 (942)
T KOG0973|consen 167 LRGHQSLVKGVSWDPI-GKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKS 245 (942)
T ss_pred eecccccccceEECCc-cCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcc
Confidence 9999999999999996 589999999999999997765566666554432 22334456899999998643 33
Q ss_pred eEEEEeCCCCeEEEEecccccCeEEEEEeCC-----Cc------------EEEEEeCCCcEEEEeCCCcceeeeccc-Cc
Q 047355 212 TVKVWDYETKTCVQILEGHTNNVTAVCFHPE-----LR------------IIITASEDGTILIWNATTFRLQNTLSS-GL 273 (312)
Q Consensus 212 ~i~vwd~~~~~~~~~~~~h~~~i~~l~~~~~-----~~------------~l~s~s~dg~v~iwd~~~~~~~~~~~~-~~ 273 (312)
.+.+.+-.+.+.-..+-||.+++.+++|+|. .+ .+|+||.|++|-||.....++...... -.
T Consensus 246 ~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~ 325 (942)
T KOG0973|consen 246 TIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFN 325 (942)
T ss_pred eeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhc
Confidence 6888887778888889999999999999882 12 689999999999999866554433222 24
Q ss_pred cceEEEEEecCCCeEEEEecCCeEEEE
Q 047355 274 ERVWSIGYKKGSNQVAFGCDNGTLIVK 300 (312)
Q Consensus 274 ~~v~~~~~~~~~~~l~~~~~~g~i~v~ 300 (312)
..|..+.|+|||-.|.++|-||+|.+-
T Consensus 326 ~SI~DmsWspdG~~LfacS~DGtV~~i 352 (942)
T KOG0973|consen 326 KSIVDMSWSPDGFSLFACSLDGTVALI 352 (942)
T ss_pred CceeeeeEcCCCCeEEEEecCCeEEEE
Confidence 579999999999999999999998753
No 76
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=8.7e-33 Score=218.76 Aligned_cols=253 Identities=20% Similarity=0.362 Sum_probs=221.7
Q ss_pred chhhhhhhhhcccCcEEEEEEcCCCCeEEEEecCCeEEEEeccCCceeeeEE-ecCCceeEEEEeeCCcEEEEecCCCeE
Q 047355 5 LELQIEKEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVK-VTDSPVRTAKFVAREHWIVCGSDDKFI 83 (312)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~g~~dg~i 83 (312)
++++.+..|.-++++|.+++|+.|...|++|+.||.|++|.++++.+++.|. .|...|+++.|+.|+..+++++.|.++
T Consensus 251 LkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tv 330 (508)
T KOG0275|consen 251 LKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTV 330 (508)
T ss_pred hhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceE
Confidence 3444555677889999999999999999999999999999999999998886 788899999999999999999999999
Q ss_pred EEEEccCceeeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEec--CCccceEEEEeCCCCCCEEE
Q 047355 84 RVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFE--GHSHYVMQSAFNPKDLNTFA 161 (312)
Q Consensus 84 ~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~ 161 (312)
++--++++++++++++|+..|+...|.++|..+++++.||+|++|+..+. ++..+|. +....|..+..-|+++..++
T Consensus 331 RiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~Ktt-eC~~Tfk~~~~d~~vnsv~~~PKnpeh~i 409 (508)
T KOG0275|consen 331 RIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTT-ECLSTFKPLGTDYPVNSVILLPKNPEHFI 409 (508)
T ss_pred EEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcch-hhhhhccCCCCcccceeEEEcCCCCceEE
Confidence 99999999999999999999999999999999999999999999998765 5555554 34457788888899999999
Q ss_pred EEeCCCeEEEEEcCCCcceeee-cccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEecccccCeEEEEEe
Q 047355 162 SASLDGTIQIWNMDSSAAKFTL-DAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFH 240 (312)
Q Consensus 162 s~s~dg~v~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~i~~l~~~ 240 (312)
+|....+|.+.++.. +.+..+ .+.+.+-..++...+|.|.++.+.++|+.++.|...++++..++.-|...+-.++.+
T Consensus 410 VCNrsntv~imn~qG-QvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HH 488 (508)
T KOG0275|consen 410 VCNRSNTVYIMNMQG-QVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHH 488 (508)
T ss_pred EEcCCCeEEEEeccc-eEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccC
Confidence 999999999999864 333343 233333333444578999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEeCCCcEEEEe
Q 047355 241 PELRIIITASEDGTILIWN 259 (312)
Q Consensus 241 ~~~~~l~s~s~dg~v~iwd 259 (312)
|....+|+-++||.+++|.
T Consensus 489 PHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 489 PHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred cccchhhhhcccchhhhcC
Confidence 9999999999999999995
No 77
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=3.7e-31 Score=208.24 Aligned_cols=290 Identities=19% Similarity=0.301 Sum_probs=233.8
Q ss_pred hhhcccCcEEEEEEcCCCCeEEEEecCCeEEEEeccCC------------------ceeeeEEecCCceeEEEEeeCCcE
Q 047355 12 EFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQ------------------TTEKSVKVTDSPVRTAKFVAREHW 73 (312)
Q Consensus 12 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~------------------~~~~~~~~~~~~v~~~~~~~~~~~ 73 (312)
.+..|+.+..+.+|+|||..+++|+.|-.|+|.|.+.. ..++++..|..+|+.+.|+|....
T Consensus 107 ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~I 186 (430)
T KOG0640|consen 107 YLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETI 186 (430)
T ss_pred EEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhhe
Confidence 35678899999999999999999999999999998621 234556678889999999999999
Q ss_pred EEEecCCCeEEEEEccCceeeee--ecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeee---EecCCccceE
Q 047355 74 IVCGSDDKFIRVFDYNTMASVKE--FEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQ---TFEGHSHYVM 148 (312)
Q Consensus 74 l~~g~~dg~i~iwd~~~~~~~~~--~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~---~~~~~~~~v~ 148 (312)
|++|+.|++|++||+......+. +-....+|.++.|||.|.+++.|...-++++||+++. ++.. .-..|+..|.
T Consensus 187 LiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~-QcfvsanPd~qht~ai~ 265 (430)
T KOG0640|consen 187 LISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTY-QCFVSANPDDQHTGAIT 265 (430)
T ss_pred EEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccce-eEeeecCccccccccee
Confidence 99999999999999876432222 2233468999999999999999999999999999875 3222 2356889999
Q ss_pred EEEeCCCCCCEEEEEeCCCeEEEEEcCCCcceeee-cccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEe
Q 047355 149 QSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTL-DAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQIL 227 (312)
Q Consensus 149 ~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~ 227 (312)
++.+++. +.+.+++|.||.|++||--+++++.++ .+|.+.-.|.+ .++.+++|+++.+.|..+++|.+.++.++..+
T Consensus 266 ~V~Ys~t-~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa-~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~Y 343 (430)
T KOG0640|consen 266 QVRYSST-GSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSA-VFTKNGKYILSSGKDSTVKLWEISTGRMLKEY 343 (430)
T ss_pred EEEecCC-ccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeE-EEccCCeEEeecCCcceeeeeeecCCceEEEE
Confidence 9999985 589999999999999999888888776 46766655544 46889999999999999999999999999988
Q ss_pred cccc-----cCeEEEEEeCCCcEEEEEeC-CCcEEEEeCCCcceeeec-ccCccceEEEEEecCCCeEEEEecCCeEEEE
Q 047355 228 EGHT-----NNVTAVCFHPELRIIITASE-DGTILIWNATTFRLQNTL-SSGLERVWSIGYKKGSNQVAFGCDNGTLIVK 300 (312)
Q Consensus 228 ~~h~-----~~i~~l~~~~~~~~l~s~s~-dg~v~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~~g~i~v~ 300 (312)
.|-. .--+...|+....+++.-.+ .+.+.-||.++......+ -+|.+.+..+.-+|.+..+++|++|-.+++|
T Consensus 344 tGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFW 423 (430)
T KOG0640|consen 344 TGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFW 423 (430)
T ss_pred ecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeee
Confidence 7542 12345567776666655443 467999999886544333 3678899999999999999999999999999
Q ss_pred eccC
Q 047355 301 IGNS 304 (312)
Q Consensus 301 ~~~~ 304 (312)
-.+.
T Consensus 424 yrr~ 427 (430)
T KOG0640|consen 424 YRRV 427 (430)
T ss_pred eecc
Confidence 7764
No 78
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=6.3e-31 Score=216.44 Aligned_cols=278 Identities=19% Similarity=0.357 Sum_probs=226.0
Q ss_pred hhhhhcccCcEEEEEEcCCCCeEEEEecCCeEEEEeccCCceee----e-------------E-EecCCceeEEEEeeCC
Q 047355 10 EKEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEK----S-------------V-KVTDSPVRTAKFVARE 71 (312)
Q Consensus 10 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~----~-------------~-~~~~~~v~~~~~~~~~ 71 (312)
.+.+..|.-.|.+++++|+..++++++.+|+|.-|+..+++..+ . - ..|...+.+++.++|+
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 45566788899999999999999999999999999986654221 0 0 1455678899999999
Q ss_pred cEEEEecCCCeEEEEEccCceeeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEE
Q 047355 72 HWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSA 151 (312)
Q Consensus 72 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~ 151 (312)
++|++|+.|..|.+|+.++.+.++.+.+|.+.|.+++|-.....+++++.|+.+++|++... ....++-+|...|..+.
T Consensus 215 kylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~-s~vetlyGHqd~v~~Id 293 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQL-SYVETLYGHQDGVLGID 293 (479)
T ss_pred cEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHh-HHHHHHhCCccceeeec
Confidence 99999999999999999999999999999999999999887778999999999999998754 44556788999998887
Q ss_pred eCCCCCCEEEEEeCCCeEEEEEcCCCcceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEec-cc
Q 047355 152 FNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILE-GH 230 (312)
Q Consensus 152 ~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~-~h 230 (312)
.... ...+-+|+.|+++++|++. ......+.++...+.|+++.. ..-+++|+.+|.|.+|++...+++.+.+ +|
T Consensus 294 aL~r-eR~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~In---~~HfvsGSdnG~IaLWs~~KKkplf~~~~AH 368 (479)
T KOG0299|consen 294 ALSR-ERCVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFIN---DEHFVSGSDNGSIALWSLLKKKPLFTSRLAH 368 (479)
T ss_pred hhcc-cceEEeccccceeEEEecc-ccceeeeeCCCCCeeeEEEec---ccceeeccCCceEEEeeecccCceeEeeccc
Confidence 6543 2445556699999999994 444556678888899998753 2458999999999999998888876653 22
Q ss_pred -----------ccCeEEEEEeCCCcEEEEEeCCCcEEEEeCCCc----ceeeecccCccceEEEEEecCCCeEEEEecC
Q 047355 231 -----------TNNVTAVCFHPELRIIITASEDGTILIWNATTF----RLQNTLSSGLERVWSIGYKKGSNQVAFGCDN 294 (312)
Q Consensus 231 -----------~~~i~~l~~~~~~~~l~s~s~dg~v~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~ 294 (312)
..+|++|+..|...++|+|+.+|.|++|.+..+ .++..+. ..+-|.+++|+++|+.|.+|...
T Consensus 369 gv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGk 446 (479)
T KOG0299|consen 369 GVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGK 446 (479)
T ss_pred cccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEeccc
Confidence 238999999999999999999999999998775 2333333 45679999999999987777654
No 79
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.9e-31 Score=219.16 Aligned_cols=245 Identities=26% Similarity=0.414 Sum_probs=208.0
Q ss_pred hhhhhhcccCcEEEEEEcCCCCeEEEEecCCeEEEEeccCCceeeeEEecCCceeEEEEeeCCc-EEEEecCCCeEEEEE
Q 047355 9 IEKEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREH-WIVCGSDDKFIRVFD 87 (312)
Q Consensus 9 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~g~~dg~i~iwd 87 (312)
..+.+....+.|++++|..||+.|++|...|.|+|+|+.++..++.+..|..++....|++++. .+.+|+.|+.+++||
T Consensus 60 ~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d 139 (487)
T KOG0310|consen 60 VRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWD 139 (487)
T ss_pred hhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEE
Confidence 3456777789999999999999999999999999999777677788999999999999998654 566899999999999
Q ss_pred ccCceeeeeecccccceeEEEEecCCC-EEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeCC
Q 047355 88 YNTMASVKEFEAHEDYIRSLAVHPTFP-FVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLD 166 (312)
Q Consensus 88 ~~~~~~~~~~~~h~~~i~~~~~~~~~~-~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d 166 (312)
+.+......+.+|+++|.+.+++|... +++|||.||.||+||.+.......+ -.|..+|..+.+-|. +.++++++ .
T Consensus 140 ~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~e-lnhg~pVe~vl~lps-gs~iasAg-G 216 (487)
T KOG0310|consen 140 LSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVE-LNHGCPVESVLALPS-GSLIASAG-G 216 (487)
T ss_pred cCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEE-ecCCCceeeEEEcCC-CCEEEEcC-C
Confidence 999887668899999999999999765 6789999999999998865433333 358889999999985 46777765 4
Q ss_pred CeEEEEEcCCCcceee-ecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEecccccCeEEEEEeCCCcE
Q 047355 167 GTIQIWNMDSSAAKFT-LDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRI 245 (312)
Q Consensus 167 g~v~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~i~~l~~~~~~~~ 245 (312)
..|++||+-++..... +..|.+.|+|+.+ ..++..|++|+-|+.|++||+.+.+.++.+. ..++|.+++.+|+.+.
T Consensus 217 n~vkVWDl~~G~qll~~~~~H~KtVTcL~l--~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t 293 (487)
T KOG0310|consen 217 NSVKVWDLTTGGQLLTSMFNHNKTVTCLRL--ASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQT 293 (487)
T ss_pred CeEEEEEecCCceehhhhhcccceEEEEEe--ecCCceEeecccccceEEEEccceEEEEeee-cccceeeEEecCCCce
Confidence 5799999986554444 4459999999986 4577899999999999999988888888776 6789999999999999
Q ss_pred EEEEeCCCcEEEEe
Q 047355 246 IITASEDGTILIWN 259 (312)
Q Consensus 246 l~s~s~dg~v~iwd 259 (312)
++.|..||.+.+=+
T Consensus 294 ~viGmsnGlv~~rr 307 (487)
T KOG0310|consen 294 VVIGMSNGLVSIRR 307 (487)
T ss_pred EEEecccceeeeeh
Confidence 99999999987764
No 80
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=4e-29 Score=188.83 Aligned_cols=282 Identities=21% Similarity=0.272 Sum_probs=225.0
Q ss_pred cCcEEEEEEcCCCCeEEEEecCCeEEEEeccCCc---------------eeeeEEecCCceeEEEEeeCCcEEEEecCCC
Q 047355 17 SDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQT---------------TEKSVKVTDSPVRTAKFVAREHWIVCGSDDK 81 (312)
Q Consensus 17 ~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~---------------~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg 81 (312)
+..|.+++|+|.|...++|+...+.||..+..-. ..+..+.|.+.|.+.+|++.+++|++|++|+
T Consensus 32 sqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk 111 (350)
T KOG0641|consen 32 SQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDK 111 (350)
T ss_pred hhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCc
Confidence 4689999999999999999999999998653210 0122346778999999999999999999999
Q ss_pred eEEEEEccCce-----eeeeecccccceeEEEEecC----CCEEEEEeC-CCcEEEEeCCCCceeeeEecCCccceEEEE
Q 047355 82 FIRVFDYNTMA-----SVKEFEAHEDYIRSLAVHPT----FPFVLTASD-DKLIKLWDWEKNWECTQTFEGHSHYVMQSA 151 (312)
Q Consensus 82 ~i~iwd~~~~~-----~~~~~~~h~~~i~~~~~~~~----~~~l~t~s~-d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~ 151 (312)
+|++...+... ...++.-|.+.|..++|-.+ +.+|++++. |..|.+=|-.++ +..+.+.+|+..+..+-
T Consensus 112 ~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g-~~~~a~sghtghilaly 190 (350)
T KOG0641|consen 112 TIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRG-QGFHALSGHTGHILALY 190 (350)
T ss_pred eEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCC-CcceeecCCcccEEEEE
Confidence 99998665332 23467789999999999643 345666554 445555555444 55677889998887653
Q ss_pred eCCCCCCEEEEEeCCCeEEEEEcCCCcceeeecc--cc-----cceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEE
Q 047355 152 FNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDA--HE-----KGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCV 224 (312)
Q Consensus 152 ~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~--~~-----~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~ 224 (312)
+. ++-.|++|+.|.+||+||++-..++.++.. |. ..|..++ ..|.|+++++|-.|....+||++.+..+
T Consensus 191 -sw-n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~--vdpsgrll~sg~~dssc~lydirg~r~i 266 (350)
T KOG0641|consen 191 -SW-NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVA--VDPSGRLLASGHADSSCMLYDIRGGRMI 266 (350)
T ss_pred -Ee-cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEE--ECCCcceeeeccCCCceEEEEeeCCcee
Confidence 22 347899999999999999998877766542 22 2344444 5788999999999999999999999999
Q ss_pred EEecccccCeEEEEEeCCCcEEEEEeCCCcEEEEeCCCc---c-eeeecccCccceEEEEEecCCCeEEEEecCCeEEEE
Q 047355 225 QILEGHTNNVTAVCFHPELRIIITASEDGTILIWNATTF---R-LQNTLSSGLERVWSIGYKKGSNQVAFGCDNGTLIVK 300 (312)
Q Consensus 225 ~~~~~h~~~i~~l~~~~~~~~l~s~s~dg~v~iwd~~~~---~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~v~ 300 (312)
+.+..|...|+++.|+|...++++++.|..|++-|++.- + .+....+|...+..+.|.|..-.+++.+.|.++-+|
T Consensus 267 q~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlw 346 (350)
T KOG0641|consen 267 QRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLW 346 (350)
T ss_pred eeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEe
Confidence 999999999999999999999999999999999998641 2 244566788999999999999999999999999998
Q ss_pred ecc
Q 047355 301 IGN 303 (312)
Q Consensus 301 ~~~ 303 (312)
..+
T Consensus 347 a~~ 349 (350)
T KOG0641|consen 347 ALN 349 (350)
T ss_pred ccC
Confidence 754
No 81
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=4.4e-30 Score=226.88 Aligned_cols=229 Identities=16% Similarity=0.260 Sum_probs=180.9
Q ss_pred hhhcccCcEEEEEEcC-CCCeEEEEecCCeEEEEeccCC-------ceeeeEEecCCceeEEEEeeCC-cEEEEecCCCe
Q 047355 12 EFIQKSDRVKSVDFHP-TQPWVLASLYSGTVCIWNYHSQ-------TTEKSVKVTDSPVRTAKFVARE-HWIVCGSDDKF 82 (312)
Q Consensus 12 ~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~iw~~~~~-------~~~~~~~~~~~~v~~~~~~~~~-~~l~~g~~dg~ 82 (312)
.+.+|.+.|.+++|+| ++.+|++|+.|++|++||+... ..+..+..|...|..+.|+|++ .+|++|+.|++
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt 149 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV 149 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence 3678999999999999 7889999999999999998654 2355677888999999999975 68999999999
Q ss_pred EEEEEccCceeeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEecCCccc-eEEEEeCCCCCCEEE
Q 047355 83 IRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHY-VMQSAFNPKDLNTFA 161 (312)
Q Consensus 83 i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~ 161 (312)
|++||+.++.....+..|...|.+++|+|++.+|++++.|+.|++||++.. .....+.+|... ...+.|.+.. ..++
T Consensus 150 VrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg-~~v~tl~~H~~~~~~~~~w~~~~-~~iv 227 (493)
T PTZ00421 150 VNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDG-TIVSSVEAHASAKSQRCLWAKRK-DLII 227 (493)
T ss_pred EEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCC-cEEEEEecCCCCcceEEEEcCCC-CeEE
Confidence 999999999888899999999999999999999999999999999999875 445667777654 3456777754 4555
Q ss_pred EEe----CCCeEEEEEcCCCcce-eeecccccceeEEEEEEcCCceEEEEEe-CCCeEEEEeCCCCeEEEEecc-cccCe
Q 047355 162 SAS----LDGTIQIWNMDSSAAK-FTLDAHEKGINCIDYFITSDKVYLITGS-DDFTVKVWDYETKTCVQILEG-HTNNV 234 (312)
Q Consensus 162 s~s----~dg~v~iwd~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~l~sg~-~dg~i~vwd~~~~~~~~~~~~-h~~~i 234 (312)
+++ .|+.|++||+++.... .....+......+ ...++++.++++|+ .|+.|++||+.+++++..... +..++
T Consensus 228 t~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~-~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~ 306 (493)
T PTZ00421 228 TLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFI-PFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPH 306 (493)
T ss_pred EEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEE-EEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCC
Confidence 443 4799999999875433 3333333222222 23467788888777 599999999998887766543 45578
Q ss_pred EEEEEeCCC
Q 047355 235 TAVCFHPEL 243 (312)
Q Consensus 235 ~~l~~~~~~ 243 (312)
.+++|.|..
T Consensus 307 ~g~~~~pk~ 315 (493)
T PTZ00421 307 KGLCMMPKW 315 (493)
T ss_pred cceEecccc
Confidence 899999853
No 82
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-31 Score=229.19 Aligned_cols=276 Identities=16% Similarity=0.295 Sum_probs=231.9
Q ss_pred EEEEc-CCCCeEEEEecCCeEEEEeccCCc------eeeeEEecCCceeEEEEeeCCcEEEEecCCCeEEEEEccCc--e
Q 047355 22 SVDFH-PTQPWVLASLYSGTVCIWNYHSQT------TEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTM--A 92 (312)
Q Consensus 22 ~~~~~-~~~~~l~~~~~dg~v~iw~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~--~ 92 (312)
++..+ |.+++|++|+.||.|++|+..... ...+++.|..-|..+....+++.+++++.|-+|++|+.... .
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~ 108 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTF 108 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcch
Confidence 55555 456679999999999999875322 25567788888999888889999999999999999998876 5
Q ss_pred eeeeecccccceeEEEE-ecCCCEEEEEeCCCcEEEEeCCCCce---------eeeEec-CCccceEEEEeCCCCCCEEE
Q 047355 93 SVKEFEAHEDYIRSLAV-HPTFPFVLTASDDKLIKLWDWEKNWE---------CTQTFE-GHSHYVMQSAFNPKDLNTFA 161 (312)
Q Consensus 93 ~~~~~~~h~~~i~~~~~-~~~~~~l~t~s~d~~v~iwd~~~~~~---------~~~~~~-~~~~~v~~~~~~~~~~~~~~ 161 (312)
++..+..|.++|.|+++ .++..++++||.|+.|.+||++.... ....+. ++...+.+++.++. +..++
T Consensus 109 c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t-~t~iv 187 (735)
T KOG0308|consen 109 CMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQT-GTIIV 187 (735)
T ss_pred hHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCc-ceEEE
Confidence 77889999999999999 77888899999999999999985422 112233 78888999999875 47899
Q ss_pred EEeCCCeEEEEEcCCCcceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEecccccCeEEEEEeC
Q 047355 162 SASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHP 241 (312)
Q Consensus 162 s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~i~~l~~~~ 241 (312)
+|+..+.+++||.++.+.+..+.+|+..|.++- .++||..++++|.||+|++||+...+++.++..|.+.|+++..+|
T Consensus 188 sGgtek~lr~wDprt~~kimkLrGHTdNVr~ll--~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~ 265 (735)
T KOG0308|consen 188 SGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLL--VNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSP 265 (735)
T ss_pred ecCcccceEEeccccccceeeeeccccceEEEE--EcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCC
Confidence 999999999999999999999999999999875 578999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEeCCCcEEEEeCCCcceeeecccCccceEEEEEecCCCeEEEEecCCeEEEE
Q 047355 242 ELRIIITASEDGTILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGCDNGTLIVK 300 (312)
Q Consensus 242 ~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~v~ 300 (312)
+-..+.+|+.||.|..=|+.+......+.....+|..+..+-..+.+=+++.|+.|.=|
T Consensus 266 sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW 324 (735)
T KOG0308|consen 266 SFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRW 324 (735)
T ss_pred CcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceec
Confidence 99999999999999999999876555566666667677666555555566667766543
No 83
>PTZ00420 coronin; Provisional
Probab=100.00 E-value=2.7e-29 Score=223.13 Aligned_cols=248 Identities=14% Similarity=0.215 Sum_probs=191.0
Q ss_pred EecCCeEEEEeccCCceeeeEEecCCceeEEEEeeC-CcEEEEecCCCeEEEEEccCce--------eeeeeccccccee
Q 047355 35 SLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAR-EHWIVCGSDDKFIRVFDYNTMA--------SVKEFEAHEDYIR 105 (312)
Q Consensus 35 ~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~g~~dg~i~iwd~~~~~--------~~~~~~~h~~~i~ 105 (312)
|+.++.|++|+.........+..|..+|.+++|+|+ +.+|++|+.|++|++||+.+.. ....+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 556789999998777777788889999999999996 7899999999999999987532 2346788999999
Q ss_pred EEEEecCCCE-EEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeCCCeEEEEEcCCCcceeeec
Q 047355 106 SLAVHPTFPF-VLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLD 184 (312)
Q Consensus 106 ~~~~~~~~~~-l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~ 184 (312)
+++|+|++.. +++++.|++|++||++.... ...+. |...+.++.|+|. +.+|++++.|+.|++||++++.....+.
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~-~~~i~-~~~~V~Slswspd-G~lLat~s~D~~IrIwD~Rsg~~i~tl~ 206 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKR-AFQIN-MPKKLSSLKWNIK-GNLLSGTCVGKHMHIIDPRKQEIASSFH 206 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcE-EEEEe-cCCcEEEEEECCC-CCEEEEEecCCEEEEEECCCCcEEEEEe
Confidence 9999998876 46899999999999987633 33343 5567899999984 5789999999999999999998888899
Q ss_pred ccccceeEEEEE---EcCCceEEEEEeCCC----eEEEEeCCC-CeEEEEecc--cccCeEEEEEeCCCcEEEEEeCCCc
Q 047355 185 AHEKGINCIDYF---ITSDKVYLITGSDDF----TVKVWDYET-KTCVQILEG--HTNNVTAVCFHPELRIIITASEDGT 254 (312)
Q Consensus 185 ~~~~~v~~~~~~---~~~~~~~l~sg~~dg----~i~vwd~~~-~~~~~~~~~--h~~~i~~l~~~~~~~~l~s~s~dg~ 254 (312)
+|...+....+. +++++.++++++.|+ +|++||++. .+++..+.. +.+.+...-..+++.++++|+.|+.
T Consensus 207 gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~t 286 (568)
T PTZ00420 207 IHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGN 286 (568)
T ss_pred cccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCe
Confidence 998765544332 246777888877764 799999985 555555432 2333333333556889999999999
Q ss_pred EEEEeCCCcceeeeccc--CccceEEEEEecCCC
Q 047355 255 ILIWNATTFRLQNTLSS--GLERVWSIGYKKGSN 286 (312)
Q Consensus 255 v~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~ 286 (312)
|++|++....+ ..+.. +.....+++|.|+-.
T Consensus 287 Ir~~e~~~~~~-~~l~~~~s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 287 CRYYQHSLGSI-RKVNEYKSCSPFRSFGFLPKQI 319 (568)
T ss_pred EEEEEccCCcE-EeecccccCCCccceEEccccc
Confidence 99999976532 22222 345677889998754
No 84
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.98 E-value=4.4e-32 Score=207.43 Aligned_cols=248 Identities=22% Similarity=0.378 Sum_probs=208.5
Q ss_pred hhhhhhcccCcEEEEEEcCCCCeEEEEecCCeEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEecCCCeEEEEEc
Q 047355 9 IEKEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDY 88 (312)
Q Consensus 9 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~ 88 (312)
.+.+|.+|.+.|++.+.+.+..+-++++.|=+-++||.-++..+.+|. |..-|.+++|+.|.++|++|+.+..+++||+
T Consensus 51 wigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdl 129 (334)
T KOG0278|consen 51 WIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDL 129 (334)
T ss_pred cEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhc
Confidence 345688999999999999999999999999999999998887777775 4557999999999999999999999999999
Q ss_pred cCce-eeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeCCC
Q 047355 89 NTMA-SVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDG 167 (312)
Q Consensus 89 ~~~~-~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg 167 (312)
+..+ +.+++.+|.+.|..+.|....+.+++.+.|++||+||.++... .+++. -...|.++..++. ..+++....+
T Consensus 130 n~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~-v~sL~-~~s~VtSlEvs~d--G~ilTia~gs 205 (334)
T KOG0278|consen 130 NRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTE-VQSLE-FNSPVTSLEVSQD--GRILTIAYGS 205 (334)
T ss_pred cCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcE-EEEEe-cCCCCcceeeccC--CCEEEEecCc
Confidence 8754 6788999999999999998889999999999999999987644 33332 2345677778764 4577778889
Q ss_pred eEEEEEcCCCcceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEe-cccccCeEEEEEeCCCcEE
Q 047355 168 TIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQIL-EGHTNNVTAVCFHPELRII 246 (312)
Q Consensus 168 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~-~~h~~~i~~l~~~~~~~~l 246 (312)
+|.+||.++...+..+.... .|.+. ...|+..++++|+.|+.++.||..++.-+..+ ++|-++|.|+.|+|+|...
T Consensus 206 sV~Fwdaksf~~lKs~k~P~-nV~SA--SL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~y 282 (334)
T KOG0278|consen 206 SVKFWDAKSFGLLKSYKMPC-NVESA--SLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELY 282 (334)
T ss_pred eeEEeccccccceeeccCcc-ccccc--cccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCcee
Confidence 99999999887776554321 23333 35677788999999999999999999888876 8999999999999999999
Q ss_pred EEEeCCCcEEEEeCCCcc
Q 047355 247 ITASEDGTILIWNATTFR 264 (312)
Q Consensus 247 ~s~s~dg~v~iwd~~~~~ 264 (312)
|+||.||+||||....++
T Consensus 283 AsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 283 ASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred eccCCCceEEEEEecCCC
Confidence 999999999999976544
No 85
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=4e-31 Score=225.89 Aligned_cols=233 Identities=23% Similarity=0.415 Sum_probs=203.0
Q ss_pred eCCcEEEEecCCCeEEEEEccCce------eeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCc-eeeeEec
Q 047355 69 AREHWIVCGSDDKFIRVFDYNTMA------SVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNW-ECTQTFE 141 (312)
Q Consensus 69 ~~~~~l~~g~~dg~i~iwd~~~~~------~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~-~~~~~~~ 141 (312)
+.+++|++|+.||.|++|+..... ....++.|.+.|+++.....++.++++|.|-+|++|+..... .+...+.
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir 114 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIR 114 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhh
Confidence 456679999999999999875432 256788999999999998899999999999999999987653 5567788
Q ss_pred CCccceEEEEeCCCCCCEEEEEeCCCeEEEEEcCCCcc--e--------eeec-ccccceeEEEEEEcCCceEEEEEeCC
Q 047355 142 GHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAA--K--------FTLD-AHEKGINCIDYFITSDKVYLITGSDD 210 (312)
Q Consensus 142 ~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~--~--------~~~~-~~~~~v~~~~~~~~~~~~~l~sg~~d 210 (312)
.|..+|.++++-.++..++++|+.|+.|.+||++++.. . ..+. ++..++++++ ..+.+..+++|+..
T Consensus 115 ~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA--~N~t~t~ivsGgte 192 (735)
T KOG0308|consen 115 THKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLA--MNQTGTIIVSGGTE 192 (735)
T ss_pred cccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeee--cCCcceEEEecCcc
Confidence 99999999999555678999999999999999987632 1 1223 6777888887 36677899999999
Q ss_pred CeEEEEeCCCCeEEEEecccccCeEEEEEeCCCcEEEEEeCCCcEEEEeCCCcceeeecccCccceEEEEEecCCCeEEE
Q 047355 211 FTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITASEDGTILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAF 290 (312)
Q Consensus 211 g~i~vwd~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 290 (312)
+.+++||.++.+.+-.++||...|+.+..++||+.++++|+||+|++||+...+.+.++..|.+.||++.-+|+.+.+.+
T Consensus 193 k~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYs 272 (735)
T KOG0308|consen 193 KDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYS 272 (735)
T ss_pred cceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEe
Confidence 99999999999998889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCeEEEEecc
Q 047355 291 GCDNGTLIVKIGN 303 (312)
Q Consensus 291 ~~~~g~i~v~~~~ 303 (312)
|+.||.|+..-.+
T Consensus 273 G~rd~~i~~Tdl~ 285 (735)
T KOG0308|consen 273 GGRDGNIYRTDLR 285 (735)
T ss_pred cCCCCcEEecccC
Confidence 9999998865443
No 86
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=5.5e-30 Score=219.37 Aligned_cols=243 Identities=22% Similarity=0.339 Sum_probs=211.0
Q ss_pred cCcEEEEEEcCCCCeEEEEecCCeEEEEeccCCceeeeEEe-cCCceeEEEEeeCCcEEEEecCCCeEEEEEccCceeee
Q 047355 17 SDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKV-TDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVK 95 (312)
Q Consensus 17 ~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~ 95 (312)
.+.|+++.|+++|.+|++|..+|.|.|||....+....+.. |...|.+++|. +..+.+|+.|+.|..+|+...+...
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~ 294 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVV 294 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhh
Confidence 67899999999999999999999999999988888888888 88889888888 6779999999999999998766444
Q ss_pred e-ecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEe--CCCeEEEE
Q 047355 96 E-FEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASAS--LDGTIQIW 172 (312)
Q Consensus 96 ~-~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s--~dg~v~iw 172 (312)
. +.+|...|..+.|++++.++++|+.|+.+.|||... .++...+..|...|..++|.|-..++||+|+ .|+.|++|
T Consensus 295 ~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~-~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fw 373 (484)
T KOG0305|consen 295 STLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLS-PEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFW 373 (484)
T ss_pred hhhhcccceeeeeEECCCCCeeccCCCccceEeccCCC-ccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEE
Confidence 4 889999999999999999999999999999999844 3667789999999999999999999999974 69999999
Q ss_pred EcCCCcceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEecccccCeEEEEEeCCCcEEEEEeCC
Q 047355 173 NMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITASED 252 (312)
Q Consensus 173 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~s~d 252 (312)
|..++..+..+... ..|..+.|.....+.....|-.++.|.||+..+.+.+..+.+|...|..++++||+..+++|+.|
T Consensus 374 n~~~g~~i~~vdtg-sQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~D 452 (484)
T KOG0305|consen 374 NTNTGARIDSVDTG-SQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAAD 452 (484)
T ss_pred EcCCCcEecccccC-CceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEeccc
Confidence 99988877665442 45677776544333333345567889999999999999999999999999999999999999999
Q ss_pred CcEEEEeCCCc
Q 047355 253 GTILIWNATTF 263 (312)
Q Consensus 253 g~v~iwd~~~~ 263 (312)
.++++|++-..
T Consensus 453 ETlrfw~~f~~ 463 (484)
T KOG0305|consen 453 ETLRFWNLFDE 463 (484)
T ss_pred CcEEeccccCC
Confidence 99999998653
No 87
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=9.8e-30 Score=200.94 Aligned_cols=290 Identities=17% Similarity=0.255 Sum_probs=241.1
Q ss_pred chhhhhhhhhcccCcEEEEEEcCCCCeEEEEecCCeEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEecCCCeEE
Q 047355 5 LELQIEKEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIR 84 (312)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~ 84 (312)
...++.++|.+|.+.|+.++-....+.+.+++.|.+.+||.+++++++..+.+|.+.|++++|++.+.++++|+.|++-.
T Consensus 136 ~~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taH 215 (481)
T KOG0300|consen 136 VKFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAH 215 (481)
T ss_pred eeEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchH
Confidence 35667899999999999999998889999999999999999999999999999999999999999999999999999999
Q ss_pred EEEc------cC----------------------------------ceeeeeecccccceeEEEEecCCCEEEEEeCCCc
Q 047355 85 VFDY------NT----------------------------------MASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKL 124 (312)
Q Consensus 85 iwd~------~~----------------------------------~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~ 124 (312)
||.. .+ ..++..+.+|...|.+..|-..++.++++++|.+
T Consensus 216 IW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRT 295 (481)
T KOG0300|consen 216 IWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRT 295 (481)
T ss_pred HHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeecccc
Confidence 9951 10 0123456788889999999999999999999999
Q ss_pred EEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeCCCeEEEEEcCCC-cceeeecccccceeEEEEEEcCCceE
Q 047355 125 IKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSS-AAKFTLDAHEKGINCIDYFITSDKVY 203 (312)
Q Consensus 125 v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~ 203 (312)
..+||++++ +.+..+.+|......+.-+|. ..++++.+.|.+.++||++.. +.+..+++|+..|++..|. .+ ..
T Consensus 296 AnlwDVEtg-e~v~~LtGHd~ELtHcstHpt-QrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~--~d-d~ 370 (481)
T KOG0300|consen 296 ANLWDVETG-EVVNILTGHDSELTHCSTHPT-QRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFN--TD-DR 370 (481)
T ss_pred ceeeeeccC-ceeccccCcchhccccccCCc-ceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEe--cC-Cc
Confidence 999999987 677889999999998888885 478999999999999999853 4456789999999988753 22 34
Q ss_pred EEEEeCCCeEEEEeCCCC-eEEEEecccccCeEEEEEeCCCcEEEEEeCCCcEEEEeCCCccee----eecccCccceEE
Q 047355 204 LITGSDDFTVKVWDYETK-TCVQILEGHTNNVTAVCFHPELRIIITASEDGTILIWNATTFRLQ----NTLSSGLERVWS 278 (312)
Q Consensus 204 l~sg~~dg~i~vwd~~~~-~~~~~~~~h~~~i~~l~~~~~~~~l~s~s~dg~v~iwd~~~~~~~----~~~~~~~~~v~~ 278 (312)
+++|++|.+|++||+++. .++.+++ ..++++.++.+..++.+|---.++.||+||++..++. ..-.+|..-|.|
T Consensus 371 vVSgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c 449 (481)
T KOG0300|consen 371 VVSGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTC 449 (481)
T ss_pred eeecCCCceEEEeeeccccCcceeee-cCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeee
Confidence 899999999999999864 4566666 4678999999998888988888899999999765432 233455566999
Q ss_pred EEEec--CCCeEEEEecCCeEEEE
Q 047355 279 IGYKK--GSNQVAFGCDNGTLIVK 300 (312)
Q Consensus 279 ~~~~~--~~~~l~~~~~~g~i~v~ 300 (312)
++|.- .-+-|.+++=|..+.-|
T Consensus 450 ~AW~eehp~cnLftcGFDR~v~gW 473 (481)
T KOG0300|consen 450 CAWLEEHPACNLFTCGFDRMVAGW 473 (481)
T ss_pred eeccccCcccccccccccceeeee
Confidence 99963 34666777777766654
No 88
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=3.7e-28 Score=215.87 Aligned_cols=224 Identities=14% Similarity=0.213 Sum_probs=179.0
Q ss_pred ecCCCeEEEEEccCceeeeeecccccceeEEEEecC-CCEEEEEeCCCcEEEEeCCCCc-------eeeeEecCCccceE
Q 047355 77 GSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPT-FPFVLTASDDKLIKLWDWEKNW-------ECTQTFEGHSHYVM 148 (312)
Q Consensus 77 g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~-~~~l~t~s~d~~v~iwd~~~~~-------~~~~~~~~~~~~v~ 148 (312)
|+.++.+++|+..+...+..+.+|.++|.+++|+|. +.+|++|+.|++|++||+.... .+...+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 667899999998877778889999999999999997 7899999999999999986432 12345788999999
Q ss_pred EEEeCCCCCCEEEEEeCCCeEEEEEcCCCcceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEec
Q 047355 149 QSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILE 228 (312)
Q Consensus 149 ~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~ 228 (312)
.+.|+|.+...+++++.|++|++||+++.+....+. |...+.++.| +++|.+|++++.|+.|++||+++++.+..+.
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~Slsw--spdG~lLat~s~D~~IrIwD~Rsg~~i~tl~ 206 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKW--NIKGNLLSGTCVGKHMHIIDPRKQEIASSFH 206 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEE--CCCCCEEEEEecCCEEEEEECCCCcEEEEEe
Confidence 999999766677899999999999999887766664 4566787775 6789999999999999999999999999999
Q ss_pred ccccCeEE-----EEEeCCCcEEEEEeCCC----cEEEEeCCC-cceeeecc--cCccceEEEEEecCCCeEEEEecCCe
Q 047355 229 GHTNNVTA-----VCFHPELRIIITASEDG----TILIWNATT-FRLQNTLS--SGLERVWSIGYKKGSNQVAFGCDNGT 296 (312)
Q Consensus 229 ~h~~~i~~-----l~~~~~~~~l~s~s~dg----~v~iwd~~~-~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~~g~ 296 (312)
+|.+.+.. ..|++++.+|++++.|+ .|+|||+++ .+.+..+. .....+...-..+++.++++|+.|++
T Consensus 207 gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~t 286 (568)
T PTZ00420 207 IHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGN 286 (568)
T ss_pred cccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCe
Confidence 99876543 33568888999988774 799999985 34444332 22233333333456888999999999
Q ss_pred EEEEecc
Q 047355 297 LIVKIGN 303 (312)
Q Consensus 297 i~v~~~~ 303 (312)
|+++-..
T Consensus 287 Ir~~e~~ 293 (568)
T PTZ00420 287 CRYYQHS 293 (568)
T ss_pred EEEEEcc
Confidence 9998653
No 89
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=1.8e-29 Score=203.35 Aligned_cols=247 Identities=20% Similarity=0.336 Sum_probs=202.9
Q ss_pred hhhhhhcccCcEEEEEEcCCC---CeEEEEecCCeEEEEeccCCce----eeeEEecCCceeEEEEeeCCcEEEEecCCC
Q 047355 9 IEKEFIQKSDRVKSVDFHPTQ---PWVLASLYSGTVCIWNYHSQTT----EKSVKVTDSPVRTAKFVAREHWIVCGSDDK 81 (312)
Q Consensus 9 ~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~dg~v~iw~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg 81 (312)
.++++.+|.++|.+++|.-.. ..+++++.|.++++|.++.++. .+.-++|..+|.++...+++..+++|+.|.
T Consensus 136 ~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~ 215 (423)
T KOG0313|consen 136 SIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDT 215 (423)
T ss_pred eEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccc
Confidence 456788999999999996433 3599999999999999876533 233458999999999999999999999999
Q ss_pred eEEEEEccC-------------------------ceeeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCcee
Q 047355 82 FIRVFDYNT-------------------------MASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWEC 136 (312)
Q Consensus 82 ~i~iwd~~~-------------------------~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~ 136 (312)
+|.+|+..+ ..++-.+++|.++|.++.|.+ ...+.++|+|.+|+.||+......
T Consensus 216 ~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~ 294 (423)
T KOG0313|consen 216 MLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLK 294 (423)
T ss_pred eeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccce
Confidence 999998321 123445789999999999988 677899999999999999876332
Q ss_pred eeEecCCccceEEEEeCCCCCCEEEEEeCCCeEEEEEcCCCc---ceeeecccccceeEEEEEEcCCceEEEEEeCCCeE
Q 047355 137 TQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSA---AKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTV 213 (312)
Q Consensus 137 ~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i 213 (312)
. .+. ......++.+.| ...++++|+.|..+++||.+++. ..+++.+|+..|..+.+.+. +...|++|+.|+++
T Consensus 295 ~-~~~-~~ksl~~i~~~~-~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~-~~~~~~S~S~D~t~ 370 (423)
T KOG0313|consen 295 S-TLT-TNKSLNCISYSP-LSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPT-NEFQLVSGSYDNTV 370 (423)
T ss_pred e-eee-cCcceeEeeccc-ccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCC-CceEEEEEecCCeE
Confidence 2 222 234567788888 46899999999999999999764 45678899999999998654 56789999999999
Q ss_pred EEEeCCCCe-EEEEecccccCeEEEEEeCCCcEEEEEeCCCcEEEEeCC
Q 047355 214 KVWDYETKT-CVQILEGHTNNVTAVCFHPELRIIITASEDGTILIWNAT 261 (312)
Q Consensus 214 ~vwd~~~~~-~~~~~~~h~~~i~~l~~~~~~~~l~s~s~dg~v~iwd~~ 261 (312)
++||.++.+ ++..+.+|.+.|.++.|+. +..+++|+.|..|+|+...
T Consensus 371 klWDvRS~k~plydI~~h~DKvl~vdW~~-~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 371 KLWDVRSTKAPLYDIAGHNDKVLSVDWNE-GGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred EEEEeccCCCcceeeccCCceEEEEeccC-CceEEeccCcceEEEeccc
Confidence 999999876 8999999999999999976 4579999999999999754
No 90
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=3.6e-29 Score=193.16 Aligned_cols=247 Identities=19% Similarity=0.259 Sum_probs=202.1
Q ss_pred hhhhcccCcEEEEEEcCCCCeEEEEecCCeEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEecC-----CCeEEE
Q 047355 11 KEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSD-----DKFIRV 85 (312)
Q Consensus 11 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~-----dg~i~i 85 (312)
.+|.+|.+.|++++.+-+.++|++|+.|.++++||.++++.+..+.. ..+|..+.|+.++++++.... .+.|.+
T Consensus 46 Gty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~-~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~ 124 (327)
T KOG0643|consen 46 GTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKT-NSPVKRVDFSFGGNLILASTDKQMGYTCFVSV 124 (327)
T ss_pred eeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeec-CCeeEEEeeccCCcEEEEEehhhcCcceEEEE
Confidence 46889999999999999999999999999999999999998887764 458999999999998877654 368999
Q ss_pred EEcc-------CceeeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCC
Q 047355 86 FDYN-------TMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLN 158 (312)
Q Consensus 86 wd~~-------~~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 158 (312)
+|+. ..++..++..+.++++.+-|.|-+++|++|..||.|.+||.+++.+.+...+.|...+..+.++| +..
T Consensus 125 fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~-d~T 203 (327)
T KOG0643|consen 125 FDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSR-DRT 203 (327)
T ss_pred EEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccC-Ccc
Confidence 9987 34567778888999999999999999999999999999999988788888888999999999998 568
Q ss_pred EEEEEeCCCeEEEEEcCCCcceeeecccccceeEEEEEEcCCceEEEEEeCCC-eEEEEeCCCCe------------EEE
Q 047355 159 TFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDF-TVKVWDYETKT------------CVQ 225 (312)
Q Consensus 159 ~~~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg-~i~vwd~~~~~------------~~~ 225 (312)
+|+++|.|.+-++||.++.+...++.. ..++++.++.+..| ..++.|+.+- .|.-=+.+.++ .+.
T Consensus 204 ~FiT~s~Dttakl~D~~tl~v~Kty~t-e~PvN~aaisP~~d-~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEig 281 (327)
T KOG0643|consen 204 YFITGSKDTTAKLVDVRTLEVLKTYTT-ERPVNTAAISPLLD-HVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIG 281 (327)
T ss_pred eEEecccCccceeeeccceeeEEEeee-cccccceecccccc-eEEecCCceeeeeeeecccccchhhhHHHHHHHHHhc
Confidence 999999999999999999887777644 46788877644333 2333444332 12222223332 234
Q ss_pred EecccccCeEEEEEeCCCcEEEEEeCCCcEEEEeCC
Q 047355 226 ILEGHTNNVTAVCFHPELRIIITASEDGTILIWNAT 261 (312)
Q Consensus 226 ~~~~h~~~i~~l~~~~~~~~l~s~s~dg~v~iwd~~ 261 (312)
.+++|-++|++++|||+|+..++|++||.||+--..
T Consensus 282 rvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 282 RVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred cccccccCcceeEECCCCcccccCCCCceEEEEEec
Confidence 567999999999999999999999999999987543
No 91
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.97 E-value=2.7e-29 Score=206.66 Aligned_cols=248 Identities=24% Similarity=0.423 Sum_probs=203.3
Q ss_pred hcccCcEEEEEEcCCCCe-EEEEecCCeEEEEeccCCce----------eeeEEecCCceeEEEEeeC-CcEEEEecCCC
Q 047355 14 IQKSDRVKSVDFHPTQPW-VLASLYSGTVCIWNYHSQTT----------EKSVKVTDSPVRTAKFVAR-EHWIVCGSDDK 81 (312)
Q Consensus 14 ~~~~~~i~~~~~~~~~~~-l~~~~~dg~v~iw~~~~~~~----------~~~~~~~~~~v~~~~~~~~-~~~l~~g~~dg 81 (312)
.-|.+.|+.+.+.|..+. +++.+..+.|.|||+.+... ...+.+|...-..+.|++. ...|++|+.|+
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~ 200 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH 200 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence 457889999999998765 55667889999999854311 1256677765667788864 45799999999
Q ss_pred eEEEEEccCce-------eeeeecccccceeEEEEecCC-CEEEEEeCCCcEEEEeCCC-CceeeeEecCCccceEEEEe
Q 047355 82 FIRVFDYNTMA-------SVKEFEAHEDYIRSLAVHPTF-PFVLTASDDKLIKLWDWEK-NWECTQTFEGHSHYVMQSAF 152 (312)
Q Consensus 82 ~i~iwd~~~~~-------~~~~~~~h~~~i~~~~~~~~~-~~l~t~s~d~~v~iwd~~~-~~~~~~~~~~~~~~v~~~~~ 152 (312)
+|++||+.... ....+.+|+..|..++|++.. .++++++.|+.+.|||.+. ..++.+...+|...+.++.|
T Consensus 201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~f 280 (422)
T KOG0264|consen 201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAF 280 (422)
T ss_pred cEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEe
Confidence 99999986432 345678999999999999865 5678999999999999985 33556677899999999999
Q ss_pred CCCCCCEEEEEeCCCeEEEEEcCCC-cceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCC----------
Q 047355 153 NPKDLNTFASASLDGTIQIWNMDSS-AAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETK---------- 221 (312)
Q Consensus 153 ~~~~~~~~~s~s~dg~v~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~---------- 221 (312)
+|.+...||+||.|++|.+||+|+. ++..++.+|...|.++.|.+. ....||+++.|+.+.+||+..-
T Consensus 281 np~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh-~etvLASSg~D~rl~vWDls~ig~eq~~eda~ 359 (422)
T KOG0264|consen 281 NPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPH-NETVLASSGTDRRLNVWDLSRIGEEQSPEDAE 359 (422)
T ss_pred CCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCC-CCceeEecccCCcEEEEeccccccccChhhhc
Confidence 9999999999999999999999985 567889999999999998654 4567999999999999998431
Q ss_pred ----eEEEEecccccCeEEEEEeCCCcE-EEEEeCCCcEEEEeCCC
Q 047355 222 ----TCVQILEGHTNNVTAVCFHPELRI-IITASEDGTILIWNATT 262 (312)
Q Consensus 222 ----~~~~~~~~h~~~i~~l~~~~~~~~-l~s~s~dg~v~iwd~~~ 262 (312)
+++..-.||...|..+.|+|..++ +++.+.|+.+.||+...
T Consensus 360 dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 360 DGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred cCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 234666799999999999997764 77999999999999863
No 92
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.97 E-value=3.6e-29 Score=205.90 Aligned_cols=246 Identities=23% Similarity=0.388 Sum_probs=204.5
Q ss_pred ecCCceeEEEEeeCCc-EEEEecCCCeEEEEEccCce----------eeeeecccccceeEEEEecCCC-EEEEEeCCCc
Q 047355 57 VTDSPVRTAKFVAREH-WIVCGSDDKFIRVFDYNTMA----------SVKEFEAHEDYIRSLAVHPTFP-FVLTASDDKL 124 (312)
Q Consensus 57 ~~~~~v~~~~~~~~~~-~l~~g~~dg~i~iwd~~~~~----------~~~~~~~h~~~i~~~~~~~~~~-~l~t~s~d~~ 124 (312)
.|.+.|+.+.+.|+.. .+++++..+.+.|||..+.. +...+.+|++.-++++|++... .+++++.|+.
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~ 201 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT 201 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence 4677888888888654 55677888999999975432 1226789998888999998654 5889999999
Q ss_pred EEEEeCCCCce------eeeEecCCccceEEEEeCCCCCCEEEEEeCCCeEEEEEcC--CCcceeeecccccceeEEEEE
Q 047355 125 IKLWDWEKNWE------CTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMD--SSAAKFTLDAHEKGINCIDYF 196 (312)
Q Consensus 125 v~iwd~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~--~~~~~~~~~~~~~~v~~~~~~ 196 (312)
+.+||++.... +...+.+|...|..++|+|.+..+|++++.|+.+.|||+| +.++.....+|...++|++|-
T Consensus 202 i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fn 281 (422)
T KOG0264|consen 202 ICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFN 281 (422)
T ss_pred EEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeC
Confidence 99999875322 3456889999999999999999999999999999999999 566777889999999999975
Q ss_pred EcCCceEEEEEeCCCeEEEEeCCCC-eEEEEecccccCeEEEEEeCC-CcEEEEEeCCCcEEEEeCCCc-----------
Q 047355 197 ITSDKVYLITGSDDFTVKVWDYETK-TCVQILEGHTNNVTAVCFHPE-LRIIITASEDGTILIWNATTF----------- 263 (312)
Q Consensus 197 ~~~~~~~l~sg~~dg~i~vwd~~~~-~~~~~~~~h~~~i~~l~~~~~-~~~l~s~s~dg~v~iwd~~~~----------- 263 (312)
+ .++..||+||.|++|.+||+++. +++..+.+|...|..|.|+|+ ...||+++.|+++.+||+...
T Consensus 282 p-~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~d 360 (422)
T KOG0264|consen 282 P-FNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAED 360 (422)
T ss_pred C-CCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhcc
Confidence 4 45788999999999999999874 578899999999999999995 578999999999999999753
Q ss_pred ---ceeeecccCccceEEEEEecCCCe-EEEEecCCeEEEEecc
Q 047355 264 ---RLQNTLSSGLERVWSIGYKKGSNQ-VAFGCDNGTLIVKIGN 303 (312)
Q Consensus 264 ---~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~~g~i~v~~~~ 303 (312)
+++..-.+|...|..+.|+|.... |++.++|+.++||-..
T Consensus 361 gppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 361 GPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred CCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 233455677888999999997655 6688999999999654
No 93
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.97 E-value=4.2e-31 Score=228.21 Aligned_cols=258 Identities=21% Similarity=0.404 Sum_probs=226.2
Q ss_pred CCeEEEEecCCeEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEecCCCeEEEEEccCceeeeeecccccceeEEE
Q 047355 29 QPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLA 108 (312)
Q Consensus 29 ~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~ 108 (312)
+..++.+-.+-.+++|+.+.. ..|...+.++..-...+.+++|++|..+-+|.......+..+.+|+.+|.++.
T Consensus 4 ~~~~m~~~~~t~Lr~~~~~~~------~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~ 77 (825)
T KOG0267|consen 4 MEFLMKTKRATKLRVWDTREF------VAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLT 77 (825)
T ss_pred ccccceeeeeeccccccchhh------hhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeee
Confidence 344555555667778876532 33555566666666778899999999999999888777778999999999999
Q ss_pred EecCCCEEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeCCCeEEEEEcCCCcceeeeccccc
Q 047355 109 VHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEK 188 (312)
Q Consensus 109 ~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~~~~ 188 (312)
|++...+|++|+.+|+||+||+... ...+.+.+|...+..+.|+|. ..++++++.|..+.+||.+...+.+.+.+|..
T Consensus 78 f~~~E~LlaagsasgtiK~wDleeA-k~vrtLtgh~~~~~sv~f~P~-~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~ 155 (825)
T KOG0267|consen 78 FDTSERLLAAGSASGTIKVWDLEEA-KIVRTLTGHLLNITSVDFHPY-GEFFASGSTDTDLKIWDIRKKGCSHTYKSHTR 155 (825)
T ss_pred cCcchhhhcccccCCceeeeehhhh-hhhhhhhccccCcceeeeccc-eEEeccccccccceehhhhccCceeeecCCcc
Confidence 9999999999999999999999865 456688899999999999995 57889999999999999999999999999999
Q ss_pred ceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEecccccCeEEEEEeCCCcEEEEEeCCCcEEEEeCCCcceeee
Q 047355 189 GINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITASEDGTILIWNATTFRLQNT 268 (312)
Q Consensus 189 ~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~ 268 (312)
.+.++.+ +|+|++++.|++|..+++||...++....|..|.+.+.++.|+|..-++++||.|++|++||+++++++..
T Consensus 156 vv~~l~l--sP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s 233 (825)
T KOG0267|consen 156 VVDVLRL--SPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISS 233 (825)
T ss_pred eeEEEee--cCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeec
Confidence 9999874 78999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCccceEEEEEecCCCeEEEEecCCe
Q 047355 269 LSSGLERVWSIGYKKGSNQVAFGCDNGT 296 (312)
Q Consensus 269 ~~~~~~~v~~~~~~~~~~~l~~~~~~g~ 296 (312)
.+.....|.+++|+|+++.+.+|.....
T Consensus 234 ~~~~~~~v~~~~fn~~~~~~~~G~q~sl 261 (825)
T KOG0267|consen 234 GKPETDGVRSLAFNPDGKIVLSGEQISL 261 (825)
T ss_pred cCCccCCceeeeecCCceeeecCchhhh
Confidence 8888899999999999999888766543
No 94
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.5e-27 Score=188.45 Aligned_cols=248 Identities=19% Similarity=0.276 Sum_probs=206.4
Q ss_pred ceeeeEEecCCceeEEEEeeCCcEEEEecCCCeEEEEEccCceeeeeecccccceeEEEEecCCCEEEEEeC--CCcEEE
Q 047355 50 TTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASD--DKLIKL 127 (312)
Q Consensus 50 ~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~--d~~v~i 127 (312)
+..+.+......+.++.|+.+|..++++++|-++++||..+++..+.+..+.-.+..+.|......++.++. |.+||.
T Consensus 5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIry 84 (311)
T KOG1446|consen 5 RPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRY 84 (311)
T ss_pred ccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEE
Confidence 445566667789999999999999999999999999999999999998888778888888776677777776 889999
Q ss_pred EeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeCCCeEEEEEcCCCcceeeecccccceeEEEEEEcCCceEEEEE
Q 047355 128 WDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITG 207 (312)
Q Consensus 128 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg 207 (312)
-++.++ +.++.|.||...|..+..+|.+ +.|++++.|++|++||++..++...+.....+ ..+ .+|.|-++|++
T Consensus 85 Lsl~dN-kylRYF~GH~~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~A--fDp~GLifA~~ 158 (311)
T KOG1446|consen 85 LSLHDN-KYLRYFPGHKKRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--IAA--FDPEGLIFALA 158 (311)
T ss_pred EEeecC-ceEEEcCCCCceEEEEEecCCC-CeEEecccCCeEEeeEecCCCCceEEecCCCc--cee--ECCCCcEEEEe
Confidence 998876 6678899999999999999977 89999999999999999977665554433233 233 47889999999
Q ss_pred eCCCeEEEEeCCCC--eEEEEec---ccccCeEEEEEeCCCcEEEEEeCCCcEEEEeCCCcceeeecccCccc---eEEE
Q 047355 208 SDDFTVKVWDYETK--TCVQILE---GHTNNVTAVCFHPELRIIITASEDGTILIWNATTFRLQNTLSSGLER---VWSI 279 (312)
Q Consensus 208 ~~dg~i~vwd~~~~--~~~~~~~---~h~~~i~~l~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~---v~~~ 279 (312)
.....|++||++.. .+-..+. +-..+.+.+.|+|+|+.++.+...+.+++.|.-++.++.++..+... ....
T Consensus 159 ~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a 238 (311)
T KOG1446|consen 159 NGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSA 238 (311)
T ss_pred cCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeE
Confidence 98889999999753 2223332 33567899999999999999999999999999999988888766433 3577
Q ss_pred EEecCCCeEEEEecCCeEEEEecc
Q 047355 280 GYKKGSNQVAFGCDNGTLIVKIGN 303 (312)
Q Consensus 280 ~~~~~~~~l~~~~~~g~i~v~~~~ 303 (312)
.|.||++.+++|++||+|.||..+
T Consensus 239 ~ftPds~Fvl~gs~dg~i~vw~~~ 262 (311)
T KOG1446|consen 239 TFTPDSKFVLSGSDDGTIHVWNLE 262 (311)
T ss_pred EECCCCcEEEEecCCCcEEEEEcC
Confidence 799999999999999999999875
No 95
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=2.9e-28 Score=200.90 Aligned_cols=282 Identities=20% Similarity=0.337 Sum_probs=225.0
Q ss_pred cCcEEEEEEcCCCCeEEEEecCCeEEEEeccCC--ceeeeEEecCCceeEEEEeeCCc-EEEEecCCCeEEEEEccCcee
Q 047355 17 SDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQ--TTEKSVKVTDSPVRTAKFVAREH-WIVCGSDDKFIRVFDYNTMAS 93 (312)
Q Consensus 17 ~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~--~~~~~~~~~~~~v~~~~~~~~~~-~l~~g~~dg~i~iwd~~~~~~ 93 (312)
..+|+++.|||..+.|++++.|++++||.++.. ..++++.....||..+.|.|+|+ .+++++.-..++.||+.+.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 468999999999999999999999999988754 45567777889999999999999 899999999999999988754
Q ss_pred ee--eecccc-cceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeCCCeEE
Q 047355 94 VK--EFEAHE-DYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQ 170 (312)
Q Consensus 94 ~~--~~~~h~-~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~ 170 (312)
.+ ...++. ..+....++|++++|+..+..|.|.+--..+. +.+..+. -...+..+.|+. ++..+++++.+|.|.
T Consensus 293 ~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~-eli~s~K-ieG~v~~~~fsS-dsk~l~~~~~~GeV~ 369 (514)
T KOG2055|consen 293 TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTK-ELITSFK-IEGVVSDFTFSS-DSKELLASGGTGEVY 369 (514)
T ss_pred ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhh-hhhheee-eccEEeeEEEec-CCcEEEEEcCCceEE
Confidence 33 333443 34677889999999999999999999865543 2233222 234567778885 568888888999999
Q ss_pred EEEcCCCcceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCC------CCeEEEEecccccCeEEEEEeCCCc
Q 047355 171 IWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYE------TKTCVQILEGHTNNVTAVCFHPELR 244 (312)
Q Consensus 171 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~------~~~~~~~~~~h~~~i~~l~~~~~~~ 244 (312)
+||++...+...+.. +.++....+.++.++.|+|+|+..|.|.+||.. +.++++.+..-...|+++.|+|+.+
T Consensus 370 v~nl~~~~~~~rf~D-~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~q 448 (514)
T KOG2055|consen 370 VWNLRQNSCLHRFVD-DGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQ 448 (514)
T ss_pred EEecCCcceEEEEee-cCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchh
Confidence 999999877766543 345555556678899999999999999999954 3466777777778899999999999
Q ss_pred EEEEEeC--CCcEEEEeCCCcceeeec---ccCccceEEEEEecCCCeEEEEecCCeEEEEec
Q 047355 245 IIITASE--DGTILIWNATTFRLQNTL---SSGLERVWSIGYKKGSNQVAFGCDNGTLIVKIG 302 (312)
Q Consensus 245 ~l~s~s~--dg~v~iwd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~~g~i~v~~~ 302 (312)
+||-+|. +..+|+--+++...-..+ ......|.|++|+|.+.+||.|.++|++.+|-.
T Consensus 449 iLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL 511 (514)
T KOG2055|consen 449 ILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKL 511 (514)
T ss_pred hhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEee
Confidence 9887764 567888888775544433 344577999999999999999999999998854
No 96
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=6.3e-29 Score=189.50 Aligned_cols=248 Identities=23% Similarity=0.381 Sum_probs=197.1
Q ss_pred ecCCceeEEEEeeCCcEEEEecCCCeEEEEEccCc---eeeeeecccccceeEEEEec--CCCEEEEEeCCCcEEEEeCC
Q 047355 57 VTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTM---ASVKEFEAHEDYIRSLAVHP--TFPFVLTASDDKLIKLWDWE 131 (312)
Q Consensus 57 ~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~---~~~~~~~~h~~~i~~~~~~~--~~~~l~t~s~d~~v~iwd~~ 131 (312)
.|+..|..+...--++.|++++.|++|+++..+.. ..+.++.+|++||..++|-. .|.+|++++.||.|.||.-.
T Consensus 9 ~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~ 88 (299)
T KOG1332|consen 9 QHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEE 88 (299)
T ss_pred hhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecC
Confidence 35555555555556889999999999999998764 45678899999999999954 78999999999999999855
Q ss_pred CC-ceeeeEecCCccceEEEEeCCCCCC-EEEEEeCCCeEEEEEcCCC---cceeeecccccceeEEEEEEcCC-c----
Q 047355 132 KN-WECTQTFEGHSHYVMQSAFNPKDLN-TFASASLDGTIQIWNMDSS---AAKFTLDAHEKGINCIDYFITSD-K---- 201 (312)
Q Consensus 132 ~~-~~~~~~~~~~~~~v~~~~~~~~~~~-~~~s~s~dg~v~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~-~---- 201 (312)
++ ......+..|...|.+++|.|.+.. .|+.++.||.|.+.+.++. .......+|+.+++++++.+..- |
T Consensus 89 ~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~ 168 (299)
T KOG1332|consen 89 NGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVD 168 (299)
T ss_pred CCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccc
Confidence 43 2233456789999999999998755 5677889999999999875 22345678999999998865421 2
Q ss_pred -------eEEEEEeCCCeEEEEeCCCC--eEEEEecccccCeEEEEEeCCC----cEEEEEeCCCcEEEEeCCCc-c--e
Q 047355 202 -------VYLITGSDDFTVKVWDYETK--TCVQILEGHTNNVTAVCFHPEL----RIIITASEDGTILIWNATTF-R--L 265 (312)
Q Consensus 202 -------~~l~sg~~dg~i~vwd~~~~--~~~~~~~~h~~~i~~l~~~~~~----~~l~s~s~dg~v~iwd~~~~-~--~ 265 (312)
+.|++|+.|..|++|+..++ +..+.|.+|.+.|+.++|.|.- .+||++|.||+|.||....- + .
T Consensus 169 ~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk 248 (299)
T KOG1332|consen 169 QGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWK 248 (299)
T ss_pred cCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCccc
Confidence 56999999999999998764 4556789999999999999963 57999999999999976521 1 1
Q ss_pred eeecccCccceEEEEEecCCCeEEEEecCCeEEEEeccC
Q 047355 266 QNTLSSGLERVWSIGYKKGSNQVAFGCDNGTLIVKIGNS 304 (312)
Q Consensus 266 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~v~~~~~ 304 (312)
...++.-...+|.+.||+.|+.|+.++.|+.+.+|..+-
T Consensus 249 ~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 249 KTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred ccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 122333456699999999999999999999999998764
No 97
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=5.9e-29 Score=202.37 Aligned_cols=247 Identities=19% Similarity=0.317 Sum_probs=204.9
Q ss_pred hhhhhhhhcccCcEEEEEEcCCCCeEEEEecCCeEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEecCCCeEEEE
Q 047355 7 LQIEKEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVF 86 (312)
Q Consensus 7 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iw 86 (312)
..+...+.+..+.|+++.|.+++.++++++.|+.+++|+.+..+...++.+|...|+++.|......+++|+.|.+|+.|
T Consensus 209 ~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~W 288 (459)
T KOG0288|consen 209 SELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLW 288 (459)
T ss_pred hhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhh
Confidence 34556677778899999999999999999999999999999999999999999999999999877779999999999999
Q ss_pred EccCceeeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeCC
Q 047355 87 DYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLD 166 (312)
Q Consensus 87 d~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d 166 (312)
|+.+..+.+++-. ...+.+|..+ ...+++|-.|+.|++||.+.. ........+. .+.++..++ ++..+++++.|
T Consensus 289 Dl~k~~C~kt~l~-~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~-~~~~sv~~gg-~vtSl~ls~-~g~~lLsssRD 362 (459)
T KOG0288|consen 289 DLQKAYCSKTVLP-GSQCNDIVCS--ISDVISGHFDKKVRFWDIRSA-DKTRSVPLGG-RVTSLDLSM-DGLELLSSSRD 362 (459)
T ss_pred hhhhhheeccccc-cccccceEec--ceeeeecccccceEEEeccCC-ceeeEeecCc-ceeeEeecc-CCeEEeeecCC
Confidence 9999887776543 2345666655 455889999999999998765 3344444444 788888887 45788888999
Q ss_pred CeEEEEEcCCCcceeeeccccc--ceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEecccccC--eEEEEEeCC
Q 047355 167 GTIQIWNMDSSAAKFTLDAHEK--GINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNN--VTAVCFHPE 242 (312)
Q Consensus 167 g~v~iwd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~--i~~l~~~~~ 242 (312)
.++.+.|+++......+.+... +-......++|++.|+++||.||.|++|+..++++.+.+....++ |++++|+|.
T Consensus 363 dtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~s 442 (459)
T KOG0288|consen 363 DTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPS 442 (459)
T ss_pred CceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCC
Confidence 9999999999888777654321 111223457999999999999999999999999999988766555 999999999
Q ss_pred CcEEEEEeCCCcEEEEe
Q 047355 243 LRIIITASEDGTILIWN 259 (312)
Q Consensus 243 ~~~l~s~s~dg~v~iwd 259 (312)
|..+++++.++.+.+|.
T Consensus 443 G~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 443 GSGLLSADKQKAVTLWT 459 (459)
T ss_pred CchhhcccCCcceEecC
Confidence 99999999999999993
No 98
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.97 E-value=6.7e-28 Score=197.42 Aligned_cols=240 Identities=21% Similarity=0.335 Sum_probs=205.7
Q ss_pred ceeEEEEeeCCcEEEEecCCCeEEEEEccCceeeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEe
Q 047355 61 PVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTF 140 (312)
Q Consensus 61 ~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~ 140 (312)
.+.++...+....+++|+.|..+.++|..+.+.+..+++|...|+.+.++|+...+++++.|..|++|..... ......
T Consensus 221 gi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~-s~~~~~ 299 (506)
T KOG0289|consen 221 GITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLS-SEPTSS 299 (506)
T ss_pred CeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccc-cCcccc
Confidence 4556666666678999999999999999999999999999999999999999999999999999999997654 344567
Q ss_pred cCCccceEEEEeCCCCCCEEEEEeCCCeEEEEEcCCCcceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCC
Q 047355 141 EGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYET 220 (312)
Q Consensus 141 ~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~ 220 (312)
..|..+|..+..+|. +.+|++++.|++.-+.|++++............|.-....+.|||.++.+|..|+.|++||+.+
T Consensus 300 ~~h~~~V~~ls~h~t-geYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks 378 (506)
T KOG0289|consen 300 RPHEEPVTGLSLHPT-GEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKS 378 (506)
T ss_pred ccccccceeeeeccC-CcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCC
Confidence 789999999999985 5899999999999999999988766554433333333334689999999999999999999999
Q ss_pred CeEEEEecccccCeEEEEEeCCCcEEEEEeCCCcEEEEeCCCcceeeecccCc-cceEEEEEecCCCeEEEEecCCeEEE
Q 047355 221 KTCVQILEGHTNNVTAVCFHPELRIIITASEDGTILIWNATTFRLQNTLSSGL-ERVWSIGYKKGSNQVAFGCDNGTLIV 299 (312)
Q Consensus 221 ~~~~~~~~~h~~~i~~l~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~g~i~v 299 (312)
......+.+|.++|..++|+.+|.+||+++.|+.|++||++..+..+++.... ..+.++.|.+.|++|+.++.+=+|++
T Consensus 379 ~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~ 458 (506)
T KOG0289|consen 379 QTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYI 458 (506)
T ss_pred ccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEE
Confidence 98899999999999999999999999999999999999999877766665443 36899999999999999987777776
Q ss_pred Eec
Q 047355 300 KIG 302 (312)
Q Consensus 300 ~~~ 302 (312)
...
T Consensus 459 ~~k 461 (506)
T KOG0289|consen 459 CKK 461 (506)
T ss_pred Eec
Confidence 653
No 99
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=4.3e-29 Score=196.64 Aligned_cols=248 Identities=23% Similarity=0.409 Sum_probs=192.7
Q ss_pred hhhhhhcccCcEEEEEEcCCCCeEEEEecCCeEEEEeccCCceeeeEEe--cCCceeEEEEeeCCcEEEEecCCCeEEEE
Q 047355 9 IEKEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKV--TDSPVRTAKFVAREHWIVCGSDDKFIRVF 86 (312)
Q Consensus 9 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~g~~dg~i~iw 86 (312)
.+|+|-.|.++|+.+.|||....|++|+.|++|++||+.+....+.++. ...+++++.|+|.|++|+.|....++++|
T Consensus 164 vIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlY 243 (430)
T KOG0640|consen 164 VIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLY 243 (430)
T ss_pred eEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEE
Confidence 4567888999999999999999999999999999999976544433332 23589999999999999999999999999
Q ss_pred EccCceeeee---ecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEe-cCCc-cceEEEEeCCCCCCEEE
Q 047355 87 DYNTMASVKE---FEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTF-EGHS-HYVMQSAFNPKDLNTFA 161 (312)
Q Consensus 87 d~~~~~~~~~---~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~-~~~~-~~v~~~~~~~~~~~~~~ 161 (312)
|+++.++.-. -.+|++.|+++.+++.+++.+|+|.||.||+||--.+ .++.++ ..|. ..|.+..|.. ++.+++
T Consensus 244 dv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~-rCv~t~~~AH~gsevcSa~Ftk-n~kyiL 321 (430)
T KOG0640|consen 244 DVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSN-RCVRTIGNAHGGSEVCSAVFTK-NGKYIL 321 (430)
T ss_pred eccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccH-HHHHHHHhhcCCceeeeEEEcc-CCeEEe
Confidence 9999765432 2579999999999999999999999999999996543 444444 3454 3566777764 678999
Q ss_pred EEeCCCeEEEEEcCCCcceeeecccc--c--ceeEEEEEEcCCceEEE-EEeCCCeEEEEeCCCCeEEEEe-cccccCeE
Q 047355 162 SASLDGTIQIWNMDSSAAKFTLDAHE--K--GINCIDYFITSDKVYLI-TGSDDFTVKVWDYETKTCVQIL-EGHTNNVT 235 (312)
Q Consensus 162 s~s~dg~v~iwd~~~~~~~~~~~~~~--~--~v~~~~~~~~~~~~~l~-sg~~dg~i~vwd~~~~~~~~~~-~~h~~~i~ 235 (312)
+.+.|..+++|++.++..+....+-. + ....-+. +...+.|++ ---..+.+.-||.++......+ .+|++.++
T Consensus 322 sSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAv-FNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R 400 (430)
T KOG0640|consen 322 SSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAV-FNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVR 400 (430)
T ss_pred ecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhh-hcCccceEEccccccCceeeccccchhhhhhcccCCCCCce
Confidence 99999999999999998887665421 0 0011111 122222322 2334567889999987655444 58999999
Q ss_pred EEEEeCCCcEEEEEeCCCcEEEEe
Q 047355 236 AVCFHPELRIIITASEDGTILIWN 259 (312)
Q Consensus 236 ~l~~~~~~~~l~s~s~dg~v~iwd 259 (312)
.+..+|.++.+.+|+.|.++|+|-
T Consensus 401 ~i~HSP~~p~FmTcsdD~raRFWy 424 (430)
T KOG0640|consen 401 WIVHSPVEPAFMTCSDDFRARFWY 424 (430)
T ss_pred EEEeCCCCCceeeecccceeeeee
Confidence 999999999999999999999995
No 100
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=3.5e-28 Score=200.33 Aligned_cols=238 Identities=18% Similarity=0.281 Sum_probs=200.4
Q ss_pred cccCcEEEEEEcCCCCeEEEEecCCeEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEecCCCeEEEEEccCceee
Q 047355 15 QKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASV 94 (312)
Q Consensus 15 ~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~ 94 (312)
.|.+.|.+++.+|||++|++|+.|..|.||+.++.+.++.+..|.+.|.+++|-.....+++++.|+++++|+++....+
T Consensus 200 ~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~v 279 (479)
T KOG0299|consen 200 GHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYV 279 (479)
T ss_pred cccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHH
Confidence 78889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeCCCeEEEEEc
Q 047355 95 KEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNM 174 (312)
Q Consensus 95 ~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~ 174 (312)
.++-+|.+.|.++....-++.+..|+.|+++++|++.. +....|.++...+-+++|-. ...|++||.||.|.+|++
T Consensus 280 etlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~e--esqlifrg~~~sidcv~~In--~~HfvsGSdnG~IaLWs~ 355 (479)
T KOG0299|consen 280 ETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPE--ESQLIFRGGEGSIDCVAFIN--DEHFVSGSDNGSIALWSL 355 (479)
T ss_pred HHHhCCccceeeechhcccceEEeccccceeEEEeccc--cceeeeeCCCCCeeeEEEec--ccceeeccCCceEEEeee
Confidence 99999999999999988888888888999999999843 44456788888888888874 478999999999999999
Q ss_pred CCCcceeeec-ccc-----------cceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCC----eEEEEecccccCeEEEE
Q 047355 175 DSSAAKFTLD-AHE-----------KGINCIDYFITSDKVYLITGSDDFTVKVWDYETK----TCVQILEGHTNNVTAVC 238 (312)
Q Consensus 175 ~~~~~~~~~~-~~~-----------~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~----~~~~~~~~h~~~i~~l~ 238 (312)
...+++++.. +|. ..++.++. .+...++++|+.+|.|++|-++.+ .++..+. -.+.|++|+
T Consensus 356 ~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~--i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~ 432 (479)
T KOG0299|consen 356 LKKKPLFTSRLAHGVIPELDPVNGNFWITSLAV--IPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLA 432 (479)
T ss_pred cccCceeEeeccccccCCccccccccceeeeEe--cccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEE
Confidence 9888876542 221 25666664 455668999999999999998765 3445554 567899999
Q ss_pred EeCCCcEEEEE-eCCCcEEEEe
Q 047355 239 FHPELRIIITA-SEDGTILIWN 259 (312)
Q Consensus 239 ~~~~~~~l~s~-s~dg~v~iwd 259 (312)
|+++++.+++| +..-.+--|-
T Consensus 433 f~~sgk~ivagiGkEhRlGRW~ 454 (479)
T KOG0299|consen 433 FSNSGKRIVAGIGKEHRLGRWW 454 (479)
T ss_pred EccCCCEEEEecccccccceee
Confidence 99999965555 4444444443
No 101
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.3e-28 Score=194.57 Aligned_cols=250 Identities=21% Similarity=0.345 Sum_probs=205.5
Q ss_pred hhhhhhcccCcEEEEEEcCCCCeEEEEecCCeEEEEec------cCC---------------------------------
Q 047355 9 IEKEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNY------HSQ--------------------------------- 49 (312)
Q Consensus 9 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~------~~~--------------------------------- 49 (312)
+..+|.+|.+.|+++.|||.+..+++++.|++..||.. .+.
T Consensus 182 CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~ti 261 (481)
T KOG0300|consen 182 CLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTI 261 (481)
T ss_pred ceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCcee
Confidence 34579999999999999999999999999999999972 110
Q ss_pred -ceeeeEEecCCceeEEEEeeCCcEEEEecCCCeEEEEEccCceeeeeecccccceeEEEEecCCCEEEEEeCCCcEEEE
Q 047355 50 -TTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLW 128 (312)
Q Consensus 50 -~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iw 128 (312)
.++..+.+|.+.|.++.|...++.+++|++|.+-.+||+++++.++.+.+|..+.+.++-+|..+++++.+.|.+.++|
T Consensus 262 RvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLW 341 (481)
T KOG0300|consen 262 RVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLW 341 (481)
T ss_pred eeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEec
Confidence 0112345677788888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeCCCeEEEEEcCCCcceeeecccccceeEEEEEEcCCceEEEEEe
Q 047355 129 DWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGS 208 (312)
Q Consensus 129 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~ 208 (312)
|.+..-.....|++|...|.++.|+.. ..+++|+.|.+|++||+++........--..+++-++. +..+..|+.--
T Consensus 342 DFReaI~sV~VFQGHtdtVTS~vF~~d--d~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvav--s~g~~iIAiPh 417 (481)
T KOG0300|consen 342 DFREAIQSVAVFQGHTDTVTSVVFNTD--DRVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAV--SKGHPIIAIPH 417 (481)
T ss_pred cchhhcceeeeecccccceeEEEEecC--CceeecCCCceEEEeeeccccCcceeeecCCccceeEe--ecCCceEEecc
Confidence 998776777889999999999999864 57999999999999999987543322222345555553 44456788888
Q ss_pred CCCeEEEEeCCCCeEEE----EecccccCeEEEEEeCCCc--EEEEEeCCCcEEEEeCCC
Q 047355 209 DDFTVKVWDYETKTCVQ----ILEGHTNNVTAVCFHPELR--IIITASEDGTILIWNATT 262 (312)
Q Consensus 209 ~dg~i~vwd~~~~~~~~----~~~~h~~~i~~l~~~~~~~--~l~s~s~dg~v~iwd~~~ 262 (312)
++..|++||+....+.. .-++|...|+|++|..+.. -|++++-|+.+.-|++.+
T Consensus 418 DNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~ 477 (481)
T KOG0300|consen 418 DNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINT 477 (481)
T ss_pred CCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEecc
Confidence 89999999996543322 3358999999999976543 488999999999999865
No 102
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=4.3e-28 Score=209.60 Aligned_cols=289 Identities=18% Similarity=0.253 Sum_probs=232.1
Q ss_pred hhcccCcEEEEEEcCC-----------CCeEEEEecCCeEEEEeccCCceeeeE--------------------------
Q 047355 13 FIQKSDRVKSVDFHPT-----------QPWVLASLYSGTVCIWNYHSQTTEKSV-------------------------- 55 (312)
Q Consensus 13 ~~~~~~~i~~~~~~~~-----------~~~l~~~~~dg~v~iw~~~~~~~~~~~-------------------------- 55 (312)
+.-|+..|+.+.--|. ..-+.++++|++||+|+++....-..+
T Consensus 365 ~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~ 444 (1080)
T KOG1408|consen 365 MLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDAS 444 (1080)
T ss_pred eeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhcc
Confidence 3345666666655441 124678999999999998762111100
Q ss_pred -----------EecCCceeEEEEeeCCcEEEEecCCCeEEEEEccCceeeeeecccccceeEEEEec---CCCEEEEEeC
Q 047355 56 -----------KVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHP---TFPFVLTASD 121 (312)
Q Consensus 56 -----------~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~---~~~~l~t~s~ 121 (312)
-.....+++++.+|++++|++|..-|++++|++...+....++.|+.+|.|+.++. ..++|++++.
T Consensus 445 ~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasr 524 (1080)
T KOG1408|consen 445 AGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASR 524 (1080)
T ss_pred CCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccC
Confidence 00123688999999999999999999999999999888889999999999999974 3468999999
Q ss_pred CCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCC-CEEEEEeCCCeEEEEEcCCCcceeeecccc-----cceeEEEE
Q 047355 122 DKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDL-NTFASASLDGTIQIWNMDSSAAKFTLDAHE-----KGINCIDY 195 (312)
Q Consensus 122 d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~s~s~dg~v~iwd~~~~~~~~~~~~~~-----~~v~~~~~ 195 (312)
|..|.+||+..+..+.+++.+|...|.++.|.-.+. ..+++++.|..|.+=-.+.......+..|. ..++. .
T Consensus 525 dRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYD--m 602 (1080)
T KOG1408|consen 525 DRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYD--M 602 (1080)
T ss_pred CceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEE--e
Confidence 999999999998888999999999999999976553 468999999876543222222222232222 22333 3
Q ss_pred EEcCCceEEEEEeCCCeEEEEeCCCCeEEEEecc---cccCeEEEEEeCCCcEEEEEeCCCcEEEEeCCCcceeeecccC
Q 047355 196 FITSDKVYLITGSDDFTVKVWDYETKTCVQILEG---HTNNVTAVCFHPELRIIITASEDGTILIWNATTFRLQNTLSSG 272 (312)
Q Consensus 196 ~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~---h~~~i~~l~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~ 272 (312)
...|...++++++.|.+|++|++++++..+.+++ |.+..-.+...|.+-++|+...|.++.++|..+++...++.+|
T Consensus 603 ~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GH 682 (1080)
T KOG1408|consen 603 AVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGH 682 (1080)
T ss_pred eeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCc
Confidence 4577888999999999999999999999998864 5667778899999999999999999999999999999999999
Q ss_pred ccceEEEEEecCCCeEEEEecCCeEEEEecc
Q 047355 273 LERVWSIGYKKGSNQVAFGCDNGTLIVKIGN 303 (312)
Q Consensus 273 ~~~v~~~~~~~~~~~l~~~~~~g~i~v~~~~ 303 (312)
.+-|..+.|.+|=++|++.+.||.|.||...
T Consensus 683 sE~VTG~kF~nDCkHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 683 SEAVTGVKFLNDCKHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred chheeeeeecccchhheeecCCceEEEEECc
Confidence 9999999999999999999999999999753
No 103
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1.1e-26 Score=205.94 Aligned_cols=279 Identities=21% Similarity=0.311 Sum_probs=224.2
Q ss_pred cccCcEEEEEEcCCCCeEEEEecCCeEEEEeccCC-ceeeeEEecCCceeEEEEeeCCcEEEEecCCCeEEEEEccCcee
Q 047355 15 QKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQ-TTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMAS 93 (312)
Q Consensus 15 ~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~ 93 (312)
.|......|+|.|+|.+|++++.||.|++|+.... +...++..+...+.+++. .+..+++|+.+++|.+|...+++.
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~~ 88 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGEE 88 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee--cccceEEeeccceEEEeeCCCCCc
Confidence 56677999999999999999999999999986544 444444445555555544 345899999999999999988876
Q ss_pred eeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeCCCeEEEEE
Q 047355 94 VKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWN 173 (312)
Q Consensus 94 ~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd 173 (312)
...+..-+-++++++++.+|++++.||.|-.|++-+.... .....+.+|..+|.++.|+|+ +++|++.+.||.|++||
T Consensus 89 ~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~-s~~~~lrgh~apVl~l~~~p~-~~fLAvss~dG~v~iw~ 166 (933)
T KOG1274|consen 89 DTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDS-SQEKVLRGHDAPVLQLSYDPK-GNFLAVSSCDGKVQIWD 166 (933)
T ss_pred cceeeeeeccceEEEEecCCcEEEeecCceeEEEEecccc-chheeecccCCceeeeeEcCC-CCEEEEEecCceEEEEE
Confidence 6566666788999999999999999999999999997654 445678999999999999995 58999999999999999
Q ss_pred cCCCcceeeeccccc------ceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEecc--cccCeEEEEEeCCCcE
Q 047355 174 MDSSAAKFTLDAHEK------GINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEG--HTNNVTAVCFHPELRI 245 (312)
Q Consensus 174 ~~~~~~~~~~~~~~~------~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~--h~~~i~~l~~~~~~~~ 245 (312)
+.++....++.+-.. .--+....+.|++..++..+.|+.|++|+..+......+.. |.+.+..+.|+|.|+|
T Consensus 167 ~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~Y 246 (933)
T KOG1274|consen 167 LQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKY 246 (933)
T ss_pred cccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcE
Confidence 998877665543211 11122234578877788888999999999988887776653 3445999999999999
Q ss_pred EEEEeCCCcEEEEeCCCcceeeecccCccceEEEEEecCCCeEEEEecCCeEEEEe
Q 047355 246 IITASEDGTILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGCDNGTLIVKI 301 (312)
Q Consensus 246 l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~v~~ 301 (312)
||+++-||.|.|||..+.+. ......|-+++|.|+.+.|..-...|...++.
T Consensus 247 iAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~~ 298 (933)
T KOG1274|consen 247 IAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANAITLITALGTLGVSP 298 (933)
T ss_pred EeeeccCCcEEEEecccchh----ccccceeEEEecCCCCCeeEEEeeccccccCh
Confidence 99999999999999987322 33456799999999999999888888766543
No 104
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=2.3e-27 Score=182.57 Aligned_cols=244 Identities=18% Similarity=0.234 Sum_probs=198.8
Q ss_pred eeEEecCCceeEEEEeeCCcEEEEecCCCeEEEEEccCceeee--eecccccceeEEEEecC-CCEEEEEeCCCcEEEEe
Q 047355 53 KSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVK--EFEAHEDYIRSLAVHPT-FPFVLTASDDKLIKLWD 129 (312)
Q Consensus 53 ~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~--~~~~h~~~i~~~~~~~~-~~~l~t~s~d~~v~iwd 129 (312)
+.++.+...+.+++|+.+|..|++|+.|+++.+|+++.....+ ...+|.+.|-.++|+|. ...+++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 3455677889999999999999999999999999998765444 35789999999999875 46788999999999999
Q ss_pred CCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeCCCeEEEEEcCCCcceeeecccccceeEEEEEEcCCceEEEEEeC
Q 047355 130 WEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSD 209 (312)
Q Consensus 130 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~ 209 (312)
.+.... .......... ....|+|. +++++++..|..|.+.|.++.+.....+-. ..++.+.|. . ++.+++.-..
T Consensus 94 ~r~~k~-~~~i~~~~en-i~i~wsp~-g~~~~~~~kdD~it~id~r~~~~~~~~~~~-~e~ne~~w~-~-~nd~Fflt~G 167 (313)
T KOG1407|consen 94 IRSGKC-TARIETKGEN-INITWSPD-GEYIAVGNKDDRITFIDARTYKIVNEEQFK-FEVNEISWN-N-SNDLFFLTNG 167 (313)
T ss_pred eccCcE-EEEeeccCcc-eEEEEcCC-CCEEEEecCcccEEEEEecccceeehhccc-ceeeeeeec-C-CCCEEEEecC
Confidence 987643 3333322222 34678885 589999999999999999987765543322 334555654 2 3344555556
Q ss_pred CCeEEEEeCCCCeEEEEecccccCeEEEEEeCCCcEEEEEeCCCcEEEEeCCCcceeeecccCccceEEEEEecCCCeEE
Q 047355 210 DFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITASEDGTILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVA 289 (312)
Q Consensus 210 dg~i~vwd~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 289 (312)
.|.|.+-.....+++..+.+|.....||.|+|+|+++|+|+.|..+-+||+...-....+..+.-+|..+.|+-||++||
T Consensus 168 lG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lA 247 (313)
T KOG1407|consen 168 LGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLA 247 (313)
T ss_pred CceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceee
Confidence 79999999989999999999999999999999999999999999999999998888888888889999999999999999
Q ss_pred EEecCCeEEEEec
Q 047355 290 FGCDNGTLIVKIG 302 (312)
Q Consensus 290 ~~~~~g~i~v~~~ 302 (312)
+|++|.-|-|+--
T Consensus 248 SaSEDh~IDIA~v 260 (313)
T KOG1407|consen 248 SASEDHFIDIAEV 260 (313)
T ss_pred ccCccceEEeEec
Confidence 9999998876643
No 105
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=9.9e-28 Score=208.88 Aligned_cols=277 Identities=20% Similarity=0.350 Sum_probs=215.3
Q ss_pred cCcEEEEEEcCCCCeEEEEecCCeEEEEeccCCce--eeeEE--e---cCCceeEEEEee-CCcEEEEecCCCeEEEEEc
Q 047355 17 SDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTT--EKSVK--V---TDSPVRTAKFVA-REHWIVCGSDDKFIRVFDY 88 (312)
Q Consensus 17 ~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~--~~~~~--~---~~~~v~~~~~~~-~~~~l~~g~~dg~i~iwd~ 88 (312)
+....+|+..++-..++.++. ..+.++.+..... ..... . ....+..++|.. ..++|++++..|.|.+||+
T Consensus 39 k~~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdl 117 (839)
T KOG0269|consen 39 KAKANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDL 117 (839)
T ss_pred ccccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEec
Confidence 457788888888877776654 4566776543211 11111 1 112344555653 4678999999999999999
Q ss_pred cC---ceeeeeecccccceeEEEEecCCC-EEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEe
Q 047355 89 NT---MASVKEFEAHEDYIRSLAVHPTFP-FVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASAS 164 (312)
Q Consensus 89 ~~---~~~~~~~~~h~~~i~~~~~~~~~~-~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s 164 (312)
.. .+.+..+..|+..++++.||+... +|++||.||.||+||++.. ....++.+....+..+.|+|..++.|+++.
T Consensus 118 nk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~-~S~~t~~~nSESiRDV~fsp~~~~~F~s~~ 196 (839)
T KOG0269|consen 118 NKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSK-KSKSTFRSNSESIRDVKFSPGYGNKFASIH 196 (839)
T ss_pred CccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecc-cccccccccchhhhceeeccCCCceEEEec
Confidence 87 456667899999999999999765 5779999999999999865 445667778889999999999999999999
Q ss_pred CCCeEEEEEcCCC-cceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCe--EEEEecccccCeEEEEEeC
Q 047355 165 LDGTIQIWNMDSS-AAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKT--CVQILEGHTNNVTAVCFHP 241 (312)
Q Consensus 165 ~dg~v~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~--~~~~~~~h~~~i~~l~~~~ 241 (312)
..|.+++||++.. ++...+.+|.++|.|++| .|++.+||+|+.|++|++||+.+.+ ...++. ...+|..|.|-|
T Consensus 197 dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nw--hPnr~~lATGGRDK~vkiWd~t~~~~~~~~tIn-Tiapv~rVkWRP 273 (839)
T KOG0269|consen 197 DSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNW--HPNREWLATGGRDKMVKIWDMTDSRAKPKHTIN-TIAPVGRVKWRP 273 (839)
T ss_pred CCceEEEeeccCchhHHHHhhcccCceEEEee--cCCCceeeecCCCccEEEEeccCCCccceeEEe-ecceeeeeeecc
Confidence 9999999999864 566788999999999997 4689999999999999999997543 233333 356899999999
Q ss_pred CCc-EEEEEe--CCCcEEEEeCCC-cceeeecccCccceEEEEEec-CCCeEEEEecCCeEE
Q 047355 242 ELR-IIITAS--EDGTILIWNATT-FRLQNTLSSGLERVWSIGYKK-GSNQVAFGCDNGTLI 298 (312)
Q Consensus 242 ~~~-~l~s~s--~dg~v~iwd~~~-~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~g~i~ 298 (312)
..+ .||+++ .|-.|+|||++. +-+..++..|...+..++|.. |...|.+++.||++.
T Consensus 274 ~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~ 335 (839)
T KOG0269|consen 274 ARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVL 335 (839)
T ss_pred CccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHH
Confidence 765 466665 477899999976 445677888989999999964 677888999999864
No 106
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=5e-29 Score=215.42 Aligned_cols=244 Identities=24% Similarity=0.431 Sum_probs=220.2
Q ss_pred hhhhhhhhhcccCcEEEEEEcCCCCeEEEEecCCeEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEecCCCeEEE
Q 047355 6 ELQIEKEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRV 85 (312)
Q Consensus 6 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~i 85 (312)
.+.-.+++..|+..|.++-.-..++.+++|++|..+-+|.......+..+..|+.+|.++.|.+....|++|+.+|+|++
T Consensus 17 r~~~~~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~ 96 (825)
T KOG0267|consen 17 RVWDTREFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKV 96 (825)
T ss_pred ccccchhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceee
Confidence 33334678889999999988778899999999999999999877777789999999999999999999999999999999
Q ss_pred EEccCceeeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeC
Q 047355 86 FDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASL 165 (312)
Q Consensus 86 wd~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~ 165 (312)
||++..+.++.+.+|...+.++.|+|.+.+.+.|+.|+.+++||.+.. .+.+.+.+|...+..+.|.| ++.++++++.
T Consensus 97 wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~-Gc~~~~~s~~~vv~~l~lsP-~Gr~v~~g~e 174 (825)
T KOG0267|consen 97 WDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKK-GCSHTYKSHTRVVDVLRLSP-DGRWVASGGE 174 (825)
T ss_pred eehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhcc-CceeeecCCcceeEEEeecC-CCceeeccCC
Confidence 999999999999999999999999999999999999999999998754 66788889999999999999 4579999999
Q ss_pred CCeEEEEEcCCCcceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEecccccCeEEEEEeCCCcE
Q 047355 166 DGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRI 245 (312)
Q Consensus 166 dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~i~~l~~~~~~~~ 245 (312)
|.+++|||+..++....+..|+..+..+++ .+....+++|+.|++|++||+++.+.+.........|.+++|+|++..
T Consensus 175 d~tvki~d~~agk~~~ef~~~e~~v~sle~--hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~ 252 (825)
T KOG0267|consen 175 DNTVKIWDLTAGKLSKEFKSHEGKVQSLEF--HPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKI 252 (825)
T ss_pred cceeeeeccccccccccccccccccccccc--CchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCcee
Confidence 999999999999999899999999998884 567788999999999999999999888887777888999999999999
Q ss_pred EEEEeCCC
Q 047355 246 IITASEDG 253 (312)
Q Consensus 246 l~s~s~dg 253 (312)
+++|....
T Consensus 253 ~~~G~q~s 260 (825)
T KOG0267|consen 253 VLSGEQIS 260 (825)
T ss_pred eecCchhh
Confidence 98887654
No 107
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=9.1e-27 Score=192.37 Aligned_cols=252 Identities=15% Similarity=0.255 Sum_probs=204.4
Q ss_pred eEEEEe-cCCeEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEecCCCeEEEEEccCceeeeeecccccceeEEEE
Q 047355 31 WVLASL-YSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAV 109 (312)
Q Consensus 31 ~l~~~~-~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~ 109 (312)
+++++. .-..+.+|.+.+...........+++.++.-++.|.+++.|+..|.|++|.+.++..+..+.+|-..|+++.|
T Consensus 52 yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~f 131 (476)
T KOG0646|consen 52 YLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKF 131 (476)
T ss_pred heeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEE
Confidence 455443 3346788988765444433345568999999999999999999999999999999999999999999999999
Q ss_pred ecCCCEEEEEeCCCcEEEEeCCC--------CceeeeEecCCccceEEEEeCCC-CCCEEEEEeCCCeEEEEEcCCCcce
Q 047355 110 HPTFPFVLTASDDKLIKLWDWEK--------NWECTQTFEGHSHYVMQSAFNPK-DLNTFASASLDGTIQIWNMDSSAAK 180 (312)
Q Consensus 110 ~~~~~~l~t~s~d~~v~iwd~~~--------~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~s~s~dg~v~iwd~~~~~~~ 180 (312)
+.++.+++|||.||.|.+|++.. ...+...+..|+-.|.++...+. -...+++.|.|.++++||+..+..+
T Consensus 132 s~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LL 211 (476)
T KOG0646|consen 132 SDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLL 211 (476)
T ss_pred eCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceee
Confidence 99999999999999999998532 23456788999999998887664 3468999999999999999988776
Q ss_pred eeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCC----------------eEEEEeccccc--CeEEEEEeCC
Q 047355 181 FTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETK----------------TCVQILEGHTN--NVTAVCFHPE 242 (312)
Q Consensus 181 ~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~----------------~~~~~~~~h~~--~i~~l~~~~~ 242 (312)
.++.- ...+.++. .+|.+..+..|+.+|.|.+.++.+. .....+.+|.. +|+|++++-|
T Consensus 212 lti~f-p~si~av~--lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~D 288 (476)
T KOG0646|consen 212 LTITF-PSSIKAVA--LDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTD 288 (476)
T ss_pred EEEec-CCcceeEE--EcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecC
Confidence 65532 24456655 5677888999999999998876432 23456778887 9999999999
Q ss_pred CcEEEEEeCCCcEEEEeCCCcceeeecccCccceEEEEEecCC
Q 047355 243 LRIIITASEDGTILIWNATTFRLQNTLSSGLERVWSIGYKKGS 285 (312)
Q Consensus 243 ~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 285 (312)
+..|++|+.||.|.|||+.+.+.++++....+.|.-+.+.|--
T Consensus 289 gtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~ 331 (476)
T KOG0646|consen 289 GTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLE 331 (476)
T ss_pred ccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeeccc
Confidence 9999999999999999999998888887667778778775543
No 108
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=8.4e-27 Score=210.15 Aligned_cols=250 Identities=16% Similarity=0.315 Sum_probs=205.2
Q ss_pred hhhcccCcEEEEEEcCCCCeEEEEecCCeEEEEeccC-------C-----------ceeeeEEecCCceeEEEEeeCCcE
Q 047355 12 EFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHS-------Q-----------TTEKSVKVTDSPVRTAKFVAREHW 73 (312)
Q Consensus 12 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~-------~-----------~~~~~~~~~~~~v~~~~~~~~~~~ 73 (312)
+...|...|.++.|+|||++||+|++|+.|.||.... + +....+..|+..|..+.|+|++.+
T Consensus 64 ~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~ 143 (942)
T KOG0973|consen 64 TMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSL 143 (942)
T ss_pred eeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccE
Confidence 4567889999999999999999999999999998762 0 234567789999999999999999
Q ss_pred EEEecCCCeEEEEEccCceeeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEecC------Cccce
Q 047355 74 IVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEG------HSHYV 147 (312)
Q Consensus 74 l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~------~~~~v 147 (312)
+++++.|++|.+||..+++.++.+++|...|..+.|.|.|+|+++-++|+++++|++.. ....+.+.. ...++
T Consensus 144 lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~d-w~i~k~It~pf~~~~~~T~f 222 (942)
T KOG0973|consen 144 LVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSD-WGIEKSITKPFEESPLTTFF 222 (942)
T ss_pred EEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEccc-ceeeEeeccchhhCCCccee
Confidence 99999999999999999999999999999999999999999999999999999999654 233333322 23467
Q ss_pred EEEEeCCCCCCEEEEEe-C---CCeEEEEEcCCCcceeeecccccceeEEEEEEc----CC-------c----eEEEEEe
Q 047355 148 MQSAFNPKDLNTFASAS-L---DGTIQIWNMDSSAAKFTLDAHEKGINCIDYFIT----SD-------K----VYLITGS 208 (312)
Q Consensus 148 ~~~~~~~~~~~~~~s~s-~---dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~----~~-------~----~~l~sg~ 208 (312)
.++.|+|. +.+|++.- . -.++.|.+-.+=+....+-+|..++.++.|.+. +. . ..+|+|+
T Consensus 223 ~RlSWSPD-G~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgS 301 (942)
T KOG0973|consen 223 LRLSWSPD-GHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGS 301 (942)
T ss_pred eecccCCC-cCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEec
Confidence 88999994 57777653 2 236778777666667788899999999987431 11 1 1688999
Q ss_pred CCCeEEEEeCCCCeEEEEec-ccccCeEEEEEeCCCcEEEEEeCCCcEEEEeCCCc
Q 047355 209 DDFTVKVWDYETKTCVQILE-GHTNNVTAVCFHPELRIIITASEDGTILIWNATTF 263 (312)
Q Consensus 209 ~dg~i~vwd~~~~~~~~~~~-~h~~~i~~l~~~~~~~~l~s~s~dg~v~iwd~~~~ 263 (312)
.|+.|-||.....+++.... -....|..++|+|||..|+.+|.||+|.++..+..
T Consensus 302 qDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 302 QDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred CCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 99999999987777665443 23568999999999999999999999999998753
No 109
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=5.6e-26 Score=179.69 Aligned_cols=278 Identities=14% Similarity=0.209 Sum_probs=203.8
Q ss_pred hhhcccCcEEEEEEcCCCCeEEEEecCCeEEEEeccCCcee--eeEE--ecCCceeEEEEeeCCcEEE-EecCCCeEEEE
Q 047355 12 EFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTE--KSVK--VTDSPVRTAKFVAREHWIV-CGSDDKFIRVF 86 (312)
Q Consensus 12 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~--~~~~--~~~~~v~~~~~~~~~~~l~-~g~~dg~i~iw 86 (312)
.+.+|.+.|++++|+.||+.|++++.|++|++|++...+.. +.++ ..-+.-+.+.|.||-+-++ +.-...++++|
T Consensus 81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vy 160 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVY 160 (420)
T ss_pred hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEE
Confidence 47789999999999999999999999999999998653221 1111 2223456788999876554 44456789999
Q ss_pred EccCce----e--------eeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCC
Q 047355 87 DYNTMA----S--------VKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNP 154 (312)
Q Consensus 87 d~~~~~----~--------~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 154 (312)
.+...+ . ...-+.|.-.|..+-+...+.+|++++.|..|.+|+++. +.++.+......-...+.+|
T Consensus 161 k~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkG--q~L~~idtnq~~n~~aavSP 238 (420)
T KOG2096|consen 161 KLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKG--QLLQSIDTNQSSNYDAAVSP 238 (420)
T ss_pred EeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCC--ceeeeeccccccccceeeCC
Confidence 764321 0 011235666777888888889999999999999999873 34444444434444566788
Q ss_pred CCCCEEEEEeCCCeEEEEEcC--------CCcceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCC------
Q 047355 155 KDLNTFASASLDGTIQIWNMD--------SSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYET------ 220 (312)
Q Consensus 155 ~~~~~~~s~s~dg~v~iwd~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~------ 220 (312)
++.++++++-.-.|++|+.- .-...+.+.+|+.+|...+| +++...+++.+.||++++||+.-
T Consensus 239 -~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aF--sn~S~r~vtvSkDG~wriwdtdVrY~~~q 315 (420)
T KOG2096|consen 239 -DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAF--SNSSTRAVTVSKDGKWRIWDTDVRYEAGQ 315 (420)
T ss_pred -CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeee--CCCcceeEEEecCCcEEEeeccceEecCC
Confidence 56899999989999999862 22345778999999998875 67778899999999999999742
Q ss_pred -CeEEEEe----cccccCeEEEEEeCCCcEEEEEeCCCcEEEEeCCCcceeeeccc-CccceEEEEEecCCCeEEEEecC
Q 047355 221 -KTCVQIL----EGHTNNVTAVCFHPELRIIITASEDGTILIWNATTFRLQNTLSS-GLERVWSIGYKKGSNQVAFGCDN 294 (312)
Q Consensus 221 -~~~~~~~----~~h~~~i~~l~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~ 294 (312)
.+.++.. ..-.+.-..++++|+++.||... ...++++..++++...+++. |.+.+.+++|+++|++++++++.
T Consensus 316 Dpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcGdr 394 (420)
T KOG2096|consen 316 DPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCGDR 394 (420)
T ss_pred CchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeecce
Confidence 1222221 11223344899999999877655 45799999998887777664 67889999999999999988764
Q ss_pred C
Q 047355 295 G 295 (312)
Q Consensus 295 g 295 (312)
-
T Consensus 395 ~ 395 (420)
T KOG2096|consen 395 Y 395 (420)
T ss_pred e
Confidence 3
No 110
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.96 E-value=7.1e-26 Score=198.85 Aligned_cols=287 Identities=20% Similarity=0.267 Sum_probs=223.1
Q ss_pred hhcccCcEEEEEEcCCCC-eEEEEecCCeEEEEeccCCceeeeEE-ecCCceeEEEEeeCCcEEEEecCCCeEEEEEccC
Q 047355 13 FIQKSDRVKSVDFHPTQP-WVLASLYSGTVCIWNYHSQTTEKSVK-VTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNT 90 (312)
Q Consensus 13 ~~~~~~~i~~~~~~~~~~-~l~~~~~dg~v~iw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~ 90 (312)
|.+.-++|.+++|..||+ .+++|...|.+-+||++..+.+.... .|.+.+....|.+....+++++.|+.+++|=.++
T Consensus 240 Fk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~ 319 (910)
T KOG1539|consen 240 FKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDS 319 (910)
T ss_pred EEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeC
Confidence 333348999999999996 56677788999999999888777665 6778899999999999999999999999996654
Q ss_pred ce----eeeeecccccceeEEEEe-cCCCEEEEEeCCCcEEEEeCCCCc---------------------------eeee
Q 047355 91 MA----SVKEFEAHEDYIRSLAVH-PTFPFVLTASDDKLIKLWDWEKNW---------------------------ECTQ 138 (312)
Q Consensus 91 ~~----~~~~~~~h~~~i~~~~~~-~~~~~l~t~s~d~~v~iwd~~~~~---------------------------~~~~ 138 (312)
+. .+..-.+|..|-.++.|. .++.++++++.|++.+.+++.... +++.
T Consensus 320 ~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~ 399 (910)
T KOG1539|consen 320 GDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIV 399 (910)
T ss_pred CCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcce
Confidence 32 344457899999999998 677889999999999988742100 0000
Q ss_pred Ee--------------cCC-----------------------------ccceEEEEeCCCCCCEEEEEeCCCeEEEEEcC
Q 047355 139 TF--------------EGH-----------------------------SHYVMQSAFNPKDLNTFASASLDGTIQIWNMD 175 (312)
Q Consensus 139 ~~--------------~~~-----------------------------~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~ 175 (312)
.+ ..| ...+.+++.++ .+++.+.|...|+|.+|++.
T Consensus 400 ~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~-CGNF~~IG~S~G~Id~fNmQ 478 (910)
T KOG1539|consen 400 EFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF-CGNFVFIGYSKGTIDRFNMQ 478 (910)
T ss_pred eeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEec-cCceEEEeccCCeEEEEEcc
Confidence 00 001 12334444444 45778888899999999999
Q ss_pred CCcceeee---cccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEE---------------------------
Q 047355 176 SSAAKFTL---DAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQ--------------------------- 225 (312)
Q Consensus 176 ~~~~~~~~---~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~--------------------------- 225 (312)
++-....+ .+|..+|..++. +.-++.+++++.+|.+++||..+..+..
T Consensus 479 SGi~r~sf~~~~ah~~~V~gla~--D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf 556 (910)
T KOG1539|consen 479 SGIHRKSFGDSPAHKGEVTGLAV--DGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDF 556 (910)
T ss_pred cCeeecccccCccccCceeEEEe--cCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCce
Confidence 98877777 589999998874 4557789999999999999986554221
Q ss_pred --------------EecccccCeEEEEEeCCCcEEEEEeCCCcEEEEeCCCcceeeecccCccceEEEEEecCCCeEEEE
Q 047355 226 --------------ILEGHTNNVTAVCFHPELRIIITASEDGTILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFG 291 (312)
Q Consensus 226 --------------~~~~h~~~i~~l~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 291 (312)
.+.+|...|+.++|||||+||++++-|++||+||+.++.++--+. ......++.|+|+|++||+.
T Consensus 557 ~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~-vd~~~~sls~SPngD~LAT~ 635 (910)
T KOG1539|consen 557 SIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL-VDSPCTSLSFSPNGDFLATV 635 (910)
T ss_pred eEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEe-cCCcceeeEECCCCCEEEEE
Confidence 245799999999999999999999999999999999998876543 34566799999999999999
Q ss_pred ecCC-eEEEEecc
Q 047355 292 CDNG-TLIVKIGN 303 (312)
Q Consensus 292 ~~~g-~i~v~~~~ 303 (312)
.-|+ -|++|.-.
T Consensus 636 Hvd~~gIylWsNk 648 (910)
T KOG1539|consen 636 HVDQNGIYLWSNK 648 (910)
T ss_pred EecCceEEEEEch
Confidence 9985 46666543
No 111
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=2.1e-25 Score=191.96 Aligned_cols=281 Identities=18% Similarity=0.253 Sum_probs=226.4
Q ss_pred ccCcEEEEEEcCCCCeEEEEecCCeEEEEeccCCce-eeeEEe-cCCceeEEEEeeCCcEEEEecCCCeEEEEEccCcee
Q 047355 16 KSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTT-EKSVKV-TDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMAS 93 (312)
Q Consensus 16 ~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~-~~~~~~-~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~ 93 (312)
...+|.++||+.+.+.||.+-.||.|.||++...=. ...+.+ .+..|.+++|. ++..|++.+.+|.|.-||+.+.+.
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~ 102 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQ 102 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCce
Confidence 357899999999999999999999999999876422 233333 35679999999 566799999999999999999999
Q ss_pred eeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceee-eEecCCccceEEEEeCCCCCCEEEEEeCCCeEEEE
Q 047355 94 VKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECT-QTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIW 172 (312)
Q Consensus 94 ~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iw 172 (312)
...+..-.+.|.+++.+|.+..++.|+.||.+..++........ ..+...+..+.++.|+|. ...+++|+.||.|++|
T Consensus 103 ~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~-~~~i~~Gs~Dg~Iriw 181 (691)
T KOG2048|consen 103 KYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPT-GTKIAGGSIDGVIRIW 181 (691)
T ss_pred eEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCC-ccEEEecccCceEEEE
Confidence 99999999999999999999999999999988888876553322 234455689999999985 4679999999999999
Q ss_pred EcCCCcceeeec----cccc----ceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEecccccCeEEEEEeCCCc
Q 047355 173 NMDSSAAKFTLD----AHEK----GINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELR 244 (312)
Q Consensus 173 d~~~~~~~~~~~----~~~~----~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~i~~l~~~~~~~ 244 (312)
|..++....... .-.. -|.++.+. .+ ..|++|...|+|.+||...+.+++.+..|.+.|.+++..+++.
T Consensus 182 d~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~L--rd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d 258 (691)
T KOG2048|consen 182 DVKSGQTLHIITMQLDRLSKREPTIVWSVLFL--RD-STIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNED 258 (691)
T ss_pred EcCCCceEEEeeecccccccCCceEEEEEEEe--ec-CcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCC
Confidence 999887765221 1111 13344332 33 4689999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCcEEEEeCCCcce----eeecccCccceEEEEEecCCCeEEEEecCCeEEEEecc
Q 047355 245 IIITASEDGTILIWNATTFRL----QNTLSSGLERVWSIGYKKGSNQVAFGCDNGTLIVKIGN 303 (312)
Q Consensus 245 ~l~s~s~dg~v~iwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~v~~~~ 303 (312)
++++++.|+.|.-+...+.+- -.....|...|.+++..++ .|.+|+.|.++.+.-.+
T Consensus 259 ~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~ 319 (691)
T KOG2048|consen 259 RVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSR 319 (691)
T ss_pred eEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEcccc
Confidence 999999999998887665422 2234455667888888877 99999999999987443
No 112
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.95 E-value=1.1e-26 Score=200.20 Aligned_cols=234 Identities=20% Similarity=0.332 Sum_probs=200.3
Q ss_pred hhcccCcEEE-EEEcCC-CCeEEEEecCCeEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEecCCCeEEEEEccC
Q 047355 13 FIQKSDRVKS-VDFHPT-QPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNT 90 (312)
Q Consensus 13 ~~~~~~~i~~-~~~~~~-~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~ 90 (312)
|.+|.+-|.. ++|.+. +-+|++|+.|+.|.+|......+...+.+|...|.++.-..++. +++||+|.++++|....
T Consensus 53 ~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~ 131 (745)
T KOG0301|consen 53 FEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGE 131 (745)
T ss_pred cccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchh
Confidence 4456666666 888863 44699999999999999999999999999999998888777666 99999999999997654
Q ss_pred ceeeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeCCCeEE
Q 047355 91 MASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQ 170 (312)
Q Consensus 91 ~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~ 170 (312)
+...+++|+..|.++..-|.+ .++|||.|.+||+|.- ....++|.+|...|..+++-|. ..|++|+.||.|+
T Consensus 132 --l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~---~~~l~tf~gHtD~VRgL~vl~~--~~flScsNDg~Ir 203 (745)
T KOG0301|consen 132 --LVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG---GTLLKTFSGHTDCVRGLAVLDD--SHFLSCSNDGSIR 203 (745)
T ss_pred --hhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC---CchhhhhccchhheeeeEEecC--CCeEeecCCceEE
Confidence 455689999999999999988 6789999999999974 3567889999999999999874 5799999999999
Q ss_pred EEEcCCCcceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEecccccCeEEEEEeCCCcEEEEEe
Q 047355 171 IWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITAS 250 (312)
Q Consensus 171 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~s 250 (312)
+|++ ++..+....+|+.-+++++. ..++..++++++|+++++|+.. .+.+.+.-..-.|+++.+-++|. +++|+
T Consensus 204 ~w~~-~ge~l~~~~ghtn~vYsis~--~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~ 277 (745)
T KOG0301|consen 204 LWDL-DGEVLLEMHGHTNFVYSISM--ALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGG 277 (745)
T ss_pred EEec-cCceeeeeeccceEEEEEEe--cCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEec
Confidence 9999 67788888999999999984 3456689999999999999875 77787775555899999999887 78999
Q ss_pred CCCcEEEEeCC
Q 047355 251 EDGTILIWNAT 261 (312)
Q Consensus 251 ~dg~v~iwd~~ 261 (312)
+||.||||...
T Consensus 278 SDG~VrVfT~~ 288 (745)
T KOG0301|consen 278 SDGRVRVFTVD 288 (745)
T ss_pred cCceEEEEEec
Confidence 99999999765
No 113
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=4.4e-27 Score=179.48 Aligned_cols=251 Identities=18% Similarity=0.258 Sum_probs=202.8
Q ss_pred hhhhcccCcEEEEEEcCCCCeEEEEecCCeEEEEeccCC---ceeeeEEecCCceeEEEEee--CCcEEEEecCCCeEEE
Q 047355 11 KEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQ---TTEKSVKVTDSPVRTAKFVA--REHWIVCGSDDKFIRV 85 (312)
Q Consensus 11 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~---~~~~~~~~~~~~v~~~~~~~--~~~~l~~g~~dg~i~i 85 (312)
+--.+|.+-|..+..+=.|++|++++.|++|+|+..... ..+..+.+|.+|+..+.|.. -|.+|++++.||.|.+
T Consensus 5 ~idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIi 84 (299)
T KOG1332|consen 5 TIDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVII 84 (299)
T ss_pred ehhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEE
Confidence 345678888998888888999999999999999998654 45678899999999999975 6899999999999999
Q ss_pred EEccCce--eeeeecccccceeEEEEecC--CCEEEEEeCCCcEEEEeCCCC--ceeeeEecCCccceEEEEeCCCCC--
Q 047355 86 FDYNTMA--SVKEFEAHEDYIRSLAVHPT--FPFVLTASDDKLIKLWDWEKN--WECTQTFEGHSHYVMQSAFNPKDL-- 157 (312)
Q Consensus 86 wd~~~~~--~~~~~~~h~~~i~~~~~~~~--~~~l~t~s~d~~v~iwd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~-- 157 (312)
|.-+++. ...+...|...|++++|-|. +-.|+.++.||.|.+.+.+.. ....+....|.--+.++.|.|...
T Consensus 85 Wke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g 164 (299)
T KOG1332|consen 85 WKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPG 164 (299)
T ss_pred EecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCc
Confidence 9987763 34566789999999999875 457889999999999987654 223345677888888999887621
Q ss_pred -----------CEEEEEeCCCeEEEEEcCCCc--ceeeecccccceeEEEEEEcC--CceEEEEEeCCCeEEEEeCCCC-
Q 047355 158 -----------NTFASASLDGTIQIWNMDSSA--AKFTLDAHEKGINCIDYFITS--DKVYLITGSDDFTVKVWDYETK- 221 (312)
Q Consensus 158 -----------~~~~s~s~dg~v~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~--~~~~l~sg~~dg~i~vwd~~~~- 221 (312)
..|++|+.|..|+||+..+.. ...++.+|...|..+++.++- ...+||++++||+|.+|-.+..
T Consensus 165 ~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~ 244 (299)
T KOG1332|consen 165 SLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEY 244 (299)
T ss_pred cccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCcc
Confidence 459999999999999998753 334588999999988876543 2468999999999999976421
Q ss_pred --eEEEEecccccCeEEEEEeCCCcEEEEEeCCCcEEEEeCC
Q 047355 222 --TCVQILEGHTNNVTAVCFHPELRIIITASEDGTILIWNAT 261 (312)
Q Consensus 222 --~~~~~~~~h~~~i~~l~~~~~~~~l~s~s~dg~v~iwd~~ 261 (312)
-....++.....+..+.|++.|..|+.++.|+.|.+|.-+
T Consensus 245 e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 245 EPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred CcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 1123344466789999999999999999999999999754
No 114
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=3.7e-25 Score=167.46 Aligned_cols=246 Identities=19% Similarity=0.337 Sum_probs=200.8
Q ss_pred hhhhcccCcEEEEEEcCCCCeEEEEecCCeEEEEeccCCcee-----eeEEecCCceeEEEEeeC----CcEEEEec-CC
Q 047355 11 KEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTE-----KSVKVTDSPVRTAKFVAR----EHWIVCGS-DD 80 (312)
Q Consensus 11 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~-----~~~~~~~~~v~~~~~~~~----~~~l~~g~-~d 80 (312)
++-..|.+.|++.+|+|+|..+++|+.|.+|++..+...... -.+..|++.|+.++|..+ +..|++++ .|
T Consensus 83 kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagd 162 (350)
T KOG0641|consen 83 KRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGD 162 (350)
T ss_pred eeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCc
Confidence 344568899999999999999999999999999876543322 356788999999999864 44566654 46
Q ss_pred CeEEEEEccCceeeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEec----C---CccceEEEEeC
Q 047355 81 KFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFE----G---HSHYVMQSAFN 153 (312)
Q Consensus 81 g~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~----~---~~~~v~~~~~~ 153 (312)
-.|++-|-.+++..+.+.+|++-|.++ ++-++-++++|+.|.+|++||++-+ .++..+. + ....|..++..
T Consensus 163 c~iy~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~-~~v~~l~~~~~~~glessavaav~vd 240 (350)
T KOG0641|consen 163 CKIYITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVN-SCVNTLDNDFHDGGLESSAVAAVAVD 240 (350)
T ss_pred ceEEEeecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeecc-ceeeeccCcccCCCcccceeEEEEEC
Confidence 777787888889999999999999887 3446789999999999999998754 3333221 1 23578888889
Q ss_pred CCCCCEEEEEeCCCeEEEEEcCCCcceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCC----eEEEEecc
Q 047355 154 PKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETK----TCVQILEG 229 (312)
Q Consensus 154 ~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~----~~~~~~~~ 229 (312)
|. +.++++|-.|.+..+||++.+..++.+..|...+.|+.| +|...|+++++.|..|++-|++.. -++.....
T Consensus 241 ps-grll~sg~~dssc~lydirg~r~iq~f~phsadir~vrf--sp~a~yllt~syd~~ikltdlqgdla~el~~~vv~e 317 (350)
T KOG0641|consen 241 PS-GRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRF--SPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAE 317 (350)
T ss_pred CC-cceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEe--CCCceEEEEecccceEEEeecccchhhcCceEEEEe
Confidence 85 589999999999999999999999999999999999986 667789999999999999998632 23344567
Q ss_pred cccCeEEEEEeCCCcEEEEEeCCCcEEEEeCC
Q 047355 230 HTNNVTAVCFHPELRIIITASEDGTILIWNAT 261 (312)
Q Consensus 230 h~~~i~~l~~~~~~~~l~s~s~dg~v~iwd~~ 261 (312)
|...+-.+.|+|..--+++.+.|.++.+|-++
T Consensus 318 hkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 318 HKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred ccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 88888899999988889999999999999764
No 115
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=4.8e-27 Score=196.27 Aligned_cols=241 Identities=19% Similarity=0.306 Sum_probs=183.1
Q ss_pred eeeEEecCCceeEEEEeeCCcEEEEecCCCeEEEEEccCcee----eeee-cccccceeEEEEecCCCEEEEEeCCCcEE
Q 047355 52 EKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMAS----VKEF-EAHEDYIRSLAVHPTFPFVLTASDDKLIK 126 (312)
Q Consensus 52 ~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~----~~~~-~~h~~~i~~~~~~~~~~~l~t~s~d~~v~ 126 (312)
...+.++...|.++++.+.|..+++|+.|..|++||+..+.. .+.+ ..-...|+++.|++.+..|+..+.....+
T Consensus 160 Ei~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqak 239 (641)
T KOG0772|consen 160 EIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAK 239 (641)
T ss_pred eEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCccee
Confidence 345666777899999999999999999999999999876431 1222 12234699999999999998888889999
Q ss_pred EEeCCCCceee------------eEecCCccceEEEEeCCCCCCEEEEEeCCCeEEEEEcCCCcceeeecc----cccce
Q 047355 127 LWDWEKNWECT------------QTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDA----HEKGI 190 (312)
Q Consensus 127 iwd~~~~~~~~------------~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~----~~~~v 190 (312)
++|.... +.. ....+|...+.+..|+|.+.+.|++++.||++|+||++..+....+.. ....|
T Consensus 240 l~DRdG~-~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv 318 (641)
T KOG0772|consen 240 LLDRDGF-EIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRV 318 (641)
T ss_pred EEccCCc-eeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCccc
Confidence 9995432 211 224688889999999999999999999999999999986543322211 11223
Q ss_pred eEEEEEEcCCceEEEEEeCCCeEEEEeCCCCe---EEEEeccccc--CeEEEEEeCCCcEEEEEeCCCcEEEEeCCCcce
Q 047355 191 NCIDYFITSDKVYLITGSDDFTVKVWDYETKT---CVQILEGHTN--NVTAVCFHPELRIIITASEDGTILIWNATTFRL 265 (312)
Q Consensus 191 ~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~---~~~~~~~h~~--~i~~l~~~~~~~~l~s~s~dg~v~iwd~~~~~~ 265 (312)
....+.+++++.+||+|..||.|.+|+..+.. ..+.-.+|.. .|+||.|+++|++|++-+.|+++++||++.++.
T Consensus 319 ~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kk 398 (641)
T KOG0772|consen 319 PVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKK 398 (641)
T ss_pred CceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecccccc
Confidence 33333458899999999999999999975432 2344467876 899999999999999999999999999988653
Q ss_pred -eeecccCc--cceEEEEEecCCCeEEEEec
Q 047355 266 -QNTLSSGL--ERVWSIGYKKGSNQVAFGCD 293 (312)
Q Consensus 266 -~~~~~~~~--~~v~~~~~~~~~~~l~~~~~ 293 (312)
+....+.. -.-..++|||+.++|++|+.
T Consensus 399 pL~~~tgL~t~~~~tdc~FSPd~kli~TGtS 429 (641)
T KOG0772|consen 399 PLNVRTGLPTPFPGTDCCFSPDDKLILTGTS 429 (641)
T ss_pred chhhhcCCCccCCCCccccCCCceEEEeccc
Confidence 33333221 23567889999999999875
No 116
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.95 E-value=2.8e-26 Score=189.12 Aligned_cols=289 Identities=20% Similarity=0.256 Sum_probs=221.0
Q ss_pred hhhcccCcEEEEEEcCCCC--eEEEEecCCeEEEEeccCC----ceeeeEEecCCceeEEEEeeC-CcEEEEecCCCeEE
Q 047355 12 EFIQKSDRVKSVDFHPTQP--WVLASLYSGTVCIWNYHSQ----TTEKSVKVTDSPVRTAKFVAR-EHWIVCGSDDKFIR 84 (312)
Q Consensus 12 ~~~~~~~~i~~~~~~~~~~--~l~~~~~dg~v~iw~~~~~----~~~~~~~~~~~~v~~~~~~~~-~~~l~~g~~dg~i~ 84 (312)
++.-+..+|.+++|||..+ .+|+|...|.|-+||+... .....+..|..+|..+.|+|. ...+++.+.||+|+
T Consensus 181 v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR 260 (498)
T KOG4328|consen 181 VAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIR 260 (498)
T ss_pred eeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceee
Confidence 3445678999999999764 7788899999999999522 233456788899999999984 56899999999999
Q ss_pred EEEccCceeeeeecc--cccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEE
Q 047355 85 VFDYNTMASVKEFEA--HEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFAS 162 (312)
Q Consensus 85 iwd~~~~~~~~~~~~--h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s 162 (312)
+-|+++......+.. -...+.++.++.+...++++..=|...+||.+........+..|...|..++++|..+..+++
T Consensus 261 ~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT 340 (498)
T KOG4328|consen 261 LQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLAT 340 (498)
T ss_pred eeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheee
Confidence 999987644333333 344567788888888888888888999999988766566677788899999999999999999
Q ss_pred EeCCCeEEEEEcCCCcc----eeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCC----CCeEEEEeccccc--
Q 047355 163 ASLDGTIQIWNMDSSAA----KFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYE----TKTCVQILEGHTN-- 232 (312)
Q Consensus 163 ~s~dg~v~iwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~----~~~~~~~~~~h~~-- 232 (312)
+|.|++++|||++.... ......|...|.+..| +|.+..|++-+.|..|+|||.. ...+...+. |..
T Consensus 341 ~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyF--SPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~~t 417 (498)
T KOG4328|consen 341 ASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYF--SPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNNRT 417 (498)
T ss_pred cccCcceeeeehhhhcCCCCcceecccccceeeeeEE--cCCCCceEeeccCCceEEeecccccccCCccceee-ccCcc
Confidence 99999999999987533 3445678899998765 5555569999999999999983 223333332 332
Q ss_pred --C--eEEEEEeCCCcEEEEEeCCCcEEEEeCCCcceeeecccCcc-ceE-EEEEecCCCeEEEEec-CCeEEEEecc
Q 047355 233 --N--VTAVCFHPELRIIITASEDGTILIWNATTFRLQNTLSSGLE-RVW-SIGYKKGSNQVAFGCD-NGTLIVKIGN 303 (312)
Q Consensus 233 --~--i~~l~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~-~v~-~~~~~~~~~~l~~~~~-~g~i~v~~~~ 303 (312)
. .-...|.|+..+++.|-.-..|-|+|-..+++..++..... .|. -..|+|-+..+++|+. .|.|+|+-.+
T Consensus 418 ~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 418 GRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred cccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEecC
Confidence 2 33568999999999999999999999888887776554433 232 3468998886776666 5666655433
No 117
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.95 E-value=1.1e-25 Score=176.29 Aligned_cols=283 Identities=20% Similarity=0.314 Sum_probs=217.0
Q ss_pred cccCcEEEEEEcC-CCCeEEEEecCCeEEEEeccCCcee----------ee-----EEecCCceeEEEEee-CCcEEEEe
Q 047355 15 QKSDRVKSVDFHP-TQPWVLASLYSGTVCIWNYHSQTTE----------KS-----VKVTDSPVRTAKFVA-REHWIVCG 77 (312)
Q Consensus 15 ~~~~~i~~~~~~~-~~~~l~~~~~dg~v~iw~~~~~~~~----------~~-----~~~~~~~v~~~~~~~-~~~~l~~g 77 (312)
.|.+.|+++.+.+ .|+++++|+.||.|.+||++..... .. -..|...|.++.|.| |...+.++
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtss 120 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSS 120 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecc
Confidence 4778999999998 4799999999999999999754310 00 123556788888887 55677788
Q ss_pred cCCCeEEEEEccCceeeeeecccccceeEEEEecCC---CEEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCC
Q 047355 78 SDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTF---PFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNP 154 (312)
Q Consensus 78 ~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~---~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 154 (312)
+-|.++++||.++.+..-.|+ -++.|.+-+++|-. .++++|.+|-.|++.|+..+ ...+.+.+|...|..+.|+|
T Consensus 121 SFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SG-s~sH~LsGHr~~vlaV~Wsp 198 (397)
T KOG4283|consen 121 SFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASG-SFSHTLSGHRDGVLAVEWSP 198 (397)
T ss_pred cccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCC-cceeeeccccCceEEEEecc
Confidence 999999999999876655553 24567777777743 46788888999999999866 66789999999999999999
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCC-cceee--------------ecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCC
Q 047355 155 KDLNTFASASLDGTIQIWNMDSS-AAKFT--------------LDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYE 219 (312)
Q Consensus 155 ~~~~~~~s~s~dg~v~iwd~~~~-~~~~~--------------~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~ 219 (312)
...-.|++|+.||.|++||++.. .+... -.+|...++.+++ +.++.++++.+.|..+++|+.+
T Consensus 199 ~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~--tSd~~~l~~~gtd~r~r~wn~~ 276 (397)
T KOG4283|consen 199 SSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAW--TSDARYLASCGTDDRIRVWNME 276 (397)
T ss_pred CceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeee--cccchhhhhccCccceEEeecc
Confidence 98888999999999999999753 22222 3456666777774 6789999999999999999998
Q ss_pred CCeEEEE-e--cccccCeEEEEE---eCCCcEEEEEeCCCcEEEEeCCCcceeeecccCccceEEEEEecCCCeEEEEec
Q 047355 220 TKTCVQI-L--EGHTNNVTAVCF---HPELRIIITASEDGTILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGCD 293 (312)
Q Consensus 220 ~~~~~~~-~--~~h~~~i~~l~~---~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 293 (312)
++..... + ..|+.. .+.++ +-+...++---.++.+.+.++-.+..+..+..|..++.+.+|.|+.+.+-+|.-
T Consensus 277 ~G~ntl~~~g~~~~n~~-~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~ 355 (397)
T KOG4283|consen 277 SGRNTLREFGPIIHNQT-TSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDM 355 (397)
T ss_pred cCccccccccccccccc-ccceEEEeecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhcccc
Confidence 7643211 1 112221 11222 233344444455688899998888888889999999999999999999999999
Q ss_pred CCeEEEEec
Q 047355 294 NGTLIVKIG 302 (312)
Q Consensus 294 ~g~i~v~~~ 302 (312)
|+-+.-|.+
T Consensus 356 d~ni~~w~p 364 (397)
T KOG4283|consen 356 NGNIYMWSP 364 (397)
T ss_pred CCccccccc
Confidence 999999987
No 118
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.95 E-value=3.1e-26 Score=190.97 Aligned_cols=273 Identities=16% Similarity=0.258 Sum_probs=219.5
Q ss_pred cccCcEEEEEEcCCCCeEEEEecCCeEEEEeccCC---ceeeeEEe--cCCceeEEEEeeCCcEEEEecCCCeEEEEEcc
Q 047355 15 QKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQ---TTEKSVKV--TDSPVRTAKFVAREHWIVCGSDDKFIRVFDYN 89 (312)
Q Consensus 15 ~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~---~~~~~~~~--~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~ 89 (312)
.|..-|.+++++...+++++|+. |-|+|||+... ..+..+.. .+..++++...+|++.|++|++-.++-|||+.
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLA 495 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA 495 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeecc
Confidence 57788999999999999998875 78999998543 22223322 35679999999999999999999999999997
Q ss_pred Cceee--eeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeCCC
Q 047355 90 TMASV--KEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDG 167 (312)
Q Consensus 90 ~~~~~--~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg 167 (312)
....- .++..-.....+++++|+.+...++..||.|.|||+.+. ..++.|.+|..-+.++..++ ++..+.+|+.|.
T Consensus 496 apTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq-~~VrqfqGhtDGascIdis~-dGtklWTGGlDn 573 (705)
T KOG0639|consen 496 APTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQ-TLVRQFQGHTDGASCIDISK-DGTKLWTGGLDN 573 (705)
T ss_pred CCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccc-eeeecccCCCCCceeEEecC-CCceeecCCCcc
Confidence 64322 222233345677899999999999999999999998764 66788999999999999886 568999999999
Q ss_pred eEEEEEcCCCcceeeecccc--cceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEecccccCeEEEEEeCCCcE
Q 047355 168 TIQIWNMDSSAAKFTLDAHE--KGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRI 245 (312)
Q Consensus 168 ~v~iwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~i~~l~~~~~~~~ 245 (312)
+||-||+++..... .|. ..|.++.+ +|.+.+++.|-+++.+.|-.....+.+ .+..|.+.|.++.|.+-|++
T Consensus 574 tvRcWDlregrqlq---qhdF~SQIfSLg~--cP~~dWlavGMens~vevlh~skp~ky-qlhlheScVLSlKFa~cGkw 647 (705)
T KOG0639|consen 574 TVRCWDLREGRQLQ---QHDFSSQIFSLGY--CPTGDWLAVGMENSNVEVLHTSKPEKY-QLHLHESCVLSLKFAYCGKW 647 (705)
T ss_pred ceeehhhhhhhhhh---hhhhhhhheeccc--CCCccceeeecccCcEEEEecCCccce-eecccccEEEEEEecccCce
Confidence 99999999876543 333 34555554 577889999999999999887655444 45669999999999999999
Q ss_pred EEEEeCCCcEEEEeCCCcceeeecccCccceEEEEEecCCCeEEEEecCCeE
Q 047355 246 IITASEDGTILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGCDNGTL 297 (312)
Q Consensus 246 l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i 297 (312)
+++.+.|+.+..|...-+.-+...++ ...|.++.++.|.++|++|+.|.+.
T Consensus 648 fvStGkDnlLnawrtPyGasiFqskE-~SsVlsCDIS~ddkyIVTGSGdkkA 698 (705)
T KOG0639|consen 648 FVSTGKDNLLNAWRTPYGASIFQSKE-SSSVLSCDISFDDKYIVTGSGDKKA 698 (705)
T ss_pred eeecCchhhhhhccCccccceeeccc-cCcceeeeeccCceEEEecCCCcce
Confidence 99999999999999887665554433 3678999999999999999998653
No 119
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.95 E-value=4.5e-24 Score=178.20 Aligned_cols=274 Identities=19% Similarity=0.283 Sum_probs=214.2
Q ss_pred cCcEEEEEEcCCCCeEEEEecCCeEEEEeccCCceeeeEEec----CCceeEEEEeeCCcEEEEecCCCeEEEEEccCce
Q 047355 17 SDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVT----DSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMA 92 (312)
Q Consensus 17 ~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~ 92 (312)
.+.|....|+|.++.|+.....|++.+|+++.....+..... ...|.+++|.++++ +++|..+|.|.+|+..+..
T Consensus 200 ne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~ 278 (626)
T KOG2106|consen 200 NEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNR 278 (626)
T ss_pred cceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCce
Confidence 467889999999998888888999999999887665544322 24688999999876 7899999999999998888
Q ss_pred eeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCce----------e--------------------------
Q 047355 93 SVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWE----------C-------------------------- 136 (312)
Q Consensus 93 ~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~----------~-------------------------- 136 (312)
..+....|.+.|.+++.-.+|.++ +|+.|..|..||-+-... .
T Consensus 279 ~~k~~~aH~ggv~~L~~lr~Gtll-SGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~ 357 (626)
T KOG2106|consen 279 ISKQVHAHDGGVFSLCMLRDGTLL-SGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLE 357 (626)
T ss_pred EEeEeeecCCceEEEEEecCccEe-ecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeec
Confidence 777777999999999999888754 599999999998321100 0
Q ss_pred ---eeEecCCccceEEEEeCCCCCCEEEEEeCCCeEEEEEcCCCcceeeecccccceeEEEEEEcCCceEEEEEeCCCeE
Q 047355 137 ---TQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTV 213 (312)
Q Consensus 137 ---~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i 213 (312)
.....+|......++.+|. .+.+++++.|+.+++|+ ..+.+.+.. -..+..|.+| .|.| .++.|...|..
T Consensus 358 ~~f~~~v~gh~delwgla~hps-~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~f--hpsg-~va~Gt~~G~w 430 (626)
T KOG2106|consen 358 NGFTLTVQGHGDELWGLATHPS-KNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADF--HPSG-VVAVGTATGRW 430 (626)
T ss_pred CCceEEEEecccceeeEEcCCC-hhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeec--cCcc-eEEEeeccceE
Confidence 0112456666677778875 47899999999999999 334443322 2345677776 4556 79999999999
Q ss_pred EEEeCCCCeEEEEecccccCeEEEEEeCCCcEEEEEeCCCcEEEEeCCCc-ceeee-cccCccceEEEEEecCCCeEEEE
Q 047355 214 KVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITASEDGTILIWNATTF-RLQNT-LSSGLERVWSIGYKKGSNQVAFG 291 (312)
Q Consensus 214 ~vwd~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~s~dg~v~iwd~~~~-~~~~~-~~~~~~~v~~~~~~~~~~~l~~~ 291 (312)
.|.|.++...+..-.. ++++++++|+|+|.+||.|+.|+.|+||.++.. +.... -.-+...+..+.|++|+++|.+-
T Consensus 431 ~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~ 509 (626)
T KOG2106|consen 431 FVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSN 509 (626)
T ss_pred EEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEec
Confidence 9999998666655444 889999999999999999999999999987653 22222 22233789999999999999999
Q ss_pred ecCCeEEEE
Q 047355 292 CDNGTLIVK 300 (312)
Q Consensus 292 ~~~g~i~v~ 300 (312)
+.|=.|.+|
T Consensus 510 S~d~eiLyW 518 (626)
T KOG2106|consen 510 SGDYEILYW 518 (626)
T ss_pred cCceEEEEE
Confidence 999999999
No 120
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=5.7e-25 Score=173.69 Aligned_cols=263 Identities=14% Similarity=0.268 Sum_probs=207.9
Q ss_pred eEEEEecCCeEEEEeccCCc------------eeeeEEecCCceeEEEEeeCCcEEEEecCCCeEEEEEccCceeeeeec
Q 047355 31 WVLASLYSGTVCIWNYHSQT------------TEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFE 98 (312)
Q Consensus 31 ~l~~~~~dg~v~iw~~~~~~------------~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~ 98 (312)
.+++|++...|.=++++... +.-.+..|.+++++++.+ +.++++|+.|.+|++||+.+......+-
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll 80 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILL 80 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhccee
Confidence 35667777766666654322 122345677888887765 7899999999999999999988888999
Q ss_pred ccccceeEEEEecCCC--EEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeCCCeEEEEEcCC
Q 047355 99 AHEDYIRSLAVHPTFP--FVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDS 176 (312)
Q Consensus 99 ~h~~~i~~~~~~~~~~--~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~ 176 (312)
.|.+.|+++.|.+... .|++|+.||.|.+|+.. ...+...+.+|...|..++.+|.+ .+.++.+.|+.+++||+-.
T Consensus 81 ~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~-~W~~~~slK~H~~~Vt~lsiHPS~-KLALsVg~D~~lr~WNLV~ 158 (362)
T KOG0294|consen 81 SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVG-SWELLKSLKAHKGQVTDLSIHPSG-KLALSVGGDQVLRTWNLVR 158 (362)
T ss_pred ccccceEEEEecCCcchhheeeecCCCcEEEEEcC-CeEEeeeecccccccceeEecCCC-ceEEEEcCCceeeeehhhc
Confidence 9999999999988765 89999999999999965 457888999999999999999964 7888899999999999988
Q ss_pred CcceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEecccccCeEEEEEeCCCcEEEEEeCCCcEE
Q 047355 177 SAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITASEDGTIL 256 (312)
Q Consensus 177 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~s~dg~v~ 256 (312)
++..+.+.-...+ ..+.| ++.|.+++.++.+ .|-+|.+++-.....+.. ...+.++.|.. +..|++|++|+.|+
T Consensus 159 Gr~a~v~~L~~~a-t~v~w--~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~-~~r~l~~~~l~-~~~L~vG~d~~~i~ 232 (362)
T KOG0294|consen 159 GRVAFVLNLKNKA-TLVSW--SPQGDHFVVSGRN-KIDIYQLDNASVFREIEN-PKRILCATFLD-GSELLVGGDNEWIS 232 (362)
T ss_pred CccceeeccCCcc-eeeEE--cCCCCEEEEEecc-EEEEEecccHhHhhhhhc-cccceeeeecC-CceEEEecCCceEE
Confidence 7766555433222 22444 4677777776655 589998876655444432 24577777754 46799999999999
Q ss_pred EEeCCCcceeeecccCccceEEEEE--ecCCCeEEEEecCCeEEEEecc
Q 047355 257 IWNATTFRLQNTLSSGLERVWSIGY--KKGSNQVAFGCDNGTLIVKIGN 303 (312)
Q Consensus 257 iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~~g~i~v~~~~ 303 (312)
+||.........+.+|..+|..+.+ .|++.+|++++.||.|.||=-+
T Consensus 233 ~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~ 281 (362)
T KOG0294|consen 233 LKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDID 281 (362)
T ss_pred EeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcc
Confidence 9999988899999999999999985 4778999999999999998543
No 121
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.95 E-value=1.2e-24 Score=191.30 Aligned_cols=294 Identities=17% Similarity=0.220 Sum_probs=234.9
Q ss_pred hhhhcccCcEEEEEEcCCCCeEEEEecCCeEEEEeccCCceeeeEEecCCceeEEEEeeCCcE-EEEecCCCeEEEEEcc
Q 047355 11 KEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHW-IVCGSDDKFIRVFDYN 89 (312)
Q Consensus 11 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~g~~dg~i~iwd~~ 89 (312)
.+|.++.+.|+++.=+|-=+.++.|..+|+|.++|+...+.+.+|+...+.|+.+.|..||.. +++|+..|.+.+||++
T Consensus 196 ~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe 275 (910)
T KOG1539|consen 196 YTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLE 275 (910)
T ss_pred EEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcC
Confidence 356777899999999999999999999999999999999999999888899999999999876 5567777999999999
Q ss_pred Cceeeeeec-ccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCC---ceeeeEecCCccceEEEEeCCCCCCEEEEEeC
Q 047355 90 TMASVKEFE-AHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKN---WECTQTFEGHSHYVMQSAFNPKDLNTFASASL 165 (312)
Q Consensus 90 ~~~~~~~~~-~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~ 165 (312)
..+....++ .|.+.|....+.|..+.+++++.|+.+++|=...+ ...++.-.+|..+..++.|....+..+.+++.
T Consensus 276 ~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~ 355 (910)
T KOG1539|consen 276 KKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQ 355 (910)
T ss_pred CCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEeccc
Confidence 887776665 78899999999999999999999999999854322 12234446787777777777666677777777
Q ss_pred CCeEEEEEcC-----------------------------------------------------------------CCcc-
Q 047355 166 DGTIQIWNMD-----------------------------------------------------------------SSAA- 179 (312)
Q Consensus 166 dg~v~iwd~~-----------------------------------------------------------------~~~~- 179 (312)
|++.+.+++. +...
T Consensus 356 Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G 435 (910)
T KOG1539|consen 356 DRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSG 435 (910)
T ss_pred CcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccc
Confidence 7777766652 1111
Q ss_pred eeeeccc---ccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEe---cccccCeEEEEEeCCCcEEEEEeCCC
Q 047355 180 KFTLDAH---EKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQIL---EGHTNNVTAVCFHPELRIIITASEDG 253 (312)
Q Consensus 180 ~~~~~~~---~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~---~~h~~~i~~l~~~~~~~~l~s~s~dg 253 (312)
.+.+... ...+++.+...++-|++.+.|...|.|.+|+++++-....+ ..|.++|++++....++.+++++.+|
T Consensus 436 ~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~G 515 (910)
T KOG1539|consen 436 RHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADG 515 (910)
T ss_pred cEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcc
Confidence 0111100 01233444456777899999999999999999999888888 58999999999999999999999999
Q ss_pred cEEEEeCCCcc-----------------------------------------eeeecccCccceEEEEEecCCCeEEEEe
Q 047355 254 TILIWNATTFR-----------------------------------------LQNTLSSGLERVWSIGYKKGSNQVAFGC 292 (312)
Q Consensus 254 ~v~iwd~~~~~-----------------------------------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 292 (312)
.+.+||..+.. +...+.+|..++..+.|||||+.|++++
T Consensus 516 ilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisas 595 (910)
T KOG1539|consen 516 ILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISAS 595 (910)
T ss_pred eEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEee
Confidence 99999986543 2234567788999999999999999999
Q ss_pred cCCeEEEEeccC
Q 047355 293 DNGTLIVKIGNS 304 (312)
Q Consensus 293 ~~g~i~v~~~~~ 304 (312)
-|++|++|=.-+
T Consensus 596 mD~tIr~wDlpt 607 (910)
T KOG1539|consen 596 MDSTIRTWDLPT 607 (910)
T ss_pred cCCcEEEEeccC
Confidence 999999985443
No 122
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=9.2e-27 Score=202.91 Aligned_cols=240 Identities=19% Similarity=0.339 Sum_probs=197.5
Q ss_pred cEEEEEEcC-CCCeEEEEecCCeEEEEeccC---CceeeeEEecCCceeEEEEeeC-CcEEEEecCCCeEEEEEccCcee
Q 047355 19 RVKSVDFHP-TQPWVLASLYSGTVCIWNYHS---QTTEKSVKVTDSPVRTAKFVAR-EHWIVCGSDDKFIRVFDYNTMAS 93 (312)
Q Consensus 19 ~i~~~~~~~-~~~~l~~~~~dg~v~iw~~~~---~~~~~~~~~~~~~v~~~~~~~~-~~~l~~g~~dg~i~iwd~~~~~~ 93 (312)
.+..+.|+. +.++||+++..|.|.+||+.. .+.+..|..|...+..+.|++. ..+|++|+.||+|++||++....
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S 168 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS 168 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc
Confidence 345667764 567899999999999999976 5556678889999999999975 56788999999999999999888
Q ss_pred eeeecccccceeEEEEecC-CCEEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeCCCeEEEE
Q 047355 94 VKEFEAHEDYIRSLAVHPT-FPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIW 172 (312)
Q Consensus 94 ~~~~~~h~~~i~~~~~~~~-~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iw 172 (312)
...+.+....|+++.|+|. +..++++.+.|.+++||++....+...+..|.++|.++.|+| +..++|+|+.|++|+||
T Consensus 169 ~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhP-nr~~lATGGRDK~vkiW 247 (839)
T KOG0269|consen 169 KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHP-NREWLATGGRDKMVKIW 247 (839)
T ss_pred cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecC-CCceeeecCCCccEEEE
Confidence 8888888899999999985 456889999999999999988888888999999999999999 78999999999999999
Q ss_pred EcCCCcceeeecccc-cceeEEEEEEcCCceEEEEEe--CCCeEEEEeCCCC-eEEEEecccccCeEEEEEeC-CCcEEE
Q 047355 173 NMDSSAAKFTLDAHE-KGINCIDYFITSDKVYLITGS--DDFTVKVWDYETK-TCVQILEGHTNNVTAVCFHP-ELRIII 247 (312)
Q Consensus 173 d~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~sg~--~dg~i~vwd~~~~-~~~~~~~~h~~~i~~l~~~~-~~~~l~ 247 (312)
|............++ .++.++.|-+.. ...|++++ .|-.|+|||++.. -+..++..|...++.++|.. |...+.
T Consensus 248 d~t~~~~~~~~tInTiapv~rVkWRP~~-~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~ 326 (839)
T KOG0269|consen 248 DMTDSRAKPKHTINTIAPVGRVKWRPAR-SYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLW 326 (839)
T ss_pred eccCCCccceeEEeecceeeeeeeccCc-cchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeE
Confidence 998655443333332 567888875432 34466655 5788999999753 46788889999999999965 667889
Q ss_pred EEeCCCcEEEEeC
Q 047355 248 TASEDGTILIWNA 260 (312)
Q Consensus 248 s~s~dg~v~iwd~ 260 (312)
+++.|++|..=..
T Consensus 327 s~sKD~tv~qh~~ 339 (839)
T KOG0269|consen 327 SCSKDGTVLQHLF 339 (839)
T ss_pred eecCccHHHHhhh
Confidence 9999998765443
No 123
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.7e-25 Score=196.97 Aligned_cols=209 Identities=16% Similarity=0.226 Sum_probs=173.4
Q ss_pred hhhhhhhcccCcEEEEEEcCCCCeEEEEecCCeEEEEeccCCceeeeEEecCCceeEEEEee-CCcEEEEecCCCeEEEE
Q 047355 8 QIEKEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVA-REHWIVCGSDDKFIRVF 86 (312)
Q Consensus 8 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~g~~dg~i~iw 86 (312)
...++|.+|.+.|..|+|+.+ .+|++++.|.+||+|++...++++.|. |..-|++++|+| |++++++|+-|+.++||
T Consensus 360 kP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~KvRiW 437 (712)
T KOG0283|consen 360 KPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGKVRLW 437 (712)
T ss_pred cchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecccccceEEe
Confidence 346789999999999999854 599999999999999999999999886 556899999998 67899999999999999
Q ss_pred EccCceeeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeee-Eec------CCccceEEEEeCCCCCCE
Q 047355 87 DYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQ-TFE------GHSHYVMQSAFNPKDLNT 159 (312)
Q Consensus 87 d~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~-~~~------~~~~~v~~~~~~~~~~~~ 159 (312)
++...+...-...+ +-|+++++.|+|++.+.|+.+|.+++|+......... .+. .....|+.+.|.|.+...
T Consensus 438 sI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~ 516 (712)
T KOG0283|consen 438 SISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDE 516 (712)
T ss_pred ecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCe
Confidence 99887655444444 7799999999999999999999999999875422111 011 112279999999988888
Q ss_pred EEEEeCCCeEEEEEcCCCcceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCC
Q 047355 160 FASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYE 219 (312)
Q Consensus 160 ~~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~ 219 (312)
+++.+.|..|||||++....+..+.++...-..+...++.||.+|+++++|..|++|+..
T Consensus 517 vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 517 VLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKND 576 (712)
T ss_pred EEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCC
Confidence 999999999999999888888778776555444444567799999999999999999974
No 124
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.94 E-value=6.7e-24 Score=177.17 Aligned_cols=287 Identities=18% Similarity=0.368 Sum_probs=216.5
Q ss_pred hhhhhhhcccCcEEEEEEcCCCCeEEEEecCC--------eEEEEeccCCceeeeEEecCCceeEEEEeeC--CcEEEEe
Q 047355 8 QIEKEFIQKSDRVKSVDFHPTQPWVLASLYSG--------TVCIWNYHSQTTEKSVKVTDSPVRTAKFVAR--EHWIVCG 77 (312)
Q Consensus 8 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--------~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~g 77 (312)
+.+|.|.+|.+.|.+++.||+.-.+++|-..| ++|+||-.+...+..+...+..|.+++|++- +..++.-
T Consensus 95 ~~Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~v 174 (626)
T KOG2106|consen 95 RSQRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAV 174 (626)
T ss_pred hhcccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeecccCCCceEEEe
Confidence 35678999999999999999998888876555 5999998777777777778889999999963 4444443
Q ss_pred --cCCCeEEEEEccCceeeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCcee--eeEecCC-ccceEEEEe
Q 047355 78 --SDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWEC--TQTFEGH-SHYVMQSAF 152 (312)
Q Consensus 78 --~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~--~~~~~~~-~~~v~~~~~ 152 (312)
+++..+-+||..........+.-...|....|+|....++.....+.+.+|+++.+... ...|+.+ ...|.++.|
T Consensus 175 D~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F 254 (626)
T KOG2106|consen 175 DDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTF 254 (626)
T ss_pred cCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEE
Confidence 34567889999887777777777788899999998876654445689999998765221 1233333 368899999
Q ss_pred CCCCCCEEEEEeCCCeEEEEEcCCCcceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCe----------
Q 047355 153 NPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKT---------- 222 (312)
Q Consensus 153 ~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~---------- 222 (312)
.++ .-+++|-.+|.|.||+..+.+..++..+|..+|.++.. ..+|. |++|+.|+.|..||-.-.+
T Consensus 255 ~en--gdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~--lr~Gt-llSGgKDRki~~Wd~~y~k~r~~elPe~~ 329 (626)
T KOG2106|consen 255 LEN--GDVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCM--LRDGT-LLSGGKDRKIILWDDNYRKLRETELPEQF 329 (626)
T ss_pred cCC--CCEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEE--ecCcc-EeecCccceEEeccccccccccccCchhc
Confidence 875 45899999999999999988877777799999999875 34565 6669999999999831000
Q ss_pred -EE-----------------------------EEecccccCeEEEEEeCCCcEEEEEeCCCcEEEEeCCC----------
Q 047355 223 -CV-----------------------------QILEGHTNNVTAVCFHPELRIIITASEDGTILIWNATT---------- 262 (312)
Q Consensus 223 -~~-----------------------------~~~~~h~~~i~~l~~~~~~~~l~s~s~dg~v~iwd~~~---------- 262 (312)
.+ ....+|......++.+|+..+++|++.|+.+++|+-..
T Consensus 330 G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~k~~wt~~~~d~ 409 (626)
T KOG2106|consen 330 GPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDHKLEWTKIIEDP 409 (626)
T ss_pred CCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEccCCceeEEEEecCc
Confidence 00 01235777888888888888888888888888887321
Q ss_pred ----------------------------cceeeecccCccceEEEEEecCCCeEEEEecCCeEEEE
Q 047355 263 ----------------------------FRLQNTLSSGLERVWSIGYKKGSNQVAFGCDNGTLIVK 300 (312)
Q Consensus 263 ----------------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~v~ 300 (312)
..++. +....+++..++|+|+|..||.|+.|+.|+|-
T Consensus 410 ~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~-~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy 474 (626)
T KOG2106|consen 410 AECADFHPSGVVAVGTATGRWFVLDTETQDLVT-IHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIY 474 (626)
T ss_pred eeEeeccCcceEEEeeccceEEEEecccceeEE-EEecCCceEEEEEcCCCCEEEEecCCCeEEEE
Confidence 11111 11225678999999999999999999998854
No 125
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.94 E-value=1.5e-24 Score=187.05 Aligned_cols=295 Identities=16% Similarity=0.227 Sum_probs=228.4
Q ss_pred hhhhhhhcccCcEEEEEEcCCCCeEEEEecCCeEEEEeccCCc--eeeeEEe-----cCCceeEEEEeeCCcEEEEecCC
Q 047355 8 QIEKEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQT--TEKSVKV-----TDSPVRTAKFVAREHWIVCGSDD 80 (312)
Q Consensus 8 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~--~~~~~~~-----~~~~v~~~~~~~~~~~l~~g~~d 80 (312)
.++..+.+|.+-|+++.|+|.+..|++++.|.++.+|..++.. -....+. .......+.|++++..+++-+..
T Consensus 258 s~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~ 337 (764)
T KOG1063|consen 258 SFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRT 337 (764)
T ss_pred ehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEeccc
Confidence 3445577999999999999999999999999999999876542 2233332 23457788899999999999999
Q ss_pred CeEEEEEccCc---eeeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEe---cCCccceEEEEeCC
Q 047355 81 KFIRVFDYNTM---ASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTF---EGHSHYVMQSAFNP 154 (312)
Q Consensus 81 g~i~iwd~~~~---~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~---~~~~~~v~~~~~~~ 154 (312)
|-.++|..+.. .....+.+|.+.|++++|+|.|.++++.|.|.+-|+|-.-..+..-+.+ +-|...+.++.+-+
T Consensus 338 Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn 417 (764)
T KOG1063|consen 338 GGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVN 417 (764)
T ss_pred CcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehcc
Confidence 99999983332 2344568999999999999999999999999999998643222222222 34666778888876
Q ss_pred CCCCEEEEEeCCCeEEEEEcCC--------------------------------Ccc-----------------------
Q 047355 155 KDLNTFASASLDGTIQIWNMDS--------------------------------SAA----------------------- 179 (312)
Q Consensus 155 ~~~~~~~s~s~dg~v~iwd~~~--------------------------------~~~----------------------- 179 (312)
. ...|++|....-+|+|+... ++.
T Consensus 418 ~-~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~ 496 (764)
T KOG1063|consen 418 E-DLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAA 496 (764)
T ss_pred C-CceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccC
Confidence 4 46889988888899997620 000
Q ss_pred ---------------------eeeecccccceeEEEEEEcCCceEEEEEeCCC-----eEEEEeCCCCeEEEEecccccC
Q 047355 180 ---------------------KFTLDAHEKGINCIDYFITSDKVYLITGSDDF-----TVKVWDYETKTCVQILEGHTNN 233 (312)
Q Consensus 180 ---------------------~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg-----~i~vwd~~~~~~~~~~~~h~~~ 233 (312)
...+.+|...|.+++ .++++.++|+++... .|++|+..+....+.+.+|.-.
T Consensus 497 p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~--~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLT 574 (764)
T KOG1063|consen 497 PCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALA--ISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLT 574 (764)
T ss_pred chhccCCChHHHHHHhccchhhHHhccCceeEEEEE--ecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceE
Confidence 011234555677776 478899999987654 4899999888888889999999
Q ss_pred eEEEEEeCCCcEEEEEeCCCcEEEEeCCCc-ceee---ecccCccceEEEEEecCCCeEEEEecCCeEEEEeccCC
Q 047355 234 VTAVCFHPELRIIITASEDGTILIWNATTF-RLQN---TLSSGLERVWSIGYKKGSNQVAFGCDNGTLIVKIGNSS 305 (312)
Q Consensus 234 i~~l~~~~~~~~l~s~s~dg~v~iwd~~~~-~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~v~~~~~~ 305 (312)
|+.++||||+++|++.|.|+++.+|..... .... ..+.|..-+|...|+|++.+++++|.|.++.||--...
T Consensus 575 VT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 575 VTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred EEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence 999999999999999999999999986432 1222 25667777999999999999999999999999976644
No 126
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.94 E-value=3.1e-23 Score=175.02 Aligned_cols=269 Identities=14% Similarity=0.146 Sum_probs=194.7
Q ss_pred CeEEEEecCCeEEEEeccCCceeeeEEecCCceeEEEEeeCCcEE-EEecCCCeEEEEEccCceeeeeecccccceeEEE
Q 047355 30 PWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWI-VCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLA 108 (312)
Q Consensus 30 ~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~ 108 (312)
..+++++.|+.+++||+.+.+....+..+. .+..+.|+++++.+ ++++.++.|++||..+++....+..+.. +..++
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~ 79 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFA 79 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEE
Confidence 467788999999999998888777776544 35678999999876 5677899999999998877666655544 56789
Q ss_pred EecCCCEEEE-EeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeCCC-eEEEEEcCCCcceeeeccc
Q 047355 109 VHPTFPFVLT-ASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDG-TIQIWNMDSSAAKFTLDAH 186 (312)
Q Consensus 109 ~~~~~~~l~t-~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg-~v~iwd~~~~~~~~~~~~~ 186 (312)
++|+++.+++ ++.|+.+++||+... .....+.. ...+..+.|+|. +..+++++.++ .+.+||.++..........
T Consensus 80 ~~~~g~~l~~~~~~~~~l~~~d~~~~-~~~~~~~~-~~~~~~~~~~~d-g~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~ 156 (300)
T TIGR03866 80 LHPNGKILYIANEDDNLVTVIDIETR-KVLAEIPV-GVEPEGMAVSPD-GKIVVNTSETTNMAHFIDTKTYEIVDNVLVD 156 (300)
T ss_pred ECCCCCEEEEEcCCCCeEEEEECCCC-eEEeEeeC-CCCcceEEECCC-CCEEEEEecCCCeEEEEeCCCCeEEEEEEcC
Confidence 9999987754 566899999998764 33333432 223466888884 56777777765 5678898876554433222
Q ss_pred ccceeEEEEEEcCCceEEE-EEeCCCeEEEEeCCCCeEEEEecccc-----c--CeEEEEEeCCCcEEEE-EeCCCcEEE
Q 047355 187 EKGINCIDYFITSDKVYLI-TGSDDFTVKVWDYETKTCVQILEGHT-----N--NVTAVCFHPELRIIIT-ASEDGTILI 257 (312)
Q Consensus 187 ~~~v~~~~~~~~~~~~~l~-sg~~dg~i~vwd~~~~~~~~~~~~h~-----~--~i~~l~~~~~~~~l~s-~s~dg~v~i 257 (312)
.....+. +++++.+++ ++..++.|++||+++++.+..+..+. . ....++|+|++++++. .+.++.+.+
T Consensus 157 -~~~~~~~--~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v 233 (300)
T TIGR03866 157 -QRPRFAE--FTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAV 233 (300)
T ss_pred -CCccEEE--ECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEE
Confidence 2334444 467777775 44569999999999888776654321 1 2346899999987544 455678999
Q ss_pred EeCCCcceeeecccCccceEEEEEecCCCeEEEEe-cCCeEEEEeccCCCC
Q 047355 258 WNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGC-DNGTLIVKIGNSSGC 307 (312)
Q Consensus 258 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~g~i~v~~~~~~~~ 307 (312)
||..++++...+. +...+++++|+|+|+.|+++. .+|+|+||-.++-.+
T Consensus 234 ~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~ 283 (300)
T TIGR03866 234 VDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKV 283 (300)
T ss_pred EECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcE
Confidence 9999888765543 335688999999999998864 589999987775443
No 127
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.8e-24 Score=170.32 Aligned_cols=246 Identities=20% Similarity=0.368 Sum_probs=188.4
Q ss_pred ecCCceeEEEEeeCCcEEEEecCCCeEEEEEccC----ceeeeeecccccceeEEEEe-c-CCCEEEEEeCCCcEEEEeC
Q 047355 57 VTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNT----MASVKEFEAHEDYIRSLAVH-P-TFPFVLTASDDKLIKLWDW 130 (312)
Q Consensus 57 ~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~----~~~~~~~~~h~~~i~~~~~~-~-~~~~l~t~s~d~~v~iwd~ 130 (312)
.|..-|.++.|..-|+.+++++.|+++++||.++ ..+....+.|.+.|..+.|- | -|+.+++++.|++++||.-
T Consensus 11 ~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE 90 (361)
T KOG2445|consen 11 GHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEE 90 (361)
T ss_pred CCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeee
Confidence 4667789999999999999999999999999643 34667789999999999994 4 4788999999999999974
Q ss_pred CC-C-------ceeeeEecCCccceEEEEeCCCCC-CEEEEEeCCCeEEEEEcCCCccee------ee-------ccccc
Q 047355 131 EK-N-------WECTQTFEGHSHYVMQSAFNPKDL-NTFASASLDGTIQIWNMDSSAAKF------TL-------DAHEK 188 (312)
Q Consensus 131 ~~-~-------~~~~~~~~~~~~~v~~~~~~~~~~-~~~~s~s~dg~v~iwd~~~~~~~~------~~-------~~~~~ 188 (312)
.. . .....++......|..+.|.|... -.+++++.||.+|||+........ .+ ..+..
T Consensus 91 ~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~ 170 (361)
T KOG2445|consen 91 QEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQ 170 (361)
T ss_pred cccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccC
Confidence 21 1 111234556677899999999764 468899999999999975432111 11 13445
Q ss_pred ceeEEEEEEcC-CceEEEEEeCC-----CeEEEEeCCCC----eEEEEecccccCeEEEEEeCCC----cEEEEEeCCCc
Q 047355 189 GINCIDYFITS-DKVYLITGSDD-----FTVKVWDYETK----TCVQILEGHTNNVTAVCFHPEL----RIIITASEDGT 254 (312)
Q Consensus 189 ~v~~~~~~~~~-~~~~l~sg~~d-----g~i~vwd~~~~----~~~~~~~~h~~~i~~l~~~~~~----~~l~s~s~dg~ 254 (312)
+..|+.|.++. ...+||.|+.+ +.+++|..... ..+..+.+|.++|+.|+|.|+- .+||+++.||
T Consensus 171 ~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg- 249 (361)
T KOG2445|consen 171 PCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG- 249 (361)
T ss_pred cceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-
Confidence 66777775432 24567777765 47888865432 3455678999999999999963 4799999999
Q ss_pred EEEEeCCCc--------------------ceeeecccCccceEEEEEecCCCeEEEEecCCeEEEEecc
Q 047355 255 ILIWNATTF--------------------RLQNTLSSGLERVWSIGYKKGSNQVAFGCDNGTLIVKIGN 303 (312)
Q Consensus 255 v~iwd~~~~--------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~v~~~~ 303 (312)
|+||.+... +.+..+..|..+||.+.|+--|..|++.++||++++|-.+
T Consensus 250 v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 250 VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 999998731 2355677899999999999999999999999999999765
No 128
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.94 E-value=1.5e-23 Score=176.90 Aligned_cols=260 Identities=12% Similarity=0.175 Sum_probs=186.1
Q ss_pred CcEEEEEEcCCCCeEE-EEecCCeEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEe-cCCCeEEEEEccCceeee
Q 047355 18 DRVKSVDFHPTQPWVL-ASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCG-SDDKFIRVFDYNTMASVK 95 (312)
Q Consensus 18 ~~i~~~~~~~~~~~l~-~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g-~~dg~i~iwd~~~~~~~~ 95 (312)
..+..++|+|+++.++ ++..++.|++||..+.+....+..+.. ...+.++++++.++++ ..++.+++||+.+.+.+.
T Consensus 31 ~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~ 109 (300)
T TIGR03866 31 QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLA 109 (300)
T ss_pred CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEe
Confidence 4467899999999774 567889999999988776655544333 4577899999877654 568999999999877666
Q ss_pred eecccccceeEEEEecCCCEEEEEeCCC-cEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeCCCeEEEEEc
Q 047355 96 EFEAHEDYIRSLAVHPTFPFVLTASDDK-LIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNM 174 (312)
Q Consensus 96 ~~~~h~~~i~~~~~~~~~~~l~t~s~d~-~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~ 174 (312)
.++.+ ..+.+++++|++.++++++.++ .+.+||..... ...... .......+.|+|.+..+++++..++.|++||+
T Consensus 110 ~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~-~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~ 186 (300)
T TIGR03866 110 EIPVG-VEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYE-IVDNVL-VDQRPRFAEFTADGKELWVSSEIGGTVSVIDV 186 (300)
T ss_pred EeeCC-CCcceEEECCCCCEEEEEecCCCeEEEEeCCCCe-EEEEEE-cCCCccEEEECCCCCEEEEEcCCCCEEEEEEc
Confidence 66432 3468899999999999888765 46778976542 222221 12234567888864333455567999999999
Q ss_pred CCCcceeeecccc-----cceeEEEEEEcCCceEEE-EEeCCCeEEEEeCCCCeEEEEecccccCeEEEEEeCCCcEEEE
Q 047355 175 DSSAAKFTLDAHE-----KGINCIDYFITSDKVYLI-TGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIIT 248 (312)
Q Consensus 175 ~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~l~-sg~~dg~i~vwd~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s 248 (312)
++.+....+..+. .......+.+++++.+++ +.+.++.|.+||.++++....+. +...+.+++|+|++++|++
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~ 265 (300)
T TIGR03866 187 ATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLT 265 (300)
T ss_pred CcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEE
Confidence 9876655443221 122222334577887644 34556789999999888776553 4457899999999999887
Q ss_pred E-eCCCcEEEEeCCCcceeeecccCccceEEEEEec
Q 047355 249 A-SEDGTILIWNATTFRLQNTLSSGLERVWSIGYKK 283 (312)
Q Consensus 249 ~-s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~ 283 (312)
+ +.++.|++||+.+++.+.++..+ ..++.++|+|
T Consensus 266 ~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 266 TNGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred EcCCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence 6 46899999999999988888654 6668888765
No 129
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=9e-25 Score=185.71 Aligned_cols=291 Identities=18% Similarity=0.260 Sum_probs=218.6
Q ss_pred cchhhhhhhhhcccCcEEEEEEcCCCCeEEEEecCCeEEEEeccCCceeeeEEecCCceeEEEEeeCCcE-EEEecCCCe
Q 047355 4 PLELQIEKEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHW-IVCGSDDKF 82 (312)
Q Consensus 4 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~g~~dg~ 82 (312)
|+...+...|.+|.+.|.+|..+|.|.+|++|+.||+|+||.+.++++++.+.. ++.|.+++|+|.+.. ++++...+.
T Consensus 387 PFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~-d~~I~~vaw~P~~~~~vLAvA~~~~ 465 (733)
T KOG0650|consen 387 PFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF-DSEIRSVAWNPLSDLCVLAVAVGEC 465 (733)
T ss_pred CCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee-cceeEEEEecCCCCceeEEEEecCc
Confidence 344445567899999999999999999999999999999999999999988765 448999999987553 223333333
Q ss_pred EEEEEccCc-------------------------------------eeeeeecccccceeEEEEecCCCEEEEEeC---C
Q 047355 83 IRVFDYNTM-------------------------------------ASVKEFEAHEDYIRSLAVHPTFPFVLTASD---D 122 (312)
Q Consensus 83 i~iwd~~~~-------------------------------------~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~---d 122 (312)
+.+-+..-+ .-+...-.|...|+.+.||..|.||++..- .
T Consensus 466 ~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~ 545 (733)
T KOG0650|consen 466 VLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGN 545 (733)
T ss_pred eEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCc
Confidence 444332100 001223357788999999999999987654 3
Q ss_pred CcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeCCCeEEEEEcCCCcceeeecccccceeEEEEEEcCCce
Q 047355 123 KLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKV 202 (312)
Q Consensus 123 ~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 202 (312)
..|.|.++.... ...-|......+..+.|+|... .|++++ ...|+|||+........+......+..+++ ++.|-
T Consensus 546 ~~VliHQLSK~~-sQ~PF~kskG~vq~v~FHPs~p-~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~msi--hp~GD 620 (733)
T KOG0650|consen 546 KSVLIHQLSKRK-SQSPFRKSKGLVQRVKFHPSKP-YLFVAT-QRSVRIYDLSKQELVKKLLTGSKWISSMSI--HPNGD 620 (733)
T ss_pred ceEEEEeccccc-ccCchhhcCCceeEEEecCCCc-eEEEEe-ccceEEEehhHHHHHHHHhcCCeeeeeeee--cCCCC
Confidence 568888876542 1233444556788999999764 444444 567999999887666666555566777764 55566
Q ss_pred EEEEEeCCCeEEEEeCC-CCeEEEEecccccCeEEEEEeCCCcEEEEEeCCCcEEEEeCCC---------cceeeecccC
Q 047355 203 YLITGSDDFTVKVWDYE-TKTCVQILEGHTNNVTAVCFHPELRIIITASEDGTILIWNATT---------FRLQNTLSSG 272 (312)
Q Consensus 203 ~l~sg~~dg~i~vwd~~-~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~s~dg~v~iwd~~~---------~~~~~~~~~~ 272 (312)
-|+.|+.|+.+.+||+. +.++++.+..|...+++++||+.-.++++|+.||++.||--.- .-.+..+.+|
T Consensus 621 nli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH 700 (733)
T KOG0650|consen 621 NLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGH 700 (733)
T ss_pred eEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCc
Confidence 68899999999999986 4578899999999999999999999999999999999994221 1234556666
Q ss_pred ccc----eEEEEEecCCCeEEEEecCCeEEEE
Q 047355 273 LER----VWSIGYKKGSNQVAFGCDNGTLIVK 300 (312)
Q Consensus 273 ~~~----v~~~~~~~~~~~l~~~~~~g~i~v~ 300 (312)
... |..+-|+|.--.|.+++.||+|+++
T Consensus 701 ~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 701 EKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred eeecccceEeecccCCCceEEecCCCceEEee
Confidence 544 8888899999999999999999986
No 130
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.3e-24 Score=179.73 Aligned_cols=265 Identities=16% Similarity=0.253 Sum_probs=210.2
Q ss_pred CeEEEEeccCCceeeeEEec-CCceeEEEEeeCCcEEEEec-CCCeEEEEEccCceeeeeecccccceeEEEEecCCCEE
Q 047355 39 GTVCIWNYHSQTTEKSVKVT-DSPVRTAKFVAREHWIVCGS-DDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFV 116 (312)
Q Consensus 39 g~v~iw~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~l 116 (312)
..+.+||++++...-+++.. ...-.++... .+.+++++. .-..|.+|.+........+..-.++|.+++-+|.|.++
T Consensus 18 ~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l 96 (476)
T KOG0646|consen 18 INCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFL 96 (476)
T ss_pred cceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEE
Confidence 45899999999887777655 2222222222 234555554 45688999887655444334456789999999999999
Q ss_pred EEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeCCCeEEEEEcC---------CCcceeeecccc
Q 047355 117 LTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMD---------SSAAKFTLDAHE 187 (312)
Q Consensus 117 ~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~---------~~~~~~~~~~~~ 187 (312)
+.|+..|.+++|.+.++ ..+..+..|-..+..+.|+. ++.+|++||.||.|.+|.+- +-++...+..|.
T Consensus 97 ~ag~i~g~lYlWelssG-~LL~v~~aHYQ~ITcL~fs~-dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~Ht 174 (476)
T KOG0646|consen 97 LAGTISGNLYLWELSSG-ILLNVLSAHYQSITCLKFSD-DGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHT 174 (476)
T ss_pred EeecccCcEEEEEeccc-cHHHHHHhhccceeEEEEeC-CCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCc
Confidence 98889999999999876 55566788999999999986 66899999999999999873 235667788899
Q ss_pred cceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEecccccCeEEEEEeCCCcEEEEEeCCCcEEEEeCCCcc---
Q 047355 188 KGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITASEDGTILIWNATTFR--- 264 (312)
Q Consensus 188 ~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~s~dg~v~iwd~~~~~--- 264 (312)
.+|+.+.+-..+-..+++++|.|.++++||+..+.++..+. ....+++++.+|-.+.++.|+++|.|.+.++....
T Consensus 175 lsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~ 253 (476)
T KOG0646|consen 175 LSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQS 253 (476)
T ss_pred ceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecCCcceEEeeehhcCCccc
Confidence 99998876555456789999999999999999998887766 46689999999999999999999999998764422
Q ss_pred -------------eeeecccCcc--ceEEEEEecCCCeEEEEecCCeEEEEeccCCCC
Q 047355 265 -------------LQNTLSSGLE--RVWSIGYKKGSNQVAFGCDNGTLIVKIGNSSGC 307 (312)
Q Consensus 265 -------------~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~~g~i~v~~~~~~~~ 307 (312)
....+.+|.. .|.|++++-||..|++|+.||++.||=..|+-|
T Consensus 254 ~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~ 311 (476)
T KOG0646|consen 254 AGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQC 311 (476)
T ss_pred ccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHH
Confidence 2345566665 899999999999999999999999997777655
No 131
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=3.7e-25 Score=181.91 Aligned_cols=235 Identities=19% Similarity=0.309 Sum_probs=180.0
Q ss_pred CCeEEEEecCCeEEEEeccCCce---eee------------------EEecCCceeEEEEeeC-CcEEEEecCCCeEEEE
Q 047355 29 QPWVLASLYSGTVCIWNYHSQTT---EKS------------------VKVTDSPVRTAKFVAR-EHWIVCGSDDKFIRVF 86 (312)
Q Consensus 29 ~~~l~~~~~dg~v~iw~~~~~~~---~~~------------------~~~~~~~v~~~~~~~~-~~~l~~g~~dg~i~iw 86 (312)
|+++|.|..|..|.|||++-... ..+ ...|...|..+.|+.. .+.|++|+.|.+|++|
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW 271 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW 271 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence 57999999999999999853211 111 1134455566666654 4578899999999999
Q ss_pred EccCceeeeeecccccceeEEEEecCC-CEEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeC
Q 047355 87 DYNTMASVKEFEAHEDYIRSLAVHPTF-PFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASL 165 (312)
Q Consensus 87 d~~~~~~~~~~~~h~~~i~~~~~~~~~-~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~ 165 (312)
|+.++++...+..|.++|.++.|+|.. .+|++|+.|++|.+.|.+........+. -...|-.+.|+|...+.|++++.
T Consensus 272 D~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g~VEkv~w~~~se~~f~~~td 350 (463)
T KOG0270|consen 272 DVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-FDGEVEKVAWDPHSENSFFVSTD 350 (463)
T ss_pred EcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-eccceEEEEecCCCceeEEEecC
Confidence 999999999999999999999999865 5788999999999999885322222111 23457778899988899999999
Q ss_pred CCeEEEEEcCCC-cceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeE--EEEecccccCeEEEEEeCC
Q 047355 166 DGTIQIWNMDSS-AAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTC--VQILEGHTNNVTAVCFHPE 242 (312)
Q Consensus 166 dg~v~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~--~~~~~~h~~~i~~l~~~~~ 242 (312)
||+|+-+|+|+. ++..++.+|..+|.++++.. ....++++++.|+.|++|++..... +..-.-.-+...|.++.|+
T Consensus 351 dG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~-~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~ 429 (463)
T KOG0270|consen 351 DGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNI-QTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPD 429 (463)
T ss_pred CceEEeeecCCCCCceeEEEeccCCcceEEecC-CCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCC
Confidence 999999999986 88999999999999998754 3456899999999999999864332 2111111234667777876
Q ss_pred C-cEEEEEeCCCcEEEEeCCCcce
Q 047355 243 L-RIIITASEDGTILIWNATTFRL 265 (312)
Q Consensus 243 ~-~~l~s~s~dg~v~iwd~~~~~~ 265 (312)
- -.+|.|+..+.+++||+.+...
T Consensus 430 ~a~~la~GG~k~~~~vwd~~~~~~ 453 (463)
T KOG0270|consen 430 VAFTLAFGGEKAVLRVWDIFTNSP 453 (463)
T ss_pred cceEEEecCccceEEEeecccChh
Confidence 4 4688888888999999987543
No 132
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=2.8e-24 Score=168.90 Aligned_cols=239 Identities=16% Similarity=0.206 Sum_probs=186.0
Q ss_pred cCCceeEEEEeeC-CcEEEEecCCCeEEEEEccCc-e-eeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCc
Q 047355 58 TDSPVRTAKFVAR-EHWIVCGSDDKFIRVFDYNTM-A-SVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNW 134 (312)
Q Consensus 58 ~~~~v~~~~~~~~-~~~l~~g~~dg~i~iwd~~~~-~-~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~ 134 (312)
.++.|..++|+|. ..+++++++||+||+|+++.. . ..+....|.++|.+++|+.++..+++|+.|+.+++||+..+
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~- 104 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG- 104 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC-
Confidence 4567999999995 445668999999999999762 2 33556789999999999999999999999999999999876
Q ss_pred eeeeEecCCccceEEEEeCCCC-CCEEEEEeCCCeEEEEEcCCCcceeeecccccceeEEEEEEcCCceEEEEEeCCCeE
Q 047355 135 ECTQTFEGHSHYVMQSAFNPKD-LNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTV 213 (312)
Q Consensus 135 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i 213 (312)
....+..|..+|..+.|.+.. ...|++||.|.+|+.||.++..+..+++-. ..+++.+. ...+++.+..++.|
T Consensus 105 -Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LP-eRvYa~Dv----~~pm~vVata~r~i 178 (347)
T KOG0647|consen 105 -QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLP-ERVYAADV----LYPMAVVATAERHI 178 (347)
T ss_pred -CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeecc-ceeeehhc----cCceeEEEecCCcE
Confidence 345678899999999987643 358999999999999999998888776543 34566553 23468889999999
Q ss_pred EEEeCCCCeEEEE-ec-ccccCeEEEEEeCCCcEEEEEeCCCcEEEEeCCCc--ceeeecc---------cCccceEEEE
Q 047355 214 KVWDYETKTCVQI-LE-GHTNNVTAVCFHPELRIIITASEDGTILIWNATTF--RLQNTLS---------SGLERVWSIG 280 (312)
Q Consensus 214 ~vwd~~~~~~~~~-~~-~h~~~i~~l~~~~~~~~l~s~s~dg~v~iwd~~~~--~~~~~~~---------~~~~~v~~~~ 280 (312)
.+|+++++..+.. .. ...-.++||+..++....|.|+-.|++-|..+... +.-.++. .....|.+++
T Consensus 179 ~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~ 258 (347)
T KOG0647|consen 179 AVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIA 258 (347)
T ss_pred EEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceE
Confidence 9999986643321 11 11235899999998888899999999999987654 1111111 1134689999
Q ss_pred EecCCCeEEEEecCCeEEEEecc
Q 047355 281 YKKGSNQVAFGCDNGTLIVKIGN 303 (312)
Q Consensus 281 ~~~~~~~l~~~~~~g~i~v~~~~ 303 (312)
|+|.-..|++++.||+.-+|=-+
T Consensus 259 FhP~hgtlvTaGsDGtf~FWDkd 281 (347)
T KOG0647|consen 259 FHPVHGTLVTAGSDGTFSFWDKD 281 (347)
T ss_pred eecccceEEEecCCceEEEecch
Confidence 99999999999999999888443
No 133
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=8.2e-24 Score=166.67 Aligned_cols=248 Identities=15% Similarity=0.225 Sum_probs=188.9
Q ss_pred hhhcccCcEEEEEEcCCCCeEEEEecCCeEEEEeccCC----ceeeeEEecCCceeEEEEee--CCcEEEEecCCCeEEE
Q 047355 12 EFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQ----TTEKSVKVTDSPVRTAKFVA--REHWIVCGSDDKFIRV 85 (312)
Q Consensus 12 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~----~~~~~~~~~~~~v~~~~~~~--~~~~l~~g~~dg~i~i 85 (312)
--.+|.|-|.++.|++.|+++++|+.|++|+|||..+. ......+.|++.|..+.|.+ =|+.+++++.|+++.+
T Consensus 8 i~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~i 87 (361)
T KOG2445|consen 8 IDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSI 87 (361)
T ss_pred cccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceee
Confidence 34578899999999999999999999999999997433 23345678999999999875 3788999999999999
Q ss_pred EEccC---------ceeeeeecccccceeEEEEecC--CCEEEEEeCCCcEEEEeCCCCcee-----eeEec-------C
Q 047355 86 FDYNT---------MASVKEFEAHEDYIRSLAVHPT--FPFVLTASDDKLIKLWDWEKNWEC-----TQTFE-------G 142 (312)
Q Consensus 86 wd~~~---------~~~~~~~~~h~~~i~~~~~~~~--~~~l~t~s~d~~v~iwd~~~~~~~-----~~~~~-------~ 142 (312)
|.-.. .....++......|+++.|.|. |-.+++++.||.+|||+....... ...+. .
T Consensus 88 WEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~ 167 (361)
T KOG2445|consen 88 WEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGK 167 (361)
T ss_pred eeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccc
Confidence 96421 1123445566778999999885 457899999999999986432211 11121 2
Q ss_pred CccceEEEEeCCCC--CCEEEEEeCC-----CeEEEEEcCCCc----ceeeecccccceeEEEEEEcCC--ceEEEEEeC
Q 047355 143 HSHYVMQSAFNPKD--LNTFASASLD-----GTIQIWNMDSSA----AKFTLDAHEKGINCIDYFITSD--KVYLITGSD 209 (312)
Q Consensus 143 ~~~~v~~~~~~~~~--~~~~~s~s~d-----g~v~iwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~--~~~l~sg~~ 209 (312)
+.....++.|+|.. ..+++.|+.+ +.++||...... .+..+..|..+|+.++|.++-. -..||+++.
T Consensus 168 ~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~k 247 (361)
T KOG2445|consen 168 NKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATK 247 (361)
T ss_pred ccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeec
Confidence 44456677787642 3577888766 478999876554 2345678999999999865432 356899999
Q ss_pred CCeEEEEeCCCC--------------------eEEEEecccccCeEEEEEeCCCcEEEEEeCCCcEEEEeC
Q 047355 210 DFTVKVWDYETK--------------------TCVQILEGHTNNVTAVCFHPELRIIITASEDGTILIWNA 260 (312)
Q Consensus 210 dg~i~vwd~~~~--------------------~~~~~~~~h~~~i~~l~~~~~~~~l~s~s~dg~v~iwd~ 260 (312)
|| |++|.++.. +.+..+.+|+++|..+.|+-.|..|++.|.||.||+|..
T Consensus 248 Dg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWka 317 (361)
T KOG2445|consen 248 DG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKA 317 (361)
T ss_pred Cc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhh
Confidence 99 999987621 234557789999999999999999999999999999974
No 134
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.93 E-value=6e-25 Score=190.36 Aligned_cols=244 Identities=18% Similarity=0.317 Sum_probs=202.9
Q ss_pred cCcEEEEEEcCCCCeEEEEecCCeEEEEeccCCceeeeEEecCCceeEEEEee---CCcEEEEecCCCeEEEEEccCc-e
Q 047355 17 SDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVA---REHWIVCGSDDKFIRVFDYNTM-A 92 (312)
Q Consensus 17 ~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~g~~dg~i~iwd~~~~-~ 92 (312)
.-.|.+++.+|+|++||+|..-|.++||+++..+....+..|+..|.++.|+. ..++|++|+.|.-|.+||.... .
T Consensus 459 r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~ 538 (1080)
T KOG1408|consen 459 RFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYD 538 (1080)
T ss_pred ccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccc
Confidence 34799999999999999999999999999998888888899999999999985 3578999999999999998754 4
Q ss_pred eeeeecccccceeEEEEecCC--CEEEEEeCCCcEEEEeCCCCceeeeEecCCc-----cceEEEEeCCCCCCEEEEEeC
Q 047355 93 SVKEFEAHEDYIRSLAVHPTF--PFVLTASDDKLIKLWDWEKNWECTQTFEGHS-----HYVMQSAFNPKDLNTFASASL 165 (312)
Q Consensus 93 ~~~~~~~h~~~i~~~~~~~~~--~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~~s~s~ 165 (312)
.++.+.+|...|+++.|-..+ ...++++.|+.+.+-- .........|..|. ..+..+...|. ..++++++.
T Consensus 539 l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~-~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~-~k~v~t~cQ 616 (1080)
T KOG1408|consen 539 LVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRV-NQKASSGRLFPRHTQTLSKTTLYDMAVDPT-SKLVVTVCQ 616 (1080)
T ss_pred hhhhhcccccceeEEEEeecCCceEEEeccCchhhheeh-hccccCceeccccccccccceEEEeeeCCC-cceEEEEec
Confidence 678889999999999997666 5678999998876543 22111112222222 34567777774 578999999
Q ss_pred CCeEEEEEcCCCcceeeecccccc-eeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEecccccCeEEEEEeCCCc
Q 047355 166 DGTIQIWNMDSSAAKFTLDAHEKG-INCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELR 244 (312)
Q Consensus 166 dg~v~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~i~~l~~~~~~~ 244 (312)
|..|+|||+.+++....+.+.... -.-+....+|.|.|+++...|.++.++|..+++++..+.||.+-|+.+.|.+|-+
T Consensus 617 Drnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCk 696 (1080)
T KOG1408|consen 617 DRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCK 696 (1080)
T ss_pred ccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccch
Confidence 999999999999998888763322 2344555789999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCcEEEEeCCC
Q 047355 245 IIITASEDGTILIWNATT 262 (312)
Q Consensus 245 ~l~s~s~dg~v~iwd~~~ 262 (312)
.|++.+.||.|.+|.++-
T Consensus 697 HlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 697 HLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred hheeecCCceEEEEECch
Confidence 999999999999999864
No 135
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.93 E-value=5.2e-24 Score=182.30 Aligned_cols=284 Identities=19% Similarity=0.271 Sum_probs=204.6
Q ss_pred EEEEEcCC---CCeEEEEecCCeEEEEeccCCcee------eeEEecCCceeEEEEeeCCcEEEEecCCCeEEEEEccCc
Q 047355 21 KSVDFHPT---QPWVLASLYSGTVCIWNYHSQTTE------KSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTM 91 (312)
Q Consensus 21 ~~~~~~~~---~~~l~~~~~dg~v~iw~~~~~~~~------~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~ 91 (312)
.+..|++. ...|+.+.+||.|.++|....... +....|...|..+.|.+....|++++.|.+++.||+++.
T Consensus 53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s 132 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTS 132 (720)
T ss_pred ccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccc
Confidence 44667642 346778899999999997543222 344568889999999997788999999999999999988
Q ss_pred eeeee--ecccccceeEEEEecCCC-EEEEEeCCCcEEEEeCCCCce-------------------e-------eeEecC
Q 047355 92 ASVKE--FEAHEDYIRSLAVHPTFP-FVLTASDDKLIKLWDWEKNWE-------------------C-------TQTFEG 142 (312)
Q Consensus 92 ~~~~~--~~~h~~~i~~~~~~~~~~-~l~t~s~d~~v~iwd~~~~~~-------------------~-------~~~~~~ 142 (312)
..... +.+|...|.+++|.|.++ .+++|+.||.+.|||++.+.. + ...-..
T Consensus 133 ~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA 212 (720)
T KOG0321|consen 133 RLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKA 212 (720)
T ss_pred eeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccccc
Confidence 77666 889999999999999775 568999999999999754320 0 001112
Q ss_pred CccceEE---EEeCCCCCCEEEEEeC-CCeEEEEEcCCCcceeee--------ccc-ccceeEEEEEEcCCceEEEEEeC
Q 047355 143 HSHYVMQ---SAFNPKDLNTFASASL-DGTIQIWNMDSSAAKFTL--------DAH-EKGINCIDYFITSDKVYLITGSD 209 (312)
Q Consensus 143 ~~~~v~~---~~~~~~~~~~~~s~s~-dg~v~iwd~~~~~~~~~~--------~~~-~~~v~~~~~~~~~~~~~l~sg~~ 209 (312)
+...+.. +.+.. |...|++++. |+.|++||++........ ..| ...+..+.+..+..|.++.+.+.
T Consensus 213 ~s~ti~ssvTvv~fk-De~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCt 291 (720)
T KOG0321|consen 213 ASNTIFSSVTVVLFK-DESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCT 291 (720)
T ss_pred ccCceeeeeEEEEEe-ccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEec
Confidence 2222332 33332 5578888887 999999999976544322 122 11233344445666778887778
Q ss_pred CCeEEEEeCCCC--eEEEEeccccc-CeE-EEEEeCCCcEEEEEeCCCcEEEEeCCCcce-eeecccCccceEEEEEec-
Q 047355 210 DFTVKVWDYETK--TCVQILEGHTN-NVT-AVCFHPELRIIITASEDGTILIWNATTFRL-QNTLSSGLERVWSIGYKK- 283 (312)
Q Consensus 210 dg~i~vwd~~~~--~~~~~~~~h~~-~i~-~l~~~~~~~~l~s~s~dg~v~iwd~~~~~~-~~~~~~~~~~v~~~~~~~- 283 (312)
|+.|++|++.+. .+...+.++.. .++ .-..+|++.++++|+.|...++|.+.+.+. ...+.+|.-.|.+++|.|
T Consensus 292 D~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS 371 (720)
T KOG0321|consen 292 DNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPS 371 (720)
T ss_pred CCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccc
Confidence 999999999753 33444444422 221 224589999999999999999999988654 445667888999999987
Q ss_pred CCCeEEEEecCCeEEEEeccCC
Q 047355 284 GSNQVAFGCDNGTLIVKIGNSS 305 (312)
Q Consensus 284 ~~~~l~~~~~~g~i~v~~~~~~ 305 (312)
...-++++++|-++.||....-
T Consensus 372 ~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 372 ATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred cCCCceeeccCcceEEEeccCc
Confidence 4566888899999999987543
No 136
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.93 E-value=3.1e-24 Score=173.19 Aligned_cols=265 Identities=22% Similarity=0.327 Sum_probs=190.6
Q ss_pred hhhhhhhhhcccCcEEEEEEcCCC--CeEEEEecCCeEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEecCCCeE
Q 047355 6 ELQIEKEFIQKSDRVKSVDFHPTQ--PWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFI 83 (312)
Q Consensus 6 ~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i 83 (312)
++.+......|-+.++.+.-++-+ .+.++=++.|.|+||++... ++.+... +..
T Consensus 140 ~P~~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~--l~~l~~~----------------------~~~ 195 (440)
T KOG0302|consen 140 KPQIEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPH--LNALSEP----------------------GLE 195 (440)
T ss_pred cccccccccccccccceeeecccCCcceeeeecccCcEEEEEchhh--hhhhcCc----------------------ccc
Confidence 345555666777777777777654 34445567899999987532 1111110 000
Q ss_pred EEEEccCceeeeeecccccceeEEEEecCCC-EEEEEeCCCcEEEEeCCCCcee--eeEecCCccceEEEEeCCCCCCEE
Q 047355 84 RVFDYNTMASVKEFEAHEDYIRSLAVHPTFP-FVLTASDDKLIKLWDWEKNWEC--TQTFEGHSHYVMQSAFNPKDLNTF 160 (312)
Q Consensus 84 ~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~-~l~t~s~d~~v~iwd~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~ 160 (312)
.-. ...+++.++.+|...=+.++|+|-.. .+++|..-+.|++|...++.-. ...|.+|+..|-.+.|+|...+.|
T Consensus 196 ~~~--s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vf 273 (440)
T KOG0302|consen 196 VKD--SEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVF 273 (440)
T ss_pred ccc--cccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceE
Confidence 000 33457778889999999999999432 3788888899999987653221 234678999999999999999999
Q ss_pred EEEeCCCeEEEEEcCCCcc--eeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCC---CeEEEEecccccCeE
Q 047355 161 ASASLDGTIQIWNMDSSAA--KFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYET---KTCVQILEGHTNNVT 235 (312)
Q Consensus 161 ~s~s~dg~v~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~---~~~~~~~~~h~~~i~ 235 (312)
++||.||+|+|||+|+.+. .....+|...|+.++| +.+..+||+|+.||++++||+++ ++++..++-|..+|+
T Consensus 274 aScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISW--nr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pIt 351 (440)
T KOG0302|consen 274 ASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISW--NRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPIT 351 (440)
T ss_pred EeeecCceEEEEEecCCCccceeEeeccCCceeeEEc--cCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCee
Confidence 9999999999999998732 3345889999999986 44555899999999999999975 567788999999999
Q ss_pred EEEEeC-CCcEEEEEeCCCcEEEEeCCCcce--------eee--------cccC--ccceEEEEEecCC-CeEEEEecCC
Q 047355 236 AVCFHP-ELRIIITASEDGTILIWNATTFRL--------QNT--------LSSG--LERVWSIGYKKGS-NQVAFGCDNG 295 (312)
Q Consensus 236 ~l~~~~-~~~~l~s~s~dg~v~iwd~~~~~~--------~~~--------~~~~--~~~v~~~~~~~~~-~~l~~~~~~g 295 (312)
+|.|+| +...|++++.|..|.|||++.-+- ... +--| ...+..|.|.+.- .+|++.+-+|
T Consensus 352 sieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG 431 (440)
T KOG0302|consen 352 SIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG 431 (440)
T ss_pred EEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc
Confidence 999998 456899999999999999864211 111 1111 2346677887753 4566666677
Q ss_pred eEE
Q 047355 296 TLI 298 (312)
Q Consensus 296 ~i~ 298 (312)
--.
T Consensus 432 fnV 434 (440)
T KOG0302|consen 432 FNV 434 (440)
T ss_pred eeE
Confidence 543
No 137
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.93 E-value=2.5e-24 Score=184.43 Aligned_cols=133 Identities=21% Similarity=0.280 Sum_probs=111.8
Q ss_pred hhcccCcEEEEEEcCC-CCeEEEEecCCeEEEEeccCCcee------eeEEecCCceeEEEEeeCCcEEEEecCCCeEEE
Q 047355 13 FIQKSDRVKSVDFHPT-QPWVLASLYSGTVCIWNYHSQTTE------KSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRV 85 (312)
Q Consensus 13 ~~~~~~~i~~~~~~~~-~~~l~~~~~dg~v~iw~~~~~~~~------~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~i 85 (312)
+..|.+.|..+.|+|- ...|++|+.|..|+||.+..+-.. ..+...+-.+.++.|++...-|+..+..|.+++
T Consensus 75 l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g~v~i 154 (1012)
T KOG1445|consen 75 LAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHGSVYI 154 (1012)
T ss_pred eecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccCceEEE
Confidence 6678999999999995 457889999999999998743211 123344557889999997766777777899999
Q ss_pred EEccCceeeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEecCCcc
Q 047355 86 FDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSH 145 (312)
Q Consensus 86 wd~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~ 145 (312)
||+.+.+...++.+|.+.|.++.|+.+|+++++...|+.|+|||.+...+.++..++|.+
T Consensus 155 ~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~te~H~~ 214 (1012)
T KOG1445|consen 155 TDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGG 214 (1012)
T ss_pred EEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCccCCCcccccccccc
Confidence 999999999999999999999999999999999999999999999887777887777765
No 138
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.93 E-value=6.1e-24 Score=177.14 Aligned_cols=264 Identities=13% Similarity=0.189 Sum_probs=207.3
Q ss_pred cEEEEEEcCCCC-eEEEEecCCeEEEEeccCC--ceeeeEEecCCceeEEEEeeCCcEEEEecCCCeEEEEEccCceeee
Q 047355 19 RVKSVDFHPTQP-WVLASLYSGTVCIWNYHSQ--TTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVK 95 (312)
Q Consensus 19 ~i~~~~~~~~~~-~l~~~~~dg~v~iw~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~ 95 (312)
.+.++.|+.... .+++.+.|..+++|.-... +....-......-.++.......++++|+..+.|+|||++...+.+
T Consensus 36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr 115 (673)
T KOG4378|consen 36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHR 115 (673)
T ss_pred cceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhh
Confidence 589999987663 3445577889999975543 1111111222233344444556789999999999999999777778
Q ss_pred eecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEecCC-ccceEEEEeCCCCCCEEEEEeCCCeEEEEEc
Q 047355 96 EFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGH-SHYVMQSAFNPKDLNTFASASLDGTIQIWNM 174 (312)
Q Consensus 96 ~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~ 174 (312)
.+++|.+.|+++.++....+|++++..|.|.+..+.+.... ..|... ...+..+.|+|....+|.+++.+|.|.+||.
T Consensus 116 ~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~t-t~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv 194 (673)
T KOG4378|consen 116 FLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKT-TTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDV 194 (673)
T ss_pred hccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccc-cceecCCCCeEEEeecccccceeeEeeccCCeEEEEec
Confidence 88999999999999999999999999999999998765332 234333 3345578899988888999999999999999
Q ss_pred CCCcceee-ecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEecccccCeEEEEEeCCCcEEEEEeCCC
Q 047355 175 DSSAAKFT-LDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITASEDG 253 (312)
Q Consensus 175 ~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~s~dg 253 (312)
....+.+. ...|..+...++|.++ +..+|++-+.|..|++||++..+....+. ...+...++|.++|.+|+.|...|
T Consensus 195 ~g~sp~~~~~~~HsAP~~gicfsps-ne~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G 272 (673)
T KOG4378|consen 195 QGMSPIFHASEAHSAPCRGICFSPS-NEALLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKG 272 (673)
T ss_pred cCCCcccchhhhccCCcCcceecCC-ccceEEEecccceEEEeecccccccceee-ecCCcceeeecCCceEEEeecCCc
Confidence 88776654 4678888888887544 57789999999999999998777666665 466889999999999999999999
Q ss_pred cEEEEeCCCc-ceeeecccCccceEEEEEecCC
Q 047355 254 TILIWNATTF-RLQNTLSSGLERVWSIGYKKGS 285 (312)
Q Consensus 254 ~v~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~ 285 (312)
+|..||++.. .....+..|...|.+++|.|..
T Consensus 273 ~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 273 ELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred eEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 9999999864 4567778888999999998874
No 139
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.93 E-value=6e-24 Score=181.93 Aligned_cols=273 Identities=19% Similarity=0.303 Sum_probs=193.2
Q ss_pred hhhhcccCcEEEEEEcCCCCeEEEEecCCeEEEEeccCCceeee--EEecCCceeEEEEeeCC-cEEEEecCCCeEEEEE
Q 047355 11 KEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKS--VKVTDSPVRTAKFVARE-HWIVCGSDDKFIRVFD 87 (312)
Q Consensus 11 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~--~~~~~~~v~~~~~~~~~-~~l~~g~~dg~i~iwd 87 (312)
+....|...|..+.|-|....|++++.|.++++||+...+.... +.+|...+.+++|.+.+ ..+++|+.||.|.|||
T Consensus 94 k~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD 173 (720)
T KOG0321|consen 94 KKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWD 173 (720)
T ss_pred cccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEE
Confidence 45667899999999999667899999999999999988877665 77899999999999865 4577899999999999
Q ss_pred ccCce---------------------------eeeeecccccceeE---EEEecCCCEEEEEeC-CCcEEEEeCCCCcee
Q 047355 88 YNTMA---------------------------SVKEFEAHEDYIRS---LAVHPTFPFVLTASD-DKLIKLWDWEKNWEC 136 (312)
Q Consensus 88 ~~~~~---------------------------~~~~~~~h~~~i~~---~~~~~~~~~l~t~s~-d~~v~iwd~~~~~~~ 136 (312)
..-.. .+...+.|...|.+ +.+..|+..|+++|. |+.|||||++++...
T Consensus 174 ~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~ 253 (720)
T KOG0321|consen 174 CRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTA 253 (720)
T ss_pred EeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccc
Confidence 64211 01112234444555 555667888998887 999999999865321
Q ss_pred e-------eEecCC---ccceEEEEeCCCCCCEEEEEeCCCeEEEEEcCCCc--ceeeecccccceeEEEEEEcCCceEE
Q 047355 137 T-------QTFEGH---SHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSA--AKFTLDAHEKGINCIDYFITSDKVYL 204 (312)
Q Consensus 137 ~-------~~~~~~---~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l 204 (312)
. ..+..| ...+.++..+..+..++++|. |++|+.|++.+.. +...+.++...-.-+.-..++++.++
T Consensus 254 ~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCt-D~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l 332 (720)
T KOG0321|consen 254 YRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCT-DNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSL 332 (720)
T ss_pred cccCCCcccCccCcccceeeeEEEEecCCCCeEEEEec-CCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceE
Confidence 1 111122 123344555544444555555 9999999998643 34444444433333344568999999
Q ss_pred EEEeCCCeEEEEeCCCCe-EEEEecccccCeEEEEEeCC-CcEEEEEeCCCcEEEEeCCCc--------------ceeee
Q 047355 205 ITGSDDFTVKVWDYETKT-CVQILEGHTNNVTAVCFHPE-LRIIITASEDGTILIWNATTF--------------RLQNT 268 (312)
Q Consensus 205 ~sg~~dg~i~vwd~~~~~-~~~~~~~h~~~i~~l~~~~~-~~~l~s~s~dg~v~iwd~~~~--------------~~~~~ 268 (312)
++|+.|...++|.+.+.+ ....+.+|.-.|++++|.|. -.-+++++.|-++++|++..+ .....
T Consensus 333 ~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l~e~~~adk~s~v~~~~~r 412 (720)
T KOG0321|consen 333 LSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGLEEIYAADKDSIVYEYSRR 412 (720)
T ss_pred eccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCchhhccccccchhhhhhhhh
Confidence 999999999999987643 45667899999999999873 234777799999999998543 22344
Q ss_pred cccCccceEEEEEecC
Q 047355 269 LSSGLERVWSIGYKKG 284 (312)
Q Consensus 269 ~~~~~~~v~~~~~~~~ 284 (312)
++++..++..+.++.-
T Consensus 413 fk~~~p~~~nv~ss~~ 428 (720)
T KOG0321|consen 413 FKGHLPQVLNVNSSLR 428 (720)
T ss_pred hhcccccccccccccc
Confidence 5566666656655443
No 140
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=3.8e-23 Score=162.99 Aligned_cols=237 Identities=16% Similarity=0.177 Sum_probs=185.0
Q ss_pred cCCceeEEEEeeCCcEEEEecCCCeEEEEEccCceeeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceee
Q 047355 58 TDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECT 137 (312)
Q Consensus 58 ~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~ 137 (312)
....|..+.|.+....|+++++||++++|+........+ -.|..++.+++|.+ ...+++|+-||.|+.+|++....
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~-~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~-- 87 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLK-FKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNE-- 87 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhh-eecCCceeeeeccC-CceEEEeccCceEEEEEecCCcc--
Confidence 356799999999999999999999999999988744333 46889999999987 45688999999999999987533
Q ss_pred eEecCCccceEEEEeCCCCCCEEEEEeCCCeEEEEEcCCCcceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEe
Q 047355 138 QTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWD 217 (312)
Q Consensus 138 ~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd 217 (312)
..+..|...+.++.+.+. .+.+++||.|++|++||.++......+... +.|.|++. .+..|+.|+.|..|.+||
T Consensus 88 ~~igth~~~i~ci~~~~~-~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~-kkVy~~~v----~g~~LvVg~~~r~v~iyD 161 (323)
T KOG1036|consen 88 DQIGTHDEGIRCIEYSYE-VGCVISGSWDKTIKFWDPRNKVVVGTFDQG-KKVYCMDV----SGNRLVVGTSDRKVLIYD 161 (323)
T ss_pred eeeccCCCceEEEEeecc-CCeEEEcccCccEEEEeccccccccccccC-ceEEEEec----cCCEEEEeecCceEEEEE
Confidence 356779999999999974 478999999999999999975555554443 36777753 456788999999999999
Q ss_pred CCCCeEEEEec--ccccCeEEEEEeCCCcEEEEEeCCCcEEEEeCCCc----ceeeecccC---------ccceEEEEEe
Q 047355 218 YETKTCVQILE--GHTNNVTAVCFHPELRIIITASEDGTILIWNATTF----RLQNTLSSG---------LERVWSIGYK 282 (312)
Q Consensus 218 ~~~~~~~~~~~--~h~~~i~~l~~~~~~~~l~s~s~dg~v~iwd~~~~----~~~~~~~~~---------~~~v~~~~~~ 282 (312)
+++.......+ ...-.+++|++-|++.-++++|-||+|.+=.+... +....|.-| .-+|.+++|+
T Consensus 162 LRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fh 241 (323)
T KOG1036|consen 162 LRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFH 241 (323)
T ss_pred cccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEec
Confidence 98765433221 12336899999998888999999999876544332 222223322 2369999999
Q ss_pred cCCCeEEEEecCCeEEEEeccC
Q 047355 283 KGSNQVAFGCDNGTLIVKIGNS 304 (312)
Q Consensus 283 ~~~~~l~~~~~~g~i~v~~~~~ 304 (312)
|--+.|++|+.||.|.+|-+..
T Consensus 242 p~~~tfaTgGsDG~V~~Wd~~~ 263 (323)
T KOG1036|consen 242 PIHGTFATGGSDGIVNIWDLFN 263 (323)
T ss_pred cccceEEecCCCceEEEccCcc
Confidence 9999999999999999997763
No 141
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=7.1e-23 Score=161.99 Aligned_cols=276 Identities=12% Similarity=0.204 Sum_probs=207.3
Q ss_pred EEEEEEcCCCCeEEEEecCCeEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEecCCCeEEEEEccCceeeeeecc
Q 047355 20 VKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEA 99 (312)
Q Consensus 20 i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~ 99 (312)
-.++.|++.|.+||+|+.||.|.|||+.+....+.+..|-.+|.+++|+++|+.|++++.|..|.+||+..+.+++.+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir- 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR- 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-
Confidence 6789999999999999999999999999988888888999999999999999999999999999999999998888774
Q ss_pred cccceeEEEEecCCCE-EEEEeCCCcEEEEeCCCCceeeeEec-----CCccceE-EEEeCCCCCCEEEEEeCCCeEEEE
Q 047355 100 HEDYIRSLAVHPTFPF-VLTASDDKLIKLWDWEKNWECTQTFE-----GHSHYVM-QSAFNPKDLNTFASASLDGTIQIW 172 (312)
Q Consensus 100 h~~~i~~~~~~~~~~~-l~t~s~d~~v~iwd~~~~~~~~~~~~-----~~~~~v~-~~~~~~~~~~~~~s~s~dg~v~iw 172 (312)
...+|..+.|+|.... ++..-.+..-.+-++... .+... +..+.+- ...|.+ .++++++|..-|.+.++
T Consensus 105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~---~h~~Lp~d~d~dln~sas~~~fdr-~g~yIitGtsKGkllv~ 180 (405)
T KOG1273|consen 105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDP---KHSVLPKDDDGDLNSSASHGVFDR-RGKYIITGTSKGKLLVY 180 (405)
T ss_pred ccCccceeeeccccCCeEEEEEecCCcEEEEecCC---ceeeccCCCccccccccccccccC-CCCEEEEecCcceEEEE
Confidence 4578999999986533 233333333444444321 11111 1111111 123555 56899999999999999
Q ss_pred EcCCCcceeeecccc-cceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCC-------eEE--EEeccc--ccCeEEEEEe
Q 047355 173 NMDSSAAKFTLDAHE-KGINCIDYFITSDKVYLITGSDDFTVKVWDYETK-------TCV--QILEGH--TNNVTAVCFH 240 (312)
Q Consensus 173 d~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~-------~~~--~~~~~h--~~~i~~l~~~ 240 (312)
|..+.+++..+.... ..+..+. ++..|.+++.-+.|+.|+.|+++.- ++. +.++.- .-.=.+++|+
T Consensus 181 ~a~t~e~vas~rits~~~IK~I~--~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs 258 (405)
T KOG1273|consen 181 DAETLECVASFRITSVQAIKQII--VSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFS 258 (405)
T ss_pred ecchheeeeeeeechheeeeEEE--EeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeec
Confidence 999988776654433 4566554 4667899999999999999997521 111 111110 1123578999
Q ss_pred CCCcEEEEEeCC-CcEEEEeCCCcceeeecccCc-cceEEEEEecCCCeEEEEecCCeEEEEecc
Q 047355 241 PELRIIITASED-GTILIWNATTFRLQNTLSSGL-ERVWSIGYKKGSNQVAFGCDNGTLIVKIGN 303 (312)
Q Consensus 241 ~~~~~l~s~s~d-g~v~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~g~i~v~~~~ 303 (312)
.+|.+++.++.- -.++||....+.+++-+.+.. +....+.|.|-...|++- +.|.++||.-.
T Consensus 259 ~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~ 322 (405)
T KOG1273|consen 259 GDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVV 322 (405)
T ss_pred CCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEee
Confidence 999988877754 469999999999999998877 778899999998888877 88999988643
No 142
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=4.2e-23 Score=163.27 Aligned_cols=237 Identities=18% Similarity=0.262 Sum_probs=183.5
Q ss_pred eeEEEEeeCCcEEEEecCCCeEEEEEccCceeeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEec
Q 047355 62 VRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFE 141 (312)
Q Consensus 62 v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~ 141 (312)
..++.|++-|.+|+.|+.||.|.+||+.+....+.+.+|..+|.+++|+++|++|+|+|.|..+++||+..+. +.+.+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs-~l~rir 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGS-PLKRIR 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCC-ceeEEE
Confidence 6789999999999999999999999999999888999999999999999999999999999999999998764 444443
Q ss_pred CCccceEEEEeCCCCCCEEEEEeCCCeEEEEEcCCCcceeeecccc-cceeEE--EEEEcCCceEEEEEeCCCeEEEEeC
Q 047355 142 GHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHE-KGINCI--DYFITSDKVYLITGSDDFTVKVWDY 218 (312)
Q Consensus 142 ~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~~~-~~v~~~--~~~~~~~~~~l~sg~~dg~i~vwd~ 218 (312)
-..+|....|+|.+.+.++++-.+..-.+-++.... ...+.... ...+.. .-++.+.|.++.+|...|.+.++|.
T Consensus 105 -f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~-h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a 182 (405)
T KOG1273|consen 105 -FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK-HSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDA 182 (405)
T ss_pred -ccCccceeeeccccCCeEEEEEecCCcEEEEecCCc-eeeccCCCccccccccccccccCCCCEEEEecCcceEEEEec
Confidence 346789999999988888888777766676765421 11121111 111111 1135678999999999999999999
Q ss_pred CCCeEEEEecccc-cCeEEEEEeCCCcEEEEEeCCCcEEEEeCCCc-------c--eeeecccCc--cceEEEEEecCCC
Q 047355 219 ETKTCVQILEGHT-NNVTAVCFHPELRIIITASEDGTILIWNATTF-------R--LQNTLSSGL--ERVWSIGYKKGSN 286 (312)
Q Consensus 219 ~~~~~~~~~~~h~-~~i~~l~~~~~~~~l~s~s~dg~v~iwd~~~~-------~--~~~~~~~~~--~~v~~~~~~~~~~ 286 (312)
++.+++..++-.. ..|..+.|+..++.|+..+.|+.||.++++.. + +.+++.... .+=.++.|+.+|.
T Consensus 183 ~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dge 262 (405)
T KOG1273|consen 183 ETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGE 262 (405)
T ss_pred chheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCcc
Confidence 9999988877655 78999999999999999999999999998631 1 122222221 1235788999999
Q ss_pred eEEEEecCC-eEEEEe
Q 047355 287 QVAFGCDNG-TLIVKI 301 (312)
Q Consensus 287 ~l~~~~~~g-~i~v~~ 301 (312)
++.+++... .++||=
T Consensus 263 Yv~a~s~~aHaLYIWE 278 (405)
T KOG1273|consen 263 YVCAGSARAHALYIWE 278 (405)
T ss_pred EEEeccccceeEEEEe
Confidence 999888644 355553
No 143
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.92 E-value=8.4e-24 Score=165.84 Aligned_cols=208 Identities=21% Similarity=0.354 Sum_probs=164.5
Q ss_pred eecccccceeEEEEecC-CCEEEEEeCCCcEEEEeCCCCc--e---------ee---eEecCCccceEEEEeCCCCCCEE
Q 047355 96 EFEAHEDYIRSLAVHPT-FPFVLTASDDKLIKLWDWEKNW--E---------CT---QTFEGHSHYVMQSAFNPKDLNTF 160 (312)
Q Consensus 96 ~~~~h~~~i~~~~~~~~-~~~l~t~s~d~~v~iwd~~~~~--~---------~~---~~~~~~~~~v~~~~~~~~~~~~~ 160 (312)
....|.+.|+++.+.+. ++++++|+.||.+-+||+++.. + ++ ..-.+|.-.|..+.|.|-+...|
T Consensus 38 ~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF 117 (397)
T KOG4283|consen 38 FVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF 117 (397)
T ss_pred eeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCcee
Confidence 34578899999999874 6899999999999999986532 1 00 11245677889999999999999
Q ss_pred EEEeCCCeEEEEEcCCCcceeeecccccceeEEEEEEcC-CceEEEEEeCCCeEEEEeCCCCeEEEEecccccCeEEEEE
Q 047355 161 ASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITS-DKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCF 239 (312)
Q Consensus 161 ~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~i~~l~~ 239 (312)
.++|-|.++++||.++.+....+.- +..|+.-++.+-. .--++|+|..|-.|++-|+.++.+.+.+.+|.+.|.++.|
T Consensus 118 tssSFDhtlKVWDtnTlQ~a~~F~m-e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~W 196 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNTLQEAVDFKM-EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEW 196 (397)
T ss_pred ecccccceEEEeecccceeeEEeec-CceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEe
Confidence 9999999999999998876654432 2233333322211 2346888999999999999999999999999999999999
Q ss_pred eCCCc-EEEEEeCCCcEEEEeCCCc------------cee---eecccCccceEEEEEecCCCeEEEEecCCeEEEEecc
Q 047355 240 HPELR-IIITASEDGTILIWNATTF------------RLQ---NTLSSGLERVWSIGYKKGSNQVAFGCDNGTLIVKIGN 303 (312)
Q Consensus 240 ~~~~~-~l~s~s~dg~v~iwd~~~~------------~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~v~~~~ 303 (312)
+|... .|++|+.||.|++||++.. +.. .+-.+|.+.|..++|..++.++++++.|.++++|...
T Consensus 197 sp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~ 276 (397)
T KOG4283|consen 197 SPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNME 276 (397)
T ss_pred ccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecc
Confidence 99766 4789999999999999642 111 2244677889999999999999999999999999876
Q ss_pred C
Q 047355 304 S 304 (312)
Q Consensus 304 ~ 304 (312)
+
T Consensus 277 ~ 277 (397)
T KOG4283|consen 277 S 277 (397)
T ss_pred c
Confidence 4
No 144
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.92 E-value=6.7e-25 Score=192.81 Aligned_cols=281 Identities=20% Similarity=0.307 Sum_probs=221.2
Q ss_pred hhhhhhhhhcccCcEEEEEEcCCCCeEEEEecCCeEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEecCCCeEEE
Q 047355 6 ELQIEKEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRV 85 (312)
Q Consensus 6 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~i 85 (312)
.+++.+.+.+|...|+|+.|+..|.++++|+.|..|+||..++..+....++|.+.++.++.+.+..++++++.|..|++
T Consensus 179 kmk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrv 258 (1113)
T KOG0644|consen 179 KMKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRV 258 (1113)
T ss_pred HHHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEE
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCceeeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeee------EecCCccceEEEEeCCCCCCE
Q 047355 86 FDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQ------TFEGHSHYVMQSAFNPKDLNT 159 (312)
Q Consensus 86 wd~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~------~~~~~~~~v~~~~~~~~~~~~ 159 (312)
|.+..+.++..+.+|++.|++++|+|-. +.+.||++++||.+- .+.. .+.. ...+....|-. ....
T Consensus 259 Wrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~--~~~~y~prp~~~~~-~~~~~s~~~~~-~~~~ 330 (1113)
T KOG0644|consen 259 WRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARL--EPRIYVPRPLKFTE-KDLVDSILFEN-NGDR 330 (1113)
T ss_pred EecCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccc--cccccCCCCCCccc-ccceeeeeccc-cccc
Confidence 9999999999999999999999999965 788999999999761 1110 1111 12333444432 4567
Q ss_pred EEEEeCCCeEEEEEcCCCcceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEecccccCeEEEEE
Q 047355 160 FASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCF 239 (312)
Q Consensus 160 ~~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~i~~l~~ 239 (312)
+++++.|+.-+.|.+..... +...+.-+.. .+.-..+.+++=.+..+.+|++.++..++.+.+|..++..+.+
T Consensus 331 f~Tgs~d~ea~n~e~~~l~~------~~~~lif~t~-ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~ 403 (1113)
T KOG0644|consen 331 FLTGSRDGEARNHEFEQLAW------RSNLLIFVTR-SSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDV 403 (1113)
T ss_pred cccccCCcccccchhhHhhh------hccceEEEec-cccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeee
Confidence 89999999988887653221 1111111110 0011134555666778899999999999999999999999999
Q ss_pred eC-CCcEEEEEeCCCcEEEEeCCCcceeeecccCccceEEEEEecCCCeEEEEecCCeEEEEe
Q 047355 240 HP-ELRIIITASEDGTILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGCDNGTLIVKI 301 (312)
Q Consensus 240 ~~-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~v~~ 301 (312)
|| +.+...+++.||...|||+-.+-.++.-......+..-+||+||..++...+-|.++|-.
T Consensus 404 Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g 466 (1113)
T KOG0644|consen 404 HPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILG 466 (1113)
T ss_pred cCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEec
Confidence 99 455667999999999999987655444334467788889999999999888888887643
No 145
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.92 E-value=1.1e-20 Score=165.83 Aligned_cols=289 Identities=26% Similarity=0.462 Sum_probs=226.3
Q ss_pred hhhcccCcEEEEEEcCCCCeEEEEecCCeEEEEeccCCc-eeeeEEecC-CceeEEEE-eeCCc-EEEEecC-CCeEEEE
Q 047355 12 EFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQT-TEKSVKVTD-SPVRTAKF-VAREH-WIVCGSD-DKFIRVF 86 (312)
Q Consensus 12 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~-~~~~~~~~~-~~v~~~~~-~~~~~-~l~~g~~-dg~i~iw 86 (312)
.+..+...+..+.|++.+..++.++.|+.+.+|+..... ....+.... ..+....+ .+++. .++..+. |+.+.+|
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence 356788999999999999999999999999999998775 455555433 25666666 66666 4444444 9999999
Q ss_pred EccC-ceeeeeecccccceeEEEEecCCCEEEEEeC-CCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEe
Q 047355 87 DYNT-MASVKEFEAHEDYIRSLAVHPTFPFVLTASD-DKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASAS 164 (312)
Q Consensus 87 d~~~-~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~-d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s 164 (312)
+... ......+..|...|..+.++|++.++++++. |+.+++|+.... .....+.+|...+..+.|.|.....+++++
T Consensus 140 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 218 (466)
T COG2319 140 DLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTG-KPLSTLAGHTDPVSSLAFSPDGGLLIASGS 218 (466)
T ss_pred EecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCC-ceEEeeccCCCceEEEEEcCCcceEEEEec
Confidence 9998 7788889999999999999999998888885 999999998763 455667779999999999975433556669
Q ss_pred CCCeEEEEEcCCCccee-eecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeE-EEEecccccCeEEEEEeCC
Q 047355 165 LDGTIQIWNMDSSAAKF-TLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTC-VQILEGHTNNVTAVCFHPE 242 (312)
Q Consensus 165 ~dg~v~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~-~~~~~~h~~~i~~l~~~~~ 242 (312)
.|+.+++||........ .+..|.... .. .+++++.++++++.|+.+++|+...... +..+.+|...|.++.|+|+
T Consensus 219 ~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 295 (466)
T COG2319 219 SDGTIRLWDLSTGKLLRSTLSGHSDSV-VS--SFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPD 295 (466)
T ss_pred CCCcEEEEECCCCcEEeeecCCCCcce-eE--eECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCC
Confidence 99999999988666666 577776664 22 3567777888999999999999986554 4444678899999999998
Q ss_pred CcEEEEEeCCCcEEEEeCCCcceeeecc--cCccceEEEEEecCCCeEEEE-ecCCeEEEEeccC
Q 047355 243 LRIIITASEDGTILIWNATTFRLQNTLS--SGLERVWSIGYKKGSNQVAFG-CDNGTLIVKIGNS 304 (312)
Q Consensus 243 ~~~l~s~s~dg~v~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~-~~~g~i~v~~~~~ 304 (312)
+..+++++.|+.+.+|+..+........ .+...+..+.|.+++..+..+ ..++.+.+|....
T Consensus 296 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 360 (466)
T COG2319 296 GKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRT 360 (466)
T ss_pred CCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCC
Confidence 8888889999999999988876655554 566678999993333566666 5778887755443
No 146
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=5.4e-24 Score=179.89 Aligned_cols=252 Identities=18% Similarity=0.299 Sum_probs=185.9
Q ss_pred hhhcccCcEEEEEEcCCCCeEEEEecCCeEEEEeccCC--------ceeeeEEecCCceeEEEEeeCCcEEEEecCCCeE
Q 047355 12 EFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQ--------TTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFI 83 (312)
Q Consensus 12 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i 83 (312)
.+..|.+.|++++|+|..+.|+++++||++.+|++++. +.+.+|+.|.+||.+++...+++.+++|+-||+|
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I 368 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTI 368 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCcee
Confidence 45567899999999999999999999999999999432 4556889999999999999999999999999999
Q ss_pred EEEEccC----------ceeeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEecC--CccceEEEE
Q 047355 84 RVFDYNT----------MASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEG--HSHYVMQSA 151 (312)
Q Consensus 84 ~iwd~~~----------~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~--~~~~v~~~~ 151 (312)
+.|++.. ......+.+|++.|..+++++....|++++.||+++.|+...... ..|.. ...+-..+.
T Consensus 369 ~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~--~~f~~~~e~g~Plsvd 446 (577)
T KOG0642|consen 369 RCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP--CTFGEPKEHGYPLSVD 446 (577)
T ss_pred eeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc--cccCCccccCCcceEe
Confidence 9996531 123356789999999999999999999999999999998654322 22221 122233344
Q ss_pred eCCCCCCEEEEEeCCCeEEEEEcCCCcceeeecccc-------cceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEE
Q 047355 152 FNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHE-------KGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCV 224 (312)
Q Consensus 152 ~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~ 224 (312)
+-.....+.++...-+.-.++++........+.... ..++-+ +..+.+.+.+++..|+.|+++|..+++++
T Consensus 447 ~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~v--Vs~~~~~~~~~~hed~~Ir~~dn~~~~~l 524 (577)
T KOG0642|consen 447 RTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKV--VSHPTADITFTAHEDRSIRFFDNKTGKIL 524 (577)
T ss_pred eccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceE--EecCCCCeeEecccCCceecccccccccc
Confidence 332222223333333333344444333333222110 112222 23456678889999999999999999999
Q ss_pred EEecccccCeEEEEEeCCCcEEEEEeCCCcEEEEeCCCcceee
Q 047355 225 QILEGHTNNVTAVCFHPELRIIITASEDGTILIWNATTFRLQN 267 (312)
Q Consensus 225 ~~~~~h~~~i~~l~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~ 267 (312)
+....|...++++++.|+|.+|++++.|+++++|.+.......
T Consensus 525 ~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~ 567 (577)
T KOG0642|consen 525 HSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVL 567 (577)
T ss_pred hheeeccceecceeecCCCceEEeecCCceeehhhccchheee
Confidence 9999999999999999999999999999999999886544433
No 147
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=5.4e-23 Score=169.26 Aligned_cols=273 Identities=19% Similarity=0.326 Sum_probs=194.1
Q ss_pred EEEEEcCCCCeEEEEec-CC--eEEEEeccCCceeeeEEecC-----CceeEEEEee-------CCcEEEEecCCCeEEE
Q 047355 21 KSVDFHPTQPWVLASLY-SG--TVCIWNYHSQTTEKSVKVTD-----SPVRTAKFVA-------REHWIVCGSDDKFIRV 85 (312)
Q Consensus 21 ~~~~~~~~~~~l~~~~~-dg--~v~iw~~~~~~~~~~~~~~~-----~~v~~~~~~~-------~~~~l~~g~~dg~i~i 85 (312)
-.+..-|+...++++-. |+ .+.+|=++... ..-+.+|+ .|+ ++.|.. .+++++.|+.|..|.|
T Consensus 129 de~~V~psDnlIl~ar~eddvs~LEvYVyn~~e-~nlYvHHD~ilpafPL-C~ewld~~~~~~~~gNyvAiGtmdp~IeI 206 (463)
T KOG0270|consen 129 DEEQVKPSDNLILCARNEDDVSYLEVYVYNEEE-ENLYVHHDFILPAFPL-CIEWLDHGSKSGGAGNYVAIGTMDPEIEI 206 (463)
T ss_pred ccceeccCCcEEEEeeccCCceEEEEEEEcCCC-cceeEecceeccCcch-hhhhhhcCCCCCCCcceEEEeccCceeEE
Confidence 34556676666666543 32 34444433322 12233332 121 333332 3679999999999999
Q ss_pred EEccCce---eee------------------eecccccceeEEEEecCC-CEEEEEeCCCcEEEEeCCCCceeeeEecCC
Q 047355 86 FDYNTMA---SVK------------------EFEAHEDYIRSLAVHPTF-PFVLTASDDKLIKLWDWEKNWECTQTFEGH 143 (312)
Q Consensus 86 wd~~~~~---~~~------------------~~~~h~~~i~~~~~~~~~-~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~ 143 (312)
||++=.. +.- .-.+|++.|.+++++..- ..|++||.|.+|++||+... ++...+..|
T Consensus 207 WDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g-~p~~s~~~~ 285 (463)
T KOG0270|consen 207 WDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTG-KPKSSITHH 285 (463)
T ss_pred eccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCC-Ccceehhhc
Confidence 9975211 100 123688899999987654 56789999999999999876 666778889
Q ss_pred ccceEEEEeCCCCCCEEEEEeCCCeEEEEEcCCC---cceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCC
Q 047355 144 SHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSS---AAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYET 220 (312)
Q Consensus 144 ~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~ 220 (312)
...|..+.|+|..+..+++|+.|++|.+.|.|.. .....+. ..|..+.|.+. ....++++..||+|+-+|+++
T Consensus 286 ~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~---g~VEkv~w~~~-se~~f~~~tddG~v~~~D~R~ 361 (463)
T KOG0270|consen 286 GKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFD---GEVEKVAWDPH-SENSFFVSTDDGTVYYFDIRN 361 (463)
T ss_pred CCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEec---cceEEEEecCC-CceeEEEecCCceEEeeecCC
Confidence 9999999999999999999999999999999942 2233333 45666666543 345677889999999999997
Q ss_pred C-eEEEEecccccCeEEEEEeCC-CcEEEEEeCCCcEEEEeCCCc--ceeeecccCccceEEEEEecCCC-eEEEEecCC
Q 047355 221 K-TCVQILEGHTNNVTAVCFHPE-LRIIITASEDGTILIWNATTF--RLQNTLSSGLERVWSIGYKKGSN-QVAFGCDNG 295 (312)
Q Consensus 221 ~-~~~~~~~~h~~~i~~l~~~~~-~~~l~s~s~dg~v~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~g 295 (312)
. +++.++++|.++|.+|++++. ..+++|++.|+.|++|++..- +....-.-..++..|.++.|+.- .|++|+..+
T Consensus 362 ~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~ 441 (463)
T KOG0270|consen 362 PGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKA 441 (463)
T ss_pred CCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccc
Confidence 5 899999999999999999974 467999999999999997642 33333333355677888888654 567788888
Q ss_pred eEEEE
Q 047355 296 TLIVK 300 (312)
Q Consensus 296 ~i~v~ 300 (312)
.++||
T Consensus 442 ~~~vw 446 (463)
T KOG0270|consen 442 VLRVW 446 (463)
T ss_pred eEEEe
Confidence 55555
No 148
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.91 E-value=3.7e-23 Score=164.36 Aligned_cols=242 Identities=20% Similarity=0.291 Sum_probs=190.5
Q ss_pred ccCcEEEEEEcC----CCCeEEEEecCCeEEEEeccCCceeeeEEecCCceeEEEEeeCC-cEEEEecCCCeEEEEEccC
Q 047355 16 KSDRVKSVDFHP----TQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVARE-HWIVCGSDDKFIRVFDYNT 90 (312)
Q Consensus 16 ~~~~i~~~~~~~----~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~g~~dg~i~iwd~~~ 90 (312)
+....+.++|.= ..++|++|+.-|.|+|.|+.+++..+.+..|...|+.+.|.|+. +++++|+.|..|++|++++
T Consensus 88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~ 167 (385)
T KOG1034|consen 88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQT 167 (385)
T ss_pred CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccC
Confidence 456788888863 25799999999999999999999999999999999999999964 6889999999999999999
Q ss_pred ceeeeee---cccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCc-----eee----------------------eEe
Q 047355 91 MASVKEF---EAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNW-----ECT----------------------QTF 140 (312)
Q Consensus 91 ~~~~~~~---~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~-----~~~----------------------~~~ 140 (312)
..++..+ ++|.+.|.++.|++++.++++++.|.++++|+++... +.. .+-
T Consensus 168 ~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~ 247 (385)
T KOG1034|consen 168 DVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTT 247 (385)
T ss_pred CeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccccc
Confidence 9888776 6899999999999999999999999999999986210 000 012
Q ss_pred cCCccceEEEEeCCCCCCEEEEEeCCCeEEEEEcCC-Ccc-------------eeeecccccceeEEEEEEcCCceEEEE
Q 047355 141 EGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDS-SAA-------------KFTLDAHEKGINCIDYFITSDKVYLIT 206 (312)
Q Consensus 141 ~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~-~~~-------------~~~~~~~~~~v~~~~~~~~~~~~~l~s 206 (312)
.-|..+|-++.|. ++++++=|-++.|..|.... .+. ...+.-....+..+.+.+++-+.+||.
T Consensus 248 diHrnyVDCvrw~---gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~ 324 (385)
T KOG1034|consen 248 DIHRNYVDCVRWF---GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLAL 324 (385)
T ss_pred ccccchHHHHHHH---hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhh
Confidence 3456666666664 26788888899999998722 111 112222334455667777888899999
Q ss_pred EeCCCeEEEEeCCCCeEEE--Eec--ccccCeEEEEEeCCCcEEEEEeCCCcEEEEeC
Q 047355 207 GSDDFTVKVWDYETKTCVQ--ILE--GHTNNVTAVCFHPELRIIITASEDGTILIWNA 260 (312)
Q Consensus 207 g~~dg~i~vwd~~~~~~~~--~~~--~h~~~i~~l~~~~~~~~l~s~s~dg~v~iwd~ 260 (312)
|.+.|.|.+||++...+.. ++. .-...|+..+|+.|+..|+...+|++|.-||-
T Consensus 325 gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 325 GNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred ccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 9999999999998765421 121 11357999999999999999999999999984
No 149
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.91 E-value=2.7e-22 Score=159.24 Aligned_cols=274 Identities=19% Similarity=0.283 Sum_probs=208.3
Q ss_pred EEEEEEcCCCCeEEEEecCCeEEEEeccCCc------------eeeeEEe-cCCceeEEEEe-------eCCcEEEEecC
Q 047355 20 VKSVDFHPTQPWVLASLYSGTVCIWNYHSQT------------TEKSVKV-TDSPVRTAKFV-------AREHWIVCGSD 79 (312)
Q Consensus 20 i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~------------~~~~~~~-~~~~v~~~~~~-------~~~~~l~~g~~ 79 (312)
.....|+|||..+++-+.|..+++|++...- ....++. ....|...+|. |+..+.++.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 4667899999999999999999999985321 1111221 12345555554 45667888899
Q ss_pred CCeEEEEEccCceeeeeec--ccccce---eEEEEecCCCEEEEEeCCCcEEEEeCCC-Ccee-ee-----EecCCccce
Q 047355 80 DKFIRVFDYNTMASVKEFE--AHEDYI---RSLAVHPTFPFVLTASDDKLIKLWDWEK-NWEC-TQ-----TFEGHSHYV 147 (312)
Q Consensus 80 dg~i~iwd~~~~~~~~~~~--~h~~~i---~~~~~~~~~~~l~t~s~d~~v~iwd~~~-~~~~-~~-----~~~~~~~~v 147 (312)
+.-|.+||.-+++....+. .|.+.+ .+++|+|+|.+|+ ++....|++||+.+ +..+ .. ...+....+
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlf-aGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~gii 210 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLF-AGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGII 210 (406)
T ss_pred cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEe-ecccceEEEeeccCCCCCCcchhhhhccccccccee
Confidence 9999999998887665554 344444 5799999999987 45578999999843 2111 11 123446678
Q ss_pred EEEEeCCCCCCEEEEEeCCCeEEEEEcCCCcceeeecccccceeEEEEEEcCCceEEEEEeC-CCeEEEEeCCC-CeEEE
Q 047355 148 MQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSD-DFTVKVWDYET-KTCVQ 225 (312)
Q Consensus 148 ~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~-dg~i~vwd~~~-~~~~~ 225 (312)
.+.+|+|.+...++.++...++-||.-....+.+.+.+|..+|+-+.| .++|..|.+|+. |-.|..||++. ..++.
T Consensus 211 sc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~--~edGn~lfsGaRk~dkIl~WDiR~~~~pv~ 288 (406)
T KOG2919|consen 211 SCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQW--CEDGNKLFSGARKDDKILCWDIRYSRDPVY 288 (406)
T ss_pred eeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEe--ccCcCeecccccCCCeEEEEeehhccchhh
Confidence 889999999889999999999999999999999999999999999986 567778888874 67899999985 45566
Q ss_pred Eeccccc-CeEEEEE--eCCCcEEEEEeCCCcEEEEeCCC-cceeeecccCccceEEEEEecCCCeEEEEecCCe
Q 047355 226 ILEGHTN-NVTAVCF--HPELRIIITASEDGTILIWNATT-FRLQNTLSSGLERVWSIGYKKGSNQVAFGCDNGT 296 (312)
Q Consensus 226 ~~~~h~~-~i~~l~~--~~~~~~l~s~s~dg~v~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~ 296 (312)
.+..|.+ .-..|-| .|++++|++|+.||.|++||+++ +.....+..+...+..++++|--..+|+++.+..
T Consensus 289 ~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGqr~ 363 (406)
T KOG2919|consen 289 ALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQRI 363 (406)
T ss_pred hhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCcee
Confidence 6667766 3334555 58899999999999999999988 5556667777788999999999888888776554
No 150
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=2.7e-22 Score=178.29 Aligned_cols=241 Identities=17% Similarity=0.246 Sum_probs=197.6
Q ss_pred ecCCceeEEEEeeCCcEEEEecCCCeEEEEEccCc-eeeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCce
Q 047355 57 VTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTM-ASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWE 135 (312)
Q Consensus 57 ~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~-~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~ 135 (312)
.|....+.++|.+++++|++++.||.|++|+.... +....+..+...|.+++... .++++|+.+++|..|.......
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s--~~f~~~s~~~tv~~y~fps~~~ 88 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYS--NHFLTGSEQNTVLRYKFPSGEE 88 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecc--cceEEeeccceEEEeeCCCCCc
Confidence 45566889999999999999999999999987665 33344444788888888654 4799999999999998765422
Q ss_pred eeeEecCCccceEEEEeCCCCCCEEEEEeCCCeEEEEEcCCCcceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEE
Q 047355 136 CTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKV 215 (312)
Q Consensus 136 ~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~v 215 (312)
. ..+..-+-++..++|+. ++..++.||.|-.|++.++........+.+|..+|.++++ .|++.+||+.+.||.|++
T Consensus 89 ~-~iL~Rftlp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~--~p~~~fLAvss~dG~v~i 164 (933)
T KOG1274|consen 89 D-TILARFTLPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSY--DPKGNFLAVSSCDGKVQI 164 (933)
T ss_pred c-ceeeeeeccceEEEEec-CCcEEEeecCceeEEEEeccccchheeecccCCceeeeeE--cCCCCEEEEEecCceEEE
Confidence 1 12222334667778875 5689999999999999999999889999999999999986 678999999999999999
Q ss_pred EeCCCCeEEEEeccc--------ccCeEEEEEeCCCcEEEEEeCCCcEEEEeCCCcceeeecccC--ccceEEEEEecCC
Q 047355 216 WDYETKTCVQILEGH--------TNNVTAVCFHPELRIIITASEDGTILIWNATTFRLQNTLSSG--LERVWSIGYKKGS 285 (312)
Q Consensus 216 wd~~~~~~~~~~~~h--------~~~i~~l~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~--~~~v~~~~~~~~~ 285 (312)
||+.++.+.+.+.+- ...+..++|+|++..++..+.|+.|.+++..+++....+... ...+..+.|+|.|
T Consensus 165 w~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG 244 (933)
T KOG1274|consen 165 WDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNG 244 (933)
T ss_pred EEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCC
Confidence 999988877666532 234678899999989999999999999999998776655542 3448999999999
Q ss_pred CeEEEEecCCeEEEEecc
Q 047355 286 NQVAFGCDNGTLIVKIGN 303 (312)
Q Consensus 286 ~~l~~~~~~g~i~v~~~~ 303 (312)
++||+++-||.|.||..+
T Consensus 245 ~YiAAs~~~g~I~vWnv~ 262 (933)
T KOG1274|consen 245 KYIAASTLDGQILVWNVD 262 (933)
T ss_pred cEEeeeccCCcEEEEecc
Confidence 999999999999999887
No 151
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=4.9e-24 Score=193.36 Aligned_cols=287 Identities=17% Similarity=0.303 Sum_probs=216.1
Q ss_pred CcEEEEEEcCCCC-eEEEEe----------cCCeEEEEeccCCcee------eeEEecCCceeEEEEeeCCcE----EEE
Q 047355 18 DRVKSVDFHPTQP-WVLASL----------YSGTVCIWNYHSQTTE------KSVKVTDSPVRTAKFVAREHW----IVC 76 (312)
Q Consensus 18 ~~i~~~~~~~~~~-~l~~~~----------~dg~v~iw~~~~~~~~------~~~~~~~~~v~~~~~~~~~~~----l~~ 76 (312)
++--.++|+|+++ ++++|. .+.++.||.++..... ..+ ........++|.+.+.. |+.
T Consensus 7 ~Rta~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~-~s~~rF~kL~W~~~g~~~~GlIaG 85 (1049)
T KOG0307|consen 7 SRTATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSL-QSSNRFNKLAWGSYGSHSHGLIAG 85 (1049)
T ss_pred cccceEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccc-cccccceeeeecccCCCccceeec
Confidence 3445689999987 566553 2445677765432221 111 12345677888776554 888
Q ss_pred ecCCCeEEEEEccCc------eeeeeecccccceeEEEEecCCC-EEEEEeCCCcEEEEeCCCCceeeeE-ecCCccceE
Q 047355 77 GSDDKFIRVFDYNTM------ASVKEFEAHEDYIRSLAVHPTFP-FVLTASDDKLIKLWDWEKNWECTQT-FEGHSHYVM 148 (312)
Q Consensus 77 g~~dg~i~iwd~~~~------~~~~~~~~h~~~i~~~~~~~~~~-~l~t~s~d~~v~iwd~~~~~~~~~~-~~~~~~~v~ 148 (312)
|.+||.|.+||.... ..+..+..|++.|..+.|++... .+++|+.||.|.|||++........ -......|.
T Consensus 86 G~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~ 165 (1049)
T KOG0307|consen 86 GLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIK 165 (1049)
T ss_pred cccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccce
Confidence 899999999997653 24456788999999999999766 8899999999999999864332221 122446788
Q ss_pred EEEeCCCCCCEEEEEeCCCeEEEEEcCCCcceeeecccccc--eeEEEEEEcCCceEEEEEeCCC---eEEEEeCCC-Ce
Q 047355 149 QSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKG--INCIDYFITSDKVYLITGSDDF---TVKVWDYET-KT 222 (312)
Q Consensus 149 ~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~l~sg~~dg---~i~vwd~~~-~~ 222 (312)
.+.|+.+....|++++.+|++.|||++..+++..+..+... +..+.|.++.. ..++++++|. .|.+||++. ..
T Consensus 166 ~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~a-Tql~~As~dd~~PviqlWDlR~ass 244 (1049)
T KOG0307|consen 166 CLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHA-TQLLVASGDDSAPVIQLWDLRFASS 244 (1049)
T ss_pred EeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCc-eeeeeecCCCCCceeEeecccccCC
Confidence 99999888889999999999999999999887776655443 45566654433 3455555443 599999874 45
Q ss_pred EEEEecccccCeEEEEEeCC-CcEEEEEeCCCcEEEEeCCCcceeeecccCccceEEEEEec-CCCeEEEEecCCeEEEE
Q 047355 223 CVQILEGHTNNVTAVCFHPE-LRIIITASEDGTILIWNATTFRLQNTLSSGLERVWSIGYKK-GSNQVAFGCDNGTLIVK 300 (312)
Q Consensus 223 ~~~~~~~h~~~i~~l~~~~~-~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~g~i~v~ 300 (312)
+++.+++|...|.++.|.+. .++|++++.|+.|.+|+.++++.+.++.....-...+.|.| +...++.++=||+|.|-
T Consensus 245 P~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~ 324 (1049)
T KOG0307|consen 245 PLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIY 324 (1049)
T ss_pred chhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeee
Confidence 77888999999999999985 48999999999999999999999999998888899999998 45688899999998876
Q ss_pred eccCCC
Q 047355 301 IGNSSG 306 (312)
Q Consensus 301 ~~~~~~ 306 (312)
-..+-+
T Consensus 325 sl~~~~ 330 (1049)
T KOG0307|consen 325 SLQGTD 330 (1049)
T ss_pred eeecCC
Confidence 554443
No 152
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.91 E-value=4.3e-23 Score=172.43 Aligned_cols=238 Identities=14% Similarity=0.256 Sum_probs=197.2
Q ss_pred ccCcEEEEEEcCCCCeEEEEecCCeEEEEeccCCceeeeE--EecCCceeEEEEeeCCcEEEEecCCCeEEEEEccCcee
Q 047355 16 KSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSV--KVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMAS 93 (312)
Q Consensus 16 ~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~ 93 (312)
...-|.+.-..|||+.|++|++-.++.|||+......... ........+++.++|.+.++++..||.|.+||+.+...
T Consensus 464 rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~ 543 (705)
T KOG0639|consen 464 RDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTL 543 (705)
T ss_pred cccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEccccee
Confidence 4567899999999999999999999999999765443322 22334567788899999999999999999999999999
Q ss_pred eeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeCCCeEEEEE
Q 047355 94 VKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWN 173 (312)
Q Consensus 94 ~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd 173 (312)
+..+++|.+.+.||.++++|..|-||+-|.+||.||++...+..+. .-...|+++.+.|. ..+++.|-+++.+.+..
T Consensus 544 VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqh--dF~SQIfSLg~cP~-~dWlavGMens~vevlh 620 (705)
T KOG0639|consen 544 VRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQH--DFSSQIFSLGYCPT-GDWLAVGMENSNVEVLH 620 (705)
T ss_pred eecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhh--hhhhhheecccCCC-ccceeeecccCcEEEEe
Confidence 9999999999999999999999999999999999998765332210 11356788888985 58999999999988877
Q ss_pred cCCCcceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEecccccCeEEEEEeCCCcEEEEEeCCC
Q 047355 174 MDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITASEDG 253 (312)
Q Consensus 174 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~s~dg 253 (312)
.. +...+.+..|+..|.++.| .+-|+++++-+.|..+..|.+--+..+...+ ..+.|.++..+.|.++++|||.|.
T Consensus 621 ~s-kp~kyqlhlheScVLSlKF--a~cGkwfvStGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGSGdk 696 (705)
T KOG0639|consen 621 TS-KPEKYQLHLHESCVLSLKF--AYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGSGDK 696 (705)
T ss_pred cC-CccceeecccccEEEEEEe--cccCceeeecCchhhhhhccCccccceeecc-ccCcceeeeeccCceEEEecCCCc
Confidence 64 3445667778888888875 5678999999999999999887777666555 467899999999999999999999
Q ss_pred cEEEEeC
Q 047355 254 TILIWNA 260 (312)
Q Consensus 254 ~v~iwd~ 260 (312)
...+|.+
T Consensus 697 kATVYeV 703 (705)
T KOG0639|consen 697 KATVYEV 703 (705)
T ss_pred ceEEEEE
Confidence 8888864
No 153
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.91 E-value=7.1e-22 Score=157.10 Aligned_cols=282 Identities=20% Similarity=0.399 Sum_probs=208.7
Q ss_pred hhcccCcEEEEEEcC----CCCeEEEEecCCeEEEEeccCCceeeeEEe-----cCCceeEEEEeeC----CcEEEEecC
Q 047355 13 FIQKSDRVKSVDFHP----TQPWVLASLYSGTVCIWNYHSQTTEKSVKV-----TDSPVRTAKFVAR----EHWIVCGSD 79 (312)
Q Consensus 13 ~~~~~~~i~~~~~~~----~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~-----~~~~v~~~~~~~~----~~~l~~g~~ 79 (312)
...|..+|..++|++ +.+.+++......+.+|.......++.++. ++.....++|.-+ ..++++|+.
T Consensus 34 ~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~ 113 (385)
T KOG1034|consen 34 KEDHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGY 113 (385)
T ss_pred hccCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecc
Confidence 345678999999985 456677766777889998765433333321 3345666777643 457888999
Q ss_pred CCeEEEEEccCceeeeeecccccceeEEEEecCC-CEEEEEeCCCcEEEEeCCCCceeee---EecCCccceEEEEeCCC
Q 047355 80 DKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTF-PFVLTASDDKLIKLWDWEKNWECTQ---TFEGHSHYVMQSAFNPK 155 (312)
Q Consensus 80 dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~-~~l~t~s~d~~v~iwd~~~~~~~~~---~~~~~~~~v~~~~~~~~ 155 (312)
-|.|++.|+.+++..+.+.+|...|+.+.++|.. ++++++|.|.+||+|++++. .++. -+++|...|.++.|++.
T Consensus 114 ~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~-~Cv~VfGG~egHrdeVLSvD~~~~ 192 (385)
T KOG1034|consen 114 LGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTD-VCVAVFGGVEGHRDEVLSVDFSLD 192 (385)
T ss_pred eeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCC-eEEEEecccccccCcEEEEEEcCC
Confidence 9999999999999999999999999999999986 57789999999999999875 4443 35789999999999985
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCccee----------------------------eecccccceeEEEEEEcCCceEEEEE
Q 047355 156 DLNTFASASLDGTIQIWNMDSSAAKF----------------------------TLDAHEKGINCIDYFITSDKVYLITG 207 (312)
Q Consensus 156 ~~~~~~s~s~dg~v~iwd~~~~~~~~----------------------------~~~~~~~~v~~~~~~~~~~~~~l~sg 207 (312)
+..+++|+.|.++++|++...+-.. +..-|...|.|+.|. |.++++=
T Consensus 193 -gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~----gd~ilSk 267 (385)
T KOG1034|consen 193 -GDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF----GDFILSK 267 (385)
T ss_pred -CCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH----hhheeec
Confidence 5799999999999999997321100 112344445555442 4678898
Q ss_pred eCCCeEEEEeCCC-C-------------eEEEEecccccCeEEEEE--eCCCcEEEEEeCCCcEEEEeCCCccee--eec
Q 047355 208 SDDFTVKVWDYET-K-------------TCVQILEGHTNNVTAVCF--HPELRIIITASEDGTILIWNATTFRLQ--NTL 269 (312)
Q Consensus 208 ~~dg~i~vwd~~~-~-------------~~~~~~~~h~~~i~~l~~--~~~~~~l~s~s~dg~v~iwd~~~~~~~--~~~ 269 (312)
|.++.|..|.... . ..+..+.-....|+-+.| +|-+++||.|...|.|.+||+...+.. .++
T Consensus 268 scenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl 347 (385)
T KOG1034|consen 268 SCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTL 347 (385)
T ss_pred ccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceE
Confidence 8899999997621 1 122333444556776655 567889999999999999999875542 122
Q ss_pred cc--CccceEEEEEecCCCeEEEEecCCeEEEE
Q 047355 270 SS--GLERVWSIGYKKGSNQVAFGCDNGTLIVK 300 (312)
Q Consensus 270 ~~--~~~~v~~~~~~~~~~~l~~~~~~g~i~v~ 300 (312)
.- ....|...+|+.|+..|+..++|++|.=|
T Consensus 348 ~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrw 380 (385)
T KOG1034|consen 348 THSKSGSTVRQTSFSRDGSILVLVCDDGTVWRW 380 (385)
T ss_pred EeccccceeeeeeecccCcEEEEEeCCCcEEEE
Confidence 21 24568999999999999999999998654
No 154
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=4.8e-23 Score=165.64 Aligned_cols=245 Identities=16% Similarity=0.238 Sum_probs=192.4
Q ss_pred hhhhhhhcccCcEEEEEEcCCCCeEEEEecCCeEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEecCCCeEEEEE
Q 047355 8 QIEKEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFD 87 (312)
Q Consensus 8 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd 87 (312)
.+++.|..|.+-|..|+++. ..+++++.|.+|+.|.++.. +..++ ..++.+..+..+..+..++|+++ .|-|||
T Consensus 100 ~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~-p~~ti-lg~s~~~gIdh~~~~~~FaTcGe--~i~IWD 173 (433)
T KOG0268|consen 100 ECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGP-PLHTI-LGKSVYLGIDHHRKNSVFATCGE--QIDIWD 173 (433)
T ss_pred hhhheeecccCceeeEEecc--cceEEecCCcceeeeeccCC-cceee-eccccccccccccccccccccCc--eeeecc
Confidence 45677888999999999987 67899999999999998763 44444 33445666666666677777775 589999
Q ss_pred ccCceeeeeecccccceeEEEEecCCCE-EEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeCC
Q 047355 88 YNTMASVKEFEAHEDYIRSLAVHPTFPF-VLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLD 166 (312)
Q Consensus 88 ~~~~~~~~~~~~h~~~i~~~~~~~~~~~-l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d 166 (312)
.....+++.+.-..+.|.++.|+|.... |++++.|+.|.+||.+......+.... -.-..++|+| +.-.|+++++|
T Consensus 174 ~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~--mRTN~IswnP-eafnF~~a~ED 250 (433)
T KOG0268|consen 174 EQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILT--MRTNTICWNP-EAFNFVAANED 250 (433)
T ss_pred cccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeee--ccccceecCc-cccceeecccc
Confidence 9888888888888889999999998765 567779999999999876433222211 1234578999 66789999999
Q ss_pred CeEEEEEcCCCc-ceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEeccc-ccCeEEEEEeCCCc
Q 047355 167 GTIQIWNMDSSA-AKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGH-TNNVTAVCFHPELR 244 (312)
Q Consensus 167 g~v~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h-~~~i~~l~~~~~~~ 244 (312)
..++.||++... +.....+|-.+|..++| +|.|.-+++||.|.+|++|....+.....+... ...|.++.|+.|.+
T Consensus 251 ~nlY~~DmR~l~~p~~v~~dhvsAV~dVdf--sptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dsk 328 (433)
T KOG0268|consen 251 HNLYTYDMRNLSRPLNVHKDHVSAVMDVDF--SPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSK 328 (433)
T ss_pred ccceehhhhhhcccchhhcccceeEEEecc--CCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEecccc
Confidence 999999999754 45556788888888885 677888999999999999998876655444221 34699999999999
Q ss_pred EEEEEeCCCcEEEEeCCCc
Q 047355 245 IIITASEDGTILIWNATTF 263 (312)
Q Consensus 245 ~l~s~s~dg~v~iwd~~~~ 263 (312)
++++||.|+.||+|.....
T Consensus 329 yi~SGSdd~nvRlWka~As 347 (433)
T KOG0268|consen 329 YIISGSDDGNVRLWKAKAS 347 (433)
T ss_pred EEEecCCCcceeeeecchh
Confidence 9999999999999986543
No 155
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=3.6e-23 Score=174.98 Aligned_cols=253 Identities=19% Similarity=0.269 Sum_probs=192.5
Q ss_pred eEEecCCceeEEEEeeCCcEEEEecCCCeEEEEEccC--------ceeeeeecccccceeEEEEecCCCEEEEEeCCCcE
Q 047355 54 SVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNT--------MASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLI 125 (312)
Q Consensus 54 ~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~--------~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v 125 (312)
++..|...++...|.+....|++|+.||+|++|+++. .+++.++.+|.++|.|+++.+.+..+.+|+-||+|
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I 368 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTI 368 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCcee
Confidence 3445667889999999999999999999999999832 34677899999999999999999999999999999
Q ss_pred EEEeCCCCc---------eeeeEecCCccceEEEEeCCCCCCEEEEEeCCCeEEEEEcCCCcceeeeccccc--ceeEEE
Q 047355 126 KLWDWEKNW---------ECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEK--GINCID 194 (312)
Q Consensus 126 ~iwd~~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~~~~--~v~~~~ 194 (312)
+.|++..+. .....+.||...++.+.+++. ...+++|+.||+++.|+.....+ .++..... -...++
T Consensus 369 ~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~-~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd 446 (577)
T KOG0642|consen 369 RCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSST-KDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVD 446 (577)
T ss_pred eeeccCCCCCcccccCcchhccceeccccceeeeeeccc-ccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEe
Confidence 999654221 223467899999999999975 46799999999999999877665 22322222 123344
Q ss_pred EEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEeccc-------ccCeEEEEEeCCCcEEEEEeCCCcEEEEeCCCcceee
Q 047355 195 YFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGH-------TNNVTAVCFHPELRIIITASEDGTILIWNATTFRLQN 267 (312)
Q Consensus 195 ~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h-------~~~i~~l~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~ 267 (312)
+. +.+-...++...-+.--+++++....+..+..- ...+.-+..+|...+.+++..|+.|+++|..++++++
T Consensus 447 ~~-ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~ 525 (577)
T KOG0642|consen 447 RT-SSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILH 525 (577)
T ss_pred ec-cchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccch
Confidence 32 112111222222222223334434333333211 1347788899999999999999999999999999999
Q ss_pred ecccCccceEEEEEecCCCeEEEEecCCeEEEEeccCCCCcc
Q 047355 268 TLSSGLERVWSIGYKKGSNQVAFGCDNGTLIVKIGNSSGCDS 309 (312)
Q Consensus 268 ~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~v~~~~~~~~~~ 309 (312)
.+.+|...+.++++.|+|-+|++++.||.+++|..+.+.|-.
T Consensus 526 s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~ 567 (577)
T KOG0642|consen 526 SMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVL 567 (577)
T ss_pred heeeccceecceeecCCCceEEeecCCceeehhhccchheee
Confidence 999999999999999999999999999999999999888854
No 156
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1e-21 Score=155.74 Aligned_cols=238 Identities=17% Similarity=0.238 Sum_probs=168.4
Q ss_pred eEEecCCceeEEEEeeCCcEEEEecCCCeEEEEEccCceeee-e-e--cccccceeEEEEecCCCE-EEEEeCCCcEEEE
Q 047355 54 SVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVK-E-F--EAHEDYIRSLAVHPTFPF-VLTASDDKLIKLW 128 (312)
Q Consensus 54 ~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~-~-~--~~h~~~i~~~~~~~~~~~-l~t~s~d~~v~iw 128 (312)
.+.+|...|+.++|+.+|+.|++++.|++|++|+++...... . + ...-+--+.++|.|+-+- +++.-...++++|
T Consensus 81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vy 160 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVY 160 (420)
T ss_pred hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEE
Confidence 456788999999999999999999999999999998753210 0 0 001123577899998764 4566667789998
Q ss_pred eCCCCceee-----------eEecCCccceEEEEeCCCCCCEEEEEeCCCeEEEEEcCCCcceeeecccccceeEEEEEE
Q 047355 129 DWEKNWECT-----------QTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFI 197 (312)
Q Consensus 129 d~~~~~~~~-----------~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~ 197 (312)
.+.....-. ..-+.|.-.+...... .+..++++++.|..|.+|+++ ++.+..+...+..-+- ...
T Consensus 161 k~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA-~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~--aav 236 (420)
T KOG2096|consen 161 KLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIA-GNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYD--AAV 236 (420)
T ss_pred EeeecccCCCCcccccccccccchhcccceEEEeec-CCceEEEEecCCCcEEEEecC-Cceeeeeccccccccc--eee
Confidence 753221100 0112244445554443 245789999999999999998 6666666554433332 236
Q ss_pred cCCceEEEEEeCCCeEEEEeCC---CC-----eEEEEecccccCeEEEEEeCCCcEEEEEeCCCcEEEEeCCC-------
Q 047355 198 TSDKVYLITGSDDFTVKVWDYE---TK-----TCVQILEGHTNNVTAVCFHPELRIIITASEDGTILIWNATT------- 262 (312)
Q Consensus 198 ~~~~~~l~sg~~dg~i~vwd~~---~~-----~~~~~~~~h~~~i~~l~~~~~~~~l~s~s~dg~v~iwd~~~------- 262 (312)
+|+|+++++++..-.|+||..- .+ .....+++|.+.|+.++|+++.+.+++.|.||++||||+.-
T Consensus 237 SP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qD 316 (420)
T KOG2096|consen 237 SPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQD 316 (420)
T ss_pred CCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCC
Confidence 8999999999999999999852 22 34567899999999999999999999999999999999753
Q ss_pred cceeeecc----cCccceEEEEEecCCCeEEEEecCC
Q 047355 263 FRLQNTLS----SGLERVWSIGYKKGSNQVAFGCDNG 295 (312)
Q Consensus 263 ~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~~g 295 (312)
.+.+++.. ........++.+|.|+.||.+....
T Consensus 317 pk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~ 353 (420)
T KOG2096|consen 317 PKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSD 353 (420)
T ss_pred chHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCc
Confidence 12222221 2223345899999999998766544
No 157
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.1e-21 Score=159.68 Aligned_cols=293 Identities=11% Similarity=0.149 Sum_probs=214.3
Q ss_pred hhhhhhcccCcEEEEEEcCCCCeEEEEecCCeEEEEeccCC------ceeeeEEe-cCCceeEEEEeeCCcEEEEecCCC
Q 047355 9 IEKEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQ------TTEKSVKV-TDSPVRTAKFVAREHWIVCGSDDK 81 (312)
Q Consensus 9 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~------~~~~~~~~-~~~~v~~~~~~~~~~~l~~g~~dg 81 (312)
++|.+.+|.+.|+++.|+..+++|++|+.|..+++|+++.. +++..... |.+.|.+++|......+++|..++
T Consensus 48 ~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~ 127 (609)
T KOG4227|consen 48 CQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWG 127 (609)
T ss_pred hhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcc
Confidence 45668889999999999999999999999999999998642 33433333 447899999999999999999999
Q ss_pred eEEEEEccCceeeeeec--ccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeE--ecCCccceEEEEeCCCCC
Q 047355 82 FIRVFDYNTMASVKEFE--AHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQT--FEGHSHYVMQSAFNPKDL 157 (312)
Q Consensus 82 ~i~iwd~~~~~~~~~~~--~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~--~~~~~~~v~~~~~~~~~~ 157 (312)
+|.+-|+++.+.+..+. ...+.|+.+..+|..+.+++.+.++.|.+||.+........ ..........+.|+|..+
T Consensus 128 ~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P 207 (609)
T KOG4227|consen 128 TVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETP 207 (609)
T ss_pred eeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCc
Confidence 99999999987776653 23358999999999999999999999999998765433222 222334566788999999
Q ss_pred CEEEEEeCCCeEEEEEcCCCcceeeeccccc-----ceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEecccc-
Q 047355 158 NTFASASLDGTIQIWNMDSSAAKFTLDAHEK-----GINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHT- 231 (312)
Q Consensus 158 ~~~~s~s~dg~v~iwd~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~- 231 (312)
.++++.+..+-+-+||.+..+......+... ...-+...++++|..+.+--.-..-.+||+-+..+......|.
T Consensus 208 ~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~ 287 (609)
T KOG4227|consen 208 ALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNP 287 (609)
T ss_pred eeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCC
Confidence 9999999999999999986543211111111 1111222346666666554333334567776544433333343
Q ss_pred ------cCeEEEEEeCCCcEEEEEeCCCcEEEEeCCCc-----------------------ceeeecccCccceEEEEEe
Q 047355 232 ------NNVTAVCFHPELRIIITASEDGTILIWNATTF-----------------------RLQNTLSSGLERVWSIGYK 282 (312)
Q Consensus 232 ------~~i~~l~~~~~~~~l~s~s~dg~v~iwd~~~~-----------------------~~~~~~~~~~~~v~~~~~~ 282 (312)
..+.+++|-.+.. +++|+.+=.|++|.+..- +....+.+|..-+..|.|+
T Consensus 288 ~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~ 366 (609)
T KOG4227|consen 288 NGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFS 366 (609)
T ss_pred Ccceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeec
Confidence 2577889987755 999999999999987531 1234566777788999999
Q ss_pred cCCCeEEEEecCCeEEEEec
Q 047355 283 KGSNQVAFGCDNGTLIVKIG 302 (312)
Q Consensus 283 ~~~~~l~~~~~~g~i~v~~~ 302 (312)
|-.++|++.+-...+.+|-+
T Consensus 367 ~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 367 QHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred CCcceEeccchhhheecccc
Confidence 99999999998999988854
No 158
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=3e-23 Score=188.34 Aligned_cols=245 Identities=20% Similarity=0.292 Sum_probs=200.1
Q ss_pred cCcEEEEEEcCCCCe----EEEEecCCeEEEEeccCC------ceeeeEEecCCceeEEEEeeCCc-EEEEecCCCeEEE
Q 047355 17 SDRVKSVDFHPTQPW----VLASLYSGTVCIWNYHSQ------TTEKSVKVTDSPVRTAKFVAREH-WIVCGSDDKFIRV 85 (312)
Q Consensus 17 ~~~i~~~~~~~~~~~----l~~~~~dg~v~iw~~~~~------~~~~~~~~~~~~v~~~~~~~~~~-~l~~g~~dg~i~i 85 (312)
+.+.+.++|.+.+.. |+.|.+||.|.+||.... ..+.+...|.++|..+.|++... +|++|++||.|.+
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i 143 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI 143 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence 468999999988776 778899999999997652 23456678999999999998755 9999999999999
Q ss_pred EEccCceeeeee--cccccceeEEEEecCC-CEEEEEeCCCcEEEEeCCCCceeeeEecCCc--cceEEEEeCCCCCCEE
Q 047355 86 FDYNTMASVKEF--EAHEDYIRSLAVHPTF-PFVLTASDDKLIKLWDWEKNWECTQTFEGHS--HYVMQSAFNPKDLNTF 160 (312)
Q Consensus 86 wd~~~~~~~~~~--~~h~~~i~~~~~~~~~-~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~ 160 (312)
||+...+....+ ....+.|.+++|+..- ..|++++.+|.+-|||++.... +..+..+. ..+..+.|+|++...+
T Consensus 144 WDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~p-ii~ls~~~~~~~~S~l~WhP~~aTql 222 (1049)
T KOG0307|consen 144 WDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKP-IIKLSDTPGRMHCSVLAWHPDHATQL 222 (1049)
T ss_pred eccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCc-ccccccCCCccceeeeeeCCCCceee
Confidence 999875543333 2245789999998754 4567899999999999987733 33343333 3466789999998889
Q ss_pred EEEeCCC---eEEEEEcCCC-cceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEecccccCeEE
Q 047355 161 ASASLDG---TIQIWNMDSS-AAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTA 236 (312)
Q Consensus 161 ~s~s~dg---~v~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~i~~ 236 (312)
++++.|. .|.+||+|.. .+.+.+++|+.++.+++|+ ..|..++++++.|+.|.+|+.++++.+..+.....++..
T Consensus 223 ~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc-~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fd 301 (1049)
T KOG0307|consen 223 LVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWC-PQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFD 301 (1049)
T ss_pred eeecCCCCCceeEeecccccCCchhhhcccccceeeeccC-CCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceee
Confidence 8888765 5899999864 4566778999999999985 456789999999999999999999999999888889999
Q ss_pred EEEeCCCc-EEEEEeCCCcEEEEeCCCc
Q 047355 237 VCFHPELR-IIITASEDGTILIWNATTF 263 (312)
Q Consensus 237 l~~~~~~~-~l~s~s~dg~v~iwd~~~~ 263 (312)
+.|.|... .++.++-||.|.|+.+...
T Consensus 302 v~w~pr~P~~~A~asfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 302 VQWCPRNPSVMAAASFDGKISIYSLQGT 329 (1049)
T ss_pred eeecCCCcchhhhheeccceeeeeeecC
Confidence 99999665 8899999999999988653
No 159
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.90 E-value=5.3e-21 Score=165.40 Aligned_cols=293 Identities=21% Similarity=0.300 Sum_probs=207.3
Q ss_pred cchhhhhhhhhcccCcEEEEEEcCCCC---eEEEEecCCeEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEecCC
Q 047355 4 PLELQIEKEFIQKSDRVKSVDFHPTQP---WVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDD 80 (312)
Q Consensus 4 ~~~~~~~~~~~~~~~~i~~~~~~~~~~---~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d 80 (312)
|.+......+.+|..+|+++.|-|+.+ ++++|+.|+.|.+|.+..................+++......+.+.+.|
T Consensus 41 p~k~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~~cv~a~~~~~~~~~ad 120 (764)
T KOG1063|consen 41 PEKILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKECVCVVARSSVMTCKAAD 120 (764)
T ss_pred cccceeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcceeEEEEEeeeeEEEeeccC
Confidence 445545566889999999999999887 89999999999999997443333333222234444444443333334566
Q ss_pred CeEEEEEccC--------------------------------------------------ceeeeeecccccceeEEEEe
Q 047355 81 KFIRVFDYNT--------------------------------------------------MASVKEFEAHEDYIRSLAVH 110 (312)
Q Consensus 81 g~i~iwd~~~--------------------------------------------------~~~~~~~~~h~~~i~~~~~~ 110 (312)
+.+.+||.+. .....++++|++.|.+++|.
T Consensus 121 ~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~ 200 (764)
T KOG1063|consen 121 GTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFA 200 (764)
T ss_pred ceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhh
Confidence 6677776522 12234568999999999997
Q ss_pred cCCC---EEEEEeCCCcEEEEeCCCCc--------------------eeee----------EecCCccceEEEEeCCCCC
Q 047355 111 PTFP---FVLTASDDKLIKLWDWEKNW--------------------ECTQ----------TFEGHSHYVMQSAFNPKDL 157 (312)
Q Consensus 111 ~~~~---~l~t~s~d~~v~iwd~~~~~--------------------~~~~----------~~~~~~~~v~~~~~~~~~~ 157 (312)
..+. +|+++|.|..||+|.+.... .... .+.+|...|.++.|+|..
T Consensus 201 ~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~- 279 (764)
T KOG1063|consen 201 RLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEG- 279 (764)
T ss_pred ccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccch-
Confidence 5443 78899999999999753211 0010 124899999999999964
Q ss_pred CEEEEEeCCCeEEEEEcCCCcceeee------ccc-ccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCC---CeEEEEe
Q 047355 158 NTFASASLDGTIQIWNMDSSAAKFTL------DAH-EKGINCIDYFITSDKVYLITGSDDFTVKVWDYET---KTCVQIL 227 (312)
Q Consensus 158 ~~~~s~s~dg~v~iwd~~~~~~~~~~------~~~-~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~---~~~~~~~ 227 (312)
..++++|.|.++.+|......-+..- .++ ..+.. ....++++..+++-+..|-.++|-.+. ...+..+
T Consensus 280 ~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~--g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~i 357 (764)
T KOG1063|consen 280 LDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFW--GGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVI 357 (764)
T ss_pred hhheecccCcceEEEecCCccceEEEEEEeeccccccccee--eEEEcCCCCEEEEecccCcEEEEeccCccceeecccc
Confidence 67899999999999998766433211 111 12222 334577888899999999999998332 2345567
Q ss_pred cccccCeEEEEEeCCCcEEEEEeCCCcEEEEeCC-C---cceeeecccCccceEEEEEecCCCeEEEEecCCeEEE
Q 047355 228 EGHTNNVTAVCFHPELRIIITASEDGTILIWNAT-T---FRLQNTLSSGLERVWSIGYKKGSNQVAFGCDNGTLIV 299 (312)
Q Consensus 228 ~~h~~~i~~l~~~~~~~~l~s~s~dg~v~iwd~~-~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~v 299 (312)
.||.+.|+.++|+|.|.+|++.|.|.+-|+|--- . +-.+..-+.|...+.|++|-+..-++++|.+...+|+
T Consensus 358 SGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRv 433 (764)
T KOG1063|consen 358 SGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRV 433 (764)
T ss_pred ccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeee
Confidence 8999999999999999999999999999999643 1 1222333456677899999887778888888888775
No 160
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.90 E-value=1e-21 Score=153.78 Aligned_cols=250 Identities=18% Similarity=0.283 Sum_probs=190.1
Q ss_pred hhhhhcccCcEEEEEEcCCCCeEEEEecC--------CeEEEEeccCCcee---------eeEE-ecCCceeEEEEeeCC
Q 047355 10 EKEFIQKSDRVKSVDFHPTQPWVLASLYS--------GTVCIWNYHSQTTE---------KSVK-VTDSPVRTAKFVARE 71 (312)
Q Consensus 10 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--------g~v~iw~~~~~~~~---------~~~~-~~~~~v~~~~~~~~~ 71 (312)
.+.|..+.+.|+.++-+|-.+.+++.... -.+.||.+...... ..+. .+.+.+.++.|.|++
T Consensus 56 skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns 135 (370)
T KOG1007|consen 56 SKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNS 135 (370)
T ss_pred hhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCC
Confidence 46678888999999999977766655433 24679998643211 1111 233578999999999
Q ss_pred cEEEEecCCCeEEEEEccCcee-eeee-----cccccceeEEEEec--CCCEEEEEeCCCcEEEEeCCCCceeeeEecCC
Q 047355 72 HWIVCGSDDKFIRVFDYNTMAS-VKEF-----EAHEDYIRSLAVHP--TFPFVLTASDDKLIKLWDWEKNWECTQTFEGH 143 (312)
Q Consensus 72 ~~l~~g~~dg~i~iwd~~~~~~-~~~~-----~~h~~~i~~~~~~~--~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~ 143 (312)
..|++-. |..|.+|+++.... ..++ ..|....++-+|+| +++.+++.+ |+++..||.++..+....-..|
T Consensus 136 ~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~dAH 213 (370)
T KOG1007|consen 136 DKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIEDAH 213 (370)
T ss_pred CeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcEEEEEccchhhhcchhhhh
Confidence 8888765 78999999987554 3332 23566678888987 567777655 7999999998765555555678
Q ss_pred ccceEEEEeCCCCCCEEEEEeCCCeEEEEEcCC-CcceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCC-
Q 047355 144 SHYVMQSAFNPKDLNTFASASLDGTIQIWNMDS-SAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETK- 221 (312)
Q Consensus 144 ~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~- 221 (312)
...+..+.|+|+....+++|+.||.|++||.+. ..+++.+.+|...+.++.|.+.. ..++++|+.|..|.+|...+-
T Consensus 214 gq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~h-dqLiLs~~SDs~V~Lsca~svS 292 (370)
T KOG1007|consen 214 GQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEH-DQLILSGGSDSAVNLSCASSVS 292 (370)
T ss_pred cceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCcc-ceEEEecCCCceeEEEeccccc
Confidence 889999999998888999999999999999986 45778899999999999986554 467899999999999964211
Q ss_pred ----------------------------eEEEEecccccCeEEEEEeCCCc-EEEEEeCCCcEEEEeCCC
Q 047355 222 ----------------------------TCVQILEGHTNNVTAVCFHPELR-IIITASEDGTILIWNATT 262 (312)
Q Consensus 222 ----------------------------~~~~~~~~h~~~i~~l~~~~~~~-~l~s~s~dg~v~iwd~~~ 262 (312)
..+.++..|.+.|++++|+.-.+ ++|+-|.||++.|=.++.
T Consensus 293 SE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 293 SEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred cccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence 02335677999999999997555 578889999998877654
No 161
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.89 E-value=2.7e-22 Score=167.46 Aligned_cols=221 Identities=22% Similarity=0.312 Sum_probs=184.1
Q ss_pred EEEEEEcCCCCeEEEEecCCeEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEecCCCeEEEEEccCceeeeeecc
Q 047355 20 VKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEA 99 (312)
Q Consensus 20 i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~ 99 (312)
-.|++......++++|+..+.|+|||+......+.+..|...|+.+.|+..+.+|++++..|.|.+..+.++.....+..
T Consensus 82 ~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~ 161 (673)
T KOG4378|consen 82 AFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTI 161 (673)
T ss_pred HHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceec
Confidence 34444445568999999999999999998777888899999999999999999999999999999999998877667755
Q ss_pred c-ccceeEEEEecCCCEE-EEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeCCCeEEEEEcCCC
Q 047355 100 H-EDYIRSLAVHPTFPFV-LTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSS 177 (312)
Q Consensus 100 h-~~~i~~~~~~~~~~~l-~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~ 177 (312)
. .+.|+-+.++|..+++ .+++++|.|.+||+........-.+.|..+...++|+|.+..+|++.+.|..|.+||.+..
T Consensus 162 ~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~ 241 (673)
T KOG4378|consen 162 DSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQ 241 (673)
T ss_pred CCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccc
Confidence 4 4556789999988765 5889999999999876544444456788888899999999899999999999999999876
Q ss_pred cceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCC-CeEEEEecccccCeEEEEEeCCC
Q 047355 178 AAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYET-KTCVQILEGHTNNVTAVCFHPEL 243 (312)
Q Consensus 178 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~-~~~~~~~~~h~~~i~~l~~~~~~ 243 (312)
....++.. ..+...++ +.++|.+|+.|...|.|..||++. ..++.++..|...|++++|-|..
T Consensus 242 ~s~~~l~y-~~Plstva--f~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 242 ASTDRLTY-SHPLSTVA--FSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred cccceeee-cCCcceee--ecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 65554432 34556666 478999999999999999999985 56788899999999999998864
No 162
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=2.4e-20 Score=161.02 Aligned_cols=240 Identities=15% Similarity=0.234 Sum_probs=197.0
Q ss_pred ccCcEEEEEEcCCCCeEEEEecCCeEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEecCCCeEEEEEccCceeee
Q 047355 16 KSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVK 95 (312)
Q Consensus 16 ~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~ 95 (312)
.+..|-+++|. .+.+|++.+.+|+|.-||+.+.+....+....+.|.+++.++.+..++.|++||.+..++........
T Consensus 68 ~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~ 146 (691)
T KOG2048|consen 68 EDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITY 146 (691)
T ss_pred CCCceeeEEEc-cCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEE
Confidence 45699999999 56689999999999999999999988888889999999999999999999999988888877665432
Q ss_pred --eecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeee------Eec-CCccceEEEEeCCCCCCEEEEEeCC
Q 047355 96 --EFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQ------TFE-GHSHYVMQSAFNPKDLNTFASASLD 166 (312)
Q Consensus 96 --~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~------~~~-~~~~~v~~~~~~~~~~~~~~s~s~d 166 (312)
.+...++.|.++.|+|++..+++|+.||.|++||......... .+. +..-.|+++.|-. ...+++|-.-
T Consensus 147 ~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr--d~tI~sgDS~ 224 (691)
T KOG2048|consen 147 KRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLR--DSTIASGDSA 224 (691)
T ss_pred EeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEee--cCcEEEecCC
Confidence 3445568899999999999999999999999999876543320 111 1334567777764 3689999999
Q ss_pred CeEEEEEcCCCcceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeE----EEEecccccCeEEEEEeCC
Q 047355 167 GTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTC----VQILEGHTNNVTAVCFHPE 242 (312)
Q Consensus 167 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~----~~~~~~h~~~i~~l~~~~~ 242 (312)
|+|++||...+...+....|...|.+++. .+++.++++++.|+.|.-|...+.+. ......|...|++++..++
T Consensus 225 G~V~FWd~~~gTLiqS~~~h~adVl~Lav--~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~ 302 (691)
T KOG2048|consen 225 GTVTFWDSIFGTLIQSHSCHDADVLALAV--ADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN 302 (691)
T ss_pred ceEEEEcccCcchhhhhhhhhcceeEEEE--cCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc
Confidence 99999999999999999999999999874 56677899999999999988765532 2233568888999999887
Q ss_pred CcEEEEEeCCCcEEEEeCCC
Q 047355 243 LRIIITASEDGTILIWNATT 262 (312)
Q Consensus 243 ~~~l~s~s~dg~v~iwd~~~ 262 (312)
.+++|+.|.++.+--...
T Consensus 303 --~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 303 --ALISGGRDFTLAICSSRE 320 (691)
T ss_pred --eEEecceeeEEEEccccc
Confidence 899999999998876554
No 163
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.89 E-value=3.4e-19 Score=156.40 Aligned_cols=289 Identities=28% Similarity=0.487 Sum_probs=226.3
Q ss_pred hhhhhcccCcEEEEEEcCCCCeEEEEec-CCeEEEEeccCCceeeeEEecCCceeEEEEeeCCc-EEEEecCCCeEEEEE
Q 047355 10 EKEFIQKSDRVKSVDFHPTQPWVLASLY-SGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREH-WIVCGSDDKFIRVFD 87 (312)
Q Consensus 10 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~g~~dg~i~iwd 87 (312)
...+..|.+.|..++|+|++..+++++. |+.+++|+.........+..|...+..+.|.+++. .+++++.|+.|++||
T Consensus 148 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd 227 (466)
T COG2319 148 IRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWD 227 (466)
T ss_pred EEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEE
Confidence 3456778899999999999998888885 99999999988777788888889999999999887 555559999999999
Q ss_pred ccCceeee-eecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeCC
Q 047355 88 YNTMASVK-EFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLD 166 (312)
Q Consensus 88 ~~~~~~~~-~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d 166 (312)
...+.... .+..|.... ...|+|++.++++++.|+.+++|+..........+..|...+..+.|.| +...+++++.|
T Consensus 228 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~d 305 (466)
T COG2319 228 LSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSP-DGKLLASGSSD 305 (466)
T ss_pred CCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECC-CCCEEEEeeCC
Confidence 88776766 688888775 4488999888889999999999998765442333467788999999998 45677778889
Q ss_pred CeEEEEEcCCCcceeeec--ccccceeEEEEEEcCCceEEEEE-eCCCeEEEEeCCCCeEEEEecccccCeEEEEEeCCC
Q 047355 167 GTIQIWNMDSSAAKFTLD--AHEKGINCIDYFITSDKVYLITG-SDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPEL 243 (312)
Q Consensus 167 g~v~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~sg-~~dg~i~vwd~~~~~~~~~~~~h~~~i~~l~~~~~~ 243 (312)
+.+++||..+........ .|...+..+.+ . +++..++.+ ..|+.+.+|+............+ ..+..+.+.+ .
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~ 381 (466)
T COG2319 306 GTVRLWDLETGKLLSSLTLKGHEGPVSSLSF-S-PDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH-SNVLSVSFSP-D 381 (466)
T ss_pred CcEEEEEcCCCceEEEeeecccCCceEEEEE-C-CCCCEEEEeecCCCcEEeeecCCCceeEEecCC-ceEEEEEECC-C
Confidence 999999988876665554 67776777776 4 443344444 68899999999877633322222 2288999988 5
Q ss_pred cEEEE-EeCCCcEEEEeCCCcceeeecccCccceEEEEEecCCCeEEEEecCCeEEEEeccC
Q 047355 244 RIIIT-ASEDGTILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGCDNGTLIVKIGNS 304 (312)
Q Consensus 244 ~~l~s-~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~v~~~~~ 304 (312)
..+.. +..++.+.+|+................+....+++++..++.++.++.+.++-...
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 382 GRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred CCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 44444 78899999999988776665554447888999999999999999999998876554
No 164
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=6.7e-21 Score=171.75 Aligned_cols=280 Identities=17% Similarity=0.239 Sum_probs=199.6
Q ss_pred CcEEEEEEcCCCCeEEEEecCCeEEEEeccCCceeeeEEecC---CceeEEEEee--CCcEEEEecCCCeEEEEEc----
Q 047355 18 DRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTD---SPVRTAKFVA--REHWIVCGSDDKFIRVFDY---- 88 (312)
Q Consensus 18 ~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~---~~v~~~~~~~--~~~~l~~g~~dg~i~iwd~---- 88 (312)
..-..+-|+|-.+.++++.....|+|||++.++....|..+. ..|..+.+.. |..++++|+.||.|++|+-
T Consensus 1065 ~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~ 1144 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADK 1144 (1387)
T ss_pred CCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccc
Confidence 346778899999999999989999999999998887776543 4678888875 4567999999999999963
Q ss_pred -cCceeeeeecccc-------cceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEE
Q 047355 89 -NTMASVKEFEAHE-------DYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTF 160 (312)
Q Consensus 89 -~~~~~~~~~~~h~-------~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 160 (312)
++.+.+..+.+-+ +.-.-+.|.....+|+++|+-..|+|||..........-.+....+..+.-+-..++.+
T Consensus 1145 ~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i 1224 (1387)
T KOG1517|consen 1145 WKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNII 1224 (1387)
T ss_pred cCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceE
Confidence 2223333322111 11133567666667777777899999998764322222223344555555554557899
Q ss_pred EEEeCCCeEEEEEcCCCcc---eeeecccccc--eeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEE--EEecccc--
Q 047355 161 ASASLDGTIQIWNMDSSAA---KFTLDAHEKG--INCIDYFITSDKVYLITGSDDFTVKVWDYETKTCV--QILEGHT-- 231 (312)
Q Consensus 161 ~s~s~dg~v~iwd~~~~~~---~~~~~~~~~~--v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~--~~~~~h~-- 231 (312)
++|..||.||+||.+...+ +.....|... |..+.+...+.+ -+++|+.||.|++||++..... ..+..|.
T Consensus 1225 ~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~-elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~y 1303 (1387)
T KOG1517|consen 1225 AAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLG-ELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEY 1303 (1387)
T ss_pred EEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCc-ceeeeccCCeEEEEecccCcccccceeeecccc
Confidence 9999999999999986543 3334456655 666665443444 4899999999999999874222 2223333
Q ss_pred -cCeEEEEEeCCCcEEEEEeCCCcEEEEeCCCcceeeecccC-------ccceEEEEEecCCCeEEEEecCCeEEEE
Q 047355 232 -NNVTAVCFHPELRIIITASEDGTILIWNATTFRLQNTLSSG-------LERVWSIGYKKGSNQVAFGCDNGTLIVK 300 (312)
Q Consensus 232 -~~i~~l~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~~g~i~v~ 300 (312)
+..+++..|++.+.+|+|+. +.|.||++.. +.+..+... ...+.|++|+|---+||+|++|.+|-|-
T Consensus 1304 Gs~lTal~VH~hapiiAsGs~-q~ikIy~~~G-~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iY 1378 (1387)
T KOG1517|consen 1304 GSALTALTVHEHAPIIASGSA-QLIKIYSLSG-EQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIY 1378 (1387)
T ss_pred CccceeeeeccCCCeeeecCc-ceEEEEecCh-hhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEe
Confidence 35999999999999999999 9999999863 333333322 3457999999999999999999998764
No 165
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.88 E-value=1.8e-20 Score=152.89 Aligned_cols=279 Identities=19% Similarity=0.248 Sum_probs=201.6
Q ss_pred cCcEEEEEEcCCCC-eEEEEecCCeEEEEeccCCce---------eeeEEecCCceeEEEEeeCCcEEEEecCCCeEEEE
Q 047355 17 SDRVKSVDFHPTQP-WVLASLYSGTVCIWNYHSQTT---------EKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVF 86 (312)
Q Consensus 17 ~~~i~~~~~~~~~~-~l~~~~~dg~v~iw~~~~~~~---------~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iw 86 (312)
..+|.++.|++... .+++|+.|..|++|.+..... ...+..|...|+.+.|+++++.|++|+.+|.|.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 46899999998765 999999999999998754322 22455688899999999999999999999999999
Q ss_pred Ecc--------C--------ceeeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEE
Q 047355 87 DYN--------T--------MASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQS 150 (312)
Q Consensus 87 d~~--------~--------~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~ 150 (312)
-.. + ....+.+.+|.+.|..++|+|++.++++++-|..+++||+... +....+..|.+++..+
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G-~l~~~~~dh~~yvqgv 171 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAG-QLLAILDDHEHYVQGV 171 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccc-eeEeecccccccccee
Confidence 755 2 1234566789999999999999999999999999999999876 5667788999999999
Q ss_pred EeCCCCCCEEEEEeCCCeEEEEEcCCCcceeeec--------c-cc-cceeEE-----------EEEEcCCceEEEEEeC
Q 047355 151 AFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLD--------A-HE-KGINCI-----------DYFITSDKVYLITGSD 209 (312)
Q Consensus 151 ~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~--------~-~~-~~v~~~-----------~~~~~~~~~~l~sg~~ 209 (312)
+|.|.+ +++++-+.|...+.+.+...+...... . +. ..+..+ ...++|+|.++++.+.
T Consensus 172 awDpl~-qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag 250 (434)
T KOG1009|consen 172 AWDPLN-QYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAG 250 (434)
T ss_pred ecchhh-hhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccc
Confidence 999964 788998999877777765443322211 0 10 011110 1235688887776532
Q ss_pred ----CC-----eEEEEeCC-CCeEEEEecccccCeEEEEEeCC------------------CcEEEEEeCCCcEEEEeCC
Q 047355 210 ----DF-----TVKVWDYE-TKTCVQILEGHTNNVTAVCFHPE------------------LRIIITASEDGTILIWNAT 261 (312)
Q Consensus 210 ----dg-----~i~vwd~~-~~~~~~~~~~h~~~i~~l~~~~~------------------~~~l~s~s~dg~v~iwd~~ 261 (312)
.+ ..++|+-. ..++...+.+...+...+.|+|- +-.+|.++ ...|++||.+
T Consensus 251 ~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq 329 (434)
T KOG1009|consen 251 LFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQ 329 (434)
T ss_pred eeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEee-cceEEEeccc
Confidence 12 23344322 12334445555556666666542 11234444 5689999998
Q ss_pred Ccceeeecc-cCccceEEEEEecCCCeEEEEecCCeEE
Q 047355 262 TFRLQNTLS-SGLERVWSIGYKKGSNQVAFGCDNGTLI 298 (312)
Q Consensus 262 ~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~g~i~ 298 (312)
+.+...... .|...+..++|++||+.|+..+.||-+-
T Consensus 330 ~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS 367 (434)
T KOG1009|consen 330 TLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCS 367 (434)
T ss_pred cccceEEEeeeeeeeecceeecCCCcEEEEeccCCceE
Confidence 876655444 3668899999999999999999999754
No 166
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.88 E-value=8.8e-22 Score=152.23 Aligned_cols=280 Identities=14% Similarity=0.190 Sum_probs=193.9
Q ss_pred hhhcccCcEEEEEEcCCCCeEEEEecCCeEEEEeccCCceeeeEE-ecCCceeEEEEeeCCcEEEEecCCCeEEEEEccC
Q 047355 12 EFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVK-VTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNT 90 (312)
Q Consensus 12 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~ 90 (312)
.+.+|...|+++.|..++. |++|..-|.|.+|.+++.+....++ .+...|+.+.-.++ ..+.+-+.|..+.+|++..
T Consensus 9 vLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~ 86 (323)
T KOG0322|consen 9 VLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAY 86 (323)
T ss_pred Eeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccC
Confidence 3448889999999987664 9999999999999999988887787 55667878877776 5688889999999999876
Q ss_pred ceeeeeecccccceeEEEEecCCCEEEEEeCCC-cEEEE-----------eCCCCceeeeE----ecCCccceEEEEeCC
Q 047355 91 MASVKEFEAHEDYIRSLAVHPTFPFVLTASDDK-LIKLW-----------DWEKNWECTQT----FEGHSHYVMQSAFNP 154 (312)
Q Consensus 91 ~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~-~v~iw-----------d~~~~~~~~~~----~~~~~~~v~~~~~~~ 154 (312)
...+ ..|.-.++++.|.+.. +...+... ....+ |.....+ +.. -.+....+++..+..
T Consensus 87 s~~i---~i~Si~~nslgFCrfS--l~~~~k~~eqll~yp~rgsde~h~~D~g~~tq-v~i~dd~~~~Klgsvmc~~~~~ 160 (323)
T KOG0322|consen 87 SAFI---SIHSIVVNSLGFCRFS--LVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQ-VQIADDSERSKLGSVMCQDKDH 160 (323)
T ss_pred cceE---EEeeeeccccccccce--eccCCCcchhheecCCcccchhhhhccCccce-eEccCchhccccCceeeeeccc
Confidence 4332 2233344444443321 11111111 11111 1111000 000 011223344444322
Q ss_pred CC--CCEEEEEeCCCeEEEEEcCCCccee----------eecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCC--
Q 047355 155 KD--LNTFASASLDGTIQIWNMDSSAAKF----------TLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYET-- 220 (312)
Q Consensus 155 ~~--~~~~~s~s~dg~v~iwd~~~~~~~~----------~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~-- 220 (312)
.. .-++++|-++|.+.+||+.++.... ....|..++.++++...-+.. ++|+.+-.+..|++.-
T Consensus 161 ~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rG--isgga~dkl~~~Sl~~s~ 238 (323)
T KOG0322|consen 161 ACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRG--ISGGADDKLVMYSLNHST 238 (323)
T ss_pred cccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCC--cCCCccccceeeeecccc
Confidence 22 2356778889999999998863332 234578889998876444332 5677788889998742
Q ss_pred Ce--EEEEecccccCeEEEEEeCCCcEEEEEeCCCcEEEEeCCCcceeeecccCccceEEEEEecCCCeEEEEecCCeEE
Q 047355 221 KT--CVQILEGHTNNVTAVCFHPELRIIITASEDGTILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGCDNGTLI 298 (312)
Q Consensus 221 ~~--~~~~~~~h~~~i~~l~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~ 298 (312)
+. ....+...+-.|..+..-||++.+||++.|++||+|..++.+.+..++.|...|++++|+|+-+.+|+++.|++|-
T Consensus 239 gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rIS 318 (323)
T KOG0322|consen 239 GSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARIS 318 (323)
T ss_pred CcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEE
Confidence 22 1222222344588999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEe
Q 047355 299 VKI 301 (312)
Q Consensus 299 v~~ 301 (312)
+|=
T Consensus 319 LWk 321 (323)
T KOG0322|consen 319 LWK 321 (323)
T ss_pred eee
Confidence 883
No 167
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.88 E-value=2.4e-21 Score=160.23 Aligned_cols=215 Identities=22% Similarity=0.309 Sum_probs=167.1
Q ss_pred EEccCceeeeeecccccceeEEEEecCCC--EEEEEeCCCcEEEEeCC---CCceeeeEecCCccceEEEEeCCCCCCEE
Q 047355 86 FDYNTMASVKEFEAHEDYIRSLAVHPTFP--FVLTASDDKLIKLWDWE---KNWECTQTFEGHSHYVMQSAFNPKDLNTF 160 (312)
Q Consensus 86 wd~~~~~~~~~~~~h~~~i~~~~~~~~~~--~l~t~s~d~~v~iwd~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 160 (312)
+|+.+.....+.+-+...|++++|||..+ ++++|..-|.|-+||+. ....-...+..|..+|..+.|+|.+...+
T Consensus 171 l~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i 250 (498)
T KOG4328|consen 171 LDLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQI 250 (498)
T ss_pred cccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhhe
Confidence 44555556667788899999999999865 78889999999999994 23334567889999999999999999999
Q ss_pred EEEeCCCeEEEEEcCCCcceeeecc--cccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeE-EEEecccccCeEEE
Q 047355 161 ASASLDGTIQIWNMDSSAAKFTLDA--HEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTC-VQILEGHTNNVTAV 237 (312)
Q Consensus 161 ~s~s~dg~v~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~-~~~~~~h~~~i~~l 237 (312)
++.|.||+|+.-|+........+.. .......++ ++.+...++.|..=|...+||.++... +..+..|...|+++
T Consensus 251 ~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d--~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv 328 (498)
T KOG4328|consen 251 YSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLD--FSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSV 328 (498)
T ss_pred eeeccCceeeeeeecchhhHHHhhcCccceeeeecc--ccCCCccEEEeecccceEEEEeecCCccchhhhhhhccccee
Confidence 9999999999999987654333222 223334444 334444556666666999999987654 66777899999999
Q ss_pred EEeCCC-cEEEEEeCCCcEEEEeCCCcceee----ecccCccceEEEEEecCCCeEEEEecCCeEEEEec
Q 047355 238 CFHPEL-RIIITASEDGTILIWNATTFRLQN----TLSSGLERVWSIGYKKGSNQVAFGCDNGTLIVKIG 302 (312)
Q Consensus 238 ~~~~~~-~~l~s~s~dg~v~iwd~~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~v~~~ 302 (312)
+++|.. .+|||+|.|++++|||++...... ..-.|...|.+.-|||.+-.|++.+.|..|+|+=.
T Consensus 329 ~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~ds 398 (498)
T KOG4328|consen 329 ALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDS 398 (498)
T ss_pred ecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeec
Confidence 999954 578999999999999998644332 23356677999999999888999999999998744
No 168
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.88 E-value=4.3e-21 Score=155.24 Aligned_cols=201 Identities=18% Similarity=0.323 Sum_probs=163.1
Q ss_pred ccccceeEEEEecCC--CEEEEEeCCCcEEEEeCCCC---------------ceeeeEecCCccceEEEEeCCCCCCEEE
Q 047355 99 AHEDYIRSLAVHPTF--PFVLTASDDKLIKLWDWEKN---------------WECTQTFEGHSHYVMQSAFNPKDLNTFA 161 (312)
Q Consensus 99 ~h~~~i~~~~~~~~~--~~l~t~s~d~~v~iwd~~~~---------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 161 (312)
.|.+.++-+...+-+ .+.++=+..|.|+|||+... ..++.++.+|...-..+.|+|.....++
T Consensus 149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll 228 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL 228 (440)
T ss_pred ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc
Confidence 566677777766654 45566688999999997431 2345677888888889999997777889
Q ss_pred EEeCCCeEEEEEcCCCcce---eeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCC---eEEEEecccccCeE
Q 047355 162 SASLDGTIQIWNMDSSAAK---FTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETK---TCVQILEGHTNNVT 235 (312)
Q Consensus 162 s~s~dg~v~iwd~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~---~~~~~~~~h~~~i~ 235 (312)
+|-.-+.|++|...++.-. ..+.+|+..|.-+.|.++.++ .|++||.||.|++||++.+ .++.+ +.|.+.|+
T Consensus 229 sGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~-vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDVN 306 (440)
T KOG0302|consen 229 SGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDG-VFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDVN 306 (440)
T ss_pred cCccccceEeeeeccCceeecCccccccccchhhhccCCccCc-eEEeeecCceEEEEEecCCCccceeEe-eccCCcee
Confidence 9888889999998875422 345679999999998776654 6899999999999999987 34444 78999999
Q ss_pred EEEEeCCCcEEEEEeCCCcEEEEeCCCc---ceeeecccCccceEEEEEecC-CCeEEEEecCCeEEEEe
Q 047355 236 AVCFHPELRIIITASEDGTILIWNATTF---RLQNTLSSGLERVWSIGYKKG-SNQVAFGCDNGTLIVKI 301 (312)
Q Consensus 236 ~l~~~~~~~~l~s~s~dg~v~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~g~i~v~~ 301 (312)
.|.|+.+-.+||+|+.||+++|||++.+ +.+.+++.|...+.++.|+|. ...|++++.|.+|-+|=
T Consensus 307 VISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWD 376 (440)
T KOG0302|consen 307 VISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWD 376 (440)
T ss_pred eEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEE
Confidence 9999998889999999999999999875 456788899999999999984 67788888999988874
No 169
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=1.1e-20 Score=151.10 Aligned_cols=270 Identities=18% Similarity=0.234 Sum_probs=196.4
Q ss_pred CeEEEEecCCeEEEEeccCCceeeeEEecCCceeEEEEee--CCcEEEEecCCCeEEEEEccCceee--eeecccc-cce
Q 047355 30 PWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVA--REHWIVCGSDDKFIRVFDYNTMASV--KEFEAHE-DYI 104 (312)
Q Consensus 30 ~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~--~~~~~h~-~~i 104 (312)
..+|++...|+|++||..++.....+..+.+.+..+.|.. ..+.+++|+.||+|++||+++.... ..+.+|. .+-
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 5689999999999999999888889999988899999987 5678999999999999999876533 3345555 456
Q ss_pred eEEEEecCCCEEEEEe----CCCcEEEEeCCCCcee-eeEecCCccceEEEEeCCCCCCEEEEEeCCCeEEEEEcCCCcc
Q 047355 105 RSLAVHPTFPFVLTAS----DDKLIKLWDWEKNWEC-TQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAA 179 (312)
Q Consensus 105 ~~~~~~~~~~~l~t~s----~d~~v~iwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~ 179 (312)
.+++.+-.+..++.|. .+-.|.+||++...+. ..-.+.|...|.++.|+|.++++|++||.||.|.+||++....
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E 200 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE 200 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence 6777665667777764 4678999999876553 3346789999999999999999999999999999999976432
Q ss_pred ---eeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEeccc------------ccCeEEEEEeC-CC
Q 047355 180 ---KFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGH------------TNNVTAVCFHP-EL 243 (312)
Q Consensus 180 ---~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h------------~~~i~~l~~~~-~~ 243 (312)
+...-.|...|.++.|. ++.-..|.+-+..+...+|+++.+.....+... ...+-. +.+| +.
T Consensus 201 eDaL~~viN~~sSI~~igw~-~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~-~~~~~~~ 278 (376)
T KOG1188|consen 201 EDALLHVINHGSSIHLIGWL-SKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVIN-EHSPGDK 278 (376)
T ss_pred hhhHHHhhcccceeeeeeee-cCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheee-cccCCCc
Confidence 22233455667888764 333234677778889999999877644333211 011111 1223 44
Q ss_pred cEEEEEeC-CCcEEEEeC---CCc---ceeeeccc-CccceEEEEEecCCCeEEEEecCCeEEEEe
Q 047355 244 RIIITASE-DGTILIWNA---TTF---RLQNTLSS-GLERVWSIGYKKGSNQVAFGCDNGTLIVKI 301 (312)
Q Consensus 244 ~~l~s~s~-dg~v~iwd~---~~~---~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~g~i~v~~ 301 (312)
..++.++. -+...++-+ .++ +.+..+.+ |.+-|.++.|...+..+-+|++||.+.+|-
T Consensus 279 ~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk 344 (376)
T KOG1188|consen 279 DTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWK 344 (376)
T ss_pred ceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEe
Confidence 45555554 555555533 333 33444555 556689999999999999999999999998
No 170
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.87 E-value=1.1e-19 Score=160.42 Aligned_cols=261 Identities=16% Similarity=0.202 Sum_probs=187.3
Q ss_pred CeEEEEeccCCceeeeEEecCCceeEEEEeeC-CcEEEEecCCCeEEEEEccCcee--ee----eecccccceeEEEEec
Q 047355 39 GTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAR-EHWIVCGSDDKFIRVFDYNTMAS--VK----EFEAHEDYIRSLAVHP 111 (312)
Q Consensus 39 g~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~g~~dg~i~iwd~~~~~~--~~----~~~~h~~~i~~~~~~~ 111 (312)
+.+.+|++.........-....+|.++.|++. ...++.|+.+|+|.+||+..... .. ....|..++..+.|..
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~ 301 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ 301 (555)
T ss_pred ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec
Confidence 47899999766444444455678999999985 56777888999999999976543 22 2246889999999976
Q ss_pred CCCE--EEEEeCCCcEEEEeCCCCceeeeE-----ec------CCccceEEEEeCCCCCCEEEEEeCCCeEEEEEcCCC-
Q 047355 112 TFPF--VLTASDDKLIKLWDWEKNWECTQT-----FE------GHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSS- 177 (312)
Q Consensus 112 ~~~~--l~t~s~d~~v~iwd~~~~~~~~~~-----~~------~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~- 177 (312)
+..- +++++.||.|..|+++.-..+... .. .....+..+.|.+.+.+.|+.|+.+|.|.--+-...
T Consensus 302 ~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~ 381 (555)
T KOG1587|consen 302 NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYT 381 (555)
T ss_pred cCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCc
Confidence 5444 899999999999987543221111 11 223457788999999999999999999877433222
Q ss_pred --c-----ceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCC-CCeEEEEecccccCeEEEEEeCCC-cEEEE
Q 047355 178 --A-----AKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYE-TKTCVQILEGHTNNVTAVCFHPEL-RIIIT 248 (312)
Q Consensus 178 --~-----~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~-~~~~~~~~~~h~~~i~~l~~~~~~-~~l~s 248 (312)
. .......|..+++++.+.+-.. ..+.+++ |.+|++|... ...++..+..+...|++++|||.. ..+++
T Consensus 382 ~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~-k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~ 459 (555)
T KOG1587|consen 382 PAPEVSYKGHSTFITHIGPVYAVSRNPFYP-KNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFAT 459 (555)
T ss_pred ccccccccccccccccCcceEeeecCCCcc-ceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEE
Confidence 1 1224556778888887543333 3344444 9999999987 666777777788889999999965 46778
Q ss_pred EeCCCcEEEEeCCCc--ceeeecccCccceEEEEEecCCCeEEEEecCCeEEEEe
Q 047355 249 ASEDGTILIWNATTF--RLQNTLSSGLERVWSIGYKKGSNQVAFGCDNGTLIVKI 301 (312)
Q Consensus 249 ~s~dg~v~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~v~~ 301 (312)
+..||.|.+||+... +...+..-.......+.|++.|+.|+.|...|++.+.-
T Consensus 460 ~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~ 514 (555)
T KOG1587|consen 460 VDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILK 514 (555)
T ss_pred EcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEE
Confidence 888999999998643 33333333345667788889999999999999876543
No 171
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.87 E-value=8.8e-20 Score=157.62 Aligned_cols=270 Identities=15% Similarity=0.232 Sum_probs=206.9
Q ss_pred cEEEEEEcCCCCeEEEEecCCeEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEecCCCeEEEEEccCceeeeeec
Q 047355 19 RVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFE 98 (312)
Q Consensus 19 ~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~ 98 (312)
.|+.++|-|||..|+.++ +..+.+||...+...+.+..|...|.+++|+.+|+.+++|+.|..|.+|+.+-...+ ++
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L-kY- 90 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL-KY- 90 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccccccee-ee-
Confidence 799999999999887664 467899999999999999999999999999999999999999999999985432222 22
Q ss_pred ccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeCCCeEEEEEcCCCc
Q 047355 99 AHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSA 178 (312)
Q Consensus 99 ~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~ 178 (312)
.|.+.|.||.|+|-...+++++-. ..-+|..... .+... .....+.+.+|.. ++++|+-|-.||+|.+=+-...+
T Consensus 91 SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK--~V~K~-kss~R~~~CsWtn-DGqylalG~~nGTIsiRNk~gEe 165 (1081)
T KOG1538|consen 91 SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQK--SVSKH-KSSSRIICCSWTN-DGQYLALGMFNGTISIRNKNGEE 165 (1081)
T ss_pred ccCCeeeEeecCchHHHhhhcchh-hccccChhhh--hHHhh-hhheeEEEeeecC-CCcEEEEeccCceEEeecCCCCc
Confidence 689999999999999999998863 4667875432 11111 1234567788875 67999999999999998654433
Q ss_pred ceeee--cccccceeEEEEEEcCC---ceEEEEEeCCCeEEEEeCCCCeEEEEecccccCeEEEEEeCCCcEEEEEeCCC
Q 047355 179 AKFTL--DAHEKGINCIDYFITSD---KVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITASEDG 253 (312)
Q Consensus 179 ~~~~~--~~~~~~v~~~~~~~~~~---~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~s~dg 253 (312)
..... .+...++..++|.++.. ...++......++.+|.+. ++.+..-+.-.-.-.|+.+-++|.++..|+.|+
T Consensus 166 k~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk 244 (1081)
T KOG1538|consen 166 KVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGGSDK 244 (1081)
T ss_pred ceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEEccCCC
Confidence 32221 23567788888754432 2346666666777777663 444432233344567999999999999999999
Q ss_pred cEEEEeCCCcceeeecccCccceEEEEEecCCCeEEEEecCCeEE
Q 047355 254 TILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGCDNGTLI 298 (312)
Q Consensus 254 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~ 298 (312)
.+.+|. +.+-.+.++.....-+|+|+..|+++..+.|+-||+|.
T Consensus 245 ~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiA 288 (1081)
T KOG1538|consen 245 QLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIA 288 (1081)
T ss_pred ceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEccCeee
Confidence 999996 56777778877788899999999999999999999986
No 172
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=5.9e-19 Score=135.29 Aligned_cols=269 Identities=16% Similarity=0.291 Sum_probs=191.8
Q ss_pred ccCcEEEEEEcCCCCeEEEEecCCeEEEEeccCC----------ceeeeEEecCCceeEEEEeeCCcEEEEecCCCeEEE
Q 047355 16 KSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQ----------TTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRV 85 (312)
Q Consensus 16 ~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~i 85 (312)
....|.+-+++|.+++|++|..+|.|.++.+.+. ..+..++.|++++..++|. ..+|++|+. |.|+-
T Consensus 9 ~~~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~gd-G~V~g 85 (325)
T KOG0649|consen 9 AYNTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGGD-GLVYG 85 (325)
T ss_pred HHHHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeeccC-ceEEE
Confidence 3356778899999999999999999999987431 2233457899999999999 456777654 99999
Q ss_pred EEccCceee---ee-----ecccc-----cceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEe
Q 047355 86 FDYNTMASV---KE-----FEAHE-----DYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAF 152 (312)
Q Consensus 86 wd~~~~~~~---~~-----~~~h~-----~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~ 152 (312)
|........ +. ...|. ..|++|-..|..+-+++++.|+.+.-||++++ ...+.+.+|+.++-++.-
T Consensus 86 w~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G-~i~r~~rGHtDYvH~vv~ 164 (325)
T KOG0649|consen 86 WEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDG-RIQREYRGHTDYVHSVVG 164 (325)
T ss_pred eeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCC-EEEEEEcCCcceeeeeee
Confidence 976543220 10 11122 35899999998887888889999999999876 667789999999988876
Q ss_pred CCCCCCEEEEEeCCCeEEEEEcCCCcceeeecccc----------cceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCe
Q 047355 153 NPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHE----------KGINCIDYFITSDKVYLITGSDDFTVKVWDYETKT 222 (312)
Q Consensus 153 ~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~~~----------~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~ 222 (312)
.. ....+++|++||++|+||.++.+....+..-. ..+.+++ .+..+++.|+ -..+.+|.+++.+
T Consensus 165 R~-~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala----~~edWlvCGg-Gp~lslwhLrsse 238 (325)
T KOG0649|consen 165 RN-ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALA----VNEDWLVCGG-GPKLSLWHLRSSE 238 (325)
T ss_pred cc-cCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEe----ccCceEEecC-CCceeEEeccCCC
Confidence 43 34679999999999999999998877664321 2344444 3456777665 4479999999988
Q ss_pred EEEEecccccCeEEEEEeCCCcEEEEEeCCCcEEEEeCCCcceeeecccCccceEEEEEecCC-CeEEEEecCCeEE
Q 047355 223 CVQILEGHTNNVTAVCFHPELRIIITASEDGTILIWNATTFRLQNTLSSGLERVWSIGYKKGS-NQVAFGCDNGTLI 298 (312)
Q Consensus 223 ~~~~~~~h~~~i~~l~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~g~i~ 298 (312)
+...+. -...+..+.|-.+ .++.++..+.|.-|.+. +.+............+..|+... +.|..++...++.
T Consensus 239 ~t~vfp-ipa~v~~v~F~~d--~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~ 311 (325)
T KOG0649|consen 239 STCVFP-IPARVHLVDFVDD--CVLIGGEGNHVQSYTLN-GVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLH 311 (325)
T ss_pred ceEEEe-cccceeEeeeecc--eEEEeccccceeeeeec-cEEEEeccCCccceeeecccCCceEEEEecccceeee
Confidence 887776 4567888888664 58888888899999885 34443333333344455555433 4444444455544
No 173
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.86 E-value=1.2e-19 Score=142.22 Aligned_cols=261 Identities=21% Similarity=0.294 Sum_probs=186.0
Q ss_pred cCCeEEEEeccCCc---eeeeEEecCCceeEEEEeeCCcEE-EEecCC-------CeEEEEEccCc---------eeeee
Q 047355 37 YSGTVCIWNYHSQT---TEKSVKVTDSPVRTAKFVAREHWI-VCGSDD-------KFIRVFDYNTM---------ASVKE 96 (312)
Q Consensus 37 ~dg~v~iw~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l-~~g~~d-------g~i~iwd~~~~---------~~~~~ 96 (312)
.|..|.+.+++... ..+.|..+.+.|..++-+|....| +++.++ -.+.+|.+... +++..
T Consensus 38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~ 117 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVAS 117 (370)
T ss_pred CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhc
Confidence 45667777665432 224566677788888888755544 444332 24678987532 22223
Q ss_pred ec-ccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEe-----cCCccceEEEEeCCC-CCCEEEEEeCCCeE
Q 047355 97 FE-AHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTF-----EGHSHYVMQSAFNPK-DLNTFASASLDGTI 169 (312)
Q Consensus 97 ~~-~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~-----~~~~~~v~~~~~~~~-~~~~~~s~s~dg~v 169 (312)
+. .+-+.|.|+.|.|++..+++-. |..|.+|++.........+ .++.....+-.|+|. +++.++ ...|+++
T Consensus 118 Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~-tt~d~tl 195 (370)
T KOG1007|consen 118 LDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVA-TTSDSTL 195 (370)
T ss_pred CCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEE-EeCCCcE
Confidence 32 3446899999999988887665 8899999987553322211 234566777889984 444454 4569999
Q ss_pred EEEEcCCCcceeee-cccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCC-CeEEEEecccccCeEEEEEeC-CCcEE
Q 047355 170 QIWNMDSSAAKFTL-DAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYET-KTCVQILEGHTNNVTAVCFHP-ELRII 246 (312)
Q Consensus 170 ~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~-~~~~~~~~~h~~~i~~l~~~~-~~~~l 246 (312)
+.||+++......+ .+|...+..++|-+ ....+|++|++||.|++||.+. ..+++.+.+|.-.|+++.|+| ..+++
T Consensus 196 ~~~D~RT~~~~~sI~dAHgq~vrdlDfNp-nkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLi 274 (370)
T KOG1007|consen 196 QFWDLRTMKKNNSIEDAHGQRVRDLDFNP-NKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLI 274 (370)
T ss_pred EEEEccchhhhcchhhhhcceeeeccCCC-CceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEE
Confidence 99999988776655 57878888888633 2356799999999999999985 567889999999999999999 45788
Q ss_pred EEEeCCCcEEEEeCCCc----------------------c-------eeeecccCccceEEEEEec-CCCeEEEEecCCe
Q 047355 247 ITASEDGTILIWNATTF----------------------R-------LQNTLSSGLERVWSIGYKK-GSNQVAFGCDNGT 296 (312)
Q Consensus 247 ~s~s~dg~v~iwd~~~~----------------------~-------~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~g~ 296 (312)
++||+|..|.+|....- + .+.++..|...|++++|+. |.=.+|+-+=||+
T Consensus 275 Ls~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGR 354 (370)
T KOG1007|consen 275 LSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGR 354 (370)
T ss_pred EecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCce
Confidence 99999999999975321 0 1224556677899999985 6667888888999
Q ss_pred EEEE
Q 047355 297 LIVK 300 (312)
Q Consensus 297 i~v~ 300 (312)
++|-
T Consensus 355 viIs 358 (370)
T KOG1007|consen 355 VIIS 358 (370)
T ss_pred EEee
Confidence 8764
No 174
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=1.9e-19 Score=149.27 Aligned_cols=233 Identities=15% Similarity=0.225 Sum_probs=179.7
Q ss_pred CCceeEEEEeeCCcEEEEecCCCeEEEEEccCce--eeeeecccccceeEEEEecCCC-EEEEEeCCCcEEEEeCCCCce
Q 047355 59 DSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMA--SVKEFEAHEDYIRSLAVHPTFP-FVLTASDDKLIKLWDWEKNWE 135 (312)
Q Consensus 59 ~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~--~~~~~~~h~~~i~~~~~~~~~~-~l~t~s~d~~v~iwd~~~~~~ 135 (312)
.++|+++.|+|....+++|+.|+.+++|.++... .++.+.--..+|.+.+|.|+|. .+++++.......||+.....
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 4689999999999999999999999999887543 4444444567899999999998 888999999999999875422
Q ss_pred e-eeEecCCc-cceEEEEeCCCCCCEEEEEeCCCeEEEEEcCCCcceeeecccccceeEEEEEEcCCceEEEEEeCCCeE
Q 047355 136 C-TQTFEGHS-HYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTV 213 (312)
Q Consensus 136 ~-~~~~~~~~-~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i 213 (312)
. +....++. ..+-....+| +.++++..+..|.|.+....+++.+.++.- .+.+..+. ++.++..|++.+.+|.|
T Consensus 293 ~k~~~~~g~e~~~~e~FeVSh-d~~fia~~G~~G~I~lLhakT~eli~s~Ki-eG~v~~~~--fsSdsk~l~~~~~~GeV 368 (514)
T KOG2055|consen 293 TKLKPPYGVEEKSMERFEVSH-DSNFIAIAGNNGHIHLLHAKTKELITSFKI-EGVVSDFT--FSSDSKELLASGGTGEV 368 (514)
T ss_pred ccccCCCCcccchhheeEecC-CCCeEEEcccCceEEeehhhhhhhhheeee-ccEEeeEE--EecCCcEEEEEcCCceE
Confidence 1 12223333 2334455566 457999999999999999988877655532 23455554 45788889999999999
Q ss_pred EEEeCCCCeEEEEeccccc-CeEEEEEeCCCcEEEEEeCCCcEEEEeCCC------cceeeecccCccceEEEEEecCCC
Q 047355 214 KVWDYETKTCVQILEGHTN-NVTAVCFHPELRIIITASEDGTILIWNATT------FRLQNTLSSGLERVWSIGYKKGSN 286 (312)
Q Consensus 214 ~vwd~~~~~~~~~~~~h~~-~i~~l~~~~~~~~l~s~s~dg~v~iwd~~~------~~~~~~~~~~~~~v~~~~~~~~~~ 286 (312)
.+||+++..+++.+....+ .=++++.++++.+||+||..|.|.|||..+ .+++.++..-...|.++.|++|.+
T Consensus 369 ~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~q 448 (514)
T KOG2055|consen 369 YVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQ 448 (514)
T ss_pred EEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchh
Confidence 9999999998888764322 235778889999999999999999999654 245555555567899999999999
Q ss_pred eEEEEecCC
Q 047355 287 QVAFGCDNG 295 (312)
Q Consensus 287 ~l~~~~~~g 295 (312)
.||.+|...
T Consensus 449 iLAiaS~~~ 457 (514)
T KOG2055|consen 449 ILAIASRVK 457 (514)
T ss_pred hhhhhhhcc
Confidence 999888743
No 175
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.85 E-value=2e-19 Score=151.86 Aligned_cols=274 Identities=20% Similarity=0.307 Sum_probs=192.2
Q ss_pred cchhhhhhhhhcccCcEEEEEEcCCCCeEEEEecCCeEEEEeccCCceeeeEEecCCceeEEEEe--------eCCcEEE
Q 047355 4 PLELQIEKEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFV--------AREHWIV 75 (312)
Q Consensus 4 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~--------~~~~~l~ 75 (312)
+++.+.-+.- .+...+.++.|......+.++ .|..+.+|.-............+.-+....+. ...+.++
T Consensus 2 klk~~~~~k~-r~~e~vc~v~w~~~eei~~~~-dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~ 79 (737)
T KOG1524|consen 2 KLKTRICKKN-RNSEKVCCVDWSSNEEIYFVS-DDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLL 79 (737)
T ss_pred ccchhhhhcc-ccceeEEeecccccceEEEec-cCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEE
Confidence 3444444433 666778899998777666555 45555555432222222333333223222221 1234678
Q ss_pred EecCCCeEEEEEccCceeeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCC
Q 047355 76 CGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPK 155 (312)
Q Consensus 76 ~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 155 (312)
.+++||.+.+.+- .++..+.+..|.+.|.+-.|+|+|.-|+|++.||.|++|.... ....++......|.+++|.|.
T Consensus 80 i~s~DGkf~il~k-~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsG--MLRStl~Q~~~~v~c~~W~p~ 156 (737)
T KOG1524|consen 80 ICSNDGRFVILNK-SARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSG--MLRSTVVQNEESIRCARWAPN 156 (737)
T ss_pred EEcCCceEEEecc-cchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccc--hHHHHHhhcCceeEEEEECCC
Confidence 8889999888763 3455667889999999999999999999999999999998432 122233445568899999997
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCcceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEecccccCeE
Q 047355 156 DLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVT 235 (312)
Q Consensus 156 ~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~i~ 235 (312)
..+.+.+. .+.+.|=-+..+..+..-.+|.+-+-+++| ++...++++|++|...++||.. +..+..-..|.-+|+
T Consensus 157 S~~vl~c~--g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W--~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~IT 231 (737)
T KOG1524|consen 157 SNSIVFCQ--GGHISIKPLAANSKIIRWRAHDGLVLSLSW--STQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAIT 231 (737)
T ss_pred CCceEEec--CCeEEEeecccccceeEEeccCcEEEEeec--CccccceeecCCceeEEeeccc-CcccccCChhcccee
Confidence 65555543 355666666666666777899999999987 4556789999999999999975 666777778999999
Q ss_pred EEEEeCCCcEEEEEeCCCcEEEEeCCCcceeeecccCccceEEEEEecCCCeEEEEecCCeEEEE
Q 047355 236 AVCFHPELRIIITASEDGTILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGCDNGTLIVK 300 (312)
Q Consensus 236 ~l~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~v~ 300 (312)
+++|+|+ +.++.+|. .++| +. ....+.++.++||+||.+++.|+..|.+.+.
T Consensus 232 Sva~npd-~~~~v~S~-nt~R--------~~---~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 232 SVAFNPE-KDYLLWSY-NTAR--------FS---SPRVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred eeeeccc-cceeeeee-eeee--------ec---CCCccceEEEEEcCCCceeeccccCceEEEe
Confidence 9999999 66666663 2444 11 1224678999999999999999999998764
No 176
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=7.8e-20 Score=152.49 Aligned_cols=296 Identities=20% Similarity=0.277 Sum_probs=226.1
Q ss_pred hhhhhhhhhcccCcEEEEEEcCCCCeEEEEecCCeEEEEeccCCceeeeEE-ecCCceeEEEEeeC--CcEEEEecCCCe
Q 047355 6 ELQIEKEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVK-VTDSPVRTAKFVAR--EHWIVCGSDDKF 82 (312)
Q Consensus 6 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~-~~~~~v~~~~~~~~--~~~l~~g~~dg~ 82 (312)
++.+...+..|.+.|+.|.|+..|..|++|+.|..|.+||+........+. +|...|...+|.|. ..-|++.+.||.
T Consensus 131 r~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgq 210 (559)
T KOG1334|consen 131 RLRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQ 210 (559)
T ss_pred HhhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCc
Confidence 345667788999999999999999999999999999999998877665554 45667777788874 567899999999
Q ss_pred EEEEEccCce---eeeeecccccceeEEEEecCCCE-EEEEeCCCcEEEEeCCCCceee--eEecCCcc---ceEEEEeC
Q 047355 83 IRVFDYNTMA---SVKEFEAHEDYIRSLAVHPTFPF-VLTASDDKLIKLWDWEKNWECT--QTFEGHSH---YVMQSAFN 153 (312)
Q Consensus 83 i~iwd~~~~~---~~~~~~~h~~~i~~~~~~~~~~~-l~t~s~d~~v~iwd~~~~~~~~--~~~~~~~~---~v~~~~~~ 153 (312)
+++=.+.... ..+.+..|.++|.-++.-|+..+ +.+++.|+.++-.|++...... ..-..+.. ....++.+
T Consensus 211 vr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~ 290 (559)
T KOG1334|consen 211 VRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVD 290 (559)
T ss_pred eeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecC
Confidence 9987654322 24556789999999999987754 7799999999999987542211 11122222 34567788
Q ss_pred CCCCCEEEEEeCCCeEEEEEcCCCcce------eeecc------cccceeEEEEEEcCCceEEEEEeCCCeEEEEeCC--
Q 047355 154 PKDLNTFASASLDGTIQIWNMDSSAAK------FTLDA------HEKGINCIDYFITSDKVYLITGSDDFTVKVWDYE-- 219 (312)
Q Consensus 154 ~~~~~~~~s~s~dg~v~iwd~~~~~~~------~~~~~------~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~-- 219 (312)
|.+.+.|++++.|..+++||.+..... ..+.. ....|+++.| +.++.-+.+.-.|-.|+++.-.
T Consensus 291 P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Y--sh~~sElLaSYnDe~IYLF~~~~~ 368 (559)
T KOG1334|consen 291 PRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVY--SHDGSELLASYNDEDIYLFNKSMG 368 (559)
T ss_pred CCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEe--cCCccceeeeecccceEEeccccc
Confidence 888889999999999999998753221 22211 1234677765 4344445566677789999432
Q ss_pred CC----------eEE-EEeccccc--CeEEEEEe-CCCcEEEEEeCCCcEEEEeCCCcceeeecccCccceEEEEEecCC
Q 047355 220 TK----------TCV-QILEGHTN--NVTAVCFH-PELRIIITASEDGTILIWNATTFRLQNTLSSGLERVWSIGYKKGS 285 (312)
Q Consensus 220 ~~----------~~~-~~~~~h~~--~i~~l~~~-~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 285 (312)
.+ ... +.+++|.. .|..+-|- |...++++||.-|.|.||+-.+++.++-+++....|.||.=+|-.
T Consensus 369 ~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~ 448 (559)
T KOG1334|consen 369 DGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHL 448 (559)
T ss_pred cCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCC
Confidence 12 122 33788964 58888875 788999999999999999999999999999888899999999999
Q ss_pred CeEEEEecCCeEEEEecc
Q 047355 286 NQVAFGCDNGTLIVKIGN 303 (312)
Q Consensus 286 ~~l~~~~~~g~i~v~~~~ 303 (312)
-.||+++-|.-|+||-+.
T Consensus 449 PvLAsSGid~DVKIWTP~ 466 (559)
T KOG1334|consen 449 PVLASSGIDHDVKIWTPL 466 (559)
T ss_pred chhhccCCccceeeecCC
Confidence 999999999999999874
No 177
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.84 E-value=2.4e-19 Score=142.66 Aligned_cols=233 Identities=19% Similarity=0.298 Sum_probs=182.3
Q ss_pred cCcEEEEEE-------cCCCCeEEEEecCCeEEEEeccCCceeeeEEecC-----CceeEEEEeeCCcEEEEecCCCeEE
Q 047355 17 SDRVKSVDF-------HPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTD-----SPVRTAKFVAREHWIVCGSDDKFIR 84 (312)
Q Consensus 17 ~~~i~~~~~-------~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~g~~dg~i~ 84 (312)
.+.|+.-+| .|+..+.++.+.+.-|.+||.-+++...+++..+ ....++.|++||.+|++|- .+.|+
T Consensus 104 g~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcir 182 (406)
T KOG2919|consen 104 GETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIR 182 (406)
T ss_pred CCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEE
Confidence 456777777 3777889999999999999998888887776432 2456889999999999875 47999
Q ss_pred EEEcc-Ccee--eee-----ecccccceeEEEEecCCC-EEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCC
Q 047355 85 VFDYN-TMAS--VKE-----FEAHEDYIRSLAVHPTFP-FVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPK 155 (312)
Q Consensus 85 iwd~~-~~~~--~~~-----~~~h~~~i~~~~~~~~~~-~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 155 (312)
++|+. .+.. ... ..+..+-|.+++++|... .++.|+...++-|+..... .+...+.+|..-|..+.|.+.
T Consensus 183 vFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~-~pl~llggh~gGvThL~~~ed 261 (406)
T KOG2919|consen 183 VFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR-RPLQLLGGHGGGVTHLQWCED 261 (406)
T ss_pred EeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCC-CceeeecccCCCeeeEEeccC
Confidence 99984 3321 111 123356788999999765 7889998888888875543 566777899999999999985
Q ss_pred CCCEEEEEeC-CCeEEEEEcCCC-cceeeecccccce-eEEEEEEcCCceEEEEEeCCCeEEEEeCCC-CeEEEEecccc
Q 047355 156 DLNTFASASL-DGTIQIWNMDSS-AAKFTLDAHEKGI-NCIDYFITSDKVYLITGSDDFTVKVWDYET-KTCVQILEGHT 231 (312)
Q Consensus 156 ~~~~~~s~s~-dg~v~iwd~~~~-~~~~~~~~~~~~v-~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~-~~~~~~~~~h~ 231 (312)
++.|.+|+. |-.|-.||++.. .++..+..|.... .-+-|...+++.+|++|+.||.|++||++. +.....+..|.
T Consensus 262 -Gn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~s 340 (406)
T KOG2919|consen 262 -GNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYS 340 (406)
T ss_pred -cCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccccccc
Confidence 577777764 778999999864 4556666665532 234466788999999999999999999987 66677788899
Q ss_pred cCeEEEEEeCCCcEEEEEeCC
Q 047355 232 NNVTAVCFHPELRIIITASED 252 (312)
Q Consensus 232 ~~i~~l~~~~~~~~l~s~s~d 252 (312)
..++.++++|--+++|+++..
T Consensus 341 d~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 341 DTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred ccccceecCcccceeeeccCc
Confidence 999999999998888888865
No 178
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.83 E-value=7.3e-18 Score=136.40 Aligned_cols=233 Identities=15% Similarity=0.209 Sum_probs=167.8
Q ss_pred eeEEEEeeCCcEEEEecCCCeEEEEEccCceeeeeecccccceeEEEEecCCCEEEEEeCCC--cEEEEeCCCCceeeeE
Q 047355 62 VRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDK--LIKLWDWEKNWECTQT 139 (312)
Q Consensus 62 v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~--~v~iwd~~~~~~~~~~ 139 (312)
+....|+.+...|..|+.||. ++|+.+..............|--+-|+. .+++..+.+. .+++.+.+..... ..
T Consensus 8 i~~~~~Nqd~~~lsvGs~~Gy-k~~~~~~~~k~~~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~I-Ce 83 (391)
T KOG2110|consen 8 INFIGFNQDSTLLSVGSKDGY-KIFSCSPFEKCFSKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTTI-CE 83 (391)
T ss_pred eeeeeeccceeEEEccCCCce-eEEecCchHHhhcccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEcccCceE-EE
Confidence 444458888888889999985 7887766543222222233455555654 3455444433 4888887654221 11
Q ss_pred ecCCccceEEEEeCCCCCCEEEEEeCCCeEEEEEcCCCcceeeeccc-ccceeEEEEEEcCCceEEEEE--eCCCeEEEE
Q 047355 140 FEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAH-EKGINCIDYFITSDKVYLITG--SDDFTVKVW 216 (312)
Q Consensus 140 ~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~sg--~~dg~i~vw 216 (312)
+. -...+..+.++. +.++++-++. |+|||++..+.+.++... ..+-..+++.++.++.+++-- ...|.|.+|
T Consensus 84 ~~-fpt~IL~VrmNr---~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~ 158 (391)
T KOG2110|consen 84 IF-FPTSILAVRMNR---KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLF 158 (391)
T ss_pred Ee-cCCceEEEEEcc---ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEE
Confidence 11 124567777764 5677765554 999999999888777543 222233444556666677642 347899999
Q ss_pred eCCCCeEEEEecccccCeEEEEEeCCCcEEEEEeCCCc-EEEEeCCCcceeeecccC--ccceEEEEEecCCCeEEEEec
Q 047355 217 DYETKTCVQILEGHTNNVTAVCFHPELRIIITASEDGT-ILIWNATTFRLQNTLSSG--LERVWSIGYKKGSNQVAFGCD 293 (312)
Q Consensus 217 d~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~s~dg~-v~iwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~ 293 (312)
|..+.+....+..|.+++-+++|+++|.+|||+|+.|+ ||+|.+++++...++... ..++.+++|+|++++|++.++
T Consensus 159 d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~ 238 (391)
T KOG2110|consen 159 DTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSN 238 (391)
T ss_pred EcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecC
Confidence 99999999999999999999999999999999999996 899999999988887765 456899999999999999999
Q ss_pred CCeEEEEecc
Q 047355 294 NGTLIVKIGN 303 (312)
Q Consensus 294 ~g~i~v~~~~ 303 (312)
.++|.|--.+
T Consensus 239 TeTVHiFKL~ 248 (391)
T KOG2110|consen 239 TETVHIFKLE 248 (391)
T ss_pred CCeEEEEEec
Confidence 9999875444
No 179
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.83 E-value=4.4e-18 Score=133.66 Aligned_cols=279 Identities=17% Similarity=0.235 Sum_probs=194.3
Q ss_pred cEEEEEEc--CCC-CeEEEEec----CCeEEEEeccC--Cceeee-EEecCCceeEEEEeeCCc-----EEEEecCCCeE
Q 047355 19 RVKSVDFH--PTQ-PWVLASLY----SGTVCIWNYHS--QTTEKS-VKVTDSPVRTAKFVAREH-----WIVCGSDDKFI 83 (312)
Q Consensus 19 ~i~~~~~~--~~~-~~l~~~~~----dg~v~iw~~~~--~~~~~~-~~~~~~~v~~~~~~~~~~-----~l~~g~~dg~i 83 (312)
.+++++|+ |+. -+|+.|+. ..+|.|-.++. .+.... .-.+..|++.+.|.|+.. .|++. . -.+
T Consensus 46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs-~-D~L 123 (364)
T KOG0290|consen 46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATS-S-DFL 123 (364)
T ss_pred ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhcc-c-CeE
Confidence 68899998 444 46777763 46777776642 222211 124567899999998753 34443 3 479
Q ss_pred EEEEccCcee----e-----eeecccccceeEEEEecC-CCEEEEEeCCCcEEEEeCCCCce--eeeEecCCccceEEEE
Q 047355 84 RVFDYNTMAS----V-----KEFEAHEDYIRSLAVHPT-FPFVLTASDDKLIKLWDWEKNWE--CTQTFEGHSHYVMQSA 151 (312)
Q Consensus 84 ~iwd~~~~~~----~-----~~~~~h~~~i~~~~~~~~-~~~l~t~s~d~~v~iwd~~~~~~--~~~~~~~~~~~v~~~~ 151 (312)
|+|.+...+. . .+-..+..++++..|+.- -++|.+.|-|.++.|||++.+.. ....+-.|...|..++
T Consensus 124 RlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIa 203 (364)
T KOG0290|consen 124 RLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIA 203 (364)
T ss_pred EEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEE
Confidence 9998864211 1 122356678999999864 46778999999999999987522 3345678999999999
Q ss_pred eCCCCCCEEEEEeCCCeEEEEEcCCCccee-eeccc--ccceeEEEEEEcCCceEEEEEeC-CCeEEEEeCCC-CeEEEE
Q 047355 152 FNPKDLNTFASASLDGTIQIWNMDSSAAKF-TLDAH--EKGINCIDYFITSDKVYLITGSD-DFTVKVWDYET-KTCVQI 226 (312)
Q Consensus 152 ~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~-~~~~~--~~~v~~~~~~~~~~~~~l~sg~~-dg~i~vwd~~~-~~~~~~ 226 (312)
|.....+.|++.+.||+||+||++...--. ..+.. ..+..-+++. ..|.+++|+-.. ..+|.+-|++. ..++..
T Consensus 204 f~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswn-kqDpnymATf~~dS~~V~iLDiR~P~tpva~ 282 (364)
T KOG0290|consen 204 FLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWN-KQDPNYMATFAMDSNKVVILDIRVPCTPVAR 282 (364)
T ss_pred eccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccC-cCCchHHhhhhcCCceEEEEEecCCCcceeh
Confidence 998778899999999999999999754322 22222 2233333332 335567776544 45799999985 467888
Q ss_pred ecccccCeEEEEEeCC-CcEEEEEeCCCcEEEEeCCCcceeee-----cccCccceEEEEEec-CCCeEEEEecCCeEEE
Q 047355 227 LEGHTNNVTAVCFHPE-LRIIITASEDGTILIWNATTFRLQNT-----LSSGLERVWSIGYKK-GSNQVAFGCDNGTLIV 299 (312)
Q Consensus 227 ~~~h~~~i~~l~~~~~-~~~l~s~s~dg~v~iwd~~~~~~~~~-----~~~~~~~v~~~~~~~-~~~~l~~~~~~g~i~v 299 (312)
+++|.+.|++++|.|. ...|+|++.|..+.+||+...-.... .-....+|..+.|++ .++.|+.+.++..-.+
T Consensus 283 L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~kkleiL 362 (364)
T KOG0290|consen 283 LRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICFGKKLEIL 362 (364)
T ss_pred hhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEecCeeeEE
Confidence 9999999999999996 46799999999999999976422110 011245788999984 6788888887766555
Q ss_pred E
Q 047355 300 K 300 (312)
Q Consensus 300 ~ 300 (312)
+
T Consensus 363 R 363 (364)
T KOG0290|consen 363 R 363 (364)
T ss_pred e
Confidence 4
No 180
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.83 E-value=5.8e-17 Score=138.87 Aligned_cols=263 Identities=13% Similarity=0.175 Sum_probs=169.3
Q ss_pred EEecCCeEEEEeccC-Cc--eeeeEEecCCceeEEEEeeCCcEEEEec-CCCeEEEEEccC-cee--eeeecccccceeE
Q 047355 34 ASLYSGTVCIWNYHS-QT--TEKSVKVTDSPVRTAKFVAREHWIVCGS-DDKFIRVFDYNT-MAS--VKEFEAHEDYIRS 106 (312)
Q Consensus 34 ~~~~dg~v~iw~~~~-~~--~~~~~~~~~~~v~~~~~~~~~~~l~~g~-~dg~i~iwd~~~-~~~--~~~~~~h~~~i~~ 106 (312)
+...++.|++|++.. ++ ..+.+.. .+....+.+++++++|++++ .++.|.+|+++. +.. ..... ..+....
T Consensus 7 ~~~~~~~I~~~~~~~~g~l~~~~~~~~-~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~ 84 (330)
T PRK11028 7 ASPESQQIHVWNLNHEGALTLLQVVDV-PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTH 84 (330)
T ss_pred EcCCCCCEEEEEECCCCceeeeeEEec-CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceE
Confidence 346789999999963 22 3333432 24456788999999988765 478899999863 221 22221 2234568
Q ss_pred EEEecCCCEEEEEeC-CCcEEEEeCCCCce---eeeEecCCccceEEEEeCCCCCCEEEEEeCCCeEEEEEcCCCccee-
Q 047355 107 LAVHPTFPFVLTASD-DKLIKLWDWEKNWE---CTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKF- 181 (312)
Q Consensus 107 ~~~~~~~~~l~t~s~-d~~v~iwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~- 181 (312)
++++|+++++++++. ++.+.+|++..... ....+.+ ......+.++|.+...+++...++.|.+||+++.....
T Consensus 85 i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~-~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~ 163 (330)
T PRK11028 85 ISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEG-LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVA 163 (330)
T ss_pred EEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccC-CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccc
Confidence 999999998887664 88999999864321 1222222 22334567888654455666678999999997633221
Q ss_pred ------eecccccceeEEEEEEcCCceEEEEEeC-CCeEEEEeCCC--Ce--EEEEeccc------ccCeEEEEEeCCCc
Q 047355 182 ------TLDAHEKGINCIDYFITSDKVYLITGSD-DFTVKVWDYET--KT--CVQILEGH------TNNVTAVCFHPELR 244 (312)
Q Consensus 182 ------~~~~~~~~v~~~~~~~~~~~~~l~sg~~-dg~i~vwd~~~--~~--~~~~~~~h------~~~i~~l~~~~~~~ 244 (312)
.... ......+. ++++++++++... ++.|.+|++.. ++ ....+..+ ......+.|+|+++
T Consensus 164 ~~~~~~~~~~-g~~p~~~~--~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~ 240 (330)
T PRK11028 164 QEPAEVTTVE-GAGPRHMV--FHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGR 240 (330)
T ss_pred cCCCceecCC-CCCCceEE--ECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCC
Confidence 1111 12233444 5788888877765 89999999863 32 33333222 11234688999999
Q ss_pred EEEEEeC-CCcEEEEeCCCcc----eeeecccCccceEEEEEecCCCeEEEEec-CCeEEEEecc
Q 047355 245 IIITASE-DGTILIWNATTFR----LQNTLSSGLERVWSIGYKKGSNQVAFGCD-NGTLIVKIGN 303 (312)
Q Consensus 245 ~l~s~s~-dg~v~iwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~g~i~v~~~~ 303 (312)
+++++.. ++.|.+|++.... +...... ....+.+.|+|+|+.|.++.. +++|.|+-.+
T Consensus 241 ~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 241 HLYACDRTASLISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred EEEEecCCCCeEEEEEEeCCCCeEEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 8888754 7899999985432 2222222 234568899999999998776 7888877543
No 181
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=7.5e-19 Score=140.67 Aligned_cols=253 Identities=21% Similarity=0.348 Sum_probs=174.5
Q ss_pred hhhhhhhcccCcEEEEEEcCC-C-CeEEEEecCCeEEEEeccCCceeeeEEe--cC-CceeEEEEeeCCcEEEEecC---
Q 047355 8 QIEKEFIQKSDRVKSVDFHPT-Q-PWVLASLYSGTVCIWNYHSQTTEKSVKV--TD-SPVRTAKFVAREHWIVCGSD--- 79 (312)
Q Consensus 8 ~~~~~~~~~~~~i~~~~~~~~-~-~~l~~~~~dg~v~iw~~~~~~~~~~~~~--~~-~~v~~~~~~~~~~~l~~g~~--- 79 (312)
+...+|.++...++.++|..+ + ..+.+|+.||+|++||+........+.- +. .+..++....+++.+++|.+
T Consensus 61 ~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~ 140 (376)
T KOG1188|consen 61 QLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTR 140 (376)
T ss_pred hhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEecccccc
Confidence 345567888899999999763 4 5678999999999999987655444432 22 24445555556778888864
Q ss_pred -CCeEEEEEccCcee-eee-ecccccceeEEEEecCC-CEEEEEeCCCcEEEEeCCCCcee--eeEecCCccceEEEEeC
Q 047355 80 -DKFIRVFDYNTMAS-VKE-FEAHEDYIRSLAVHPTF-PFVLTASDDKLIKLWDWEKNWEC--TQTFEGHSHYVMQSAFN 153 (312)
Q Consensus 80 -dg~i~iwd~~~~~~-~~~-~~~h~~~i~~~~~~~~~-~~l~t~s~d~~v~iwd~~~~~~~--~~~~~~~~~~v~~~~~~ 153 (312)
+-.+.+||++..+. +.. .+.|.+.|+++.|||.. ++|++||-||.|.+||++...+. +...-.+...|-.+.|.
T Consensus 141 s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~ 220 (376)
T KOG1188|consen 141 SDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWL 220 (376)
T ss_pred CceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeee
Confidence 67899999987654 433 37899999999999976 57889999999999998754221 22223355667788898
Q ss_pred CCCCCEEEEEeCCCeEEEEEcCCCcceeeeccccc----------ceeEEEEEEcCCceE-EEEEeCCCeEEEEeC---C
Q 047355 154 PKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEK----------GINCIDYFITSDKVY-LITGSDDFTVKVWDY---E 219 (312)
Q Consensus 154 ~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~~~~----------~v~~~~~~~~~~~~~-l~sg~~dg~i~vwd~---~ 219 (312)
.+....+..-+..++..+|+++.+.....++.... --+.+......+... .+.|+..++..++-+ .
T Consensus 221 ~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~ 300 (376)
T KOG1188|consen 221 SKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTS 300 (376)
T ss_pred cCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecc
Confidence 77777899999999999999987665433322110 011222221223333 444443555555432 2
Q ss_pred C---CeEEEEecc-cccCeEEEEEeCCCcEEEEEeCCCcEEEEeC
Q 047355 220 T---KTCVQILEG-HTNNVTAVCFHPELRIIITASEDGTILIWNA 260 (312)
Q Consensus 220 ~---~~~~~~~~~-h~~~i~~l~~~~~~~~l~s~s~dg~v~iwd~ 260 (312)
+ .+.+..+.+ |..-|+++.|...+..+.||++||.+.+|..
T Consensus 301 s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 301 SGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred cccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 2 233445555 6677899999988899999999999999985
No 182
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.82 E-value=1.6e-16 Score=126.44 Aligned_cols=237 Identities=16% Similarity=0.284 Sum_probs=163.3
Q ss_pred cEEEEEEcCCCCeEEEEecCCeEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEE-EecCC------CeEEEEEccCc
Q 047355 19 RVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIV-CGSDD------KFIRVFDYNTM 91 (312)
Q Consensus 19 ~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~g~~d------g~i~iwd~~~~ 91 (312)
...+++|+.|..-.++|.++ -.+||+.+.-+....-+.......-+...-..++|+ .|+.+ +.+.+||-...
T Consensus 7 ~~lsvs~NQD~ScFava~~~-Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~ 85 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDT-GFRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKE 85 (346)
T ss_pred ceeEEEEccCCceEEEEecC-ceEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccC
Confidence 45569999998776666554 469999887554433333333333333333334443 34433 57999996555
Q ss_pred eeeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEE--EeCCCeE
Q 047355 92 ASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFAS--ASLDGTI 169 (312)
Q Consensus 92 ~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s--~s~dg~v 169 (312)
.++.++. -..+|.++.+.++. |++. ..+.|.+|....+.+....++...++---....|.....+++ |-.-|.|
T Consensus 86 ~~i~el~-f~~~I~~V~l~r~r--iVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~Gqv 161 (346)
T KOG2111|consen 86 RCIIELS-FNSEIKAVKLRRDR--IVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQV 161 (346)
T ss_pred cEEEEEE-eccceeeEEEcCCe--EEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceE
Confidence 5665553 45789999988763 4433 357899999876555554444332221122233332222222 4567899
Q ss_pred EEEEcCCCcc--eeeecccccceeEEEEEEcCCceEEEEEeCCCe-EEEEeCCCCeEEEEeccc--ccCeEEEEEeCCCc
Q 047355 170 QIWNMDSSAA--KFTLDAHEKGINCIDYFITSDKVYLITGSDDFT-VKVWDYETKTCVQILEGH--TNNVTAVCFHPELR 244 (312)
Q Consensus 170 ~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~-i~vwd~~~~~~~~~~~~h--~~~i~~l~~~~~~~ 244 (312)
+|-|+..... ...+.+|...+.|+.. .-+|..+|++|..|+ |++||.+++++++.++-- ...|.+++|||+..
T Consensus 162 Qi~dL~~~~~~~p~~I~AH~s~Iacv~L--n~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s 239 (346)
T KOG2111|consen 162 QIVDLASTKPNAPSIINAHDSDIACVAL--NLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSS 239 (346)
T ss_pred EEEEhhhcCcCCceEEEcccCceeEEEE--cCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCcc
Confidence 9999987665 4778999999999984 678999999999997 789999999999887532 34799999999999
Q ss_pred EEEEEeCCCcEEEEeCCC
Q 047355 245 IIITASEDGTILIWNATT 262 (312)
Q Consensus 245 ~l~s~s~dg~v~iwd~~~ 262 (312)
+||+.|+.|+|.||.+..
T Consensus 240 ~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 240 WLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred EEEEEcCCCeEEEEEeec
Confidence 999999999999998754
No 183
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.81 E-value=4.4e-18 Score=138.71 Aligned_cols=225 Identities=13% Similarity=0.249 Sum_probs=159.7
Q ss_pred hhcccCcEEEEEEcCCC-CeEEEEecCCeEEEEeccCC-------ceeeeEEecCCceeEEEEeeC-CcEEEEecCCCeE
Q 047355 13 FIQKSDRVKSVDFHPTQ-PWVLASLYSGTVCIWNYHSQ-------TTEKSVKVTDSPVRTAKFVAR-EHWIVCGSDDKFI 83 (312)
Q Consensus 13 ~~~~~~~i~~~~~~~~~-~~l~~~~~dg~v~iw~~~~~-------~~~~~~~~~~~~v~~~~~~~~-~~~l~~g~~dg~i 83 (312)
+-+|..+|..++|+|-. ..+|+|++|.+|.||.+... +....+.+|...|..+.|+|. .+.|++++.|.+|
T Consensus 77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v 156 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTV 156 (472)
T ss_pred ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceE
Confidence 55899999999999954 57889999999999998643 345667889989999999986 4568899999999
Q ss_pred EEEEccCceeeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEecCCcc-ceEEEEeCCCCCCEEEE
Q 047355 84 RVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSH-YVMQSAFNPKDLNTFAS 162 (312)
Q Consensus 84 ~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~s 162 (312)
.+||+.+++.+-.+. |.+-|.++.|+.+|.+++|.+.|..|||||.++.. ....-.+|.. .-..+.|-. ++..+-+
T Consensus 157 ~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~-~v~e~~~heG~k~~Raifl~-~g~i~tT 233 (472)
T KOG0303|consen 157 SIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGT-VVSEGVAHEGAKPARAIFLA-SGKIFTT 233 (472)
T ss_pred EEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCc-EeeecccccCCCcceeEEec-cCceeee
Confidence 999999998777776 99999999999999999999999999999988763 3333345543 233445554 3444544
Q ss_pred Ee---CCCeEEEEEcCCCcceeeecccc--cceeEEEEEEcCC-ceEEEEEeCCCeEEEEeCCCCeE-EEEecc--cccC
Q 047355 163 AS---LDGTIQIWNMDSSAAKFTLDAHE--KGINCIDYFITSD-KVYLITGSDDFTVKVWDYETKTC-VQILEG--HTNN 233 (312)
Q Consensus 163 ~s---~dg~v~iwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~-~~~l~sg~~dg~i~vwd~~~~~~-~~~~~~--h~~~ 233 (312)
|. .+..+-+||..+.+....++.-. .+|.-. | .++| +...++|-.|+.|+.|.+....+ ++.+.. ..++
T Consensus 234 Gfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~P-F-yD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~ep 311 (472)
T KOG0303|consen 234 GFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLP-F-YDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEP 311 (472)
T ss_pred ccccccccceeccCcccccCcceeEEeccCCceEEe-e-ecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccCCc
Confidence 43 46689999987754433222211 222222 2 2333 44456777899999999876543 222221 2334
Q ss_pred eEEEEEeCC
Q 047355 234 VTAVCFHPE 242 (312)
Q Consensus 234 i~~l~~~~~ 242 (312)
-+.+.|-|.
T Consensus 312 QRG~g~mPK 320 (472)
T KOG0303|consen 312 QRGMGFMPK 320 (472)
T ss_pred ccccccccc
Confidence 556666654
No 184
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.80 E-value=1.3e-17 Score=147.34 Aligned_cols=244 Identities=20% Similarity=0.261 Sum_probs=182.5
Q ss_pred cCcEEEEEEcCCC-CeEEEEecCCeEEEEeccCCce--ee----eEEecCCceeEEEEeeCCcE--EEEecCCCeEEEEE
Q 047355 17 SDRVKSVDFHPTQ-PWVLASLYSGTVCIWNYHSQTT--EK----SVKVTDSPVRTAKFVAREHW--IVCGSDDKFIRVFD 87 (312)
Q Consensus 17 ~~~i~~~~~~~~~-~~l~~~~~dg~v~iw~~~~~~~--~~----~~~~~~~~v~~~~~~~~~~~--l~~g~~dg~i~iwd 87 (312)
...|.++.|+|.. ..|+.|..+|.|.+||+..... .. ....|..++..+.|..+... +++++.||.|..|+
T Consensus 242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~ 321 (555)
T KOG1587|consen 242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWD 321 (555)
T ss_pred CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeee
Confidence 4689999999965 4666788999999999975543 21 22346778999999876554 99999999999998
Q ss_pred ccCceeeee-----ecc-------cccceeEEEEecCCC-EEEEEeCCCcEEEEeCCCC---c----eeeeEecCCccce
Q 047355 88 YNTMASVKE-----FEA-------HEDYIRSLAVHPTFP-FVLTASDDKLIKLWDWEKN---W----ECTQTFEGHSHYV 147 (312)
Q Consensus 88 ~~~~~~~~~-----~~~-------h~~~i~~~~~~~~~~-~l~t~s~d~~v~iwd~~~~---~----~~~~~~~~~~~~v 147 (312)
++....... ... ....++++.|.+... .++.|+.+|.|..-+.... . +....+..|...+
T Consensus 322 ~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v 401 (555)
T KOG1587|consen 322 TDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPV 401 (555)
T ss_pred ccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcce
Confidence 765432110 111 123578899988654 5788999999887443322 1 1122456678889
Q ss_pred EEEEeCCCCCCEEEEEeCCCeEEEEEcC-CCcceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCC--eEE
Q 047355 148 MQSAFNPKDLNTFASASLDGTIQIWNMD-SSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETK--TCV 224 (312)
Q Consensus 148 ~~~~~~~~~~~~~~s~s~dg~v~iwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~--~~~ 224 (312)
..+.++|.....|++++ |.+++||... ...+...+..+...+..++|.+.. ...++++..||.|.+||+... .+.
T Consensus 402 ~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptr-pavF~~~d~~G~l~iWDLl~~~~~Pv 479 (555)
T KOG1587|consen 402 YAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTR-PAVFATVDGDGNLDIWDLLQDDEEPV 479 (555)
T ss_pred EeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcC-ceEEEEEcCCCceehhhhhccccCCc
Confidence 99999998877788877 9999999988 667777777777778999987654 467888999999999998643 344
Q ss_pred EEecccccCeEEEEEeCCCcEEEEEeCCCcEEEEeCCC
Q 047355 225 QILEGHTNNVTAVCFHPELRIIITASEDGTILIWNATT 262 (312)
Q Consensus 225 ~~~~~h~~~i~~l~~~~~~~~l~s~s~dg~v~iwd~~~ 262 (312)
....-+....+.+.|++.++.|+.|...|.+.++++..
T Consensus 480 ~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 480 LSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred ccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 44444556677888899999999999999999999964
No 185
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.80 E-value=4.6e-18 Score=138.60 Aligned_cols=204 Identities=22% Similarity=0.295 Sum_probs=159.4
Q ss_pred eecccccceeEEEEecCC-CEEEEEeCCCcEEEEeCCCC------ceeeeEecCCccceEEEEeCCCCCCEEEEEeCCCe
Q 047355 96 EFEAHEDYIRSLAVHPTF-PFVLTASDDKLIKLWDWEKN------WECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGT 168 (312)
Q Consensus 96 ~~~~h~~~i~~~~~~~~~-~~l~t~s~d~~v~iwd~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~ 168 (312)
.+.+|+.+|..++|.|.+ ..|++||.|.+|++|++..+ .++...+.+|...|-.+.|+|...+.|++++.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 457999999999999965 45789999999999997533 23466789999999999999999999999999999
Q ss_pred EEEEEcCCCcceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEecccccC-eEEEEEeCCCcEEE
Q 047355 169 IQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNN-VTAVCFHPELRIII 247 (312)
Q Consensus 169 v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~-i~~l~~~~~~~~l~ 247 (312)
|.+||+.+++....+. |..-|.+++| +.||.++++.+.|..|++||.++++.+..-.+|.+. -..+.|-.++..+-
T Consensus 156 v~iWnv~tgeali~l~-hpd~i~S~sf--n~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~t 232 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLD-HPDMVYSMSF--NRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFT 232 (472)
T ss_pred EEEEeccCCceeeecC-CCCeEEEEEe--ccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceee
Confidence 9999999999888887 8888888875 678999999999999999999999998887788763 44567777888444
Q ss_pred EE---eCCCcEEEEeCCCcce---eeecccCccceEEEEEecCCCeEEEEec-CCeEE-EEecc
Q 047355 248 TA---SEDGTILIWNATTFRL---QNTLSSGLERVWSIGYKKGSNQVAFGCD-NGTLI-VKIGN 303 (312)
Q Consensus 248 s~---s~dg~v~iwd~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~g~i~-v~~~~ 303 (312)
|| .+++.+-+||....+. ..++.... .|.=-=|.+|.+.+-.++. |+.|+ +.+.+
T Consensus 233 TGfsr~seRq~aLwdp~nl~eP~~~~elDtSn-Gvl~PFyD~dt~ivYl~GKGD~~IRYyEit~ 295 (472)
T KOG0303|consen 233 TGFSRMSERQIALWDPNNLEEPIALQELDTSN-GVLLPFYDPDTSIVYLCGKGDSSIRYFEITN 295 (472)
T ss_pred eccccccccceeccCcccccCcceeEEeccCC-ceEEeeecCCCCEEEEEecCCcceEEEEecC
Confidence 33 2577899998766543 33444333 3434446788887765544 77665 44443
No 186
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.80 E-value=8.5e-18 Score=143.69 Aligned_cols=244 Identities=20% Similarity=0.259 Sum_probs=182.0
Q ss_pred eeEEecCCceeEEEEeeCCcEEEEecCCCeEEEEEccCceeeeeecccccceeEEEEecCCCE--EEEEeCCCcEEEEeC
Q 047355 53 KSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPF--VLTASDDKLIKLWDW 130 (312)
Q Consensus 53 ~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~--l~t~s~d~~v~iwd~ 130 (312)
..+.+|.+.|+++...+.|.+|++|+.||+|++|.+.++.+++.+.- .+.|.+++|+|.... |+++- ...+.+-+.
T Consensus 394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~-d~~I~~vaw~P~~~~~vLAvA~-~~~~~ivnp 471 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF-DSEIRSVAWNPLSDLCVLAVAV-GECVLIVNP 471 (733)
T ss_pred eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee-cceeEEEEecCCCCceeEEEEe-cCceEEeCc
Confidence 35678999999999999999999999999999999999999988754 347999999997753 33333 333444432
Q ss_pred CCCc------------------e------------------eeeEecCCccceEEEEeCCCCCCEEEEEeCC---CeEEE
Q 047355 131 EKNW------------------E------------------CTQTFEGHSHYVMQSAFNPKDLNTFASASLD---GTIQI 171 (312)
Q Consensus 131 ~~~~------------------~------------------~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d---g~v~i 171 (312)
.-+. . -+...-.|...|.++.|+.. +.+|++...+ ..|.|
T Consensus 472 ~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrk-GDYlatV~~~~~~~~Vli 550 (733)
T KOG0650|consen 472 IFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRK-GDYLATVMPDSGNKSVLI 550 (733)
T ss_pred cccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecC-CceEEEeccCCCcceEEE
Confidence 1000 0 00122345667888899875 4677776554 46889
Q ss_pred EEcCCCcceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEecccccCeEEEEEeCCCcEEEEEeC
Q 047355 172 WNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITASE 251 (312)
Q Consensus 172 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~s~ 251 (312)
+++.......-+......+.++.|.+ ...+++.++. ..|++||+....+++.+......|..++.+|.|.-|+.|+.
T Consensus 551 HQLSK~~sQ~PF~kskG~vq~v~FHP--s~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~ 627 (733)
T KOG0650|consen 551 HQLSKRKSQSPFRKSKGLVQRVKFHP--SKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSY 627 (733)
T ss_pred EecccccccCchhhcCCceeEEEecC--CCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecC
Confidence 99876544433433345566666654 4455665553 57999999877777766666778999999999999999999
Q ss_pred CCcEEEEeCCC-cceeeecccCccceEEEEEecCCCeEEEEecCCeEEEEec
Q 047355 252 DGTILIWNATT-FRLQNTLSSGLERVWSIGYKKGSNQVAFGCDNGTLIVKIG 302 (312)
Q Consensus 252 dg~v~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~v~~~ 302 (312)
|+.+..+|+.- -+..+++.-|...+.+|+|++.-.++++|++||+++|--+
T Consensus 628 d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg 679 (733)
T KOG0650|consen 628 DKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHG 679 (733)
T ss_pred CCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEee
Confidence 99999999864 3677788888899999999999999999999999987543
No 187
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=3.6e-18 Score=140.38 Aligned_cols=196 Identities=18% Similarity=0.291 Sum_probs=146.9
Q ss_pred eEEEEeeCCcEEEEecCCCeEEEEEccCceeeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEec-
Q 047355 63 RTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFE- 141 (312)
Q Consensus 63 ~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~- 141 (312)
..++|+.++..+++|+.||.+|+|++.+...+.....|...|.++.|+|++++|++-+.| ..+||+.++... .....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~-~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAA-LARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCch-hhhcCC
Confidence 678899999999999999999999999888888888999999999999999999999999 999999887622 22211
Q ss_pred -CCccceEEEEeCCCC--CC-EEE-EEeCCCeEEEEEcCCCc-----ceeeecccccceeEEEEEEcCCceEEEEEeCCC
Q 047355 142 -GHSHYVMQSAFNPKD--LN-TFA-SASLDGTIQIWNMDSSA-----AKFTLDAHEKGINCIDYFITSDKVYLITGSDDF 211 (312)
Q Consensus 142 -~~~~~v~~~~~~~~~--~~-~~~-s~s~dg~v~iwd~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg 211 (312)
........+.|...+ .. +++ ....-+.|+.||+..-. ...+.....+.+.+++ ++.+|++++.|+.||
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~--VS~dGkf~AlGT~dG 303 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLA--VSDDGKFLALGTMDG 303 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEE--EcCCCcEEEEeccCC
Confidence 111222334444321 12 222 23334566666653211 1112222335677776 588999999999999
Q ss_pred eEEEEeCCCCeEEEEe-cccccCeEEEEEeCCCcEEEEEeCCCcEEEEeCCC
Q 047355 212 TVKVWDYETKTCVQIL-EGHTNNVTAVCFHPELRIIITASEDGTILIWNATT 262 (312)
Q Consensus 212 ~i~vwd~~~~~~~~~~-~~h~~~i~~l~~~~~~~~l~s~s~dg~v~iwd~~~ 262 (312)
.|.+++..+.+.++.. +.|..-|+.+.|+|+.+++++.+.|.+..+..++-
T Consensus 304 sVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 304 SVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred cEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 9999999887776654 57999999999999999999999999999987653
No 188
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.80 E-value=1.5e-17 Score=147.02 Aligned_cols=237 Identities=16% Similarity=0.140 Sum_probs=162.8
Q ss_pred CCeEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEecCC---CeEEEEEccCcee--eeeecccccceeEEEEecC
Q 047355 38 SGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDD---KFIRVFDYNTMAS--VKEFEAHEDYIRSLAVHPT 112 (312)
Q Consensus 38 dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d---g~i~iwd~~~~~~--~~~~~~h~~~i~~~~~~~~ 112 (312)
+..|.+||.+... .+.+..+...+....|+|+++.|+..+.+ ..|++||+.+++. +..+.+| ....+|+|+
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPD 258 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPD 258 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCC
Confidence 4689999987654 34555566788999999999999877643 4799999987643 3333333 446899999
Q ss_pred CCEEEEEe-CCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeCCCeEEEEEcCCCcceeeeccccccee
Q 047355 113 FPFVLTAS-DDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGIN 191 (312)
Q Consensus 113 ~~~l~t~s-~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~ 191 (312)
++.|+.++ .+|...+|.+.........+..+...+....|+|.+..++++...++..++|+++..........+.. .
T Consensus 259 G~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~--~ 336 (429)
T PRK01742 259 GSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG--Y 336 (429)
T ss_pred CCEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCC--C
Confidence 99888764 68877776443211223345555556677899996533444555678888888754322212223322 2
Q ss_pred EEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEecccccCeEEEEEeCCCcEEEEEeCCCcEEEEeC--CCcceeeec
Q 047355 192 CIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITASEDGTILIWNA--TTFRLQNTL 269 (312)
Q Consensus 192 ~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~s~dg~v~iwd~--~~~~~~~~~ 269 (312)
... ++|++.+++..+.++ +.+||+.+++.......+ ...++.|+|++++|+.++.++.+.+|++ .+++...++
T Consensus 337 ~~~--~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l 411 (429)
T PRK01742 337 SAQ--ISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARL 411 (429)
T ss_pred Ccc--CCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEc
Confidence 333 578999888877765 666999887655433322 2357889999999999999998888875 357777888
Q ss_pred ccCccceEEEEEecCC
Q 047355 270 SSGLERVWSIGYKKGS 285 (312)
Q Consensus 270 ~~~~~~v~~~~~~~~~ 285 (312)
..+...+..++|+|-.
T Consensus 412 ~~~~g~~~~p~wsp~~ 427 (429)
T PRK01742 412 PGSDGQVKFPAWSPYL 427 (429)
T ss_pred cCCCCCCCCcccCCCC
Confidence 8777888899999853
No 189
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.79 E-value=1.5e-17 Score=150.41 Aligned_cols=243 Identities=16% Similarity=0.305 Sum_probs=172.5
Q ss_pred cCcEEEEEEcC--CCCeEEEEecCCeEEEEe-ccCC----ceeeeEEec-------CCceeEEEEeeCCcEEEEecCCCe
Q 047355 17 SDRVKSVDFHP--TQPWVLASLYSGTVCIWN-YHSQ----TTEKSVKVT-------DSPVRTAKFVAREHWIVCGSDDKF 82 (312)
Q Consensus 17 ~~~i~~~~~~~--~~~~l~~~~~dg~v~iw~-~~~~----~~~~~~~~~-------~~~v~~~~~~~~~~~l~~g~~dg~ 82 (312)
..+|..+.+=. |...|++|+.||.||||+ +... +....+..- .+.-.-+.|..+...|++++.-..
T Consensus 1109 ~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~ 1188 (1387)
T KOG1517|consen 1109 DTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRS 1188 (1387)
T ss_pred CCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeE
Confidence 35888988854 456899999999999996 3332 222222211 111123455666667777777899
Q ss_pred EEEEEccCceeeeeecc-cccceeEEEEe-cCCCEEEEEeCCCcEEEEeCCCCce--eeeEecCCccc--eEEEEeCCCC
Q 047355 83 IRVFDYNTMASVKEFEA-HEDYIRSLAVH-PTFPFVLTASDDKLIKLWDWEKNWE--CTQTFEGHSHY--VMQSAFNPKD 156 (312)
Q Consensus 83 i~iwd~~~~~~~~~~~~-h~~~i~~~~~~-~~~~~l~t~s~d~~v~iwd~~~~~~--~~~~~~~~~~~--v~~~~~~~~~ 156 (312)
|++||.+.....+.+.. -+..|+++.-+ +.++.++.|-.||.+++||.+.... .+.....|... |..+.+.+.+
T Consensus 1189 IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G 1268 (1387)
T KOG1517|consen 1189 IRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQG 1268 (1387)
T ss_pred EEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCC
Confidence 99999988766665532 34457777654 3468899999999999999865432 45567778776 9999998877
Q ss_pred CCEEEEEeCCCeEEEEEcCCCcce--eeecccc--c-ceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEeccc-
Q 047355 157 LNTFASASLDGTIQIWNMDSSAAK--FTLDAHE--K-GINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGH- 230 (312)
Q Consensus 157 ~~~~~s~s~dg~v~iwd~~~~~~~--~~~~~~~--~-~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h- 230 (312)
...+++|+.||.|++||++..... .++..|. + ..+++. ..+....+|+|+. +.|++|++. ++.+..++.+
T Consensus 1269 ~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~--VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~ 1344 (1387)
T KOG1517|consen 1269 LGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALT--VHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNP 1344 (1387)
T ss_pred CcceeeeccCCeEEEEecccCcccccceeeeccccCccceeee--eccCCCeeeecCc-ceEEEEecC-hhhhcccccCc
Confidence 678999999999999999975322 2233332 2 266665 4566778999998 999999985 3333333322
Q ss_pred ------ccCeEEEEEeCCCcEEEEEeCCCcEEEEeCCCc
Q 047355 231 ------TNNVTAVCFHPELRIIITASEDGTILIWNATTF 263 (312)
Q Consensus 231 ------~~~i~~l~~~~~~~~l~s~s~dg~v~iwd~~~~ 263 (312)
.+.+.|++|||..-++|+|+.|.+|.||.....
T Consensus 1345 ~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1345 GFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred ccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence 346899999999999999999999999987543
No 190
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=4.8e-18 Score=143.92 Aligned_cols=241 Identities=15% Similarity=0.288 Sum_probs=169.2
Q ss_pred hhhhhhhhhcccCcEEEEEEcCCCCeEEEEecCCeEEEEeccCCceeeeE-EecCCceeEEEEee--CCcEEEEecCCCe
Q 047355 6 ELQIEKEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSV-KVTDSPVRTAKFVA--REHWIVCGSDDKF 82 (312)
Q Consensus 6 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~-~~~~~~v~~~~~~~--~~~~l~~g~~dg~ 82 (312)
.+.+++++.+|.+.|++++|+.+|.+|++|+.|-.+.|||.-..+++..+ .+|...|.+++|.| +.+.+++|..|..
T Consensus 39 rL~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~ 118 (758)
T KOG1310|consen 39 RLDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKL 118 (758)
T ss_pred hcchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcce
Confidence 45677889999999999999999999999999999999998766666555 46788999999998 4678999999999
Q ss_pred EEEEEccCc----------eeeeeecccccceeEEEEecCC-CEEEEEeCCCcEEEEeCCCCceeeeEecCC--------
Q 047355 83 IRVFDYNTM----------ASVKEFEAHEDYIRSLAVHPTF-PFVLTASDDKLIKLWDWEKNWECTQTFEGH-------- 143 (312)
Q Consensus 83 i~iwd~~~~----------~~~~~~~~h~~~i~~~~~~~~~-~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~-------- 143 (312)
|+++|+... +...-+..|...|.-++..|.+ ..+-+++.||+++-+|++....+......+
T Consensus 119 i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~ 198 (758)
T KOG1310|consen 119 IKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNP 198 (758)
T ss_pred EEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhch
Confidence 999999752 2334467899999999999988 456799999999999997643222111111
Q ss_pred -ccceEEEEeCCCCCCEEEEEeCCCeEEEEEcCCCcceeee-----cccccceeEEEEEEcCCceEEEEEeCCCeEEEEe
Q 047355 144 -SHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTL-----DAHEKGINCIDYFITSDKVYLITGSDDFTVKVWD 217 (312)
Q Consensus 144 -~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd 217 (312)
--...++..+|....+|++|+.|--.++||.+...+...- ........|+.++ .|.+. ...+
T Consensus 199 ~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf-~p~hl----kn~~------- 266 (758)
T KOG1310|consen 199 QLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYF-SPGHL----KNSQ------- 266 (758)
T ss_pred hhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhhee-cCccc----cCcc-------
Confidence 1223567789999999999999999999996532211110 1111222233321 12110 0111
Q ss_pred CCCCeEEEEecccccCeEEEEEeCCCcEEEEEeCCCcEEEEeCCCcce
Q 047355 218 YETKTCVQILEGHTNNVTAVCFHPELRIIITASEDGTILIWNATTFRL 265 (312)
Q Consensus 218 ~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~s~dg~v~iwd~~~~~~ 265 (312)
+.... .-..++-++|+|+|..|+..=..-.|+++|+...+-
T Consensus 267 ---gn~~~----~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~ 307 (758)
T KOG1310|consen 267 ---GNLDR----YITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKS 307 (758)
T ss_pred ---ccccc----ceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCC
Confidence 11111 111367789999998777666566899999976553
No 191
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.78 E-value=3.3e-17 Score=128.76 Aligned_cols=234 Identities=18% Similarity=0.246 Sum_probs=174.3
Q ss_pred cccCcEEEEEEcCCC----CeEEEEecCCeEEEEeccCC--cee--ee-----EEecCCceeEEEEee-CCcEEEEecCC
Q 047355 15 QKSDRVKSVDFHPTQ----PWVLASLYSGTVCIWNYHSQ--TTE--KS-----VKVTDSPVRTAKFVA-REHWIVCGSDD 80 (312)
Q Consensus 15 ~~~~~i~~~~~~~~~----~~l~~~~~dg~v~iw~~~~~--~~~--~~-----~~~~~~~v~~~~~~~-~~~~l~~g~~d 80 (312)
.|.-+++.+.|.|+. +.|++. .+..+|+|.+... +.. .. -..+..++++-.|+. +.++|.+.+-|
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLAT-s~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiD 172 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLAT-SSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSID 172 (364)
T ss_pred CCCCCccceEecCCccccCcchhhc-ccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeeccc
Confidence 566789999999986 234433 3457899987632 111 11 123446777777775 56788899999
Q ss_pred CeEEEEEccCcee---eeeecccccceeEEEEecCC-CEEEEEeCCCcEEEEeCCCCceeeeEecCC--ccceEEEEeCC
Q 047355 81 KFIRVFDYNTMAS---VKEFEAHEDYIRSLAVHPTF-PFVLTASDDKLIKLWDWEKNWECTQTFEGH--SHYVMQSAFNP 154 (312)
Q Consensus 81 g~i~iwd~~~~~~---~~~~~~h~~~i~~~~~~~~~-~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~--~~~v~~~~~~~ 154 (312)
-+..+||++++.. ...+-.|.++|..++|...+ ..+++.|.||.+|+||++...-....++.. ..+..++.|++
T Consensus 173 TTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnk 252 (364)
T KOG0290|consen 173 TTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNK 252 (364)
T ss_pred CeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCc
Confidence 9999999998632 44567999999999998754 578999999999999998654333444433 46778999999
Q ss_pred CCCCEEEEEeCCC-eEEEEEcCCC-cceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeE------EEE
Q 047355 155 KDLNTFASASLDG-TIQIWNMDSS-AAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTC------VQI 226 (312)
Q Consensus 155 ~~~~~~~s~s~dg-~v~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~------~~~ 226 (312)
.+.+++++-..|. .|.|.|++.. .++..+..|+..|+.++|.+.. ..-|+++++|..+.+||+.+... +..
T Consensus 253 qDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS-~~hictaGDD~qaliWDl~q~~~~~~~dPila 331 (364)
T KOG0290|consen 253 QDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHS-SSHICTAGDDCQALIWDLQQMPRENGEDPILA 331 (364)
T ss_pred CCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCC-CceeeecCCcceEEEEecccccccCCCCchhh
Confidence 9999998877665 6999999864 5677889999999999997654 45689999999999999865321 222
Q ss_pred ecccccCeEEEEEeC-CCcEEEEEeC
Q 047355 227 LEGHTNNVTAVCFHP-ELRIIITASE 251 (312)
Q Consensus 227 ~~~h~~~i~~l~~~~-~~~~l~s~s~ 251 (312)
+. -.++|+.+.|++ .+.+++.+..
T Consensus 332 y~-a~~EVNqi~Ws~~~~Dwiai~~~ 356 (364)
T KOG0290|consen 332 YT-AGGEVNQIQWSSSQPDWIAICFG 356 (364)
T ss_pred hh-ccceeeeeeecccCCCEEEEEec
Confidence 33 466899999996 5567776664
No 192
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=8.1e-16 Score=137.06 Aligned_cols=287 Identities=14% Similarity=0.204 Sum_probs=201.2
Q ss_pred cccCcEEEEEEcCCCCeEEEEecCCeEEEEe-cc---CCceeeeEEecCCceeEEEEeeCCcEEEEecCCCeEEEEEccC
Q 047355 15 QKSDRVKSVDFHPTQPWVLASLYSGTVCIWN-YH---SQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNT 90 (312)
Q Consensus 15 ~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~-~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~ 90 (312)
.|.-.+++.++||.++++++|..||.|.+|. +. .....+.+.=|..+|.++.|+++|.+|++|+..+.+.+|.+++
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T 282 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLET 282 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecC
Confidence 3455689999999999999999999999996 33 1233455666778999999999999999999999999999999
Q ss_pred ceeeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCce--eeeEe--------cCCccceEEEEeCCCCCCEE
Q 047355 91 MASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWE--CTQTF--------EGHSHYVMQSAFNPKDLNTF 160 (312)
Q Consensus 91 ~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~--~~~~~--------~~~~~~v~~~~~~~~~~~~~ 160 (312)
.+ .+-+..-..+|..+.++|++.+.+..-.|+.|.+-....... .+..+ .........+..+| -.+.+
T Consensus 283 ~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp-r~~~~ 360 (792)
T KOG1963|consen 283 GK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDP-RTNSL 360 (792)
T ss_pred CC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcC-CCCce
Confidence 87 455566778999999999999988888899999886532211 01111 12244566778888 34678
Q ss_pred EEEeCCCeEEEEEcCCCcceeeecc-----ccc----ceeEEEEEEcCCceEEEEEeC--------CC--eEEEEeCCCC
Q 047355 161 ASASLDGTIQIWNMDSSAAKFTLDA-----HEK----GINCIDYFITSDKVYLITGSD--------DF--TVKVWDYETK 221 (312)
Q Consensus 161 ~s~s~dg~v~iwd~~~~~~~~~~~~-----~~~----~v~~~~~~~~~~~~~l~sg~~--------dg--~i~vwd~~~~ 221 (312)
+-.+..|.|++||+-+...+..+.. +.. .+...+...+..|.++++.-. || .+++|.....
T Consensus 361 vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~ 440 (792)
T KOG1963|consen 361 VLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPN 440 (792)
T ss_pred eecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCC
Confidence 8889999999999988766654421 111 122222223445788887642 33 4778865432
Q ss_pred e----E-EEEecccccCeEEEEEeC-CCc-EEEEEeCCCcEEEEeCCCcce----------eeecccCccceEEEEEecC
Q 047355 222 T----C-VQILEGHTNNVTAVCFHP-ELR-IIITASEDGTILIWNATTFRL----------QNTLSSGLERVWSIGYKKG 284 (312)
Q Consensus 222 ~----~-~~~~~~h~~~i~~l~~~~-~~~-~l~s~s~dg~v~iwd~~~~~~----------~~~~~~~~~~v~~~~~~~~ 284 (312)
. + ......|+..+...++.+ ... ..++++.||.+++|-+...+. ...-..+..++.+++|+.|
T Consensus 441 ~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~d 520 (792)
T KOG1963|consen 441 SKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQD 520 (792)
T ss_pred cceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCC
Confidence 2 1 123356887777666654 333 799999999999998743221 1111135677889999999
Q ss_pred CCeEEEEecCCeEEEEeccC
Q 047355 285 SNQVAFGCDNGTLIVKIGNS 304 (312)
Q Consensus 285 ~~~l~~~~~~g~i~v~~~~~ 304 (312)
|..| +.+-+++|.+|-.+.
T Consensus 521 Gsll-a~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 521 GSLL-AVSFDDTITIWDYDT 539 (792)
T ss_pred CcEE-EEecCCEEEEecCCC
Confidence 9555 556677888876654
No 193
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.78 E-value=1.1e-15 Score=130.86 Aligned_cols=259 Identities=11% Similarity=0.089 Sum_probs=162.8
Q ss_pred cCcEEEEEEcCCCCeEEEEe-cCCeEEEEeccC-Cce--eeeEEecCCceeEEEEeeCCcEEEEecC-CCeEEEEEccCc
Q 047355 17 SDRVKSVDFHPTQPWVLASL-YSGTVCIWNYHS-QTT--EKSVKVTDSPVRTAKFVAREHWIVCGSD-DKFIRVFDYNTM 91 (312)
Q Consensus 17 ~~~i~~~~~~~~~~~l~~~~-~dg~v~iw~~~~-~~~--~~~~~~~~~~v~~~~~~~~~~~l~~g~~-dg~i~iwd~~~~ 91 (312)
.+....++++|++++|++++ .++.|.+|+++. ++. ..... .......+.|+++++++++++. ++.|.+|++++.
T Consensus 34 ~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~ 112 (330)
T PRK11028 34 PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKD 112 (330)
T ss_pred CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCC
Confidence 35678899999999998765 578899999863 222 11121 2224567899999999988764 789999998642
Q ss_pred e----eeeeecccccceeEEEEecCCCEEEE-EeCCCcEEEEeCCCCceee------eEecCCccceEEEEeCCCCCCEE
Q 047355 92 A----SVKEFEAHEDYIRSLAVHPTFPFVLT-ASDDKLIKLWDWEKNWECT------QTFEGHSHYVMQSAFNPKDLNTF 160 (312)
Q Consensus 92 ~----~~~~~~~h~~~i~~~~~~~~~~~l~t-~s~d~~v~iwd~~~~~~~~------~~~~~~~~~v~~~~~~~~~~~~~ 160 (312)
. ....+. +......++++|+++++++ ...++.|.+||+....... ..... ......+.|+|. +.++
T Consensus 113 g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~-g~~p~~~~~~pd-g~~l 189 (330)
T PRK11028 113 GIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE-GAGPRHMVFHPN-QQYA 189 (330)
T ss_pred CCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCC-CCCCceEEECCC-CCEE
Confidence 2 222222 2234677889999998865 4557999999987532211 01111 122346788885 4566
Q ss_pred EEEeC-CCeEEEEEcCCC--c--ceeeecccc----cceeEEEEEEcCCceEEEEEe-CCCeEEEEeCCCCe----EEEE
Q 047355 161 ASASL-DGTIQIWNMDSS--A--AKFTLDAHE----KGINCIDYFITSDKVYLITGS-DDFTVKVWDYETKT----CVQI 226 (312)
Q Consensus 161 ~s~s~-dg~v~iwd~~~~--~--~~~~~~~~~----~~v~~~~~~~~~~~~~l~sg~-~dg~i~vwd~~~~~----~~~~ 226 (312)
++... +++|.+|+++.. . ....+.... .+-....+.++|++++++++. .++.|.+|++.+.. .+..
T Consensus 190 yv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~ 269 (330)
T PRK11028 190 YCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGH 269 (330)
T ss_pred EEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEE
Confidence 55554 999999999742 2 122222111 111222345678998888875 47899999985432 2222
Q ss_pred ecccccCeEEEEEeCCCcEEEEEeC-CCcEEEEeCC--Ccce--eeecccCccceEEEEE
Q 047355 227 LEGHTNNVTAVCFHPELRIIITASE-DGTILIWNAT--TFRL--QNTLSSGLERVWSIGY 281 (312)
Q Consensus 227 ~~~h~~~i~~l~~~~~~~~l~s~s~-dg~v~iwd~~--~~~~--~~~~~~~~~~v~~~~~ 281 (312)
... ....+.++|+|++++|+++.. +++|.+|++. ++.+ ..++.. .....+++|
T Consensus 270 ~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l~~~~~~~~-g~~P~~~~~ 327 (330)
T PRK11028 270 QPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGLLTELGRYAV-GQGPMWVSV 327 (330)
T ss_pred Eec-cccCCceEECCCCCEEEEEEccCCcEEEEEEcCCCCcEEEcccccc-CCCceEEEE
Confidence 221 124568999999999887775 8999999764 3333 333332 334555555
No 194
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=4.1e-16 Score=119.80 Aligned_cols=230 Identities=18% Similarity=0.282 Sum_probs=162.6
Q ss_pred eEEEEeeCCcEEEEecCCCeEEEEEccCc----------eeeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 047355 63 RTAKFVAREHWIVCGSDDKFIRVFDYNTM----------ASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEK 132 (312)
Q Consensus 63 ~~~~~~~~~~~l~~g~~dg~i~iwd~~~~----------~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~ 132 (312)
.+-+++|.++++++|..+|.|.+..+++. ..+-..++|.++|+.++|+ ..+|++|+. |.|+=|.++.
T Consensus 14 f~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~gd-G~V~gw~W~E 90 (325)
T KOG0649|consen 14 FAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGGD-GLVYGWEWNE 90 (325)
T ss_pred HHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeeccC-ceEEEeeehh
Confidence 33456788899999999999999987542 1233447899999999998 456777774 9999998864
Q ss_pred Cceeee-----E--ecCC-----ccceEEEEeCCCCCCEEEEEeCCCeEEEEEcCCCcceeeecccccceeEEEEEEcCC
Q 047355 133 NWECTQ-----T--FEGH-----SHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSD 200 (312)
Q Consensus 133 ~~~~~~-----~--~~~~-----~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 200 (312)
..+... . ...| -..|..+...|..+. ++.++.|+.++-||+.+++....+.+|...+.++..- ..
T Consensus 91 ~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enS-i~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R-~~- 167 (325)
T KOG0649|consen 91 EEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENS-ILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGR-NA- 167 (325)
T ss_pred hhhhccchhhhhhcCccccCcccCCccceeEeccCCCc-EEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeec-cc-
Confidence 322110 0 0111 234567777886644 4445589999999999999999999999999988632 23
Q ss_pred ceEEEEEeCCCeEEEEeCCCCeEEEEecc---------c-ccCeEEEEEeCCCcEEEEEeCCCcEEEEeCCCcceeeecc
Q 047355 201 KVYLITGSDDFTVKVWDYETKTCVQILEG---------H-TNNVTAVCFHPELRIIITASEDGTILIWNATTFRLQNTLS 270 (312)
Q Consensus 201 ~~~l~sg~~dg~i~vwd~~~~~~~~~~~~---------h-~~~i~~l~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~ 270 (312)
...+++|++||++++||.++.+..+.+.. | ...|-+++-+. .++++|+. ..+.+|.++..+....+.
T Consensus 168 ~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~e--dWlvCGgG-p~lslwhLrsse~t~vfp 244 (325)
T KOG0649|consen 168 NGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNE--DWLVCGGG-PKLSLWHLRSSESTCVFP 244 (325)
T ss_pred CcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccC--ceEEecCC-CceeEEeccCCCceEEEe
Confidence 34588999999999999999988876643 2 23467776544 68887774 578999998877655544
Q ss_pred cCccceEEEEEecCCCeEEEEe---------cCCeEEEEeccC
Q 047355 271 SGLERVWSIGYKKGSNQVAFGC---------DNGTLIVKIGNS 304 (312)
Q Consensus 271 ~~~~~v~~~~~~~~~~~l~~~~---------~~g~i~v~~~~~ 304 (312)
. ..+|..+.|-.| .+..++ -+|.+.+.++-+
T Consensus 245 i-pa~v~~v~F~~d--~vl~~G~g~~v~~~~l~Gvl~a~ip~~ 284 (325)
T KOG0649|consen 245 I-PARVHLVDFVDD--CVLIGGEGNHVQSYTLNGVLQANIPVE 284 (325)
T ss_pred c-ccceeEeeeecc--eEEEeccccceeeeeeccEEEEeccCC
Confidence 3 356667777544 444444 467777777653
No 195
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.77 E-value=4.4e-17 Score=141.17 Aligned_cols=229 Identities=16% Similarity=0.226 Sum_probs=177.6
Q ss_pred ceeEEEEeeCCcEEEEecCCCeEEEEEccCceeeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEe
Q 047355 61 PVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTF 140 (312)
Q Consensus 61 ~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~ 140 (312)
.|..++|-|||..|+.+..+ .+.+||...+..++.+++|.+-|++++++.+|+.+++|+.|..|.+|+-.-. -.. -
T Consensus 14 ci~d~afkPDGsqL~lAAg~-rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klE--G~L-k 89 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGS-RLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLE--GIL-K 89 (1081)
T ss_pred chheeEECCCCceEEEecCC-EEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccccc--cee-e
Confidence 68889999999988877654 6899999999999999999999999999999999999999999999985422 111 2
Q ss_pred cCCccceEEEEeCCCCCCEEEEEeCCCeEEEEEcCCCcceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCC
Q 047355 141 EGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYET 220 (312)
Q Consensus 141 ~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~ 220 (312)
-.|...+.++.|+|-. ..+++|+... --+|..... ....|...+.+..+....||.+++-|-.||+|.+-+...
T Consensus 90 YSH~D~IQCMsFNP~~-h~LasCsLsd-FglWS~~qK----~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~g 163 (1081)
T KOG1538|consen 90 YSHNDAIQCMSFNPIT-HQLASCSLSD-FGLWSPEQK----SVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNG 163 (1081)
T ss_pred eccCCeeeEeecCchH-HHhhhcchhh-ccccChhhh----hHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCC
Confidence 3588999999999964 6788887543 356665432 223445555666666788999999999999999986533
Q ss_pred CeE--EEEecccccCeEEEEEeCCC-----cEEEEEeCCCcEEEEeCCCcceeeecccCccceEEEEEecCCCeEEEEec
Q 047355 221 KTC--VQILEGHTNNVTAVCFHPEL-----RIIITASEDGTILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGCD 293 (312)
Q Consensus 221 ~~~--~~~~~~h~~~i~~l~~~~~~-----~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 293 (312)
.+. +..-.+.+++|.+++|+|.. ..++......++.++.++ ++++..-..-.-...|+.+.|+|.++..|+.
T Consensus 164 Eek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGGs 242 (1081)
T KOG1538|consen 164 EEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGGS 242 (1081)
T ss_pred CcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEEccC
Confidence 222 23334567899999999964 378888999999988875 5555544444456779999999999999999
Q ss_pred CCeEEEE
Q 047355 294 NGTLIVK 300 (312)
Q Consensus 294 ~g~i~v~ 300 (312)
++.+.+-
T Consensus 243 dk~L~~f 249 (1081)
T KOG1538|consen 243 DKQLSLF 249 (1081)
T ss_pred CCceEEE
Confidence 9987653
No 196
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.76 E-value=2.8e-15 Score=128.85 Aligned_cols=279 Identities=15% Similarity=0.220 Sum_probs=174.9
Q ss_pred EEEEEEcCCCCeEEEEecCCeEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEec-CCCeEEEEEccCceeeeeec
Q 047355 20 VKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGS-DDKFIRVFDYNTMASVKEFE 98 (312)
Q Consensus 20 i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~ 98 (312)
...+.|+|||+++++++.||.|.++|+.+.+..+.+..... -..+++++++++++++. ..+.+.++|.++.+.++.+.
T Consensus 39 h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~-~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~ 117 (369)
T PF02239_consen 39 HAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGN-PRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIP 117 (369)
T ss_dssp EEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSE-EEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE
T ss_pred eeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCC-cceEEEcCCCCEEEEEecCCCceeEeccccccceeecc
Confidence 35578999999999999999999999999998888876654 46789999999999776 57999999999999888775
Q ss_pred cc-------ccceeEEEEecCCCEEEEE-eCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeCCCeEE
Q 047355 99 AH-------EDYIRSLAVHPTFPFVLTA-SDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQ 170 (312)
Q Consensus 99 ~h-------~~~i~~~~~~~~~~~l~t~-s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~ 170 (312)
.. +..+..+..+|....++.. -+.+.|.+-|......................|+|....++++......|-
T Consensus 118 ~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~ 197 (369)
T PF02239_consen 118 TGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIA 197 (369)
T ss_dssp --EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEE
T ss_pred cccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeE
Confidence 43 3356778778887755544 445777777766543333233333455667788886544455556677999
Q ss_pred EEEcCCCcceeeec----ccccceeEE-------EEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEecccccCeEEEEE
Q 047355 171 IWNMDSSAAKFTLD----AHEKGINCI-------DYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCF 239 (312)
Q Consensus 171 iwd~~~~~~~~~~~----~~~~~v~~~-------~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~i~~l~~ 239 (312)
++|..+.+....+. .|..+...+ -|.....+.+.++.-....+.+||..+.+.++.+.....+ .-+.-
T Consensus 198 viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~t 276 (369)
T PF02239_consen 198 VIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKT 276 (369)
T ss_dssp EEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE-
T ss_pred EEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeec
Confidence 99998876665442 222222211 1111222222222222345667888889999999877766 77888
Q ss_pred eCCCcEEEEE----eCCCcEEEEeCCCcceeeecccCc-cceEEEEEecCCCeEEEEecCC--eEEEE
Q 047355 240 HPELRIIITA----SEDGTILIWNATTFRLQNTLSSGL-ERVWSIGYKKGSNQVAFGCDNG--TLIVK 300 (312)
Q Consensus 240 ~~~~~~l~s~----s~dg~v~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~g--~i~v~ 300 (312)
||+++++... ...+.|.++|.++.+...++.... .++..+.|+++|+.+-.+..++ .|.|.
T Consensus 277 hP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~ 344 (369)
T PF02239_consen 277 HPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVY 344 (369)
T ss_dssp -TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEE
T ss_pred CCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEE
Confidence 9999999988 455899999999998877775433 3589999999999876555433 45543
No 197
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.76 E-value=4.2e-16 Score=127.15 Aligned_cols=265 Identities=15% Similarity=0.201 Sum_probs=187.6
Q ss_pred hhcccCcEEEEEEcCCCC--eEEEEecCCeEEEEeccCCceeee------EEecCCceeEEEEeeCCcEEEEecCCCeEE
Q 047355 13 FIQKSDRVKSVDFHPTQP--WVLASLYSGTVCIWNYHSQTTEKS------VKVTDSPVRTAKFVAREHWIVCGSDDKFIR 84 (312)
Q Consensus 13 ~~~~~~~i~~~~~~~~~~--~l~~~~~dg~v~iw~~~~~~~~~~------~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~ 84 (312)
.....++|.+++|..+++ .+.....|..+..+.++....... ......+|...... ..+|++|-.+|.+.
T Consensus 51 ~~~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~ 128 (412)
T KOG3881|consen 51 GVDELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQ 128 (412)
T ss_pred ccchhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEE
Confidence 345567999999987664 444444777777777765443332 22334455444433 45788888999999
Q ss_pred EEEccCce----eeeeecccccceeEEEEecCCCE-EEEEeCC--CcEEEEeCCCCceeeeEecCCc-----------cc
Q 047355 85 VFDYNTMA----SVKEFEAHEDYIRSLAVHPTFPF-VLTASDD--KLIKLWDWEKNWECTQTFEGHS-----------HY 146 (312)
Q Consensus 85 iwd~~~~~----~~~~~~~h~~~i~~~~~~~~~~~-l~t~s~d--~~v~iwd~~~~~~~~~~~~~~~-----------~~ 146 (312)
+|..+.+. ....+..+ ..+..+.-++..++ +++|+.. ..+++||+.... +.+.+.. -.
T Consensus 129 ~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~---qiw~aKNvpnD~L~LrVPvW 204 (412)
T KOG3881|consen 129 VRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSK---QIWSAKNVPNDRLGLRVPVW 204 (412)
T ss_pred EEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccce---eeeeccCCCCccccceeeee
Confidence 99887432 22333333 34666666666555 5569988 899999987652 2222211 12
Q ss_pred eEEEEeCCCC-CCEEEEEeCCCeEEEEEcCCC-cceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEE
Q 047355 147 VMQSAFNPKD-LNTFASASLDGTIQIWNMDSS-AAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCV 224 (312)
Q Consensus 147 v~~~~~~~~~-~~~~~s~s~dg~v~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~ 224 (312)
++.+.|-+.. ...|++++.-+.||+||.+.+ .++.++.-.+.++.++.. .|.+.++.+|..-+.+..||.++++.+
T Consensus 205 ~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l--~p~gn~Iy~gn~~g~l~~FD~r~~kl~ 282 (412)
T KOG3881|consen 205 ITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGL--TPSGNFIYTGNTKGQLAKFDLRGGKLL 282 (412)
T ss_pred eccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeee--cCCCcEEEEecccchhheecccCceee
Confidence 3455676642 468999999999999999865 455667666778888774 577889999999999999999999888
Q ss_pred EE-ecccccCeEEEEEeCCCcEEEEEeCCCcEEEEeCCCcceeeecccCccceEEEEEecCCC
Q 047355 225 QI-LEGHTNNVTAVCFHPELRIIITASEDGTILIWNATTFRLQNTLSSGLERVWSIGYKKGSN 286 (312)
Q Consensus 225 ~~-~~~h~~~i~~l~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 286 (312)
.. +.+-.+.|++|..+|..+++|++|-|+.|||+|+.+.++++.. ....++.++-+.++.+
T Consensus 283 g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kv-YvKs~lt~il~~~~~n 344 (412)
T KOG3881|consen 283 GCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKV-YVKSRLTFILLRDDVN 344 (412)
T ss_pred ccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhh-hhhccccEEEecCCcc
Confidence 66 8888999999999999999999999999999999997766542 2334555666655443
No 198
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.75 E-value=2e-16 Score=129.53 Aligned_cols=258 Identities=15% Similarity=0.271 Sum_probs=180.3
Q ss_pred hhhhhhhhhcccCcEEEEEEcCCCCeEEEEecCCeEEEEecc--------C--------CceeeeEEecCCceeEEEEee
Q 047355 6 ELQIEKEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYH--------S--------QTTEKSVKVTDSPVRTAKFVA 69 (312)
Q Consensus 6 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~--------~--------~~~~~~~~~~~~~v~~~~~~~ 69 (312)
++...-.+.+|...|+.+.|+|+|..|++|+.+|.|.+|... + ....+....|...+..++|.+
T Consensus 54 ~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~ 133 (434)
T KOG1009|consen 54 KVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP 133 (434)
T ss_pred eEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC
Confidence 444556688899999999999999999999999999999755 1 112234566778899999999
Q ss_pred CCcEEEEecCCCeEEEEEccCceeeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCce--eee---------
Q 047355 70 REHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWE--CTQ--------- 138 (312)
Q Consensus 70 ~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~--~~~--------- 138 (312)
++.++++|+.|+.+++||+..+...+.+..|...+..++|.|-++++++-+.|...+.++.+.... ...
T Consensus 134 d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~ 213 (434)
T KOG1009|consen 134 DSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAF 213 (434)
T ss_pred CCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeeccc
Confidence 999999999999999999999999999999999999999999999999999998777776532110 000
Q ss_pred ---------Eec--CCccceEEEEeCCCCCCEEEEEe----CCCe-----EEEEEcCC-CcceeeecccccceeEEEEE-
Q 047355 139 ---------TFE--GHSHYVMQSAFNPKDLNTFASAS----LDGT-----IQIWNMDS-SAAKFTLDAHEKGINCIDYF- 196 (312)
Q Consensus 139 ---------~~~--~~~~~v~~~~~~~~~~~~~~s~s----~dg~-----v~iwd~~~-~~~~~~~~~~~~~v~~~~~~- 196 (312)
.+. ....+...+.|.|. +.++++.+ ..+. .++|+-.. .++...+.....++..+.+.
T Consensus 214 ~~~e~~s~rLfhDeTlksFFrRlsfTPd-G~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~p 292 (434)
T KOG1009|consen 214 NEREGKSTRLFHDETLKSFFRRLSFTPD-GSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSP 292 (434)
T ss_pred CCCCcceeeeeecCchhhhhhhcccCCC-CcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeee
Confidence 000 01123445677774 45555542 1222 23343221 12233333333332222211
Q ss_pred ---------------EcCCceEEEEEeCCCeEEEEeCCCCeEEEEe-cccccCeEEEEEeCCCcEEEEEeCCCcEEEEeC
Q 047355 197 ---------------ITSDKVYLITGSDDFTVKVWDYETKTCVQIL-EGHTNNVTAVCFHPELRIIITASEDGTILIWNA 260 (312)
Q Consensus 197 ---------------~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~-~~h~~~i~~l~~~~~~~~l~s~s~dg~v~iwd~ 260 (312)
.-|-+..++.++ ...|++||.++..++... .-|-..|+.++|+++|..|+..|.||..-+-.+
T Consensus 293 Vy~elrp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtf 371 (434)
T KOG1009|consen 293 VYYELRPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTF 371 (434)
T ss_pred eEEEeccccccccccccccceEEEEee-cceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEE
Confidence 112223344454 457999999987776554 347889999999999999999999999888777
Q ss_pred CCcce
Q 047355 261 TTFRL 265 (312)
Q Consensus 261 ~~~~~ 265 (312)
...++
T Consensus 372 e~~el 376 (434)
T KOG1009|consen 372 EPWEL 376 (434)
T ss_pred cchhc
Confidence 66443
No 199
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.75 E-value=1.3e-17 Score=138.56 Aligned_cols=275 Identities=15% Similarity=0.244 Sum_probs=209.8
Q ss_pred cEEEEEEcCCCCeEEEEecCCeEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEecCCCeEEEEEccCceeeeeec
Q 047355 19 RVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFE 98 (312)
Q Consensus 19 ~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~ 98 (312)
.-+.+.|..+|++|+.|+..|.|--+|+.+..+...+..-+ .|..+.|..+.++++++ ...-+.+||-.. ..++.++
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~E-tv~Dv~~LHneq~~AVA-QK~y~yvYD~~G-tElHClk 207 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVME-TVRDVTFLHNEQFFAVA-QKKYVYVYDNNG-TELHCLK 207 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhh-hhhhhhhhcchHHHHhh-hhceEEEecCCC-cEEeehh
Confidence 45788999999999999999999999999887766655433 68888999888777665 557889998654 4556666
Q ss_pred ccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeCCCeEEEEEcCCCc
Q 047355 99 AHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSA 178 (312)
Q Consensus 99 ~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~ 178 (312)
.| ..|..+.|-|.-=+|++++..|.++.-|+..+. .+..+......+..+.-+|-+ ..+-.|..+|+|.+|.....+
T Consensus 208 ~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~Gk-lVa~~~t~~G~~~vm~qNP~N-aVih~GhsnGtVSlWSP~ske 284 (545)
T KOG1272|consen 208 RH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGK-LVASIRTGAGRTDVMKQNPYN-AVIHLGHSNGTVSLWSPNSKE 284 (545)
T ss_pred hc-CchhhhcccchhheeeecccCCceEEEeechhh-hhHHHHccCCccchhhcCCcc-ceEEEcCCCceEEecCCCCcc
Confidence 66 458889999988788899999999999987663 233333334445555667754 578889999999999999999
Q ss_pred ceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEecccccCeEEEEEeCCCcEEEEEeCCCcEEEE
Q 047355 179 AKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITASEDGTILIW 258 (312)
Q Consensus 179 ~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~s~dg~v~iw 258 (312)
++..+..|..+|.++++ .++|.|+++.+.|..++|||++....++++.. .-+...++||..+ +++.|....|.||
T Consensus 285 PLvKiLcH~g~V~siAv--~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg--lLA~~~G~~v~iw 359 (545)
T KOG1272|consen 285 PLVKILCHRGPVSSIAV--DRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG--LLALSYGDHVQIW 359 (545)
T ss_pred hHHHHHhcCCCcceEEE--CCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccccc--ceeeecCCeeeee
Confidence 99899999999999984 78899999999999999999998776666554 3457788998866 4555556689999
Q ss_pred eC-CCc--ceeeecccC--ccceEEEEEecCCCeEEEEecCCeEEEEeccC
Q 047355 259 NA-TTF--RLQNTLSSG--LERVWSIGYKKGSNQVAFGCDNGTLIVKIGNS 304 (312)
Q Consensus 259 d~-~~~--~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~~g~i~v~~~~~ 304 (312)
.- -.+ ........| ...|..|.|-|-...|-.|-..|.--+-|+.+
T Consensus 360 ~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsilVPGs 410 (545)
T KOG1272|consen 360 KDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSILVPGS 410 (545)
T ss_pred hhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeEeccCC
Confidence 42 221 111111111 23789999999999999999999877777763
No 200
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.75 E-value=1.6e-15 Score=120.79 Aligned_cols=233 Identities=16% Similarity=0.274 Sum_probs=154.6
Q ss_pred eeEEEEeeCCcEEEEecCCCeEEEEEccCceeeeeeccccc--ceeEEEEecCCCEE-EEEeCC------CcEEEEeCCC
Q 047355 62 VRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHED--YIRSLAVHPTFPFV-LTASDD------KLIKLWDWEK 132 (312)
Q Consensus 62 v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~--~i~~~~~~~~~~~l-~t~s~d------~~v~iwd~~~ 132 (312)
..+++|+.|..-+++|.++| .++|+.+..+....-+-+.. .+.-|-| -.+++ +.||.+ ..+.|||-..
T Consensus 8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIWDD~k 84 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIWDDLK 84 (346)
T ss_pred eeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEEeccc
Confidence 44588999988888888887 59999876432111111111 1222222 12333 345444 5799999332
Q ss_pred CceeeeEecCCccceEEEEeCCCCCCEEEEEeCCCeEEEEEcCC-CcceeeecccccceeEEEEEEcCCceEEEE-EeCC
Q 047355 133 NWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDS-SAAKFTLDAHEKGINCIDYFITSDKVYLIT-GSDD 210 (312)
Q Consensus 133 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s-g~~d 210 (312)
. .++.++. -...|..+.+.+ ..+++. ..+.|.+|.... .+....++....+-...+..+..+..+||- |-.-
T Consensus 85 ~-~~i~el~-f~~~I~~V~l~r---~riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~ 158 (346)
T KOG2111|consen 85 E-RCIIELS-FNSEIKAVKLRR---DRIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKT 158 (346)
T ss_pred C-cEEEEEE-eccceeeEEEcC---CeEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCcc
Confidence 2 3333332 234667777765 334443 467899999874 344444433221111222223334444443 5567
Q ss_pred CeEEEEeCCCCeE--EEEecccccCeEEEEEeCCCcEEEEEeCCCc-EEEEeCCCcceeeecccC--ccceEEEEEecCC
Q 047355 211 FTVKVWDYETKTC--VQILEGHTNNVTAVCFHPELRIIITASEDGT-ILIWNATTFRLQNTLSSG--LERVWSIGYKKGS 285 (312)
Q Consensus 211 g~i~vwd~~~~~~--~~~~~~h~~~i~~l~~~~~~~~l~s~s~dg~-v~iwd~~~~~~~~~~~~~--~~~v~~~~~~~~~ 285 (312)
|.|.+-|+...+. ...+.+|.+.|.|++.+-+|..+||+|..|+ |||||..+++++.++... ...+.+++|||+.
T Consensus 159 GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~ 238 (346)
T KOG2111|consen 159 GQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNS 238 (346)
T ss_pred ceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCc
Confidence 8999999876554 4678899999999999999999999999996 899999999998888765 4679999999999
Q ss_pred CeEEEEecCCeEEEEecc
Q 047355 286 NQVAFGCDNGTLIVKIGN 303 (312)
Q Consensus 286 ~~l~~~~~~g~i~v~~~~ 303 (312)
..||++|+.||+.|=..+
T Consensus 239 s~LavsSdKgTlHiF~l~ 256 (346)
T KOG2111|consen 239 SWLAVSSDKGTLHIFSLR 256 (346)
T ss_pred cEEEEEcCCCeEEEEEee
Confidence 999999999999875544
No 201
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.75 E-value=3.1e-15 Score=121.38 Aligned_cols=235 Identities=12% Similarity=0.200 Sum_probs=168.3
Q ss_pred cCcEEEEEEcCCCCeEEEEecCCeEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEecCC--CeEEEEEccCceee
Q 047355 17 SDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDD--KFIRVFDYNTMASV 94 (312)
Q Consensus 17 ~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d--g~i~iwd~~~~~~~ 94 (312)
...++.+.|+.+...|..|+.||. ++++.+.... .+......+.-+...-...+++..+.+ +.+++++.+....+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~Gy-k~~~~~~~~k--~~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~I 81 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDGY-KIFSCSPFEK--CFSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTTI 81 (391)
T ss_pred CcceeeeeeccceeEEEccCCCce-eEEecCchHH--hhcccCCCeEEEEeecccceeEEEecCCCceEEEEEcccCceE
Confidence 456788889999999999999886 7887765433 222223334444444344555554443 56899988876655
Q ss_pred eeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEec---CCccceEEEEeCCCCCCEEEEE--eCCCeE
Q 047355 95 KEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFE---GHSHYVMQSAFNPKDLNTFASA--SLDGTI 169 (312)
Q Consensus 95 ~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~s~--s~dg~v 169 (312)
.++. ...+|.++.++.+. |+.+=.+ .|.|||++.. +.++++. .+...+..+.+++.+ .+++.- ...|.|
T Consensus 82 Ce~~-fpt~IL~VrmNr~R--LvV~Lee-~IyIydI~~M-klLhTI~t~~~n~~gl~AlS~n~~n-~ylAyp~s~t~GdV 155 (391)
T KOG2110|consen 82 CEIF-FPTSILAVRMNRKR--LVVCLEE-SIYIYDIKDM-KLLHTIETTPPNPKGLCALSPNNAN-CYLAYPGSTTSGDV 155 (391)
T ss_pred EEEe-cCCceEEEEEccce--EEEEEcc-cEEEEecccc-eeehhhhccCCCccceEeeccCCCC-ceEEecCCCCCceE
Confidence 5442 23468888887543 5555443 4999999864 3344332 334445555555432 345442 346899
Q ss_pred EEEEcCCCcceeeecccccceeEEEEEEcCCceEEEEEeCCCe-EEEEeCCCCeEEEEeccc--ccCeEEEEEeCCCcEE
Q 047355 170 QIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFT-VKVWDYETKTCVQILEGH--TNNVTAVCFHPELRII 246 (312)
Q Consensus 170 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~-i~vwd~~~~~~~~~~~~h--~~~i~~l~~~~~~~~l 246 (312)
.+||+.+.++...+.+|+..+.++++ +++|.+||++|+.|+ |+|+.+.+++.+..++-- ...|.+++|+|++++|
T Consensus 156 ~l~d~~nl~~v~~I~aH~~~lAalaf--s~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L 233 (391)
T KOG2110|consen 156 VLFDTINLQPVNTINAHKGPLAALAF--SPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFL 233 (391)
T ss_pred EEEEcccceeeeEEEecCCceeEEEE--CCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeE
Confidence 99999999999999999999999985 789999999999998 679999999988877532 2468999999999999
Q ss_pred EEEeCCCcEEEEeCCC
Q 047355 247 ITASEDGTILIWNATT 262 (312)
Q Consensus 247 ~s~s~dg~v~iwd~~~ 262 (312)
++.|..++|.+|.+..
T Consensus 234 ~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 234 AASSNTETVHIFKLEK 249 (391)
T ss_pred EEecCCCeEEEEEecc
Confidence 9999999999998754
No 202
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=5.8e-16 Score=127.48 Aligned_cols=191 Identities=15% Similarity=0.248 Sum_probs=136.5
Q ss_pred eEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeCCCeEEEEEcCCCcceeeec
Q 047355 105 RSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLD 184 (312)
Q Consensus 105 ~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~ 184 (312)
..+++++++..+++|+.||.+|+|++... ........|...|.++.|+| ++..+++.+.| ..++|+.+++.......
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~-~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~~~a~~t 224 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSM-LTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGAALARKT 224 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcc-hhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCchhhhcC
Confidence 67899999999999999999999997654 33445567888999999998 56899999999 89999999886555443
Q ss_pred ccccc--eeEEEEEEcCC--ceEEE-EEeCCCeEEEEeCCCCe---E---EEEecccccCeEEEEEeCCCcEEEEEeCCC
Q 047355 185 AHEKG--INCIDYFITSD--KVYLI-TGSDDFTVKVWDYETKT---C---VQILEGHTNNVTAVCFHPELRIIITASEDG 253 (312)
Q Consensus 185 ~~~~~--v~~~~~~~~~~--~~~l~-sg~~dg~i~vwd~~~~~---~---~~~~~~h~~~i~~l~~~~~~~~l~s~s~dg 253 (312)
...+. ...+.|...++ ..+++ .-..-+.|+.||+.... . .+.+. -...|.+++.+++|+++|.|+.||
T Consensus 225 ~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~-~~~siSsl~VS~dGkf~AlGT~dG 303 (398)
T KOG0771|consen 225 PFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIK-RFKSISSLAVSDDGKFLALGTMDG 303 (398)
T ss_pred CcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhh-ccCcceeEEEcCCCcEEEEeccCC
Confidence 22111 12222222111 12222 22334456666653211 1 11122 234699999999999999999999
Q ss_pred cEEEEeCCCcceeeec-ccCccceEEEEEecCCCeEEEEecCCeEEE
Q 047355 254 TILIWNATTFRLQNTL-SSGLERVWSIGYKKGSNQVAFGCDNGTLIV 299 (312)
Q Consensus 254 ~v~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~~g~i~v 299 (312)
.|.|++..+.+..+-. +.|..-|..|.|+||.+.+++.+.+.+.+|
T Consensus 304 sVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v 350 (398)
T KOG0771|consen 304 SVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAV 350 (398)
T ss_pred cEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeE
Confidence 9999999888765544 457889999999999999998777776553
No 203
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=5.6e-15 Score=131.77 Aligned_cols=280 Identities=14% Similarity=0.241 Sum_probs=189.6
Q ss_pred ccCcEEEEEEcCCCCeEEEEecCCeEEEEeccCCceeeeEEecCCceeEEEEeeCCc---EEEEecCCCeEEEEEccCce
Q 047355 16 KSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREH---WIVCGSDDKFIRVFDYNTMA 92 (312)
Q Consensus 16 ~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~~g~~dg~i~iwd~~~~~ 92 (312)
....-..-.|++|+++++.. .+..|.||...++.+.+.+..+..++..+.+.+... ++++.+.||.|++||.....
T Consensus 15 ~n~~~~~avfSnD~k~l~~~-~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~ 93 (792)
T KOG1963|consen 15 RNGNKSPAVFSNDAKFLFLC-TGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGE 93 (792)
T ss_pred ccceecccccccCCcEEEEe-eCCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcE
Confidence 33333445689999988755 457899999999999999999999999999987654 57789999999999999988
Q ss_pred eeeeecccccceeEEEEecC---CCEEE-EEeCCC------------cEEEEeCCCCceeee-EecCCccceEEEEeCCC
Q 047355 93 SVKEFEAHEDYIRSLAVHPT---FPFVL-TASDDK------------LIKLWDWEKNWECTQ-TFEGHSHYVMQSAFNPK 155 (312)
Q Consensus 93 ~~~~~~~h~~~i~~~~~~~~---~~~l~-t~s~d~------------~v~iwd~~~~~~~~~-~~~~~~~~v~~~~~~~~ 155 (312)
.++.+..+.. +..+.+.|. -+..+ .+..|. +.+-+.+.+...... ....+.. -..+.+++.
T Consensus 94 Llkt~~~~~~-v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~-~~~I~~~~~ 171 (792)
T KOG1963|consen 94 LLKTFDNNLP-VHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQE-PKSIVDNNS 171 (792)
T ss_pred EEEEEecCCc-eeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcC-CccEEEcCC
Confidence 8888765533 333333221 11122 111111 111111111000000 0111211 123445553
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCccee----eecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeC-C-CC--eEEEEe
Q 047355 156 DLNTFASASLDGTIQIWNMDSSAAKF----TLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDY-E-TK--TCVQIL 227 (312)
Q Consensus 156 ~~~~~~s~s~dg~v~iwd~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~-~-~~--~~~~~~ 227 (312)
..+...-.+..+.+|+..+..... .-..|...++|.+ .+|+++++|+|..||.|.+|.- . +. .....+
T Consensus 172 --ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~--~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~l 247 (792)
T KOG1963|consen 172 --GEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVA--LSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLL 247 (792)
T ss_pred --ceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEE--eccccceEEEeccCCcEEEEeccccccccccceEE
Confidence 334555566778999987754111 1123555566666 5788999999999999999953 2 11 234556
Q ss_pred cccccCeEEEEEeCCCcEEEEEeCCCcEEEEeCCCcceeeecccCccceEEEEEecCCCeEEEEecCCeEEEEecc
Q 047355 228 EGHTNNVTAVCFHPELRIIITASEDGTILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGCDNGTLIVKIGN 303 (312)
Q Consensus 228 ~~h~~~i~~l~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~v~~~~ 303 (312)
+-|..+|++++|+++|.+|++|+..+.+.+|.+.+.+ .+-+..-...+..+.++||++..+....|..|.+-...
T Consensus 248 HWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~ 322 (792)
T KOG1963|consen 248 HWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKAS 322 (792)
T ss_pred EecccccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEecc
Confidence 7789999999999999999999999999999999876 44444556779999999999999999999998876653
No 204
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.73 E-value=8.8e-17 Score=138.58 Aligned_cols=225 Identities=15% Similarity=0.207 Sum_probs=152.5
Q ss_pred CcEEEEEEcC-CCCeEEEEecCCeEEEEeccCC-------ceeeeEEecCCceeEEEEeeC-CcEEEEecCCCeEEEEEc
Q 047355 18 DRVKSVDFHP-TQPWVLASLYSGTVCIWNYHSQ-------TTEKSVKVTDSPVRTAKFVAR-EHWIVCGSDDKFIRVFDY 88 (312)
Q Consensus 18 ~~i~~~~~~~-~~~~l~~~~~dg~v~iw~~~~~-------~~~~~~~~~~~~v~~~~~~~~-~~~l~~g~~dg~i~iwd~ 88 (312)
..|..+.|+| |..+|++++.||.|++|.+... +....+..|...|.++.|+|- .+.|++++.|.+|++||+
T Consensus 628 t~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl 707 (1012)
T KOG1445|consen 628 TLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDL 707 (1012)
T ss_pred ceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeeh
Confidence 5789999999 6689999999999999987543 345677888999999999984 567889999999999999
Q ss_pred cCceeeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEecCCcc-ceEEEEeCCCCCCEEEEEeCC-
Q 047355 89 NTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSH-YVMQSAFNPKDLNTFASASLD- 166 (312)
Q Consensus 89 ~~~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~s~s~d- 166 (312)
.+++.-..+.+|++.|.+++|+|+|+.+++.+.||++++|+.+...+.++.-.+... .--.+.|.- ++.+++..+.|
T Consensus 708 ~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wac-dgr~viv~Gfdk 786 (1012)
T KOG1445|consen 708 ANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWAC-DGRIVIVVGFDK 786 (1012)
T ss_pred hhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEe-cCcEEEEecccc
Confidence 999888899999999999999999999999999999999998766555443222111 112233433 33444444433
Q ss_pred ---CeEEEEEcCCCc--ceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeE-EEEecccccCe--EEEE
Q 047355 167 ---GTIQIWNMDSSA--AKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTC-VQILEGHTNNV--TAVC 238 (312)
Q Consensus 167 ---g~v~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~-~~~~~~h~~~i--~~l~ 238 (312)
..|.+||..+.. .+.+..-.-.+-.-+-+.-...+..+++|-.|..|++|.+--..+ +..+..|.+++ ..++
T Consensus 787 ~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esPy~lpl~~f~sp~~hqGl~ 866 (1012)
T KOG1445|consen 787 SSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYESPYLLPLAPFMSPVGHQGLA 866 (1012)
T ss_pred cchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEEecCCCceeeecccccCCCccccee
Confidence 357788876533 121111000000000001112367788999999999998743332 23334444432 3566
Q ss_pred EeCCC
Q 047355 239 FHPEL 243 (312)
Q Consensus 239 ~~~~~ 243 (312)
|.+..
T Consensus 867 fl~K~ 871 (1012)
T KOG1445|consen 867 FLQKL 871 (1012)
T ss_pred eeccc
Confidence 66543
No 205
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.71 E-value=1.2e-15 Score=121.53 Aligned_cols=201 Identities=18% Similarity=0.279 Sum_probs=160.3
Q ss_pred cccceeEEEEecCCCEEEEEeCCCcEEEEeCCCC--ceeeeEecCCccceEEEEeCCCCCCEEEEEeCCCeEEEEEcCCC
Q 047355 100 HEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKN--WECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSS 177 (312)
Q Consensus 100 h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~ 177 (312)
-..+|+|.+|+++.+.++.+-....|.||..... .+...++..|...+..+.|+|. .+.+++|+.|..-++|....+
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~-snrIvtcs~drnayVw~~~~~ 87 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPK-SNRIVTCSHDRNAYVWTQPSG 87 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCC-CCceeEccCCCCccccccCCC
Confidence 3568999999999999999999999999987654 3567788999999999999996 578999999999999998543
Q ss_pred ---cceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeE----EEEecccccCeEEEEEeCCCcEEEEEe
Q 047355 178 ---AAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTC----VQILEGHTNNVTAVCFHPELRIIITAS 250 (312)
Q Consensus 178 ---~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~----~~~~~~h~~~i~~l~~~~~~~~l~s~s 250 (312)
++...+..+....+++.| +|.+..+|+|+.-..|.||-.+...- -+.-+.+++.|++++|+|++-+|++||
T Consensus 88 ~~WkptlvLlRiNrAAt~V~W--sP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs 165 (361)
T KOG1523|consen 88 GTWKPTLVLLRINRAATCVKW--SPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGS 165 (361)
T ss_pred CeeccceeEEEeccceeeEee--cCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccc
Confidence 234445567788899986 56778899999999999997764321 122345788999999999999999999
Q ss_pred CCCcEEEEeC-----CC-------------cceeeecccCccceEEEEEecCCCeEEEEecCCeEEEEecc
Q 047355 251 EDGTILIWNA-----TT-------------FRLQNTLSSGLERVWSIGYKKGSNQVAFGCDNGTLIVKIGN 303 (312)
Q Consensus 251 ~dg~v~iwd~-----~~-------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~v~~~~ 303 (312)
.|+..|+|.. .+ +++..+.....+-+..+.|+|.|+.|+..+.|+++.+.-..
T Consensus 166 ~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~ 236 (361)
T KOG1523|consen 166 TDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAA 236 (361)
T ss_pred cCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecC
Confidence 9999999953 11 12223333445668999999999999999999999877554
No 206
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.71 E-value=2e-15 Score=133.50 Aligned_cols=220 Identities=11% Similarity=0.093 Sum_probs=150.7
Q ss_pred hhhcccCcEEEEEEcCCCCeEEEEecC---CeEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEec-CCCeEEEE-
Q 047355 12 EFIQKSDRVKSVDFHPTQPWVLASLYS---GTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGS-DDKFIRVF- 86 (312)
Q Consensus 12 ~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~-~dg~i~iw- 86 (312)
.+..+...+.+.+|+|||++|+.++.+ ..|++||+.+++... +....+......|+|++++|+.++ .+|.+.+|
T Consensus 198 ~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~ 276 (429)
T PRK01742 198 IVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-VASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYV 276 (429)
T ss_pred EeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE-EecCCCccCceeECCCCCEEEEEEecCCcEEEEE
Confidence 345566789999999999999987654 369999997664322 222233345689999999888764 67776665
Q ss_pred -EccCceeeeeecccccceeEEEEecCCCEEEEEe-CCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEe
Q 047355 87 -DYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTAS-DDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASAS 164 (312)
Q Consensus 87 -d~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s-~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s 164 (312)
|+.+.. ...+..+...+....|+|+++.++..+ .++..++|++.........+ .+.. ....|+|. +..++..+
T Consensus 277 ~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpD-G~~ia~~~ 351 (429)
T PRK01742 277 MGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISAD-GKTLVMIN 351 (429)
T ss_pred EECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCC-CCEEEEEc
Confidence 555544 345556667788999999999877554 57889999875332222222 2322 34568885 46777666
Q ss_pred CCCeEEEEEcCCCcceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeC--CCCeEEEEecccccCeEEEEEeCC
Q 047355 165 LDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDY--ETKTCVQILEGHTNNVTAVCFHPE 242 (312)
Q Consensus 165 ~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~--~~~~~~~~~~~h~~~i~~l~~~~~ 242 (312)
.++ +.+||+.++........+. ..... ++|++.+++.++.++.+.+|++ .++...+.+..|.+.+...+|+|-
T Consensus 352 ~~~-i~~~Dl~~g~~~~lt~~~~--~~~~~--~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 352 GDN-VVKQDLTSGSTEVLSSTFL--DESPS--ISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred CCC-EEEEECCCCCeEEecCCCC--CCCce--ECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence 665 5569998776443222221 12233 5889999999999998888875 357778888888888999999984
No 207
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.71 E-value=7.5e-18 Score=148.99 Aligned_cols=234 Identities=24% Similarity=0.375 Sum_probs=178.8
Q ss_pred eEEecCCceeEEEEeeCCcEEEEecCCCeEEEEEccCceeeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 047355 54 SVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKN 133 (312)
Q Consensus 54 ~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~ 133 (312)
.+.+|-..|.++.|...+.+|++|++|..+++|..++..++....+|++.|+.++.+..+.+++++|.|..|++|-+...
T Consensus 185 rLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~ 264 (1113)
T KOG0644|consen 185 RLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDG 264 (1113)
T ss_pred HHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCC
Confidence 34567778999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred ceeeeEecCCccceEEEEeCCCCCCEEEEEeCCCeEEEEEcCCCcceee---ecccccceeEEEEEEcCCceEEEEEeCC
Q 047355 134 WECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFT---LDAHEKGINCIDYFITSDKVYLITGSDD 210 (312)
Q Consensus 134 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~l~sg~~d 210 (312)
.++..+.+|+..|..++|+|- .+.+.||++++||.+-...+.. .........+.. .+..++.-+++|+.|
T Consensus 265 -~pvsvLrghtgavtaiafsP~-----~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~-~~~~~~~~f~Tgs~d 337 (1113)
T KOG0644|consen 265 -APVSVLRGHTGAVTAIAFSPR-----ASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSI-LFENNGDRFLTGSRD 337 (1113)
T ss_pred -chHHHHhccccceeeeccCcc-----ccCCCCCceEeccccccccccCCCCCCcccccceeee-eccccccccccccCC
Confidence 556778999999999999984 3788999999999982211111 111111222221 234456678899999
Q ss_pred CeEEEEeCCCCeEEEEecccccCeEEEEEeCC-CcEEEEEeCCCcEEEEeCCCcceeeecccCccceEEEEEecCCCeEE
Q 047355 211 FTVKVWDYETKTCVQILEGHTNNVTAVCFHPE-LRIIITASEDGTILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVA 289 (312)
Q Consensus 211 g~i~vwd~~~~~~~~~~~~h~~~i~~l~~~~~-~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 289 (312)
+.-..|.+.... .|...+.-+.++.+ ..+.+++-.+-.+.+|++.++.+.+.+.+|...+.-+.++|....++
T Consensus 338 ~ea~n~e~~~l~------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~ 411 (1113)
T KOG0644|consen 338 GEARNHEFEQLA------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIA 411 (1113)
T ss_pred cccccchhhHhh------hhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhh
Confidence 988888764321 12111111222212 24667777788999999999999999999999999999999766655
Q ss_pred -EEecCCeEEEE
Q 047355 290 -FGCDNGTLIVK 300 (312)
Q Consensus 290 -~~~~~g~i~v~ 300 (312)
+++.||...||
T Consensus 412 msag~dgst~iw 423 (1113)
T KOG0644|consen 412 MSAGYDGSTIIW 423 (1113)
T ss_pred hhccCCCceEee
Confidence 67778887776
No 208
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.70 E-value=1.1e-15 Score=129.43 Aligned_cols=207 Identities=16% Similarity=0.253 Sum_probs=160.2
Q ss_pred CeEEEEecCCeEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEecCCCeEEEEEccCceeeeeecccccceeEEEE
Q 047355 30 PWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAV 109 (312)
Q Consensus 30 ~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~ 109 (312)
..++.++.||.+.|.+- .++..+.+..|.+.+.+..|+++|.-|+++++||.|++|.-..+ .-.++.....+|+|++|
T Consensus 76 d~~~i~s~DGkf~il~k-~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGM-LRStl~Q~~~~v~c~~W 153 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNK-SARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGM-LRSTVVQNEESIRCARW 153 (737)
T ss_pred ceEEEEcCCceEEEecc-cchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccch-HHHHHhhcCceeEEEEE
Confidence 57888999999999874 35566778889999999999999999999999999999985443 22344455678999999
Q ss_pred ecCCCEEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeCCCeEEEEEcCCCcceeeecccccc
Q 047355 110 HPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKG 189 (312)
Q Consensus 110 ~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~~~~~ 189 (312)
.|+.+.++.+.. +.+.+-.+..+.. ......|...+.++.|+|. .+++++|++|-.-++||.. +...+.-.+|+.+
T Consensus 154 ~p~S~~vl~c~g-~h~~IKpL~~n~k-~i~WkAHDGiiL~~~W~~~-s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ 229 (737)
T KOG1524|consen 154 APNSNSIVFCQG-GHISIKPLAANSK-IIRWRAHDGLVLSLSWSTQ-SNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYA 229 (737)
T ss_pred CCCCCceEEecC-CeEEEeecccccc-eeEEeccCcEEEEeecCcc-ccceeecCCceeEEeeccc-CcccccCChhccc
Confidence 999887776653 5566665554423 3457889999999999985 5899999999999999975 5566677789999
Q ss_pred eeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEecccccCeEEEEEeCCCcEEEEEeCCCcEEE
Q 047355 190 INCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITASEDGTILI 257 (312)
Q Consensus 190 v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~s~dg~v~i 257 (312)
+++++| .|+ ..++.|+.+ +++ .-....+.|..++|++||..+++|...|.+.+
T Consensus 230 ITSva~--npd-~~~~v~S~n-t~R-----------~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 230 ITSVAF--NPE-KDYLLWSYN-TAR-----------FSSPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred eeeeee--ccc-cceeeeeee-eee-----------ecCCCccceEEEEEcCCCceeeccccCceEEE
Confidence 999986 455 445555422 222 12234678999999999999999999987654
No 209
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.70 E-value=1.5e-15 Score=117.99 Aligned_cols=238 Identities=15% Similarity=0.219 Sum_probs=154.6
Q ss_pred ccCcEEEEEEcCCCCeEEEEecCCeEEEEeccCCceeeeEEecCCceeEEEEee-----CCc---EE-EEecCCCe-EEE
Q 047355 16 KSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVA-----REH---WI-VCGSDDKF-IRV 85 (312)
Q Consensus 16 ~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~---~l-~~g~~dg~-i~i 85 (312)
+...|..+..-|. ..|.+-+.|+.+.+|++....-+ ..+.-.++++-|.+ +++ ++ +.-++... +.+
T Consensus 55 g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i---~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~ 130 (323)
T KOG0322|consen 55 GRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFI---SIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHK 130 (323)
T ss_pred ccceeeceeecCC-cchhhcCCCceEEEEEccCcceE---EEeeeeccccccccceeccCCCcchhheecCCcccchhhh
Confidence 3456777776676 56888899999999998764332 22223334444432 111 11 11111000 111
Q ss_pred EEccCceeeeee----cccccceeEEEEec-CCC--EEEEEeCCCcEEEEeCCCCcee---------eeEecCCccceEE
Q 047355 86 FDYNTMASVKEF----EAHEDYIRSLAVHP-TFP--FVLTASDDKLIKLWDWEKNWEC---------TQTFEGHSHYVMQ 149 (312)
Q Consensus 86 wd~~~~~~~~~~----~~h~~~i~~~~~~~-~~~--~l~t~s~d~~v~iwd~~~~~~~---------~~~~~~~~~~v~~ 149 (312)
-|......+... ....+.+.+..+.. .++ +++.|-.+|.+.+||+...... ......|..++.+
T Consensus 131 ~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvls 210 (323)
T KOG0322|consen 131 QDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLS 210 (323)
T ss_pred hccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCccee
Confidence 111111111111 12334566665432 232 4568888999999998764221 2234578889999
Q ss_pred EEeCCCCCCEEEEEeCCCeEEEEEcCCC----cceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEE
Q 047355 150 SAFNPKDLNTFASASLDGTIQIWNMDSS----AAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQ 225 (312)
Q Consensus 150 ~~~~~~~~~~~~s~s~dg~v~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~ 225 (312)
+.|.+.. ..=++|+.+-.+..|.++.. +....+.....++..+. +-+|++.+|+++.|+.|+||+.++.+++.
T Consensus 211 ldyas~~-~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvr--IRpD~KIlATAGWD~RiRVyswrtl~pLA 287 (323)
T KOG0322|consen 211 LDYASSC-DRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVR--IRPDGKILATAGWDHRIRVYSWRTLNPLA 287 (323)
T ss_pred eeechhh-cCCcCCCccccceeeeeccccCcccccceEEecCCCccceE--EccCCcEEeecccCCcEEEEEeccCCchh
Confidence 9988643 34466777778888888643 11222222334455554 46899999999999999999999999999
Q ss_pred EecccccCeEEEEEeCCCcEEEEEeCCCcEEEEeC
Q 047355 226 ILEGHTNNVTAVCFHPELRIIITASEDGTILIWNA 260 (312)
Q Consensus 226 ~~~~h~~~i~~l~~~~~~~~l~s~s~dg~v~iwd~ 260 (312)
.++.|...|++++|+|+...+|.+|.|++|-+|++
T Consensus 288 VLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 288 VLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred hhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 99999999999999999999999999999999985
No 210
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.69 E-value=9.4e-15 Score=116.53 Aligned_cols=228 Identities=15% Similarity=0.214 Sum_probs=172.8
Q ss_pred eEEecCCceeEEEEeeCCcEEEEecCCCeEEEEEccCc---eeeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeC
Q 047355 54 SVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTM---ASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDW 130 (312)
Q Consensus 54 ~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~---~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~ 130 (312)
.+.....+|++-+|++|...++.+.+...|.||..... +..+++..|...|+.++|.|..+.|++++.|..-.+|..
T Consensus 5 ~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~ 84 (361)
T KOG1523|consen 5 VFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQ 84 (361)
T ss_pred EeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCcccccc
Confidence 34445678999999999999999999999999987654 467788999999999999999999999999999999987
Q ss_pred CCC--ceeeeEecCCccceEEEEeCCCCCCEEEEEeCCCeEEEEEcCCCcc----eeeecccccceeEEEEEEcCCceEE
Q 047355 131 EKN--WECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAA----KFTLDAHEKGINCIDYFITSDKVYL 204 (312)
Q Consensus 131 ~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~l 204 (312)
..+ ..+...+..+......+.|+|. .+.|++||....|.+|=+..... .+.-..++..|.+++| .+++.++
T Consensus 85 ~~~~~WkptlvLlRiNrAAt~V~WsP~-enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldW--hpnnVLl 161 (361)
T KOG1523|consen 85 PSGGTWKPTLVLLRINRAATCVKWSPK-ENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDW--HPNNVLL 161 (361)
T ss_pred CCCCeeccceeEEEeccceeeEeecCc-CceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeec--cCCccee
Confidence 322 2233445567778889999996 58999999999999887765431 2233455677889887 5678999
Q ss_pred EEEeCCCeEEEEeCC-----CC-------------eEEEEecccccCeEEEEEeCCCcEEEEEeCCCcEEEEeCCCcc-e
Q 047355 205 ITGSDDFTVKVWDYE-----TK-------------TCVQILEGHTNNVTAVCFHPELRIIITASEDGTILIWNATTFR-L 265 (312)
Q Consensus 205 ~sg~~dg~i~vwd~~-----~~-------------~~~~~~~~h~~~i~~l~~~~~~~~l~s~s~dg~v~iwd~~~~~-~ 265 (312)
++|+.|++.+||... +. ++...+....+.|+.+.|+|.|..|+-.+.|..+.+=|..... .
T Consensus 162 aaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~ 241 (361)
T KOG1523|consen 162 AAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSER 241 (361)
T ss_pred cccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchh
Confidence 999999999999642 11 1122232346789999999999999999999999999976543 3
Q ss_pred eeecccCccceEEEEEecC
Q 047355 266 QNTLSSGLERVWSIGYKKG 284 (312)
Q Consensus 266 ~~~~~~~~~~v~~~~~~~~ 284 (312)
..++....-+..++.|-.+
T Consensus 242 v~~~~~~~lP~ls~~~ise 260 (361)
T KOG1523|consen 242 VQSVATAQLPLLSVSWISE 260 (361)
T ss_pred ccchhhccCCceeeEeecC
Confidence 3333333345556666544
No 211
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.68 E-value=1.6e-16 Score=132.15 Aligned_cols=234 Identities=13% Similarity=0.169 Sum_probs=179.7
Q ss_pred ceeEEEEeeCCcEEEEecCCCeEEEEEccCceeeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEe
Q 047355 61 PVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTF 140 (312)
Q Consensus 61 ~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~ 140 (312)
.=..+.|..+|..|+.|+.-|.|..+|+.++....++.. ...|.++.|-...++++.+- ...+.|||-... .++.+
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~~Gt--ElHCl 206 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVAQ-KKYVYVYDNNGT--ELHCL 206 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhhh-hceEEEecCCCc--EEeeh
Confidence 345778899999999999999999999999887766643 34688899988888877655 578999995432 22333
Q ss_pred cCCccceEEEEeCCCCCCEEEEEeCCCeEEEEEcCCCcceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCC
Q 047355 141 EGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYET 220 (312)
Q Consensus 141 ~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~ 220 (312)
..| ..+..+.|-|. .-+|++++..|.++.-|+.+++.+..+......+..+. ..|-+..+-.|...|+|.+|....
T Consensus 207 k~~-~~v~rLeFLPy-HfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~--qNP~NaVih~GhsnGtVSlWSP~s 282 (545)
T KOG1272|consen 207 KRH-IRVARLEFLPY-HFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMK--QNPYNAVIHLGHSNGTVSLWSPNS 282 (545)
T ss_pred hhc-Cchhhhcccch-hheeeecccCCceEEEeechhhhhHHHHccCCccchhh--cCCccceEEEcCCCceEEecCCCC
Confidence 322 35677888884 46888999999999999999988766655555555443 456677788999999999999998
Q ss_pred CeEEEEecccccCeEEEEEeCCCcEEEEEeCCCcEEEEeCCCcceeeecccCccceEEEEEecCCCeEEEEecCCeEEEE
Q 047355 221 KTCVQILEGHTNNVTAVCFHPELRIIITASEDGTILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGCDNGTLIVK 300 (312)
Q Consensus 221 ~~~~~~~~~h~~~i~~l~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~v~ 300 (312)
.+++..+-.|.++|.+|+++++|+++||.+.|..++|||++.+..+++... .-....++||..| +.+.+....+.||
T Consensus 283 kePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg--lLA~~~G~~v~iw 359 (545)
T KOG1272|consen 283 KEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG--LLALSYGDHVQIW 359 (545)
T ss_pred cchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccccc--ceeeecCCeeeee
Confidence 888888888999999999999999999999999999999998876666555 3445567777664 3344555567777
Q ss_pred eccCC
Q 047355 301 IGNSS 305 (312)
Q Consensus 301 ~~~~~ 305 (312)
-...+
T Consensus 360 ~d~~~ 364 (545)
T KOG1272|consen 360 KDALK 364 (545)
T ss_pred hhhhc
Confidence 65544
No 212
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.66 E-value=7e-14 Score=128.91 Aligned_cols=251 Identities=16% Similarity=0.214 Sum_probs=169.4
Q ss_pred hhhhcccCcEEEEEEcCC-CCeEEEEecCCeEEEEeccCC-------ceeeeEEecCCceeEEEEeeCCcEEEEecCCCe
Q 047355 11 KEFIQKSDRVKSVDFHPT-QPWVLASLYSGTVCIWNYHSQ-------TTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKF 82 (312)
Q Consensus 11 ~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~v~iw~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~ 82 (312)
.++..|+..|..++.++. ++++++|+.||+|++||..+. +...++......+..+.+...++.++.|+.||.
T Consensus 1042 AhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~ 1121 (1431)
T KOG1240|consen 1042 AHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGS 1121 (1431)
T ss_pred ehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCe
Confidence 346678888889998865 499999999999999998542 122234445678889999999999999999999
Q ss_pred EEEEEccCcee-------eeeeccc-ccceeEEE-Ee-cCCC-EEEEEeCCCcEEEEeCCCCcee-eeEecCCccceEEE
Q 047355 83 IRVFDYNTMAS-------VKEFEAH-EDYIRSLA-VH-PTFP-FVLTASDDKLIKLWDWEKNWEC-TQTFEGHSHYVMQS 150 (312)
Q Consensus 83 i~iwd~~~~~~-------~~~~~~h-~~~i~~~~-~~-~~~~-~l~t~s~d~~v~iwd~~~~~~~-~~~~~~~~~~v~~~ 150 (312)
|++.+++-... ......+ .+.+.+|. +. ..+. .++.+..-+.+..||++..... ........+.|.++
T Consensus 1122 v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi 1201 (1431)
T KOG1240|consen 1122 VRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSI 1201 (1431)
T ss_pred EEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEE
Confidence 99998875211 1111112 23344442 22 1233 6788888899999998653221 11233445788899
Q ss_pred EeCCCCCCEEEEEeCCCeEEEEEcCCCcceeeec-ccccceeEEEEEEcCC--ceEEEEEe-CCCeEEEEeCCCCeEEEE
Q 047355 151 AFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLD-AHEKGINCIDYFITSD--KVYLITGS-DDFTVKVWDYETKTCVQI 226 (312)
Q Consensus 151 ~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~--~~~l~sg~-~dg~i~vwd~~~~~~~~~ 226 (312)
+.+|. .+.++.|+..|.+.+||++-..++.... ++..++.-+...+... ...+.+|+ ..+.|.+|+++++.+..+
T Consensus 1202 ~idp~-~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~v 1280 (1431)
T KOG1240|consen 1202 VIDPW-CNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTV 1280 (1431)
T ss_pred EecCC-ceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEE
Confidence 99985 4799999999999999998766554322 2335555555444433 33344444 578899999998866555
Q ss_pred eccc-------------------ccCeEEEEEeCCCcEEEEEeCCCcEEEEeCCC
Q 047355 227 LEGH-------------------TNNVTAVCFHPELRIIITASEDGTILIWNATT 262 (312)
Q Consensus 227 ~~~h-------------------~~~i~~l~~~~~~~~l~s~s~dg~v~iwd~~~ 262 (312)
+..- .-......+...+..+.+|+.|..||.||...
T Consensus 1281 l~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~ 1335 (1431)
T KOG1240|consen 1281 LWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTR 1335 (1431)
T ss_pred EEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCC
Confidence 4322 11122334444567899999999999999854
No 213
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=4e-14 Score=115.93 Aligned_cols=241 Identities=15% Similarity=0.246 Sum_probs=174.2
Q ss_pred cccCcEEEEEEcCCCCeEEEEecCCeEEEEeccCCceeeeEEecC--CceeEEEEeeCCcEEEEecCCCeEEEEEccCce
Q 047355 15 QKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTD--SPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMA 92 (312)
Q Consensus 15 ~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~ 92 (312)
.|...|.+++|+...++|++|+.+++|...|+++.+.+..+.... +.|..+.-+|..+.+++.+.++.|.+||.....
T Consensus 103 ~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~ 182 (609)
T KOG4227|consen 103 PHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQ 182 (609)
T ss_pred ccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCC
Confidence 355899999999999999999999999999999888777665433 478888888988999999999999999986543
Q ss_pred -eee--eecccccceeEEEEecCCC-EEEEEeCCCcEEEEeCCCCceeeeEec---CC---ccceEEEEeCCCCCCEEEE
Q 047355 93 -SVK--EFEAHEDYIRSLAVHPTFP-FVLTASDDKLIKLWDWEKNWECTQTFE---GH---SHYVMQSAFNPKDLNTFAS 162 (312)
Q Consensus 93 -~~~--~~~~h~~~i~~~~~~~~~~-~l~t~s~d~~v~iwd~~~~~~~~~~~~---~~---~~~v~~~~~~~~~~~~~~s 162 (312)
... ..........++.|+|..+ +|++.+..+-+-+||.+....++.... +. ...-+.+.|+|. ++.|++
T Consensus 183 ~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~-G~Q~ms 261 (609)
T KOG4227|consen 183 NPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPS-GNQFMS 261 (609)
T ss_pred CCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCC-CCeehh
Confidence 211 1223345567889999764 667889999999999876544332221 11 122356789985 466666
Q ss_pred EeCCCeEEEEEcCCCcceeeeccccc-------ceeEEEEEEcCCceEEEEEeCCCeEEEEeCCC----C----------
Q 047355 163 ASLDGTIQIWNMDSSAAKFTLDAHEK-------GINCIDYFITSDKVYLITGSDDFTVKVWDYET----K---------- 221 (312)
Q Consensus 163 ~s~dg~v~iwd~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~----~---------- 221 (312)
--....-.+||+-+..+......|.. .+.+++|. +...+++|+.+-.|++|.+.. +
T Consensus 262 iRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~---~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~ 338 (609)
T KOG4227|consen 262 IRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFI---DDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEE 338 (609)
T ss_pred hhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeee---cceeeeccCcccceEEEecCCCccccCccccCcchh
Confidence 65555567788876544322223322 12333332 335599999999999997621 1
Q ss_pred ---------eEEEEecccccCeEEEEEeCCCcEEEEEeCCCcEEEEe
Q 047355 222 ---------TCVQILEGHTNNVTAVCFHPELRIIITASEDGTILIWN 259 (312)
Q Consensus 222 ---------~~~~~~~~h~~~i~~l~~~~~~~~l~s~s~dg~v~iwd 259 (312)
+.+..+++|.+-++.+.|+|...+|++.+....++||.
T Consensus 339 ~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 339 EMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWS 385 (609)
T ss_pred hCchhheecceeEEEecccccccceeecCCcceEeccchhhheeccc
Confidence 12346789999999999999999999999999999995
No 214
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=5.3e-14 Score=120.32 Aligned_cols=246 Identities=15% Similarity=0.278 Sum_probs=174.4
Q ss_pred cccCcEEEEEEcCCCCeEE-EEecCCeEEEEeccCCcee---------eeEEecCC---------ceeEEEEeeC-----
Q 047355 15 QKSDRVKSVDFHPTQPWVL-ASLYSGTVCIWNYHSQTTE---------KSVKVTDS---------PVRTAKFVAR----- 70 (312)
Q Consensus 15 ~~~~~i~~~~~~~~~~~l~-~~~~dg~v~iw~~~~~~~~---------~~~~~~~~---------~v~~~~~~~~----- 70 (312)
.+...-+.|..+|||++++ +|...-.|++||+...... ..|..... .-+.+.|++.
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy 128 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY 128 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence 4556677888899999866 5667889999998653211 01111000 0111222211
Q ss_pred ----------------CcEEEEecCCCeEEEEEccCceeeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCc
Q 047355 71 ----------------EHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNW 134 (312)
Q Consensus 71 ----------------~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~ 134 (312)
.--|+.++....|+-++++.+..+..++.-...++++.+++...+|++|+.+|.|.+||.+...
T Consensus 129 ~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ks 208 (703)
T KOG2321|consen 129 RTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKS 208 (703)
T ss_pred eeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhh
Confidence 1124555555678888999998888888888999999999999999999999999999976542
Q ss_pred eeee-----EecCC-----ccceEEEEeCCCCCCEEEEEeCCCeEEEEEcCCCcceeee-cccccceeEEEEEEcCCceE
Q 047355 135 ECTQ-----TFEGH-----SHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTL-DAHEKGINCIDYFITSDKVY 203 (312)
Q Consensus 135 ~~~~-----~~~~~-----~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~ 203 (312)
.+.. ....| ...|..+.|+. ++-.+++|+.+|.+.|||+++.++...- .....++..++|....++..
T Consensus 209 rv~~l~~~~~v~s~pg~~~~~svTal~F~d-~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~ 287 (703)
T KOG2321|consen 209 RVGTLDAASSVNSHPGGDAAPSVTALKFRD-DGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNK 287 (703)
T ss_pred hheeeecccccCCCccccccCcceEEEecC-CceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCce
Confidence 2211 11112 23478888985 4678999999999999999998776543 23345677777765544455
Q ss_pred EEEEeCCCeEEEEeCCCCeEEEEecccccCeEEEEEeCCCcEEEEEeCCCcEEEEeCCCc
Q 047355 204 LITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITASEDGTILIWNATTF 263 (312)
Q Consensus 204 l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~s~dg~v~iwd~~~~ 263 (312)
+++. ....+++||-.+++....+.. ...++.+|+-|++.+++++-.+..+..+=++..
T Consensus 288 v~S~-Dk~~~kiWd~~~Gk~~asiEp-t~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~L 345 (703)
T KOG2321|consen 288 VVSM-DKRILKIWDECTGKPMASIEP-TSDLNDFCFVPGSGMFFTANESSKMHTYYIPSL 345 (703)
T ss_pred EEec-chHHhhhcccccCCceeeccc-cCCcCceeeecCCceEEEecCCCcceeEEcccc
Confidence 5544 567899999999998887774 455999999999999999999998888877654
No 215
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.64 E-value=1.4e-13 Score=127.06 Aligned_cols=256 Identities=14% Similarity=0.157 Sum_probs=172.6
Q ss_pred EeccCCceeeeEEecCCceeEEEEeeC-CcEEEEecCCCeEEEEEccCce-------eeeeecccccceeEEEEecCCCE
Q 047355 44 WNYHSQTTEKSVKVTDSPVRTAKFVAR-EHWIVCGSDDKFIRVFDYNTMA-------SVKEFEAHEDYIRSLAVHPTFPF 115 (312)
Q Consensus 44 w~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~g~~dg~i~iwd~~~~~-------~~~~~~~h~~~i~~~~~~~~~~~ 115 (312)
|+.. +..+..+..|...+..++.++. +.++++|+.||+|++|+..... ...++..-...+.++..-+.+..
T Consensus 1034 W~p~-G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNPR-GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred CCcc-ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence 5543 4566677777777777777665 4899999999999999976432 22334334567888888888999
Q ss_pred EEEEeCCCcEEEEeCCCCcee------eeEecCC-ccceEEE-EeCCCCCC-EEEEEeCCCeEEEEEcCCCcceeeecc-
Q 047355 116 VLTASDDKLIKLWDWEKNWEC------TQTFEGH-SHYVMQS-AFNPKDLN-TFASASLDGTIQIWNMDSSAAKFTLDA- 185 (312)
Q Consensus 116 l~t~s~d~~v~iwd~~~~~~~------~~~~~~~-~~~v~~~-~~~~~~~~-~~~s~s~dg~v~iwd~~~~~~~~~~~~- 185 (312)
+|.++.||.|++.++...... ......+ ...+.++ +|...... .++.+...+.|..||.+......+++.
T Consensus 1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~ 1192 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQ 1192 (1431)
T ss_pred EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcC
Confidence 999999999999998652111 0111111 1222222 33322333 788888999999999998766554433
Q ss_pred -cccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEec-ccccCeEEEEEeCCCc---E-EEEEe-CCCcEEEE
Q 047355 186 -HEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILE-GHTNNVTAVCFHPELR---I-IITAS-EDGTILIW 258 (312)
Q Consensus 186 -~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~-~h~~~i~~l~~~~~~~---~-l~s~s-~dg~v~iw 258 (312)
..+.|++++ .++.+.+++.|+..|.+.+||++=+.++.... ++..+|+.+..+|-.+ . +.+++ ..+.|-+|
T Consensus 1193 ~~hG~vTSi~--idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~w 1270 (1431)
T KOG1240|consen 1193 LRHGLVTSIV--IDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTW 1270 (1431)
T ss_pred ccccceeEEE--ecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeee
Confidence 234566665 57888899999999999999998776665543 4567899888887433 3 44444 57899999
Q ss_pred eCCCcceeeecccC-------------------ccceEEEEEecCCCeEEEEecCCeEEEEec
Q 047355 259 NATTFRLQNTLSSG-------------------LERVWSIGYKKGSNQVAFGCDNGTLIVKIG 302 (312)
Q Consensus 259 d~~~~~~~~~~~~~-------------------~~~v~~~~~~~~~~~l~~~~~~g~i~v~~~ 302 (312)
+..++....++-.. .......++.-.+..+.+|+.|..|+.|-.
T Consensus 1271 n~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~ 1333 (1431)
T KOG1240|consen 1271 NMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDP 1333 (1431)
T ss_pred ecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccC
Confidence 99886443333222 112344455556677889999999986643
No 216
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=3.2e-15 Score=127.03 Aligned_cols=167 Identities=27% Similarity=0.345 Sum_probs=132.9
Q ss_pred eeeEEecCCceeEEEEeeCCcEEEEecCCCeEEEEEccCceeeeee-cccccceeEEEEecC--CCEEEEEeCCCcEEEE
Q 047355 52 EKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEF-EAHEDYIRSLAVHPT--FPFVLTASDDKLIKLW 128 (312)
Q Consensus 52 ~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~-~~h~~~i~~~~~~~~--~~~l~t~s~d~~v~iw 128 (312)
.+.+.+|.+.|+++.|+.+|.+|++|+.|-.+.+||.-..+.++.+ .+|...|.++.|-|. ...+++|..|..|+++
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 4567889999999999999999999999999999998877776665 689999999999884 4678999999999999
Q ss_pred eCCC---------CceeeeEecCCccceEEEEeCCCCCCEEEEEeCCCeEEEEEcCCCcc-eeeecc---------cccc
Q 047355 129 DWEK---------NWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAA-KFTLDA---------HEKG 189 (312)
Q Consensus 129 d~~~---------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~-~~~~~~---------~~~~ 189 (312)
|+.. ..+....+..|...|..++-.|.+++.|.++++||+++-||++.... ...... ..-.
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lie 202 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIE 202 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhe
Confidence 9874 22344567788889999998898889999999999999999986321 111111 1123
Q ss_pred eeEEEEEEcCCceEEEEEeCCCeEEEEeCC
Q 047355 190 INCIDYFITSDKVYLITGSDDFTVKVWDYE 219 (312)
Q Consensus 190 v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~ 219 (312)
..|+.+.+ .+..+|+.|+.|-..++||.+
T Consensus 203 lk~ltisp-~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 203 LKCLTISP-SRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred eeeeeecC-CCCceEEecCCCchhhhhhhh
Confidence 45666543 356789999999999999964
No 217
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=1.8e-13 Score=120.95 Aligned_cols=237 Identities=17% Similarity=0.104 Sum_probs=147.6
Q ss_pred CeEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEecC---CCeEEEEEccCceeeeeecccccceeEEEEecCCCE
Q 047355 39 GTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSD---DKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPF 115 (312)
Q Consensus 39 g~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~---dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~ 115 (312)
..|.++|.+... .+.+..+...+...+|+|+++.|+..+. ...|.+||+.+++.. .+....+.+...+|+|+++.
T Consensus 176 ~~L~~~D~dG~~-~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~ 253 (427)
T PRK02889 176 YQLQISDADGQN-AQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRR-VVANFKGSNSAPAWSPDGRT 253 (427)
T ss_pred cEEEEECCCCCC-ceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEE-EeecCCCCccceEECCCCCE
Confidence 356677765433 3334445567888999999999887653 246999999877543 23333345678899999988
Q ss_pred EE-EEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEe-CCCeEEEEEcC--CCcceeeeccccccee
Q 047355 116 VL-TASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASAS-LDGTIQIWNMD--SSAAKFTLDAHEKGIN 191 (312)
Q Consensus 116 l~-t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s-~dg~v~iwd~~--~~~~~~~~~~~~~~v~ 191 (312)
|+ +.+.++...+|.+.........+..+........|+|.+ ..++..+ .++...+|.++ ++... .+..+.....
T Consensus 254 la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG-~~l~f~s~~~g~~~Iy~~~~~~g~~~-~lt~~g~~~~ 331 (427)
T PRK02889 254 LAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDG-RSIYFTSDRGGAPQIYRMPASGGAAQ-RVTFTGSYNT 331 (427)
T ss_pred EEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCC-CEEEEEecCCCCcEEEEEECCCCceE-EEecCCCCcC
Confidence 76 567788877776532222233444444445567799854 5555444 45666777653 33322 2211111122
Q ss_pred EEEEEEcCCceEEEEEeCCC---eEEEEeCCCCeEEEEecccccCeEEEEEeCCCcEEEEEeCCC---cEEEEeCCCcce
Q 047355 192 CIDYFITSDKVYLITGSDDF---TVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITASEDG---TILIWNATTFRL 265 (312)
Q Consensus 192 ~~~~~~~~~~~~l~sg~~dg---~i~vwd~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~s~dg---~v~iwd~~~~~~ 265 (312)
.. .++|+|.+++..+.++ .|.+||+.+++...... ........|+|+++.|+..+.++ .+.+.+. +++.
T Consensus 332 ~~--~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~--~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~ 406 (427)
T PRK02889 332 SP--RISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTD--TTRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRI 406 (427)
T ss_pred ce--EECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccC--CCCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCc
Confidence 23 3578999888766554 69999998776544332 22346789999999888777554 2444455 4555
Q ss_pred eeecccCccceEEEEEecC
Q 047355 266 QNTLSSGLERVWSIGYKKG 284 (312)
Q Consensus 266 ~~~~~~~~~~v~~~~~~~~ 284 (312)
...+..+.+.+...+|+|-
T Consensus 407 ~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 407 KQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred eEEeecCCCCCCCCccCCC
Confidence 5555555566777778764
No 218
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.61 E-value=9.8e-13 Score=105.64 Aligned_cols=278 Identities=13% Similarity=0.229 Sum_probs=185.9
Q ss_pred cCcEEEEEEcCCCCeEEEE-ecCCeEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEE-EecCCCeEEEEEccCceee
Q 047355 17 SDRVKSVDFHPTQPWVLAS-LYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIV-CGSDDKFIRVFDYNTMASV 94 (312)
Q Consensus 17 ~~~i~~~~~~~~~~~l~~~-~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~g~~dg~i~iwd~~~~~~~ 94 (312)
-+.|.-+.|..|.-+++.+ ..|+.|.+|++...+--..+.....++..+.|+|+|+.|+ +..-|-.|.+|.+.+.+..
T Consensus 48 ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~ 127 (447)
T KOG4497|consen 48 LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY 127 (447)
T ss_pred HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeE
Confidence 4678889999888877765 5678999999988777778888888999999999996655 5566889999999886543
Q ss_pred eeecccccceeEEEEecCCCEEEEEeC-C-----------------------------------CcEEEEeCCCCceeee
Q 047355 95 KEFEAHEDYIRSLAVHPTFPFVLTASD-D-----------------------------------KLIKLWDWEKNWECTQ 138 (312)
Q Consensus 95 ~~~~~h~~~i~~~~~~~~~~~l~t~s~-d-----------------------------------~~v~iwd~~~~~~~~~ 138 (312)
. ++-....+..++|+|++++.+..++ | ..+-+||.--... +.
T Consensus 128 ~-~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leyk-v~ 205 (447)
T KOG4497|consen 128 L-LPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYK-VY 205 (447)
T ss_pred E-ecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhhe-ee
Confidence 2 2222334678889999988776654 2 1122222110000 00
Q ss_pred EecCCccceEEEEeCCCCCCEEEEEeCCCeEEEEEcCC-------------------------Ccce-------------
Q 047355 139 TFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDS-------------------------SAAK------------- 180 (312)
Q Consensus 139 ~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~-------------------------~~~~------------- 180 (312)
.++ -.-.+..+.|+|. +++++.|+.|+.+|+.+--+ .+..
T Consensus 206 aYe-~~lG~k~v~wsP~-~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~ 283 (447)
T KOG4497|consen 206 AYE-RGLGLKFVEWSPC-NQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTD 283 (447)
T ss_pred eee-eccceeEEEeccc-cceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCc
Confidence 011 1123566789985 48999999999998855210 0000
Q ss_pred ----------------------eeec------ccccceeEEEEEEcCCceEEEEEeCC--CeEEEEeCCCCeEEEEeccc
Q 047355 181 ----------------------FTLD------AHEKGINCIDYFITSDKVYLITGSDD--FTVKVWDYETKTCVQILEGH 230 (312)
Q Consensus 181 ----------------------~~~~------~~~~~v~~~~~~~~~~~~~l~sg~~d--g~i~vwd~~~~~~~~~~~~h 230 (312)
..+. ....++.-++ +++|..|+++-.+. +-+-+||++..+....+. .
T Consensus 284 ~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~la--fs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Q 360 (447)
T KOG4497|consen 284 LEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLA--FSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-Q 360 (447)
T ss_pred cccCccccchhhhhhhhcceeeecccCCCCCCCcccccceee--ecCCceEEeeecCCCCceEEEEechhhhhhhhhh-h
Confidence 0000 0111233333 46788888887543 468899998776554444 4
Q ss_pred ccCeEEEEEeCCCcEEEEEeCCCcEEEEeCCCcceeeecccCccceEEEEEecCCCeEEEEecCCeEEEEec
Q 047355 231 TNNVTAVCFHPELRIIITASEDGTILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGCDNGTLIVKIG 302 (312)
Q Consensus 231 ~~~i~~l~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~v~~~ 302 (312)
..+|+...|+|..+.|+.+....++++|..+...... .....-.+..+.|..+|..|+..+.|.-..--+.
T Consensus 361 k~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~-vP~~GF~i~~l~W~~~g~~i~l~~kDafc~a~ve 431 (447)
T KOG4497|consen 361 KHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVG-VPKKGFNIQKLQWLQPGEFIVLCGKDAFCVAIVE 431 (447)
T ss_pred ccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEe-cCCCCceeeeEEecCCCcEEEEEcCCceEEEEec
Confidence 6689999999998888888888889999876533322 2333367899999999999999999886544333
No 219
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.59 E-value=5.2e-13 Score=107.77 Aligned_cols=280 Identities=19% Similarity=0.298 Sum_probs=186.8
Q ss_pred cccCcEEEEEEcCCCCeEEEEecCCeEEEEeccCCc-----eeeeEEecC------------CceeEEEEeeCC--cEEE
Q 047355 15 QKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQT-----TEKSVKVTD------------SPVRTAKFVARE--HWIV 75 (312)
Q Consensus 15 ~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~-----~~~~~~~~~------------~~v~~~~~~~~~--~~l~ 75 (312)
...+-|.++.|+.+|.+|++|..+|.|.++.-.... ....++.|+ ..|..+.|.+++ ..++
T Consensus 23 teadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL 102 (433)
T KOG1354|consen 23 TEADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL 102 (433)
T ss_pred chhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence 456789999999999999999999999999643222 122333332 357778888764 3566
Q ss_pred EecCCCeEEEEEccCceee-----------------------------------eee-cccccceeEEEEecCCCEEEEE
Q 047355 76 CGSDDKFIRVFDYNTMASV-----------------------------------KEF-EAHEDYIRSLAVHPTFPFVLTA 119 (312)
Q Consensus 76 ~g~~dg~i~iwd~~~~~~~-----------------------------------~~~-~~h~~~i~~~~~~~~~~~l~t~ 119 (312)
...+|.+|++|-+...... +.+ .+|+--|+++.++.+...++++
T Consensus 103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA 182 (433)
T KOG1354|consen 103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA 182 (433)
T ss_pred EecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec
Confidence 7789999999976421100 011 2577789999999999888765
Q ss_pred eCCCcEEEEeCCCCceeeeEe-------cCCccceEEEEeCCCCCCEEEEEeCCCeEEEEEcCCCcce----eeecccc-
Q 047355 120 SDDKLIKLWDWEKNWECTQTF-------EGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAK----FTLDAHE- 187 (312)
Q Consensus 120 s~d~~v~iwd~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~----~~~~~~~- 187 (312)
. |=.|.+|++.-..+..... +.-+.-+.+..|+|..-+.|+-.+.-|+|++.|++....- ..++...
T Consensus 183 D-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEeped 261 (433)
T KOG1354|consen 183 D-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPED 261 (433)
T ss_pred c-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccC
Confidence 4 6789999876433322211 2223456778899988889999999999999999853210 1111111
Q ss_pred -----------cceeEEEEEEcCCceEEEEEeCCCeEEEEeC-CCCeEEEEecccc------------cCe---EEEEEe
Q 047355 188 -----------KGINCIDYFITSDKVYLITGSDDFTVKVWDY-ETKTCVQILEGHT------------NNV---TAVCFH 240 (312)
Q Consensus 188 -----------~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~-~~~~~~~~~~~h~------------~~i---~~l~~~ 240 (312)
..|.. +-++.+|+|+++-.. -+|++||+ ...+++.+++-|. +.| ..++|+
T Consensus 262 p~~rsffseiIsSISD--vKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~s 338 (433)
T KOG1354|consen 262 PSSRSFFSEIISSISD--VKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWS 338 (433)
T ss_pred CcchhhHHHHhhhhhc--eEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEc
Confidence 12333 345778999988643 47999998 4556666665552 222 357899
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCcce-----ee--------------ecc-cCc--------------cceEEEEEecCCC
Q 047355 241 PELRIIITASEDGTILIWNATTFRL-----QN--------------TLS-SGL--------------ERVWSIGYKKGSN 286 (312)
Q Consensus 241 ~~~~~l~s~s~dg~v~iwd~~~~~~-----~~--------------~~~-~~~--------------~~v~~~~~~~~~~ 286 (312)
.++..++||+.....++++...+.. .. ... +.. ..+...+|+|..+
T Consensus 339 g~~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~k~~~V~~~g~r~~~~~~vd~ldf~kkilh~aWhp~en 418 (433)
T KOG1354|consen 339 GNDSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKVLKLRLVSSSGKRKRDEISVDALDFRKKILHTAWHPKEN 418 (433)
T ss_pred CCcceEecccccceEEEecCCCCcceeecccccccCCcccccccceeeecCCCccccccccchhhhhhHHHhhccCCccc
Confidence 9999999999999999999543211 00 000 011 1245667899999
Q ss_pred eEEEEecCCeEE
Q 047355 287 QVAFGCDNGTLI 298 (312)
Q Consensus 287 ~l~~~~~~g~i~ 298 (312)
.||.+..+..-+
T Consensus 419 ~ia~aatnnlyi 430 (433)
T KOG1354|consen 419 SIAVAATNNLYI 430 (433)
T ss_pred eeeeeecCceEE
Confidence 999888877544
No 220
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=2.1e-12 Score=114.15 Aligned_cols=234 Identities=12% Similarity=0.100 Sum_probs=150.2
Q ss_pred eEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEec---CCCeEEEEEccCceeeeeecccccceeEEEEecCCCEE
Q 047355 40 TVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGS---DDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFV 116 (312)
Q Consensus 40 ~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~---~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~l 116 (312)
.|.+||.+.... +.+......+....|+|+++.|+..+ .+..|.+|++.+++.. .+......+....|+|+++.|
T Consensus 180 ~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~-~l~~~~~~~~~~~~SPDG~~L 257 (429)
T PRK03629 180 ELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKL 257 (429)
T ss_pred eEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE-EccCCCCCcCCeEECCCCCEE
Confidence 688888876543 33444556788999999999888643 3457999999876532 222223335568999999988
Q ss_pred EEE-eCCC--cEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeC-CCeEEEE--EcCCCcceeeecccccce
Q 047355 117 LTA-SDDK--LIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASL-DGTIQIW--NMDSSAAKFTLDAHEKGI 190 (312)
Q Consensus 117 ~t~-s~d~--~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~-dg~v~iw--d~~~~~~~~~~~~~~~~v 190 (312)
+.. +.++ .|.+||+.... . ..+..+...+....|+|.+ ..++..+. ++..++| |+.++... .+..+....
T Consensus 258 a~~~~~~g~~~I~~~d~~tg~-~-~~lt~~~~~~~~~~wSPDG-~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~~~ 333 (429)
T PRK03629 258 AFALSKTGSLNLYVMDLASGQ-I-RQVTDGRSNNTEPTWFPDS-QNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGSQN 333 (429)
T ss_pred EEEEcCCCCcEEEEEECCCCC-E-EEccCCCCCcCceEECCCC-CEEEEEeCCCCCceEEEEECCCCCeE-EeecCCCCc
Confidence 754 4455 48888886542 2 2333333456678899854 55655554 4444444 66554432 232222222
Q ss_pred eEEEEEEcCCceEEEEEeCC---CeEEEEeCCCCeEEEEecccccCeEEEEEeCCCcEEEEEeCCCc---EEEEeCCCcc
Q 047355 191 NCIDYFITSDKVYLITGSDD---FTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITASEDGT---ILIWNATTFR 264 (312)
Q Consensus 191 ~~~~~~~~~~~~~l~sg~~d---g~i~vwd~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~s~dg~---v~iwd~~~~~ 264 (312)
... .++|||.+++..+.+ ..|.+||+.+++.......+ ......|+||+++|+..+.++. +.++++ +++
T Consensus 334 ~~~--~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~--~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~ 408 (429)
T PRK03629 334 QDA--DVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDTF--LDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DGR 408 (429)
T ss_pred cCE--EECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCC
Confidence 333 357888888765543 35889999887654333222 2346789999999999988765 677776 455
Q ss_pred eeeecccCccceEEEEEecC
Q 047355 265 LQNTLSSGLERVWSIGYKKG 284 (312)
Q Consensus 265 ~~~~~~~~~~~v~~~~~~~~ 284 (312)
....+..+...+...+|+|-
T Consensus 409 ~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 409 FKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred CeEECccCCCCcCCcccCCC
Confidence 55666667777888888873
No 221
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=7.3e-13 Score=117.08 Aligned_cols=219 Identities=10% Similarity=0.043 Sum_probs=142.7
Q ss_pred hhcccCcEEEEEEcCCCCeEEEEec---CCeEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEe-cCCC--eEEEE
Q 047355 13 FIQKSDRVKSVDFHPTQPWVLASLY---SGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCG-SDDK--FIRVF 86 (312)
Q Consensus 13 ~~~~~~~i~~~~~~~~~~~l~~~~~---dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g-~~dg--~i~iw 86 (312)
+..+.+.+.+.+|+|||+.|+..+. +..|.+|++.+++... +...........|+|+++.|+.. +.+| .|.+|
T Consensus 194 lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~ 272 (429)
T PRK03629 194 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVM 272 (429)
T ss_pred eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEE
Confidence 3445568899999999999886543 3468899988765433 22223345568999999988754 4444 58889
Q ss_pred EccCceeeeeecccccceeEEEEecCCCEEEEEeC-CCcEEEE--eCCCCceeeeEecCCccceEEEEeCCCCCCEEEEE
Q 047355 87 DYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASD-DKLIKLW--DWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASA 163 (312)
Q Consensus 87 d~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~-d~~v~iw--d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~ 163 (312)
|++++... .+..+...+....|+|+++.|+..+. ++...+| |..... ...+..+........|+|.+ ..++..
T Consensus 273 d~~tg~~~-~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~--~~~lt~~~~~~~~~~~SpDG-~~Ia~~ 348 (429)
T PRK03629 273 DLASGQIR-QVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA--PQRITWEGSQNQDADVSSDG-KFMVMV 348 (429)
T ss_pred ECCCCCEE-EccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC--eEEeecCCCCccCEEECCCC-CEEEEE
Confidence 99876543 34444456788999999998877665 4555666 444332 22233233344557788854 555554
Q ss_pred eC-C--CeEEEEEcCCCcceeeecccccceeEEEEEEcCCceEEEEEeCCCe---EEEEeCCCCeEEEEecccccCeEEE
Q 047355 164 SL-D--GTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFT---VKVWDYETKTCVQILEGHTNNVTAV 237 (312)
Q Consensus 164 s~-d--g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~---i~vwd~~~~~~~~~~~~h~~~i~~l 237 (312)
+. + ..|.+||+.++... .+... ...... .++|||.+++..+.++. +.++++. +.....+.+|.+.+...
T Consensus 349 ~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p--~~SpDG~~i~~~s~~~~~~~l~~~~~~-G~~~~~l~~~~~~~~~p 423 (429)
T PRK03629 349 SSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETP--SIAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFP 423 (429)
T ss_pred EccCCCceEEEEECCCCCeE-EeCCC-CCCCCc--eECCCCCEEEEEEcCCCceEEEEEECC-CCCeEECccCCCCcCCc
Confidence 43 3 35888999877543 23221 111222 35789999998887764 6677774 55556677788889999
Q ss_pred EEeC
Q 047355 238 CFHP 241 (312)
Q Consensus 238 ~~~~ 241 (312)
+|+|
T Consensus 424 ~Wsp 427 (429)
T PRK03629 424 AWSP 427 (429)
T ss_pred ccCC
Confidence 9987
No 222
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.57 E-value=1.3e-13 Score=116.99 Aligned_cols=197 Identities=20% Similarity=0.304 Sum_probs=134.7
Q ss_pred cCCCCeEEEEecCCeEEEEeccCCceeeeEE----ecCCceeEEEEeeCCc-EEEEecCCCeEEEEEccCceeeeeeccc
Q 047355 26 HPTQPWVLASLYSGTVCIWNYHSQTTEKSVK----VTDSPVRTAKFVAREH-WIVCGSDDKFIRVFDYNTMASVKEFEAH 100 (312)
Q Consensus 26 ~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~----~~~~~v~~~~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~h 100 (312)
.|.+--|+.|-.-|-|.+.|....+..+.+. .....++++.|.+.++ .++.+-.+|.+.+||.+-....
T Consensus 182 ~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~------ 255 (636)
T KOG2394|consen 182 TPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGA------ 255 (636)
T ss_pred CCCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccC------
Confidence 3556678889889999988876543333222 2346799999998654 4455667899999986221100
Q ss_pred ccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeCCCeEEEEEcCCCcce
Q 047355 101 EDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAK 180 (312)
Q Consensus 101 ~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~ 180 (312)
+. .+....+++..+......+ .....++..+.--...+...+|+| ++.+||+.|.||.+||+|..+.+.+
T Consensus 256 t~--p~~~~~k~~~~f~i~t~ks-------k~~rNPv~~w~~~~g~in~f~FS~-DG~~LA~VSqDGfLRvF~fdt~eLl 325 (636)
T KOG2394|consen 256 TA--PSYQALKDGDQFAILTSKS-------KKTRNPVARWHIGEGSINEFAFSP-DGKYLATVSQDGFLRIFDFDTQELL 325 (636)
T ss_pred CC--CcccccCCCCeeEEeeeec-------cccCCccceeEeccccccceeEcC-CCceEEEEecCceEEEeeccHHHHH
Confidence 00 0111223333333221111 000011222222233677889998 7899999999999999999987766
Q ss_pred eeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEecccccCeEEEEEe
Q 047355 181 FTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFH 240 (312)
Q Consensus 181 ~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~i~~l~~~ 240 (312)
-.+..--.+..|++| +|||+||++|++|--|.||.+...+.+..-++|.++|..|+|.
T Consensus 326 g~mkSYFGGLLCvcW--SPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 326 GVMKSYFGGLLCVCW--SPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred HHHHhhccceEEEEE--cCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeec
Confidence 555555567788875 7899999999999999999999999999999999999999998
No 223
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=9.6e-14 Score=116.54 Aligned_cols=249 Identities=19% Similarity=0.248 Sum_probs=180.4
Q ss_pred eeEEecCCceeEEEEeeCCcEEEEecCCCeEEEEEccCceeeeee-cccccceeEEEEecC--CCEEEEEeCCCcEEEEe
Q 047355 53 KSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEF-EAHEDYIRSLAVHPT--FPFVLTASDDKLIKLWD 129 (312)
Q Consensus 53 ~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~-~~h~~~i~~~~~~~~--~~~l~t~s~d~~v~iwd 129 (312)
..+..|.+.|..+.|+..|..|++|+.|..|.+||+.+......+ .+|...|..-.|-|. ..-+++.+.||.+++=.
T Consensus 136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~ 215 (559)
T KOG1334|consen 136 KKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSE 215 (559)
T ss_pred hcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeee
Confidence 345678899999999999999999999999999999887765555 578877777667664 35689999999999976
Q ss_pred CCCCc--eeeeEecCCccceEEEEeCCCCCCEEEEEeCCCeEEEEEcCCCcceeee---ccccc---ceeEEEEEEcCC-
Q 047355 130 WEKNW--ECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTL---DAHEK---GINCIDYFITSD- 200 (312)
Q Consensus 130 ~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~---~~~~~---~v~~~~~~~~~~- 200 (312)
+.... +..+.+..|...+..++..|.....|.+++.|+.+.-+|++...+...+ ..+.. ..+.++ ..|.
T Consensus 216 i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia--~~P~n 293 (559)
T KOG1334|consen 216 ILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIA--VDPRN 293 (559)
T ss_pred eccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEe--cCCCC
Confidence 54322 2244566788888888888888899999999999999999987654433 22332 233444 3443
Q ss_pred ceEEEEEeCCCeEEEEeCCCCeE------EEEeccc------ccCeEEEEEeCCCcEEEEEeCCCcEEEEeCCC--c---
Q 047355 201 KVYLITGSDDFTVKVWDYETKTC------VQILEGH------TNNVTAVCFHPELRIIITASEDGTILIWNATT--F--- 263 (312)
Q Consensus 201 ~~~l~sg~~dg~i~vwd~~~~~~------~~~~~~h------~~~i~~l~~~~~~~~l~s~s~dg~v~iwd~~~--~--- 263 (312)
-..+++|+.|..+++||.+.-.. +..+..| .-.|++++|+.++.-|.+.=.|--|++|.-.- +
T Consensus 294 t~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p 373 (559)
T KOG1334|consen 294 TNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEP 373 (559)
T ss_pred ccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCC
Confidence 34789999999999999864321 2222222 23599999998777666666677899995322 2
Q ss_pred -------ceeee-cccCc--cceEEEEE-ecCCCeEEEEecCCeEEEEecc
Q 047355 264 -------RLQNT-LSSGL--ERVWSIGY-KKGSNQVAFGCDNGTLIVKIGN 303 (312)
Q Consensus 264 -------~~~~~-~~~~~--~~v~~~~~-~~~~~~l~~~~~~g~i~v~~~~ 303 (312)
.+.+. .++|. ..|..+-| .|...++++|++=|.|.||--.
T Consensus 374 ~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~ 424 (559)
T KOG1334|consen 374 DPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKK 424 (559)
T ss_pred CCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecc
Confidence 11222 44553 34777776 6889999999999999988643
No 224
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=5.7e-12 Score=111.91 Aligned_cols=233 Identities=13% Similarity=0.085 Sum_probs=149.4
Q ss_pred eEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEecC---CCeEEEEEccCceeeeeecccccceeEEEEecCCCEE
Q 047355 40 TVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSD---DKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFV 116 (312)
Q Consensus 40 ~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~---dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~l 116 (312)
.|.++|.+... .+.+..+...+....|+|+++.|+..+. +..|.+||+.++.. +.+..+.+.+...+|+|+++.|
T Consensus 183 ~l~~~d~dg~~-~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~-~~l~~~~g~~~~~~~SPDG~~l 260 (435)
T PRK05137 183 RLAIMDQDGAN-VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR-ELVGNFPGMTFAPRFSPDGRKV 260 (435)
T ss_pred EEEEECCCCCC-cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE-EEeecCCCcccCcEECCCCCEE
Confidence 68888876543 3455566778999999999998887653 46899999987654 3445566677889999999877
Q ss_pred E-EEeCCCc--EEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEe-CCC--eEEEEEcCCCcceeeecccccce
Q 047355 117 L-TASDDKL--IKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASAS-LDG--TIQIWNMDSSAAKFTLDAHEKGI 190 (312)
Q Consensus 117 ~-t~s~d~~--v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s-~dg--~v~iwd~~~~~~~~~~~~~~~~v 190 (312)
+ +.+.++. |.+||+.... ...+..+........|+|.+ ..++..+ .+| .|+++|+...... .+..+....
T Consensus 261 a~~~~~~g~~~Iy~~d~~~~~--~~~Lt~~~~~~~~~~~spDG-~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~~~~~ 336 (435)
T PRK05137 261 VMSLSQGGNTDIYTMDLRSGT--TTRLTDSPAIDTSPSYSPDG-SQIVFESDRSGSPQLYVMNADGSNPR-RISFGGGRY 336 (435)
T ss_pred EEEEecCCCceEEEEECCCCc--eEEccCCCCccCceeEcCCC-CEEEEEECCCCCCeEEEEECCCCCeE-EeecCCCcc
Confidence 5 5566665 5566765542 23344455555667899854 5555554 343 5778887665443 332223333
Q ss_pred eEEEEEEcCCceEEEEEeCC---CeEEEEeCCCCeEEEEecccccCeEEEEEeCCCcEEEEEeCC------CcEEEEeCC
Q 047355 191 NCIDYFITSDKVYLITGSDD---FTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITASED------GTILIWNAT 261 (312)
Q Consensus 191 ~~~~~~~~~~~~~l~sg~~d---g~i~vwd~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~s~d------g~v~iwd~~ 261 (312)
.... ++|+|.+|+..+.+ ..|.+||..++.. ..+. ....+....|+||++.|+..+.+ ..+.+.|+.
T Consensus 337 ~~~~--~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~ 412 (435)
T PRK05137 337 STPV--WSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLT 412 (435)
T ss_pred cCeE--ECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECC
Confidence 3333 47888888776543 3688899865543 3333 22346788999999988765543 257777876
Q ss_pred CcceeeecccCccceEEEEEecC
Q 047355 262 TFRLQNTLSSGLERVWSIGYKKG 284 (312)
Q Consensus 262 ~~~~~~~~~~~~~~v~~~~~~~~ 284 (312)
..+. ..+.. ...+...+|+|-
T Consensus 413 g~~~-~~l~~-~~~~~~p~Wsp~ 433 (435)
T PRK05137 413 GRNE-REVPT-PGDASDPAWSPL 433 (435)
T ss_pred CCce-EEccC-CCCccCcccCCC
Confidence 5443 33332 234556677663
No 225
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=1.8e-12 Score=114.91 Aligned_cols=234 Identities=14% Similarity=0.080 Sum_probs=148.9
Q ss_pred CeEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEecC---CCeEEEEEccCceeeeeecccccceeEEEEecCCCE
Q 047355 39 GTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSD---DKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPF 115 (312)
Q Consensus 39 g~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~---dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~ 115 (312)
..|.+||.+... .+.+..+...+....|+|+++.|+..+. +..|.+||+.+++.. .+..+.+...+..|+|+++.
T Consensus 184 ~~l~i~D~~g~~-~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~-~l~~~~g~~~~~~~SpDG~~ 261 (433)
T PRK04922 184 YALQVADSDGYN-PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE-LVASFRGINGAPSFSPDGRR 261 (433)
T ss_pred EEEEEECCCCCC-ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE-EeccCCCCccCceECCCCCE
Confidence 368899986543 3445555667888999999999887763 347999999876543 33333444567899999987
Q ss_pred EE-EEeCCC--cEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEe-CCCe--EEEEEcCCCcceeeecccccc
Q 047355 116 VL-TASDDK--LIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASAS-LDGT--IQIWNMDSSAAKFTLDAHEKG 189 (312)
Q Consensus 116 l~-t~s~d~--~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s-~dg~--v~iwd~~~~~~~~~~~~~~~~ 189 (312)
++ +.+.++ .|.+||+.... ...+..+........|+|. +..++..+ .+|. |.++|+.+++... +..+...
T Consensus 262 l~~~~s~~g~~~Iy~~d~~~g~--~~~lt~~~~~~~~~~~spD-G~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~~ 337 (433)
T PRK04922 262 LALTLSRDGNPEIYVMDLGSRQ--LTRLTNHFGIDTEPTWAPD-GKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQGNY 337 (433)
T ss_pred EEEEEeCCCCceEEEEECCCCC--eEECccCCCCccceEECCC-CCEEEEEECCCCCceEEEEECCCCCeEE-eecCCCC
Confidence 75 455555 58888886542 2334444444456789985 45555555 4554 6666766554322 2222122
Q ss_pred eeEEEEEEcCCceEEEEEeCCC---eEEEEeCCCCeEEEEecccccCeEEEEEeCCCcEEEEEeCC---CcEEEEeCCCc
Q 047355 190 INCIDYFITSDKVYLITGSDDF---TVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITASED---GTILIWNATTF 263 (312)
Q Consensus 190 v~~~~~~~~~~~~~l~sg~~dg---~i~vwd~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~s~d---g~v~iwd~~~~ 263 (312)
..... ++++|.+++..+.++ .|.+||+.+++... +. +........|+|++++++..+.+ +.|.+++.. +
T Consensus 338 ~~~~~--~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~-Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~-g 412 (433)
T PRK04922 338 NARAS--VSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRT-LT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD-G 412 (433)
T ss_pred ccCEE--ECCCCCEEEEEECCCCceeEEEEECCCCCeEE-CC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC-C
Confidence 22333 578888887665433 69999998776553 33 23344567999999988776653 357777874 4
Q ss_pred ceeeecccCccceEEEEEec
Q 047355 264 RLQNTLSSGLERVWSIGYKK 283 (312)
Q Consensus 264 ~~~~~~~~~~~~v~~~~~~~ 283 (312)
+....+..+...+..++|+|
T Consensus 413 ~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 413 RVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred CceEEcccCCCCCCCCccCC
Confidence 44555555555666777776
No 226
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=4.7e-12 Score=112.46 Aligned_cols=205 Identities=14% Similarity=0.092 Sum_probs=138.0
Q ss_pred CeEEEEEccCceeeeeecccccceeEEEEecCCCEEEEEeC---CCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCC
Q 047355 81 KFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASD---DKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDL 157 (312)
Q Consensus 81 g~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~---d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 157 (312)
..|.++|.+.. ..+.+..|...+.+.+|+|+++.|+..+. +..|.+||+..... ..+..+...+....|+|.+.
T Consensus 182 ~~l~~~d~dg~-~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~--~~l~~~~g~~~~~~~SPDG~ 258 (435)
T PRK05137 182 KRLAIMDQDGA-NVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR--ELVGNFPGMTFAPRFSPDGR 258 (435)
T ss_pred eEEEEECCCCC-CcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE--EEeecCCCcccCcEECCCCC
Confidence 47888888654 44566678888999999999999887753 46799999876532 23334445566778999654
Q ss_pred CEEEEEeCCCe--EEEEEcCCCcceeeecccccceeEEEEEEcCCceEEEEEeC-C--CeEEEEeCCCCeEEEEeccccc
Q 047355 158 NTFASASLDGT--IQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSD-D--FTVKVWDYETKTCVQILEGHTN 232 (312)
Q Consensus 158 ~~~~s~s~dg~--v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~-d--g~i~vwd~~~~~~~~~~~~h~~ 232 (312)
.++++.+.++. |.+||+.++... .+..+........ +++|+..++..+. + ..|+++|..+++.... ..+..
T Consensus 259 ~la~~~~~~g~~~Iy~~d~~~~~~~-~Lt~~~~~~~~~~--~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~l-t~~~~ 334 (435)
T PRK05137 259 KVVMSLSQGGNTDIYTMDLRSGTTT-RLTDSPAIDTSPS--YSPDGSQIVFESDRSGSPQLYVMNADGSNPRRI-SFGGG 334 (435)
T ss_pred EEEEEEecCCCceEEEEECCCCceE-EccCCCCccCcee--EcCCCCEEEEEECCCCCCeEEEEECCCCCeEEe-ecCCC
Confidence 45566676665 777788776543 3444443334444 4788887776653 3 3688889876654443 33455
Q ss_pred CeEEEEEeCCCcEEEEEeCC---CcEEEEeCCCcceeeecccCccceEEEEEecCCCeEEEEecC
Q 047355 233 NVTAVCFHPELRIIITASED---GTILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGCDN 294 (312)
Q Consensus 233 ~i~~l~~~~~~~~l~s~s~d---g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~ 294 (312)
.+....|+|+++.|+..+.+ ..|.+||..+... ..+.. ...+..+.|+|||+.|++.+.+
T Consensus 335 ~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~-~~~~~~p~~spDG~~i~~~~~~ 397 (435)
T PRK05137 335 RYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTS-GFLVEGPTWAPNGRVIMFFRQT 397 (435)
T ss_pred cccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccC-CCCCCCCeECCCCCEEEEEEcc
Confidence 56778999999999877643 3688888765433 22322 2246678999999999987663
No 227
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=1.4e-12 Score=115.38 Aligned_cols=222 Identities=9% Similarity=0.085 Sum_probs=141.2
Q ss_pred hhcccCcEEEEEEcCCCCeEEEEecC---CeEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEE-EecCCCeEEEEEc
Q 047355 13 FIQKSDRVKSVDFHPTQPWVLASLYS---GTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIV-CGSDDKFIRVFDY 88 (312)
Q Consensus 13 ~~~~~~~i~~~~~~~~~~~l~~~~~d---g~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~g~~dg~i~iwd~ 88 (312)
+..+.+.+.+.+|+|||+.|+..+.+ ..|.+||+.+++... +....+......|+|+++.|+ +.+.+|...+|.+
T Consensus 191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~ 269 (427)
T PRK02889 191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTV 269 (427)
T ss_pred eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEEE
Confidence 44566789999999999999877643 359999998775433 333334566789999998876 5677887677654
Q ss_pred --cCceeeeeecccccceeEEEEecCCCEEEEEeC-CCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeC
Q 047355 89 --NTMASVKEFEAHEDYIRSLAVHPTFPFVLTASD-DKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASL 165 (312)
Q Consensus 89 --~~~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~-d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~ 165 (312)
.+.. .+.+..+........|+|+++.++..+. ++...+|.+.........+..+........|+|. +..++..+.
T Consensus 270 d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpD-G~~Ia~~s~ 347 (427)
T PRK02889 270 NADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPD-GKLLAYISR 347 (427)
T ss_pred ECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCC-CCEEEEEEc
Confidence 3333 4455555555677889999998876654 5677777653211111112112223345678885 466666555
Q ss_pred CC---eEEEEEcCCCcceeeecccccceeEEEEEEcCCceEEEEEeCCC---eEEEEeCCCCeEEEEecccccCeEEEEE
Q 047355 166 DG---TIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDF---TVKVWDYETKTCVQILEGHTNNVTAVCF 239 (312)
Q Consensus 166 dg---~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg---~i~vwd~~~~~~~~~~~~h~~~i~~l~~ 239 (312)
++ .|.+||+.+++....... ....... +++|+..|+..+.++ .+.+.+. .+.....+..+.+.+...+|
T Consensus 348 ~~g~~~I~v~d~~~g~~~~lt~~--~~~~~p~--~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g~~~~p~w 422 (427)
T PRK02889 348 VGGAFKLYVQDLATGQVTALTDT--TRDESPS--FAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGGDVREPSW 422 (427)
T ss_pred cCCcEEEEEEECCCCCeEEccCC--CCccCce--ECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCCCCCCCcc
Confidence 43 699999987764432222 1223333 578888877766544 3555566 35555666666777888888
Q ss_pred eCC
Q 047355 240 HPE 242 (312)
Q Consensus 240 ~~~ 242 (312)
+|-
T Consensus 423 sp~ 425 (427)
T PRK02889 423 GPF 425 (427)
T ss_pred CCC
Confidence 873
No 228
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.55 E-value=2.3e-10 Score=98.41 Aligned_cols=266 Identities=15% Similarity=0.170 Sum_probs=165.4
Q ss_pred ccCcEEEEEEcCCCCeEEEEec----CCeEEEEeccCC--c--eeeeEEecCCceeEEEEeeCCcEEEEec-CCCeEEEE
Q 047355 16 KSDRVKSVDFHPTQPWVLASLY----SGTVCIWNYHSQ--T--TEKSVKVTDSPVRTAKFVAREHWIVCGS-DDKFIRVF 86 (312)
Q Consensus 16 ~~~~i~~~~~~~~~~~l~~~~~----dg~v~iw~~~~~--~--~~~~~~~~~~~v~~~~~~~~~~~l~~g~-~dg~i~iw 86 (312)
....-.-++++|++++|.++.+ +|.|..|.++.. + .+.........-..+.+.+++++|+++. .+|.|.++
T Consensus 35 ~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~ 114 (345)
T PF10282_consen 35 EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVF 114 (345)
T ss_dssp ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEE
Confidence 3445677899999999999877 579999988764 2 2223332333445788899999999887 48999999
Q ss_pred EccCc-eeeee--ecc-----------cccceeEEEEecCCCEEEEEeC-CCcEEEEeCCCCce-e--eeEec-CCccce
Q 047355 87 DYNTM-ASVKE--FEA-----------HEDYIRSLAVHPTFPFVLTASD-DKLIKLWDWEKNWE-C--TQTFE-GHSHYV 147 (312)
Q Consensus 87 d~~~~-~~~~~--~~~-----------h~~~i~~~~~~~~~~~l~t~s~-d~~v~iwd~~~~~~-~--~~~~~-~~~~~v 147 (312)
+++.. ..... ... -.....++.++|+++++++... ...|.+|++..... . ...+. ....-.
T Consensus 115 ~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GP 194 (345)
T PF10282_consen 115 PLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGP 194 (345)
T ss_dssp EECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSE
T ss_pred EccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCC
Confidence 99763 22211 111 1234678999999998876543 44799998865431 1 11121 222334
Q ss_pred EEEEeCCCCCCEEEEEeCCCeEEEEEcCC--Ccc--eeeecc----cccceeEEEEEEcCCceEEEEEe-CCCeEEEEeC
Q 047355 148 MQSAFNPKDLNTFASASLDGTIQIWNMDS--SAA--KFTLDA----HEKGINCIDYFITSDKVYLITGS-DDFTVKVWDY 218 (312)
Q Consensus 148 ~~~~~~~~~~~~~~s~s~dg~v~iwd~~~--~~~--~~~~~~----~~~~v~~~~~~~~~~~~~l~sg~-~dg~i~vwd~ 218 (312)
..+.|+|.+...+++...+++|.++++.. +.. ...+.. .......-.+.+++|+++|.+.. ....|.+|++
T Consensus 195 Rh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~ 274 (345)
T PF10282_consen 195 RHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDL 274 (345)
T ss_dssp EEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEE
T ss_pred cEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEE
Confidence 67889996555556677789999999982 221 111111 11111334455788998877655 5678999998
Q ss_pred C--CCe--EEEEecccccCeEEEEEeCCCcEEEEEe-CCCcEEEEeC--CCcceeeecc-cCccceEEEEE
Q 047355 219 E--TKT--CVQILEGHTNNVTAVCFHPELRIIITAS-EDGTILIWNA--TTFRLQNTLS-SGLERVWSIGY 281 (312)
Q Consensus 219 ~--~~~--~~~~~~~h~~~i~~l~~~~~~~~l~s~s-~dg~v~iwd~--~~~~~~~~~~-~~~~~v~~~~~ 281 (312)
. +++ .+..+.......+.++++|++++|+++. .++.|.+|+. .++++..... .....+.|+.|
T Consensus 275 d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 275 DPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp CTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred ecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 3 333 3444444445589999999999988776 5678999965 5666655432 23455666665
No 229
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=9.3e-12 Score=101.27 Aligned_cols=257 Identities=14% Similarity=0.166 Sum_probs=156.5
Q ss_pred CcEEEEEEcCCC-CeEEEEecCCeEEEEeccCCceee------------eEE-ecCCceeEEEEeeCCcEEEEecC-CCe
Q 047355 18 DRVKSVDFHPTQ-PWVLASLYSGTVCIWNYHSQTTEK------------SVK-VTDSPVRTAKFVAREHWIVCGSD-DKF 82 (312)
Q Consensus 18 ~~i~~~~~~~~~-~~l~~~~~dg~v~iw~~~~~~~~~------------~~~-~~~~~v~~~~~~~~~~~l~~g~~-dg~ 82 (312)
..|.+++|.|-+ +.|+.|+. +-|.||..+..-... .++ ....+|+++.+.+|+..+++++. |..
T Consensus 141 rnvtclawRPlsaselavgCr-~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsss 219 (445)
T KOG2139|consen 141 RNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSS 219 (445)
T ss_pred cceeEEEeccCCcceeeeeec-ceeEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcce
Confidence 479999999965 45555554 568999865321111 111 12358999999999999999884 689
Q ss_pred EEEEEccCceeeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEE
Q 047355 83 IRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFAS 162 (312)
Q Consensus 83 i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s 162 (312)
|++||.+++..+.-....-+.+.-+.|+|++.++..+.-|+..++|+..+...... ..-...++....|+|.+..++++
T Consensus 220 i~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~er-w~lgsgrvqtacWspcGsfLLf~ 298 (445)
T KOG2139|consen 220 IMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKER-WILGSGRVQTACWSPCGSFLLFA 298 (445)
T ss_pred EEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecc-eeccCCceeeeeecCCCCEEEEE
Confidence 99999998776544434456688899999999999999999999996554322222 22233488899999987777777
Q ss_pred EeCCCeEEEEEcCCCcceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEecccccCeEEEEEeCC
Q 047355 163 ASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPE 242 (312)
Q Consensus 163 ~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~i~~l~~~~~ 242 (312)
++....++-.......... .-.++......+-|+..-....-.+--.+++.+++|.|.
T Consensus 299 ~sgsp~lysl~f~~~~~~~----------------------~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDps 356 (445)
T KOG2139|consen 299 CSGSPRLYSLTFDGEDSVF----------------------LRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPS 356 (445)
T ss_pred EcCCceEEEEeecCCCccc----------------------cCcccceeeeeeccchhhhhhcCcccccCccceeeECCC
Confidence 7654433322222211111 101111122222233211000000112567889999999
Q ss_pred CcEEEEEeCCC--------cEEEEeCCCc---ceeeecccCccceEEEEEec---CCCeEEEEecCCeEE
Q 047355 243 LRIIITASEDG--------TILIWNATTF---RLQNTLSSGLERVWSIGYKK---GSNQVAFGCDNGTLI 298 (312)
Q Consensus 243 ~~~l~s~s~dg--------~v~iwd~~~~---~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~~g~i~ 298 (312)
|.+||+.-+.+ .|.+||...- ++..--....+....+.|+| ++..|..+...|.+.
T Consensus 357 GeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq 426 (445)
T KOG2139|consen 357 GEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQ 426 (445)
T ss_pred CCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceE
Confidence 99999876543 3667776542 11110111122344555654 567788888777654
No 230
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.53 E-value=4.7e-11 Score=102.88 Aligned_cols=261 Identities=17% Similarity=0.176 Sum_probs=161.1
Q ss_pred EEEecCCeEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEecCCCeEEEEEccCceeeeeecccccceeEEEEecC
Q 047355 33 LASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPT 112 (312)
Q Consensus 33 ~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~ 112 (312)
++-..+|.|.+.|..+.+....+.........+.|++|++++++++.||.|.++|+.+.+.+++++.... -..++++++
T Consensus 10 V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~-~~~i~~s~D 88 (369)
T PF02239_consen 10 VVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGN-PRGIAVSPD 88 (369)
T ss_dssp EEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSE-EEEEEE--T
T ss_pred EEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCC-cceEEEcCC
Confidence 3456789999999999888888876555545677999999999999999999999999998888876544 577999999
Q ss_pred CCEEEEEe-CCCcEEEEeCCCCceeeeEecC-------CccceEEEEeCCCCCCEEEEEeCCCeEEEEEcCCCccee--e
Q 047355 113 FPFVLTAS-DDKLIKLWDWEKNWECTQTFEG-------HSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKF--T 182 (312)
Q Consensus 113 ~~~l~t~s-~d~~v~iwd~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~--~ 182 (312)
+++++++. ..+.+.++|.++. +..+.+.. ....+..+..+|....++++.-..+.|.+.|........ .
T Consensus 89 G~~~~v~n~~~~~v~v~D~~tl-e~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~ 167 (369)
T PF02239_consen 89 GKYVYVANYEPGTVSVIDAETL-EPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTT 167 (369)
T ss_dssp TTEEEEEEEETTEEEEEETTT---EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEE
T ss_pred CCEEEEEecCCCceeEeccccc-cceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceee
Confidence 99988665 6899999998765 33443322 233455566666544444444455888888876654332 1
Q ss_pred ecccccceeEEEEEEcCCceEEEE-EeCCCeEEEEeCCCCeEEEEec----ccccCeEEEEEeCCC----------cEEE
Q 047355 183 LDAHEKGINCIDYFITSDKVYLIT-GSDDFTVKVWDYETKTCVQILE----GHTNNVTAVCFHPEL----------RIII 247 (312)
Q Consensus 183 ~~~~~~~v~~~~~~~~~~~~~l~s-g~~dg~i~vwd~~~~~~~~~~~----~h~~~i~~l~~~~~~----------~~l~ 247 (312)
+.. ..... +..+++++++++. ...+..|-++|.++++....+. .|..++..+ .||.. ...+
T Consensus 168 i~~-g~~~~--D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~~~~ 243 (369)
T PF02239_consen 168 IKV-GRFPH--DGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLGYFAI 243 (369)
T ss_dssp EE---TTEE--EEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSSSSEE
T ss_pred ecc-ccccc--ccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccc-cCCCcceEEeeccccceec
Confidence 211 11122 3446788887655 4567799999999988776553 244444433 23322 2222
Q ss_pred EEeCCCcEEEEeCCCcceeeecccCccceEEEEEecCCCeEEEE----ecCCeEEEE
Q 047355 248 TASEDGTILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFG----CDNGTLIVK 300 (312)
Q Consensus 248 s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~----~~~g~i~v~ 300 (312)
+.-....+.+||..+++...++...... .-+.-+|+++++.+. .+.++|.|.
T Consensus 244 ~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~vi 299 (369)
T PF02239_consen 244 PLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVI 299 (369)
T ss_dssp EEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEE
T ss_pred ccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEE
Confidence 2222345667888889998888876555 677779999999887 444555554
No 231
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.53 E-value=1.7e-13 Score=116.37 Aligned_cols=170 Identities=19% Similarity=0.291 Sum_probs=131.1
Q ss_pred cCCCEEEEEeCCCcEEEEeCCCCceeeeEec----CCccceEEEEeCCCCCCEEEEEeCCCeEEEEEcCCCc----c---
Q 047355 111 PTFPFVLTASDDKLIKLWDWEKNWECTQTFE----GHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSA----A--- 179 (312)
Q Consensus 111 ~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~----~--- 179 (312)
|.+--++.|-.-|.+.+.|... .+..+.+. -....+.++.|.|.+...|++.-.+|.+.+||..... +
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~-~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~ 261 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPIN-FEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQ 261 (636)
T ss_pred CCCcceEEeeccCceEEecchh-hHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCccc
Confidence 4455577788888898888543 12111111 1235788999999999999999999999999864210 0
Q ss_pred -------eee--------------ecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEecccccCeEEEE
Q 047355 180 -------KFT--------------LDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVC 238 (312)
Q Consensus 180 -------~~~--------------~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~i~~l~ 238 (312)
... ....+..++. +.+++||.+||+.+.||.++|||..+.+++..++..-+...|++
T Consensus 262 ~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~--f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvc 339 (636)
T KOG2394|consen 262 ALKDGDQFAILTSKSKKTRNPVARWHIGEGSINE--FAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVC 339 (636)
T ss_pred ccCCCCeeEEeeeeccccCCccceeEeccccccc--eeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEE
Confidence 000 0001122333 34678999999999999999999998888888877778899999
Q ss_pred EeCCCcEEEEEeCCCcEEEEeCCCcceeeecccCccceEEEEEec
Q 047355 239 FHPELRIIITASEDGTILIWNATTFRLQNTLSSGLERVWSIGYKK 283 (312)
Q Consensus 239 ~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~ 283 (312)
|+||+++|++|++|..|.||.+...+++..-.+|..-|..|+|.|
T Consensus 340 WSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 340 WSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred EcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 999999999999999999999999999999999999999999986
No 232
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=4.8e-12 Score=112.30 Aligned_cols=205 Identities=16% Similarity=0.087 Sum_probs=135.2
Q ss_pred CeEEEEEccCceeeeeecccccceeEEEEecCCCEEEEEeCC---CcEEEEeCCCCceeeeEecCCccceEEEEeCCCCC
Q 047355 81 KFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDD---KLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDL 157 (312)
Q Consensus 81 g~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d---~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 157 (312)
..|.+||.+.. ..+.+..+...+.+.+|+|+++.|+..+.+ ..+.+||+..... ..+...........|+|.+.
T Consensus 184 ~~l~i~D~~g~-~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~--~~l~~~~g~~~~~~~SpDG~ 260 (433)
T PRK04922 184 YALQVADSDGY-NPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR--ELVASFRGINGAPSFSPDGR 260 (433)
T ss_pred EEEEEECCCCC-CceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE--EEeccCCCCccCceECCCCC
Confidence 46889998654 344566677789999999999999887643 3689999875432 12222233344678999654
Q ss_pred CEEEEEeCCC--eEEEEEcCCCcceeeecccccceeEEEEEEcCCceEEEEEeC-CCe--EEEEeCCCCeEEEEeccccc
Q 047355 158 NTFASASLDG--TIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSD-DFT--VKVWDYETKTCVQILEGHTN 232 (312)
Q Consensus 158 ~~~~s~s~dg--~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~-dg~--i~vwd~~~~~~~~~~~~h~~ 232 (312)
.++++.+.+| .|++||+.+++.. .+..+........ +++|+.+++..+. +|. |+++|+.+++.... ..+..
T Consensus 261 ~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~--~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~l-t~~g~ 336 (433)
T PRK04922 261 RLALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPT--WAPDGKSIYFTSDRGGRPQIYRVAASGGSAERL-TFQGN 336 (433)
T ss_pred EEEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceE--ECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-ecCCC
Confidence 4555666666 5999999876543 3444433333344 4788887776653 444 77777766654332 22334
Q ss_pred CeEEEEEeCCCcEEEEEeCCC---cEEEEeCCCcceeeecccCccceEEEEEecCCCeEEEEecC
Q 047355 233 NVTAVCFHPELRIIITASEDG---TILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGCDN 294 (312)
Q Consensus 233 ~i~~l~~~~~~~~l~s~s~dg---~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~ 294 (312)
.....+|+|++++|+..+.++ .|.+||+.+++.. .+... .......|+|||+.|++.+.+
T Consensus 337 ~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~-~~~~~p~~spdG~~i~~~s~~ 399 (433)
T PRK04922 337 YNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPG-SLDESPSFAPNGSMVLYATRE 399 (433)
T ss_pred CccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCCC-CCCCCceECCCCCEEEEEEec
Confidence 455789999999988765443 6999999877654 33322 234567899999999988774
No 233
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.52 E-value=2.7e-12 Score=100.65 Aligned_cols=153 Identities=21% Similarity=0.352 Sum_probs=103.4
Q ss_pred EEEEecCCCEEEEEeC----------CCcEEEEeCCCCceeeeEecC-CccceEEEEeCCCCCCEEEE--EeCCCeEEEE
Q 047355 106 SLAVHPTFPFVLTASD----------DKLIKLWDWEKNWECTQTFEG-HSHYVMQSAFNPKDLNTFAS--ASLDGTIQIW 172 (312)
Q Consensus 106 ~~~~~~~~~~l~t~s~----------d~~v~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~s--~s~dg~v~iw 172 (312)
.+.|+|.|.+|+.-.. -+...+|-++........+.- ....|.+++|+|.+ ..|++ |..+..|.+|
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g-~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNG-NEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCC-CEEEEEEccCCcccEEE
Confidence 4677888876653222 123445544332222333322 33469999999965 45433 4467799999
Q ss_pred EcCCCcceeeecccccceeEEEEEEcCCceEEEEEeC---CCeEEEEeCCCCeEEEEecccccCeEEEEEeCCCcEEEEE
Q 047355 173 NMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSD---DFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITA 249 (312)
Q Consensus 173 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~---dg~i~vwd~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~ 249 (312)
|++ .+.+..+. ....+.+. .+|+|++++.|+. .|.|.+||.++.+.+.... |. .++.++|+|+|++++++
T Consensus 89 d~~-~~~i~~~~--~~~~n~i~--wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~~-~~t~~~WsPdGr~~~ta 161 (194)
T PF08662_consen 89 DVK-GKKIFSFG--TQPRNTIS--WSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-HS-DATDVEWSPDGRYLATA 161 (194)
T ss_pred cCc-ccEeEeec--CCCceEEE--ECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-cC-cEEEEEEcCCCCEEEEE
Confidence 997 44444443 34566665 4789999998874 4679999999888887665 33 47899999999999988
Q ss_pred eC------CCcEEEEeCCCcceee
Q 047355 250 SE------DGTILIWNATTFRLQN 267 (312)
Q Consensus 250 s~------dg~v~iwd~~~~~~~~ 267 (312)
.. |+.++||+.. ++++.
T Consensus 162 ~t~~r~~~dng~~Iw~~~-G~~l~ 184 (194)
T PF08662_consen 162 TTSPRLRVDNGFKIWSFQ-GRLLY 184 (194)
T ss_pred EeccceeccccEEEEEec-CeEeE
Confidence 75 7889999985 44433
No 234
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.51 E-value=1.1e-11 Score=99.65 Aligned_cols=273 Identities=13% Similarity=0.179 Sum_probs=176.0
Q ss_pred EEEEcCCCCeEEEEecCCeEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEe-cCCCeEEEEEccCceeeeeeccc
Q 047355 22 SVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCG-SDDKFIRVFDYNTMASVKEFEAH 100 (312)
Q Consensus 22 ~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g-~~dg~i~iwd~~~~~~~~~~~~h 100 (312)
-.+|+|+|+++|+...- ++.|=|..+.+..+.+.. -..|.-+.|..+..+++++ ..++.|.+|++...+--.++...
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg 90 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEG 90 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccC
Confidence 35799999999988766 667767665444333322 2457778888887776654 57889999999887766677777
Q ss_pred ccceeEEEEecCCCEE-EEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeC--------------
Q 047355 101 EDYIRSLAVHPTFPFV-LTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASL-------------- 165 (312)
Q Consensus 101 ~~~i~~~~~~~~~~~l-~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~-------------- 165 (312)
..++.+++|+|+|+.+ .+...|-.+-+|.+.+.... .+.-....+...+|+|. +.+.+-++.
T Consensus 91 ~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~--~~~~pK~~~kg~~f~~d-g~f~ai~sRrDCkdyv~i~~c~~ 167 (447)
T KOG4497|consen 91 QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY--LLPHPKTNVKGYAFHPD-GQFCAILSRRDCKDYVQISSCKA 167 (447)
T ss_pred CCcceeeeECCCcceEeeeecceeEEEEEEeccceeE--EecccccCceeEEECCC-CceeeeeecccHHHHHHHHhhHH
Confidence 7889999999999665 46777999999998764221 11212223355566663 333333321
Q ss_pred ----------------------CCeEEEEEcCCCcceeeeccc-ccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCe
Q 047355 166 ----------------------DGTIQIWNMDSSAAKFTLDAH-EKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKT 222 (312)
Q Consensus 166 ----------------------dg~v~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~ 222 (312)
+..+-+||---...+ +.-| ..++..+.| +|.+++++.|+.|+.+++-+--+.+
T Consensus 168 W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv--~aYe~~lG~k~v~w--sP~~qflavGsyD~~lrvlnh~tWk 243 (447)
T KOG4497|consen 168 WILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKV--YAYERGLGLKFVEW--SPCNQFLAVGSYDQMLRVLNHFTWK 243 (447)
T ss_pred HHHHHhcCCCcccccCceECCCCcEEEEecchhhhee--eeeeeccceeEEEe--ccccceEEeeccchhhhhhceeeee
Confidence 112233332111000 0111 134555554 6678999999999998875421111
Q ss_pred EE------------------------------------------------------------EEec------ccccCeEE
Q 047355 223 CV------------------------------------------------------------QILE------GHTNNVTA 236 (312)
Q Consensus 223 ~~------------------------------------------------------------~~~~------~h~~~i~~ 236 (312)
.. +.++ .....+.-
T Consensus 244 ~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~ 323 (447)
T KOG4497|consen 244 PFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGK 323 (447)
T ss_pred ehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccce
Confidence 00 0011 01123667
Q ss_pred EEEeCCCcEEEEEeCC--CcEEEEeCCCcceeeecccCccceEEEEEecCCCeEEEEecCCeEEEEeccC
Q 047355 237 VCFHPELRIIITASED--GTILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGCDNGTLIVKIGNS 304 (312)
Q Consensus 237 l~~~~~~~~l~s~s~d--g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~v~~~~~ 304 (312)
++|++|..+++|-.+. +.+-+||++..++-. +-.....+.+..|.|.--.|+.+....++++|-+..
T Consensus 324 lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~a-vLiQk~piraf~WdP~~prL~vctg~srLY~W~psg 392 (447)
T KOG4497|consen 324 LAFSCDSTYAATRNDKYPNALWLWDLQNLKLHA-VLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSG 392 (447)
T ss_pred eeecCCceEEeeecCCCCceEEEEechhhhhhh-hhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCC
Confidence 9999999988887654 569999998766533 223457788999999999999999988888887653
No 235
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.51 E-value=1.1e-13 Score=131.66 Aligned_cols=197 Identities=16% Similarity=0.306 Sum_probs=158.9
Q ss_pred ccCcEEEEEEcCCCCeEEEEecCCeEEEEeccCCceeeeEEe-cCCceeEEEEeeCCcEEEEecCCCeEEEEEccCceee
Q 047355 16 KSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKV-TDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASV 94 (312)
Q Consensus 16 ~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~ 94 (312)
+-..|.++.=||..++-++|+.||.|++|.+..+..+..++. ....++.+.|+.+|+....+..||.+-+|... .++.
T Consensus 2207 ~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~ 2285 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPY 2285 (2439)
T ss_pred ccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-Ccce
Confidence 446788888899999999999999999999987777766653 23678889999999999999999999999987 3556
Q ss_pred eeecccccceeEEEEecCCCEEEEEe---CCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeCCCeEEE
Q 047355 95 KEFEAHEDYIRSLAVHPTFPFVLTAS---DDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQI 171 (312)
Q Consensus 95 ~~~~~h~~~i~~~~~~~~~~~l~t~s---~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~i 171 (312)
...+.|.....++.|-. ..+++++ +++.+.+||..........-..|...+..+++.|. .++|++|+.+|.|++
T Consensus 2286 ~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~-~qllisggr~G~v~l 2362 (2439)
T KOG1064|consen 2286 TSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPK-HQLLISGGRKGEVCL 2362 (2439)
T ss_pred eccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCc-ceEEEecCCcCcEEE
Confidence 67788999999988876 5566653 57889999975433322333789899999999995 589999999999999
Q ss_pred EEcCCCcceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEec
Q 047355 172 WNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILE 228 (312)
Q Consensus 172 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~ 228 (312)
||++..+.++.++. + . ...++++|+..|.|++|++.....++.+.
T Consensus 2363 ~D~rqrql~h~~~~-------~----~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2363 FDIRQRQLRHTFQA-------L----D-TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred eehHHHHHHHHhhh-------h----h-hhheeeccCcccceEEEEccccchhhcCc
Confidence 99998877766654 1 2 34689999999999999998776666554
No 236
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.51 E-value=1.8e-12 Score=117.96 Aligned_cols=262 Identities=19% Similarity=0.244 Sum_probs=174.9
Q ss_pred CeEEEEecCCeEEEEeccCCceeeeEEecC-CceeEE--EEeeCCcEEEEecCCCeEEEEEccCceeeeeecccccceeE
Q 047355 30 PWVLASLYSGTVCIWNYHSQTTEKSVKVTD-SPVRTA--KFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRS 106 (312)
Q Consensus 30 ~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~-~~v~~~--~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~ 106 (312)
++|++| ..--|.++|+.....+..+.... .++... ...-.+..++++..-+.+..=+.. ...+..-.+.|..
T Consensus 18 ~~llag-~gp~i~~yd~~s~~li~~~~~~~~~~~H~~e~~~~l~~~~~v~~~~~~~v~~~~~~----~~~~~~~s~wi~g 92 (967)
T KOG0974|consen 18 DYLLAG-SGPEILVYDLSSGCLIRHLIQSKILEVHRGEGKVKLLSGKIVTCAKSDEVYVKEAS----NQIIERFSDWIFG 92 (967)
T ss_pred ceeeec-CCCceEEeeCCchhHhhhhhhhcccccccccccceeccceEEEEEeecceeecchh----hhhhhhccccccc
Confidence 667655 44678999998876654433211 011100 000112334444333322221111 1111222334444
Q ss_pred EEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEecCCcc----ceEEEEeCCCCCCEEEEEeCCCeEEEEEcCCCcceee
Q 047355 107 LAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSH----YVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFT 182 (312)
Q Consensus 107 ~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~ 182 (312)
..+.-..+.++.+..+..+.+||....... ........ ...-..+++ +.-++++|+.-+.|.+|+.........
T Consensus 93 ~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~-~~i~~~er~~l~~~~~~g~s~-~~~~i~~gsv~~~iivW~~~~dn~p~~ 170 (967)
T KOG0974|consen 93 AKLFEENKKIALVTSRNSLLIRDSKNSSVL-SKIQSDERCTLYSSLIIGDSA-EELYIASGSVFGEIIVWKPHEDNKPIR 170 (967)
T ss_pred cchhhhcceEEEEEcCceEEEEecccCcee-hhcCCCceEEEEeEEEEeccC-cEEEEEeccccccEEEEeccccCCcce
Confidence 455556677888888999999998654222 11111111 111223344 446889999999999999986555557
Q ss_pred ecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEE-EecccccCeEEEEEeCCCcEEEEEeCCCcEEEEeCC
Q 047355 183 LDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQ-ILEGHTNNVTAVCFHPELRIIITASEDGTILIWNAT 261 (312)
Q Consensus 183 ~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~-~~~~h~~~i~~l~~~~~~~~l~s~s~dg~v~iwd~~ 261 (312)
+.+|+..+..+.+ +.||.++++.|+|..+++|++++.+... ..-+|...|..++|+|+ .++|++.|.+.++|+..
T Consensus 171 l~GHeG~iF~i~~--s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~ 246 (967)
T KOG0974|consen 171 LKGHEGSIFSIVT--SLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVN 246 (967)
T ss_pred ecccCCceEEEEE--ccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEecc
Confidence 8899999888774 6789999999999999999999877665 66789999999999998 89999999999999765
Q ss_pred CcceeeecccCc-cceEEEEEecCCCeEEEEecCCeEEEEecc
Q 047355 262 TFRLQNTLSSGL-ERVWSIGYKKGSNQVAFGCDNGTLIVKIGN 303 (312)
Q Consensus 262 ~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~g~i~v~~~~ 303 (312)
. +.+.+...|. ..+|.++..++--.++++++||.+++|-..
T Consensus 247 ~-~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~ 288 (967)
T KOG0974|consen 247 G-TQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLN 288 (967)
T ss_pred c-ceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhh
Confidence 4 3344666665 459999999999999999999999877543
No 237
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.50 E-value=2.6e-12 Score=103.74 Aligned_cols=249 Identities=21% Similarity=0.362 Sum_probs=180.5
Q ss_pred chhhhhhhhhcccCcEEEEEEcCCCCeEEEEecCCeEEEEe-ccCCceeeeEEe-cCCceeEEEEeeCCcEEEEecCCCe
Q 047355 5 LELQIEKEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWN-YHSQTTEKSVKV-TDSPVRTAKFVAREHWIVCGSDDKF 82 (312)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~-~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~g~~dg~ 82 (312)
.++-+.+.+.++.+.|++...-|..+-+++.+.|.++|||- .+.++-...+.. -..++++..+..+...|++|-..|+
T Consensus 12 ~kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngt 91 (404)
T KOG1409|consen 12 KKPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGT 91 (404)
T ss_pred cchhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecce
Confidence 34556678889999999999999999999999999999995 333333333322 2357888899999999999999999
Q ss_pred EEEEEc----cCceeeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCC--C
Q 047355 83 IRVFDY----NTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPK--D 156 (312)
Q Consensus 83 i~iwd~----~~~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~--~ 156 (312)
+.-+.+ ++....+.+..|...|..+-|+-..+.+++.+.|..+.---.+.+.. -.+++....-.+. +
T Consensus 92 vtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~-------lg~Y~~~~~~t~~~~d 164 (404)
T KOG1409|consen 92 VTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNR-------LGGYNFETPASALQFD 164 (404)
T ss_pred EEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCc-------ccceEeeccCCCCcee
Confidence 998854 45556777889999999999988888899999887664322221111 1111111111111 1
Q ss_pred CCEEEEEeCCCeEEEEEc--CCCcceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeE-EEEecccccC
Q 047355 157 LNTFASASLDGTIQIWNM--DSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTC-VQILEGHTNN 233 (312)
Q Consensus 157 ~~~~~s~s~dg~v~iwd~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~-~~~~~~h~~~ 233 (312)
......|-..|.|.+-.+ .....+.++.+|...+.++.| .+....+.+|..|..+.+||+...+- ...+.+|...
T Consensus 165 ~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~W--d~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~k 242 (404)
T KOG1409|consen 165 ALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKW--DPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDK 242 (404)
T ss_pred eEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEE--cCCCcEEEeccccCceEEEeccCCcceeeeeccchhh
Confidence 112333444444444333 345667788999999999987 45667899999999999999865433 3556789999
Q ss_pred eEEEEEeCCCcEEEEEeCCCcEEEEeCCC
Q 047355 234 VTAVCFHPELRIIITASEDGTILIWNATT 262 (312)
Q Consensus 234 i~~l~~~~~~~~l~s~s~dg~v~iwd~~~ 262 (312)
|..+.+-+..+.+.+++.||.|.+||.+.
T Consensus 243 V~~l~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 243 VQALSYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred hhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence 99999999999999999999999999764
No 238
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.49 E-value=7.1e-12 Score=101.93 Aligned_cols=196 Identities=16% Similarity=0.309 Sum_probs=140.7
Q ss_pred cceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeCCCeEEEEEcCCC----
Q 047355 102 DYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSS---- 177 (312)
Q Consensus 102 ~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~---- 177 (312)
..+..++||+.-..++++..|-.|++||-+.. .+..........+.+++|.|....-++.++..| |.+|.....
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~ksst-~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~ 176 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSST-CPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNAN 176 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCCC-CCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccc
Confidence 35778899986666788999999999996542 222222334467889999998877777777655 899987531
Q ss_pred c----------ceeeecccccceeEEEEEEcCCceEEEEEe-CCCeEEEEeCCCCeEEEEecccccCeEEEEEeCCCcEE
Q 047355 178 A----------AKFTLDAHEKGINCIDYFITSDKVYLITGS-DDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRII 246 (312)
Q Consensus 178 ~----------~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~-~dg~i~vwd~~~~~~~~~~~~h~~~i~~l~~~~~~~~l 246 (312)
. .+..-.+| ..|+++.| .+||..+++++ .|..|.+||..++.......---+.+.-+.|+||+.+|
T Consensus 177 r~~~~~s~~~~qvl~~pgh-~pVtsmqw--n~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~l 253 (445)
T KOG2139|consen 177 RNIRMMSTHHLQVLQDPGH-NPVTSMQW--NEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVL 253 (445)
T ss_pred cccccccccchhheeCCCC-ceeeEEEE--cCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEE
Confidence 1 11122344 56777775 57788888887 56789999999887766554445678999999999999
Q ss_pred EEEeCCCcEEEEeCC-CcceeeecccCccceEEEEEecCCCeEEEEecCCeEEEEecc
Q 047355 247 ITASEDGTILIWNAT-TFRLQNTLSSGLERVWSIGYKKGSNQVAFGCDNGTLIVKIGN 303 (312)
Q Consensus 247 ~s~s~dg~v~iwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~v~~~~ 303 (312)
+++.-|+..++|+.. ++....-. -..++|..-.|+|+|..|..++....+.....-
T Consensus 254 faAt~davfrlw~e~q~wt~erw~-lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f 310 (445)
T KOG2139|consen 254 FAATCDAVFRLWQENQSWTKERWI-LGSGRVQTACWSPCGSFLLFACSGSPRLYSLTF 310 (445)
T ss_pred EEecccceeeeehhcccceeccee-ccCCceeeeeecCCCCEEEEEEcCCceEEEEee
Confidence 999999999999543 33222211 122388899999999999988877766555443
No 239
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.48 E-value=2.2e-11 Score=96.47 Aligned_cols=261 Identities=15% Similarity=0.139 Sum_probs=166.0
Q ss_pred CCeEEEEeccCCceee--eE-EecCCceeEEEEee---CCc-EEEEecCCCeEEEEEccCceeeeeecccc------cce
Q 047355 38 SGTVCIWNYHSQTTEK--SV-KVTDSPVRTAKFVA---REH-WIVCGSDDKFIRVFDYNTMASVKEFEAHE------DYI 104 (312)
Q Consensus 38 dg~v~iw~~~~~~~~~--~~-~~~~~~v~~~~~~~---~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~h~------~~i 104 (312)
-|++.++++...+... .+ ....+.+..+.|.. ++. .++-+-.+|.|.++..........+++-. ..-
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~ 124 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEA 124 (339)
T ss_pred ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheee
Confidence 3678888876544332 11 12223444455542 344 45667778999999765544333333221 123
Q ss_pred eEEEEecCCCEEEEEeCCCcEEEEeC-CCCceeeeEecCCccceEEEEeCCCCCCEEEEEeCCCeEEEEEcCC-Ccceee
Q 047355 105 RSLAVHPTFPFVLTASDDKLIKLWDW-EKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDS-SAAKFT 182 (312)
Q Consensus 105 ~~~~~~~~~~~l~t~s~d~~v~iwd~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~-~~~~~~ 182 (312)
.++.|++.+..++++-.+|.+.+-+. ....+..+..+.|....+...|+..+++++.+|+.|+.+..||++. +..+..
T Consensus 125 lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~ 204 (339)
T KOG0280|consen 125 LSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWH 204 (339)
T ss_pred eEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeee
Confidence 46778888888999988999884432 2222334567889999999999988899999999999999999993 333333
Q ss_pred -ecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCC-CeEEEEecccccCeEEEEEeCC--CcEEEEEeCCCcEEEE
Q 047355 183 -LDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYET-KTCVQILEGHTNNVTAVCFHPE--LRIIITASEDGTILIW 258 (312)
Q Consensus 183 -~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~-~~~~~~~~~h~~~i~~l~~~~~--~~~l~s~s~dg~v~iw 258 (312)
...|..+|.++... .|.+.++++|+.|-.|++||.++ ++++..-. -.+.|+.+.++|. .+.|+++...| .+|-
T Consensus 205 n~kvH~~GV~SI~ss-~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~ 281 (339)
T KOG0280|consen 205 NSKVHTSGVVSIYSS-PPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNG-AKIL 281 (339)
T ss_pred cceeeecceEEEecC-CCCCceEEEeccccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhcC-ceEE
Confidence 45688888888643 45788999999999999999984 55554322 3478999999984 34566666555 3555
Q ss_pred eCCCcce-----eeecccCccceEEEEEecCCCeEEEEec-CCeEE-EEe
Q 047355 259 NATTFRL-----QNTLSSGLERVWSIGYKKGSNQVAFGCD-NGTLI-VKI 301 (312)
Q Consensus 259 d~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~g~i~-v~~ 301 (312)
+.+.... ......|..=...-.|......||+++- |..++ +|.
T Consensus 282 ~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl 331 (339)
T KOG0280|consen 282 DSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWL 331 (339)
T ss_pred Eecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeee
Confidence 5544221 1222233333333344333456777654 55544 443
No 240
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.46 E-value=3.6e-12 Score=116.09 Aligned_cols=195 Identities=21% Similarity=0.271 Sum_probs=147.0
Q ss_pred cEEEEEEcCCCCeEEEEecCCeEEEEeccCCceeeeEEecC----CceeEEEEeeCCcEEEEecCCCeEEEEEccCceee
Q 047355 19 RVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTD----SPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASV 94 (312)
Q Consensus 19 ~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~ 94 (312)
-|..-.+.-...+++.+..+..+.+||.............+ .....+.++++.-++++|+.-+.|.+|+....+..
T Consensus 89 wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p 168 (967)
T KOG0974|consen 89 WIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKP 168 (967)
T ss_pred cccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCc
Confidence 34444444566788889999999999986554433332221 12223334556678999999999999998744443
Q ss_pred eeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeCCCeEEEEEc
Q 047355 95 KEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNM 174 (312)
Q Consensus 95 ~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~ 174 (312)
..+.+|++.|.++.++.++.++++.|+|.++|+|++.+.....-..-+|+..+++..|.|. .+++++.|.++++|+.
T Consensus 169 ~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n---~i~t~gedctcrvW~~ 245 (967)
T KOG0974|consen 169 IRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN---RIITVGEDCTCRVWGV 245 (967)
T ss_pred ceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc---eeEEeccceEEEEEec
Confidence 4688999999999999999999999999999999998775555466789999999999984 8999999999999976
Q ss_pred CCCcceeeecccc-cceeEEEEEEcCCceEEEEEeCCCeEEEEeCC
Q 047355 175 DSSAAKFTLDAHE-KGINCIDYFITSDKVYLITGSDDFTVKVWDYE 219 (312)
Q Consensus 175 ~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~ 219 (312)
+..+. ..+..|. ..+..++ ..++...+++++.|+.+++||..
T Consensus 246 ~~~~l-~~y~~h~g~~iw~~~--~~~~~~~~vT~g~Ds~lk~~~l~ 288 (967)
T KOG0974|consen 246 NGTQL-EVYDEHSGKGIWKIA--VPIGVIIKVTGGNDSTLKLWDLN 288 (967)
T ss_pred cccee-hhhhhhhhcceeEEE--EcCCceEEEeeccCcchhhhhhh
Confidence 54333 2555664 3455554 35677889999999999999874
No 241
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.46 E-value=1.5e-11 Score=96.45 Aligned_cols=120 Identities=13% Similarity=0.256 Sum_probs=84.8
Q ss_pred eEEEEEcCCC-cceeeecc-cccceeEEEEEEcCCceEE--EEEeCCCeEEEEeCCCCeEEEEecccccCeEEEEEeCCC
Q 047355 168 TIQIWNMDSS-AAKFTLDA-HEKGINCIDYFITSDKVYL--ITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPEL 243 (312)
Q Consensus 168 ~v~iwd~~~~-~~~~~~~~-~~~~v~~~~~~~~~~~~~l--~sg~~dg~i~vwd~~~~~~~~~~~~h~~~i~~l~~~~~~ 243 (312)
...+|-++.. .....+.- ...+|..++| +|++..+ +.|..+..|.+||.+ .+.+..+. ...++.+.|+|+|
T Consensus 38 ~~~l~~~~~~~~~~~~i~l~~~~~I~~~~W--sP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G 112 (194)
T PF08662_consen 38 EFELFYLNEKNIPVESIELKKEGPIHDVAW--SPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDG 112 (194)
T ss_pred eEEEEEEecCCCccceeeccCCCceEEEEE--CcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCC
Confidence 3455555332 22333322 2345888876 4555554 445567899999996 55555553 5678899999999
Q ss_pred cEEEEEeCC---CcEEEEeCCCcceeeecccCccceEEEEEecCCCeEEEEecC
Q 047355 244 RIIITASED---GTILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGCDN 294 (312)
Q Consensus 244 ~~l~s~s~d---g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~ 294 (312)
++|++++.+ |.|.+||.++.+.+.+.... .+..++|+|||++|+++...
T Consensus 113 ~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~--~~t~~~WsPdGr~~~ta~t~ 164 (194)
T PF08662_consen 113 RFLVLAGFGNLNGDLEFWDVRKKKKISTFEHS--DATDVEWSPDGRYLATATTS 164 (194)
T ss_pred CEEEEEEccCCCcEEEEEECCCCEEeeccccC--cEEEEEEcCCCCEEEEEEec
Confidence 999998754 66999999988887776533 46799999999999998864
No 242
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.44 E-value=4.6e-11 Score=98.08 Aligned_cols=239 Identities=11% Similarity=0.080 Sum_probs=168.2
Q ss_pred CCceeEEEEeeCCc--EEEEecCCCeEEEEEccCceeeee------ecccccceeEEEEecCCCEEEEEeCCCcEEEEeC
Q 047355 59 DSPVRTAKFVAREH--WIVCGSDDKFIRVFDYNTMASVKE------FEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDW 130 (312)
Q Consensus 59 ~~~v~~~~~~~~~~--~l~~g~~dg~i~iwd~~~~~~~~~------~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~ 130 (312)
...+..+.|..+++ .+...+.+-.+..+.......... ....+.+|..+... ...|++|-.+|.+.+|..
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~ 132 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRHD 132 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEec
Confidence 34566777765443 333333566666666554433222 23345566666543 346888999999999987
Q ss_pred CCCc---eeeeEecCCccceEEEEeCCCCCCEEEEEeCC--CeEEEEEcCCCcceeeeccc-------ccceeEEEEEEc
Q 047355 131 EKNW---ECTQTFEGHSHYVMQSAFNPKDLNTFASASLD--GTIQIWNMDSSAAKFTLDAH-------EKGINCIDYFIT 198 (312)
Q Consensus 131 ~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d--g~v~iwd~~~~~~~~~~~~~-------~~~v~~~~~~~~ 198 (312)
..+. .....+..+ ..+..+.-.|.....+++|+.. ..+.+||+.+.+.+++-... .-+|...+..+.
T Consensus 133 k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl 211 (412)
T KOG3881|consen 133 KSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFL 211 (412)
T ss_pred cCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceec
Confidence 6332 111222222 3455566667777889999998 88999999887555432211 122332232233
Q ss_pred CC--ceEEEEEeCCCeEEEEeCCCC-eEEEEecccccCeEEEEEeCCCcEEEEEeCCCcEEEEeCCCcceeee-cccCcc
Q 047355 199 SD--KVYLITGSDDFTVKVWDYETK-TCVQILEGHTNNVTAVCFHPELRIIITASEDGTILIWNATTFRLQNT-LSSGLE 274 (312)
Q Consensus 199 ~~--~~~l~sg~~dg~i~vwd~~~~-~~~~~~~~h~~~i~~l~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~-~~~~~~ 274 (312)
+. ...||+++.-+.+++||.+.+ +++..+.--..+|+++...|.++.+++|..-+.+..||.+++++... +.+..+
T Consensus 212 ~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tG 291 (412)
T KOG3881|consen 212 EGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITG 291 (412)
T ss_pred CCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccC
Confidence 33 778999999999999999854 56666766678899999999999999999999999999999988776 777778
Q ss_pred ceEEEEEecCCCeEEEEecCCeEEEE
Q 047355 275 RVWSIGYKKGSNQVAFGCDNGTLIVK 300 (312)
Q Consensus 275 ~v~~~~~~~~~~~l~~~~~~g~i~v~ 300 (312)
.+.++--.|...+||+++-|..++|-
T Consensus 292 sirsih~hp~~~~las~GLDRyvRIh 317 (412)
T KOG3881|consen 292 SIRSIHCHPTHPVLASCGLDRYVRIH 317 (412)
T ss_pred CcceEEEcCCCceEEeeccceeEEEe
Confidence 89999999999999999999999874
No 243
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.43 E-value=2.5e-11 Score=96.19 Aligned_cols=242 Identities=14% Similarity=0.095 Sum_probs=157.2
Q ss_pred cEEEEEEc---CCCC-eEEEEecCCeEEEEeccCCceeeeEEecC------CceeEEEEeeCCcEEEEecCCCeEEEEEc
Q 047355 19 RVKSVDFH---PTQP-WVLASLYSGTVCIWNYHSQTTEKSVKVTD------SPVRTAKFVAREHWIVCGSDDKFIRVFDY 88 (312)
Q Consensus 19 ~i~~~~~~---~~~~-~l~~~~~dg~v~iw~~~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~~g~~dg~i~iwd~ 88 (312)
.+..+.|. .+|. .|+-+-.+|.|.++..+.......++.-. ....++.|.+.+..++++..+|.+.+-+.
T Consensus 71 ~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~ 150 (339)
T KOG0280|consen 71 TEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYE 150 (339)
T ss_pred ccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEec
Confidence 35555554 2455 45566778889988776544333333221 12345677788888999999999885554
Q ss_pred cCce--eeeeecccccceeEEEEecCC-CEEEEEeCCCcEEEEeCCCCceee-eEecCCccceEEEEeCCCCCCEEEEEe
Q 047355 89 NTMA--SVKEFEAHEDYIRSLAVHPTF-PFVLTASDDKLIKLWDWEKNWECT-QTFEGHSHYVMQSAFNPKDLNTFASAS 164 (312)
Q Consensus 89 ~~~~--~~~~~~~h~~~i~~~~~~~~~-~~l~t~s~d~~v~iwd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~s~s 164 (312)
.... ..+.++.|+-++....|+... +++.+||+|+.+..||++-....+ +...-|..-|.++.-+|+.+..+++|+
T Consensus 151 t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGs 230 (339)
T KOG0280|consen 151 TEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGS 230 (339)
T ss_pred ceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEec
Confidence 4443 344789999999999997654 567799999999999998433332 224567888889988998889999999
Q ss_pred CCCeEEEEEcCCCcceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCC--e---EEEEecccccCeEEEEE
Q 047355 165 LDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETK--T---CVQILEGHTNNVTAVCF 239 (312)
Q Consensus 165 ~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~--~---~~~~~~~h~~~i~~l~~ 239 (312)
.|..|++||.++......-..-.++|.-+...+......++++-.+| .++-+.... + .......|.+-...-.|
T Consensus 231 YDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DW 309 (339)
T KOG0280|consen 231 YDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDW 309 (339)
T ss_pred cccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcC-ceEEEecccccchheeeeccccccceeecccc
Confidence 99999999999654322222233566666554433334444444444 344444322 1 33445567776777777
Q ss_pred eCCCcEEEEEe-CCCcEE-EEeCC
Q 047355 240 HPELRIIITAS-EDGTIL-IWNAT 261 (312)
Q Consensus 240 ~~~~~~l~s~s-~dg~v~-iwd~~ 261 (312)
......|||++ .|+.++ +|-.-
T Consensus 310 d~~~~~lATCsFYDk~~~~~Wl~~ 333 (339)
T KOG0280|consen 310 DSKDSFLATCSFYDKKIRQLWLHI 333 (339)
T ss_pred ccccceeeeeeccccceeeeeeec
Confidence 65556788876 466644 66433
No 244
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.43 E-value=1e-10 Score=103.65 Aligned_cols=207 Identities=15% Similarity=0.099 Sum_probs=135.4
Q ss_pred CCeEEEEEccCceeeeeecccccceeEEEEecCCCEEEEEeCC---CcEEEEeCCCCceeeeEecCCccceEEEEeCCCC
Q 047355 80 DKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDD---KLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKD 156 (312)
Q Consensus 80 dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d---~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 156 (312)
...|.++|.+.. ..+.+..+...+.+..|+|++++++.++.+ ..+++||+.+... ..+..+........|+|.+
T Consensus 169 ~~~l~~~d~~g~-~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~--~~~~~~~~~~~~~~~spDg 245 (417)
T TIGR02800 169 RYELQVADYDGA-NPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQR--EKVASFPGMNGAPAFSPDG 245 (417)
T ss_pred cceEEEEcCCCC-CCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE--EEeecCCCCccceEECCCC
Confidence 346778887643 345555666778899999999999877643 4799999876522 1222333445567899865
Q ss_pred CCEEEEEeCCC--eEEEEEcCCCcceeeecccccceeEEEEEEcCCceEEEEEeCC-C--eEEEEeCCCCeEEEEecccc
Q 047355 157 LNTFASASLDG--TIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDD-F--TVKVWDYETKTCVQILEGHT 231 (312)
Q Consensus 157 ~~~~~s~s~dg--~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d-g--~i~vwd~~~~~~~~~~~~h~ 231 (312)
..++++.+.++ .|++||+.+.... .+..+........ +++++..|+..+.. + .|+++|+.+++.. .+..+.
T Consensus 246 ~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~--~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~ 321 (417)
T TIGR02800 246 SKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPS--WSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRG 321 (417)
T ss_pred CEEEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEE--ECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCC
Confidence 44555555554 5888898876543 2333332222333 46788777665543 3 6888888776643 334355
Q ss_pred cCeEEEEEeCCCcEEEEEeCCC---cEEEEeCCCcceeeecccCccceEEEEEecCCCeEEEEecCC
Q 047355 232 NNVTAVCFHPELRIIITASEDG---TILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGCDNG 295 (312)
Q Consensus 232 ~~i~~l~~~~~~~~l~s~s~dg---~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g 295 (312)
..+....|+|++++++.++.++ .|.+||+.+..... +... .......|+||++.|++.+.++
T Consensus 322 ~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~-l~~~-~~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 322 GYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERV-LTDT-GLDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred CCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEeCC
Confidence 6677889999999999888776 78899988754322 2221 2234568999999999887754
No 245
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.42 E-value=3.8e-11 Score=103.42 Aligned_cols=189 Identities=17% Similarity=0.269 Sum_probs=144.9
Q ss_pred cCCCEEEEEeCCCcEEEEeCCCCceeeeEecCCc---c------ceEEEEeCC-------------CCCCEEEEEeCCCe
Q 047355 111 PTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHS---H------YVMQSAFNP-------------KDLNTFASASLDGT 168 (312)
Q Consensus 111 ~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~---~------~v~~~~~~~-------------~~~~~~~s~s~dg~ 168 (312)
|...+++....||.+++||...+. ..+.|.... + ....+.++| .+...++-|...|.
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~-~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQ-LQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred chhheEeecCCCCeEEEEEccCce-eeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 456788999999999999986552 222222110 0 112222232 13456788889999
Q ss_pred EEEEEcCCCcceeeec--ccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEecccccCeEEEEEeCCCcEE
Q 047355 169 IQIWNMDSSAAKFTLD--AHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRII 246 (312)
Q Consensus 169 v~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~i~~l~~~~~~~~l 246 (312)
|.+|+...++....+. .|...|+++.+ ..+-..|-+++.|+.+..|+.......+....-...+.+++.+||++++
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~--~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l 159 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILD--AQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKIL 159 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeec--ccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEE
Confidence 9999999888776664 68888888753 3455678899999999999999999899888888889999999999999
Q ss_pred EEEeCCCcEEEEeCCCcceeeecccCccceEEEEEecC-----CCeEEEEec-CCeEEEEeccC
Q 047355 247 ITASEDGTILIWNATTFRLQNTLSSGLERVWSIGYKKG-----SNQVAFGCD-NGTLIVKIGNS 304 (312)
Q Consensus 247 ~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~~~-~g~i~v~~~~~ 304 (312)
++++ +.|.+||+++.+.+.+|.+|...|.+++|-.+ |+++.++.. +.-+.+|+-++
T Consensus 160 ~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 160 LTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred Eecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 9988 68999999999999999999999999999877 666665544 44466776654
No 246
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.42 E-value=2.2e-08 Score=86.27 Aligned_cols=267 Identities=12% Similarity=0.193 Sum_probs=160.2
Q ss_pred EEEEecC----CeEEEEecc--CCceeeeE-EecCCceeEEEEeeCCcEEEEecC----CCeEEEEEccCc--e--eeee
Q 047355 32 VLASLYS----GTVCIWNYH--SQTTEKSV-KVTDSPVRTAKFVAREHWIVCGSD----DKFIRVFDYNTM--A--SVKE 96 (312)
Q Consensus 32 l~~~~~d----g~v~iw~~~--~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~g~~----dg~i~iwd~~~~--~--~~~~ 96 (312)
+++|+.. +.|.+|+++ +++..... ......-.-+++++++++|++..+ ++.|..|++... . .+..
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~ 81 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS 81 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence 4556655 789988883 33322111 112333455778999999998876 579999988764 2 2233
Q ss_pred ecccccceeEEEEecCCCEEEEEe-CCCcEEEEeCCCCceeee---Eec----------CCccceEEEEeCCCCCCEEEE
Q 047355 97 FEAHEDYIRSLAVHPTFPFVLTAS-DDKLIKLWDWEKNWECTQ---TFE----------GHSHYVMQSAFNPKDLNTFAS 162 (312)
Q Consensus 97 ~~~h~~~i~~~~~~~~~~~l~t~s-~d~~v~iwd~~~~~~~~~---~~~----------~~~~~v~~~~~~~~~~~~~~s 162 (312)
.......-..++++|++++++++. .+|.+.++++........ .+. ......-.+.++|.+...+++
T Consensus 82 ~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~ 161 (345)
T PF10282_consen 82 VPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVP 161 (345)
T ss_dssp EEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEE
T ss_pred eccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEE
Confidence 332233456789999999998876 489999999876422211 110 112334567888854334444
Q ss_pred EeCCCeEEEEEcCCCcc-e---eeec-ccccceeEEEEEEcCCceEE-EEEeCCCeEEEEeCC--CCeE--EEEeccc--
Q 047355 163 ASLDGTIQIWNMDSSAA-K---FTLD-AHEKGINCIDYFITSDKVYL-ITGSDDFTVKVWDYE--TKTC--VQILEGH-- 230 (312)
Q Consensus 163 ~s~dg~v~iwd~~~~~~-~---~~~~-~~~~~v~~~~~~~~~~~~~l-~sg~~dg~i~vwd~~--~~~~--~~~~~~h-- 230 (312)
.-....|++|+++.... + ..+. ....+..-+. +++++.++ +....+++|.++++. ++.. .+.+...
T Consensus 162 dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~--f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~ 239 (345)
T PF10282_consen 162 DLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLA--FSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPE 239 (345)
T ss_dssp ETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEE--E-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCET
T ss_pred ecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEE--EcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccc
Confidence 44456899999976552 1 1111 1223344554 46776655 455568889999887 4432 2222211
Q ss_pred ----ccCeEEEEEeCCCcEEEEEe-CCCcEEEEeCC--Ccc--eeeecccCccceEEEEEecCCCeEEEEec-CCeEEEE
Q 047355 231 ----TNNVTAVCFHPELRIIITAS-EDGTILIWNAT--TFR--LQNTLSSGLERVWSIGYKKGSNQVAFGCD-NGTLIVK 300 (312)
Q Consensus 231 ----~~~i~~l~~~~~~~~l~s~s-~dg~v~iwd~~--~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~g~i~v~ 300 (312)
......|+++|++++|.+.. ..+.|.+|++. +++ .+..+.........++++|+|++|+++.. ++.|.+.
T Consensus 240 ~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf 319 (345)
T PF10282_consen 240 GFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVF 319 (345)
T ss_dssp TSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEE
T ss_pred cccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEE
Confidence 12578899999999876554 56789999983 233 33444444455889999999999998875 4555543
No 247
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.40 E-value=2.4e-11 Score=98.22 Aligned_cols=243 Identities=19% Similarity=0.330 Sum_probs=163.8
Q ss_pred ccCcEEEEEEcCCCCeEEEEecCCeEEEEec----cCCceeeeEEecCCceeEEEEeeCCcEEEEecCCCeEEEEE-c--
Q 047355 16 KSDRVKSVDFHPTQPWVLASLYSGTVCIWNY----HSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFD-Y-- 88 (312)
Q Consensus 16 ~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd-~-- 88 (312)
...++.++++++...+|+.|-..|++.-+.+ ++....+....|...+..+.|....+++++.+.|..+ .|- .
T Consensus 67 mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~-~~hc~e~ 145 (404)
T KOG1409|consen 67 MPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQF-AWHCTES 145 (404)
T ss_pred CCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccce-EEEeecc
Confidence 3578999999999999999999999998854 3344445555677778888887777777777766543 221 0
Q ss_pred ---------------------------------------cCceeeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEe
Q 047355 89 ---------------------------------------NTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWD 129 (312)
Q Consensus 89 ---------------------------------------~~~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd 129 (312)
.....+..+.+|.+++.++.|.|....+.+|..|..+.+||
T Consensus 146 ~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wd 225 (404)
T KOG1409|consen 146 GNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWD 225 (404)
T ss_pred CCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEe
Confidence 11123456678999999999999999999999999999999
Q ss_pred CCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeCCCeEEEEEcCCCccee---e------------------------
Q 047355 130 WEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKF---T------------------------ 182 (312)
Q Consensus 130 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~---~------------------------ 182 (312)
+...........+|.+.|..+.+-+ ....+.+++.||.|-+||++...... .
T Consensus 226 igg~~g~~~el~gh~~kV~~l~~~~-~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~ 304 (404)
T KOG1409|consen 226 IGGRKGTAYELQGHNDKVQALSYAQ-HTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQ 304 (404)
T ss_pred ccCCcceeeeeccchhhhhhhhhhh-hheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhh
Confidence 9776666677888888888777665 34689999999999999987532110 0
Q ss_pred --eccc-c---cceeEEEEEEcCCceEEEEEeCCCeEEEEeCC-------CCeEEEEecccccCeEEEEEeCCCcEEEEE
Q 047355 183 --LDAH-E---KGINCIDYFITSDKVYLITGSDDFTVKVWDYE-------TKTCVQILEGHTNNVTAVCFHPELRIIITA 249 (312)
Q Consensus 183 --~~~~-~---~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~-------~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~ 249 (312)
+..| - +...|.. .+.+.....+-+..-.+++-|.- +..++.....-...|+.+.+..+..+|+|+
T Consensus 305 ~glr~h~crkcg~avc~~--c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqetlglLvTs 382 (404)
T KOG1409|consen 305 LGLRQHHCRKCGKAVCGK--CSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQETLGLLVTS 382 (404)
T ss_pred hhhhhhhhhhhhhhcCcc--cccCccccccccceeEEEEecccchhhhcCCCCccccccccccceeEEEhhhhccceeec
Confidence 0000 0 0001110 11111122222333345554431 112233332223359999999888999999
Q ss_pred eCCCcEEEEeCCC
Q 047355 250 SEDGTILIWNATT 262 (312)
Q Consensus 250 s~dg~v~iwd~~~ 262 (312)
+.|+.|+|||++.
T Consensus 383 G~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 383 GTDRVIKIWDVRS 395 (404)
T ss_pred CCceEEEEEechh
Confidence 9999999999864
No 248
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.39 E-value=3.2e-10 Score=100.46 Aligned_cols=229 Identities=15% Similarity=0.133 Sum_probs=139.5
Q ss_pred eEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEecCC---CeEEEEEccCceeeeeecccccceeEEEEecCCCEE
Q 047355 40 TVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDD---KFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFV 116 (312)
Q Consensus 40 ~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d---g~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~l 116 (312)
.|.++|.+.... +.+..+...+....|++++++|+....+ ..|++||+.++... .+..+...+.+++|+|+++.|
T Consensus 171 ~l~~~d~~g~~~-~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~-~~~~~~~~~~~~~~spDg~~l 248 (417)
T TIGR02800 171 ELQVADYDGANP-QTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQRE-KVASFPGMNGAPAFSPDGSKL 248 (417)
T ss_pred eEEEEcCCCCCC-EEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEE-EeecCCCCccceEECCCCCEE
Confidence 577888764443 3444455568888999999998876543 48999999876443 333455567778999999877
Q ss_pred E-EEeCCC--cEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeC-CC--eEEEEEcCCCcceeeecccccce
Q 047355 117 L-TASDDK--LIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASL-DG--TIQIWNMDSSAAKFTLDAHEKGI 190 (312)
Q Consensus 117 ~-t~s~d~--~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~-dg--~v~iwd~~~~~~~~~~~~~~~~v 190 (312)
+ +.+.++ .+.+||+.+.. ...+..+........|+|. +..++..+. ++ .|.++|+.+.+.. .+..+....
T Consensus 249 ~~~~~~~~~~~i~~~d~~~~~--~~~l~~~~~~~~~~~~s~d-g~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~ 324 (417)
T TIGR02800 249 AVSLSKDGNPDIYVMDLDGKQ--LTRLTNGPGIDTEPSWSPD-GKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYN 324 (417)
T ss_pred EEEECCCCCccEEEEECCCCC--EEECCCCCCCCCCEEECCC-CCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCc
Confidence 6 444444 57788876542 2223333333345678874 455554443 33 5777787765432 333233333
Q ss_pred eEEEEEEcCCceEEEEEeCCC---eEEEEeCCCCeEEEEecccccCeEEEEEeCCCcEEEEEeCCC---cEEEEeCCCcc
Q 047355 191 NCIDYFITSDKVYLITGSDDF---TVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITASEDG---TILIWNATTFR 264 (312)
Q Consensus 191 ~~~~~~~~~~~~~l~sg~~dg---~i~vwd~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~s~dg---~v~iwd~~~~~ 264 (312)
.... +++++.+++..+.++ .|.+||+.++... .+... .......|+|+++.|+..+.++ .+.+.+. +++
T Consensus 325 ~~~~--~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~-~g~ 399 (417)
T TIGR02800 325 ASPS--WSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVST-DGR 399 (417)
T ss_pred cCeE--ECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEEC-CCc
Confidence 3333 578888888877765 7899998876543 33322 2344668999999888777654 3555553 344
Q ss_pred eeeecccCccceEEE
Q 047355 265 LQNTLSSGLERVWSI 279 (312)
Q Consensus 265 ~~~~~~~~~~~v~~~ 279 (312)
....+..+...+..+
T Consensus 400 ~~~~~~~~~g~~~~~ 414 (417)
T TIGR02800 400 FRARLPLGNGDVREP 414 (417)
T ss_pred eeeECCCCCCCcCCC
Confidence 444443333333333
No 249
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.39 E-value=9.7e-09 Score=86.95 Aligned_cols=262 Identities=12% Similarity=0.092 Sum_probs=161.1
Q ss_pred CCCeEEEEecC-----CeEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEecC----------CCeEEEEEccCce
Q 047355 28 TQPWVLASLYS-----GTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSD----------DKFIRVFDYNTMA 92 (312)
Q Consensus 28 ~~~~l~~~~~d-----g~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~----------dg~i~iwd~~~~~ 92 (312)
++.+++..... ++|.+.|.++.+.+..+.....+-. + ++++++.|+.+.. +..|.+||..+.+
T Consensus 11 ~~~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~ 88 (352)
T TIGR02658 11 DARRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHL 88 (352)
T ss_pred CCCEEEEECCcccccCceEEEEECCCCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCc
Confidence 44555554433 8999999999888887776555543 3 8999998887655 7899999999999
Q ss_pred eeeeeccccc-------ceeEEEEecCCCEEEEEe-C-CCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEE
Q 047355 93 SVKEFEAHED-------YIRSLAVHPTFPFVLTAS-D-DKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASA 163 (312)
Q Consensus 93 ~~~~~~~h~~-------~i~~~~~~~~~~~l~t~s-~-d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~ 163 (312)
...++....+ .-..++++|++++++... . +..|-+.|+... +....+.-.... ..|.. ....+.+-
T Consensus 89 ~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~-kvv~ei~vp~~~---~vy~t-~e~~~~~~ 163 (352)
T TIGR02658 89 PIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGK-AFVRMMDVPDCY---HIFPT-ANDTFFMH 163 (352)
T ss_pred EEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCC-cEEEEEeCCCCc---EEEEe-cCCccEEE
Confidence 8887764322 234688999999988665 3 789999998765 323322211111 11111 11223333
Q ss_pred eCCCeEEEEEcCCCcceee-----ecccccceeEE-EEEEcCCceEEEEEeCCCeEEEEeCCCC-----eEEEEecc---
Q 047355 164 SLDGTIQIWNMDSSAAKFT-----LDAHEKGINCI-DYFITSDKVYLITGSDDFTVKVWDYETK-----TCVQILEG--- 229 (312)
Q Consensus 164 s~dg~v~iwd~~~~~~~~~-----~~~~~~~v~~~-~~~~~~~~~~l~sg~~dg~i~vwd~~~~-----~~~~~~~~--- 229 (312)
+.||......+........ +......+..- .+ ...++.++....+ |+|.+.|+... +....+..
T Consensus 164 ~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~-~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~ 241 (352)
T TIGR02658 164 CRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAY-SNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEK 241 (352)
T ss_pred eecCceEEEEecCCCceEEeeeeeecCCccccccCCce-EcCCCcEEEEecC-CeEEEEecCCCcceecceeeecccccc
Confidence 4566655544433211110 11100000000 11 1226666666555 99999995432 22222211
Q ss_pred ----cccCeEEEEEeCCCcEEEEEe----------CCCcEEEEeCCCcceeeecccCccceEEEEEecCCC-eEEEEe-c
Q 047355 230 ----HTNNVTAVCFHPELRIIITAS----------EDGTILIWNATTFRLQNTLSSGLERVWSIGYKKGSN-QVAFGC-D 293 (312)
Q Consensus 230 ----h~~~i~~l~~~~~~~~l~s~s----------~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~-~ 293 (312)
..+.+.-++++|+++.++... ..++|.++|..+++.+..+.. ..+++.++++||++ .|.+.. .
T Consensus 242 ~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~ 320 (352)
T TIGR02658 242 ADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTG 320 (352)
T ss_pred ccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCC
Confidence 123344599999998887743 225899999999998887764 35899999999999 777666 3
Q ss_pred CCeEEE
Q 047355 294 NGTLIV 299 (312)
Q Consensus 294 ~g~i~v 299 (312)
++.|.|
T Consensus 321 s~~VsV 326 (352)
T TIGR02658 321 DKTLYI 326 (352)
T ss_pred CCcEEE
Confidence 565554
No 250
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.38 E-value=3.8e-09 Score=89.40 Aligned_cols=241 Identities=12% Similarity=0.146 Sum_probs=146.0
Q ss_pred EcCCCCeEEEEec----------CCeEEEEeccCCceeeeEEecCCc-------eeEEEEeeCCcEEEEec-C-CCeEEE
Q 047355 25 FHPTQPWVLASLY----------SGTVCIWNYHSQTTEKSVKVTDSP-------VRTAKFVAREHWIVCGS-D-DKFIRV 85 (312)
Q Consensus 25 ~~~~~~~l~~~~~----------dg~v~iw~~~~~~~~~~~~~~~~~-------v~~~~~~~~~~~l~~g~-~-dg~i~i 85 (312)
++||++.|+++.. +..|.+||..+.+....+.....| -....+++++++|+... . +..|-+
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V 132 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV 132 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence 8999998887755 789999999999888877654331 23567899999999776 3 689999
Q ss_pred EEccCceeeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCcee----eeEecCCccceEE-EEeCCCCCCEE
Q 047355 86 FDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWEC----TQTFEGHSHYVMQ-SAFNPKDLNTF 160 (312)
Q Consensus 86 wd~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~----~~~~~~~~~~v~~-~~~~~~~~~~~ 160 (312)
.|+.+.+.+.++.... ...-+.. +...+.+- +.||...........+. ...+.....++.. -.|.+.++..+
T Consensus 133 vD~~~~kvv~ei~vp~-~~~vy~t-~e~~~~~~-~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~ 209 (352)
T TIGR02658 133 VDLEGKAFVRMMDVPD-CYHIFPT-ANDTFFMH-CRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLV 209 (352)
T ss_pred EECCCCcEEEEEeCCC-CcEEEEe-cCCccEEE-eecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEE
Confidence 9999998887775422 1111111 11111111 12333222221111010 0111111111111 12344344555
Q ss_pred EEEeCCCeEEEEEcCCCcce-----eeeccc-------ccceeEEEEEEcCCceEEEEEe----------CCCeEEEEeC
Q 047355 161 ASASLDGTIQIWNMDSSAAK-----FTLDAH-------EKGINCIDYFITSDKVYLITGS----------DDFTVKVWDY 218 (312)
Q Consensus 161 ~s~s~dg~v~iwd~~~~~~~-----~~~~~~-------~~~v~~~~~~~~~~~~~l~sg~----------~dg~i~vwd~ 218 (312)
....+ |+|.+.|+...... ..+... ..+...++ .++++..+.... ..++|.++|.
T Consensus 210 ~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia--~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~ 286 (352)
T TIGR02658 210 WPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVA--YHRARDRIYLLADQRAKWTHKTASRFLFVVDA 286 (352)
T ss_pred EEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEE--EcCCCCEEEEEecCCccccccCCCCEEEEEEC
Confidence 55554 99999997543221 111111 11222344 455655555421 2258999999
Q ss_pred CCCeEEEEecccccCeEEEEEeCCCc-EEEEEe-CCCcEEEEeCCCcceeeecccC
Q 047355 219 ETKTCVQILEGHTNNVTAVCFHPELR-IIITAS-EDGTILIWNATTFRLQNTLSSG 272 (312)
Q Consensus 219 ~~~~~~~~~~~h~~~i~~l~~~~~~~-~l~s~s-~dg~v~iwd~~~~~~~~~~~~~ 272 (312)
++++.+..+.. ...+..++++||++ +|++.. .++.|.++|..+++.+.++...
T Consensus 287 ~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~~v 341 (352)
T TIGR02658 287 KTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVNQL 341 (352)
T ss_pred CCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeeccC
Confidence 99999888763 45789999999999 777666 6788999999999988887443
No 251
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.38 E-value=2.5e-10 Score=98.53 Aligned_cols=211 Identities=16% Similarity=0.161 Sum_probs=144.1
Q ss_pred cCCCCeEEEEecCCeEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEecCCCeEEEEEccCceeeeeeccccccee
Q 047355 26 HPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIR 105 (312)
Q Consensus 26 ~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~ 105 (312)
.|...++|....||.+++|+....+....|.... ..+..++-..|.+.-....++...-. ...
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~----------------~~s~t~~~~~w~L~~~~s~~k~~~~~-~~~ 64 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIA----------------SLSGTCTYTKWGLSADYSPMKWLSLE-KAK 64 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccch----------------hccCcceeEEEEEEeccchHHHHhHH-HHh
Confidence 3556788899999999999988776655443211 11222333444432111111110000 011
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEe--cCCccceEEEEeCCCCCCEEEEEeCCCeEEEEEcCCCcceeee
Q 047355 106 SLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTF--EGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTL 183 (312)
Q Consensus 106 ~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~ 183 (312)
..+.+-.+++-|...|.|.+|++..+. ....+ ..|.+.|....++. +...+.+++.|+.+..|+..........
T Consensus 65 --~~s~~t~~lvlgt~~g~v~~ys~~~g~-it~~~st~~h~~~v~~~~~~~-~~~ciyS~~ad~~v~~~~~~~~~~~~~~ 140 (541)
T KOG4547|consen 65 --KASLDTSMLVLGTPQGSVLLYSVAGGE-ITAKLSTDKHYGNVNEILDAQ-RLGCIYSVGADLKVVYILEKEKVIIRIW 140 (541)
T ss_pred --hccCCceEEEeecCCccEEEEEecCCe-EEEEEecCCCCCcceeeeccc-ccCceEecCCceeEEEEecccceeeeee
Confidence 112344567778888999999987663 33333 46888888887764 5678999999999999999888777666
Q ss_pred cccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEecccccCeEEEEEeCC-----CcE-EEEEeCCCcEEE
Q 047355 184 DAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPE-----LRI-IITASEDGTILI 257 (312)
Q Consensus 184 ~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~i~~l~~~~~-----~~~-l~s~s~dg~v~i 257 (312)
.+.+..+..++ +++|+..+++++ +.|++||+++++.+..+.+|.++|+++.|--. |.+ |.+...+..+.+
T Consensus 141 ~~~~~~~~sl~--is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~ 216 (541)
T KOG4547|consen 141 KEQKPLVSSLC--ISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITV 216 (541)
T ss_pred ccCCCccceEE--EcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeE
Confidence 66555556554 578899888876 88999999999999999999999999999766 444 445556677888
Q ss_pred EeCC
Q 047355 258 WNAT 261 (312)
Q Consensus 258 wd~~ 261 (312)
|-..
T Consensus 217 w~v~ 220 (541)
T KOG4547|consen 217 WVVE 220 (541)
T ss_pred EEEE
Confidence 8654
No 252
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.38 E-value=8.6e-10 Score=98.06 Aligned_cols=235 Identities=13% Similarity=0.088 Sum_probs=140.9
Q ss_pred eEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEecCC---CeEEEEEccCceeeeeecccccceeEEEEecCCCEE
Q 047355 40 TVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDD---KFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFV 116 (312)
Q Consensus 40 ~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d---g~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~l 116 (312)
.|.++|.+.... +.+..+...+....|+|+++.|+..+.+ ..|.+|++++++.. .+....+.+....|+|+++.|
T Consensus 180 ~l~~~d~~g~~~-~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~-~l~~~~g~~~~~~~SpDG~~l 257 (430)
T PRK00178 180 TLQRSDYDGARA-VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRRE-QITNFEGLNGAPAWSPDGSKL 257 (430)
T ss_pred EEEEECCCCCCc-eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEE-EccCCCCCcCCeEECCCCCEE
Confidence 477778775543 3444455678888999999988765533 46889999876543 233333445578999999987
Q ss_pred E-EEeCCC--cEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeCCC--eEEEEEcCCCcceeeeccccccee
Q 047355 117 L-TASDDK--LIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDG--TIQIWNMDSSAAKFTLDAHEKGIN 191 (312)
Q Consensus 117 ~-t~s~d~--~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg--~v~iwd~~~~~~~~~~~~~~~~v~ 191 (312)
+ +.+.++ .+.+||+.... ...+..+........|+|.+..++++...++ .|.++|+.+++....... .....
T Consensus 258 a~~~~~~g~~~Iy~~d~~~~~--~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~-~~~~~ 334 (430)
T PRK00178 258 AFVLSKDGNPEIYVMDLASRQ--LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFV-GNYNA 334 (430)
T ss_pred EEEEccCCCceEEEEECCCCC--eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecC-CCCcc
Confidence 6 445555 57777876542 2233334444455678885533444443344 577777766654322111 11111
Q ss_pred EEEEEEcCCceEEEEEeCC-C--eEEEEeCCCCeEEEEecccccCeEEEEEeCCCcEEEEEeCC---CcEEEEeCCCcce
Q 047355 192 CIDYFITSDKVYLITGSDD-F--TVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITASED---GTILIWNATTFRL 265 (312)
Q Consensus 192 ~~~~~~~~~~~~l~sg~~d-g--~i~vwd~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~s~d---g~v~iwd~~~~~~ 265 (312)
.. .+++++.+++..+.+ + .|.+||+.+++....... .......|+|++++++..+.+ ..+.+++.. ++.
T Consensus 335 ~~--~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~--~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~-g~~ 409 (430)
T PRK00178 335 RP--RLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDT--SLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN-GRV 409 (430)
T ss_pred ce--EECCCCCEEEEEEccCCceEEEEEECCCCCEEEccCC--CCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCc
Confidence 22 347888888766543 2 588899987765333222 222356899999988776654 346667764 344
Q ss_pred eeecccCccceEEEEEecC
Q 047355 266 QNTLSSGLERVWSIGYKKG 284 (312)
Q Consensus 266 ~~~~~~~~~~v~~~~~~~~ 284 (312)
...+..+...+...+|+|-
T Consensus 410 ~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 410 RLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred eEECcCCCCCcCCCccCCC
Confidence 4444444556667777764
No 253
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.36 E-value=7e-10 Score=98.65 Aligned_cols=234 Identities=15% Similarity=0.096 Sum_probs=139.0
Q ss_pred eEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEecC-C--CeEEEEEccCceeeeeecccccceeEEEEecCCCEE
Q 047355 40 TVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSD-D--KFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFV 116 (312)
Q Consensus 40 ~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~-d--g~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~l 116 (312)
.+.++|.+.... +.+......+....|+|++++|+..+. + ..|.+||+.+++.. .+....+.....+|+|+++.|
T Consensus 199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~-~lt~~~g~~~~~~wSPDG~~L 276 (448)
T PRK04792 199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVRE-KVTSFPGINGAPRFSPDGKKL 276 (448)
T ss_pred EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeE-EecCCCCCcCCeeECCCCCEE
Confidence 566677765443 344445567888999999998886543 3 36888898876532 222222334578999999987
Q ss_pred EE-EeCCCc--EEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeCCC--eEEEEEcCCCcceee-ecccccce
Q 047355 117 LT-ASDDKL--IKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDG--TIQIWNMDSSAAKFT-LDAHEKGI 190 (312)
Q Consensus 117 ~t-~s~d~~--v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg--~v~iwd~~~~~~~~~-~~~~~~~v 190 (312)
+. .+.++. |.++|+.... ...+..+........|+|.+..++++...++ .|.++|+.+++.... ..++. .
T Consensus 277 a~~~~~~g~~~Iy~~dl~tg~--~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~--~ 352 (448)
T PRK04792 277 ALVLSKDGQPEIYVVDIATKA--LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQ--N 352 (448)
T ss_pred EEEEeCCCCeEEEEEECCCCC--eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCC--C
Confidence 64 566675 6666765442 2333334444566789986543444444444 466667766553322 22221 1
Q ss_pred eEEEEEEcCCceEEEEEeC-CC--eEEEEeCCCCeEEEEecccccCeEEEEEeCCCcEEEEEeCC-C--cEEEEeCCCcc
Q 047355 191 NCIDYFITSDKVYLITGSD-DF--TVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITASED-G--TILIWNATTFR 264 (312)
Q Consensus 191 ~~~~~~~~~~~~~l~sg~~-dg--~i~vwd~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~s~d-g--~v~iwd~~~~~ 264 (312)
.... +++||.+++..+. ++ .|.++|+.+++... +.... ......|+|+++.|+..+.+ + .+.+++. +++
T Consensus 353 ~~~~--~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~~-~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~ 427 (448)
T PRK04792 353 LGGS--ITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTSTR-LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGR 427 (448)
T ss_pred cCee--ECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCCC-CCCCceECCCCCEEEEEEecCCceEEEEEEC-CCC
Confidence 2223 4788877766554 33 46667887776533 32221 12245899999987765543 3 3667776 455
Q ss_pred eeeecccCccceEEEEEecC
Q 047355 265 LQNTLSSGLERVWSIGYKKG 284 (312)
Q Consensus 265 ~~~~~~~~~~~v~~~~~~~~ 284 (312)
....+..+...+...+|+|-
T Consensus 428 ~~~~l~~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 428 FKARLPAGQGEVKSPAWSPF 447 (448)
T ss_pred ceEECcCCCCCcCCCccCCC
Confidence 66666555566677778763
No 254
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.36 E-value=5e-09 Score=91.55 Aligned_cols=258 Identities=13% Similarity=0.066 Sum_probs=152.2
Q ss_pred CCCeEEEEecCCeEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEecCCCeEEEEEccCceeeeeecccccce---
Q 047355 28 TQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYI--- 104 (312)
Q Consensus 28 ~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i--- 104 (312)
++..+++++.+|.+..+|..+++..-...... .+...-.. .+..++.++.++.+..||.++++.+-+++.....+
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~ 181 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSS-EVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLR 181 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccCc-eeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeec
Confidence 35567777778888888877666554433222 11111111 24567778888999999998887655543322111
Q ss_pred --eEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEecCC-----cc--ceEEEEeCC-CCCCEEEEEeCCCeEEEEEc
Q 047355 105 --RSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGH-----SH--YVMQSAFNP-KDLNTFASASLDGTIQIWNM 174 (312)
Q Consensus 105 --~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~-----~~--~v~~~~~~~-~~~~~~~s~s~dg~v~iwd~ 174 (312)
.+..+. +..++.+..++.+..+|.+++... ...... .. ......-.| -....++.++.+|.++.||.
T Consensus 182 ~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~-W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~ 258 (377)
T TIGR03300 182 GSASPVIA--DGGVLVGFAGGKLVALDLQTGQPL-WEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDL 258 (377)
T ss_pred CCCCCEEE--CCEEEEECCCCEEEEEEccCCCEe-eeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEEC
Confidence 111111 235677888899999987665322 111100 00 000000011 02357788888999999999
Q ss_pred CCCcceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEeccccc-CeEEEEEeCCCcEEEEEeCCC
Q 047355 175 DSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTN-NVTAVCFHPELRIIITASEDG 253 (312)
Q Consensus 175 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~-~i~~l~~~~~~~~l~s~s~dg 253 (312)
.+++......... ..... ..+..+..++.||.|..+|..+++.+........ ...+... .+..+++++.+|
T Consensus 259 ~tG~~~W~~~~~~--~~~p~----~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G 330 (377)
T TIGR03300 259 RSGRVLWKRDASS--YQGPA----VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEG 330 (377)
T ss_pred CCCcEEEeeccCC--ccCce----EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCC
Confidence 9887665543211 11111 1234566778899999999998877654422111 1222222 356788999999
Q ss_pred cEEEEeCCCcceeeecccCccceEEEEEecCCCeEEEEecCCeEEE
Q 047355 254 TILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGCDNGTLIV 299 (312)
Q Consensus 254 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~v 299 (312)
.|+++|..+++++.++..+...++.--.-.+ +.|..++.||.|+.
T Consensus 331 ~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~-~~l~v~~~dG~l~~ 375 (377)
T TIGR03300 331 YLHWLSREDGSFVARLKTDGSGIASPPVVVG-DGLLVQTRDGDLYA 375 (377)
T ss_pred EEEEEECCCCCEEEEEEcCCCccccCCEEEC-CEEEEEeCCceEEE
Confidence 9999999999998877755443333222233 46888999998874
No 255
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.34 E-value=1.7e-11 Score=95.55 Aligned_cols=149 Identities=17% Similarity=0.285 Sum_probs=100.9
Q ss_pred CCCeEEEEecCCeEEEEeccCCcee-eeEEecCCceeEEEEeeCCcEEEEecC-----CCeEEEEEccCceeeeeecccc
Q 047355 28 TQPWVLASLYSGTVCIWNYHSQTTE-KSVKVTDSPVRTAKFVAREHWIVCGSD-----DKFIRVFDYNTMASVKEFEAHE 101 (312)
Q Consensus 28 ~~~~l~~~~~dg~v~iw~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~g~~-----dg~i~iwd~~~~~~~~~~~~h~ 101 (312)
-++.++++..||.+.+++.+..... .........-.+.++...++.+.++.- -+..++|+++..+....-..-.
T Consensus 100 ~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~ 179 (319)
T KOG4714|consen 100 TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKAL 179 (319)
T ss_pred cCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccccccccccc
Confidence 3577899999999999987642111 011111111122233344555554431 2345666665543222222223
Q ss_pred cceeEEEEecCCC-EEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeCCCeEEEEEcCC
Q 047355 102 DYIRSLAVHPTFP-FVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDS 176 (312)
Q Consensus 102 ~~i~~~~~~~~~~-~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~ 176 (312)
+.|.+++-+|..+ .++.|+.||.+-+||++....+...+..|...+..+.|+|+++..|+++++||.+..||..+
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 4489999999765 45688899999999998776667778899999999999999999999999999999999865
No 256
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.34 E-value=8.7e-12 Score=119.22 Aligned_cols=199 Identities=19% Similarity=0.298 Sum_probs=153.4
Q ss_pred cCCceeEEEEeeCCcEEEEecCCCeEEEEEccCceeeeeec-ccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCcee
Q 047355 58 TDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFE-AHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWEC 136 (312)
Q Consensus 58 ~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~ 136 (312)
+-..+....-+|...+.++|+.||.+++|....+..+..++ .....|+.+.|+.+|+.+..+..||.+-+|.... .+
T Consensus 2207 ~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~p--k~ 2284 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASP--KP 2284 (2439)
T ss_pred ccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCC--cc
Confidence 33456666667778899999999999999988776665553 2237789999999999999999999999998763 44
Q ss_pred eeEecCCccceEEEEeCCCCCCEEEEE---eCCCeEEEEEcCCCcce-eeecccccceeEEEEEEcCCceEEEEEeCCCe
Q 047355 137 TQTFEGHSHYVMQSAFNPKDLNTFASA---SLDGTIQIWNMDSSAAK-FTLDAHEKGINCIDYFITSDKVYLITGSDDFT 212 (312)
Q Consensus 137 ~~~~~~~~~~v~~~~~~~~~~~~~~s~---s~dg~v~iwd~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~ 212 (312)
....+.|........|-. ..+++. +.++.+.+||..-.... ..-.+|..+++++.+. |....+++|+.+|.
T Consensus 2285 ~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~--P~~qllisggr~G~ 2359 (2439)
T KOG1064|consen 2285 YTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYA--PKHQLLISGGRKGE 2359 (2439)
T ss_pred eeccccCCccccceeeee---hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEc--CcceEEEecCCcCc
Confidence 555677777776677653 345554 45778999997543221 1127899999999874 56789999999999
Q ss_pred EEEEeCCCCeEEEEecccccCeEEEEEeCCCcEEEEEeCCCcEEEEeCCCcceeeecccCc
Q 047355 213 VKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITASEDGTILIWNATTFRLQNTLSSGL 273 (312)
Q Consensus 213 i~vwd~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~ 273 (312)
|.+||++..++++.++. ++ ...++++|+..|.++||++....+++++....
T Consensus 2360 v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ 2410 (2439)
T KOG1064|consen 2360 VCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEH 2410 (2439)
T ss_pred EEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhcCchhh
Confidence 99999998888776664 44 56789999999999999999988888776543
No 257
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.34 E-value=2.1e-09 Score=94.97 Aligned_cols=242 Identities=12% Similarity=0.076 Sum_probs=139.7
Q ss_pred CeEEEEeccCCceeeeEEecCCceeEEEEeeCCcEE---EEecCC--CeEEEEEccCceeeeeecccccceeEEEEecCC
Q 047355 39 GTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWI---VCGSDD--KFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTF 113 (312)
Q Consensus 39 g~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l---~~g~~d--g~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~ 113 (312)
..|.+.|.+..... .+.........-.|+||++.+ ++...+ ..|.+.++.+++.. .+....+.....+|+|+|
T Consensus 165 ~~l~~~d~dG~~~~-~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~-~lt~~~g~~~~p~wSPDG 242 (428)
T PRK01029 165 GELWSVDYDGQNLR-PLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK-KILALQGNQLMPTFSPRK 242 (428)
T ss_pred ceEEEEcCCCCCce-EcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce-EeecCCCCccceEECCCC
Confidence 35667777655443 333344456677999998752 244444 45777788766532 222233344567899999
Q ss_pred CEEEEEeC-CC----cEEEEeCCCC--ceeeeEecCCccceEEEEeCCCCCCEEEEEeCCCeEEEEE--cCC-Ccceeee
Q 047355 114 PFVLTASD-DK----LIKLWDWEKN--WECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWN--MDS-SAAKFTL 183 (312)
Q Consensus 114 ~~l~t~s~-d~----~v~iwd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd--~~~-~~~~~~~ 183 (312)
+.|+..+. +| .+..|++... ..................|+|.+..++.+...+|..++|. +.. ......+
T Consensus 243 ~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~l 322 (428)
T PRK01029 243 KLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLL 322 (428)
T ss_pred CEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEe
Confidence 98876553 33 2344665431 1222222222223345689985533444444567555554 432 2223334
Q ss_pred cccccceeEEEEEEcCCceEEEEEeCC---CeEEEEeCCCCeEEEEecccccCeEEEEEeCCCcEEEEEeC---CCcEEE
Q 047355 184 DAHEKGINCIDYFITSDKVYLITGSDD---FTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITASE---DGTILI 257 (312)
Q Consensus 184 ~~~~~~v~~~~~~~~~~~~~l~sg~~d---g~i~vwd~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~s~---dg~v~i 257 (312)
..+...+.... ++|||.+|+..+.+ ..|.+||+.+++...... ....+....|+||++.|+..+. ...|.+
T Consensus 323 t~~~~~~~~p~--wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~-~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~ 399 (428)
T PRK01029 323 TKKYRNSSCPA--WSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTT-SPENKESPSWAIDSLHLVYSAGNSNESELYL 399 (428)
T ss_pred ccCCCCcccee--ECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccC-CCCCccceEECCCCCEEEEEECCCCCceEEE
Confidence 33333344444 57888888765543 469999998887654433 3345678999999998775443 346888
Q ss_pred EeCCCcceeeecccCccceEEEEEecCCC
Q 047355 258 WNATTFRLQNTLSSGLERVWSIGYKKGSN 286 (312)
Q Consensus 258 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 286 (312)
+|+.+++... +......+...+|+|-..
T Consensus 400 vdl~~g~~~~-Lt~~~g~~~~p~Ws~~~~ 427 (428)
T PRK01029 400 ISLITKKTRK-IVIGSGEKRFPSWGAFPS 427 (428)
T ss_pred EECCCCCEEE-eecCCCcccCceecCCCC
Confidence 8987765433 333444566778887643
No 258
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.32 E-value=1.1e-10 Score=100.45 Aligned_cols=196 Identities=9% Similarity=0.154 Sum_probs=145.7
Q ss_pred EEEEcCCCCeEEEEecCCeEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEecCCCeEEEEEccCceeeeeec---
Q 047355 22 SVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFE--- 98 (312)
Q Consensus 22 ~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~--- 98 (312)
.+++|.-.--|+.++....|.-++++.++-+..+....++++.+..++...+|++|+.+|.|..||......+..+.
T Consensus 138 Dm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~ 217 (703)
T KOG2321|consen 138 DMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAAS 217 (703)
T ss_pred cccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeeccc
Confidence 34454323335566666778889999998888888888899999999999999999999999999988766554442
Q ss_pred ---cccc-----ceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeCCCeEE
Q 047355 99 ---AHED-----YIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQ 170 (312)
Q Consensus 99 ---~h~~-----~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~ 170 (312)
.|.+ .|+++.|..+|-.++.|..+|.+.|||++...+....-.+..-++..+.|.+.+.+-.+.......++
T Consensus 218 ~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~k 297 (703)
T KOG2321|consen 218 SVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILK 297 (703)
T ss_pred ccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEecchHHhh
Confidence 2322 49999999999999999999999999998875554444445567788888776544444444567799
Q ss_pred EEEcCCCcceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCC
Q 047355 171 IWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYET 220 (312)
Q Consensus 171 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~ 220 (312)
|||-.+++....++.. ..++-+++ -++..+++++-.++.+..|-+..
T Consensus 298 iWd~~~Gk~~asiEpt-~~lND~C~--~p~sGm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 298 IWDECTGKPMASIEPT-SDLNDFCF--VPGSGMFFTANESSKMHTYYIPS 344 (703)
T ss_pred hcccccCCceeecccc-CCcCceee--ecCCceEEEecCCCcceeEEccc
Confidence 9999988876665432 33665554 45677888998888887776543
No 259
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.31 E-value=6.2e-10 Score=99.01 Aligned_cols=218 Identities=15% Similarity=0.154 Sum_probs=130.0
Q ss_pred hcccCcEEEEEEcCCCCeEEEEec-CC--eEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEE-ecCCCe--EEEEE
Q 047355 14 IQKSDRVKSVDFHPTQPWVLASLY-SG--TVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVC-GSDDKF--IRVFD 87 (312)
Q Consensus 14 ~~~~~~i~~~~~~~~~~~l~~~~~-dg--~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-g~~dg~--i~iwd 87 (312)
......+.+..|+|||++|+.... ++ .|.+||+.+++... +...........|+|+++.|+. .+.+|. |.++|
T Consensus 214 ~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d 292 (448)
T PRK04792 214 LRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVD 292 (448)
T ss_pred ecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEE
Confidence 344557788999999999887654 33 57788887665432 2222333456789999998764 555664 77778
Q ss_pred ccCceeeeeecccccceeEEEEecCCCEEEEEeC-CCc--EEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEE-
Q 047355 88 YNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASD-DKL--IKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASA- 163 (312)
Q Consensus 88 ~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~-d~~--v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~- 163 (312)
+++++. +.+..+.......+|+|+++.++..+. ++. +.++|..........+.+ .......|+|.+ ..++..
T Consensus 293 l~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g--~~~~~~~~SpDG-~~l~~~~ 368 (448)
T PRK04792 293 IATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEG--EQNLGGSITPDG-RSMIMVN 368 (448)
T ss_pred CCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCC--CCCcCeeECCCC-CEEEEEE
Confidence 877653 444455555677899999998876553 454 444565543222112222 223345788865 455444
Q ss_pred eCCC--eEEEEEcCCCcceeeecccccceeEEEEEEcCCceEEEEEeC-CC--eEEEEeCCCCeEEEEecccccCeEEEE
Q 047355 164 SLDG--TIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSD-DF--TVKVWDYETKTCVQILEGHTNNVTAVC 238 (312)
Q Consensus 164 s~dg--~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~-dg--~i~vwd~~~~~~~~~~~~h~~~i~~l~ 238 (312)
..++ .|.++|+.++.... +..... .... .++|++..++..+. ++ .+.+++. ++.....+..+.+.+...+
T Consensus 369 ~~~g~~~I~~~dl~~g~~~~-lt~~~~-d~~p--s~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g~~~~p~ 443 (448)
T PRK04792 369 RTNGKFNIARQDLETGAMQV-LTSTRL-DESP--SVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQGEVKSPA 443 (448)
T ss_pred ecCCceEEEEEECCCCCeEE-ccCCCC-CCCc--eECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCCCCcCCCc
Confidence 3344 45557777665432 222111 1112 25778877665543 33 3677776 4555666666666777888
Q ss_pred EeC
Q 047355 239 FHP 241 (312)
Q Consensus 239 ~~~ 241 (312)
|+|
T Consensus 444 Wsp 446 (448)
T PRK04792 444 WSP 446 (448)
T ss_pred cCC
Confidence 887
No 260
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.31 E-value=1.7e-09 Score=96.13 Aligned_cols=204 Identities=11% Similarity=0.025 Sum_probs=127.7
Q ss_pred eEEEEEccCceeeeeecccccceeEEEEecCCCEEEEEeCC---CcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCC
Q 047355 82 FIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDD---KLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLN 158 (312)
Q Consensus 82 ~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d---~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 158 (312)
.|.++|.+... .+.+..+...+....|+|+++.|+..+.+ ..+.+||+..... ..+...........|+|.+..
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~--~~l~~~~g~~~~~~~SpDG~~ 256 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR--EQITNFEGLNGAPAWSPDGSK 256 (430)
T ss_pred EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE--EEccCCCCCcCCeEECCCCCE
Confidence 47777877543 34555667788999999999998876643 3588888865422 122222233345789986544
Q ss_pred EEEEEeCCC--eEEEEEcCCCcceeeecccccceeEEEEEEcCCceEEEEEeC-C--CeEEEEeCCCCeEEEEecccccC
Q 047355 159 TFASASLDG--TIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSD-D--FTVKVWDYETKTCVQILEGHTNN 233 (312)
Q Consensus 159 ~~~s~s~dg--~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~-d--g~i~vwd~~~~~~~~~~~~h~~~ 233 (312)
++++.+.+| .|.+||+.++... .+..+........ +++|+..++..+. + ..|+++++.+++...... ....
T Consensus 257 la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~--~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~-~~~~ 332 (430)
T PRK00178 257 LAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPF--WGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF-VGNY 332 (430)
T ss_pred EEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeE--ECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-CCCC
Confidence 444665565 5888899876543 3333333333333 4778776665543 3 357788887776543322 2223
Q ss_pred eEEEEEeCCCcEEEEEeCC-C--cEEEEeCCCcceeeecccCccceEEEEEecCCCeEEEEecC
Q 047355 234 VTAVCFHPELRIIITASED-G--TILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGCDN 294 (312)
Q Consensus 234 i~~l~~~~~~~~l~s~s~d-g--~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~ 294 (312)
.....|+|+++.++..+.+ + .|.+||+.+++... +... .......|+|||+.|+..+.+
T Consensus 333 ~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~~-~~~~~p~~spdg~~i~~~~~~ 394 (430)
T PRK00178 333 NARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LTDT-SLDESPSVAPNGTMLIYATRQ 394 (430)
T ss_pred ccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-ccCC-CCCCCceECCCCCEEEEEEec
Confidence 4467899999998877643 3 48888988765432 2221 122256899999999988764
No 261
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.27 E-value=1.7e-08 Score=88.17 Aligned_cols=263 Identities=10% Similarity=-0.004 Sum_probs=154.9
Q ss_pred CCCeEEEEecCCeEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEecCCCeEEEEEccCceeeeeecccccceeEE
Q 047355 28 TQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSL 107 (312)
Q Consensus 28 ~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~ 107 (312)
.+..+++++.+|.|.-+|..+++..-.+.......... ..++..++.++.++.+..+|.++++..-...... .+.+.
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p--~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~ 140 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGV--GADGGLVFVGTEKGEVIALDAEDGKELWRAKLSS-EVLSP 140 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccce--EEcCCEEEEEcCCCEEEEEECCCCcEeeeeccCc-eeecC
Confidence 35688889999999999988887765554433211121 2346788889999999999998887654443222 22221
Q ss_pred EEecCCCEEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEE-eCCC-CCCEEEEEeCCCeEEEEEcCCCcceeeecc
Q 047355 108 AVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSA-FNPK-DLNTFASASLDGTIQIWNMDSSAAKFTLDA 185 (312)
Q Consensus 108 ~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~-~~~~-~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~ 185 (312)
... .+..++.++.++.+..||.++... ...+........... -.|. ....++.+..++.+..+|.++++.......
T Consensus 141 p~v-~~~~v~v~~~~g~l~a~d~~tG~~-~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~ 218 (377)
T TIGR03300 141 PLV-ANGLVVVRTNDGRLTALDAATGER-LWTYSRVTPALTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRV 218 (377)
T ss_pred CEE-ECCEEEEECCCCeEEEEEcCCCce-eeEEccCCCceeecCCCCCEEECCEEEEECCCCEEEEEEccCCCEeeeecc
Confidence 111 234567778899999999876532 222222111100000 0000 114677888899999999988876544321
Q ss_pred cc-c---c---eeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEecccccCeEEEEEeCCCcEEEEEeCCCcEEEE
Q 047355 186 HE-K---G---INCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITASEDGTILIW 258 (312)
Q Consensus 186 ~~-~---~---v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~s~dg~v~iw 258 (312)
.. . . ...+...+.-.+..+..++.+|.+..||.++++.+-... ... ..... ..+..++.++.||.+..+
T Consensus 219 ~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~-~~~-~~~p~--~~~~~vyv~~~~G~l~~~ 294 (377)
T TIGR03300 219 ALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRD-ASS-YQGPA--VDDNRLYVTDADGVVVAL 294 (377)
T ss_pred ccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeec-cCC-ccCce--EeCCEEEEECCCCeEEEE
Confidence 10 0 0 000000000123456677889999999999988765443 111 11222 245667888899999999
Q ss_pred eCCCcceeeecccCcc-ceEEEEEecCCCeEEEEecCCeEEEEe
Q 047355 259 NATTFRLQNTLSSGLE-RVWSIGYKKGSNQVAFGCDNGTLIVKI 301 (312)
Q Consensus 259 d~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~~g~i~v~~ 301 (312)
|..+++.+.+...... ...+... .++.|.+++.+|.+++.-
T Consensus 295 d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d 336 (377)
T TIGR03300 295 DRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLS 336 (377)
T ss_pred ECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEE
Confidence 9999887665432111 1111111 356777888888777643
No 262
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=6e-09 Score=89.64 Aligned_cols=271 Identities=13% Similarity=0.211 Sum_probs=171.7
Q ss_pred cEEEEEEcCCCCeEEEE-----ecC-----CeEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEecCCCeEEEEEc
Q 047355 19 RVKSVDFHPTQPWVLAS-----LYS-----GTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDY 88 (312)
Q Consensus 19 ~i~~~~~~~~~~~l~~~-----~~d-----g~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~ 88 (312)
.++.+.|+|.+.+|.+= -.+ -.+++|+.++......+......-....|+.|+. +++--..+.+.+|++
T Consensus 75 ~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEs-l~arlv~nev~f~~~ 153 (566)
T KOG2315|consen 75 KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDES-LAARLVSNEVQFYDL 153 (566)
T ss_pred eeeeeeecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcCcccccccchh-hhhhhhcceEEEEec
Confidence 67888899988887652 122 2366888876333222222221213667777654 444445578999998
Q ss_pred cCceeeeeecccccceeEEEEecCC--CEEEE-----EeCCCcEEEEeCCCCc--ee--eeEecCCccceEEEEeCCCCC
Q 047355 89 NTMASVKEFEAHEDYIRSLAVHPTF--PFVLT-----ASDDKLIKLWDWEKNW--EC--TQTFEGHSHYVMQSAFNPKDL 157 (312)
Q Consensus 89 ~~~~~~~~~~~h~~~i~~~~~~~~~--~~l~t-----~s~d~~v~iwd~~~~~--~~--~~~~~~~~~~v~~~~~~~~~~ 157 (312)
.+.... .-+-|...|+.+.++|.+ .++++ .|.-..|++|...... .. .+.|-. ..-..+.|++.+.
T Consensus 154 ~~f~~~-~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFk--adkvqm~WN~~gt 230 (566)
T KOG2315|consen 154 GSFKTI-QHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFK--ADKVQMKWNKLGT 230 (566)
T ss_pred CCccce-eeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccc--cceeEEEeccCCc
Confidence 874322 223467789999999874 33443 3556679999754110 00 111111 1123456776655
Q ss_pred CEEEEEe--CCC---------eEEEEEcCCCcceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEE
Q 047355 158 NTFASAS--LDG---------TIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQI 226 (312)
Q Consensus 158 ~~~~s~s--~dg---------~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~ 226 (312)
.+|+..+ .|. +++++++........+ ....+|.++.|.++....-++-|-.--.+.+||.+ +.++..
T Consensus 231 ~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L-~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~d 308 (566)
T KOG2315|consen 231 ALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPL-LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFD 308 (566)
T ss_pred eEEEEEEEeecCCCccccccceEEEEEecCceEEEec-CCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEe
Confidence 5544443 233 5778777744443333 23578888887554444445556667789999986 445544
Q ss_pred ecccccCeEEEEEeCCCcEEEEEeCC---CcEEEEeCCCcceeeecccCccceEEEEEecCCCeEEEEecCCeEEE
Q 047355 227 LEGHTNNVTAVCFHPELRIIITASED---GTILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGCDNGTLIV 299 (312)
Q Consensus 227 ~~~h~~~i~~l~~~~~~~~l~s~s~d---g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~v 299 (312)
+ ..++=+++-|+|.|++++-+|-+ |.+-+||+.+.+++..+...... -++|+|||.++++++.-=+++|
T Consensus 309 f--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~tt--~~eW~PdGe~flTATTaPRlrv 380 (566)
T KOG2315|consen 309 F--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANTT--VFEWSPDGEYFLTATTAPRLRV 380 (566)
T ss_pred C--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCce--EEEEcCCCcEEEEEeccccEEe
Confidence 4 35566789999999999988865 78999999998888887765444 5889999999999988655554
No 263
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.25 E-value=3.3e-08 Score=96.13 Aligned_cols=239 Identities=8% Similarity=0.138 Sum_probs=152.7
Q ss_pred EEEEEcCCC-CeEEEEecCCeEEEEeccCCceeeeEEe-cC-------------CceeEEEEeeCCcEEEEec-CCCeEE
Q 047355 21 KSVDFHPTQ-PWVLASLYSGTVCIWNYHSQTTEKSVKV-TD-------------SPVRTAKFVAREHWIVCGS-DDKFIR 84 (312)
Q Consensus 21 ~~~~~~~~~-~~l~~~~~dg~v~iw~~~~~~~~~~~~~-~~-------------~~v~~~~~~~~~~~l~~g~-~dg~i~ 84 (312)
..+++++++ ...++-..++.|++||.... ....+.. .. ..-..+++.++++.|+.+. ..+.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~-~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGN-FIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCC-EEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 467888764 45555567889999998654 2322221 00 0124667787777666654 457899
Q ss_pred EEEccCceeeeeeccc-----------------ccceeEEEEec-CCCEEEEEeCCCcEEEEeCCCCceeeeEecC----
Q 047355 85 VFDYNTMASVKEFEAH-----------------EDYIRSLAVHP-TFPFVLTASDDKLIKLWDWEKNWECTQTFEG---- 142 (312)
Q Consensus 85 iwd~~~~~~~~~~~~h-----------------~~~i~~~~~~~-~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~---- 142 (312)
.+|..+.. +..+.+- -..-..++++| ++.+.++.+.++.|++||...... ..+.+
T Consensus 650 ~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v--~~~~G~G~~ 726 (1057)
T PLN02919 650 EIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVT--RVFSGDGYE 726 (1057)
T ss_pred EEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeE--EEEecCCcc
Confidence 99987653 2222110 01125789999 455667777788999999765421 11111
Q ss_pred -----C------ccceEEEEeCCCCCCEEEEEeCCCeEEEEEcCCCcceeeecc-------------c--------ccce
Q 047355 143 -----H------SHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDA-------------H--------EKGI 190 (312)
Q Consensus 143 -----~------~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~-------------~--------~~~v 190 (312)
+ -.....++++|.+..++++-+.++.|++||+.++.......+ . -...
T Consensus 727 ~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P 806 (1057)
T PLN02919 727 RNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHP 806 (1057)
T ss_pred ccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCC
Confidence 0 122345778886555777888889999999986543211100 0 0011
Q ss_pred eEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEec-------------ccccCeEEEEEeCCCcEEEEEeCCCcEEE
Q 047355 191 NCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILE-------------GHTNNVTAVCFHPELRIIITASEDGTILI 257 (312)
Q Consensus 191 ~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~-------------~h~~~i~~l~~~~~~~~l~s~s~dg~v~i 257 (312)
..+. ++++|..+++.+.++.|++||..++....... +.-.....++++++++++++-+.+++|++
T Consensus 807 ~Gva--vd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irv 884 (1057)
T PLN02919 807 LGVL--CAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRY 884 (1057)
T ss_pred ceee--EeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEE
Confidence 2333 46778888899999999999998776553221 11125678999999999999999999999
Q ss_pred EeCCCcce
Q 047355 258 WNATTFRL 265 (312)
Q Consensus 258 wd~~~~~~ 265 (312)
||+.+.+.
T Consensus 885 id~~~~~~ 892 (1057)
T PLN02919 885 LDLNKGEA 892 (1057)
T ss_pred EECCCCcc
Confidence 99987654
No 264
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.25 E-value=2e-11 Score=104.64 Aligned_cols=204 Identities=24% Similarity=0.319 Sum_probs=143.7
Q ss_pred eeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCc------eeeeEecCCccceEEEEeCCCCCCEEEEEeCCC
Q 047355 94 VKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNW------ECTQTFEGHSHYVMQSAFNPKDLNTFASASLDG 167 (312)
Q Consensus 94 ~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg 167 (312)
+..+.+|+..|+.++.-.+.+-+++++.|++||+|.++... .+..++..|+.++..+.|-. +...++ +.||
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~-~lr~i~--ScD~ 804 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLA-DLRSIA--SCDG 804 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeee-ccceee--eccC
Confidence 45678999999998776677778999999999999986432 24557788999998888865 334444 4589
Q ss_pred eEEEEEcCCCcceeee-ccc-ccceeEEEEEEcCCceEEEEE-eCCCeEEEEeCCCCeEEEEec-----ccccCeEEEEE
Q 047355 168 TIQIWNMDSSAAKFTL-DAH-EKGINCIDYFITSDKVYLITG-SDDFTVKVWDYETKTCVQILE-----GHTNNVTAVCF 239 (312)
Q Consensus 168 ~v~iwd~~~~~~~~~~-~~~-~~~v~~~~~~~~~~~~~l~sg-~~dg~i~vwd~~~~~~~~~~~-----~h~~~i~~l~~ 239 (312)
-|.+||.--+....++ .+. ...+..+....+-+..++.+| +...+|+++|.+.......++ +.+.-+++++.
T Consensus 805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaV 884 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAV 884 (1034)
T ss_pred cceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEe
Confidence 9999997655544332 121 122333333334344444444 788999999998876554443 44566899999
Q ss_pred eCCCcEEEEEeCCCcEEEEeCCCcceeeecccCccceEEEEEecCCCeEEEEecCCeEEEEe
Q 047355 240 HPELRIIITASEDGTILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGCDNGTLIVKI 301 (312)
Q Consensus 240 ~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~v~~ 301 (312)
.|.|.++|.+-+.|.|.+.|.+++++++......-....++ .|..+.|+....|.++.|-|
T Consensus 885 a~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnW 945 (1034)
T KOG4190|consen 885 ADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNW 945 (1034)
T ss_pred ccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeee
Confidence 99999999999999999999999998776544433343443 45666777777777777733
No 265
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.25 E-value=1.6e-07 Score=77.21 Aligned_cols=269 Identities=12% Similarity=0.161 Sum_probs=168.3
Q ss_pred hhcccCcEEEEEEcCCCCeEEEEecC---CeEEEEeccC--Ccee--eeEEecCCceeEEEEeeCCcEEEEecC-CCeEE
Q 047355 13 FIQKSDRVKSVDFHPTQPWVLASLYS---GTVCIWNYHS--QTTE--KSVKVTDSPVRTAKFVAREHWIVCGSD-DKFIR 84 (312)
Q Consensus 13 ~~~~~~~i~~~~~~~~~~~l~~~~~d---g~v~iw~~~~--~~~~--~~~~~~~~~v~~~~~~~~~~~l~~g~~-dg~i~ 84 (312)
.....+..+=|+|+|++++|.++.++ |.|.-|.++. ++.. ........+-..+++.+++++++++.. -|.|.
T Consensus 35 ~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~ 114 (346)
T COG2706 35 LVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVS 114 (346)
T ss_pred hccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEE
Confidence 44556778999999999999998655 7788777765 3322 222223334477889999999999886 48999
Q ss_pred EEEccCceeee---eecccccc----------eeEEEEecCCCEEEEEeC-CCcEEEEeCCCCceee---eEecCCccce
Q 047355 85 VFDYNTMASVK---EFEAHEDY----------IRSLAVHPTFPFVLTASD-DKLIKLWDWEKNWECT---QTFEGHSHYV 147 (312)
Q Consensus 85 iwd~~~~~~~~---~~~~h~~~----------i~~~~~~~~~~~l~t~s~-d~~v~iwd~~~~~~~~---~~~~~~~~~v 147 (312)
++-++....+. .+..|.+. +....+.|++++|++... --.|.+|++..+.... ..+. ...--
T Consensus 115 v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~-~G~GP 193 (346)
T COG2706 115 VYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVK-PGAGP 193 (346)
T ss_pred EEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccC-CCCCc
Confidence 99875522111 12234433 778889999999987754 2357888876432111 0111 12223
Q ss_pred EEEEeCCCCCCEEEEEeCCCeEEEEEcCCC-cceeeecc-------cccceeEEEEEEcCCceEEEEEeC-CCeEEEEeC
Q 047355 148 MQSAFNPKDLNTFASASLDGTIQIWNMDSS-AAKFTLDA-------HEKGINCIDYFITSDKVYLITGSD-DFTVKVWDY 218 (312)
Q Consensus 148 ~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~-~~~~~~~~-------~~~~v~~~~~~~~~~~~~l~sg~~-dg~i~vwd~ 218 (312)
..+.|+|+..-.-+.+-.+++|-+|..+.. .....++. -.....+-++.+++||++|.++.. ...|.+|.+
T Consensus 194 RHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V 273 (346)
T COG2706 194 RHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSV 273 (346)
T ss_pred ceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEE
Confidence 567899965434455667999999998874 22222221 123344556678999999887642 225777765
Q ss_pred C--CCeE--EEEecccccCeEEEEEeCCCcEEEEEeCCC-cEEEEe--CCCcceeeecc-cCccceEEEEEe
Q 047355 219 E--TKTC--VQILEGHTNNVTAVCFHPELRIIITASEDG-TILIWN--ATTFRLQNTLS-SGLERVWSIGYK 282 (312)
Q Consensus 219 ~--~~~~--~~~~~~h~~~i~~l~~~~~~~~l~s~s~dg-~v~iwd--~~~~~~~~~~~-~~~~~v~~~~~~ 282 (312)
. ++++ +.....+...-+...|+|.+++|+++..++ .|.+|. -.++++-.... .......||.|.
T Consensus 274 ~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 274 DPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred cCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence 4 3332 222333444578999999999998888764 688885 45666544333 223345566653
No 266
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.22 E-value=3e-10 Score=93.77 Aligned_cols=161 Identities=16% Similarity=0.221 Sum_probs=112.9
Q ss_pred cEEEEEEcCCCCeEEEEecCCeEEEEeccCCce----eeeEEecCCceeEEEEeeCCcEEEEec---CCCeEEEEEccCc
Q 047355 19 RVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTT----EKSVKVTDSPVRTAKFVAREHWIVCGS---DDKFIRVFDYNTM 91 (312)
Q Consensus 19 ~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~g~---~dg~i~iwd~~~~ 91 (312)
.+..+..+|+++.||.+..+....++++..... ...... ...-+++.|..+......+. ....+.+|....+
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~ 142 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-PKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG 142 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeec-ccCcceeeeeeccceEEEEeecCCceeeeeeccccc
Confidence 455667788888888888777777777754332 222222 22334556666555555444 4455555555543
Q ss_pred eeeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeCCCeEEE
Q 047355 92 ASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQI 171 (312)
Q Consensus 92 ~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~i 171 (312)
+...+-+|-.-+++++++|++++|+|+..|..|++=........-.-..||+.+|..+..-+. ..|+++|.|++|++
T Consensus 143 -~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~--~~LlS~sGD~tlr~ 219 (390)
T KOG3914|consen 143 -RCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN--YLLLSGSGDKTLRL 219 (390)
T ss_pred -CcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC--ceeeecCCCCcEEE
Confidence 334456899999999999999999999999999996654432322335689999999988764 56999999999999
Q ss_pred EEcCCCcceeee
Q 047355 172 WNMDSSAAKFTL 183 (312)
Q Consensus 172 wd~~~~~~~~~~ 183 (312)
||+.+++...++
T Consensus 220 Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 220 WDITSGKLLDTC 231 (390)
T ss_pred EecccCCccccc
Confidence 999998876544
No 267
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.21 E-value=8.4e-11 Score=100.91 Aligned_cols=237 Identities=14% Similarity=0.153 Sum_probs=154.1
Q ss_pred eEEecCCceeEEEEeeCCcEEEEecCCCeEEEEEccC-------ceeeeeecccccceeEEEEecCCCEEEEEeCCCcEE
Q 047355 54 SVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNT-------MASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIK 126 (312)
Q Consensus 54 ~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~-------~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~ 126 (312)
.+.+|...|+.+.-..+.+.+++++.|++|++|.++. ..+.-++..|+.+|.++.|-.+.++++ +.||.+.
T Consensus 730 nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~--ScD~giH 807 (1034)
T KOG4190|consen 730 NFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIA--SCDGGIH 807 (1034)
T ss_pred cccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceee--eccCcce
Confidence 4556667777777777788899999999999998753 235667899999999999998887765 4579999
Q ss_pred EEeCCCCceeeeEe----cCCccceEEEEeCCCCCCEEEE-EeCCCeEEEEEcCCCcceeee-----cccccceeEEEEE
Q 047355 127 LWDWEKNWECTQTF----EGHSHYVMQSAFNPKDLNTFAS-ASLDGTIQIWNMDSSAAKFTL-----DAHEKGINCIDYF 196 (312)
Q Consensus 127 iwd~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~s-~s~dg~v~iwd~~~~~~~~~~-----~~~~~~v~~~~~~ 196 (312)
+||.-.+....+.. .+....+.++.- .+...+++ |+...+|+++|.+...-.-.+ .+...-+.+++
T Consensus 808 lWDPFigr~Laq~~dapk~~a~~~ikcl~n--v~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~ia-- 883 (1034)
T KOG4190|consen 808 LWDPFIGRLLAQMEDAPKEGAGGNIKCLEN--VDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIA-- 883 (1034)
T ss_pred eecccccchhHhhhcCcccCCCceeEeccc--CcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEE--
Confidence 99953221111111 111122333221 13344444 478899999999987544332 23334466666
Q ss_pred EcCCceEEEEEeCCCeEEEEeCCCCeEEEEecccccCeEEEEEeCCCcEEEEEeCCCcEEE-EeCCCcceeeecccCccc
Q 047355 197 ITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITASEDGTILI-WNATTFRLQNTLSSGLER 275 (312)
Q Consensus 197 ~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~s~dg~v~i-wd~~~~~~~~~~~~~~~~ 275 (312)
..+.|++++.|-.+|.|.+.|.++++.+..++.-......++ .|..+.|+....|-++.+ |-...+.+..+.....++
T Consensus 884 Va~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kpppep 962 (1034)
T KOG4190|consen 884 VADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEP 962 (1034)
T ss_pred eccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcc
Confidence 456788999999999999999999998887775555554444 355567887778888888 876666554444433322
Q ss_pred eEEEEEecCCCeEEEEecCCeEEE
Q 047355 276 VWSIGYKKGSNQVAFGCDNGTLIV 299 (312)
Q Consensus 276 v~~~~~~~~~~~l~~~~~~g~i~v 299 (312)
..- ...-|-.|+++.+...+.|
T Consensus 963 ahf--lqsvgpSLV~a~~Gn~lgV 984 (1034)
T KOG4190|consen 963 AHF--LQSVGPSLVTAQNGNILGV 984 (1034)
T ss_pred hhh--hhccCceeEEeccCcEEEE
Confidence 110 1223344555555544444
No 268
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.19 E-value=3.2e-10 Score=100.40 Aligned_cols=283 Identities=19% Similarity=0.223 Sum_probs=185.3
Q ss_pred cCcEEEEEEcCCCCeEEEEecCCeEEEEeccC-CceeeeEEe-cCCceeEEEEeeC---CcEEEEecCCCeEEEEEccCc
Q 047355 17 SDRVKSVDFHPTQPWVLASLYSGTVCIWNYHS-QTTEKSVKV-TDSPVRTAKFVAR---EHWIVCGSDDKFIRVFDYNTM 91 (312)
Q Consensus 17 ~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~-~~~~~~~~~-~~~~v~~~~~~~~---~~~l~~g~~dg~i~iwd~~~~ 91 (312)
...+.++.++|.|+-++.++.-|- .+-|++. .+..+-+.. ..-.+....|++. ..++++-+... -.+|++...
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~gl-~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qk-aiiwnlA~s 101 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQGL-YIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQK-AIIWNLAKS 101 (1081)
T ss_pred cCcccceeeccccchhhhhhhcCe-EEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcch-hhhhhhhcC
Confidence 457889999999988887777665 4445542 233222222 2223556677653 34566655544 468887432
Q ss_pred ---eeeeeecccccceeEEEEecCCC-EEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeCCC
Q 047355 92 ---ASVKEFEAHEDYIRSLAVHPTFP-FVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDG 167 (312)
Q Consensus 92 ---~~~~~~~~h~~~i~~~~~~~~~~-~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg 167 (312)
.....+-+|...|+.+.|+|+.+ .+++++-|..+..||++....+...+..-......+.|+..+++. .+.+...
T Consensus 102 s~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~v-lasshg~ 180 (1081)
T KOG0309|consen 102 SSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNV-LASSHGN 180 (1081)
T ss_pred CccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcch-hhhccCC
Confidence 23345678999999999999765 578999999999999987666665555444455678888877654 4456677
Q ss_pred eEEEEEcCCCc-ceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEE-EEecccccCeEEEEEeCCC--
Q 047355 168 TIQIWNMDSSA-AKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCV-QILEGHTNNVTAVCFHPEL-- 243 (312)
Q Consensus 168 ~v~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~-~~~~~h~~~i~~l~~~~~~-- 243 (312)
.|++||++.+. ++..+.+|...++.+++. ......+.+.+.|++|++||.+..... ........+|..-+|-|-+
T Consensus 181 ~i~vwd~r~gs~pl~s~K~~vs~vn~~~fn-r~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g 259 (1081)
T KOG0309|consen 181 DIFVWDLRKGSTPLCSLKGHVSSVNSIDFN-RFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEG 259 (1081)
T ss_pred ceEEEeccCCCcceEEecccceeeehHHHh-hhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCce
Confidence 89999998764 566777887777777652 222345778999999999997643221 1112234567777777743
Q ss_pred cEEEEEeCCCcEEEE---------eCCC-cceeeecccCccceEEEEEecCC----------CeEEEEecCCeEEEEecc
Q 047355 244 RIIITASEDGTILIW---------NATT-FRLQNTLSSGLERVWSIGYKKGS----------NQVAFGCDNGTLIVKIGN 303 (312)
Q Consensus 244 ~~l~s~s~dg~v~iw---------d~~~-~~~~~~~~~~~~~v~~~~~~~~~----------~~l~~~~~~g~i~v~~~~ 303 (312)
.++.---.+..+.+. +..+ .+.++++.+|..+|....|-.-+ =+|++=+.|.++++|--+
T Consensus 260 ~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~ 339 (1081)
T KOG0309|consen 260 YCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPID 339 (1081)
T ss_pred eEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeecc
Confidence 332222222244443 3333 35688999998888766664433 269999999999998643
No 269
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.19 E-value=2e-08 Score=88.76 Aligned_cols=223 Identities=11% Similarity=0.094 Sum_probs=130.4
Q ss_pred cccCcEEEEEEcCCCCeEE---EEecCCe--EEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEecC-----CCeEE
Q 047355 15 QKSDRVKSVDFHPTQPWVL---ASLYSGT--VCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSD-----DKFIR 84 (312)
Q Consensus 15 ~~~~~i~~~~~~~~~~~l~---~~~~dg~--v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~-----dg~i~ 84 (312)
.....+.+=+|+|||+.++ +...+|. |.+.++..++.. .+....+......|+|||+.|+..+. +-.+.
T Consensus 182 ~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~-~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~ 260 (428)
T PRK01029 182 QEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK-KILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQ 260 (428)
T ss_pred cCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce-EeecCCCCccceEECCCCCEEEEEECCCCCcceeEE
Confidence 3344566779999997532 4444554 666677766543 33333444556789999988875442 22344
Q ss_pred EEEccCc---eeeeeecccccceeEEEEecCCCEEEEEe-CCCcEEEEeC--CCCceeeeEecCCccceEEEEeCCCCCC
Q 047355 85 VFDYNTM---ASVKEFEAHEDYIRSLAVHPTFPFVLTAS-DDKLIKLWDW--EKNWECTQTFEGHSHYVMQSAFNPKDLN 158 (312)
Q Consensus 85 iwd~~~~---~~~~~~~~h~~~i~~~~~~~~~~~l~t~s-~d~~v~iwd~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 158 (312)
.|++..+ ...+....+.......+|+|+++.|+..+ .+|...+|.+ .........+..+...+....|+|.+ .
T Consensus 261 ~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG-~ 339 (428)
T PRK01029 261 SFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDG-K 339 (428)
T ss_pred EeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCC-C
Confidence 4676542 22222222223346789999999887665 4676666653 21111123333344455677899964 5
Q ss_pred EEEEEeC-C--CeEEEEEcCCCcceeeecccccceeEEEEEEcCCceEEEEEeC---CCeEEEEeCCCCeEEEEeccccc
Q 047355 159 TFASASL-D--GTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSD---DFTVKVWDYETKTCVQILEGHTN 232 (312)
Q Consensus 159 ~~~s~s~-d--g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~---dg~i~vwd~~~~~~~~~~~~h~~ 232 (312)
.++..+. + ..|.+||+.+++.... ......+.... +++|+.+|+..+. ...|.++|+.+++...... ..+
T Consensus 340 ~Laf~~~~~g~~~I~v~dl~~g~~~~L-t~~~~~~~~p~--wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~-~~g 415 (428)
T PRK01029 340 KIAFCSVIKGVRQICVYDLATGRDYQL-TTSPENKESPS--WAIDSLHLVYSAGNSNESELYLISLITKKTRKIVI-GSG 415 (428)
T ss_pred EEEEEEcCCCCcEEEEEECCCCCeEEc-cCCCCCccceE--ECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-CCC
Confidence 5555443 2 3699999987765433 22222334444 4678877664332 3568889988776655443 445
Q ss_pred CeEEEEEeCCC
Q 047355 233 NVTAVCFHPEL 243 (312)
Q Consensus 233 ~i~~l~~~~~~ 243 (312)
.+...+|+|-.
T Consensus 416 ~~~~p~Ws~~~ 426 (428)
T PRK01029 416 EKRFPSWGAFP 426 (428)
T ss_pred cccCceecCCC
Confidence 56777888743
No 270
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.19 E-value=2.6e-09 Score=86.79 Aligned_cols=239 Identities=18% Similarity=0.251 Sum_probs=153.9
Q ss_pred CCceeEEEEeeCCcEEEEecCCCeEEEEEccCce-----eeeeecccc------------cceeEEEEecCCC--EEEEE
Q 047355 59 DSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMA-----SVKEFEAHE------------DYIRSLAVHPTFP--FVLTA 119 (312)
Q Consensus 59 ~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~-----~~~~~~~h~------------~~i~~~~~~~~~~--~l~t~ 119 (312)
..-+.++.|...|.+|++|..+|.|.++.-.... ....++.|+ .+|..+.|.+++. .++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 3467889999999999999999999999644322 223344443 4688889987654 46677
Q ss_pred eCCCcEEEEeCCCCceee----------------------------------eE-ecCCccceEEEEeCCCCCCEEEEEe
Q 047355 120 SDDKLIKLWDWEKNWECT----------------------------------QT-FEGHSHYVMQSAFNPKDLNTFASAS 164 (312)
Q Consensus 120 s~d~~v~iwd~~~~~~~~----------------------------------~~-~~~~~~~v~~~~~~~~~~~~~~s~s 164 (312)
..|.++++|.+....... +. ...|+-.+.++.++. +...++++
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~Ns-D~Et~lSA- 182 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNS-DKETFLSA- 182 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecC-ccceEeec-
Confidence 889999999864211100 00 124555566777765 44566654
Q ss_pred CCCeEEEEEcCCCcceee---eccc-----ccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeE----EEEec----
Q 047355 165 LDGTIQIWNMDSSAAKFT---LDAH-----EKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTC----VQILE---- 228 (312)
Q Consensus 165 ~dg~v~iwd~~~~~~~~~---~~~~-----~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~----~~~~~---- 228 (312)
.|-.|.+|++.-...-+. +.++ ..-+++..|.+.. ...++-.+..|+|++-|++...+ -+.+.
T Consensus 183 DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~-cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEeped 261 (433)
T KOG1354|consen 183 DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHH-CNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPED 261 (433)
T ss_pred cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhH-ccEEEEecCCCcEEEeechhhhhhcchhhhhccccC
Confidence 678899999864322111 1122 2234555554433 45667778899999999984321 11111
Q ss_pred --------ccccCeEEEEEeCCCcEEEEEeCCCcEEEEeCCC-cceeeecccCc---------------cceEEEEEecC
Q 047355 229 --------GHTNNVTAVCFHPELRIIITASEDGTILIWNATT-FRLQNTLSSGL---------------ERVWSIGYKKG 284 (312)
Q Consensus 229 --------~h~~~i~~l~~~~~~~~l~s~s~dg~v~iwd~~~-~~~~~~~~~~~---------------~~v~~~~~~~~ 284 (312)
.--+.|..+.|++.|+++++-.. -+|++||+.- .+...+..-|. -.-..+.|+.+
T Consensus 262 p~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~ 340 (433)
T KOG1354|consen 262 PSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGN 340 (433)
T ss_pred CcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCC
Confidence 11235888999999999987664 5899999842 23333222221 12367889999
Q ss_pred CCeEEEEecCCeEEEEe
Q 047355 285 SNQVAFGCDNGTLIVKI 301 (312)
Q Consensus 285 ~~~l~~~~~~g~i~v~~ 301 (312)
+..+++|+=+.-.++--
T Consensus 341 ~~~v~TGsy~n~frvf~ 357 (433)
T KOG1354|consen 341 DSYVMTGSYNNVFRVFN 357 (433)
T ss_pred cceEecccccceEEEec
Confidence 99999999888877654
No 271
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.17 E-value=4.2e-09 Score=93.21 Aligned_cols=279 Identities=8% Similarity=0.137 Sum_probs=186.6
Q ss_pred ccCcEEEEEEcCCCCeEEEEecCCeEEEEeccCCce---------------eeeEEecCCceeEEEEeeCCcEEEEecCC
Q 047355 16 KSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTT---------------EKSVKVTDSPVRTAKFVAREHWIVCGSDD 80 (312)
Q Consensus 16 ~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~---------------~~~~~~~~~~v~~~~~~~~~~~l~~g~~d 80 (312)
......+++|+-...+++.|+.||.+++..+.+... -+++.+|...|..+.|+.+.+.|-+...+
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS 92 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence 345789999999999999999999999998764321 13456788999999999999999999999
Q ss_pred CeEEEEEccCceeeeee--cccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCC
Q 047355 81 KFIRVFDYNTMASVKEF--EAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLN 158 (312)
Q Consensus 81 g~i~iwd~~~~~~~~~~--~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 158 (312)
|.|.+|-+-.+.=..++ ....+-|.+++|+.+|+.++..-.||.|.+=.+..+..--+.+++. ....+.|++. ..
T Consensus 93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~--~l~hv~ws~D-~~ 169 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQ--LLAHVLWSED-LE 169 (1189)
T ss_pred ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchh--eccceeeccc-HH
Confidence 99999987655422222 2334568999999999999888889988876554331111112211 1235678874 45
Q ss_pred EEEEEeCCCeEEEEEcCCCcce-------eeecc----cccceeEEEEE------EcCCceEEEEEeCCCeEEEEeCCCC
Q 047355 159 TFASASLDGTIQIWNMDSSAAK-------FTLDA----HEKGINCIDYF------ITSDKVYLITGSDDFTVKVWDYETK 221 (312)
Q Consensus 159 ~~~s~s~dg~v~iwd~~~~~~~-------~~~~~----~~~~v~~~~~~------~~~~~~~l~sg~~dg~i~vwd~~~~ 221 (312)
.++.+-.+|.+.+||...+-.. ....+ ....+..+.|. ..|+...++.+-.+|.+.+.--++.
T Consensus 170 ~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND 249 (1189)
T KOG2041|consen 170 QALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSEND 249 (1189)
T ss_pred HHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCC
Confidence 6666677899999997543110 00000 01112223221 2346677888989998888754443
Q ss_pred eEEEEecccccCeEEEEEeCCCcEEEEEeCCC---------cEEEEeCCCcceeeecccCccceEEEEEecCCCeEEEEe
Q 047355 222 TCVQILEGHTNNVTAVCFHPELRIIITASEDG---------TILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGC 292 (312)
Q Consensus 222 ~~~~~~~~h~~~i~~l~~~~~~~~l~s~s~dg---------~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 292 (312)
.....+. ..-.|....|+++|..||.++.|. .|.++. +-++...+++-....+.++.|-..|-.+|.+-
T Consensus 250 ~~Pvv~d-tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It~lsWEg~gLriA~Av 327 (1189)
T KOG2041|consen 250 PEPVVVD-TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCITGLSWEGTGLRIAIAV 327 (1189)
T ss_pred CCCeEEe-cccEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCceeeeeEEcCCceEEEEEe
Confidence 2222222 235688999999999999998642 344443 34667777887888899999977776666543
Q ss_pred cCCeEEEE
Q 047355 293 DNGTLIVK 300 (312)
Q Consensus 293 ~~g~i~v~ 300 (312)
|+.|++.
T Consensus 328 -dsfiyfa 334 (1189)
T KOG2041|consen 328 -DSFIYFA 334 (1189)
T ss_pred -cceEEEE
Confidence 4555544
No 272
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.13 E-value=4e-07 Score=88.77 Aligned_cols=235 Identities=13% Similarity=0.155 Sum_probs=150.9
Q ss_pred EEEEeeC-CcEEEEecCCCeEEEEEccCceeeeeecc-c-------------ccceeEEEEecCCCEEEEEe-CCCcEEE
Q 047355 64 TAKFVAR-EHWIVCGSDDKFIRVFDYNTMASVKEFEA-H-------------EDYIRSLAVHPTFPFVLTAS-DDKLIKL 127 (312)
Q Consensus 64 ~~~~~~~-~~~l~~g~~dg~i~iwd~~~~~~~~~~~~-h-------------~~~i~~~~~~~~~~~l~t~s-~d~~v~i 127 (312)
.+++.+. +...++-+.++.|+++|..... ...+.. . -..-..+++.+++..|+.+. ..+.|++
T Consensus 572 gvavd~~~g~lyVaDs~n~rI~v~d~~G~~-i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~ 650 (1057)
T PLN02919 572 KLAIDLLNNRLFISDSNHNRIVVTDLDGNF-IVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALRE 650 (1057)
T ss_pred eEEEECCCCeEEEEECCCCeEEEEeCCCCE-EEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEE
Confidence 3556654 4555666678899999986543 222221 1 11246788988877665544 4567999
Q ss_pred EeCCCCceeeeEecCC-----------------ccceEEEEeCCCCCCEEEEEeCCCeEEEEEcCCCcceeeecc-----
Q 047355 128 WDWEKNWECTQTFEGH-----------------SHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDA----- 185 (312)
Q Consensus 128 wd~~~~~~~~~~~~~~-----------------~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~----- 185 (312)
+|..+.. +..+.+. -.....++++|.++.++++.+.++.|++||..++.... +.+
T Consensus 651 id~~~~~--V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~-~~G~G~~~ 727 (1057)
T PLN02919 651 IDFVNET--VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRV-FSGDGYER 727 (1057)
T ss_pred EecCCCE--EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEE-EecCCccc
Confidence 9876532 2222110 01234678888666788888889999999987654321 111
Q ss_pred ----cc------cceeEEEEEEcCCce-EEEEEeCCCeEEEEeCCCCeEEEEecc-------------c--------ccC
Q 047355 186 ----HE------KGINCIDYFITSDKV-YLITGSDDFTVKVWDYETKTCVQILEG-------------H--------TNN 233 (312)
Q Consensus 186 ----~~------~~v~~~~~~~~~~~~-~l~sg~~dg~i~vwd~~~~~~~~~~~~-------------h--------~~~ 233 (312)
+. .....++ +++++. ++++.+.++.|++||+.++.......+ + -..
T Consensus 728 ~~~g~~~~~~~~~~P~GIa--vspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~ 805 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGIS--LSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQH 805 (1057)
T ss_pred cCCCCccccccccCccEEE--EeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccC
Confidence 00 1122343 456665 666777889999999886543211100 0 112
Q ss_pred eEEEEEeCCCcEEEEEeCCCcEEEEeCCCcceeeecc-------------cCccceEEEEEecCCCeEEEEecCCeEEEE
Q 047355 234 VTAVCFHPELRIIITASEDGTILIWNATTFRLQNTLS-------------SGLERVWSIGYKKGSNQVAFGCDNGTLIVK 300 (312)
Q Consensus 234 i~~l~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~-------------~~~~~v~~~~~~~~~~~l~~~~~~g~i~v~ 300 (312)
..++++++++.++++-..+++|++||..++....... +....+..++++++|+.+++-+.+++|+++
T Consensus 806 P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvi 885 (1057)
T PLN02919 806 PLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYL 885 (1057)
T ss_pred CceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEE
Confidence 4689999999999999999999999998765543221 123467899999999999999999999988
Q ss_pred eccC
Q 047355 301 IGNS 304 (312)
Q Consensus 301 ~~~~ 304 (312)
-.+.
T Consensus 886 d~~~ 889 (1057)
T PLN02919 886 DLNK 889 (1057)
T ss_pred ECCC
Confidence 6654
No 273
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.11 E-value=4.8e-08 Score=77.00 Aligned_cols=228 Identities=15% Similarity=0.094 Sum_probs=141.5
Q ss_pred CeEEEEecCCeEEEEeccCCcee-eeEEecCCceeEEEEeeC-CcEEEEecCCCeEEEEEccCceeeeeeccccc--cee
Q 047355 30 PWVLASLYSGTVCIWNYHSQTTE-KSVKVTDSPVRTAKFVAR-EHWIVCGSDDKFIRVFDYNTMASVKEFEAHED--YIR 105 (312)
Q Consensus 30 ~~l~~~~~dg~v~iw~~~~~~~~-~~~~~~~~~v~~~~~~~~-~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~--~i~ 105 (312)
.+|+.|+.-|...+|...+.+.. +....+...|+-..-..+ .-.+..++.|.++++.+++....- +..|.. .+.
T Consensus 85 ~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~--~~~h~~~~~~n 162 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNK--FAVHNQNLTQN 162 (344)
T ss_pred cEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCccc--ceeecccccee
Confidence 57899999999999998754332 222222222222211111 234677888999999887654322 222333 378
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEeCCCCcee-ee-EecCCccceEEEEeCCCCCCEEEEEeCCCeEEEEEcCCCccee--
Q 047355 106 SLAVHPTFPFVLTASDDKLIKLWDWEKNWEC-TQ-TFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKF-- 181 (312)
Q Consensus 106 ~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~-~~-~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~-- 181 (312)
+++++++++++++.++...|-.|.+....+- .. .....+..-....|+.. ...||+++.||++.|||++......
T Consensus 163 s~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~-~~~FAv~~Qdg~~~I~DVR~~~tpm~~ 241 (344)
T KOG4532|consen 163 SLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSEN-DLQFAVVFQDGTCAIYDVRNMATPMAE 241 (344)
T ss_pred eeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccC-cceEEEEecCCcEEEEEecccccchhh
Confidence 8999999999999999999999987654222 22 12222333345667754 4789999999999999999764332
Q ss_pred ---eecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEec-------cccc-CeEEEEEeCCCcEEEEEe
Q 047355 182 ---TLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILE-------GHTN-NVTAVCFHPELRIIITAS 250 (312)
Q Consensus 182 ---~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~-------~h~~-~i~~l~~~~~~~~l~s~s 250 (312)
+.+.|.+++..+.|.+..---+|+-.-.-+.+.+-|++++...+.+. .|.. .|..-.|+.++.-+.+.+
T Consensus 242 ~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~ 321 (344)
T KOG4532|consen 242 ISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKN 321 (344)
T ss_pred hcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCccccccc
Confidence 33457788888776532222233333445679999999876544432 2333 377778887766555555
Q ss_pred CCCcEEEEeCC
Q 047355 251 EDGTILIWNAT 261 (312)
Q Consensus 251 ~dg~v~iwd~~ 261 (312)
++ .+.=|++.
T Consensus 322 e~-~~ae~ni~ 331 (344)
T KOG4532|consen 322 EL-QGAEYNIL 331 (344)
T ss_pred ch-hhheeecc
Confidence 44 23335443
No 274
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.10 E-value=9.3e-09 Score=82.62 Aligned_cols=242 Identities=19% Similarity=0.370 Sum_probs=157.7
Q ss_pred ccCcEEEEEEcCCCCeEEEEecCCeEEEEeccCCc-----eeeeEEecC------------CceeEEEEeeCC--cEEEE
Q 047355 16 KSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQT-----TEKSVKVTD------------SPVRTAKFVARE--HWIVC 76 (312)
Q Consensus 16 ~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~-----~~~~~~~~~------------~~v~~~~~~~~~--~~l~~ 76 (312)
..+.|+++.|...|.+|++|...|.|.++.-+... -...|+.|+ ..|..+.|..++ ..++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 45789999999999999999999999999654322 111233332 346777777543 34566
Q ss_pred ecCCCeEEEEEccCc------------------e-ee-----------------------eee-cccccceeEEEEecCC
Q 047355 77 GSDDKFIRVFDYNTM------------------A-SV-----------------------KEF-EAHEDYIRSLAVHPTF 113 (312)
Q Consensus 77 g~~dg~i~iwd~~~~------------------~-~~-----------------------~~~-~~h~~~i~~~~~~~~~ 113 (312)
.++|.+|++|.+... . ++ ..+ ..|.--|.++.++.+.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 678999999975321 0 00 011 2466678899999888
Q ss_pred CEEEEEeCCCcEEEEeCCCCceeee--EecCC-----ccceEEEEeCCCCCCEEEEEeCCCeEEEEEcCCCcc------e
Q 047355 114 PFVLTASDDKLIKLWDWEKNWECTQ--TFEGH-----SHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAA------K 180 (312)
Q Consensus 114 ~~l~t~s~d~~v~iwd~~~~~~~~~--~~~~~-----~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~------~ 180 (312)
..++++ +|=.|.+|++.....+.. ....| ...+.+..|+|..-+.|.-.+..|.|++-|++.... .
T Consensus 185 et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl 263 (460)
T COG5170 185 ETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL 263 (460)
T ss_pred heeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence 877755 467899998764332221 12222 345677889998888899999999999999985321 1
Q ss_pred e--eeccc-----ccceeE-EEEEEcCCceEEEEEeCCCeEEEEeCCC-CeEEEEecccc------------cCe---EE
Q 047355 181 F--TLDAH-----EKGINC-IDYFITSDKVYLITGSDDFTVKVWDYET-KTCVQILEGHT------------NNV---TA 236 (312)
Q Consensus 181 ~--~~~~~-----~~~v~~-~~~~~~~~~~~l~sg~~dg~i~vwd~~~-~~~~~~~~~h~------------~~i---~~ 236 (312)
+ ++.+- ...+.+ .++.++++|+++++-.. -+|++||... ..+++++..|. ..| ..
T Consensus 264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFe 342 (460)
T COG5170 264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFE 342 (460)
T ss_pred hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEE
Confidence 1 11111 111111 13446788999988754 3799999864 45777775553 223 34
Q ss_pred EEEeCCCcEEEEEeCCCcEEEEe
Q 047355 237 VCFHPELRIIITASEDGTILIWN 259 (312)
Q Consensus 237 l~~~~~~~~l~s~s~dg~v~iwd 259 (312)
+.|+.|.+.+.+|+..+..-++-
T Consensus 343 isfSgd~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 343 ISFSGDDKHVLSGSYSNNFGIYP 365 (460)
T ss_pred EEecCCcccccccccccceeeec
Confidence 78888888888888776665554
No 275
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.08 E-value=1.3e-09 Score=96.70 Aligned_cols=243 Identities=19% Similarity=0.266 Sum_probs=163.7
Q ss_pred cEEEEEEcC--CCCeEEEEecCCeEEEEeccCC---ceeeeEEecCCceeEEEEeeC-CcEEEEecCCCeEEEEEccCce
Q 047355 19 RVKSVDFHP--TQPWVLASLYSGTVCIWNYHSQ---TTEKSVKVTDSPVRTAKFVAR-EHWIVCGSDDKFIRVFDYNTMA 92 (312)
Q Consensus 19 ~i~~~~~~~--~~~~l~~~~~dg~v~iw~~~~~---~~~~~~~~~~~~v~~~~~~~~-~~~l~~g~~dg~i~iwd~~~~~ 92 (312)
.|-.+.|+| ..++=++......-.+|++... ...-.+.+|...++.+-|.++ ...+++++.|-.+..||+.+..
T Consensus 69 ~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~ 148 (1081)
T KOG0309|consen 69 QVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH 148 (1081)
T ss_pred hhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCC
Confidence 355566665 4456566666677789998532 233345667788999999875 4578899999999999998753
Q ss_pred -eeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeCCCeEEE
Q 047355 93 -SVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQI 171 (312)
Q Consensus 93 -~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~i 171 (312)
++..+..-...-..+.|+-....+++.+..+.+.+||.+.+..+...+.+|...+..+.|+......+.+++.||+|+.
T Consensus 149 ~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkf 228 (1081)
T KOG0309|consen 149 RPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKF 228 (1081)
T ss_pred cceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceee
Confidence 3333333334456788887666677777778899999998877888888899999999998877788999999999999
Q ss_pred EEcCCCcce--eeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEe---------CC-CCeEEEEecccccCeEEEEE
Q 047355 172 WNMDSSAAK--FTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWD---------YE-TKTCVQILEGHTNNVTAVCF 239 (312)
Q Consensus 172 wd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd---------~~-~~~~~~~~~~h~~~i~~l~~ 239 (312)
||....... .+++ ...++.--.+.+-.+|.++.---.+..+..++ .. ..++++.+.||.+.|....|
T Consensus 229 w~y~kSt~e~~~~vt-t~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlW 307 (1081)
T KOG0309|consen 229 WDYSKSTTESKRTVT-TNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLW 307 (1081)
T ss_pred ecccccccccceecc-ccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhh
Confidence 998754322 1111 11222222233333443332222222333333 22 24678899999988766655
Q ss_pred eCCC----------cEEEEEeCCCcEEEEeCCC
Q 047355 240 HPEL----------RIIITASEDGTILIWNATT 262 (312)
Q Consensus 240 ~~~~----------~~l~s~s~dg~v~iwd~~~ 262 (312)
-..+ -.|+|=|.|..+|+|-+..
T Consensus 308 R~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 308 RKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred hhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 3322 2699999999999998754
No 276
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.08 E-value=1.9e-07 Score=83.69 Aligned_cols=288 Identities=14% Similarity=0.167 Sum_probs=195.1
Q ss_pred chhhhhhhhhcccCcEEEEEEcCC------------CCeEEEEecCCeEEEEeccCCceeeeEEecCCceeEEEEeeC--
Q 047355 5 LELQIEKEFIQKSDRVKSVDFHPT------------QPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAR-- 70 (312)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~~~~~------------~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~-- 70 (312)
+.++.......|...|..+.|.|- ...||++.-.|+|.+||+.....+.-+..+..++..++|.+.
T Consensus 43 ~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd 122 (1062)
T KOG1912|consen 43 RSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARD 122 (1062)
T ss_pred hhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccC
Confidence 344555566678899999999752 125666777899999999888777778888889999999863
Q ss_pred -C-cEEEEecCCCeEEEEEccCceeeeeecccccceeEEEEecC-CCEEEEEeCCCcEEEEeCCCCce---e---eeEec
Q 047355 71 -E-HWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPT-FPFVLTASDDKLIKLWDWEKNWE---C---TQTFE 141 (312)
Q Consensus 71 -~-~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~-~~~l~t~s~d~~v~iwd~~~~~~---~---~~~~~ 141 (312)
. ..|++-....++.+|+..+++..-++.-......|+.+.|- .+.++.-+..|.+.+-+.....+ + .+.-.
T Consensus 123 ~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~s 202 (1062)
T KOG1912|consen 123 DSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITS 202 (1062)
T ss_pred cchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEec
Confidence 2 45666666789999999999877666554556677888884 45566666667777766432111 1 11111
Q ss_pred CCcc-------------------------ceEEEEeCCCCCCEEEEEeCCCeEEEEEcCCCcceeeecccccceeEEEEE
Q 047355 142 GHSH-------------------------YVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYF 196 (312)
Q Consensus 142 ~~~~-------------------------~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~ 196 (312)
.|.. +....+|+|.-.+.++.. ....+.++|++-..+.....-...++..+++.
T Consensus 203 d~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~-~prellv~dle~~~~l~vvpier~~akfv~vl 281 (1062)
T KOG1912|consen 203 DHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFIT-FPRELLVFDLEYECCLAVVPIERGGAKFVDVL 281 (1062)
T ss_pred CccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEE-eccceEEEcchhhceeEEEEeccCCcceeEec
Confidence 1111 112346677655554443 46778999998877777776666777777777
Q ss_pred EcCCceEEEEEeCCCeEEEEeCCC----------------Ce---EEEE-------------------------------
Q 047355 197 ITSDKVYLITGSDDFTVKVWDYET----------------KT---CVQI------------------------------- 226 (312)
Q Consensus 197 ~~~~~~~l~sg~~dg~i~vwd~~~----------------~~---~~~~------------------------------- 226 (312)
+.+....+.+...||.+.+|--+. +. +++.
T Consensus 282 P~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w 361 (1062)
T KOG1912|consen 282 PDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFW 361 (1062)
T ss_pred cCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHH
Confidence 777777788888888888884322 00 0000
Q ss_pred -----------------------------------------ecccccCeEEEEEeC-----------CC-------cEEE
Q 047355 227 -----------------------------------------LEGHTNNVTAVCFHP-----------EL-------RIII 247 (312)
Q Consensus 227 -----------------------------------------~~~h~~~i~~l~~~~-----------~~-------~~l~ 247 (312)
-.+|....++...+| .+ +++|
T Consensus 362 ~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvA 441 (1062)
T KOG1912|consen 362 QLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVA 441 (1062)
T ss_pred hhhcCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEE
Confidence 001333333333322 11 3689
Q ss_pred EEeCCCcEEEEeCCCcceeeecccCccceEEEEEecCCCeEEEEec
Q 047355 248 TASEDGTILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGCD 293 (312)
Q Consensus 248 s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 293 (312)
.|...|+|.+.|+.+..+...+..|...|.++.|.....++.++..
T Consensus 442 vGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~sslvSfsys 487 (1062)
T KOG1912|consen 442 VGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLVSFSYS 487 (1062)
T ss_pred eecCCceEEEEEecchhhhhhhcccccceeeeeeccceeEEEeeec
Confidence 9999999999999999999999999999999999888877776654
No 277
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.06 E-value=1e-06 Score=84.47 Aligned_cols=281 Identities=15% Similarity=0.184 Sum_probs=175.9
Q ss_pred ccCcEEEEEEcCCCCeEEEEecCCeEEEE----eccCCceeeeEEecCCceeEEEEeeCCcEEEEecCCCeEEEEEccCc
Q 047355 16 KSDRVKSVDFHPTQPWVLASLYSGTVCIW----NYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTM 91 (312)
Q Consensus 16 ~~~~i~~~~~~~~~~~l~~~~~dg~v~iw----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~ 91 (312)
..+.|.++.|-++...++.+..+|.|.+. +.... ........+..|.+++|+||++.|+.++.++++.+...+ .
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~-~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~-f 151 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDED-EIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRD-F 151 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCc-eeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEecc-c
Confidence 45789999999999999999999999999 54433 233445567789999999999999999999998887421 1
Q ss_pred ee------------------------eeeecc------------------------cccceeEEEEecCCCEEEEEeC--
Q 047355 92 AS------------------------VKEFEA------------------------HEDYIRSLAVHPTFPFVLTASD-- 121 (312)
Q Consensus 92 ~~------------------------~~~~~~------------------------h~~~i~~~~~~~~~~~l~t~s~-- 121 (312)
.. ...|.+ +.+.-..++|-.||.++++.+-
T Consensus 152 d~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~ 231 (928)
T PF04762_consen 152 DPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEP 231 (928)
T ss_pred eEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEc
Confidence 10 011110 1123346788899999987663
Q ss_pred -C---CcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeC---CCeEEEEEcCCCcc-eeeec--cccccee
Q 047355 122 -D---KLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASL---DGTIQIWNMDSSAA-KFTLD--AHEKGIN 191 (312)
Q Consensus 122 -d---~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~---dg~v~iwd~~~~~~-~~~~~--~~~~~v~ 191 (312)
. ..+|+|+.+.. .....+.-...-..++|.|. ++++++.-. ...|.+|.-+..+. .+.+. .....+.
T Consensus 232 ~~~~~R~iRVy~ReG~--L~stSE~v~gLe~~l~WrPs-G~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~ 308 (928)
T PF04762_consen 232 ETGSRRVIRVYSREGE--LQSTSEPVDGLEGALSWRPS-GNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVI 308 (928)
T ss_pred CCCceeEEEEECCCce--EEeccccCCCccCCccCCCC-CCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceee
Confidence 2 57999986532 21222222222345688885 467776653 34567776543221 12222 2334566
Q ss_pred EEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEE--ecc-cccCeEEEEEeCCC-cEEEEEeCCCcEEEEeC----CCc
Q 047355 192 CIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQI--LEG-HTNNVTAVCFHPEL-RIIITASEDGTILIWNA----TTF 263 (312)
Q Consensus 192 ~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~--~~~-h~~~i~~l~~~~~~-~~l~s~s~dg~v~iwd~----~~~ 263 (312)
.+. +++++..||.--.|. |.+|-..+...+.. +.- ....+..+.|+|.. ..|.....+|.+..++. ...
T Consensus 309 ~l~--Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s 385 (928)
T PF04762_consen 309 ELA--WNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRS 385 (928)
T ss_pred EEE--ECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEec
Confidence 665 477888888877665 99998876653322 221 12345569999854 34555555555544432 111
Q ss_pred -----------------c----------eeeecc----cCccceEEEEEecCCCeEEEEecCCeEEEEeccC
Q 047355 264 -----------------R----------LQNTLS----SGLERVWSIGYKKGSNQVAFGCDNGTLIVKIGNS 304 (312)
Q Consensus 264 -----------------~----------~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~~g~i~v~~~~~ 304 (312)
+ +...+. .-...|..++|++++..+++-..||.+.+..+..
T Consensus 386 ~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~ 457 (928)
T PF04762_consen 386 PGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDL 457 (928)
T ss_pred CCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecC
Confidence 0 001111 1134689999999999999999999988887543
No 278
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.05 E-value=8.1e-07 Score=72.37 Aligned_cols=219 Identities=13% Similarity=0.024 Sum_probs=133.7
Q ss_pred CCeEEEEeccCCceeeeEEecCCceeEEE--EeeCCcEEEEecCCCeEEEEEccCceeeeeecccccceeEEEEecCCCE
Q 047355 38 SGTVCIWNYHSQTTEKSVKVTDSPVRTAK--FVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPF 115 (312)
Q Consensus 38 dg~v~iw~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~ 115 (312)
+|+|..||..+++.+-...... ...... ...++..+++++.++.|..||..+++.+-.+.. ...+..... ..+..
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~-~~~~~ 78 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGP-GIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPV-VDGGR 78 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSS-SCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEE-EETTE
T ss_pred CCEEEEEECCCCCEEEEEECCC-CCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceee-ecccc
Confidence 6888999988887776665422 122222 444677888888999999999999887665544 222211112 23445
Q ss_pred EEEEeCCCcEEEEeCCCCceeeeEecCCc---c--ceEEEEeCCCCCCEEEEEeCCCeEEEEEcCCCcceeeecccccce
Q 047355 116 VLTASDDKLIKLWDWEKNWECTQTFEGHS---H--YVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGI 190 (312)
Q Consensus 116 l~t~s~d~~v~iwd~~~~~~~~~~~~~~~---~--~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v 190 (312)
++.+..++.+..+|..+....-....... . ......+. ...++.+..++.|..+|+++++.+..........
T Consensus 79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~ 155 (238)
T PF13360_consen 79 VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVD---GDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRG 155 (238)
T ss_dssp EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEE---TTEEEEEETCSEEEEEETTTTEEEEEEESSTT-S
T ss_pred cccccceeeeEecccCCcceeeeeccccccccccccccCceEe---cCEEEEEeccCcEEEEecCCCcEEEEeecCCCCC
Confidence 66666788999999777644333122110 1 11111221 4678888889999999999998877665533221
Q ss_pred -e--------EEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEecccccCeEEEEEeCCCcEEEEEeCCCcEEEEeCC
Q 047355 191 -N--------CIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITASEDGTILIWNAT 261 (312)
Q Consensus 191 -~--------~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~s~dg~v~iwd~~ 261 (312)
. ..... ..++ .+..++.++.+..+|.++++.+-... ...+.. ...+++..|+.++.++.|..||.+
T Consensus 156 ~~~~~~~~~~~~~~~-~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~--~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~ 230 (238)
T PF13360_consen 156 SSPISSFSDINGSPV-ISDG-RVYVSSGDGRVVAVDLATGEKLWSKP--ISGIYS-LPSVDGGTLYVTSSDGRLYALDLK 230 (238)
T ss_dssp S--EEEETTEEEEEE-CCTT-EEEEECCTSSEEEEETTTTEEEEEEC--SS-ECE-CEECCCTEEEEEETTTEEEEEETT
T ss_pred CcceeeecccccceE-EECC-EEEEEcCCCeEEEEECCCCCEEEEec--CCCccC-CceeeCCEEEEEeCCCEEEEEECC
Confidence 0 11212 2234 56666667754444999998663222 222332 145667778888899999999999
Q ss_pred Ccceee
Q 047355 262 TFRLQN 267 (312)
Q Consensus 262 ~~~~~~ 267 (312)
+++...
T Consensus 231 tG~~~W 236 (238)
T PF13360_consen 231 TGKVVW 236 (238)
T ss_dssp TTEEEE
T ss_pred CCCEEe
Confidence 987653
No 279
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.04 E-value=3.2e-06 Score=69.30 Aligned_cols=217 Identities=14% Similarity=0.147 Sum_probs=134.2
Q ss_pred EEEEcC-CCCeEEEEecCCeEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEecCCCeEEEEEccCceeeeeecc-
Q 047355 22 SVDFHP-TQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEA- 99 (312)
Q Consensus 22 ~~~~~~-~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~- 99 (312)
...|++ ++..+++-...+.|..|+..+.+.. .+.... ...+.+...+..++.+...+ +.++|..+++.......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~-~~~~~~--~~G~~~~~~~g~l~v~~~~~-~~~~d~~~g~~~~~~~~~ 79 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVE-VIDLPG--PNGMAFDRPDGRLYVADSGG-IAVVDPDTGKVTVLADLP 79 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEE-EEESSS--EEEEEEECTTSEEEEEETTC-EEEEETTTTEEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEE-EEecCC--CceEEEEccCCEEEEEEcCc-eEEEecCCCcEEEEeecc
Confidence 567888 5666666667899999998776442 233222 55666773335555555554 45569887754333222
Q ss_pred ----cccceeEEEEecCCCEEEEEeCC--------CcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeCCC
Q 047355 100 ----HEDYIRSLAVHPTFPFVLTASDD--------KLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDG 167 (312)
Q Consensus 100 ----h~~~i~~~~~~~~~~~l~t~s~d--------~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg 167 (312)
.....+.+++.|+|++.++.... |.+..++.. . .. ......-.....++|+|.+..++++-+..+
T Consensus 80 ~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~-~~-~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~ 156 (246)
T PF08450_consen 80 DGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-G-KV-TVVADGLGFPNGIAFSPDGKTLYVADSFNG 156 (246)
T ss_dssp TTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-S-EE-EEEEEEESSEEEEEEETTSSEEEEEETTTT
T ss_pred CCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-C-eE-EEEecCcccccceEECCcchheeecccccc
Confidence 33457889999999977776544 446666654 2 22 222222345577889986544566778889
Q ss_pred eEEEEEcCCCcc----eeee-ccccc--ceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEecccccCeEEEEEe
Q 047355 168 TIQIWNMDSSAA----KFTL-DAHEK--GINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFH 240 (312)
Q Consensus 168 ~v~iwd~~~~~~----~~~~-~~~~~--~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~i~~l~~~ 240 (312)
.|..+++..... ...+ ..... ....+ ..+.+|.+.++....+.|.+++.+ ++.+..+......+++++|-
T Consensus 157 ~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~--~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fg 233 (246)
T PF08450_consen 157 RIWRFDLDADGGELSNRRVFIDFPGGPGYPDGL--AVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFG 233 (246)
T ss_dssp EEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEE--EEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEE
T ss_pred eeEEEeccccccceeeeeeEEEcCCCCcCCCcc--eEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEE
Confidence 999999864332 1111 11111 12333 357788888888889999999987 88887777665689999995
Q ss_pred -CCCcEEEE
Q 047355 241 -PELRIIIT 248 (312)
Q Consensus 241 -~~~~~l~s 248 (312)
++.+.|+.
T Consensus 234 g~~~~~L~v 242 (246)
T PF08450_consen 234 GPDGKTLYV 242 (246)
T ss_dssp STTSSEEEE
T ss_pred CCCCCEEEE
Confidence 56555443
No 280
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.02 E-value=3.3e-07 Score=78.42 Aligned_cols=264 Identities=12% Similarity=0.122 Sum_probs=159.0
Q ss_pred ccCcEEEEEEcCCCCeEEEEecCCeEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEecCC---------------
Q 047355 16 KSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDD--------------- 80 (312)
Q Consensus 16 ~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d--------------- 80 (312)
..-++..++|+|.|.+|++... ..|.+|..........+ ....|..+.|+|.+++|.+=+..
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~-~~V~~~~g~~~~~l~~~--~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~ 107 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHA-AGVECWGGPSKAKLVRF--RHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSK 107 (561)
T ss_pred cCcchhheeecCcchheehhhc-cceEEccccchhheeee--ecCCceecccCcccceeeeeccCCccChhhccCCcccc
Confidence 4458889999999999987655 44789988766544444 34568889999999998775433
Q ss_pred CeEEEEEccCceeeeeecccccc--ee-EEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEecC-CccceEEEEeCCCC
Q 047355 81 KFIRVFDYNTMASVKEFEAHEDY--IR-SLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEG-HSHYVMQSAFNPKD 156 (312)
Q Consensus 81 g~i~iwd~~~~~~~~~~~~h~~~--i~-~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~ 156 (312)
..+.+||..++..+..+.....+ .. -+.|+-+.++++-.. ...++|+++..+... ..+.. ....+....++|.+
T Consensus 108 n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv-~~sl~i~e~t~n~~~-~p~~~lr~~gi~dFsisP~~ 185 (561)
T COG5354 108 NNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVV-GSSLYIHEITDNIEE-HPFKNLRPVGILDFSISPEG 185 (561)
T ss_pred CceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhc-cCeEEEEecCCcccc-CchhhccccceeeEEecCCC
Confidence 34999999999888888766655 44 467777777766442 356889986332111 11111 12345566677752
Q ss_pred -CCEEEE-----EeCCCeEEEEEcCCCcceeeecccccceeEEEEEEcCCceEEEEE-----------eCCCeEEEEeCC
Q 047355 157 -LNTFAS-----ASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITG-----------SDDFTVKVWDYE 219 (312)
Q Consensus 157 -~~~~~s-----~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg-----------~~dg~i~vwd~~ 219 (312)
...|+. ...++++++|.+..+..+.+..-.+..-..+.| .+.|.+++.= -...++++++++
T Consensus 186 n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW--~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~ 263 (561)
T COG5354 186 NHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKW--QVLGKYLLVLVMTHTKSNKSYFGESNLYLLRIT 263 (561)
T ss_pred CCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEE--ecCCceEEEEEEEeeecccceeccceEEEEeec
Confidence 222332 356778999998755444322111111111222 2222222210 023468888887
Q ss_pred CCeEEEEecccccCeEEEEEeCCCcEEEEEe--CCCcEEEEeCCCcceeeecccCccceEEEEEecCCCeEEE
Q 047355 220 TKTCVQILEGHTNNVTAVCFHPELRIIITAS--EDGTILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAF 290 (312)
Q Consensus 220 ~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~s--~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 290 (312)
...+.... ...++|...+|.|+++.+++.+ -+..+-++|++.. +...+... .-..+-|+|.+.++++
T Consensus 264 e~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~Pe~--~rNT~~fsp~~r~il~ 332 (561)
T COG5354 264 ERSIPVEK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFPEQ--KRNTIFFSPHERYILF 332 (561)
T ss_pred ccccceec-cccccceeeeecccCCceeEEecccccceeecccccc-eEEecCCc--ccccccccCcccEEEE
Confidence 44433332 5678999999999988877666 4667888888653 33333222 2224456666666554
No 281
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.01 E-value=7.5e-08 Score=85.57 Aligned_cols=247 Identities=15% Similarity=0.137 Sum_probs=164.4
Q ss_pred cchhhhhhhhhcccCcEEEEEEcCCCCeEEEEecCCeEEEEeccCCceeeeE--EecCCceeEEEEeeCCcEEEEecCCC
Q 047355 4 PLELQIEKEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSV--KVTDSPVRTAKFVAREHWIVCGSDDK 81 (312)
Q Consensus 4 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~g~~dg 81 (312)
+.-+.+...+.+|+..|.-+.|+...+.|-+...+|.|.+|-+-++.....+ .-..+.|.++.|+.+|..|+..-+||
T Consensus 58 ~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDG 137 (1189)
T KOG2041|consen 58 ASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDG 137 (1189)
T ss_pred ccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccC
Confidence 4456677889999999999999999999999999999999987554322211 12345688899999999999999999
Q ss_pred eEEEEEccCceee-eeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeee----------EecCCccceEEE
Q 047355 82 FIRVFDYNTMASV-KEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQ----------TFEGHSHYVMQS 150 (312)
Q Consensus 82 ~i~iwd~~~~~~~-~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~----------~~~~~~~~v~~~ 150 (312)
.|.+=.++..... +++++ .-...+.|+++.+.++.+-.+|.+.++|...++.... .+......+-..
T Consensus 138 avIVGsvdGNRIwgKeLkg--~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i 215 (1189)
T KOG2041|consen 138 AVIVGSVDGNRIWGKELKG--QLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEI 215 (1189)
T ss_pred CEEEEeeccceecchhcch--heccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccce
Confidence 9888777654332 22322 1245688999999888898999999999765432110 111111112222
Q ss_pred E-------eCCCCCCEEEEEeCCCeEEEEEcCCCcceeeecccccceeEEEEEEcCCceEEEEEeCC---------CeEE
Q 047355 151 A-------FNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDD---------FTVK 214 (312)
Q Consensus 151 ~-------~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d---------g~i~ 214 (312)
. ..|++...|+.|-.+|.+++.--.+......+... ..+.... .+++|..++.++.+ +.|.
T Consensus 216 ~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtg-m~~vgak--Wnh~G~vLAvcG~~~da~~~~d~n~v~ 292 (1189)
T KOG2041|consen 216 EWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTG-MKIVGAK--WNHNGAVLAVCGNDSDADEPTDSNKVH 292 (1189)
T ss_pred eeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecc-cEeecce--ecCCCcEEEEccCcccccCccccceEE
Confidence 2 34557788999999999988655444333222221 2233333 47888888887754 2466
Q ss_pred EEeCCCCeEEEEecccccCeEEEEEeCCCcEEEEEeCCCcEEE
Q 047355 215 VWDYETKTCVQILEGHTNNVTAVCFHPELRIIITASEDGTILI 257 (312)
Q Consensus 215 vwd~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~s~dg~v~i 257 (312)
+|.. -|+.+.+++-..+.|++++|-..|-.+|-+- |+.|++
T Consensus 293 Fysp-~G~i~gtlkvpg~~It~lsWEg~gLriA~Av-dsfiyf 333 (1189)
T KOG2041|consen 293 FYSP-YGHIVGTLKVPGSCITGLSWEGTGLRIAIAV-DSFIYF 333 (1189)
T ss_pred Eecc-chhheEEEecCCceeeeeEEcCCceEEEEEe-cceEEE
Confidence 6654 3566777777788899999977665544433 334433
No 282
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.01 E-value=1.8e-07 Score=73.87 Aligned_cols=193 Identities=10% Similarity=0.040 Sum_probs=123.8
Q ss_pred eCCcEEEEecCCCeEEEEEccCce-eeeeecccccceeEEEEecCC-CEEEEEeCCCcEEEEeCCCCceeeeEecCCcc-
Q 047355 69 AREHWIVCGSDDKFIRVFDYNTMA-SVKEFEAHEDYIRSLAVHPTF-PFVLTASDDKLIKLWDWEKNWECTQTFEGHSH- 145 (312)
Q Consensus 69 ~~~~~l~~g~~dg~i~iwd~~~~~-~~~~~~~h~~~i~~~~~~~~~-~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~- 145 (312)
....+|+.|+.-|...+|...+.+ .++....|...|+-+.-.-+. .-+..++.|.++++.++..... .+..|..
T Consensus 82 ~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~---~~~~h~~~ 158 (344)
T KOG4532|consen 82 NKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSN---KFAVHNQN 158 (344)
T ss_pred ccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcc---cceeeccc
Confidence 345688999999999999987543 334444444433322111111 1255688899999998764422 1222322
Q ss_pred -ceEEEEeCCCCCCEEEEEeCCCeEEEEEcCCCcc--eeeeccc-ccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCC
Q 047355 146 -YVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAA--KFTLDAH-EKGINCIDYFITSDKVYLITGSDDFTVKVWDYETK 221 (312)
Q Consensus 146 -~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~--~~~~~~~-~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~ 221 (312)
.+.++.+++ ++.+.++.+....|..|.++.... .....+. ...-.+.. ++.....+|++..||.+.+||++..
T Consensus 159 ~~~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S--~s~~~~~FAv~~Qdg~~~I~DVR~~ 235 (344)
T KOG4532|consen 159 LTQNSLHYSN-DPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNS--FSENDLQFAVVFQDGTCAIYDVRNM 235 (344)
T ss_pred cceeeeEEcC-CCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeee--eccCcceEEEEecCCcEEEEEeccc
Confidence 266777887 567888888888999999876432 2212221 22223333 4566778999999999999999864
Q ss_pred eEE-----EEecccccCeEEEEEeCCCc--EEEEEeCCCcEEEEeCCCcceee
Q 047355 222 TCV-----QILEGHTNNVTAVCFHPELR--IIITASEDGTILIWNATTFRLQN 267 (312)
Q Consensus 222 ~~~-----~~~~~h~~~i~~l~~~~~~~--~l~s~s~dg~v~iwd~~~~~~~~ 267 (312)
... ..-..|.+.++.+.|++-|. +|+-.-.-+.+.+-|+++++-.+
T Consensus 236 ~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q 288 (344)
T KOG4532|consen 236 ATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQ 288 (344)
T ss_pred ccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceee
Confidence 322 22345889999999998654 44444445789999998876443
No 283
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=99.00 E-value=1.7e-09 Score=61.17 Aligned_cols=39 Identities=28% Similarity=0.799 Sum_probs=36.7
Q ss_pred CeEEEEecccccCeEEEEEeCCCcEEEEEeCCCcEEEEe
Q 047355 221 KTCVQILEGHTNNVTAVCFHPELRIIITASEDGTILIWN 259 (312)
Q Consensus 221 ~~~~~~~~~h~~~i~~l~~~~~~~~l~s~s~dg~v~iwd 259 (312)
++++..+.+|.++|++++|+|++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 367889999999999999999999999999999999997
No 284
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.00 E-value=1.9e-06 Score=68.88 Aligned_cols=233 Identities=12% Similarity=0.164 Sum_probs=130.3
Q ss_pred EEEcCCCCeEEEEecCCeEEEEeccCC--ceeeeEEe---cCCceeEEEEeeCCcEEEEecCCCeEEEEEccCceeeeee
Q 047355 23 VDFHPTQPWVLASLYSGTVCIWNYHSQ--TTEKSVKV---TDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEF 97 (312)
Q Consensus 23 ~~~~~~~~~l~~~~~dg~v~iw~~~~~--~~~~~~~~---~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~ 97 (312)
++.+++|+.||+. .|..|.|=..... ..+..... .....+.++|++|+..|+.+...|+|++||+...... .+
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf-~I 80 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELF-VI 80 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeE-Ec
Confidence 5667888766644 5566666543221 12222222 2345788999999999999999999999998753322 22
Q ss_pred c-------ccccceeEEEEecCC------CEEEEEeCCCcEEEEeCC----CCceeeeEe--cC-CccceEEEEeCCCCC
Q 047355 98 E-------AHEDYIRSLAVHPTF------PFVLTASDDKLIKLWDWE----KNWECTQTF--EG-HSHYVMQSAFNPKDL 157 (312)
Q Consensus 98 ~-------~h~~~i~~~~~~~~~------~~l~t~s~d~~v~iwd~~----~~~~~~~~~--~~-~~~~v~~~~~~~~~~ 157 (312)
. .-...|..|.|-+.. ..|+.-..+|.++-|-+. ........+ .. +..-+..+.|+|..
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h- 159 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH- 159 (282)
T ss_pred CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC-
Confidence 1 123456677665432 135556667777766542 122222332 22 35578889999865
Q ss_pred CEEEEEe-CCCeEEEEEcCCCcceeeecccccceeEEEEEEcCCceE-EEEEeCCCe------EEEEeCCCCeEEEEecc
Q 047355 158 NTFASAS-LDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVY-LITGSDDFT------VKVWDYETKTCVQILEG 229 (312)
Q Consensus 158 ~~~~s~s-~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-l~sg~~dg~------i~vwd~~~~~~~~~~~~ 229 (312)
++|+.|+ ....-.. -.+...++.+.... +....+ .++..+|+. -.+|.+-+.+.......
T Consensus 160 ~LLlVgG~~~~~~~~-----------s~a~~~GLtaWRiL-~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~ 227 (282)
T PF15492_consen 160 RLLLVGGCEQNQDGM-----------SKASSCGLTAWRIL-SDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQ 227 (282)
T ss_pred CEEEEeccCCCCCcc-----------ccccccCceEEEEc-CCCCcEEEccccCccccccccccceeeccceeeeecccc
Confidence 5555554 3331000 00112233332221 111111 122222221 12333322222222223
Q ss_pred cccCeEEEEEeCCCcEEEEEeCCCcEEEEeCCCcceeeecc
Q 047355 230 HTNNVTAVCFHPELRIIITASEDGTILIWNATTFRLQNTLS 270 (312)
Q Consensus 230 h~~~i~~l~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~ 270 (312)
..+.|..+..+||++.||+...+|.|.+|++++.+++.+..
T Consensus 228 ~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~ 268 (282)
T PF15492_consen 228 EQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWK 268 (282)
T ss_pred CCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccc
Confidence 45679999999999999999999999999999877765443
No 285
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.00 E-value=4.6e-07 Score=77.57 Aligned_cols=269 Identities=13% Similarity=0.148 Sum_probs=169.9
Q ss_pred CcEEEEEEcCCCCeEEEEecCC---------------eEEEEeccCCceeeeEEecCCc---eeEEEEeeCCcEEEEecC
Q 047355 18 DRVKSVDFHPTQPWVLASLYSG---------------TVCIWNYHSQTTEKSVKVTDSP---VRTAKFVAREHWIVCGSD 79 (312)
Q Consensus 18 ~~i~~~~~~~~~~~l~~~~~dg---------------~v~iw~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~l~~g~~ 79 (312)
..|+-+.|+|.+++|.+=...+ .+.+||..++.....+.....+ ..-+.|+.++.+++=- .
T Consensus 72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v 150 (561)
T COG5354 72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-V 150 (561)
T ss_pred CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-c
Confidence 4689999999999999865433 4899999999888877765544 3367888887765533 3
Q ss_pred CCeEEEEEccCceee-eeecc-cccceeEEEEecCCC--EEE-----EEeCCCcEEEEeCCCCcee-eeEecCCccceEE
Q 047355 80 DKFIRVFDYNTMASV-KEFEA-HEDYIRSLAVHPTFP--FVL-----TASDDKLIKLWDWEKNWEC-TQTFEGHSHYVMQ 149 (312)
Q Consensus 80 dg~i~iwd~~~~~~~-~~~~~-h~~~i~~~~~~~~~~--~l~-----t~s~d~~v~iwd~~~~~~~-~~~~~~~~~~v~~ 149 (312)
...+.++++ +.... ..+.. ....|....++|.+. .|+ ..+..+.+++|.+..+... .+.+.. ..-..
T Consensus 151 ~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk--~~~~q 227 (561)
T COG5354 151 GSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFK--VSGVQ 227 (561)
T ss_pred cCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEe--ecccE
Confidence 457899986 32211 11111 124578888888743 233 2567888999987643221 111111 11134
Q ss_pred EEeCCCCCCEEE-EEe---------CCCeEEEEEcCCCcceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCC
Q 047355 150 SAFNPKDLNTFA-SAS---------LDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYE 219 (312)
Q Consensus 150 ~~~~~~~~~~~~-s~s---------~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~ 219 (312)
+.|++.+..+++ +-. ....++++++......... ....+|....|.+..++.-+++|-.+-.+.++|++
T Consensus 228 LkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr 306 (561)
T COG5354 228 LKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLR 306 (561)
T ss_pred EEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceec-cccccceeeeecccCCceeEEecccccceeecccc
Confidence 556554322211 111 1245777777643332222 44567777777666666667777788999999998
Q ss_pred CCeEEEEecccccCeEEEEEeCCCcEEEEEeCC---CcEEEEeCCCc-ceeeecccCccceEEEEEecCCCeEEEEecCC
Q 047355 220 TKTCVQILEGHTNNVTAVCFHPELRIIITASED---GTILIWNATTF-RLQNTLSSGLERVWSIGYKKGSNQVAFGCDNG 295 (312)
Q Consensus 220 ~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~s~d---g~v~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g 295 (312)
.. ....+ ....=+.+-|+|.+++++.++-| |.+-+||.... ++...+.+... .-+.|+||++.+.+..+.-
T Consensus 307 ~N-l~~~~--Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~--s~~~wspd~qF~~~~~ts~ 381 (561)
T COG5354 307 GN-LRFYF--PEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNT--SYCDWSPDGQFYDTDTTSE 381 (561)
T ss_pred cc-eEEec--CCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCCc--eEeeccCCceEEEecCCCc
Confidence 65 44333 33445678999999999998876 67999997653 44445554433 3578999999998877644
Q ss_pred e
Q 047355 296 T 296 (312)
Q Consensus 296 ~ 296 (312)
.
T Consensus 382 k 382 (561)
T COG5354 382 K 382 (561)
T ss_pred c
Confidence 4
No 286
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.98 E-value=1.5e-07 Score=84.42 Aligned_cols=240 Identities=13% Similarity=0.196 Sum_probs=168.5
Q ss_pred cEEEEEEcCCCCeEEEEecCCeEEEEeccCCceeeeEEecCCceeEEEEeeCC------------cEEEEecCCCeEEEE
Q 047355 19 RVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVARE------------HWIVCGSDDKFIRVF 86 (312)
Q Consensus 19 ~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~------------~~l~~g~~dg~i~iw 86 (312)
.-.++.|+|.| |++-+.-..|.+-|..+.+.++++..|...|+.+.|.|.. -.|+++...|.|.+|
T Consensus 17 N~~A~Dw~~~G--LiAygshslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~ 94 (1062)
T KOG1912|consen 17 NRNAADWSPSG--LIAYGSHSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILV 94 (1062)
T ss_pred cccccccCccc--eEEEecCceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEE
Confidence 46788899888 5555556778888988888888999999999999998631 246778888999999
Q ss_pred EccCceeeeeecccccceeEEEEecC---C-CEEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEE
Q 047355 87 DYNTMASVKEFEAHEDYIRSLAVHPT---F-PFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFAS 162 (312)
Q Consensus 87 d~~~~~~~~~~~~h~~~i~~~~~~~~---~-~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s 162 (312)
|......+..+..|.+++..++|-+. . .+++.-..-..+-+|+..++.. ..++........+..+.|.+...|..
T Consensus 95 d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k-~Wk~~ys~~iLs~f~~DPfd~rh~~~ 173 (1062)
T KOG1912|consen 95 DFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEK-FWKYDYSHEILSCFRVDPFDSRHFCV 173 (1062)
T ss_pred EehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCce-eeccccCCcceeeeeeCCCCcceEEE
Confidence 99988888889999999999998763 2 3566666678899998776633 34444445566678889998888888
Q ss_pred EeCCCeEEEEEcCCCcc------eeee-ccccc-----------------------ceeEEEEEEcCCceEEEEEeCCCe
Q 047355 163 ASLDGTIQIWNMDSSAA------KFTL-DAHEK-----------------------GINCIDYFITSDKVYLITGSDDFT 212 (312)
Q Consensus 163 ~s~dg~v~iwd~~~~~~------~~~~-~~~~~-----------------------~v~~~~~~~~~~~~~l~sg~~dg~ 212 (312)
-+..|.+.+-+.-.... .+++ ..|.. ...|..+.++|.-+-++-......
T Consensus 174 l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~pre 253 (1062)
T KOG1912|consen 174 LGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRE 253 (1062)
T ss_pred EccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccc
Confidence 88888888877642111 1111 11111 011222222332222233345678
Q ss_pred EEEEeCCCCeEEEEecccccCeEEEEEeCCC--cEEEEEeCCCcEEEEeCC
Q 047355 213 VKVWDYETKTCVQILEGHTNNVTAVCFHPEL--RIIITASEDGTILIWNAT 261 (312)
Q Consensus 213 i~vwd~~~~~~~~~~~~h~~~i~~l~~~~~~--~~l~s~s~dg~v~iwd~~ 261 (312)
+.++|++-..++....-.++.+.-+.+-|++ ..|++.-.||.+.+|--+
T Consensus 254 llv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk 304 (1062)
T KOG1912|consen 254 LLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRK 304 (1062)
T ss_pred eEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEee
Confidence 9999998777777776667767777777765 469999999999999543
No 287
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.96 E-value=5.8e-08 Score=76.21 Aligned_cols=198 Identities=13% Similarity=0.102 Sum_probs=116.6
Q ss_pred EEEEEEcCCCCeEEEEecCCeEEEEeccCCce------------eeeEEecCCceeEEEEeeCCcEEEEecCCCeEEEEE
Q 047355 20 VKSVDFHPTQPWVLASLYSGTVCIWNYHSQTT------------EKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFD 87 (312)
Q Consensus 20 i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~------------~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd 87 (312)
|..+.|..+ -.|+++..++.+.........+ ...+..+..+-..-..+.-+..++++..||.+.+++
T Consensus 39 ~~~~~~v~~-~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s 117 (319)
T KOG4714|consen 39 LSKVSLSAE-YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFS 117 (319)
T ss_pred EEEeechhh-heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEe
Confidence 677777543 3566666665555444322211 122332222222222333456799999999999998
Q ss_pred ccCceee-eeecccccceeEEEEecCCCEEEEEeC-----CCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEE
Q 047355 88 YNTMASV-KEFEAHEDYIRSLAVHPTFPFVLTASD-----DKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFA 161 (312)
Q Consensus 88 ~~~~~~~-~~~~~h~~~i~~~~~~~~~~~l~t~s~-----d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 161 (312)
.+..... .+...-...-.+..+-..++++.++.. -+..+.|+.+........... ...+..++-+|...+.++
T Consensus 118 ~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~-~~~v~~l~~hp~qq~~v~ 196 (319)
T KOG4714|consen 118 TDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKA-LDAVTALCSHPAQQHLVC 196 (319)
T ss_pred chHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccccc-cccchhhhCCcccccEEE
Confidence 7652211 111111111223333344555544431 233455554432111111111 123777788888888999
Q ss_pred EEeCCCeEEEEEcCCCc-ceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCC
Q 047355 162 SASLDGTIQIWNMDSSA-AKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYET 220 (312)
Q Consensus 162 s~s~dg~v~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~ 220 (312)
.|+.||.+-+||.++.. +...+.+|+.++..+-|.+. ++.-|+++++||.+.-||..+
T Consensus 197 cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk-~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 197 CGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPK-NPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred EecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCC-CchheeEecCCCcEEEEcCCC
Confidence 99999999999999863 34456789999999988654 556688999999999999764
No 288
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.94 E-value=9.7e-07 Score=76.41 Aligned_cols=275 Identities=13% Similarity=0.184 Sum_probs=156.2
Q ss_pred cEEEEEEcCCCCeEEEEec-----------CCeEEEEeccCCceeeeEEecCC---ceeEEEEeeCCcEEEEecCCCeEE
Q 047355 19 RVKSVDFHPTQPWVLASLY-----------SGTVCIWNYHSQTTEKSVKVTDS---PVRTAKFVAREHWIVCGSDDKFIR 84 (312)
Q Consensus 19 ~i~~~~~~~~~~~l~~~~~-----------dg~v~iw~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~g~~dg~i~ 84 (312)
.|.-+.|||..++|++-+. ...++|||+.++...+.|....+ ...-..|+.|+++++.-.. ..|.
T Consensus 251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sis 329 (698)
T KOG2314|consen 251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSIS 329 (698)
T ss_pred CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEE
Confidence 4788999999999998652 26799999999988888876332 2344578889998886655 5789
Q ss_pred EEEccCceeeeeecccccceeEEEEecCCCEEEEEeCC-----CcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCE
Q 047355 85 VFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDD-----KLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNT 159 (312)
Q Consensus 85 iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d-----~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 159 (312)
+|+..+...+..-.-.-..|....|+|.+.+||.=.-. ..+-+..+... +.++...-+.-.-..+.|- +++.+
T Consensus 330 IyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~-~~iRt~nlfnVsDckLhWQ-k~gdy 407 (698)
T KOG2314|consen 330 IYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSK-REIRTKNLFNVSDCKLHWQ-KSGDY 407 (698)
T ss_pred EEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCcc-ceeeeccceeeeccEEEec-cCCcE
Confidence 99887755443333333568888999998777643221 11222222211 1111111010001112222 12233
Q ss_pred EEEE----------eCCCeEEEEEcCCCcceeeecccccceeEEEEEEcCCceEEEEEe-CCCeEEEEeCCC-C---eEE
Q 047355 160 FASA----------SLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGS-DDFTVKVWDYET-K---TCV 224 (312)
Q Consensus 160 ~~s~----------s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~-~dg~i~vwd~~~-~---~~~ 224 (312)
|+.- +.-..+.|+.++........-.-...+-..+|.+..+...+++|. ...++.+|..++ . +++
T Consensus 408 LcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lV 487 (698)
T KOG2314|consen 408 LCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLV 487 (698)
T ss_pred EEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhh
Confidence 3321 111134455554332211111122334444544333333333333 235788888763 2 223
Q ss_pred EEecccccCeEEEEEeCCCcEEEEEe---CCCcEEEEeCCCcceeeecccCccceEEEEEecCCCeEEEEecCCeEE
Q 047355 225 QILEGHTNNVTAVCFHPELRIIITAS---EDGTILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGCDNGTLI 298 (312)
Q Consensus 225 ~~~~~h~~~i~~l~~~~~~~~l~s~s---~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~ 298 (312)
..+. ....+.+-|+|.|++++.+. ..|.+.++|..-..+..+-.........+.|.|.|.++++++.-.+..
T Consensus 488 k~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wrhk 562 (698)
T KOG2314|consen 488 KELD--KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWRHK 562 (698)
T ss_pred hhhc--ccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeeehhhhc
Confidence 3333 24567899999999887664 467899999864333333333345566789999999999998866544
No 289
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.94 E-value=6.1e-09 Score=84.68 Aligned_cols=164 Identities=11% Similarity=0.185 Sum_probs=117.7
Q ss_pred EEecCCCeEEEEEccCceeeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCC----ceeeeEecCCccceEEE
Q 047355 75 VCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKN----WECTQTFEGHSHYVMQS 150 (312)
Q Consensus 75 ~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~----~~~~~~~~~~~~~v~~~ 150 (312)
++.+-+..+-+-|++++.. +.+. -.+.|.++.|+..++++..|.+.|.|-..|++.. ..+.+.+ -|...+.++
T Consensus 228 fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtsl 304 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSL 304 (425)
T ss_pred ecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhh
Confidence 4445556677777776532 2332 4567888899988999999999999999998754 2233332 256666666
Q ss_pred EeCCCCCCEEEEEeCCCeEEEEEcCCCcc---eeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEe
Q 047355 151 AFNPKDLNTFASASLDGTIQIWNMDSSAA---KFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQIL 227 (312)
Q Consensus 151 ~~~~~~~~~~~s~s~dg~v~iwd~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~ 227 (312)
..-..+.+.|++.+.+|+|++||++..++ +.+.++|-....-+-+...+.+..++++++|...++|.+..+.++.++
T Consensus 305 q~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~ti 384 (425)
T KOG2695|consen 305 QILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTI 384 (425)
T ss_pred hhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeecc
Confidence 54443457899999999999999998776 777788865544444456677788999999999999999999988877
Q ss_pred cccc----cCeEEEEEeC
Q 047355 228 EGHT----NNVTAVCFHP 241 (312)
Q Consensus 228 ~~h~----~~i~~l~~~~ 241 (312)
+-.. ..+.+++|..
T Consensus 385 pf~~s~~e~d~~sv~~~s 402 (425)
T KOG2695|consen 385 PFPYSASEVDIPSVAFDS 402 (425)
T ss_pred CCCCccccccccceehhc
Confidence 5332 2456666654
No 290
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.91 E-value=1.2e-09 Score=98.65 Aligned_cols=220 Identities=16% Similarity=0.241 Sum_probs=154.2
Q ss_pred ceeeeEEecCCceeEEEEeeCCcEEEEecCCCeEEEEEccCceeeeeecccccceeEEEEecCCCEEEEEeC-CC-cEEE
Q 047355 50 TTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASD-DK-LIKL 127 (312)
Q Consensus 50 ~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~-d~-~v~i 127 (312)
+..++|+.+....++++|+.+.+.|+.|+-.|.|++|++.++.....+..|..+|+-+.-+.+|...++.+. .. ...+
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSAL 1171 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHH
Confidence 455677778888999999999999999999999999999999998899999999999999989988776554 33 4678
Q ss_pred EeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeCCCeEEEEEcCCCcceeee-ccc---ccceeEEEEEEcCCceE
Q 047355 128 WDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTL-DAH---EKGINCIDYFITSDKVY 203 (312)
Q Consensus 128 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~-~~~---~~~v~~~~~~~~~~~~~ 203 (312)
|+........+.|.+. ..+.|+.. ...-+.|+......+||+.++....++ .+- ...-++.. ++|+..+
T Consensus 1172 W~~~s~~~~~Hsf~ed----~~vkFsn~-~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~--FsP~D~L 1244 (1516)
T KOG1832|consen 1172 WDASSTGGPRHSFDED----KAVKFSNS-LQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAH--FSPCDTL 1244 (1516)
T ss_pred hccccccCcccccccc----ceeehhhh-HHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccc--cCCCcce
Confidence 9876554444555432 23445432 233344555567899999998776552 211 11112332 4565555
Q ss_pred EEEEeCCCeEEEEeCCCCeEEEEecccccCeEEEEEeCCCcEEEEEeCCCcEEEEeCCCcceeeecccCccceEEEEEec
Q 047355 204 LITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITASEDGTILIWNATTFRLQNTLSSGLERVWSIGYKK 283 (312)
Q Consensus 204 l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~ 283 (312)
++ .|| .+||.+..+.++.+......+ .=.|+|.|..++-.+ -|||++|+++++...+-... .|.|+.
T Consensus 1245 Il---ndG--vLWDvR~~~aIh~FD~ft~~~-~G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP~Ldqc--~VtFNs 1311 (1516)
T KOG1832|consen 1245 IL---NDG--VLWDVRIPEAIHRFDQFTDYG-GGGFHPSGNEVIINS-----EIWDMRTFKLLHSVPSLDQC--AVTFNS 1311 (1516)
T ss_pred Ee---eCc--eeeeeccHHHHhhhhhheecc-cccccCCCceEEeec-----hhhhhHHHHHHhcCccccce--EEEecc
Confidence 54 344 579998877777666544333 337899999888877 57999999999887654332 566777
Q ss_pred CCCeEE
Q 047355 284 GSNQVA 289 (312)
Q Consensus 284 ~~~~l~ 289 (312)
.|+.+.
T Consensus 1312 tG~VmY 1317 (1516)
T KOG1832|consen 1312 TGDVMY 1317 (1516)
T ss_pred Cccchh
Confidence 766543
No 291
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.91 E-value=3.3e-06 Score=74.28 Aligned_cols=256 Identities=11% Similarity=0.042 Sum_probs=148.2
Q ss_pred CCeEEEEecCCeEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEecCCCeEEEEEccCceeeeeecccccce----
Q 047355 29 QPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYI---- 104 (312)
Q Consensus 29 ~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i---- 104 (312)
+..++.++.+|.+.-+|.++++..-...... .+.+.-.. .+..++.+..++.+..+|.++++.+-.+......+
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~ssP~v-~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~ 197 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAG-EALSRPVV-SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRG 197 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCC-ceecCCEE-ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccC
Confidence 4567778889999999988877665544332 12111111 24567778889999999999887665543221100
Q ss_pred -eEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEecCCc----c---ceEEEEeCCC-CCCEEEEEeCCCeEEEEEcC
Q 047355 105 -RSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHS----H---YVMQSAFNPK-DLNTFASASLDGTIQIWNMD 175 (312)
Q Consensus 105 -~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~----~---~v~~~~~~~~-~~~~~~s~s~dg~v~iwd~~ 175 (312)
.+-.+. +..++.++.++.+...|..+.... ....... . ........|. ..+.++.++.+|.+..+|..
T Consensus 198 ~~sP~v~--~~~v~~~~~~g~v~a~d~~~G~~~-W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~ 274 (394)
T PRK11138 198 ESAPATA--FGGAIVGGDNGRVSAVLMEQGQLI-WQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLR 274 (394)
T ss_pred CCCCEEE--CCEEEEEcCCCEEEEEEccCChhh-heeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECC
Confidence 011111 234666777888888887654321 1111000 0 0000111110 13567777889999999999
Q ss_pred CCcceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEeccccc-CeEEEEEeCCCcEEEEEeCCCc
Q 047355 176 SSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTN-NVTAVCFHPELRIIITASEDGT 254 (312)
Q Consensus 176 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~-~i~~l~~~~~~~~l~s~s~dg~ 254 (312)
+++.+...... ....+. . .+..+..++.+|.+..+|.++++.+-....-.. ...+... .+..++.++.||.
T Consensus 275 tG~~~W~~~~~--~~~~~~--~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~ 346 (394)
T PRK11138 275 SGQIVWKREYG--SVNDFA--V--DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGY 346 (394)
T ss_pred CCCEEEeecCC--CccCcE--E--ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCE
Confidence 88766544321 111111 1 234566677899999999998876543221111 1122222 2456788999999
Q ss_pred EEEEeCCCcceeeecccCccceEE-EEEecCCCeEEEEecCCeEEE
Q 047355 255 ILIWNATTFRLQNTLSSGLERVWS-IGYKKGSNQVAFGCDNGTLIV 299 (312)
Q Consensus 255 v~iwd~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~~g~i~v 299 (312)
|.+.|..+++.+.+..-....+.+ ..+ .++.|..++.+|.++.
T Consensus 347 l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~ 390 (394)
T PRK11138 347 LHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYA 390 (394)
T ss_pred EEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEE
Confidence 999999999887665433222322 122 3568888899998764
No 292
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=1.9e-08 Score=84.53 Aligned_cols=235 Identities=18% Similarity=0.113 Sum_probs=158.1
Q ss_pred cCCceeEEEEeeCCcEEEEecCCCeEEEEEccC---ceeeeeecccccceeEEEEecCCCEEEEEeC-CCcEEEEeCCCC
Q 047355 58 TDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNT---MASVKEFEAHEDYIRSLAVHPTFPFVLTASD-DKLIKLWDWEKN 133 (312)
Q Consensus 58 ~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~---~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~-d~~v~iwd~~~~ 133 (312)
|...|+.+ +....+++++|+.||.++.|--.. .+.++.+..|...|.+++.+-++.++.|.+. |..+|++|+...
T Consensus 8 hrd~i~hv-~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 8 HRDVITHV-FPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred ccceeeeE-eeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 33344444 445578999999999999996443 3456677889999999999999999999888 999999998653
Q ss_pred cee-eeEecCCccceEEEEeCCCCCC--EEEEEeCCCeEEEEEcCCCc--ceeeecccccceeEEEEEEcCCceEEEEEe
Q 047355 134 WEC-TQTFEGHSHYVMQSAFNPKDLN--TFASASLDGTIQIWNMDSSA--AKFTLDAHEKGINCIDYFITSDKVYLITGS 208 (312)
Q Consensus 134 ~~~-~~~~~~~~~~v~~~~~~~~~~~--~~~s~s~dg~v~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~ 208 (312)
... ...+.--... ......|.+.. ..++...++.+.++|-.... ......-|..+|.++.+... +..+++..
T Consensus 87 DminmiKL~~lPg~-a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa--~Ds~vSiD 163 (558)
T KOG0882|consen 87 DMINMIKLVDLPGF-AEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQA--GDSAVSID 163 (558)
T ss_pred chhhhcccccCCCc-eEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeecc--ccceeecc
Confidence 221 1111111111 12223333222 22334467899999976543 34455678899999887544 44578888
Q ss_pred CCCeEEEEeCCC-Ce-----EEEEec---------ccccCeEEEEEeCCCcEEEEEeCCCcEEEEeCCCcceeeecccCc
Q 047355 209 DDFTVKVWDYET-KT-----CVQILE---------GHTNNVTAVCFHPELRIIITASEDGTILIWNATTFRLQNTLSSGL 273 (312)
Q Consensus 209 ~dg~i~vwd~~~-~~-----~~~~~~---------~h~~~i~~l~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~ 273 (312)
..|.|.-|..+. .+ ....++ .-....+++.|+|++..+++-+.|..||+++..++++.+.+.+..
T Consensus 164 ~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~ 243 (558)
T KOG0882|consen 164 ISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVL 243 (558)
T ss_pred ccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccc
Confidence 889999998762 11 111111 123457899999999999999999999999999987766554332
Q ss_pred c---------------------------------ceEEEEEecCCCeEEEEecCCe
Q 047355 274 E---------------------------------RVWSIGYKKGSNQVAFGCDNGT 296 (312)
Q Consensus 274 ~---------------------------------~v~~~~~~~~~~~l~~~~~~g~ 296 (312)
. .-....|...|+.|+.|+-=|.
T Consensus 244 t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~gi 299 (558)
T KOG0882|consen 244 TDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILGI 299 (558)
T ss_pred hhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecceeE
Confidence 1 1234447777888888776554
No 293
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.90 E-value=8.7e-09 Score=83.81 Aligned_cols=161 Identities=17% Similarity=0.228 Sum_probs=114.0
Q ss_pred EEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeCCCeEEEEEcCCC----cceeeecccccceeE
Q 047355 117 LTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSS----AAKFTLDAHEKGINC 192 (312)
Q Consensus 117 ~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~----~~~~~~~~~~~~v~~ 192 (312)
++.+.+-.+-+-|+.++.. +.|. ....|..+.|... .+++..|..+|.|..+|++.. .-....--|...+++
T Consensus 228 fs~G~sqqv~L~nvetg~~--qsf~-sksDVfAlQf~~s-~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvts 303 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ--QSFQ-SKSDVFALQFAGS-DNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTS 303 (425)
T ss_pred ecccccceeEEEEeecccc--cccc-cchhHHHHHhccc-CCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhh
Confidence 4455566676767665422 2333 4456667777753 479999999999999999865 222233457778888
Q ss_pred EEEEEcCCceEEEEEeCCCeEEEEeCCCCeE---EEEecccccCeEEE--EEeCCCcEEEEEeCCCcEEEEeCCCcceee
Q 047355 193 IDYFITSDKVYLITGSDDFTVKVWDYETKTC---VQILEGHTNNVTAV--CFHPELRIIITASEDGTILIWNATTFRLQN 267 (312)
Q Consensus 193 ~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~---~~~~~~h~~~i~~l--~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~ 267 (312)
+... ..++.+|++.+.+|+|++||.+.-++ +..+.+|...-.-+ -.++....+++++.|...|||.+..+.+..
T Consensus 304 lq~L-q~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~ 382 (425)
T KOG2695|consen 304 LQIL-QFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLC 382 (425)
T ss_pred hhhh-ccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceee
Confidence 7753 32467788888999999999987666 88889997643333 335677889999999999999999988877
Q ss_pred ecccCcc----ceEEEEEe
Q 047355 268 TLSSGLE----RVWSIGYK 282 (312)
Q Consensus 268 ~~~~~~~----~v~~~~~~ 282 (312)
++..... .+++++|.
T Consensus 383 tipf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 383 TIPFPYSASEVDIPSVAFD 401 (425)
T ss_pred ccCCCCccccccccceehh
Confidence 7665432 45666664
No 294
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.89 E-value=4.8e-08 Score=81.00 Aligned_cols=159 Identities=16% Similarity=0.199 Sum_probs=104.8
Q ss_pred eEEEEeeCCcEEEEecCCCeEEEEEccCcee----eeeecccccceeEEEEecCCCEEEEE---eCCCcEEEEeCCCCce
Q 047355 63 RTAKFVAREHWIVCGSDDKFIRVFDYNTMAS----VKEFEAHEDYIRSLAVHPTFPFVLTA---SDDKLIKLWDWEKNWE 135 (312)
Q Consensus 63 ~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~----~~~~~~h~~~i~~~~~~~~~~~l~t~---s~d~~v~iwd~~~~~~ 135 (312)
....+++.+++++.+..+....++++..... ...... ...-+++.+-.+...+..+ ++...+.+|.... .
T Consensus 66 ~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~--~ 142 (390)
T KOG3914|consen 66 ALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-PKRPTAISFIREDTSVLVADKAGDVYSFDILSADS--G 142 (390)
T ss_pred cccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeec-ccCcceeeeeeccceEEEEeecCCceeeeeecccc--c
Confidence 3445567788888888888877777654322 222211 1122334443444444333 4444455554332 2
Q ss_pred eeeEecCCccceEEEEeCCCCCCEEEEEeCCCeEEEEEcCCCcceee-ecccccceeEEEEEEcCCceEEEEEeCCCeEE
Q 047355 136 CTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFT-LDAHEKGINCIDYFITSDKVYLITGSDDFTVK 214 (312)
Q Consensus 136 ~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~ 214 (312)
......+|-..+..++++|+ ..+++++-.|..||+-.......+.. .-+|+.-|..++.. ++..|++||.|++|+
T Consensus 143 ~~~~~lGhvSml~dVavS~D-~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~---~~~~LlS~sGD~tlr 218 (390)
T KOG3914|consen 143 RCEPILGHVSMLLDVAVSPD-DQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLT---DNYLLLSGSGDKTLR 218 (390)
T ss_pred CcchhhhhhhhhheeeecCC-CCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeec---cCceeeecCCCCcEE
Confidence 33456789999999999985 58999999999999987765544433 34788888887742 445689999999999
Q ss_pred EEeCCCCeEEEEec
Q 047355 215 VWDYETKTCVQILE 228 (312)
Q Consensus 215 vwd~~~~~~~~~~~ 228 (312)
+||+++++.+.++.
T Consensus 219 ~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 219 LWDITSGKLLDTCD 232 (390)
T ss_pred EEecccCCcccccc
Confidence 99999998876554
No 295
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.88 E-value=6.1e-06 Score=71.63 Aligned_cols=274 Identities=9% Similarity=0.087 Sum_probs=160.2
Q ss_pred cCcEEEEEEcCCCCeEEEEecCCeEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEE-------ecC---CCeEEEE
Q 047355 17 SDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVC-------GSD---DKFIRVF 86 (312)
Q Consensus 17 ~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-------g~~---dg~i~iw 86 (312)
+...+..+++++|+. ++.+.++.++|++......+.+... ..+..+.|+|.+.+|.+ +.. .-.+.+|
T Consensus 34 ~~~~~v~~~S~~G~l-fA~~~~~~v~i~~~~~~~~~lt~~~--~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~ 110 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRL-FAYSDNQVVKVFEIATLKVVLCVEL--KKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVY 110 (566)
T ss_pred CCcceeEEEcCCCcE-EEEEcCCeEEEEEccCCcEEEEecc--ceeeeeeecccccccccccccccccCCCCCCCceeee
Confidence 344677788888865 5566778899999877653333322 26888999998887754 111 2357799
Q ss_pred EccCceeeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCC-CCCEEEE---
Q 047355 87 DYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPK-DLNTFAS--- 162 (312)
Q Consensus 87 d~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~s--- 162 (312)
++++......+......-.+..|+.+..+.+-- -.+.+++|+..........+ |...+....++|. ....+++
T Consensus 111 ~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arl-v~nev~f~~~~~f~~~~~kl--~~~~i~~f~lSpgp~~~~vAvyvP 187 (566)
T KOG2315|consen 111 NVETGVQRSQIQKKMQNGWVPQFSIDESLAARL-VSNEVQFYDLGSFKTIQHKL--SVSGITMLSLSPGPEPPFVAVYVP 187 (566)
T ss_pred eeccceehhheehhhhcCcccccccchhhhhhh-hcceEEEEecCCccceeeee--eccceeeEEecCCCCCceEEEEcc
Confidence 998854443443333222577888887654422 24679999976533333333 4455667777876 3334443
Q ss_pred --EeCCCeEEEEEcCCCcceeeecc---cccceeEEEEEEcCCceEEEEEe----------CCCeEEEEeCCCCeEEEEe
Q 047355 163 --ASLDGTIQIWNMDSSAAKFTLDA---HEKGINCIDYFITSDKVYLITGS----------DDFTVKVWDYETKTCVQIL 227 (312)
Q Consensus 163 --~s~dg~v~iwd~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~l~sg~----------~dg~i~vwd~~~~~~~~~~ 227 (312)
.+.-+.|+||..........+.. ....-..+.|-.-..+.++++.+ ...++++.++....+...+
T Consensus 188 e~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L 267 (566)
T KOG2315|consen 188 EKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPL 267 (566)
T ss_pred CCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEec
Confidence 23445799998763221111000 00000111111111122222211 2346888888755555444
Q ss_pred cccccCeEEEEEeCCCcEEEEEeC--CCcEEEEeCCCcceeeecccCccceEEEEEecCCCeEEEEec---CCeEEEE
Q 047355 228 EGHTNNVTAVCFHPELRIIITASE--DGTILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGCD---NGTLIVK 300 (312)
Q Consensus 228 ~~h~~~i~~l~~~~~~~~l~s~s~--dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---~g~i~v~ 300 (312)
. ..++|+++.|+|+++.++.+=. =-.+.|||++ ++++..+... .-.++-|+|.|+.|+.++= .|.+-||
T Consensus 268 ~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~eg--pRN~~~fnp~g~ii~lAGFGNL~G~mEvw 341 (566)
T KOG2315|consen 268 L-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFPEG--PRNTAFFNPHGNIILLAGFGNLPGDMEVW 341 (566)
T ss_pred C-CCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCCCC--CccceEECCCCCEEEEeecCCCCCceEEE
Confidence 4 4789999999999987765532 3468899975 5666655533 3457889999999886554 3444444
No 296
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.88 E-value=3.9e-06 Score=80.57 Aligned_cols=262 Identities=12% Similarity=0.183 Sum_probs=160.6
Q ss_pred ccCcEEEEEEcCCCCeEEEEec---C---CeEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEecC---CCeEEEE
Q 047355 16 KSDRVKSVDFHPTQPWVLASLY---S---GTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSD---DKFIRVF 86 (312)
Q Consensus 16 ~~~~i~~~~~~~~~~~l~~~~~---d---g~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~---dg~i~iw 86 (312)
.++.-..|+|..||.++|+... . ..+|||+-+ +....+.....+--..++|.|.|.+|++.-. ...|.+|
T Consensus 208 ~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFf 286 (928)
T PF04762_consen 208 WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFF 286 (928)
T ss_pred cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEE
Confidence 5567788999999999998764 3 479999865 4443333333444556789999999987654 3566666
Q ss_pred EccCce---eeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCce-eeeEecC-CccceEEEEeCCCCCCEEE
Q 047355 87 DYNTMA---SVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWE-CTQTFEG-HSHYVMQSAFNPKDLNTFA 161 (312)
Q Consensus 87 d~~~~~---~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~-~~~~~~~-~~~~v~~~~~~~~~~~~~~ 161 (312)
.-+... ..-.+......|..+.|++++..|+..-.|. |++|-..+... ..+.+.- ....+..+.|+|.+...|.
T Consensus 287 ErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~ 365 (928)
T PF04762_consen 287 ERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLH 365 (928)
T ss_pred ecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEE
Confidence 544322 1111224456799999999999998866554 99998765432 2222221 1222344889998888888
Q ss_pred EEeCCCeEEEEEcCCCcceeeecccccceeEEEEEEcC-CceEEEEEeCCCeEEEEeCCCCe-----EEEEecccccCeE
Q 047355 162 SASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITS-DKVYLITGSDDFTVKVWDYETKT-----CVQILEGHTNNVT 235 (312)
Q Consensus 162 s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~sg~~dg~i~vwd~~~~~-----~~~~~~~h~~~i~ 235 (312)
..+.+|.+..+++.-.... . .. ..+ |...++.- +..++++-.++... +...+. -.++|.
T Consensus 366 v~t~~g~~~~~~~~~~v~~----s--~~-------~~~~D~g~vaVI-DG~~lllTpf~~a~VPPPMs~~~l~-~~~~v~ 430 (928)
T PF04762_consen 366 VLTSNGQYEIYDFAWDVSR----S--PG-------SSPNDNGTVAVI-DGNKLLLTPFRRAVVPPPMSSYELE-LPSPVN 430 (928)
T ss_pred EEecCCcEEEEEEEEEEEe----c--CC-------CCccCceEEEEE-eCCeEEEecccccCCCchHhceEEc-CCCCcE
Confidence 8888888877765311000 0 00 001 11111111 12245665554321 122333 356899
Q ss_pred EEEEeCCCcEEEEEeCCCcEEEEeCCCcce--------eeec----------ccCccceEEEEEecCCCeEEEEecC
Q 047355 236 AVCFHPELRIIITASEDGTILIWNATTFRL--------QNTL----------SSGLERVWSIGYKKGSNQVAFGCDN 294 (312)
Q Consensus 236 ~l~~~~~~~~l~s~s~dg~v~iwd~~~~~~--------~~~~----------~~~~~~v~~~~~~~~~~~l~~~~~~ 294 (312)
.++|++++..+|+-..||.|.+|....... ...+ ......+..+.|-.+...++....+
T Consensus 431 ~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (928)
T PF04762_consen 431 DVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSD 507 (928)
T ss_pred EEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecC
Confidence 999999988899999999999998543211 1111 1123457788888777776666654
No 297
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.87 E-value=6.4e-06 Score=72.61 Aligned_cols=210 Identities=13% Similarity=0.070 Sum_probs=120.2
Q ss_pred eEEEEeccCCceeeeEEecCCceeEEEEeeCCcE-EEEecC---CCeEEEEEccCceeeeeecccccceeEEEEecCCCE
Q 047355 40 TVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHW-IVCGSD---DKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPF 115 (312)
Q Consensus 40 ~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~g~~---dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~ 115 (312)
.|.+-|.+... .+.+.... ......|+|+++. ++..+. +..|.++|+.+++..... ...+......|+|+++.
T Consensus 170 ~l~~~d~dg~~-~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~SPDG~~ 246 (419)
T PRK04043 170 NIVLADYTLTY-QKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVSKDGSK 246 (419)
T ss_pred eEEEECCCCCc-eeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe-cCCCcEEeeEECCCCCE
Confidence 44444554443 23232233 6778899999985 554333 357888899887654333 23444566789999987
Q ss_pred EE-EEeCCC--cEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeCCC--eEEEEEcCCCcceeeecccccce
Q 047355 116 VL-TASDDK--LIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDG--TIQIWNMDSSAAKFTLDAHEKGI 190 (312)
Q Consensus 116 l~-t~s~d~--~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg--~v~iwd~~~~~~~~~~~~~~~~v 190 (312)
++ +.+.++ .+.++|+.... ...+..+........|+|.+..++++....+ .|.++|+.+++........ .
T Consensus 247 la~~~~~~g~~~Iy~~dl~~g~--~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g-~-- 321 (419)
T PRK04043 247 LLLTMAPKGQPDIYLYDTNTKT--LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHG-K-- 321 (419)
T ss_pred EEEEEccCCCcEEEEEECCCCc--EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCC-C--
Confidence 65 444444 56666765442 2223333322334578986544444443444 5777788776553322111 1
Q ss_pred eEEEEEEcCCceEEEEEeCC---------CeEEEEeCCCCeEEEEecccccCeEEEEEeCCCcEEEEEeCC-Cc--EEEE
Q 047355 191 NCIDYFITSDKVYLITGSDD---------FTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITASED-GT--ILIW 258 (312)
Q Consensus 191 ~~~~~~~~~~~~~l~sg~~d---------g~i~vwd~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~s~d-g~--v~iw 258 (312)
... .++|+|.+++..+.. ..|.+.|+.++.... +.... ......|+|||+.++..+.+ +. +.+.
T Consensus 322 ~~~--~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~~-~~~~p~~SPDG~~I~f~~~~~~~~~L~~~ 397 (419)
T PRK04043 322 NNS--SVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-LTANG-VNQFPRFSSDGGSIMFIKYLGNQSALGII 397 (419)
T ss_pred cCc--eECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-CCCCC-CcCCeEECCCCCEEEEEEccCCcEEEEEE
Confidence 112 357888887765543 368888988776543 33222 23358899999987766543 22 5555
Q ss_pred eCC
Q 047355 259 NAT 261 (312)
Q Consensus 259 d~~ 261 (312)
++.
T Consensus 398 ~l~ 400 (419)
T PRK04043 398 RLN 400 (419)
T ss_pred ecC
Confidence 654
No 298
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.87 E-value=3.4e-06 Score=74.31 Aligned_cols=202 Identities=7% Similarity=-0.039 Sum_probs=119.4
Q ss_pred CeEEEEEccCceeeeeecccccceeEEEEecCCCE-EEEEeCC---CcEEEEeCCCCceeeeEecCCccceEEEEeCCCC
Q 047355 81 KFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPF-VLTASDD---KLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKD 156 (312)
Q Consensus 81 g~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~-l~t~s~d---~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 156 (312)
..|.+-|.+... .+.+.... .+..-.|+|+++. ++..+.+ ..|.++|+.++... .+...........|+|.+
T Consensus 169 ~~l~~~d~dg~~-~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~--~lt~~~g~~~~~~~SPDG 244 (419)
T PRK04043 169 SNIVLADYTLTY-QKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKE--KIASSQGMLVVSDVSKDG 244 (419)
T ss_pred ceEEEECCCCCc-eeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEE--EEecCCCcEEeeEECCCC
Confidence 455555655443 23333333 6778899999984 5544443 45777787654322 222233344556799966
Q ss_pred CCEEEEEeCC--CeEEEEEcCCCcceeeecccccceeEEEEEEcCCceEEEEEeC-CC--eEEEEeCCCCeEEEEecccc
Q 047355 157 LNTFASASLD--GTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSD-DF--TVKVWDYETKTCVQILEGHT 231 (312)
Q Consensus 157 ~~~~~s~s~d--g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~-dg--~i~vwd~~~~~~~~~~~~h~ 231 (312)
..++++.+.+ ..|.++|+.++... .+..+....... .++|||..|+-.+. .+ .|.+.|+.+++..+.... .
T Consensus 245 ~~la~~~~~~g~~~Iy~~dl~~g~~~-~LT~~~~~d~~p--~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g 320 (419)
T PRK04043 245 SKLLLTMAPKGQPDIYLYDTNTKTLT-QITNYPGIDVNG--NFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-G 320 (419)
T ss_pred CEEEEEEccCCCcEEEEEECCCCcEE-EcccCCCccCcc--EECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-C
Confidence 5555555545 46777788776543 333332211222 35788866655443 23 688888887776444332 1
Q ss_pred cCeEEEEEeCCCcEEEEEeCC---------CcEEEEeCCCcceeeecccCccceEEEEEecCCCeEEEEecC
Q 047355 232 NNVTAVCFHPELRIIITASED---------GTILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGCDN 294 (312)
Q Consensus 232 ~~i~~l~~~~~~~~l~s~s~d---------g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~ 294 (312)
. ....|+|+++.|+..+.. ..|.+.|+.+++... +... .......|+|||+.|++....
T Consensus 321 ~--~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~-~~~~~p~~SPDG~~I~f~~~~ 388 (419)
T PRK04043 321 K--NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-LTAN-GVNQFPRFSSDGGSIMFIKYL 388 (419)
T ss_pred C--cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-CCCC-CCcCCeEECCCCCEEEEEEcc
Confidence 1 134899999988766653 257788887766533 3222 122357899999999987764
No 299
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.86 E-value=1.9e-06 Score=74.67 Aligned_cols=263 Identities=12% Similarity=0.139 Sum_probs=155.6
Q ss_pred EEEEEcCCCCeEEEEecCCeEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEecC-----------CCeEEEEEcc
Q 047355 21 KSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSD-----------DKFIRVFDYN 89 (312)
Q Consensus 21 ~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~-----------dg~i~iwd~~ 89 (312)
+-+.|||.|.+|++--.- .|.+|--.+-..++.|. ...+.-+.|+|..++|++=+. ...++|||+.
T Consensus 214 tyv~wSP~GTYL~t~Hk~-GI~lWGG~~f~r~~RF~--Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~ 290 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQ-GIALWGGESFDRIQRFY--HPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIA 290 (698)
T ss_pred eeEEecCCceEEEEEecc-ceeeecCccHHHHHhcc--CCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEcc
Confidence 568899999999976554 46889766544444443 346888999999999988552 2579999999
Q ss_pred Cceeeeeeccc--cccee-EEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeCC
Q 047355 90 TMASVKEFEAH--EDYIR-SLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLD 166 (312)
Q Consensus 90 ~~~~~~~~~~h--~~~i~-~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d 166 (312)
++...+.+... ...+. -..|+.+++++|--.. ..|.||+... ..+...-.-.-..|....|+|.+ +++|-=+..
T Consensus 291 tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtps-f~lld~Kslki~gIr~FswsP~~-~llAYwtpe 367 (698)
T KOG2314|consen 291 TGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPS-FMLLDKKSLKISGIRDFSWSPTS-NLLAYWTPE 367 (698)
T ss_pred ccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCc-eeeecccccCCccccCcccCCCc-ceEEEEccc
Confidence 99877766542 22232 3578999999885554 5788998543 12111111122345566778753 444432111
Q ss_pred -----CeEEEEEcCCCcceeeecccccceeEEEEEEcCCceEEEE----------EeCCCeEEEEeCCCCeE-EEEeccc
Q 047355 167 -----GTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLIT----------GSDDFTVKVWDYETKTC-VQILEGH 230 (312)
Q Consensus 167 -----g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s----------g~~dg~i~vwd~~~~~~-~~~~~~h 230 (312)
.++.+..+.+.+.+.+...+. |..+....-.+|.+|+. .+.-.++.++.++.... +..+. -
T Consensus 368 ~~~~parvtL~evPs~~~iRt~nlfn--VsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~ve-l 444 (698)
T KOG2314|consen 368 TNNIPARVTLMEVPSKREIRTKNLFN--VSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVE-L 444 (698)
T ss_pred ccCCcceEEEEecCccceeeecccee--eeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeee-c
Confidence 134444444444333322221 11111222334444442 12222455666554332 22222 4
Q ss_pred ccCeEEEEEeCCCcEEEEEeCC---CcEEEEeCCC----cceeeecccCccceEEEEEecCCCeEEEEecC
Q 047355 231 TNNVTAVCFHPELRIIITASED---GTILIWNATT----FRLQNTLSSGLERVWSIGYKKGSNQVAFGCDN 294 (312)
Q Consensus 231 ~~~i~~l~~~~~~~~l~s~s~d---g~v~iwd~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~ 294 (312)
...|-..+|-|.|..+++-+.. .++.+|.+.+ .+++.++.. .....+-|+|.|..++.+..-
T Consensus 445 ke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~vfwsPkG~fvvva~l~ 513 (698)
T KOG2314|consen 445 KESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK--KFANTVFWSPKGRFVVVAALV 513 (698)
T ss_pred chheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc--cccceEEEcCCCcEEEEEEec
Confidence 5678899999999887766543 5788887763 233444433 446789999999999877653
No 300
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.85 E-value=2.5e-05 Score=64.35 Aligned_cols=247 Identities=16% Similarity=0.201 Sum_probs=140.6
Q ss_pred cCcEEEEEEcCCC-CeEEEEecCCe-EEEEeccCCceeeeEEecCCc--eeEEEEeeCCcEEEEecC-----CCeEEEEE
Q 047355 17 SDRVKSVDFHPTQ-PWVLASLYSGT-VCIWNYHSQTTEKSVKVTDSP--VRTAKFVAREHWIVCGSD-----DKFIRVFD 87 (312)
Q Consensus 17 ~~~i~~~~~~~~~-~~l~~~~~dg~-v~iw~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~g~~-----dg~i~iwd 87 (312)
.++-..++.+|+. ..++.+-.-|+ ..+||..+++....+....+. .-...|++++++|++.=+ .|.|-+||
T Consensus 4 P~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd 83 (305)
T PF07433_consen 4 PARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYD 83 (305)
T ss_pred CccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEE
Confidence 3566788999955 45556666665 678999888877666543332 234689999999998643 48999999
Q ss_pred cc-CceeeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeCC
Q 047355 88 YN-TMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLD 166 (312)
Q Consensus 88 ~~-~~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~d 166 (312)
.. +...+.++..|.-.-..+.+.|+++.|+.+. |-|. +.... +...+--.+.+
T Consensus 84 ~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVAN--GGI~-----Thpd~-------------------GR~kLNl~tM~ 137 (305)
T PF07433_consen 84 AARGYRRIGEFPSHGIGPHELLLMPDGETLVVAN--GGIE-----THPDS-------------------GRAKLNLDTMQ 137 (305)
T ss_pred CcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEc--CCCc-----cCccc-------------------CceecChhhcC
Confidence 98 6677888887766666788999997777663 2221 10000 00000001112
Q ss_pred CeEEEEEcCCCcceee--e--cccccceeEEEEEEcCCceEEEEEeCCCe-------EEEEeCCCCeEEEEec-------
Q 047355 167 GTIQIWNMDSSAAKFT--L--DAHEKGINCIDYFITSDKVYLITGSDDFT-------VKVWDYETKTCVQILE------- 228 (312)
Q Consensus 167 g~v~iwd~~~~~~~~~--~--~~~~~~v~~~~~~~~~~~~~l~sg~~dg~-------i~vwd~~~~~~~~~~~------- 228 (312)
.++...|..+++.+.+ + .-|+..+.-+++ .++|..++..-..|. |-+++- ++.+..+.
T Consensus 138 psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~--~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~ 213 (305)
T PF07433_consen 138 PSLVYLDARSGALLEQVELPPDLHQLSIRHLAV--DGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWR 213 (305)
T ss_pred CceEEEecCCCceeeeeecCccccccceeeEEe--cCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHH
Confidence 2223333333333222 2 124444554442 344443333222221 223322 22122221
Q ss_pred ccccCeEEEEEeCCCcEEE-EEeCCCcEEEEeCCCcceeeecccCccceEEEEEecCCCeEEEEecCCeE
Q 047355 229 GHTNNVTAVCFHPELRIII-TASEDGTILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGCDNGTL 297 (312)
Q Consensus 229 ~h~~~i~~l~~~~~~~~l~-s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i 297 (312)
.-...|-+|++++++.+++ |+-..+.+.+||..+++++.... ...+-.++-.+++ ++..+..|.+
T Consensus 214 ~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~--l~D~cGva~~~~~--f~~ssG~G~~ 279 (305)
T PF07433_consen 214 RLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP--LPDACGVAPTDDG--FLVSSGQGQL 279 (305)
T ss_pred hhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc--cCceeeeeecCCc--eEEeCCCccE
Confidence 2346799999999998765 55567799999999998876544 3344455544444 4444444443
No 301
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.84 E-value=3.5e-05 Score=63.68 Aligned_cols=266 Identities=11% Similarity=0.131 Sum_probs=158.3
Q ss_pred CCeEEEEeccCCce-e--eeEEecCCceeEEEEeeCCcEEEEecC---CCeEEEEEccC--cee--eeeecccccceeEE
Q 047355 38 SGTVCIWNYHSQTT-E--KSVKVTDSPVRTAKFVAREHWIVCGSD---DKFIRVFDYNT--MAS--VKEFEAHEDYIRSL 107 (312)
Q Consensus 38 dg~v~iw~~~~~~~-~--~~~~~~~~~v~~~~~~~~~~~l~~g~~---dg~i~iwd~~~--~~~--~~~~~~h~~~i~~~ 107 (312)
++-|.+|++++.+- . .......+..+-++++++.+.|+++-. +|.|..|.++. +.. +........+-.-+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 56799999873321 1 112234456678899999999998764 47788888765 222 22222222333778
Q ss_pred EEecCCCEEEEEeC-CCcEEEEeCCCCcee--eeEecCCccc----------eEEEEeCCCCCCEEEEEeC-CCeEEEEE
Q 047355 108 AVHPTFPFVLTASD-DKLIKLWDWEKNWEC--TQTFEGHSHY----------VMQSAFNPKDLNTFASASL-DGTIQIWN 173 (312)
Q Consensus 108 ~~~~~~~~l~t~s~-d~~v~iwd~~~~~~~--~~~~~~~~~~----------v~~~~~~~~~~~~~~s~s~-dg~v~iwd 173 (312)
++++++++++++.. -|.|.++-++..... ......|... +-...+.|. .++++++.. --.|.+|+
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~-~~~l~v~DLG~Dri~~y~ 173 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPD-GRYLVVPDLGTDRIFLYD 173 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCC-CCEEEEeecCCceEEEEE
Confidence 99999999988765 578999887543211 1011112221 344567774 466666643 33689999
Q ss_pred cCCCcceeeec---ccccceeEEEEEEcCCceEEEE-EeCCCeEEEEeCCC--CeE--EEEecc----c--ccCeEEEEE
Q 047355 174 MDSSAAKFTLD---AHEKGINCIDYFITSDKVYLIT-GSDDFTVKVWDYET--KTC--VQILEG----H--TNNVTAVCF 239 (312)
Q Consensus 174 ~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~l~s-g~~dg~i~vwd~~~--~~~--~~~~~~----h--~~~i~~l~~ 239 (312)
+..+.....-+ ....+..-+. +.|++++... .--+++|.+|.... ++. ++.+.. . ....-+|..
T Consensus 174 ~~dg~L~~~~~~~v~~G~GPRHi~--FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhi 251 (346)
T COG2706 174 LDDGKLTPADPAEVKPGAGPRHIV--FHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHI 251 (346)
T ss_pred cccCccccccccccCCCCCcceEE--EcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEE
Confidence 98554332211 2223345554 4677766554 44688999998765 322 222211 1 234668889
Q ss_pred eCCCcEEEEEeC-CCcEEEEeCCC--cce--eeecccCccceEEEEEecCCCeEEEEecCCe--EEEEeccCCC
Q 047355 240 HPELRIIITASE-DGTILIWNATT--FRL--QNTLSSGLERVWSIGYKKGSNQVAFGCDNGT--LIVKIGNSSG 306 (312)
Q Consensus 240 ~~~~~~l~s~s~-dg~v~iwd~~~--~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~--i~v~~~~~~~ 306 (312)
+|+|++|.+.-. ...|.+|.+.. +++ ......+........|++.+++|+++..++- ..+++....+
T Consensus 252 s~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG 325 (346)
T COG2706 252 SPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETG 325 (346)
T ss_pred CCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCc
Confidence 999998766543 34677776543 333 2222223333778899999999999988653 4445544444
No 302
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.84 E-value=1.4e-08 Score=57.37 Aligned_cols=38 Identities=34% Similarity=0.621 Sum_probs=36.0
Q ss_pred eeeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEe
Q 047355 92 ASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWD 129 (312)
Q Consensus 92 ~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd 129 (312)
++++.+++|+++|++++++|++.++++++.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 56788999999999999999999999999999999997
No 303
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.83 E-value=1.3e-07 Score=86.16 Aligned_cols=183 Identities=16% Similarity=0.220 Sum_probs=129.7
Q ss_pred CCCeEEEEecCCeEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEecCCCeEEEEEccCceeeeeecccccceeEE
Q 047355 28 TQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSL 107 (312)
Q Consensus 28 ~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~ 107 (312)
++..++-|+-...+..+|+.+.+..+......+.+.-+ ..+++.+++|...|+|.+-|..+.+.++++..|++.|.++
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~im--R~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf 223 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIM--RYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF 223 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEE--EecCcEEEeecccceEEeecCCcCceeeeeeccccceeee
Confidence 44567777777778888888777666665555555443 3457889999999999999999999999999999999887
Q ss_pred EEecCCCEEEEEeC---------CCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeCCCeEEEEE---cC
Q 047355 108 AVHPTFPFVLTASD---------DKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWN---MD 175 (312)
Q Consensus 108 ~~~~~~~~l~t~s~---------d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd---~~ 175 (312)
..+ |+.|+++|. |.-|++||++.. ..+.-+.-+..+ .-+.|.|.-...+++++..|...+-| +.
T Consensus 224 Dv~--GNlLitCG~S~R~~~l~~D~FvkVYDLRmm-ral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~ls 299 (1118)
T KOG1275|consen 224 DVQ--GNLLITCGYSMRRYNLAMDPFVKVYDLRMM-RALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLS 299 (1118)
T ss_pred ecc--CCeEEEeecccccccccccchhhhhhhhhh-hccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccC
Confidence 764 778888873 556788998643 111111112222 33568887778899999999999999 33
Q ss_pred CCcceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEe
Q 047355 176 SSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWD 217 (312)
Q Consensus 176 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd 217 (312)
+.. ......+..+-.+..+.+++++..++-|..+|.|.+|-
T Consensus 300 NP~-~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 300 NPP-AGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred CCc-cceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 321 22222222222344555788899999999999999996
No 304
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.82 E-value=6.7e-06 Score=72.35 Aligned_cols=262 Identities=11% Similarity=0.004 Sum_probs=143.2
Q ss_pred CCCeEEEEecCCeEEEEeccCCceeeeEEecCC---------ceeEEEEeeCCcEEEEecCCCeEEEEEccCceeeeeec
Q 047355 28 TQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDS---------PVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFE 98 (312)
Q Consensus 28 ~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~ 98 (312)
.+..+++++.+|.+.-+|..+++.+-....... ......-.-.+..++.++.+|.+..+|.++++..-+.+
T Consensus 68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~ 147 (394)
T PRK11138 68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTK 147 (394)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCccccc
Confidence 356788888889999999887776544432220 00000011235678888899999999999887655544
Q ss_pred ccccceeE-EEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEecCCccce-EEEEeCCC-CCCEEEEEeCCCeEEEEEcC
Q 047355 99 AHEDYIRS-LAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYV-MQSAFNPK-DLNTFASASLDGTIQIWNMD 175 (312)
Q Consensus 99 ~h~~~i~~-~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v-~~~~~~~~-~~~~~~s~s~dg~v~iwd~~ 175 (312)
... .+.+ -.+. +..++.+..++.+.-+|..++.. ...+....... ......|. ....++.++.+|.+..+|..
T Consensus 148 ~~~-~~~ssP~v~--~~~v~v~~~~g~l~ald~~tG~~-~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~ 223 (394)
T PRK11138 148 VAG-EALSRPVVS--DGLVLVHTSNGMLQALNESDGAV-KWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLME 223 (394)
T ss_pred CCC-ceecCCEEE--CCEEEEECCCCEEEEEEccCCCE-eeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEcc
Confidence 332 2222 1121 34566677788899999876633 22222111000 00000110 12356777889999999998
Q ss_pred CCcceeeeccccc----c---eeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEecccccCeEEEEEeCCCcEEEE
Q 047355 176 SSAAKFTLDAHEK----G---INCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIIT 248 (312)
Q Consensus 176 ~~~~~~~~~~~~~----~---v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s 248 (312)
+++.......... . ...+...+.-.+..+..++.+|.+..+|..+++.+-.... +....+.. .+..++.
T Consensus 224 ~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~--~~~~~~~~--~~~~vy~ 299 (394)
T PRK11138 224 QGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY--GSVNDFAV--DGGRIYL 299 (394)
T ss_pred CChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC--CCccCcEE--ECCEEEE
Confidence 8776544321100 0 0000000000123455667889999999999876644321 11112222 3456777
Q ss_pred EeCCCcEEEEeCCCcceeeecccCccc-eEEEEEecCCCeEEEEecCCeEEE
Q 047355 249 ASEDGTILIWNATTFRLQNTLSSGLER-VWSIGYKKGSNQVAFGCDNGTLIV 299 (312)
Q Consensus 249 ~s~dg~v~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~~g~i~v 299 (312)
++.+|.+..+|..+++.+.+....... ..+... .+..|..++.+|.+.+
T Consensus 300 ~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ 349 (394)
T PRK11138 300 VDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHW 349 (394)
T ss_pred EcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEE
Confidence 888999999999888765443221111 111111 2345556666666553
No 305
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.78 E-value=9.1e-06 Score=69.37 Aligned_cols=214 Identities=16% Similarity=0.196 Sum_probs=140.5
Q ss_pred eeCCcEEEEecCCCeEEEEEccCceeeeeecc---------------cccceeEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 047355 68 VAREHWIVCGSDDKFIRVFDYNTMASVKEFEA---------------HEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEK 132 (312)
Q Consensus 68 ~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~---------------h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~ 132 (312)
+.||+.|+- +..|.|.+||.++.... +++- ........+. .+|.+++..|. |..-+.+...
T Consensus 275 nsDGkrIvF-q~~GdIylydP~td~le-kldI~lpl~rk~k~~k~~~pskyledfa~-~~Gd~ia~VSR-GkaFi~~~~~ 350 (668)
T COG4946 275 NSDGKRIVF-QNAGDIYLYDPETDSLE-KLDIGLPLDRKKKQPKFVNPSKYLEDFAV-VNGDYIALVSR-GKAFIMRPWD 350 (668)
T ss_pred CCCCcEEEE-ecCCcEEEeCCCcCcce-eeecCCccccccccccccCHHHhhhhhcc-CCCcEEEEEec-CcEEEECCCC
Confidence 346666654 34578999997764322 2210 0111111222 24678888886 4555554332
Q ss_pred CceeeeEecCCccceEEEEeCCCCCCEEEEEeCCC-eEEEEEcCCCcceeeecccccceeEEEEEEcCCceEEEEEeCCC
Q 047355 133 NWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDG-TIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDF 211 (312)
Q Consensus 133 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg-~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg 211 (312)
+.. .-.++...|....+.. +++.++.|..|| .+-+||.++.+... +...-..+..+. .+++|.+++.+....
T Consensus 351 ~~~---iqv~~~~~VrY~r~~~-~~e~~vigt~dgD~l~iyd~~~~e~kr-~e~~lg~I~av~--vs~dGK~~vvaNdr~ 423 (668)
T COG4946 351 GYS---IQVGKKGGVRYRRIQV-DPEGDVIGTNDGDKLGIYDKDGGEVKR-IEKDLGNIEAVK--VSPDGKKVVVANDRF 423 (668)
T ss_pred Cee---EEcCCCCceEEEEEcc-CCcceEEeccCCceEEEEecCCceEEE-eeCCccceEEEE--EcCCCcEEEEEcCce
Confidence 211 1223444455555554 345788999999 89999998876443 334445566665 578999999999999
Q ss_pred eEEEEeCCCCeEEEEecccccCeEEEEEeCCCcEEEEEeCCC----cEEEEeCCCcceeeecccCccceEEEEEecCCCe
Q 047355 212 TVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITASEDG----TILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQ 287 (312)
Q Consensus 212 ~i~vwd~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~s~dg----~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 287 (312)
+|-+.|+++++....-+...+-|+.++|||+++++|-+=-+| .|+++|..+++... .......-.+-+|.||++.
T Consensus 424 el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~-vTT~ta~DfsPaFD~d~ry 502 (668)
T COG4946 424 ELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYD-VTTPTAYDFSPAFDPDGRY 502 (668)
T ss_pred EEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEE-ecCCcccccCcccCCCCcE
Confidence 999999999886655455566799999999999999887665 58999998766533 2333444567789999999
Q ss_pred EEEEec
Q 047355 288 VAFGCD 293 (312)
Q Consensus 288 l~~~~~ 293 (312)
|-.-+.
T Consensus 503 LYfLs~ 508 (668)
T COG4946 503 LYFLSA 508 (668)
T ss_pred EEEEec
Confidence 876554
No 306
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.77 E-value=1.4e-05 Score=68.32 Aligned_cols=138 Identities=16% Similarity=0.169 Sum_probs=103.8
Q ss_pred cccCcEEEEEEcCCCCeEEEEecCC-eEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEecCCCeEEEEEccCcee
Q 047355 15 QKSDRVKSVDFHPTQPWVLASLYSG-TVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMAS 93 (312)
Q Consensus 15 ~~~~~i~~~~~~~~~~~l~~~~~dg-~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~ 93 (312)
++..+|.-..+..++.-++.|..|| .+-|+|.++.+. +.+...-+.|.++..+++|+.++.+.....|.+.|++++..
T Consensus 357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv 435 (668)
T COG4946 357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNV 435 (668)
T ss_pred CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCe
Confidence 4566788888888888899999999 899999987754 45556667899999999999999998889999999999865
Q ss_pred eeeecccccceeEEEEecCCCEEEEEeCCC----cEEEEeCCCCceeeeEecCCccceEEEEeCCC
Q 047355 94 VKEFEAHEDYIRSLAVHPTFPFVLTASDDK----LIKLWDWEKNWECTQTFEGHSHYVMQSAFNPK 155 (312)
Q Consensus 94 ~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~----~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 155 (312)
...-+...+-|+.++|||+++++|.+--+| .|+++|+....- ........+-.+-+|.|.
T Consensus 436 ~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Ki--y~vTT~ta~DfsPaFD~d 499 (668)
T COG4946 436 RLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKI--YDVTTPTAYDFSPAFDPD 499 (668)
T ss_pred eEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeE--EEecCCcccccCcccCCC
Confidence 444445567799999999999999875554 688999876421 112222233344566664
No 307
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.76 E-value=5.3e-07 Score=72.74 Aligned_cols=237 Identities=18% Similarity=0.300 Sum_probs=145.4
Q ss_pred CceeEEEEeeCCcEEEEecCCCeEEEEEccCce-----eeeeecccc------------cceeEEEEecCC--CEEEEEe
Q 047355 60 SPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMA-----SVKEFEAHE------------DYIRSLAVHPTF--PFVLTAS 120 (312)
Q Consensus 60 ~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~-----~~~~~~~h~------------~~i~~~~~~~~~--~~l~t~s 120 (312)
..|+++.|...|.++++|...|.|.+|.-+... ...+++.|+ .+|..+.|.... ..++..+
T Consensus 27 d~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlst 106 (460)
T COG5170 27 DKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLST 106 (460)
T ss_pred ceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEec
Confidence 468899999999999999999999999754322 223455553 357778775433 3566677
Q ss_pred CCCcEEEEeCCCCce------------------e---e--------------------eEe-cCCccceEEEEeCCCCCC
Q 047355 121 DDKLIKLWDWEKNWE------------------C---T--------------------QTF-EGHSHYVMQSAFNPKDLN 158 (312)
Q Consensus 121 ~d~~v~iwd~~~~~~------------------~---~--------------------~~~-~~~~~~v~~~~~~~~~~~ 158 (312)
.|.++++|.+..... + . +.+ ..|.-.+.++.++. +..
T Consensus 107 NdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns-D~e 185 (460)
T COG5170 107 NDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS-DKE 185 (460)
T ss_pred CCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecC-chh
Confidence 899999998642200 0 0 001 23444455666664 334
Q ss_pred EEEEEeCCCeEEEEEcCCCccee---eecccc-----cceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeE------E
Q 047355 159 TFASASLDGTIQIWNMDSSAAKF---TLDAHE-----KGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTC------V 224 (312)
Q Consensus 159 ~~~s~s~dg~v~iwd~~~~~~~~---~~~~~~-----~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~------~ 224 (312)
.+++ +.|-.|.+|++.-...-+ -+.+|. .-+++..|.+-. ...+.-.+..|+|++-|+++..+ +
T Consensus 186 t~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~-cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl 263 (460)
T COG5170 186 TLLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEM-CNVFMYSSSKGEIKLNDLRQSALCDNSKKL 263 (460)
T ss_pred eeee-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhH-cceEEEecCCCcEEehhhhhhhhccCchhh
Confidence 4544 467889999986432221 122332 224444443322 23445566789999999984321 1
Q ss_pred --EEe--------cccccCeEEEEEeCCCcEEEEEeCCCcEEEEeCCCc-ceeeecccCc------------c---ceEE
Q 047355 225 --QIL--------EGHTNNVTAVCFHPELRIIITASEDGTILIWNATTF-RLQNTLSSGL------------E---RVWS 278 (312)
Q Consensus 225 --~~~--------~~h~~~i~~l~~~~~~~~l~s~s~dg~v~iwd~~~~-~~~~~~~~~~------------~---~v~~ 278 (312)
..+ .+-.+.|..+.|+++|+++++-+. -+|+|||+... ..+.+...|. . .-..
T Consensus 264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFe 342 (460)
T COG5170 264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFE 342 (460)
T ss_pred hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEE
Confidence 011 122356888999999999887764 58999998753 3444443221 1 1356
Q ss_pred EEEecCCCeEEEEecCCeEEEE
Q 047355 279 IGYKKGSNQVAFGCDNGTLIVK 300 (312)
Q Consensus 279 ~~~~~~~~~l~~~~~~g~i~v~ 300 (312)
+.|+.|.+.+++|+-..-..+-
T Consensus 343 isfSgd~~~v~sgsy~NNfgiy 364 (460)
T COG5170 343 ISFSGDDKHVLSGSYSNNFGIY 364 (460)
T ss_pred EEecCCcccccccccccceeee
Confidence 7889888888888765544443
No 308
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.71 E-value=5e-05 Score=61.78 Aligned_cols=213 Identities=12% Similarity=0.038 Sum_probs=126.9
Q ss_pred CCeEEEEEccCceeeeeecccccceeEEE--EecCCCEEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCC
Q 047355 80 DKFIRVFDYNTMASVKEFEAHEDYIRSLA--VHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDL 157 (312)
Q Consensus 80 dg~i~iwd~~~~~~~~~~~~h~~~i~~~~--~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 157 (312)
+|+|..||..+++.+-...- ...+.... ..+.+..+++++.++.+..||..++.. ...+............ ..
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~-~W~~~~~~~~~~~~~~---~~ 76 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDL-GPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKV-LWRFDLPGPISGAPVV---DG 76 (238)
T ss_dssp TSEEEEEETTTTEEEEEEEC-SSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEE-EEEEECSSCGGSGEEE---ET
T ss_pred CCEEEEEECCCCCEEEEEEC-CCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCE-EEEeeccccccceeee---cc
Confidence 68899999988877655532 11122222 233566777788999999999876633 3333221110000111 23
Q ss_pred CEEEEEeCCCeEEEEEcCCCcceeee-cccc--cc-eeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEecccccC
Q 047355 158 NTFASASLDGTIQIWNMDSSAAKFTL-DAHE--KG-INCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNN 233 (312)
Q Consensus 158 ~~~~s~s~dg~v~iwd~~~~~~~~~~-~~~~--~~-v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~ 233 (312)
..++.++.++.++.+|..+++..... .... .. ......... +..++.+..++.|..+|.++++.+.........
T Consensus 77 ~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~ 154 (238)
T PF13360_consen 77 GRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVD--GDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPR 154 (238)
T ss_dssp TEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEE--TTEEEEEETCSEEEEEETTTTEEEEEEESSTT-
T ss_pred cccccccceeeeEecccCCcceeeeeccccccccccccccCceEe--cCEEEEEeccCcEEEEecCCCcEEEEeecCCCC
Confidence 56777778889999999999887763 2221 11 111121222 455777777999999999999988776554322
Q ss_pred ----------eEEEEEeCCCcEEEEEeCCCcEEEEeCCCcceeeecccCccceEEEEEecCCCeEEEEecCCeEEEEecc
Q 047355 234 ----------VTAVCFHPELRIIITASEDGTILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGCDNGTLIVKIGN 303 (312)
Q Consensus 234 ----------i~~l~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~v~~~~ 303 (312)
+.+-....++ .+..++.++.+..+|..+++...+.. ...... ...+.++.|..++.++.+...-..
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~--~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~ 230 (238)
T PF13360_consen 155 GSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP--ISGIYS-LPSVDGGTLYVTSSDGRLYALDLK 230 (238)
T ss_dssp SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC--SS-ECE-CEECCCTEEEEEETTTEEEEEETT
T ss_pred CCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec--CCCccC-CceeeCCEEEEEeCCCEEEEEECC
Confidence 1222222344 67777777754444999988554332 222222 145788888888888888876544
No 309
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.71 E-value=9.2e-05 Score=60.67 Aligned_cols=218 Identities=11% Similarity=0.085 Sum_probs=134.7
Q ss_pred EEEEee-CCcEEEEecCCCeEEEEEccCceeeeeecccccceeEEEEe-cCCCEEEEEeCCCcEEEEeCCCCcee-eeEe
Q 047355 64 TAKFVA-REHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVH-PTFPFVLTASDDKLIKLWDWEKNWEC-TQTF 140 (312)
Q Consensus 64 ~~~~~~-~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~-~~~~~l~t~s~d~~v~iwd~~~~~~~-~~~~ 140 (312)
...|.+ ++.++++-...+.|..|+..+..... +.... ...+++. +++.++ .+... .+.++|....... ....
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g~l~-v~~~~-~~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDGRLY-VADSG-GIAVVDPDTGKVTVLADL 78 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTSEEE-EEETT-CEEEEETTTTEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCCEEE-EEEcC-ceEEEecCCCcEEEEeec
Confidence 456776 56666666678999999998865432 22222 6677777 665544 44544 4555587654221 2222
Q ss_pred --cC-CccceEEEEeCCCCCCEEEEEeCC--------CeEEEEEcCCCcceeeecccccceeEEEEEEcCCceE-EEEEe
Q 047355 141 --EG-HSHYVMQSAFNPKDLNTFASASLD--------GTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVY-LITGS 208 (312)
Q Consensus 141 --~~-~~~~v~~~~~~~~~~~~~~s~s~d--------g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-l~sg~ 208 (312)
.. .......+.+.|. +++.++.... |.|..++.. .+.. .+.......+.+++ ++++.. +++-+
T Consensus 79 ~~~~~~~~~~ND~~vd~~-G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~-~~~~~~~~pNGi~~--s~dg~~lyv~ds 153 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPD-GNLYVTDSGGGGASGIDPGSVYRIDPD-GKVT-VVADGLGFPNGIAF--SPDGKTLYVADS 153 (246)
T ss_dssp ETTCSCTEEEEEEEE-TT-S-EEEEEECCBCTTCGGSEEEEEEETT-SEEE-EEEEEESSEEEEEE--ETTSSEEEEEET
T ss_pred cCCCcccCCCceEEEcCC-CCEEEEecCCCccccccccceEEECCC-CeEE-EEecCcccccceEE--CCcchheeeccc
Confidence 11 3456678888885 4566665543 457777776 3322 22222334455654 677764 45777
Q ss_pred CCCeEEEEeCCC--CeE--EEEe---cccccCeEEEEEeCCCcEEEEEeCCCcEEEEeCCCcceeeecccCccceEEEEE
Q 047355 209 DDFTVKVWDYET--KTC--VQIL---EGHTNNVTAVCFHPELRIIITASEDGTILIWNATTFRLQNTLSSGLERVWSIGY 281 (312)
Q Consensus 209 ~dg~i~vwd~~~--~~~--~~~~---~~h~~~i~~l~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~ 281 (312)
..+.|..+++.. ... ...+ ....+....+++..++++.++.-..+.|.+++.. ++++..+.-...++.+++|
T Consensus 154 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~f 232 (246)
T PF08450_consen 154 FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAF 232 (246)
T ss_dssp TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEE
T ss_pred ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEE
Confidence 888999998752 211 1222 2222347899999999988888888999999976 8888877777678999999
Q ss_pred e-cCCCeEEEEe
Q 047355 282 K-KGSNQVAFGC 292 (312)
Q Consensus 282 ~-~~~~~l~~~~ 292 (312)
. ++.+.|...+
T Consensus 233 gg~~~~~L~vTt 244 (246)
T PF08450_consen 233 GGPDGKTLYVTT 244 (246)
T ss_dssp ESTTSSEEEEEE
T ss_pred ECCCCCEEEEEe
Confidence 5 6766665544
No 310
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=2.2e-06 Score=71.47 Aligned_cols=253 Identities=10% Similarity=0.120 Sum_probs=140.2
Q ss_pred chhhhhhhhhcccCcEEEEEEcCCCC-eEEEEecCCeEEEEeccCCceeeeEEecCCceeEEEEeeC-CcEEEEecCCCe
Q 047355 5 LELQIEKEFIQKSDRVKSVDFHPTQP-WVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAR-EHWIVCGSDDKF 82 (312)
Q Consensus 5 ~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~g~~dg~ 82 (312)
+.+....-+..+..-|..++|+|... .+..++-+.+|+|.|+++......+..+ ..+.+++|.-+ .++|++|...|.
T Consensus 181 ~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~ 259 (463)
T KOG1645|consen 181 HDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGM 259 (463)
T ss_pred CCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCce
Confidence 33444344455677899999999887 5667889999999999998877777776 57888888754 567899999999
Q ss_pred EEEEEccCce-eeeeecc--cccceeEEEE------ecCCCEEEEEeCCCcEEEEeCCCCceeee-Ee-cCCccceEEEE
Q 047355 83 IRVFDYNTMA-SVKEFEA--HEDYIRSLAV------HPTFPFVLTASDDKLIKLWDWEKNWECTQ-TF-EGHSHYVMQSA 151 (312)
Q Consensus 83 i~iwd~~~~~-~~~~~~~--h~~~i~~~~~------~~~~~~l~t~s~d~~v~iwd~~~~~~~~~-~~-~~~~~~v~~~~ 151 (312)
|.+||+...+ ...++.+ -..+|..++. .+.+.+++..+.+ +.+|++.......- .. .+..+...++.
T Consensus 260 VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismq 337 (463)
T KOG1645|consen 260 VLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQ 337 (463)
T ss_pred EEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeee
Confidence 9999987643 2222211 1234444432 2334444444433 55676543221110 00 11123334445
Q ss_pred eCCCCCCEEEEEeCCCe---EE---E-EEcCCCccee-eeccc----ccce-eEEEEEEcCC-ceEEEEEeCCCeEEEEe
Q 047355 152 FNPKDLNTFASASLDGT---IQ---I-WNMDSSAAKF-TLDAH----EKGI-NCIDYFITSD-KVYLITGSDDFTVKVWD 217 (312)
Q Consensus 152 ~~~~~~~~~~s~s~dg~---v~---i-wd~~~~~~~~-~~~~~----~~~v-~~~~~~~~~~-~~~l~sg~~dg~i~vwd 217 (312)
+.+.....+++--.+.+ ++ . -|.+.+..+. ....+ .... +.-++...++ ...+..|...+++.+||
T Consensus 338 y~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D 417 (463)
T KOG1645|consen 338 YHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQD 417 (463)
T ss_pred ecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEec
Confidence 54433333333322110 00 0 0111111100 00011 0000 0001112233 33455666778999999
Q ss_pred CCCCeEEEEecccccCeEEEEEeC-CCcEEEEEeCCCcEEEEeCC
Q 047355 218 YETKTCVQILEGHTNNVTAVCFHP-ELRIIITASEDGTILIWNAT 261 (312)
Q Consensus 218 ~~~~~~~~~~~~h~~~i~~l~~~~-~~~~l~s~s~dg~v~iwd~~ 261 (312)
..+.+.++.+.- ..+|..++... ++.-++..-.|..++|+..+
T Consensus 418 ~~s~evvQ~l~~-~epv~Dicp~~~n~~syLa~LTd~~v~Iyk~e 461 (463)
T KOG1645|consen 418 PHSFEVVQTLAL-SEPVLDICPNDTNGSSYLALLTDDRVHIYKNE 461 (463)
T ss_pred cchhheeeeccc-CcceeecceeecCCcchhhheecceEEEEecC
Confidence 999999998874 57888888765 33333344456688888654
No 311
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.64 E-value=1.1e-06 Score=80.28 Aligned_cols=182 Identities=17% Similarity=0.174 Sum_probs=130.4
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeCCCeEEEEEcCCCcceeeecccccceeE
Q 047355 113 FPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINC 192 (312)
Q Consensus 113 ~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~ 192 (312)
...++-|+--..+..+|+++..+. +...-.+..+.-+.. +...+..|...|+|.+-|.++.+.+.++.+|...+..
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~-r~~~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD 222 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKET-RTTNVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD 222 (1118)
T ss_pred Ccceeecchhhheeeeecccceee-eeeeccCCceEEEEe---cCcEEEeecccceEEeecCCcCceeeeeeccccceee
Confidence 345667777777888888765332 222222223444444 3467888999999999999999999999999998886
Q ss_pred EEEEEcCCceEEEEEeC---------CCeEEEEeCCCCeEEEEecccccCeEEEEEeCC-CcEEEEEeCCCcEEEEeCCC
Q 047355 193 IDYFITSDKVYLITGSD---------DFTVKVWDYETKTCVQILEGHTNNVTAVCFHPE-LRIIITASEDGTILIWNATT 262 (312)
Q Consensus 193 ~~~~~~~~~~~l~sg~~---------dg~i~vwd~~~~~~~~~~~~h~~~i~~l~~~~~-~~~l~s~s~dg~v~iwd~~~ 262 (312)
++. .|+.|++++. |..|+|||++..+.+..+.-+-++ .=+.|+|. ...++.++..|...+-|..+
T Consensus 223 fDv----~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~ 297 (1118)
T KOG1275|consen 223 FDV----QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTAT 297 (1118)
T ss_pred eec----cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccc
Confidence 653 4667787765 567999999887666555545544 45788885 35688888899999999433
Q ss_pred c---ceeeecccC-ccceEEEEEecCCCeEEEEecCCeEEEEecc
Q 047355 263 F---RLQNTLSSG-LERVWSIGYKKGSNQVAFGCDNGTLIVKIGN 303 (312)
Q Consensus 263 ~---~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~g~i~v~~~~ 303 (312)
. .....+... ...+.++.++++++.|++|..+|.|.+|..+
T Consensus 298 lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~~ 342 (1118)
T KOG1275|consen 298 LSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWADR 342 (1118)
T ss_pred cCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecCC
Confidence 2 121222222 2348899999999999999999999999855
No 312
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=5.3e-07 Score=76.11 Aligned_cols=200 Identities=15% Similarity=0.163 Sum_probs=134.1
Q ss_pred ccccceeEEEEecCCCEEEEEeCCCcEEEEeCCC--CceeeeEecCCccceEEEEeCCCCCCEEEEEeC-CCeEEEEEcC
Q 047355 99 AHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEK--NWECTQTFEGHSHYVMQSAFNPKDLNTFASASL-DGTIQIWNMD 175 (312)
Q Consensus 99 ~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~-dg~v~iwd~~ 175 (312)
-|.+.|+.+... ..+++++++-||.+++|--.. ..+.+..+..|...+..+..+- ++.++.|.+. |..++++|+.
T Consensus 7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~-dg~L~~Sv~d~Dhs~KvfDvE 84 (558)
T KOG0882|consen 7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSY-DGWLFRSVEDPDHSVKVFDVE 84 (558)
T ss_pred cccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccc-cceeEeeccCcccceeEEEee
Confidence 477777777654 346899999999999996432 1223344566666666666554 5578888777 9999999987
Q ss_pred CCcceee--ecccccceeEEEEEEcCC-c--eEEEEEeCCCeEEEEeCCCCeE--EEEecccccCeEEEEEeCCCcEEEE
Q 047355 176 SSAAKFT--LDAHEKGINCIDYFITSD-K--VYLITGSDDFTVKVWDYETKTC--VQILEGHTNNVTAVCFHPELRIIIT 248 (312)
Q Consensus 176 ~~~~~~~--~~~~~~~v~~~~~~~~~~-~--~~l~sg~~dg~i~vwd~~~~~~--~~~~~~h~~~i~~l~~~~~~~~l~s 248 (312)
+-....- +.--...+ .|..++. . ...++.-.++.+.++|-....+ ...-.-|..+|..+.++|.+..+.+
T Consensus 85 n~DminmiKL~~lPg~a---~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vS 161 (558)
T KOG0882|consen 85 NFDMINMIKLVDLPGFA---EWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVS 161 (558)
T ss_pred ccchhhhcccccCCCce---EEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceee
Confidence 6433211 11111111 2222221 1 3333445688999999765432 2333568999999999999999999
Q ss_pred EeCCCcEEEEeCCC-cceee-----e---------cccCccceEEEEEecCCCeEEEEecCCeEEEEecc
Q 047355 249 ASEDGTILIWNATT-FRLQN-----T---------LSSGLERVWSIGYKKGSNQVAFGCDNGTLIVKIGN 303 (312)
Q Consensus 249 ~s~dg~v~iwd~~~-~~~~~-----~---------~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~v~~~~ 303 (312)
....|.|.-|.... ++... . +.-......++.|+|+|+++++-+.|.+|++.+..
T Consensus 162 iD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~K 231 (558)
T KOG0882|consen 162 IDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFK 231 (558)
T ss_pred ccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEec
Confidence 99999999998762 22111 1 11123457899999999999999999999988765
No 313
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.63 E-value=2.3e-05 Score=62.84 Aligned_cols=195 Identities=10% Similarity=0.103 Sum_probs=107.8
Q ss_pred cEEEEEEcCCCCeEEEEecCCeEEEEeccCCceeeeEEe-------cCCceeEEEEeeC---C---cEEEEecCCCeEEE
Q 047355 19 RVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKV-------TDSPVRTAKFVAR---E---HWIVCGSDDKFIRV 85 (312)
Q Consensus 19 ~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~-------~~~~v~~~~~~~~---~---~~l~~g~~dg~i~i 85 (312)
.=+.++|+||+..||.+...|+|+++|+...... .+.. ....|..+.|.+- . ..|+.-..+|.++-
T Consensus 45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf-~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~S 123 (282)
T PF15492_consen 45 QWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELF-VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRS 123 (282)
T ss_pred hheEEEECCCCcEEEEEcCCCeEEEEecccceeE-EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeee
Confidence 4567999999999999999999999998754322 2211 1235666666542 1 24666677888888
Q ss_pred EEccC-----ceeeeeec---ccccceeEEEEecCCCEEEEEeCCCcE-EEEeCCC-CceeeeEecCCccceEEEEeCCC
Q 047355 86 FDYNT-----MASVKEFE---AHEDYIRSLAVHPTFPFVLTASDDKLI-KLWDWEK-NWECTQTFEGHSHYVMQSAFNPK 155 (312)
Q Consensus 86 wd~~~-----~~~~~~~~---~h~~~i~~~~~~~~~~~l~t~s~d~~v-~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~~ 155 (312)
|-+.. ....+.+. .+...|.++.++|..++|+.||....= ..+.... +...-+.+.+...+
T Consensus 124 y~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyy--------- 194 (282)
T PF15492_consen 124 YLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYY--------- 194 (282)
T ss_pred EEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcE---------
Confidence 86532 12222222 235679999999999988877754220 0000000 00000111111111
Q ss_pred CCCEEEEEeCCCe------EEEEEcCCCcceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEec
Q 047355 156 DLNTFASASLDGT------IQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILE 228 (312)
Q Consensus 156 ~~~~~~s~s~dg~------v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~ 228 (312)
..++...|+. -.+|.+-+..........+..|..+. .+|||..||+...+|.|.+|++-+........
T Consensus 195 ---k~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmS--lSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~ 268 (282)
T PF15492_consen 195 ---KQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMS--LSPDGSLLACIHFSGSLSLWEIPSLRLQRSWK 268 (282)
T ss_pred ---EEccccCccccccccccceeeccceeeeeccccCCCceEEEE--ECCCCCEEEEEEcCCeEEEEecCcchhhcccc
Confidence 1112221211 12222221111111112234455554 68999999999999999999997766555544
No 314
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.61 E-value=3.9e-08 Score=89.24 Aligned_cols=218 Identities=15% Similarity=0.197 Sum_probs=145.8
Q ss_pred hhhhcccCcEEEEEEcCCCCeEEEEecCCeEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEecCC--CeEEEEEc
Q 047355 11 KEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDD--KFIRVFDY 88 (312)
Q Consensus 11 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d--g~i~iwd~ 88 (312)
+.|..+....++++|+.+.++|+.|...|.|++++..++........|.++++.+.-+.+|..+++.+.- .-..+|+.
T Consensus 1095 ~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~ 1174 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDA 1174 (1516)
T ss_pred hhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhcc
Confidence 4566788899999999999999999999999999999999899999999999999999898887765432 35788988
Q ss_pred cC-ceeeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEecC---CccceEEEEeCCCCCCEEEEEe
Q 047355 89 NT-MASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEG---HSHYVMQSAFNPKDLNTFASAS 164 (312)
Q Consensus 89 ~~-~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~s~s 164 (312)
.+ +.+.+.|.+ -.++.|+....+-+.|..-....+||+.+...+...+.+ ....-....|+|.+ .+++
T Consensus 1175 ~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D-~LIl--- 1246 (1516)
T KOG1832|consen 1175 SSTGGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCD-TLIL--- 1246 (1516)
T ss_pred ccccCccccccc----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCc-ceEe---
Confidence 65 233444432 345667665544455555567889999876433222221 11122456788865 3444
Q ss_pred CCCeEEEEEcCCCcceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEecccccCeEEEEEeCCCc
Q 047355 165 LDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELR 244 (312)
Q Consensus 165 ~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~i~~l~~~~~~~ 244 (312)
.|| .+||.+..+.+..+......... .+.|.|.-++.- -.+||+++.+.++....-. -..+.|+..|.
T Consensus 1247 ndG--vLWDvR~~~aIh~FD~ft~~~~G---~FHP~g~eVIIN-----SEIwD~RTF~lLh~VP~Ld--qc~VtFNstG~ 1314 (1516)
T KOG1832|consen 1247 NDG--VLWDVRIPEAIHRFDQFTDYGGG---GFHPSGNEVIIN-----SEIWDMRTFKLLHSVPSLD--QCAVTFNSTGD 1314 (1516)
T ss_pred eCc--eeeeeccHHHHhhhhhheecccc---cccCCCceEEee-----chhhhhHHHHHHhcCcccc--ceEEEeccCcc
Confidence 355 68999987766655433211111 134555544432 3589999988776554332 34678888877
Q ss_pred EEEE
Q 047355 245 IIIT 248 (312)
Q Consensus 245 ~l~s 248 (312)
.+..
T Consensus 1315 VmYa 1318 (1516)
T KOG1832|consen 1315 VMYA 1318 (1516)
T ss_pred chhh
Confidence 5543
No 315
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.57 E-value=1.5e-05 Score=72.72 Aligned_cols=207 Identities=12% Similarity=0.197 Sum_probs=128.9
Q ss_pred EEEcCCCCeEEEEecCCeEEEEeccCCceeeeEEecCCc-eeEEEEeeCCcEEEEecCCC-----eEEEEEccCce----
Q 047355 23 VDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSP-VRTAKFVAREHWIVCGSDDK-----FIRVFDYNTMA---- 92 (312)
Q Consensus 23 ~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~g~~dg-----~i~iwd~~~~~---- 92 (312)
-+|++.+..++.|..+|.|.+.+- +.+....++.+... +..+....+..+|++.++|+ .+++|+++...
T Consensus 29 sc~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred eEEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 357888899999999999888863 23333556655555 44444444556788877764 49999986531
Q ss_pred --ee--eeecc-----cccceeEEEEecCCCEEEEEeCCCcEEEEeCC--CCc-eeeeEecCCccceEEEEeCCCCCCEE
Q 047355 93 --SV--KEFEA-----HEDYIRSLAVHPTFPFVLTASDDKLIKLWDWE--KNW-ECTQTFEGHSHYVMQSAFNPKDLNTF 160 (312)
Q Consensus 93 --~~--~~~~~-----h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~--~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~ 160 (312)
++ ..+.. ...++.+++++.+-+.++.|-.+|.|..+... +.. ...........+|+.+.+.......+
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~l 187 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVL 187 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeE
Confidence 22 11112 25678899999999999999999999998532 110 11111223456788888875433322
Q ss_pred EEEeCCCeEEEEEcCCCcc-eeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEec-ccccCe
Q 047355 161 ASASLDGTIQIWNMDSSAA-KFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILE-GHTNNV 234 (312)
Q Consensus 161 ~s~s~dg~v~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~-~h~~~i 234 (312)
.++ ....|.+|.+....+ ...+..|..+++|..+.. +.+.+++++ +..+.+|+.....+-..+. +|...+
T Consensus 188 Fv~-Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~-~t~qfIca~--~e~l~fY~sd~~~~cfaf~~g~kk~~ 259 (933)
T KOG2114|consen 188 FVA-TTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSD-GTYQFICAG--SEFLYFYDSDGRGPCFAFEVGEKKEM 259 (933)
T ss_pred EEE-ecceeEEEEecCCCcceeeeccCCccceeeecCC-CCccEEEec--CceEEEEcCCCcceeeeecCCCeEEE
Confidence 222 345688998875553 334667777788876532 223344433 4579999987655555555 665543
No 316
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.55 E-value=4e-06 Score=76.31 Aligned_cols=109 Identities=17% Similarity=0.275 Sum_probs=87.3
Q ss_pred EEEEEcCCCCeEEEEe----cCCeEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEecCCCeEEEEEccCceeeee
Q 047355 21 KSVDFHPTQPWVLASL----YSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKE 96 (312)
Q Consensus 21 ~~~~~~~~~~~l~~~~----~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~ 96 (312)
.-.+|||..+++++++ ..|+|.||- +++++.+.+.- .-.+.+++|+|..-.|+.|-+-|.+.+|...+.+.-..
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~-P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv 96 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTY-PVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTV 96 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccccc-ceehhhhccChHHHHHhhccccceeEEEecCCceeeee
Confidence 4457999999999876 468899984 34444332221 11355689999888888999999999999888777777
Q ss_pred ecccccceeEEEEecCCCEEEEEeCCCcEEEEeCC
Q 047355 97 FEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWE 131 (312)
Q Consensus 97 ~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~ 131 (312)
...|..+|..+.|+++|..++|+..=|.+.+|...
T Consensus 97 ~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 97 VETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred ccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 78999999999999999999999999999999754
No 317
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.55 E-value=8.7e-05 Score=67.93 Aligned_cols=202 Identities=15% Similarity=0.233 Sum_probs=127.0
Q ss_pred EEEEeeCCcEEEEecCCCeEEEEEccCceeeeeecccccc-eeEEEEecCCCEEEEEeCCC-----cEEEEeCCCC----
Q 047355 64 TAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDY-IRSLAVHPTFPFVLTASDDK-----LIKLWDWEKN---- 133 (312)
Q Consensus 64 ~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~-i~~~~~~~~~~~l~t~s~d~-----~v~iwd~~~~---- 133 (312)
.-++.+.+..++.|+.+|.|.+.+- +.+.++.++.+... |..+-......+|++.+.|+ .+++||++..
T Consensus 28 isc~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~ 106 (933)
T KOG2114|consen 28 ISCCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN 106 (933)
T ss_pred eeEEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCC
Confidence 3457788889999999999888763 23455777777776 44444444446777776655 4899998643
Q ss_pred -ceee--eEecC-----CccceEEEEeCCCCCCEEEEEeCCCeEEEEEcCCCc---ce-eeecccccceeEEEEEEcCCc
Q 047355 134 -WECT--QTFEG-----HSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSA---AK-FTLDAHEKGINCIDYFITSDK 201 (312)
Q Consensus 134 -~~~~--~~~~~-----~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~---~~-~~~~~~~~~v~~~~~~~~~~~ 201 (312)
..+. ..... ...++..++.+. +...++.|..||.|..+.-+-.. .+ ........+|+.+.+...+..
T Consensus 107 sP~c~~~~ri~~~~np~~~~p~s~l~Vs~-~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s 185 (933)
T KOG2114|consen 107 SPQCLYEHRIFTIKNPTNPSPASSLAVSE-DLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKS 185 (933)
T ss_pred CcceeeeeeeeccCCCCCCCcceEEEEEc-cccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCce
Confidence 1222 11222 233445555554 46788999999999998653211 11 112233467888876433322
Q ss_pred eEEEEEeCCCeEEEEeCCCCe-EEEEecccccCeEEEEEeCCCcEEEEEeCCCcEEEEeCCCcceeeecc
Q 047355 202 VYLITGSDDFTVKVWDYETKT-CVQILEGHTNNVTAVCFHPELRIIITASEDGTILIWNATTFRLQNTLS 270 (312)
Q Consensus 202 ~~l~sg~~dg~i~vwd~~~~~-~~~~~~~h~~~i~~l~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~ 270 (312)
. ++++ ....|.+|.+.... ..+.+..|..+++|-.|++....+++++. .-+.+|+....+...++.
T Consensus 186 ~-lFv~-Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 186 V-LFVA-TTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred e-EEEE-ecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcCCCcceeeeec
Confidence 2 3333 34579999987444 35567888889999999987665666553 468899987555544443
No 318
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=1.8e-05 Score=66.26 Aligned_cols=99 Identities=14% Similarity=0.109 Sum_probs=74.5
Q ss_pred EEEEeccCCceeeeEEecCCceeEEEEeeCCc-EEEEecCCCeEEEEEccCceeeeeecccccceeEEEEecCCC-EEEE
Q 047355 41 VCIWNYHSQTTEKSVKVTDSPVRTAKFVAREH-WIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFP-FVLT 118 (312)
Q Consensus 41 v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~-~l~t 118 (312)
|++.+-.+.+....+..+...|+.++|+|..+ ++..++-+..|++.|+++......+..| ..+.+++|.-+.. +|..
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa 253 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA 253 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence 44554444444444445566799999999766 6788999999999999998888888888 7899999987665 4556
Q ss_pred EeCCCcEEEEeCCCCceeeeEe
Q 047355 119 ASDDKLIKLWDWEKNWECTQTF 140 (312)
Q Consensus 119 ~s~d~~v~iwd~~~~~~~~~~~ 140 (312)
|-..|.|.+||++........+
T Consensus 254 Gl~nG~VlvyD~R~~~~~~~e~ 275 (463)
T KOG1645|consen 254 GLQNGMVLVYDMRQPEGPLMEL 275 (463)
T ss_pred eccCceEEEEEccCCCchHhhh
Confidence 7779999999998765544443
No 319
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.52 E-value=5.1e-05 Score=71.87 Aligned_cols=234 Identities=12% Similarity=0.144 Sum_probs=134.5
Q ss_pred CCceeEEEEeeCCcEEEEecCCCeEEEEEccCceeeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeee
Q 047355 59 DSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQ 138 (312)
Q Consensus 59 ~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~ 138 (312)
+..|.++.|..+...|+.+..+|.|.+-|.++... .....-...|.+++|+|++..++..+..+++.+.+-. ..++.
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~-eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~--f~~i~ 144 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLEL-EIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKD--FEPIA 144 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccce-eeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEecc--ccchh
Confidence 35789999999999999999999999998877532 3344456779999999999999888888888776421 11111
Q ss_pred E--ec---CCccceEEEEeCCCCCCEEEEEeCCCeEEEEEcCCCcc-eeeecccccceeEEEEEEcCCceEEEE-----E
Q 047355 139 T--FE---GHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAA-KFTLDAHEKGINCIDYFITSDKVYLIT-----G 207 (312)
Q Consensus 139 ~--~~---~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~l~s-----g 207 (312)
. +. ...+....+.|-....+ +-|+ .|....-+...... ....+.+.. -..+. +-.||.++|+ .
T Consensus 145 E~~L~~d~~~~sk~v~VGwGrkeTq--frgs-~gr~~~~~~~~~ek~~~~~~~~~~-~~~Is--WRgDg~~fAVs~~~~~ 218 (1265)
T KOG1920|consen 145 EKPLDADDERKSKFVNVGWGRKETQ--FRGS-EGRQAARQKIEKEKALEQIEQDDH-KTSIS--WRGDGEYFAVSFVESE 218 (1265)
T ss_pred ccccccccccccccceeccccccee--eecc-hhhhcccccccccccccchhhccC-CceEE--EccCCcEEEEEEEecc
Confidence 0 10 00111222333221111 1111 01111111000000 000011111 12333 3578888877 3
Q ss_pred eCCCeEEEEeCCCCeEEEEecccccCeEEEEEeCCCcEEEEEe---CCCcEEEEeCCC---cceeeecccCccceEEEEE
Q 047355 208 SDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITAS---EDGTILIWNATT---FRLQNTLSSGLERVWSIGY 281 (312)
Q Consensus 208 ~~dg~i~vwd~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~s---~dg~v~iwd~~~---~~~~~~~~~~~~~v~~~~~ 281 (312)
.....|+|||-+ +.+-..-..-...=.+++|-|.|.++|+-. +|+.|.+|.-+. +...-.+......+..++|
T Consensus 219 ~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~W 297 (1265)
T KOG1920|consen 219 TGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAW 297 (1265)
T ss_pred CCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeee
Confidence 333789999976 433222222223346899999999888764 466799997432 2222223333334899999
Q ss_pred ecCCCeEEE---EecCCeEEEEec
Q 047355 282 KKGSNQVAF---GCDNGTLIVKIG 302 (312)
Q Consensus 282 ~~~~~~l~~---~~~~g~i~v~~~ 302 (312)
+.++..||. ...+..|++|-.
T Consensus 298 ns~sdiLAv~~~~~e~~~v~lwt~ 321 (1265)
T KOG1920|consen 298 NSNSDILAVVTSNLENSLVQLWTT 321 (1265)
T ss_pred cCCCCceeeeecccccceEEEEEe
Confidence 999999998 555555777753
No 320
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.52 E-value=0.00012 Score=63.68 Aligned_cols=275 Identities=13% Similarity=0.149 Sum_probs=139.0
Q ss_pred cEEEEEEcCCCCeEEEEecCCeEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEecCCCeEEEEEccC--------
Q 047355 19 RVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNT-------- 90 (312)
Q Consensus 19 ~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~-------- 90 (312)
.|..+.|.++..-|++|...|.|.||.+...+... .....+-....|.+- ..+++.-.+-|+..
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~~~------~~~~~~~~l~di~~r~~~~~~~ 74 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFRRF------SLNNSPGKLTDISDRAPPSLKE 74 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S--------GGGSS-SEEE-GGG--TT-SE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCcccccc------cccCCCcceEEehhhCCccccc
Confidence 58999999999999999999999999886543221 001111111111110 00111222333322
Q ss_pred -ceeeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeee-EecC------CccceEEEEeC----CCCC-
Q 047355 91 -MASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQ-TFEG------HSHYVMQSAFN----PKDL- 157 (312)
Q Consensus 91 -~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~-~~~~------~~~~v~~~~~~----~~~~- 157 (312)
..+..-+....++|++++.+. =.+++.|..+|.+.|.|++...-... .+.. ...++..+.|. ..+.
T Consensus 75 gf~P~~l~~~~~g~vtal~~S~-iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~y 153 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNSD-IGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGY 153 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE-B-TSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSS
T ss_pred ccCchhheeccCCcEeEEecCC-CcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcc
Confidence 223334455678999999874 45899999999999999976532211 1111 22345555553 1122
Q ss_pred --CEEEEEeCCCeEEEEEcCC-Ccceee------ecccccceeEEEEEEcCC--------------------ceEEEEEe
Q 047355 158 --NTFASASLDGTIQIWNMDS-SAAKFT------LDAHEKGINCIDYFITSD--------------------KVYLITGS 208 (312)
Q Consensus 158 --~~~~s~s~dg~v~iwd~~~-~~~~~~------~~~~~~~v~~~~~~~~~~--------------------~~~l~sg~ 208 (312)
-.+++|+..|.+.+|.+.- ....+. ...+...+..+....... ..+++..
T Consensus 154 SSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv- 232 (395)
T PF08596_consen 154 SSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV- 232 (395)
T ss_dssp EEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-
T ss_pred cceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE-
Confidence 4688899999999998752 211111 112334444444321111 1234444
Q ss_pred CCCeEEEEeCCCCeEEEEecccccCeEEEEE-----eCCCcEEEEEeCCCcEEEEeCCCcceeeecccC----ccceEEE
Q 047355 209 DDFTVKVWDYETKTCVQILEGHTNNVTAVCF-----HPELRIIITASEDGTILIWNATTFRLQNTLSSG----LERVWSI 279 (312)
Q Consensus 209 ~dg~i~vwd~~~~~~~~~~~~h~~~i~~l~~-----~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~----~~~v~~~ 279 (312)
.+..++++...+.+..+......-....+.+ ...+..|++-..+|.|+++.++..+.+..+.-. .......
T Consensus 233 Se~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~s 312 (395)
T PF08596_consen 233 SESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSS 312 (395)
T ss_dssp -SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-
T ss_pred cccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCcccccccccc
Confidence 4667999998777665544322222334445 235677889999999999999998877665542 1234455
Q ss_pred EEecCCCeEEEEecCCeEEEEecc
Q 047355 280 GYKKGSNQVAFGCDNGTLIVKIGN 303 (312)
Q Consensus 280 ~~~~~~~~l~~~~~~g~i~v~~~~ 303 (312)
.|+++|..+...+.....++-+..
T Consensus 313 sis~~Gdi~~~~gpsE~~l~sv~~ 336 (395)
T PF08596_consen 313 SISRNGDIFYWTGPSEIQLFSVWG 336 (395)
T ss_dssp EE-TTS-EEEE-SSSEEEEEEEES
T ss_pred EECCCCCEEEEeCcccEEEEEEEc
Confidence 668888888777766655554443
No 321
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.45 E-value=0.00071 Score=57.72 Aligned_cols=268 Identities=14% Similarity=0.170 Sum_probs=117.7
Q ss_pred EEcCCCCeEE-EEecCCeE--EEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEecCCCeEEEEEccCceeeeeeccc
Q 047355 24 DFHPTQPWVL-ASLYSGTV--CIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAH 100 (312)
Q Consensus 24 ~~~~~~~~l~-~~~~dg~v--~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h 100 (312)
+|.+||+.|+ ++..||.- .+.|+++++..+..............+++++.++-......|+..|+++.+....++..
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p 121 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVP 121 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECC
Confidence 5678886655 55556654 45567776654443332222334456677777655545568888899998766666666
Q ss_pred ccceeEEEE--ecCCCEEEEEeC---CC-------------------cEEEEeCCCCceeeeEecCCccceEEEEeCCCC
Q 047355 101 EDYIRSLAV--HPTFPFVLTASD---DK-------------------LIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKD 156 (312)
Q Consensus 101 ~~~i~~~~~--~~~~~~l~t~s~---d~-------------------~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 156 (312)
...+-...+ +.++..++-.-. |. .|.--|+.++ + ...+-.....+..+.|+|.+
T Consensus 122 ~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG-~-~~~v~~~~~wlgH~~fsP~d 199 (386)
T PF14583_consen 122 DDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTG-E-RKVVFEDTDWLGHVQFSPTD 199 (386)
T ss_dssp TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT----EEEEEEESS-EEEEEEETTE
T ss_pred cccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCC-c-eeEEEecCccccCcccCCCC
Confidence 655543444 345555432211 10 0000111111 0 11111223345677899988
Q ss_pred CCEEEEEeCCC----eEEEEEcCCCcc-eeeecccccceeEEEEEEcCCceEEEE-----EeCCCeEEEEeCCCCeEEEE
Q 047355 157 LNTFASASLDG----TIQIWNMDSSAA-KFTLDAHEKGINCIDYFITSDKVYLIT-----GSDDFTVKVWDYETKTCVQI 226 (312)
Q Consensus 157 ~~~~~s~s~dg----~v~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~l~s-----g~~dg~i~vwd~~~~~~~~~ 226 (312)
+.+++-|-+.. .-|||-+++... ...+..+.....+--=.+.+||..|.- ++.+..|.-+|..+++....
T Consensus 200 p~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~ 279 (386)
T PF14583_consen 200 PTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRL 279 (386)
T ss_dssp EEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEE
T ss_pred CCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEE
Confidence 88887775422 236776654322 122222222222222224566654432 22344677778887765443
Q ss_pred ecccccCeEEEEEeCCCcEEEEEeCCC----------------cEEEEeCCCcceeeecccCc-----------cceEEE
Q 047355 227 LEGHTNNVTAVCFHPELRIIITASEDG----------------TILIWNATTFRLQNTLSSGL-----------ERVWSI 279 (312)
Q Consensus 227 ~~~h~~~i~~l~~~~~~~~l~s~s~dg----------------~v~iwd~~~~~~~~~~~~~~-----------~~v~~~ 279 (312)
.. ..+-..+--++|+++++-=+.|. -|++++.+..+.. .+..|. ..-.-+
T Consensus 280 ~~--~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~-~l~~h~~sw~v~~~~~q~~hPhp 356 (386)
T PF14583_consen 280 ME--MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFR-KLARHDTSWKVLDGDRQVTHPHP 356 (386)
T ss_dssp EE--E-SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEE-EEEE-------BTTBSSTT----
T ss_pred Ee--CCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCcee-eeeeccCcceeecCCCccCCCCC
Confidence 22 22333444568888776544442 4566787664432 111111 113567
Q ss_pred EEecCCCeEEEEec-CCe
Q 047355 280 GYKKGSNQVAFGCD-NGT 296 (312)
Q Consensus 280 ~~~~~~~~l~~~~~-~g~ 296 (312)
.|+||++.+++.|+ .|.
T Consensus 357 ~FSPDgk~VlF~Sd~~G~ 374 (386)
T PF14583_consen 357 SFSPDGKWVLFRSDMEGP 374 (386)
T ss_dssp EE-TTSSEEEEEE-TTSS
T ss_pred ccCCCCCEEEEECCCCCC
Confidence 89999999999888 444
No 322
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.42 E-value=2e-05 Score=71.40 Aligned_cols=183 Identities=15% Similarity=0.235 Sum_probs=123.1
Q ss_pred ccCcEEEEEEcCCCCeEEEEecCCeEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEecCCCeEEEEEccCceeee
Q 047355 16 KSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVK 95 (312)
Q Consensus 16 ~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~ 95 (312)
..+.+.+.+++ +++++-|.-+|.|++.+.+... ++.-.+... ..+|+++++++.||+|.+-.+.+.....
T Consensus 38 ~~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~--~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~ 107 (846)
T KOG2066|consen 38 QNDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP--KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEIT 107 (846)
T ss_pred hhhHHHHHHhh--cceeeeccccceEEEEecCCcc--ccccccccc------ccCCceEEEecCCCcEEEeeccCCccce
Confidence 45778888885 6789999999999999986542 222222222 5679999999999999999887766544
Q ss_pred eecccccceeEEEEecC-----CCEEEEEeCCCcEEEEeCC--CCceeeeEecCCccceEEEEeCCCCCCEEEEEeCCCe
Q 047355 96 EFEAHEDYIRSLAVHPT-----FPFVLTASDDKLIKLWDWE--KNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGT 168 (312)
Q Consensus 96 ~~~~h~~~i~~~~~~~~-----~~~l~t~s~d~~v~iwd~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~ 168 (312)
++. -..++.+++++|+ .+.+++||.-| +.++.-+ .+... .......++|.++.|. ++++|-++.+|
T Consensus 108 ~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~-v~l~~~eG~I~~i~W~---g~lIAWand~G- 180 (846)
T KOG2066|consen 108 QYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDS-VVLSEGEGPIHSIKWR---GNLIAWANDDG- 180 (846)
T ss_pred eEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccc-eeeecCccceEEEEec---CcEEEEecCCC-
Confidence 442 3468999999998 35788999888 7776522 11111 1344456788888886 36888888777
Q ss_pred EEEEEcCCCcceeeeccccccee------EEEEEEcCCceEEEEEeCCCeEEEEeCC
Q 047355 169 IQIWNMDSSAAKFTLDAHEKGIN------CIDYFITSDKVYLITGSDDFTVKVWDYE 219 (312)
Q Consensus 169 v~iwd~~~~~~~~~~~~~~~~v~------~~~~~~~~~~~~l~sg~~dg~i~vwd~~ 219 (312)
|++||..+.+.+..++.....++ .+.| .++ ..++-|-.| +|++..++
T Consensus 181 v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W--~~~-~~LVIGW~d-~v~i~~I~ 233 (846)
T KOG2066|consen 181 VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHW--QDE-DRLVIGWGD-SVKICSIK 233 (846)
T ss_pred cEEEeccccceeeccCCCCCCCCcccCCCceEe--cCC-CeEEEecCC-eEEEEEEe
Confidence 79999988776655543322221 2222 233 345555444 57777765
No 323
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.42 E-value=0.00018 Score=68.31 Aligned_cols=268 Identities=10% Similarity=0.138 Sum_probs=146.9
Q ss_pred cCcEEEEEEcCCCCeEEEEecCCeEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEecCCCeEEEEEccCceeeee
Q 047355 17 SDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKE 96 (312)
Q Consensus 17 ~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~ 96 (312)
++.|.++.|..+...++.+..+|.|.+-|.++... ......+..|.++.|+||+++++..+..+++.+-. .+..++.+
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~-eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT-~~f~~i~E 145 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLEL-EIVGNVDNGISAASWSPDEELLALITGRQTLLFMT-KDFEPIAE 145 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccce-eeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEe-ccccchhc
Confidence 36899999999999999999999999998776543 33445567899999999999999998888876653 33333332
Q ss_pred ecccccceeEEEEecCCCEEEEEeCCCc---E-------EEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEe--
Q 047355 97 FEAHEDYIRSLAVHPTFPFVLTASDDKL---I-------KLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASAS-- 164 (312)
Q Consensus 97 ~~~h~~~i~~~~~~~~~~~l~t~s~d~~---v-------~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s-- 164 (312)
..-+. .-.+.++ .+++++... + +-.+............-+. .-..+.|.. ++.+|++..
T Consensus 146 ~~L~~------d~~~~sk-~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~-~~~~IsWRg-Dg~~fAVs~~~ 216 (1265)
T KOG1920|consen 146 KPLDA------DDERKSK-FVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDD-HKTSISWRG-DGEYFAVSFVE 216 (1265)
T ss_pred ccccc------ccccccc-cceecccccceeeecchhhhcccccccccccccchhhcc-CCceEEEcc-CCcEEEEEEEe
Confidence 22111 1111111 223333221 1 1111000000000000111 113456664 567777732
Q ss_pred ---CCCeEEEEEcCCCcceeeecccccceeEEEEEEcCCceEEEEEe---CCCeEEEEeCC---CCeEEEEecccccCeE
Q 047355 165 ---LDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGS---DDFTVKVWDYE---TKTCVQILEGHTNNVT 235 (312)
Q Consensus 165 ---~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~---~dg~i~vwd~~---~~~~~~~~~~h~~~i~ 235 (312)
....+++||-. +.....-.....--.++.| -|.|..+++-. .|+.|.+|.-. .+...-.+..-..++.
T Consensus 217 ~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsW--kPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve 293 (1265)
T KOG1920|consen 217 SETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSW--KPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVE 293 (1265)
T ss_pred ccCCceeEEEeccc-chhhcccCcccccccceee--cCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchh
Confidence 23789999976 2221111111111234554 45667777632 35578888632 1222222222334589
Q ss_pred EEEEeCCCcEEEE---EeCCCcEEEEeCCCcc--eeeecccCccceEEEEEecC-CCeEEEEecCCeEEEE
Q 047355 236 AVCFHPELRIIIT---ASEDGTILIWNATTFR--LQNTLSSGLERVWSIGYKKG-SNQVAFGCDNGTLIVK 300 (312)
Q Consensus 236 ~l~~~~~~~~l~s---~s~dg~v~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~g~i~v~ 300 (312)
.++|+.++..||. ......|++|-+.++. +...+....... +.|+|. .+.|..-..+|...+.
T Consensus 294 ~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~ 362 (1265)
T KOG1920|consen 294 ELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPVTEKTLHVLRESGQRLVR 362 (1265)
T ss_pred eeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEecccccc--ccccCCCceeEEEEecCCcEEEE
Confidence 9999999999987 4555559999988753 333333222222 677764 2334444455554433
No 324
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.34 E-value=0.00059 Score=61.77 Aligned_cols=262 Identities=13% Similarity=0.102 Sum_probs=139.6
Q ss_pred CCeEEEEecCCeEEEEeccCCceeeeEEecCC------c-eeEEEEeeCCcEEEEecCCCeEEEEEccCceeeeeecccc
Q 047355 29 QPWVLASLYSGTVCIWNYHSQTTEKSVKVTDS------P-VRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHE 101 (312)
Q Consensus 29 ~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~------~-v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~ 101 (312)
+..++.+..++.+.-.|..+++.+-.+..... . +....-..++..++.++.++.|..+|.++++.+-+++...
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~ 140 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGKQVWKFGNND 140 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECCCCCEeeeecCCC
Confidence 45677788889999999887766544433221 0 1000011122678889999999999999988765554322
Q ss_pred cc-----ee-EEEEecCCCEEEEEe---------CCCcEEEEeCCCCceeeeEecCCcc--------------------c
Q 047355 102 DY-----IR-SLAVHPTFPFVLTAS---------DDKLIKLWDWEKNWECTQTFEGHSH--------------------Y 146 (312)
Q Consensus 102 ~~-----i~-~~~~~~~~~~l~t~s---------~d~~v~iwd~~~~~~~~~~~~~~~~--------------------~ 146 (312)
.. +. +..+. +..++.++ .++.+.-+|..+.... ..+..... .
T Consensus 141 ~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~-W~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 217 (488)
T cd00216 141 QVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLL-WRFYTTEPDPNAFPTWGPDRQMWGPGGGT 217 (488)
T ss_pred CcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCcee-eEeeccCCCcCCCCCCCCCcceecCCCCC
Confidence 11 11 11222 13444443 3567778887665332 22221100 0
Q ss_pred eE-EEEeCCCCCCEEEEEeCCC------------------eEEEEEcCCCcceeeecc--ccc----ceeEEEEE--EcC
Q 047355 147 VM-QSAFNPKDLNTFASASLDG------------------TIQIWNMDSSAAKFTLDA--HEK----GINCIDYF--ITS 199 (312)
Q Consensus 147 v~-~~~~~~~~~~~~~s~s~dg------------------~v~iwd~~~~~~~~~~~~--~~~----~v~~~~~~--~~~ 199 (312)
+. ...+.+ ....++.++.++ .+.-+|.++++.+...+. |.. ......+. ..-
T Consensus 218 vw~~pa~d~-~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~ 296 (488)
T cd00216 218 SWASPTYDP-KTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPK 296 (488)
T ss_pred ccCCeeEeC-CCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEecccc
Confidence 00 112222 235677776665 799999999988776542 211 00000110 001
Q ss_pred Cc---eEEEEEeCCCeEEEEeCCCCeEEEEecccccCeEEEEEeCCCcEEEEE------------------eCCCcEEEE
Q 047355 200 DK---VYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITA------------------SEDGTILIW 258 (312)
Q Consensus 200 ~~---~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~------------------s~dg~v~iw 258 (312)
++ ..++.++.+|.+...|.++++.+-..... ...++.+| +. +..+ ..+|.+...
T Consensus 297 ~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~-~~-vyv~~~~~~~~~~~~~~~~~~~~~~G~l~Al 371 (488)
T cd00216 297 DGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP-GL-VYLGAFHIPLGLPPQKKKRCKKPGKGGLAAL 371 (488)
T ss_pred CCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC-ce-EEEccccccccCcccccCCCCCCCceEEEEE
Confidence 22 25778889999999999999877554321 11233334 22 2221 235678888
Q ss_pred eCCCcceeeecccCc--------cceEEEEEecCCCeEEEEecCCeEEE
Q 047355 259 NATTFRLQNTLSSGL--------ERVWSIGYKKGSNQVAFGCDNGTLIV 299 (312)
Q Consensus 259 d~~~~~~~~~~~~~~--------~~v~~~~~~~~~~~l~~~~~~g~i~v 299 (312)
|..+++.+.+..... ...+.-.....++.|.+++.+|.++.
T Consensus 372 D~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~a 420 (488)
T cd00216 372 DPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRA 420 (488)
T ss_pred eCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEE
Confidence 888877665544331 01100001124466667777777653
No 325
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.31 E-value=0.00099 Score=53.09 Aligned_cols=100 Identities=16% Similarity=0.125 Sum_probs=68.6
Q ss_pred CCCeEEEEecCCeEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEecCCCeEEEEEccCceeeeeecccccceeEE
Q 047355 28 TQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSL 107 (312)
Q Consensus 28 ~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~ 107 (312)
-|++++.|+..|.+.+.+..++.....+...+.--......+++..|.+|+.|++....|..+..++.+.+....--.+=
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP 141 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSP 141 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccc
Confidence 36778999999999999999887776666555433345567789999999999999999999988776655433322222
Q ss_pred EEecCCCEEEEEeCCCcEEE
Q 047355 108 AVHPTFPFVLTASDDKLIKL 127 (312)
Q Consensus 108 ~~~~~~~~l~t~s~d~~v~i 127 (312)
++.|....|..+...|.+.-
T Consensus 142 ~i~~g~~sly~a~t~G~vla 161 (354)
T KOG4649|consen 142 VIAPGDGSLYAAITAGAVLA 161 (354)
T ss_pred eecCCCceEEEEeccceEEE
Confidence 34443333444455555443
No 326
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.31 E-value=4e-05 Score=67.46 Aligned_cols=115 Identities=18% Similarity=0.231 Sum_probs=80.3
Q ss_pred cCcEEEEEEcCCCC-eEEEE----ecCCeE----EEEeccCCceeee--EE-ecCCceeEEEEeeCCcEEEEecCCCeEE
Q 047355 17 SDRVKSVDFHPTQP-WVLAS----LYSGTV----CIWNYHSQTTEKS--VK-VTDSPVRTAKFVAREHWIVCGSDDKFIR 84 (312)
Q Consensus 17 ~~~i~~~~~~~~~~-~l~~~----~~dg~v----~iw~~~~~~~~~~--~~-~~~~~v~~~~~~~~~~~l~~g~~dg~i~ 84 (312)
+....++.|+-..+ .+.+. +.+|.+ .+|+....+..+. .. ...+.+.+++++++++.++.|+.||+|+
T Consensus 205 E~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSii 284 (545)
T PF11768_consen 205 ENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSII 284 (545)
T ss_pred cCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEE
Confidence 34456778876443 34443 234443 3566654433221 11 2356788999999999999999999999
Q ss_pred EEEccCceeeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 047355 85 VFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKN 133 (312)
Q Consensus 85 iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~ 133 (312)
+||..+... .+....-..+.++|||++.++++|+.-|.+.+||+.-+
T Consensus 285 LyD~~~~~t--~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 285 LYDTTRGVT--LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EEEcCCCee--eeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 999876532 22233445688999999999999999999999997543
No 327
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.29 E-value=0.0015 Score=54.51 Aligned_cols=231 Identities=13% Similarity=0.168 Sum_probs=128.7
Q ss_pred cCCCCeEEEEecCCeEEEEecc-CCceeeeEEecCCceeEEEEeeCCcEEEEecCCCeEEEEEccCceeeeee-------
Q 047355 26 HPTQPWVLASLYSGTVCIWNYH-SQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEF------- 97 (312)
Q Consensus 26 ~~~~~~l~~~~~dg~v~iw~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~------- 97 (312)
...+++|+.|.++| +.+++.. .....+.. ...+|..+...++-+.+++=+ |+.+.++++.........
T Consensus 4 ~~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~ 79 (275)
T PF00780_consen 4 DSWGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPK 79 (275)
T ss_pred ccCCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccc
Confidence 34678999999988 8899883 33222222 223488888888777666554 499999998765433311
Q ss_pred -------cccccceeEEE--EecCCCEEEEEeCCCcEEEEeCCCC---c-eeeeEecCCccceEEEEeCCCCCCEEEEEe
Q 047355 98 -------EAHEDYIRSLA--VHPTFPFVLTASDDKLIKLWDWEKN---W-ECTQTFEGHSHYVMQSAFNPKDLNTFASAS 164 (312)
Q Consensus 98 -------~~h~~~i~~~~--~~~~~~~l~t~s~d~~v~iwd~~~~---~-~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s 164 (312)
......+...+ -...+...+.......+.+|.+... . ...+.+.- ...+..+.|.+ +.++.+.
T Consensus 80 ~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l-p~~~~~i~~~~---~~i~v~~ 155 (275)
T PF00780_consen 80 SRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISL-PDPPSSIAFLG---NKICVGT 155 (275)
T ss_pred cccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEc-CCCcEEEEEeC---CEEEEEe
Confidence 11122344444 1122333333444558999887653 1 23333332 24556667763 5677776
Q ss_pred CCCeEEEEEcCCCcceeeecccc---------cceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEE--EecccccC
Q 047355 165 LDGTIQIWNMDSSAAKFTLDAHE---------KGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQ--ILEGHTNN 233 (312)
Q Consensus 165 ~dg~v~iwd~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~--~~~~h~~~ 233 (312)
.++ ..+.|+.+......+.... .....+....-+++.+|++- |..-.+.|. .|+..+ .+. -...
T Consensus 156 ~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~--~~~g~fv~~-~G~~~r~~~i~-W~~~ 230 (275)
T PF00780_consen 156 SKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCY--DNIGVFVNK-NGEPSRKSTIQ-WSSA 230 (275)
T ss_pred CCc-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEe--cceEEEEcC-CCCcCcccEEE-cCCc
Confidence 554 7888988665443322111 11122222233445666543 333333444 333222 222 2345
Q ss_pred eEEEEEeCCCcEEEEEeCCCcEEEEeCCCcceeeecccC
Q 047355 234 VTAVCFHPELRIIITASEDGTILIWNATTFRLQNTLSSG 272 (312)
Q Consensus 234 i~~l~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~ 272 (312)
..++++.. ++|+.-+. +.|.||++.++++.+++...
T Consensus 231 p~~~~~~~--pyli~~~~-~~iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 231 PQSVAYSS--PYLIAFSS-NSIEVRSLETGELVQTIPLP 266 (275)
T ss_pred hhEEEEEC--CEEEEECC-CEEEEEECcCCcEEEEEECC
Confidence 66777744 56766665 55999999999998877644
No 328
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.29 E-value=0.002 Score=55.82 Aligned_cols=264 Identities=11% Similarity=0.127 Sum_probs=138.3
Q ss_pred cCCCCeEEEEe---------cCCeEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEecCCCeEEEEEccCceeeee
Q 047355 26 HPTQPWVLASL---------YSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKE 96 (312)
Q Consensus 26 ~~~~~~l~~~~---------~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~ 96 (312)
|||+++++... ..+...++|+.+++....... ...+....|+|+++.++-.. ++.|.+++..+....+.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l 78 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL 78 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence 58888877642 346788999988655443333 55788899999999988775 47899998766543322
Q ss_pred ec-c-------c---------ccceeEEEEecCCCEEEEEeC-CCcEEEEeCC---CCce---eeeEe------------
Q 047355 97 FE-A-------H---------EDYIRSLAVHPTFPFVLTASD-DKLIKLWDWE---KNWE---CTQTF------------ 140 (312)
Q Consensus 97 ~~-~-------h---------~~~i~~~~~~~~~~~l~t~s~-d~~v~iwd~~---~~~~---~~~~~------------ 140 (312)
.. + - -+.-..+-|+|++++|+.... +..|+.+.+. .... ....+
T Consensus 79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v 158 (353)
T PF00930_consen 79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRV 158 (353)
T ss_dssp ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EE
T ss_pred ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCce
Confidence 11 1 0 011246889999999886543 4555555421 1100 00000
Q ss_pred ---------------------cCCccceEEEEeCCCCCCEEEEE--eCCC---eEEEEEcCCCcceeeeccc-ccce---
Q 047355 141 ---------------------EGHSHYVMQSAFNPKDLNTFASA--SLDG---TIQIWNMDSSAAKFTLDAH-EKGI--- 190 (312)
Q Consensus 141 ---------------------~~~~~~v~~~~~~~~~~~~~~s~--s~dg---~v~iwd~~~~~~~~~~~~~-~~~v--- 190 (312)
.....++..+.|.+.+ ..|+.. ..+. .+.++|..++......... ...+
T Consensus 159 ~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~-~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~ 237 (353)
T PF00930_consen 159 SLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDG-KRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVY 237 (353)
T ss_dssp EEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETT-EEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSS
T ss_pred EEEEEECCCCcEEEeeeccccCCCccCcccceecCCC-cEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeee
Confidence 1123355666776643 323332 2222 3566677665443322211 1111
Q ss_pred eEEEEEEcCCceEEEEEeCCCe--EEEEeCCCCeEEEEecccccCeEE-EEEeCCCcEE-EEEeCCC----cEEEEeCCC
Q 047355 191 NCIDYFITSDKVYLITGSDDFT--VKVWDYETKTCVQILEGHTNNVTA-VCFHPELRII-ITASEDG----TILIWNATT 262 (312)
Q Consensus 191 ~~~~~~~~~~~~~l~sg~~dg~--i~vwd~~~~~~~~~~~~h~~~i~~-l~~~~~~~~l-~s~s~dg----~v~iwd~~~ 262 (312)
....+....+..++.....||. |.+++...+... .+....-.|+. +.++++++.| +++..+. .|..-++..
T Consensus 238 ~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~-~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~ 316 (353)
T PF00930_consen 238 DPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPR-QLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDS 316 (353)
T ss_dssp SEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEE-ESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTE
T ss_pred cccccccCCCCEEEEEEEcCCCcEEEEEccccccee-ccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCC
Confidence 1222211344555656667775 555566655533 44444556755 6778876544 4665532 344446651
Q ss_pred cceeeecccCccceEEEEEecCCCeEEEEec
Q 047355 263 FRLQNTLSSGLERVWSIGYKKGSNQVAFGCD 293 (312)
Q Consensus 263 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 293 (312)
......+.........+.|||++++++..+.
T Consensus 317 ~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 317 GGEPKCLTCEDGDHYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp TTEEEESSTTSSTTEEEEE-TTSSEEEEEEE
T ss_pred CCCeEeccCCCCCceEEEECCCCCEEEEEEc
Confidence 2333334433333378999999999885543
No 329
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.28 E-value=0.00012 Score=66.56 Aligned_cols=154 Identities=12% Similarity=0.149 Sum_probs=101.3
Q ss_pred hhcccCcEEEEEEcCC-------------CCeEEEEecCCeEEEEeccCCceeeeEEecCCceeEEEEeeC-----CcEE
Q 047355 13 FIQKSDRVKSVDFHPT-------------QPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAR-----EHWI 74 (312)
Q Consensus 13 ~~~~~~~i~~~~~~~~-------------~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l 74 (312)
|..|.+.|.-..+.-. |.++++|+.||+|.|-.+.+.+...++.. .-++.++++.|+ .+.+
T Consensus 54 ~GtH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df-~rpiksial~Pd~~~~~sk~f 132 (846)
T KOG2066|consen 54 LGTHRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTDDEITQYDF-KRPIKSIALHPDFSRQQSKQF 132 (846)
T ss_pred eccccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCCccceeEec-CCcceeEEeccchhhhhhhhe
Confidence 3346666666665544 99999999999999998877666555544 458899999987 5678
Q ss_pred EEecCCCeEEEEEccCce--eeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEecC-C-----ccc
Q 047355 75 VCGSDDKFIRVFDYNTMA--SVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEG-H-----SHY 146 (312)
Q Consensus 75 ~~g~~dg~i~iwd~~~~~--~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~-~-----~~~ 146 (312)
++|+.-| +.++.-+=.. ..-......++|.++.|. |+++|-++++| +++||+...... ..... + ..+
T Consensus 133 v~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l-~~i~~p~~~~R~e~f 207 (846)
T KOG2066|consen 133 VSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRL-TNIPPPSQSVRPELF 207 (846)
T ss_pred eecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEEEecccccee-eccCCCCCCCCcccC
Confidence 9999888 7777532111 111344557899999997 67788888766 899998765322 21211 1 122
Q ss_pred eEEEEeCCCCCCEEEEEeCCCeEEEEEcC
Q 047355 147 VMQSAFNPKDLNTFASASLDGTIQIWNMD 175 (312)
Q Consensus 147 v~~~~~~~~~~~~~~s~s~dg~v~iwd~~ 175 (312)
...+.|.+. ..++- +..-+|++..++
T Consensus 208 pphl~W~~~--~~LVI-GW~d~v~i~~I~ 233 (846)
T KOG2066|consen 208 PPHLHWQDE--DRLVI-GWGDSVKICSIK 233 (846)
T ss_pred CCceEecCC--CeEEE-ecCCeEEEEEEe
Confidence 334556543 33444 455678888887
No 330
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.26 E-value=0.002 Score=58.32 Aligned_cols=232 Identities=13% Similarity=0.106 Sum_probs=129.8
Q ss_pred CeEEEEecCCeEEEEeccCCceeeeEEecCCc-----ee-EEEEeeCCcEEEEec---------CCCeEEEEEccCceee
Q 047355 30 PWVLASLYSGTVCIWNYHSQTTEKSVKVTDSP-----VR-TAKFVAREHWIVCGS---------DDKFIRVFDYNTMASV 94 (312)
Q Consensus 30 ~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~-----v~-~~~~~~~~~~l~~g~---------~dg~i~iwd~~~~~~~ 94 (312)
..++.+..+|.|.-+|.++++.+-.+...... +. ...+. +..++.++ .+|.+..+|..+++..
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~ 188 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLL 188 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCcee
Confidence 67788888999999999888776555432210 11 11111 24455554 3678899999888765
Q ss_pred eeeccccc--------------------ce-eEEEEecCCCEEEEEeCCC------------------cEEEEeCCCCce
Q 047355 95 KEFEAHED--------------------YI-RSLAVHPTFPFVLTASDDK------------------LIKLWDWEKNWE 135 (312)
Q Consensus 95 ~~~~~h~~--------------------~i-~~~~~~~~~~~l~t~s~d~------------------~v~iwd~~~~~~ 135 (312)
-.++.... .| .+.++.+.+..++.++.++ .+.-.|..+...
T Consensus 189 W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~ 268 (488)
T cd00216 189 WRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKV 268 (488)
T ss_pred eEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCE
Confidence 44432111 01 1234445556677776555 577777766533
Q ss_pred eeeEec--CCc--------cceEEEEeCCCCC---CEEEEEeCCCeEEEEEcCCCcceeeecccccceeEEEEEEcCCce
Q 047355 136 CTQTFE--GHS--------HYVMQSAFNPKDL---NTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKV 202 (312)
Q Consensus 136 ~~~~~~--~~~--------~~v~~~~~~~~~~---~~~~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 202 (312)
. ..+. .+. .++..- ....++ ..++.++.+|.+...|.++++.+......... +. .++ +.
T Consensus 269 ~-W~~~~~~~~~~~~~~~s~p~~~~-~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~~~---~~--~~~-~~ 340 (488)
T cd00216 269 K-WFYQTTPHDLWDYDGPNQPSLAD-IKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVEQP---MA--YDP-GL 340 (488)
T ss_pred E-EEeeCCCCCCcccccCCCCeEEe-ccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeeccc---cc--cCC-ce
Confidence 2 2221 111 111100 000111 25778889999999999999887654321010 11 112 22
Q ss_pred EEEE-----------------EeCCCeEEEEeCCCCeEEEEeccc--c------cCeEEEEEeCCCcEEEEEeCCCcEEE
Q 047355 203 YLIT-----------------GSDDFTVKVWDYETKTCVQILEGH--T------NNVTAVCFHPELRIIITASEDGTILI 257 (312)
Q Consensus 203 ~l~s-----------------g~~dg~i~vwd~~~~~~~~~~~~h--~------~~i~~l~~~~~~~~l~s~s~dg~v~i 257 (312)
.++. ...+|.|...|..+++.+-..... . .+...-.....+..++.++.||.|+.
T Consensus 341 vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~a 420 (488)
T cd00216 341 VYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRA 420 (488)
T ss_pred EEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEE
Confidence 1111 123577888888888766544322 1 11111011124467889999999999
Q ss_pred EeCCCcceeeeccc
Q 047355 258 WNATTFRLQNTLSS 271 (312)
Q Consensus 258 wd~~~~~~~~~~~~ 271 (312)
+|..+++.+.+...
T Consensus 421 ld~~tG~~lW~~~~ 434 (488)
T cd00216 421 FDATTGKELWKFRT 434 (488)
T ss_pred EECCCCceeeEEEC
Confidence 99999988766553
No 331
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.21 E-value=0.0024 Score=53.62 Aligned_cols=246 Identities=14% Similarity=0.203 Sum_probs=134.0
Q ss_pred EEEEEEcCCCCeEEEEe----------cCCeEEEEeccCCceeeeEEecCC-c------eeEEEEeeCCcEEEEe--cCC
Q 047355 20 VKSVDFHPTQPWVLASL----------YSGTVCIWNYHSQTTEKSVKVTDS-P------VRTAKFVAREHWIVCG--SDD 80 (312)
Q Consensus 20 i~~~~~~~~~~~l~~~~----------~dg~v~iw~~~~~~~~~~~~~~~~-~------v~~~~~~~~~~~l~~g--~~d 80 (312)
.-.+..+||++.++++. ....|.+||..+......+..... . .....++.++++++.. +--
T Consensus 38 ~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa 117 (342)
T PF06433_consen 38 LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPA 117 (342)
T ss_dssp SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSS
T ss_pred CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCC
Confidence 34467799999888653 235689999988877766655543 1 1223455566665543 233
Q ss_pred CeEEEEEccCceeeeeecccccceeEEEEecCC-CEEEEEeCCCcEEEEeCCCCceeeeE----ecCCccceE-EEEeCC
Q 047355 81 KFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTF-PFVLTASDDKLIKLWDWEKNWECTQT----FEGHSHYVM-QSAFNP 154 (312)
Q Consensus 81 g~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~-~~l~t~s~d~~v~iwd~~~~~~~~~~----~~~~~~~v~-~~~~~~ 154 (312)
.+|-+-|+...+.+.++.... |..+.|.+ .-+.+-..||.+.-..+....+..++ |.....++. .-.+..
T Consensus 118 ~SVtVVDl~~~kvv~ei~~PG----C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~ 193 (342)
T PF06433_consen 118 TSVTVVDLAAKKVVGEIDTPG----CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSR 193 (342)
T ss_dssp EEEEEEETTTTEEEEEEEGTS----EEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEET
T ss_pred CeEEEEECCCCceeeeecCCC----EEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceEC
Confidence 456666666666555553321 12222322 34566677888888776533222221 222222221 122222
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCcceeee-----c------ccc-cceeEEEEEEcCCceEEEEEe--CCC-------eE
Q 047355 155 KDLNTFASASLDGTIQIWNMDSSAAKFTL-----D------AHE-KGINCIDYFITSDKVYLITGS--DDF-------TV 213 (312)
Q Consensus 155 ~~~~~~~s~s~dg~v~iwd~~~~~~~~~~-----~------~~~-~~v~~~~~~~~~~~~~l~sg~--~dg-------~i 213 (312)
....++-.+.+|.|+--|+........- . +.. .+-..+++. .+.+++++.-. .++ +|
T Consensus 194 -~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~-~~~~rlyvLMh~g~~gsHKdpgteV 271 (342)
T PF06433_consen 194 -DGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYH-AASGRLYVLMHQGGEGSHKDPGTEV 271 (342)
T ss_dssp -TTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEE-TTTTEEEEEEEE--TT-TTS-EEEE
T ss_pred -CCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeec-cccCeEEEEecCCCCCCccCCceEE
Confidence 2345666788999999888766533211 0 000 111223332 22333333221 122 48
Q ss_pred EEEeCCCCeEEEEecccccCeEEEEEeCCC-cEEEEE-eCCCcEEEEeCCCcceeeecccC
Q 047355 214 KVWDYETKTCVQILEGHTNNVTAVCFHPEL-RIIITA-SEDGTILIWNATTFRLQNTLSSG 272 (312)
Q Consensus 214 ~vwd~~~~~~~~~~~~h~~~i~~l~~~~~~-~~l~s~-s~dg~v~iwd~~~~~~~~~~~~~ 272 (312)
-++|+.+++.+..+.. ..++.+|..+.+. ++|++. ..++.+.+||..+++++.+++..
T Consensus 272 Wv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~l 331 (342)
T PF06433_consen 272 WVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQL 331 (342)
T ss_dssp EEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---
T ss_pred EEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhcc
Confidence 8889999999988874 3468899999754 466554 45899999999999998887643
No 332
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.15 E-value=0.00083 Score=59.46 Aligned_cols=185 Identities=17% Similarity=0.173 Sum_probs=97.2
Q ss_pred eecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeCCCeEEEEEcC
Q 047355 96 EFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMD 175 (312)
Q Consensus 96 ~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~ 175 (312)
.+....-....+.++|++++++.++ ||...++..... .. ..+ ..-....|.+ .+.+++-...++|.++.--
T Consensus 27 ~lg~~~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~-r~-k~~----G~g~~~vw~~--~n~yAv~~~~~~I~I~kn~ 97 (443)
T PF04053_consen 27 ELGSCEIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAW-RN-KAF----GSGLSFVWSS--RNRYAVLESSSTIKIYKNF 97 (443)
T ss_dssp EEEE-SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTT-EE-EEE----EE-SEEEE-T--SSEEEEE-TTS-EEEEETT
T ss_pred cCCCCCcCCeeEEECCCCCEEEEEc-CCEEEEEEccCC-cc-ccc----CceeEEEEec--CccEEEEECCCeEEEEEcC
Confidence 3334445678999999999998855 677888873322 11 111 1223456776 3668888888999996322
Q ss_pred CCcceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEecccccCeEEEEEeCCCcEEEEEeCCCcE
Q 047355 176 SSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITASEDGTI 255 (312)
Q Consensus 176 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~s~dg~v 255 (312)
.......+... ..+-.++ . |..|...+. +.|.+||+++++.+..+.-. +|..+-|++++.++|-.+.+ .+
T Consensus 98 ~~~~~k~i~~~---~~~~~If-~--G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i 167 (443)
T PF04053_consen 98 KNEVVKSIKLP---FSVEKIF-G--GNLLGVKSS-DFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SI 167 (443)
T ss_dssp EE-TT-----S---S-EEEEE----SSSEEEEET-TEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SE
T ss_pred ccccceEEcCC---cccceEE-c--CcEEEEECC-CCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eE
Confidence 22221122211 1122222 2 565655544 48999999999999888733 38999999999999888865 66
Q ss_pred EEEeCCCc-----------ceeeecccCccceEEEEEecCCCeEEEEecCCeEEEEec
Q 047355 256 LIWNATTF-----------RLQNTLSSGLERVWSIGYKKGSNQVAFGCDNGTLIVKIG 302 (312)
Q Consensus 256 ~iwd~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~v~~~ 302 (312)
.|.+.... .....+.+...+|.+..|..+ .++..+.+ ++...++
T Consensus 168 ~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkYl~~ 222 (443)
T PF04053_consen 168 YILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKYLVN 222 (443)
T ss_dssp EEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEEEET
T ss_pred EEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEEEEc
Confidence 77764322 022222222467778888766 66666665 6665443
No 333
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.12 E-value=0.0023 Score=58.07 Aligned_cols=264 Identities=13% Similarity=0.062 Sum_probs=141.1
Q ss_pred EEEEecCCeEEEEeccCCceeeeEEecC-------------Ccee-----------------EEEEe---eCCcEEEEec
Q 047355 32 VLASLYSGTVCIWNYHSQTTEKSVKVTD-------------SPVR-----------------TAKFV---AREHWIVCGS 78 (312)
Q Consensus 32 l~~~~~dg~v~iw~~~~~~~~~~~~~~~-------------~~v~-----------------~~~~~---~~~~~l~~g~ 78 (312)
+.+|+..|.++|+-+.+.+.+..+.... ..+. .+.+. -||++|+.-.
T Consensus 69 f~SgG~sG~~~v~G~PSmr~l~~ipvf~~~~~~G~G~~~esk~~l~~~~~~~~~~~gD~HHp~~s~t~g~ydGr~~find 148 (635)
T PRK02888 69 FWSGGHSGEVRILGLPSMRELMRIPVFNRDSATGWGITNESKKVLGEGARGGKYLNGDTHHPHMSFTDGTYDGRYLFIND 148 (635)
T ss_pred EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHhhccccCCcccCCCcCCCcccccCCccceeEEEEec
Confidence 4578889999999988877766442211 0010 01111 1466777655
Q ss_pred C-CCeEEEEEccCceeeeeecc-cccceeEEEEe--cCCCEEEEEe-------CCCcEEEEeCCCCceeeeEecCCcc-c
Q 047355 79 D-DKFIRVFDYNTMASVKEFEA-HEDYIRSLAVH--PTFPFVLTAS-------DDKLIKLWDWEKNWECTQTFEGHSH-Y 146 (312)
Q Consensus 79 ~-dg~i~iwd~~~~~~~~~~~~-h~~~i~~~~~~--~~~~~l~t~s-------~d~~v~iwd~~~~~~~~~~~~~~~~-~ 146 (312)
. +..|...+++.+++.+.++- ....+..+++. |.-.+++.++ .||.. +.+..........+...+. .
T Consensus 149 k~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~-l~~~~ey~~~vSvID~etmeV 227 (635)
T PRK02888 149 KANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKD-LDDPKKYRSLFTAVDAETMEV 227 (635)
T ss_pred CCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCE-eecccceeEEEEEEECccceE
Confidence 3 45666667777665554432 12234444443 4444444433 24431 2222111111112222221 2
Q ss_pred eEEEEeCCCCCCEEEEEeCCCeEEEEEc---CCCcceeeecccccceeEEEEE------EcCCceEEEEEeCCCeEEEEe
Q 047355 147 VMQSAFNPKDLNTFASASLDGTIQIWNM---DSSAAKFTLDAHEKGINCIDYF------ITSDKVYLITGSDDFTVKVWD 217 (312)
Q Consensus 147 v~~~~~~~~~~~~~~s~s~dg~v~iwd~---~~~~~~~~~~~~~~~v~~~~~~------~~~~~~~l~sg~~dg~i~vwd 217 (312)
+..+... .. ...+..+.||..-.... ..+..+..+...+.. ..+.+. ..++|++... .++.|.+.|
T Consensus 228 ~~qV~Vd-gn-pd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d-~~vvfni~~iea~vkdGK~~~V--~gn~V~VID 302 (635)
T PRK02888 228 AWQVMVD-GN-LDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERD-WVVVFNIARIEEAVKAGKFKTI--GGSKVPVVD 302 (635)
T ss_pred EEEEEeC-CC-cccceECCCCCEEEEeccCcccCcceeeeccccCc-eEEEEchHHHHHhhhCCCEEEE--CCCEEEEEE
Confidence 2233332 22 23455566776444432 222222222221111 111111 1235555444 357899999
Q ss_pred CCC-----CeEEEEecccccCeEEEEEeCCCcEEEEEe-CCCcEEEEeCCCcce------------eeecccCccceEEE
Q 047355 218 YET-----KTCVQILEGHTNNVTAVCFHPELRIIITAS-EDGTILIWNATTFRL------------QNTLSSGLERVWSI 279 (312)
Q Consensus 218 ~~~-----~~~~~~~~~h~~~i~~l~~~~~~~~l~s~s-~dg~v~iwd~~~~~~------------~~~~~~~~~~v~~~ 279 (312)
.++ .+....+. -....+.++++||++++++++ .+.+|.+.|+++.+. ..+.+- .......
T Consensus 303 ~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHT 380 (635)
T PRK02888 303 GRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHT 380 (635)
T ss_pred CCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-CCCcceE
Confidence 987 34455444 455678999999999876555 488999999987552 222222 2345688
Q ss_pred EEecCCCeEEEEecCCeEEEEecc
Q 047355 280 GYKKGSNQVAFGCDNGTLIVKIGN 303 (312)
Q Consensus 280 ~~~~~~~~l~~~~~~g~i~v~~~~ 303 (312)
+|.++|+...+-.-|..+..|...
T Consensus 381 aFDg~G~aytslf~dsqv~kwn~~ 404 (635)
T PRK02888 381 AFDGRGNAYTTLFLDSQIVKWNIE 404 (635)
T ss_pred EECCCCCEEEeEeecceeEEEehH
Confidence 999999998888889988887644
No 334
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.09 E-value=0.0011 Score=54.98 Aligned_cols=161 Identities=11% Similarity=0.116 Sum_probs=97.1
Q ss_pred EEEcCCCCeEEEEec-----CCeEEEEecc-CCceeeeEEecCCceeEEEEeeCCcEEEEecC-----------------
Q 047355 23 VDFHPTQPWVLASLY-----SGTVCIWNYH-SQTTEKSVKVTDSPVRTAKFVAREHWIVCGSD----------------- 79 (312)
Q Consensus 23 ~~~~~~~~~l~~~~~-----dg~v~iw~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~----------------- 79 (312)
-.|+|||++|++.-. .|.|-|||.. ..+.+..+..+.-.=..+.+.++++.|+.|..
T Consensus 56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~t 135 (305)
T PF07433_consen 56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDT 135 (305)
T ss_pred EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhh
Confidence 579999999998743 4889999998 44444444433322234567888876665531
Q ss_pred -CCeEEEEEccCceeeee--e--cccccceeEEEEecCCCEEEEEeCCCc-------EEEEeCCCCceee----eEecCC
Q 047355 80 -DKFIRVFDYNTMASVKE--F--EAHEDYIRSLAVHPTFPFVLTASDDKL-------IKLWDWEKNWECT----QTFEGH 143 (312)
Q Consensus 80 -dg~i~iwd~~~~~~~~~--~--~~h~~~i~~~~~~~~~~~l~t~s~d~~-------v~iwd~~~~~~~~----~~~~~~ 143 (312)
+.++...|..+++.+.+ + ..|.-.|..+++.+++..++..-..|. +-+++........ .....-
T Consensus 136 M~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l 215 (305)
T PF07433_consen 136 MQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRL 215 (305)
T ss_pred cCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhh
Confidence 12344445555655544 3 336778999999988875554433332 1112111100000 001223
Q ss_pred ccceEEEEeCCCCCCEEEEEeCCCeEEEEEcCCCcceeee
Q 047355 144 SHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTL 183 (312)
Q Consensus 144 ~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~ 183 (312)
..++-++++++......+|+-..+.+.+||..++..+...
T Consensus 216 ~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~ 255 (305)
T PF07433_consen 216 NGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSV 255 (305)
T ss_pred CCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecc
Confidence 4688899999865445566677889999999988766543
No 335
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.09 E-value=1e-06 Score=77.67 Aligned_cols=198 Identities=17% Similarity=0.271 Sum_probs=126.6
Q ss_pred cEEEEEEc--CCCCeEEEEecCCeEEEEeccCCcee--eeEEecCCceeEEEEeeC-CcEEEEec----CCCeEEEEEcc
Q 047355 19 RVKSVDFH--PTQPWVLASLYSGTVCIWNYHSQTTE--KSVKVTDSPVRTAKFVAR-EHWIVCGS----DDKFIRVFDYN 89 (312)
Q Consensus 19 ~i~~~~~~--~~~~~l~~~~~dg~v~iw~~~~~~~~--~~~~~~~~~v~~~~~~~~-~~~l~~g~----~dg~i~iwd~~ 89 (312)
.+.++++. .+...+++|..+|.|-+-.+...... .....+..+.++++|++- ..+|++|- .|..+.+||+.
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~ 137 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN 137 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence 56666664 34567889999999999876432211 223345567888888874 34555543 46789999998
Q ss_pred Cce--eee--eecc-cccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEe
Q 047355 90 TMA--SVK--EFEA-HEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASAS 164 (312)
Q Consensus 90 ~~~--~~~--~~~~-h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s 164 (312)
+.- +.. .+.. ......+++|..+.+++++|.....++++|++...... ..-.+..+..+...|-.++++++-.
T Consensus 138 s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~--~svnTk~vqG~tVdp~~~nY~cs~~ 215 (783)
T KOG1008|consen 138 SLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSV--SSVNTKYVQGITVDPFSPNYFCSNS 215 (783)
T ss_pred cccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhh--hhhhhhhcccceecCCCCCceeccc
Confidence 762 111 1112 33445688888888889999999999999987432211 1223345556666776667787766
Q ss_pred CCCeEEEEE-cCCCcc-eeeeccc----ccceeEEEEEEcCCceEEEEEeCCCeEEEEeCC
Q 047355 165 LDGTIQIWN-MDSSAA-KFTLDAH----EKGINCIDYFITSDKVYLITGSDDFTVKVWDYE 219 (312)
Q Consensus 165 ~dg~v~iwd-~~~~~~-~~~~~~~----~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~ 219 (312)
||.|-+|| .++-+. ..++... ...+..++|.+...|...+..-..++|+.+|+.
T Consensus 216 -dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 216 -DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred -cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 99999999 443322 2222111 123778888887766544444466789999974
No 336
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=98.05 E-value=1.7e-05 Score=43.50 Aligned_cols=39 Identities=41% Similarity=0.779 Sum_probs=34.3
Q ss_pred CeEEEEecccccCeEEEEEeCCCcEEEEEeCCCcEEEEe
Q 047355 221 KTCVQILEGHTNNVTAVCFHPELRIIITASEDGTILIWN 259 (312)
Q Consensus 221 ~~~~~~~~~h~~~i~~l~~~~~~~~l~s~s~dg~v~iwd 259 (312)
.++...+..|...|.+++|++++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345666778899999999999999999999999999996
No 337
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.05 E-value=0.00015 Score=66.49 Aligned_cols=230 Identities=11% Similarity=0.189 Sum_probs=133.1
Q ss_pred cEEEEEEcCCCCeEEEEecCCeEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEecCCCeEEEEEccCceeeee--
Q 047355 19 RVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKE-- 96 (312)
Q Consensus 19 ~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~-- 96 (312)
.+.+++|||..-.|+.|-+-|.+.+|.....+......-|..++..+.|+++|..++++.+-|.+.+|..+....++.
T Consensus 61 hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~ 140 (1416)
T KOG3617|consen 61 HATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSN 140 (1416)
T ss_pred ehhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccch
Confidence 567899999998899999999999999887766655666888999999999999999999999999998774332222
Q ss_pred ecccc--ccee--EEEEecCCC------EEEEEeCCCcEE-EEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeC
Q 047355 97 FEAHE--DYIR--SLAVHPTFP------FVLTASDDKLIK-LWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASL 165 (312)
Q Consensus 97 ~~~h~--~~i~--~~~~~~~~~------~l~t~s~d~~v~-iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~ 165 (312)
+-.|+ +.++ +...++++. ..+..+++..+- .++++..... ... .. .=.| ++..|+.++.
T Consensus 141 ~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~-rs~-------~k-sgv~-~g~~F~~~~~ 210 (1416)
T KOG3617|consen 141 IMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAE-RSD-------EK-SGVP-KGTEFLFAGK 210 (1416)
T ss_pred hhhhHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhh-ccc-------cc-cCCC-CCcEEEEEcC
Confidence 12232 2233 333445421 244455555444 5555422110 010 11 1133 4467888888
Q ss_pred CCeEEEEEcCCCcc-eee--------ecccccceeEEEE-------EEcCCceE---------EEEEeCCCeEEEEeCCC
Q 047355 166 DGTIQIWNMDSSAA-KFT--------LDAHEKGINCIDY-------FITSDKVY---------LITGSDDFTVKVWDYET 220 (312)
Q Consensus 166 dg~v~iwd~~~~~~-~~~--------~~~~~~~v~~~~~-------~~~~~~~~---------l~sg~~dg~i~vwd~~~ 220 (312)
+|+|+..|-..... +.. +.+....+.++-- ...+.|.. --.|+..|.|.+=.. +
T Consensus 211 ~GtVyyvdq~g~~~~V~k~dS~vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEs-s 289 (1416)
T KOG3617|consen 211 SGTVYYVDQNGRQRTVHKLDSEVQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSES-S 289 (1416)
T ss_pred CceEEEEcCCCcEEEEEEccchHHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCccccccc-c
Confidence 99998888543211 111 1112223332211 01111100 001222222222111 0
Q ss_pred CeEEEE--e-cccccCeEEEEEeCCCcEEEEEeCCCcEEEEe
Q 047355 221 KTCVQI--L-EGHTNNVTAVCFHPELRIIITASEDGTILIWN 259 (312)
Q Consensus 221 ~~~~~~--~-~~h~~~i~~l~~~~~~~~l~s~s~dg~v~iwd 259 (312)
|-+.+. + ....+.++|+++...+..|+.|.+.|.+.+|-
T Consensus 290 GvLr~~eKyg~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~ 331 (1416)
T KOG3617|consen 290 GVLRKSEKYGLELGEGILCMCYGEKEIRLWAGTKEGNVTIWL 331 (1416)
T ss_pred ccccCCcchhhhcCCceEEEEEeccceEEEecccCCcEEEee
Confidence 100000 0 11245799999999999999999999999995
No 338
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.03 E-value=0.0026 Score=57.48 Aligned_cols=137 Identities=14% Similarity=0.170 Sum_probs=95.9
Q ss_pred cCcEEEEEEcCCCCeEEEEecCCeEEEEeccCCceeee-EEecCCceeEEEEeeCCcEEEEecCCCeEEEEEccCceee-
Q 047355 17 SDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKS-VKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASV- 94 (312)
Q Consensus 17 ~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~- 94 (312)
..+|+=-+++..+++++.|+.-|.+.+|+-..+..... .....+.+.....++++.+++.|+..|.|.++.+....+.
T Consensus 33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~ 112 (726)
T KOG3621|consen 33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRD 112 (726)
T ss_pred cceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCc
Confidence 45777778888999999999999999999765544322 2224445556667778888889999999999987653211
Q ss_pred eee-----cccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCC---ceeeeEecCCccceEEEEeC
Q 047355 95 KEF-----EAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKN---WECTQTFEGHSHYVMQSAFN 153 (312)
Q Consensus 95 ~~~-----~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~---~~~~~~~~~~~~~v~~~~~~ 153 (312)
..+ +.|...|++++|++++..+.+|...|.|..-.+... ....+.+..-...|.++.+.
T Consensus 113 ~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~ 179 (726)
T KOG3621|consen 113 LDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL 179 (726)
T ss_pred ceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence 111 347788999999999999999999999988765541 01112233334556666654
No 339
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=98.02 E-value=0.00088 Score=46.46 Aligned_cols=92 Identities=26% Similarity=0.436 Sum_probs=63.6
Q ss_pred eEEEEEeCCCeEEEEeCCCCeEEEEecccccCeEEEEEeCCCcEEEEEeCCCcEEEEeCCCcceeeecccCccceEEEEE
Q 047355 202 VYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITASEDGTILIWNATTFRLQNTLSSGLERVWSIGY 281 (312)
Q Consensus 202 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~ 281 (312)
.-|+.|+.|..|++|+-+ ..+..+. ..+.|++++-... ..++.+..+|+|-+|+-.. ++ ...++. .++.++.+
T Consensus 16 ~eLlvGs~D~~IRvf~~~--e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~-Rl-WRiKSK-~~~~~~~~ 88 (111)
T PF14783_consen 16 NELLVGSDDFEIRVFKGD--EIVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ-RL-WRIKSK-NQVTSMAF 88 (111)
T ss_pred ceEEEecCCcEEEEEeCC--cEEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeCcc-ee-eeeccC-CCeEEEEE
Confidence 568999999999999754 4455554 3556888887776 5699999999999998532 22 233332 33555554
Q ss_pred ec-C--C-CeEEEEecCCeEEEE
Q 047355 282 KK-G--S-NQVAFGCDNGTLIVK 300 (312)
Q Consensus 282 ~~-~--~-~~l~~~~~~g~i~v~ 300 (312)
.. + | ..|++|..+|.+-+|
T Consensus 89 ~D~~gdG~~eLI~GwsnGkve~R 111 (111)
T PF14783_consen 89 YDINGDGVPELIVGWSNGKVEVR 111 (111)
T ss_pred EcCCCCCceEEEEEecCCeEEeC
Confidence 32 2 2 369999999998653
No 340
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.99 E-value=4.7e-05 Score=67.04 Aligned_cols=73 Identities=12% Similarity=0.169 Sum_probs=60.7
Q ss_pred ccCcEEEEEEcCCCCeEEEEecCCeEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEecCCCeEEEEEccC
Q 047355 16 KSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNT 90 (312)
Q Consensus 16 ~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~ 90 (312)
....|.+.+++|+.+.|+.|+.||+|.+||...+... .....-....++|+|+|..+++|+..|.+.+||..-
T Consensus 258 L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 258 LPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred cCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 4568999999999999999999999999998765332 223334567789999999999999999999999754
No 341
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.92 E-value=2.4e-05 Score=60.85 Aligned_cols=143 Identities=14% Similarity=0.139 Sum_probs=86.3
Q ss_pred EEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeCCCeEEEEEcCCCcceee-ecccccceeEE
Q 047355 115 FVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFT-LDAHEKGINCI 193 (312)
Q Consensus 115 ~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~-~~~~~~~v~~~ 193 (312)
.+...+.|+.|+=++++......+.-..+.. ..-.+.....++.|+.+|.|.+|+........- .......+.+.
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e----~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~ 107 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERFIDE----GQRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLG 107 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhhhhc----ceeecccCceEEeecccceEEEecCCccchHHHhhhcccccceec
Confidence 3555677788877776543211111111111 111223346789999999999998863211111 11111222222
Q ss_pred EEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEecccc-cCeEEEEEeCCCcEEEEE--eCCCcEEEEeCCC
Q 047355 194 DYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHT-NNVTAVCFHPELRIIITA--SEDGTILIWNATT 262 (312)
Q Consensus 194 ~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~-~~i~~l~~~~~~~~l~s~--s~dg~v~iwd~~~ 262 (312)
+....++.+..+++.||.|+.|++.-.+.+.....|+ .++..+..+..++.++.. |.|..++.|++..
T Consensus 108 -Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 108 -IPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred -cccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 1123345578899999999999998888777777777 566666666666777777 7888888888764
No 342
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.89 E-value=5e-06 Score=73.43 Aligned_cols=189 Identities=17% Similarity=0.298 Sum_probs=119.2
Q ss_pred cceeEEEEec--CCCEEEEEeCCCcEEEEeCCCCcee-eeEecCCccceEEEEeCCCCCCEEEEEe----CCCeEEEEEc
Q 047355 102 DYIRSLAVHP--TFPFVLTASDDKLIKLWDWEKNWEC-TQTFEGHSHYVMQSAFNPKDLNTFASAS----LDGTIQIWNM 174 (312)
Q Consensus 102 ~~i~~~~~~~--~~~~l~t~s~d~~v~iwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~s~s----~dg~v~iwd~ 174 (312)
..+.|++..- +...++.|..+|.|-+-..+..... .....++..+...++|++.+.+.|++|- .|..+.|||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 3456665533 3356778999999999887654333 2234567778889999998878888874 3557999999
Q ss_pred CCCc--ce--eeecc-cccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEecccccCeEEEEEeC-CCcEEEE
Q 047355 175 DSSA--AK--FTLDA-HEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHP-ELRIIIT 248 (312)
Q Consensus 175 ~~~~--~~--~~~~~-~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~i~~l~~~~-~~~~l~s 248 (312)
.+.- +. ..+.+ ...+..+++|. .+.+.+.+|.....+.++|++.... ....-.+..+..+..+| .+.++++
T Consensus 137 ~s~ltvPke~~~fs~~~l~gqns~cwl--rd~klvlaGm~sr~~~ifdlRqs~~-~~~svnTk~vqG~tVdp~~~nY~cs 213 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSSTLDGQNSVCWL--RDTKLVLAGMTSRSVHIFDLRQSLD-SVSSVNTKYVQGITVDPFSPNYFCS 213 (783)
T ss_pred ccccCCCccccccccccccCccccccc--cCcchhhcccccchhhhhhhhhhhh-hhhhhhhhhcccceecCCCCCceec
Confidence 8752 11 11222 22344555543 6778899999999999999974321 11111234567778888 6677766
Q ss_pred EeCCCcEEEEeC-CCcc-eeeecccC----ccceEEEEEecCCCe-EEEEecC
Q 047355 249 ASEDGTILIWNA-TTFR-LQNTLSSG----LERVWSIGYKKGSNQ-VAFGCDN 294 (312)
Q Consensus 249 ~s~dg~v~iwd~-~~~~-~~~~~~~~----~~~v~~~~~~~~~~~-l~~~~~~ 294 (312)
-. ||.|.+||. ...+ +...+... ..++..++|.|-... |++...|
T Consensus 214 ~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~Rd 265 (783)
T KOG1008|consen 214 NS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRD 265 (783)
T ss_pred cc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccC
Confidence 65 999999994 3322 11111111 235999999986443 4444443
No 343
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.89 E-value=0.0079 Score=48.15 Aligned_cols=142 Identities=13% Similarity=0.087 Sum_probs=86.7
Q ss_pred CCeEEEEecCCeEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEecCCCeEEEEEccCceeeeeecccccceeE-E
Q 047355 29 QPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRS-L 107 (312)
Q Consensus 29 ~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~-~ 107 (312)
.++++.|+-.+.+.--|..++...-... ....+.+-+.. -+++++.|+..|.+++.+.++++....+..- +.|.+ .
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~-~~vk~~a 99 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVIL-ETVKVRA 99 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeeh-hhhccce
Confidence 4567778888888888887776543221 12233333333 3667999999999999999998665554332 22332 2
Q ss_pred EEecCCCEEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeCCCeEEEEEcC
Q 047355 108 AVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMD 175 (312)
Q Consensus 108 ~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~ 175 (312)
...+++..+..|+.|++...-|.++. .++.+.+.......+-..+|.+ ..+..+...|.+.--..+
T Consensus 100 ~~d~~~glIycgshd~~~yalD~~~~-~cVykskcgG~~f~sP~i~~g~-~sly~a~t~G~vlavt~~ 165 (354)
T KOG4649|consen 100 QCDFDGGLIYCGSHDGNFYALDPKTY-GCVYKSKCGGGTFVSPVIAPGD-GSLYAAITAGAVLAVTKN 165 (354)
T ss_pred EEcCCCceEEEecCCCcEEEeccccc-ceEEecccCCceeccceecCCC-ceEEEEeccceEEEEccC
Confidence 34577888899999999999998765 3444433332222333345533 345555556655544443
No 344
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.76 E-value=9.1e-05 Score=40.41 Aligned_cols=38 Identities=37% Similarity=0.608 Sum_probs=33.2
Q ss_pred eeeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEe
Q 047355 92 ASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWD 129 (312)
Q Consensus 92 ~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd 129 (312)
.....+..|...|.++.+++.+.++++++.|+.+++||
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 34566678888999999999999999999999999996
No 345
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.76 E-value=0.023 Score=49.31 Aligned_cols=230 Identities=8% Similarity=0.100 Sum_probs=113.9
Q ss_pred cCcEEEEEEcCCCCeEEEEecCCeEEEEeccCCceeeeEEec-----------------CCceeEEEEeeCCcEEEEecC
Q 047355 17 SDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVT-----------------DSPVRTAKFVAREHWIVCGSD 79 (312)
Q Consensus 17 ~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~-----------------~~~v~~~~~~~~~~~l~~g~~ 79 (312)
...+....|+|+|+.++... ++.|.+++.......+..... -..-..+.|+|++++|+....
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~ 120 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF 120 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence 46788999999999888764 678999987666433222111 112356778999988776543
Q ss_pred -CCeEEEEE-----------------------------------ccCceeee-e-e---cccccceeEEEEecCCC-EEE
Q 047355 80 -DKFIRVFD-----------------------------------YNTMASVK-E-F---EAHEDYIRSLAVHPTFP-FVL 117 (312)
Q Consensus 80 -dg~i~iwd-----------------------------------~~~~~~~~-~-~---~~h~~~i~~~~~~~~~~-~l~ 117 (312)
+..|..+. +.+++... . . ..-...+..+.|.+++. +++
T Consensus 121 d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~ 200 (353)
T PF00930_consen 121 DEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWV 200 (353)
T ss_dssp E-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEE
T ss_pred CCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEE
Confidence 23333332 22221100 0 0 01123466777777776 322
Q ss_pred -EEeCCCc---EEEEeCCCCceeeeEecCCccc---eEEEEeC-CCCCCEEEEEeCCCeE--EEEEcCCCcceeeecccc
Q 047355 118 -TASDDKL---IKLWDWEKNWECTQTFEGHSHY---VMQSAFN-PKDLNTFASASLDGTI--QIWNMDSSAAKFTLDAHE 187 (312)
Q Consensus 118 -t~s~d~~---v~iwd~~~~~~~~~~~~~~~~~---v~~~~~~-~~~~~~~~s~s~dg~v--~iwd~~~~~~~~~~~~~~ 187 (312)
..+++.. +.++|..+........+..... .....+. +.+..++.....||-- .+++...... ..+....
T Consensus 201 ~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~-~~lT~G~ 279 (353)
T PF00930_consen 201 QWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKP-RQLTSGD 279 (353)
T ss_dssp EEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEE-EESS-SS
T ss_pred EEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccce-eccccCc
Confidence 3344332 3344544322111111111111 1123333 5555566666677754 4455554443 3444444
Q ss_pred cceeEEEEEEcCCceEEEEEeCCC----eEEEEeCC-CCeEEEEecccccCeEEEEEeCCCcEEEEE
Q 047355 188 KGINCIDYFITSDKVYLITGSDDF----TVKVWDYE-TKTCVQILEGHTNNVTAVCFHPELRIIITA 249 (312)
Q Consensus 188 ~~v~~~~~~~~~~~~~l~sg~~dg----~i~vwd~~-~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~ 249 (312)
-.|..+...-...+..++++..+. .|..-++. .+. ...+......-..+.|+|++++++-.
T Consensus 280 ~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~-~~~LT~~~~~~~~~~~Spdg~y~v~~ 345 (353)
T PF00930_consen 280 WEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGE-PKCLTCEDGDHYSASFSPDGKYYVDT 345 (353)
T ss_dssp S-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTE-EEESSTTSSTTEEEEE-TTSSEEEEE
T ss_pred eeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCC-eEeccCCCCCceEEEECCCCCEEEEE
Confidence 556554433333455556666533 56666676 444 44454333333699999999887643
No 346
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.75 E-value=0.024 Score=49.60 Aligned_cols=230 Identities=10% Similarity=0.131 Sum_probs=119.1
Q ss_pred ceeEEEEeeCCcEEEEecCCCeEEEEEccCceeeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCC--------C
Q 047355 61 PVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWE--------K 132 (312)
Q Consensus 61 ~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~--------~ 132 (312)
.|..+.|.++...|++|...|.|.+|.+...+... ..-..+-..+.+.+- ...++.-++-|+. .
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~~~------~~~~~~~~l~di~~r~~~~~~~ 74 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFRRF------SLNNSPGKLTDISDRAPPSLKE 74 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S--------GGGSS-SEEE-GGG--TT-SE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCcccccc------cccCCCcceEEehhhCCccccc
Confidence 47788899998899999999999999876543221 000000011111000 0111112222321 1
Q ss_pred CceeeeEecCCccceEEEEeCCCCCCEEEEEeCCCeEEEEEcCCCcceeeecc--------cccceeEEEEEE---cCCc
Q 047355 133 NWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDA--------HEKGINCIDYFI---TSDK 201 (312)
Q Consensus 133 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~--------~~~~v~~~~~~~---~~~~ 201 (312)
+..+...+......|..+..+ +-.+++.|..+|++.+.|+|....++.... ....+.++.|.. ..|+
T Consensus 75 gf~P~~l~~~~~g~vtal~~S--~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ 152 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNS--DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDG 152 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE---BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSS
T ss_pred ccCchhheeccCCcEeEEecC--CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCc
Confidence 223344455567788888876 567999999999999999987765554211 122456666543 2333
Q ss_pred ---eEEEEEeCCCeEEEEeCC--C-Ce----EEEEecccccCeEEEE-EeCCC--------------------cEEEEEe
Q 047355 202 ---VYLITGSDDFTVKVWDYE--T-KT----CVQILEGHTNNVTAVC-FHPEL--------------------RIIITAS 250 (312)
Q Consensus 202 ---~~l~sg~~dg~i~vwd~~--~-~~----~~~~~~~h~~~i~~l~-~~~~~--------------------~~l~s~s 250 (312)
..++.|...|.+.+|.+. . +. .......+.++|..+. |+.+. +-++...
T Consensus 153 ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv 232 (395)
T PF08596_consen 153 YSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV 232 (395)
T ss_dssp SEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE
T ss_pred ccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE
Confidence 678899999999999763 1 21 1222224566666665 33221 1244445
Q ss_pred CCCcEEEEeCCCcceeeecccCccceEEEEE-----ecCCCeEEEEecCCeEEEE
Q 047355 251 EDGTILIWNATTFRLQNTLSSGLERVWSIGY-----KKGSNQVAFGCDNGTLIVK 300 (312)
Q Consensus 251 ~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~-----~~~~~~l~~~~~~g~i~v~ 300 (312)
.+..+|++...+.+..++..........+.+ ...+..|+.-..+|.+++-
T Consensus 233 Se~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~ 287 (395)
T PF08596_consen 233 SESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIY 287 (395)
T ss_dssp -SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEE
T ss_pred cccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEE
Confidence 5788999999887776655533233334444 3467788888889988753
No 347
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.74 E-value=0.017 Score=52.69 Aligned_cols=188 Identities=12% Similarity=0.026 Sum_probs=104.4
Q ss_pred EcCCCCeEEE-EecCCeEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEecCC----CeEEEEEccCceeeeeecc
Q 047355 25 FHPTQPWVLA-SLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDD----KFIRVFDYNTMASVKEFEA 99 (312)
Q Consensus 25 ~~~~~~~l~~-~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d----g~i~iwd~~~~~~~~~~~~ 99 (312)
++|||+.+.. .-..+.+.+.|.++.+...++.... .-..+.+.++++++++.+.+ .++..-+.........+.-
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni 278 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNI 278 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEch
Confidence 4556655433 2334667777877766555554433 33566788899998887632 2222222222111111100
Q ss_pred cccceeEEEEecCCCEEEEEeCCCcEEEEeCCC----CceeeeEecCCccceEEEEeCCCCCCEEEEEeCCCeEEEEEcC
Q 047355 100 HEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEK----NWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMD 175 (312)
Q Consensus 100 h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~ 175 (312)
. .+. ++.+++++... .++.|.+.|..+ .......+. -......+.++|.+...++++..+.+|.++|+.
T Consensus 279 ~--~ie--a~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~ 351 (635)
T PRK02888 279 A--RIE--EAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVR 351 (635)
T ss_pred H--HHH--HhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEECh
Confidence 0 000 23356776554 357899999876 222332222 223345678899765566777779999999998
Q ss_pred CCccee--------eecc-cccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCC
Q 047355 176 SSAAKF--------TLDA-HEKGINCIDYFITSDKVYLITGSDDFTVKVWDYET 220 (312)
Q Consensus 176 ~~~~~~--------~~~~-~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~ 220 (312)
+.+..+ .+.+ -+-+...+...++++|....+--.|..|..|++..
T Consensus 352 k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 352 KLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred hhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 754311 0100 00111112223467787788888899999999865
No 348
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.67 E-value=0.028 Score=48.03 Aligned_cols=211 Identities=14% Similarity=0.193 Sum_probs=116.0
Q ss_pred eEEEEeccCCceeeeEEecCC-ceeEEEE---ee----CCcEEEEecC----------CCeEEEEEccCc----eeeeee
Q 047355 40 TVCIWNYHSQTTEKSVKVTDS-PVRTAKF---VA----REHWIVCGSD----------DKFIRVFDYNTM----ASVKEF 97 (312)
Q Consensus 40 ~v~iw~~~~~~~~~~~~~~~~-~v~~~~~---~~----~~~~l~~g~~----------dg~i~iwd~~~~----~~~~~~ 97 (312)
.|++.|..+.+.+..+..... .+.+++. .. ...+|+.|+. .|.|.++++... ..++.+
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 567777766666665554432 2333332 22 2456666642 288999999873 122222
Q ss_pred --cccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCc-eeeeEecCCccceEEEEeCCCCCCEEEEEeCCCeEEEEEc
Q 047355 98 --EAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNW-ECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNM 174 (312)
Q Consensus 98 --~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~ 174 (312)
....++|++++.. .+ .++.+. .+.+.+|++.... -....+......+.++... .++++.|.....+.++..
T Consensus 83 ~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~---~~~I~vgD~~~sv~~~~~ 156 (321)
T PF03178_consen 83 HSTEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF---KNYILVGDAMKSVSLLRY 156 (321)
T ss_dssp EEEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE---TTEEEEEESSSSEEEEEE
T ss_pred EEEeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc---ccEEEEEEcccCEEEEEE
Confidence 3446789998876 33 344343 4789999987664 2222222222355555544 358888888888888765
Q ss_pred CCCcc-eeee--cccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCC-------C--eEEEEeccc-ccCeEEE---E
Q 047355 175 DSSAA-KFTL--DAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYET-------K--TCVQILEGH-TNNVTAV---C 238 (312)
Q Consensus 175 ~~~~~-~~~~--~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~-------~--~~~~~~~~h-~~~i~~l---~ 238 (312)
+.... ...+ ......+.++.+.... ..++.+..+|.+.++.... + +....-.-| .+.|+++ +
T Consensus 157 ~~~~~~l~~va~d~~~~~v~~~~~l~d~--~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~ 234 (321)
T PF03178_consen 157 DEENNKLILVARDYQPRWVTAAEFLVDE--DTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGS 234 (321)
T ss_dssp ETTTE-EEEEEEESS-BEEEEEEEE-SS--SEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--
T ss_pred EccCCEEEEEEecCCCccEEEEEEecCC--cEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEE
Confidence 54322 2222 2223445666554333 4788899999999987542 1 233222223 4567777 5
Q ss_pred EeCC--C------cEEEEEeCCCcEEEE
Q 047355 239 FHPE--L------RIIITASEDGTILIW 258 (312)
Q Consensus 239 ~~~~--~------~~l~s~s~dg~v~iw 258 (312)
+.|. . +.++.++.+|.|.+.
T Consensus 235 l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 235 LIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred eeecCCCCcccccceEEEEecCCEEEEE
Confidence 4451 1 248888889988844
No 349
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.66 E-value=0.0083 Score=41.70 Aligned_cols=103 Identities=19% Similarity=0.250 Sum_probs=62.3
Q ss_pred eeEEEEec---CC-CEEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeCCCeEEEEEcCCCcc
Q 047355 104 IRSLAVHP---TF-PFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAA 179 (312)
Q Consensus 104 i~~~~~~~---~~-~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~ 179 (312)
|++|++.. ++ +.|+.|+.|..||+|+-. +.+..+... ..+..+.... ...|+.+..+|+|-+|+-.. .
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~---e~~~Ei~e~-~~v~~L~~~~--~~~F~Y~l~NGTVGvY~~~~--R 73 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD---EIVAEITET-DKVTSLCSLG--GGRFAYALANGTVGVYDRSQ--R 73 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC---cEEEEEecc-cceEEEEEcC--CCEEEEEecCCEEEEEeCcc--e
Confidence 55666543 22 568999999999999833 344444433 4455555544 36899999999999997632 2
Q ss_pred eeeecccccceeEEEE-EEcCCc-eEEEEEeCCCeEEE
Q 047355 180 KFTLDAHEKGINCIDY-FITSDK-VYLITGSDDFTVKV 215 (312)
Q Consensus 180 ~~~~~~~~~~v~~~~~-~~~~~~-~~l~sg~~dg~i~v 215 (312)
......... +.++.+ ....+| .-|++|-.+|.|.+
T Consensus 74 lWRiKSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 74 LWRIKSKNQ-VTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred eeeeccCCC-eEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 333332222 444443 223333 24778888887653
No 350
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.65 E-value=0.03 Score=47.87 Aligned_cols=214 Identities=18% Similarity=0.257 Sum_probs=115.9
Q ss_pred CeEEEEEccCceeeeeeccc-ccceeEEE---EecC----CCEEEEEeC----------CCcEEEEeCCCC----ceeee
Q 047355 81 KFIRVFDYNTMASVKEFEAH-EDYIRSLA---VHPT----FPFVLTASD----------DKLIKLWDWEKN----WECTQ 138 (312)
Q Consensus 81 g~i~iwd~~~~~~~~~~~~h-~~~i~~~~---~~~~----~~~l~t~s~----------d~~v~iwd~~~~----~~~~~ 138 (312)
..|++.|..+.+.+..++-. ...+.++. +..+ ..+++.|.. .|.+.++++... .+...
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 35777777766655544322 12344433 3322 456666542 288999998763 11111
Q ss_pred -EecCCccceEEEEeCCCCCCEEEEEeCCCeEEEEEcCCCcceeeeccccc--ceeEEEEEEcCCceEEEEEeCCCeEEE
Q 047355 139 -TFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEK--GINCIDYFITSDKVYLITGSDDFTVKV 215 (312)
Q Consensus 139 -~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~l~sg~~dg~i~v 215 (312)
........|.++... + ..++++ .++.|.+|++...+.......+.. .+.++. .. +.+++.|..-..+.+
T Consensus 82 i~~~~~~g~V~ai~~~--~-~~lv~~-~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~--~~--~~~I~vgD~~~sv~~ 153 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF--N-GRLVVA-VGNKLYVYDLDNSKTLLKKAFYDSPFYITSLS--VF--KNYILVGDAMKSVSL 153 (321)
T ss_dssp EEEEEESS-EEEEEEE--T-TEEEEE-ETTEEEEEEEETTSSEEEEEEE-BSSSEEEEE--EE--TTEEEEEESSSSEEE
T ss_pred EEEEeecCcceEhhhh--C-CEEEEe-ecCEEEEEEccCcccchhhheecceEEEEEEe--cc--ccEEEEEEcccCEEE
Confidence 112234567766654 2 334333 468999999988772222222222 344443 22 347888887777777
Q ss_pred EeCCC-CeEEEEec--ccccCeEEEEEeCCCcEEEEEeCCCcEEEEeCCC-------c--ceeeecccC-ccceEEE---
Q 047355 216 WDYET-KTCVQILE--GHTNNVTAVCFHPELRIIITASEDGTILIWNATT-------F--RLQNTLSSG-LERVWSI--- 279 (312)
Q Consensus 216 wd~~~-~~~~~~~~--~h~~~i~~l~~~~~~~~l~s~s~dg~v~iwd~~~-------~--~~~~~~~~~-~~~v~~~--- 279 (312)
+.... ...+..+. .....++++.|-+++..++.+..+|.+.++..+. . ++.....-| .+.|.++
T Consensus 154 ~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~ 233 (321)
T PF03178_consen 154 LRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRG 233 (321)
T ss_dssp EEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE-
T ss_pred EEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEE
Confidence 64332 33232222 2245689999986667899999999999997752 1 233323333 2446666
Q ss_pred EEec--CCC------eEEEEecCCeEEEEec
Q 047355 280 GYKK--GSN------QVAFGCDNGTLIVKIG 302 (312)
Q Consensus 280 ~~~~--~~~------~l~~~~~~g~i~v~~~ 302 (312)
.+.| .+. .++.++.+|.|.+-.+
T Consensus 234 ~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l~p 264 (321)
T PF03178_consen 234 SLIPRSGSSESPNRPQILYGTVDGSIGVLIP 264 (321)
T ss_dssp -SS--SSSS-TTEEEEEEEEETTS-EEEEEE
T ss_pred EeeecCCCCcccccceEEEEecCCEEEEEEe
Confidence 4444 222 4889999999886555
No 351
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.65 E-value=0.0061 Score=57.34 Aligned_cols=142 Identities=17% Similarity=0.165 Sum_probs=91.7
Q ss_pred CcEEEE-ecCCCeEEEEEccCceeeeeecccccc-eeEEEEec-----CCCEEEEEeCCCcEEEEeCCCCce-eee----
Q 047355 71 EHWIVC-GSDDKFIRVFDYNTMASVKEFEAHEDY-IRSLAVHP-----TFPFVLTASDDKLIKLWDWEKNWE-CTQ---- 138 (312)
Q Consensus 71 ~~~l~~-g~~dg~i~iwd~~~~~~~~~~~~h~~~-i~~~~~~~-----~~~~l~t~s~d~~v~iwd~~~~~~-~~~---- 138 (312)
..+|+. ......|+-.|++.++.+.++..|... |..++-.. +......|-.+..+..||.+-... ...
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k 572 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK 572 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc
Confidence 344443 345678999999999999999888754 66665321 122345677788899999875421 111
Q ss_pred EecCCccceEEEEeCCCCCCEEEEEeCCCeEEEEEcCCCcceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeC
Q 047355 139 TFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDY 218 (312)
Q Consensus 139 ~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~ 218 (312)
.+. ......+++-. ....+|+|+.+|.||+||-........+++-..+|..++ .+.||+|+++-+ +..|.++++
T Consensus 573 ~Y~-~~~~Fs~~aTt--~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iD--vt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 573 QYS-SKNNFSCFATT--EDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGID--VTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred ccc-cCCCceEEEec--CCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEE--ecCCCcEEEEee-cceEEEEEE
Confidence 111 11223333332 457899999999999999554444445566667788777 578999887654 456777764
No 352
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.62 E-value=0.0003 Score=63.21 Aligned_cols=107 Identities=16% Similarity=0.176 Sum_probs=80.7
Q ss_pred cCCceEEEEEeCCCeEEEEeCCCCeEEEEe-cccccCeEEEEEeCCCcEEEEEeCCCcEEEEeCCCcce-----e-eecc
Q 047355 198 TSDKVYLITGSDDFTVKVWDYETKTCVQIL-EGHTNNVTAVCFHPELRIIITASEDGTILIWNATTFRL-----Q-NTLS 270 (312)
Q Consensus 198 ~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~-~~h~~~i~~l~~~~~~~~l~s~s~dg~v~iwd~~~~~~-----~-~~~~ 270 (312)
+..+.+++.|+.-|.+++|+-..++....- .+-.+.+..+..|++..++|.|+..|.|.++.++.... . .--+
T Consensus 42 dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~ 121 (726)
T KOG3621|consen 42 DATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDK 121 (726)
T ss_pred ecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccc
Confidence 346789999999999999986655443322 22334566778899999999999999999998765221 1 1122
Q ss_pred cCccceEEEEEecCCCeEEEEecCCeEEEEeccC
Q 047355 271 SGLERVWSIGYKKGSNQVAFGCDNGTLIVKIGNS 304 (312)
Q Consensus 271 ~~~~~v~~~~~~~~~~~l~~~~~~g~i~v~~~~~ 304 (312)
.|..+|.++.|++++..+-+|...|+|..-..++
T Consensus 122 ~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 122 SHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred cCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 3578899999999999999999999998766654
No 353
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.61 E-value=0.041 Score=48.24 Aligned_cols=218 Identities=16% Similarity=0.099 Sum_probs=136.1
Q ss_pred EEEEEcCCCCeEEE-EecCCeEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEecC---CCeEEEEEccCceeeee
Q 047355 21 KSVDFHPTQPWVLA-SLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSD---DKFIRVFDYNTMASVKE 96 (312)
Q Consensus 21 ~~~~~~~~~~~l~~-~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~---dg~i~iwd~~~~~~~~~ 96 (312)
..++++++++.++. ...++.|.+.|....+......... .-..+.+.++++.++.+.. ++++.+.|..+.+..+.
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~ 155 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT 155 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE
Confidence 46788888886554 4556999999977776666555444 3456788999888777655 68888999888877766
Q ss_pred ecccccceeEEEEecCCCEEEEE-eCCCcEEEEeCCCCceeeeE---ecCCccceEEEEeCCCCCCEEEEEeCC--CeEE
Q 047355 97 FEAHEDYIRSLAVHPTFPFVLTA-SDDKLIKLWDWEKNWECTQT---FEGHSHYVMQSAFNPKDLNTFASASLD--GTIQ 170 (312)
Q Consensus 97 ~~~h~~~i~~~~~~~~~~~l~t~-s~d~~v~iwd~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~~s~s~d--g~v~ 170 (312)
...-..+ ..+++.|+++.+... ..++.+.+.|.......... ...-...-..+.+.|.+....++...+ +.+.
T Consensus 156 ~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~ 234 (381)
T COG3391 156 IPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVL 234 (381)
T ss_pred EecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEE
Confidence 5444445 889999999966544 47889999996543211000 011111223456676543344444433 5888
Q ss_pred EEEcCCCcceee-ecccccceeEEEEEEcCCceEEEEE-eCCCeEEEEeCCCCeEEEEeccccc---CeEEEEEeCC
Q 047355 171 IWNMDSSAAKFT-LDAHEKGINCIDYFITSDKVYLITG-SDDFTVKVWDYETKTCVQILEGHTN---NVTAVCFHPE 242 (312)
Q Consensus 171 iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~sg-~~dg~i~vwd~~~~~~~~~~~~h~~---~i~~l~~~~~ 242 (312)
..|..+...... ......... .....|++.++... +..+.+.+.|..+............ .+..+++.+.
T Consensus 235 ~id~~~~~v~~~~~~~~~~~~~--~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 309 (381)
T COG3391 235 KIDTATGNVTATDLPVGSGAPR--GVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPL 309 (381)
T ss_pred EEeCCCceEEEeccccccCCCC--ceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceee
Confidence 888877655443 111111111 12346777776666 3458899999888777666543332 3556666553
No 354
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.59 E-value=0.00013 Score=56.92 Aligned_cols=141 Identities=13% Similarity=0.166 Sum_probs=74.4
Q ss_pred EEEecCCCeEEEEEccCceee-eeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEe
Q 047355 74 IVCGSDDKFIRVFDYNTMASV-KEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAF 152 (312)
Q Consensus 74 l~~g~~dg~i~iwd~~~~~~~-~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~ 152 (312)
+..-+.||.|+-+++...+.- +...-|... ..+...+..++.|+.+|.|.+|.++........+......+.....
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip 109 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIP 109 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcc---eeecccCceEEeecccceEEEecCCccchHHHhhhcccccceeccc
Confidence 445566777777766543211 111111111 1222334568889999999999986322211112222222222222
Q ss_pred CCCCCCEEEEEeCCCeEEEEEcCCCcceeeecccc-cceeEEEEEEcCCceEEEEE--eCCCeEEEEeCC
Q 047355 153 NPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHE-KGINCIDYFITSDKVYLITG--SDDFTVKVWDYE 219 (312)
Q Consensus 153 ~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~sg--~~dg~i~vwd~~ 219 (312)
.-.+..+..+++.||.||.|+....+..-....|. .+..... ....+.+++.. |.|..++.|+++
T Consensus 110 ~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~i--vv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 110 NGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELI--VVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred cccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeE--EecCCceEEeeccccchhhhhcchh
Confidence 22233588899999999999998776665555555 2222221 12223444444 555666666654
No 355
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.55 E-value=0.0032 Score=59.16 Aligned_cols=142 Identities=14% Similarity=0.220 Sum_probs=87.7
Q ss_pred CEEEEE-eCCCcEEEEeCCCCceeeeEecCCccc-eEEEEeCC----CCCCEEEEEeCCCeEEEEEcCCCcc-eeeeccc
Q 047355 114 PFVLTA-SDDKLIKLWDWEKNWECTQTFEGHSHY-VMQSAFNP----KDLNTFASASLDGTIQIWNMDSSAA-KFTLDAH 186 (312)
Q Consensus 114 ~~l~t~-s~d~~v~iwd~~~~~~~~~~~~~~~~~-v~~~~~~~----~~~~~~~s~s~dg~v~iwd~~~~~~-~~~~~~~ 186 (312)
++|+.- .....+.-.|++.+ ..+..+..+... |....-.. .....-+.|-.+..+..||.|-... +..-+.|
T Consensus 494 ~mil~~~~~~~~ly~mDLe~G-KVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k 572 (794)
T PF08553_consen 494 NMILLDPNNPNKLYKMDLERG-KVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK 572 (794)
T ss_pred ceEeecCCCCCceEEEecCCC-cEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc
Confidence 444433 34567888888766 445555555433 44333211 1233456677788899999986432 1111122
Q ss_pred ----ccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEecccccCeEEEEEeCCCcEEEEEeCCCcEEEEeC
Q 047355 187 ----EKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITASEDGTILIWNA 260 (312)
Q Consensus 187 ----~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~s~dg~v~iwd~ 260 (312)
.....|++ .+.+ .+||.|+.+|.|++||--..+.-..+.+-..+|.+|+.+.||+|+++.+. ..+.+++.
T Consensus 573 ~Y~~~~~Fs~~a--Tt~~-G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t 646 (794)
T PF08553_consen 573 QYSSKNNFSCFA--TTED-GYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCK-TYLLLIDT 646 (794)
T ss_pred ccccCCCceEEE--ecCC-ceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeec-ceEEEEEE
Confidence 12234443 3444 47999999999999995332223345677899999999999999887774 46667764
No 356
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=0.00058 Score=60.72 Aligned_cols=75 Identities=15% Similarity=0.174 Sum_probs=65.2
Q ss_pred CceeEEEEeeCCcEEEEecCCCeEEEEEccCceeeeeeccccccee-EEEEecCCCEEEEEeCCCcEEEEeCCCCce
Q 047355 60 SPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIR-SLAVHPTFPFVLTASDDKLIKLWDWEKNWE 135 (312)
Q Consensus 60 ~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~-~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~ 135 (312)
..+..+.|+|.-..||.+..+|.|.+..+. .+.+-.+.-|..+++ +++|.|+|++++.|-.||+|++-|+..+..
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCc
Confidence 357788999999999999999999999888 566667776777777 999999999999999999999999887643
No 357
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=0.00034 Score=62.12 Aligned_cols=69 Identities=23% Similarity=0.381 Sum_probs=62.1
Q ss_pred cCeEEEEEeCCCcEEEEEeCCCcEEEEeCCCcceeeecccCccceE-EEEEecCCCeEEEEecCCeEEEEe
Q 047355 232 NNVTAVCFHPELRIIITASEDGTILIWNATTFRLQNTLSSGLERVW-SIGYKKGSNQVAFGCDNGTLIVKI 301 (312)
Q Consensus 232 ~~i~~l~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~~g~i~v~~ 301 (312)
..|.-+.|+|.-.++|.+..+|.|.+..++ ++.+.++..+...+. +++|.|||+.||+|-.||+|++.=
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~D 90 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHD 90 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEE
Confidence 458889999999999999999999999987 888888887877777 999999999999999999998753
No 358
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.51 E-value=0.019 Score=50.73 Aligned_cols=192 Identities=14% Similarity=0.130 Sum_probs=103.0
Q ss_pred eeeEEecCCceeEEEEeeCCcEEEEe---cCC-CeEEEEEccCceeeeeecccccceeEEEEecCCCEEE-EEeCCCcEE
Q 047355 52 EKSVKVTDSPVRTAKFVAREHWIVCG---SDD-KFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVL-TASDDKLIK 126 (312)
Q Consensus 52 ~~~~~~~~~~v~~~~~~~~~~~l~~g---~~d-g~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~-t~s~d~~v~ 126 (312)
.+.+......+..-.|++++..++-- ... ..+.+++++++....... -.+.-..-+|+|+++.|+ +...||...
T Consensus 185 ~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~ 263 (425)
T COG0823 185 QQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPD 263 (425)
T ss_pred eeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCcc
Confidence 33444444456667788887765432 122 468899998876443332 112223457899998876 556678766
Q ss_pred EE--eCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeCCCe--EEEEEcCCCcceeeecccccceeEEEEEEcCCce
Q 047355 127 LW--DWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGT--IQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKV 202 (312)
Q Consensus 127 iw--d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~--v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 202 (312)
+| |+.... ...+......-..-.|+|.+...+++....|. |.+++.+..... .+......-... .+++||.
T Consensus 264 iy~~dl~~~~--~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~-riT~~~~~~~~p--~~SpdG~ 338 (425)
T COG0823 264 IYLMDLDGKN--LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVT-RLTFSGGGNSNP--VWSPDGD 338 (425)
T ss_pred EEEEcCCCCc--ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCcee-EeeccCCCCcCc--cCCCCCC
Confidence 65 544332 22232222222345688876666666666675 455555554432 222111111122 3578888
Q ss_pred EEEEEeCC-Ce--EEEEeCCCCeEEEEecccccCeEEEEEeCCCcEEEEEe
Q 047355 203 YLITGSDD-FT--VKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITAS 250 (312)
Q Consensus 203 ~l~sg~~d-g~--i~vwd~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~s 250 (312)
+++..+.. |. |.+.|..++...+.+. +......-+|.|+++.+...+
T Consensus 339 ~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~s 388 (425)
T COG0823 339 KIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMFSS 388 (425)
T ss_pred EEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEEec
Confidence 88876643 43 6666665554344333 232333456667776655444
No 359
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.50 E-value=0.01 Score=52.46 Aligned_cols=206 Identities=18% Similarity=0.156 Sum_probs=111.9
Q ss_pred CeEEEEEccCceeeeeecccccceeEEEEecCCCEEEEE---eCC-CcEEEEeCCCCcee-eeEecCCccceEEEEeCCC
Q 047355 81 KFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTA---SDD-KLIKLWDWEKNWEC-TQTFEGHSHYVMQSAFNPK 155 (312)
Q Consensus 81 g~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~t~---s~d-~~v~iwd~~~~~~~-~~~~~~~~~~v~~~~~~~~ 155 (312)
..+.+-|.+ +...+.+..-...+..=.|+|++..++.. ... ..+.++|++..... ...+.++. ....|+|.
T Consensus 173 ~~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~---~~P~fspD 248 (425)
T COG0823 173 YELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNN---GAPAFSPD 248 (425)
T ss_pred ceEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCcc---CCccCCCC
Confidence 344444544 34444554445566777888888765543 222 35888888765332 22233332 33568887
Q ss_pred CCCEEEEEeCCCe--EEEEEcCCCcceeeecccccceeEEEEEEcCCceEEEEEeC-CC--eEEEEeCCCCeEEEEeccc
Q 047355 156 DLNTFASASLDGT--IQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSD-DF--TVKVWDYETKTCVQILEGH 230 (312)
Q Consensus 156 ~~~~~~s~s~dg~--v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~-dg--~i~vwd~~~~~~~~~~~~h 230 (312)
+..++++...||. |.++|+.+..... +. +..++.. .-..+|||.+++-.+. .| .|.+++.+..........-
T Consensus 249 G~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt-~~~gi~~-~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~ 325 (425)
T COG0823 249 GSKLAFSSSRDGSPDIYLMDLDGKNLPR-LT-NGFGINT-SPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSG 325 (425)
T ss_pred CCEEEEEECCCCCccEEEEcCCCCccee-cc-cCCcccc-CccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccC
Confidence 7667777777886 5556776655322 22 2222222 2345788888776554 33 4667777766543322222
Q ss_pred ccCeEEEEEeCCCcEEEEEeCC-Cc--EEEEeCCCcceeeecccCccceEEEEEecCCCeEEEEecCC
Q 047355 231 TNNVTAVCFHPELRIIITASED-GT--ILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGCDNG 295 (312)
Q Consensus 231 ~~~i~~l~~~~~~~~l~s~s~d-g~--v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g 295 (312)
.... .-.++|||++++..+.. |. |.+.|+.+......+. .......-.|.++|..|+..+..+
T Consensus 326 ~~~~-~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~s~~~ 391 (425)
T COG0823 326 GGNS-NPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMFSSGQG 391 (425)
T ss_pred CCCc-CccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEEeccCC
Confidence 2222 67889999998877743 44 5555554443222221 111222335566666666555544
No 360
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.45 E-value=0.044 Score=44.66 Aligned_cols=169 Identities=9% Similarity=0.158 Sum_probs=99.2
Q ss_pred hhhhhcccCcEEEEEEcCCCCeEEE-EecCCeEEEEeccCCceeeeEEecC-CceeEEEEeeCCcEEEEecCCCeEEEEE
Q 047355 10 EKEFIQKSDRVKSVDFHPTQPWVLA-SLYSGTVCIWNYHSQTTEKSVKVTD-SPVRTAKFVAREHWIVCGSDDKFIRVFD 87 (312)
Q Consensus 10 ~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~v~iw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~g~~dg~i~iwd 87 (312)
.+.+.+..+.+..|+|+|+...|++ ....+.|...+.+ ++.++.+.... .-...+++..++.++++--.++.+.+++
T Consensus 14 ~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~ 92 (248)
T PF06977_consen 14 AKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFT 92 (248)
T ss_dssp EEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEE
T ss_pred eeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEE
Confidence 3556677778999999998765554 5667778777764 56666665543 4577888988887777666689999998
Q ss_pred ccCce------eeeee-----cccccceeEEEEecCCCEEEEEeCCCcEEEEeCCC---Cceee-eE------ecCCccc
Q 047355 88 YNTMA------SVKEF-----EAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEK---NWECT-QT------FEGHSHY 146 (312)
Q Consensus 88 ~~~~~------~~~~~-----~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~---~~~~~-~~------~~~~~~~ 146 (312)
+.... ..+.+ ..+...+-.++|.|.+..++.+-...-.++|.++. ..... .. .......
T Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 172 (248)
T PF06977_consen 93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRD 172 (248)
T ss_dssp E----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS-
T ss_pred EeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecc
Confidence 73321 11222 13445688999999877777776666677777643 11110 00 0112234
Q ss_pred eEEEEeCCCCCCEEEEEeCCCeEEEEEcCCCcce
Q 047355 147 VMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAK 180 (312)
Q Consensus 147 v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~ 180 (312)
...+.++|..+++++-......|..+|. .++.+
T Consensus 173 ~S~l~~~p~t~~lliLS~es~~l~~~d~-~G~~~ 205 (248)
T PF06977_consen 173 LSGLSYDPRTGHLLILSDESRLLLELDR-QGRVV 205 (248)
T ss_dssp --EEEEETTTTEEEEEETTTTEEEEE-T-T--EE
T ss_pred ccceEEcCCCCeEEEEECCCCeEEEECC-CCCEE
Confidence 5678899988778888888889999994 44443
No 361
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.40 E-value=0.063 Score=45.34 Aligned_cols=206 Identities=9% Similarity=0.061 Sum_probs=109.6
Q ss_pred EEEEEcCCCCeEEEEec--CCeEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEecCCCeEEEEEccCc-eeee--
Q 047355 21 KSVDFHPTQPWVLASLY--SGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTM-ASVK-- 95 (312)
Q Consensus 21 ~~~~~~~~~~~l~~~~~--dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~-~~~~-- 95 (312)
+.+++++|+++++..-. --+|.|-|++.++....+.... ....|-.....+.+-+.||.+....++.. +..+
T Consensus 98 ~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG---C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~ 174 (342)
T PF06433_consen 98 NMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG---CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKS 174 (342)
T ss_dssp GGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS---EEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEE
T ss_pred cceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC---EEEEEecCCCceEEEecCCceEEEEECCCCCEeEee
Confidence 34567888888776543 4578888888777655443322 22334333456778889999999988743 2221
Q ss_pred --eeccccccee-EEEEecCCCEEEEEeCCCcEEEEeCCCCce-eeeEecCCc----------cceEEEEeCCCCCCEEE
Q 047355 96 --EFEAHEDYIR-SLAVHPTFPFVLTASDDKLIKLWDWEKNWE-CTQTFEGHS----------HYVMQSAFNPKDLNTFA 161 (312)
Q Consensus 96 --~~~~h~~~i~-~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~-~~~~~~~~~----------~~v~~~~~~~~~~~~~~ 161 (312)
.+..-.+++. .-++...+..++.-+.+|.|+--|+..... ....+.--. .-...+++++....+++
T Consensus 175 t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyv 254 (342)
T PF06433_consen 175 TKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYV 254 (342)
T ss_dssp EEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEE
T ss_pred ccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEE
Confidence 1111222222 223334445566678888888877654321 111111000 01122445543322222
Q ss_pred EE--eCCC-------eEEEEEcCCCcceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEeccc
Q 047355 162 SA--SLDG-------TIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGH 230 (312)
Q Consensus 162 s~--s~dg-------~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h 230 (312)
.- +.++ .|.++|+.+.+.+..+... ..+.++.........+++....++.+.+||..+++.++.+..-
T Consensus 255 LMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~-~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~l 331 (342)
T PF06433_consen 255 LMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE-HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQL 331 (342)
T ss_dssp EEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE-EEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---
T ss_pred EecCCCCCCccCCceEEEEEECCCCeEEEEEeCC-CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhcc
Confidence 21 1122 4788888888888777542 3455666544333344444456899999999999998887643
No 362
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.40 E-value=0.00077 Score=63.55 Aligned_cols=97 Identities=15% Similarity=0.260 Sum_probs=74.3
Q ss_pred ceEEEEEeCCCeEEEEeCCCCe-EEEEecccccCeEEEEEeCCCcEEEEEeCCCcEEEEeCCCcceeeecccCccc---e
Q 047355 201 KVYLITGSDDFTVKVWDYETKT-CVQILEGHTNNVTAVCFHPELRIIITASEDGTILIWNATTFRLQNTLSSGLER---V 276 (312)
Q Consensus 201 ~~~l~sg~~dg~i~vwd~~~~~-~~~~~~~h~~~i~~l~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~---v 276 (312)
+.+++.|+..|.|-..|+...- +...-..-.++|++++|+.+|+.++.|-.+|.|.+||..+.+..+.+..+..+ |
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~v 178 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGV 178 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceE
Confidence 4578999999999999986531 11111123568999999999999999999999999999998877777766544 5
Q ss_pred EEEEEecCCCeEEEEecCCeE
Q 047355 277 WSIGYKKGSNQVAFGCDNGTL 297 (312)
Q Consensus 277 ~~~~~~~~~~~l~~~~~~g~i 297 (312)
.-+.+..++..+.++.+.|.+
T Consensus 179 i~v~~t~~nS~llt~D~~Gsf 199 (1206)
T KOG2079|consen 179 IFVGRTSQNSKLLTSDTGGSF 199 (1206)
T ss_pred EEEEEeCCCcEEEEccCCCce
Confidence 666677777778888888853
No 363
>PHA02713 hypothetical protein; Provisional
Probab=97.35 E-value=0.055 Score=49.93 Aligned_cols=62 Identities=8% Similarity=0.101 Sum_probs=37.2
Q ss_pred CceEEEEEeCC------CeEEEEeCCC-CeE--EEEecccccCeEEEEEeCCCcEEEEEeCCC--cEEEEeCCCc
Q 047355 200 DKVYLITGSDD------FTVKVWDYET-KTC--VQILEGHTNNVTAVCFHPELRIIITASEDG--TILIWNATTF 263 (312)
Q Consensus 200 ~~~~l~sg~~d------g~i~vwd~~~-~~~--~~~~~~h~~~i~~l~~~~~~~~l~s~s~dg--~v~iwd~~~~ 263 (312)
++.+.+.|+.+ ..+..||.++ .+- +..+.........+.+ ++++.+.|+.|+ .+-.||..+.
T Consensus 463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~ 535 (557)
T PHA02713 463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTY 535 (557)
T ss_pred CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCcccc
Confidence 45556666654 2467899876 433 3334333333333333 678899999888 6677776653
No 364
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.34 E-value=0.0073 Score=57.34 Aligned_cols=101 Identities=14% Similarity=0.217 Sum_probs=75.3
Q ss_pred CCCeEEEEecCCeEEEEeccCC-ceeeeEEecCCceeEEEEeeCCcEEEEecCCCeEEEEEccCceeeeeecccccceeE
Q 047355 28 TQPWVLASLYSGTVCIWNYHSQ-TTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRS 106 (312)
Q Consensus 28 ~~~~l~~~~~dg~v~iw~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~ 106 (312)
.+..++.|+..|.+-..|+... .+...-....++|++++|+.+|..++.|-.+|.|.+||....+..+.+..|..+.+.
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~ 177 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG 177 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence 4567888888898888877543 111112234579999999999999999999999999999998888888777766555
Q ss_pred E---EEecCCCEEEEEeCCCcEEEEeC
Q 047355 107 L---AVHPTFPFVLTASDDKLIKLWDW 130 (312)
Q Consensus 107 ~---~~~~~~~~l~t~s~d~~v~iwd~ 130 (312)
+ .+..++..++++...|. +|..
T Consensus 178 vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 178 VIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 4 34456667788877776 6653
No 365
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.32 E-value=0.092 Score=48.52 Aligned_cols=223 Identities=13% Similarity=0.131 Sum_probs=111.1
Q ss_pred CCeEEEEecCC------eEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEecCC------CeEEEEEccCceeeee
Q 047355 29 QPWVLASLYSG------TVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDD------KFIRVFDYNTMASVKE 96 (312)
Q Consensus 29 ~~~l~~~~~dg------~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d------g~i~iwd~~~~~~~~~ 96 (312)
+..++.||.++ .+..+|..+..................-.-++...++|+.| .++..||..+.+ ...
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~-W~~ 363 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQ-WTP 363 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCc-eec
Confidence 45666777773 57778876654333222222222222333455677788888 356677766543 222
Q ss_pred ---ecccccceeEEEEecCCCEEEEEeCCCc-----EEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeCCC-
Q 047355 97 ---FEAHEDYIRSLAVHPTFPFVLTASDDKL-----IKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDG- 167 (312)
Q Consensus 97 ---~~~h~~~i~~~~~~~~~~~l~t~s~d~~-----v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg- 167 (312)
+....... +++. -.+.+.+.||.||. +..||..++.... ................++.+.+.|+.++
T Consensus 364 ~a~M~~~R~~~-~v~~-l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~--va~m~~~r~~~gv~~~~g~iYi~GG~~~~ 439 (571)
T KOG4441|consen 364 VAPMNTKRSDF-GVAV-LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTP--VAPMLTRRSGHGVAVLGGKLYIIGGGDGS 439 (571)
T ss_pred cCCccCccccc-eeEE-ECCEEEEEeccccccccccEEEecCCCCcccc--cCCCCcceeeeEEEEECCEEEEEcCcCCC
Confidence 11111111 1111 24666778888864 5556654432111 1111111122222222446677777555
Q ss_pred -----eEEEEEcCCCcceee--ecccccceeEEEEEEcCCceEEEEEeCCCe-----EEEEeCCCCeEEEE--ecccccC
Q 047355 168 -----TIQIWNMDSSAAKFT--LDAHEKGINCIDYFITSDKVYLITGSDDFT-----VKVWDYETKTCVQI--LEGHTNN 233 (312)
Q Consensus 168 -----~v~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~-----i~vwd~~~~~~~~~--~~~h~~~ 233 (312)
++..||..++.-... +........ ++ .-++.+.+.|+.|+. |..||.++.+.... +....+.
T Consensus 440 ~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a---~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~ 515 (571)
T KOG4441|consen 440 SNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VA---VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSA 515 (571)
T ss_pred ccccceEEEEcCCCCceeecCCcccccccce-EE---EECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcccccc
Confidence 467788776543221 111111111 11 225677788887763 78899877654432 2223333
Q ss_pred eEEEEEeCCCcEEEEEeCCCc-----EEEEeCCC
Q 047355 234 VTAVCFHPELRIIITASEDGT-----ILIWNATT 262 (312)
Q Consensus 234 i~~l~~~~~~~~l~s~s~dg~-----v~iwd~~~ 262 (312)
+.... -+++..+.|+.||. |..||..+
T Consensus 516 ~g~~~--~~~~ly~vGG~~~~~~l~~ve~ydp~~ 547 (571)
T KOG4441|consen 516 VGVVV--LGGKLYAVGGFDGNNNLNTVECYDPET 547 (571)
T ss_pred ccEEE--ECCEEEEEecccCccccceeEEcCCCC
Confidence 33233 25677888888764 66666543
No 366
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.18 E-value=0.15 Score=45.26 Aligned_cols=243 Identities=10% Similarity=0.084 Sum_probs=123.0
Q ss_pred cEEEEEEcCCCCeEEEE-ecCC----eEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEecC-----------CCe
Q 047355 19 RVKSVDFHPTQPWVLAS-LYSG----TVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSD-----------DKF 82 (312)
Q Consensus 19 ~i~~~~~~~~~~~l~~~-~~dg----~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~-----------dg~ 82 (312)
.+....++|+++++|.+ +..| .+++.|+++++.+... ........+.|.++++.++-... ...
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~-i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG-IENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE-EEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCc-ccccccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence 34467899999998866 3444 4999999988654321 11112223889999777654432 224
Q ss_pred EEEEEccCceee--eeecccccc--eeEEEEecCCCEEEEE-eCC---CcEEEEeCCCC---ceeeeEecCCccceE-EE
Q 047355 83 IRVFDYNTMASV--KEFEAHEDY--IRSLAVHPTFPFVLTA-SDD---KLIKLWDWEKN---WECTQTFEGHSHYVM-QS 150 (312)
Q Consensus 83 i~iwd~~~~~~~--~~~~~h~~~--i~~~~~~~~~~~l~t~-s~d---~~v~iwd~~~~---~~~~~~~~~~~~~v~-~~ 150 (312)
|+.|.+.+.... ..++..... ...+..++++++++.. ... ..+.+.|.... ......+......+. .+
T Consensus 204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v 283 (414)
T PF02897_consen 204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYV 283 (414)
T ss_dssp EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEE
T ss_pred EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEE
Confidence 777887765322 344443332 5678889999987643 322 34666676542 112222222222222 22
Q ss_pred EeCCCCCCEEEEE---eCCCeEEEEEcCCCcc---eeeecccccceeEEEEEEcCCceEEEEEeCCC--eEEEEeCCCCe
Q 047355 151 AFNPKDLNTFASA---SLDGTIQIWNMDSSAA---KFTLDAHEKGINCIDYFITSDKVYLITGSDDF--TVKVWDYETKT 222 (312)
Q Consensus 151 ~~~~~~~~~~~s~---s~dg~v~iwd~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg--~i~vwd~~~~~ 222 (312)
... +..+++.. ..++.|...++..... ...+..+...+.-..+... .+.+++..-.++ .|++++...+.
T Consensus 284 ~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~Lvl~~~~~~~~~l~v~~~~~~~ 360 (414)
T PF02897_consen 284 DHH--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLF-KDYLVLSYRENGSSRLRVYDLDDGK 360 (414)
T ss_dssp EEE--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEE-TTEEEEEEEETTEEEEEEEETT-TE
T ss_pred Ecc--CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEE-CCEEEEEEEECCccEEEEEECCCCc
Confidence 222 22333332 2345677777776553 2234444443222232233 344555555555 58889988333
Q ss_pred EEEEec-ccccCeEEEEEeCCCcE-EEEEeC---CCcEEEEeCCCcce
Q 047355 223 CVQILE-GHTNNVTAVCFHPELRI-IITASE---DGTILIWNATTFRL 265 (312)
Q Consensus 223 ~~~~~~-~h~~~i~~l~~~~~~~~-l~s~s~---dg~v~iwd~~~~~~ 265 (312)
....+. .-.+.|..+...++... .++-++ -+++..+|+.++++
T Consensus 361 ~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 361 ESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp EEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred EEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 333332 22344666655555443 333332 24677778877654
No 367
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.17 E-value=0.15 Score=44.81 Aligned_cols=260 Identities=16% Similarity=0.101 Sum_probs=151.0
Q ss_pred cEEEEEEcCCCCeEEEEe-cCCeEEEEeccCCceeeeEEecC-CceeEEEEeeCCcEEEEe-cCCCeEEEEEccCceeee
Q 047355 19 RVKSVDFHPTQPWVLASL-YSGTVCIWNYHSQTTEKSVKVTD-SPVRTAKFVAREHWIVCG-SDDKFIRVFDYNTMASVK 95 (312)
Q Consensus 19 ~i~~~~~~~~~~~l~~~~-~dg~v~iw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~g-~~dg~i~iwd~~~~~~~~ 95 (312)
....+++.|++..+.... ....+..-+.. ........... ..-..+...+.+..++.. ..++.|.+.|..+....+
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~ 110 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLG 110 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccc-cceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceee
Confidence 456677888886555443 22244444443 21111111111 112244566666655444 445889999977665554
Q ss_pred eecccccceeEEEEecCCCEEEEEeC---CCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeCCCeEEEE
Q 047355 96 EFEAHEDYIRSLAVHPTFPFVLTASD---DKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIW 172 (312)
Q Consensus 96 ~~~~h~~~i~~~~~~~~~~~l~t~s~---d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iw 172 (312)
...... .-..+++.++++.+..+.. ++.+.+.|............+. .+ ..+++.|.+....++-..+++|.+.
T Consensus 111 ~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~-~P-~~~a~~p~g~~vyv~~~~~~~v~vi 187 (381)
T COG3391 111 SIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGN-TP-TGVAVDPDGNKVYVTNSDDNTVSVI 187 (381)
T ss_pred Eeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCC-Cc-ceEEECCCCCeEEEEecCCCeEEEE
Confidence 443222 4567899999987765544 6788888866553333322222 22 6788888654455555688999999
Q ss_pred EcCCCccee-e----ecccccceeEEEEEEcCCceEEEEEeC---CCeEEEEeCCCCeEEEEeccccc-CeEEEEEeCCC
Q 047355 173 NMDSSAAKF-T----LDAHEKGINCIDYFITSDKVYLITGSD---DFTVKVWDYETKTCVQILEGHTN-NVTAVCFHPEL 243 (312)
Q Consensus 173 d~~~~~~~~-~----~~~~~~~v~~~~~~~~~~~~~l~sg~~---dg~i~vwd~~~~~~~~~~~~h~~-~i~~l~~~~~~ 243 (312)
|........ . ......+ ..+ .+.+++.++..... ++.+...|..++.....-..-.. ....+.++|++
T Consensus 188 ~~~~~~v~~~~~~~~~~~~~~P-~~i--~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g 264 (381)
T COG3391 188 DTSGNSVVRGSVGSLVGVGTGP-AGI--AVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAG 264 (381)
T ss_pred eCCCcceeccccccccccCCCC-ceE--EECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCC
Confidence 977654442 1 1111111 122 24566664443332 26899999888776654111111 45678999999
Q ss_pred cEEEEEeC-CCcEEEEeCCCcceeeecccCcc---ceEEEEEecCC
Q 047355 244 RIIITASE-DGTILIWNATTFRLQNTLSSGLE---RVWSIGYKKGS 285 (312)
Q Consensus 244 ~~l~s~s~-dg~v~iwd~~~~~~~~~~~~~~~---~v~~~~~~~~~ 285 (312)
..+..... .+.+.+.|..+.++........+ .++.+++.+..
T Consensus 265 ~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 310 (381)
T COG3391 265 KAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPLY 310 (381)
T ss_pred CEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceeec
Confidence 98887744 48999999988777665554433 35566655543
No 368
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.13 E-value=0.17 Score=44.81 Aligned_cols=192 Identities=11% Similarity=0.130 Sum_probs=93.8
Q ss_pred eEEEEEccCceeeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEe--cCCccceEEE-----EeCC
Q 047355 82 FIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTF--EGHSHYVMQS-----AFNP 154 (312)
Q Consensus 82 ~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~--~~~~~~v~~~-----~~~~ 154 (312)
.|.+|+.... .+..+.=-.+.|.++.|..+.. |+....||.++++|+.... ...+ ......+... .+.
T Consensus 62 ~I~iys~sG~-ll~~i~w~~~~iv~~~wt~~e~-LvvV~~dG~v~vy~~~G~~--~fsl~~~i~~~~v~e~~i~~~~~~- 136 (410)
T PF04841_consen 62 SIQIYSSSGK-LLSSIPWDSGRIVGMGWTDDEE-LVVVQSDGTVRVYDLFGEF--QFSLGEEIEEEKVLECRIFAIWFY- 136 (410)
T ss_pred EEEEECCCCC-EeEEEEECCCCEEEEEECCCCe-EEEEEcCCEEEEEeCCCce--eechhhhccccCcccccccccccC-
Confidence 4777775543 3333322227899999988655 5566789999999986443 1111 0111112111 221
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCcce-eee---ccccc------ceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEE
Q 047355 155 KDLNTFASASLDGTIQIWNMDSSAAK-FTL---DAHEK------GINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCV 224 (312)
Q Consensus 155 ~~~~~~~s~s~dg~v~iwd~~~~~~~-~~~---~~~~~------~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~ 224 (312)
.+ . ++.-..++.+.+.+--..... ..+ ..... ....+ ...+.+....+....++.+.+.+....+.
T Consensus 137 ~~-G-ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i-~~l~~~~~~~i~~~~g~~i~~i~~~~~~~- 212 (410)
T PF04841_consen 137 KN-G-IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVI-PLLSSDRVVEILLANGETIYIIDENSFKQ- 212 (410)
T ss_pred CC-C-EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccc-eEeecCcceEEEEecCCEEEEEEcccccc-
Confidence 12 2 343444555544432221111 111 11000 00000 11222333333334444455333221111
Q ss_pred EEecccccCeEEEEEeCCCcEEEEEeCCCcEEEEeCCCcceeeecccC-ccceEEEEEecCC
Q 047355 225 QILEGHTNNVTAVCFHPELRIIITASEDGTILIWNATTFRLQNTLSSG-LERVWSIGYKKGS 285 (312)
Q Consensus 225 ~~~~~h~~~i~~l~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~ 285 (312)
+. ..+++..++.||+++.+|.-..+|.+.+....-.+...++... ...+..+.|-.+.
T Consensus 213 --i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~d 271 (410)
T PF04841_consen 213 --ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGND 271 (410)
T ss_pred --cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCC
Confidence 21 2457999999999999999999999988865333333333332 3345566665553
No 369
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.10 E-value=0.28 Score=46.78 Aligned_cols=273 Identities=12% Similarity=0.166 Sum_probs=141.8
Q ss_pred CcEEEEEEcCCCCeEEEEecCCeEEEEeccCCcee----eeEEecCCceeEEEEeeCCcEEEEecCCCeEEEEEccCcee
Q 047355 18 DRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTE----KSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMAS 93 (312)
Q Consensus 18 ~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~ 93 (312)
..|.-.+|-.|..+|+++..||.+.-+.++...-. +.......|+.--.|...++.-+-+..|.-..+|.-+..-.
T Consensus 584 RSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv 663 (1096)
T KOG1897|consen 584 RSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLV 663 (1096)
T ss_pred hheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEE
Confidence 45677777777889999999999987766533211 22233344555555665544433334445455554332211
Q ss_pred eeeecccccceeEEE-Ee-cC-CCEEEEEeCCCcEEEEeCCCCce-eeeEecCCccceEEEEeCCCCCCEEEEEeC----
Q 047355 94 VKEFEAHEDYIRSLA-VH-PT-FPFVLTASDDKLIKLWDWEKNWE-CTQTFEGHSHYVMQSAFNPKDLNTFASASL---- 165 (312)
Q Consensus 94 ~~~~~~h~~~i~~~~-~~-~~-~~~l~t~s~d~~v~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~---- 165 (312)
..-+. -..+..++ ++ +. ...++++. .+.+++..+..-.+ ..++..-+ ......++.+. ...+.+.+.
T Consensus 664 ~spls--~kev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtvpl~-~~prrI~~q~~-sl~~~v~s~r~e~ 738 (1096)
T KOG1897|consen 664 YSPLS--LKEVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTVPLG-ESPRRICYQES-SLTFGVLSNRIES 738 (1096)
T ss_pred Eeccc--hHHhhhhcccccccCCceEEEec-CCceEEEEecchhhcceeeecCC-CChhheEeccc-ceEEEEEeccccc
Confidence 11110 01122222 21 11 22344444 45666665432111 11121111 11222333331 122222221
Q ss_pred -------C---CeEEEEEcCCCcceee--ecccccceeEEEEEEcCC-ceEEEEEeC----------CCeEEEEeCCCCe
Q 047355 166 -------D---GTIQIWNMDSSAAKFT--LDAHEKGINCIDYFITSD-KVYLITGSD----------DFTVKVWDYETKT 222 (312)
Q Consensus 166 -------d---g~v~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~-~~~l~sg~~----------dg~i~vwd~~~~~ 222 (312)
. ..++++|-++.+.... +...+.....+...+..| +.+++.|.. .|.|.+|.+...+
T Consensus 739 ~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~ 818 (1096)
T KOG1897|consen 739 SAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELN 818 (1096)
T ss_pred chhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCC
Confidence 1 1367777665443321 222222222222223333 677777753 4778888776644
Q ss_pred EEEEeccc--ccCeEEEEEeCCCcEEEEEeCCCcEEEEeCCCcceeeecccCccceEEEEEecCCCeEEEEecCCeEE
Q 047355 223 CVQILEGH--TNNVTAVCFHPELRIIITASEDGTILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGCDNGTLI 298 (312)
Q Consensus 223 ~~~~~~~h--~~~i~~l~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~ 298 (312)
.++....+ .+.+.++.- -+++++|.-+ ..|++++..+.+..+.-..+...+..+.....++.|+.|.--+.+-
T Consensus 819 ~L~~v~e~~v~Gav~aL~~-fngkllA~In--~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sit 893 (1096)
T KOG1897|consen 819 SLELVAETVVKGAVYALVE-FNGKLLAGIN--QSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSIT 893 (1096)
T ss_pred ceeeeeeeeeccceeehhh-hCCeEEEecC--cEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEE
Confidence 44444333 234444432 3567776555 5899999988777777777788889999999999999988766544
No 370
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.09 E-value=0.015 Score=51.26 Aligned_cols=138 Identities=11% Similarity=0.191 Sum_probs=83.2
Q ss_pred EEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCC------CCEEEEEeCCCeEEEEEcCCCcc--eeeeccccc
Q 047355 117 LTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKD------LNTFASASLDGTIQIWNMDSSAA--KFTLDAHEK 188 (312)
Q Consensus 117 ~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~~~~s~s~dg~v~iwd~~~~~~--~~~~~~~~~ 188 (312)
.++..-..++-.|+..+ +.+....-+.. |.-+.+.|.. ...-+.|-.|..|.-||.+-... +...+.|+-
T Consensus 350 ~~~~~~~~l~klDIE~G-KIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy 427 (644)
T KOG2395|consen 350 MDGGEQDKLYKLDIERG-KIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQY 427 (644)
T ss_pred eCCCCcCcceeeecccc-eeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccc
Confidence 35555556777777665 33333333333 2333333321 12234566688899999984332 122233321
Q ss_pred ----ceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEecccccCeEEEEEeCCCcEEEEEeCCCcEEEEeC
Q 047355 189 ----GINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITASEDGTILIWNA 260 (312)
Q Consensus 189 ----~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~s~dg~v~iwd~ 260 (312)
...|.+ ...+ .+++.||.+|.|++||-.....-..+++...+|..|..+.+|++|++.+. ..+.+.++
T Consensus 428 ~~k~nFsc~a--TT~s-G~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~-tyLlLi~t 499 (644)
T KOG2395|consen 428 STKNNFSCFA--TTES-GYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCK-TYLLLIDT 499 (644)
T ss_pred ccccccceee--ecCC-ceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecc-cEEEEEEE
Confidence 123332 3444 47999999999999996323333456788899999999999999887774 56666664
No 371
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.04 E-value=0.098 Score=43.94 Aligned_cols=154 Identities=14% Similarity=0.128 Sum_probs=76.0
Q ss_pred ccCcEEEEEEcCCCCeEEEEecCCeEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEecCCCeEEEEE-ccCceee
Q 047355 16 KSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFD-YNTMASV 94 (312)
Q Consensus 16 ~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd-~~~~~~~ 94 (312)
....+..+..++||++++++.......-|+.....-....+.....+..+.|.+++...+.+ ..|.|+.=+ ....+..
T Consensus 143 ~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w 221 (302)
T PF14870_consen 143 TSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETW 221 (302)
T ss_dssp ----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE
T ss_pred CcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcccc
Confidence 34678899999999988888776666788754433333344456789999999997765544 788888876 2222222
Q ss_pred ee--e--cccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeCCCeEE
Q 047355 95 KE--F--EAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQ 170 (312)
Q Consensus 95 ~~--~--~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~ 170 (312)
.+ . ....-.+.++++.+.+...+.|+....++--|--...+.......-......+.|.++ +.-...+.+|.|-
T Consensus 222 ~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~--~~gf~lG~~G~ll 299 (302)
T PF14870_consen 222 SEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLLVSTDGGKTWQKDRVGENVPSNLYRIVFVNP--DKGFVLGQDGVLL 299 (302)
T ss_dssp ---B-TTSS--S-EEEEEESSSS-EEEEESTT-EEEESSTTSS-EE-GGGTTSSS---EEEEEET--TEEEEE-STTEEE
T ss_pred ccccCCcccCceeeEEEEecCCCCEEEEeCCccEEEeCCCCccceECccccCCCCceEEEEEcCC--CceEEECCCcEEE
Confidence 22 1 1222347899999888877777654332222211111111111122334566677643 3444555777765
Q ss_pred EE
Q 047355 171 IW 172 (312)
Q Consensus 171 iw 172 (312)
-|
T Consensus 300 ~~ 301 (302)
T PF14870_consen 300 RY 301 (302)
T ss_dssp EE
T ss_pred Ee
Confidence 54
No 372
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.02 E-value=0.14 Score=41.83 Aligned_cols=190 Identities=12% Similarity=0.161 Sum_probs=93.2
Q ss_pred eeecccccceeEEEEecCCC-EEEEEeCCCcEEEEeCCCCceeeeE--ecCCccceEEEEeCCCCCCEEEEEeCCCeEEE
Q 047355 95 KEFEAHEDYIRSLAVHPTFP-FVLTASDDKLIKLWDWEKNWECTQT--FEGHSHYVMQSAFNPKDLNTFASASLDGTIQI 171 (312)
Q Consensus 95 ~~~~~h~~~i~~~~~~~~~~-~l~t~s~d~~v~iwd~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~i 171 (312)
+.+.+-...+..++++|+.. ++++....+.|.-.+... ..+.. +.+ ..-.-.+.+.. ++.++++--.++.+.+
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G--~vlr~i~l~g-~~D~EgI~y~g-~~~~vl~~Er~~~L~~ 90 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDG--KVLRRIPLDG-FGDYEGITYLG-NGRYVLSEERDQRLYI 90 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT----EEEEEE-SS--SSEEEEEE-S-TTEEEEEETTTTEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCCC--CEEEEEeCCC-CCCceeEEEEC-CCEEEEEEcCCCcEEE
Confidence 34555566799999999765 555666677777777543 33333 333 23345566653 3334444434889999
Q ss_pred EEcCCCcc---e---e--ee--c-ccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCC---CeEEE--Eec------c
Q 047355 172 WNMDSSAA---K---F--TL--D-AHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYET---KTCVQ--ILE------G 229 (312)
Q Consensus 172 wd~~~~~~---~---~--~~--~-~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~---~~~~~--~~~------~ 229 (312)
+++..... . . .+ . .+..++..++|... .++++ .+-+..-..+|.+.. ...+. ... .
T Consensus 91 ~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~-~~~L~-v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (248)
T PF06977_consen 91 FTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPK-TNRLF-VAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKL 168 (248)
T ss_dssp EEE----TT--EEEEEEEE---S---SS--EEEEEETT-TTEEE-EEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT-
T ss_pred EEEeccccccchhhceEEecccccCCCcceEEEEEcCC-CCEEE-EEeCCCChhhEEEccccCccceeeccccccccccc
Confidence 98843211 1 1 11 1 23455777776432 33444 444444455555432 11111 111 1
Q ss_pred cccCeEEEEEeCC-CcEEEEEeCCCcEEEEeCCCcceeeecc--c-------CccceEEEEEecCCCeEEEE
Q 047355 230 HTNNVTAVCFHPE-LRIIITASEDGTILIWNATTFRLQNTLS--S-------GLERVWSIGYKKGSNQVAFG 291 (312)
Q Consensus 230 h~~~i~~l~~~~~-~~~l~s~s~dg~v~iwd~~~~~~~~~~~--~-------~~~~v~~~~~~~~~~~l~~~ 291 (312)
....+.+++++|. +++++....+..|..+| .+++.+..+. . ...+.-.++|.++|++.++.
T Consensus 169 ~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs 239 (248)
T PF06977_consen 169 FVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS 239 (248)
T ss_dssp -SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE
T ss_pred eeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc
Confidence 2346889999985 56777788888999999 4566543322 2 12468899999999777765
No 373
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.01 E-value=0.23 Score=44.28 Aligned_cols=225 Identities=15% Similarity=0.165 Sum_probs=102.3
Q ss_pred hhhcccCcEEEEEEcCCCCeEEEEecCCeEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEecCCCeEEEEEccCc
Q 047355 12 EFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTM 91 (312)
Q Consensus 12 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~ 91 (312)
++....-....+.++|+|++++. +.||.-.|+.....+... + +......|.++++ +++-...++|.++.--+.
T Consensus 27 ~lg~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~-~----G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~ 99 (443)
T PF04053_consen 27 ELGSCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKA-F----GSGLSFVWSSRNR-YAVLESSSTIKIYKNFKN 99 (443)
T ss_dssp EEEE-SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEE-E----EE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE
T ss_pred cCCCCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCcccc-c----CceeEEEEecCcc-EEEEECCCeEEEEEcCcc
Confidence 33334456789999999999888 667887888744333221 1 2334567888554 666666788999632222
Q ss_pred eeeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeCCCeEEE
Q 047355 92 ASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQI 171 (312)
Q Consensus 92 ~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~i 171 (312)
...+.++.. ..+..+.. |.+|+..+.+ .|.+||+.+. ..+..+... .+..+.|++. +.+++-.+.+ ++.+
T Consensus 100 ~~~k~i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~-~~i~~i~v~--~vk~V~Ws~~-g~~val~t~~-~i~i 169 (443)
T PF04053_consen 100 EVVKSIKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETG-KLIRRIDVS--AVKYVIWSDD-GELVALVTKD-SIYI 169 (443)
T ss_dssp -TT-----S-S-EEEEE----SSSEEEEETT-EEEEE-TTT---EEEEESS---E-EEEEE-TT-SSEEEEE-S--SEEE
T ss_pred ccceEEcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHc-ceeeEEecC--CCcEEEEECC-CCEEEEEeCC-eEEE
Confidence 222233221 12333332 7777766654 8999999876 444555432 3678889974 5677666644 5777
Q ss_pred EEcCCCc-----------ceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEecccccCeEEEEEe
Q 047355 172 WNMDSSA-----------AKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFH 240 (312)
Q Consensus 172 wd~~~~~-----------~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~i~~l~~~ 240 (312)
++.+... ....+..-...|.+..|. .+ .++.+-. . .|+.+ -.+.. ..+..-..++.=+.+.
T Consensus 170 l~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~--~d-~fiYtT~-~-~lkYl--~~Ge~-~~i~~ld~~~yllgy~ 241 (443)
T PF04053_consen 170 LKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWV--ED-CFIYTTS-N-HLKYL--VNGET-GIIAHLDKPLYLLGYL 241 (443)
T ss_dssp EEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEE--TT-EEEEE-T-T-EEEEE--ETTEE-EEEEE-SS--EEEEEE
T ss_pred EEecchhcccccccCchhceEEEEEecceeEEEEEE--cC-EEEEEcC-C-eEEEE--EcCCc-ceEEEcCCceEEEEEE
Confidence 7654320 111111112233333331 12 2222211 1 34332 11211 1112123456666777
Q ss_pred CCCcEEEEEeCCCcEEEEeCC
Q 047355 241 PELRIIITASEDGTILIWNAT 261 (312)
Q Consensus 241 ~~~~~l~s~s~dg~v~iwd~~ 261 (312)
|+...+.....|+.|..+.+.
T Consensus 242 ~~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 242 PKENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp TTTTEEEEE-TT--EEEEE--
T ss_pred ccCCEEEEEECCCCEEEEEEC
Confidence 766677777788888777664
No 374
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.96 E-value=0.19 Score=46.50 Aligned_cols=218 Identities=15% Similarity=0.115 Sum_probs=107.1
Q ss_pred CcEEEEecCC------CeEEEEEccCceee--eeecccccceeEEEEecCCCEEEEEeCC------CcEEEEeCCCCcee
Q 047355 71 EHWIVCGSDD------KFIRVFDYNTMASV--KEFEAHEDYIRSLAVHPTFPFVLTASDD------KLIKLWDWEKNWEC 136 (312)
Q Consensus 71 ~~~l~~g~~d------g~i~iwd~~~~~~~--~~~~~h~~~i~~~~~~~~~~~l~t~s~d------~~v~iwd~~~~~~~ 136 (312)
+..++.|+.+ ..+..||..+..-. ..+. ....-.++++. .+.+.++||.| .++..||...+...
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~ 362 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWT 362 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCcee
Confidence 4455666665 46778887765321 1121 12223344444 34666788888 34566776544211
Q ss_pred eeEecCCccceEEEEeCCCCCCEEEEEeCCC-----eEEEEEcCCCcceeeecccccceeEEEEEEcCCceEEEEEeCCC
Q 047355 137 TQTFEGHSHYVMQSAFNPKDLNTFASASLDG-----TIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDF 211 (312)
Q Consensus 137 ~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg-----~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg 211 (312)
....-...-.......-++.+.++|+.|| ++-.||..+.+-...-. .......... ..-+|.+.+.|+.++
T Consensus 363 --~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~-m~~~r~~~gv-~~~~g~iYi~GG~~~ 438 (571)
T KOG4441|consen 363 --PVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP-MLTRRSGHGV-AVLGGKLYIIGGGDG 438 (571)
T ss_pred --ccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCC-CCcceeeeEE-EEECCEEEEEcCcCC
Confidence 11111111111111112456788888887 46778877654221110 1111111111 123577778887554
Q ss_pred ------eEEEEeCCCCeEEEE--ecccccCeEEEEEeCCCcEEEEEeCCCc-----EEEEeCCCc--ceeeecccCccce
Q 047355 212 ------TVKVWDYETKTCVQI--LEGHTNNVTAVCFHPELRIIITASEDGT-----ILIWNATTF--RLQNTLSSGLERV 276 (312)
Q Consensus 212 ------~i~vwd~~~~~~~~~--~~~h~~~i~~l~~~~~~~~l~s~s~dg~-----v~iwd~~~~--~~~~~~~~~~~~v 276 (312)
.+..||..+.+.... +..-..... ++ .-++.+++.||.|+. |..+|..+. .....+......+
T Consensus 439 ~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~ 516 (571)
T KOG4441|consen 439 SSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VA-VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAV 516 (571)
T ss_pred CccccceEEEEcCCCCceeecCCcccccccce-EE-EECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccc
Confidence 467888776654332 221222222 22 235688888888763 677887653 2332222222222
Q ss_pred EEEEEecCCCeEEEEecCCeEE
Q 047355 277 WSIGYKKGSNQVAFGCDNGTLI 298 (312)
Q Consensus 277 ~~~~~~~~~~~l~~~~~~g~i~ 298 (312)
..+ .-+++..+.|+.+|.-.
T Consensus 517 g~~--~~~~~ly~vGG~~~~~~ 536 (571)
T KOG4441|consen 517 GVV--VLGGKLYAVGGFDGNNN 536 (571)
T ss_pred cEE--EECCEEEEEecccCccc
Confidence 222 23566677777776543
No 375
>PHA02713 hypothetical protein; Provisional
Probab=96.95 E-value=0.071 Score=49.23 Aligned_cols=71 Identities=11% Similarity=0.156 Sum_probs=39.9
Q ss_pred CCEEEEEeCC------CeEEEEEcCC-Ccce--eeecccccceeEEEEEEcCCceEEEEEeCCC--eEEEEeCCCCeEEE
Q 047355 157 LNTFASASLD------GTIQIWNMDS-SAAK--FTLDAHEKGINCIDYFITSDKVYLITGSDDF--TVKVWDYETKTCVQ 225 (312)
Q Consensus 157 ~~~~~s~s~d------g~v~iwd~~~-~~~~--~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg--~i~vwd~~~~~~~~ 225 (312)
+.+.+.|+.+ ..+..||..+ .+-. ..+.......... .-++.+.+.|+.++ .+..||..+.+-..
T Consensus 464 ~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~----~~~~~iyv~Gg~~~~~~~e~yd~~~~~W~~ 539 (557)
T PHA02713 464 DDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTI----LHDNTIMMLHCYESYMLQDTFNVYTYEWNH 539 (557)
T ss_pred CEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeE----EECCEEEEEeeecceeehhhcCcccccccc
Confidence 3455666644 2467888876 4322 1222222222222 22577888898888 78888888776555
Q ss_pred Eecccc
Q 047355 226 ILEGHT 231 (312)
Q Consensus 226 ~~~~h~ 231 (312)
.-..|.
T Consensus 540 ~~~~~~ 545 (557)
T PHA02713 540 ICHQHS 545 (557)
T ss_pred hhhhcC
Confidence 444454
No 376
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.82 E-value=0.4 Score=44.03 Aligned_cols=190 Identities=12% Similarity=0.045 Sum_probs=103.1
Q ss_pred CCeEEEEecCCeEEEEeccCCceeeeEEecCC-cee----------EEEEeeCCcEEEEecCCCeEEEEEccCceeeeee
Q 047355 29 QPWVLASLYSGTVCIWNYHSQTTEKSVKVTDS-PVR----------TAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEF 97 (312)
Q Consensus 29 ~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~-~v~----------~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~ 97 (312)
+..|+.++.++.|.-.|..+++.+-.+..... .+. .+.+ .+..++.++.|+.+...|.++++.+-..
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 45777778888888888888776655432211 111 0111 2356788889999999999998866444
Q ss_pred cc--cc--cceeEEEEecCCCEEEEEe------CCCcEEEEeCCCCceeeeEecC--C----------------------
Q 047355 98 EA--HE--DYIRSLAVHPTFPFVLTAS------DDKLIKLWDWEKNWECTQTFEG--H---------------------- 143 (312)
Q Consensus 98 ~~--h~--~~i~~~~~~~~~~~l~t~s------~d~~v~iwd~~~~~~~~~~~~~--~---------------------- 143 (312)
.. +. ..+.+--.-.++ .++.+. .+|.|.-+|.++....-+.... .
T Consensus 147 ~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~ 225 (527)
T TIGR03075 147 KNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPG 225 (527)
T ss_pred ccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCC
Confidence 32 11 112211111123 344443 2577888887655322110000 0
Q ss_pred ------ccce-EEEEeCCCCCCEEEEEeCC-----C-----------eEEEEEcCCCcceeeecc--cccc-------ee
Q 047355 144 ------SHYV-MQSAFNPKDLNTFASASLD-----G-----------TIQIWNMDSSAAKFTLDA--HEKG-------IN 191 (312)
Q Consensus 144 ------~~~v-~~~~~~~~~~~~~~s~s~d-----g-----------~v~iwd~~~~~~~~~~~~--~~~~-------v~ 191 (312)
...+ ....+.|. .+++..+..+ + +|.-.|+++++.+..++. |... ..
T Consensus 226 ~~~~~gg~~~W~~~s~D~~-~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~ 304 (527)
T TIGR03075 226 DAWKTGGGATWGTGSYDPE-TNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMI 304 (527)
T ss_pred CccccCCCCccCceeEcCC-CCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcE
Confidence 0011 12244443 3444444321 2 577778888887755543 2211 11
Q ss_pred EEEEEEcCCce---EEEEEeCCCeEEEEeCCCCeEE
Q 047355 192 CIDYFITSDKV---YLITGSDDFTVKVWDYETKTCV 224 (312)
Q Consensus 192 ~~~~~~~~~~~---~l~sg~~dg~i~vwd~~~~~~~ 224 (312)
-++ ...+++ .++.+..+|.+.+.|-++++++
T Consensus 305 l~d--~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 305 LFD--LKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred EEE--eccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 112 223454 7889999999999999998875
No 377
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.80 E-value=0.025 Score=49.82 Aligned_cols=144 Identities=19% Similarity=0.272 Sum_probs=92.1
Q ss_pred eCCcEEE-EecCCCeEEEEEccCceeeeeecccccceeEEEEecCCCE-------EEEEeCCCcEEEEeCCCCcee-eeE
Q 047355 69 AREHWIV-CGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPF-------VLTASDDKLIKLWDWEKNWEC-TQT 139 (312)
Q Consensus 69 ~~~~~l~-~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~-------l~t~s~d~~v~iwd~~~~~~~-~~~ 139 (312)
.+..+|+ ++.....++-.|++.++.+.+.+-|.+ |.-+.+.|+.+. -+.|-.|..|.-||.+-.... +..
T Consensus 343 ~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~ 421 (644)
T KOG2395|consen 343 ADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAV 421 (644)
T ss_pred cccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeee
Confidence 3444444 566667788889999999999988876 777777776532 234666788888997643221 111
Q ss_pred ecCCc----cceEEEEeCCCCCCEEEEEeCCCeEEEEEcCCCcceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEE
Q 047355 140 FEGHS----HYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKV 215 (312)
Q Consensus 140 ~~~~~----~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~v 215 (312)
.++|. .... ++-.....++++||.+|.||+||--.......+++-..+|.-++ .+.+|.+|++- .+..+.+
T Consensus 422 ~q~kqy~~k~nFs--c~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVd--vtadGKwil~T-c~tyLlL 496 (644)
T KOG2395|consen 422 VQSKQYSTKNNFS--CFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVD--VTADGKWILAT-CKTYLLL 496 (644)
T ss_pred eeccccccccccc--eeeecCCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEE--eeccCcEEEEe-cccEEEE
Confidence 11111 1111 12223457899999999999999743344445667677788777 46678876544 4556666
Q ss_pred EeC
Q 047355 216 WDY 218 (312)
Q Consensus 216 wd~ 218 (312)
.++
T Consensus 497 i~t 499 (644)
T KOG2395|consen 497 IDT 499 (644)
T ss_pred EEE
Confidence 664
No 378
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.76 E-value=0.28 Score=41.48 Aligned_cols=220 Identities=10% Similarity=0.145 Sum_probs=118.4
Q ss_pred EEcCCCCeE-EEEecCCeEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEecCCCeEEEEEccCceeeeeec----
Q 047355 24 DFHPTQPWV-LASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFE---- 98 (312)
Q Consensus 24 ~~~~~~~~l-~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~---- 98 (312)
.|.++...| .+--..+.|.-|+..+++. ..+.... .+..+.....+..|+++ ..| +.+++.++......+.
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~~p~-~~~~~~~~d~~g~Lv~~-~~g-~~~~~~~~~~~~t~~~~~~~ 106 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKK-RVFPSPG-GFSSGALIDAGGRLIAC-EHG-VRLLDPDTGGKITLLAEPED 106 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEECCC-CcccceeecCCCeEEEE-ccc-cEEEeccCCceeEEeccccC
Confidence 456766644 4556678888888765532 3444333 23344444444445443 333 4566665544422221
Q ss_pred cc-ccceeEEEEecCCCEEEEEeC------C---CcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeCCCe
Q 047355 99 AH-EDYIRSLAVHPTFPFVLTASD------D---KLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGT 168 (312)
Q Consensus 99 ~h-~~~i~~~~~~~~~~~l~t~s~------d---~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~ 168 (312)
+. ...-+...+.|+|.+.++... + ..-.+|-+.......+....+-..-+.++|+|.+..+.++=+..+.
T Consensus 107 ~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~ 186 (307)
T COG3386 107 GLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANR 186 (307)
T ss_pred CCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCe
Confidence 11 123467788888887664433 0 0112333221112223333334445678999976566666677788
Q ss_pred EEEEEcCC--C---cce-ee-ecccccceeEEEEEEcCCceEEEEEeCCC-eEEEEeCCCCeEEEEecccccCeEEEEEe
Q 047355 169 IQIWNMDS--S---AAK-FT-LDAHEKGINCIDYFITSDKVYLITGSDDF-TVKVWDYETKTCVQILEGHTNNVTAVCFH 240 (312)
Q Consensus 169 v~iwd~~~--~---~~~-~~-~~~~~~~v~~~~~~~~~~~~~l~sg~~dg-~i~vwd~~~~~~~~~~~~h~~~i~~l~~~ 240 (312)
|..|++.. . ... .. ........-.+ ....+|.+.+++...| .|..|+.. ++++..+..+...+++++|=
T Consensus 187 i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~--~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~Fg 263 (307)
T COG3386 187 IHRYDLDPATGPIGGRRGFVDFDEEPGLPDGM--AVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFG 263 (307)
T ss_pred EEEEecCcccCccCCcceEEEccCCCCCCCce--EEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEe
Confidence 98888763 1 111 11 11111111112 2345666664554444 89999987 88888887776788999995
Q ss_pred -CCCcEEEEEe
Q 047355 241 -PELRIIITAS 250 (312)
Q Consensus 241 -~~~~~l~s~s 250 (312)
|+.+.|...+
T Consensus 264 G~~~~~L~iTs 274 (307)
T COG3386 264 GPDLNTLYITS 274 (307)
T ss_pred CCCcCEEEEEe
Confidence 5555554444
No 379
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.73 E-value=0.0071 Score=35.14 Aligned_cols=33 Identities=21% Similarity=0.619 Sum_probs=29.4
Q ss_pred ccCeEEEEEeCCCcEEEEEeCCCcEEEEeCCCcc
Q 047355 231 TNNVTAVCFHPELRIIITASEDGTILIWNATTFR 264 (312)
Q Consensus 231 ~~~i~~l~~~~~~~~l~s~s~dg~v~iwd~~~~~ 264 (312)
...|..++|+|...+||.+..||.|.++.+ +++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 456999999999999999999999999998 443
No 380
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.71 E-value=0.26 Score=40.53 Aligned_cols=165 Identities=11% Similarity=0.145 Sum_probs=105.4
Q ss_pred hhcccCcEEEEEEcCCCCeEEEEecCCeEEEEeccCCceeeeEEecC-CceeEEEEeeCCcEEEEecCCCeEEEEEccCc
Q 047355 13 FIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTD-SPVRTAKFVAREHWIVCGSDDKFIRVFDYNTM 91 (312)
Q Consensus 13 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~ 91 (312)
..+....|.++.|+|+.+.|++......-.+|=-..+..++++.... ..-..+.+..++.+.++-=.++.+.++.++..
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 45566779999999999999998888877777545566666654321 12345677777777776667788888766543
Q ss_pred eeee----------eecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeee--EecCC-------ccceEEEEe
Q 047355 92 ASVK----------EFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQ--TFEGH-------SHYVMQSAF 152 (312)
Q Consensus 92 ~~~~----------~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~--~~~~~-------~~~v~~~~~ 152 (312)
.... ...........++|.|....+..+-.-.-++||.+........ ....+ -..+..+.|
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~ 240 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEF 240 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccccee
Confidence 2111 1111144567899999988888888888888887654321111 01111 123455677
Q ss_pred CCCCCCEEEEEeCCCeEEEEEcCCC
Q 047355 153 NPKDLNTFASASLDGTIQIWNMDSS 177 (312)
Q Consensus 153 ~~~~~~~~~s~s~dg~v~iwd~~~~ 177 (312)
++..+.+++-+-+++.+.-.|....
T Consensus 241 ~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 241 NAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred cCCCCcEEEEecCCceEEEEecCCC
Confidence 7766666666666777777776544
No 381
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.52 E-value=0.62 Score=43.29 Aligned_cols=150 Identities=10% Similarity=0.029 Sum_probs=79.6
Q ss_pred CcEEEEEEcCCCCeEEEEe------cCCeEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEecCC-----------
Q 047355 18 DRVKSVDFHPTQPWVLASL------YSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDD----------- 80 (312)
Q Consensus 18 ~~i~~~~~~~~~~~l~~~~------~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d----------- 80 (312)
..+.+.+++|+|+.++... .|..-.+|-.........+... .....-.|++++++|.+....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g-~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~ 428 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEG-HSLTRPSWSLDADAVWVVVDGNTVVRVIRDPA 428 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecC-CCCCCceECCCCCceEEEecCcceEEEeccCC
Confidence 4678899999999888665 2444444433222112222222 236677899998877766432
Q ss_pred -CeEEEEEccCceeeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeC---CCCceee---eEec-CCccceEEEEe
Q 047355 81 -KFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDW---EKNWECT---QTFE-GHSHYVMQSAF 152 (312)
Q Consensus 81 -g~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~---~~~~~~~---~~~~-~~~~~v~~~~~ 152 (312)
+.+.+.+++.++..+ .....|..+.|+|+|..++... ++.|.+--+ ..+...+ ..+. .-...+..+.|
T Consensus 429 ~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W 504 (591)
T PRK13616 429 TGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDW 504 (591)
T ss_pred CceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceE
Confidence 223322333322211 2345799999999999887655 466666322 1221111 1111 12223466778
Q ss_pred CCCCCCEEEEEeCCCeEEEEEc
Q 047355 153 NPKDLNTFASASLDGTIQIWNM 174 (312)
Q Consensus 153 ~~~~~~~~~s~s~dg~v~iwd~ 174 (312)
.+.+ . |+++..++.-.+|.+
T Consensus 505 ~~~~-~-L~V~~~~~~~~v~~v 524 (591)
T PRK13616 505 RTGD-S-LVVGRSDPEHPVWYV 524 (591)
T ss_pred ecCC-E-EEEEecCCCCceEEE
Confidence 7643 3 445555444444443
No 382
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.50 E-value=0.013 Score=34.08 Aligned_cols=32 Identities=19% Similarity=0.342 Sum_probs=28.7
Q ss_pred cCcEEEEEEcCCCCeEEEEecCCeEEEEeccC
Q 047355 17 SDRVKSVDFHPTQPWVLASLYSGTVCIWNYHS 48 (312)
Q Consensus 17 ~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~ 48 (312)
..+|..++|+|..+.||.+..+|.|.++.+..
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~ 42 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLNW 42 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECCC
Confidence 35699999999999999999999999998843
No 383
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.45 E-value=0.76 Score=42.73 Aligned_cols=206 Identities=15% Similarity=0.110 Sum_probs=106.0
Q ss_pred CCeEEEEEccCceeeeeecccccceeEEEEecCCCEEEEEe------CCCcEEEE--eCCCCceeeeEecCCccceEEEE
Q 047355 80 DKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTAS------DDKLIKLW--DWEKNWECTQTFEGHSHYVMQSA 151 (312)
Q Consensus 80 dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s------~d~~v~iw--d~~~~~~~~~~~~~~~~~v~~~~ 151 (312)
+|.+.-.+-.....+....+....+.+.+++|+++.++..- .|..-.+| +.... ......+. ....-.
T Consensus 328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~--~~~lt~g~--~~t~Ps 403 (591)
T PRK13616 328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGV--AVQVLEGH--SLTRPS 403 (591)
T ss_pred CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCc--ceeeecCC--CCCCce
Confidence 55554443222222222222334678889999999877554 24444444 43222 11112222 245567
Q ss_pred eCCCCCCEEEEEeC------------CCeEEEEEcCCCcceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEE---E
Q 047355 152 FNPKDLNTFASASL------------DGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKV---W 216 (312)
Q Consensus 152 ~~~~~~~~~~s~s~------------dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~v---w 216 (312)
|+|.+ ..+++.+. .+.+.+.+++.+.... .....+..+. +++||..++.-. ++.|.+ -
T Consensus 404 WspDG-~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~--wSpDG~RiA~i~-~g~v~Va~Vv 476 (591)
T PRK13616 404 WSLDA-DAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQ--LSRDGVRAAMII-GGKVYLAVVE 476 (591)
T ss_pred ECCCC-CceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEE--ECCCCCEEEEEE-CCEEEEEEEE
Confidence 88753 33433332 2334434444433322 2234567666 578888777655 477776 3
Q ss_pred eCCCCeEEEE-----e-cccccCeEEEEEeCCCcEEEEEeCCCcEEEEeCCC-cceeeeccc--CccceEEEEEecCCCe
Q 047355 217 DYETKTCVQI-----L-EGHTNNVTAVCFHPELRIIITASEDGTILIWNATT-FRLQNTLSS--GLERVWSIGYKKGSNQ 287 (312)
Q Consensus 217 d~~~~~~~~~-----~-~~h~~~i~~l~~~~~~~~l~s~s~dg~v~iwd~~~-~~~~~~~~~--~~~~v~~~~~~~~~~~ 287 (312)
....+. ... + .+-...+.+++|.+++.++ .+..++...+|.++- +.....+.. ....+.+++=++ ..
T Consensus 477 r~~~G~-~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~--~~ 552 (591)
T PRK13616 477 QTEDGQ-YALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASP--ST 552 (591)
T ss_pred eCCCCc-eeecccEEeecccCCccccceEecCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCC--ce
Confidence 333443 111 2 2233446889999998854 555555555665432 222222222 245677777665 35
Q ss_pred EEEEecCCeEEEE
Q 047355 288 VAFGCDNGTLIVK 300 (312)
Q Consensus 288 l~~~~~~g~i~v~ 300 (312)
|..+..+|.+++.
T Consensus 553 iyv~~~~g~~~l~ 565 (591)
T PRK13616 553 VYVTDARAVLQLP 565 (591)
T ss_pred EEEEcCCceEEec
Confidence 6666777766654
No 384
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.12 E-value=1.1 Score=41.21 Aligned_cols=60 Identities=13% Similarity=0.050 Sum_probs=39.4
Q ss_pred CeEEEEeCCCCeEEEEecccccCeEEEEEeCCCcEEEEEeCCCcEEEEeCCCcceeeeccc
Q 047355 211 FTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITASEDGTILIWNATTFRLQNTLSS 271 (312)
Q Consensus 211 g~i~vwd~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~ 271 (312)
|.|.-+|+.+++..-..+.......+. +.-.+.+++.++.||.++.+|.++++.+.+...
T Consensus 441 g~l~AiD~~tGk~~W~~~~~~p~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~ 500 (527)
T TIGR03075 441 GSLIAWDPITGKIVWEHKEDFPLWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFKT 500 (527)
T ss_pred eeEEEEeCCCCceeeEecCCCCCCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEeC
Confidence 568888888887665444221111121 122445777888899999999999988776554
No 385
>PRK13684 Ycf48-like protein; Provisional
Probab=96.03 E-value=0.7 Score=39.74 Aligned_cols=151 Identities=10% Similarity=0.029 Sum_probs=78.2
Q ss_pred cCcEEEEEEcCCCCeEEEEecCCeEEE-EeccCCceeeeEEecCCceeEEEEeeCCcEEEEecCCCeEEEEEccCceeee
Q 047355 17 SDRVKSVDFHPTQPWVLASLYSGTVCI-WNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVK 95 (312)
Q Consensus 17 ~~~i~~~~~~~~~~~l~~~~~dg~v~i-w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~ 95 (312)
...++.+.+.|++.++++ +..|.+.. ++-....-..........+..+.+.++++.++.| ..|.+++=..+.+...+
T Consensus 172 ~g~~~~i~~~~~g~~v~~-g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~ 249 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAV-SSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWS 249 (334)
T ss_pred cceEEEEEECCCCeEEEE-eCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccc
Confidence 457899999998866554 44555442 2211111212222334567888888888766655 55766542334443333
Q ss_pred eeccc----ccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEe---cCCccceEEEEeCCCCCCEEEEEeCCCe
Q 047355 96 EFEAH----EDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTF---EGHSHYVMQSAFNPKDLNTFASASLDGT 168 (312)
Q Consensus 96 ~~~~h----~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~s~s~dg~ 168 (312)
....+ ...+.++.+.|++..++ ++.+|.+.. ..... ..-... ..-......+.|... +..+..+..|.
T Consensus 250 ~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~~-S~d~G-~tW~~~~~~~~~~~~~~~~~~~~~--~~~~~~G~~G~ 324 (334)
T PRK13684 250 KPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLLV-SKDGG-KTWEKDPVGEEVPSNFYKIVFLDP--EKGFVLGQRGV 324 (334)
T ss_pred cccCCccccccceeeEEEcCCCCEEE-EcCCCeEEE-eCCCC-CCCeECCcCCCCCcceEEEEEeCC--CceEEECCCce
Confidence 22221 23478888988777655 445665543 22211 111111 111223455555533 23344556777
Q ss_pred EEEEEc
Q 047355 169 IQIWNM 174 (312)
Q Consensus 169 v~iwd~ 174 (312)
|-.|+-
T Consensus 325 il~~~~ 330 (334)
T PRK13684 325 LLRYVG 330 (334)
T ss_pred EEEecC
Confidence 776653
No 386
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.02 E-value=0.73 Score=38.28 Aligned_cols=146 Identities=14% Similarity=0.165 Sum_probs=83.9
Q ss_pred cCCCEEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeCCCeEEEEEcCCCcceeee-------
Q 047355 111 PTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTL------- 183 (312)
Q Consensus 111 ~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~------- 183 (312)
..++.|+.|..+| +.+++........... +...|..+...|. .+.+++-+ |+.++++++.........
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~-~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~ 79 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPE-LNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPK 79 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecc-cCEEEEEc-CCccEEEEchhhccccccccccccc
Confidence 4567888898888 8888873222222221 2223777877774 45555554 599999999765433311
Q ss_pred -------cccccceeEEE-EEEcCCceEEEEEeCCCeEEEEeCCCC-----eEEEEecccccCeEEEEEeCCCcEEEEEe
Q 047355 184 -------DAHEKGINCID-YFITSDKVYLITGSDDFTVKVWDYETK-----TCVQILEGHTNNVTAVCFHPELRIIITAS 250 (312)
Q Consensus 184 -------~~~~~~v~~~~-~~~~~~~~~l~sg~~dg~i~vwd~~~~-----~~~~~~~~h~~~i~~l~~~~~~~~l~s~s 250 (312)
.....++...+ ........+++.+ ....|.+|..... +..+.+. -.+.+.+++|.+ ..++.|.
T Consensus 80 ~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~~--~~i~v~~ 155 (275)
T PF00780_consen 80 SRSLPTKLPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFLG--NKICVGT 155 (275)
T ss_pred cccccccccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEeC--CEEEEEe
Confidence 01112333332 1112233444444 4558888876542 3444444 346789999984 5577776
Q ss_pred CCCcEEEEeCCCccee
Q 047355 251 EDGTILIWNATTFRLQ 266 (312)
Q Consensus 251 ~dg~v~iwd~~~~~~~ 266 (312)
.+ ...+.|+.++...
T Consensus 156 ~~-~f~~idl~~~~~~ 170 (275)
T PF00780_consen 156 SK-GFYLIDLNTGSPS 170 (275)
T ss_pred CC-ceEEEecCCCCce
Confidence 54 4677888876543
No 387
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.98 E-value=0.72 Score=37.92 Aligned_cols=248 Identities=16% Similarity=0.215 Sum_probs=130.8
Q ss_pred cEEEEEEcCCCCe-EEEEecCCe-EEEEeccCCceeeeEEecCC--ceeEEEEeeCCcEEEEecCC-----CeEEEEEcc
Q 047355 19 RVKSVDFHPTQPW-VLASLYSGT-VCIWNYHSQTTEKSVKVTDS--PVRTAKFVAREHWIVCGSDD-----KFIRVFDYN 89 (312)
Q Consensus 19 ~i~~~~~~~~~~~-l~~~~~dg~-v~iw~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~g~~d-----g~i~iwd~~ 89 (312)
+-..|+|||..++ ++.+-.-|+ ..++|.+.......+...++ -.-...|++++.+|++--+| |.|-+||..
T Consensus 69 R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r 148 (366)
T COG3490 69 RGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAR 148 (366)
T ss_pred ccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecc
Confidence 4455667776543 333444454 35777776655554433222 23345799999999876544 789999986
Q ss_pred Cc-eeeeeecccccceeEEEEecCCCEEEEEeCCCcEEEE-eCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeCCC
Q 047355 90 TM-ASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLW-DWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDG 167 (312)
Q Consensus 90 ~~-~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iw-d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg 167 (312)
.. ..+-++..|.-.-..+.+.++|+.++.+. |-|..- |....+.. +. +..-
T Consensus 149 ~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan--GGIethpdfgR~~lN---ld----------------------sMeP 201 (366)
T COG3490 149 EGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN--GGIETHPDFGRTELN---LD----------------------SMEP 201 (366)
T ss_pred cccceecccccCCcCcceeEEecCCcEEEEeC--CceecccccCccccc---hh----------------------hcCc
Confidence 43 45667777776677788899999887664 444433 21111000 00 0111
Q ss_pred eEEEEEcCCCccee--eec--ccccceeEEEEEEcCCceEEEEEeCCCe-----EEEEeCCCCeEEEEec-------ccc
Q 047355 168 TIQIWNMDSSAAKF--TLD--AHEKGINCIDYFITSDKVYLITGSDDFT-----VKVWDYETKTCVQILE-------GHT 231 (312)
Q Consensus 168 ~v~iwd~~~~~~~~--~~~--~~~~~v~~~~~~~~~~~~~l~sg~~dg~-----i~vwd~~~~~~~~~~~-------~h~ 231 (312)
++.+.|..++..+. ++. .+...+.-++ ..+||...+.+-..|. -.|=....++.+..+. ...
T Consensus 202 Slvlld~atG~liekh~Lp~~l~~lSiRHld--~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~a 279 (366)
T COG3490 202 SLVLLDAATGNLIEKHTLPASLRQLSIRHLD--IGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFA 279 (366)
T ss_pred cEEEEeccccchhhhccCchhhhhcceeeee--eCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHH
Confidence 12233322222221 122 2223334333 2344443332211111 0011111222232222 123
Q ss_pred cCeEEEEEeCCCcEEEEEe-CCCcEEEEeCCCcceeeecccCccceEEEEEecCCCeEEEEecCCeEEE
Q 047355 232 NNVTAVCFHPELRIIITAS-EDGTILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGCDNGTLIV 299 (312)
Q Consensus 232 ~~i~~l~~~~~~~~l~s~s-~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~v 299 (312)
..|-+|+.+.+..+++..+ ..+...+||..++++..... +.. +.+..+...-++..+.+|.++.
T Consensus 280 nYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~--l~d--aaGva~~~~gf~vssg~G~~~~ 344 (366)
T COG3490 280 NYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAA--LPD--AAGVAAAKGGFAVSSGQGRIIF 344 (366)
T ss_pred hhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEeccc--ccc--cccceeccCceEEecCCceEEe
Confidence 4578889887666655444 55678899999988765422 222 3334566778888888888873
No 388
>PHA03098 kelch-like protein; Provisional
Probab=95.93 E-value=1.2 Score=41.10 Aligned_cols=63 Identities=10% Similarity=0.044 Sum_probs=30.7
Q ss_pred eCCcEEEEecCC-----CeEEEEEccCceeeeeecc--cccceeEEEEecCCCEEEEEeCC------CcEEEEeCCCC
Q 047355 69 AREHWIVCGSDD-----KFIRVFDYNTMASVKEFEA--HEDYIRSLAVHPTFPFVLTASDD------KLIKLWDWEKN 133 (312)
Q Consensus 69 ~~~~~l~~g~~d-----g~i~iwd~~~~~~~~~~~~--h~~~i~~~~~~~~~~~l~t~s~d------~~v~iwd~~~~ 133 (312)
-++...+.|+.+ ..+..||..+.. ...... +...-.+++. -++.+.+.||.+ ..+..||..+.
T Consensus 341 ~~~~lyv~GG~~~~~~~~~v~~yd~~~~~-W~~~~~lp~~r~~~~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~ 416 (534)
T PHA03098 341 FNNRIYVIGGIYNSISLNTVESWKPGESK-WREEPPLIFPRYNPCVVN-VNNLIYVIGGISKNDELLKTVECFSLNTN 416 (534)
T ss_pred ECCEEEEEeCCCCCEecceEEEEcCCCCc-eeeCCCcCcCCccceEEE-ECCEEEEECCcCCCCcccceEEEEeCCCC
Confidence 356666677754 346677766542 111111 0011112222 245666677632 35777886543
No 389
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=95.72 E-value=1.3 Score=39.01 Aligned_cols=89 Identities=13% Similarity=0.196 Sum_probs=57.1
Q ss_pred EEEEcCCCCeEEEEecCCeEEE---EeccC-C----ceeeeEE--ecC---CceeEEEEee-----------CCcEEEEe
Q 047355 22 SVDFHPTQPWVLASLYSGTVCI---WNYHS-Q----TTEKSVK--VTD---SPVRTAKFVA-----------REHWIVCG 77 (312)
Q Consensus 22 ~~~~~~~~~~l~~~~~dg~v~i---w~~~~-~----~~~~~~~--~~~---~~v~~~~~~~-----------~~~~l~~g 77 (312)
.++.+|++..|+.+..+.-+.+ |+... . ....... ... ..|+++.+.| |...++.|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 4577899999998877766554 54321 1 1111111 111 3577776654 24568899
Q ss_pred cCCCeEEEEEccCceeeeeecccccceeEEEEec
Q 047355 78 SDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHP 111 (312)
Q Consensus 78 ~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~ 111 (312)
..+|.|++|.. ++..+....-|.++|..+....
T Consensus 86 ~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~~~ 118 (415)
T PF14655_consen 86 TSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKCRS 118 (415)
T ss_pred ecccEEEEEec-cchHHHHHhcCccceEEEEecc
Confidence 99999999975 4555555567888888887653
No 390
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=95.65 E-value=1.5 Score=38.99 Aligned_cols=194 Identities=14% Similarity=0.163 Sum_probs=100.9
Q ss_pred EEEEeeCCcEEEEe-cC----CCeEEEEEccCceeeeeecccccceeEEEEecCCCEEEEEeCCC-----------cEEE
Q 047355 64 TAKFVAREHWIVCG-SD----DKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDK-----------LIKL 127 (312)
Q Consensus 64 ~~~~~~~~~~l~~g-~~----dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~-----------~v~i 127 (312)
...++|++++++-+ +. ...++++|+++++.+...-.. ..-..+.|.++++.++....+. .|+.
T Consensus 128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~ 206 (414)
T PF02897_consen 128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYR 206 (414)
T ss_dssp EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEE
T ss_pred eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc-cccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEE
Confidence 45677899987743 22 346999999998765432111 1123399999988776655433 2677
Q ss_pred EeCCCCcee-eeEecCCccc--eEEEEeCCCCCCEEEEEeCC---CeEEEEEcCCC----cceeeeccccccee-EEEEE
Q 047355 128 WDWEKNWEC-TQTFEGHSHY--VMQSAFNPKDLNTFASASLD---GTIQIWNMDSS----AAKFTLDAHEKGIN-CIDYF 196 (312)
Q Consensus 128 wd~~~~~~~-~~~~~~~~~~--v~~~~~~~~~~~~~~s~s~d---g~v~iwd~~~~----~~~~~~~~~~~~v~-~~~~~ 196 (312)
|.+.+.... ...++..... ...+..++.+.-+++..... ..+.+.|+... .....+.....++. .+..
T Consensus 207 ~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~- 285 (414)
T PF02897_consen 207 HKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDH- 285 (414)
T ss_dssp EETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEE-
T ss_pred EECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEc-
Confidence 777654332 2344443332 45666676443334444333 34788888764 22223333333332 2221
Q ss_pred EcCCceEEEEE--eCCCeEEEEeCCCCe---EEEEecccccC--eEEEEEeCCCcEEEEEeCCC--cEEEEeCC
Q 047355 197 ITSDKVYLITG--SDDFTVKVWDYETKT---CVQILEGHTNN--VTAVCFHPELRIIITASEDG--TILIWNAT 261 (312)
Q Consensus 197 ~~~~~~~l~sg--~~dg~i~vwd~~~~~---~~~~~~~h~~~--i~~l~~~~~~~~l~s~s~dg--~v~iwd~~ 261 (312)
..+..++.+- ..++.|...++.... ....+..|... +..+.... ..+++.-..++ .|+++++.
T Consensus 286 -~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~-~~Lvl~~~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 286 -HGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFK-DYLVLSYRENGSSRLRVYDLD 357 (414)
T ss_dssp -ETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEET-TEEEEEEEETTEEEEEEEETT
T ss_pred -cCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEEC-CEEEEEEEECCccEEEEEECC
Confidence 2222333342 234667777776554 23345556553 55555433 34566666665 58888988
No 391
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.60 E-value=1.5 Score=38.87 Aligned_cols=210 Identities=13% Similarity=0.040 Sum_probs=101.8
Q ss_pred EEEEcCCCCeEEEEecC-----------CeEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEecCCCeEEEEEccC
Q 047355 22 SVDFHPTQPWVLASLYS-----------GTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNT 90 (312)
Q Consensus 22 ~~~~~~~~~~l~~~~~d-----------g~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~ 90 (312)
.++..|.|--+|..-.+ ..|+||+... +.+.++.-..+.+..+.|..+ +.|++-..||.+++||+..
T Consensus 33 ~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~sG-~ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G 110 (410)
T PF04841_consen 33 IVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSSG-KLLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLFG 110 (410)
T ss_pred eEEEcCCCceEEEEecCcccccccCCCCcEEEEECCCC-CEeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCCC
Confidence 34556655555544333 1588888754 455566555578888889875 4566777999999999864
Q ss_pred ce------eeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEec---C-----CccceE--EEEeCC
Q 047355 91 MA------SVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFE---G-----HSHYVM--QSAFNP 154 (312)
Q Consensus 91 ~~------~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~---~-----~~~~v~--~~~~~~ 154 (312)
.. ........+..+....+..+|-.++++ ++.+.+-+-.......+.+. . +..... ...+..
T Consensus 111 ~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~--~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~ 188 (410)
T PF04841_consen 111 EFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTG--NNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSS 188 (410)
T ss_pred ceeechhhhccccCcccccccccccCCCCEEEECC--CCeEEEEeCccccchhhccccCCCcccccccccccccceEeec
Confidence 33 011111111222222333344333333 34343332111100000000 0 000000 011221
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCcceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEeccc-ccC
Q 047355 155 KDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGH-TNN 233 (312)
Q Consensus 155 ~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h-~~~ 233 (312)
+....+....++.+.+.+-..... +.. ..++..+ .++|+++++|.-..+|.+.+.+..-.+.+..+... ...
T Consensus 189 -~~~~~i~~~~g~~i~~i~~~~~~~---i~~-~~~i~~i--avSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~ 261 (410)
T PF04841_consen 189 -DRVVEILLANGETIYIIDENSFKQ---IDS-DGPIIKI--AVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSP 261 (410)
T ss_pred -CcceEEEEecCCEEEEEEcccccc---ccC-CCCeEEE--EECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCC
Confidence 223334444445555333322111 111 2344444 46899999999999999999876544444444332 234
Q ss_pred eEEEEEeCC
Q 047355 234 VTAVCFHPE 242 (312)
Q Consensus 234 i~~l~~~~~ 242 (312)
...+.|.-+
T Consensus 262 p~~~~WCG~ 270 (410)
T PF04841_consen 262 PKQMAWCGN 270 (410)
T ss_pred CcEEEEECC
Confidence 456666554
No 392
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=95.52 E-value=1.2 Score=37.09 Aligned_cols=220 Identities=15% Similarity=0.161 Sum_probs=124.3
Q ss_pred eEEEEeeCCcEEEEecCCCeEEEEEccC------cee-eeeecc-----cccceeEEEEecCCCE------------EEE
Q 047355 63 RTAKFVAREHWIVCGSDDKFIRVFDYNT------MAS-VKEFEA-----HEDYIRSLAVHPTFPF------------VLT 118 (312)
Q Consensus 63 ~~~~~~~~~~~l~~g~~dg~i~iwd~~~------~~~-~~~~~~-----h~~~i~~~~~~~~~~~------------l~t 118 (312)
..++|+|.+.+-++....+...+||... ... .-.+.. .....+.+.|+....+ ++.
T Consensus 26 WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fif 105 (336)
T TIGR03118 26 WGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFLF 105 (336)
T ss_pred ceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEEE
Confidence 4567888887777777778999998861 111 112221 1234666777654333 577
Q ss_pred EeCCCcEEEEeCCCCce----eeeEecCC-ccceE-EEEe--CCCCCCEEEEEeCCCeEEEEEcCCCccee--e-----e
Q 047355 119 ASDDKLIKLWDWEKNWE----CTQTFEGH-SHYVM-QSAF--NPKDLNTFASASLDGTIQIWNMDSSAAKF--T-----L 183 (312)
Q Consensus 119 ~s~d~~v~iwd~~~~~~----~~~~~~~~-~~~v~-~~~~--~~~~~~~~~s~s~dg~v~iwd~~~~~~~~--~-----~ 183 (312)
+++||+|.=|...-... ....+... ...+. .++. ...+..+.++-..+++|.+||-.-.+... . +
T Consensus 106 ~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~i 185 (336)
T TIGR03118 106 VTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPAL 185 (336)
T ss_pred EeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCCC
Confidence 88999999998432211 11112111 12221 2222 22233455666778999999864322110 0 1
Q ss_pred cccccceeE--------EEE-EEcCCceEEEEEeCCCeEEEEeCCCCeEEEEec--ccccCeEEEEEeC------CCcEE
Q 047355 184 DAHEKGINC--------IDY-FITSDKVYLITGSDDFTVKVWDYETKTCVQILE--GHTNNVTAVCFHP------ELRII 246 (312)
Q Consensus 184 ~~~~~~v~~--------~~~-~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~--~h~~~i~~l~~~~------~~~~l 246 (312)
.+.-.+.+. +.| ...+++..-+.|..-|.|.+||.. +++++.+. +.-..-+.|+..| .+.+|
T Consensus 186 PagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lL 264 (336)
T TIGR03118 186 PAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSLSGALL 264 (336)
T ss_pred CCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCCCCCeE
Confidence 111111110 011 112233334456667899999985 66776663 2223456777755 45677
Q ss_pred EEEeCCCcEEEEeCCCcceeeecccCc------cceEEEEEec
Q 047355 247 ITASEDGTILIWNATTFRLQNTLSSGL------ERVWSIGYKK 283 (312)
Q Consensus 247 ~s~s~dg~v~iwd~~~~~~~~~~~~~~------~~v~~~~~~~ 283 (312)
+--=.||+|..||..+++....+.... +.+|.++|..
T Consensus 265 VGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 265 VGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred EeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 777789999999998888766666543 4589999966
No 393
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=95.18 E-value=1.9 Score=37.40 Aligned_cols=180 Identities=16% Similarity=0.124 Sum_probs=81.3
Q ss_pred EEecCCCEEEEE-eCCCcEEEE--eCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeCCCeEEEEEcCCCcceeeec
Q 047355 108 AVHPTFPFVLTA-SDDKLIKLW--DWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLD 184 (312)
Q Consensus 108 ~~~~~~~~l~t~-s~d~~v~iw--d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~ 184 (312)
+|.++|+.|+.+ ..||.-.+| |+.+. +..+.-.+..........+|.+ ..++-.-....|+-.|+++.+......
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~-~i~QLTdg~g~~~~g~~~s~~~-~~~~Yv~~~~~l~~vdL~T~e~~~vy~ 119 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATG-EITQLTDGPGDNTFGGFLSPDD-RALYYVKNGRSLRRVDLDTLEERVVYE 119 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT--EEEE---SS-B-TTT-EE-TTS-SEEEEEETTTEEEEEETTT--EEEEEE
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccC-EEEECccCCCCCccceEEecCC-CeEEEEECCCeEEEEECCcCcEEEEEE
Confidence 566788766654 446665555 55544 2222222111111123445654 455444455688999999887665555
Q ss_pred ccccceeEEEEEEcCCceEEEEEeC----------------------CCeEEEEeCCCCeEEEEecccccCeEEEEEeCC
Q 047355 185 AHEKGINCIDYFITSDKVYLITGSD----------------------DFTVKVWDYETKTCVQILEGHTNNVTAVCFHPE 242 (312)
Q Consensus 185 ~~~~~v~~~~~~~~~~~~~l~sg~~----------------------dg~i~vwd~~~~~~~~~~~~h~~~i~~l~~~~~ 242 (312)
.....+....+....++..++..-. .+.|.-.|+.+++....+. -...+..+.|+|.
T Consensus 120 ~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~ 198 (386)
T PF14583_consen 120 VPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPT 198 (386)
T ss_dssp --TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEEEEETT
T ss_pred CCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCcccCCC
Confidence 5555554455555667766543211 2335666777777655554 4567889999996
Q ss_pred CcEEEEEeC----CCc-EEEEeCCC-cceeeecccC--ccceEEEEEecCCCeEEE
Q 047355 243 LRIIITASE----DGT-ILIWNATT-FRLQNTLSSG--LERVWSIGYKKGSNQVAF 290 (312)
Q Consensus 243 ~~~l~s~s~----dg~-v~iwd~~~-~~~~~~~~~~--~~~v~~~~~~~~~~~l~~ 290 (312)
...+++=+. +.. -|||-+.+ +.....+..+ .+.+..==|.|||+.|..
T Consensus 199 dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y 254 (386)
T PF14583_consen 199 DPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWY 254 (386)
T ss_dssp EEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEE
T ss_pred CCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEE
Confidence 554444332 321 36674432 1111111111 222333336777777665
No 394
>PHA03098 kelch-like protein; Provisional
Probab=94.97 E-value=3 Score=38.49 Aligned_cols=183 Identities=11% Similarity=0.105 Sum_probs=82.1
Q ss_pred eeCCcEEEEecCCC------eEEEEEccCceeeeeecc---cccceeEEEEecCCCEEEEEeCCC-----cEEEEeCCCC
Q 047355 68 VAREHWIVCGSDDK------FIRVFDYNTMASVKEFEA---HEDYIRSLAVHPTFPFVLTASDDK-----LIKLWDWEKN 133 (312)
Q Consensus 68 ~~~~~~l~~g~~dg------~i~iwd~~~~~~~~~~~~---h~~~i~~~~~~~~~~~l~t~s~d~-----~v~iwd~~~~ 133 (312)
..++..++.|+.++ .+..||..+..- ..+.. ..... +++. -++.+.+.||.++ .+..||..++
T Consensus 292 ~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W-~~~~~~~~~R~~~-~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~~ 368 (534)
T PHA03098 292 VLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSW-NKVPELIYPRKNP-GVTV-FNNRIYVIGGIYNSISLNTVESWKPGES 368 (534)
T ss_pred EECCEEEEECCCcCCCCeeccEEEEeCCCCee-eECCCCCcccccc-eEEE-ECCEEEEEeCCCCCEecceEEEEcCCCC
Confidence 34455666666542 467777766432 22211 11111 2222 2466677787652 4666776543
Q ss_pred ceee-eEecCCccceEEEEeCCCCCCEEEEEeCC------CeEEEEEcCCCcceee--ecccccceeEEEEEEcCCceEE
Q 047355 134 WECT-QTFEGHSHYVMQSAFNPKDLNTFASASLD------GTIQIWNMDSSAAKFT--LDAHEKGINCIDYFITSDKVYL 204 (312)
Q Consensus 134 ~~~~-~~~~~~~~~v~~~~~~~~~~~~~~s~s~d------g~v~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~l 204 (312)
.... ..+. +...-..+... ++..++.|+.+ ..+..||..+.+-... +....... +.. . .++.++
T Consensus 369 ~W~~~~~lp-~~r~~~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-~~~--~-~~~~iy 441 (534)
T PHA03098 369 KWREEPPLI-FPRYNPCVVNV--NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGG-CAI--Y-HDGKIY 441 (534)
T ss_pred ceeeCCCcC-cCCccceEEEE--CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCc-eEE--E-ECCEEE
Confidence 2110 0000 00000111111 33556666532 3578888876532211 11111111 111 1 244555
Q ss_pred EEEeCC--------CeEEEEeCCCCeEEEE--ecccccCeEEEEEeCCCcEEEEEeCC-----CcEEEEeCCC
Q 047355 205 ITGSDD--------FTVKVWDYETKTCVQI--LEGHTNNVTAVCFHPELRIIITASED-----GTILIWNATT 262 (312)
Q Consensus 205 ~sg~~d--------g~i~vwd~~~~~~~~~--~~~h~~~i~~l~~~~~~~~l~s~s~d-----g~v~iwd~~~ 262 (312)
+.|+.+ ..+..||.++.+.... +.........+. .++++++.|+.+ ..+.++|..+
T Consensus 442 v~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~ 512 (534)
T PHA03098 442 VIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI--FNNKIYVVGGDKYEYYINEIEVYDDKT 512 (534)
T ss_pred EECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE--ECCEEEEEcCCcCCcccceeEEEeCCC
Confidence 666543 2388899877654332 111111112222 266777777754 4677787665
No 395
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=94.96 E-value=2.4 Score=37.34 Aligned_cols=202 Identities=14% Similarity=0.236 Sum_probs=90.4
Q ss_pred CcEEEEEEc-----------CCCCeEEEEe-cCCeEEEEeccC----CceeeeEEe---cC----CceeEEEEeeCCcEE
Q 047355 18 DRVKSVDFH-----------PTQPWVLASL-YSGTVCIWNYHS----QTTEKSVKV---TD----SPVRTAKFVAREHWI 74 (312)
Q Consensus 18 ~~i~~~~~~-----------~~~~~l~~~~-~dg~v~iw~~~~----~~~~~~~~~---~~----~~v~~~~~~~~~~~l 74 (312)
++....-|+ .+.++|+..+ ..++|.|.|..+ .+..+.+.. .. ..-.++-..++++.+
T Consensus 65 DElHH~GWNaCSsc~~~~~~~~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~im 144 (461)
T PF05694_consen 65 DELHHSGWNACSSCHYGDPSKERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIM 144 (461)
T ss_dssp --B---EES--GGSTT--TT--S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EE
T ss_pred CccccccCcccccccCCCCcccCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEE
Confidence 566777776 2356777655 778999999863 223333321 10 111223344678777
Q ss_pred EEecC------CCeEEEEEccCceeeeeeccc---ccceeEEEEecCCCEEEEEeC--------------------CCcE
Q 047355 75 VCGSD------DKFIRVFDYNTMASVKEFEAH---EDYIRSLAVHPTFPFVLTASD--------------------DKLI 125 (312)
Q Consensus 75 ~~g~~------dg~i~iwd~~~~~~~~~~~~h---~~~i~~~~~~~~~~~l~t~s~--------------------d~~v 125 (312)
+++-. -|-+.++|-++.+.....+.. ...-..+-++|..+.++|..+ ..++
T Consensus 145 IS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l 224 (461)
T PF05694_consen 145 ISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSL 224 (461)
T ss_dssp EEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EE
T ss_pred EEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeE
Confidence 76432 256888888887766666543 234567778888887777653 4689
Q ss_pred EEEeCCCCceeeeEecCCc--cceEEEEe--CCCCCCEEEEEeCCCeEEEEEcC-CCc----ceeeeccc--------c-
Q 047355 126 KLWDWEKNWECTQTFEGHS--HYVMQSAF--NPKDLNTFASASLDGTIQIWNMD-SSA----AKFTLDAH--------E- 187 (312)
Q Consensus 126 ~iwd~~~~~~~~~~~~~~~--~~v~~~~~--~~~~~~~~~s~s~dg~v~iwd~~-~~~----~~~~~~~~--------~- 187 (312)
.+||+... +..+++.-.. .....+.| +|....-|+.+...++|..|--. .+. .+..+... .
T Consensus 225 ~vWD~~~r-~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~m 303 (461)
T PF05694_consen 225 HVWDWSTR-KLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEM 303 (461)
T ss_dssp EEEETTTT-EEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GG
T ss_pred EEEECCCC-cEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCccccccc
Confidence 99999876 4455543222 23344444 56555567777777777666542 221 11122111 0
Q ss_pred ----c--ceeEEEEEEcCCceEEEEEe-CCCeEEEEeCCC
Q 047355 188 ----K--GINCIDYFITSDKVYLITGS-DDFTVKVWDYET 220 (312)
Q Consensus 188 ----~--~v~~~~~~~~~~~~~l~sg~-~dg~i~vwd~~~ 220 (312)
. +-.-.++.++.|.++|.... ..|.|+.||+..
T Consensus 304 l~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISD 343 (461)
T PF05694_consen 304 LKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISD 343 (461)
T ss_dssp GGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SS
T ss_pred ccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCC
Confidence 0 11123455677777766544 799999999865
No 396
>PHA02790 Kelch-like protein; Provisional
Probab=94.44 E-value=3.8 Score=37.28 Aligned_cols=179 Identities=9% Similarity=0.037 Sum_probs=79.5
Q ss_pred CCcEEEEecCC-----CeEEEEEccCcee--eeeecccccceeEEEEecCCCEEEEEeCC--CcEEEEeCCCCcee-eeE
Q 047355 70 REHWIVCGSDD-----KFIRVFDYNTMAS--VKEFEAHEDYIRSLAVHPTFPFVLTASDD--KLIKLWDWEKNWEC-TQT 139 (312)
Q Consensus 70 ~~~~l~~g~~d-----g~i~iwd~~~~~~--~~~~~~h~~~i~~~~~~~~~~~l~t~s~d--~~v~iwd~~~~~~~-~~~ 139 (312)
++..++.|+.+ ..+..||..+..- +..+...... .+++ .-++.+.+.||.+ ..+..||...+... ...
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~-~~~v-~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~ 348 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLY-ASGV-PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS 348 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhc-ceEE-EECCEEEEECCcCCCCceEEEECCCCeEEECCC
Confidence 34555666654 2566777765431 1111111111 1222 2356666777754 35777876443111 111
Q ss_pred ecCCccceEEEEeCCCCCCEEEEEeCCC---eEEEEEcCCCcceee--ecccccceeEEEEEEcCCceEEEEEeCCCeEE
Q 047355 140 FEGHSHYVMQSAFNPKDLNTFASASLDG---TIQIWNMDSSAAKFT--LDAHEKGINCIDYFITSDKVYLITGSDDFTVK 214 (312)
Q Consensus 140 ~~~~~~~v~~~~~~~~~~~~~~s~s~dg---~v~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~ 214 (312)
+.........+.. ++.+.+.|+.++ ++..||.++..-... +...... .+.. .-++.+.+.|+ .+.
T Consensus 349 l~~~r~~~~~~~~---~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~-~~~~---~~~~~IYv~GG---~~e 418 (480)
T PHA02790 349 LLKPRCNPAVASI---NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYK-SCAL---VFGRRLFLVGR---NAE 418 (480)
T ss_pred CCCCCcccEEEEE---CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcccc-ceEE---EECCEEEEECC---ceE
Confidence 1100111111122 335566666543 466788765432211 1111111 1111 22456666663 577
Q ss_pred EEeCCCCeEEEE--ecccccCeEEEEEeCCCcEEEEEeCC-----CcEEEEeCCC
Q 047355 215 VWDYETKTCVQI--LEGHTNNVTAVCFHPELRIIITASED-----GTILIWNATT 262 (312)
Q Consensus 215 vwd~~~~~~~~~--~~~h~~~i~~l~~~~~~~~l~s~s~d-----g~v~iwd~~~ 262 (312)
+||.++.+-... +.........+. -++++.+.||.+ ..+..||..+
T Consensus 419 ~ydp~~~~W~~~~~m~~~r~~~~~~v--~~~~IYviGG~~~~~~~~~ve~Yd~~~ 471 (480)
T PHA02790 419 FYCESSNTWTLIDDPIYPRDNPELII--VDNKLLLIGGFYRGSYIDTIEVYNNRT 471 (480)
T ss_pred EecCCCCcEeEcCCCCCCccccEEEE--ECCEEEEECCcCCCcccceEEEEECCC
Confidence 898876654332 221122222222 356788888764 2355555543
No 397
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.42 E-value=2.7 Score=35.49 Aligned_cols=102 Identities=19% Similarity=0.246 Sum_probs=54.3
Q ss_pred EEcCCceEEEEEeCCCeEEEEeCCCCeEEEEecccccCeEEEEEeCCCcEEEEEeCCCcEEEEeC-CCcceeee----cc
Q 047355 196 FITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITASEDGTILIWNA-TTFRLQNT----LS 270 (312)
Q Consensus 196 ~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~s~dg~v~iwd~-~~~~~~~~----~~ 270 (312)
...+++.++++++.-....-||-....-...-+.-...|.++.|.|++.+.+.+ ..|.|+.=+. ...+.... ..
T Consensus 151 ~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~ 229 (302)
T PF14870_consen 151 TRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIK 229 (302)
T ss_dssp EE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTS
T ss_pred EECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcc
Confidence 357889988877655556678764332232233345789999999998765544 7888888772 22222221 22
Q ss_pred cCccceEEEEEecCCCeEEEEecCCeEEE
Q 047355 271 SGLERVWSIGYKKGSNQVAFGCDNGTLIV 299 (312)
Q Consensus 271 ~~~~~v~~~~~~~~~~~l~~~~~~g~i~v 299 (312)
.....+..++|.++....++|+. |++.+
T Consensus 230 ~~~~~~ld~a~~~~~~~wa~gg~-G~l~~ 257 (302)
T PF14870_consen 230 TNGYGILDLAYRPPNEIWAVGGS-GTLLV 257 (302)
T ss_dssp S--S-EEEEEESSSS-EEEEEST-T-EEE
T ss_pred cCceeeEEEEecCCCCEEEEeCC-ccEEE
Confidence 23345889999988777765544 45443
No 398
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=94.38 E-value=3 Score=35.86 Aligned_cols=57 Identities=16% Similarity=0.229 Sum_probs=38.4
Q ss_pred CceEEEEEeCCCeEEEEeCCCCeEE----EEecccccCeEEEEEeCCCcEEEEEeCCCcEE
Q 047355 200 DKVYLITGSDDFTVKVWDYETKTCV----QILEGHTNNVTAVCFHPELRIIITASEDGTIL 256 (312)
Q Consensus 200 ~~~~l~sg~~dg~i~vwd~~~~~~~----~~~~~h~~~i~~l~~~~~~~~l~s~s~dg~v~ 256 (312)
.+.++++.-..+.|....+.....+ ..+......+..+++.|||.++++-..+|.|.
T Consensus 270 ~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 270 RGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp TTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred cCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 4567777766778887777644322 22334455799999999999888888888874
No 399
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.29 E-value=2.2 Score=42.33 Aligned_cols=31 Identities=19% Similarity=0.338 Sum_probs=26.7
Q ss_pred CcEEEEEEcCCCCeEEEEecCCeEEEEeccC
Q 047355 18 DRVKSVDFHPTQPWVLASLYSGTVCIWNYHS 48 (312)
Q Consensus 18 ~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~ 48 (312)
.....++|+|....++.+...|.|+++-...
T Consensus 36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~ 66 (993)
T KOG1983|consen 36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPG 66 (993)
T ss_pred CCCcceeeccccceEEEEEecccEEEecccc
Confidence 4567889999999999999999999996543
No 400
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.29 E-value=0.94 Score=44.20 Aligned_cols=130 Identities=14% Similarity=0.156 Sum_probs=75.6
Q ss_pred EEEEeCCCeEEEEEcCCCccee-----eeccc----ccceeEEEEEEcCC-ceEEEEEeCCCeEEEEeCCCCeEEEEecc
Q 047355 160 FASASLDGTIQIWNMDSSAAKF-----TLDAH----EKGINCIDYFITSD-KVYLITGSDDFTVKVWDYETKTCVQILEG 229 (312)
Q Consensus 160 ~~s~s~dg~v~iwd~~~~~~~~-----~~~~~----~~~v~~~~~~~~~~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~~ 229 (312)
++..+.+..|..||+++-.... -+..| ..++..++..+.|. ....+....|+.|+|..+........--.
T Consensus 117 v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p 196 (1405)
T KOG3630|consen 117 VVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFP 196 (1405)
T ss_pred EEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhcccC
Confidence 3334445578999997532211 11111 22222222222221 22356677888898887653322211112
Q ss_pred cccCeEEEEEeCCCcEEEEEeCCCcEEEEeCCCcceeeeccc----CccceEEEEEecCCCeEEE
Q 047355 230 HTNNVTAVCFHPELRIIITASEDGTILIWNATTFRLQNTLSS----GLERVWSIGYKKGSNQVAF 290 (312)
Q Consensus 230 h~~~i~~l~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~ 290 (312)
.....++++|+|.|+.++.|-..|++.-|.. +.+....+.. ...+|.+|.|-..-..+++
T Consensus 197 ~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 197 VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred cccceeeEEeccccceeeEecCCCeEEEeec-ccceeecccCCCcCCCcceeEEEEecceeEEEE
Confidence 3556899999999999999999999988864 3333222222 1467899998777666654
No 401
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.17 E-value=1.4 Score=40.90 Aligned_cols=94 Identities=11% Similarity=0.261 Sum_probs=66.1
Q ss_pred CCCeEEEEEcCCCcceeeec-ccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCC---------CCeEEEE--ecccc-
Q 047355 165 LDGTIQIWNMDSSAAKFTLD-AHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYE---------TKTCVQI--LEGHT- 231 (312)
Q Consensus 165 ~dg~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~---------~~~~~~~--~~~h~- 231 (312)
...++.|||.+......... .....|..++|...+++..+++-+....|.+|--. +..+++. +..|+
T Consensus 49 ~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~ 128 (631)
T PF12234_consen 49 SRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTP 128 (631)
T ss_pred CCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEeecCCC
Confidence 34579999998876443322 34577899999999999999999999999998531 1122222 23444
Q ss_pred cCeEEEEEeCCCcEEEEEeCCCcEEEEeC
Q 047355 232 NNVTAVCFHPELRIIITASEDGTILIWNA 260 (312)
Q Consensus 232 ~~i~~l~~~~~~~~l~s~s~dg~v~iwd~ 260 (312)
.+|....|.++|..++.++ +.+.|+|-
T Consensus 129 h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 129 HPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred CCccceeEecCCeEEEEeC--CEEEEECC
Confidence 5799999999987655444 56777763
No 402
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=94.15 E-value=3.1 Score=35.24 Aligned_cols=217 Identities=10% Similarity=0.071 Sum_probs=112.5
Q ss_pred EeeCCc-EEEEecCCCeEEEEEccCceeeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCce-eee-E-ecC
Q 047355 67 FVAREH-WIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWE-CTQ-T-FEG 142 (312)
Q Consensus 67 ~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~-~~~-~-~~~ 142 (312)
|.++.. .+.+--..+.|.-|+..+++. +.+... +.+.++..-..+..|+++.. .+.+++...... ... . ..+
T Consensus 32 w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~~p-~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~~ 107 (307)
T COG3386 32 WDPDRGALLWVDILGGRIHRLDPETGKK-RVFPSP-GGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPEDG 107 (307)
T ss_pred CcCCCCEEEEEeCCCCeEEEecCCcCce-EEEECC-CCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccccCC
Confidence 555554 334444567888888765432 233222 22344433333444544432 244555432211 110 0 011
Q ss_pred C-ccceEEEEeCCCCCCEEEEEeCC------------CeEEEEEcCCCcceeeecccccceeEEEEEEcCCc-eEEEEEe
Q 047355 143 H-SHYVMQSAFNPKDLNTFASASLD------------GTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDK-VYLITGS 208 (312)
Q Consensus 143 ~-~~~v~~~~~~~~~~~~~~s~s~d------------g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~sg~ 208 (312)
. ..........|.+ . +..+... |.|+.+|. .+.....+..+-...+.++ ++||+ .++++-+
T Consensus 108 ~~~~r~ND~~v~pdG-~-~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla--~SpDg~tly~aDT 182 (307)
T COG3386 108 LPLNRPNDGVVDPDG-R-IWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLA--FSPDGKTLYVADT 182 (307)
T ss_pred CCcCCCCceeEcCCC-C-EEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceE--ECCCCCEEEEEeC
Confidence 1 1223344445532 2 2222221 23444443 2333333333333445565 47777 4555666
Q ss_pred CCCeEEEEeCCC--C----eE-EEEecccccCeEEEEEeCCCcEEEEEeCCC-cEEEEeCCCcceeeecccCccceEEEE
Q 047355 209 DDFTVKVWDYET--K----TC-VQILEGHTNNVTAVCFHPELRIIITASEDG-TILIWNATTFRLQNTLSSGLERVWSIG 280 (312)
Q Consensus 209 ~dg~i~vwd~~~--~----~~-~~~~~~h~~~i~~l~~~~~~~~l~s~s~dg-~v~iwd~~~~~~~~~~~~~~~~v~~~~ 280 (312)
..+.|.-|++.. + +. ......+.+..-.++...++.+.+++-.+| .|.+|+.. ++++.+..-+...+.+++
T Consensus 183 ~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~ 261 (307)
T COG3386 183 PANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPA 261 (307)
T ss_pred CCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccce
Confidence 668888887641 1 11 122223345566788888888776555554 89999977 888888777778888999
Q ss_pred Ee-cCCCeEEEEec
Q 047355 281 YK-KGSNQVAFGCD 293 (312)
Q Consensus 281 ~~-~~~~~l~~~~~ 293 (312)
|. |+.+.|...+.
T Consensus 262 FgG~~~~~L~iTs~ 275 (307)
T COG3386 262 FGGPDLNTLYITSA 275 (307)
T ss_pred EeCCCcCEEEEEec
Confidence 96 56666655444
No 403
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.13 E-value=2.2 Score=40.71 Aligned_cols=25 Identities=4% Similarity=0.008 Sum_probs=18.5
Q ss_pred ceeEEEEeeCCcEEEEecCCCeEEE
Q 047355 61 PVRTAKFVAREHWIVCGSDDKFIRV 85 (312)
Q Consensus 61 ~v~~~~~~~~~~~l~~g~~dg~i~i 85 (312)
.|..+..+++|..++..+..|...+
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~v~V~ 110 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRGVVVL 110 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCcEEEE
Confidence 4677788889998888877665444
No 404
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.97 E-value=1.8 Score=42.46 Aligned_cols=144 Identities=13% Similarity=0.069 Sum_probs=87.7
Q ss_pred ceeEEEEecCCCE--EEEEeCCCcEEEEeCCCCcee----eeEe------cCCccceEEEEeCCCCCCEEEEEeCCCeEE
Q 047355 103 YIRSLAVHPTFPF--VLTASDDKLIKLWDWEKNWEC----TQTF------EGHSHYVMQSAFNPKDLNTFASASLDGTIQ 170 (312)
Q Consensus 103 ~i~~~~~~~~~~~--l~t~s~d~~v~iwd~~~~~~~----~~~~------~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~ 170 (312)
+|..+...++++. ++..+.+-.|..||++.-... ..-+ .........+.|+|.-...++++..|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 4566666777655 344455557899998642111 1111 112234566778887667788889999999
Q ss_pred EEEcCCCcceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEeccc----ccCeEEEEEeCCCcEE
Q 047355 171 IWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGH----TNNVTAVCFHPELRII 246 (312)
Q Consensus 171 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h----~~~i~~l~~~~~~~~l 246 (312)
+..+........-..-....+++. +++.|..++.|-..|++.-|-.. .+....+.+. ...|.+|+|-....++
T Consensus 182 V~~~~~~~~~v~s~p~t~~~Tav~--WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~efl 258 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFPVTNSQTAVL--WSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFL 258 (1405)
T ss_pred hhhhhhhhhhhcccCcccceeeEE--eccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEE
Confidence 887654322211112234456665 47889999999999999888653 2222222211 3469999998876666
Q ss_pred EEE
Q 047355 247 ITA 249 (312)
Q Consensus 247 ~s~ 249 (312)
+.-
T Consensus 259 vvy 261 (1405)
T KOG3630|consen 259 VVY 261 (1405)
T ss_pred EEe
Confidence 543
No 405
>PHA02790 Kelch-like protein; Provisional
Probab=93.85 E-value=5 Score=36.51 Aligned_cols=103 Identities=9% Similarity=-0.017 Sum_probs=46.5
Q ss_pred CCeEEEEecCC-----eEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEecCC--CeEEEEEccCce--eeeeecc
Q 047355 29 QPWVLASLYSG-----TVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDD--KFIRVFDYNTMA--SVKEFEA 99 (312)
Q Consensus 29 ~~~l~~~~~dg-----~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d--g~i~iwd~~~~~--~~~~~~~ 99 (312)
+...++||.++ ++..||....+....-.............-++...+.|+.+ ..+..||..+.. ....+..
T Consensus 272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~ 351 (480)
T PHA02790 272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLK 351 (480)
T ss_pred CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCCC
Confidence 34456676543 45567765543222111111111111223456666677653 457778765432 1111211
Q ss_pred cccceeEEEEecCCCEEEEEeCCC---cEEEEeCCCC
Q 047355 100 HEDYIRSLAVHPTFPFVLTASDDK---LIKLWDWEKN 133 (312)
Q Consensus 100 h~~~i~~~~~~~~~~~l~t~s~d~---~v~iwd~~~~ 133 (312)
.... .+++ .-++++.+.||.++ .+..||..++
T Consensus 352 ~r~~-~~~~-~~~g~IYviGG~~~~~~~ve~ydp~~~ 386 (480)
T PHA02790 352 PRCN-PAVA-SINNVIYVIGGHSETDTTTEYLLPNHD 386 (480)
T ss_pred CCcc-cEEE-EECCEEEEecCcCCCCccEEEEeCCCC
Confidence 1111 1122 23456667777553 4667876543
No 406
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=93.80 E-value=6.8 Score=37.81 Aligned_cols=195 Identities=10% Similarity=0.075 Sum_probs=105.0
Q ss_pred CCeEEEEecCCeEEEEeccCCceeeeEEecCC--------ceeEEEEee----------------CCcEEEEecCCCeEE
Q 047355 29 QPWVLASLYSGTVCIWNYHSQTTEKSVKVTDS--------PVRTAKFVA----------------REHWIVCGSDDKFIR 84 (312)
Q Consensus 29 ~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~--------~v~~~~~~~----------------~~~~l~~g~~dg~i~ 84 (312)
+..|+.++.++.|.-.|..+++.+-.+..... ..+.+.+.. .+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 55677777778777777777666544432211 012222221 245788899999999
Q ss_pred EEEccCceeeeeeccccccee-------------EEEEec--CCCEEEEEeC----------CCcEEEEeCCCCceeeeE
Q 047355 85 VFDYNTMASVKEFEAHEDYIR-------------SLAVHP--TFPFVLTASD----------DKLIKLWDWEKNWECTQT 139 (312)
Q Consensus 85 iwd~~~~~~~~~~~~h~~~i~-------------~~~~~~--~~~~l~t~s~----------d~~v~iwd~~~~~~~~~~ 139 (312)
..|.++++..-.+... +.|. .+.-.| .+..++.|+. +|.|+-+|.++....-..
T Consensus 274 ALDA~TGk~~W~fg~~-G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGNN-GTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecCC-CceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 9999998877655321 1110 011111 1335566643 578999998776432211
Q ss_pred ecCC----------------ccce-EEEEeCCCCCCEEEEEe------------------CCCeEEEEEcCCCcceeeec
Q 047355 140 FEGH----------------SHYV-MQSAFNPKDLNTFASAS------------------LDGTIQIWNMDSSAAKFTLD 184 (312)
Q Consensus 140 ~~~~----------------~~~v-~~~~~~~~~~~~~~s~s------------------~dg~v~iwd~~~~~~~~~~~ 184 (312)
..+. ...+ ....++|.. ++++.+. ..++|.-.|.++++.+..++
T Consensus 353 ~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~-glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q 431 (764)
T TIGR03074 353 DPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKL-GLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQ 431 (764)
T ss_pred ecCCCCcccCCCCCCEeccCCCCccCceEEcCCC-CeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEec
Confidence 1100 0000 112333322 2222211 23456777778887776554
Q ss_pred c--ccc-------ceeEEEEEEcCCc---eEEEEEeCCCeEEEEeCCCCeEEEE
Q 047355 185 A--HEK-------GINCIDYFITSDK---VYLITGSDDFTVKVWDYETKTCVQI 226 (312)
Q Consensus 185 ~--~~~-------~v~~~~~~~~~~~---~~l~sg~~dg~i~vwd~~~~~~~~~ 226 (312)
. |.. ...-+++. ..++ ..++.++.+|.+.+.|-++++.+..
T Consensus 432 ~~~hD~WD~D~~~~p~L~d~~-~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~ 484 (764)
T TIGR03074 432 TVHHDLWDMDVPAQPSLVDLP-DADGTTVPALVAPTKQGQIYVLDRRTGEPIVP 484 (764)
T ss_pred ccCCccccccccCCceEEeee-cCCCcEeeEEEEECCCCEEEEEECCCCCEEee
Confidence 3 211 11112221 1244 2788999999999999999987654
No 407
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.68 E-value=1.9 Score=40.06 Aligned_cols=108 Identities=12% Similarity=0.175 Sum_probs=69.7
Q ss_pred EEEEEEcCCCCeEEEEecCCeEEEEeccCCceeeeEE-ecCCceeEEEEe--eCCcEEEEecCCCeEEEEEcc-------
Q 047355 20 VKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVK-VTDSPVRTAKFV--AREHWIVCGSDDKFIRVFDYN------- 89 (312)
Q Consensus 20 i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~-~~~~~v~~~~~~--~~~~~l~~g~~dg~i~iwd~~------- 89 (312)
..-+.-+.-++..++-.....+.|||........... .....|..+.|. ++++.+++.+-.+.|.+|.-.
T Consensus 32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~ 111 (631)
T PF12234_consen 32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNK 111 (631)
T ss_pred cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcC
Confidence 3344444444444444445678999998766443332 235688888886 578889998899999998531
Q ss_pred --Cceeeeee--cccc-cceeEEEEecCCCEEEEEeCCCcEEEEe
Q 047355 90 --TMASVKEF--EAHE-DYIRSLAVHPTFPFVLTASDDKLIKLWD 129 (312)
Q Consensus 90 --~~~~~~~~--~~h~-~~i~~~~~~~~~~~l~t~s~d~~v~iwd 129 (312)
+...++++ ..|+ .+|.+..|.++|.+++.++ +.+.++|
T Consensus 112 ~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~d 154 (631)
T PF12234_consen 112 GPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFD 154 (631)
T ss_pred CcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEEC
Confidence 11223322 3444 5799999999997666444 5677876
No 408
>PRK10115 protease 2; Provisional
Probab=93.61 E-value=7 Score=37.37 Aligned_cols=237 Identities=10% Similarity=0.001 Sum_probs=112.7
Q ss_pred cEEEEEEcCCCCeEEEEecC-C----eEEEEeccCCceee-eEEecCCceeEEEEeeCCcEEEEecCC------CeEEEE
Q 047355 19 RVKSVDFHPTQPWVLASLYS-G----TVCIWNYHSQTTEK-SVKVTDSPVRTAKFVAREHWIVCGSDD------KFIRVF 86 (312)
Q Consensus 19 ~i~~~~~~~~~~~l~~~~~d-g----~v~iw~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~g~~d------g~i~iw 86 (312)
.+..+.++||+++|+.+... | .+++-|+.++..+. .+.. .-..+.|.++++.++-...+ ..|+.+
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~---~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN---VEPSFVWANDSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC---cceEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence 57788999999988866432 2 47788887664221 1111 11458899888766544332 367778
Q ss_pred EccCc--eeeeeeccccccee-EEEEecCCCEEEEEe---CCCcEEEEeCCCC-ceeeeEecCCccceEEEEeCCCCCCE
Q 047355 87 DYNTM--ASVKEFEAHEDYIR-SLAVHPTFPFVLTAS---DDKLIKLWDWEKN-WECTQTFEGHSHYVMQSAFNPKDLNT 159 (312)
Q Consensus 87 d~~~~--~~~~~~~~h~~~i~-~~~~~~~~~~l~t~s---~d~~v~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~ 159 (312)
++.+. +....++....... ....+.++++++..+ .++.+.+++.... ......+........... +.. ..+
T Consensus 205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~l 282 (686)
T PRK10115 205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQ-HRF 282 (686)
T ss_pred ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCC-CEE
Confidence 88776 33333443222222 333344677654332 3457888884321 111111111111112222 222 222
Q ss_pred EEEEeC---CCeEEEEEcCCCcceeeeccc-c-cceeEEEEEEcCCceEEEEEeCCCeEEEE--eCCCCeEEEEec-ccc
Q 047355 160 FASASL---DGTIQIWNMDSSAAKFTLDAH-E-KGINCIDYFITSDKVYLITGSDDFTVKVW--DYETKTCVQILE-GHT 231 (312)
Q Consensus 160 ~~s~s~---dg~v~iwd~~~~~~~~~~~~~-~-~~v~~~~~~~~~~~~~l~sg~~dg~i~vw--d~~~~~~~~~~~-~h~ 231 (312)
++.... ...|...++.....-..+..+ . ..+..+.+ . .+.++++...+|.-+++ +..++. ...+. ...
T Consensus 283 y~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~--~-~~~l~~~~~~~g~~~l~~~~~~~~~-~~~l~~~~~ 358 (686)
T PRK10115 283 YLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTL--F-TDWLVVEERQRGLTSLRQINRKTRE-VIGIAFDDP 358 (686)
T ss_pred EEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEE--E-CCEEEEEEEeCCEEEEEEEcCCCCc-eEEecCCCC
Confidence 222221 123434444421111233333 2 24554443 3 34667777777765554 443333 33332 222
Q ss_pred cCeEEEEEe--CCC-cEEEEEeC---CCcEEEEeCCCcc
Q 047355 232 NNVTAVCFH--PEL-RIIITASE---DGTILIWNATTFR 264 (312)
Q Consensus 232 ~~i~~l~~~--~~~-~~l~s~s~---dg~v~iwd~~~~~ 264 (312)
..+..+.++ +++ .++++.++ -+.+..+|..+.+
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 359 AYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred ceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 223333444 333 34544443 3568888877654
No 409
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=93.59 E-value=2.2 Score=38.79 Aligned_cols=153 Identities=10% Similarity=0.068 Sum_probs=84.2
Q ss_pred cccCcEEEEEEcCCCC-eEEEEe--cCCeEEEEeccCCceeeeEEecCCceeEEEEeeC----CcEEEEecCCCeEEEEE
Q 047355 15 QKSDRVKSVDFHPTQP-WVLASL--YSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAR----EHWIVCGSDDKFIRVFD 87 (312)
Q Consensus 15 ~~~~~i~~~~~~~~~~-~l~~~~--~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~g~~dg~i~iwd 87 (312)
+.--+|..++|- ||+ .+++.- .+|.+++= ..+.+..|. .|..+.|.|- ...+++.-....|.+|.
T Consensus 17 qAiHPvhGlaWT-DGkqVvLT~L~l~~gE~kfG---ds~viGqFE----hV~GlsW~P~~~~~~paLLAVQHkkhVtVWq 88 (671)
T PF15390_consen 17 QAIHPVHGLAWT-DGKQVVLTDLQLHNGEPKFG---DSKVIGQFE----HVHGLSWAPPCTADTPALLAVQHKKHVTVWQ 88 (671)
T ss_pred hhhccccceEec-CCCEEEEEeeeeeCCccccC---CccEeeccc----eeeeeeecCcccCCCCceEEEeccceEEEEE
Confidence 334478899996 554 444443 33443332 122333333 4667778763 33566666778999998
Q ss_pred ccC--ceeeeeecccc------cce--eEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCC
Q 047355 88 YNT--MASVKEFEAHE------DYI--RSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDL 157 (312)
Q Consensus 88 ~~~--~~~~~~~~~h~------~~i--~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 157 (312)
+.. .+.-+-+.... -+| ..+.|||....|+.-.....-.++++......++.--...+.|.+..|.+++.
T Consensus 89 L~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~ 168 (671)
T PF15390_consen 89 LCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQ 168 (671)
T ss_pred eccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCC
Confidence 752 11111111111 112 35679999887765554444456666544333333334556788889988554
Q ss_pred CEEEEEeCCCeEEEEEcC
Q 047355 158 NTFASASLDGTIQIWNMD 175 (312)
Q Consensus 158 ~~~~s~s~dg~v~iwd~~ 175 (312)
.++++.+..=.-++||-.
T Consensus 169 RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 169 RLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred EEEEEeCCeEEEEEecCc
Confidence 444444444456788854
No 410
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=93.58 E-value=0.41 Score=27.03 Aligned_cols=31 Identities=23% Similarity=0.367 Sum_probs=25.5
Q ss_pred cCeEEEEEeCCCc---EEEEEeCCCcEEEEeCCC
Q 047355 232 NNVTAVCFHPELR---IIITASEDGTILIWNATT 262 (312)
Q Consensus 232 ~~i~~l~~~~~~~---~l~s~s~dg~v~iwd~~~ 262 (312)
+.|+++.|+|... +|+-.-.-+.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 3689999998554 777777789999999984
No 411
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=93.48 E-value=3.3 Score=33.21 Aligned_cols=57 Identities=12% Similarity=0.106 Sum_probs=44.9
Q ss_pred EEEEeCCCcEEEEEeCCCcEEEEeCCCcceeeecccCccceEEEEEe-cCCCeEEEEe
Q 047355 236 AVCFHPELRIIITASEDGTILIWNATTFRLQNTLSSGLERVWSIGYK-KGSNQVAFGC 292 (312)
Q Consensus 236 ~l~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~ 292 (312)
.++...+|.+.++.=..++|.-.|..+++.+.++.-...++.+++|. |+...|.+.+
T Consensus 216 Gm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~d~~yvT~ 273 (310)
T KOG4499|consen 216 GMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKNLDILYVTT 273 (310)
T ss_pred cceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCCCccEEEEEe
Confidence 44556678877777778899999999999999999888999999996 4455555443
No 412
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=93.12 E-value=0.073 Score=50.11 Aligned_cols=172 Identities=13% Similarity=0.126 Sum_probs=90.2
Q ss_pred ecCCceeEEEEee-CCcEEEEecCCCeEEEEEccC--ceeeeee-----cccccceeEEEE---ecCCCEEEEEeCCCcE
Q 047355 57 VTDSPVRTAKFVA-REHWIVCGSDDKFIRVFDYNT--MASVKEF-----EAHEDYIRSLAV---HPTFPFVLTASDDKLI 125 (312)
Q Consensus 57 ~~~~~v~~~~~~~-~~~~l~~g~~dg~i~iwd~~~--~~~~~~~-----~~h~~~i~~~~~---~~~~~~l~t~s~d~~v 125 (312)
+..+.+..+.|.. +...+. -.-|.+.+|+++- ++....+ .....++.-+.| -+...++..+-.++.+
T Consensus 130 gf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i 207 (1283)
T KOG1916|consen 130 GFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEI 207 (1283)
T ss_pred cCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCce
Confidence 3445555556543 111121 2337788998753 2222222 122223333333 3455678888889999
Q ss_pred EEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeCCCeEEEEEcCCCcceeeecccccceeEEEEEEcCCceEEE
Q 047355 126 KLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLI 205 (312)
Q Consensus 126 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 205 (312)
++..+++... ..+.+|...+..++|...+...+.. .++||..++
T Consensus 208 ~lL~~~ra~~--~l~rsHs~~~~d~a~~~~g~~~l~~----------------------------------lSpDGtv~a 251 (1283)
T KOG1916|consen 208 RLLNINRALR--SLFRSHSQRVTDMAFFAEGVLKLAS----------------------------------LSPDGTVFA 251 (1283)
T ss_pred eEeeechHHH--HHHHhcCCCcccHHHHhhchhhhee----------------------------------eCCCCcEEE
Confidence 9887765422 3456677777766665433222222 356666666
Q ss_pred EEeCCCeEEEEeCC-----CCeEEEEeccccc-CeEEEEEeCCC---------cEEEEEeC-CCcEEEEeCCCccee
Q 047355 206 TGSDDFTVKVWDYE-----TKTCVQILEGHTN-NVTAVCFHPEL---------RIIITASE-DGTILIWNATTFRLQ 266 (312)
Q Consensus 206 sg~~dg~i~vwd~~-----~~~~~~~~~~h~~-~i~~l~~~~~~---------~~l~s~s~-dg~v~iwd~~~~~~~ 266 (312)
.++.||.+++|.+. ...|++..+.|.+ +-.|.-++.+. .+++++++ .+.+++|....++..
T Consensus 252 ~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 252 WAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred EeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 66677766666542 2234445555552 22222233221 13444444 567999988776653
No 413
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.98 E-value=6.7 Score=36.89 Aligned_cols=178 Identities=12% Similarity=0.174 Sum_probs=86.6
Q ss_pred CeEEEEEccCceeeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceee--eEecCCccceEEEEeCCCCCC
Q 047355 81 KFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECT--QTFEGHSHYVMQSAFNPKDLN 158 (312)
Q Consensus 81 g~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~ 158 (312)
-.|++|++... .+....-...++-.+.|+.+.. |+....+|++.+|++....... ..++.....|....+.. +
T Consensus 64 ~~I~If~~sG~-lL~~~~w~~~~lI~mgWs~~ee-LI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~---~ 138 (829)
T KOG2280|consen 64 PYIRIFNISGQ-LLGRILWKHGELIGMGWSDDEE-LICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFH---N 138 (829)
T ss_pred eeEEEEecccc-chHHHHhcCCCeeeecccCCce-EEEEeccceEEEeecchhhhcccccccccccCceeEEEEec---C
Confidence 45788876543 3333322223788899987765 5567889999999986432221 11222333344444443 2
Q ss_pred EEEEEeCCCeEEEEEcCCCcceeeec---ccccceeEEEEEEcCCceEEEEEe--CCCeEEEEeCCCC-eEEEEeccccc
Q 047355 159 TFASASLDGTIQIWNMDSSAAKFTLD---AHEKGINCIDYFITSDKVYLITGS--DDFTVKVWDYETK-TCVQILEGHTN 232 (312)
Q Consensus 159 ~~~s~s~dg~v~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~l~sg~--~dg~i~vwd~~~~-~~~~~~~~h~~ 232 (312)
-++.-..+|.+.+-+-........+. .....-.|......+....+..+= ..+ ..++..++. .....+....+
T Consensus 139 GVavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~~ 217 (829)
T KOG2280|consen 139 GVAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWPNS 217 (829)
T ss_pred ceEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccCCCCc
Confidence 24555556665554322221122211 111111222221111111111110 000 011111111 11122222235
Q ss_pred CeEEEEEeCCCcEEEEEeCCCcEEEEeCCCcc
Q 047355 233 NVTAVCFHPELRIIITASEDGTILIWNATTFR 264 (312)
Q Consensus 233 ~i~~l~~~~~~~~l~s~s~dg~v~iwd~~~~~ 264 (312)
.+..+..||+.++|+--..+|.|.+-.....+
T Consensus 218 ~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~ 249 (829)
T KOG2280|consen 218 SVVKISVSPNRRFLALYTETGKIWVVSIDLSQ 249 (829)
T ss_pred eEEEEEEcCCcceEEEEecCCcEEEEecchhh
Confidence 67889999999999999999999888765433
No 414
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=92.91 E-value=3.7 Score=36.84 Aligned_cols=143 Identities=10% Similarity=0.151 Sum_probs=81.7
Q ss_pred CCCEEE-EEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCC------CCEEEEEeCCCeEEEEEcCCCcceeeec
Q 047355 112 TFPFVL-TASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKD------LNTFASASLDGTIQIWNMDSSAAKFTLD 184 (312)
Q Consensus 112 ~~~~l~-t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~~~~s~s~dg~v~iwd~~~~~~~~~~~ 184 (312)
+.++|. .|+.-..+.-.|+..+ ..+....-|... -+.|.|.. ...-+.|-.+..|.-.|.+.........
T Consensus 478 dssli~~dg~~~~kLykmDIErG-kvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~ 554 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERG-KVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVV 554 (776)
T ss_pred CcceEEecCCCcccceeeecccc-eeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeee
Confidence 334433 4555556666676654 334444444443 34555532 1223445456666666766433221111
Q ss_pred ccc-----cceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEecccccCeEEEEEeCCCcEEEEEeCCCcEEEEe
Q 047355 185 AHE-----KGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITASEDGTILIWN 259 (312)
Q Consensus 185 ~~~-----~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~s~dg~v~iwd 259 (312)
... ....+. ......++|.|+..|.|++||--....-..+++....|..+..+.+|+++++.+. ..+.+-|
T Consensus 555 esKdY~tKn~Fss~---~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d 630 (776)
T COG5167 555 ESKDYKTKNKFSSG---MTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTD 630 (776)
T ss_pred eehhcccccccccc---ccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEe
Confidence 111 111121 1223568999999999999995433333456777889999999999998877775 3566666
Q ss_pred CC
Q 047355 260 AT 261 (312)
Q Consensus 260 ~~ 261 (312)
++
T Consensus 631 ~~ 632 (776)
T COG5167 631 VP 632 (776)
T ss_pred cc
Confidence 54
No 415
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.79 E-value=5 Score=33.36 Aligned_cols=160 Identities=15% Similarity=0.198 Sum_probs=94.1
Q ss_pred cCCccceEEEEeCCCCCCEEEEEeCCCeEEEEEcCCCcceeeeccc-ccceeEEEEEEcCCceEEEEEeCCCeEEEEeCC
Q 047355 141 EGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAH-EKGINCIDYFITSDKVYLITGSDDFTVKVWDYE 219 (312)
Q Consensus 141 ~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~ 219 (312)
.+-...+..+.|+|....+|++....-. .++=-..++.+.+++-. -.....+.+ ..++.+.++--.++.+.++.+.
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~-iVElt~~GdlirtiPL~g~~DpE~Iey--ig~n~fvi~dER~~~l~~~~vd 158 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAA-IVELTKEGDLIRTIPLTGFSDPETIEY--IGGNQFVIVDERDRALYLFTVD 158 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCce-EEEEecCCceEEEecccccCChhHeEE--ecCCEEEEEehhcceEEEEEEc
Confidence 3444558899999976555555544443 33333344444433211 111223333 2467888888888888888665
Q ss_pred CCeEE-------EEec--cc-ccCeEEEEEeCCCcEEEEEeCCCcEEEEeCCCcc--e-ee---ecccC----ccceEEE
Q 047355 220 TKTCV-------QILE--GH-TNNVTAVCFHPELRIIITASEDGTILIWNATTFR--L-QN---TLSSG----LERVWSI 279 (312)
Q Consensus 220 ~~~~~-------~~~~--~h-~~~i~~l~~~~~~~~l~s~s~dg~v~iwd~~~~~--~-~~---~~~~~----~~~v~~~ 279 (312)
..... ..+. .+ +...-.++|.|..+.|..+=+-.-+.|+.+.... + .+ ..... ...|.++
T Consensus 159 ~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl 238 (316)
T COG3204 159 ADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGL 238 (316)
T ss_pred CCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccc
Confidence 33111 1111 12 4567899999999999998888888888765321 0 00 00011 2357888
Q ss_pred EEecCCCeEEEEecCCeEEEEecc
Q 047355 280 GYKKGSNQVAFGCDNGTLIVKIGN 303 (312)
Q Consensus 280 ~~~~~~~~l~~~~~~g~i~v~~~~ 303 (312)
.|++..+.|.+=|+.....+.+..
T Consensus 239 ~~~~~~~~LLVLS~ESr~l~Evd~ 262 (316)
T COG3204 239 EFNAITNSLLVLSDESRRLLEVDL 262 (316)
T ss_pred eecCCCCcEEEEecCCceEEEEec
Confidence 999877777777777766666654
No 416
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=92.61 E-value=11 Score=36.76 Aligned_cols=271 Identities=10% Similarity=0.025 Sum_probs=135.1
Q ss_pred EcCCCCeEEEEecCCeEEEEecc-CCceeee-----EEecCCce-eEEEEeeCCcEEEEecCCCeEEEEEccCceee---
Q 047355 25 FHPTQPWVLASLYSGTVCIWNYH-SQTTEKS-----VKVTDSPV-RTAKFVAREHWIVCGSDDKFIRVFDYNTMASV--- 94 (312)
Q Consensus 25 ~~~~~~~l~~~~~dg~v~iw~~~-~~~~~~~-----~~~~~~~v-~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~--- 94 (312)
.++++.+.+.+..+|.+...-+. .++.... -...+.++ .++.+. +...++.|+.-|.-.+-.+.+....
T Consensus 265 v~~~~~~yLl~d~~G~Lf~l~l~~~~e~~s~~~lkve~lge~siassi~~L-~ng~lFvGS~~gdSqLi~L~~e~d~gsy 343 (1096)
T KOG1897|consen 265 VDLQGSRYLLGDEDGMLFKLLLSHTGETVSGLDLKVEYLGETSIASSINYL-DNGVLFVGSRFGDSQLIKLNTEPDVGSY 343 (1096)
T ss_pred ccCCccEEEEecCCCcEEEEEeecccccccceEEEEEecCCcchhhhhhcc-cCceEEEeccCCceeeEEccccCCCCch
Confidence 45677788888888887765543 3222221 12222233 233333 4567899998776666665543221
Q ss_pred ----eeecccccceeEEEEecC----CCEEEEEe---CCCcEEEEeCCCCc--eeeeEecCCccceEEEE--eCCCCCCE
Q 047355 95 ----KEFEAHEDYIRSLAVHPT----FPFVLTAS---DDKLIKLWDWEKNW--ECTQTFEGHSHYVMQSA--FNPKDLNT 159 (312)
Q Consensus 95 ----~~~~~h~~~i~~~~~~~~----~~~l~t~s---~d~~v~iwd~~~~~--~~~~~~~~~~~~v~~~~--~~~~~~~~ 159 (312)
..+. .-+||.++.+-.. +..++|++ .||++|+..-.-+- .....+.| -..++.+. +++.-.++
T Consensus 344 ~~ilet~~-NLgPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d~y 421 (1096)
T KOG1897|consen 344 VVILETFV-NLGPIVDMCVVDLDRQGQGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYDNY 421 (1096)
T ss_pred hhhhhhcc-cccceeeEEEEeccccCCceEEEEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccCCcE
Confidence 2221 2357888776432 23455553 58999998532111 11122333 23344444 55544456
Q ss_pred EEEEeCCCeEEEEEcCCCcceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEecccccCeEEEEE
Q 047355 160 FASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCF 239 (312)
Q Consensus 160 ~~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~i~~l~~ 239 (312)
++.+..+.+ ++..+...-......+-......+... .-.+..++-.. ...|++++-. .....+.. .+.++....
T Consensus 422 lvlsf~~eT-rvl~i~~e~ee~~~~gf~~~~~Tif~S-~i~g~~lvQvT-s~~iRl~ss~--~~~~~W~~-p~~~ti~~~ 495 (1096)
T KOG1897|consen 422 LVLSFISET-RVLNISEEVEETEDPGFSTDEQTIFCS-TINGNQLVQVT-SNSIRLVSSA--GLRSEWRP-PGKITIGVV 495 (1096)
T ss_pred EEEEeccce-EEEEEccceEEeccccccccCceEEEE-ccCCceEEEEe-cccEEEEcch--hhhhcccC-CCceEEEEE
Confidence 666655554 444554321110011111111111111 11122222222 2346666643 22333332 233444444
Q ss_pred eCCCcEEEEEeCCCcEEEEeCCCcceee-ecccCccceEEEEEecCC---C---eEEEEecCCeEEEEeccC
Q 047355 240 HPELRIIITASEDGTILIWNATTFRLQN-TLSSGLERVWSIGYKKGS---N---QVAFGCDNGTLIVKIGNS 304 (312)
Q Consensus 240 ~~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~---~---~l~~~~~~g~i~v~~~~~ 304 (312)
+.+...++.++.++.+...++....+.. .-..-...|.|+.++|-| + +++.|.++..+++-.-.+
T Consensus 496 ~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~p 567 (1096)
T KOG1897|consen 496 SANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLP 567 (1096)
T ss_pred eecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECC
Confidence 5555677888877888777776544211 111223568999999752 3 788999988877654443
No 417
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=92.35 E-value=0.83 Score=25.80 Aligned_cols=32 Identities=16% Similarity=0.158 Sum_probs=26.1
Q ss_pred cceeEEEEecCCC---EEEEEeCCCcEEEEeCCCC
Q 047355 102 DYIRSLAVHPTFP---FVLTASDDKLIKLWDWEKN 133 (312)
Q Consensus 102 ~~i~~~~~~~~~~---~l~t~s~d~~v~iwd~~~~ 133 (312)
+.|.++.|+|... +|+.+-.-+.|.++|+++.
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 3688999997554 7888888899999998854
No 418
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=91.84 E-value=6.3 Score=32.40 Aligned_cols=184 Identities=11% Similarity=0.038 Sum_probs=99.7
Q ss_pred cceeEEEEecCCCEEEEEeCCC--cEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeCCCeEEEEEcCCCcc
Q 047355 102 DYIRSLAVHPTFPFVLTASDDK--LIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAA 179 (312)
Q Consensus 102 ~~i~~~~~~~~~~~l~t~s~d~--~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~ 179 (312)
.....+.+.+++.++-+.+.-| .++.+|+.+........-...-+--.+... +..+..-.=.++...+||..+.+.
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~ 122 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKK 122 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEE
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceE
Confidence 3456678867777777777766 688888876533222111111121222222 223334444678889999988777
Q ss_pred eeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEeccc-----ccCeEEEEEeCCCcEEEEEeCCCc
Q 047355 180 KFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGH-----TNNVTAVCFHPELRIIITASEDGT 254 (312)
Q Consensus 180 ~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h-----~~~i~~l~~~~~~~~l~s~s~dg~ 254 (312)
+.++.-...+ .-++ .++..|+....+..|.++|.++.+....+.-. -..++-+.|- +|...|=.=....
T Consensus 123 ~~~~~y~~EG-WGLt----~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~ 196 (264)
T PF05096_consen 123 IGTFPYPGEG-WGLT----SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDR 196 (264)
T ss_dssp EEEEE-SSS---EEE----ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSE
T ss_pred EEEEecCCcc-eEEE----cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCe
Confidence 6665433221 2222 34555666666778999998877666554322 1245666665 4554444444456
Q ss_pred EEEEeCCCcceeeecc---------------cCccceEEEEEecCCCeEEEEec
Q 047355 255 ILIWNATTFRLQNTLS---------------SGLERVWSIGYKKGSNQVAFGCD 293 (312)
Q Consensus 255 v~iwd~~~~~~~~~~~---------------~~~~~v~~~~~~~~~~~l~~~~~ 293 (312)
|...|..++++...+. ........+||.|..+.|...+.
T Consensus 197 I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 197 IVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp EEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred EEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 6677777776543221 11345899999988777665543
No 419
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.63 E-value=6.8 Score=39.24 Aligned_cols=34 Identities=15% Similarity=0.291 Sum_probs=30.7
Q ss_pred ccccCeEEEEEeCCCcEEEEEeCCCcEEEEeCCC
Q 047355 229 GHTNNVTAVCFHPELRIIITASEDGTILIWNATT 262 (312)
Q Consensus 229 ~h~~~i~~l~~~~~~~~l~s~s~dg~v~iwd~~~ 262 (312)
.+.++|..++.......+.+=++.|+|++||+..
T Consensus 240 ~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 240 SSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred CCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 5677999999999889999999999999999865
No 420
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=91.62 E-value=6.7 Score=32.25 Aligned_cols=146 Identities=16% Similarity=0.141 Sum_probs=77.4
Q ss_pred ceEEEEeCCCCCCEEEEEeCCC--eEEEEEcCCCcceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEe-CCCCe
Q 047355 146 YVMQSAFNPKDLNTFASASLDG--TIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWD-YETKT 222 (312)
Q Consensus 146 ~v~~~~~~~~~~~~~~s~s~dg--~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd-~~~~~ 222 (312)
.+.+.+.++.+....+....++ .++++....... ..+.+. .+....| ++++...+....+...+++. ..++.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~-~~~~g~--~l~~PS~--d~~g~~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVR-PVLTGG--SLTRPSW--DPDGWVWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcce-eeccCC--ccccccc--cCCCCEEEEEcCCCceEEEEecCCCc
Confidence 4556677775433333332233 444444332211 111222 3333333 45565555555566666663 23332
Q ss_pred --EEEEecc-cccCeEEEEEeCCCcEEEEEe---CCCcEEEEeCC---Cc---c---eeeecccCccceEEEEEecCCCe
Q 047355 223 --CVQILEG-HTNNVTAVCFHPELRIIITAS---EDGTILIWNAT---TF---R---LQNTLSSGLERVWSIGYKKGSNQ 287 (312)
Q Consensus 223 --~~~~~~~-h~~~i~~l~~~~~~~~l~s~s---~dg~v~iwd~~---~~---~---~~~~~~~~~~~v~~~~~~~~~~~ 287 (312)
....-.. -.+.|++++++|||..+|... .++.|.+=-+. .+ . ...........+..++|.+++.+
T Consensus 100 ~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L 179 (253)
T PF10647_consen 100 GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTL 179 (253)
T ss_pred ceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEE
Confidence 2211111 112899999999999887666 34666666432 22 1 11122233567899999999999
Q ss_pred EEEEecCCe
Q 047355 288 VAFGCDNGT 296 (312)
Q Consensus 288 l~~~~~~g~ 296 (312)
++.+...+.
T Consensus 180 ~V~~~~~~~ 188 (253)
T PF10647_consen 180 VVLGRSAGG 188 (253)
T ss_pred EEEeCCCCC
Confidence 888777654
No 421
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.59 E-value=7.3 Score=34.53 Aligned_cols=95 Identities=12% Similarity=0.179 Sum_probs=57.3
Q ss_pred ccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCce---eeeEecCCccceEEEEeCCCCCCEEEEEeCCCeEEEEEcC
Q 047355 99 AHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWE---CTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMD 175 (312)
Q Consensus 99 ~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~ 175 (312)
...++|.++.|+++.+.++.--.+++|.+++...... ..++.......+....|... .-++-.+..| +-+|...
T Consensus 64 ~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s--~e~A~i~~~G-~e~y~v~ 140 (657)
T KOG2377|consen 64 DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS--TEIAFITDQG-IEFYQVL 140 (657)
T ss_pred cCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC--eeEEEEecCC-eEEEEEc
Confidence 3456899999999999999999999999998743321 11222333344666666643 3444444444 5666654
Q ss_pred CCc-ceeeecccccceeEEEEE
Q 047355 176 SSA-AKFTLDAHEKGINCIDYF 196 (312)
Q Consensus 176 ~~~-~~~~~~~~~~~v~~~~~~ 196 (312)
..+ .....+.|...|+...|.
T Consensus 141 pekrslRlVks~~~nvnWy~yc 162 (657)
T KOG2377|consen 141 PEKRSLRLVKSHNLNVNWYMYC 162 (657)
T ss_pred hhhhhhhhhhhcccCccEEEEc
Confidence 432 223344555566655543
No 422
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=91.54 E-value=4.1 Score=29.60 Aligned_cols=114 Identities=11% Similarity=0.106 Sum_probs=59.9
Q ss_pred EEEEeeCCcEEEEecCCCeEEEEEccCceeee-------eecccccceeEEEEec-----CCCEEEEEeCCCcEEEEeCC
Q 047355 64 TAKFVAREHWIVCGSDDKFIRVFDYNTMASVK-------EFEAHEDYIRSLAVHP-----TFPFVLTASDDKLIKLWDWE 131 (312)
Q Consensus 64 ~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~-------~~~~h~~~i~~~~~~~-----~~~~l~t~s~d~~v~iwd~~ 131 (312)
..+|......|++++.-|.|.+++........ .+-.-...|++++..+ ....|+.|+ ..++..||+.
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~ 81 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVE 81 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcc
Confidence 34555555678888888999999865432111 1223345688876554 234566665 4679999987
Q ss_pred CCceeeeE-ecCCccceEEEEeCCCCCCEEEEEeCCCeEEEEEcCCCcc
Q 047355 132 KNWECTQT-FEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAA 179 (312)
Q Consensus 132 ~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~ 179 (312)
.+.....+ +...-+.+.--.+......+++. +.+..|+-||....+.
T Consensus 82 ~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~iv-GGncsi~Gfd~~G~e~ 129 (136)
T PF14781_consen 82 NNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIV-GGNCSIQGFDYEGNEI 129 (136)
T ss_pred cCchhhhhhCccceeEEEEEecCCCCCcEEEE-CceEEEEEeCCCCcEE
Confidence 66433221 11111122212222222234443 3456666666654443
No 423
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=91.38 E-value=9.7 Score=33.66 Aligned_cols=147 Identities=8% Similarity=-0.009 Sum_probs=75.6
Q ss_pred cEEEEEEcCCCCeEEEEecCCeEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEecCCCeEEEEEccCce-----e
Q 047355 19 RVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMA-----S 93 (312)
Q Consensus 19 ~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~-----~ 93 (312)
....+...+++.+++.+......+-||-....-...-......+..+.+.+++..++++ .+|.+ ++..+.+. .
T Consensus 240 sf~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l-~~S~d~G~~~~~~~ 317 (398)
T PLN00033 240 TFSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGL-YVSKGTGLTEEDFD 317 (398)
T ss_pred ceeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceE-EEecCCCCcccccc
Confidence 35566777888777766554434445432111011122234457788888888877665 55654 33333332 1
Q ss_pred eeeeccc--ccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEe---cCCccceEEEEeCCCCCCEEEEEeCCCe
Q 047355 94 VKEFEAH--EDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTF---EGHSHYVMQSAFNPKDLNTFASASLDGT 168 (312)
Q Consensus 94 ~~~~~~h--~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~s~s~dg~ 168 (312)
..+.... ...+.++.+.+++..+++ +..|.+....-. . +.-... ..-......+.|.+. +.....+.+|.
T Consensus 318 f~~~~~~~~~~~l~~v~~~~d~~~~a~-G~~G~v~~s~D~-G-~tW~~~~~~~~~~~~ly~v~f~~~--~~g~~~G~~G~ 392 (398)
T PLN00033 318 FEEADIKSRGFGILDVGYRSKKEAWAA-GGSGILLRSTDG-G-KSWKRDKGADNIAANLYSVKFFDD--KKGFVLGNDGV 392 (398)
T ss_pred eeecccCCCCcceEEEEEcCCCcEEEE-ECCCcEEEeCCC-C-cceeEccccCCCCcceeEEEEcCC--CceEEEeCCcE
Confidence 2222211 234888988887776554 456766654321 1 111111 112234556776543 34445556777
Q ss_pred EEEE
Q 047355 169 IQIW 172 (312)
Q Consensus 169 v~iw 172 (312)
|.-|
T Consensus 393 il~~ 396 (398)
T PLN00033 393 LLRY 396 (398)
T ss_pred EEEe
Confidence 6544
No 424
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=90.95 E-value=2.8 Score=33.63 Aligned_cols=64 Identities=9% Similarity=0.096 Sum_probs=46.8
Q ss_pred EeeCCcEEEEecCCCeEEEEEccCceeeee-------ec-------ccccceeEEEEecCCCEEEEEeCCCcEEEEeCC
Q 047355 67 FVAREHWIVCGSDDKFIRVFDYNTMASVKE-------FE-------AHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWE 131 (312)
Q Consensus 67 ~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~-------~~-------~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~ 131 (312)
+..+++++++-+.+|.+++||+.+.+.... +. .....|..+.++.+|.-+++-+ +|....|+..
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence 556788999999999999999988764322 11 3456788888888777666655 4677888743
No 425
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=90.90 E-value=2.5 Score=33.92 Aligned_cols=62 Identities=19% Similarity=0.312 Sum_probs=46.6
Q ss_pred CCceEEEEEeCCCeEEEEeCCCCeEEEE-------ec-------ccccCeEEEEEeCCCcEEEEEeCCCcEEEEeCC
Q 047355 199 SDKVYLITGSDDFTVKVWDYETKTCVQI-------LE-------GHTNNVTAVCFHPELRIIITASEDGTILIWNAT 261 (312)
Q Consensus 199 ~~~~~l~sg~~dg~i~vwd~~~~~~~~~-------~~-------~h~~~i~~l~~~~~~~~l~s~s~dg~v~iwd~~ 261 (312)
.++.++++-+.+|.+++||+.+++.+.. +. .....|..+.++.+|.-+++-+ +|..+.|+..
T Consensus 20 ~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 20 CNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred eCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence 4577899999999999999998775432 22 2446789999998887666655 5788999753
No 426
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=90.89 E-value=3.5 Score=36.46 Aligned_cols=47 Identities=11% Similarity=0.015 Sum_probs=37.0
Q ss_pred hhhhcccCcEEEEEEcCCCCeEEEEecCCeEEEEeccCCceeeeEEe
Q 047355 11 KEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKV 57 (312)
Q Consensus 11 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~ 57 (312)
..+.+....+.+++.+|++++.++...-|.|.++|+.....++.+++
T Consensus 301 ~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKG 347 (415)
T PF14655_consen 301 FGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKG 347 (415)
T ss_pred EeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhcc
Confidence 34555666899999999998888877779999999988766655544
No 427
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.75 E-value=11 Score=33.37 Aligned_cols=142 Identities=11% Similarity=0.097 Sum_probs=83.7
Q ss_pred EEEEEEcCCCCeEEEEecCCeEEEEeccC--CceeeeEE-ecCCceeEEEEeeCCcEEEEecCCCeEEEEEccCcee---
Q 047355 20 VKSVDFHPTQPWVLASLYSGTVCIWNYHS--QTTEKSVK-VTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMAS--- 93 (312)
Q Consensus 20 i~~~~~~~~~~~l~~~~~dg~v~iw~~~~--~~~~~~~~-~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~--- 93 (312)
-+.+-|+..++.|++.... .+.=|-... ....-++. ...++|.++.|++|.+.|+.--.+.+|.+++....+.
T Consensus 25 sngvFfDDaNkqlfavrSg-gatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~ 103 (657)
T KOG2377|consen 25 SNGVFFDDANKQLFAVRSG-GATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLE 103 (657)
T ss_pred ccceeeccCcceEEEEecC-CeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhH
Confidence 3556666666666654443 334443321 22222332 3457999999999999999999999999998743322
Q ss_pred -eeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEe
Q 047355 94 -VKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASAS 164 (312)
Q Consensus 94 -~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s 164 (312)
.++.+..+..|....|..+ .-++..++. .+.+|.........+..+.|...|.-..|.+...-.+++.+
T Consensus 104 ~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~-G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~ 173 (657)
T KOG2377|consen 104 YTQECKTKNANILGFCWTSS-TEIAFITDQ-GIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTT 173 (657)
T ss_pred HHHHhccCcceeEEEEEecC-eeEEEEecC-CeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeecc
Confidence 2223344556888899866 445555543 36677654443444445556666666667664433333333
No 428
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=90.48 E-value=12 Score=33.22 Aligned_cols=266 Identities=15% Similarity=0.178 Sum_probs=129.7
Q ss_pred CCeEEEEecCCeEEEEeccCCcee----eeEEecCCceeEEE---EeeC-CcEEEEecCCCeEEEEEccCc---------
Q 047355 29 QPWVLASLYSGTVCIWNYHSQTTE----KSVKVTDSPVRTAK---FVAR-EHWIVCGSDDKFIRVFDYNTM--------- 91 (312)
Q Consensus 29 ~~~l~~~~~dg~v~iw~~~~~~~~----~~~~~~~~~v~~~~---~~~~-~~~l~~g~~dg~i~iwd~~~~--------- 91 (312)
...+++|+..|.++|++....... ..-.....||..+. |.+. +...++.-.-..+.+|.+...
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~~ 116 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGNQ 116 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCcE
Confidence 468999999999999997543211 11112334665554 3232 333444456678888876321
Q ss_pred eeeeeecccc--cceeEEEEecC-----CCEEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEe
Q 047355 92 ASVKEFEAHE--DYIRSLAVHPT-----FPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASAS 164 (312)
Q Consensus 92 ~~~~~~~~h~--~~i~~~~~~~~-----~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s 164 (312)
..++....|. .....+++-|- ..+++.-+.||.+.+|+-+.- ....+....-..--+.|.+. .+.|++++
T Consensus 117 ~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~--~f~~~lp~~llPgPl~Y~~~-tDsfvt~s 193 (418)
T PF14727_consen 117 YQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESF--AFSRFLPDFLLPGPLCYCPR-TDSFVTAS 193 (418)
T ss_pred EEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcE--EEEEEcCCCCCCcCeEEeec-CCEEEEec
Confidence 1222222332 12233444332 257888999999999985432 11222111111122445553 46788888
Q ss_pred CCCeEEEEEcCCCcce-----------------------eeecccccceeEEEEEEc--CCceEEEEEeCCCeEEEEeCC
Q 047355 165 LDGTIQIWNMDSSAAK-----------------------FTLDAHEKGINCIDYFIT--SDKVYLITGSDDFTVKVWDYE 219 (312)
Q Consensus 165 ~dg~v~iwd~~~~~~~-----------------------~~~~~~~~~v~~~~~~~~--~~~~~l~sg~~dg~i~vwd~~ 219 (312)
.+..+.-|........ .++..- ..+..+..... .....++-| ..++.+.+.
T Consensus 194 ss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlG-E~~l~i~v~~~~~~~~~IvvLg--er~Lf~l~~- 269 (418)
T PF14727_consen 194 SSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLG-EQALDIQVVRFSSSESDIVVLG--ERSLFCLKD- 269 (418)
T ss_pred CceeEEEecHHHhhhccccccccccccccccccccccceeEEECC-ceeEEEEEEEcCCCCceEEEEe--cceEEEEcC-
Confidence 8888888875321000 001000 11111211111 112223332 345555554
Q ss_pred CCeEEEE--ecccccCe--EEEEE--eCCC-cEEEEEeCCCcEEEEeCCCcceeeecccCccce-EEEE-EecCCCeEEE
Q 047355 220 TKTCVQI--LEGHTNNV--TAVCF--HPEL-RIIITASEDGTILIWNATTFRLQNTLSSGLERV-WSIG-YKKGSNQVAF 290 (312)
Q Consensus 220 ~~~~~~~--~~~h~~~i--~~l~~--~~~~-~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v-~~~~-~~~~~~~l~~ 290 (312)
+|..... +....... ..+.+ .|+. ..++.++.++.+.||.-. +++....-...+| ..++ |..-...|++
T Consensus 270 ~G~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~--~L~WsA~l~~~PVal~v~~~~~~~G~IV~ 347 (418)
T PF14727_consen 270 NGSLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDT--TLVWSAQLPHVPVALSVANFNGLKGLIVS 347 (418)
T ss_pred CCeEEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCC--eEEEecCCCCCCEEEEecccCCCCceEEE
Confidence 3433322 22211111 11111 1221 258899999999999744 3333322222222 1222 3334567788
Q ss_pred EecCCeEEEEecc
Q 047355 291 GCDNGTLIVKIGN 303 (312)
Q Consensus 291 ~~~~g~i~v~~~~ 303 (312)
-+++|++.+--..
T Consensus 348 Ls~~G~L~v~YLG 360 (418)
T PF14727_consen 348 LSDEGQLSVSYLG 360 (418)
T ss_pred EcCCCcEEEEEeC
Confidence 8889998876544
No 429
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=90.46 E-value=4.2 Score=36.29 Aligned_cols=31 Identities=26% Similarity=0.623 Sum_probs=25.4
Q ss_pred cCeEEEEEeCCCcEEEEEeCCCcEEEEeCCC
Q 047355 232 NNVTAVCFHPELRIIITASEDGTILIWNATT 262 (312)
Q Consensus 232 ~~i~~l~~~~~~~~l~s~s~dg~v~iwd~~~ 262 (312)
..|.+++..+..+.+++-+.+|.|++|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 3499999999889999999999999999964
No 430
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=90.42 E-value=5.3 Score=29.01 Aligned_cols=107 Identities=14% Similarity=0.275 Sum_probs=64.7
Q ss_pred EEEEcCCCCeEEEEecCCeEEEEeccCCc--------eeeeEEecCCceeEEE---Eee--CCcEEEEecCCCeEEEEEc
Q 047355 22 SVDFHPTQPWVLASLYSGTVCIWNYHSQT--------TEKSVKVTDSPVRTAK---FVA--REHWIVCGSDDKFIRVFDY 88 (312)
Q Consensus 22 ~~~~~~~~~~l~~~~~dg~v~iw~~~~~~--------~~~~~~~~~~~v~~~~---~~~--~~~~l~~g~~dg~i~iwd~ 88 (312)
.-.|+...+.|++++..|+|.|++.+... .++.+... ..|++++ +.+ +.+.|+.|+. ..+..||+
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin-~~italaaG~l~~~~~~D~LliGt~-t~llaYDV 80 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNIN-QEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDV 80 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECC-CceEEEEEEecCCCCCcCEEEEecc-ceEEEEEc
Confidence 34677788899999999999999976442 22333322 3444543 322 3456777766 47899999
Q ss_pred cCceeeeeecccccceeEEEEec----CCCEEEEEeCCCcEEEEeCCC
Q 047355 89 NTMASVKEFEAHEDYIRSLAVHP----TFPFVLTASDDKLIKLWDWEK 132 (312)
Q Consensus 89 ~~~~~~~~~~~h~~~i~~~~~~~----~~~~l~t~s~d~~v~iwd~~~ 132 (312)
+...-+ -++.-.+.|+++.+-. ..++++.| .+..|.-||...
T Consensus 81 ~~N~d~-Fyke~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G 126 (136)
T PF14781_consen 81 ENNSDL-FYKEVPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEG 126 (136)
T ss_pred ccCchh-hhhhCccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCC
Confidence 876433 2233346688877642 22344444 456666666543
No 431
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=90.16 E-value=10 Score=31.85 Aligned_cols=221 Identities=12% Similarity=0.127 Sum_probs=116.6
Q ss_pred cEEEEEEcCCCCeEEEEecCCeEEEEeccC------C-ceeeeEEe-----cCCceeEEEEeeCC------------cEE
Q 047355 19 RVKSVDFHPTQPWVLASLYSGTVCIWNYHS------Q-TTEKSVKV-----TDSPVRTAKFVARE------------HWI 74 (312)
Q Consensus 19 ~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~------~-~~~~~~~~-----~~~~v~~~~~~~~~------------~~l 74 (312)
.-+.|+|+|.+.+-++....+...+||... . .....+.. .....+.+.|+... ..+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 558899999998888888889999999861 1 11111111 11234555665322 235
Q ss_pred EEecCCCeEEEEEccCce-----eeeeecc-cccce-eEEEEe--cCCCEEEEE-eCCCcEEEEeCCCCcee-eeEec--
Q 047355 75 VCGSDDKFIRVFDYNTMA-----SVKEFEA-HEDYI-RSLAVH--PTFPFVLTA-SDDKLIKLWDWEKNWEC-TQTFE-- 141 (312)
Q Consensus 75 ~~g~~dg~i~iwd~~~~~-----~~~~~~~-h~~~i-~~~~~~--~~~~~l~t~-s~d~~v~iwd~~~~~~~-~~~~~-- 141 (312)
+.+++||+|.-|...-.. ....+.. ....| +.+++. ..+.+|..+ -..++|.+||-.-.... ...+.
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP 183 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDP 183 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCC
Confidence 778899999999842111 1112211 12333 234443 334555544 35789999984321100 00111
Q ss_pred --------------CCccceEEEEeCCCCCCEEEEEeCCCeEEEEEcCCCcceeeec--ccccceeEEEEEE----cCCc
Q 047355 142 --------------GHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLD--AHEKGINCIDYFI----TSDK 201 (312)
Q Consensus 142 --------------~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~--~~~~~v~~~~~~~----~~~~ 201 (312)
+..-+|....-.+.. ..=+.+..-|.|-+||+... .++.+. +.-....-+...+ ...+
T Consensus 184 ~iPagyAPFnIqnig~~lyVtYA~qd~~~-~d~v~G~G~G~VdvFd~~G~-l~~r~as~g~LNaPWG~a~APa~FG~~sg 261 (336)
T TIGR03118 184 ALPAGYAPFNVQNLGGTLYVTYAQQDADR-NDEVAGAGLGYVNVFTLNGQ-LLRRVASSGRLNAPWGLAIAPESFGSLSG 261 (336)
T ss_pred CCCCCCCCcceEEECCeEEEEEEecCCcc-cccccCCCcceEEEEcCCCc-EEEEeccCCcccCCceeeeChhhhCCCCC
Confidence 011122222222211 22233445578888888643 333331 1112222232211 1235
Q ss_pred eEEEEEeCCCeEEEEeCCCCeEEEEecccc------cCeEEEEEeC
Q 047355 202 VYLITGSDDFTVKVWDYETKTCVQILEGHT------NNVTAVCFHP 241 (312)
Q Consensus 202 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~------~~i~~l~~~~ 241 (312)
.+|+.=-.||+|..||..+++.+..+.... ..++.|+|-.
T Consensus 262 ~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 262 ALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred CeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 556655579999999998888777665433 3477888854
No 432
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=89.72 E-value=5.8 Score=37.92 Aligned_cols=26 Identities=19% Similarity=0.248 Sum_probs=20.6
Q ss_pred CcEEEEEEcCCCCeEEEEecCCeEEE
Q 047355 18 DRVKSVDFHPTQPWVLASLYSGTVCI 43 (312)
Q Consensus 18 ~~i~~~~~~~~~~~l~~~~~dg~v~i 43 (312)
-.|..|.++|+|..|+..|..|...+
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~ 110 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVL 110 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEE
Confidence 47999999999999998887665443
No 433
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=89.40 E-value=14 Score=32.29 Aligned_cols=62 Identities=10% Similarity=0.252 Sum_probs=41.3
Q ss_pred CeEEEEEeCCCcEEEEEeCC-------------------CcEEEEeCCCcceeeecccCccceEEEEEecCCCeEEEEec
Q 047355 233 NVTAVCFHPELRIIITASED-------------------GTILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGCD 293 (312)
Q Consensus 233 ~i~~l~~~~~~~~l~s~s~d-------------------g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 293 (312)
..+.++|.||+.+.++-+.. |.|.-++..+.+.. .+.......+.++|+++|+.+++-.+
T Consensus 125 ~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e-~~a~G~rnp~Gl~~d~~G~l~~tdn~ 203 (367)
T TIGR02604 125 SLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLR-VVAHGFQNPYGHSVDSWGDVFFCDND 203 (367)
T ss_pred cccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeEE-EEecCcCCCccceECCCCCEEEEccC
Confidence 47789999999877765521 44555565544432 33445666889999999998876544
Q ss_pred CC
Q 047355 294 NG 295 (312)
Q Consensus 294 ~g 295 (312)
++
T Consensus 204 ~~ 205 (367)
T TIGR02604 204 DP 205 (367)
T ss_pred CC
Confidence 33
No 434
>PRK10115 protease 2; Provisional
Probab=89.19 E-value=21 Score=34.17 Aligned_cols=193 Identities=7% Similarity=-0.019 Sum_probs=93.0
Q ss_pred eeEEEEeeCCcEEEEec-----CCCeEEEEEccCceeeeeecccccceeEEEEecCCCEEEEEeCC------CcEEEEeC
Q 047355 62 VRTAKFVAREHWIVCGS-----DDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDD------KLIKLWDW 130 (312)
Q Consensus 62 v~~~~~~~~~~~l~~g~-----~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d------~~v~iwd~ 130 (312)
+....+++++++|+-+. +.-.|++.|+.++..+...-.... ..++|.++++.|+....+ ..|..+++
T Consensus 129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~l 206 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTI 206 (686)
T ss_pred EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEEC
Confidence 55667888998876542 234688888877653222111111 458999988876655432 35666676
Q ss_pred CCCce-eeeEecCCccceEEEEeCCCCCCEEEEEe---CCCeEEEEEcCC--CcceeeecccccceeEEEEEEcCCceEE
Q 047355 131 EKNWE-CTQTFEGHSHYVMQSAFNPKDLNTFASAS---LDGTIQIWNMDS--SAAKFTLDAHEKGINCIDYFITSDKVYL 204 (312)
Q Consensus 131 ~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~s~s---~dg~v~iwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l 204 (312)
.+... ....+........-..+.+.+...++..+ .++.+.+++... .... .+..+...+.. ......+..++
T Consensus 207 gt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~ly~ 284 (686)
T PRK10115 207 GTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPF-VFLPRRKDHEY-SLDHYQHRFYL 284 (686)
T ss_pred CCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCce-EEEECCCCCEE-EEEeCCCEEEE
Confidence 65421 12233322222221223333334333332 235688888532 2221 12222222211 11111233333
Q ss_pred EEEe--CCCeEEEEeCC-CCeEEEEeccc-c-cCeEEEEEeCCCcEEEEEeCCCcEEEEeC
Q 047355 205 ITGS--DDFTVKVWDYE-TKTCVQILEGH-T-NNVTAVCFHPELRIIITASEDGTILIWNA 260 (312)
Q Consensus 205 ~sg~--~dg~i~vwd~~-~~~~~~~~~~h-~-~~i~~l~~~~~~~~l~s~s~dg~v~iwd~ 260 (312)
.+-. ....|...++. .++. ..+..+ . ..|..+.+. ...++++...++.-+++-+
T Consensus 285 ~tn~~~~~~~l~~~~~~~~~~~-~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~ 343 (686)
T PRK10115 285 RSNRHGKNFGLYRTRVRDEQQW-EELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQI 343 (686)
T ss_pred EEcCCCCCceEEEecCCCcccC-eEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEE
Confidence 3322 22334444544 2222 233334 3 368888887 3467777777877555543
No 435
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=89.13 E-value=1.8 Score=23.90 Aligned_cols=40 Identities=15% Similarity=0.260 Sum_probs=25.6
Q ss_pred CCCcEEEE-EeCCCcEEEEeCCCcceeeecccCccceEEEEE
Q 047355 241 PELRIIIT-ASEDGTILIWNATTFRLQNTLSSGLERVWSIGY 281 (312)
Q Consensus 241 ~~~~~l~s-~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~ 281 (312)
|++++|+. .-.++.|.++|..+++...++... ...+.+.|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEe
Confidence 45665554 446789999999888777665542 33344443
No 436
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=89.10 E-value=21 Score=33.97 Aligned_cols=100 Identities=15% Similarity=0.123 Sum_probs=65.0
Q ss_pred CCceEEEEEeCCCeEEEEeCCC-------C-------------eEEEEecccccCeEEEEEe--CCCcEEEEEeCCCcEE
Q 047355 199 SDKVYLITGSDDFTVKVWDYET-------K-------------TCVQILEGHTNNVTAVCFH--PELRIIITASEDGTIL 256 (312)
Q Consensus 199 ~~~~~l~sg~~dg~i~vwd~~~-------~-------------~~~~~~~~h~~~i~~l~~~--~~~~~l~s~s~dg~v~ 256 (312)
.+...|+.+.+||.|.+|.+++ . ++...+. -....++++++ ...++||.++....|.
T Consensus 112 g~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VT 190 (717)
T PF08728_consen 112 GGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVT 190 (717)
T ss_pred CCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEE
Confidence 4567789999999999996521 1 0111222 23468999999 7788899888888888
Q ss_pred EEeCCC--cceee-ecccCccceEEEEEecCC---C---eEEEEecCCeEEE
Q 047355 257 IWNATT--FRLQN-TLSSGLERVWSIGYKKGS---N---QVAFGCDNGTLIV 299 (312)
Q Consensus 257 iwd~~~--~~~~~-~~~~~~~~v~~~~~~~~~---~---~l~~~~~~g~i~v 299 (312)
||-... .+... .-..+...|.+|.|-++. . .+++++=.|.+.+
T Consensus 191 VFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~ 242 (717)
T PF08728_consen 191 VFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWT 242 (717)
T ss_pred EEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEE
Confidence 886543 12111 111245678899996654 2 6667777887553
No 437
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=88.74 E-value=2.1 Score=23.31 Aligned_cols=23 Identities=9% Similarity=0.043 Sum_probs=17.5
Q ss_pred CccceEEEEEecCCCeEEEEecC
Q 047355 272 GLERVWSIGYKKGSNQVAFGCDN 294 (312)
Q Consensus 272 ~~~~v~~~~~~~~~~~l~~~~~~ 294 (312)
....-....|+|||+.|+.++..
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~ 29 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNR 29 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEEC
T ss_pred CCccccCEEEecCCCEEEEEecC
Confidence 34456788999999999988875
No 438
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.56 E-value=13 Score=30.91 Aligned_cols=133 Identities=20% Similarity=0.137 Sum_probs=78.5
Q ss_pred EEEecCCCE-EEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeCCCe-EEEEEcCCCcceeeec
Q 047355 107 LAVHPTFPF-VLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGT-IQIWNMDSSAAKFTLD 184 (312)
Q Consensus 107 ~~~~~~~~~-l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~-v~iwd~~~~~~~~~~~ 184 (312)
....+++++ +++.+.+|.+..--.- --.+| .+.++|.-...++.+-.-|+ ..++|....+...++.
T Consensus 41 af~~~dgs~g~a~~~eaGk~v~~~~l-------paR~H-----gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~ 108 (366)
T COG3490 41 AFDARDGSFGAATLSEAGKIVFATAL-------PARGH-----GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLV 108 (366)
T ss_pred eeeccCCceeEEEEccCCceeeeeec-------ccccC-----CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEe
Confidence 334566665 4566777765432100 01222 24566655555555555554 4678887766655543
Q ss_pred ccccceeEEEEEEcCCceEEEEEeCC-----CeEEEEeCCCC-eEEEEecccccCeEEEEEeCCCcEEEEEeC
Q 047355 185 AHEKGINCIDYFITSDKVYLITGSDD-----FTVKVWDYETK-TCVQILEGHTNNVTAVCFHPELRIIITASE 251 (312)
Q Consensus 185 ~~~~~v~~~~~~~~~~~~~l~sg~~d-----g~i~vwd~~~~-~~~~~~~~h~~~i~~l~~~~~~~~l~s~s~ 251 (312)
..+..-.-=.-++++||.+|..--.| |.|-+||.+.+ +.+..+..|.-.-+.+.+.+||+.++.+..
T Consensus 109 s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanG 181 (366)
T COG3490 109 SQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANG 181 (366)
T ss_pred cccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCC
Confidence 32221111111357888887764333 56889998743 455667788877889999999998877653
No 439
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=88.24 E-value=21 Score=32.89 Aligned_cols=117 Identities=15% Similarity=0.176 Sum_probs=71.0
Q ss_pred hcccCcEEEEEEcCC----CCeEEEEecCCeEEEEeccCC-----ceeeeEE--ecC-Cce--eEEEEeeCCcEEEEecC
Q 047355 14 IQKSDRVKSVDFHPT----QPWVLASLYSGTVCIWNYHSQ-----TTEKSVK--VTD-SPV--RTAKFVAREHWIVCGSD 79 (312)
Q Consensus 14 ~~~~~~i~~~~~~~~----~~~l~~~~~dg~v~iw~~~~~-----~~~~~~~--~~~-~~v--~~~~~~~~~~~l~~g~~ 79 (312)
.+.-..|..++|.|- .+.|++..-...|.+|.+... +...... ..+ -++ ..+.|+|....|+.=..
T Consensus 53 iGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~ 132 (671)
T PF15390_consen 53 IGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTA 132 (671)
T ss_pred eeccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEec
Confidence 344578999999984 468888999999999998522 2221111 111 111 34568888877665444
Q ss_pred CCeEEEEEccCc-eeeeeecccccceeEEEEecCCCEEEEE-eCCCcEEEEeC
Q 047355 80 DKFIRVFDYNTM-ASVKEFEAHEDYIRSLAVHPTFPFVLTA-SDDKLIKLWDW 130 (312)
Q Consensus 80 dg~i~iwd~~~~-~~~~~~~~h~~~i~~~~~~~~~~~l~t~-s~d~~v~iwd~ 130 (312)
...-.++++... ..++.=-...+-|.|.+|.++|+.|+.+ +..=+-.+||-
T Consensus 133 ~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 133 RDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred CceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence 333345555432 2222222345679999999999876543 44446778874
No 440
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=87.97 E-value=9.9 Score=36.05 Aligned_cols=104 Identities=13% Similarity=0.186 Sum_probs=66.6
Q ss_pred CCCEEEEEeCCCeEEEEEcCC-------C-------c------ceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEE
Q 047355 156 DLNTFASASLDGTIQIWNMDS-------S-------A------AKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKV 215 (312)
Q Consensus 156 ~~~~~~s~s~dg~v~iwd~~~-------~-------~------~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~v 215 (312)
+...|+.|..||.|.+|-.+. . . +.+.+. ....+..+++......++||.++....|.|
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTV 191 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTV 191 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEE
Confidence 457899999999999997631 0 0 111111 123445555542356678888888888888
Q ss_pred EeCCC--CeEEE-EecccccCeEEEEEeCCC---c---EEEEEeCCCcEEEEeC
Q 047355 216 WDYET--KTCVQ-ILEGHTNNVTAVCFHPEL---R---IIITASEDGTILIWNA 260 (312)
Q Consensus 216 wd~~~--~~~~~-~~~~h~~~i~~l~~~~~~---~---~l~s~s~dg~v~iwd~ 260 (312)
|-... .+... .-..|...|.+|+|-++. . ++++++-.|.+.+|++
T Consensus 192 Faf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 192 FAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 86532 11111 111256679999997643 2 7888999999999887
No 441
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=87.94 E-value=2.9 Score=38.74 Aligned_cols=36 Identities=22% Similarity=0.293 Sum_probs=27.6
Q ss_pred CeEEEEEeC----CCcEEEEEeCCCcEEEEeCCCcceeee
Q 047355 233 NVTAVCFHP----ELRIIITASEDGTILIWNATTFRLQNT 268 (312)
Q Consensus 233 ~i~~l~~~~----~~~~l~s~s~dg~v~iwd~~~~~~~~~ 268 (312)
...++++++ +..++++-+.|+.+|+||+.+++.+.+
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~ 255 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLAT 255 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEE
T ss_pred ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEE
Confidence 355666666 678999999999999999999888544
No 442
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=87.66 E-value=20 Score=31.90 Aligned_cols=192 Identities=15% Similarity=0.216 Sum_probs=84.0
Q ss_pred CCcEEEEec-CCCeEEEEEccC----ceeeeeecc---cc----cceeEEEEecCCCEEEEE--eCC----CcEEEEeCC
Q 047355 70 REHWIVCGS-DDKFIRVFDYNT----MASVKEFEA---HE----DYIRSLAVHPTFPFVLTA--SDD----KLIKLWDWE 131 (312)
Q Consensus 70 ~~~~l~~g~-~dg~i~iwd~~~----~~~~~~~~~---h~----~~i~~~~~~~~~~~l~t~--s~d----~~v~iwd~~ 131 (312)
+.++|+..+ ..+.|.+.|+.+ .+..+.++. +. ..-..+..-|++.+++++ ..+ |.+.+.|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 345565554 778999999874 234444442 11 112233444778777664 222 345566643
Q ss_pred CCceeeeEecC---CccceEEEEeCCCCCCEEEEEe--------------------CCCeEEEEEcCCCcceeeeccccc
Q 047355 132 KNWECTQTFEG---HSHYVMQSAFNPKDLNTFASAS--------------------LDGTIQIWNMDSSAAKFTLDAHEK 188 (312)
Q Consensus 132 ~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~s~s--------------------~dg~v~iwd~~~~~~~~~~~~~~~ 188 (312)
+ ++.....+. ...+-....|.|. .+.++|.. ...++.+||+.+.+.++++.-...
T Consensus 166 t-f~v~g~We~~~~~~~~gYDfw~qpr-~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~ 243 (461)
T PF05694_consen 166 T-FEVKGRWEKDRGPQPFGYDFWYQPR-HNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEE 243 (461)
T ss_dssp T---EEEE--SB-TT------EEEETT-TTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TT
T ss_pred c-ccccceeccCCCCCCCCCCeEEcCC-CCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCC
Confidence 2 233332222 1223344555553 35555543 345899999999998888765443
Q ss_pred c--eeEEEEEEcCCceEE-EEEeCCCeEEEEeC-CCCe--EEEE--eccc-----------------ccCeEEEEEeCCC
Q 047355 189 G--INCIDYFITSDKVYL-ITGSDDFTVKVWDY-ETKT--CVQI--LEGH-----------------TNNVTAVCFHPEL 243 (312)
Q Consensus 189 ~--v~~~~~~~~~~~~~l-~sg~~dg~i~vwd~-~~~~--~~~~--~~~h-----------------~~~i~~l~~~~~~ 243 (312)
. .-.+.+...|+..+- +.+.-..+|..|-- +.++ ..+. +... ..-|+.|..|.|.
T Consensus 244 g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDD 323 (461)
T PF05694_consen 244 GQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDD 323 (461)
T ss_dssp EEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS
T ss_pred CCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCC
Confidence 3 334555555554433 33334455555532 3332 1111 1110 1337899999998
Q ss_pred cEEEEEe-CCCcEEEEeCCCc
Q 047355 244 RIIITAS-EDGTILIWNATTF 263 (312)
Q Consensus 244 ~~l~s~s-~dg~v~iwd~~~~ 263 (312)
++|.... .+|.||.||++.-
T Consensus 324 rfLYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 324 RFLYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp -EEEEEETTTTEEEEEE-SST
T ss_pred CEEEEEcccCCcEEEEecCCC
Confidence 8877665 4899999999863
No 443
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=87.63 E-value=0.52 Score=44.75 Aligned_cols=110 Identities=12% Similarity=0.196 Sum_probs=66.0
Q ss_pred EEEEEEc---CCCCeEEEEecCCeEEEEeccCCceeeeEEecCCc-----------eeEEEEeeCCcEEEEecCCCeEEE
Q 047355 20 VKSVDFH---PTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSP-----------VRTAKFVAREHWIVCGSDDKFIRV 85 (312)
Q Consensus 20 i~~~~~~---~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~-----------v~~~~~~~~~~~l~~g~~dg~i~i 85 (312)
+.-+.|. +...++..+-.++.|++.++..... ..++.|... +.-...++||..++.++.||.++.
T Consensus 183 ~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f 261 (1283)
T KOG1916|consen 183 PQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGF 261 (1283)
T ss_pred cceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccce
Confidence 3444554 4556677778889999887754321 223333322 222236789999999999999988
Q ss_pred EEcc-----Cceeeeeecccc-cceeEEEEecCC---------CEEEEEeC-CCcEEEEeC
Q 047355 86 FDYN-----TMASVKEFEAHE-DYIRSLAVHPTF---------PFVLTASD-DKLIKLWDW 130 (312)
Q Consensus 86 wd~~-----~~~~~~~~~~h~-~~i~~~~~~~~~---------~~l~t~s~-d~~v~iwd~ 130 (312)
|.+. ...+.+..+.|. .+-.|.-++... .+++++++ +..+++|.-
T Consensus 262 ~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~ 322 (1283)
T KOG1916|consen 262 YQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAE 322 (1283)
T ss_pred eeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeec
Confidence 8753 223556667776 333333344332 24566655 567999973
No 444
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=87.55 E-value=29 Score=33.70 Aligned_cols=197 Identities=13% Similarity=0.128 Sum_probs=106.6
Q ss_pred CcEEEEecCCCeEEEEEccCceeeeeecccccc--------eeEEEEec----------------CCCEEEEEeCCCcEE
Q 047355 71 EHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDY--------IRSLAVHP----------------TFPFVLTASDDKLIK 126 (312)
Q Consensus 71 ~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~--------i~~~~~~~----------------~~~~l~t~s~d~~v~ 126 (312)
+..|+.++.++.|...|..+++.+=++...... .+.+++.. .+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 557788888899999999888765554322110 11233321 234677888899988
Q ss_pred EEeCCCCceeeeEecCCcc------------ceEEEEeCCC-CCCEEEEEeC----------CCeEEEEEcCCCcceeee
Q 047355 127 LWDWEKNWECTQTFEGHSH------------YVMQSAFNPK-DLNTFASASL----------DGTIQIWNMDSSAAKFTL 183 (312)
Q Consensus 127 iwd~~~~~~~~~~~~~~~~------------~v~~~~~~~~-~~~~~~s~s~----------dg~v~iwd~~~~~~~~~~ 183 (312)
-.|..+...+ ..+..... ......-.|. ..+.++.++. +|.|+-+|.++++.+..+
T Consensus 274 ALDA~TGk~~-W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLC-EDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEE-EEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 8887766443 22211000 0000011110 1245666642 688999999998877655
Q ss_pred ccc---------cccee---------EEEEEEcCCce--EEEEE----------------eCCCeEEEEeCCCCeEEEEe
Q 047355 184 DAH---------EKGIN---------CIDYFITSDKV--YLITG----------------SDDFTVKVWDYETKTCVQIL 227 (312)
Q Consensus 184 ~~~---------~~~v~---------~~~~~~~~~~~--~l~sg----------------~~dg~i~vwd~~~~~~~~~~ 227 (312)
..- ..... ...+ +++.. |+-+| -..+.|.-.|.++++..-.+
T Consensus 353 ~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~--D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~ 430 (764)
T TIGR03074 353 DPGNPDPTAPPAPGETYTRNTPNSWSVASY--DEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVF 430 (764)
T ss_pred ecCCCCcccCCCCCCEeccCCCCccCceEE--cCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEe
Confidence 321 00000 0111 11111 11111 11345667788888776555
Q ss_pred cc-cc--------cCeEEEEEeC-CC---cEEEEEeCCCcEEEEeCCCcceeeecc
Q 047355 228 EG-HT--------NNVTAVCFHP-EL---RIIITASEDGTILIWNATTFRLQNTLS 270 (312)
Q Consensus 228 ~~-h~--------~~i~~l~~~~-~~---~~l~s~s~dg~v~iwd~~~~~~~~~~~ 270 (312)
+. |. ....=+.+.. ++ +.++.++++|.+.+.|-.+++++...+
T Consensus 431 Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 431 QTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred cccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence 43 21 1111223332 45 379999999999999999988766543
No 445
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=86.95 E-value=2.3 Score=23.19 Aligned_cols=31 Identities=13% Similarity=0.233 Sum_probs=19.7
Q ss_pred hcccCcEEEEEEcCCCCeEEEE-ecC--CeEEEE
Q 047355 14 IQKSDRVKSVDFHPTQPWVLAS-LYS--GTVCIW 44 (312)
Q Consensus 14 ~~~~~~i~~~~~~~~~~~l~~~-~~d--g~v~iw 44 (312)
......-..-+|+|||++|+-+ ..+ |.-.||
T Consensus 5 t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 5 TNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp S-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred ccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3344567888999999987754 444 555555
No 446
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=86.90 E-value=7.2 Score=36.16 Aligned_cols=71 Identities=13% Similarity=0.151 Sum_probs=43.1
Q ss_pred CCCCeEEEEecCCeEEEEeccC----CceeeeEEe----------------------cCCceeEEEEee----CCcEEEE
Q 047355 27 PTQPWVLASLYSGTVCIWNYHS----QTTEKSVKV----------------------TDSPVRTAKFVA----REHWIVC 76 (312)
Q Consensus 27 ~~~~~l~~~~~dg~v~iw~~~~----~~~~~~~~~----------------------~~~~v~~~~~~~----~~~~l~~ 76 (312)
++...++.+..||.+....... ......... ............ +..++++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 4677888889999988877654 111111000 012233444444 6789999
Q ss_pred ecCCCeEEEEEccCceeeeee
Q 047355 77 GSDDKFIRVFDYNTMASVKEF 97 (312)
Q Consensus 77 g~~dg~i~iwd~~~~~~~~~~ 97 (312)
-+.|+++|+||+.++.++...
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEe
Confidence 999999999999998885543
No 447
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=86.84 E-value=18 Score=30.63 Aligned_cols=234 Identities=13% Similarity=0.103 Sum_probs=107.1
Q ss_pred CCeEEEEecCCeEEEEeccC--CceeeeEEecCCceeEEEEeeCCcEEEE-ecCCCeEEEEEccCcee------------
Q 047355 29 QPWVLASLYSGTVCIWNYHS--QTTEKSVKVTDSPVRTAKFVAREHWIVC-GSDDKFIRVFDYNTMAS------------ 93 (312)
Q Consensus 29 ~~~l~~~~~dg~v~iw~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~-g~~dg~i~iwd~~~~~~------------ 93 (312)
+++|+.|+++|...+. ... .+..+.+ ...+|..+...+..+.|++ ++....++.+++.....
T Consensus 13 ~~~lL~GTe~Gly~~~-~~~~~~~~~kl~--~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~ 89 (302)
T smart00036 13 GKWLLVGTEEGLYVLN-ISDQPGTLEKLI--GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVI 89 (302)
T ss_pred CcEEEEEeCCceEEEE-cccCCCCeEEec--CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCccccc
Confidence 3689999998876555 443 2222222 3446888888877666554 44445699999743321
Q ss_pred ---eeeecccccceeEEEEecC-CCEEEEEeCCCcEEEEeCCCCcee---eeEe---c-CCccceEEEEeCCC-CCCEEE
Q 047355 94 ---VKEFEAHEDYIRSLAVHPT-FPFVLTASDDKLIKLWDWEKNWEC---TQTF---E-GHSHYVMQSAFNPK-DLNTFA 161 (312)
Q Consensus 94 ---~~~~~~h~~~i~~~~~~~~-~~~l~t~s~d~~v~iwd~~~~~~~---~~~~---~-~~~~~v~~~~~~~~-~~~~~~ 161 (312)
....-.|...-....+... ...++.+....+|.++.+...... .+.+ . .....+.....++. ....+.
T Consensus 90 ~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lc 169 (302)
T smart00036 90 RKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGIC 169 (302)
T ss_pred cccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEE
Confidence 0011123322222222221 123344445567777655332111 1110 0 00112222222221 134667
Q ss_pred EEeCCCeEEEEEcCC--Cc-ceeeec--ccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCC-CeEE-EEecccccCe
Q 047355 162 SASLDGTIQIWNMDS--SA-AKFTLD--AHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYET-KTCV-QILEGHTNNV 234 (312)
Q Consensus 162 s~s~dg~v~iwd~~~--~~-~~~~~~--~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~-~~~~-~~~~~h~~~i 234 (312)
.|+..+...++++.. .. ....+. ........+....-+++.++++- |....+-|... .... ..+. -....
T Consensus 170 vG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l~~~e~Llc~--~~~~v~Vn~~G~~~~r~~~l~-w~~~p 246 (302)
T smart00036 170 IGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQVPRDEFLLCY--DEFGVFVNLYGKRRSRNPILH-WEFMP 246 (302)
T ss_pred EEEcCCCCeEEEEeecccccccccccccccccccCceEEEEECCCeEEEEE--CcEEEEEeCCCCccccceEEE-cCCcc
Confidence 776642234444432 10 000000 11100012222223345555443 33444555542 1111 1122 24456
Q ss_pred EEEEEeCCCcEEEEEeCCCcEEEEeCCCcceeeeccc
Q 047355 235 TAVCFHPELRIIITASEDGTILIWNATTFRLQNTLSS 271 (312)
Q Consensus 235 ~~l~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~ 271 (312)
.++++.. ++++.-. +..|.++++.++++.+++..
T Consensus 247 ~~~~~~~--pyll~~~-~~~ievr~l~~~~l~q~i~~ 280 (302)
T smart00036 247 ESFAYHS--PYLLAFH-DNGIEIRSIKTGELLQELAD 280 (302)
T ss_pred cEEEEEC--CEEEEEc-CCcEEEEECCCCceEEEEec
Confidence 6778774 5555555 45599999999888777653
No 448
>PRK13684 Ycf48-like protein; Provisional
Probab=85.63 E-value=22 Score=30.57 Aligned_cols=149 Identities=11% Similarity=0.098 Sum_probs=71.6
Q ss_pred cceEEEEeCCCCCCEEEEEeCCCeEEE-EEcCCCcceeeec-ccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCe
Q 047355 145 HYVMQSAFNPKDLNTFASASLDGTIQI-WNMDSSAAKFTLD-AHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKT 222 (312)
Q Consensus 145 ~~v~~~~~~~~~~~~~~s~s~dg~v~i-wd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~ 222 (312)
..+..+.+.|. . .++..+..|.+.. +|-. .+.-..+. .-...++.+. ..+++..++.| ..|.+.+=....+.
T Consensus 173 g~~~~i~~~~~-g-~~v~~g~~G~i~~s~~~g-g~tW~~~~~~~~~~l~~i~--~~~~g~~~~vg-~~G~~~~~s~d~G~ 246 (334)
T PRK13684 173 GVVRNLRRSPD-G-KYVAVSSRGNFYSTWEPG-QTAWTPHQRNSSRRLQSMG--FQPDGNLWMLA-RGGQIRFNDPDDLE 246 (334)
T ss_pred ceEEEEEECCC-C-eEEEEeCCceEEEEcCCC-CCeEEEeeCCCcccceeee--EcCCCCEEEEe-cCCEEEEccCCCCC
Confidence 35566777764 3 4445555665543 2211 11111111 1123345444 34566655554 55766432233332
Q ss_pred EEEEecc----cccCeEEEEEeCCCcEEEEEeCCCcEEEEeCCCcceeeec---ccCccceEEEEEecCCCeEEEEecCC
Q 047355 223 CVQILEG----HTNNVTAVCFHPELRIIITASEDGTILIWNATTFRLQNTL---SSGLERVWSIGYKKGSNQVAFGCDNG 295 (312)
Q Consensus 223 ~~~~~~~----h~~~i~~l~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~~g 295 (312)
.-..... -...+.++.+.|+++.+++ +.+|.+.. ....++-.... .......+.+.|..+.+.++ .+..|
T Consensus 247 sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~-G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G 323 (334)
T PRK13684 247 SWSKPIIPEITNGYGYLDLAYRTPGEIWAG-GGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRG 323 (334)
T ss_pred ccccccCCccccccceeeEEEcCCCCEEEE-cCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCc
Confidence 1111111 1235788999998775554 45676553 33333332222 12224577788776766655 55666
Q ss_pred eEEEEec
Q 047355 296 TLIVKIG 302 (312)
Q Consensus 296 ~i~v~~~ 302 (312)
.|.-..+
T Consensus 324 ~il~~~~ 330 (334)
T PRK13684 324 VLLRYVG 330 (334)
T ss_pred eEEEecC
Confidence 6654433
No 449
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.45 E-value=11 Score=34.04 Aligned_cols=97 Identities=12% Similarity=0.141 Sum_probs=55.5
Q ss_pred eeEEEEeeCCcEEEEecCCCeEEEEEccCceeeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEec
Q 047355 62 VRTAKFVAREHWIVCGSDDKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFE 141 (312)
Q Consensus 62 v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~ 141 (312)
|..+..++.|..++-++.+|.+..+=.+.......++.....|+|-.+.-+ ..+.+.+.. +
T Consensus 106 V~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~-~~~ftss~~--l---------------- 166 (741)
T KOG4460|consen 106 VYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVA-ERFFTSSTS--L---------------- 166 (741)
T ss_pred EEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeeccc-ceeeccCCc--e----------------
Confidence 445556677888888888887666543333344455544444555544332 223333211 1
Q ss_pred CCccceEEEEeCCCC--CCEEEEEeCCCeEEEEEcCCCccee
Q 047355 142 GHSHYVMQSAFNPKD--LNTFASASLDGTIQIWNMDSSAAKF 181 (312)
Q Consensus 142 ~~~~~v~~~~~~~~~--~~~~~s~s~dg~v~iwd~~~~~~~~ 181 (312)
.+.++.|+|.. ...+..-+.|..+|+||+.......
T Consensus 167 ----tl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~tely 204 (741)
T KOG4460|consen 167 ----TLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTELY 204 (741)
T ss_pred ----eeeeccccCCccCCceEEEEecCcEEEEEecCCcchhh
Confidence 12345677754 4567777788888888887655443
No 450
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=84.95 E-value=6.3 Score=30.22 Aligned_cols=30 Identities=13% Similarity=0.104 Sum_probs=24.2
Q ss_pred cceeEEEEecCC------CEEEEEeCCCcEEEEeCC
Q 047355 102 DYIRSLAVHPTF------PFVLTASDDKLIKLWDWE 131 (312)
Q Consensus 102 ~~i~~~~~~~~~------~~l~t~s~d~~v~iwd~~ 131 (312)
..|..++|+|.| .+|++...++.+.+|.-.
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 368999999965 367888999999999744
No 451
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=84.82 E-value=26 Score=30.61 Aligned_cols=101 Identities=14% Similarity=0.056 Sum_probs=55.0
Q ss_pred CcEEEEEEcCCCCeEEEEe-----------cCC-eEEEEeccC--Cc--eeeeEEecCCceeEEEEeeCCcEEEEecCCC
Q 047355 18 DRVKSVDFHPTQPWVLASL-----------YSG-TVCIWNYHS--QT--TEKSVKVTDSPVRTAKFVAREHWIVCGSDDK 81 (312)
Q Consensus 18 ~~i~~~~~~~~~~~l~~~~-----------~dg-~v~iw~~~~--~~--~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg 81 (312)
.....|+|+++|+..++-. ..+ .|.+++-.. ++ ....+.........+++.+++ |+.+....
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCe
Confidence 4668899999998766542 223 677775321 22 123333223334667788777 55555554
Q ss_pred eEEEEEccCc-----e---eeeeecc----cccceeEEEEecCCCEEEEEe
Q 047355 82 FIRVFDYNTM-----A---SVKEFEA----HEDYIRSLAVHPTFPFVLTAS 120 (312)
Q Consensus 82 ~i~iwd~~~~-----~---~~~~~~~----h~~~i~~~~~~~~~~~l~t~s 120 (312)
..++.+.+.. + ....+.. +......+++.|++.+.++-+
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 3334344321 1 1122222 234477899999988665444
No 452
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=84.82 E-value=0.15 Score=44.78 Aligned_cols=139 Identities=13% Similarity=0.150 Sum_probs=83.6
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeCCCeEEEEEcCCCcceeeecc
Q 047355 106 SLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDA 185 (312)
Q Consensus 106 ~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~ 185 (312)
...|.|.+..++.+..+..+..||-.... .. -...+.....++|+-.....++.+-..+.+.+||+.+....+.-.+
T Consensus 39 ~~~w~~e~~nlavaca~tiv~~YD~agq~--~l-e~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~g 115 (615)
T KOG2247|consen 39 IHRWRPEGHNLAVACANTIVIYYDKAGQV--IL-ELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESG 115 (615)
T ss_pred eeeEecCCCceehhhhhhHHHhhhhhcce--ec-ccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhcc
Confidence 34567777778888888999999844321 11 1112223345566654445566677788999999976533211111
Q ss_pred --cccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEecccccCeEEEEEeCCCcEEEEEeCC
Q 047355 186 --HEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITASED 252 (312)
Q Consensus 186 --~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~s~d 252 (312)
+.... .. .++....++.|...|.+.+++..+....-..-.|...++++++.+.+.. +.++.|
T Consensus 116 g~~s~sl--l~--wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~v-il~dcd 179 (615)
T KOG2247|consen 116 GTSSKSL--LA--WSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYV-ILCDCD 179 (615)
T ss_pred CcchHHH--Hh--hccCCccccccccccceEEEeccchhhhhhhcccccceeEEEeccccee-eecCcH
Confidence 11111 12 2344455667778889999998766554444448888999999987654 344433
No 453
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=84.80 E-value=28 Score=30.99 Aligned_cols=147 Identities=10% Similarity=0.094 Sum_probs=84.8
Q ss_pred CEEEEEeCCCcEEEEeCCCCc-ee--eeEecCCccceEEEEeC---CCCCCEEEEEeCCCeEEEEEcCCCc---------
Q 047355 114 PFVLTASDDKLIKLWDWEKNW-EC--TQTFEGHSHYVMQSAFN---PKDLNTFASASLDGTIQIWNMDSSA--------- 178 (312)
Q Consensus 114 ~~l~t~s~d~~v~iwd~~~~~-~~--~~~~~~~~~~v~~~~~~---~~~~~~~~s~s~dg~v~iwd~~~~~--------- 178 (312)
..|++||..|.++||+..... +. ...-..-..+|..+..- +......++.=.-..+.+|.+....
T Consensus 38 d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~~~ 117 (418)
T PF14727_consen 38 DKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGNQY 117 (418)
T ss_pred cEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCcEE
Confidence 578999999999999975432 11 11111123456655432 2222333333456677888773211
Q ss_pred ceeeecccccceeEEEEEE----cCC-ceEEEEEeCCCeEEEEeCCCCeEEEEecccccCeEEEEEeCCCcEEEEEeCCC
Q 047355 179 AKFTLDAHEKGINCIDYFI----TSD-KVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITASEDG 253 (312)
Q Consensus 179 ~~~~~~~~~~~v~~~~~~~----~~~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~s~dg 253 (312)
....+..|.-.-....+.. ... ..++..-+.||.+.+|+-+.....+.+.. .--...++|.+....+++++.+.
T Consensus 118 ~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~sss~ 196 (418)
T PF14727_consen 118 QLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTASSSW 196 (418)
T ss_pred EEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEecCce
Confidence 1112222322211111111 112 35788889999999999876655555543 22223578888888899999999
Q ss_pred cEEEEeCC
Q 047355 254 TILIWNAT 261 (312)
Q Consensus 254 ~v~iwd~~ 261 (312)
.+..|..+
T Consensus 197 ~l~~Yky~ 204 (418)
T PF14727_consen 197 TLECYKYQ 204 (418)
T ss_pred eEEEecHH
Confidence 99998764
No 454
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=84.56 E-value=21 Score=29.40 Aligned_cols=180 Identities=9% Similarity=0.053 Sum_probs=103.6
Q ss_pred eeEEEEeeCCcEEEEecCCC--eEEEEEccCceeeeeeccc-ccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeee
Q 047355 62 VRTAKFVAREHWIVCGSDDK--FIRVFDYNTMASVKEFEAH-EDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQ 138 (312)
Q Consensus 62 v~~~~~~~~~~~l~~g~~dg--~i~iwd~~~~~~~~~~~~h-~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~ 138 (312)
...+.|..++.++-+.+.-| .|+.+|+++++..+...-. .-.--.++...+ ++..-.=.++...+||..+- +...
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d-~l~qLTWk~~~~f~yd~~tl-~~~~ 124 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD-KLYQLTWKEGTGFVYDPNTL-KKIG 124 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT-EEEEEESSSSEEEEEETTTT-EEEE
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECC-EEEEEEecCCeEEEEccccc-eEEE
Confidence 34456667777776666554 7999999998765544322 222234454433 33334556788999997653 4444
Q ss_pred EecCCccceEEEEeCCCCCCEEEEEeCCCeEEEEEcCCCcceeeecccc--c---ceeEEEEEEcCCceEEEEEeCCCeE
Q 047355 139 TFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHE--K---GINCIDYFITSDKVYLITGSDDFTV 213 (312)
Q Consensus 139 ~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~~~--~---~v~~~~~~~~~~~~~l~sg~~dg~i 213 (312)
.+.-. ..=+.+.. ++..++.......++.+|..+.+....+.... . .++.+.+. +|...|=--....|
T Consensus 125 ~~~y~-~EGWGLt~---dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i---~G~IyANVW~td~I 197 (264)
T PF05096_consen 125 TFPYP-GEGWGLTS---DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI---NGKIYANVWQTDRI 197 (264)
T ss_dssp EEE-S-SS--EEEE---CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE---TTEEEEEETTSSEE
T ss_pred EEecC-CcceEEEc---CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE---cCEEEEEeCCCCeE
Confidence 44322 22244443 23455555556678999988766655554322 2 34556553 56666666667788
Q ss_pred EEEeCCCCeEEEEecc------------c---ccCeEEEEEeCCCcEEEEEe
Q 047355 214 KVWDYETKTCVQILEG------------H---TNNVTAVCFHPELRIIITAS 250 (312)
Q Consensus 214 ~vwd~~~~~~~~~~~~------------h---~~~i~~l~~~~~~~~l~s~s 250 (312)
...|..+++....+.. + ..-.+.|||+|....|...+
T Consensus 198 ~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 198 VRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 8889999988776531 1 23478999999776665555
No 455
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=83.80 E-value=0.11 Score=45.64 Aligned_cols=140 Identities=14% Similarity=0.201 Sum_probs=88.4
Q ss_pred EEEEeCCCCCCEEEEEeCCCeEEEEEcCCCcceeeecccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEe
Q 047355 148 MQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQIL 227 (312)
Q Consensus 148 ~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~ 227 (312)
....|.|.+.+ ++.++.+-.+..||-....... ... +...-.++|... ....++.+...+.+++||+.+..--+.-
T Consensus 38 i~~~w~~e~~n-lavaca~tiv~~YD~agq~~le-~n~-tg~aldm~wDke-gdvlavlAek~~piylwd~n~eytqqLE 113 (615)
T KOG2247|consen 38 IIHRWRPEGHN-LAVACANTIVIYYDKAGQVILE-LNP-TGKALDMAWDKE-GDVLAVLAEKTGPIYLWDVNSEYTQQLE 113 (615)
T ss_pred ceeeEecCCCc-eehhhhhhHHHhhhhhcceecc-cCC-chhHhhhhhccc-cchhhhhhhcCCCeeechhhhhhHHHHh
Confidence 34556676656 6666677888888865332211 111 111122233221 1234555667889999998643211111
Q ss_pred --cccccCeEEEEEeCCCcEEEEEeCCCcEEEEeCCCcceeeecccCccceEEEEEecCCCeEEEEec
Q 047355 228 --EGHTNNVTAVCFHPELRIIITASEDGTILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGCD 293 (312)
Q Consensus 228 --~~h~~~i~~l~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 293 (312)
..|.... +.|++..+.++-|-..|.++|++-.+.+.+..+..|..++.++++.+.+..+..+++
T Consensus 114 ~gg~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~dcd 179 (615)
T KOG2247|consen 114 SGGTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCDCD 179 (615)
T ss_pred ccCcchHHH--HhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeecCcH
Confidence 1122232 688888888888889999999999888888777778999999999998766654443
No 456
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=83.59 E-value=12 Score=33.34 Aligned_cols=164 Identities=9% Similarity=0.083 Sum_probs=89.5
Q ss_pred hhcccCcEEEEEEcCCCCeEEEEecCCeEEEEeccCCceeee-E-EecCC----cee-EEEEeeCCcEEEEecCCCeEEE
Q 047355 13 FIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKS-V-KVTDS----PVR-TAKFVAREHWIVCGSDDKFIRV 85 (312)
Q Consensus 13 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~-~-~~~~~----~v~-~~~~~~~~~~l~~g~~dg~i~i 85 (312)
+......|..+-..|||+.|..-.. ..+.+++++++..... + ....+ .|+ .......+..++.+..||.|.-
T Consensus 216 L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQ 294 (733)
T COG4590 216 LSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQ 294 (733)
T ss_pred cCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceee
Confidence 4445567888999999998876554 6788888876533211 1 11011 111 1122344667889999999998
Q ss_pred E-EccCce-----eeeeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCE
Q 047355 86 F-DYNTMA-----SVKEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNT 159 (312)
Q Consensus 86 w-d~~~~~-----~~~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 159 (312)
| |..... .+..++-...++.-+.-....+-+++-+.+|++.++....... ..++........+.++|.. +.
T Consensus 295 WFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~--lL~~~~~~~~~~~~~Sp~~-~~ 371 (733)
T COG4590 295 WFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKL--LLFERAYQAPQLVAMSPNQ-AY 371 (733)
T ss_pred eeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcc--eehhhhhcCcceeeeCccc-ch
Confidence 8 333221 1111221223343343333345566777788877775322111 1112222234456788754 44
Q ss_pred EEEEeCCCeEEEEEcCCCccee
Q 047355 160 FASASLDGTIQIWNMDSSAAKF 181 (312)
Q Consensus 160 ~~s~s~dg~v~iwd~~~~~~~~ 181 (312)
+++ -..|.++++.+++..+..
T Consensus 372 Ll~-e~~gki~~~~l~Nr~Pei 392 (733)
T COG4590 372 LLS-EDQGKIRLAQLENRNPEI 392 (733)
T ss_pred hee-ecCCceEEEEecCCCCCc
Confidence 443 345789999988765543
No 457
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=83.15 E-value=23 Score=32.04 Aligned_cols=58 Identities=21% Similarity=0.265 Sum_probs=45.7
Q ss_pred CCcEEEEEeCCCcEEEEeCCCcceeeecccCccceEEEEEecCCCeEEEEecCCeEEE
Q 047355 242 ELRIIITASEDGTILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGCDNGTLIV 299 (312)
Q Consensus 242 ~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~v 299 (312)
...++|.+|..|-||+||--..+....+.+-...+..+..+.+|+.|++.|..-.+.+
T Consensus 572 esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~yllL~ 629 (776)
T COG5167 572 ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKNYLLLT 629 (776)
T ss_pred cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecceEEEE
Confidence 4568999999999999995444555556666778889999999999998887765543
No 458
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=83.05 E-value=9.3 Score=25.65 Aligned_cols=53 Identities=15% Similarity=0.105 Sum_probs=32.7
Q ss_pred EeCCCcEEEEeCCCcceeeecccCccceEEEEEecCCCeEEEEec--CCeEEEEec
Q 047355 249 ASEDGTILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGCD--NGTLIVKIG 302 (312)
Q Consensus 249 ~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~g~i~v~~~ 302 (312)
+..+|.+.-||..+++.. .+...+.-...|+.++|++.++.+=. -...++|+.
T Consensus 33 ~~~~GRll~ydp~t~~~~-vl~~~L~fpNGVals~d~~~vlv~Et~~~Ri~rywl~ 87 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKETT-VLLDGLYFPNGVALSPDESFVLVAETGRYRILRYWLK 87 (89)
T ss_dssp T---EEEEEEETTTTEEE-EEEEEESSEEEEEE-TTSSEEEEEEGGGTEEEEEESS
T ss_pred CCCCcCEEEEECCCCeEE-EehhCCCccCeEEEcCCCCEEEEEeccCceEEEEEEe
Confidence 344678888998876543 34445667789999999997776543 334555543
No 459
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=82.49 E-value=4.2 Score=20.39 Aligned_cols=26 Identities=15% Similarity=0.313 Sum_probs=20.7
Q ss_pred cCeEEEEEeCCCcEEEEEeCCCcEEEEe
Q 047355 232 NNVTAVCFHPELRIIITASEDGTILIWN 259 (312)
Q Consensus 232 ~~i~~l~~~~~~~~l~s~s~dg~v~iwd 259 (312)
+.|.+++..+ .+++.+.+-+.+|+|.
T Consensus 2 E~i~aia~g~--~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 2 EEIEAIAAGD--SWVAVATSAGYLRIFS 27 (27)
T ss_pred ceEEEEEccC--CEEEEEeCCCeEEecC
Confidence 4577888766 5889999899999973
No 460
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=81.89 E-value=27 Score=28.66 Aligned_cols=187 Identities=14% Similarity=0.101 Sum_probs=95.8
Q ss_pred ceeEEEEecCCCEEEEEe---CCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeCCCeEEEEE-cCCCc
Q 047355 103 YIRSLAVHPTFPFVLTAS---DDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWN-MDSSA 178 (312)
Q Consensus 103 ~i~~~~~~~~~~~l~t~s---~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd-~~~~~ 178 (312)
.+.+.+++++++.++... ....+.++.... .......+ ..+..-.|.+. +...+....+...+++. .....
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~--~~~~~~~g--~~l~~PS~d~~-g~~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGG--PVRPVLTG--GSLTRPSWDPD-GWVWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCC--cceeeccC--CccccccccCC-CCEEEEEcCCCceEEEEecCCCc
Confidence 688899999998776554 233455554332 22222222 24555677775 44555545555556653 22222
Q ss_pred c-eeeecccc--cceeEEEEEEcCCceEEEEEe---CCCeEEEEeCC---CC------eEEEEecccccCeEEEEEeCCC
Q 047355 179 A-KFTLDAHE--KGINCIDYFITSDKVYLITGS---DDFTVKVWDYE---TK------TCVQILEGHTNNVTAVCFHPEL 243 (312)
Q Consensus 179 ~-~~~~~~~~--~~v~~~~~~~~~~~~~l~sg~---~dg~i~vwd~~---~~------~~~~~~~~h~~~i~~l~~~~~~ 243 (312)
. ...+.... ..|..+. +++||..++.-. .++.|.+--+. .+ ............++.++|.+++
T Consensus 100 ~~~~~v~~~~~~~~I~~l~--vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~ 177 (253)
T PF10647_consen 100 GEPVEVDWPGLRGRITALR--VSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDS 177 (253)
T ss_pred ceeEEecccccCCceEEEE--ECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCC
Confidence 1 11222211 1566555 688888777654 35677766432 22 1122222335679999999999
Q ss_pred cEEEEEeCCCc-EEE-EeCCCcceeeecccCccceEEEEEecCCCeEEEEecCCeE
Q 047355 244 RIIITASEDGT-ILI-WNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGCDNGTL 297 (312)
Q Consensus 244 ~~l~s~s~dg~-v~i-wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i 297 (312)
.+++.+...+. +.. ... .+.....+......+..++...+...++...+++..
T Consensus 178 ~L~V~~~~~~~~~~~~v~~-dG~~~~~l~~~~~~~~v~a~~~~~~~~~~t~~~~~~ 232 (253)
T PF10647_consen 178 TLVVLGRSAGGPVVRLVSV-DGGPSTPLPSVNLGVPVVAVAASPSTVYVTDDGGVL 232 (253)
T ss_pred EEEEEeCCCCCceeEEEEc-cCCcccccCCCCCCcceEEeeCCCcEEEEECCCcEE
Confidence 88776665544 333 332 233333333333333344444444444444444433
No 461
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=81.57 E-value=30 Score=28.96 Aligned_cols=92 Identities=10% Similarity=0.146 Sum_probs=57.7
Q ss_pred CeEEEEeCCCCeEEEEecccccCeEEEEEeCCCcEEEEEe------CCCcEEEEeCCCcceeeeccc-----CccceEEE
Q 047355 211 FTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITAS------EDGTILIWNATTFRLQNTLSS-----GLERVWSI 279 (312)
Q Consensus 211 g~i~vwd~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~s------~dg~v~iwd~~~~~~~~~~~~-----~~~~v~~~ 279 (312)
..|.+||..+.+-...-.+-.+.|+.+.|..+.++++.|. ....+..||..+..- ..+.. -...|..+
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w-~~~~~~~s~~ipgpv~a~ 94 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW-SSLGGGSSNSIPGPVTAL 94 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee-eecCCcccccCCCcEEEE
Confidence 3589999887776665556678899999997777777775 456788999876432 22222 23567666
Q ss_pred EEe-cCCCeEE-EEe-cCCeEEEEecc
Q 047355 280 GYK-KGSNQVA-FGC-DNGTLIVKIGN 303 (312)
Q Consensus 280 ~~~-~~~~~l~-~~~-~~g~i~v~~~~ 303 (312)
.+. .|+..+. +|. .+|.-.|...+
T Consensus 95 ~~~~~d~~~~~~aG~~~~g~~~l~~~d 121 (281)
T PF12768_consen 95 TFISNDGSNFWVAGRSANGSTFLMKYD 121 (281)
T ss_pred EeeccCCceEEEeceecCCCceEEEEc
Confidence 664 3443333 333 35544444444
No 462
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=81.37 E-value=22 Score=29.79 Aligned_cols=71 Identities=8% Similarity=0.240 Sum_probs=47.8
Q ss_pred CeEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEec------CCCeEEEEEccCceeeeeecc-----cccceeEE
Q 047355 39 GTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGS------DDKFIRVFDYNTMASVKEFEA-----HEDYIRSL 107 (312)
Q Consensus 39 g~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~------~dg~i~iwd~~~~~~~~~~~~-----h~~~i~~~ 107 (312)
..|.+||....+....-..-.+.|..+.|..+.+.++.|. ....+..||.++.. ...+.. -.++|..+
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~-w~~~~~~~s~~ipgpv~a~ 94 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT-WSSLGGGSSNSIPGPVTAL 94 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe-eeecCCcccccCCCcEEEE
Confidence 4689999887655544444567899999997777777664 45678889987753 333333 23677777
Q ss_pred EEe
Q 047355 108 AVH 110 (312)
Q Consensus 108 ~~~ 110 (312)
.+.
T Consensus 95 ~~~ 97 (281)
T PF12768_consen 95 TFI 97 (281)
T ss_pred Eee
Confidence 763
No 463
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=80.95 E-value=26 Score=27.85 Aligned_cols=49 Identities=10% Similarity=0.170 Sum_probs=36.2
Q ss_pred cEEEEecCCCeEEEEEccC--ceeeeeecccccceeEEEEecCCCEEEEEeC
Q 047355 72 HWIVCGSDDKFIRVFDYNT--MASVKEFEAHEDYIRSLAVHPTFPFVLTASD 121 (312)
Q Consensus 72 ~~l~~g~~dg~i~iwd~~~--~~~~~~~~~h~~~i~~~~~~~~~~~l~t~s~ 121 (312)
+.|+.+.....|.+|++.. ......+..- +.|..+.++..|.+++|--.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~ 79 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEE 79 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEe
Confidence 5666656778899999883 2344555444 67899999999999998744
No 464
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=80.85 E-value=7.2 Score=30.91 Aligned_cols=49 Identities=14% Similarity=0.196 Sum_probs=37.0
Q ss_pred cEEEEEeCCCcEEEEeCC--CcceeeecccCccceEEEEEecCCCeEEEEec
Q 047355 244 RIIITASEDGTILIWNAT--TFRLQNTLSSGLERVWSIGYKKGSNQVAFGCD 293 (312)
Q Consensus 244 ~~l~s~s~dg~v~iwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 293 (312)
..|+.+...+.|.+|++. ..++..++... ++|+.+.++..|++|++-=.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~ 79 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEE 79 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEe
Confidence 344444666789999987 35566677655 88999999999999997544
No 465
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=79.53 E-value=36 Score=28.59 Aligned_cols=270 Identities=9% Similarity=0.020 Sum_probs=128.3
Q ss_pred cEEEEEEcCCCCeEEEEecCCeEEEEeccCCceeeeEEecCC-ceeEEEEeeCCcEEEEecCCCeEEEEEccCcee---e
Q 047355 19 RVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDS-PVRTAKFVAREHWIVCGSDDKFIRVFDYNTMAS---V 94 (312)
Q Consensus 19 ~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~~---~ 94 (312)
-+..+.++ +++...+.++.-++|.|+.............. ...- .+.-.|++.+.+..|.-+.+.|+.+... .
T Consensus 88 l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyay-gv~vsGn~aYVadlddgfLivdvsdpssP~la 164 (370)
T COG5276 88 LFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAY-GVYVSGNYAYVADLDDGFLIVDVSDPSSPQLA 164 (370)
T ss_pred hhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEE-EEEecCCEEEEeeccCcEEEEECCCCCCceee
Confidence 34445553 56777777888899999876544333322211 2222 2334588888888555566778765432 2
Q ss_pred eeecccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEecCCcc-ceEEEEeCCCCCCEEEEEeCCCeEEEEE
Q 047355 95 KEFEAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSH-YVMQSAFNPKDLNTFASASLDGTIQIWN 173 (312)
Q Consensus 95 ~~~~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~s~s~dg~v~iwd 173 (312)
..+......-..++++ |++-..+..|+-+.+-|+....++...-.-... .+..+..++ + +....-.+.-+.+-|
T Consensus 165 grya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsd-n--r~y~vvy~egvlivd 239 (370)
T COG5276 165 GRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSD-N--RAYLVVYDEGVLIVD 239 (370)
T ss_pred eeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecC-C--eeEEEEcccceEEEe
Confidence 2333333444556665 455556678999999998765443221111111 233333333 2 222222334456666
Q ss_pred cCCCcceeeeccc-ccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeE--E-EEecccccCeEEEEEeCCCcEEEEE
Q 047355 174 MDSSAAKFTLDAH-EKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTC--V-QILEGHTNNVTAVCFHPELRIIITA 249 (312)
Q Consensus 174 ~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~--~-~~~~~h~~~i~~l~~~~~~~~l~s~ 249 (312)
....+....+..- ...+.++.-++-+ +.+......+..+.+-|.++... + ..+......-..+.... .++..+
T Consensus 240 ~s~~ssp~~~gsyet~~p~~~s~v~Vs-~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~ay~--~y~yia 316 (370)
T COG5276 240 VSGPSSPTVFGSYETSNPVSISTVPVS-GEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRAYG--NYNYIA 316 (370)
T ss_pred cCCCCCceEeeccccCCcccccceecc-cceeeeeccccCceeEeccCCCCCchhccccCCCccccceEEec--CeeEec
Confidence 6655433333211 1112222111111 22333333344455555543211 1 11111111222333222 223333
Q ss_pred eCCCcEEEEeCCCcceeeecccCccceEEEEEecCCCeEEEEecCCeEEEE
Q 047355 250 SEDGTILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGCDNGTLIVK 300 (312)
Q Consensus 250 s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~v~ 300 (312)
..+ ...+-+....++.......+..+.+.+.+-+.+.+-+...++-+.++
T Consensus 317 dkn-~g~vV~~s~~s~m~~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~ 366 (370)
T COG5276 317 DKN-TGAVVDASPPSMMDKRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSII 366 (370)
T ss_pred cCC-ceEEEeCCChhhcccccCcceEeeecceEEEeeEEEEeecCCCEEEE
Confidence 333 44445555544444444555566777777777766666666665554
No 466
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=78.46 E-value=41 Score=28.65 Aligned_cols=22 Identities=0% Similarity=-0.118 Sum_probs=13.4
Q ss_pred CCEEEEEeCCC----eEEEEEcCCCc
Q 047355 157 LNTFASASLDG----TIQIWNMDSSA 178 (312)
Q Consensus 157 ~~~~~s~s~dg----~v~iwd~~~~~ 178 (312)
..+.+.|+.++ .+..||..+.+
T Consensus 172 ~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 172 NELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred CEEEEEcCCCCccccceEEEecCCCe
Confidence 35666666554 24578877654
No 467
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=78.43 E-value=46 Score=29.17 Aligned_cols=12 Identities=0% Similarity=0.205 Sum_probs=8.5
Q ss_pred CCCcEEEEEeCC
Q 047355 241 PELRIIITASED 252 (312)
Q Consensus 241 ~~~~~l~s~s~d 252 (312)
.++++++.|+.+
T Consensus 278 ~~~~iyv~GG~~ 289 (376)
T PRK14131 278 SNGVLLVAGGAN 289 (376)
T ss_pred ECCEEEEeeccC
Confidence 466788888754
No 468
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=77.81 E-value=36 Score=27.60 Aligned_cols=142 Identities=10% Similarity=0.103 Sum_probs=80.6
Q ss_pred cEEEEEEcCCCCeEEEEec-C---------CeEEEEeccCCceeeeEEecCCceeEEEEeeCCcE-EEEecCCCeEEEEE
Q 047355 19 RVKSVDFHPTQPWVLASLY-S---------GTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHW-IVCGSDDKFIRVFD 87 (312)
Q Consensus 19 ~i~~~~~~~~~~~l~~~~~-d---------g~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~g~~dg~i~iwd 87 (312)
+.+.--.+|+|++ ..|.+ | |.++.|-.... +..+...-.--+.+.|..+.+. .++-+.+-+|..||
T Consensus 110 R~NDgkvdP~Gry-y~GtMad~~~~le~~~g~Ly~~~~~h~--v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~d 186 (310)
T KOG4499|consen 110 RLNDGKVDPDGRY-YGGTMADFGDDLEPIGGELYSWLAGHQ--VELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYD 186 (310)
T ss_pred ccccCccCCCCce-eeeeeccccccccccccEEEEeccCCC--ceeeehhccCCccccccccCcEEEEEccCceEEeeee
Confidence 4455556899988 44432 2 45556654322 1122222222344566655444 44566777888887
Q ss_pred c--cCce-----eeeeecc---ccc-ceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEecCCccceEEEEeCCCC
Q 047355 88 Y--NTMA-----SVKEFEA---HED-YIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKD 156 (312)
Q Consensus 88 ~--~~~~-----~~~~~~~---h~~-~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 156 (312)
. .++. .+..++. .+. .--.+++..+|.+.++.-..++|...|..++ +.+..+.-....+.+++|-.++
T Consensus 187 yd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tG-K~L~eiklPt~qitsccFgGkn 265 (310)
T KOG4499|consen 187 YDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTG-KILLEIKLPTPQITSCCFGGKN 265 (310)
T ss_pred cCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCC-cEEEEEEcCCCceEEEEecCCC
Confidence 4 3332 1112211 111 1223555667787788888889999998776 4556666667888999998766
Q ss_pred CCEEEEEe
Q 047355 157 LNTFASAS 164 (312)
Q Consensus 157 ~~~~~s~s 164 (312)
...+.+..
T Consensus 266 ~d~~yvT~ 273 (310)
T KOG4499|consen 266 LDILYVTT 273 (310)
T ss_pred ccEEEEEe
Confidence 55555443
No 469
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=77.60 E-value=53 Score=29.44 Aligned_cols=268 Identities=13% Similarity=0.141 Sum_probs=127.0
Q ss_pred CCeEEEEecCCeEEEEeccCC-----ceeeeEEecCCceeEEEEeeCCcEEEEecCCCeEEEEEccCce----eeeeecc
Q 047355 29 QPWVLASLYSGTVCIWNYHSQ-----TTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTMA----SVKEFEA 99 (312)
Q Consensus 29 ~~~l~~~~~dg~v~iw~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~~----~~~~~~~ 99 (312)
|+.-+--..||+=..|.+... ..+++......++.=..-.+...+.+.|..||.+.+....-.. +-..+..
T Consensus 80 G~~a~l~~N~g~Gvf~~l~~~~aPAgs~I~~qal~~ppv~wa~~~~gqp~~alglsngqv~v~qp~~s~t~p~pg~~Fp~ 159 (733)
T COG4590 80 GENAFLMSNDGVGVFWSLRSVSAPAGSPIQTQALGFPPVLWAQTPPGQPWFALGLSNGQVAVVQPQLSHTMPTPGREFPP 159 (733)
T ss_pred cceeEEEecCCccEEEEecccCCCCCCchhhhhcCCCCcccccCCCCCceEEEeccCCeEEEEeccccccCCCCCccCCC
Confidence 333333345566566665322 2222222223333222222356688889999999988643111 1111111
Q ss_pred cccce-----eEEEEecCCCEEEEEeCCCcEEEEeCCCCc-----------eeeeEecCCccceEEEEeCCCCCCEEEEE
Q 047355 100 HEDYI-----RSLAVHPTFPFVLTASDDKLIKLWDWEKNW-----------ECTQTFEGHSHYVMQSAFNPKDLNTFASA 163 (312)
Q Consensus 100 h~~~i-----~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~~~~s~ 163 (312)
...++ -...-||..++.+....+....++|..... +.+..+......+..+-..| ++..+..-
T Consensus 160 g~~p~aLd~qgr~leh~~~~lalA~~~~~qf~~~~~t~~~~~L~g~~t~q~e~i~~L~~~~~~v~qllL~P-dg~~LYv~ 238 (733)
T COG4590 160 GLEPLALDEQGRLLEHPLQQLALALTAEAQFATYDNTQQIQILRGDRTTQQEIIRLLSVPFSDVSQLLLTP-DGKTLYVR 238 (733)
T ss_pred CCCccccCcccCcccchHHHhhhccchhhHHHHhhhhhhhhhhhcccCchhhhhhhcCCCccchHhhEECC-CCCEEEEe
Confidence 11110 001112222334445555555555432211 11111222233444455566 44555554
Q ss_pred eCCCeEEEEEcCCCccee--eeccccc----cee-EEEEEEcCCceEEEEEeCCCeEEEE-eCCCC-e----EEEEeccc
Q 047355 164 SLDGTIQIWNMDSSAAKF--TLDAHEK----GIN-CIDYFITSDKVYLITGSDDFTVKVW-DYETK-T----CVQILEGH 230 (312)
Q Consensus 164 s~dg~v~iwd~~~~~~~~--~~~~~~~----~v~-~~~~~~~~~~~~l~sg~~dg~i~vw-d~~~~-~----~~~~~~~h 230 (312)
+. .++.++++.+..... ..+.... .|+ .+. .-..+..+..++.||-|.-| |.+.+ . .++.++-.
T Consensus 239 ~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~--lL~Gg~SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~ 315 (733)
T COG4590 239 TG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLY--LLSGGFSLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLA 315 (733)
T ss_pred cC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHH--HHhCceeEEEEcCCCceeeeeeeecCCCCcceeeeccccC
Confidence 43 678888886543221 1111001 111 110 12345668889999999877 44422 2 11222222
Q ss_pred ccCeEEEEEeCCCcEEEEEeCCCcEEEEeCCCcceeeecccCccceEEEEEecCCCeEEEEecCCeEEEEe
Q 047355 231 TNNVTAVCFHPELRIIITASEDGTILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAFGCDNGTLIVKI 301 (312)
Q Consensus 231 ~~~i~~l~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~v~~ 301 (312)
..++.-+.-..+.+-+++-...|++.++-....+.. -++...+...-+++||.++.|++-...+.-..+.
T Consensus 316 pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~l-L~~~~~~~~~~~~~Sp~~~~Ll~e~~gki~~~~l 385 (733)
T COG4590 316 PAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLL-LFERAYQAPQLVAMSPNQAYLLSEDQGKIRLAQL 385 (733)
T ss_pred cccceeeccccccceEEEEcCCCceeeeecccCcce-ehhhhhcCcceeeeCcccchheeecCCceEEEEe
Confidence 344544444445566888888999998875433321 1222233455678999999998655444444443
No 470
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=77.01 E-value=39 Score=27.61 Aligned_cols=89 Identities=17% Similarity=0.254 Sum_probs=49.0
Q ss_pred EEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEecC-C--CeEEEEEccC---ceeeeeec---ccccceeEEEEec
Q 047355 41 VCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSD-D--KFIRVFDYNT---MASVKEFE---AHEDYIRSLAVHP 111 (312)
Q Consensus 41 v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~-d--g~i~iwd~~~---~~~~~~~~---~h~~~i~~~~~~~ 111 (312)
-.+||+.+.+....-...+.-...-.+.++|++|.+|+. + ..+++++..+ .....+.. .....=-+...-|
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~ 127 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP 127 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence 357888776543322223333444567889999999875 2 4578887544 11111110 1111222344557
Q ss_pred CCCEEEEEeCCC-cEEEEe
Q 047355 112 TFPFVLTASDDK-LIKLWD 129 (312)
Q Consensus 112 ~~~~l~t~s~d~-~v~iwd 129 (312)
+|+.++.|+.+. +..+|.
T Consensus 128 DG~vlIvGG~~~~t~E~~P 146 (243)
T PF07250_consen 128 DGRVLIVGGSNNPTYEFWP 146 (243)
T ss_pred CCCEEEEeCcCCCcccccC
Confidence 899988887764 345554
No 471
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=76.08 E-value=46 Score=27.97 Aligned_cols=136 Identities=10% Similarity=0.088 Sum_probs=72.0
Q ss_pred eEEEEEcCCCcceeeeccc------ccceeEEEEEEcCC----ceEEEEEeCCCeEEEEeCCCCeEEEEecccc------
Q 047355 168 TIQIWNMDSSAAKFTLDAH------EKGINCIDYFITSD----KVYLITGSDDFTVKVWDYETKTCVQILEGHT------ 231 (312)
Q Consensus 168 ~v~iwd~~~~~~~~~~~~~------~~~v~~~~~~~~~~----~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~------ 231 (312)
.|.+||+.+.+.++++.-+ ....+.+.+...+. +...++-+..+-|.|+|+.+++..+.+..+.
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 4666777777665544221 23345554443222 3455666677789999999987766554321
Q ss_pred -------------cCeEEEEEeC---CCcEEEEEeCCCcEEEEeCCCccee--------------eecccCccceEEEEE
Q 047355 232 -------------NNVTAVCFHP---ELRIIITASEDGTILIWNATTFRLQ--------------NTLSSGLERVWSIGY 281 (312)
Q Consensus 232 -------------~~i~~l~~~~---~~~~l~s~s~dg~v~iwd~~~~~~~--------------~~~~~~~~~v~~~~~ 281 (312)
+.+..++.+| ++++|.-..-.+. ++|.+++..+. ..+..-..+.-.+++
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~-~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~ 193 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSR-KLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAI 193 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-S-EEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCC-cEEEEEHHHhhCccccccccccccceeccccCCCCceEEE
Confidence 2255666655 5555554443322 23333221110 011110123456677
Q ss_pred ecCCCeEEEEecCCeEEEEeccC
Q 047355 282 KKGSNQVAFGCDNGTLIVKIGNS 304 (312)
Q Consensus 282 ~~~~~~l~~~~~~g~i~v~~~~~ 304 (312)
+++|+...+--..+.|..|-++.
T Consensus 194 D~~G~ly~~~~~~~aI~~w~~~~ 216 (287)
T PF03022_consen 194 DPNGNLYFTDVEQNAIGCWDPDG 216 (287)
T ss_dssp ETTTEEEEEECCCTEEEEEETTT
T ss_pred CCCCcEEEecCCCCeEEEEeCCC
Confidence 78888888777777777777664
No 472
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=76.04 E-value=97 Score=31.69 Aligned_cols=141 Identities=13% Similarity=0.143 Sum_probs=79.9
Q ss_pred EEEeCCCeEEEEEcCCCcceeeecccccceeEEEEEEcCCc------eEEEEEeCCCeEEEEeC----CCCeEE-----E
Q 047355 161 ASASLDGTIQIWNMDSSAAKFTLDAHEKGINCIDYFITSDK------VYLITGSDDFTVKVWDY----ETKTCV-----Q 225 (312)
Q Consensus 161 ~s~s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~------~~l~sg~~dg~i~vwd~----~~~~~~-----~ 225 (312)
+-.+.|..+.+|+.+++.....+.+-...|-.+..+....| .++..-+.--.|.++-+ .++..- .
T Consensus 93 aWiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~ 172 (1311)
T KOG1900|consen 93 AWITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSF 172 (1311)
T ss_pred eEEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccce
Confidence 44556899999999986666556555555554443322112 11222222233444422 111110 1
Q ss_pred EecccccCeEEEEEeCCCcEEEEEeCCCcEEEEeCC----C---cc--------------ee---eecc-cCccceEEEE
Q 047355 226 ILEGHTNNVTAVCFHPELRIIITASEDGTILIWNAT----T---FR--------------LQ---NTLS-SGLERVWSIG 280 (312)
Q Consensus 226 ~~~~h~~~i~~l~~~~~~~~l~s~s~dg~v~iwd~~----~---~~--------------~~---~~~~-~~~~~v~~~~ 280 (312)
.+....-.|+++....+|+.+++|-. | .+|.+. . ++ +. ..+. .+.+.+..+.
T Consensus 173 ~i~~dg~~V~~I~~t~nGRIF~~G~d-g--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ 249 (1311)
T KOG1900|consen 173 KISVDGVSVNCITYTENGRIFFAGRD-G--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQIT 249 (1311)
T ss_pred eeecCCceEEEEEeccCCcEEEeecC-C--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeE
Confidence 12222456889998888887766654 4 445431 1 01 00 1122 4456788888
Q ss_pred EecCCCeEEEEecCCeEEEEeccC
Q 047355 281 YKKGSNQVAFGCDNGTLIVKIGNS 304 (312)
Q Consensus 281 ~~~~~~~l~~~~~~g~i~v~~~~~ 304 (312)
....-+.|-+=+..|++.++....
T Consensus 250 ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 250 IDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred eccccceeeeeccCceEEEEEccC
Confidence 888888899999999999887654
No 473
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=75.37 E-value=7.8 Score=19.88 Aligned_cols=24 Identities=29% Similarity=0.307 Sum_probs=19.4
Q ss_pred EEEEEeCCCcEEEEeCCCcceeee
Q 047355 245 IIITASEDGTILIWNATTFRLQNT 268 (312)
Q Consensus 245 ~l~s~s~dg~v~iwd~~~~~~~~~ 268 (312)
.++.++.+|.+..+|..+++.+.+
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWT 31 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEE
Confidence 577788899999999988876544
No 474
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=75.10 E-value=11 Score=22.75 Aligned_cols=32 Identities=16% Similarity=0.337 Sum_probs=21.3
Q ss_pred ceEEEEEecCCCeEEEEec-----CCeEEEEeccCCC
Q 047355 275 RVWSIGYKKGSNQVAFGCD-----NGTLIVKIGNSSG 306 (312)
Q Consensus 275 ~v~~~~~~~~~~~l~~~~~-----~g~i~v~~~~~~~ 306 (312)
++++++..|||+.|++|.. +....|.+.++-+
T Consensus 2 ~~~~~~~q~DGkIlv~G~~~~~~~~~~~~l~Rln~DG 38 (55)
T TIGR02608 2 RAYAVAVQSDGKILVAGYVDNSSGNNDFVLARLNADG 38 (55)
T ss_pred ceEEEEECCCCcEEEEEEeecCCCcccEEEEEECCCC
Confidence 4577888899999998853 3345555555443
No 475
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=73.85 E-value=8.1 Score=36.50 Aligned_cols=69 Identities=13% Similarity=0.297 Sum_probs=46.6
Q ss_pred ccCcEEEEEEcCCCCeEEEEecCCeEEEEeccCCceeeeEEecCCceeEEEEeeCCcEEEEecCCCeEEEEE
Q 047355 16 KSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIRVFD 87 (312)
Q Consensus 16 ~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd 87 (312)
...-+.++.-||.++-++.+..||+|++|++.+++..+...... |-..+.|...| |+++..|..+..|.
T Consensus 13 ~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~~~-p~~nlv~tnhg--l~~~tsdrr~la~~ 81 (1636)
T KOG3616|consen 13 EDEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEEAK-PKENLVFTNHG--LVTATSDRRALAWK 81 (1636)
T ss_pred ccceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhhcC-Cccceeeeccc--eEEEeccchhheee
Confidence 34567888889999999999999999999987665433322222 23344455443 66666666666664
No 476
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=73.23 E-value=41 Score=32.47 Aligned_cols=137 Identities=16% Similarity=0.186 Sum_probs=75.8
Q ss_pred EEEEEeCCCcEEEEeCCCC--ceeee-EecCCccceEEEEeCCCCCCEEEEEeCCCeEEE--------EEcCCCcceeee
Q 047355 115 FVLTASDDKLIKLWDWEKN--WECTQ-TFEGHSHYVMQSAFNPKDLNTFASASLDGTIQI--------WNMDSSAAKFTL 183 (312)
Q Consensus 115 ~l~t~s~d~~v~iwd~~~~--~~~~~-~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~i--------wd~~~~~~~~~~ 183 (312)
.+..|+.++.+-++.-... .+... .+......+..+.+.+ ..+..|..||++-. ||.. +...+
T Consensus 549 Tic~gtq~ssisissss~~s~ke~~~~~~spe~~~v~~l~~ss---~Slgagl~dgt~a~y~rap~gSwd~e---p~~~~ 622 (925)
T KOG3522|consen 549 TICLGTQTSSISISSSSLDSIKEVTSEPPSPEHESVKLLLFSS---GSLGAGLIDGTLAVYGRAPSGSWDGE---PNISI 622 (925)
T ss_pred cccccCccceeEEeeccCCcccceeccCCCCchhhhhhhhccc---cccccCccCCccccccCCCCCCCCCC---Ccccc
Confidence 4667888888888764311 11111 1122223444444443 23555556666544 4432 11111
Q ss_pred cccccceeEEEEEEcCCceEEEEEeCCCeEEEEeCCCCeEEEEeccc---ccCeEEEEEeCCCcEEEEEeCCCcEEEEeC
Q 047355 184 DAHEKGINCIDYFITSDKVYLITGSDDFTVKVWDYETKTCVQILEGH---TNNVTAVCFHPELRIIITASEDGTILIWNA 260 (312)
Q Consensus 184 ~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h---~~~i~~l~~~~~~~~l~s~s~dg~v~iwd~ 260 (312)
.....++....+. .-++-|+.+|.|.++...+......+..| ...|+++.+..++-+++-.+.| ++++++.
T Consensus 623 ~~g~lPvrsla~~-----ed~~was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~~gVwvafasG~-~~rlfht 696 (925)
T KOG3522|consen 623 PTGSLPVRSLAFQ-----EDFVWASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLDNGVWVAFASGD-EERLFHT 696 (925)
T ss_pred ccCCccccchhhh-----hceeeeecCCceEEEechhccccchhHHHHhhcceEEEEEeeCCceEEEEcCCC-EEEEecc
Confidence 2222344444321 22566778999999998876666555544 4569999998888777666655 5566666
Q ss_pred CCc
Q 047355 261 TTF 263 (312)
Q Consensus 261 ~~~ 263 (312)
.+.
T Consensus 697 etl 699 (925)
T KOG3522|consen 697 ETL 699 (925)
T ss_pred ccc
Confidence 553
No 477
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=73.04 E-value=53 Score=30.01 Aligned_cols=69 Identities=7% Similarity=0.077 Sum_probs=43.4
Q ss_pred CeEEEEEeCCCcEEEEEeCCCcEEEEeCCCcceeeeccc--------------------CccceEEEEEecCC---CeEE
Q 047355 233 NVTAVCFHPELRIIITASEDGTILIWNATTFRLQNTLSS--------------------GLERVWSIGYKKGS---NQVA 289 (312)
Q Consensus 233 ~i~~l~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~--------------------~~~~v~~~~~~~~~---~~l~ 289 (312)
.|..+..++.|..++-.|.+|.+.+.=.+.+..-..++. ..-.+...+|+|+. ..|.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 477888899999999999999876643222111111111 11235667788875 5677
Q ss_pred EEecCCeEEEEe
Q 047355 290 FGCDNGTLIVKI 301 (312)
Q Consensus 290 ~~~~~g~i~v~~ 301 (312)
.-+.|.+++|--
T Consensus 185 iL~sdnviRiy~ 196 (741)
T KOG4460|consen 185 LLTSDNVIRIYS 196 (741)
T ss_pred EEecCcEEEEEe
Confidence 777777777653
No 478
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=71.56 E-value=35 Score=26.08 Aligned_cols=30 Identities=20% Similarity=0.120 Sum_probs=25.3
Q ss_pred ceEEEEEecCC------CeEEEEecCCeEEEEeccC
Q 047355 275 RVWSIGYKKGS------NQVAFGCDNGTLIVKIGNS 304 (312)
Q Consensus 275 ~v~~~~~~~~~------~~l~~~~~~g~i~v~~~~~ 304 (312)
.+.+++|||.| ..|++-+.+|.+.|.....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 78899999965 6799999999999887664
No 479
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=71.49 E-value=11 Score=18.80 Aligned_cols=25 Identities=12% Similarity=0.056 Sum_probs=18.3
Q ss_pred ceEEEEEecCCCeEEEEecCCeEEE
Q 047355 275 RVWSIGYKKGSNQVAFGCDNGTLIV 299 (312)
Q Consensus 275 ~v~~~~~~~~~~~l~~~~~~g~i~v 299 (312)
....++..++|+.+++-+.+.+|++
T Consensus 3 ~P~gvav~~~g~i~VaD~~n~rV~v 27 (28)
T PF01436_consen 3 YPHGVAVDSDGNIYVADSGNHRVQV 27 (28)
T ss_dssp SEEEEEEETTSEEEEEECCCTEEEE
T ss_pred CCcEEEEeCCCCEEEEECCCCEEEE
Confidence 3567788888888887777777664
No 480
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=70.08 E-value=74 Score=27.73 Aligned_cols=229 Identities=12% Similarity=0.054 Sum_probs=0.0
Q ss_pred CcEEEEecCCCeEEEEEccCceeeeeecccc--cceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEecCCc-cce
Q 047355 71 EHWIVCGSDDKFIRVFDYNTMASVKEFEAHE--DYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHS-HYV 147 (312)
Q Consensus 71 ~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~--~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~-~~v 147 (312)
+..++.+..+|.|...|.+++..+-....-. ..+.+=....+++ +..++.++.+..+|..+. +....+.... ...
T Consensus 68 dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G-~~~W~~~~~~~~~~ 145 (370)
T COG1520 68 DGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTG-TLVWSRNVGGSPYY 145 (370)
T ss_pred CCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCC-cEEEEEecCCCeEE
Q ss_pred EEEEeCCCCCCEEEEEeCCCeEEEEEcCCCcceeeecccc-cceeEEEEEEcCCceEEEEEeC-CCeEEEEeCCCCeEEE
Q 047355 148 MQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDAHE-KGINCIDYFITSDKVYLITGSD-DFTVKVWDYETKTCVQ 225 (312)
Q Consensus 148 ~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~sg~~-dg~i~vwd~~~~~~~~ 225 (312)
........ ..+...+.++.+...|..++..+...+... ....-.......++..++.... ++.+.-.|.+++...-
T Consensus 146 ~~~~v~~~--~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~~~w 223 (370)
T COG1520 146 ASPPVVGD--GTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGTLKW 223 (370)
T ss_pred ecCcEEcC--cEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCCcceEEEEEccCCcEee
Q ss_pred E----ecccccCe--EEEEEeC---CCcEEEEEeCCCcEEEEeCCCcceeeeccc----CccceEEEEEecCCCeEEEEe
Q 047355 226 I----LEGHTNNV--TAVCFHP---ELRIIITASEDGTILIWNATTFRLQNTLSS----GLERVWSIGYKKGSNQVAFGC 292 (312)
Q Consensus 226 ~----~~~h~~~i--~~l~~~~---~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~ 292 (312)
. ...-...+ +.....+ .+.-+..++.++.+...|..+++.+.+... ...+++.....-
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~~~~~~~~~~~~~~~~--------- 294 (370)
T COG1520 224 SQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAGGSVQGSGLYTTPVAG--------- 294 (370)
T ss_pred eeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecccEeccCCeeEEeecC---------
Q ss_pred cCCeEEEEeccCC--CCccccC
Q 047355 293 DNGTLIVKIGNSS--GCDSVNC 312 (312)
Q Consensus 293 ~~g~i~v~~~~~~--~~~~~~~ 312 (312)
.+|.+.+...... .+.+..|
T Consensus 295 ~dG~v~~~~~~~~~~~~~~~~~ 316 (370)
T COG1520 295 ADGKVYIGFTDNDGRGSGSLYA 316 (370)
T ss_pred CCccEEEEEeccccccccceEE
No 481
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=69.83 E-value=15 Score=34.83 Aligned_cols=60 Identities=15% Similarity=0.299 Sum_probs=42.3
Q ss_pred EcCCceEEEEEeCCCeEEEEeCCCCeEEEEecccccCeEEEEEeCCCcEEEEEeCCCcEEEEe
Q 047355 197 ITSDKVYLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITASEDGTILIWN 259 (312)
Q Consensus 197 ~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~s~dg~v~iwd 259 (312)
..|.+..++.++.||.|++|+.......+... ...+-..+.|...| |++..+|+++.-|.
T Consensus 22 shp~~~s~v~~~~d~si~lfn~~~r~qski~~-~~~p~~nlv~tnhg--l~~~tsdrr~la~~ 81 (1636)
T KOG3616|consen 22 SHPGGQSFVLAHQDGSIILFNFIPRRQSKICE-EAKPKENLVFTNHG--LVTATSDRRALAWK 81 (1636)
T ss_pred ecCCCceEEEEecCCcEEEEeecccchhhhhh-hcCCccceeeeccc--eEEEeccchhheee
Confidence 45788889999999999999976443322211 23345567777665 77788888888886
No 482
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=67.94 E-value=15 Score=19.81 Aligned_cols=27 Identities=19% Similarity=0.326 Sum_probs=21.6
Q ss_pred EEEEeCCCcEEEEeCCCcceeeecccC
Q 047355 246 IITASEDGTILIWNATTFRLQNTLSSG 272 (312)
Q Consensus 246 l~s~s~dg~v~iwd~~~~~~~~~~~~~ 272 (312)
+..++.||.|+..|..+++.+......
T Consensus 3 v~~~~~~g~l~AlD~~TG~~~W~~~~~ 29 (38)
T PF01011_consen 3 VYVGTPDGYLYALDAKTGKVLWKFQTG 29 (38)
T ss_dssp EEEETTTSEEEEEETTTTSEEEEEESS
T ss_pred EEEeCCCCEEEEEECCCCCEEEeeeCC
Confidence 556689999999999999887766543
No 483
>PLN02153 epithiospecifier protein
Probab=67.63 E-value=80 Score=27.15 Aligned_cols=22 Identities=14% Similarity=0.141 Sum_probs=13.6
Q ss_pred CCcEEEEecCC-----CeEEEEEccCc
Q 047355 70 REHWIVCGSDD-----KFIRVFDYNTM 91 (312)
Q Consensus 70 ~~~~l~~g~~d-----g~i~iwd~~~~ 91 (312)
++..++.|+.+ ..+.+||..+.
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~ 111 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKN 111 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCC
Confidence 45566666643 35778887664
No 484
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=65.94 E-value=20 Score=19.47 Aligned_cols=36 Identities=22% Similarity=0.180 Sum_probs=23.4
Q ss_pred EEEEEeCCCeEEEEeCCCCeEEEEecccccCeEEEEE
Q 047355 203 YLITGSDDFTVKVWDYETKTCVQILEGHTNNVTAVCF 239 (312)
Q Consensus 203 ~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~i~~l~~ 239 (312)
.+++.-.++.|.++|..+++.+..+.. ...-..++|
T Consensus 6 lyv~~~~~~~v~~id~~~~~~~~~i~v-g~~P~~i~~ 41 (42)
T TIGR02276 6 LYVTNSGSNTVSVIDTATNKVIATIPV-GGYPFGVAV 41 (42)
T ss_pred EEEEeCCCCEEEEEECCCCeEEEEEEC-CCCCceEEe
Confidence 344455688999999988887776664 233344444
No 485
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=65.41 E-value=24 Score=34.46 Aligned_cols=58 Identities=21% Similarity=0.175 Sum_probs=40.8
Q ss_pred CcEEEEeCCCcceeeecccCccceEEEEEecCCCeEEE-EecCC-----eEEEEeccCCCCccc
Q 047355 253 GTILIWNATTFRLQNTLSSGLERVWSIGYKKGSNQVAF-GCDNG-----TLIVKIGNSSGCDSV 310 (312)
Q Consensus 253 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~~g-----~i~v~~~~~~~~~~~ 310 (312)
+.|.+-|.........--.+...+.+.+|||||+.||. .+-.+ .|+|+-.+.+++..+
T Consensus 329 ~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~v 392 (912)
T TIGR02171 329 GNLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLV 392 (912)
T ss_pred CeEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCce
Confidence 47888887654443321345678899999999999998 44343 488888888777643
No 486
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=64.13 E-value=51 Score=27.13 Aligned_cols=56 Identities=21% Similarity=0.171 Sum_probs=0.0
Q ss_pred CeEEEEecCCeEEEEeccCCceeeeEEecCCceeEEEEe---eCCcEEEEecCCCeEEE
Q 047355 30 PWVLASLYSGTVCIWNYHSQTTEKSVKVTDSPVRTAKFV---AREHWIVCGSDDKFIRV 85 (312)
Q Consensus 30 ~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~l~~g~~dg~i~i 85 (312)
..|+.|.++|.|.|.|-+.......+.....|+.-.+.- .-+-.|+.++.||.|++
T Consensus 196 scLViGTE~~~i~iLd~~af~il~~~~lpsvPv~i~~~G~~devdyRI~Va~Rdg~iy~ 254 (257)
T PF14779_consen 196 SCLVIGTESGEIYILDPQAFTILKQVQLPSVPVFISVSGQYDEVDYRIVVACRDGKIYT 254 (257)
T ss_pred ceEEEEecCCeEEEECchhheeEEEEecCCCceEEEEEeeeeccceEEEEEeCCCEEEE
No 487
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=63.89 E-value=28 Score=28.43 Aligned_cols=82 Identities=20% Similarity=0.210 Sum_probs=45.8
Q ss_pred EEEEeCCCCeEEEEecccccCeEEEEEeCCCcEEEEEeC-C--CcEEEEeCCC----cc---eeeecccCccceEEEEEe
Q 047355 213 VKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITASE-D--GTILIWNATT----FR---LQNTLSSGLERVWSIGYK 282 (312)
Q Consensus 213 i~vwd~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~s~-d--g~v~iwd~~~----~~---~~~~~~~~~~~v~~~~~~ 282 (312)
-.+||..+++....-........+=.+.+||++|.+|+. | ..+|+++..+ .. ....+... .---+..--
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~-RWYpT~~~L 126 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSG-RWYPTATTL 126 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCC-CccccceEC
Confidence 357888877654322222222233466789999999886 2 3588887543 11 11111111 112233345
Q ss_pred cCCCeEEEEecCC
Q 047355 283 KGSNQVAFGCDNG 295 (312)
Q Consensus 283 ~~~~~l~~~~~~g 295 (312)
|||+.|+.|+...
T Consensus 127 ~DG~vlIvGG~~~ 139 (243)
T PF07250_consen 127 PDGRVLIVGGSNN 139 (243)
T ss_pred CCCCEEEEeCcCC
Confidence 7899999888763
No 488
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=63.84 E-value=1.2e+02 Score=27.84 Aligned_cols=282 Identities=12% Similarity=0.162 Sum_probs=127.8
Q ss_pred cCcEEEEEEcCCCCeEEEEecCCeEEEEeccCC-----ceeeeEE---ecCCceeEEEEee-----CCcEEEE--ecCC-
Q 047355 17 SDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQ-----TTEKSVK---VTDSPVRTAKFVA-----REHWIVC--GSDD- 80 (312)
Q Consensus 17 ~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~-----~~~~~~~---~~~~~v~~~~~~~-----~~~~l~~--g~~d- 80 (312)
...-..++.+|.++.++.++..|.+.++.+... .....+. .....|..++|.. +...++. ....
T Consensus 43 ~~~G~~l~vDP~~R~i~v~a~e~~~~v~~l~~~~~~~~~~~~~~~~pi~s~~~i~~~~FL~~~~~~~~p~la~L~~~~~~ 122 (504)
T PF10433_consen 43 SQPGQYLAVDPSGRCIAVSAYEGNFLVYPLNRSLDSDIAFSPHINSPIKSEGNILDMCFLHPSVGYDNPTLAILYVDSQR 122 (504)
T ss_dssp -TT--EEEE-TTSSEEEEEEBTTEEEEEE-SS----T-TT---EEEE--S-SEEEEEEEES---S-SS-EEEEEEEETT-
T ss_pred hcCCcEEEECCcCCEEEEEecCCeEEEEEecccccccccccccccccccCCceEEEEEEEecccCCCCceEEEEEEEecc
Confidence 345677899999999999999999999988761 1111111 1255678888885 1222221 2222
Q ss_pred -CeEEEEEccCceee-eee----------cccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCC--ceeeeEecC----
Q 047355 81 -KFIRVFDYNTMASV-KEF----------EAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKN--WECTQTFEG---- 142 (312)
Q Consensus 81 -g~i~iwd~~~~~~~-~~~----------~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~--~~~~~~~~~---- 142 (312)
..+..|.++....+ +.. ..+..+..-+........++.++. +.+.+-+.... .........
T Consensus 123 ~~~~~~y~w~~~~~l~~~~~~~~~~~~l~~~~~~p~~LIPlp~~~ggllV~~~-~~i~y~~~~~~~~~~~~~~~~~~~~~ 201 (504)
T PF10433_consen 123 RTHLVTYEWSLDDGLNHVISKSTLPIRLPNEDELPSFLIPLPNPPGGLLVGGE-NIIIYKNHLIGSGDYSFLSIPSPPSS 201 (504)
T ss_dssp EEEEEEEE--------EETTTTEEEE--EEEE-TTEEEEEE-TTT-SEEEEES-SEEEEEE------TTEEEEE--H-HH
T ss_pred cceeEEEeeecccccceeeeeccccccccccCCCccEEEEcCCCCcEEEEECC-EEEEEecccccccccccccccCCccC
Confidence 23444442221111 111 011222222333222334554543 33333221110 001111111
Q ss_pred CccceEEEEe------CCCCCCEEEEEeCCCeEEEEEcCCCcc--eeeeccc-ccceeEEEEEEcCCceEEEEEeC--CC
Q 047355 143 HSHYVMQSAF------NPKDLNTFASASLDGTIQIWNMDSSAA--KFTLDAH-EKGINCIDYFITSDKVYLITGSD--DF 211 (312)
Q Consensus 143 ~~~~v~~~~~------~~~~~~~~~s~s~dg~v~iwd~~~~~~--~~~~~~~-~~~v~~~~~~~~~~~~~l~sg~~--dg 211 (312)
....+..... ...+...++-+.++|.+....+..... ....-+. .....++.+. ...+.+++.|+. |+
T Consensus 202 ~~~~~~~~~~p~~~~~~~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l-~~g~d~lf~gs~~gds 280 (504)
T PF10433_consen 202 SSSLWTSWARPERNISYDKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYL-KNGGDYLFVGSEFGDS 280 (504)
T ss_dssp HTS-EEEEEE------SSTTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEE-STT--EEEEEESSS-E
T ss_pred CCceEEEEEeccccceecCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEE-cCCCEEEEEEEecCCc
Confidence 1222333322 234557888899999998887765432 1111111 2233444432 221225666665 44
Q ss_pred eEEEEeCCCCeEEEEecccccCeEEEEEeCC----Cc------EEEEEe---CCCcEEEEeCCCc-c--ee--eecccCc
Q 047355 212 TVKVWDYETKTCVQILEGHTNNVTAVCFHPE----LR------IIITAS---EDGTILIWNATTF-R--LQ--NTLSSGL 273 (312)
Q Consensus 212 ~i~vwd~~~~~~~~~~~~h~~~i~~l~~~~~----~~------~l~s~s---~dg~v~iwd~~~~-~--~~--~~~~~~~ 273 (312)
.+.-|.....+.+..+. .-++|..+++-+. .. .|++++ .+|.+++....-. + .. ..+.+ .
T Consensus 281 ~l~~~~~~~l~~~~~~~-N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~-v 358 (504)
T PF10433_consen 281 QLLQISLSNLEVLDSLP-NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPG-V 358 (504)
T ss_dssp EEEEEESESEEEEEEE-----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEEST-E
T ss_pred EEEEEeCCCcEEEEecc-CcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCC-c
Confidence 55556544445555555 3457888888531 11 455554 4678988853211 1 11 11222 4
Q ss_pred cceEEEEEec-CCCeEEEEecCCeEEEEec
Q 047355 274 ERVWSIGYKK-GSNQVAFGCDNGTLIVKIG 302 (312)
Q Consensus 274 ~~v~~~~~~~-~~~~l~~~~~~g~i~v~~~ 302 (312)
.++|.+.... +..+|+.+..+.+..+++.
T Consensus 359 ~~iW~l~~~~~~~~~lv~S~~~~T~vl~~~ 388 (504)
T PF10433_consen 359 TGIWTLKLSSSDHSYLVLSFPNETRVLQIS 388 (504)
T ss_dssp EEEEEE-SSSSSBSEEEEEESSEEEEEEES
T ss_pred eEEEEeeecCCCceEEEEEcCCceEEEEEe
Confidence 6788887543 3678888888889888886
No 489
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=63.28 E-value=98 Score=26.62 Aligned_cols=12 Identities=8% Similarity=-0.128 Sum_probs=7.6
Q ss_pred cCCCEEEEEeCC
Q 047355 111 PTFPFVLTASDD 122 (312)
Q Consensus 111 ~~~~~l~t~s~d 122 (312)
-++++.+.|+.+
T Consensus 117 ~~g~IYviGG~~ 128 (346)
T TIGR03547 117 HNGQAYFTGGVN 128 (346)
T ss_pred eCCEEEEEcCcC
Confidence 356666777754
No 490
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=61.06 E-value=2e+02 Score=29.46 Aligned_cols=141 Identities=14% Similarity=0.272 Sum_probs=75.4
Q ss_pred cEEEEec-----CC----CeEEEEEccC-----ce-----eeeee--cccccceeEEEEecCCCEEEEEeCCCcEEEEeC
Q 047355 72 HWIVCGS-----DD----KFIRVFDYNT-----MA-----SVKEF--EAHEDYIRSLAVHPTFPFVLTASDDKLIKLWDW 130 (312)
Q Consensus 72 ~~l~~g~-----~d----g~i~iwd~~~-----~~-----~~~~~--~~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~ 130 (312)
.+|+.|. +| |.+.++|+-. ++ .++++ +.-+++|..++= -.| +++++. ...|.+|++
T Consensus 1047 ~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavce-V~G-~l~~~~-GqKI~v~~l 1123 (1366)
T KOG1896|consen 1047 PYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCE-VRG-HLLSSQ-GQKIIVRKL 1123 (1366)
T ss_pred ceEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEE-ecc-EEEEcc-CcEEEEEEe
Confidence 4666664 23 8899998632 21 22322 334566766652 234 455443 357999998
Q ss_pred CCCceee-eEecCCccceEEEEeCCCCCCEEEEEeCCCeEEEEEcCCCcceeeecc---cccceeEEEEEEcCCceEEEE
Q 047355 131 EKNWECT-QTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFTLDA---HEKGINCIDYFITSDKVYLIT 206 (312)
Q Consensus 131 ~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~l~s 206 (312)
....... ..|-.-.-++.++.. -.++++.|-.-..|.+.-+........+-. ....+.++.|......-+++.
T Consensus 1124 ~r~~~ligVaFiD~~~yv~s~~~---vknlIl~gDV~ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flv 1200 (1366)
T KOG1896|consen 1124 DRDSELIGVAFIDLPLYVHSMKV---VKNLILAGDVMKSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLV 1200 (1366)
T ss_pred ccCCcceeeEEeccceeEEehhh---hhhheehhhhhhceEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEEE
Confidence 4432221 122211222222211 124555555555555555544433333322 223467778877777788999
Q ss_pred EeCCCeEEEEeC
Q 047355 207 GSDDFTVKVWDY 218 (312)
Q Consensus 207 g~~dg~i~vwd~ 218 (312)
...+++|++|-.
T Consensus 1201 sDa~rNi~vy~Y 1212 (1366)
T KOG1896|consen 1201 SDADRNIHVYMY 1212 (1366)
T ss_pred EcCCCcEEEEEe
Confidence 999999998853
No 491
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.94 E-value=1.6e+02 Score=28.34 Aligned_cols=174 Identities=12% Similarity=0.102 Sum_probs=85.8
Q ss_pred CcEEEEeCCCCceeeeEecCCccceEEEEeCCCCCCEEEEEeCCCeEEEEEcCCCcceee-e--cccccceeEEEEEEcC
Q 047355 123 KLIKLWDWEKNWECTQTFEGHSHYVMQSAFNPKDLNTFASASLDGTIQIWNMDSSAAKFT-L--DAHEKGINCIDYFITS 199 (312)
Q Consensus 123 ~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~-~--~~~~~~v~~~~~~~~~ 199 (312)
-.|+||+... ............+..+.|+. ...|+....+|++++|++........ . +.-...|....+ ..
T Consensus 64 ~~I~If~~sG--~lL~~~~w~~~~lI~mgWs~--~eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~--f~ 137 (829)
T KOG2280|consen 64 PYIRIFNISG--QLLGRILWKHGELIGMGWSD--DEELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRF--FH 137 (829)
T ss_pred eeEEEEeccc--cchHHHHhcCCCeeeecccC--CceEEEEeccceEEEeecchhhhcccccccccccCceeEEEE--ec
Confidence 3466666543 22222222223566777874 46788889999999999865432221 1 111122332222 23
Q ss_pred CceEEEEEeCCCeEEEE-eCCCCeEEEEecc---cccCeEEEEEeCCCc---EEEEEe-CCCcEEEEeCCCc-ceeeecc
Q 047355 200 DKVYLITGSDDFTVKVW-DYETKTCVQILEG---HTNNVTAVCFHPELR---IIITAS-EDGTILIWNATTF-RLQNTLS 270 (312)
Q Consensus 200 ~~~~l~sg~~dg~i~vw-d~~~~~~~~~~~~---h~~~i~~l~~~~~~~---~l~s~s-~dg~v~iwd~~~~-~~~~~~~ 270 (312)
+|..+.+. +|.+.+- +.+.. .+..++. ...+-.|-...++++ .++-.. ..+ ..+...... ...+.+.
T Consensus 138 ~GVavlt~--~g~v~~i~~~~~~-~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~ 213 (829)
T KOG2280|consen 138 NGVAVLTV--SGQVILINGVEEP-KLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALS 213 (829)
T ss_pred CceEEEec--CCcEEEEcCCCcc-hhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccC
Confidence 56544444 4555443 33221 2222221 111112222222211 111111 111 122222221 2234444
Q ss_pred cCccceEEEEEecCCCeEEEEecCCeEEEEeccCCC
Q 047355 271 SGLERVWSIGYKKGSNQVAFGCDNGTLIVKIGNSSG 306 (312)
Q Consensus 271 ~~~~~v~~~~~~~~~~~l~~~~~~g~i~v~~~~~~~ 306 (312)
.....+..+..||+..+|+.-...|.+.+.-.+.+.
T Consensus 214 ~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~ 249 (829)
T KOG2280|consen 214 WPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQ 249 (829)
T ss_pred CCCceEEEEEEcCCcceEEEEecCCcEEEEecchhh
Confidence 456788899999999999999999999887666544
No 492
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=60.88 E-value=17 Score=19.74 Aligned_cols=21 Identities=19% Similarity=0.226 Sum_probs=16.0
Q ss_pred CCcEEEEecCCCeEEEEEccC
Q 047355 70 REHWIVCGSDDKFIRVFDYNT 90 (312)
Q Consensus 70 ~~~~l~~g~~dg~i~iwd~~~ 90 (312)
.+..++.++.||.+..+|.++
T Consensus 20 ~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 20 AGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp CTSEEEEE-TTSEEEEEETT-
T ss_pred ECCEEEEEcCCCEEEEEeCCC
Confidence 466899999999999998753
No 493
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=59.87 E-value=29 Score=33.42 Aligned_cols=131 Identities=22% Similarity=0.210 Sum_probs=77.4
Q ss_pred CEEEEEeCCCeEEEEEcCCCcceee----ecccccceeEEEEEEcCCceEEEEEeCCCeEEE--------EeCCCCeEEE
Q 047355 158 NTFASASLDGTIQIWNMDSSAAKFT----LDAHEKGINCIDYFITSDKVYLITGSDDFTVKV--------WDYETKTCVQ 225 (312)
Q Consensus 158 ~~~~s~s~dg~v~iwd~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~~l~sg~~dg~i~v--------wd~~~~~~~~ 225 (312)
.....++.++.+-++.-........ .......+.++.+. + .-+..|..||++-. ||.+ +-.
T Consensus 548 PTic~gtq~ssisissss~~s~ke~~~~~~spe~~~v~~l~~s--s--~Slgagl~dgt~a~y~rap~gSwd~e---p~~ 620 (925)
T KOG3522|consen 548 PTICLGTQTSSISISSSSLDSIKEVTSEPPSPEHESVKLLLFS--S--GSLGAGLIDGTLAVYGRAPSGSWDGE---PNI 620 (925)
T ss_pred CcccccCccceeEEeeccCCcccceeccCCCCchhhhhhhhcc--c--cccccCccCCccccccCCCCCCCCCC---Ccc
Confidence 3577888899999987652211111 11112233333321 1 12334445555444 4443 222
Q ss_pred EecccccCeEEEEEeCCCcEEEEEeCCCcEEEEeCCCcceeeecccCcc---ceEEEEEecCCCeEEEEecCCeEE
Q 047355 226 ILEGHTNNVTAVCFHPELRIIITASEDGTILIWNATTFRLQNTLSSGLE---RVWSIGYKKGSNQVAFGCDNGTLI 298 (312)
Q Consensus 226 ~~~~h~~~i~~l~~~~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~~g~i~ 298 (312)
.+..-..+|++.+|..| +.-++.+|.|.++...+......+..|.+ .|.++.+.-++-.++.++.+-..+
T Consensus 621 ~~~~g~lPvrsla~~ed---~~was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~~gVwvafasG~~~rl 693 (925)
T KOG3522|consen 621 SIPTGSLPVRSLAFQED---FVWASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLDNGVWVAFASGDEERL 693 (925)
T ss_pred ccccCCccccchhhhhc---eeeeecCCceEEEechhccccchhHHHHhhcceEEEEEeeCCceEEEEcCCCEEEE
Confidence 22233557888888776 56677899999999998877777666654 578888777777777666554443
No 494
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=55.42 E-value=52 Score=22.07 Aligned_cols=42 Identities=21% Similarity=0.305 Sum_probs=27.9
Q ss_pred EeCCCeEEEEeCCCCeEEEEecccccCeEEEEEeCCCcEEEEE
Q 047355 207 GSDDFTVKVWDYETKTCVQILEGHTNNVTAVCFHPELRIIITA 249 (312)
Q Consensus 207 g~~dg~i~vwd~~~~~~~~~~~~h~~~i~~l~~~~~~~~l~s~ 249 (312)
+..+|.+.-||..+++....+.+-. --+.|++++|+..++.+
T Consensus 33 ~~~~GRll~ydp~t~~~~vl~~~L~-fpNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKETTVLLDGLY-FPNGVALSPDESFVLVA 74 (89)
T ss_dssp T---EEEEEEETTTTEEEEEEEEES-SEEEEEE-TTSSEEEEE
T ss_pred CCCCcCEEEEECCCCeEEEehhCCC-ccCeEEEcCCCCEEEEE
Confidence 3456788899999887665555433 46899999999865544
No 495
>KOG2103 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.04 E-value=85 Score=30.33 Aligned_cols=90 Identities=11% Similarity=0.138 Sum_probs=57.9
Q ss_pred hhhhhhhhhcccCcEEEEEEcCCCCeEEEEecCCeEEEEeccCCceeeeEEe-cCCceeEEEEeeCCcEEEEecCC-CeE
Q 047355 6 ELQIEKEFIQKSDRVKSVDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVKV-TDSPVRTAKFVAREHWIVCGSDD-KFI 83 (312)
Q Consensus 6 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~g~~d-g~i 83 (312)
+++.+.+|.+ ...+..+.+++..++|++..+.|.+--.++.+++..-.... .......+.+.. +-+.| ..+
T Consensus 25 kfdwr~~~vG-~~k~~~~~~~t~~~rlivsT~~~vlAsL~~~tGei~WRqvl~~~~~~~~~~~~~------~iS~dg~~l 97 (910)
T KOG2103|consen 25 KFDWRQQLVG-VKKVNFLVYDTKSKRLIVSTEKGVLASLNLRTGEIIWRQVLEPKTSGLGVPLTN------TISVDGRYL 97 (910)
T ss_pred hcchhhhccc-ceeEEEEeecCCCceEEEEeccchhheecccCCcEEEEEeccCCCcccCcceeE------EEccCCcEE
Confidence 3455667777 66899999999999999999999988888877765432221 111111222221 22333 478
Q ss_pred EEEEccCceeeeeeccccc
Q 047355 84 RVFDYNTMASVKEFEAHED 102 (312)
Q Consensus 84 ~iwd~~~~~~~~~~~~h~~ 102 (312)
+.|+...+....+++-|.+
T Consensus 98 r~wn~~~g~l~~~i~l~~g 116 (910)
T KOG2103|consen 98 RSWNTNNGILDWEIELADG 116 (910)
T ss_pred EeecCCCceeeeecccccc
Confidence 9999888766666555544
No 496
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=54.43 E-value=1.2e+02 Score=29.85 Aligned_cols=75 Identities=8% Similarity=-0.089 Sum_probs=44.7
Q ss_pred CCeEEEEEccCceeeeeecccccceeEEEEecCCCEEEE-EeCCC-----cEEEEeCCCCceeeeEecCCccceEEEEeC
Q 047355 80 DKFIRVFDYNTMASVKEFEAHEDYIRSLAVHPTFPFVLT-ASDDK-----LIKLWDWEKNWECTQTFEGHSHYVMQSAFN 153 (312)
Q Consensus 80 dg~i~iwd~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~t-~s~d~-----~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 153 (312)
.+.|.+-|.+.......--.+..+|.+=+|+|+|+.|+. .+.++ .|.+-|+.+...-..++.-....|.+....
T Consensus 328 ~~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~aaiprwrv~ 407 (912)
T TIGR02171 328 TGNLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVENAAIPRWRVL 407 (912)
T ss_pred CCeEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeecccccccceEec
Confidence 357778787765443321456778888999999999987 55444 366667665433333333333444444444
Q ss_pred C
Q 047355 154 P 154 (312)
Q Consensus 154 ~ 154 (312)
.
T Consensus 408 e 408 (912)
T TIGR02171 408 E 408 (912)
T ss_pred C
Confidence 3
No 497
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.71 E-value=2.4e+02 Score=28.05 Aligned_cols=70 Identities=11% Similarity=0.180 Sum_probs=41.0
Q ss_pred EEEcCCCCeEEEEecCCeEEEEeccCCceeeeEE-----------ecCCceeEEEEeeCCcEEEEecCCCeEEEEEccCc
Q 047355 23 VDFHPTQPWVLASLYSGTVCIWNYHSQTTEKSVK-----------VTDSPVRTAKFVAREHWIVCGSDDKFIRVFDYNTM 91 (312)
Q Consensus 23 ~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~-----------~~~~~v~~~~~~~~~~~l~~g~~dg~i~iwd~~~~ 91 (312)
.++...|+.|..|+.||.+.+|.+.......... ....+|..+...+.-..+++ -.|+.|.++++.+.
T Consensus 20 ~~va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~~kk~i~~l~~~~~~~~ll~-l~dsqi~~~~l~~~ 98 (877)
T KOG2063|consen 20 LCVAAYGNHLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKEFSKKPINKLLVCASLELLLI-LSDSQIAVHKLPEL 98 (877)
T ss_pred hHHHHhCCEEEEEcCCCcEEEEeccccccccchhhhcchhHHhhhhccchhHHHhhcchhcchhe-ecCCcceeeecCcc
Confidence 4556678999999999999999886542211100 11234444444443333333 34567888877665
Q ss_pred ee
Q 047355 92 AS 93 (312)
Q Consensus 92 ~~ 93 (312)
+.
T Consensus 99 ~~ 100 (877)
T KOG2063|consen 99 EP 100 (877)
T ss_pred cc
Confidence 44
No 498
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=51.27 E-value=2.8e+02 Score=28.08 Aligned_cols=151 Identities=17% Similarity=0.270 Sum_probs=75.7
Q ss_pred cEEEEEEcCCC--CeEEEEec-----------CCeEEEEecc-CCceeeeEEecCCceeEEEEeeCCcEEEEecCCCeEE
Q 047355 19 RVKSVDFHPTQ--PWVLASLY-----------SGTVCIWNYH-SQTTEKSVKVTDSPVRTAKFVAREHWIVCGSDDKFIR 84 (312)
Q Consensus 19 ~i~~~~~~~~~--~~l~~~~~-----------dg~v~iw~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~ 84 (312)
.|.+..|+... .++++|.. +|.++.|++. .++.+..+....-+-.-.+..+-..++++|- ...++
T Consensus 879 ~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~~~~~v~Ai~~f~~~~Lagv-G~~l~ 957 (1205)
T KOG1898|consen 879 SVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTEIPGPVGAICPFQGRVLAGV-GRFLR 957 (1205)
T ss_pred heeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccCCCccceEEeccCCEEEEec-ccEEE
Confidence 56777776533 34555542 3446666653 2332222322222222334455555666654 46899
Q ss_pred EEEccCceeeeeec--ccccceeEEEEecCCCEEEEEeCCCcEEEEeCCCCceeeeEecCCc--cceEEEEeCCCCCCEE
Q 047355 85 VFDYNTMASVKEFE--AHEDYIRSLAVHPTFPFVLTASDDKLIKLWDWEKNWECTQTFEGHS--HYVMQSAFNPKDLNTF 160 (312)
Q Consensus 85 iwd~~~~~~~~~~~--~h~~~i~~~~~~~~~~~l~t~s~d~~v~iwd~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~ 160 (312)
+||+...+.+.+.+ .-...|..+.+. +..++.|..--.+.++-.+........+.... ..+..+.+- +...+
T Consensus 958 ~YdlG~K~lLRk~e~k~~p~~Is~iqt~--~~RI~VgD~qeSV~~~~y~~~~n~l~~fadD~~pR~Vt~~~~l--D~~tv 1033 (1205)
T KOG1898|consen 958 LYDLGKKKLLRKCELKFIPNRISSIQTY--GARIVVGDIQESVHFVRYRREDNQLIVFADDPVPRHVTALELL--DYDTV 1033 (1205)
T ss_pred EeeCChHHHHhhhhhccCceEEEEEeec--ceEEEEeeccceEEEEEEecCCCeEEEEeCCCccceeeEEEEe--cCCce
Confidence 99998766554432 223456666543 44577777666666665544333333332221 223333322 33456
Q ss_pred EEEeCCCeEEEEEc
Q 047355 161 ASASLDGTIQIWNM 174 (312)
Q Consensus 161 ~s~s~dg~v~iwd~ 174 (312)
+.+-.-|.+.+.-+
T Consensus 1034 agaDrfGNi~~vR~ 1047 (1205)
T KOG1898|consen 1034 AGADRFGNIAVVRI 1047 (1205)
T ss_pred eeccccCcEEEEEC
Confidence 65555555544433
No 499
>COG5308 NUP170 Nuclear pore complex subunit [Intracellular trafficking and secretion]
Probab=47.84 E-value=1.7e+02 Score=29.00 Aligned_cols=27 Identities=19% Similarity=0.254 Sum_probs=21.8
Q ss_pred cCeEEEEEeCCCcEEEEEeCCCcEEEEeC
Q 047355 232 NNVTAVCFHPELRIIITASEDGTILIWNA 260 (312)
Q Consensus 232 ~~i~~l~~~~~~~~l~s~s~dg~v~iwd~ 260 (312)
-.|.|+.-+.+|+.+++|-.| +.+|.+
T Consensus 182 inV~civs~e~GrIFf~g~~d--~nvyEl 208 (1263)
T COG5308 182 INVRCIVSEEDGRIFFGGEND--PNVYEL 208 (1263)
T ss_pred ceeEEEEeccCCcEEEecCCC--CCeEEE
Confidence 468888878889999999888 777865
No 500
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=47.41 E-value=3.2e+02 Score=27.69 Aligned_cols=39 Identities=10% Similarity=0.102 Sum_probs=29.2
Q ss_pred cCcEEEEEEcCCC------CeEEEEecCCeEEEEeccCCceeeeE
Q 047355 17 SDRVKSVDFHPTQ------PWVLASLYSGTVCIWNYHSQTTEKSV 55 (312)
Q Consensus 17 ~~~i~~~~~~~~~------~~l~~~~~dg~v~iw~~~~~~~~~~~ 55 (312)
+..|.++++.++. ++++.+..|+.+++..+.....+..+
T Consensus 582 ~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~d~l~~l 626 (1205)
T KOG1898|consen 582 STDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPSDCLQPL 626 (1205)
T ss_pred ceeehhhccCCCCcchhhcceeeeeccccceeEEEecCcceEEEc
Confidence 4578888888765 56888999999999988765555443
Done!