BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 047356
         (241 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3ICJ|A Chain A, Crystal Structure Of An Uncharacterized Metal-Dependent
           Hydrolase From Pyrococcus Furiosus
          Length = 534

 Score = 32.7 bits (73), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 7/81 (8%)

Query: 155 QNVTKLDVALTGQTQYGSTLMKAIQEQQQTGRIPLDL-------KVDAPVAIKLGKLKLR 207
           +++  L V   G    G   +KA+ E ++ GR+ +++        +D    + LGK + R
Sbjct: 229 EHLLSLGVHSVGFMSVGEKALKALFELEREGRLKMNVFAYLSPELLDKLEELNLGKFEGR 288

Query: 208 KVKILGQCLLVVDSLSANNKI 228
           +++I G  L V  SL A   +
Sbjct: 289 RLRIWGVXLFVDGSLGARTAL 309


>pdb|3AHM|A Chain A, Pz Peptidase A
 pdb|3AHM|B Chain B, Pz Peptidase A
 pdb|3AHN|A Chain A, Pz Peptidase A With Inhibitor 1
 pdb|3AHN|B Chain B, Pz Peptidase A With Inhibitor 1
 pdb|3AHO|A Chain A, Pz Peptidase A With Inhibitor 2
 pdb|3AHO|B Chain B, Pz Peptidase A With Inhibitor 2
          Length = 564

 Score = 27.7 bits (60), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 13/55 (23%), Positives = 29/55 (52%)

Query: 153 GHQNVTKLDVALTGQTQYGSTLMKAIQEQQQTGRIPLDLKVDAPVAIKLGKLKLR 207
           G +N  +L  A  G+T Y + ++   ++Q +   +P+ +K+      ++G  KL+
Sbjct: 211 GFKNFVELGYARLGRTDYNAEMVAKFRKQVEKHIVPIAVKLRERQRERIGVEKLK 265


>pdb|1I49|A Chain A, Crystal Structure Analysis Of Arfaptin
 pdb|1I49|B Chain B, Crystal Structure Analysis Of Arfaptin
 pdb|1I4D|A Chain A, Crystal Structure Analysis Of Rac1-Gdp Complexed With
           Arfaptin (P21)
 pdb|1I4D|B Chain B, Crystal Structure Analysis Of Rac1-Gdp Complexed With
           Arfaptin (P21)
 pdb|1I4L|A Chain A, Crystal Structure Analysis Of Rac1-Gdp In Complex With
           Arfaptin (P41)
 pdb|1I4L|B Chain B, Crystal Structure Analysis Of Rac1-Gdp In Complex With
           Arfaptin (P41)
 pdb|1I4T|A Chain A, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
           Arfaptin
 pdb|1I4T|B Chain B, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
           Arfaptin
          Length = 224

 Score = 27.3 bits (59), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 4/54 (7%)

Query: 192 KVDAPVAIKLGKLKLRKVKILGQCLLV----VDSLSANNKISIKASNCSFNLKL 241
           K+   VAIKL  L+  K+K++ + LL+    V +  A N+  ++ +   FN+KL
Sbjct: 157 KLRGDVAIKLKFLEENKIKVMHKQLLLFHNAVSAYFAGNQKQLEQTLQQFNIKL 210


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.130    0.381 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,046,020
Number of Sequences: 62578
Number of extensions: 143889
Number of successful extensions: 317
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 317
Number of HSP's gapped (non-prelim): 4
length of query: 241
length of database: 14,973,337
effective HSP length: 96
effective length of query: 145
effective length of database: 8,965,849
effective search space: 1300048105
effective search space used: 1300048105
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)