Query 047356
Match_columns 241
No_of_seqs 167 out of 842
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 10:19:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047356.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047356hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03160 uncharacterized prote 100.0 9.3E-40 2E-44 279.0 27.3 214 1-241 1-219 (219)
2 PF03168 LEA_2: Late embryogen 99.5 6.5E-13 1.4E-17 99.0 9.9 98 113-216 1-100 (101)
3 smart00769 WHy Water Stress an 98.5 3.3E-06 7.2E-11 63.4 11.6 88 100-193 7-96 (100)
4 PF07092 DUF1356: Protein of u 97.9 0.00048 1E-08 59.3 13.7 83 83-167 98-182 (238)
5 PF12751 Vac7: Vacuolar segreg 97.8 0.00015 3.3E-09 66.2 9.6 87 47-142 294-380 (387)
6 COG5608 LEA14-like dessication 97.2 0.041 8.9E-07 44.3 15.7 116 84-212 31-148 (161)
7 PLN03160 uncharacterized prote 96.0 0.07 1.5E-06 45.7 9.7 103 46-159 33-147 (219)
8 TIGR03602 streptolysinS bacter 91.0 0.018 3.9E-07 37.2 -2.6 12 50-61 25-36 (56)
9 TIGR02588 conserved hypothetic 90.8 0.67 1.5E-05 36.0 5.4 51 65-122 11-63 (122)
10 COG1580 FliL Flagellar basal b 82.9 5.8 0.00013 32.4 6.9 26 56-81 17-42 (159)
11 PF06072 Herpes_US9: Alphaherp 75.0 1.2 2.7E-05 30.0 0.5 6 55-60 35-40 (60)
12 KOG3950 Gamma/delta sarcoglyca 73.5 7.6 0.00017 33.8 5.1 23 105-127 105-127 (292)
13 PRK07021 fliL flagellar basal 72.5 26 0.00055 28.4 7.9 13 126-139 79-91 (162)
14 PF14155 DUF4307: Domain of un 71.9 10 0.00022 29.0 5.0 62 92-164 35-98 (112)
15 PF09307 MHC2-interact: CLIP, 69.2 1.5 3.4E-05 33.7 0.0 34 48-82 24-57 (114)
16 PRK13183 psbN photosystem II r 68.2 6.9 0.00015 25.1 2.8 23 61-83 10-32 (46)
17 PF10177 DUF2371: Uncharacteri 67.6 12 0.00026 29.9 4.7 30 53-84 35-64 (141)
18 PF12273 RCR: Chitin synthesis 65.1 3.7 8E-05 32.0 1.4 9 58-66 2-10 (130)
19 CHL00020 psbN photosystem II p 64.7 7.7 0.00017 24.5 2.5 23 61-83 7-29 (43)
20 PF02468 PsbN: Photosystem II 63.8 6.4 0.00014 24.9 2.0 23 61-83 7-29 (43)
21 PF09624 DUF2393: Protein of u 63.0 31 0.00067 27.2 6.5 63 72-144 32-96 (149)
22 PF12575 DUF3753: Protein of u 62.3 11 0.00024 26.6 3.2 23 56-78 46-68 (72)
23 PRK10893 lipopolysaccharide ex 59.9 93 0.002 26.0 9.0 29 82-112 37-65 (192)
24 PHA02650 hypothetical protein; 59.9 8.3 0.00018 27.6 2.2 25 55-79 46-70 (81)
25 PHA03054 IMV membrane protein; 59.7 8.6 0.00019 26.9 2.2 25 55-79 45-69 (72)
26 PHA02819 hypothetical protein; 59.6 8.8 0.00019 26.8 2.3 25 55-79 43-67 (71)
27 KOG4331 Polytopic membrane pro 56.6 8 0.00017 39.2 2.4 22 61-82 155-176 (865)
28 COG4698 Uncharacterized protei 56.1 10 0.00022 31.5 2.5 29 74-102 27-58 (197)
29 PHA02844 putative transmembran 55.9 11 0.00024 26.6 2.3 24 56-79 46-69 (75)
30 PF11906 DUF3426: Protein of u 55.8 58 0.0013 25.5 6.9 58 88-147 48-106 (149)
31 PHA02692 hypothetical protein; 55.7 13 0.00028 26.0 2.6 23 56-78 43-66 (70)
32 COG5009 MrcA Membrane carboxyp 55.2 7.5 0.00016 39.1 1.9 36 54-89 3-38 (797)
33 PRK06975 bifunctional uroporph 55.1 27 0.0006 34.8 5.9 9 18-26 288-296 (656)
34 PRK07718 fliL flagellar basal 54.6 19 0.00042 28.5 3.9 7 133-139 69-75 (142)
35 PF14221 DUF4330: Domain of un 54.6 1.2E+02 0.0026 24.8 10.2 17 66-82 22-38 (168)
36 PRK01844 hypothetical protein; 54.3 13 0.00028 26.2 2.5 21 58-78 4-24 (72)
37 PRK14762 membrane protein; Pro 53.9 24 0.00051 19.6 2.9 12 54-65 2-13 (27)
38 PHA02975 hypothetical protein; 53.5 17 0.00036 25.3 2.8 26 54-79 40-65 (69)
39 PF09604 Potass_KdpF: F subuni 52.5 8.5 0.00018 21.5 1.1 20 65-84 4-23 (25)
40 PF12505 DUF3712: Protein of u 52.2 1E+02 0.0023 23.5 9.3 67 141-212 2-70 (125)
41 PF09911 DUF2140: Uncharacteri 52.1 21 0.00046 29.8 3.9 25 62-86 7-31 (187)
42 PF05478 Prominin: Prominin; 51.9 7.2 0.00016 39.8 1.3 28 48-75 133-160 (806)
43 PHA03049 IMV membrane protein; 50.6 9.4 0.0002 26.4 1.3 21 62-82 4-24 (68)
44 KOG0810 SNARE protein Syntaxin 50.3 7.3 0.00016 35.0 0.9 11 48-58 268-278 (297)
45 COG3763 Uncharacterized protei 49.9 19 0.00041 25.2 2.7 19 58-76 4-22 (71)
46 COG5353 Uncharacterized protei 49.9 7.6 0.00017 31.3 0.8 31 54-84 4-34 (161)
47 PF09865 DUF2092: Predicted pe 49.8 1.6E+02 0.0034 25.1 9.0 40 103-143 34-74 (214)
48 PF12273 RCR: Chitin synthesis 49.8 15 0.00032 28.6 2.4 10 57-66 4-13 (130)
49 PF11807 DUF3328: Domain of un 48.2 24 0.00053 28.8 3.7 7 47-53 5-11 (217)
50 PRK05529 cell division protein 47.8 40 0.00086 29.4 5.1 51 85-136 58-135 (255)
51 PF05961 Chordopox_A13L: Chord 47.7 11 0.00023 26.2 1.2 22 62-83 4-25 (68)
52 PRK00523 hypothetical protein; 47.4 19 0.00042 25.3 2.5 20 58-77 5-24 (72)
53 PF07423 DUF1510: Protein of u 47.2 12 0.00025 32.2 1.6 15 53-67 13-27 (217)
54 PF14283 DUF4366: Domain of un 47.2 15 0.00032 31.5 2.3 20 69-88 171-190 (218)
55 PF15145 DUF4577: Domain of un 47.1 20 0.00044 27.4 2.7 26 58-83 63-88 (128)
56 PRK06531 yajC preprotein trans 46.5 12 0.00026 28.7 1.5 12 73-84 12-23 (113)
57 PF05478 Prominin: Prominin; 45.1 23 0.0005 36.2 3.6 15 64-78 145-159 (806)
58 cd07912 Tweety_N N-terminal do 43.3 19 0.00041 34.0 2.5 8 55-62 81-88 (418)
59 PF14927 Neurensin: Neurensin 43.0 38 0.00083 27.0 3.8 10 68-77 55-64 (140)
60 TIGR02115 potass_kdpF K+-trans 42.8 7.3 0.00016 21.9 -0.2 19 66-84 4-22 (26)
61 PF05545 FixQ: Cbb3-type cytoc 42.5 18 0.00038 23.2 1.6 17 68-84 17-33 (49)
62 PF06129 Chordopox_G3: Chordop 42.4 40 0.00087 25.7 3.7 30 110-139 51-85 (109)
63 PRK08455 fliL flagellar basal 42.0 44 0.00096 27.7 4.3 14 126-140 103-116 (182)
64 PF10907 DUF2749: Protein of u 41.7 28 0.00062 24.0 2.5 16 69-84 13-28 (66)
65 cd01324 cbb3_Oxidase_CcoQ Cyto 41.7 21 0.00045 23.1 1.8 16 69-84 19-34 (48)
66 PF08113 CoxIIa: Cytochrome c 41.1 18 0.00038 21.6 1.2 14 66-79 11-24 (34)
67 PF01102 Glycophorin_A: Glycop 41.1 14 0.00031 28.7 1.1 24 69-92 77-101 (122)
68 PRK14759 potassium-transportin 41.0 22 0.00047 20.6 1.6 19 66-84 9-27 (29)
69 PRK12785 fliL flagellar basal 40.8 72 0.0016 26.0 5.3 14 126-140 87-100 (166)
70 KOG4298 CAP-binding protein co 40.7 44 0.00096 28.1 4.0 32 55-86 147-179 (245)
71 PF14992 TMCO5: TMCO5 family 38.3 19 0.00041 32.0 1.6 27 47-73 209-235 (280)
72 PF11395 DUF2873: Protein of u 38.1 26 0.00056 21.4 1.7 10 72-81 23-32 (43)
73 PF04478 Mid2: Mid2 like cell 37.7 26 0.00057 28.3 2.2 21 68-88 62-82 (154)
74 PF07787 DUF1625: Protein of u 37.5 38 0.00082 29.3 3.4 15 69-83 234-248 (248)
75 PF00927 Transglut_C: Transglu 37.1 78 0.0017 23.2 4.7 61 103-164 10-74 (107)
76 PF06092 DUF943: Enterobacteri 36.4 25 0.00055 28.6 1.9 15 69-83 14-28 (157)
77 PRK14758 hypothetical protein; 35.8 62 0.0013 18.2 2.8 21 59-79 6-26 (27)
78 KOG3927 Na+/K+ ATPase, beta su 35.2 47 0.001 29.9 3.6 33 69-102 58-93 (300)
79 PRK05696 fliL flagellar basal 34.4 1E+02 0.0022 25.0 5.3 15 125-140 86-100 (170)
80 PF13396 PLDc_N: Phospholipase 33.7 51 0.0011 20.4 2.7 24 56-84 23-46 (46)
81 KOG2621 Prohibitins and stomat 33.7 1.6E+02 0.0036 26.2 6.6 34 87-120 91-131 (288)
82 PF06637 PV-1: PV-1 protein (P 32.9 59 0.0013 30.3 3.9 31 47-78 17-49 (442)
83 COG5074 t-SNARE complex subuni 32.8 30 0.00065 30.1 1.9 9 55-63 251-259 (280)
84 PF02009 Rifin_STEVOR: Rifin/s 32.6 23 0.0005 31.8 1.3 19 64-82 262-280 (299)
85 KOG0809 SNARE protein TLG2/Syn 31.5 46 0.00099 29.9 2.9 6 50-55 281-286 (305)
86 PF06692 MNSV_P7B: Melon necro 30.9 24 0.00051 23.6 0.7 10 79-88 30-39 (61)
87 PF12202 OSR1_C: Oxidative-str 30.8 49 0.0011 20.4 2.1 28 110-138 1-28 (38)
88 COG2991 Uncharacterized protei 30.5 61 0.0013 22.9 2.8 20 58-77 4-23 (77)
89 PF07172 GRP: Glycine rich pro 30.5 41 0.00089 24.9 2.1 9 68-76 11-19 (95)
90 COG1589 FtsQ Cell division sep 29.9 63 0.0014 28.3 3.5 29 69-97 41-69 (269)
91 PF09753 Use1: Membrane fusion 29.8 54 0.0012 28.4 3.1 7 55-61 228-234 (251)
92 PF04573 SPC22: Signal peptida 29.7 2E+02 0.0043 23.8 6.2 10 118-127 79-88 (175)
93 PF12505 DUF3712: Protein of u 29.4 1.2E+02 0.0026 23.1 4.7 24 106-130 98-121 (125)
94 PF03929 PepSY_TM: PepSY-assoc 29.4 82 0.0018 17.7 2.7 12 66-77 15-26 (27)
95 PF09125 COX2-transmemb: Cytoc 28.7 89 0.0019 19.0 2.9 15 58-72 16-30 (38)
96 COG4736 CcoQ Cbb3-type cytochr 28.7 39 0.00085 23.0 1.5 13 72-84 21-33 (60)
97 PF15012 DUF4519: Domain of un 28.2 61 0.0013 21.7 2.4 15 70-84 42-56 (56)
98 PF04790 Sarcoglycan_1: Sarcog 28.1 4.2E+02 0.0091 23.4 9.3 18 105-122 83-100 (264)
99 PHA02902 putative IMV membrane 28.1 27 0.0006 24.0 0.7 19 64-82 7-25 (70)
100 COG1463 Ttg2C ABC-type transpo 28.1 1.2E+02 0.0025 27.8 5.1 39 134-173 58-96 (359)
101 PTZ00201 amastin surface glyco 27.7 67 0.0014 27.0 3.1 9 52-60 101-109 (192)
102 PF11770 GAPT: GRB2-binding ad 27.3 70 0.0015 25.9 3.0 16 68-83 21-36 (158)
103 PF11044 TMEMspv1-c74-12: Plec 27.2 95 0.0021 19.8 3.0 11 56-66 5-15 (49)
104 PF03100 CcmE: CcmE; InterPro 27.2 80 0.0017 24.6 3.3 8 132-139 83-90 (131)
105 PF06024 DUF912: Nucleopolyhed 26.7 84 0.0018 23.4 3.2 8 74-81 79-86 (101)
106 KOG2927 Membrane component of 26.5 47 0.001 30.6 2.1 27 56-82 225-251 (372)
107 PF01621 Fusion_gly_K: Cell fu 26.3 62 0.0013 29.6 2.8 18 48-65 292-309 (337)
108 PF12321 DUF3634: Protein of u 26.3 37 0.00081 25.9 1.2 16 75-90 11-28 (108)
109 PHA03292 envelope glycoprotein 26.3 1E+02 0.0022 28.7 4.2 7 44-50 310-316 (413)
110 PF04415 DUF515: Protein of un 26.1 66 0.0014 30.3 3.1 6 78-83 53-58 (416)
111 PHA03278 envelope glycoprotein 26.0 73 0.0016 29.3 3.2 16 50-65 299-314 (347)
112 KOG0810 SNARE protein Syntaxin 25.9 26 0.00057 31.5 0.4 22 48-69 265-286 (297)
113 PF00957 Synaptobrevin: Synapt 25.9 36 0.00078 24.4 1.1 8 51-58 61-68 (89)
114 PF04834 Adeno_E3_14_5: Early 25.4 83 0.0018 23.5 2.9 26 56-81 22-47 (97)
115 PF01102 Glycophorin_A: Glycop 25.3 40 0.00086 26.3 1.2 16 66-81 71-86 (122)
116 smart00831 Cation_ATPase_N Cat 25.1 1.1E+02 0.0024 20.1 3.3 6 69-74 54-59 (64)
117 PF13807 GNVR: G-rich domain o 25.0 38 0.00083 23.9 1.1 13 68-80 66-78 (82)
118 PF14828 Amnionless: Amnionles 24.8 40 0.00087 32.0 1.4 23 66-88 347-369 (437)
119 PRK05886 yajC preprotein trans 24.4 39 0.00084 25.8 1.0 12 73-84 14-25 (109)
120 cd07912 Tweety_N N-terminal do 24.2 1.1E+02 0.0024 28.9 4.2 14 56-69 79-92 (418)
121 PF08693 SKG6: Transmembrane a 24.1 67 0.0015 20.0 1.9 9 74-82 29-37 (40)
122 PRK13150 cytochrome c-type bio 23.8 2.3E+02 0.0049 23.1 5.4 13 169-181 134-146 (159)
123 PF15330 SIT: SHP2-interacting 23.6 65 0.0014 24.4 2.1 9 105-113 47-55 (107)
124 PF09788 Tmemb_55A: Transmembr 23.6 80 0.0017 27.7 2.9 24 53-76 196-219 (256)
125 PF01690 PLRV_ORF5: Potato lea 23.0 82 0.0018 30.1 3.1 11 184-194 180-190 (465)
126 TIGR01478 STEVOR variant surfa 22.9 58 0.0013 29.1 1.9 22 58-81 261-282 (295)
127 PF00287 Na_K-ATPase: Sodium / 22.3 47 0.001 29.7 1.3 40 51-90 36-75 (289)
128 PTZ00370 STEVOR; Provisional 22.3 60 0.0013 29.0 2.0 22 58-81 257-278 (296)
129 PRK10697 DNA-binding transcrip 21.9 66 0.0014 24.9 1.9 16 72-87 54-69 (118)
130 PRK13836 conjugal transfer pro 21.8 1.1E+02 0.0024 26.0 3.4 28 56-83 30-57 (220)
131 COG5294 Uncharacterized protei 21.7 87 0.0019 24.0 2.4 14 109-122 53-66 (113)
132 PF11337 DUF3139: Protein of u 21.7 82 0.0018 22.5 2.3 10 74-83 21-30 (85)
133 PRK10775 cell division protein 21.4 1.3E+02 0.0027 26.7 3.8 25 111-136 108-132 (276)
134 PTZ00116 signal peptidase; Pro 21.2 3.4E+02 0.0075 22.7 6.1 45 83-127 36-86 (185)
135 PF10969 DUF2771: Protein of u 21.2 1.1E+02 0.0025 24.8 3.2 17 76-92 22-41 (161)
136 PF14257 DUF4349: Domain of un 21.1 1.1E+02 0.0024 26.5 3.4 14 68-81 248-261 (262)
137 PF13598 DUF4139: Domain of un 20.4 5.5E+02 0.012 22.5 7.9 38 109-150 167-204 (317)
138 PF03672 UPF0154: Uncharacteri 20.4 57 0.0012 22.5 1.1 13 65-77 4-16 (64)
139 KOG0162 Myosin class I heavy c 20.3 1.1E+02 0.0024 31.2 3.5 24 23-46 1025-1050(1106)
No 1
>PLN03160 uncharacterized protein; Provisional
Probab=100.00 E-value=9.3e-40 Score=279.00 Aligned_cols=214 Identities=15% Similarity=0.236 Sum_probs=168.8
Q ss_pred CCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCceehhhHHHHHHHHHHHHHHHHHHhheeee
Q 047356 1 MADYQKIHPVMDVEAAASTKEKGSSSHQQQNPPQRSIPVMHPNPPKKSRSCFCKCFCWTVSILVLLLIILAAIGGILYLV 80 (241)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~rr~~ccr~~~~~~~~ll~lill~gi~~~il~lv 80 (241)
|++.+..-|. -+.++.-+||..+ +. +...++||++||+||+|+++++++ ++++++.++|++
T Consensus 1 ~~~~~~~~p~-a~~~~~~~~d~~~--~~-------------~~~~~~~r~~~~~c~~~~~a~~l~---l~~v~~~l~~~v 61 (219)
T PLN03160 1 MAETEQVRPL-APAAFRLRSDEEE--AT-------------NHLKKTRRRNCIKCCGCITATLLI---LATTILVLVFTV 61 (219)
T ss_pred CCccccCCCC-CCCcccccCchhh--cC-------------cchhccccccceEEHHHHHHHHHH---HHHHHHheeeEE
Confidence 7777777673 2333335665433 11 111223455666666666655443 366677778999
Q ss_pred eeCCCCEEEEeeeEEeeeecCC----CceeEEEEEEEEEEeCCCceeEEEECCCcEEEEEeCceeeeeccCcceeecCCC
Q 047356 81 FQPKLPKYSVDSLRIRDLRLNL----DLTLYAQFDVKITANNPNKKIGIYYEKGGKLSVWDERAKLCEGFLPKFYQGHQN 156 (241)
Q Consensus 81 ~rPk~P~f~V~s~~v~~f~~~~----~~~l~~~~~~~l~~~NPN~k~~i~Y~~~~~v~v~Y~g~~Lg~~~vp~f~q~~r~ 156 (241)
||||.|+|+|+++++++|++++ +..+|++++++++++|||. ++|+|++. ++.++|+|+.+|++.+|+|+|++++
T Consensus 62 frPk~P~~~v~~v~l~~~~~~~~~~~~~~~n~tl~~~v~v~NPN~-~~~~Y~~~-~~~v~Y~g~~vG~a~~p~g~~~ar~ 139 (219)
T PLN03160 62 FRVKDPVIKMNGVTVTKLELINNTTLRPGTNITLIADVSVKNPNV-ASFKYSNT-TTTIYYGGTVVGEARTPPGKAKARR 139 (219)
T ss_pred EEccCCeEEEEEEEEeeeeeccCCCCceeEEEEEEEEEEEECCCc-eeEEEcCe-EEEEEECCEEEEEEEcCCcccCCCC
Confidence 9999999999999999999875 3467888999999999997 99999986 6999999999999999999999999
Q ss_pred eEEEEEEEEEee-ccChhHHHHHHHHhcCCeEEEEEEEEEEEEEEEeEEEEeeEEEEEEeEEEEecCCCCceeeeeccCc
Q 047356 157 VTKLDVALTGQT-QYGSTLMKAIQEQQQTGRIPLDLKVDAPVAIKLGKLKLRKVKILGQCLLVVDSLSANNKISIKASNC 235 (241)
Q Consensus 157 tt~v~~~l~g~~-~~~~~~~~~l~~d~~~G~V~l~v~v~~~vr~kvg~~~~~~~~v~V~C~l~v~~~~~~~~~~i~~~~C 235 (241)
++.+++++.... .+.+ ...|.+|..+|.++|++++++++++++|++.+++++++++|++.++.. ...+++++|
T Consensus 140 T~~l~~tv~~~~~~~~~--~~~L~~D~~~G~v~l~~~~~v~gkVkv~~i~k~~v~~~v~C~v~V~~~----~~~i~~~~C 213 (219)
T PLN03160 140 TMRMNVTVDIIPDKILS--VPGLLTDISSGLLNMNSYTRIGGKVKILKIIKKHVVVKMNCTMTVNIT----SQAIQGQKC 213 (219)
T ss_pred eEEEEEEEEEEeceecc--chhHHHHhhCCeEEEEEEEEEEEEEEEEEEEEEEEEEEEEeEEEEECC----CCEEeccEe
Confidence 999999876652 2222 256899999999999999999999999999999999999999999753 247899999
Q ss_pred EEEecC
Q 047356 236 SFNLKL 241 (241)
Q Consensus 236 ~~~~~l 241 (241)
+.+++|
T Consensus 214 ~~~~~~ 219 (219)
T PLN03160 214 KRHVDL 219 (219)
T ss_pred cccccC
Confidence 999876
No 2
>PF03168 LEA_2: Late embryogenesis abundant protein; InterPro: IPR004864 Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress [, ]. The function of these proteins is unknown. ; PDB: 3BUT_A 1XO8_A 1YYC_A.
Probab=99.45 E-value=6.5e-13 Score=98.99 Aligned_cols=98 Identities=23% Similarity=0.421 Sum_probs=73.6
Q ss_pred EEEEeCCCceeEEEECCCcEEEEEeCceeee-eccCcceeecCCCeEEEEEEEEEeeccChhHHHHHHHHhcCCeEEEEE
Q 047356 113 KITANNPNKKIGIYYEKGGKLSVWDERAKLC-EGFLPKFYQGHQNVTKLDVALTGQTQYGSTLMKAIQEQQQTGRIPLDL 191 (241)
Q Consensus 113 ~l~~~NPN~k~~i~Y~~~~~v~v~Y~g~~Lg-~~~vp~f~q~~r~tt~v~~~l~g~~~~~~~~~~~l~~d~~~G~V~l~v 191 (241)
+|+++|||. ++++|++. +++++|+|..+| ....++|+|++++++.+.+.++... ..+...+.++. +|..++++
T Consensus 1 ~l~v~NPN~-~~i~~~~~-~~~v~~~g~~v~~~~~~~~~~i~~~~~~~v~~~v~~~~---~~l~~~l~~~~-~~~~~~~v 74 (101)
T PF03168_consen 1 TLSVRNPNS-FGIRYDSI-EYDVYYNGQRVGTGGSLPPFTIPARSSTTVPVPVSVDY---SDLPRLLKDLL-AGRVPFDV 74 (101)
T ss_dssp EEEEEESSS-S-EEEEEE-EEEEEESSSEEEEEEECE-EEESSSCEEEEEEEEEEEH---HHHHHHHHHHH-HTTSCEEE
T ss_pred CEEEECCCc-eeEEEeCE-EEEEEECCEEEECccccCCeEECCCCcEEEEEEEEEcH---HHHHHHHHhhh-ccccceEE
Confidence 689999998 99999998 699999999999 7789999999999999888776662 22356667777 77888888
Q ss_pred EEEEEEEEEE-eEEEEeeEEEEEEeE
Q 047356 192 KVDAPVAIKL-GKLKLRKVKILGQCL 216 (241)
Q Consensus 192 ~v~~~vr~kv-g~~~~~~~~v~V~C~ 216 (241)
.+++++++++ +.....+..+.++|+
T Consensus 75 ~~~~~g~~~v~~~~~~~~~~v~~~~~ 100 (101)
T PF03168_consen 75 TYRIRGTFKVLGTPIFGSVRVPVSCE 100 (101)
T ss_dssp EEEEEEEEE-EE-TTTSCEEEEEEEE
T ss_pred EEEEEEEEEEcccceeeeEEEeEEeE
Confidence 8888888884 433333445555554
No 3
>smart00769 WHy Water Stress and Hypersensitive response.
Probab=98.48 E-value=3.3e-06 Score=63.39 Aligned_cols=88 Identities=23% Similarity=0.191 Sum_probs=65.9
Q ss_pred cCCCceeEEEEEEEEEEeCCCceeEEEECCCcEEEEEeCceeeeeccCc-ceeecCCCeEEEEEEEEEeeccChhHHHHH
Q 047356 100 LNLDLTLYAQFDVKITANNPNKKIGIYYEKGGKLSVWDERAKLCEGFLP-KFYQGHQNVTKLDVALTGQTQYGSTLMKAI 178 (241)
Q Consensus 100 ~~~~~~l~~~~~~~l~~~NPN~k~~i~Y~~~~~v~v~Y~g~~Lg~~~vp-~f~q~~r~tt~v~~~l~g~~~~~~~~~~~l 178 (241)
......++.++.+++.+.|||. +.+.|++. +..++|+|..+|++..+ ++..++++++.+.++++.... ....+
T Consensus 7 ~~~~~~~~~~~~l~l~v~NPN~-~~l~~~~~-~y~l~~~g~~v~~g~~~~~~~ipa~~~~~v~v~~~~~~~----~~~~~ 80 (100)
T smart00769 7 WGPVSGLEIEIVLKVKVQNPNP-FPIPVNGL-SYDLYLNGVELGSGEIPDSGTLPGNGRTVLDVPVTVNLF----LAEAL 80 (100)
T ss_pred eccccceEEEEEEEEEEECCCC-CccccccE-EEEEEECCEEEEEEEcCCCcEECCCCcEEEEEEEEeehh----HhHHH
Confidence 3334467899999999999995 99999997 58999999999999986 799999999998888766421 22444
Q ss_pred HHHhcCCe-EEEEEEE
Q 047356 179 QEQQQTGR-IPLDLKV 193 (241)
Q Consensus 179 ~~d~~~G~-V~l~v~v 193 (241)
..++.+|. ++++++.
T Consensus 81 ~~~l~~~~~~~y~l~g 96 (100)
T smart00769 81 IWHIANGEEIPYRLDG 96 (100)
T ss_pred HHhhccCCCccEEEEE
Confidence 55555443 4444433
No 4
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=97.88 E-value=0.00048 Score=59.31 Aligned_cols=83 Identities=12% Similarity=0.138 Sum_probs=60.8
Q ss_pred CCCCEEEEeeeEEeeeecCC-CceeEEEEEEEEEEeCCCceeEEEECCCcEEEEEeCceeeeeccCcce-eecCCCeEEE
Q 047356 83 PKLPKYSVDSLRIRDLRLNL-DLTLYAQFDVKITANNPNKKIGIYYEKGGKLSVWDERAKLCEGFLPKF-YQGHQNVTKL 160 (241)
Q Consensus 83 Pk~P~f~V~s~~v~~f~~~~-~~~l~~~~~~~l~~~NPN~k~~i~Y~~~~~v~v~Y~g~~Lg~~~vp~f-~q~~r~tt~v 160 (241)
|+.-.++-.++......++. ...+..++.-.|.+.||| ...+.-.+. .+++.|....+|.+..... ..++++.+.+
T Consensus 98 PRsV~v~~~gv~s~~V~f~~~~~~v~l~itn~lNIsN~N-Fy~V~Vt~~-s~qv~~~~~VVG~~~~~~~~~I~Prs~~q~ 175 (238)
T PF07092_consen 98 PRSVTVSPVGVKSVTVSFNPDKSTVQLNITNTLNISNPN-FYPVTVTNL-SIQVLYMKTVVGKGKNSNITVIGPRSSKQV 175 (238)
T ss_pred CcEEEEecCcEEEEEEEEeCCCCEEEEEEEEEEEccCCC-EEEEEEEeE-EEEEEEEEeEEeeeEecceEEecccCCceE
Confidence 77555554444444444443 356788889999999999 699999997 5999999999999987654 5678877766
Q ss_pred EEEEEEe
Q 047356 161 DVALTGQ 167 (241)
Q Consensus 161 ~~~l~g~ 167 (241)
..++...
T Consensus 176 ~~tV~t~ 182 (238)
T PF07092_consen 176 NYTVKTT 182 (238)
T ss_pred EEEeeEE
Confidence 6665544
No 5
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=97.79 E-value=0.00015 Score=66.19 Aligned_cols=87 Identities=23% Similarity=0.329 Sum_probs=54.3
Q ss_pred CCCCceehhhHHHHHHHHHHHHHHHHHHhheeeeeeCCCCEEEEeeeEEeeeecCCCceeEEEEEEEEEEeCCCceeEEE
Q 047356 47 KSRSCFCKCFCWTVSILVLLLIILAAIGGILYLVFQPKLPKYSVDSLRIRDLRLNLDLTLYAQFDVKITANNPNKKIGIY 126 (241)
Q Consensus 47 ~rr~~ccr~~~~~~~~ll~lill~gi~~~il~lv~rPk~P~f~V~s~~v~~f~~~~~~~l~~~~~~~l~~~NPN~k~~i~ 126 (241)
++|++|.|..+|+++.+++|+++.|+++|+| ..-+| --.|+=..+++.-.+ .--.-|++++.+.||| .+.|.
T Consensus 294 r~r~~~~r~~~c~~~~i~~lL~ig~~~gFv~-AttKp---L~~v~v~~I~NVlaS---~qELmfdl~V~A~NPn-~~~V~ 365 (387)
T PF12751_consen 294 RQRSWFSRFASCIYLSILLLLVIGFAIGFVF-ATTKP---LTDVQVVSIQNVLAS---EQELMFDLTVEAFNPN-WFTVT 365 (387)
T ss_pred ccccHHhhhhHHHHHHHHHHHHHHHHHHhhh-hcCcc---cccceEEEeeeeeec---cceEEEeeEEEEECCC-eEEEE
Confidence 4556777777777766666655555555554 34444 222222233332222 2346789999999999 59999
Q ss_pred ECCCcEEEEEeCceee
Q 047356 127 YEKGGKLSVWDERAKL 142 (241)
Q Consensus 127 Y~~~~~v~v~Y~g~~L 142 (241)
.++. .++||-+..-+
T Consensus 366 I~d~-dldIFAKS~yv 380 (387)
T PF12751_consen 366 IDDM-DLDIFAKSRYV 380 (387)
T ss_pred eccc-eeeeEecCCcc
Confidence 9998 59998654333
No 6
>COG5608 LEA14-like dessication related protein [Defense mechanisms]
Probab=97.25 E-value=0.041 Score=44.27 Aligned_cols=116 Identities=16% Similarity=0.146 Sum_probs=75.8
Q ss_pred CCCEEEEeeeEEeeeecCCCceeEEEEEEEEEEeCCCceeEEEECCCcEEEEEeCceeeeeccC-cceeecCCCeEEEEE
Q 047356 84 KLPKYSVDSLRIRDLRLNLDLTLYAQFDVKITANNPNKKIGIYYEKGGKLSVWDERAKLCEGFL-PKFYQGHQNVTKLDV 162 (241)
Q Consensus 84 k~P~f~V~s~~v~~f~~~~~~~l~~~~~~~l~~~NPN~k~~i~Y~~~~~v~v~Y~g~~Lg~~~v-p~f~q~~r~tt~v~~ 162 (241)
+.|...--.+..-.... ...++-.++.++|||. +.+-..+. +..++-+|..+|+|.. .++..++.+...+.+
T Consensus 31 ~~p~ve~~ka~wGkvt~-----s~~EiV~t~KiyNPN~-fPipVtgl-~y~vymN~Iki~eG~~~k~~~v~p~S~~tvdv 103 (161)
T COG5608 31 KKPGVESMKAKWGKVTN-----SETEIVGTLKIYNPNP-FPIPVTGL-QYAVYMNDIKIGEGEILKGTTVPPNSRETVDV 103 (161)
T ss_pred CCCCceEEEEEEEEEec-----cceEEEEEEEecCCCC-cceeeece-EEEEEEcceEeeccccccceEECCCCeEEEEE
Confidence 44555544444443322 2468889999999995 99999888 5889999999999975 668889999888888
Q ss_pred EEEEeeccChhHHHHHHHHhcCCeE-EEEEEEEEEEEEEEeEEEEeeEEEE
Q 047356 163 ALTGQTQYGSTLMKAIQEQQQTGRI-PLDLKVDAPVAIKLGKLKLRKVKIL 212 (241)
Q Consensus 163 ~l~g~~~~~~~~~~~l~~d~~~G~V-~l~v~v~~~vr~kvg~~~~~~~~v~ 212 (241)
.+.-+. +.....+...+.+|.= +.+++ .+..+++|+.. ..+.++
T Consensus 104 ~l~~d~---~~~ke~w~~hi~ngErs~Ir~~--i~~~v~vg~~d-~eVpi~ 148 (161)
T COG5608 104 PLRLDN---SKIKEWWVTHIENGERSTIRVR--IKGVVKVGGMD-YEVPIK 148 (161)
T ss_pred EEEEeh---HHHHHHHHHHhhccCcccEEEE--EEEEEEEccEE-EEEEEE
Confidence 775542 2334556667766653 33333 33444455443 334443
No 7
>PLN03160 uncharacterized protein; Provisional
Probab=95.96 E-value=0.07 Score=45.74 Aligned_cols=103 Identities=21% Similarity=0.276 Sum_probs=57.4
Q ss_pred CCCCCceehhhHHHHHHHHHHHHHHHHHHhheeeeeeCC--CCEEEEeeeEEee---eecCCCcee-------EEEEEEE
Q 047356 46 KKSRSCFCKCFCWTVSILVLLLIILAAIGGILYLVFQPK--LPKYSVDSLRIRD---LRLNLDLTL-------YAQFDVK 113 (241)
Q Consensus 46 k~rr~~ccr~~~~~~~~ll~lill~gi~~~il~lv~rPk--~P~f~V~s~~v~~---f~~~~~~~l-------~~~~~~~ 113 (241)
++++.+||+|+|-++.+|.++++ ++++++|=.-.|+ .-.++++++.++. .+..-+.++ |.|. +.
T Consensus 33 r~~~~~c~~~~~a~~l~l~~v~~---~l~~~vfrPk~P~~~v~~v~l~~~~~~~~~~~~~~~n~tl~~~v~v~NPN~-~~ 108 (219)
T PLN03160 33 RRNCIKCCGCITATLLILATTIL---VLVFTVFRVKDPVIKMNGVTVTKLELINNTTLRPGTNITLIADVSVKNPNV-AS 108 (219)
T ss_pred cccceEEHHHHHHHHHHHHHHHH---heeeEEEEccCCeEEEEEEEEeeeeeccCCCCceeEEEEEEEEEEEECCCc-ee
Confidence 46677778887777666666433 3334455567884 5667777776642 111111122 3444 34
Q ss_pred EEEeCCCceeEEEECCCcEEEEEeCceeeeeccCcceeecCCCeEE
Q 047356 114 ITANNPNKKIGIYYEKGGKLSVWDERAKLCEGFLPKFYQGHQNVTK 159 (241)
Q Consensus 114 l~~~NPN~k~~i~Y~~~~~v~v~Y~g~~Lg~~~vp~f~q~~r~tt~ 159 (241)
+.-+ |..+.++|++. .+. ...+..+.+++..+..-+.+.
T Consensus 109 ~~Y~--~~~~~v~Y~g~-~vG----~a~~p~g~~~ar~T~~l~~tv 147 (219)
T PLN03160 109 FKYS--NTTTTIYYGGT-VVG----EARTPPGKAKARRTMRMNVTV 147 (219)
T ss_pred EEEc--CeEEEEEECCE-EEE----EEEcCCcccCCCCeEEEEEEE
Confidence 5554 34588999763 232 224555666766666666554
No 8
>TIGR03602 streptolysinS bacteriocin protoxin, streptolysin S family. Members of this family are bacteriocin precursors. These small, ribosomally produced polypeptide precursors are extensively processed post-translationally. This family belongs to a class of heterocycle-containing bacteriocins, including streptolysin S from Streptococcus pyogenes, and related bacteriocins from Streptococcus iniae and Clostridium botulinum. Streptolysin S is hemolytic. Bacteriocin genes in general are small and highly diverse, with odd sequence composition, and are easily missed by many gene-finding programs.
Probab=91.03 E-value=0.018 Score=37.25 Aligned_cols=12 Identities=42% Similarity=1.187 Sum_probs=7.3
Q ss_pred CceehhhHHHHH
Q 047356 50 SCFCKCFCWTVS 61 (241)
Q Consensus 50 ~~ccr~~~~~~~ 61 (241)
+|||||+||+++
T Consensus 25 gcccccc~cc~s 36 (56)
T TIGR03602 25 GCCCCCCCCCFS 36 (56)
T ss_pred CeEEEeccEEEE
Confidence 577666666543
No 9
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=90.76 E-value=0.67 Score=36.01 Aligned_cols=51 Identities=20% Similarity=0.216 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhheeeee--eCCCCEEEEeeeEEeeeecCCCceeEEEEEEEEEEeCCCce
Q 047356 65 LLLIILAAIGGILYLVF--QPKLPKYSVDSLRIRDLRLNLDLTLYAQFDVKITANNPNKK 122 (241)
Q Consensus 65 ~lill~gi~~~il~lv~--rPk~P~f~V~s~~v~~f~~~~~~~l~~~~~~~l~~~NPN~k 122 (241)
.++++++++.+++|.++ +++.|.+++......+- ....+-+-++++|-..+
T Consensus 11 s~~ill~viglv~y~~l~~~~~pp~l~v~~~~~~r~-------~~gqyyVpF~V~N~gg~ 63 (122)
T TIGR02588 11 STLILAAMFGLVAYDWLRYSNKAAVLEVAPAEVERM-------QTGQYYVPFAIHNLGGT 63 (122)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCCeEEEeehheeEE-------eCCEEEEEEEEEeCCCc
Confidence 34456777777777665 56889999888776542 23557778888887753
No 10
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]
Probab=82.88 E-value=5.8 Score=32.35 Aligned_cols=26 Identities=23% Similarity=0.499 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhheeeee
Q 047356 56 FCWTVSILVLLLIILAAIGGILYLVF 81 (241)
Q Consensus 56 ~~~~~~~ll~lill~gi~~~il~lv~ 81 (241)
..|++.+++++++++|+.+..+|+..
T Consensus 17 ~~~I~liv~ivl~~~a~~~~~~~~~~ 42 (159)
T COG1580 17 SLWILLIVLIVLLALAGAGYFFWFGS 42 (159)
T ss_pred eeehHHHHHHHHHHHHHHHHHHhhhc
Confidence 55888777777778888888888775
No 11
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=74.98 E-value=1.2 Score=30.04 Aligned_cols=6 Identities=0% Similarity=-0.031 Sum_probs=2.2
Q ss_pred hhHHHH
Q 047356 55 CFCWTV 60 (241)
Q Consensus 55 ~~~~~~ 60 (241)
++..++
T Consensus 35 ~v~~v~ 40 (60)
T PF06072_consen 35 AVAIVF 40 (60)
T ss_pred HHHHHH
Confidence 333333
No 12
>KOG3950 consensus Gamma/delta sarcoglycan [Cytoskeleton]
Probab=73.47 E-value=7.6 Score=33.84 Aligned_cols=23 Identities=30% Similarity=0.338 Sum_probs=17.8
Q ss_pred eeEEEEEEEEEEeCCCceeEEEE
Q 047356 105 TLYAQFDVKITANNPNKKIGIYY 127 (241)
Q Consensus 105 ~l~~~~~~~l~~~NPN~k~~i~Y 127 (241)
++...=++++.++|||.++.=.+
T Consensus 105 ~~~S~rnvtvnarn~~g~v~~~l 127 (292)
T KOG3950|consen 105 YLQSARNVTVNARNPNGKVTGQL 127 (292)
T ss_pred EEEeccCeeEEccCCCCceeeeE
Confidence 55667789999999999876443
No 13
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=72.45 E-value=26 Score=28.38 Aligned_cols=13 Identities=8% Similarity=-0.286 Sum_probs=5.7
Q ss_pred EECCCcEEEEEeCc
Q 047356 126 YYEKGGKLSVWDER 139 (241)
Q Consensus 126 ~Y~~~~~v~v~Y~g 139 (241)
+|-.. .+++.+.+
T Consensus 79 rylkv-~i~L~~~~ 91 (162)
T PRK07021 79 RVLYV-GLTLRLPD 91 (162)
T ss_pred eEEEE-EEEEEECC
Confidence 44443 24454444
No 14
>PF14155 DUF4307: Domain of unknown function (DUF4307)
Probab=71.92 E-value=10 Score=28.98 Aligned_cols=62 Identities=16% Similarity=0.224 Sum_probs=28.5
Q ss_pred eeEEeeeecCCCceeEEEEEEEEEEeCCCceeEEEECCCcEEEEEeCceeeeec--cCcceeecCCCeEEEEEEE
Q 047356 92 SLRIRDLRLNLDLTLYAQFDVKITANNPNKKIGIYYEKGGKLSVWDERAKLCEG--FLPKFYQGHQNVTKLDVAL 164 (241)
Q Consensus 92 s~~v~~f~~~~~~~l~~~~~~~l~~~NPN~k~~i~Y~~~~~v~v~Y~g~~Lg~~--~vp~f~q~~r~tt~v~~~l 164 (241)
+....+|++.+++.+..+|+++ -. |.. ..+.- . -...|++..+|.- .+|+ +...+..+.+++
T Consensus 35 ~~~~~gf~vv~d~~v~v~f~Vt--r~-~~~--~a~C~-V--rA~~~d~aeVGrreV~vp~---~~~~~~~~~v~v 98 (112)
T PF14155_consen 35 SAEVIGFEVVDDSTVEVTFDVT--RD-PGR--PAVCI-V--RALDYDGAEVGRREVLVPP---SGERTVRVTVTV 98 (112)
T ss_pred eEEEEEEEECCCCEEEEEEEEE--EC-CCC--CEEEE-E--EEEeCCCCEEEEEEEEECC---CCCcEEEEEEEE
Confidence 3444555555554444444333 22 553 23321 1 1245777778754 4565 333334444444
No 15
>PF09307 MHC2-interact: CLIP, MHC2 interacting; InterPro: IPR015386 This domain is found in MHC class II-associated invariant chain (Ii), and in class II invariant chain-associated peptide (CLIP), and is required for association with class II major histocompatibility complex (MHC II) in the MHC II processing pathway []. Ii plays a critical role in the assembly of the MHC, as well as in MHC II antigen processing by stabilising peptide-free class II alpha/beta heterodimers in a complex soon after their synthesis and directing transport of the complex from the endoplasmic reticulum to compartments where peptide loading of class II takes place []. In antigen-presenting cells (APCs), loading of MHC II molecules with peptides is regulated by Ii, which blocks MHC II antigen-binding sites in pre-endosomal compartments []. Several factors modulate the surface expression of MHC II molecules via post-Golgi mechanisms, including CLIP. The Invariant chain contains a single transmembrane domain. Ii first assembles into a trimer and then associates with three class II alpha/beta MHC heterodimers. Although the membrane-proximal region of the Ii luminal domain is structurally disordered, the C-terminal segment of the luminal domain is largely alpha-helical and contains a major interaction site for the Ii trimer []. More information about these proteins can be found at Protein of the Month: MHC [].; GO: 0042289 MHC class II protein binding, 0006886 intracellular protein transport, 0006955 immune response, 0019882 antigen processing and presentation, 0016020 membrane; PDB: 1A6A_C 3QXD_F 3QXA_F 3PDO_C 1MUJ_C 3PGD_F 3PGC_F.
Probab=69.16 E-value=1.5 Score=33.66 Aligned_cols=34 Identities=21% Similarity=0.264 Sum_probs=0.0
Q ss_pred CCCceehhhHHHHHHHHHHHHHHHHHHhheeeeee
Q 047356 48 SRSCFCKCFCWTVSILVLLLIILAAIGGILYLVFQ 82 (241)
Q Consensus 48 rr~~ccr~~~~~~~~ll~lill~gi~~~il~lv~r 82 (241)
+|+.|.|++-|.-..+|+.++++|-++.+ |++|.
T Consensus 24 ~~~s~sra~~vagltvLa~LLiAGQa~Ta-Yfv~~ 57 (114)
T PF09307_consen 24 QRGSCSRALKVAGLTVLACLLIAGQAVTA-YFVFQ 57 (114)
T ss_dssp -----------------------------------
T ss_pred CCCCccchhHHHHHHHHHHHHHHhHHHHH-HHHHH
Confidence 44677888888766666666677777665 55665
No 16
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=68.18 E-value=6.9 Score=25.06 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHhheeeeeeC
Q 047356 61 SILVLLLIILAAIGGILYLVFQP 83 (241)
Q Consensus 61 ~~ll~lill~gi~~~il~lv~rP 83 (241)
.++++..+++++++..+|..|-|
T Consensus 10 ~~i~i~~lL~~~TgyaiYtaFGp 32 (46)
T PRK13183 10 LAITILAILLALTGFGIYTAFGP 32 (46)
T ss_pred HHHHHHHHHHHHhhheeeeccCC
Confidence 34455667899999999999987
No 17
>PF10177 DUF2371: Uncharacterised conserved protein (DUF2371); InterPro: IPR018787 This family of proteins with no known function is conserved from nematodes to humans. It includes members of the TMEM200 family of transmembrane proteins.
Probab=67.56 E-value=12 Score=29.91 Aligned_cols=30 Identities=17% Similarity=0.193 Sum_probs=16.7
Q ss_pred ehhhHHHHHHHHHHHHHHHHHHhheeeeeeCC
Q 047356 53 CKCFCWTVSILVLLLIILAAIGGILYLVFQPK 84 (241)
Q Consensus 53 cr~~~~~~~~ll~lill~gi~~~il~lv~rPk 84 (241)
||...+.++++=++++++|++..++ -|.|+
T Consensus 35 l~s~Sg~~l~lG~lvllvGiaMAv~--GYwp~ 64 (141)
T PF10177_consen 35 LCSPSGLFLLLGILVLLVGIAMAVL--GYWPK 64 (141)
T ss_pred EecHHHHHHHHHHHHHHHhhHhhee--ecccc
Confidence 3344444444445666777776654 34565
No 18
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=65.12 E-value=3.7 Score=32.02 Aligned_cols=9 Identities=11% Similarity=0.848 Sum_probs=4.2
Q ss_pred HHHHHHHHH
Q 047356 58 WTVSILVLL 66 (241)
Q Consensus 58 ~~~~~ll~l 66 (241)
|+++++|++
T Consensus 2 W~l~~iii~ 10 (130)
T PF12273_consen 2 WVLFAIIIV 10 (130)
T ss_pred eeeHHHHHH
Confidence 555444443
No 19
>CHL00020 psbN photosystem II protein N
Probab=64.74 E-value=7.7 Score=24.52 Aligned_cols=23 Identities=17% Similarity=0.309 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHhheeeeeeC
Q 047356 61 SILVLLLIILAAIGGILYLVFQP 83 (241)
Q Consensus 61 ~~ll~lill~gi~~~il~lv~rP 83 (241)
.++++..+++++++..+|..|-|
T Consensus 7 ~~i~i~~ll~~~Tgy~iYtaFGp 29 (43)
T CHL00020 7 VAIFISGLLVSFTGYALYTAFGQ 29 (43)
T ss_pred HHHHHHHHHHHhhheeeeeccCC
Confidence 44555667899999999999987
No 20
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=63.77 E-value=6.4 Score=24.92 Aligned_cols=23 Identities=17% Similarity=0.452 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHhheeeeeeC
Q 047356 61 SILVLLLIILAAIGGILYLVFQP 83 (241)
Q Consensus 61 ~~ll~lill~gi~~~il~lv~rP 83 (241)
..+++..+++++++..+|..|.|
T Consensus 7 ~~i~i~~~lv~~Tgy~iYtaFGp 29 (43)
T PF02468_consen 7 LAIFISCLLVSITGYAIYTAFGP 29 (43)
T ss_pred HHHHHHHHHHHHHhhhhhheeCC
Confidence 34455667889999999999986
No 21
>PF09624 DUF2393: Protein of unknown function (DUF2393); InterPro: IPR013417 The function of this protein is unknown. It is always found as part of a two-gene operon with IPR013416 from INTERPRO, a protein that appears to span the membrane seven times. It has so far been found in the bacteria Anabaena sp. (strain PCC 7120), Agrobacterium tumefaciens, Rhizobium meliloti, and Gloeobacter violaceus.
Probab=62.99 E-value=31 Score=27.24 Aligned_cols=63 Identities=19% Similarity=0.149 Sum_probs=38.4
Q ss_pred HHHhheeeeeeC--CCCEEEEeeeEEeeeecCCCceeEEEEEEEEEEeCCCceeEEEECCCcEEEEEeCceeeee
Q 047356 72 AIGGILYLVFQP--KLPKYSVDSLRIRDLRLNLDLTLYAQFDVKITANNPNKKIGIYYEKGGKLSVWDERAKLCE 144 (241)
Q Consensus 72 i~~~il~lv~rP--k~P~f~V~s~~v~~f~~~~~~~l~~~~~~~l~~~NPN~k~~i~Y~~~~~v~v~Y~g~~Lg~ 144 (241)
++.+++|.++.. +.+..++.+.+- ++. +-.+.+..+++|-.+ ..+..=.. ++++..++...++
T Consensus 32 ~~~~~~~~~l~~~~~~~~~~~~~~~~--l~~------~~~~~v~g~V~N~g~-~~i~~c~i-~~~l~~~~~~~~n 96 (149)
T PF09624_consen 32 LIPFFGYYWLDKYLKKIELTLTSQKR--LQY------SESFYVDGTVTNTGK-FTIKKCKI-TVKLYNDKQVSGN 96 (149)
T ss_pred HHHHHHHHHHhhhcCCceEEEeeeee--eee------ccEEEEEEEEEECCC-CEeeEEEE-EEEEEeCCCccCc
Confidence 345555555554 556666655543 333 356778899999884 67766555 4777776544443
No 22
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=62.33 E-value=11 Score=26.55 Aligned_cols=23 Identities=22% Similarity=0.743 Sum_probs=8.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhee
Q 047356 56 FCWTVSILVLLLIILAAIGGILY 78 (241)
Q Consensus 56 ~~~~~~~ll~lill~gi~~~il~ 78 (241)
..|...++.++++++.++...+|
T Consensus 46 ~~~~~~ii~ii~v~ii~~l~flY 68 (72)
T PF12575_consen 46 FNWIILIISIIFVLIIVLLTFLY 68 (72)
T ss_pred chHHHHHHHHHHHHHHHHHHHHH
Confidence 44433333333333333333444
No 23
>PRK10893 lipopolysaccharide exporter periplasmic protein; Provisional
Probab=59.95 E-value=93 Score=25.99 Aligned_cols=29 Identities=10% Similarity=0.009 Sum_probs=20.6
Q ss_pred eCCCCEEEEeeeEEeeeecCCCceeEEEEEE
Q 047356 82 QPKLPKYSVDSLRIRDLRLNLDLTLYAQFDV 112 (241)
Q Consensus 82 rPk~P~f~V~s~~v~~f~~~~~~~l~~~~~~ 112 (241)
.++.|.|.+++++...|+.+. .+++.+..
T Consensus 37 ~~~~Pdy~~~~~~~~~yd~~G--~l~y~l~a 65 (192)
T PRK10893 37 NNNDPTYQSQHTDTVVYNPEG--ALSYKLVA 65 (192)
T ss_pred CCCCCCEEEeccEEEEECCCC--CEEEEEEe
Confidence 367899999999998887653 34444433
No 24
>PHA02650 hypothetical protein; Provisional
Probab=59.86 E-value=8.3 Score=27.59 Aligned_cols=25 Identities=16% Similarity=0.264 Sum_probs=12.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHhheee
Q 047356 55 CFCWTVSILVLLLIILAAIGGILYL 79 (241)
Q Consensus 55 ~~~~~~~~ll~lill~gi~~~il~l 79 (241)
+..|...++++++++++++...+||
T Consensus 46 ~~~~~~~ii~i~~v~i~~l~~flYL 70 (81)
T PHA02650 46 WFNGQNFIFLIFSLIIVALFSFFVF 70 (81)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4446555544444444444444554
No 25
>PHA03054 IMV membrane protein; Provisional
Probab=59.66 E-value=8.6 Score=26.91 Aligned_cols=25 Identities=24% Similarity=0.703 Sum_probs=11.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHhheee
Q 047356 55 CFCWTVSILVLLLIILAAIGGILYL 79 (241)
Q Consensus 55 ~~~~~~~~ll~lill~gi~~~il~l 79 (241)
+..|...++++++++++++...+||
T Consensus 45 ~~~~~~~ii~l~~v~~~~l~~flYL 69 (72)
T PHA03054 45 CWGWYWLIIIFFIVLILLLLIYLYL 69 (72)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445554444444444444444443
No 26
>PHA02819 hypothetical protein; Provisional
Probab=59.62 E-value=8.8 Score=26.84 Aligned_cols=25 Identities=32% Similarity=0.366 Sum_probs=11.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHhheee
Q 047356 55 CFCWTVSILVLLLIILAAIGGILYL 79 (241)
Q Consensus 55 ~~~~~~~~ll~lill~gi~~~il~l 79 (241)
+..|...++++++++++++...+||
T Consensus 43 ~~~~~~~ii~l~~~~~~~~~~flYL 67 (71)
T PHA02819 43 SFLRYYLIIGLVTIVFVIIFIIFYL 67 (71)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445554444444444444444443
No 27
>KOG4331 consensus Polytopic membrane protein Prominin [General function prediction only]
Probab=56.62 E-value=8 Score=39.15 Aligned_cols=22 Identities=18% Similarity=0.306 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHhheeeeee
Q 047356 61 SILVLLLIILAAIGGILYLVFQ 82 (241)
Q Consensus 61 ~~ll~lill~gi~~~il~lv~r 82 (241)
+.+.+++++++++++|++...+
T Consensus 155 ~~l~Llvl~i~~ligv~~~fvt 176 (865)
T KOG4331|consen 155 CELELLVLAIELLIGVFRAFVT 176 (865)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555666666654443
No 28
>COG4698 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.07 E-value=10 Score=31.54 Aligned_cols=29 Identities=10% Similarity=0.193 Sum_probs=17.6
Q ss_pred HhheeeeeeCCCCEEEEeeeEE---eeeecCC
Q 047356 74 GGILYLVFQPKLPKYSVDSLRI---RDLRLNL 102 (241)
Q Consensus 74 ~~il~lv~rPk~P~f~V~s~~v---~~f~~~~ 102 (241)
+++.-+++.|+.|...+.+.+- ..|.+++
T Consensus 27 ~~i~~~vlsp~ee~t~~~~a~~~~~~~fqitt 58 (197)
T COG4698 27 VLIALFVLSPREEPTHLEDASEKSEKSFQITT 58 (197)
T ss_pred HHhheeeccCCCCCchhhccCcccceeEEEEc
Confidence 5555568889886666665543 3455443
No 29
>PHA02844 putative transmembrane protein; Provisional
Probab=55.89 E-value=11 Score=26.62 Aligned_cols=24 Identities=25% Similarity=0.456 Sum_probs=11.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhheee
Q 047356 56 FCWTVSILVLLLIILAAIGGILYL 79 (241)
Q Consensus 56 ~~~~~~~ll~lill~gi~~~il~l 79 (241)
..|...++++++++++++...+||
T Consensus 46 ~~~~~~ii~i~~v~~~~~~~flYL 69 (75)
T PHA02844 46 SSTKIWILTIIFVVFATFLTFLYL 69 (75)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345444444444444444555554
No 30
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=55.81 E-value=58 Score=25.49 Aligned_cols=58 Identities=17% Similarity=0.074 Sum_probs=35.6
Q ss_pred EEEeeeEEeeeecCCCceeEEEEEEEEEEeCCCceeEEEECCCcEEEEE-eCceeeeeccC
Q 047356 88 YSVDSLRIRDLRLNLDLTLYAQFDVKITANNPNKKIGIYYEKGGKLSVW-DERAKLCEGFL 147 (241)
Q Consensus 88 f~V~s~~v~~f~~~~~~~l~~~~~~~l~~~NPN~k~~i~Y~~~~~v~v~-Y~g~~Lg~~~v 147 (241)
-.++.+++++..+.....-.-.+.++.++.|... ....|-.+ .+++. .+|+.+.+-.+
T Consensus 48 ~~~~~l~i~~~~~~~~~~~~~~l~v~g~i~N~~~-~~~~~P~l-~l~L~D~~g~~l~~r~~ 106 (149)
T PF11906_consen 48 RDIDALKIESSDLRPVPDGPGVLVVSGTIRNRAD-FPQALPAL-ELSLLDAQGQPLARRVF 106 (149)
T ss_pred cCcceEEEeeeeEEeecCCCCEEEEEEEEEeCCC-CcccCceE-EEEEECCCCCEEEEEEE
Confidence 3555556555444432234566788889999985 67777666 46666 45666665433
No 31
>PHA02692 hypothetical protein; Provisional
Probab=55.68 E-value=13 Score=26.00 Aligned_cols=23 Identities=22% Similarity=0.457 Sum_probs=9.0
Q ss_pred hHHHHHHHH-HHHHHHHHHHhhee
Q 047356 56 FCWTVSILV-LLLIILAAIGGILY 78 (241)
Q Consensus 56 ~~~~~~~ll-~lill~gi~~~il~ 78 (241)
..|...+++ ++++++.++...+|
T Consensus 43 ~~~~~~ii~~~~~~~~~vll~flY 66 (70)
T PHA02692 43 VPWTTVFLIGLIAAAIGVLLCFHY 66 (70)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHH
Confidence 345444433 33333333333344
No 32
>COG5009 MrcA Membrane carboxypeptidase/penicillin-binding protein [Cell envelope biogenesis, outer membrane]
Probab=55.22 E-value=7.5 Score=39.13 Aligned_cols=36 Identities=33% Similarity=0.481 Sum_probs=27.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhheeeeeeCCCCEEE
Q 047356 54 KCFCWTVSILVLLLIILAAIGGILYLVFQPKLPKYS 89 (241)
Q Consensus 54 r~~~~~~~~ll~lill~gi~~~il~lv~rPk~P~f~ 89 (241)
|.++|++.++++++++.+.+++++|+.+.|+.|.+.
T Consensus 3 r~i~~~l~i~~~~~l~g~~~~~~~~~~~~~dLPd~~ 38 (797)
T COG5009 3 KLIKYLLGILVTLILLGAGALAGLYLYISPDLPDVE 38 (797)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChH
Confidence 456777777777777777778888888899999874
No 33
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=55.07 E-value=27 Score=34.79 Aligned_cols=9 Identities=11% Similarity=0.102 Sum_probs=3.5
Q ss_pred cccccCCCC
Q 047356 18 STKEKGSSS 26 (241)
Q Consensus 18 ~~~~~~~~~ 26 (241)
+.+.+..|.
T Consensus 288 ~~~~~~~~~ 296 (656)
T PRK06975 288 SKSVTSQPA 296 (656)
T ss_pred ccCCCCCCC
Confidence 333333433
No 34
>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=54.59 E-value=19 Score=28.51 Aligned_cols=7 Identities=0% Similarity=0.164 Sum_probs=3.3
Q ss_pred EEEEeCc
Q 047356 133 LSVWDER 139 (241)
Q Consensus 133 v~v~Y~g 139 (241)
+.+.+++
T Consensus 69 i~l~~~~ 75 (142)
T PRK07718 69 FKIETDS 75 (142)
T ss_pred EEEEECC
Confidence 4454444
No 35
>PF14221 DUF4330: Domain of unknown function (DUF4330)
Probab=54.56 E-value=1.2e+02 Score=24.79 Aligned_cols=17 Identities=29% Similarity=0.497 Sum_probs=9.5
Q ss_pred HHHHHHHHHhheeeeee
Q 047356 66 LLIILAAIGGILYLVFQ 82 (241)
Q Consensus 66 lill~gi~~~il~lv~r 82 (241)
++++++++++++|....
T Consensus 22 ~lvvl~v~~g~~~~~~~ 38 (168)
T PF14221_consen 22 ILVVLAVVVGIFWKPGL 38 (168)
T ss_pred HHHHHHHhheeEEEecc
Confidence 34455566666665444
No 36
>PRK01844 hypothetical protein; Provisional
Probab=54.29 E-value=13 Score=26.18 Aligned_cols=21 Identities=10% Similarity=0.327 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHhhee
Q 047356 58 WTVSILVLLLIILAAIGGILY 78 (241)
Q Consensus 58 ~~~~~ll~lill~gi~~~il~ 78 (241)
|+..++.++.+++|++++.+.
T Consensus 4 ~~~I~l~I~~li~G~~~Gff~ 24 (72)
T PRK01844 4 WLGILVGVVALVAGVALGFFI 24 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 554555556667777777553
No 37
>PRK14762 membrane protein; Provisional
Probab=53.93 E-value=24 Score=19.64 Aligned_cols=12 Identities=42% Similarity=0.794 Sum_probs=7.0
Q ss_pred hhhHHHHHHHHH
Q 047356 54 KCFCWTVSILVL 65 (241)
Q Consensus 54 r~~~~~~~~ll~ 65 (241)
+.+.|++.++++
T Consensus 2 ki~lw~i~iifl 13 (27)
T PRK14762 2 KIILWAVLIIFL 13 (27)
T ss_pred eeHHHHHHHHHH
Confidence 356787655444
No 38
>PHA02975 hypothetical protein; Provisional
Probab=53.45 E-value=17 Score=25.34 Aligned_cols=26 Identities=27% Similarity=0.356 Sum_probs=11.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhheee
Q 047356 54 KCFCWTVSILVLLLIILAAIGGILYL 79 (241)
Q Consensus 54 r~~~~~~~~ll~lill~gi~~~il~l 79 (241)
++..|...+++++.++++++...+||
T Consensus 40 ~~~~~~~~ii~i~~v~~~~~~~flYL 65 (69)
T PHA02975 40 KSSLSIILIIFIIFITCIAVFTFLYL 65 (69)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456554444444444444444443
No 39
>PF09604 Potass_KdpF: F subunit of K+-transporting ATPase (Potass_KdpF); InterPro: IPR011726 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the F subunit (KdpF) of a P-type K+-translocating ATPase (Kdp). KdpF is a very small integral membrane peptide. The kdpABC operon of Escherichia coli codes for the high affinity K+-translocating Kdp complex []. KdpF is found upstream of the KdpA subunit (IPR004623 from INTERPRO). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation. More information about this protein can be found at Protein of the Month: ATP Synthases [].
Probab=52.50 E-value=8.5 Score=21.45 Aligned_cols=20 Identities=15% Similarity=0.310 Sum_probs=13.6
Q ss_pred HHHHHHHHHHhheeeeeeCC
Q 047356 65 LLLIILAAIGGILYLVFQPK 84 (241)
Q Consensus 65 ~lill~gi~~~il~lv~rPk 84 (241)
.+++.+++.+.++|..++|.
T Consensus 4 ~~~v~~~L~~YL~~aLl~PE 23 (25)
T PF09604_consen 4 GGIVAVALFVYLFYALLRPE 23 (25)
T ss_pred HHHHHHHHHHHHHHHHhCcc
Confidence 34456667777777778885
No 40
>PF12505 DUF3712: Protein of unknown function (DUF3712); InterPro: IPR022185 This domain family is found in eukaryotes, and is approximately 130 amino acids in length.
Probab=52.22 E-value=1e+02 Score=23.47 Aligned_cols=67 Identities=13% Similarity=0.128 Sum_probs=39.4
Q ss_pred eeeeccCcceeecCCCeEEEEEEEEEeec-cChhHHHHHHHHh-cCCeEEEEEEEEEEEEEEEeEEEEeeEEEE
Q 047356 141 KLCEGFLPKFYQGHQNVTKLDVALTGQTQ-YGSTLMKAIQEQQ-QTGRIPLDLKVDAPVAIKLGKLKLRKVKIL 212 (241)
Q Consensus 141 ~Lg~~~vp~f~q~~r~tt~v~~~l~g~~~-~~~~~~~~l~~d~-~~G~V~l~v~v~~~vr~kvg~~~~~~~~v~ 212 (241)
.+|...+|+... +++.+. .+ ..+... .+.+...++.+++ .+..+.+.++.+ ...++|+++...+.++
T Consensus 2 ~f~~~~lP~~~~-~~~~~~-~~-~~~~l~i~d~~~f~~f~~~~~~~~~~~l~l~g~--~~~~~g~l~~~~i~~~ 70 (125)
T PF12505_consen 2 PFATLDLPQIKI-KGNGTI-SI-IDQTLTITDQDAFTQFVTALLFNEEVTLTLRGK--TDTHLGGLPFSGIPFD 70 (125)
T ss_pred ceEEEECCCEEe-cCCceE-EE-eeeeEEecCHHHHHHHHHHHHhCCcEEEEEEEe--eeEEEccEEEEEEeec
Confidence 467788999988 333222 11 222222 2344456777775 566777777766 4777888865544443
No 41
>PF09911 DUF2140: Uncharacterized protein conserved in bacteria (DUF2140); InterPro: IPR018672 This family of conserved hypothetical proteins has no known function.
Probab=52.06 E-value=21 Score=29.76 Aligned_cols=25 Identities=36% Similarity=0.618 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHhheeeeeeCCCC
Q 047356 62 ILVLLLIILAAIGGILYLVFQPKLP 86 (241)
Q Consensus 62 ~ll~lill~gi~~~il~lv~rPk~P 86 (241)
+++++.+++++++++++.+++|..|
T Consensus 7 F~~Lla~~l~~~~~~~~~~~~~~~~ 31 (187)
T PF09911_consen 7 FLILLALNLAFVIVVFFRLFQPSEP 31 (187)
T ss_pred HHHHHHHHHHHHhheeeEEEccCCC
Confidence 3344555677777788889999866
No 42
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=51.94 E-value=7.2 Score=39.78 Aligned_cols=28 Identities=14% Similarity=0.215 Sum_probs=16.5
Q ss_pred CCCceehhhHHHHHHHHHHHHHHHHHHh
Q 047356 48 SRSCFCKCFCWTVSILVLLLIILAAIGG 75 (241)
Q Consensus 48 rr~~ccr~~~~~~~~ll~lill~gi~~~ 75 (241)
++..|-|+++.++.+++++++++|++.+
T Consensus 133 ~~~~c~R~~l~~~L~~~~~~il~g~i~a 160 (806)
T PF05478_consen 133 KNDACRRGCLGILLLLLTLIILFGVICA 160 (806)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556666666666666666666654
No 43
>PHA03049 IMV membrane protein; Provisional
Probab=50.56 E-value=9.4 Score=26.39 Aligned_cols=21 Identities=29% Similarity=0.619 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHhheeeeee
Q 047356 62 ILVLLLIILAAIGGILYLVFQ 82 (241)
Q Consensus 62 ~ll~lill~gi~~~il~lv~r 82 (241)
-++++++-++++++|+|-+|+
T Consensus 4 d~~l~iICVaIi~lIvYgiYn 24 (68)
T PHA03049 4 DIILVIICVVIIGLIVYGIYN 24 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 445566778888899998886
No 44
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.34 E-value=7.3 Score=34.99 Aligned_cols=11 Identities=0% Similarity=-0.230 Sum_probs=4.6
Q ss_pred CCCceehhhHH
Q 047356 48 SRSCFCKCFCW 58 (241)
Q Consensus 48 rr~~ccr~~~~ 58 (241)
|+.-|||++|+
T Consensus 268 RK~k~i~ii~~ 278 (297)
T KOG0810|consen 268 RKWKIIIIIIL 278 (297)
T ss_pred hhceeeeehHH
Confidence 33344444443
No 45
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.91 E-value=19 Score=25.23 Aligned_cols=19 Identities=32% Similarity=0.835 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 047356 58 WTVSILVLLLIILAAIGGI 76 (241)
Q Consensus 58 ~~~~~ll~lill~gi~~~i 76 (241)
|+..+++++.+++|++++.
T Consensus 4 ~lail~ivl~ll~G~~~G~ 22 (71)
T COG3763 4 WLAILLIVLALLAGLIGGF 22 (71)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555666677788888774
No 46
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.89 E-value=7.6 Score=31.27 Aligned_cols=31 Identities=26% Similarity=0.436 Sum_probs=23.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhheeeeeeCC
Q 047356 54 KCFCWTVSILVLLLIILAAIGGILYLVFQPK 84 (241)
Q Consensus 54 r~~~~~~~~ll~lill~gi~~~il~lv~rPk 84 (241)
+.+.|+..++++++.+++.+++.+|....|.
T Consensus 4 k~~~~i~ii~viflai~~s~~~~~~~s~~P~ 34 (161)
T COG5353 4 KHLIIIIIILVIFLAIILSIALFFWKSMKPY 34 (161)
T ss_pred eEeeeehhHHHHHHHHHHHHHHHHhHhcCcc
Confidence 3556777777777778888888889888873
No 47
>PF09865 DUF2092: Predicted periplasmic protein (DUF2092); InterPro: IPR019207 This entry represents various hypothetical prokaryotic proteins of unknown function.
Probab=49.77 E-value=1.6e+02 Score=25.12 Aligned_cols=40 Identities=13% Similarity=0.143 Sum_probs=31.4
Q ss_pred CceeEEEEEEEEEEeCCCceeEEEECCC-cEEEEEeCceeee
Q 047356 103 DLTLYAQFDVKITANNPNKKIGIYYEKG-GKLSVWDERAKLC 143 (241)
Q Consensus 103 ~~~l~~~~~~~l~~~NPN~k~~i~Y~~~-~~v~v~Y~g~~Lg 143 (241)
+..+...-+.++.++=|| |+.+.+... .+..++|+|..+.
T Consensus 34 gqklq~~~~~~v~v~RPd-klr~~~~gd~~~~~~~yDGkt~T 74 (214)
T PF09865_consen 34 GQKLQFSSSGTVTVQRPD-KLRIDRRGDGADREFYYDGKTFT 74 (214)
T ss_pred CceEEEEEEEEEEEeCCC-eEEEEEEcCCcceEEEECCCEEE
Confidence 456778888999999999 699988542 2578899998764
No 48
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=49.75 E-value=15 Score=28.62 Aligned_cols=10 Identities=20% Similarity=0.557 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 047356 57 CWTVSILVLL 66 (241)
Q Consensus 57 ~~~~~~ll~l 66 (241)
.|+++++++|
T Consensus 4 l~~iii~~i~ 13 (130)
T PF12273_consen 4 LFAIIIVAIL 13 (130)
T ss_pred eHHHHHHHHH
Confidence 3443333333
No 49
>PF11807 DUF3328: Domain of unknown function (DUF3328); InterPro: IPR021765 This family of proteins are functionally uncharacterised. This family is only found in eukaryotes.
Probab=48.17 E-value=24 Score=28.78 Aligned_cols=7 Identities=14% Similarity=0.297 Sum_probs=2.7
Q ss_pred CCCCcee
Q 047356 47 KSRSCFC 53 (241)
Q Consensus 47 ~rr~~cc 53 (241)
+|++.+.
T Consensus 5 ~r~~~w~ 11 (217)
T PF11807_consen 5 RRRRRWR 11 (217)
T ss_pred CCCccHH
Confidence 3334433
No 50
>PRK05529 cell division protein FtsQ; Provisional
Probab=47.84 E-value=40 Score=29.43 Aligned_cols=51 Identities=10% Similarity=0.017 Sum_probs=31.0
Q ss_pred CCEEEEeeeEEeeeecCC------------C-ce--------------eEEEEEEEEEEeCCCceeEEEECCCcEEEEE
Q 047356 85 LPKYSVDSLRIRDLRLNL------------D-LT--------------LYAQFDVKITANNPNKKIGIYYEKGGKLSVW 136 (241)
Q Consensus 85 ~P~f~V~s~~v~~f~~~~------------~-~~--------------l~~~~~~~l~~~NPN~k~~i~Y~~~~~v~v~ 136 (241)
.|.|.|+++.|++-..-+ + +. +-.-=+++++-+.||. +.|.-.+-..+..+
T Consensus 58 Sp~~~v~~I~V~Gn~~vs~~eI~~~~~~~~g~~l~~vd~~~~~~~l~~~P~V~sa~V~r~~P~t-l~I~V~Er~pvA~~ 135 (255)
T PRK05529 58 SPLLALRSIEVAGNMRVKPQDIVAALRDQFGKPLPLVDPETVRKKLAAFPLIRSYSVESKPPGT-IVVRVVERVPLAFI 135 (255)
T ss_pred CCceEEEEEEEECCccCCHHHHHHHhcccCCCcceeECHHHHHHHHhcCCCEeEEEEEEeCCCE-EEEEEEEeeeEEEE
Confidence 489999999998754221 0 11 1122357788889994 77777653334444
No 51
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=47.67 E-value=11 Score=26.20 Aligned_cols=22 Identities=36% Similarity=0.649 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHhheeeeeeC
Q 047356 62 ILVLLLIILAAIGGILYLVFQP 83 (241)
Q Consensus 62 ~ll~lill~gi~~~il~lv~rP 83 (241)
-++++++-++++++|+|-+|+-
T Consensus 4 d~iLi~ICVaii~lIlY~iYnr 25 (68)
T PF05961_consen 4 DFILIIICVAIIGLILYGIYNR 25 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3455666788888899988863
No 52
>PRK00523 hypothetical protein; Provisional
Probab=47.38 E-value=19 Score=25.32 Aligned_cols=20 Identities=25% Similarity=0.175 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHhhe
Q 047356 58 WTVSILVLLLIILAAIGGIL 77 (241)
Q Consensus 58 ~~~~~ll~lill~gi~~~il 77 (241)
|+.+++.++++++|++++.+
T Consensus 5 ~l~I~l~i~~li~G~~~Gff 24 (72)
T PRK00523 5 GLALGLGIPLLIVGGIIGYF 24 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444445556777776654
No 53
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=47.24 E-value=12 Score=32.18 Aligned_cols=15 Identities=27% Similarity=0.410 Sum_probs=7.9
Q ss_pred ehhhHHHHHHHHHHH
Q 047356 53 CKCFCWTVSILVLLL 67 (241)
Q Consensus 53 cr~~~~~~~~ll~li 67 (241)
-+.|.++|+++++||
T Consensus 13 N~iLNiaI~IV~lLI 27 (217)
T PF07423_consen 13 NKILNIAIGIVSLLI 27 (217)
T ss_pred hhhHHHHHHHHHHHH
Confidence 456666555544433
No 54
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=47.17 E-value=15 Score=31.52 Aligned_cols=20 Identities=10% Similarity=0.258 Sum_probs=11.1
Q ss_pred HHHHHHhheeeeeeCCCCEE
Q 047356 69 ILAAIGGILYLVFQPKLPKY 88 (241)
Q Consensus 69 l~gi~~~il~lv~rPk~P~f 88 (241)
++|..++.+|-++|||....
T Consensus 171 l~gGGa~yYfK~~K~K~~~~ 190 (218)
T PF14283_consen 171 LIGGGAYYYFKFYKPKQEEK 190 (218)
T ss_pred HhhcceEEEEEEeccccccc
Confidence 34444444455778876544
No 55
>PF15145 DUF4577: Domain of unknown function (DUF4577)
Probab=47.09 E-value=20 Score=27.44 Aligned_cols=26 Identities=23% Similarity=0.631 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHhheeeeeeC
Q 047356 58 WTVSILVLLLIILAAIGGILYLVFQP 83 (241)
Q Consensus 58 ~~~~~ll~lill~gi~~~il~lv~rP 83 (241)
+++.++++|++-++++.+++||+++-
T Consensus 63 ffvglii~LivSLaLVsFvIFLiiQT 88 (128)
T PF15145_consen 63 FFVGLIIVLIVSLALVSFVIFLIIQT 88 (128)
T ss_pred hHHHHHHHHHHHHHHHHHHHHheeec
Confidence 34455566777788888888888864
No 56
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=46.50 E-value=12 Score=28.74 Aligned_cols=12 Identities=8% Similarity=0.534 Sum_probs=7.5
Q ss_pred HHhheeeeeeCC
Q 047356 73 IGGILYLVFQPK 84 (241)
Q Consensus 73 ~~~il~lv~rPk 84 (241)
+++++|+.+||.
T Consensus 12 ~~~i~yf~iRPQ 23 (113)
T PRK06531 12 MLGLIFFMQRQQ 23 (113)
T ss_pred HHHHHHheechH
Confidence 333456679995
No 57
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=45.05 E-value=23 Score=36.19 Aligned_cols=15 Identities=33% Similarity=0.622 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHhhee
Q 047356 64 VLLLIILAAIGGILY 78 (241)
Q Consensus 64 l~lill~gi~~~il~ 78 (241)
++++++++++++++.
T Consensus 145 ~L~~~~~~il~g~i~ 159 (806)
T PF05478_consen 145 LLLLLTLIILFGVIC 159 (806)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444455554443
No 58
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=43.27 E-value=19 Score=34.00 Aligned_cols=8 Identities=38% Similarity=1.298 Sum_probs=4.0
Q ss_pred hhHHHHHH
Q 047356 55 CFCWTVSI 62 (241)
Q Consensus 55 ~~~~~~~~ 62 (241)
|..|++.+
T Consensus 81 c~~~sLii 88 (418)
T cd07912 81 CLKWSLVI 88 (418)
T ss_pred HHHHHHHH
Confidence 55554443
No 59
>PF14927 Neurensin: Neurensin
Probab=43.03 E-value=38 Score=27.03 Aligned_cols=10 Identities=10% Similarity=0.325 Sum_probs=5.1
Q ss_pred HHHHHHHhhe
Q 047356 68 IILAAIGGIL 77 (241)
Q Consensus 68 ll~gi~~~il 77 (241)
+++|++++++
T Consensus 55 Ll~Gi~~l~v 64 (140)
T PF14927_consen 55 LLLGIVALTV 64 (140)
T ss_pred HHHHHHHHHh
Confidence 3555555444
No 60
>TIGR02115 potass_kdpF K+-transporting ATPase, KdpF subunit. This model describes a very small integral membrane peptide KdpF, a subunit of the K(+)-translocating Kdp complex. It is found upstream of the KdpA subunit (TIGR00680). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation.
Probab=42.75 E-value=7.3 Score=21.94 Aligned_cols=19 Identities=16% Similarity=0.473 Sum_probs=12.9
Q ss_pred HHHHHHHHHhheeeeeeCC
Q 047356 66 LLIILAAIGGILYLVFQPK 84 (241)
Q Consensus 66 lill~gi~~~il~lv~rPk 84 (241)
+++.+++++.++|..+||.
T Consensus 4 ~~l~~~L~~YL~~aLl~PE 22 (26)
T TIGR02115 4 LVLAVGLFIYLFYALLRPE 22 (26)
T ss_pred HHHHHHHHHHHHHHHhCHH
Confidence 4456666777777777885
No 61
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=42.48 E-value=18 Score=23.19 Aligned_cols=17 Identities=18% Similarity=0.552 Sum_probs=9.8
Q ss_pred HHHHHHHhheeeeeeCC
Q 047356 68 IILAAIGGILYLVFQPK 84 (241)
Q Consensus 68 ll~gi~~~il~lv~rPk 84 (241)
++.++.++++|.+++|+
T Consensus 17 ~~~~~F~gi~~w~~~~~ 33 (49)
T PF05545_consen 17 LFFVFFIGIVIWAYRPR 33 (49)
T ss_pred HHHHHHHHHHHHHHccc
Confidence 34444455555577886
No 62
>PF06129 Chordopox_G3: Chordopoxvirus G3 protein; InterPro: IPR010367 This family consists of several poxvirus specific G3 proteins. The function of this family is unknown.
Probab=42.43 E-value=40 Score=25.71 Aligned_cols=30 Identities=20% Similarity=0.355 Sum_probs=15.8
Q ss_pred EEEEEEEeCCCc----eeEEEECCCc-EEEEEeCc
Q 047356 110 FDVKITANNPNK----KIGIYYEKGG-KLSVWDER 139 (241)
Q Consensus 110 ~~~~l~~~NPN~----k~~i~Y~~~~-~v~v~Y~g 139 (241)
..-++-+.|||. .+.++|++.. .+.+.|+|
T Consensus 51 ~~~t~lF~~~~~~~~~~v~l~Yds~~~~Vtv~~~~ 85 (109)
T PF06129_consen 51 LLNTVLFLNPDKPVSSQVILYYDSRSGTVTVAYKN 85 (109)
T ss_pred ceeeEEecCCCcccccceEEEEccCCCeEEEEECC
Confidence 344566777773 3556665422 34455554
No 63
>PRK08455 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=42.00 E-value=44 Score=27.71 Aligned_cols=14 Identities=21% Similarity=0.107 Sum_probs=7.2
Q ss_pred EECCCcEEEEEeCce
Q 047356 126 YYEKGGKLSVWDERA 140 (241)
Q Consensus 126 ~Y~~~~~v~v~Y~g~ 140 (241)
+|-.. .+++.+++.
T Consensus 103 ryLkv-~i~Le~~~~ 116 (182)
T PRK08455 103 RYLKT-SISLELSNE 116 (182)
T ss_pred eEEEE-EEEEEECCH
Confidence 55554 355555543
No 64
>PF10907 DUF2749: Protein of unknown function (DUF2749); InterPro: IPR024475 This bacterial family of proteins represent the TrbJ and TrbK genes of the Ti plasmid conjugative transfer operon [].
Probab=41.68 E-value=28 Score=23.97 Aligned_cols=16 Identities=31% Similarity=0.688 Sum_probs=12.0
Q ss_pred HHHHHHhheeeeeeCC
Q 047356 69 ILAAIGGILYLVFQPK 84 (241)
Q Consensus 69 l~gi~~~il~lv~rPk 84 (241)
+.+.+..+.|++.+|+
T Consensus 13 vaa~a~~atwviVq~~ 28 (66)
T PF10907_consen 13 VAAAAGAATWVIVQPR 28 (66)
T ss_pred HHhhhceeEEEEECCC
Confidence 5555677778999987
No 65
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=41.67 E-value=21 Score=23.05 Aligned_cols=16 Identities=19% Similarity=0.407 Sum_probs=9.1
Q ss_pred HHHHHHhheeeeeeCC
Q 047356 69 ILAAIGGILYLVFQPK 84 (241)
Q Consensus 69 l~gi~~~il~lv~rPk 84 (241)
++++.++|++.+|+|+
T Consensus 19 ~~~~Figiv~wa~~p~ 34 (48)
T cd01324 19 LALFFLGVVVWAFRPG 34 (48)
T ss_pred HHHHHHHHHHHHhCCC
Confidence 4444455555577785
No 66
>PF08113 CoxIIa: Cytochrome c oxidase subunit IIa family; InterPro: IPR012538 This family consists of the cytochrome c oxidase subunit IIa family. The bax-type cytochrome c oxidase from Thermus thermophilus is known as a two subunit enzyme. From its crystal structure, it was discovered that an additional transmembrane helix, subunit IIa, spans the membrane. This subunit consists of 34 residues forming one helix across the membrane. The presence of this subunit seems to be important for the function of cytochrome c oxidases [].; PDB: 2QPD_C 3QJR_C 3EH5_C 3BVD_C 3S39_C 3QJU_C 3QJS_C 4EV3_C 3QJT_C 4FA7_C ....
Probab=41.08 E-value=18 Score=21.59 Aligned_cols=14 Identities=21% Similarity=0.486 Sum_probs=7.7
Q ss_pred HHHHHHHHHhheee
Q 047356 66 LLIILAAIGGILYL 79 (241)
Q Consensus 66 lill~gi~~~il~l 79 (241)
.+.+++++++++|+
T Consensus 11 vv~iLt~~ILvFWf 24 (34)
T PF08113_consen 11 VVMILTAFILVFWF 24 (34)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred eHHHHHHHHHHHHH
Confidence 33455666666663
No 67
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=41.06 E-value=14 Score=28.73 Aligned_cols=24 Identities=21% Similarity=0.202 Sum_probs=8.3
Q ss_pred HHHHHHhheeeeee-CCCCEEEEee
Q 047356 69 ILAAIGGILYLVFQ-PKLPKYSVDS 92 (241)
Q Consensus 69 l~gi~~~il~lv~r-Pk~P~f~V~s 92 (241)
++|++++|+|++-| =|++...++.
T Consensus 77 vIg~Illi~y~irR~~Kk~~~~~~p 101 (122)
T PF01102_consen 77 VIGIILLISYCIRRLRKKSSSDVQP 101 (122)
T ss_dssp HHHHHHHHHHHHHHHS---------
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCC
Confidence 44555666666654 3445555444
No 68
>PRK14759 potassium-transporting ATPase subunit F; Provisional
Probab=41.04 E-value=22 Score=20.55 Aligned_cols=19 Identities=16% Similarity=0.273 Sum_probs=13.0
Q ss_pred HHHHHHHHHhheeeeeeCC
Q 047356 66 LLIILAAIGGILYLVFQPK 84 (241)
Q Consensus 66 lill~gi~~~il~lv~rPk 84 (241)
.++.+|+.+.++|.++||.
T Consensus 9 ~~va~~L~vYL~~ALlrPE 27 (29)
T PRK14759 9 GAVSLGLLIYLTYALLRPE 27 (29)
T ss_pred HHHHHHHHHHHHHHHhCcc
Confidence 4456666777777778885
No 69
>PRK12785 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=40.79 E-value=72 Score=25.95 Aligned_cols=14 Identities=21% Similarity=0.041 Sum_probs=6.7
Q ss_pred EECCCcEEEEEeCce
Q 047356 126 YYEKGGKLSVWDERA 140 (241)
Q Consensus 126 ~Y~~~~~v~v~Y~g~ 140 (241)
+|-.. .+++.+++.
T Consensus 87 ryLkv-~i~L~~~~~ 100 (166)
T PRK12785 87 QYLKL-KVVLEVKDE 100 (166)
T ss_pred eEEEE-EEEEEECCH
Confidence 44444 355555543
No 70
>KOG4298 consensus CAP-binding protein complex interacting protein 2 [RNA processing and modification]
Probab=40.68 E-value=44 Score=28.14 Aligned_cols=32 Identities=31% Similarity=0.584 Sum_probs=26.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHhheeeeeeC-CCC
Q 047356 55 CFCWTVSILVLLLIILAAIGGILYLVFQP-KLP 86 (241)
Q Consensus 55 ~~~~~~~~ll~lill~gi~~~il~lv~rP-k~P 86 (241)
=+.|.|+.++.++++++=+++++|.-|-| +.|
T Consensus 147 elaW~FST~iGllLFL~Ei~llcwvKF~~v~~P 179 (245)
T KOG4298|consen 147 ELAWAFSTVIGLLLFLAEIVLLCWVKFLPVGYP 179 (245)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHheeeeecCCCc
Confidence 47799999999988888999999988877 344
No 71
>PF14992 TMCO5: TMCO5 family
Probab=38.33 E-value=19 Score=32.04 Aligned_cols=27 Identities=7% Similarity=0.202 Sum_probs=14.5
Q ss_pred CCCCceehhhHHHHHHHHHHHHHHHHH
Q 047356 47 KSRSCFCKCFCWTVSILVLLLIILAAI 73 (241)
Q Consensus 47 ~rr~~ccr~~~~~~~~ll~lill~gi~ 73 (241)
.++.+|-|.|+|++..+++++-++|-+
T Consensus 209 ~~~~~wkr~lr~l~f~vL~f~~LL~y~ 235 (280)
T PF14992_consen 209 NSPTFWKRALRLLFFMVLFFTRLLGYL 235 (280)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334567777777655444444444433
No 72
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=38.10 E-value=26 Score=21.44 Aligned_cols=10 Identities=10% Similarity=0.198 Sum_probs=4.9
Q ss_pred HHHhheeeee
Q 047356 72 AIGGILYLVF 81 (241)
Q Consensus 72 i~~~il~lv~ 81 (241)
+...|+|.++
T Consensus 23 imliif~f~l 32 (43)
T PF11395_consen 23 IMLIIFWFSL 32 (43)
T ss_pred HHHHHHHHHH
Confidence 4444556544
No 73
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=37.70 E-value=26 Score=28.34 Aligned_cols=21 Identities=14% Similarity=0.385 Sum_probs=14.5
Q ss_pred HHHHHHHhheeeeeeCCCCEE
Q 047356 68 IILAAIGGILYLVFQPKLPKY 88 (241)
Q Consensus 68 ll~gi~~~il~lv~rPk~P~f 88 (241)
++++++++++|+..|.|+=.|
T Consensus 62 ill~il~lvf~~c~r~kktdf 82 (154)
T PF04478_consen 62 ILLGILALVFIFCIRRKKTDF 82 (154)
T ss_pred HHHHHHHhheeEEEecccCcc
Confidence 345677777888889876443
No 74
>PF07787 DUF1625: Protein of unknown function (DUF1625); InterPro: IPR012430 Sequences making up this family are derived from hypothetical proteins expressed by both prokaryotic and eukaryotic species. The region in question is approximately 250 residues long.
Probab=37.46 E-value=38 Score=29.32 Aligned_cols=15 Identities=13% Similarity=0.394 Sum_probs=9.9
Q ss_pred HHHHHHhheeeeeeC
Q 047356 69 ILAAIGGILYLVFQP 83 (241)
Q Consensus 69 l~gi~~~il~lv~rP 83 (241)
+..+++++.|+.|||
T Consensus 234 lsl~~Ia~aW~~yRP 248 (248)
T PF07787_consen 234 LSLLTIALAWLFYRP 248 (248)
T ss_pred HHHHHHHHhheeeCc
Confidence 344555666888887
No 75
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=37.07 E-value=78 Score=23.23 Aligned_cols=61 Identities=11% Similarity=0.021 Sum_probs=34.1
Q ss_pred CceeEEEEEEEEEEeCCCceeEEEECC--CcEEEEEeCceeeee--ccCcceeecCCCeEEEEEEE
Q 047356 103 DLTLYAQFDVKITANNPNKKIGIYYEK--GGKLSVWDERAKLCE--GFLPKFYQGHQNVTKLDVAL 164 (241)
Q Consensus 103 ~~~l~~~~~~~l~~~NPN~k~~i~Y~~--~~~v~v~Y~g~~Lg~--~~vp~f~q~~r~tt~v~~~l 164 (241)
+..+.-.+++.+++.||.. ..++-=+ +....+.|.|..... -.......+++++..+.+.+
T Consensus 10 ~~~vG~d~~v~v~~~N~~~-~~l~~v~~~l~~~~v~ytG~~~~~~~~~~~~~~l~p~~~~~~~~~i 74 (107)
T PF00927_consen 10 DPVVGQDFTVSVSFTNPSS-EPLRNVSLNLCAFTVEYTGLTRDQFKKEKFEVTLKPGETKSVEVTI 74 (107)
T ss_dssp EEBTTSEEEEEEEEEE-SS-S-EECEEEEEEEEEEECTTTEEEEEEEEEEEEEE-TTEEEEEEEEE
T ss_pred CccCCCCEEEEEEEEeCCc-CccccceeEEEEEEEEECCcccccEeEEEcceeeCCCCEEEEEEEE
Confidence 3345678899999999974 2222100 123567888875432 23344555677776666655
No 76
>PF06092 DUF943: Enterobacterial putative membrane protein (DUF943); InterPro: IPR010351 This family consists of several hypothetical proteins from Escherichia coli, Yersinia pestis and Salmonella typhi.
Probab=36.42 E-value=25 Score=28.57 Aligned_cols=15 Identities=40% Similarity=0.656 Sum_probs=10.4
Q ss_pred HHHHHHhheeeeeeC
Q 047356 69 ILAAIGGILYLVFQP 83 (241)
Q Consensus 69 l~gi~~~il~lv~rP 83 (241)
++|+++.++|+.+||
T Consensus 14 l~~~~~y~~W~~~rp 28 (157)
T PF06092_consen 14 LLACILYFLWLTLRP 28 (157)
T ss_pred HHHHHHHhhhhccCC
Confidence 444444778888998
No 77
>PRK14758 hypothetical protein; Provisional
Probab=35.75 E-value=62 Score=18.18 Aligned_cols=21 Identities=29% Similarity=0.607 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHhheee
Q 047356 59 TVSILVLLLIILAAIGGILYL 79 (241)
Q Consensus 59 ~~~~ll~lill~gi~~~il~l 79 (241)
-|=++++++++-|+++.-+|+
T Consensus 6 rFEliLivlIlCalia~~fy~ 26 (27)
T PRK14758 6 RFEFILIILILCALIAARFYL 26 (27)
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 344555566677777776665
No 78
>KOG3927 consensus Na+/K+ ATPase, beta subunit [Inorganic ion transport and metabolism]
Probab=35.18 E-value=47 Score=29.94 Aligned_cols=33 Identities=30% Similarity=0.510 Sum_probs=17.9
Q ss_pred HHHHHHhhee---eeeeCCCCEEEEeeeEEeeeecCC
Q 047356 69 ILAAIGGILY---LVFQPKLPKYSVDSLRIRDLRLNL 102 (241)
Q Consensus 69 l~gi~~~il~---lv~rPk~P~f~V~s~~v~~f~~~~ 102 (241)
+++++++.+| .-+.|+.|++. ++..=.++.+.+
T Consensus 58 la~lf~~~~~~~~~tidp~~P~~~-~~~~~PGl~~~P 93 (300)
T KOG3927|consen 58 LAALFAGCMWFMLQTIDPKVPKYK-DSGANPGLSFRP 93 (300)
T ss_pred HHHHHHHHHHHHHHhcCCCCCccc-ccCCCCceeecC
Confidence 4444444444 44469999999 552223344443
No 79
>PRK05696 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=34.42 E-value=1e+02 Score=25.01 Aligned_cols=15 Identities=7% Similarity=-0.150 Sum_probs=8.1
Q ss_pred EEECCCcEEEEEeCce
Q 047356 125 IYYEKGGKLSVWDERA 140 (241)
Q Consensus 125 i~Y~~~~~v~v~Y~g~ 140 (241)
-+|-.. .+++.+.+.
T Consensus 86 ~ryLkv-~i~l~~~d~ 100 (170)
T PRK05696 86 DRLVQI-KVQLMVRGS 100 (170)
T ss_pred ceEEEE-EEEEEECCH
Confidence 455554 366666554
No 80
>PF13396 PLDc_N: Phospholipase_D-nuclease N-terminal
Probab=33.70 E-value=51 Score=20.44 Aligned_cols=24 Identities=42% Similarity=0.888 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhheeeeeeCC
Q 047356 56 FCWTVSILVLLLIILAAIGGILYLVFQPK 84 (241)
Q Consensus 56 ~~~~~~~ll~lill~gi~~~il~lv~rPk 84 (241)
..|++.+ +++-+++.++|++++.|
T Consensus 23 ~~W~~~i-----~~~P~iG~i~Yl~~gr~ 46 (46)
T PF13396_consen 23 ILWLIVI-----LFFPIIGPILYLIFGRK 46 (46)
T ss_pred hHHHHHH-----HHHHHHHHhheEEEeCC
Confidence 4575433 34566777788888753
No 81
>KOG2621 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion]
Probab=33.67 E-value=1.6e+02 Score=26.23 Aligned_cols=34 Identities=15% Similarity=0.207 Sum_probs=22.7
Q ss_pred EEEEeeeEEeeeecCC-------CceeEEEEEEEEEEeCCC
Q 047356 87 KYSVDSLRIRDLRLNL-------DLTLYAQFDVKITANNPN 120 (241)
Q Consensus 87 ~f~V~s~~v~~f~~~~-------~~~l~~~~~~~l~~~NPN 120 (241)
+|...++++..||+.+ +.+++.+-.+-.+++||-
T Consensus 91 t~~kVDLRt~sfnVPpqeIltkDsvtvsVdAvVyyri~dpi 131 (288)
T KOG2621|consen 91 TFRKVDLRTQSFNVPPQEILTKDSVTISVDAVVYYRISDPI 131 (288)
T ss_pred eeeeeeeeEEeecCCHHHHhcccceEEEeceEEEEEecCHH
Confidence 6788888999998875 124445455556666665
No 82
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=32.91 E-value=59 Score=30.28 Aligned_cols=31 Identities=29% Similarity=0.571 Sum_probs=14.1
Q ss_pred CCCCce--ehhhHHHHHHHHHHHHHHHHHHhhee
Q 047356 47 KSRSCF--CKCFCWTVSILVLLLIILAAIGGILY 78 (241)
Q Consensus 47 ~rr~~c--cr~~~~~~~~ll~lill~gi~~~il~ 78 (241)
+.|+|| -|.|. +|+-||=++||+|+++|.+|
T Consensus 17 ~~kgC~YYlryfF-lF~SLIQ~LIIlgLVLFmVY 49 (442)
T PF06637_consen 17 KGKGCWYYLRYFF-LFVSLIQFLIILGLVLFMVY 49 (442)
T ss_pred CCCChhHHHHHHH-HHHHHHHHHHHHHHHHHHhh
Confidence 455665 33332 23333334455565555444
No 83
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=32.82 E-value=30 Score=30.09 Aligned_cols=9 Identities=11% Similarity=0.637 Sum_probs=3.7
Q ss_pred hhHHHHHHH
Q 047356 55 CFCWTVSIL 63 (241)
Q Consensus 55 ~~~~~~~~l 63 (241)
.+||.+|++
T Consensus 251 i~c~gI~~i 259 (280)
T COG5074 251 IRCYGICFI 259 (280)
T ss_pred eehhhhHHH
Confidence 344444433
No 84
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=32.55 E-value=23 Score=31.85 Aligned_cols=19 Identities=26% Similarity=0.674 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHhheeeeee
Q 047356 64 VLLLIILAAIGGILYLVFQ 82 (241)
Q Consensus 64 l~lill~gi~~~il~lv~r 82 (241)
+++++++.++.+|+||++|
T Consensus 262 iiaIliIVLIMvIIYLILR 280 (299)
T PF02009_consen 262 IIAILIIVLIMVIIYLILR 280 (299)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344555567777788775
No 85
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.50 E-value=46 Score=29.86 Aligned_cols=6 Identities=0% Similarity=-0.424 Sum_probs=2.3
Q ss_pred Cceehh
Q 047356 50 SCFCKC 55 (241)
Q Consensus 50 ~~ccr~ 55 (241)
.|||-|
T Consensus 281 k~~~i~ 286 (305)
T KOG0809|consen 281 KMKVIL 286 (305)
T ss_pred ceEehH
Confidence 344333
No 86
>PF06692 MNSV_P7B: Melon necrotic spot virus P7B protein; InterPro: IPR009575 This family consists of several Melon necrotic spot virus (MNSV) P7B proteins. The function of this family is unknown.
Probab=30.85 E-value=24 Score=23.58 Aligned_cols=10 Identities=10% Similarity=0.089 Sum_probs=6.9
Q ss_pred eeeeCCCCEE
Q 047356 79 LVFQPKLPKY 88 (241)
Q Consensus 79 lv~rPk~P~f 88 (241)
..|-|+.|.+
T Consensus 30 ~~l~qq~~~y 39 (61)
T PF06692_consen 30 TSLGQQGNTY 39 (61)
T ss_pred hhhccCCCee
Confidence 3567887776
No 87
>PF12202 OSR1_C: Oxidative-stress-responsive kinase 1 C terminal; InterPro: IPR024678 Oxidative-stress-responsive kinase 1 (OSR1) is involved in the signalling cascade which activates Na/K/2Cl co-transporter during osmotic stress. This entry represents the CCT domain found in OSR1, STE20/SPS1-related kinase and in WNK activators []. This domain is found in eukaryotes, and is approximately 40 amino acids in length. There is a single completely conserved residue F that may be functionally important. ; PDB: 2V3S_A 2LRU_A.
Probab=30.79 E-value=49 Score=20.37 Aligned_cols=28 Identities=11% Similarity=0.311 Sum_probs=16.8
Q ss_pred EEEEEEEeCCCceeEEEECCCcEEEEEeC
Q 047356 110 FDVKITANNPNKKIGIYYEKGGKLSVWDE 138 (241)
Q Consensus 110 ~~~~l~~~NPN~k~~i~Y~~~~~v~v~Y~ 138 (241)
+++.|+++||.+.-+ .|.+.+.+...|+
T Consensus 1 i~l~Lrv~d~kK~~~-k~ken~aI~F~F~ 28 (38)
T PF12202_consen 1 INLRLRVRDPKKRKG-KHKENEAIEFEFD 28 (38)
T ss_dssp EEEEEEEC-TTSSSS-S--TCEEEEEEEE
T ss_pred CcEEEEEeccccccC-ccccCccEEEEEe
Confidence 468899999996444 6666555555553
No 88
>COG2991 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.52 E-value=61 Score=22.88 Aligned_cols=20 Identities=20% Similarity=0.391 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHhhe
Q 047356 58 WTVSILVLLLIILAAIGGIL 77 (241)
Q Consensus 58 ~~~~~ll~lill~gi~~~il 77 (241)
|++.+.++|++++|..++.+
T Consensus 4 ~lltFg~Fllvi~gMsiG~I 23 (77)
T COG2991 4 FLLTFGIFLLVIAGMSIGYI 23 (77)
T ss_pred HHHHHHHHHHHHHHHhHhhh
Confidence 55555555666777766643
No 89
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=30.46 E-value=41 Score=24.93 Aligned_cols=9 Identities=44% Similarity=0.460 Sum_probs=3.7
Q ss_pred HHHHHHHhh
Q 047356 68 IILAAIGGI 76 (241)
Q Consensus 68 ll~gi~~~i 76 (241)
++++++++|
T Consensus 11 l~LA~lLli 19 (95)
T PF07172_consen 11 LLLAALLLI 19 (95)
T ss_pred HHHHHHHHH
Confidence 334444444
No 90
>COG1589 FtsQ Cell division septal protein [Cell envelope biogenesis, outer membrane]
Probab=29.93 E-value=63 Score=28.30 Aligned_cols=29 Identities=14% Similarity=0.395 Sum_probs=22.1
Q ss_pred HHHHHHhheeeeeeCCCCEEEEeeeEEee
Q 047356 69 ILAAIGGILYLVFQPKLPKYSVDSLRIRD 97 (241)
Q Consensus 69 l~gi~~~il~lv~rPk~P~f~V~s~~v~~ 97 (241)
++++.++++|...-++.|.|.+..+.|++
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~i~~v~v~G 69 (269)
T COG1589 41 LLLLVLVVLWVLILLSLPYFPIRKVSVSG 69 (269)
T ss_pred HHHHHHHHHheehhhhcCCccceEEEEec
Confidence 44455566677778888999999999986
No 91
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=29.85 E-value=54 Score=28.38 Aligned_cols=7 Identities=29% Similarity=1.298 Sum_probs=3.8
Q ss_pred hhHHHHH
Q 047356 55 CFCWTVS 61 (241)
Q Consensus 55 ~~~~~~~ 61 (241)
|+.|++.
T Consensus 228 ~~~~~~i 234 (251)
T PF09753_consen 228 CWTWLMI 234 (251)
T ss_pred HHHHHHH
Confidence 5666543
No 92
>PF04573 SPC22: Signal peptidase subunit; InterPro: IPR007653 Translocation of polypeptide chains across the endoplasmic reticulum membrane is triggered by signal sequences. During translocation of the nascent chain through the membrane, the signal sequence of most secretory and membrane proteins is cleaved off. Cleavage occurs by the signal peptidase complex (SPC), which consists of four subunits in yeast and five in mammals. This family is is described as similar to microsomal signal peptidase 23 kDa subunit. Found in eukaryotes [, ].; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=29.66 E-value=2e+02 Score=23.75 Aligned_cols=10 Identities=40% Similarity=0.245 Sum_probs=5.2
Q ss_pred CCCceeEEEE
Q 047356 118 NPNKKIGIYY 127 (241)
Q Consensus 118 NPN~k~~i~Y 127 (241)
|=|.|.-+-|
T Consensus 79 nWNtKq~Fvy 88 (175)
T PF04573_consen 79 NWNTKQLFVY 88 (175)
T ss_pred eeeeeEEEEE
Confidence 5565544444
No 93
>PF12505 DUF3712: Protein of unknown function (DUF3712); InterPro: IPR022185 This domain family is found in eukaryotes, and is approximately 130 amino acids in length.
Probab=29.43 E-value=1.2e+02 Score=23.15 Aligned_cols=24 Identities=17% Similarity=0.156 Sum_probs=17.1
Q ss_pred eEEEEEEEEEEeCCCceeEEEECCC
Q 047356 106 LYAQFDVKITANNPNKKIGIYYEKG 130 (241)
Q Consensus 106 l~~~~~~~l~~~NPN~k~~i~Y~~~ 130 (241)
-..++..++.+.||.. +++...+.
T Consensus 98 ~g~~~~~~~~l~NPS~-~ti~lG~v 121 (125)
T PF12505_consen 98 DGINLNATVTLPNPSP-LTIDLGNV 121 (125)
T ss_pred CcEEEEEEEEEcCCCe-EEEEeccE
Confidence 3566788888889984 77766553
No 94
>PF03929 PepSY_TM: PepSY-associated TM helix; InterPro: IPR005625 This domain represents a conserved transmembrane (TM) helix that is found in bacterial proteins. Coil residues are significantly more conserved than other residues and are frequently found within channels and transporters, where they introduce the flexibility and polarity required for transport across the membrane []. This TM helix associates with PepSY (peptidase (M4) and YpeB of subtilis). PepSY is a repeated region first identified in Thermoanaerobacter tengcongensis. The PepSY domain functions in the control of M4 peptidases through their propeptide and in the germination of spores. It may also play a part in regulating protease activity [].
Probab=29.38 E-value=82 Score=17.72 Aligned_cols=12 Identities=33% Similarity=0.664 Sum_probs=5.5
Q ss_pred HHHHHHHHHhhe
Q 047356 66 LLIILAAIGGIL 77 (241)
Q Consensus 66 lill~gi~~~il 77 (241)
+.+++++.++++
T Consensus 15 ~~lv~~iTGl~l 26 (27)
T PF03929_consen 15 FMLVFAITGLIL 26 (27)
T ss_pred HHHHHHHHHHHh
Confidence 334444555443
No 95
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=28.74 E-value=89 Score=19.03 Aligned_cols=15 Identities=27% Similarity=0.709 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHH
Q 047356 58 WTVSILVLLLIILAA 72 (241)
Q Consensus 58 ~~~~~ll~lill~gi 72 (241)
|++..+..+++++.+
T Consensus 16 Wi~F~l~mi~vFi~l 30 (38)
T PF09125_consen 16 WIAFALAMILVFIAL 30 (38)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 765554444333333
No 96
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=28.66 E-value=39 Score=22.95 Aligned_cols=13 Identities=15% Similarity=0.605 Sum_probs=8.2
Q ss_pred HHHhheeeeeeCC
Q 047356 72 AIGGILYLVFQPK 84 (241)
Q Consensus 72 i~~~il~lv~rPk 84 (241)
..++++|.+|||+
T Consensus 21 ~fiavi~~ayr~~ 33 (60)
T COG4736 21 FFIAVIYFAYRPG 33 (60)
T ss_pred HHHHHHHHHhccc
Confidence 3444556788885
No 97
>PF15012 DUF4519: Domain of unknown function (DUF4519)
Probab=28.23 E-value=61 Score=21.68 Aligned_cols=15 Identities=27% Similarity=0.410 Sum_probs=9.0
Q ss_pred HHHHHhheeeeeeCC
Q 047356 70 LAAIGGILYLVFQPK 84 (241)
Q Consensus 70 ~gi~~~il~lv~rPk 84 (241)
+.++++++|+.-||+
T Consensus 42 ~~~Ivv~vy~kTRP~ 56 (56)
T PF15012_consen 42 FLFIVVFVYLKTRPR 56 (56)
T ss_pred HHHHhheeEEeccCC
Confidence 334455667777774
No 98
>PF04790 Sarcoglycan_1: Sarcoglycan complex subunit protein; InterPro: IPR006875 The dystrophin glycoprotein complex (DGC) is a membrane-spanning complex that links the interior cytoskeleton to the extracellular matrix in muscle. The sarcoglycan complex is a subcomplex within the DGC and is composed of several muscle-specific, transmembrane proteins (alpha-, beta-, gamma-, delta- and zeta-sarcoglycan). The sarcoglycans are asparagine-linked glycosylated proteins with single transmembrane domains. This family contains beta, gamma and delta members [, ].; GO: 0007010 cytoskeleton organization, 0016012 sarcoglycan complex, 0016021 integral to membrane
Probab=28.11 E-value=4.2e+02 Score=23.35 Aligned_cols=18 Identities=22% Similarity=0.316 Sum_probs=13.0
Q ss_pred eeEEEEEEEEEEeCCCce
Q 047356 105 TLYAQFDVKITANNPNKK 122 (241)
Q Consensus 105 ~l~~~~~~~l~~~NPN~k 122 (241)
.+..+=++++.++|.|..
T Consensus 83 ~i~s~~~v~~~~r~~~g~ 100 (264)
T PF04790_consen 83 VIQSSRNVTLNARNENGS 100 (264)
T ss_pred EEEecCceEEEEecCCCc
Confidence 445555688888998876
No 99
>PHA02902 putative IMV membrane protein; Provisional
Probab=28.08 E-value=27 Score=24.01 Aligned_cols=19 Identities=21% Similarity=0.523 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHhheeeeee
Q 047356 64 VLLLIILAAIGGILYLVFQ 82 (241)
Q Consensus 64 l~lill~gi~~~il~lv~r 82 (241)
+++++.+.|+.+++|.+||
T Consensus 7 vi~~v~v~Ivclliya~Yr 25 (70)
T PHA02902 7 VILAVIVIIFCLLIYAAYK 25 (70)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444556666777777776
No 100
>COG1463 Ttg2C ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=28.07 E-value=1.2e+02 Score=27.85 Aligned_cols=39 Identities=8% Similarity=0.007 Sum_probs=19.7
Q ss_pred EEEeCceeeeeccCcceeecCCCeEEEEEEEEEeeccChh
Q 047356 134 SVWDERAKLCEGFLPKFYQGHQNVTKLDVALTGQTQYGST 173 (241)
Q Consensus 134 ~v~Y~g~~Lg~~~vp~f~q~~r~tt~v~~~l~g~~~~~~~ 173 (241)
.|.|+|..+|+..-=.+.. ......+.+.+....+++.+
T Consensus 58 ~V~~~GV~VG~V~~I~~~~-~~~~~~v~~~id~~~~Ip~~ 96 (359)
T COG1463 58 PVRYRGVKVGKVASISLDP-KPNGARVTLEIDSDYPIPAD 96 (359)
T ss_pred ceEEcCEEeEEEEEEEecC-CCCceEEEEEecCCcccCCC
Confidence 5889998888654111111 23334444554433444443
No 101
>PTZ00201 amastin surface glycoprotein; Provisional
Probab=27.67 E-value=67 Score=27.03 Aligned_cols=9 Identities=22% Similarity=0.637 Sum_probs=3.8
Q ss_pred eehhhHHHH
Q 047356 52 FCKCFCWTV 60 (241)
Q Consensus 52 ccr~~~~~~ 60 (241)
||.|+.|++
T Consensus 101 cc~~lr~vc 109 (192)
T PTZ00201 101 GCTIHRWVC 109 (192)
T ss_pred ccchHHHHH
Confidence 333444443
No 102
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=27.26 E-value=70 Score=25.86 Aligned_cols=16 Identities=13% Similarity=0.081 Sum_probs=8.1
Q ss_pred HHHHHHHhheeeeeeC
Q 047356 68 IILAAIGGILYLVFQP 83 (241)
Q Consensus 68 ll~gi~~~il~lv~rP 83 (241)
+++...++.+|-+-+.
T Consensus 21 lLl~cgiGcvwhwkhr 36 (158)
T PF11770_consen 21 LLLLCGIGCVWHWKHR 36 (158)
T ss_pred HHHHHhcceEEEeecc
Confidence 3444445555665553
No 103
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=27.22 E-value=95 Score=19.80 Aligned_cols=11 Identities=18% Similarity=0.440 Sum_probs=5.5
Q ss_pred hHHHHHHHHHH
Q 047356 56 FCWTVSILVLL 66 (241)
Q Consensus 56 ~~~~~~~ll~l 66 (241)
+.|+|+++++|
T Consensus 5 lt~iFsvvIil 15 (49)
T PF11044_consen 5 LTTIFSVVIIL 15 (49)
T ss_pred HHHHHHHHHHH
Confidence 34555554443
No 104
>PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.; GO: 0017003 protein-heme linkage, 0017004 cytochrome complex assembly, 0005886 plasma membrane; PDB: 1SR3_A 2KCT_A 1J6Q_A 1LM0_A.
Probab=27.21 E-value=80 Score=24.58 Aligned_cols=8 Identities=13% Similarity=0.057 Sum_probs=4.3
Q ss_pred EEEEEeCc
Q 047356 132 KLSVWDER 139 (241)
Q Consensus 132 ~v~v~Y~g 139 (241)
++.|.|.|
T Consensus 83 ~i~V~Y~G 90 (131)
T PF03100_consen 83 EIPVVYTG 90 (131)
T ss_dssp EEEEEEES
T ss_pred EEEEEECC
Confidence 35555554
No 105
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=26.67 E-value=84 Score=23.38 Aligned_cols=8 Identities=38% Similarity=0.613 Sum_probs=3.5
Q ss_pred Hhheeeee
Q 047356 74 GGILYLVF 81 (241)
Q Consensus 74 ~~il~lv~ 81 (241)
..|.|+++
T Consensus 79 y~IyYFVI 86 (101)
T PF06024_consen 79 YAIYYFVI 86 (101)
T ss_pred hhheEEEE
Confidence 33445444
No 106
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.53 E-value=47 Score=30.55 Aligned_cols=27 Identities=15% Similarity=0.223 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhheeeeee
Q 047356 56 FCWTVSILVLLLIILAAIGGILYLVFQ 82 (241)
Q Consensus 56 ~~~~~~~ll~lill~gi~~~il~lv~r 82 (241)
..|+++++|+|+|+=.|+.+|.|+++.
T Consensus 225 ~~gfl~~IlvLaIvRlILF~I~~il~~ 251 (372)
T KOG2927|consen 225 AGGFLAFILVLAIVRLILFGITWILTG 251 (372)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 345555566666666677777777776
No 107
>PF01621 Fusion_gly_K: Cell fusion glycoprotein K; InterPro: IPR002567 Human herpesvirus 1 (HHV-1) (Human herpes simplex virus 1) glycoprotein K (gK) plays an essential role in viral replication and cell fusion. gK is a very hydrophobic membrane protein that contains a signal sequence and several hydrophobic regions. gK contains three transmembrane domains (amino acids 125-139, 226-239, and 311-325) and another hydrophobic domain (amino acids 241-265), which is relatively less hydrophobic and much longer compared with the transmembrane sequences located in the extracellular loop. The domains may interact with each other to form a complex tertiary structure that is critical for the biological function of gK [].; GO: 0007155 cell adhesion, 0016020 membrane
Probab=26.31 E-value=62 Score=29.62 Aligned_cols=18 Identities=17% Similarity=0.204 Sum_probs=11.9
Q ss_pred CCCceehhhHHHHHHHHH
Q 047356 48 SRSCFCKCFCWTVSILVL 65 (241)
Q Consensus 48 rr~~ccr~~~~~~~~ll~ 65 (241)
.++-|..||.-+++.+++
T Consensus 292 ~~~vCt~CCatilSgl~v 309 (337)
T PF01621_consen 292 LHGVCTNCCATILSGLAV 309 (337)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 345677777777777666
No 108
>PF12321 DUF3634: Protein of unknown function (DUF3634); InterPro: IPR022090 This family of proteins is found in bacteria. Proteins in this family are typically between 103 and 114 amino acids in length.
Probab=26.28 E-value=37 Score=25.86 Aligned_cols=16 Identities=38% Similarity=0.810 Sum_probs=8.8
Q ss_pred hheeeeeeCC--CCEEEE
Q 047356 75 GILYLVFQPK--LPKYSV 90 (241)
Q Consensus 75 ~il~lv~rPk--~P~f~V 90 (241)
+|+||++-=+ .|.|.|
T Consensus 11 li~~Lv~~~r~~~~vf~i 28 (108)
T PF12321_consen 11 LIFWLVFVDRRGLPVFEI 28 (108)
T ss_pred HHHHHHHccccCceEEEE
Confidence 6667666433 366543
No 109
>PHA03292 envelope glycoprotein I; Provisional
Probab=26.28 E-value=1e+02 Score=28.72 Aligned_cols=7 Identities=29% Similarity=0.672 Sum_probs=3.2
Q ss_pred CCCCCCC
Q 047356 44 PPKKSRS 50 (241)
Q Consensus 44 ~~k~rr~ 50 (241)
.+++|++
T Consensus 310 ~~~~~~k 316 (413)
T PHA03292 310 SPKRRNK 316 (413)
T ss_pred Ccchhcc
Confidence 3444444
No 110
>PF04415 DUF515: Protein of unknown function (DUF515) ; InterPro: IPR007509 This is a family of hypothetical archaeal proteins.
Probab=26.06 E-value=66 Score=30.32 Aligned_cols=6 Identities=50% Similarity=0.822 Sum_probs=3.5
Q ss_pred eeeeeC
Q 047356 78 YLVFQP 83 (241)
Q Consensus 78 ~lv~rP 83 (241)
|+.++|
T Consensus 53 ~~~~~~ 58 (416)
T PF04415_consen 53 FLQNQP 58 (416)
T ss_pred HhhhhH
Confidence 456665
No 111
>PHA03278 envelope glycoprotein K; Provisional
Probab=25.97 E-value=73 Score=29.25 Aligned_cols=16 Identities=13% Similarity=0.233 Sum_probs=10.3
Q ss_pred CceehhhHHHHHHHHH
Q 047356 50 SCFCKCFCWTVSILVL 65 (241)
Q Consensus 50 ~~ccr~~~~~~~~ll~ 65 (241)
+-|..||.-+++.+++
T Consensus 299 gvc~~CCatilSgi~v 314 (347)
T PHA03278 299 GVCSNCCATLLSGIFV 314 (347)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4566666666666666
No 112
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.90 E-value=26 Score=31.49 Aligned_cols=22 Identities=9% Similarity=0.307 Sum_probs=12.9
Q ss_pred CCCceehhhHHHHHHHHHHHHH
Q 047356 48 SRSCFCKCFCWTVSILVLLLII 69 (241)
Q Consensus 48 rr~~ccr~~~~~~~~ll~lill 69 (241)
++.++-.|+||+++++++++++
T Consensus 265 kkaRK~k~i~ii~~iii~~v~v 286 (297)
T KOG0810|consen 265 KKARKWKIIIIIILIIIIVVLV 286 (297)
T ss_pred HHhhhceeeeehHHHHHHHHHh
Confidence 3446666777766665554443
No 113
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=25.89 E-value=36 Score=24.36 Aligned_cols=8 Identities=0% Similarity=0.177 Sum_probs=3.3
Q ss_pred ceehhhHH
Q 047356 51 CFCKCFCW 58 (241)
Q Consensus 51 ~ccr~~~~ 58 (241)
.|++-+-+
T Consensus 61 ~~~~~~k~ 68 (89)
T PF00957_consen 61 MWWRNYKL 68 (89)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34444333
No 114
>PF04834 Adeno_E3_14_5: Early E3 14.5 kDa protein; InterPro: IPR008131 The E3B 14.5 kDa was first identified in human adenovirus type 5. It is an integral membrane protein oriented with its C terminus in the cytoplasm. It functions to down-regulate the epidermal growth factor receptor and prevent tumour necrosis factor cytolysis. It achieves this through the interaction with E3 10.4 kDa protein [, ]. ; GO: 0009966 regulation of signal transduction, 0016021 integral to membrane
Probab=25.40 E-value=83 Score=23.49 Aligned_cols=26 Identities=19% Similarity=0.350 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhheeeee
Q 047356 56 FCWTVSILVLLLIILAAIGGILYLVF 81 (241)
Q Consensus 56 ~~~~~~~ll~lill~gi~~~il~lv~ 81 (241)
-.|+.++.+++++..+++++.+|-.|
T Consensus 22 ~~Wl~~i~~~~v~~~t~~~l~iYp~f 47 (97)
T PF04834_consen 22 NYWLYAIGIVLVFCSTFFSLAIYPCF 47 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhee
Confidence 46998888888888888888877444
No 115
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=25.26 E-value=40 Score=26.27 Aligned_cols=16 Identities=25% Similarity=0.492 Sum_probs=7.3
Q ss_pred HHHHHHHHHhheeeee
Q 047356 66 LLIILAAIGGILYLVF 81 (241)
Q Consensus 66 lill~gi~~~il~lv~ 81 (241)
+.+++|+++.|+.++|
T Consensus 71 ~gv~aGvIg~Illi~y 86 (122)
T PF01102_consen 71 FGVMAGVIGIILLISY 86 (122)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344555444444443
No 116
>smart00831 Cation_ATPase_N Cation transporter/ATPase, N-terminus. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+, Na+, Ca2+, Na+/K+, and H+/K+. In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases PUBMED:12480547, PUBMED:12529322.
Probab=25.12 E-value=1.1e+02 Score=20.06 Aligned_cols=6 Identities=17% Similarity=0.207 Sum_probs=2.2
Q ss_pred HHHHHH
Q 047356 69 ILAAIG 74 (241)
Q Consensus 69 l~gi~~ 74 (241)
+++++.
T Consensus 54 ~~a~is 59 (64)
T smart00831 54 AAAVLS 59 (64)
T ss_pred HHHHHH
Confidence 333333
No 117
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=25.00 E-value=38 Score=23.91 Aligned_cols=13 Identities=31% Similarity=0.304 Sum_probs=5.9
Q ss_pred HHHHHHHhheeee
Q 047356 68 IILAAIGGILYLV 80 (241)
Q Consensus 68 ll~gi~~~il~lv 80 (241)
+++|+++++.+.+
T Consensus 66 ~~~Gl~lgi~~~~ 78 (82)
T PF13807_consen 66 LFLGLILGIGLAF 78 (82)
T ss_pred HHHHHHHHHHHHH
Confidence 3445554444433
No 118
>PF14828 Amnionless: Amnionless
Probab=24.79 E-value=40 Score=31.97 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=12.8
Q ss_pred HHHHHHHHHhheeeeeeCCCCEE
Q 047356 66 LLIILAAIGGILYLVFQPKLPKY 88 (241)
Q Consensus 66 lill~gi~~~il~lv~rPk~P~f 88 (241)
.+++++++++++|+.+.|+.|.+
T Consensus 347 ~Lllv~ll~~~~ll~~~~~~~~l 369 (437)
T PF14828_consen 347 CLLLVALLFGVILLYRLPRNPSL 369 (437)
T ss_pred HHHHHHHHHHhheEEeccccccc
Confidence 33455555555566665666654
No 119
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=24.42 E-value=39 Score=25.81 Aligned_cols=12 Identities=25% Similarity=0.797 Sum_probs=7.0
Q ss_pred HHhheeeeeeCC
Q 047356 73 IGGILYLVFQPK 84 (241)
Q Consensus 73 ~~~il~lv~rPk 84 (241)
+++++|+.+||.
T Consensus 14 ~~i~yF~~iRPQ 25 (109)
T PRK05886 14 MGGFMYFASRRQ 25 (109)
T ss_pred HHHHHHHHccHH
Confidence 333445678884
No 120
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=24.23 E-value=1.1e+02 Score=28.93 Aligned_cols=14 Identities=21% Similarity=0.398 Sum_probs=6.3
Q ss_pred hHHHHHHHHHHHHH
Q 047356 56 FCWTVSILVLLLII 69 (241)
Q Consensus 56 ~~~~~~~ll~lill 69 (241)
++|....++++.++
T Consensus 79 ~~c~~~sLiiltL~ 92 (418)
T cd07912 79 ICCLKWSLVIATLL 92 (418)
T ss_pred ccHHHHHHHHHHHH
Confidence 44444544444333
No 121
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=24.14 E-value=67 Score=19.97 Aligned_cols=9 Identities=22% Similarity=0.859 Sum_probs=4.6
Q ss_pred Hhheeeeee
Q 047356 74 GGILYLVFQ 82 (241)
Q Consensus 74 ~~il~lv~r 82 (241)
+++||+++|
T Consensus 29 ~~~l~~~~r 37 (40)
T PF08693_consen 29 GAFLFFWYR 37 (40)
T ss_pred HHHhheEEe
Confidence 344455555
No 122
>PRK13150 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=23.84 E-value=2.3e+02 Score=23.15 Aligned_cols=13 Identities=31% Similarity=0.258 Sum_probs=7.9
Q ss_pred ccChhHHHHHHHH
Q 047356 169 QYGSTLMKAIQEQ 181 (241)
Q Consensus 169 ~~~~~~~~~l~~d 181 (241)
..+.+++++|+++
T Consensus 134 YmPpEv~~al~~~ 146 (159)
T PRK13150 134 YTPPEVEKAMQEN 146 (159)
T ss_pred CCCHHHHHHHHHh
Confidence 4567776666643
No 123
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=23.65 E-value=65 Score=24.41 Aligned_cols=9 Identities=11% Similarity=0.578 Sum_probs=3.8
Q ss_pred eeEEEEEEE
Q 047356 105 TLYAQFDVK 113 (241)
Q Consensus 105 ~l~~~~~~~ 113 (241)
.+.+|++..
T Consensus 47 p~YgNL~~~ 55 (107)
T PF15330_consen 47 PCYGNLELQ 55 (107)
T ss_pred ccccccccc
Confidence 344444443
No 124
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=23.55 E-value=80 Score=27.74 Aligned_cols=24 Identities=17% Similarity=0.264 Sum_probs=12.7
Q ss_pred ehhhHHHHHHHHHHHHHHHHHHhh
Q 047356 53 CKCFCWTVSILVLLLIILAAIGGI 76 (241)
Q Consensus 53 cr~~~~~~~~ll~lill~gi~~~i 76 (241)
-|++++++..++++++.+|++++.
T Consensus 196 kR~i~f~llgllfliiaigltvGT 219 (256)
T PF09788_consen 196 KRAIIFFLLGLLFLIIAIGLTVGT 219 (256)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhh
Confidence 345555555555555555555443
No 125
>PF01690 PLRV_ORF5: Potato leaf roll virus readthrough protein; InterPro: IPR002929 This family consists mainly of the Potato leafroll virus (PLrV) read through protein otherwise known as the minor capsid protein. This is generated via a readthrough of open reading frame 3, the coat protein, allowing transcription of open reading frame 5 to give an extended coat protein with a large C-terminal addition or read through domain []. The read through protein is essential for the circulative aphid transmission of PLrV [] and Beet western yellows virus []. The N-terminal region of the luteovirus readthrough domain determines virus binding to Buchnera GroEL and is essential for virus persistence in the aphid [].; GO: 0019028 viral capsid
Probab=23.03 E-value=82 Score=30.10 Aligned_cols=11 Identities=27% Similarity=0.561 Sum_probs=7.0
Q ss_pred CCeEEEEEEEE
Q 047356 184 TGRIPLDLKVD 194 (241)
Q Consensus 184 ~G~V~l~v~v~ 194 (241)
.+.+.|.|+.+
T Consensus 180 D~~~SFhl~~~ 190 (465)
T PF01690_consen 180 DGTISFHLEAT 190 (465)
T ss_pred eeeEEEEEEec
Confidence 45666766666
No 126
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=22.86 E-value=58 Score=29.13 Aligned_cols=22 Identities=27% Similarity=0.575 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHhheeeee
Q 047356 58 WTVSILVLLLIILAAIGGILYLVF 81 (241)
Q Consensus 58 ~~~~~ll~lill~gi~~~il~lv~ 81 (241)
|-+++|++|++. +++.|+|+|+
T Consensus 261 cgiaalvllil~--vvliiLYiWl 282 (295)
T TIGR01478 261 YGIAALVLIILT--VVLIILYIWL 282 (295)
T ss_pred cHHHHHHHHHHH--HHHHHHHHHH
Confidence 445555554444 4444445444
No 127
>PF00287 Na_K-ATPase: Sodium / potassium ATPase beta chain; InterPro: IPR000402 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the beta subunit found in the P-type cation exchange ATPases located in the plasma membranes of animal cells. These P-ATPases include both H+/K+-ATPases (3.6.3.10 from EC) and Na+/K+-ATPases (3.6.3.9 from EC), which belong to the IIC subfamily of ATPases [, ]. These ATPases catalyse the hydrolysis of ATP coupled with the exchange of cations, pumping one cation out of the cell (H+ or Na+) in exchange for K+. These ATPases contain an alpha subunit (IPR005775 from INTERPRO) that is the catalytic component, and a glycosylated beta subunit that regulates the number of sodium pumps transported to the plasma membrane through the assembly of alpha/beta heterodimers. The beta subunit has three highly conserved disulphide bonds within the extracellular domain that stabilise the alpha subunit, the alpha/beta interaction, and the catalytic activity of the alpha subunit []. Different beta isoforms exist, permitting greater regulatory control. An example of a H+/K+-ATPase is the gastric pump responsible for acid secretion in the stomach, transporting protons from the cytoplasm of parietal cells to create a large pH gradient in exchange for the internalisation of potassium ions, using ATP hydrolysis to drive the pump []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0005391 sodium:potassium-exchanging ATPase activity, 0006754 ATP biosynthetic process, 0006813 potassium ion transport, 0006814 sodium ion transport, 0016020 membrane; PDB: 2XZB_B 3A3Y_B 3N2F_D 3B8E_D 3KDP_D 3N23_D.
Probab=22.32 E-value=47 Score=29.70 Aligned_cols=40 Identities=18% Similarity=0.344 Sum_probs=20.4
Q ss_pred ceehhhHHHHHHHHHHHHHHHHHHhheeeeeeCCCCEEEE
Q 047356 51 CFCKCFCWTVSILVLLLIILAAIGGILYLVFQPKLPKYSV 90 (241)
Q Consensus 51 ~ccr~~~~~~~~ll~lill~gi~~~il~lv~rPk~P~f~V 90 (241)
.|...+.+-+++-.+|+.++++.+.++|..+.++.|+++-
T Consensus 36 sW~~I~lFYlifY~~La~lfa~~m~v~l~tld~~~Pk~~~ 75 (289)
T PF00287_consen 36 SWGKILLFYLIFYAFLAALFAICMWVFLQTLDPDVPKYQD 75 (289)
T ss_dssp THHHHHHHHHTTHHHHHHHHHHHHHHHHHTSSSSS-S-ST
T ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHHCCCCCCceec
Confidence 3444444333333334444445555666677899999874
No 128
>PTZ00370 STEVOR; Provisional
Probab=22.30 E-value=60 Score=29.05 Aligned_cols=22 Identities=32% Similarity=0.590 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHhheeeee
Q 047356 58 WTVSILVLLLIILAAIGGILYLVF 81 (241)
Q Consensus 58 ~~~~~ll~lill~gi~~~il~lv~ 81 (241)
|-+++|++|++. +++.|+|+|+
T Consensus 257 ygiaalvllil~--vvliilYiwl 278 (296)
T PTZ00370 257 YGIAALVLLILA--VVLIILYIWL 278 (296)
T ss_pred cHHHHHHHHHHH--HHHHHHHHHH
Confidence 445555555444 4444445444
No 129
>PRK10697 DNA-binding transcriptional activator PspC; Provisional
Probab=21.90 E-value=66 Score=24.88 Aligned_cols=16 Identities=19% Similarity=0.125 Sum_probs=8.4
Q ss_pred HHHhheeeeeeCCCCE
Q 047356 72 AIGGILYLVFQPKLPK 87 (241)
Q Consensus 72 i~~~il~lv~rPk~P~ 87 (241)
++-+++|+++.++++.
T Consensus 54 ~~Yi~l~~~lp~~P~~ 69 (118)
T PRK10697 54 VAYIILSFALDPMPDN 69 (118)
T ss_pred HHHHHHHHhccCCccc
Confidence 3445556666555443
No 130
>PRK13836 conjugal transfer protein TrbF; Provisional
Probab=21.82 E-value=1.1e+02 Score=25.97 Aligned_cols=28 Identities=21% Similarity=0.318 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhheeeeeeC
Q 047356 56 FCWTVSILVLLLIILAAIGGILYLVFQP 83 (241)
Q Consensus 56 ~~~~~~~ll~lill~gi~~~il~lv~rP 83 (241)
..|-+++++.+++.++.+++++|+.-+.
T Consensus 30 ~~W~~~a~~~l~~a~~~v~~~~~l~~~~ 57 (220)
T PRK13836 30 AAWRIVGILGLTMAVIGFGYALYQSTQV 57 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 6688777766655555455556655543
No 131
>COG5294 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.72 E-value=87 Score=23.99 Aligned_cols=14 Identities=43% Similarity=0.534 Sum_probs=10.1
Q ss_pred EEEEEEEEeCCCce
Q 047356 109 QFDVKITANNPNKK 122 (241)
Q Consensus 109 ~~~~~l~~~NPN~k 122 (241)
-.+.++.+-|-|++
T Consensus 53 ~y~y~i~ayn~~Gk 66 (113)
T COG5294 53 GYEYTITAYNKNGK 66 (113)
T ss_pred cceeeehhhccCCc
Confidence 45678888888763
No 132
>PF11337 DUF3139: Protein of unknown function (DUF3139); InterPro: IPR021486 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=21.66 E-value=82 Score=22.48 Aligned_cols=10 Identities=20% Similarity=0.314 Sum_probs=4.2
Q ss_pred HhheeeeeeC
Q 047356 74 GGILYLVFQP 83 (241)
Q Consensus 74 ~~il~lv~rP 83 (241)
+..+|....|
T Consensus 21 ~~~~~~~~~~ 30 (85)
T PF11337_consen 21 GIYYFFNGNP 30 (85)
T ss_pred HHHHhhcCch
Confidence 3344444444
No 133
>PRK10775 cell division protein FtsQ; Provisional
Probab=21.41 E-value=1.3e+02 Score=26.68 Aligned_cols=25 Identities=16% Similarity=0.348 Sum_probs=16.5
Q ss_pred EEEEEEeCCCceeEEEECCCcEEEEE
Q 047356 111 DVKITANNPNKKIGIYYEKGGKLSVW 136 (241)
Q Consensus 111 ~~~l~~~NPN~k~~i~Y~~~~~v~v~ 136 (241)
+++++-.=||. +.|+-.+-..+..|
T Consensus 108 ~a~VrR~wPdt-L~V~V~Er~PvA~W 132 (276)
T PRK10775 108 QVSVRKQWPDE-LKIHLVEYVPIARW 132 (276)
T ss_pred EEEEEEeCCCc-EEEEEEEeecEEEe
Confidence 46777889994 88888653334444
No 134
>PTZ00116 signal peptidase; Provisional
Probab=21.24 E-value=3.4e+02 Score=22.68 Aligned_cols=45 Identities=18% Similarity=0.118 Sum_probs=23.6
Q ss_pred CCCCEEEEeeeEEeeeecCCC-----ceeEEEEEEEEEE-eCCCceeEEEE
Q 047356 83 PKLPKYSVDSLRIRDLRLNLD-----LTLYAQFDVKITA-NNPNKKIGIYY 127 (241)
Q Consensus 83 Pk~P~f~V~s~~v~~f~~~~~-----~~l~~~~~~~l~~-~NPN~k~~i~Y 127 (241)
.+.|..+++=-.|.+|.+++. ..++.++++.|+- =|=|.|.-+-|
T Consensus 36 ~~~~~~~i~v~~V~~~~~~~~~~~D~a~i~fdl~~DL~~lfnWNtKqlFvy 86 (185)
T PTZ00116 36 EKEMSTNIKVKSVKRLVYNRHIKGDEAVLSLDLSYDMSKAFNWNLKQLFLY 86 (185)
T ss_pred CCCceeeEEEeecccccccCCCCceeEEEEEeeccCchhcCCccccEEEEE
Confidence 355656665555666664431 2344444444442 26676655555
No 135
>PF10969 DUF2771: Protein of unknown function (DUF2771); InterPro: IPR024495 This bacterial family of proteins has no known function.
Probab=21.17 E-value=1.1e+02 Score=24.79 Aligned_cols=17 Identities=18% Similarity=0.229 Sum_probs=10.0
Q ss_pred heeeeee---CCCCEEEEee
Q 047356 76 ILYLVFQ---PKLPKYSVDS 92 (241)
Q Consensus 76 il~lv~r---Pk~P~f~V~s 92 (241)
..|...+ |+.|++++.+
T Consensus 22 ~~~~~~~~~~p~~p~It~~s 41 (161)
T PF10969_consen 22 GWWQLRRGSDPQDPEITAYS 41 (161)
T ss_pred HHHHhCCCCCCCCcEEEEEE
Confidence 3455443 6778877654
No 136
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=21.09 E-value=1.1e+02 Score=26.48 Aligned_cols=14 Identities=21% Similarity=0.292 Sum_probs=6.2
Q ss_pred HHHHHHHhheeeee
Q 047356 68 IILAAIGGILYLVF 81 (241)
Q Consensus 68 ll~gi~~~il~lv~ 81 (241)
++++++++++|++.
T Consensus 248 ~~~~~~~~~~~~~~ 261 (262)
T PF14257_consen 248 PLILIIGLLVRFVR 261 (262)
T ss_pred HHHHHHHHHHheEe
Confidence 34444444444443
No 137
>PF13598 DUF4139: Domain of unknown function (DUF4139)
Probab=20.43 E-value=5.5e+02 Score=22.53 Aligned_cols=38 Identities=21% Similarity=0.245 Sum_probs=26.3
Q ss_pred EEEEEEEEeCCCceeEEEECCCcEEEEEeCceeeeeccCcce
Q 047356 109 QFDVKITANNPNKKIGIYYEKGGKLSVWDERAKLCEGFLPKF 150 (241)
Q Consensus 109 ~~~~~l~~~NPN~k~~i~Y~~~~~v~v~Y~g~~Lg~~~vp~f 150 (241)
+--+..++.|+. ++-.-.+ .+.++.+|..+|++.++..
T Consensus 167 ~a~l~a~~~n~~---~~~L~~G-~~~v~~dg~~vG~~~l~~~ 204 (317)
T PF13598_consen 167 NAYLVARFKNTS---GLPLLPG-PVSVYRDGTFVGESRLPHT 204 (317)
T ss_pred CeEEEEEEECCC---CCcccCC-cEEEEECCEEEEeeecCCC
Confidence 334455667775 3334455 5899999999999988763
No 138
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=20.40 E-value=57 Score=22.45 Aligned_cols=13 Identities=31% Similarity=0.649 Sum_probs=6.9
Q ss_pred HHHHHHHHHHhhe
Q 047356 65 LLLIILAAIGGIL 77 (241)
Q Consensus 65 ~lill~gi~~~il 77 (241)
++.+++|++++.+
T Consensus 4 ilali~G~~~Gff 16 (64)
T PF03672_consen 4 ILALIVGAVIGFF 16 (64)
T ss_pred HHHHHHHHHHHHH
Confidence 3445566665544
No 139
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=20.35 E-value=1.1e+02 Score=31.19 Aligned_cols=24 Identities=38% Similarity=0.589 Sum_probs=11.3
Q ss_pred CCCCCCCCCCC--CCCCCCCCCCCCC
Q 047356 23 GSSSHQQQNPP--QRSIPVMHPNPPK 46 (241)
Q Consensus 23 ~~~~~~~~~~~--~~~~~~~~~~~~k 46 (241)
..|+.++.||| .+|+|.||++++|
T Consensus 1025 ~~~s~~q~~pP~~g~P~PpPp~~~~k 1050 (1106)
T KOG0162|consen 1025 RKPSGPQRPPPPAGRPKPPPPAKPPK 1050 (1106)
T ss_pred cCCCCCCCCCCCCCCCCccCCCCCCC
Confidence 34554333333 3455555555554
Done!