BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047357
(219 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1VCS|A Chain A, Solution Structure Of Rsgi Ruh-009, An N-Terminal Domain
Of Vti1a [mus Musculus]
Length = 102
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 8 YERQYCELSTNLSRKCSSASLLPDGDQKKEKYSEIQSGLDDADALIRKMDLEARSLQPNV 67
YE+ + L+ ++ K + LP D+KK+ + ++ L++A L+ +MDLE R + P
Sbjct: 10 YEQDFAVLTAEITSKIARVPRLPP-DEKKQMVANVEKQLEEARELLEQMDLEVREIPPQS 68
Query: 68 KAMLLAKLREYKSDLNKLKREFKR 91
+ M ++R YK ++ KL+ +FKR
Sbjct: 69 RGMYSNRMRSYKQEMGKLETDFKR 92
>pdb|1GL2|C Chain C, Crystal Structure Of An Endosomal Snare Core Complex
Length = 65
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 44/62 (70%)
Query: 127 INQSGERIRESRRVMLETEELGISIVEDLNQQRETLLNSRNKLHGVDDAISKSKKVLSSM 186
+N++ + I S R+ ET+++G I+E+L +QR+ L ++++L ++ +SKS+K+L SM
Sbjct: 4 MNRATQSIERSHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILRSM 63
Query: 187 SR 188
SR
Sbjct: 64 SR 65
>pdb|2NPS|C Chain C, Crystal Structure Of The Early Endosomal Snare Complex
Length = 81
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 48/81 (59%)
Query: 114 GEQRERLAMSVERINQSGERIRESRRVMLETEELGISIVEDLNQQRETLLNSRNKLHGVD 173
G R L + ER+ +S R+ ++ +ETE++G ++E+L+ RE + +R +L D
Sbjct: 1 GSMRAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLRETD 60
Query: 174 DAISKSKKVLSSMSRRMTRNK 194
+ KS ++L+ M RR+ +N+
Sbjct: 61 ANLGKSSRILTGMLRRIIQNR 81
>pdb|3CAZ|A Chain A, Crystal Structure Of A Bar Protein From Galdieria
Sulphuraria
pdb|3CAZ|B Chain B, Crystal Structure Of A Bar Protein From Galdieria
Sulphuraria
Length = 294
Score = 31.2 bits (69), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 62/127 (48%), Gaps = 19/127 (14%)
Query: 38 KYSEIQSGLDDA-DALIRKMDLEARSLQPNVKAMLLAKLREYKSDLNKLKREFKRVSSSD 96
+Y +Q+G A D +R +D+ + A LL K+++Y+ ++ ++K+E+K +D
Sbjct: 72 RYEVVQAGASAAHDFDVRYLDIHKHGREI---ARLLEKIQKYRQEIEEIKKEYKE---TD 125
Query: 97 AHEELLESGKADPNVVSGEQRERLAMSVERINQSGERIRESRRVMLETEELGISIVEDLN 156
+ E + K + ++E+ N+ ERI +++ + E S+ DL
Sbjct: 126 KYRERYDHYKVKLD------------NLEKKNKDQERIERNQQKFKDAEAAYSSVCADLI 173
Query: 157 QQRETLL 163
Q+ ET+
Sbjct: 174 QKXETVW 180
>pdb|2ZY5|A Chain A, R487a Mutant Of L-Aspartate Beta-Decarboxylase
pdb|2ZY5|B Chain B, R487a Mutant Of L-Aspartate Beta-Decarboxylase
pdb|2ZY5|C Chain C, R487a Mutant Of L-Aspartate Beta-Decarboxylase
pdb|2ZY5|D Chain D, R487a Mutant Of L-Aspartate Beta-Decarboxylase
pdb|2ZY5|E Chain E, R487a Mutant Of L-Aspartate Beta-Decarboxylase
pdb|2ZY5|F Chain F, R487a Mutant Of L-Aspartate Beta-Decarboxylase
Length = 546
Score = 30.4 bits (67), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
Query: 72 LAKLREYKSDLNKLKREFKRVSSSDAHEELLESGKADPNVVSGEQR 117
LAKL ++ LK E +++SSD + +L +G+ +PN ++ R
Sbjct: 8 LAKLSPFE-----LKDELIKIASSDGNRLMLNAGRGNPNFLATTPR 48
>pdb|2ZY3|A Chain A, Dodecameric L-Aspartate Beta-Decarboxylase
pdb|2ZY3|B Chain B, Dodecameric L-Aspartate Beta-Decarboxylase
pdb|2ZY3|C Chain C, Dodecameric L-Aspartate Beta-Decarboxylase
pdb|2ZY3|D Chain D, Dodecameric L-Aspartate Beta-Decarboxylase
pdb|2ZY3|E Chain E, Dodecameric L-Aspartate Beta-Decarboxylase
pdb|2ZY3|F Chain F, Dodecameric L-Aspartate Beta-Decarboxylase
pdb|2ZY4|A Chain A, Dodecameric L-Aspartate Beta-Decarboxylase
pdb|2ZY4|B Chain B, Dodecameric L-Aspartate Beta-Decarboxylase
pdb|2ZY4|C Chain C, Dodecameric L-Aspartate Beta-Decarboxylase
pdb|2ZY4|D Chain D, Dodecameric L-Aspartate Beta-Decarboxylase
pdb|2ZY4|E Chain E, Dodecameric L-Aspartate Beta-Decarboxylase
pdb|2ZY4|F Chain F, Dodecameric L-Aspartate Beta-Decarboxylase
Length = 546
Score = 30.4 bits (67), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
Query: 72 LAKLREYKSDLNKLKREFKRVSSSDAHEELLESGKADPNVVSGEQR 117
LAKL ++ LK E +++SSD + +L +G+ +PN ++ R
Sbjct: 8 LAKLSPFE-----LKDELIKIASSDGNRLMLNAGRGNPNFLATTPR 48
>pdb|3SIM|A Chain A, Crystallographic Structure Analysis Of Family 18 Chitinase
From Crocus Vernus
pdb|3SIM|B Chain B, Crystallographic Structure Analysis Of Family 18 Chitinase
From Crocus Vernus
Length = 275
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 56 MDLEARSLQPNVKAMLLAKLREYKSDLNKLKREFKRVSSSDAHEELL 102
+ + S P+V LA EYK+ +N + +FK SS + ++ L
Sbjct: 154 ISFASISPFPSVDEYYLALFNEYKNAINHINYQFKAYDSSTSVDKFL 200
>pdb|1JA3|A Chain A, Crystal Structure Of The Murine Nk Cell Inhibitory
Receptor Ly-49i
pdb|1JA3|B Chain B, Crystal Structure Of The Murine Nk Cell Inhibitory
Receptor Ly-49i
Length = 127
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 13/63 (20%)
Query: 28 LLPDG-------DQKKEKYSEIQSGLDDADALIRKMDLEARSLQPNVKAMLLAKLREYKS 80
++P+G D+KK++++ I +G D IRKM+ ++R + L+K R +
Sbjct: 55 VIPEGYWIGLSYDKKKKEWAWIDNGPSKFDMKIRKMNFKSRG------CVFLSKARIEDT 108
Query: 81 DLN 83
D N
Sbjct: 109 DCN 111
>pdb|1FYX|A Chain A, Crystal Structure Of P681h Mutant Of Tir Domain Of Human
Tlr2
Length = 149
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Query: 137 SRRVMLETEELGISIVEDLNQQRETLLNSRNKLHG------VDDAISKSKKVLSSMSRRM 190
S R E L + +E+ N + L+ R+ +HG + D+I KS K + +S
Sbjct: 13 SERDAYWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENF 72
Query: 191 TRNKW 195
+++W
Sbjct: 73 VKSEW 77
>pdb|2XHE|A Chain A, Crystal Structure Of The Unc18-Syntaxin 1 Complex From
Monosiga Brevicollis
Length = 650
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 5/39 (12%)
Query: 134 IRESRRVMLETEELGISIVEDLNQQRETLLNSRNKLHGV 172
I E R M E +LG+++VED+++QR+ L + HGV
Sbjct: 38 ISECAR-MSEILDLGVTVVEDVSKQRKVL----PQFHGV 71
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 27.7 bits (60), Expect = 4.9, Method: Composition-based stats.
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 167 NKLHGVDDAISKSKKVLSSMSRRMTRNKW 195
N++ + DAI S+K++ +SR R+ W
Sbjct: 717 NRIANIQDAIWNSRKIVCLVSRHFLRDGW 745
>pdb|1PSU|A Chain A, Structure Of The E. Coli Paai Protein From The
Phyenylacetic Acid Degradation Operon
pdb|1PSU|B Chain B, Structure Of The E. Coli Paai Protein From The
Phyenylacetic Acid Degradation Operon
Length = 140
Score = 26.9 bits (58), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 29/52 (55%)
Query: 126 RINQSGERIRESRRVMLETEELGISIVEDLNQQRETLLNSRNKLHGVDDAIS 177
R +G+ + + +V + ++ G+ +E +NQQ++T+ R K H + I+
Sbjct: 86 RPGFAGDTLTATAQVRHQGKQTGVYDIEIVNQQQKTVALFRGKSHRIGGTIT 137
>pdb|2FS2|A Chain A, Structure Of The E. Coli Paai Protein From The
Phyenylacetic Acid Degradation Operon
pdb|2FS2|B Chain B, Structure Of The E. Coli Paai Protein From The
Phyenylacetic Acid Degradation Operon
Length = 151
Score = 26.9 bits (58), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 29/52 (55%)
Query: 126 RINQSGERIRESRRVMLETEELGISIVEDLNQQRETLLNSRNKLHGVDDAIS 177
R +G+ + + +V + ++ G+ +E +NQQ++T+ R K H + I+
Sbjct: 87 RPGFAGDTLTATAQVRHQGKQTGVYDIEIVNQQQKTVALFRGKSHRIGGTIT 138
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.127 0.334
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,170,436
Number of Sequences: 62578
Number of extensions: 174705
Number of successful extensions: 459
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 445
Number of HSP's gapped (non-prelim): 25
length of query: 219
length of database: 14,973,337
effective HSP length: 95
effective length of query: 124
effective length of database: 9,028,427
effective search space: 1119524948
effective search space used: 1119524948
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 49 (23.5 bits)