BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047357
(219 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SEL5|VTI12_ARATH Vesicle transport v-SNARE 12 OS=Arabidopsis thaliana GN=VTI12 PE=1
SV=3
Length = 222
Score = 336 bits (862), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 165/222 (74%), Positives = 199/222 (89%), Gaps = 4/222 (1%)
Query: 1 MSEVFEGYERQYCELSTNLSRKCSSASLLPDGDQKKEKYSEIQSGLDDADALIRKMDLEA 60
MS+VFEGYERQYCELSTNLSRKC SAS+L +G++KK K +EI+SG+D+AD LIRKMDLEA
Sbjct: 1 MSDVFEGYERQYCELSTNLSRKCHSASVLSNGEEKKGKIAEIKSGIDEADVLIRKMDLEA 60
Query: 61 RSLQPNVKAMLLAKLREYKSDLNKLKREFKRVSSSDA----HEELLESGKADPNVVSGEQ 116
RSLQP+ KA+ L+KLREYKSDLN+LK+EFKRVSS+DA EEL+ESG AD + VS +Q
Sbjct: 61 RSLQPSAKAVCLSKLREYKSDLNQLKKEFKRVSSADAKPSSREELMESGMADLHAVSADQ 120
Query: 117 RERLAMSVERINQSGERIRESRRVMLETEELGISIVEDLNQQRETLLNSRNKLHGVDDAI 176
R RLAMSVER++QS +RIRESRR+MLETEE+GISIV+DL+QQR+TLL++ NKLHGVDDAI
Sbjct: 121 RGRLAMSVERLDQSSDRIRESRRLMLETEEVGISIVQDLSQQRQTLLHAHNKLHGVDDAI 180
Query: 177 SKSKKVLSSMSRRMTRNKWIVGSIIVALVIAIIFILFYKLSH 218
KSKKVL++MSRRMTRNKWI+ S+IVALV+AII I+ YKLSH
Sbjct: 181 DKSKKVLTAMSRRMTRNKWIITSVIVALVLAIILIISYKLSH 222
>sp|Q9LVP9|VTI13_ARATH Vesicle transport v-SNARE 13 OS=Arabidopsis thaliana GN=VTI13 PE=2
SV=1
Length = 221
Score = 270 bits (690), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 129/221 (58%), Positives = 176/221 (79%), Gaps = 5/221 (2%)
Query: 1 MSEVFEGYERQYCELSTNLSRKCSSASLLPDGDQKKEKYSEIQSGLDDADALIRKMDLEA 60
MS+ FE YERQYCE+S NLS+KC+SA L DG+QKK+ SEI+SG+++A+AL++KMDLEA
Sbjct: 1 MSQGFERYERQYCEISANLSKKCTSAIAL-DGEQKKQNLSEIKSGVEEAEALVKKMDLEA 59
Query: 61 RSLQPNVKAMLLAKLREYKSDLNKLKREFKRVSSSD----AHEELLESGKADPNVVSGEQ 116
R+L PNVK+ LL KLREYKSDLN K E KR++S + A +ELLE+G AD S +Q
Sbjct: 60 RNLPPNVKSSLLVKLREYKSDLNNFKTEVKRITSGNLNATARDELLEAGMADTLTASADQ 119
Query: 117 RERLAMSVERINQSGERIRESRRVMLETEELGISIVEDLNQQRETLLNSRNKLHGVDDAI 176
R RL MS + + ++ +RI++SRR +LETEELG+SI++DL+ QR++LL + LHGVDD +
Sbjct: 120 RSRLMMSTDHLGRTTDRIKDSRRTILETEELGVSILQDLHGQRQSLLRAHETLHGVDDNV 179
Query: 177 SKSKKVLSSMSRRMTRNKWIVGSIIVALVIAIIFILFYKLS 217
KSKK+L++M+RRM RNKW +G+II LV+AIIFIL++KL+
Sbjct: 180 GKSKKILTTMTRRMNRNKWTIGAIITVLVLAIIFILYFKLT 220
>sp|Q9SEL6|VTI11_ARATH Vesicle transport v-SNARE 11 OS=Arabidopsis thaliana GN=VTI11 PE=1
SV=2
Length = 221
Score = 247 bits (631), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 130/221 (58%), Positives = 176/221 (79%), Gaps = 5/221 (2%)
Query: 1 MSEVFEGYERQYCELSTNLSRKCSSASLLPDGDQKKEKYSEIQSGLDDADALIRKMDLEA 60
MS+VF+GYERQYCELS +LS+KCSSA L DG+QKK+K SEI+SGL++A+ LIRKMDLEA
Sbjct: 1 MSDVFDGYERQYCELSASLSKKCSSAISL-DGEQKKQKLSEIKSGLENAEVLIRKMDLEA 59
Query: 61 RSLQPNVKAMLLAKLREYKSDLNKLKREFKRVSSSD----AHEELLESGKADPNVVSGEQ 116
R+L PN+K+ LL KLRE+KSDLN K E KR++S A +ELLE+G AD S +Q
Sbjct: 60 RTLPPNLKSSLLVKLREFKSDLNNFKTEVKRITSGQLNAAARDELLEAGMADTKTASADQ 119
Query: 117 RERLAMSVERINQSGERIRESRRVMLETEELGISIVEDLNQQRETLLNSRNKLHGVDDAI 176
R RL MS ER+ ++ +R+++SRR M+ETEE+G+SI++DL+ QR++LL + LHGVDD I
Sbjct: 120 RARLMMSTERLGRTTDRVKDSRRTMMETEEIGVSILQDLHGQRQSLLRAHETLHGVDDNI 179
Query: 177 SKSKKVLSSMSRRMTRNKWIVGSIIVALVIAIIFILFYKLS 217
KSKK+L+ M+RRM +NKW +G+II+AL+ AI IL++KL+
Sbjct: 180 GKSKKILTDMTRRMNKNKWTIGAIIIALIAAIFIILYFKLT 220
>sp|O89116|VTI1A_MOUSE Vesicle transport through interaction with t-SNAREs homolog 1A
OS=Mus musculus GN=Vti1a PE=1 SV=1
Length = 217
Score = 116 bits (290), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 125/222 (56%), Gaps = 8/222 (3%)
Query: 1 MSEVFEGYERQYCELSTNLSRKCSSASLLPDGDQKKEKYSEIQSGLDDADALIRKMDLEA 60
MS FEGYE+ + L+ ++ K + LP D+KK+ + ++ L++A L+ +MDLE
Sbjct: 1 MSSDFEGYEQDFAVLTAEITSKIARVPRLPP-DEKKQMVANVEKQLEEARELLEQMDLEV 59
Query: 61 RSLQPNVKAMLLAKLREYKSDLNKLKREFKR---VSSSDAHEELLESGKADPNVVSGEQR 117
R + P + M ++R YK ++ KL+ +FKR S + ELL D S QR
Sbjct: 60 REIPPQSRGMYSNRMRSYKQEMGKLETDFKRSRIAYSDEVRNELL----GDAGNSSENQR 115
Query: 118 ERLAMSVERINQSGERIRESRRVMLETEELGISIVEDLNQQRETLLNSRNKLHGVDDAIS 177
L + ER+ +S R+ ++ +ETE++G ++E+L+ RE + +R++L D +
Sbjct: 116 AHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDREKIQRARDRLRDADANLG 175
Query: 178 KSKKVLSSMSRRMTRNKWIVGSIIVALVIAIIFILFYKLSHH 219
KS ++L+ M RR+ +N+ ++ + + +VIAI+ + + + H
Sbjct: 176 KSSRILTGMLRRIIQNRILLVILGIIVVIAILTAIAFFVKGH 217
>sp|Q96AJ9|VTI1A_HUMAN Vesicle transport through interaction with t-SNAREs homolog 1A
OS=Homo sapiens GN=VTI1A PE=1 SV=2
Length = 217
Score = 115 bits (288), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 67/222 (30%), Positives = 123/222 (55%), Gaps = 8/222 (3%)
Query: 1 MSEVFEGYERQYCELSTNLSRKCSSASLLPDGDQKKEKYSEIQSGLDDADALIRKMDLEA 60
MS FEGYE+ + L+ ++ K + LP D+KK+ + ++ L++A L+ +MDLE
Sbjct: 1 MSSDFEGYEQDFAVLTAEITSKIARVPRLPP-DEKKQMVANVEKQLEEAKELLEQMDLEV 59
Query: 61 RSLQPNVKAMLLAKLREYKSDLNKLKREFKR---VSSSDAHEELLESGKADPNVVSGEQR 117
R + P + M ++R YK ++ KL+ +FKR S + ELL D S QR
Sbjct: 60 REIPPQSRGMYSNRMRSYKQEMGKLETDFKRSRIAYSDEVRNELL----GDDGNSSENQR 115
Query: 118 ERLAMSVERINQSGERIRESRRVMLETEELGISIVEDLNQQRETLLNSRNKLHGVDDAIS 177
L + ER+ +S R+ ++ +ETE++G ++E+L+ RE + +R +L D +
Sbjct: 116 AHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDREKIQRARERLRETDANLG 175
Query: 178 KSKKVLSSMSRRMTRNKWIVGSIIVALVIAIIFILFYKLSHH 219
KS ++L+ M RR+ +N+ ++ + + +VI I+ + + + H
Sbjct: 176 KSSRILTGMLRRIIQNRILLVILGIIVVITILMAITFSVRRH 217
>sp|Q9JI51|VTI1A_RAT Vesicle transport through interaction with t-SNAREs homolog 1A
OS=Rattus norvegicus GN=Vti1a PE=1 SV=1
Length = 224
Score = 113 bits (282), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 70/225 (31%), Positives = 128/225 (56%), Gaps = 8/225 (3%)
Query: 1 MSEVFEGYERQYCELSTNLSRKCSSASLLPDGDQKKEKYSEIQSGLDDADALIRKMDLEA 60
MS FEGYE+ + L+ ++ K S LP D+KK+ + ++ L++A L+ +MDLE
Sbjct: 1 MSADFEGYEQDFAVLTAEITSKISRVPRLPP-DEKKQMVANVEKQLEEARELLEQMDLEV 59
Query: 61 RSLQPNVKAMLLAKLREYKSDLNKLKREFKR---VSSSDAHEELL-ESGKADPN--VVSG 114
R + P + M ++R YK ++ KL+ +FKR S + ELL ++G + N +
Sbjct: 60 REIPPQSRGMYSNRMRSYKQEMGKLETDFKRSRIAYSDEVRNELLGDAGNSSENQLIKLR 119
Query: 115 EQRERLAMSVERINQSGERIRESRRVMLETEELGISIVEDLNQQRETLLNSRNKLHGVDD 174
E+R L + ER+ +S R+ ++ +ETE++G ++E+L+ RE + +R +L D
Sbjct: 120 EERAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLRETDA 179
Query: 175 AISKSKKVLSSMSRRMTRNKWIVGSIIVALVIAIIF-ILFYKLSH 218
+ KS ++L+ M RR+ +N+ ++ + + +VI I+ I F+ H
Sbjct: 180 NLGKSSRILTGMLRRIIQNRILLVILGIIVVITILTAITFFVRGH 224
>sp|O88384|VTI1B_MOUSE Vesicle transport through interaction with t-SNAREs homolog 1B
OS=Mus musculus GN=Vti1b PE=1 SV=1
Length = 232
Score = 82.8 bits (203), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 103/198 (52%), Gaps = 16/198 (8%)
Query: 33 DQKKEKYSEIQSGLDDADALIRKMDLEARSLQPNVKAMLLAKLREYKSDLNKLKREFKRV 92
++KK+ + +A+ + +M+ E R + +++KLR Y+ DL KL RE +
Sbjct: 39 EEKKKLVRDFDENQQEANETLAEMEEELRYAPLTFRNPMMSKLRNYRKDLAKLHREVRST 98
Query: 93 SSSDAHEELLESGKADPNVVS-----------GEQRERLAMSVERINQSGERIRESRRVM 141
+ A G+ D + QR L E +N++ + I S R+
Sbjct: 99 PLTAA-----PGGRGDLKYGTYTLENEHLNRLQSQRALLLQGTESLNRATQSIERSHRIA 153
Query: 142 LETEELGISIVEDLNQQRETLLNSRNKLHGVDDAISKSKKVLSSMSRRMTRNKWIVGSII 201
ET+++G I+E+L +QR+ L ++++L ++ +SKS+K+L SMSR++ NK ++ II
Sbjct: 154 TETDQIGTEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILRSMSRKVITNKLLLSVII 213
Query: 202 VALVIAIIFILFYKLSHH 219
+ + ++ +++YK H
Sbjct: 214 LLELAILVGLVYYKFFRH 231
>sp|P58200|VTI1B_RAT Vesicle transport through interaction with t-SNAREs homolog 1B
OS=Rattus norvegicus GN=Vti1b PE=1 SV=2
Length = 232
Score = 80.9 bits (198), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 102/198 (51%), Gaps = 16/198 (8%)
Query: 33 DQKKEKYSEIQSGLDDADALIRKMDLEARSLQPNVKAMLLAKLREYKSDLNKLKREFKRV 92
++KK+ + +A+ + +M+ E R + +++KLR Y+ DL KL RE +
Sbjct: 39 EEKKKLVRDFDEKQQEANETLAEMEEELRYAPLTFRNSMMSKLRNYRKDLAKLHREVRST 98
Query: 93 SSSDAHEELLESGKADPNVVS-----------GEQRERLAMSVERINQSGERIRESRRVM 141
+ G+ D + QR L E +N++ + I S R+
Sbjct: 99 PLTAT-----PGGRGDLKFGTYTLENEHLNRLQSQRALLLQGTESLNRATQSIERSHRIA 153
Query: 142 LETEELGISIVEDLNQQRETLLNSRNKLHGVDDAISKSKKVLSSMSRRMTRNKWIVGSII 201
ET+++G I+E+L +QR+ L ++++L ++ +SKS+K+L SMSR++ NK ++ II
Sbjct: 154 AETDQIGSEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILRSMSRKVITNKLLLSVII 213
Query: 202 VALVIAIIFILFYKLSHH 219
V + ++ +++YK H
Sbjct: 214 VLELAILVGLVYYKFFRH 231
>sp|Q2KIU0|VTI1B_BOVIN Vesicle transport through interaction with t-SNAREs homolog 1B
OS=Bos taurus GN=VTI1B PE=2 SV=1
Length = 232
Score = 76.6 bits (187), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 110/200 (55%), Gaps = 26/200 (13%)
Query: 28 LLPDGDQKKEKYSEIQSGLDDADALIRKMDLEARSLQPNVKAMLLAKLREYKSDLNKLKR 87
L+ D D+K++ +A+ + +M+ E R + + +++KLR Y+ DL KL R
Sbjct: 44 LIRDFDEKQQ----------EANETLAEMEEELRYAPLSFRNPMMSKLRTYRKDLAKLHR 93
Query: 88 EFKRV---SSSDAHEELLESGKADPNVVSGE-------QRERLAMSVERINQSGERIRES 137
E + ++ A ++ K V E QR L + +N++ + I S
Sbjct: 94 EVRSTPLTATPGARGDM----KYGTYAVENEHMNRLQSQRALLLQGTDSLNRATQSIERS 149
Query: 138 RRVMLETEELGISIVEDLNQQRETLLNSRNKLHGVDDAISKSKKVLSSMSRRMTRNKWIV 197
R+ ET+++G I+E+L +QR+ L ++++L + +SKS+K+L SMSR++T NK ++
Sbjct: 150 HRIAAETDQIGSEIIEELGEQRDQLERTKSRLVNTSENLSKSRKILRSMSRKVTTNKLLL 209
Query: 198 GSIIVALVIAII-FILFYKL 216
SI++ L +AI+ +++YK
Sbjct: 210 -SIVILLELAILGGLVYYKF 228
>sp|Q54CK6|VTI1A_DICDI Vesicle transport through interaction with t-SNAREs homolog 1A
OS=Dictyostelium discoideum GN=vti1A PE=1 SV=1
Length = 217
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 106/197 (53%), Gaps = 10/197 (5%)
Query: 3 EVFEGYERQYCELSTNLSRKCSSASLLPD--GDQKKEKYSEIQSGLDDADALIRKMDLEA 60
+VFE E+ + + +++R+ LP+ G++KK E+++ +D+A I +M+ A
Sbjct: 2 DVFERTEQNFQHVCNSITRRIKQ---LPNYGGEKKKIAVREVENDIDEALKFISEMEKLA 58
Query: 61 RSLQPNVKAMLLAKLREYKSDLNKLKREFKRV---SSSDAHEELLESGKADPNVVSGEQR 117
++ +K L K ++Y SD+ K KRE + SS+ + + D QR
Sbjct: 59 QNHPQRIK--LQTKTKQYHSDIQKYKREVQLAQLQSSNQTNSNPWSNAPDDYQSQYDNQR 116
Query: 118 ERLAMSVERINQSGERIRESRRVMLETEELGISIVEDLNQQRETLLNSRNKLHGVDDAIS 177
+ L ++ + +R+ + ++ ++E++G +I+ DL +Q E + R+KLH DD I
Sbjct: 117 QHLLQGSNMLDSTSDRLLRTHQISAQSEQIGQNILMDLGKQGEQIRGMRDKLHETDDQIK 176
Query: 178 KSKKVLSSMSRRMTRNK 194
++K+++ ++RR+ NK
Sbjct: 177 SARKIMTGIARRLATNK 193
>sp|Q04338|VTI1_YEAST t-SNARE VTI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=VTI1 PE=1 SV=3
Length = 217
Score = 74.3 bits (181), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 104/201 (51%), Gaps = 10/201 (4%)
Query: 1 MSEVFEGYERQYCELSTNLSRKCSSASLLPDG--DQKKEKYSEIQSGLDDADALIRKMDL 58
MS + YE + T L + +S + P Q+ ++ D+ L+ +MD+
Sbjct: 1 MSSLLISYE---SDFKTTLEQAKASLAEAPSQPLSQRNTTLKHVEQQQDELFDLLDQMDV 57
Query: 59 EARSLQPNV--KAMLLAKLREYKSDL-NKLKREFKRVSSSDAHEELLESGKADPNVVSGE 115
E + + +A AKLRE+K + + +KR + + S + L G + + + +
Sbjct: 58 EVNNSIGDASERATYKAKLREWKKTIQSDIKRPLQSLVDSGDRDRLF--GDLNASNIDDD 115
Query: 116 QRERLAMSVERINQSGERIRESRRVMLETEELGISIVEDLNQQRETLLNSRNKLHGVDDA 175
QR++L + + +SG+R++++ R+ ETE +G I+ DL QRETL N+R L D
Sbjct: 116 QRQQLLSNHAILQKSGDRLKDASRIANETEGIGSQIMMDLRSQRETLENARQTLFQADSY 175
Query: 176 ISKSKKVLSSMSRRMTRNKWI 196
+ KS K L +M+RR+ NK+I
Sbjct: 176 VDKSIKTLKTMTRRLVANKFI 196
>sp|Q9UEU0|VTI1B_HUMAN Vesicle transport through interaction with t-SNAREs homolog 1B
OS=Homo sapiens GN=VTI1B PE=1 SV=3
Length = 232
Score = 70.5 bits (171), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 96/180 (53%), Gaps = 16/180 (8%)
Query: 48 DADALIRKMDLEARSLQPNVKAMLLAKLREYKSDLNKLKREFKRVSSSDAHEELLESGKA 107
+A+ + +M+ E R + + +++KLR Y+ DL KL RE + + G+
Sbjct: 54 EANETLAEMEEELRYAPLSFRNPMMSKLRNYRKDLAKLHREVRSTPLTAT-----PGGRG 108
Query: 108 DPN----VVSGE-------QRERLAMSVERINQSGERIRESRRVMLETEELGISIVEDLN 156
D V E QR L E +N++ + I S R+ ET+++G I+E+L
Sbjct: 109 DMKYGIYAVENEHMNRLQSQRAMLLQGTESLNRATQSIERSHRIATETDQIGSEIIEELG 168
Query: 157 QQRETLLNSRNKLHGVDDAISKSKKVLSSMSRRMTRNKWIVGSIIVALVIAIIFILFYKL 216
+QR+ L ++++L + +SKS+K+L SMSR++T NK ++ II+ + + +++YK
Sbjct: 169 EQRDQLERTKSRLVNTSENLSKSRKILRSMSRKVTTNKLLLSIIILLELAILGGLVYYKF 228
>sp|P78768|VTI1_SCHPO Vesicle transport v-SNARE protein vti1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=vti1 PE=2 SV=2
Length = 214
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 100/212 (47%), Gaps = 37/212 (17%)
Query: 5 FEGYERQYCELSTNLSRKCSSASLLPDGDQKKEKYSEIQSG---LDDADALIRKMDLEAR 61
E YE++Y L ++ K + S K + S IQS L++ D +I +M++E
Sbjct: 1 METYEQEYRLLRADIEEKLNDLS-------KSGENSVIQSCQRLLNEIDEVIGQMEIEIT 53
Query: 62 SLQPNVKAMLLAKLREYKSDLNKLKREFKRVSSSDAHEELLESGKADPNVVSG------- 114
+ + + ++ ++R Y+S L + +R K E GK+D + G
Sbjct: 54 GIPTSERGLVNGRIRSYRSTLEEWRRHLKE-----------EIGKSDRKALFGNRDETSG 102
Query: 115 ---------EQRERLAMSVERINQSGERIRESRRVMLETEELGISIVEDLNQQRETLLNS 165
+QR RL R+ QS +R+ ES+R+ ETE +G SI+ DL+ QR L +S
Sbjct: 103 DYIASDQDYDQRTRLLQGTNRLEQSSQRLLESQRIANETEGIGASILRDLHGQRNQLEHS 162
Query: 166 RNKLHGVDDAISKSKKVLSSMSRRMTRNKWIV 197
L + +S + L +M+RR+ N++
Sbjct: 163 LEMLGDTSGHLDRSLRTLKTMARRLAMNRFFT 194
>sp|Q9SJL6|MEM11_ARATH Membrin-11 OS=Arabidopsis thaliana GN=MEMB11 PE=1 SV=1
Length = 225
Score = 36.6 bits (83), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 129 QSGERIRESRRVMLETEELGISIVEDLNQQRETLLNSRNKLHGVDDAISKSKKVLSSMSR 188
Q+ ++ S+R++ E+ G++I+ +QR+ L +++ K V + + S VL + R
Sbjct: 138 QAMSSVKNSKRMLEESFSSGVAILSKYAEQRDRLKSAQRKALDVLNTVGLSNSVLRLIER 197
Query: 189 RMTRNKWI-VGSIIVALVIAIIFILFYK 215
R + WI +I LVI +FI + +
Sbjct: 198 RNRVDTWIKYAGMIATLVILYLFIRWTR 225
>sp|Q9FK28|MEM12_ARATH Membrin-12 OS=Arabidopsis thaliana GN=MEMB12 PE=2 SV=1
Length = 219
Score = 35.8 bits (81), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 134 IRESRRVMLETEELGISIVEDLNQQRETLLNSRNKLHGVDDAISKSKKVLSSMSRRMTRN 193
++ S+R++ ++ + G++I+ +QR+ L +++ K V + + S VL + RR +
Sbjct: 137 VKNSKRMLEDSFQSGVAILSKYAEQRDRLKSAQRKALDVLNTVGLSNSVLRLIERRNRVD 196
Query: 194 KWI-VGSIIVALVIAIIFILFYK 215
WI +I LVI +FI + +
Sbjct: 197 TWIKYAGMIATLVILYLFIRWTR 219
>sp|A8XP14|GOSR2_CAEBR Probable Golgi SNAP receptor complex member 2 OS=Caenorhabditis
briggsae GN=gosr-2.1 PE=3 SV=1
Length = 212
Score = 35.8 bits (81), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 11/130 (8%)
Query: 87 REFKRVSSSDAHEELLESGKADPNVVSGEQRERLAMSVERINQSGERIRESRRVMLETEE 146
R +R S+ EELL S + PN + L++ + Q +R+ S + E
Sbjct: 91 RMTQRWRSASEREELL-SARYRPNDTA------LSIGDHEL-QLNDRLHSSHNRLDELIS 142
Query: 147 LGISIVEDLNQQRETLLNSRNKLHGVDDAISKSKKVLSSMSRRMTRNKWIVGSIIVALVI 206
G +++++L Q +L K+H + A+ S L + RR+ R WI +I +V
Sbjct: 143 QGSAVLDNLKSQHFSLRGVSRKMHDIGQALGLSNSTLQVIDRRV-REDWIF--VIGCIVC 199
Query: 207 AIIFILFYKL 216
I FY+
Sbjct: 200 CIFMYAFYRF 209
>sp|Q5BKX8|MURC_HUMAN Muscle-related coiled-coil protein OS=Homo sapiens GN=MURC PE=1
SV=2
Length = 364
Score = 34.7 bits (78), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 22/27 (81%)
Query: 111 VVSGEQRERLAMSVERINQSGERIRES 137
+V+ E+RERL S ER+ QSGER+R+S
Sbjct: 225 IVTPERRERLRQSGERLRQSGERLRQS 251
>sp|B1PRL5|MURC_RAT Muscle-related coiled-coil protein OS=Rattus norvegicus GN=Murc
PE=2 SV=1
Length = 362
Score = 34.7 bits (78), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 22/27 (81%)
Query: 111 VVSGEQRERLAMSVERINQSGERIRES 137
+V+ E+RERL S ER+ QSGER+R+S
Sbjct: 224 IVTPERRERLRQSGERLRQSGERLRQS 250
>sp|A2AMM0|MURC_MOUSE Muscle-related coiled-coil protein OS=Mus musculus GN=Murc PE=2
SV=1
Length = 362
Score = 34.7 bits (78), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 22/27 (81%)
Query: 111 VVSGEQRERLAMSVERINQSGERIRES 137
+V+ E+RERL S ER+ QSGER+R+S
Sbjct: 224 IVTPERRERLRQSGERLRQSGERLRQS 250
>sp|P41941|GOSR2_CAEEL Probable Golgi SNAP receptor complex member 2 OS=Caenorhabditis
elegans GN=gosr-2.1 PE=3 SV=1
Length = 213
Score = 34.3 bits (77), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 148 GISIVEDLNQQRETLLNSRNKLHGVDDAISKSKKVLSSMSRRMTRNKWIVGSIIVALVIA 207
G +++E+L Q L K+H + A+ S L + RR+ R WI+ ++ ++
Sbjct: 144 GSAVLENLKSQHLNLRGVGRKMHEIGQALGLSNSTLQVIDRRV-REDWIL--FVIGCIVC 200
Query: 208 IIFIL-FYKL 216
IF+ FY+
Sbjct: 201 CIFMYAFYRF 210
>sp|P19137|LAMA1_MOUSE Laminin subunit alpha-1 OS=Mus musculus GN=Lama1 PE=1 SV=1
Length = 3084
Score = 33.9 bits (76), Expect = 0.79, Method: Composition-based stats.
Identities = 37/179 (20%), Positives = 75/179 (41%), Gaps = 4/179 (2%)
Query: 18 NLSRKCSSASLLPDGDQKKEKYSEIQSGLDDADALIRKMDLEARSLQPNVKAMLLAKLRE 77
N+S +SA+ + Q + +E+ + DA K DL + SL KA+L R
Sbjct: 1902 NVSLNATSAAHVHSNIQTLTEEAEMLAA--DAHKTANKTDLISESLASRGKAVLQRSSRF 1959
Query: 78 YKSDLNKLKREFKRVSSSDAHEELLESGKADPNVVSGEQRERLAMSVERINQSGERIRES 137
K + +++ D + L + + ++ + + LAM E E+ R++
Sbjct: 1960 LKESVGTRRKQQGITMKLDELKNLTSQFQESVDNITKQANDSLAMLRESPGGMREKGRKA 2019
Query: 138 RRVMLETEELGISIVEDLNQQRETLLNSRNKLHGVDDAISKSKKVL--SSMSRRMTRNK 194
R + E + +ED+ + N+ L V+ + ++ +L S+M+ + K
Sbjct: 2020 RELAAAANESAVKTLEDVLALSLRVFNTSEDLSRVNATVQETNDLLHNSTMTTLLAGRK 2078
>sp|P32856|STX2_HUMAN Syntaxin-2 OS=Homo sapiens GN=STX2 PE=1 SV=3
Length = 288
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 62/129 (48%), Gaps = 10/129 (7%)
Query: 91 RVSSSDAHEELLESGKAD---PNVVSGEQRERLAMSVERINQSGERIRESRRVMLETEEL 147
R ++ D EE+LESGK +++S Q R A++ I + I + + E E+
Sbjct: 157 RTTTDDELEEMLESGKPSIFTSDIISDSQITRQALN--EIESRHKDIMKLETSIRELHEM 214
Query: 148 GISIVEDLNQQRETLLN-SRNKLHGVD---DAISKSKKVLSSMSRRMTRNKWIVGSIIVA 203
+ + + Q E + N RN ++ D A ++KK + S + R KWI+ ++ V
Sbjct: 215 FMDMAMFVETQGEMINNIERNVMNATDYVEHAKEETKKAIKYQS-KARRKKWIIIAVSVV 273
Query: 204 LVIAIIFIL 212
LV I I+
Sbjct: 274 LVAIIALII 282
>sp|A5PJI6|MURC_BOVIN Muscle-related coiled-coil protein OS=Bos taurus GN=MURC PE=2 SV=2
Length = 361
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 22/27 (81%)
Query: 111 VVSGEQRERLAMSVERINQSGERIRES 137
+V+ E+RERL S ER+ QSGER+++S
Sbjct: 224 IVTPERRERLRQSGERLRQSGERLKQS 250
>sp|Q54KS8|SYFA_DICDI Phenylalanine--tRNA ligase alpha subunit OS=Dictyostelium
discoideum GN=phesA PE=3 SV=1
Length = 487
Score = 32.3 bits (72), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 35 KKEKYSEIQSGLDDADALIRKMD-LEARSLQPNVKAMLLAKLREYKSDLNKLKREFKRVS 93
K E+Y++ L D + K D E S + N+ AM + + Y+ LNK+K EFK++
Sbjct: 169 KGEQYNKRSKELSDLTIEMLKDDSWEKESFKVNINAMGVVPEQGYRHPLNKVKNEFKQIF 228
Query: 94 SSDAHEEL 101
EE+
Sbjct: 229 LDMGFEEM 236
>sp|Q75CY3|BOS1_ASHGO Protein transport protein BOS1 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=BOS1
PE=3 SV=2
Length = 220
Score = 32.3 bits (72), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 29/139 (20%), Positives = 60/139 (43%), Gaps = 15/139 (10%)
Query: 86 KREFKRVSSSDAHEELLESGKADPNVVSGEQRERLAMSVERINQSG-----ERIRESRRV 140
+R F+ + ++ +SG A P G +R A + IN +G E +R + +
Sbjct: 81 RRRFEGLRAASMQPVAFQSGAAAPE---GAVSQRAAGARTTINSAGGLPLYEGLRREQNM 137
Query: 141 MLETE-------ELGISIVEDLNQQRETLLNSRNKLHGVDDAISKSKKVLSSMSRRMTRN 193
+ ++G +ED+ +Q L ++ G + S + + RR+ ++
Sbjct: 138 LARGNARLDSILQMGQESLEDMVEQHRILQRVAERMQGSLRTLGVSDATIERIGRRVKKD 197
Query: 194 KWIVGSIIVALVIAIIFIL 212
K I S + LV+ + ++L
Sbjct: 198 KAIFWSSLTLLVVGVYYVL 216
>sp|Q09835|GOS1_SCHPO Protein transport protein gos1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=gos1 PE=3 SV=1
Length = 182
Score = 32.3 bits (72), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Query: 153 EDLNQQRETLLNSRNKLHGVDDAISKSKKVLSSMSRRMTRNKWIVGSIIVALVIAIIFIL 212
ED + Q L N N+++G +I ++L S R R+ SII+AL+I+++ +L
Sbjct: 123 EDFDYQNSVLGNVTNRINGAAMSIPFINQILRKTSIRRRRD-----SIILALLISVLMLL 177
Query: 213 F 213
F
Sbjct: 178 F 178
>sp|Q66GS9|CP135_HUMAN Centrosomal protein of 135 kDa OS=Homo sapiens GN=CEP135 PE=1 SV=2
Length = 1140
Score = 31.6 bits (70), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 65/122 (53%), Gaps = 16/122 (13%)
Query: 49 ADALIRKMDLEARSLQPNVKAMLLAKLREYKSDLNKLKREFKRVSSSDAHEELLESGKAD 108
AD I+++ E LQ + AM+ + +R+Y + +RE +R+S + L+ G++
Sbjct: 202 ADNRIQELQQEVHQLQEKL-AMMESGVRDYSKQIELREREIERLSVA------LDGGRS- 253
Query: 109 PNVVSGEQRER--------LAMSVERINQSGERIRESRRVMLETEELGISIVEDLNQQRE 160
P+V+S E R + L + V+ + Q+ + + + R ++ET+E S V +L+ + E
Sbjct: 254 PDVLSLESRNKTNEKLIAHLNIQVDFLQQANKDLEKRIRELMETKETVTSEVVNLSNKNE 313
Query: 161 TL 162
L
Sbjct: 314 KL 315
>sp|A2VDA9|MURC_XENLA Muscle-related coiled-coil protein OS=Xenopus laevis GN=murc PE=2
SV=1
Length = 359
Score = 31.2 bits (69), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 20/27 (74%)
Query: 111 VVSGEQRERLAMSVERINQSGERIRES 137
+V+ E+RERL S ER+ SGER ++S
Sbjct: 221 IVTPERRERLRQSGERLKTSGERFKQS 247
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.130 0.343
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,355,414
Number of Sequences: 539616
Number of extensions: 2597688
Number of successful extensions: 11020
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 384
Number of HSP's that attempted gapping in prelim test: 10647
Number of HSP's gapped (non-prelim): 679
length of query: 219
length of database: 191,569,459
effective HSP length: 113
effective length of query: 106
effective length of database: 130,592,851
effective search space: 13842842206
effective search space used: 13842842206
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (27.3 bits)