Query 047357
Match_columns 219
No_of_seqs 118 out of 801
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 10:20:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047357.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047357hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1666 V-SNARE [Intracellular 100.0 4.8E-49 1E-53 303.8 26.1 216 1-217 1-220 (220)
2 KOG3251 Golgi SNAP receptor co 99.9 9.7E-22 2.1E-26 153.3 22.7 202 1-213 1-210 (213)
3 KOG3208 SNARE protein GS28 [In 99.9 7E-22 1.5E-26 153.7 19.8 201 1-210 3-227 (231)
4 PF05008 V-SNARE: Vesicle tran 99.6 2.3E-14 5.1E-19 97.4 10.9 79 12-91 1-79 (79)
5 PF12352 V-SNARE_C: Snare regi 99.5 4.5E-14 9.7E-19 92.7 8.6 65 126-190 2-66 (66)
6 PF03908 Sec20: Sec20; InterP 99.4 6.4E-12 1.4E-16 87.8 12.2 86 130-215 6-91 (92)
7 KOG3202 SNARE protein TLG1/Syn 98.9 1.6E-06 3.5E-11 70.1 21.9 188 5-193 8-212 (235)
8 KOG0812 SNARE protein SED5/Syn 98.6 0.00011 2.4E-09 60.3 22.7 86 119-204 213-299 (311)
9 PF09753 Use1: Membrane fusion 98.4 8E-05 1.7E-09 61.5 19.3 83 133-217 168-251 (251)
10 KOG0809 SNARE protein TLG2/Syn 98.3 0.00018 4E-09 59.3 18.0 193 4-196 58-282 (305)
11 KOG0810 SNARE protein Syntaxin 98.0 0.0023 5.1E-08 53.8 19.2 80 132-211 206-288 (297)
12 PF00957 Synaptobrevin: Synapt 98.0 0.00053 1.1E-08 47.3 12.6 84 131-214 2-85 (89)
13 COG5325 t-SNARE complex subuni 97.7 0.02 4.3E-07 47.1 20.9 88 131-218 194-282 (283)
14 COG5074 t-SNARE complex subuni 97.4 0.042 9.1E-07 44.2 21.8 80 132-212 185-268 (280)
15 KOG3385 V-SNARE [Intracellular 97.3 0.002 4.4E-08 45.9 7.6 73 132-205 36-108 (118)
16 smart00397 t_SNARE Helical reg 97.2 0.0026 5.7E-08 40.7 7.6 60 126-185 6-65 (66)
17 KOG0860 Synaptobrevin/VAMP-lik 97.2 0.017 3.6E-07 41.5 12.0 82 131-212 28-113 (116)
18 KOG2678 Predicted membrane pro 97.2 0.015 3.4E-07 46.2 12.9 81 139-219 162-242 (244)
19 KOG3065 SNAP-25 (synaptosome-a 97.1 0.0055 1.2E-07 50.9 9.7 61 128-188 75-135 (273)
20 KOG0811 SNARE protein PEP12/VA 97.0 0.16 3.4E-06 42.2 23.5 88 128-215 176-266 (269)
21 KOG3894 SNARE protein Syntaxin 96.9 0.0096 2.1E-07 49.8 9.8 87 128-214 228-314 (316)
22 PF05739 SNARE: SNARE domain; 96.8 0.026 5.6E-07 36.0 9.0 59 132-190 4-62 (63)
23 PF04210 MtrG: Tetrahydrometha 96.2 0.06 1.3E-06 34.8 7.6 57 160-216 12-69 (70)
24 cd00193 t_SNARE Soluble NSF (N 95.8 0.082 1.8E-06 32.9 7.3 54 132-185 6-59 (60)
25 KOG1666 V-SNARE [Intracellular 95.8 0.74 1.6E-05 36.7 18.8 169 9-204 38-212 (220)
26 COG4064 MtrG Tetrahydromethano 95.8 0.089 1.9E-06 34.0 7.1 56 163-218 18-74 (75)
27 PRK01026 tetrahydromethanopter 95.7 0.13 2.9E-06 34.0 7.7 57 160-216 15-72 (77)
28 TIGR01149 mtrG N5-methyltetrah 95.6 0.16 3.5E-06 32.8 7.9 56 161-216 13-69 (70)
29 PRK10884 SH3 domain-containing 95.1 1.2 2.6E-05 35.6 13.2 59 151-212 133-191 (206)
30 KOG0860 Synaptobrevin/VAMP-lik 93.9 0.58 1.3E-05 33.7 7.9 50 140-189 30-79 (116)
31 PF00957 Synaptobrevin: Synapt 93.8 1.4 3.1E-05 30.0 11.1 56 151-212 32-87 (89)
32 PF06160 EzrA: Septation ring 93.6 3.1 6.8E-05 38.4 14.3 81 9-93 251-333 (560)
33 PF06008 Laminin_I: Laminin Do 92.3 5.7 0.00012 32.9 17.9 54 5-58 54-112 (264)
34 PF09889 DUF2116: Uncharacteri 92.2 0.61 1.3E-05 29.5 5.3 31 181-211 26-56 (59)
35 KOG3065 SNAP-25 (synaptosome-a 90.4 2.1 4.5E-05 35.8 8.3 59 128-186 214-272 (273)
36 KOG0859 Synaptobrevin/VAMP-lik 90.1 1.4 3.1E-05 34.7 6.6 84 131-214 124-207 (217)
37 PF12911 OppC_N: N-terminal TM 89.3 0.52 1.1E-05 29.1 3.1 30 182-211 4-33 (56)
38 TIGR01294 P_lamban phospholamb 88.8 1.6 3.5E-05 25.7 4.6 29 185-213 22-50 (52)
39 PF04272 Phospholamban: Phosph 87.4 2.1 4.4E-05 25.3 4.5 27 187-213 24-50 (52)
40 PF08702 Fib_alpha: Fibrinogen 87.2 7.8 0.00017 29.2 8.8 47 1-49 23-69 (146)
41 KOG0862 Synaptobrevin/VAMP-lik 87.1 14 0.0003 29.6 10.8 65 132-196 134-198 (216)
42 PF07106 TBPIP: Tat binding pr 86.8 12 0.00026 28.7 10.7 50 31-80 110-159 (169)
43 PF09889 DUF2116: Uncharacteri 86.7 3 6.5E-05 26.4 5.3 33 185-217 27-59 (59)
44 PF10779 XhlA: Haemolysin XhlA 86.2 7.3 0.00016 25.4 8.9 22 190-211 47-68 (71)
45 KOG0994 Extracellular matrix g 84.6 48 0.001 33.5 15.3 6 14-19 1475-1480(1758)
46 PF12128 DUF3584: Protein of u 84.6 50 0.0011 33.7 18.5 8 168-175 526-533 (1201)
47 PHA03240 envelope glycoprotein 83.8 1.2 2.6E-05 35.5 3.1 20 197-216 214-233 (258)
48 PHA02650 hypothetical protein; 82.3 2.7 5.8E-05 28.0 3.8 21 198-218 54-74 (81)
49 PF06024 DUF912: Nucleopolyhed 81.7 0.94 2E-05 31.9 1.6 24 192-215 61-84 (101)
50 PF05478 Prominin: Prominin; 81.3 55 0.0012 31.8 23.9 89 126-214 336-433 (806)
51 COG3883 Uncharacterized protei 81.2 31 0.00066 28.8 14.3 70 34-104 35-105 (265)
52 PF00523 Fusion_gly: Fusion gl 80.9 0.83 1.8E-05 41.3 1.4 20 5-24 50-69 (490)
53 PF12352 V-SNARE_C: Snare regi 80.8 12 0.00026 23.7 8.0 62 119-180 2-63 (66)
54 PF12669 P12: Virus attachment 80.7 1 2.2E-05 28.4 1.3 8 211-218 15-22 (58)
55 PF15188 CCDC-167: Coiled-coil 80.2 16 0.00034 24.9 7.3 57 39-95 7-65 (85)
56 PF05961 Chordopox_A13L: Chord 79.9 2.7 5.8E-05 27.1 3.1 18 199-216 6-23 (68)
57 COG1256 FlgK Flagellar hook-as 78.9 22 0.00049 32.9 9.9 78 14-92 111-189 (552)
58 PF09753 Use1: Membrane fusion 78.8 35 0.00075 28.0 10.3 43 40-82 27-69 (251)
59 KOG4603 TBP-1 interacting prot 78.0 11 0.00024 29.2 6.4 57 37-93 86-143 (201)
60 PHA02844 putative transmembran 77.5 4.7 0.0001 26.5 3.7 19 200-218 55-73 (75)
61 PF01519 DUF16: Protein of unk 77.1 18 0.00038 25.5 6.7 38 153-190 60-97 (102)
62 PRK14762 membrane protein; Pro 76.9 3.1 6.6E-05 21.3 2.1 15 194-208 2-16 (27)
63 PHA02819 hypothetical protein; 76.7 5.3 0.00011 26.0 3.7 19 200-218 53-71 (71)
64 PHA03049 IMV membrane protein; 76.6 4 8.6E-05 26.2 3.1 18 199-216 6-23 (68)
65 PRK11519 tyrosine kinase; Prov 76.2 75 0.0016 30.4 14.2 53 38-90 275-328 (719)
66 PHA03164 hypothetical protein; 75.8 3.7 7.9E-05 27.1 2.9 20 195-214 61-80 (88)
67 COG3074 Uncharacterized protei 75.6 19 0.00042 23.4 8.9 17 3-19 4-20 (79)
68 PF07851 TMPIT: TMPIT-like pro 75.1 46 0.00099 28.7 10.1 26 3-28 4-29 (330)
69 PF08114 PMP1_2: ATPase proteo 74.6 3.9 8.5E-05 23.6 2.5 16 202-217 19-34 (43)
70 PF06008 Laminin_I: Laminin Do 74.4 48 0.001 27.3 16.0 79 7-89 91-169 (264)
71 PF06363 Picorna_P3A: Picornav 74.4 16 0.00034 25.2 5.7 45 175-219 50-94 (100)
72 PF10805 DUF2730: Protein of u 74.0 28 0.00062 24.6 7.9 56 37-92 35-91 (106)
73 PF12495 Vip3A_N: Vegetative i 73.5 22 0.00047 26.0 6.7 85 119-203 39-130 (177)
74 PF12575 DUF3753: Protein of u 73.3 5.8 0.00013 26.0 3.4 19 198-216 53-71 (72)
75 PRK11637 AmiB activator; Provi 73.2 67 0.0015 28.5 20.3 83 8-91 45-128 (428)
76 PF13800 Sigma_reg_N: Sigma fa 72.8 9.4 0.0002 26.3 4.7 27 181-207 3-29 (96)
77 PF01102 Glycophorin_A: Glycop 72.7 4.9 0.00011 29.4 3.2 19 195-213 68-86 (122)
78 PF05546 She9_MDM33: She9 / Md 72.6 48 0.001 26.5 17.2 47 2-55 4-50 (207)
79 PF04880 NUDE_C: NUDE protein, 71.2 8.1 0.00018 29.8 4.3 46 39-89 2-47 (166)
80 PTZ00382 Variant-specific surf 70.9 1.1 2.5E-05 31.2 -0.4 18 201-218 76-93 (96)
81 PRK10132 hypothetical protein; 69.8 37 0.00081 24.2 11.9 53 161-213 53-105 (108)
82 PF05283 MGC-24: Multi-glycosy 68.7 5.5 0.00012 31.3 3.0 26 193-218 159-185 (186)
83 KOG4674 Uncharacterized conser 68.6 1.7E+02 0.0037 31.3 19.0 65 127-191 400-464 (1822)
84 PF03302 VSP: Giardia variant- 68.6 2.7 6E-05 37.1 1.4 22 198-219 374-395 (397)
85 PRK10404 hypothetical protein; 68.5 37 0.00081 23.8 6.9 54 35-88 7-60 (101)
86 PF06072 Herpes_US9: Alphaherp 67.2 29 0.00062 21.9 5.4 14 177-190 9-22 (60)
87 PF14937 DUF4500: Domain of un 67.1 7.3 0.00016 26.4 2.9 25 192-216 35-59 (86)
88 PHA02975 hypothetical protein; 67.1 12 0.00026 24.2 3.7 19 199-217 50-68 (69)
89 PF03904 DUF334: Domain of unk 67.1 67 0.0015 26.1 16.4 29 143-171 110-138 (230)
90 PF02009 Rifin_STEVOR: Rifin/s 66.8 6.5 0.00014 33.3 3.3 9 4-12 51-59 (299)
91 PF10267 Tmemb_cc2: Predicted 66.4 95 0.002 27.5 18.0 28 37-64 212-239 (395)
92 PRK09841 cryptic autophosphory 65.6 1.3E+02 0.0028 28.8 14.8 52 38-89 275-327 (726)
93 PF06716 DUF1201: Protein of u 65.6 14 0.0003 22.0 3.5 19 196-214 10-28 (54)
94 PF15106 TMEM156: TMEM156 prot 64.8 8.6 0.00019 30.7 3.4 24 194-217 175-198 (226)
95 PHA03054 IMV membrane protein; 64.7 13 0.00028 24.2 3.6 17 200-216 55-71 (72)
96 PHA02692 hypothetical protein; 64.5 12 0.00026 24.3 3.4 17 200-216 53-69 (70)
97 KOG1693 emp24/gp25L/p24 family 64.3 34 0.00074 27.2 6.5 50 168-217 139-200 (209)
98 COG4575 ElaB Uncharacterized c 64.0 39 0.00084 23.9 6.1 11 75-85 50-60 (104)
99 KOG0250 DNA repair protein RAD 63.5 1.7E+02 0.0036 29.4 16.7 23 6-28 277-299 (1074)
100 PRK15422 septal ring assembly 63.2 43 0.00092 22.4 7.0 23 68-90 48-70 (79)
101 PF12777 MT: Microtubule-bindi 62.8 72 0.0016 27.5 9.1 92 126-217 229-327 (344)
102 TIGR01069 mutS2 MutS2 family p 62.4 71 0.0015 30.9 9.7 21 6-26 507-527 (771)
103 PRK09759 small toxic polypepti 61.7 7 0.00015 23.8 1.9 21 193-213 3-23 (50)
104 PF05399 EVI2A: Ectropic viral 61.6 11 0.00023 30.2 3.3 19 196-214 131-149 (227)
105 COG5415 Predicted integral mem 61.4 66 0.0014 25.8 7.7 33 161-193 16-48 (251)
106 COG4068 Uncharacterized protei 61.3 38 0.00083 21.3 5.1 24 180-203 30-53 (64)
107 PF06657 Cep57_MT_bd: Centroso 60.7 48 0.001 22.2 7.0 47 4-50 18-67 (79)
108 PF10717 ODV-E18: Occlusion-de 60.2 13 0.00029 25.0 3.1 11 204-214 34-44 (85)
109 PF06005 DUF904: Protein of un 59.8 47 0.001 21.8 8.2 24 39-62 6-29 (72)
110 PRK04778 septation ring format 59.8 1.5E+02 0.0032 27.6 18.8 42 52-93 294-337 (569)
111 PF06160 EzrA: Septation ring 59.7 1.5E+02 0.0032 27.5 17.6 54 36-90 378-431 (560)
112 PF05961 Chordopox_A13L: Chord 59.3 16 0.00034 23.6 3.2 22 195-216 5-26 (68)
113 PF11337 DUF3139: Protein of u 59.2 11 0.00023 25.5 2.7 11 194-204 5-15 (85)
114 PHA02902 putative IMV membrane 59.2 13 0.00027 23.8 2.7 7 193-199 4-10 (70)
115 PRK09738 small toxic polypepti 58.3 5.7 0.00012 24.4 1.1 21 193-213 5-25 (52)
116 PF04639 Baculo_E56: Baculovir 58.2 5.2 0.00011 33.4 1.2 21 195-215 280-300 (305)
117 PF06696 Strep_SA_rep: Strepto 58.2 25 0.00054 18.1 3.8 21 70-90 2-22 (25)
118 PF10146 zf-C4H2: Zinc finger- 58.1 1E+02 0.0022 25.1 8.9 21 71-91 79-99 (230)
119 PF04999 FtsL: Cell division p 57.5 32 0.00069 23.6 5.0 22 186-207 5-27 (97)
120 PTZ00046 rifin; Provisional 57.1 12 0.00026 32.5 3.2 11 3-13 70-80 (358)
121 PF04678 DUF607: Protein of un 57.1 90 0.002 24.2 9.2 20 194-213 92-111 (180)
122 PF00804 Syntaxin: Syntaxin; 56.9 58 0.0013 21.9 6.6 57 4-60 4-72 (103)
123 TIGR01010 BexC_CtrB_KpsE polys 56.7 1.3E+02 0.0028 25.9 14.8 52 39-90 179-231 (362)
124 PRK10132 hypothetical protein; 56.6 64 0.0014 23.0 6.4 19 7-25 16-34 (108)
125 PF04799 Fzo_mitofusin: fzo-li 56.6 89 0.0019 24.2 7.6 53 37-89 113-167 (171)
126 TIGR01477 RIFIN variant surfac 56.4 12 0.00027 32.3 3.1 8 212-219 331-338 (353)
127 COG5665 NOT5 CCR4-NOT transcri 56.4 1.4E+02 0.0031 26.3 13.7 55 31-85 26-80 (548)
128 PF12669 P12: Virus attachment 56.4 13 0.00028 23.3 2.5 20 196-215 3-22 (58)
129 PF10661 EssA: WXG100 protein 56.0 14 0.0003 27.8 3.1 7 98-104 70-76 (145)
130 cd02682 MIT_AAA_Arch MIT: doma 55.6 58 0.0013 21.6 6.7 46 44-89 24-70 (75)
131 PF11044 TMEMspv1-c74-12: Plec 55.4 30 0.00064 20.4 3.6 22 195-216 7-29 (49)
132 PF07139 DUF1387: Protein of u 55.0 1.3E+02 0.0028 25.6 8.9 76 11-88 154-233 (302)
133 PF03962 Mnd1: Mnd1 family; I 54.9 81 0.0018 24.8 7.4 60 33-92 65-129 (188)
134 PF14362 DUF4407: Domain of un 54.3 1.3E+02 0.0028 25.2 19.2 20 198-217 266-285 (301)
135 PF07106 TBPIP: Tat binding pr 54.2 96 0.0021 23.6 7.9 56 36-93 78-136 (169)
136 PF08802 CytB6-F_Fe-S: Cytochr 54.1 41 0.00088 19.3 5.0 25 184-208 4-28 (39)
137 PF13800 Sigma_reg_N: Sigma fa 53.0 33 0.00071 23.6 4.4 29 185-213 3-31 (96)
138 PF00558 Vpu: Vpu protein; In 52.7 16 0.00035 24.6 2.6 15 202-216 19-33 (81)
139 PF04065 Not3: Not1 N-terminal 52.1 1.3E+02 0.0028 24.6 17.7 59 10-68 8-73 (233)
140 KOG4433 Tweety transmembrane/c 52.1 1.2E+02 0.0026 27.5 8.6 41 120-160 115-155 (526)
141 PF09177 Syntaxin-6_N: Syntaxi 52.1 75 0.0016 21.8 8.7 86 5-90 3-94 (97)
142 PF09006 Surfac_D-trimer: Lung 52.1 45 0.00097 19.9 4.1 32 70-105 3-34 (46)
143 TIGR00606 rad50 rad50. This fa 51.9 2.9E+02 0.0064 28.6 19.9 27 67-93 882-908 (1311)
144 smart00511 ORANGE Orange domai 51.6 47 0.001 19.3 4.5 40 7-47 2-41 (45)
145 PF06459 RR_TM4-6: Ryanodine R 51.3 41 0.00088 28.2 5.4 35 180-217 160-194 (274)
146 PF15018 InaF-motif: TRP-inter 50.6 33 0.00072 19.6 3.3 18 200-217 14-31 (38)
147 PF01034 Syndecan: Syndecan do 50.3 5.4 0.00012 25.5 0.1 9 211-219 31-39 (64)
148 PF10168 Nup88: Nuclear pore c 50.3 2.4E+02 0.0053 27.2 14.8 28 69-96 635-662 (717)
149 PF05478 Prominin: Prominin; 50.0 2.6E+02 0.0055 27.3 19.7 75 132-208 357-431 (806)
150 KOG3202 SNARE protein TLG1/Syn 49.7 1.4E+02 0.0031 24.4 10.1 25 157-181 184-208 (235)
151 PRK13729 conjugal transfer pil 49.3 84 0.0018 28.5 7.3 56 36-92 68-123 (475)
152 PF08196 UL2: UL2 protein; In 49.2 31 0.00067 21.1 3.2 19 200-218 38-56 (60)
153 PHA02902 putative IMV membrane 49.2 36 0.00078 21.8 3.6 19 198-216 6-24 (70)
154 PF07361 Cytochrom_B562: Cytoc 49.0 82 0.0018 22.1 6.0 43 40-82 56-98 (103)
155 PF10183 ESSS: ESSS subunit of 49.0 24 0.00051 25.0 3.2 21 195-215 61-81 (105)
156 COG4396 Mu-like prophage host- 48.4 1.1E+02 0.0025 22.8 7.5 62 44-106 25-86 (170)
157 PF07527 Hairy_orange: Hairy O 48.0 53 0.0012 18.9 5.4 41 6-47 1-41 (43)
158 PF15168 TRIQK: Triple QxxK/R 47.9 46 0.00099 22.1 4.1 20 198-217 55-74 (79)
159 PHA02849 putative transmembran 47.6 32 0.0007 22.9 3.3 13 195-207 19-31 (82)
160 PF04799 Fzo_mitofusin: fzo-li 47.4 1.3E+02 0.0027 23.4 7.1 46 47-92 116-163 (171)
161 PF12729 4HB_MCP_1: Four helix 47.3 1.1E+02 0.0024 22.4 11.7 29 30-58 72-100 (181)
162 PRK10780 periplasmic chaperone 47.0 1.3E+02 0.0027 22.9 9.4 23 4-26 51-73 (165)
163 PF14283 DUF4366: Domain of un 46.9 4.7 0.0001 32.6 -0.8 14 206-219 172-185 (218)
164 PF13131 DUF3951: Protein of u 46.8 39 0.00084 20.6 3.3 15 205-219 16-30 (53)
165 PRK10884 SH3 domain-containing 46.6 1.5E+02 0.0033 23.7 13.8 32 183-214 158-189 (206)
166 PRK15422 septal ring assembly 46.6 87 0.0019 21.0 9.1 25 39-63 6-30 (79)
167 PTZ00046 rifin; Provisional 46.2 22 0.00047 30.9 3.1 8 212-219 336-343 (358)
168 PF00261 Tropomyosin: Tropomyo 45.7 1.6E+02 0.0035 23.8 14.0 53 124-176 182-234 (237)
169 PF06013 WXG100: Proteins of 1 45.7 79 0.0017 20.2 6.9 61 31-91 5-69 (86)
170 PRK11820 hypothetical protein; 45.5 1.9E+02 0.004 24.5 12.5 24 142-165 264-287 (288)
171 PF05008 V-SNARE: Vesicle tran 45.5 51 0.0011 21.5 4.3 9 41-49 36-44 (79)
172 PF11460 DUF3007: Protein of u 45.4 52 0.0011 23.3 4.3 14 60-73 87-100 (104)
173 PF10458 Val_tRNA-synt_C: Valy 45.4 79 0.0017 20.1 8.0 53 40-92 7-65 (66)
174 PHA03049 IMV membrane protein; 45.3 35 0.00077 21.9 3.2 22 195-216 5-26 (68)
175 PRK14585 pgaD putative PGA bio 45.1 41 0.00088 25.0 3.9 25 191-216 50-74 (137)
176 PHA02562 46 endonuclease subun 45.0 2.4E+02 0.0053 25.7 21.4 22 71-92 253-274 (562)
177 PF08855 DUF1825: Domain of un 44.8 1.1E+02 0.0025 21.8 7.4 54 5-59 10-63 (108)
178 PF12998 ING: Inhibitor of gro 44.5 78 0.0017 21.7 5.3 36 42-77 31-68 (105)
179 PF11298 DUF3099: Protein of u 44.4 91 0.002 20.5 5.2 30 182-211 9-38 (73)
180 KOG4603 TBP-1 interacting prot 44.4 1.5E+02 0.0033 23.1 11.4 73 20-92 106-178 (201)
181 TIGR03545 conserved hypothetic 44.0 1.3E+02 0.0028 28.0 7.9 24 5-28 166-189 (555)
182 TIGR01477 RIFIN variant surfac 43.7 25 0.00054 30.5 3.1 25 194-218 310-334 (353)
183 PRK05529 cell division protein 43.7 23 0.0005 29.2 2.8 23 183-205 24-46 (255)
184 KOG3564 GTPase-activating prot 43.2 1.8E+02 0.0039 26.6 8.2 15 77-91 88-102 (604)
185 PF02419 PsbL: PsbL protein; 43.1 53 0.0012 18.4 3.3 17 198-214 19-35 (37)
186 PF01102 Glycophorin_A: Glycop 42.9 34 0.00074 25.0 3.3 7 208-214 84-90 (122)
187 COG4640 Predicted membrane pro 42.8 29 0.00063 30.5 3.3 25 192-216 49-74 (465)
188 PF08113 CoxIIa: Cytochrome c 42.7 59 0.0013 17.9 3.9 15 200-214 14-28 (34)
189 PF01848 HOK_GEF: Hok/gef fami 42.5 16 0.00035 21.5 1.2 17 196-212 3-19 (43)
190 cd02677 MIT_SNX15 MIT: domain 42.0 99 0.0022 20.3 6.5 25 65-89 46-70 (75)
191 cd07912 Tweety_N N-terminal do 42.0 2.6E+02 0.0056 25.1 12.0 26 193-218 207-232 (418)
192 PF10805 DUF2730: Protein of u 42.0 1.2E+02 0.0026 21.3 6.0 25 39-63 67-91 (106)
193 KOG0933 Structural maintenance 41.9 3.8E+02 0.0082 27.0 20.4 57 134-190 831-887 (1174)
194 PF15188 CCDC-167: Coiled-coil 41.7 1.1E+02 0.0024 20.8 5.7 20 70-89 9-28 (85)
195 PF03938 OmpH: Outer membrane 41.3 1.5E+02 0.0032 22.1 9.6 55 4-58 44-101 (158)
196 KOG0161 Myosin class II heavy 41.3 5.1E+02 0.011 28.3 18.6 66 117-182 1849-1914(1930)
197 PRK01844 hypothetical protein; 41.0 37 0.00081 22.3 2.9 15 203-217 11-25 (72)
198 PRK10404 hypothetical protein; 40.9 1.3E+02 0.0027 21.2 11.1 34 179-212 65-98 (101)
199 PHA03099 epidermal growth fact 40.8 30 0.00064 25.5 2.6 11 209-219 118-128 (139)
200 PF07464 ApoLp-III: Apolipopho 40.7 1.6E+02 0.0035 22.4 14.2 143 12-186 5-148 (155)
201 PF03233 Cauli_AT: Aphid trans 40.4 1.7E+02 0.0037 22.5 6.9 46 46-91 113-160 (163)
202 PF01627 Hpt: Hpt domain; Int 40.4 1E+02 0.0022 19.9 8.9 62 3-65 1-67 (90)
203 PF15202 Adipogenin: Adipogeni 40.4 51 0.0011 21.4 3.3 22 196-217 18-39 (81)
204 PF04906 Tweety: Tweety; Inte 40.3 2.7E+02 0.0058 24.7 12.1 27 192-218 183-209 (406)
205 COG5185 HEC1 Protein involved 40.2 2.9E+02 0.0063 25.2 12.8 25 69-93 326-350 (622)
206 PRK00523 hypothetical protein; 40.0 37 0.00081 22.3 2.7 20 198-217 7-26 (72)
207 PF12409 P5-ATPase: P5-type AT 40.0 31 0.00067 24.8 2.7 20 193-212 15-34 (119)
208 PF06005 DUF904: Protein of un 39.9 1.1E+02 0.0023 20.1 7.3 22 1-22 1-23 (72)
209 PF04065 Not3: Not1 N-terminal 39.7 1.7E+02 0.0037 23.9 7.2 60 33-92 118-189 (233)
210 PF06103 DUF948: Bacterial pro 39.7 1.2E+02 0.0025 20.4 8.8 26 153-178 51-76 (90)
211 PRK11281 hypothetical protein; 39.7 4.3E+02 0.0094 27.0 19.1 35 152-186 291-325 (1113)
212 PF14914 LRRC37AB_C: LRRC37A/B 39.1 35 0.00077 25.7 2.9 11 189-199 115-125 (154)
213 PF04111 APG6: Autophagy prote 39.1 1.2E+02 0.0025 26.0 6.4 16 5-20 11-26 (314)
214 PHA03240 envelope glycoprotein 38.7 33 0.00071 27.6 2.8 16 195-210 215-231 (258)
215 PF11221 Med21: Subunit 21 of 38.5 1.7E+02 0.0036 21.8 10.7 93 1-93 1-124 (144)
216 PLN03094 Substrate binding sub 38.4 39 0.00084 29.6 3.5 32 185-216 77-108 (370)
217 PF10151 DUF2359: Uncharacteri 38.2 1.1E+02 0.0023 27.9 6.3 65 149-216 221-285 (469)
218 PRK11281 hypothetical protein; 38.2 4.6E+02 0.0099 26.8 16.3 25 69-93 83-107 (1113)
219 TIGR03521 GldG gliding-associa 38.1 54 0.0012 30.3 4.6 28 191-218 522-549 (552)
220 PF13253 DUF4044: Protein of u 38.1 75 0.0016 17.8 3.4 24 190-213 7-30 (35)
221 PRK15058 cytochrome b562; Prov 38.0 1.4E+02 0.003 22.0 5.8 15 7-21 82-96 (128)
222 KOG0250 DNA repair protein RAD 37.6 4.5E+02 0.0097 26.6 20.6 20 41-60 320-339 (1074)
223 KOG0996 Structural maintenance 37.4 4.7E+02 0.01 26.8 18.1 17 47-63 861-877 (1293)
224 PF13955 Fst_toxin: Toxin Fst, 37.2 56 0.0012 16.0 3.3 18 199-216 3-20 (21)
225 TIGR03142 cytochro_ccmI cytoch 36.7 1.6E+02 0.0034 21.0 6.5 17 200-216 98-114 (117)
226 PF09177 Syntaxin-6_N: Syntaxi 36.5 1.4E+02 0.003 20.4 7.5 53 40-92 8-65 (97)
227 PF11857 DUF3377: Domain of un 36.4 27 0.00058 23.1 1.7 14 200-213 39-52 (74)
228 PF14643 DUF4455: Domain of un 36.2 3.3E+02 0.0072 24.6 9.7 24 3-26 355-378 (473)
229 PF09125 COX2-transmemb: Cytoc 36.1 84 0.0018 17.7 3.6 11 193-203 14-24 (38)
230 PF09788 Tmemb_55A: Transmembr 36.0 33 0.00072 28.3 2.5 29 184-212 187-215 (256)
231 PHA03386 P10 fibrous body prot 36.0 1.3E+02 0.0027 20.9 4.9 26 152-177 35-60 (94)
232 KOG3838 Mannose lectin ERGIC-5 35.8 3.2E+02 0.0069 24.4 9.3 27 6-33 275-301 (497)
233 TIGR03017 EpsF chain length de 35.8 3.1E+02 0.0067 24.2 20.6 30 161-190 336-365 (444)
234 COG1422 Predicted membrane pro 35.6 2.3E+02 0.0049 22.6 10.6 37 145-181 57-93 (201)
235 COG3074 Uncharacterized protei 35.5 1.3E+02 0.0028 19.7 7.5 26 38-63 5-30 (79)
236 PF09716 ETRAMP: Malarial earl 35.5 1.1E+02 0.0025 20.5 4.8 20 180-199 40-59 (84)
237 cd02683 MIT_1 MIT: domain cont 35.1 1.3E+02 0.0029 19.8 6.5 27 65-91 46-72 (77)
238 PF12877 DUF3827: Domain of un 34.9 29 0.00063 32.5 2.2 68 147-219 225-296 (684)
239 TIGR01478 STEVOR variant surfa 34.8 51 0.0011 27.7 3.4 6 99-104 117-122 (295)
240 PRK14584 hmsS hemin storage sy 34.5 62 0.0013 24.6 3.6 24 192-216 60-83 (153)
241 PF15102 TMEM154: TMEM154 prot 34.5 17 0.00037 27.3 0.6 7 208-214 72-78 (146)
242 PF09577 Spore_YpjB: Sporulati 33.9 2.6E+02 0.0057 22.8 14.3 37 55-91 80-116 (232)
243 PF09011 HMG_box_2: HMG-box do 33.5 1.3E+02 0.0028 19.2 5.4 36 49-84 32-67 (73)
244 PF03962 Mnd1: Mnd1 family; I 33.5 2.4E+02 0.0051 22.1 10.4 88 5-93 71-162 (188)
245 KOG2911 Uncharacterized conser 33.4 3.6E+02 0.0078 24.2 12.5 44 139-182 313-356 (439)
246 KOG1656 Protein involved in gl 33.3 1.6E+02 0.0036 23.5 5.8 15 152-166 84-98 (221)
247 KOG4684 Uncharacterized conser 33.3 75 0.0016 25.6 4.0 26 182-207 197-222 (275)
248 PF14257 DUF4349: Domain of un 33.2 2.7E+02 0.0059 22.8 9.7 84 11-95 106-191 (262)
249 TIGR01000 bacteriocin_acc bact 33.1 2.4E+02 0.0053 25.2 7.9 26 38-63 237-262 (457)
250 PF07889 DUF1664: Protein of u 33.0 2E+02 0.0043 21.1 7.5 33 138-170 74-106 (126)
251 PRK00753 psbL photosystem II r 32.9 73 0.0016 18.0 2.8 16 198-213 21-36 (39)
252 PF08651 DASH_Duo1: DASH compl 32.8 1.5E+02 0.0033 19.7 6.5 35 155-189 3-37 (78)
253 PTZ00370 STEVOR; Provisional 32.7 58 0.0012 27.5 3.4 6 99-104 116-121 (296)
254 PRK10780 periplasmic chaperone 32.7 2.2E+02 0.0048 21.6 8.1 31 49-79 66-96 (165)
255 KOG3046 Transcription factor, 32.5 2.2E+02 0.0047 21.4 6.5 60 32-91 7-69 (147)
256 COG4499 Predicted membrane pro 32.5 54 0.0012 28.9 3.3 27 191-217 218-244 (434)
257 PF11119 DUF2633: Protein of u 32.4 69 0.0015 20.2 2.9 24 194-217 11-34 (59)
258 cd07625 BAR_Vps17p The Bin/Amp 32.4 2.8E+02 0.006 22.6 8.6 27 40-66 160-186 (230)
259 PF09403 FadA: Adhesion protei 32.4 2E+02 0.0044 21.1 9.8 27 67-93 87-113 (126)
260 PF05393 Hum_adeno_E3A: Human 32.3 79 0.0017 21.6 3.4 17 199-215 41-57 (94)
261 PF05659 RPW8: Arabidopsis bro 32.2 2.2E+02 0.0047 21.4 7.7 49 36-92 65-113 (147)
262 PF01105 EMP24_GP25L: emp24/gp 32.2 10 0.00022 28.7 -1.0 31 159-189 111-141 (183)
263 CHL00038 psbL photosystem II p 32.1 89 0.0019 17.6 3.0 16 198-213 20-35 (38)
264 KOG2736 Presenilin [Signal tra 32.1 63 0.0014 28.3 3.7 27 191-217 70-96 (406)
265 COG5074 t-SNARE complex subuni 32.1 2.9E+02 0.0063 22.7 16.8 36 129-164 196-231 (280)
266 PF02238 COX7a: Cytochrome c o 31.7 32 0.0007 21.4 1.4 27 189-215 22-48 (56)
267 cd07685 F-BAR_Fes The F-BAR (F 31.6 2.9E+02 0.0063 22.6 10.5 17 7-23 33-49 (237)
268 PRK14065 exodeoxyribonuclease 31.5 1.7E+02 0.0037 19.9 5.6 50 12-61 27-77 (86)
269 PF14712 Snapin_Pallidin: Snap 31.5 1.6E+02 0.0035 19.7 7.7 25 69-93 60-84 (92)
270 PF15339 Afaf: Acrosome format 31.5 1.5E+02 0.0032 23.1 5.2 32 186-217 128-159 (200)
271 PF02936 COX4: Cytochrome c ox 31.5 73 0.0016 23.9 3.6 24 192-215 73-96 (142)
272 PRK11546 zraP zinc resistance 31.5 2.3E+02 0.0049 21.3 6.7 22 69-90 92-113 (143)
273 PRK06665 flgK flagellar hook-a 31.5 4.5E+02 0.0098 24.8 12.2 59 32-91 138-196 (627)
274 PF10661 EssA: WXG100 protein 31.2 74 0.0016 23.9 3.6 10 205-214 129-138 (145)
275 PF11172 DUF2959: Protein of u 31.1 2.7E+02 0.0059 22.2 9.7 57 37-93 78-139 (201)
276 PRK07739 flgK flagellar hook-a 31.0 4.2E+02 0.009 24.2 12.1 73 18-91 123-196 (507)
277 TIGR01478 STEVOR variant surfa 30.9 42 0.0009 28.2 2.3 7 208-214 276-282 (295)
278 PF15012 DUF4519: Domain of un 30.7 18 0.00038 22.5 0.1 10 206-215 43-52 (56)
279 PF05454 DAG1: Dystroglycan (D 30.5 17 0.00036 30.7 0.0 14 205-218 161-174 (290)
280 TIGR00255 conserved hypothetic 30.4 3.4E+02 0.0073 23.0 13.6 63 15-78 133-195 (291)
281 KOG1094 Discoidin domain recep 30.2 53 0.0011 30.9 3.1 20 195-214 395-414 (807)
282 PF02532 PsbI: Photosystem II 30.0 1.1E+02 0.0023 17.2 3.4 13 192-204 3-15 (36)
283 PTZ00087 thrombosponding-relat 29.9 43 0.00094 27.9 2.3 19 197-215 303-321 (340)
284 TIGR02168 SMC_prok_B chromosom 29.9 5.7E+02 0.012 25.5 20.3 172 5-190 234-409 (1179)
285 COG4839 FtsL Protein required 29.8 1.6E+02 0.0034 21.4 4.8 22 193-214 37-58 (120)
286 PRK07521 flgK flagellar hook-a 29.7 4.3E+02 0.0093 24.0 12.1 69 22-91 110-179 (483)
287 PF06084 Cytomega_TRL10: Cytom 29.7 23 0.0005 25.4 0.6 8 207-214 74-81 (150)
288 PTZ00370 STEVOR; Provisional 29.3 46 0.00099 28.0 2.3 7 208-214 272-278 (296)
289 PF13314 DUF4083: Domain of un 29.3 84 0.0018 19.7 2.9 8 208-215 21-28 (58)
290 PF00505 HMG_box: HMG (high mo 29.3 1.4E+02 0.0031 18.4 6.0 39 49-87 28-66 (69)
291 PF15619 Lebercilin: Ciliary p 29.3 2.9E+02 0.0062 21.8 11.3 26 39-64 127-152 (194)
292 PF14071 YlbD_coat: Putative c 29.2 2.2E+02 0.0048 20.9 5.6 30 60-89 74-103 (124)
293 cd00922 Cyt_c_Oxidase_IV Cytoc 29.2 84 0.0018 23.3 3.6 22 194-215 75-96 (136)
294 PF03908 Sec20: Sec20; InterP 28.9 1.9E+02 0.0041 19.6 12.0 53 120-172 10-62 (92)
295 KOG0964 Structural maintenance 28.9 6.2E+02 0.013 25.6 18.9 181 6-190 674-863 (1200)
296 PF04834 Adeno_E3_14_5: Early 28.8 69 0.0015 22.4 2.8 13 204-216 35-47 (97)
297 PF05814 DUF843: Baculovirus p 28.8 79 0.0017 21.4 3.0 23 191-213 22-44 (83)
298 PF04212 MIT: MIT (microtubule 28.6 1.6E+02 0.0034 18.6 5.9 25 64-88 44-68 (69)
299 PF11057 Cortexin: Cortexin of 28.5 76 0.0016 21.0 2.8 17 200-216 35-51 (81)
300 PRK12659 putative monovalent c 28.5 89 0.0019 22.5 3.5 25 195-219 76-101 (117)
301 COG0342 SecD Preprotein transl 28.5 62 0.0013 29.7 3.3 26 192-217 342-367 (506)
302 PRK07191 flgK flagellar hook-a 28.2 4.4E+02 0.0096 23.7 11.8 76 16-92 109-185 (456)
303 PF13997 YqjK: YqjK-like prote 28.0 1.8E+02 0.0039 19.0 6.5 38 152-189 2-39 (73)
304 PF07851 TMPIT: TMPIT-like pro 27.9 1.6E+02 0.0036 25.4 5.5 29 32-60 63-91 (330)
305 PRK04778 septation ring format 27.8 5E+02 0.011 24.1 17.7 13 169-181 516-528 (569)
306 PF06120 Phage_HK97_TLTM: Tail 27.7 3.9E+02 0.0084 22.8 17.2 12 78-89 86-97 (301)
307 PHA03395 p10 fibrous body prot 27.5 2.1E+02 0.0045 19.6 4.9 27 150-176 39-65 (87)
308 PF05667 DUF812: Protein of un 27.5 5.3E+02 0.011 24.3 16.2 155 1-185 361-530 (594)
309 COG5052 YOP1 Protein involved 27.3 2.4E+02 0.0052 22.1 5.8 40 160-200 3-42 (186)
310 cd07669 BAR_SNX33 The Bin/Amph 27.2 1.9E+02 0.0041 23.2 5.4 55 39-93 7-61 (207)
311 PF02388 FemAB: FemAB family; 27.2 3.3E+02 0.0072 24.0 7.6 51 37-87 242-294 (406)
312 PF12958 DUF3847: Protein of u 27.2 2.1E+02 0.0045 19.5 6.3 46 157-202 5-53 (86)
313 PRK13718 conjugal transfer pro 27.2 1E+02 0.0022 20.6 3.2 22 196-217 50-71 (84)
314 MTH00158 ATP8 ATP synthase F0 27.1 1.1E+02 0.0025 16.4 3.6 22 193-214 8-29 (32)
315 KOG4075 Cytochrome c oxidase, 27.1 68 0.0015 24.7 2.7 33 184-216 90-122 (167)
316 KOG0946 ER-Golgi vesicle-tethe 27.0 6.2E+02 0.013 24.9 16.2 86 8-93 616-712 (970)
317 KOG3457 Sec61 protein transloc 26.8 59 0.0013 22.1 2.1 16 204-219 71-86 (88)
318 PRK06287 cobalt transport prot 26.7 93 0.002 22.1 3.3 21 196-216 80-100 (107)
319 cd07668 BAR_SNX9 The Bin/Amphi 26.7 2E+02 0.0043 23.1 5.4 55 39-93 7-61 (210)
320 PRK10856 cytoskeletal protein 26.6 45 0.00097 28.8 1.9 11 72-82 16-26 (331)
321 PF06103 DUF948: Bacterial pro 26.5 2E+02 0.0044 19.2 8.1 33 144-176 52-84 (90)
322 PF10280 Med11: Mediator compl 26.5 2.4E+02 0.0053 20.1 7.4 59 34-92 3-67 (117)
323 PF03961 DUF342: Protein of un 26.4 4.6E+02 0.0099 23.5 8.4 24 37-60 334-357 (451)
324 PRK00488 pheS phenylalanyl-tRN 26.2 4.4E+02 0.0094 22.9 8.8 34 53-86 39-72 (339)
325 PF01299 Lamp: Lysosome-associ 26.2 56 0.0012 27.6 2.4 9 206-214 285-293 (306)
326 PF10389 CoatB: Bacteriophage 26.1 74 0.0016 19.0 2.2 8 211-218 36-43 (46)
327 PF02609 Exonuc_VII_S: Exonucl 26.1 1.6E+02 0.0034 17.8 6.4 46 14-59 3-49 (53)
328 cd02678 MIT_VPS4 MIT: domain c 26.1 1.9E+02 0.0041 18.7 6.5 28 64-91 45-72 (75)
329 PF03993 DUF349: Domain of Unk 26.1 1.8E+02 0.0039 18.5 5.3 46 8-61 3-48 (77)
330 PRK09720 cybC cytochrome b562; 26.0 2.4E+02 0.0052 19.8 5.8 17 5-21 52-68 (100)
331 PF10256 Erf4: Golgin subfamil 25.8 2.1E+02 0.0046 20.2 5.1 14 198-211 60-73 (118)
332 PRK10697 DNA-binding transcrip 25.7 1.5E+02 0.0033 21.4 4.3 34 32-65 76-109 (118)
333 TIGR02284 conserved hypothetic 25.7 2.8E+02 0.006 20.5 12.1 122 40-171 3-137 (139)
334 PF13198 DUF4014: Protein of u 25.6 1.7E+02 0.0036 19.2 3.9 17 186-202 9-25 (72)
335 PF08135 EPV_E5: Major transfo 25.6 95 0.0021 18.0 2.5 12 203-214 21-32 (44)
336 PF09748 Med10: Transcription 25.2 2.6E+02 0.0056 20.4 5.5 48 43-90 2-50 (128)
337 PF04678 DUF607: Protein of un 25.0 3.3E+02 0.0071 21.1 9.8 65 147-214 51-115 (180)
338 cd02656 MIT MIT: domain contai 25.0 2E+02 0.0042 18.5 6.3 28 63-90 44-71 (75)
339 PF00435 Spectrin: Spectrin re 24.9 2E+02 0.0044 18.7 10.8 86 5-90 3-97 (105)
340 PF08999 SP_C-Propep: Surfacta 24.9 1.8E+02 0.0039 19.6 4.1 18 196-213 38-55 (93)
341 PF03554 Herpes_UL73: UL73 vir 24.9 1.1E+02 0.0024 20.7 3.1 18 198-215 52-69 (82)
342 TIGR01906 integ_TIGR01906 inte 24.8 1.1E+02 0.0024 24.4 3.8 40 180-219 168-207 (207)
343 PF15361 RIC3: Resistance to i 24.8 75 0.0016 24.1 2.6 18 198-218 89-106 (152)
344 PF05781 MRVI1: MRVI1 protein; 24.7 2.7E+02 0.0058 25.8 6.5 25 33-57 251-275 (538)
345 PF14899 DUF4492: Domain of un 24.6 1.4E+02 0.0031 19.1 3.4 19 196-214 20-38 (64)
346 PF05084 GRA6: Granule antigen 24.6 1.1E+02 0.0023 23.6 3.4 19 188-206 146-164 (215)
347 KOG4025 Putative apoptosis rel 24.5 3.4E+02 0.0073 21.1 8.4 79 5-89 88-169 (207)
348 COG1033 Predicted exporters of 24.4 1.3E+02 0.0028 29.0 4.7 68 142-217 526-593 (727)
349 PF05531 NPV_P10: Nucleopolyhe 24.4 2.2E+02 0.0048 18.9 5.3 27 151-177 40-66 (75)
350 PF09602 PhaP_Bmeg: Polyhydrox 24.3 3.4E+02 0.0073 21.0 8.8 18 43-60 47-64 (165)
351 PF11174 DUF2970: Protein of u 24.2 1.5E+02 0.0032 18.4 3.4 19 195-213 33-51 (56)
352 PRK15366 type III secretion sy 24.2 2.3E+02 0.0049 18.9 5.6 9 210-218 63-71 (80)
353 PF05115 PetL: Cytochrome B6-F 24.0 1.3E+02 0.0029 16.3 3.5 22 195-216 4-25 (31)
354 cd01145 TroA_c Periplasmic bin 24.0 3.1E+02 0.0067 21.4 6.2 44 49-92 117-160 (203)
355 cd00928 Cyt_c_Oxidase_VIIa Cyt 24.0 1.7E+02 0.0037 18.1 3.6 24 191-214 26-49 (55)
356 KOG3287 Membrane trafficking p 24.0 3.7E+02 0.0081 21.8 6.4 37 161-197 154-190 (236)
357 PF01405 PsbT: Photosystem II 23.9 91 0.002 16.6 2.1 6 198-203 6-11 (29)
358 PF13396 PLDc_N: Phospholipase 23.9 64 0.0014 18.7 1.7 25 194-218 21-45 (46)
359 PF15183 MRAP: Melanocortin-2 23.7 1.2E+02 0.0027 20.5 3.1 8 197-204 42-49 (90)
360 PRK12660 putative monovalent c 23.7 1.2E+02 0.0026 21.8 3.4 24 195-218 73-97 (114)
361 PRK09458 pspB phage shock prot 23.6 1.1E+02 0.0025 20.2 3.0 9 206-214 14-22 (75)
362 PF07010 Endomucin: Endomucin; 23.6 1E+02 0.0022 25.1 3.2 23 195-217 189-211 (259)
363 KOG0810 SNARE protein Syntaxin 23.5 4.6E+02 0.01 22.3 17.4 24 39-62 84-107 (297)
364 PHA02662 ORF131 putative membr 23.5 99 0.0021 25.0 3.2 11 61-71 88-98 (226)
365 cd02684 MIT_2 MIT: domain cont 23.5 2.2E+02 0.0048 18.6 6.4 28 63-90 44-71 (75)
366 PF12761 End3: Actin cytoskele 23.4 3.4E+02 0.0075 21.5 6.1 24 39-62 98-121 (195)
367 PF01297 TroA: Periplasmic sol 23.4 3.5E+02 0.0077 21.8 6.7 41 53-93 105-145 (256)
368 PF11657 Activator-TraM: Trans 23.3 3.3E+02 0.0071 20.5 14.4 11 79-89 45-55 (144)
369 PF11026 DUF2721: Protein of u 23.3 3E+02 0.0065 20.0 7.1 20 180-199 49-69 (130)
370 PRK06007 fliF flagellar MS-rin 23.1 1E+02 0.0022 28.5 3.7 22 197-218 442-463 (542)
371 MTH00260 ATP8 ATP synthase F0 22.9 1.8E+02 0.004 17.7 3.7 21 194-214 9-29 (53)
372 COG0598 CorA Mg2+ and Co2+ tra 22.8 4.7E+02 0.01 22.1 20.4 47 43-92 153-199 (322)
373 PRK10633 hypothetical protein; 22.6 1.5E+02 0.0033 19.9 3.5 7 211-217 63-69 (80)
374 PF03904 DUF334: Domain of unk 22.5 4.3E+02 0.0093 21.5 8.8 44 53-96 99-143 (230)
375 PRK05729 valS valyl-tRNA synth 22.5 4.9E+02 0.011 25.7 8.4 57 36-92 810-872 (874)
376 KOG4812 Golgi-associated prote 22.3 1.1E+02 0.0024 25.1 3.2 20 199-218 230-249 (262)
377 PF09813 Coiled-coil_56: Coile 22.2 1.4E+02 0.0031 20.9 3.4 22 191-212 48-69 (100)
378 KOG0933 Structural maintenance 22.2 8.3E+02 0.018 24.8 16.6 39 68-106 908-950 (1174)
379 cd07670 BAR_SNX18 The Bin/Amph 22.0 2.9E+02 0.0062 22.2 5.5 55 39-93 7-61 (207)
380 smart00745 MIT Microtubule Int 21.9 2.3E+02 0.005 18.1 6.1 27 64-90 47-73 (77)
381 KOG0612 Rho-associated, coiled 21.8 9E+02 0.02 25.0 16.2 45 126-170 585-629 (1317)
382 PF10779 XhlA: Haemolysin XhlA 21.7 2.3E+02 0.0051 18.2 5.9 23 70-92 31-53 (71)
383 PF11353 DUF3153: Protein of u 21.7 1.2E+02 0.0027 24.0 3.5 18 194-211 184-201 (209)
384 PF15290 Syntaphilin: Golgi-lo 21.6 5E+02 0.011 22.0 8.7 97 3-101 82-180 (305)
385 PRK15041 methyl-accepting chem 21.6 6.3E+02 0.014 23.2 15.9 22 36-57 88-109 (554)
386 CHL00106 petL cytochrome b6/f 21.6 1.5E+02 0.0033 16.0 3.3 21 195-215 4-24 (31)
387 PRK09609 hypothetical protein; 21.5 1E+02 0.0022 26.3 3.1 30 190-219 203-233 (312)
388 TIGR02978 phageshock_pspC phag 21.5 2E+02 0.0044 20.9 4.3 33 33-65 80-112 (121)
389 PF10856 DUF2678: Protein of u 21.5 54 0.0012 23.7 1.2 19 197-215 65-83 (118)
390 PF07240 Turandot: Stress-indu 21.5 2.7E+02 0.0058 19.0 4.5 37 44-80 7-45 (85)
391 PF11877 DUF3397: Protein of u 21.4 2.7E+02 0.0058 19.8 4.9 33 182-214 46-78 (116)
392 PRK09731 putative general secr 21.2 1.5E+02 0.0033 23.1 3.8 23 191-213 34-57 (178)
393 COG2433 Uncharacterized conser 20.9 7.2E+02 0.016 23.5 9.0 24 70-93 485-508 (652)
394 PHA02955 hypothetical protein; 20.9 1.2E+02 0.0026 24.4 3.2 27 41-74 62-88 (213)
395 KOG3838 Mannose lectin ERGIC-5 20.8 4.2E+02 0.009 23.7 6.6 36 67-102 273-310 (497)
396 PRK10299 PhoPQ regulatory prot 20.5 1.3E+02 0.0028 18.0 2.4 6 199-204 11-16 (47)
397 PF04995 CcmD: Heme exporter p 20.5 2E+02 0.0042 16.8 3.4 14 198-211 11-24 (46)
398 PRK10772 cell division protein 20.4 2.1E+02 0.0045 20.4 4.0 26 184-209 13-39 (108)
399 PF00038 Filament: Intermediat 20.3 5.1E+02 0.011 21.6 20.6 89 2-90 46-141 (312)
400 PF01496 V_ATPase_I: V-type AT 20.2 4.9E+02 0.011 25.1 7.8 32 33-64 225-256 (759)
401 PF08006 DUF1700: Protein of u 20.1 2.4E+02 0.0052 21.6 4.8 25 50-74 4-28 (181)
402 PF11712 Vma12: Endoplasmic re 20.1 1.5E+02 0.0032 22.0 3.4 27 192-218 110-136 (142)
No 1
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.8e-49 Score=303.79 Aligned_cols=216 Identities=48% Similarity=0.762 Sum_probs=205.0
Q ss_pred CchhHHHHHHHHHHHHHHHHHhhhhhcCCCChhHHHHHHHHHHchHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHH
Q 047357 1 MSEVFEGYERQYCELSTNLSRKCSSASLLPDGDQKKEKYSEIQSGLDDADALIRKMDLEARSLQPNVKAMLLAKLREYKS 80 (219)
Q Consensus 1 Ms~~f~~ye~e~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~m~~E~~~~~~~~r~~~~~k~~~~~~ 80 (219)
||+.|++||++|+.+..+|..+++.+++. ++++++..+++++..+++|++++++|++|++.+||+.|..|..|++.|++
T Consensus 1 ms~~fe~yEqqy~~l~a~it~k~~~~~~~-~~~ekk~~l~~i~~~leEa~ell~qMdlEvr~lp~~~Rs~~~~KlR~yks 79 (220)
T KOG1666|consen 1 MSSLFEGYEQQYRELSAEITKKIGRALSL-PGSEKKQLLSEIDSKLEEANELLDQMDLEVRELPPNFRSSYLSKLREYKS 79 (220)
T ss_pred CchHHHHHHHHHHHHHHHHHHhHHHHhcC-CchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCchhhhHHHHHHHHHHH
Confidence 89999999999999999999999999999 68999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcch----hhHhhhccCCCCCCCCCCHHHHHHHHhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047357 81 DLNKLKREFKRVSSS----DAHEELLESGKADPNVVSGEQRERLAMSVERINQSGERIRESRRVMLETEELGISIVEDLN 156 (219)
Q Consensus 81 ~l~~l~~~~~~~~~~----~~r~~L~~~~~~~~~~~~~~~r~~l~~~~~~l~~~~~~L~~s~~~~~ete~~g~~i~~~L~ 156 (219)
+++.+++++++.... .+|+++++....+....+.+||++|+++++.+.+++++|.+++|++.|||+||.+|+++|+
T Consensus 80 dl~~l~~e~k~~~~~~~~~~~rde~~~~~~add~~~~~dQR~rLl~nTerLeRst~rl~ds~Ria~ETEqIG~~IL~dL~ 159 (220)
T KOG1666|consen 80 DLKKLKRELKRTTSRNLNAGDRDELLEALEADDQNISADQRARLLQNTERLERSTDRLKDSQRIALETEQIGSEILEDLH 159 (220)
T ss_pred HHHHHHHHHHHhhccccccchHHHHHhhhhccccccchhHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988732 2788888775444444578999999999999999999999999999999999999999999
Q ss_pred HhhHHHHHhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 047357 157 QQRETLLNSRNKLHGVDDAISKSKKVLSSMSRRMTRNKWIVGSIIVALVIAIIFILFYKLS 217 (219)
Q Consensus 157 ~Qre~L~~~~~~~~~i~~~l~~s~~~l~~m~rr~~~dk~Il~~ii~~l~~~i~~vi~~k~~ 217 (219)
.||++|++++..+.+++++|++|+++++.|.||+.+|||++++||++++++|++++|+||+
T Consensus 160 ~QRe~L~rar~rL~~td~~lgkS~kiL~tM~RR~~~nk~~~~aii~~l~~~il~ilY~kf~ 220 (220)
T KOG1666|consen 160 GQREQLERARERLRETDANLGKSRKILTTMTRRLIRNKFTLTAIIALLVLAILLILYSKFT 220 (220)
T ss_pred HHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999985
No 2
>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=9.7e-22 Score=153.25 Aligned_cols=202 Identities=15% Similarity=0.225 Sum_probs=159.7
Q ss_pred CchhHHHHHHHHHHHHHHHHHhhhhhcCCCChhHHHHHHHHHHchHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHH
Q 047357 1 MSEVFEGYERQYCELSTNLSRKCSSASLLPDGDQKKEKYSEIQSGLDDADALIRKMDLEARSLQPNVKAMLLAKLREYKS 80 (219)
Q Consensus 1 Ms~~f~~ye~e~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~m~~E~~~~~~~~r~~~~~k~~~~~~ 80 (219)
|+.+|.+-... ++++...+.++++.....+....+.++...|.++...+..|+.-+...||+.|..-.-++.+.+.
T Consensus 1 m~~ly~~t~~~----~~k~q~~l~rlE~~~~~~e~~~v~~~i~~sI~~~~s~~~rl~~~~~~epp~~rq~~rlr~dQl~~ 76 (213)
T KOG3251|consen 1 MDALYQSTNRQ----LDKLQRGLIRLERTIKTQEVSAVENSIQRSIDQYASRCQRLDVLVSKEPPKSRQAARLRVDQLLE 76 (213)
T ss_pred CchHHHHHHHH----HHHHHHHHHHHHccccccchHHHHHHHHHhHHHHHHHHHHHHhHhhcCCCCcHHHHHHHHHHHHH
Confidence 66677665554 45556666677665233677788999999999999999999999999999887766666999999
Q ss_pred HHHHHHHHHHhhcch--------hhHhhhccCCCCCCCCCCHHHHHHHHhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 047357 81 DLNKLKREFKRVSSS--------DAHEELLESGKADPNVVSGEQRERLAMSVERINQSGERIRESRRVMLETEELGISIV 152 (219)
Q Consensus 81 ~l~~l~~~~~~~~~~--------~~r~~L~~~~~~~~~~~~~~~r~~l~~~~~~l~~~~~~L~~s~~~~~ete~~g~~i~ 152 (219)
++..++..++..... .+|.+|+++.+........-..+..++.+ +.|.+|++++++....|.+|+
T Consensus 77 d~~~l~~~l~~~~~R~~~r~~~~~er~~lL~~~~~~~~~~~~~~~D~el~~~-------d~l~~s~~~lDd~l~~G~~il 149 (213)
T KOG3251|consen 77 DVEHLQTSLRTSMNRNNRREQQARERVELLDRRFTNGATGTSIPFDEELQEN-------DSLKRSHNMLDDLLESGSAIL 149 (213)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCCCCccCCCcchHHHHhh-------hHHHHHHhhHHHHHHHHHHHH
Confidence 999999988877543 27788887754321111111133333333 477889999999999999999
Q ss_pred HHHHHhhHHHHHhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047357 153 EDLNQQRETLLNSRNKLHGVDDAISKSKKVLSSMSRRMTRNKWIVGSIIVALVIAIIFILF 213 (219)
Q Consensus 153 ~~L~~Qre~L~~~~~~~~~i~~~l~~s~~~l~~m~rr~~~dk~Il~~ii~~l~~~i~~vi~ 213 (219)
++|.+||-.|.++++++.++...|+.|+.+|+.|.||.+.||+|+|+++++|+++++++++
T Consensus 150 e~l~~Q~~~L~~~~~ki~~~~ntLGlSn~ti~lIeRR~~~Dk~iF~~G~i~~~v~~yl~~~ 210 (213)
T KOG3251|consen 150 ENLVEQRLTLKGTQKKILDILNTLGLSNQTIRLIERRVREDKIIFYGGVILTLVIMYLFYR 210 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999988887777655533
No 3
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=7e-22 Score=153.71 Aligned_cols=201 Identities=24% Similarity=0.292 Sum_probs=163.3
Q ss_pred CchhHHHHHHHHHHHHHHHHHhhhhhcCCC-C-------------h--hHHHHHHHHHHchHHHHHHHHHHHHHHHhcCC
Q 047357 1 MSEVFEGYERQYCELSTNLSRKCSSASLLP-D-------------G--DQKKEKYSEIQSGLDDADALIRKMDLEARSLQ 64 (219)
Q Consensus 1 Ms~~f~~ye~e~~~~~~~i~~~l~~~~~~~-~-------------~--~~~~~~~~~~~~~l~~a~~~~~~m~~E~~~~~ 64 (219)
|++.|+..+.+.+++..+++.++..+.+.. . + ..-+..-.+++..|+++.++.++|.. +...|
T Consensus 3 ~~s~we~LRkqArslE~~ld~kL~syskl~as~~gg~~~~~s~~~~~~~s~ks~~~eie~LLeql~~vndsm~~-~~~s~ 81 (231)
T KOG3208|consen 3 SSSSWEALRKQARSLENQLDSKLVSYSKLGASTHGGYDIDTSPLSGSDRSFKSLENEIEGLLEQLQDVNDSMND-CASSP 81 (231)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccCcCcchhhhHHHHHHHHHHHHHHHHHHHh-hccCC
Confidence 568999999999999999999998875430 1 1 13356678899999999999999998 44444
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhcchh----hHhhhccCCCCCC---CCC-CHHHHHHHHhhHHHhhhhhHHHHH
Q 047357 65 PNVKAMLLAKLREYKSDLNKLKREFKRVSSSD----AHEELLESGKADP---NVV-SGEQRERLAMSVERINQSGERIRE 136 (219)
Q Consensus 65 ~~~r~~~~~k~~~~~~~l~~l~~~~~~~~~~~----~r~~L~~~~~~~~---~~~-~~~~r~~l~~~~~~l~~~~~~L~~ 136 (219)
.+ -+.....+++|++.|.++..+|++.+..+ +|+.|++++..+. +.. +...+ +.+.+..++|++
T Consensus 82 a~-~aa~~htL~RHrEILqdy~qef~rir~n~~a~~e~~~Ll~s~~~~~~~~~~~~~~~~~-------e~~lkE~~~in~ 153 (231)
T KOG3208|consen 82 AN-SAAVMHTLQRHREILQDYTQEFRRIRSNIDAKRERESLLESVRADISSYPSASGFNRG-------EMYLKEHDHINN 153 (231)
T ss_pred CC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCccCCCchH-------HHHHHHhccccc
Confidence 32 25788999999999999999999988754 7788887754332 111 11111 334455568899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047357 137 SRRVMLETEELGISIVEDLNQQRETLLNSRNKLHGVDDAISKSKKVLSSMSRRMTRNKWIVGSIIVALVIAIIF 210 (219)
Q Consensus 137 s~~~~~ete~~g~~i~~~L~~Qre~L~~~~~~~~~i~~~l~~s~~~l~~m~rr~~~dk~Il~~ii~~l~~~i~~ 210 (219)
+.++++++..+|.++.++|..||..|.+++.++..+...+|..+.+|.+|++|..+|.+|+.+||.+|+++++|
T Consensus 154 s~~~vde~Is~A~aTre~l~~Qrs~l~~i~~k~~~~a~r~P~IN~Ll~kIk~kkrrdslILa~Vis~C~llllf 227 (231)
T KOG3208|consen 154 SIRLVDELISQAQATRENLHSQRSVLGGINNKVNNIANRFPAINQLLQKIKIKKRRDSLILAAVISVCTLLLLF 227 (231)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999766543
No 4
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=99.59 E-value=2.3e-14 Score=97.41 Aligned_cols=79 Identities=38% Similarity=0.659 Sum_probs=73.7
Q ss_pred HHHHHHHHHHhhhhhcCCCChhHHHHHHHHHHchHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047357 12 YCELSTNLSRKCSSASLLPDGDQKKEKYSEIQSGLDDADALIRKMDLEARSLQPNVKAMLLAKLREYKSDLNKLKREFKR 91 (219)
Q Consensus 12 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~~l~~~~~~ 91 (219)
|..+..+|.++++.++.. +|++|+..++.++..|++|++++++|+.|++++|++.|..|..+++.|+.+++.++++|++
T Consensus 1 f~~l~~~i~~~l~~~~~~-~~~~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk~~l~~ 79 (79)
T PF05008_consen 1 FQALTAEIKSKLERIKNL-SGEQRKSLIREIERDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKLKKELKK 79 (79)
T ss_dssp HHHHHHHHHHHHHHGGGS--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 678999999999999988 6799999999999999999999999999999999999999999999999999999999864
No 5
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=99.54 E-value=4.5e-14 Score=92.68 Aligned_cols=65 Identities=38% Similarity=0.605 Sum_probs=61.7
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhHhHHHHHHHHHHHHHHH
Q 047357 126 RINQSGERIRESRRVMLETEELGISIVEDLNQQRETLLNSRNKLHGVDDAISKSKKVLSSMSRRM 190 (219)
Q Consensus 126 ~l~~~~~~L~~s~~~~~ete~~g~~i~~~L~~Qre~L~~~~~~~~~i~~~l~~s~~~l~~m~rr~ 190 (219)
.+.+++++|++|.++++|++++|.+|+.+|..||++|.++.+++.++++.++.|+++|+.|.||.
T Consensus 2 ~l~~e~~~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s~~~l~~I~rR~ 66 (66)
T PF12352_consen 2 RLLRESDSLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKSNSLLKRISRRK 66 (66)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHccC
Confidence 46777889999999999999999999999999999999999999999999999999999999984
No 6
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=99.41 E-value=6.4e-12 Score=87.79 Aligned_cols=86 Identities=20% Similarity=0.404 Sum_probs=80.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047357 130 SGERIRESRRVMLETEELGISIVEDLNQQRETLLNSRNKLHGVDDAISKSKKVLSSMSRRMTRNKWIVGSIIVALVIAII 209 (219)
Q Consensus 130 ~~~~L~~s~~~~~ete~~g~~i~~~L~~Qre~L~~~~~~~~~i~~~l~~s~~~l~~m~rr~~~dk~Il~~ii~~l~~~i~ 209 (219)
-+..|.++++++.+..+.|..+++.|.+|+++|..+++..+++.+.+..|+++++.+.|+..+||+++++.++++++.++
T Consensus 6 vT~~L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~~~~D~~li~~~~~~f~~~v~ 85 (92)
T PF03908_consen 6 VTESLRRTRQMMAQEVERSELTLQTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLERRDKTDRILIFFAFLFFLLVVL 85 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999888887
Q ss_pred HHHHHh
Q 047357 210 FILFYK 215 (219)
Q Consensus 210 ~vi~~k 215 (219)
+|+|.+
T Consensus 86 yI~~rR 91 (92)
T PF03908_consen 86 YILWRR 91 (92)
T ss_pred HHhhhc
Confidence 777754
No 7
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.90 E-value=1.6e-06 Score=70.07 Aligned_cols=188 Identities=15% Similarity=0.219 Sum_probs=121.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcCC-CC----hhHHHHHHH-HHHchHHHHHHHHHHHHHHHhc--CChhHHHHHHHHHH
Q 047357 5 FEGYERQYCELSTNLSRKCSSASLL-PD----GDQKKEKYS-EIQSGLDDADALIRKMDLEARS--LQPNVKAMLLAKLR 76 (219)
Q Consensus 5 f~~ye~e~~~~~~~i~~~l~~~~~~-~~----~~~~~~~~~-~~~~~l~~a~~~~~~m~~E~~~--~~~~~r~~~~~k~~ 76 (219)
|-.-..|...+.+++...+.+...+ ++ .++....+. .++..+..+++.+.-++.-... .|..+-..-...+.
T Consensus 8 ~~~v~~e~~k~~~~~~~~~~r~~~~~~~~~~~~~~~t~~lr~~i~~~~edl~~~~~il~~~~~~~~ide~El~~R~~~i~ 87 (235)
T KOG3202|consen 8 FFRVKNETLKLSEEIQGLYQRRSELLKDTGSDAEELTSVLRRSIEEDLEDLDELISILERNPSKFGIDEFELSRRRRFID 87 (235)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHHHHHHHHHHHHHHHhCcccccCcHHHHHHHHHHHH
Confidence 3333347888888888888776432 12 233344444 5555555555555544432221 12222334455567
Q ss_pred HHHHHHHHHHHHHHhhcchh--hHhhhccCCCCCC-------CCCCHHHHHHHHhhHHHhhhhhHHHHHHHHHHHHHHHH
Q 047357 77 EYKSDLNKLKREFKRVSSSD--AHEELLESGKADP-------NVVSGEQRERLAMSVERINQSGERIRESRRVMLETEEL 147 (219)
Q Consensus 77 ~~~~~l~~l~~~~~~~~~~~--~r~~L~~~~~~~~-------~~~~~~~r~~l~~~~~~l~~~~~~L~~s~~~~~ete~~ 147 (219)
+.+..+..++..|....... .|..|++....+. ..+.+............+..+...|+.....+....++
T Consensus 88 ~lr~q~~~~~~~~~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~~~~D~v~~~~~~qqqm~~eQDe~Ld~ls~ti~rlk~~ 167 (235)
T KOG3202|consen 88 NLRTQLRQMKSKMAMSGFANSNIRDILLGPEKSPNLDEAMSRASGLDNVQEIVQLQQQMLQEQDEGLDGLSATVQRLKGM 167 (235)
T ss_pred HHHHHHHHHHHHHHhhccccccchhhhcCCCCCCchhhhHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77778888888887643332 3777776643221 01111111111123345667778999999999999999
Q ss_pred HHHHHHHHHHhhHHHHHhhhhhhhhhHhHHHHHHHHHHHHHHHHHH
Q 047357 148 GISIVEDLNQQRETLLNSRNKLHGVDDAISKSKKVLSSMSRRMTRN 193 (219)
Q Consensus 148 g~~i~~~L~~Qre~L~~~~~~~~~i~~~l~~s~~~l~~m~rr~~~d 193 (219)
|..+.++|..|...|......++.+++.|....+-+..|.+ +..+
T Consensus 168 a~~~g~EL~~Q~~llDdl~~e~d~t~srl~~~~~~l~~v~~-~~s~ 212 (235)
T KOG3202|consen 168 ALAMGEELEEQGRLLDDLDNEMDRTESRLDRVMKRLAKVNR-MASQ 212 (235)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcc
Confidence 99999999999999999999999999999999999999999 4433
No 8
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.55 E-value=0.00011 Score=60.26 Aligned_cols=86 Identities=16% Similarity=0.242 Sum_probs=73.4
Q ss_pred HHHhhH-HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHH
Q 047357 119 RLAMSV-ERINQSGERIRESRRVMLETEELGISIVEDLNQQRETLLNSRNKLHGVDDAISKSKKVLSSMSRRMTRNKWIV 197 (219)
Q Consensus 119 ~l~~~~-~~l~~~~~~L~~s~~~~~ete~~g~~i~~~L~~Qre~L~~~~~~~~~i~~~l~~s~~~l~~m~rr~~~dk~Il 197 (219)
.++.+. ++...-...+.+....+.|.-+|=.++..-...|.|.++++++++++++-+++.|...|-+.--|+..|+|.+
T Consensus 213 ~ll~es~~Y~Q~R~~~~q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~nv~ds~lnI~gA~~ellKy~e~vSSNRwLm 292 (311)
T KOG0812|consen 213 ALLDESDEYVQERAKTMQNIESTISELGGIFQQLASMVSEQEETIQRIDDNVDDSDLNIEGAHSELLKYFERVSSNRWLM 292 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHhccchHHH
Confidence 445544 5555556777888888888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 047357 198 GSIIVAL 204 (219)
Q Consensus 198 ~~ii~~l 204 (219)
+=|++++
T Consensus 293 vkiF~i~ 299 (311)
T KOG0812|consen 293 VKIFGIL 299 (311)
T ss_pred HHHHHHH
Confidence 7665543
No 9
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=98.42 E-value=8e-05 Score=61.47 Aligned_cols=83 Identities=16% Similarity=0.202 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 047357 133 RIRESRRVMLETEELGISIVEDLNQQRETLLNSRNKLHGVDDAISKSKKVLSSMSRRMTRNKWIVGS-IIVALVIAIIFI 211 (219)
Q Consensus 133 ~L~~s~~~~~ete~~g~~i~~~L~~Qre~L~~~~~~~~~i~~~l~~s~~~l~~m~rr~~~dk~Il~~-ii~~l~~~i~~v 211 (219)
-.++.-.++....+.+......|......|.++...++.-...++.++.-++.+.++-.. |++|+ ++++++++|+.|
T Consensus 168 L~~em~~La~~LK~~s~~~~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~~~~~~~--~~~~~~i~~v~~~Fi~mv 245 (251)
T PF09753_consen 168 LTEEMLSLARQLKENSLAFSQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEHSSKSWG--CWTWLMIFVVIIVFIMMV 245 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHH
Confidence 445556677777888888889999999999999999999999999999999998776655 55544 455555666667
Q ss_pred HHHhhc
Q 047357 212 LFYKLS 217 (219)
Q Consensus 212 i~~k~~ 217 (219)
+|.|+|
T Consensus 246 l~iri~ 251 (251)
T PF09753_consen 246 LFIRIF 251 (251)
T ss_pred HHheeC
Confidence 777765
No 10
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.29 E-value=0.00018 Score=59.30 Aligned_cols=193 Identities=16% Similarity=0.174 Sum_probs=115.3
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhcCC------C---ChhHHHHHHHHHH----chHHHHHHHHHHHHHHHhcCChhHHHH
Q 047357 4 VFEGYERQYCELSTNLSRKCSSASLL------P---DGDQKKEKYSEIQ----SGLDDADALIRKMDLEARSLQPNVKAM 70 (219)
Q Consensus 4 ~f~~ye~e~~~~~~~i~~~l~~~~~~------~---~~~~~~~~~~~~~----~~l~~a~~~~~~m~~E~~~~~~~~r~~ 70 (219)
.|-+-.+|+...+..+.++++.+.+. | ++.+....+..+. ..|..++..+.-...-.+..||+.+.-
T Consensus 58 ~wvd~~~ev~~~l~rvrrk~~eLgk~~~Khl~PsF~Dk~ede~~IE~ltq~Itqll~~cqk~iq~~~a~~n~~~~~e~~~ 137 (305)
T KOG0809|consen 58 AWVDVAEEVDYYLSRVRRKIDELGKAHAKHLRPSFSDKREDEHEIEELTQEITQLLQKCQKLIQRLSASLNQLSPSERLL 137 (305)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHH
Confidence 35566778888888888888776432 2 2222223333333 333333333333222222335555544
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcchh-----hHh----hhccCC----CC-CCC--CCCHHHHHHHH---hhHHHhhhhh
Q 047357 71 LLAKLREYKSDLNKLKREFKRVSSSD-----AHE----ELLESG----KA-DPN--VVSGEQRERLA---MSVERINQSG 131 (219)
Q Consensus 71 ~~~k~~~~~~~l~~l~~~~~~~~~~~-----~r~----~L~~~~----~~-~~~--~~~~~~r~~l~---~~~~~l~~~~ 131 (219)
...-...+-..+..+..+|+.++..| .|+ +.+.+. .. ++. +....+.++++ .+......-.
T Consensus 138 ~~n~~~~la~~LQ~~s~~fR~~Qs~YLK~l~~~ee~~~~~e~~~~~~~~~~dd~d~~~~~~qe~ql~~~e~~~~~~~erE 217 (305)
T KOG0809|consen 138 RKNAQGYLALQLQTLSREFRGLQSKYLKRLRNREENSQEYEDSLDNTVDLPDDEDFSDRTFQEQQLMLFENNEEVVRERE 217 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhcccchhhhccccccCcchhhhhhhhHHHHHHHHHhcchHHHHHHH
Confidence 44555666778888888888877664 111 122110 00 111 11122233333 2223333334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHH
Q 047357 132 ERIRESRRVMLETEELGISIVEDLNQQRETLLNSRNKLHGVDDAISKSKKVLSSMSRRMTRNKWI 196 (219)
Q Consensus 132 ~~L~~s~~~~~ete~~g~~i~~~L~~Qre~L~~~~~~~~~i~~~l~~s~~~l~~m~rr~~~dk~I 196 (219)
..+......+.|..++=.+...-...|.-.+.+++-++..+...+..|.+-+.+..+-..+++-.
T Consensus 218 ~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~KAe~yQk~~~k~ 282 (305)
T KOG0809|consen 218 KEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELHKAERYQKRNKKM 282 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHHHHHHHHhcCCce
Confidence 55666666777888888888888899999999999999999999999999999998887777633
No 11
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.98 E-value=0.0023 Score=53.81 Aligned_cols=80 Identities=14% Similarity=0.272 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhHhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 047357 132 ERIRESRRVMLETEELGISIVEDLNQQRETLLNSRNKLHGVDDAISKSKKVLS---SMSRRMTRNKWIVGSIIVALVIAI 208 (219)
Q Consensus 132 ~~L~~s~~~~~ete~~g~~i~~~L~~Qre~L~~~~~~~~~i~~~l~~s~~~l~---~m~rr~~~dk~Il~~ii~~l~~~i 208 (219)
+.+.+-.+.+.|..++=.+...-...|.|.+.++..+|......+..+..-++ ...++.++.|||.+++++++++++
T Consensus 206 ~~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~~qkkaRK~k~i~ii~~iii~~v~ 285 (297)
T KOG0810|consen 206 DEIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKAVKYQKKARKWKIIIIIILIIIIVVL 285 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhceeeeehHHHHHHHHH
Confidence 45666677788888888888888999999999999999999999999998887 777778877777766555544444
Q ss_pred HHH
Q 047357 209 IFI 211 (219)
Q Consensus 209 ~~v 211 (219)
+++
T Consensus 286 v~~ 288 (297)
T KOG0810|consen 286 VVV 288 (297)
T ss_pred hhh
Confidence 333
No 12
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=97.96 E-value=0.00053 Score=47.33 Aligned_cols=84 Identities=20% Similarity=0.314 Sum_probs=70.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047357 131 GERIRESRRVMLETEELGISIVEDLNQQRETLLNSRNKLHGVDDAISKSKKVLSSMSRRMTRNKWIVGSIIVALVIAIIF 210 (219)
Q Consensus 131 ~~~L~~s~~~~~ete~~g~~i~~~L~~Qre~L~~~~~~~~~i~~~l~~s~~~l~~m~rr~~~dk~Il~~ii~~l~~~i~~ 210 (219)
.+.+...+..++++..+-.+-++.+-+-.+.|....++..++...-..=.+.-+.+.|++.-.++-++++++++++++++
T Consensus 2 ~dkl~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~~~~~~k~~~i~~~iv~~~~~ 81 (89)
T PF00957_consen 2 NDKLEQIQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKRKMWWRNYKLYIIIIIIVIIIIL 81 (89)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhhh
Confidence 35677788889999999999999999999999999999999999988888888999999988888777777666666666
Q ss_pred HHHH
Q 047357 211 ILFY 214 (219)
Q Consensus 211 vi~~ 214 (219)
++++
T Consensus 82 ~i~~ 85 (89)
T PF00957_consen 82 IIII 85 (89)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6655
No 13
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=97.70 E-value=0.02 Score=47.12 Aligned_cols=88 Identities=18% Similarity=0.207 Sum_probs=73.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 047357 131 GERIRESRRVMLETEELGISIVEDLNQQRETLLNSRNKLHGVDDAISKSKKVLSSMSR-RMTRNKWIVGSIIVALVIAII 209 (219)
Q Consensus 131 ~~~L~~s~~~~~ete~~g~~i~~~L~~Qre~L~~~~~~~~~i~~~l~~s~~~l~~m~r-r~~~dk~Il~~ii~~l~~~i~ 209 (219)
...+.+..+-+.|..+|=.+.-.-...|.+...++..++..+..++..|++-+..... +..+.||-+|+.+++|+++.+
T Consensus 194 ~~eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~kA~~hqrrt~k~~~~~Llil~vv~lf 273 (283)
T COG5325 194 DEEIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKELEKAPAHQRRTKKCRFYLLLILLVVLLF 273 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHHHHHhHHHHhhhccchhhHHHHHHHHHHH
Confidence 4677778888888888888888888999999999999999999999999977766555 467788999988888888877
Q ss_pred HHHHHhhcc
Q 047357 210 FILFYKLSH 218 (219)
Q Consensus 210 ~vi~~k~~~ 218 (219)
+.+..|.+.
T Consensus 274 v~l~~kl~~ 282 (283)
T COG5325 274 VSLIKKLRS 282 (283)
T ss_pred HHHHHHhcc
Confidence 777776654
No 14
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=97.44 E-value=0.042 Score=44.18 Aligned_cols=80 Identities=18% Similarity=0.265 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhHhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047357 132 ERIRESRRVMLETEELGISIVEDLNQQRETLLNSRNKLHGVDDAISKSK----KVLSSMSRRMTRNKWIVGSIIVALVIA 207 (219)
Q Consensus 132 ~~L~~s~~~~~ete~~g~~i~~~L~~Qre~L~~~~~~~~~i~~~l~~s~----~~l~~m~rr~~~dk~Il~~ii~~l~~~ 207 (219)
.-|....++++|.-+.=+.+-+....|.+....+.+.+.+...++..+. +-++. .|..+++||+.|+|.++.+++
T Consensus 185 ~~ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~~n~~~g~~h~d~Avks-aRaaRkkki~c~gI~~iii~v 263 (280)
T COG5074 185 QEIKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQENVEQGVGHTDKAVKS-ARAARKKKIRCYGICFIIIIV 263 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHHhhHHHhhhhHHHHHHH-HHHHHhcceehhhhHHHHHHH
Confidence 3566677888999999999999999999999999999999888887776 45555 777888888887766555444
Q ss_pred HHHHH
Q 047357 208 IIFIL 212 (219)
Q Consensus 208 i~~vi 212 (219)
|++|+
T Consensus 264 iv~vv 268 (280)
T COG5074 264 IVVVV 268 (280)
T ss_pred HHHHH
Confidence 44443
No 15
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.27 E-value=0.002 Score=45.88 Aligned_cols=73 Identities=16% Similarity=0.228 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047357 132 ERIRESRRVMLETEELGISIVEDLNQQRETLLNSRNKLHGVDDAISKSKKVLSSMSRRMTRNKWIVGSIIVALV 205 (219)
Q Consensus 132 ~~L~~s~~~~~ete~~g~~i~~~L~~Qre~L~~~~~~~~~i~~~l~~s~~~l~~m~rr~~~dk~Il~~ii~~l~ 205 (219)
..++.-..-+--.....-+|..+...|...|.+..+..+.+.+-|+.+=.-++.|.|+ -.-++..|.++.+++
T Consensus 36 e~~e~L~~kV~aLKsLs~dIg~Ev~~qnklld~mdddfdsts~~L~gtm~r~~~~ar~-sg~~l~~~m~~f~lV 108 (118)
T KOG3385|consen 36 EAAESLQQKVKALKSLSLDIGDEVRTQNKLLDGMDDDFDSTSGFLSGTMGRLKTMARR-SGISLLCWMAVFSLV 108 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccchhhhHHHHHHHHHHHHHHHhc-CCcchHHHHHHHHHH
Confidence 3444455556666778888999999999999999999999999999999999999999 333444444444443
No 16
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=97.25 E-value=0.0026 Score=40.68 Aligned_cols=60 Identities=17% Similarity=0.247 Sum_probs=54.3
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhHhHHHHHHHHHH
Q 047357 126 RINQSGERIRESRRVMLETEELGISIVEDLNQQRETLLNSRNKLHGVDDAISKSKKVLSS 185 (219)
Q Consensus 126 ~l~~~~~~L~~s~~~~~ete~~g~~i~~~L~~Qre~L~~~~~~~~~i~~~l~~s~~~l~~ 185 (219)
.+......|......+.++.++|.++...+..|++.|.++...++.+...+..+.+-++.
T Consensus 6 ~~~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~~~~~~~l~~ 65 (66)
T smart00397 6 MEEERDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKANKRLKK 65 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhc
Confidence 456667889999999999999999999999999999999999999999999999876653
No 17
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.24 E-value=0.017 Score=41.49 Aligned_cols=82 Identities=17% Similarity=0.314 Sum_probs=58.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhHhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Q 047357 131 GERIRESRRVMLETEELGISIVEDLNQQRETLLNSRNKLHGVDDAISKSKKVLSSMSRR----MTRNKWIVGSIIVALVI 206 (219)
Q Consensus 131 ~~~L~~s~~~~~ete~~g~~i~~~L~~Qre~L~~~~~~~~~i~~~l~~s~~~l~~m~rr----~~~dk~Il~~ii~~l~~ 206 (219)
++.+.+++..++|+.+|-.+=.+..-+--++|....++.+.+...-+.=.+....+.|+ -.+-++|++++++++++
T Consensus 28 ~~k~~~tq~QvdeVv~IMr~NV~KVlER~ekL~~L~drad~L~~~as~F~~~A~klkrk~wWkn~Km~~il~~v~~i~l~ 107 (116)
T KOG0860|consen 28 NDKLQQTQAQVDEVVDIMRENVEKVLERGEKLDELDDRADQLQAGASQFEKTAVKLKRKMWWKNCKMRIILGLVIIILLV 107 (116)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35777788889999999998888888888999998888888777666555555555555 45556666666555555
Q ss_pred HHHHHH
Q 047357 207 AIIFIL 212 (219)
Q Consensus 207 ~i~~vi 212 (219)
+|++++
T Consensus 108 iiii~~ 113 (116)
T KOG0860|consen 108 VIIIYI 113 (116)
T ss_pred HHHHHH
Confidence 544433
No 18
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=97.22 E-value=0.015 Score=46.23 Aligned_cols=81 Identities=7% Similarity=0.147 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 047357 139 RVMLETEELGISIVEDLNQQRETLLNSRNKLHGVDDAISKSKKVLSSMSRRMTRNKWIVGSIIVALVIAIIFILFYKLSH 218 (219)
Q Consensus 139 ~~~~ete~~g~~i~~~L~~Qre~L~~~~~~~~~i~~~l~~s~~~l~~m~rr~~~dk~Il~~ii~~l~~~i~~vi~~k~~~ 218 (219)
.+|-....-+.+.-..|....+++..+-..++.-...|...+.-+.+-...-..+++-+..||++|+.+|+.|++.+||+
T Consensus 162 ~LArslKtnalAfqsalkeDnQvl~~~~k~~D~N~~~L~~~Serve~y~ksk~s~wf~~~miI~v~~sFVsMiliiqifk 241 (244)
T KOG2678|consen 162 KLARSLKTNALAFQSALKEDNQVLGAAEKGIDVNSQGLMDVSERVEKYDKSKLSYWFYITMIIFVILSFVSMILIIQIFK 241 (244)
T ss_pred HHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444555666667788999999999999999999999999999999999988898888889999999999999999998
Q ss_pred C
Q 047357 219 H 219 (219)
Q Consensus 219 ~ 219 (219)
|
T Consensus 242 k 242 (244)
T KOG2678|consen 242 K 242 (244)
T ss_pred c
Confidence 6
No 19
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.10 E-value=0.0055 Score=50.89 Aligned_cols=61 Identities=18% Similarity=0.258 Sum_probs=56.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhHhHHHHHHHHHHHHH
Q 047357 128 NQSGERIRESRRVMLETEELGISIVEDLNQQRETLLNSRNKLHGVDDAISKSKKVLSSMSR 188 (219)
Q Consensus 128 ~~~~~~L~~s~~~~~ete~~g~~i~~~L~~Qre~L~~~~~~~~~i~~~l~~s~~~l~~m~r 188 (219)
..+..+-.++..++.|++..|..|+..|..|+|+|.++...++.+...+..+.+.++.|..
T Consensus 75 ~eSl~St~~~L~~~~e~~~~g~~Tl~~L~~Q~eQL~rte~~lD~i~~d~~~~er~l~~l~~ 135 (273)
T KOG3065|consen 75 QESLKSTRRMLKLAEESREDGSRTLVMLSEQGEQLERTEKNLDDIKVDLKRAERNLTELKG 135 (273)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 4566777888889999999999999999999999999999999999999999999988764
No 20
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.00 E-value=0.16 Score=42.24 Aligned_cols=88 Identities=10% Similarity=0.093 Sum_probs=65.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhHhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q 047357 128 NQSGERIRESRRVMLETEELGISIVEDLNQQRETLLNSRNKLHGVDDAISKSKKVLSSMSRR---MTRNKWIVGSIIVAL 204 (219)
Q Consensus 128 ~~~~~~L~~s~~~~~ete~~g~~i~~~L~~Qre~L~~~~~~~~~i~~~l~~s~~~l~~m~rr---~~~dk~Il~~ii~~l 204 (219)
+.-...+.+..+-+.|..+|=.+...=.++|.+.+..+.+++..+..++..++.-|++=.+- ..+-+||+.+|++++
T Consensus 176 eeR~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~kA~~yq~~~~k~~~~ll~v~~~v 255 (269)
T KOG0811|consen 176 EEREQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRKAAKYQRKARKKKCILLLVGGPV 255 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHH
Confidence 33446677777778888888888888889999999999999999999999999887765443 333346666666666
Q ss_pred HHHHHHHHHHh
Q 047357 205 VIAIIFILFYK 215 (219)
Q Consensus 205 ~~~i~~vi~~k 215 (219)
++++++++|..
T Consensus 256 ~lii~l~i~~~ 266 (269)
T KOG0811|consen 256 GLIIGLIIAGI 266 (269)
T ss_pred HHHHHHHHHHh
Confidence 66666666654
No 21
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.94 E-value=0.0096 Score=49.81 Aligned_cols=87 Identities=15% Similarity=0.241 Sum_probs=76.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047357 128 NQSGERIRESRRVMLETEELGISIVEDLNQQRETLLNSRNKLHGVDDAISKSKKVLSSMSRRMTRNKWIVGSIIVALVIA 207 (219)
Q Consensus 128 ~~~~~~L~~s~~~~~ete~~g~~i~~~L~~Qre~L~~~~~~~~~i~~~l~~s~~~l~~m~rr~~~dk~Il~~ii~~l~~~ 207 (219)
+...+-+..+.+.+.|+..+-....+.+-.|-+.+..+.+...++..++..+|.-|+...+...+.+..+.+.+++|.++
T Consensus 228 n~~~devrqie~~lvEI~~Lq~ifsehvl~Q~~~Id~I~d~~~~~teNIk~gNe~irka~~~~~~~r~~~lf~llvlsf~ 307 (316)
T KOG3894|consen 228 NELLDEVRQIEKRLVEISALQDIFSEHVLQQDQNIDLIHDLQSGATENIKDGNEEIRKAKRNNGGLRVFLLFFLLVLSFS 307 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHhcccchhHHHHHHHHHHHH
Confidence 33455666777889999999999999999999999999999999999999999999999999888888887777788888
Q ss_pred HHHHHHH
Q 047357 208 IIFILFY 214 (219)
Q Consensus 208 i~~vi~~ 214 (219)
+.|+-||
T Consensus 308 lLFldwy 314 (316)
T KOG3894|consen 308 LLFLDWY 314 (316)
T ss_pred HHHHhhc
Confidence 8887776
No 22
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=96.77 E-value=0.026 Score=35.97 Aligned_cols=59 Identities=19% Similarity=0.264 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhHhHHHHHHHHHHHHHHH
Q 047357 132 ERIRESRRVMLETEELGISIVEDLNQQRETLLNSRNKLHGVDDAISKSKKVLSSMSRRM 190 (219)
Q Consensus 132 ~~L~~s~~~~~ete~~g~~i~~~L~~Qre~L~~~~~~~~~i~~~l~~s~~~l~~m~rr~ 190 (219)
..|+...+.+.+..+++.++...+..|.+.|.++..+++.+...+..+.+-+....+..
T Consensus 4 ~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka~~~~ 62 (63)
T PF05739_consen 4 EELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKALKYQ 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46777888899999999999999999999999999999999999999999988877653
No 23
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=96.16 E-value=0.06 Score=34.82 Aligned_cols=57 Identities=14% Similarity=0.407 Sum_probs=42.6
Q ss_pred HHHHHhhhhhhhhhHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047357 160 ETLLNSRNKLHGVDDAISKSK-KVLSSMSRRMTRNKWIVGSIIVALVIAIIFILFYKL 216 (219)
Q Consensus 160 e~L~~~~~~~~~i~~~l~~s~-~~l~~m~rr~~~dk~Il~~ii~~l~~~i~~vi~~k~ 216 (219)
.....+.+++++++..+.-++ .+..++.++.-+|--|+|++++-+++.+++.++.++
T Consensus 12 ~~~~~i~~rLd~iEeKvEf~~~Ei~Qr~GkkiGRDiGIlYG~v~Glii~~~~~~l~~~ 69 (70)
T PF04210_consen 12 DDFNEIMKRLDEIEEKVEFTNAEIAQRAGKKIGRDIGILYGLVIGLIIFIIYIVLSSM 69 (70)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345567778888888887776 567889999999999999977766666555555544
No 24
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=95.84 E-value=0.082 Score=32.89 Aligned_cols=54 Identities=15% Similarity=0.246 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhHhHHHHHHHHHH
Q 047357 132 ERIRESRRVMLETEELGISIVEDLNQQRETLLNSRNKLHGVDDAISKSKKVLSS 185 (219)
Q Consensus 132 ~~L~~s~~~~~ete~~g~~i~~~L~~Qre~L~~~~~~~~~i~~~l~~s~~~l~~ 185 (219)
..|......+.+..+++.++...+..|.+.|.++..+++.+...+..+.+-+.+
T Consensus 6 ~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~~~~~~l~k 59 (60)
T cd00193 6 EELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANKRLKK 59 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 467778888899999999999999999999999999999999999998876653
No 25
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.81 E-value=0.74 Score=36.69 Aligned_cols=169 Identities=20% Similarity=0.171 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHhhhhhc----CCCChhHHHHHHHHHHchHHHHHHHHHHHHHHHhcCChh-HHHHHHHHHHHHHHHHH
Q 047357 9 ERQYCELSTNLSRKCSSAS----LLPDGDQKKEKYSEIQSGLDDADALIRKMDLEARSLQPN-VKAMLLAKLREYKSDLN 83 (219)
Q Consensus 9 e~e~~~~~~~i~~~l~~~~----~~~~~~~~~~~~~~~~~~l~~a~~~~~~m~~E~~~~~~~-~r~~~~~k~~~~~~~l~ 83 (219)
-.+|+..+++++..|++.+ .. +|+-| ..+..+|.+++..++.+..|++..|+. ........+ +.
T Consensus 38 l~~i~~~leEa~ell~qMdlEvr~l-p~~~R----s~~~~KlR~yksdl~~l~~e~k~~~~~~~~~~~rde~------~~ 106 (220)
T KOG1666|consen 38 LSEIDSKLEEANELLDQMDLEVREL-PPNFR----SSYLSKLREYKSDLKKLKRELKRTTSRNLNAGDRDEL------LE 106 (220)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHhC-Cchhh----hHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHH------Hh
Confidence 3455556666666666542 22 33333 456677888888888888888887711 000111000 01
Q ss_pred HHHHHHHhhcchhhHhhhccCCCCCCCCCCHHHHHHHHhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 047357 84 KLKREFKRVSSSDAHEELLESGKADPNVVSGEQRERLAMSVERINQSGERIRESRRVMLETEELGISIVEDLNQQRETLL 163 (219)
Q Consensus 84 ~l~~~~~~~~~~~~r~~L~~~~~~~~~~~~~~~r~~l~~~~~~l~~~~~~L~~s~~~~~ete~~g~~i~~~L~~Qre~L~ 163 (219)
.+..+= .......|..|+.+. ++|-+.++++.++-....++..+..++.+==..=.+.|..-|+.|.
T Consensus 107 ~~~add-~~~~~dQR~rLl~nT------------erLeRst~rl~ds~Ria~ETEqIG~~IL~dL~~QRe~L~rar~rL~ 173 (220)
T KOG1666|consen 107 ALEADD-QNISADQRARLLQNT------------ERLERSTDRLKDSQRIALETEQIGSEILEDLHGQREQLERARERLR 173 (220)
T ss_pred hhhccc-cccchhHHHHHHhhh------------HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111100 001123677777542 2344444455555445555555555554333334567777888888
Q ss_pred HhhhhhhhhhHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 047357 164 NSRNKLHGVDDAISKSKKVLSSMSRR-MTRNKWIVGSIIVAL 204 (219)
Q Consensus 164 ~~~~~~~~i~~~l~~s~~~l~~m~rr-~~~dk~Il~~ii~~l 204 (219)
.+++++..-...|.. ..+++.+. ....-+|++.+++++
T Consensus 174 ~td~~lgkS~kiL~t---M~RR~~~nk~~~~aii~~l~~~il 212 (220)
T KOG1666|consen 174 ETDANLGKSRKILTT---MTRRLIRNKFTLTAIIALLVLAIL 212 (220)
T ss_pred hchhhhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888776665543 33444444 444445544444443
No 26
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=95.79 E-value=0.089 Score=33.95 Aligned_cols=56 Identities=14% Similarity=0.367 Sum_probs=37.8
Q ss_pred HHhhhhhhhhhHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 047357 163 LNSRNKLHGVDDAISKSK-KVLSSMSRRMTRNKWIVGSIIVALVIAIIFILFYKLSH 218 (219)
Q Consensus 163 ~~~~~~~~~i~~~l~~s~-~~l~~m~rr~~~dk~Il~~ii~~l~~~i~~vi~~k~~~ 218 (219)
..+++++++++..+.-.+ .+-.++.+++-+|--|+|++++-+++..++++..+.|+
T Consensus 18 ne~~kRLdeieekvef~~~Ev~Qr~GkkiGRDIGILYGlVIGlil~~i~~~l~~~~~ 74 (75)
T COG4064 18 NEIHKRLDEIEEKVEFVNGEVYQRIGKKIGRDIGILYGLVIGLILCMIYILLGVAFR 74 (75)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566666666666555 55678999999999999986665555555555555544
No 27
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=95.67 E-value=0.13 Score=34.00 Aligned_cols=57 Identities=11% Similarity=0.450 Sum_probs=42.2
Q ss_pred HHHHHhhhhhhhhhHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047357 160 ETLLNSRNKLHGVDDAISKSK-KVLSSMSRRMTRNKWIVGSIIVALVIAIIFILFYKL 216 (219)
Q Consensus 160 e~L~~~~~~~~~i~~~l~~s~-~~l~~m~rr~~~dk~Il~~ii~~l~~~i~~vi~~k~ 216 (219)
.-...+.+++++++..+.-++ .+..++.++.-+|--|+|++++-+++.++++.+..+
T Consensus 15 ~d~~~i~~rLD~iEeKVEftn~Ei~Qr~GkkvGRDiGIlYG~viGlli~~i~~~~~~~ 72 (77)
T PRK01026 15 KDFKEIQKRLDEIEEKVEFTNAEIFQRIGKKVGRDIGILYGLVIGLLIVLVYIILSPI 72 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667788888888888777 567788999999999999876666555555555444
No 28
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=95.63 E-value=0.16 Score=32.79 Aligned_cols=56 Identities=14% Similarity=0.402 Sum_probs=40.8
Q ss_pred HHHHhhhhhhhhhHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047357 161 TLLNSRNKLHGVDDAISKSK-KVLSSMSRRMTRNKWIVGSIIVALVIAIIFILFYKL 216 (219)
Q Consensus 161 ~L~~~~~~~~~i~~~l~~s~-~~l~~m~rr~~~dk~Il~~ii~~l~~~i~~vi~~k~ 216 (219)
-...+.+++++++..+.-++ .+..+..++.-+|--|+|++++-+++.+++.+.+.+
T Consensus 13 d~~~i~~rLd~iEeKVEf~~~E~~Qr~Gkk~GRDiGIlYG~viGlli~~~~~~l~~~ 69 (70)
T TIGR01149 13 EFNEVMKRLDEIEEKVEFVNGEVAQRIGKKVGRDIGILYGLVIGLILFLIYILLSSM 69 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34566778888888887776 567888999999999999866665555555554443
No 29
>PRK10884 SH3 domain-containing protein; Provisional
Probab=95.11 E-value=1.2 Score=35.64 Aligned_cols=59 Identities=14% Similarity=0.316 Sum_probs=36.9
Q ss_pred HHHHHHHhhHHHHHhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047357 151 IVEDLNQQRETLLNSRNKLHGVDDAISKSKKVLSSMSRRMTRNKWIVGSIIVALVIAIIFIL 212 (219)
Q Consensus 151 i~~~L~~Qre~L~~~~~~~~~i~~~l~~s~~~l~~m~rr~~~dk~Il~~ii~~l~~~i~~vi 212 (219)
...+|..+.+.| ...+..+...+......+....+....+.|+..++++++.+++++|+
T Consensus 133 ~~~~L~~~n~~L---~~~l~~~~~~~~~l~~~~~~~~~~~~~~wf~~Gg~v~~~GlllGlil 191 (206)
T PRK10884 133 VINGLKEENQKL---KNQLIVAQKKVDAANLQLDDKQRTIIMQWFMYGGGVAGIGLLLGLLL 191 (206)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHh
Confidence 344466666655 34455566666666666777777777777766666666666666554
No 30
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.93 E-value=0.58 Score=33.65 Aligned_cols=50 Identities=18% Similarity=0.240 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhHhHHHHHHHHHHHHHH
Q 047357 140 VMLETEELGISIVEDLNQQRETLLNSRNKLHGVDDAISKSKKVLSSMSRR 189 (219)
Q Consensus 140 ~~~ete~~g~~i~~~L~~Qre~L~~~~~~~~~i~~~l~~s~~~l~~m~rr 189 (219)
-+..|.++-.++..=++.-=+++.--..++++++...+.=..--..+.+.
T Consensus 30 k~~~tq~QvdeVv~IMr~NV~KVlER~ekL~~L~drad~L~~~as~F~~~ 79 (116)
T KOG0860|consen 30 KLQQTQAQVDEVVDIMRENVEKVLERGEKLDELDDRADQLQAGASQFEKT 79 (116)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444433333333344333
No 31
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=93.76 E-value=1.4 Score=29.97 Aligned_cols=56 Identities=21% Similarity=0.374 Sum_probs=40.1
Q ss_pred HHHHHHHhhHHHHHhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047357 151 IVEDLNQQRETLLNSRNKLHGVDDAISKSKKVLSSMSRRMTRNKWIVGSIIVALVIAIIFIL 212 (219)
Q Consensus 151 i~~~L~~Qre~L~~~~~~~~~i~~~l~~s~~~l~~m~rr~~~dk~Il~~ii~~l~~~i~~vi 212 (219)
-+++|..+.+.|........ ..|.++=+.|-.+-++-.+|+.+++++++++|++++
T Consensus 32 ~L~~L~~kt~~L~~~a~~F~------k~a~~l~r~~~~~~~k~~~i~~~iv~~~~~~i~~~~ 87 (89)
T PF00957_consen 32 KLEELEDKTEELSDNAKQFK------KNAKKLKRKMWWRNYKLYIIIIIIVIIIILIIIIVI 87 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHhHHHH------HHHHHHHHHHHHHHHHHHHhHHhhhhhhhhHHHHHH
Confidence 35566667776666555544 356667778888899999999888888777777654
No 32
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=93.60 E-value=3.1 Score=38.44 Aligned_cols=81 Identities=23% Similarity=0.269 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHhhhhhcCCCChhHHHHHHHHHHchHHHHHHHHHHHHHHHhcCCh--hHHHHHHHHHHHHHHHHHHHH
Q 047357 9 ERQYCELSTNLSRKCSSASLLPDGDQKKEKYSEIQSGLDDADALIRKMDLEARSLQP--NVKAMLLAKLREYKSDLNKLK 86 (219)
Q Consensus 9 e~e~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~m~~E~~~~~~--~~r~~~~~k~~~~~~~l~~l~ 86 (219)
+.++..+.+++...+..+..+ +.++....+..+...|+ .+.+.|+.|+..-+. .........+...+.....+.
T Consensus 251 ~~~i~~i~~~l~~~~~~L~~l-~l~~~~~~~~~i~~~Id---~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~ 326 (560)
T PF06160_consen 251 EEEIEQIEEQLEEALALLKNL-ELDEVEEENEEIEERID---QLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELK 326 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444 43444333333433333 335666666654331 122344444444444555555
Q ss_pred HHHHhhc
Q 047357 87 REFKRVS 93 (219)
Q Consensus 87 ~~~~~~~ 93 (219)
.++.++.
T Consensus 327 ~e~~~v~ 333 (560)
T PF06160_consen 327 EELERVS 333 (560)
T ss_pred HHHHHHH
Confidence 5555544
No 33
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=92.31 E-value=5.7 Score=32.89 Aligned_cols=54 Identities=19% Similarity=0.240 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcCCC-Ch----hHHHHHHHHHHchHHHHHHHHHHHHH
Q 047357 5 FEGYERQYCELSTNLSRKCSSASLLP-DG----DQKKEKYSEIQSGLDDADALIRKMDL 58 (219)
Q Consensus 5 f~~ye~e~~~~~~~i~~~l~~~~~~~-~~----~~~~~~~~~~~~~l~~a~~~~~~m~~ 58 (219)
..+.+.++..+..++........... +. .....+...+......+.+++.++..
T Consensus 54 l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~ 112 (264)
T PF06008_consen 54 LESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVES 112 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777777666554321 11 23334444455555555555555544
No 34
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=92.22 E-value=0.61 Score=29.50 Aligned_cols=31 Identities=19% Similarity=0.420 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047357 181 KVLSSMSRRMTRNKWIVGSIIVALVIAIIFI 211 (219)
Q Consensus 181 ~~l~~m~rr~~~dk~Il~~ii~~l~~~i~~v 211 (219)
....+-.+|+.+-+.|+++++++++++++++
T Consensus 26 ~~~~k~qk~~~~~~~i~~~~~i~~l~v~~~~ 56 (59)
T PF09889_consen 26 EEYRKRQKRMRKTQYIFFGIFILFLAVWIFM 56 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556677777888887777664444433
No 35
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.44 E-value=2.1 Score=35.78 Aligned_cols=59 Identities=14% Similarity=0.274 Sum_probs=52.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhHhHHHHHHHHHHH
Q 047357 128 NQSGERIRESRRVMLETEELGISIVEDLNQQRETLLNSRNKLHGVDDAISKSKKVLSSM 186 (219)
Q Consensus 128 ~~~~~~L~~s~~~~~ete~~g~~i~~~L~~Qre~L~~~~~~~~~i~~~l~~s~~~l~~m 186 (219)
+....-|+....++.....+|.+.-.+|..|.+.|.++.++++..+..+..+++-++.+
T Consensus 214 deiD~NL~qis~~lg~LK~mA~dmg~Eie~Qn~~Ld~I~~k~d~~d~~v~~~n~R~~kL 272 (273)
T KOG3065|consen 214 DEIDENLDQLSAILGRLKNMALDMGSEIESQNERLDRIEDKVDRLDLRVDKANKRAKKL 272 (273)
T ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHhhhhHHHHHHHHHHhc
Confidence 34556888899999999999999999999999999999999999999999998877654
No 36
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.11 E-value=1.4 Score=34.69 Aligned_cols=84 Identities=12% Similarity=0.164 Sum_probs=61.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047357 131 GERIRESRRVMLETEELGISIVEDLNQQRETLLNSRNKLHGVDDAISKSKKVLSSMSRRMTRNKWIVGSIIVALVIAIIF 210 (219)
Q Consensus 131 ~~~L~~s~~~~~ete~~g~~i~~~L~~Qre~L~~~~~~~~~i~~~l~~s~~~l~~m~rr~~~dk~Il~~ii~~l~~~i~~ 210 (219)
-+.|.+.+..+.|..++-.+=.+.+.+-.|.|+=--++...+.++-..=++.-+++.|.++-..+=+.++++++++.+++
T Consensus 124 id~lskvkaqv~evk~vM~eNIekvldRGekiELLVdKTenl~~~s~~fr~q~r~~~r~mw~~n~kl~~iv~~~~~~~iy 203 (217)
T KOG0859|consen 124 ISKLAKVKAQVTEVKGVMMENIEKVLDRGEKIELLVDKTENLRSKSFDFRTQGRKLRRKMWFQNMKLKLIVLGVSISLIY 203 (217)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhccCeEEeeechhhhhhhhhHHHHHHHHHHHHHHHHhccceehhhhhHHHHHHH
Confidence 35677788889999999999888888888988888888888888877777777777777766655555544444444444
Q ss_pred HHHH
Q 047357 211 ILFY 214 (219)
Q Consensus 211 vi~~ 214 (219)
+++.
T Consensus 204 iiv~ 207 (217)
T KOG0859|consen 204 IIVA 207 (217)
T ss_pred HHHH
Confidence 4443
No 37
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=89.28 E-value=0.52 Score=29.09 Aligned_cols=30 Identities=30% Similarity=0.450 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047357 182 VLSSMSRRMTRNKWIVGSIIVALVIAIIFI 211 (219)
Q Consensus 182 ~l~~m~rr~~~dk~Il~~ii~~l~~~i~~v 211 (219)
..+.+-+|..+||+-+++++++++++++.+
T Consensus 4 ~~~~~~~~f~~nk~a~~gl~il~~~vl~ai 33 (56)
T PF12911_consen 4 PWKDAWRRFRRNKLAVIGLIILLILVLLAI 33 (56)
T ss_pred HHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence 456788999999999987666655554443
No 38
>TIGR01294 P_lamban phospholamban. This model represents the short (52 residue) transmembrane phosphoprotein phospholamban. Phospholamban, in its unphosphorylated form, inhibits SERCA2, the cardiac sarcoplasmic reticulum Ca-ATPase.
Probab=88.85 E-value=1.6 Score=25.71 Aligned_cols=29 Identities=21% Similarity=0.317 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047357 185 SMSRRMTRNKWIVGSIIVALVIAIIFILF 213 (219)
Q Consensus 185 ~m~rr~~~dk~Il~~ii~~l~~~i~~vi~ 213 (219)
.=.|+...+-++=+.+|++|++.|++++.
T Consensus 22 ~qar~~lq~lfvnf~lilicllli~iivm 50 (52)
T TIGR01294 22 QQARQNLQNLFINFCLILICLLLICIIVM 50 (52)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777778888888888776654
No 39
>PF04272 Phospholamban: Phospholamban; InterPro: IPR005984 Phospholamban (PLB) is a small protein (52 amino acids) that regulates the affinity of the cardiac sarcoplasmic reticulum Ca2+-ATPase (SERCA2a) for calcium. PLB is present in cardiac myocytes, in slow-twitch and smooth muscle and is expressed also in aorta endothelial cells in which it could play a role in tissue relaxation. The phosphorylation/dephosphorylation of phospholamban removes and restores, respectively, its inhibitory activity on SERCA2a. It has in fact been shown that phospholamban, in its non-phosphorylated form, binds to SERCA2a and inhibits this pump by lowering its affinity for Ca2+, whereas the phosphorylated form does not exert the inhibition. PLB is phosphorylated at two sites, namely at Ser-16 for a cAMP-dependent phosphokinase and at Thr-17 for a Ca2+/calmodulin-dependent phosphokinase, phosphorylation at Ser-16 being a prerequisite for the phosphorylation at Thr-17. The structure of a 36-amino-acid-long N-terminal fragment of human phospholamban phosphorylated at Ser-16 and Thr-17 and Cys36Ser mutated was determined from nuclear magnetic resonance data. The peptide assumes a conformation characterised by two alpha-helices connected by an irregular strand, which comprises the amino acids from Arg-13 to Pro-21. The proline is in a trans conformation. The two phosphate groups on Ser-16 and Thr-17 are shown to interact preferably with the side chains of Arg-14 and Arg-13, respectively [].; GO: 0005246 calcium channel regulator activity, 0042030 ATPase inhibitor activity, 0006816 calcium ion transport, 0016020 membrane; PDB: 1N7L_A 1FJP_A 1FJK_A 2HYN_C 1ZLL_D 1PLP_A 3O7L_I.
Probab=87.45 E-value=2.1 Score=25.26 Aligned_cols=27 Identities=15% Similarity=0.304 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047357 187 SRRMTRNKWIVGSIIVALVIAIIFILF 213 (219)
Q Consensus 187 ~rr~~~dk~Il~~ii~~l~~~i~~vi~ 213 (219)
.|+...+-++=+.+|++|++.|++++.
T Consensus 24 a~qnlqelfvnfclilicllli~iiv~ 50 (52)
T PF04272_consen 24 ARQNLQELFVNFCLILICLLLICIIVM 50 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566667777788888777776653
No 40
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=87.17 E-value=7.8 Score=29.22 Aligned_cols=47 Identities=17% Similarity=0.169 Sum_probs=33.8
Q ss_pred CchhHHHHHHHHHHHHHHHHHhhhhhcCCCChhHHHHHHHHHHchHHHH
Q 047357 1 MSEVFEGYERQYCELSTNLSRKCSSASLLPDGDQKKEKYSEIQSGLDDA 49 (219)
Q Consensus 1 Ms~~f~~ye~e~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~a 49 (219)
|.+.+..|+.++..-++++...|..+... ..+....+..+...+...
T Consensus 23 i~~~L~k~~~~v~~~i~~L~~~L~~~~n~--t~~~~~~v~~i~~~~~~~ 69 (146)
T PF08702_consen 23 IQDFLDKYERDVDKDIQELENLLDQISNS--TSEAFEYVKNIKDSLRPR 69 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHhcc
Confidence 45788999999999999999999999763 344444455555544443
No 41
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.12 E-value=14 Score=29.65 Aligned_cols=65 Identities=14% Similarity=0.176 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHH
Q 047357 132 ERIRESRRVMLETEELGISIVEDLNQQRETLLNSRNKLHGVDDAISKSKKVLSSMSRRMTRNKWI 196 (219)
Q Consensus 132 ~~L~~s~~~~~ete~~g~~i~~~L~~Qre~L~~~~~~~~~i~~~l~~s~~~l~~m~rr~~~dk~I 196 (219)
.-+..-...+.++..+...-++++..-.+.|......-.+....-..-.+..+.|.++.+-+++-
T Consensus 134 ~n~~~~n~el~~v~~im~~niedvl~rg~~l~~l~~~~s~l~~~s~~y~~~a~~in~~sl~~~~a 198 (216)
T KOG0862|consen 134 RNLLKLNQELQDVQRIMVENLEDVLQRGEVLNALSSMASELSSESRKYPKTAKGINRKSLIRKYA 198 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhhchHHHhhhhhhhcccHHHHhhHHHHHHHHHHHHHHHHH
Confidence 34444555566667778888888887778877777766666666666667778888887777766
No 42
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=86.83 E-value=12 Score=28.66 Aligned_cols=50 Identities=12% Similarity=0.389 Sum_probs=24.3
Q ss_pred ChhHHHHHHHHHHchHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHH
Q 047357 31 DGDQKKEKYSEIQSGLDDADALIRKMDLEARSLQPNVKAMLLAKLREYKS 80 (219)
Q Consensus 31 ~~~~~~~~~~~~~~~l~~a~~~~~~m~~E~~~~~~~~r~~~~~k~~~~~~ 80 (219)
+.++-...+..++..+.+++.-+..+......+++..+.........++.
T Consensus 110 t~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~ee~~~~~~~~~~~~k 159 (169)
T PF07106_consen 110 TNEELREEIEELEEEIEELEEKLEKLRSGSKPVSPEEKEKLEKEYKKWRK 159 (169)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence 33455555555555555555555555554444444444444433333333
No 43
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=86.73 E-value=3 Score=26.36 Aligned_cols=33 Identities=9% Similarity=0.131 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 047357 185 SMSRRMTRNKWIVGSIIVALVIAIIFILFYKLS 217 (219)
Q Consensus 185 ~m~rr~~~dk~Il~~ii~~l~~~i~~vi~~k~~ 217 (219)
...++..+.+-..++..++++++++++++..||
T Consensus 27 ~~~k~qk~~~~~~~i~~~~~i~~l~v~~~~~~~ 59 (59)
T PF09889_consen 27 EYRKRQKRMRKTQYIFFGIFILFLAVWIFMTFF 59 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 456667777778888999888888888888765
No 44
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=86.16 E-value=7.3 Score=25.41 Aligned_cols=22 Identities=41% Similarity=0.771 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 047357 190 MTRNKWIVGSIIVALVIAIIFI 211 (219)
Q Consensus 190 ~~~dk~Il~~ii~~l~~~i~~v 211 (219)
....||+..++++.++.+++.+
T Consensus 47 ~~n~kW~~r~iiGaiI~~i~~~ 68 (71)
T PF10779_consen 47 KSNTKWIWRTIIGAIITAIIYL 68 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4457788887777776655443
No 45
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=84.62 E-value=48 Score=33.48 Aligned_cols=6 Identities=17% Similarity=0.313 Sum_probs=2.1
Q ss_pred HHHHHH
Q 047357 14 ELSTNL 19 (219)
Q Consensus 14 ~~~~~i 19 (219)
.++++|
T Consensus 1475 ~Li~~v 1480 (1758)
T KOG0994|consen 1475 NLIQQV 1480 (1758)
T ss_pred HHHHHH
Confidence 333333
No 46
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=84.58 E-value=50 Score=33.66 Aligned_cols=8 Identities=0% Similarity=0.206 Sum_probs=2.8
Q ss_pred hhhhhhHh
Q 047357 168 KLHGVDDA 175 (219)
Q Consensus 168 ~~~~i~~~ 175 (219)
.+..+...
T Consensus 526 ~~~~l~~~ 533 (1201)
T PF12128_consen 526 QIAELQRQ 533 (1201)
T ss_pred HHHHHHHh
Confidence 33333333
No 47
>PHA03240 envelope glycoprotein M; Provisional
Probab=83.77 E-value=1.2 Score=35.53 Aligned_cols=20 Identities=25% Similarity=0.645 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 047357 197 VGSIIVALVIAIIFILFYKL 216 (219)
Q Consensus 197 l~~ii~~l~~~i~~vi~~k~ 216 (219)
.|+||++++++|++++|+||
T Consensus 214 ~WIiilIIiIiIIIL~cfKi 233 (258)
T PHA03240 214 AWIFIAIIIIIVIILFFFKI 233 (258)
T ss_pred hHHHHHHHHHHHHHHHHHhc
Confidence 34444444445555566665
No 48
>PHA02650 hypothetical protein; Provisional
Probab=82.33 E-value=2.7 Score=27.98 Aligned_cols=21 Identities=14% Similarity=0.203 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHhhcc
Q 047357 198 GSIIVALVIAIIFILFYKLSH 218 (219)
Q Consensus 198 ~~ii~~l~~~i~~vi~~k~~~ 218 (219)
.++++++++++++.+|+|..+
T Consensus 54 i~i~~v~i~~l~~flYLK~~~ 74 (81)
T PHA02650 54 FLIFSLIIVALFSFFVFKGYT 74 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 335555666677778888765
No 49
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=81.66 E-value=0.94 Score=31.93 Aligned_cols=24 Identities=13% Similarity=0.449 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 047357 192 RNKWIVGSIIVALVIAIIFILFYK 215 (219)
Q Consensus 192 ~dk~Il~~ii~~l~~~i~~vi~~k 215 (219)
.+-++++++.++|+++++++|||-
T Consensus 61 ~~iili~lls~v~IlVily~IyYF 84 (101)
T PF06024_consen 61 GNIILISLLSFVCILVILYAIYYF 84 (101)
T ss_pred ccchHHHHHHHHHHHHHHhhheEE
Confidence 455666666666777777777663
No 50
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=81.30 E-value=55 Score=31.80 Aligned_cols=89 Identities=18% Similarity=0.362 Sum_probs=46.1
Q ss_pred HhhhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhh-hHhHHH----HHHHHH---HHHHHHHHHHHH
Q 047357 126 RINQSGERIRESRR-VMLETEELGISIVEDLNQQRETLLNSRNKLHGV-DDAISK----SKKVLS---SMSRRMTRNKWI 196 (219)
Q Consensus 126 ~l~~~~~~L~~s~~-~~~ete~~g~~i~~~L~~Qre~L~~~~~~~~~i-~~~l~~----s~~~l~---~m~rr~~~dk~I 196 (219)
...++...+++.-. +..+|..+-..+...|...++.+....+.+... ++.+.. +.+.++ ..-.+--..+|+
T Consensus 336 ~v~~~~~~~~~ip~~v~~qt~~~v~~ik~~l~~~~~~i~~~a~~i~~~~~~~~s~~~~~~~~~~~~~~~~~~~y~~yR~~ 415 (806)
T PF05478_consen 336 IVQEGNSRFNDIPEKVQNQTSDVVPPIKRDLDSIGKQIRSQAKQIPNQIDSNISDILNNTERSSRSFEDEYEKYDSYRWI 415 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Confidence 34455555555444 344566666677777777777777666555543 111111 111111 222344556777
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 047357 197 VGSIIVALVIAIIFILFY 214 (219)
Q Consensus 197 l~~ii~~l~~~i~~vi~~ 214 (219)
..+++.+++++|++++++
T Consensus 416 ~~lil~~~llLIv~~~~l 433 (806)
T PF05478_consen 416 VGLILCCVLLLIVLCLLL 433 (806)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 766666655555544443
No 51
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.17 E-value=31 Score=28.75 Aligned_cols=70 Identities=21% Similarity=0.340 Sum_probs=44.9
Q ss_pred HHHHHHHHHHchHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcchh-hHhhhccC
Q 047357 34 QKKEKYSEIQSGLDDADALIRKMDLEARSLQPNVKAMLLAKLREYKSDLNKLKREFKRVSSSD-AHEELLES 104 (219)
Q Consensus 34 ~~~~~~~~~~~~l~~a~~~~~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~~l~~~~~~~~~~~-~r~~L~~~ 104 (219)
.....+..+......++.-++.|.-.+..+.. .......++.+.+.++..++.++..++... +|.++|..
T Consensus 35 ~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~-k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~ 105 (265)
T COG3883 35 NQDSKLSELQKEKKNIQNEIESLDNQIEEIQS-KIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKK 105 (265)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777777777777777766666543 234566666666677777777766665443 77777755
No 52
>PF00523 Fusion_gly: Fusion glycoprotein F0; InterPro: IPR000776 The fusion glycoproteins from this family are found in ssRNA negative-strand viruses. This protein directs fusion of viral and cellular membranes, resulting in viral penetration, and can direct fusion of infected cells with adjoining cells, resulting in the formation of syncytia. The mature form is a dimer of polypeptides F1 and F2 linked by a disulphide bond [].; GO: 0006948 induction by virus of host cell-cell fusion; PDB: 2FYZ_D 3MAW_B 4DAG_A 1G5G_D 1SVF_A 2B9B_A 1G2C_M 3RRT_A 3RRR_D 3RKI_A ....
Probab=80.90 E-value=0.83 Score=41.29 Aligned_cols=20 Identities=20% Similarity=0.375 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 047357 5 FEGYERQYCELSTNLSRKCS 24 (219)
Q Consensus 5 f~~ye~e~~~~~~~i~~~l~ 24 (219)
.+.|..-+..++.=+...+.
T Consensus 50 l~~Y~~tl~~Ll~Pi~~~l~ 69 (490)
T PF00523_consen 50 LDEYNNTLTELLTPIQDNLN 69 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHH
Confidence 34444444444444443333
No 53
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=80.79 E-value=12 Score=23.75 Aligned_cols=62 Identities=19% Similarity=0.168 Sum_probs=46.1
Q ss_pred HHHhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhHhHHHHH
Q 047357 119 RLAMSVERINQSGERIRESRRVMLETEELGISIVEDLNQQRETLLNSRNKLHGVDDAISKSK 180 (219)
Q Consensus 119 ~l~~~~~~l~~~~~~L~~s~~~~~ete~~g~~i~~~L~~Qre~L~~~~~~~~~i~~~l~~s~ 180 (219)
.++++++.+.++...++++..++.++..-=..=.+.|..=+.++..+...+......+....
T Consensus 2 ~l~~e~~~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s~~~l~~I~ 63 (66)
T PF12352_consen 2 RLLRESDSLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKSNSLLKRIS 63 (66)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 46667777777777788887777777666555567778888888888888888777776654
No 54
>PF12669 P12: Virus attachment protein p12 family
Probab=80.69 E-value=1 Score=28.39 Aligned_cols=8 Identities=13% Similarity=0.214 Sum_probs=3.4
Q ss_pred HHHHhhcc
Q 047357 211 ILFYKLSH 218 (219)
Q Consensus 211 vi~~k~~~ 218 (219)
+++.+++|
T Consensus 15 v~~r~~~k 22 (58)
T PF12669_consen 15 VAIRKFIK 22 (58)
T ss_pred HHHHHHHH
Confidence 33444443
No 55
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=80.23 E-value=16 Score=24.90 Aligned_cols=57 Identities=19% Similarity=0.327 Sum_probs=40.9
Q ss_pred HHHHHchHHHHHHHHHHHHHHHhc--CChhHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Q 047357 39 YSEIQSGLDDADALIRKMDLEARS--LQPNVKAMLLAKLREYKSDLNKLKREFKRVSSS 95 (219)
Q Consensus 39 ~~~~~~~l~~a~~~~~~m~~E~~~--~~~~~r~~~~~k~~~~~~~l~~l~~~~~~~~~~ 95 (219)
+..++..+.++...++.++.-++. +||..|..+...+...++.+..+++++..++..
T Consensus 7 Id~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~LrkE 65 (85)
T PF15188_consen 7 IDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLLRKE 65 (85)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHHHHh
Confidence 455666677777777777765553 567778888888888888888888888777643
No 56
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=79.85 E-value=2.7 Score=27.10 Aligned_cols=18 Identities=28% Similarity=0.299 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 047357 199 SIIVALVIAIIFILFYKL 216 (219)
Q Consensus 199 ~ii~~l~~~i~~vi~~k~ 216 (219)
+.+++|++++++++|--+
T Consensus 6 iLi~ICVaii~lIlY~iY 23 (68)
T PF05961_consen 6 ILIIICVAIIGLILYGIY 23 (68)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345556666666666433
No 57
>COG1256 FlgK Flagellar hook-associated protein [Cell motility and secretion]
Probab=78.93 E-value=22 Score=32.85 Aligned_cols=78 Identities=10% Similarity=0.181 Sum_probs=43.8
Q ss_pred HHHHHHHHhhhhhcCCC-ChhHHHHHHHHHHchHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047357 14 ELSTNLSRKCSSASLLP-DGDQKKEKYSEIQSGLDDADALIRKMDLEARSLQPNVKAMLLAKLREYKSDLNKLKREFKRV 92 (219)
Q Consensus 14 ~~~~~i~~~l~~~~~~~-~~~~~~~~~~~~~~~l~~a~~~~~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~~l~~~~~~~ 92 (219)
..++++-..+..+.+.| +..-|...+.+++.....+.++..+++.-=... ...-.....++-++-++++++.+++.+.
T Consensus 111 ~~L~~ff~s~q~la~~P~~~a~r~~vl~~a~~l~~~in~~~~~L~~l~~~i-~~~I~~~V~~vNsLl~qIa~lN~qI~~~ 189 (552)
T COG1256 111 TLLNDFFNSLQELASNPSDTAARQAVLSKAQTLVNQINNTYEQLTDLRKDI-NAEIAATVDEVNSLLKQIADLNKQIRKV 189 (552)
T ss_pred HHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444455554443 346777778888877777777777666521122 1222345555666666666666666554
No 58
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=78.82 E-value=35 Score=28.01 Aligned_cols=43 Identities=5% Similarity=0.067 Sum_probs=23.2
Q ss_pred HHHHchHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHH
Q 047357 40 SEIQSGLDDADALIRKMDLEARSLQPNVKAMLLAKLREYKSDL 82 (219)
Q Consensus 40 ~~~~~~l~~a~~~~~~m~~E~~~~~~~~r~~~~~k~~~~~~~l 82 (219)
-.++..+..+++.+.+++.+....++..=..|..++..++..+
T Consensus 27 ~rl~~yv~~L~~~l~~L~~~~~~~s~e~l~eY~~ri~~Lk~l~ 69 (251)
T PF09753_consen 27 WRLEKYVETLREMLEELEESLSKPSKEVLNEYSERIDFLKGLI 69 (251)
T ss_pred HhHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHH
Confidence 3556667777777777777633332322335555555544433
No 59
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=77.97 E-value=11 Score=29.16 Aligned_cols=57 Identities=11% Similarity=0.250 Sum_probs=44.0
Q ss_pred HHHHHHHchHHHHHHHHHHHHHHHhcCChhH-HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 047357 37 EKYSEIQSGLDDADALIRKMDLEARSLQPNV-KAMLLAKLREYKSDLNKLKREFKRVS 93 (219)
Q Consensus 37 ~~~~~~~~~l~~a~~~~~~m~~E~~~~~~~~-r~~~~~k~~~~~~~l~~l~~~~~~~~ 93 (219)
.-+..++..++++...+..|+.|++.+++.. -.+++..+..++.++..+...+..++
T Consensus 86 ~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k 143 (201)
T KOG4603|consen 86 GKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIK 143 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467788899999999999999999887543 35677777777777777777776655
No 60
>PHA02844 putative transmembrane protein; Provisional
Probab=77.53 E-value=4.7 Score=26.53 Aligned_cols=19 Identities=21% Similarity=0.378 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHhhcc
Q 047357 200 IIVALVIAIIFILFYKLSH 218 (219)
Q Consensus 200 ii~~l~~~i~~vi~~k~~~ 218 (219)
++.++++++++.+|+|..|
T Consensus 55 i~~v~~~~~~~flYLK~~~ 73 (75)
T PHA02844 55 IIFVVFATFLTFLYLKAVP 73 (75)
T ss_pred HHHHHHHHHHHHHHHheec
Confidence 4444455566678888765
No 61
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=77.15 E-value=18 Score=25.51 Aligned_cols=38 Identities=18% Similarity=0.302 Sum_probs=29.4
Q ss_pred HHHHHhhHHHHHhhhhhhhhhHhHHHHHHHHHHHHHHH
Q 047357 153 EDLNQQRETLLNSRNKLHGVDDAISKSKKVLSSMSRRM 190 (219)
Q Consensus 153 ~~L~~Qre~L~~~~~~~~~i~~~l~~s~~~l~~m~rr~ 190 (219)
+....|.|+|......+...+..|......|..|+.|.
T Consensus 60 e~V~~QGEqIkel~~e~k~qgktL~~I~~~L~~inkRL 97 (102)
T PF01519_consen 60 EKVDKQGEQIKELQVEQKAQGKTLQLILKTLQSINKRL 97 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777777788888888888888888875
No 62
>PRK14762 membrane protein; Provisional
Probab=76.89 E-value=3.1 Score=21.28 Aligned_cols=15 Identities=20% Similarity=0.525 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHH
Q 047357 194 KWIVGSIIVALVIAI 208 (219)
Q Consensus 194 k~Il~~ii~~l~~~i 208 (219)
|+++|++.+++++++
T Consensus 2 ki~lw~i~iifligl 16 (27)
T PRK14762 2 KIILWAVLIIFLIGL 16 (27)
T ss_pred eeHHHHHHHHHHHHH
Confidence 456666555544443
No 63
>PHA02819 hypothetical protein; Provisional
Probab=76.70 E-value=5.3 Score=25.99 Aligned_cols=19 Identities=16% Similarity=0.530 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHhhcc
Q 047357 200 IIVALVIAIIFILFYKLSH 218 (219)
Q Consensus 200 ii~~l~~~i~~vi~~k~~~ 218 (219)
++.++++++++.+|+|..|
T Consensus 53 l~~~~~~~~~~flYLK~~~ 71 (71)
T PHA02819 53 LVTIVFVIIFIIFYLKVIK 71 (71)
T ss_pred HHHHHHHHHHHHHHHHhcC
Confidence 4444455566677887653
No 64
>PHA03049 IMV membrane protein; Provisional
Probab=76.62 E-value=4 Score=26.21 Aligned_cols=18 Identities=17% Similarity=0.314 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 047357 199 SIIVALVIAIIFILFYKL 216 (219)
Q Consensus 199 ~ii~~l~~~i~~vi~~k~ 216 (219)
+.+++|++++++++|--+
T Consensus 6 ~l~iICVaIi~lIvYgiY 23 (68)
T PHA03049 6 ILVIICVVIIGLIVYGIY 23 (68)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345556666666666433
No 65
>PRK11519 tyrosine kinase; Provisional
Probab=76.20 E-value=75 Score=30.43 Aligned_cols=53 Identities=19% Similarity=0.230 Sum_probs=27.4
Q ss_pred HHHHHHchHHHHHHHHHHHHHHHhcCCh-hHHHHHHHHHHHHHHHHHHHHHHHH
Q 047357 38 KYSEIQSGLDDADALIRKMDLEARSLQP-NVKAMLLAKLREYKSDLNKLKREFK 90 (219)
Q Consensus 38 ~~~~~~~~l~~a~~~~~~m~~E~~~~~~-~~r~~~~~k~~~~~~~l~~l~~~~~ 90 (219)
.+..++..+++++..+..+..+-..++. ..-....+.+..++..+.+++....
T Consensus 275 ql~~l~~~L~~aE~~l~~fr~~~~~vd~~~ea~~~l~~~~~l~~ql~~l~~~~~ 328 (719)
T PRK11519 275 QLPEVRSRLDVAENKLNAFRQDKDSVDLPLEAKAVLDSMVNIDAQLNELTFKEA 328 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555566666666666555443332 2223445555666666665544443
No 66
>PHA03164 hypothetical protein; Provisional
Probab=75.84 E-value=3.7 Score=27.14 Aligned_cols=20 Identities=25% Similarity=0.725 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 047357 195 WIVGSIIVALVIAIIFILFY 214 (219)
Q Consensus 195 ~Il~~ii~~l~~~i~~vi~~ 214 (219)
+|+.++++.+++.|+||+|.
T Consensus 61 lvLtgLaIamILfiifvlyv 80 (88)
T PHA03164 61 LVLTGLAIAMILFIIFVLYV 80 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 44555555566666666664
No 67
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.60 E-value=19 Score=23.39 Aligned_cols=17 Identities=29% Similarity=0.384 Sum_probs=7.5
Q ss_pred hhHHHHHHHHHHHHHHH
Q 047357 3 EVFEGYERQYCELSTNL 19 (219)
Q Consensus 3 ~~f~~ye~e~~~~~~~i 19 (219)
++|+..|.-++..++.|
T Consensus 4 Ev~ekLE~KiqqAvdTI 20 (79)
T COG3074 4 EVFEKLEAKVQQAIDTI 20 (79)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555444444433333
No 68
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=75.14 E-value=46 Score=28.70 Aligned_cols=26 Identities=15% Similarity=0.187 Sum_probs=19.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhcC
Q 047357 3 EVFEGYERQYCELSTNLSRKCSSASL 28 (219)
Q Consensus 3 ~~f~~ye~e~~~~~~~i~~~l~~~~~ 28 (219)
+.|++.++||+.+.+.-..-...++.
T Consensus 4 eEW~eL~~efq~Lqethr~Y~qKlee 29 (330)
T PF07851_consen 4 EEWEELQKEFQELQETHRSYKQKLEE 29 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888888988888877766555543
No 69
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=74.63 E-value=3.9 Score=23.61 Aligned_cols=16 Identities=6% Similarity=0.198 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHhhc
Q 047357 202 VALVIAIIFILFYKLS 217 (219)
Q Consensus 202 ~~l~~~i~~vi~~k~~ 217 (219)
++.+.+++.++|-||.
T Consensus 19 lv~i~iva~~iYRKw~ 34 (43)
T PF08114_consen 19 LVGIGIVALFIYRKWQ 34 (43)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344556667777774
No 70
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=74.38 E-value=48 Score=27.35 Aligned_cols=79 Identities=18% Similarity=0.297 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCCCChhHHHHHHHHHHchHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHH
Q 047357 7 GYERQYCELSTNLSRKCSSASLLPDGDQKKEKYSEIQSGLDDADALIRKMDLEARSLQPNVKAMLLAKLREYKSDLNKLK 86 (219)
Q Consensus 7 ~ye~e~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~~l~ 86 (219)
+....+..+...|...+..+..+ ++..-...-..+...+.+++..++.|.. +.+.+ .+......+.....-+..++
T Consensus 91 ~L~~~i~~l~~~i~~l~~~~~~l-~~~~~~~~~~~l~~~l~ea~~mL~emr~--r~f~~-~~~~Ae~El~~A~~LL~~v~ 166 (264)
T PF06008_consen 91 DLEQFIQNLQDNIQELIEQVESL-NENGDQLPSEDLQRALAEAQRMLEEMRK--RDFTP-QRQNAEDELKEAEDLLSRVQ 166 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-CcccCCCCHHHHHHHHHHHHHHHHHHHh--ccchh-HHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666555443 1100001114566666666666666654 23332 22334444444444444455
Q ss_pred HHH
Q 047357 87 REF 89 (219)
Q Consensus 87 ~~~ 89 (219)
..|
T Consensus 167 ~~~ 169 (264)
T PF06008_consen 167 KWF 169 (264)
T ss_pred HHH
Confidence 444
No 71
>PF06363 Picorna_P3A: Picornaviridae P3A protein; InterPro: IPR009419 The viral polyprotein of parechoviruses contains: coat protein VP0 (P1AB); coat protein VP3 (P1C); coat protein VP1 (P1D); picornain 2A (3.4.22.29 from EC, core protein P2A); core protein P2B; core protein P2C; core protein P3A; genome-linked protein VPg (P3B); picornain 3C (3.4.22.28 from EC, MEROPS peptidase subfamily 3CF: parechovirus picornain 3C (P3C))[]. This entry consists of the parechovirus P3A protein. P3A has been identified as a genome-linked protein (VPg), which is involved in replication [].; GO: 0019012 virion
Probab=74.37 E-value=16 Score=25.17 Aligned_cols=45 Identities=22% Similarity=0.155 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 047357 175 AISKSKKVLSSMSRRMTRNKWIVGSIIVALVIAIIFILFYKLSHH 219 (219)
Q Consensus 175 ~l~~s~~~l~~m~rr~~~dk~Il~~ii~~l~~~i~~vi~~k~~~~ 219 (219)
.++-....+++|..=+.+||..+.++-++-.++-++.+.++++||
T Consensus 50 v~~W~~~k~k~~~~FV~RNk~W~T~~S~~tS~isIL~LV~~~~KK 94 (100)
T PF06363_consen 50 VKSWVKNKMKSMLSFVERNKAWFTVVSAVTSFISILLLVTKIFKK 94 (100)
T ss_pred HHHHHHHHHHHHHHHHHHcchHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 344556667778888889998887666655555555566667765
No 72
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=74.03 E-value=28 Score=24.58 Aligned_cols=56 Identities=20% Similarity=0.335 Sum_probs=44.2
Q ss_pred HHHHHHHchHHHHHHHHHHHHHHHhcCChhH-HHHHHHHHHHHHHHHHHHHHHHHhh
Q 047357 37 EKYSEIQSGLDDADALIRKMDLEARSLQPNV-KAMLLAKLREYKSDLNKLKREFKRV 92 (219)
Q Consensus 37 ~~~~~~~~~l~~a~~~~~~m~~E~~~~~~~~-r~~~~~k~~~~~~~l~~l~~~~~~~ 92 (219)
.-+..+...+...+.-+..+|.++..+|... =..+.-.+.+.+.++..+...++.+
T Consensus 35 ~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v 91 (106)
T PF10805_consen 35 EDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGV 91 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4466777888888999999999999999653 3577778888888888888777655
No 73
>PF12495 Vip3A_N: Vegetative insecticide protein 3A N terminal ; InterPro: IPR022180 This family of proteins is found in bacteria. Proteins in this family are typically between 170 and 789 amino acids in length. The family is found in association with PF02018 from PFAM. Vip3A represents a novel class of proteins insecticidal to lepidopteran insect larvae.
Probab=73.47 E-value=22 Score=25.96 Aligned_cols=85 Identities=15% Similarity=0.239 Sum_probs=62.0
Q ss_pred HHHhhHHHhhhhhHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhHHHHHhhhhhhhhhHhHHHHHHHHHHHHHHHH
Q 047357 119 RLAMSVERINQSGERIRESRRVMLETEELG-------ISIVEDLNQQRETLLNSRNKLHGVDDAISKSKKVLSSMSRRMT 191 (219)
Q Consensus 119 ~l~~~~~~l~~~~~~L~~s~~~~~ete~~g-------~~i~~~L~~Qre~L~~~~~~~~~i~~~l~~s~~~l~~m~rr~~ 191 (219)
.++++++-++.-++.|+....-+.+...+| .+++.--.+|...|..++.+++.+.+.+..--.-+..|...++
T Consensus 39 eilknq~lln~is~kldging~l~dliaqgnln~el~ke~lkianeqn~~ln~vn~~l~~in~~l~~ylpkitsmls~vm 118 (177)
T PF12495_consen 39 EILKNQQLLNQISDKLDGINGSLNDLIAQGNLNSELSKEILKIANEQNQMLNNVNNQLNSINSMLNTYLPKITSMLSDVM 118 (177)
T ss_pred HHHHhHHHHHHhcccccccCCcHHHHHHcCCccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 355666666666666666555555555444 4556666789999999999999999999888888888888888
Q ss_pred HHHHHHHHHHHH
Q 047357 192 RNKWIVGSIIVA 203 (219)
Q Consensus 192 ~dk~Il~~ii~~ 203 (219)
+....+.+-|-.
T Consensus 119 kqny~lslqie~ 130 (177)
T PF12495_consen 119 KQNYVLSLQIEF 130 (177)
T ss_pred HhhhhhhhhHHH
Confidence 888777665543
No 74
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=73.30 E-value=5.8 Score=26.02 Aligned_cols=19 Identities=42% Similarity=0.663 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 047357 198 GSIIVALVIAIIFILFYKL 216 (219)
Q Consensus 198 ~~ii~~l~~~i~~vi~~k~ 216 (219)
.++|+++++++++.+|+|.
T Consensus 53 i~ii~v~ii~~l~flYLK~ 71 (72)
T PF12575_consen 53 ISIIFVLIIVLLTFLYLKL 71 (72)
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 3344444444445666663
No 75
>PRK11637 AmiB activator; Provisional
Probab=73.20 E-value=67 Score=28.53 Aligned_cols=83 Identities=11% Similarity=0.101 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCC-ChhHHHHHHHHHHchHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHH
Q 047357 8 YERQYCELSTNLSRKCSSASLLP-DGDQKKEKYSEIQSGLDDADALIRKMDLEARSLQPNVKAMLLAKLREYKSDLNKLK 86 (219)
Q Consensus 8 ye~e~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~~~~~l~~a~~~~~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~~l~ 86 (219)
..++++.+..+|......+.... .-.+-...+..++..|..+...++..+.++...... -.....++...+.+++..+
T Consensus 45 ~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~e-i~~l~~eI~~~q~~l~~~~ 123 (428)
T PRK11637 45 NRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQ-IDELNASIAKLEQQQAAQE 123 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 44555555555555444443210 012222334445555555555555555554444322 1345555555555555555
Q ss_pred HHHHh
Q 047357 87 REFKR 91 (219)
Q Consensus 87 ~~~~~ 91 (219)
..+..
T Consensus 124 ~~l~~ 128 (428)
T PRK11637 124 RLLAA 128 (428)
T ss_pred HHHHH
Confidence 55543
No 76
>PF13800 Sigma_reg_N: Sigma factor regulator N-terminal
Probab=72.82 E-value=9.4 Score=26.34 Aligned_cols=27 Identities=15% Similarity=0.277 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047357 181 KVLSSMSRRMTRNKWIVGSIIVALVIA 207 (219)
Q Consensus 181 ~~l~~m~rr~~~dk~Il~~ii~~l~~~ 207 (219)
+++++..||.....+++.+++++++++
T Consensus 3 ~i~kK~K~k~~l~~~~isi~~~lvi~~ 29 (96)
T PF13800_consen 3 KILKKAKRKSRLRTVVISIISALVIFI 29 (96)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 456666666665555554444444333
No 77
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=72.70 E-value=4.9 Score=29.37 Aligned_cols=19 Identities=16% Similarity=0.350 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 047357 195 WIVGSIIVALVIAIIFILF 213 (219)
Q Consensus 195 ~Il~~ii~~l~~~i~~vi~ 213 (219)
+|++++++-++++|+|+.|
T Consensus 68 ~Ii~gv~aGvIg~Illi~y 86 (122)
T PF01102_consen 68 GIIFGVMAGVIGIILLISY 86 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred ehhHHHHHHHHHHHHHHHH
Confidence 3444444444444444444
No 78
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=72.56 E-value=48 Score=26.53 Aligned_cols=47 Identities=9% Similarity=0.118 Sum_probs=27.8
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhhhcCCCChhHHHHHHHHHHchHHHHHHHHHH
Q 047357 2 SEVFEGYERQYCELSTNLSRKCSSASLLPDGDQKKEKYSEIQSGLDDADALIRK 55 (219)
Q Consensus 2 s~~f~~ye~e~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~ 55 (219)
+.-|+.|-..++.-+....+.++.+-.| ..+..++..+.+++..+..
T Consensus 4 ~~~~~~~~d~lq~~i~~as~~lNd~TGY-------s~Ie~LK~~i~~~E~~l~~ 50 (207)
T PF05546_consen 4 SKKLSFYMDSLQETIFTASQALNDVTGY-------SEIEKLKKSIEELEDELEA 50 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCh-------HHHHHHHHHHHHHHHHHHH
Confidence 4557777777777777777777777666 2234444444444444433
No 79
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=71.18 E-value=8.1 Score=29.80 Aligned_cols=46 Identities=24% Similarity=0.320 Sum_probs=26.2
Q ss_pred HHHHHchHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 047357 39 YSEIQSGLDDADALIRKMDLEARSLQPNVKAMLLAKLREYKSDLNKLKREF 89 (219)
Q Consensus 39 ~~~~~~~l~~a~~~~~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~~l~~~~ 89 (219)
+.++|.++.+|-+-.--||.|+ .+|..+...++++|.++.+|+.++
T Consensus 2 LeD~EsklN~AIERnalLE~EL-----dEKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESEL-----DEKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHCH--------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888888888888 567889999999999999999888
No 80
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=70.90 E-value=1.1 Score=31.23 Aligned_cols=18 Identities=6% Similarity=0.185 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHhhcc
Q 047357 201 IVALVIAIIFILFYKLSH 218 (219)
Q Consensus 201 i~~l~~~i~~vi~~k~~~ 218 (219)
++++.+++.|+.||.++|
T Consensus 76 ~~~v~~lv~~l~w~f~~r 93 (96)
T PTZ00382 76 VAVVGGLVGFLCWWFVCR 93 (96)
T ss_pred hhHHHHHHHHHhheeEEe
Confidence 333334455566665555
No 81
>PRK10132 hypothetical protein; Provisional
Probab=69.85 E-value=37 Score=24.18 Aligned_cols=53 Identities=17% Similarity=0.238 Sum_probs=28.6
Q ss_pred HHHHhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047357 161 TLLNSRNKLHGVDDAISKSKKVLSSMSRRMTRNKWIVGSIIVALVIAIIFILF 213 (219)
Q Consensus 161 ~L~~~~~~~~~i~~~l~~s~~~l~~m~rr~~~dk~Il~~ii~~l~~~i~~vi~ 213 (219)
.|..+++++.+.......++........-+..|-|--++|.+.+.+++++++.
T Consensus 53 ~L~~ar~~l~~~~~~~~~~~~a~~~~~~~V~~~Pw~svgiaagvG~llG~Ll~ 105 (108)
T PRK10132 53 LLKETRARMHGRTRVQQAARDAVGCADTFVRERPWCSVGTAAAVGIFIGALLS 105 (108)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHh
Confidence 44445555555444434444445544445555666666666666666665543
No 82
>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor. Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.
Probab=68.73 E-value=5.5 Score=31.32 Aligned_cols=26 Identities=19% Similarity=0.352 Sum_probs=12.2
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHhhcc
Q 047357 193 NKWIVGS-IIVALVIAIIFILFYKLSH 218 (219)
Q Consensus 193 dk~Il~~-ii~~l~~~i~~vi~~k~~~ 218 (219)
|-.-|++ ||+.|.+.-++++.|||.|
T Consensus 159 D~~SFiGGIVL~LGv~aI~ff~~KF~k 185 (186)
T PF05283_consen 159 DAASFIGGIVLTLGVLAIIFFLYKFCK 185 (186)
T ss_pred chhhhhhHHHHHHHHHHHHHHHhhhcc
Confidence 4444444 3333333333344577876
No 83
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=68.65 E-value=1.7e+02 Score=31.26 Aligned_cols=65 Identities=9% Similarity=0.138 Sum_probs=48.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhHhHHHHHHHHHHHHHHHH
Q 047357 127 INQSGERIRESRRVMLETEELGISIVEDLNQQRETLLNSRNKLHGVDDAISKSKKVLSSMSRRMT 191 (219)
Q Consensus 127 l~~~~~~L~~s~~~~~ete~~g~~i~~~L~~Qre~L~~~~~~~~~i~~~l~~s~~~l~~m~rr~~ 191 (219)
+....-.+++....+............-|..||.-+.++...+..+...+..++.-+..+.+...
T Consensus 400 le~~~lele~~~~~l~s~~eev~~~~p~lk~qr~~~e~~~~~~~~l~~el~~~~q~~~~~e~~~~ 464 (1822)
T KOG4674|consen 400 LESLKLELERLQNILSSFKEEVKQKAPILKEQRSELERMQETKAELSEELDFSNQKIQKLEKELE 464 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455666666666666666777778999999999999999999999888888877776543
No 84
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=68.59 E-value=2.7 Score=37.07 Aligned_cols=22 Identities=9% Similarity=0.209 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHhhccC
Q 047357 198 GSIIVALVIAIIFILFYKLSHH 219 (219)
Q Consensus 198 ~~ii~~l~~~i~~vi~~k~~~~ 219 (219)
+++|+++..++.|+.||.+.|.
T Consensus 374 vavvvvVgglvGfLcWwf~crg 395 (397)
T PF03302_consen 374 VAVVVVVGGLVGFLCWWFICRG 395 (397)
T ss_pred ehhHHHHHHHHHHHhhheeecc
Confidence 4566677778899999987763
No 85
>PRK10404 hypothetical protein; Provisional
Probab=68.49 E-value=37 Score=23.85 Aligned_cols=54 Identities=11% Similarity=0.071 Sum_probs=23.2
Q ss_pred HHHHHHHHHchHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHH
Q 047357 35 KKEKYSEIQSGLDDADALIRKMDLEARSLQPNVKAMLLAKLREYKSDLNKLKRE 88 (219)
Q Consensus 35 ~~~~~~~~~~~l~~a~~~~~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~~l~~~ 88 (219)
+.....++...++.++++++.-..+...--...|......+..-+..+.+....
T Consensus 7 ~~~l~~dl~~L~~dle~Ll~~~~~~a~e~~~~lR~r~~~~L~~ar~~l~~~~~~ 60 (101)
T PRK10404 7 DTRIDDDLTLLSETLEEVLRSSGDPADQKYVELKARAEKALDDVKKRVSQASDS 60 (101)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 334444555555555554443332222111223444445555555444444443
No 86
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=67.19 E-value=29 Score=21.86 Aligned_cols=14 Identities=14% Similarity=0.325 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHH
Q 047357 177 SKSKKVLSSMSRRM 190 (219)
Q Consensus 177 ~~s~~~l~~m~rr~ 190 (219)
..|+..+.+|.|+.
T Consensus 9 ETA~~FL~RvGr~q 22 (60)
T PF06072_consen 9 ETATEFLRRVGRQQ 22 (60)
T ss_pred ccHHHHHHHHhHHH
Confidence 34566677777765
No 87
>PF14937 DUF4500: Domain of unknown function (DUF4500)
Probab=67.10 E-value=7.3 Score=26.42 Aligned_cols=25 Identities=20% Similarity=0.336 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 047357 192 RNKWIVGSIIVALVIAIIFILFYKL 216 (219)
Q Consensus 192 ~dk~Il~~ii~~l~~~i~~vi~~k~ 216 (219)
-||.|+.+.++.+.++++++-|++.
T Consensus 35 PNk~iM~~Gl~a~~~c~gYi~Ym~~ 59 (86)
T PF14937_consen 35 PNKPIMAFGLIAITLCVGYIAYMHA 59 (86)
T ss_pred CCchhhHHHHHHHHHHHHHHHHHHH
Confidence 3899999988888888888888764
No 88
>PHA02975 hypothetical protein; Provisional
Probab=67.06 E-value=12 Score=24.21 Aligned_cols=19 Identities=37% Similarity=0.481 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q 047357 199 SIIVALVIAIIFILFYKLS 217 (219)
Q Consensus 199 ~ii~~l~~~i~~vi~~k~~ 217 (219)
+++.++++++++.+|+|..
T Consensus 50 ~i~~v~~~~~~~flYLK~~ 68 (69)
T PHA02975 50 FIIFITCIAVFTFLYLKLM 68 (69)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3444445556666777753
No 89
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=67.06 E-value=67 Score=26.06 Aligned_cols=29 Identities=17% Similarity=0.213 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHhhhhhhh
Q 047357 143 ETEELGISIVEDLNQQRETLLNSRNKLHG 171 (219)
Q Consensus 143 ete~~g~~i~~~L~~Qre~L~~~~~~~~~ 171 (219)
+++.+...+..++..+|+-+.++.+++..
T Consensus 110 ~tde~k~~~~~ei~k~r~e~~~ml~evK~ 138 (230)
T PF03904_consen 110 DTDELKNIAQNEIKKVREENKSMLQEVKQ 138 (230)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777888888899999888888777665
No 90
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=66.84 E-value=6.5 Score=33.33 Aligned_cols=9 Identities=33% Similarity=0.741 Sum_probs=3.7
Q ss_pred hHHHHHHHH
Q 047357 4 VFEGYERQY 12 (219)
Q Consensus 4 ~f~~ye~e~ 12 (219)
.|++|++-.
T Consensus 51 RF~EYdErm 59 (299)
T PF02009_consen 51 RFEEYDERM 59 (299)
T ss_pred HHHHHHhhh
Confidence 344444443
No 91
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=66.40 E-value=95 Score=27.53 Aligned_cols=28 Identities=11% Similarity=0.145 Sum_probs=16.2
Q ss_pred HHHHHHHchHHHHHHHHHHHHHHHhcCC
Q 047357 37 EKYSEIQSGLDDADALIRKMDLEARSLQ 64 (219)
Q Consensus 37 ~~~~~~~~~l~~a~~~~~~m~~E~~~~~ 64 (219)
..+..+...+.+++.....++..+..+.
T Consensus 212 ~~l~~~~~el~eik~~~~~L~~~~e~Lk 239 (395)
T PF10267_consen 212 LGLQKILEELREIKESQSRLEESIEKLK 239 (395)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666666666666555543
No 92
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=65.61 E-value=1.3e+02 Score=28.85 Aligned_cols=52 Identities=21% Similarity=0.282 Sum_probs=27.8
Q ss_pred HHHHHHchHHHHHHHHHHHHHHHhcCChh-HHHHHHHHHHHHHHHHHHHHHHH
Q 047357 38 KYSEIQSGLDDADALIRKMDLEARSLQPN-VKAMLLAKLREYKSDLNKLKREF 89 (219)
Q Consensus 38 ~~~~~~~~l~~a~~~~~~m~~E~~~~~~~-~r~~~~~k~~~~~~~l~~l~~~~ 89 (219)
.+..++..+.+++..+..+..+-..+.+. .-..+..++.+++..+..++...
T Consensus 275 qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~~~l~~ql~~l~~~~ 327 (726)
T PRK09841 275 QLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNELTFRE 327 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666666554433322 22345556666666666655444
No 93
>PF06716 DUF1201: Protein of unknown function (DUF1201); InterPro: IPR009591 This entry consists of several Beet yellows virus (BYV) putative membrane-binding proteins of around 54 residues in length. The function of this currently unknown.
Probab=65.55 E-value=14 Score=22.00 Aligned_cols=19 Identities=5% Similarity=0.230 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 047357 196 IVGSIIVALVIAIIFILFY 214 (219)
Q Consensus 196 Il~~ii~~l~~~i~~vi~~ 214 (219)
.+.+..++|+++.+++++.
T Consensus 10 ~~~F~~lIC~Fl~~~~~F~ 28 (54)
T PF06716_consen 10 LLAFGFLICLFLFCLVVFI 28 (54)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555555554444443
No 94
>PF15106 TMEM156: TMEM156 protein family
Probab=64.83 E-value=8.6 Score=30.68 Aligned_cols=24 Identities=21% Similarity=0.409 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 047357 194 KWIVGSIIVALVIAIIFILFYKLS 217 (219)
Q Consensus 194 k~Il~~ii~~l~~~i~~vi~~k~~ 217 (219)
|+.-|++|++++++.++++++|++
T Consensus 175 KITWYvLVllVfiflii~iI~KIl 198 (226)
T PF15106_consen 175 KITWYVLVLLVFIFLIILIIYKIL 198 (226)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 555565555444444445556665
No 95
>PHA03054 IMV membrane protein; Provisional
Probab=64.72 E-value=13 Score=24.21 Aligned_cols=17 Identities=18% Similarity=0.665 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHhh
Q 047357 200 IIVALVIAIIFILFYKL 216 (219)
Q Consensus 200 ii~~l~~~i~~vi~~k~ 216 (219)
++.++++++++.+|+|.
T Consensus 55 l~~v~~~~l~~flYLK~ 71 (72)
T PHA03054 55 FFIVLILLLLIYLYLKV 71 (72)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 44444455555667764
No 96
>PHA02692 hypothetical protein; Provisional
Probab=64.47 E-value=12 Score=24.32 Aligned_cols=17 Identities=24% Similarity=0.452 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHhh
Q 047357 200 IIVALVIAIIFILFYKL 216 (219)
Q Consensus 200 ii~~l~~~i~~vi~~k~ 216 (219)
+++++++++++.+|+|.
T Consensus 53 ~~~~~~~vll~flYLK~ 69 (70)
T PHA02692 53 LIAAAIGVLLCFHYLKL 69 (70)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 44444455556677774
No 97
>KOG1693 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.29 E-value=34 Score=27.17 Aligned_cols=50 Identities=24% Similarity=0.393 Sum_probs=23.8
Q ss_pred hhhhhhHhHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHhhc
Q 047357 168 KLHGVDDAISKSKKVLSSMSRRMTRNK------------WIVGSIIVALVIAIIFILFYKLS 217 (219)
Q Consensus 168 ~~~~i~~~l~~s~~~l~~m~rr~~~dk------------~Il~~ii~~l~~~i~~vi~~k~~ 217 (219)
-+..|+.+|....+..+...-|..+|+ |-++.+++++++.|+=|+.+|+|
T Consensus 139 a~~~I~~~L~~I~~~q~y~R~RE~rn~~tv~st~~Rv~~~Sl~e~~~vv~iSi~Qv~ilk~f 200 (209)
T KOG1693|consen 139 AIVEIHRALNKIDDTQTYYRLREARNRSTVESTNSRVTWWSLLEIIAVVVISIAQVFILKFF 200 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCccchhcccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444432 33344555555555555556554
No 98
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=63.96 E-value=39 Score=23.91 Aligned_cols=11 Identities=27% Similarity=0.443 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 047357 75 LREYKSDLNKL 85 (219)
Q Consensus 75 ~~~~~~~l~~l 85 (219)
+++-+..+...
T Consensus 50 Lk~~r~rl~~~ 60 (104)
T COG4575 50 LKEARDRLGDT 60 (104)
T ss_pred HHHHHHHHHhh
Confidence 33333333333
No 99
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=63.53 E-value=1.7e+02 Score=29.40 Aligned_cols=23 Identities=17% Similarity=0.212 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcC
Q 047357 6 EGYERQYCELSTNLSRKCSSASL 28 (219)
Q Consensus 6 ~~ye~e~~~~~~~i~~~l~~~~~ 28 (219)
..++.++..+.+.|..+=...++
T Consensus 277 ~~~~~ql~~~~~~i~~~qek~~~ 299 (1074)
T KOG0250|consen 277 NEVERQLNNQEEEIKKKQEKVDT 299 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666655444443
No 100
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=63.17 E-value=43 Score=22.41 Aligned_cols=23 Identities=13% Similarity=0.157 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 047357 68 KAMLLAKLREYKSDLNKLKREFK 90 (219)
Q Consensus 68 r~~~~~k~~~~~~~l~~l~~~~~ 90 (219)
|..+..+-.+++.+....+..++
T Consensus 48 r~~L~~en~qLk~E~~~WqerLr 70 (79)
T PRK15422 48 REELERENNHLKEQQNGWQERLQ 70 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666655554
No 101
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=62.81 E-value=72 Score=27.51 Aligned_cols=92 Identities=13% Similarity=0.256 Sum_probs=54.7
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhHhHHHHHHHHHHHHHHHHH--H-----HHHHH
Q 047357 126 RINQSGERIRESRRVMLETEELGISIVEDLNQQRETLLNSRNKLHGVDDAISKSKKVLSSMSRRMTR--N-----KWIVG 198 (219)
Q Consensus 126 ~l~~~~~~L~~s~~~~~ete~~g~~i~~~L~~Qre~L~~~~~~~~~i~~~l~~s~~~l~~m~rr~~~--d-----k~Il~ 198 (219)
.+......|...+..+.+.+.-=.....++..--.........+..+...+.+|.+++..+..-..+ . .--+.
T Consensus 229 ~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~~~~~l~~~~~ 308 (344)
T PF12777_consen 229 ELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERWSEQIEELEEQLK 308 (344)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHHHHHHHHHHHhc
Confidence 3444455566666655555554444444444444455666677788888999999999888765332 1 11123
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q 047357 199 SIIVALVIAIIFILFYKLS 217 (219)
Q Consensus 199 ~ii~~l~~~i~~vi~~k~~ 217 (219)
.+++=++++-+|+.|+..|
T Consensus 309 ~l~GD~llaaa~isY~G~f 327 (344)
T PF12777_consen 309 NLVGDSLLAAAFISYLGPF 327 (344)
T ss_dssp HHHHHHHHHHHHHHCCCCT
T ss_pred ccHHHHHHHHHHHHHcCCC
Confidence 3455555666777776544
No 102
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=62.37 E-value=71 Score=30.94 Aligned_cols=21 Identities=14% Similarity=0.080 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhh
Q 047357 6 EGYERQYCELSTNLSRKCSSA 26 (219)
Q Consensus 6 ~~ye~e~~~~~~~i~~~l~~~ 26 (219)
.....++..+++++...-..+
T Consensus 507 ~~~~~~~~~li~~L~~~~~~~ 527 (771)
T TIGR01069 507 GEFKEEINVLIEKLSALEKEL 527 (771)
T ss_pred HhhHHHHHHHHHHHHHHHHHH
Confidence 344445555555555444443
No 103
>PRK09759 small toxic polypeptide; Provisional
Probab=61.68 E-value=7 Score=23.77 Aligned_cols=21 Identities=24% Similarity=0.358 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 047357 193 NKWIVGSIIVALVIAIIFILF 213 (219)
Q Consensus 193 dk~Il~~ii~~l~~~i~~vi~ 213 (219)
.|..+++++++|+.+++|++.
T Consensus 3 ~k~~l~~liivCiTvL~f~~l 23 (50)
T PRK09759 3 QKYRLLSLIVICFTLLFFTWM 23 (50)
T ss_pred ceeeHHHHHHHHHHHHHHHHH
Confidence 456677778888777766543
No 104
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=61.55 E-value=11 Score=30.20 Aligned_cols=19 Identities=32% Similarity=0.583 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 047357 196 IVGSIIVALVIAIIFILFY 214 (219)
Q Consensus 196 Il~~ii~~l~~~i~~vi~~ 214 (219)
++++||+.++++||.++|+
T Consensus 131 LIClIIIAVLfLICT~LfL 149 (227)
T PF05399_consen 131 LICLIIIAVLFLICTLLFL 149 (227)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344555555556655554
No 105
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=61.43 E-value=66 Score=25.82 Aligned_cols=33 Identities=30% Similarity=0.422 Sum_probs=18.6
Q ss_pred HHHHhhhhhhhhhHhHHHHHHHHHHHHHHHHHH
Q 047357 161 TLLNSRNKLHGVDDAISKSKKVLSSMSRRMTRN 193 (219)
Q Consensus 161 ~L~~~~~~~~~i~~~l~~s~~~l~~m~rr~~~d 193 (219)
-|.+...++.+.+-+++.+..+++.+.-|...-
T Consensus 16 ~L~rle~qi~q~~~~~~~~qs~l~~~~~r~tv~ 48 (251)
T COG5415 16 DLSRLESQIHQLDVALKKSQSILSQWQSRLTVY 48 (251)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 344555555555566666666666666554443
No 106
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=61.32 E-value=38 Score=21.27 Aligned_cols=24 Identities=13% Similarity=0.127 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 047357 180 KKVLSSMSRRMTRNKWIVGSIIVA 203 (219)
Q Consensus 180 ~~~l~~m~rr~~~dk~Il~~ii~~ 203 (219)
..+++.=.+|...-.++++++.++
T Consensus 30 ~eil~ker~R~r~~~~~~~li~aL 53 (64)
T COG4068 30 GEILNKERKRQRNFMILMFLILAL 53 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555455555444555544444
No 107
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=60.67 E-value=48 Score=22.15 Aligned_cols=47 Identities=4% Similarity=0.131 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHHHHHHHHh---hhhhcCCCChhHHHHHHHHHHchHHHHH
Q 047357 4 VFEGYERQYCELSTNLSRK---CSSASLLPDGDQKKEKYSEIQSGLDDAD 50 (219)
Q Consensus 4 ~f~~ye~e~~~~~~~i~~~---l~~~~~~~~~~~~~~~~~~~~~~l~~a~ 50 (219)
++...+.||..+--+.... +..++...+...|..+..+++..++.++
T Consensus 18 vl~~LqDE~~hm~~e~~~L~~~~~~~d~s~~~~~R~~L~~~l~~lv~~mE 67 (79)
T PF06657_consen 18 VLKALQDEFGHMKMEHQELQDEYKQMDPSLGRRKRRDLEQELEELVKRME 67 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHHH
Confidence 4444444544444443333 4444332122344444444444443333
No 108
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=60.20 E-value=13 Score=25.03 Aligned_cols=11 Identities=45% Similarity=1.008 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q 047357 204 LVIAIIFILFY 214 (219)
Q Consensus 204 l~~~i~~vi~~ 214 (219)
|+++|++|+++
T Consensus 34 LVIIiLlImlf 44 (85)
T PF10717_consen 34 LVIIILLIMLF 44 (85)
T ss_pred HHHHHHHHHHH
Confidence 33444444433
No 109
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=59.82 E-value=47 Score=21.80 Aligned_cols=24 Identities=13% Similarity=0.279 Sum_probs=11.4
Q ss_pred HHHHHchHHHHHHHHHHHHHHHhc
Q 047357 39 YSEIQSGLDDADALIRKMDLEARS 62 (219)
Q Consensus 39 ~~~~~~~l~~a~~~~~~m~~E~~~ 62 (219)
+..++.++..|-+.+..++.|+..
T Consensus 6 l~~LE~ki~~aveti~~Lq~e~ee 29 (72)
T PF06005_consen 6 LEQLEEKIQQAVETIALLQMENEE 29 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555554444443
No 110
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=59.76 E-value=1.5e+02 Score=27.56 Aligned_cols=42 Identities=24% Similarity=0.245 Sum_probs=17.6
Q ss_pred HHHHHHHHHhcCCh--hHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 047357 52 LIRKMDLEARSLQP--NVKAMLLAKLREYKSDLNKLKREFKRVS 93 (219)
Q Consensus 52 ~~~~m~~E~~~~~~--~~r~~~~~k~~~~~~~l~~l~~~~~~~~ 93 (219)
+.+.|+.|+..-+. .....+...+...+.....+..++.++.
T Consensus 294 Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~ 337 (569)
T PRK04778 294 LYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVK 337 (569)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555443321 1122344444444444444444444443
No 111
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=59.66 E-value=1.5e+02 Score=27.53 Aligned_cols=54 Identities=22% Similarity=0.377 Sum_probs=24.4
Q ss_pred HHHHHHHHchHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 047357 36 KEKYSEIQSGLDDADALIRKMDLEARSLQPNVKAMLLAKLREYKSDLNKLKREFK 90 (219)
Q Consensus 36 ~~~~~~~~~~l~~a~~~~~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~~l~~~~~ 90 (219)
...+..+...+.++++....|...+.+++... .....++..++..+..+++.+.
T Consensus 378 ~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE-~~Ar~~l~~~~~~l~~ikR~le 431 (560)
T PF06160_consen 378 QEELEEIEEQLEEIEEEQEEINESLQSLRKDE-KEAREKLQKLKQKLREIKRRLE 431 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444322 2344445555555555555443
No 112
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=59.30 E-value=16 Score=23.61 Aligned_cols=22 Identities=23% Similarity=0.403 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 047357 195 WIVGSIIVALVIAIIFILFYKL 216 (219)
Q Consensus 195 ~Il~~ii~~l~~~i~~vi~~k~ 216 (219)
+|+.+|.++.+++|++-+|-|-
T Consensus 5 ~iLi~ICVaii~lIlY~iYnr~ 26 (68)
T PF05961_consen 5 FILIIICVAIIGLILYGIYNRK 26 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 5666666666777788888764
No 113
>PF11337 DUF3139: Protein of unknown function (DUF3139); InterPro: IPR021486 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=59.23 E-value=11 Score=25.52 Aligned_cols=11 Identities=36% Similarity=0.356 Sum_probs=4.8
Q ss_pred HHHHHHHHHHH
Q 047357 194 KWIVGSIIVAL 204 (219)
Q Consensus 194 k~Il~~ii~~l 204 (219)
|+|+.++++++
T Consensus 5 kii~iii~li~ 15 (85)
T PF11337_consen 5 KIILIIIILIV 15 (85)
T ss_pred HHHHHHHHHHH
Confidence 44544444443
No 114
>PHA02902 putative IMV membrane protein; Provisional
Probab=59.15 E-value=13 Score=23.81 Aligned_cols=7 Identities=0% Similarity=0.420 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 047357 193 NKWIVGS 199 (219)
Q Consensus 193 dk~Il~~ 199 (219)
|.+++.+
T Consensus 4 dtfvi~~ 10 (70)
T PHA02902 4 DTFVILA 10 (70)
T ss_pred hhHHHHH
Confidence 3344333
No 115
>PRK09738 small toxic polypeptide; Provisional
Probab=58.32 E-value=5.7 Score=24.36 Aligned_cols=21 Identities=14% Similarity=0.327 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 047357 193 NKWIVGSIIVALVIAIIFILF 213 (219)
Q Consensus 193 dk~Il~~ii~~l~~~i~~vi~ 213 (219)
++..+++++++|+.+++|.+.
T Consensus 5 ~~~~~~~livvCiTvL~f~~l 25 (52)
T PRK09738 5 RSPLVWCVLIVCLTLLIFTYL 25 (52)
T ss_pred cceehhhHHHHHHHHHHHHHH
Confidence 455667777777777766543
No 116
>PF04639 Baculo_E56: Baculoviral E56 protein, specific to ODV envelope; InterPro: IPR006733 This family represents the E56 protein, which is localized to the occlusion derived virus (ODV) envelope, but not to the budded virus (BV) envelope []. Signals necessary for transport and/or retention into this structure are believed to be found within the C-terminal portion of ODV-E56.; GO: 0019031 viral envelope
Probab=58.25 E-value=5.2 Score=33.42 Aligned_cols=21 Identities=24% Similarity=0.236 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 047357 195 WIVGSIIVALVIAIIFILFYK 215 (219)
Q Consensus 195 ~Il~~ii~~l~~~i~~vi~~k 215 (219)
+|+++.+++++++|+|++|..
T Consensus 280 iil~IG~vl~i~~Ig~~ifK~ 300 (305)
T PF04639_consen 280 IILIIGGVLLIVFIGYFIFKR 300 (305)
T ss_pred HHHHHHHHHHHHHhhheeeEe
Confidence 444444444445555544443
No 117
>PF06696 Strep_SA_rep: Streptococcal surface antigen repeat; InterPro: IPR009578 This family consists of a number of ~25 residue long repeats found commonly in Streptococcal surface antigens although one copy is present in the HPSR2-heavy chain potential motor protein of Giardia lamblia (Giardia intestinalis) (Q24984 from SWISSPROT). This family is often found in conjunction with IPR001899 from INTERPRO.; PDB: 3IOX_A 3IPK_A 2WD6_B 1JMM_A.
Probab=58.16 E-value=25 Score=18.10 Aligned_cols=21 Identities=24% Similarity=0.447 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 047357 70 MLLAKLREYKSDLNKLKREFK 90 (219)
Q Consensus 70 ~~~~k~~~~~~~l~~l~~~~~ 90 (219)
.|..++..|..+|..+++...
T Consensus 2 ~Yqakla~YqaeLa~vqk~na 22 (25)
T PF06696_consen 2 DYQAKLAQYQAELARVQKANA 22 (25)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHhh
Confidence 578888899999988887764
No 118
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=58.06 E-value=1e+02 Score=25.13 Aligned_cols=21 Identities=19% Similarity=0.284 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 047357 71 LLAKLREYKSDLNKLKREFKR 91 (219)
Q Consensus 71 ~~~k~~~~~~~l~~l~~~~~~ 91 (219)
....+.++..+|..++.+...
T Consensus 79 ~~~~i~r~~eey~~Lk~~in~ 99 (230)
T PF10146_consen 79 RQEKIQRLYEEYKPLKDEINE 99 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444433
No 119
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=57.52 E-value=32 Score=23.60 Aligned_cols=22 Identities=36% Similarity=0.523 Sum_probs=9.1
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHH
Q 047357 186 MSRRMTRN-KWIVGSIIVALVIA 207 (219)
Q Consensus 186 m~rr~~~d-k~Il~~ii~~l~~~ 207 (219)
+.+..... ++++++++++++.+
T Consensus 5 ~~~~~~~~~~l~i~l~~~v~~~a 27 (97)
T PF04999_consen 5 IIRDIKRQKKLIILLVIVVLISA 27 (97)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Confidence 34444444 33334344444333
No 120
>PTZ00046 rifin; Provisional
Probab=57.13 E-value=12 Score=32.51 Aligned_cols=11 Identities=27% Similarity=0.573 Sum_probs=5.1
Q ss_pred hhHHHHHHHHH
Q 047357 3 EVFEGYERQYC 13 (219)
Q Consensus 3 ~~f~~ye~e~~ 13 (219)
..|++|++-.+
T Consensus 70 QRF~EYdERM~ 80 (358)
T PTZ00046 70 QRFEEYDERMK 80 (358)
T ss_pred HHHHHHHHHHH
Confidence 34555554443
No 121
>PF04678 DUF607: Protein of unknown function, DUF607; InterPro: IPR006769 This entry represents the C-terminal domain of coiled-coil domain containing protein 109.
Probab=57.11 E-value=90 Score=24.23 Aligned_cols=20 Identities=10% Similarity=0.094 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 047357 194 KWIVGSIIVALVIAIIFILF 213 (219)
Q Consensus 194 k~Il~~ii~~l~~~i~~vi~ 213 (219)
+.+++++++++++-.+++.|
T Consensus 92 ~~~~w~gl~~l~~q~~~l~r 111 (180)
T PF04678_consen 92 RRLLWGGLALLVVQFGILAR 111 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555554444444433
No 122
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=56.89 E-value=58 Score=21.94 Aligned_cols=57 Identities=16% Similarity=0.174 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhcCC-------CCh-----hHHHHHHHHHHchHHHHHHHHHHHHHHH
Q 047357 4 VFEGYERQYCELSTNLSRKCSSASLL-------PDG-----DQKKEKYSEIQSGLDDADALIRKMDLEA 60 (219)
Q Consensus 4 ~f~~ye~e~~~~~~~i~~~l~~~~~~-------~~~-----~~~~~~~~~~~~~l~~a~~~~~~m~~E~ 60 (219)
.|-+.-.+++..+..|...+..+..+ ++. .+-..+..++...+..+...++.|+...
T Consensus 4 ~f~~~v~~i~~~i~~i~~~~~~l~~l~~~~l~~~~~d~~~~~el~~l~~~i~~~~~~~~~~lk~l~~~~ 72 (103)
T PF00804_consen 4 EFFDEVQEIREDIDKIKEKLNELRKLHKKILSSPDQDSELKRELDELTDEIKQLFQKIKKRLKQLSKDN 72 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455556666666666666655332 121 1223444555555566666666666553
No 123
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=56.71 E-value=1.3e+02 Score=25.94 Aligned_cols=52 Identities=13% Similarity=0.317 Sum_probs=25.1
Q ss_pred HHHHHchHHHHHHHHHHHHHHHhcCChhH-HHHHHHHHHHHHHHHHHHHHHHH
Q 047357 39 YSEIQSGLDDADALIRKMDLEARSLQPNV-KAMLLAKLREYKSDLNKLKREFK 90 (219)
Q Consensus 39 ~~~~~~~l~~a~~~~~~m~~E~~~~~~~~-r~~~~~k~~~~~~~l~~l~~~~~ 90 (219)
+..++..+.+++..+..+..+-..+.|.. .....+.+.+++.++..++.++.
T Consensus 179 l~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~ 231 (362)
T TIGR01010 179 VKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLA 231 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555554444444332 22344555555555555555554
No 124
>PRK10132 hypothetical protein; Provisional
Probab=56.63 E-value=64 Score=22.98 Aligned_cols=19 Identities=16% Similarity=0.181 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q 047357 7 GYERQYCELSTNLSRKCSS 25 (219)
Q Consensus 7 ~ye~e~~~~~~~i~~~l~~ 25 (219)
....|++.+..+++..+..
T Consensus 16 ~L~~Dl~~L~~~le~ll~~ 34 (108)
T PRK10132 16 DIQNDVNQLADSLESVLKS 34 (108)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433
No 125
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=56.55 E-value=89 Score=24.23 Aligned_cols=53 Identities=13% Similarity=0.276 Sum_probs=29.9
Q ss_pred HHHHHHHchHHHHHHHHHHHHHHHhcCChhH--HHHHHHHHHHHHHHHHHHHHHH
Q 047357 37 EKYSEIQSGLDDADALIRKMDLEARSLQPNV--KAMLLAKLREYKSDLNKLKREF 89 (219)
Q Consensus 37 ~~~~~~~~~l~~a~~~~~~m~~E~~~~~~~~--r~~~~~k~~~~~~~l~~l~~~~ 89 (219)
.+...++....+++.-+++++.++..+..-. -..+..+...+..+|+.++.+|
T Consensus 113 rL~~~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~eL~~F~~~y 167 (171)
T PF04799_consen 113 RLCQQVDQTKNELEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLESELERFQEQY 167 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344455555555555666666555554321 1356666677777777776666
No 126
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=56.45 E-value=12 Score=32.33 Aligned_cols=8 Identities=13% Similarity=0.364 Sum_probs=3.7
Q ss_pred HHHhhccC
Q 047357 212 LFYKLSHH 219 (219)
Q Consensus 212 i~~k~~~~ 219 (219)
+++++.||
T Consensus 331 LILRYRRK 338 (353)
T TIGR01477 331 LILRYRRK 338 (353)
T ss_pred HHHHhhhc
Confidence 33455554
No 127
>COG5665 NOT5 CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=56.44 E-value=1.4e+02 Score=26.29 Aligned_cols=55 Identities=7% Similarity=0.157 Sum_probs=40.1
Q ss_pred ChhHHHHHHHHHHchHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHH
Q 047357 31 DGDQKKEKYSEIQSGLDDADALIRKMDLEARSLQPNVKAMLLAKLREYKSDLNKL 85 (219)
Q Consensus 31 ~~~~~~~~~~~~~~~l~~a~~~~~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~~l 85 (219)
+...|..+...++..|+.++..-+|+...+.+-....+..+.+--+-....++.+
T Consensus 26 ~~s~~ekle~dlk~~ikklq~~rdqiktw~s~~dikdk~~l~~nrrlie~~me~f 80 (548)
T COG5665 26 NSSHREKLESDLKREIKKLQKHRDQIKTWLSKEDVKDKQVLMTNRRLIENGMERF 80 (548)
T ss_pred chhHHHHHhhHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHhHHHHHhHHHHH
Confidence 4477778888999999999999999999988877666666654444433344433
No 128
>PF12669 P12: Virus attachment protein p12 family
Probab=56.36 E-value=13 Score=23.33 Aligned_cols=20 Identities=40% Similarity=0.527 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 047357 196 IVGSIIVALVIAIIFILFYK 215 (219)
Q Consensus 196 Il~~ii~~l~~~i~~vi~~k 215 (219)
|+.+||++.++.+++.-++|
T Consensus 3 II~~Ii~~~~~~v~~r~~~k 22 (58)
T PF12669_consen 3 IIGIIILAAVAYVAIRKFIK 22 (58)
T ss_pred eHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444333343
No 129
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=56.04 E-value=14 Score=27.83 Aligned_cols=7 Identities=14% Similarity=0.406 Sum_probs=4.4
Q ss_pred HhhhccC
Q 047357 98 HEELLES 104 (219)
Q Consensus 98 r~~L~~~ 104 (219)
++.||..
T Consensus 70 k~~LF~~ 76 (145)
T PF10661_consen 70 KNSLFTN 76 (145)
T ss_pred HHHhCcC
Confidence 4577755
No 130
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=55.63 E-value=58 Score=21.58 Aligned_cols=46 Identities=11% Similarity=0.231 Sum_probs=32.7
Q ss_pred chHHHHHHHHHHHHHHHhcCCh-hHHHHHHHHHHHHHHHHHHHHHHH
Q 047357 44 SGLDDADALIRKMDLEARSLQP-NVKAMLLAKLREYKSDLNKLKREF 89 (219)
Q Consensus 44 ~~l~~a~~~~~~m~~E~~~~~~-~~r~~~~~k~~~~~~~l~~l~~~~ 89 (219)
..|.=.++.++.|--.++..|. +.+..|.+++.+|....+.|+...
T Consensus 24 eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr~ki~eY~~Rae~Lk~~v 70 (75)
T cd02682 24 DAITNYKKAIEVLSQIVKNYPDSPTRLIYEQMINEYKRRIEVLEKQN 70 (75)
T ss_pred HHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3344445555555555667774 457789999999999999998765
No 131
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=55.45 E-value=30 Score=20.40 Aligned_cols=22 Identities=18% Similarity=0.295 Sum_probs=10.9
Q ss_pred HHHHHHHHH-HHHHHHHHHHHhh
Q 047357 195 WIVGSIIVA-LVIAIIFILFYKL 216 (219)
Q Consensus 195 ~Il~~ii~~-l~~~i~~vi~~k~ 216 (219)
+|+.++|++ +++-|++.+|-|+
T Consensus 7 ~iFsvvIil~If~~iGl~IyQki 29 (49)
T PF11044_consen 7 TIFSVVIILGIFAWIGLSIYQKI 29 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 344443333 3334666777664
No 132
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=54.99 E-value=1.3e+02 Score=25.57 Aligned_cols=76 Identities=20% Similarity=0.196 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHhhhhhcCCC--ChhHHHHHHHHHHchHHHHHHHHHHHHHHHhcCCh--hHHHHHHHHHHHHHHHHHHHH
Q 047357 11 QYCELSTNLSRKCSSASLLP--DGDQKKEKYSEIQSGLDDADALIRKMDLEARSLQP--NVKAMLLAKLREYKSDLNKLK 86 (219)
Q Consensus 11 e~~~~~~~i~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~a~~~~~~m~~E~~~~~~--~~r~~~~~k~~~~~~~l~~l~ 86 (219)
.+...+.++.++.-.+..|. =-++-...+..++..+.++..|| |++|+..+.. ..+.+-..-+..-+.....|+
T Consensus 154 nIEKSvKDLqRctvSL~RYr~~lkee~d~S~k~ik~~F~~l~~cL--~dREvaLl~EmdkVK~EAmeiL~aRqkkAeeLk 231 (302)
T PF07139_consen 154 NIEKSVKDLQRCTVSLTRYRVVLKEEMDSSIKKIKQTFAELQSCL--MDREVALLAEMDKVKAEAMEILDARQKKAEELK 231 (302)
T ss_pred cHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677788888777776662 13777788999999999999999 6777665432 223444444444444444444
Q ss_pred HH
Q 047357 87 RE 88 (219)
Q Consensus 87 ~~ 88 (219)
+-
T Consensus 232 rl 233 (302)
T PF07139_consen 232 RL 233 (302)
T ss_pred HH
Confidence 33
No 133
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=54.95 E-value=81 Score=24.77 Aligned_cols=60 Identities=20% Similarity=0.454 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHchHHHHHHHHHHHHHHHhcC-----ChhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047357 33 DQKKEKYSEIQSGLDDADALIRKMDLEARSL-----QPNVKAMLLAKLREYKSDLNKLKREFKRV 92 (219)
Q Consensus 33 ~~~~~~~~~~~~~l~~a~~~~~~m~~E~~~~-----~~~~r~~~~~k~~~~~~~l~~l~~~~~~~ 92 (219)
..+...+..+...+.+++.-+..++.++... +...|..+..++...+.++..++.++...
T Consensus 65 ~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~ 129 (188)
T PF03962_consen 65 QKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKELEKY 129 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666667777777776666666655432 34568889999999999999999888643
No 134
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=54.27 E-value=1.3e+02 Score=25.21 Aligned_cols=20 Identities=15% Similarity=0.258 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 047357 198 GSIIVALVIAIIFILFYKLS 217 (219)
Q Consensus 198 ~~ii~~l~~~i~~vi~~k~~ 217 (219)
++++++|+.+=++.++.|++
T Consensus 266 ~~i~llfi~iel~Pv~~Kl~ 285 (301)
T PF14362_consen 266 LFIFLLFIAIELLPVLFKLL 285 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 45666666666777777765
No 135
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=54.24 E-value=96 Score=23.64 Aligned_cols=56 Identities=16% Similarity=0.382 Sum_probs=42.6
Q ss_pred HHHHHHHHchHHHHHHHHHHHHHHHhcC---ChhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 047357 36 KEKYSEIQSGLDDADALIRKMDLEARSL---QPNVKAMLLAKLREYKSDLNKLKREFKRVS 93 (219)
Q Consensus 36 ~~~~~~~~~~l~~a~~~~~~m~~E~~~~---~~~~r~~~~~k~~~~~~~l~~l~~~~~~~~ 93 (219)
...+..+...+.+++..++.++.|+..+ |++ ..+...+.+++.++..+...+..++
T Consensus 78 d~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~--~el~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 78 DAEIKELREELAELKKEVKSLEAELASLSSEPTN--EELREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3447778888888888888888888754 444 4688888888888888888886654
No 136
>PF08802 CytB6-F_Fe-S: Cytochrome B6-F complex Fe-S subunit ; InterPro: IPR014909 The cytochrome b6-f complex mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions. The cytochrome b6-f complex has 4 large subunits, these are: cytochrome b6, subunit IV (17 kDa polypeptide, PetD), cytochrome f and the Rieske protein, while the 4 small subunits are: PetG, PetL, PetM and PetN. The complex functions as a dimer. This protein corresponds to the alpha helical transmembrane domain of the cytochrome b6-f complex Rieske iron-sulphur subunit. ; GO: 0009496 plastoquinol-plastocyanin reductase activity, 0051537 2 iron, 2 sulfur cluster binding, 0055114 oxidation-reduction process, 0042651 thylakoid membrane; PDB: 1Q90_R 1VF5_D 2E75_D 2E74_D 2E76_D 2D2C_Q 2ZT9_D.
Probab=54.08 E-value=41 Score=19.33 Aligned_cols=25 Identities=28% Similarity=0.270 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 047357 184 SSMSRRMTRNKWIVGSIIVALVIAI 208 (219)
Q Consensus 184 ~~m~rr~~~dk~Il~~ii~~l~~~i 208 (219)
=.|.||..-|.+...++.+....++
T Consensus 4 Pdm~RR~lmN~ll~Gava~~a~~~l 28 (39)
T PF08802_consen 4 PDMSRRQLMNLLLGGAVAVPAGGML 28 (39)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHhhHHHHHHHHh
Confidence 3699999999977766555444333
No 137
>PF13800 Sigma_reg_N: Sigma factor regulator N-terminal
Probab=52.98 E-value=33 Score=23.57 Aligned_cols=29 Identities=17% Similarity=0.360 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047357 185 SMSRRMTRNKWIVGSIIVALVIAIIFILF 213 (219)
Q Consensus 185 ~m~rr~~~dk~Il~~ii~~l~~~i~~vi~ 213 (219)
.+.||....-.+-..+|.+++++++++++
T Consensus 3 ~i~kK~K~k~~l~~~~isi~~~lvi~~i~ 31 (96)
T PF13800_consen 3 KILKKAKRKSRLRTVVISIISALVIFIIS 31 (96)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 34444444444445555555555544433
No 138
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=52.68 E-value=16 Score=24.63 Aligned_cols=15 Identities=27% Similarity=0.578 Sum_probs=3.0
Q ss_pred HHHHHHHHHHHHHhh
Q 047357 202 VALVIAIIFILFYKL 216 (219)
Q Consensus 202 ~~l~~~i~~vi~~k~ 216 (219)
++++-.++++-|.|.
T Consensus 19 aIvvW~iv~ieYrk~ 33 (81)
T PF00558_consen 19 AIVVWTIVYIEYRKI 33 (81)
T ss_dssp HHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333344444443
No 139
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=52.14 E-value=1.3e+02 Score=24.58 Aligned_cols=59 Identities=8% Similarity=0.062 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHhh-------hhhcCCCChhHHHHHHHHHHchHHHHHHHHHHHHHHHhcCChhHH
Q 047357 10 RQYCELSTNLSRKC-------SSASLLPDGDQKKEKYSEIQSGLDDADALIRKMDLEARSLQPNVK 68 (219)
Q Consensus 10 ~e~~~~~~~i~~~l-------~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~m~~E~~~~~~~~r 68 (219)
.|+..++..|...+ ..+.+.+++.+|..+-..++..|+.++.+-+|+...+.+.....+
T Consensus 8 ~Eid~~lKkv~EG~~~F~~i~~K~~~~~n~~QKEK~E~DLKkEIKKLQR~RdQIK~W~~~~diKdk 73 (233)
T PF04065_consen 8 QEIDRTLKKVQEGVEEFDEIYEKVESATNQNQKEKLEADLKKEIKKLQRLRDQIKTWLSSNDIKDK 73 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHccCcccccH
Confidence 34444444444433 333443467899999999999999999999999999876554443
No 140
>KOG4433 consensus Tweety transmembrane/cell surface protein [General function prediction only]
Probab=52.14 E-value=1.2e+02 Score=27.53 Aligned_cols=41 Identities=15% Similarity=0.086 Sum_probs=23.8
Q ss_pred HHhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 047357 120 LAMSVERINQSGERIRESRRVMLETEELGISIVEDLNQQRE 160 (219)
Q Consensus 120 l~~~~~~l~~~~~~L~~s~~~~~ete~~g~~i~~~L~~Qre 160 (219)
+.+....+.+.+..+..+...+.++.+-..+++.++.++-+
T Consensus 115 ~~q~~~Sl~~an~tv~ti~~qv~~~~~~l~~~~~~~l~~~~ 155 (526)
T KOG4433|consen 115 LLQATYSLRHANHTVSTIDAQVSDTAEGLNNTAEQLLETLE 155 (526)
T ss_pred HHHHHHhhhhhcchhhHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 44444555555566666666666666665556665555333
No 141
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=52.06 E-value=75 Score=21.82 Aligned_cols=86 Identities=10% Similarity=0.111 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcCCC----ChhHHHHHHHHHHchHHHHHHHHHHHHHHHhcCC--hhHHHHHHHHHHHH
Q 047357 5 FEGYERQYCELSTNLSRKCSSASLLP----DGDQKKEKYSEIQSGLDDADALIRKMDLEARSLQ--PNVKAMLLAKLREY 78 (219)
Q Consensus 5 f~~ye~e~~~~~~~i~~~l~~~~~~~----~~~~~~~~~~~~~~~l~~a~~~~~~m~~E~~~~~--~~~r~~~~~k~~~~ 78 (219)
|-...+|....+..+...+.+....+ +..+...+-.++...++.++..++.|+.-+.-+. |..=.--...+.+.
T Consensus 3 F~~v~~ev~~sl~~l~~~~~~~~~~~~~~~~~~e~~~~~~eL~~~l~~ie~~L~DL~~aV~ive~np~kF~l~~~Ei~~R 82 (97)
T PF09177_consen 3 FFVVKDEVQSSLDRLESLYRRWQRLRSDTSSSEELKWLKRELRNALQSIEWDLEDLEEAVRIVEKNPSKFNLSEEEISRR 82 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHT-HHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCHHHHHHH
Confidence 55667778888888877777654321 1245566777888888888888888887665422 21001113445555
Q ss_pred HHHHHHHHHHHH
Q 047357 79 KSDLNKLKREFK 90 (219)
Q Consensus 79 ~~~l~~l~~~~~ 90 (219)
+.-+..++..+.
T Consensus 83 r~fv~~~~~~i~ 94 (97)
T PF09177_consen 83 RQFVSAIRNQIK 94 (97)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555544
No 142
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=52.05 E-value=45 Score=19.87 Aligned_cols=32 Identities=19% Similarity=0.436 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchhhHhhhccCC
Q 047357 70 MLLAKLREYKSDLNKLKREFKRVSSSDAHEELLESG 105 (219)
Q Consensus 70 ~~~~k~~~~~~~l~~l~~~~~~~~~~~~r~~L~~~~ 105 (219)
.+.+++......+..|+..|.+. .+.+||.++
T Consensus 3 aLrqQv~aL~~qv~~Lq~~fs~y----KKa~lFp~G 34 (46)
T PF09006_consen 3 ALRQQVEALQGQVQRLQAAFSQY----KKAELFPNG 34 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHTTTE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHCCCc
Confidence 45666777777777777777554 466899664
No 143
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=51.85 E-value=2.9e+02 Score=28.56 Aligned_cols=27 Identities=22% Similarity=0.335 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 047357 67 VKAMLLAKLREYKSDLNKLKREFKRVS 93 (219)
Q Consensus 67 ~r~~~~~k~~~~~~~l~~l~~~~~~~~ 93 (219)
.+..|..++..+..++..+...+..+.
T Consensus 882 ~r~~le~~L~el~~el~~l~~~~~~~~ 908 (1311)
T TIGR00606 882 RRQQFEEQLVELSTEVQSLIREIKDAK 908 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666665553
No 144
>smart00511 ORANGE Orange domain. This domain confers specificity among members of the Hairy/E(SPL) family.
Probab=51.61 E-value=47 Score=19.29 Aligned_cols=40 Identities=25% Similarity=0.301 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCCCChhHHHHHHHHHHchHH
Q 047357 7 GYERQYCELSTNLSRKCSSASLLPDGDQKKEKYSEIQSGLD 47 (219)
Q Consensus 7 ~ye~e~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 47 (219)
+|..-|..-..++.+.|...+.. +++.+..++..+...+.
T Consensus 2 ~y~~Gy~~C~~Ev~~fLs~~~~~-~~~~~~~Ll~HL~~~~~ 41 (45)
T smart00511 2 SFRSGYRECANEVSRFLSQLPGT-DPDVRARLLSHLQTHLN 41 (45)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHHHHH
Confidence 57788999999999999988775 55666666666555443
No 145
>PF06459 RR_TM4-6: Ryanodine Receptor TM 4-6; InterPro: IPR009460 The release of Ca2+ ions from intracellular stores is a key step in a wide variety of cellular functions. In striated muscle, the release of Ca2+ from the sarcoplasmic reticulum (SR) leads to muscle contraction. Ca2+ release occurs through large, high-conductance Ca2+ release channels, also known as ryanodine receptors (RyRs) because they bind the plant alkaloid ryanodine with high affinity and specificity []. This region covers TM regions 4-6 of the ryanodine receptor 1 family.; GO: 0005219 ryanodine-sensitive calcium-release channel activity, 0006874 cellular calcium ion homeostasis, 0016021 integral to membrane
Probab=51.29 E-value=41 Score=28.22 Aligned_cols=35 Identities=23% Similarity=0.405 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 047357 180 KKVLSSMSRRMTRNKWIVGSIIVALVIAIIFILFYKLS 217 (219)
Q Consensus 180 ~~~l~~m~rr~~~dk~Il~~ii~~l~~~i~~vi~~k~~ 217 (219)
.++|+.+.|.-+.=|++..++ .++|+++++|||+.
T Consensus 160 ~k~lnylARNFYNlr~lALfl---AFaINFILLFYKVs 194 (274)
T PF06459_consen 160 TKFLNYLARNFYNLRFLALFL---AFAINFILLFYKVS 194 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhc
Confidence 356777777777666554333 34558888899874
No 146
>PF15018 InaF-motif: TRP-interacting helix
Probab=50.57 E-value=33 Score=19.57 Aligned_cols=18 Identities=17% Similarity=0.451 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 047357 200 IIVALVIAIIFILFYKLS 217 (219)
Q Consensus 200 ii~~l~~~i~~vi~~k~~ 217 (219)
++.+.+.+|.+.+||-|+
T Consensus 14 l~~VSl~Ai~LsiYY~f~ 31 (38)
T PF15018_consen 14 LFSVSLAAIVLSIYYIFF 31 (38)
T ss_pred HHHHHHHHHHHHHHHhee
Confidence 445556777888888664
No 147
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=50.33 E-value=5.4 Score=25.55 Aligned_cols=9 Identities=22% Similarity=0.752 Sum_probs=0.5
Q ss_pred HHHHhhccC
Q 047357 211 ILFYKLSHH 219 (219)
Q Consensus 211 vi~~k~~~~ 219 (219)
.+.|++.||
T Consensus 31 f~iyR~rkk 39 (64)
T PF01034_consen 31 FLIYRMRKK 39 (64)
T ss_dssp ------S--
T ss_pred HHHHHHHhc
Confidence 334555443
No 148
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=50.29 E-value=2.4e+02 Score=27.15 Aligned_cols=28 Identities=18% Similarity=0.253 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchh
Q 047357 69 AMLLAKLREYKSDLNKLKREFKRVSSSD 96 (219)
Q Consensus 69 ~~~~~k~~~~~~~l~~l~~~~~~~~~~~ 96 (219)
..|.+.++.++..+..++..+..++...
T Consensus 635 r~~~~EL~~~~~~l~~l~~si~~lk~k~ 662 (717)
T PF10168_consen 635 REFKKELERMKDQLQDLKASIEQLKKKL 662 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688888888888888888887776543
No 149
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=49.96 E-value=2.6e+02 Score=27.31 Aligned_cols=75 Identities=9% Similarity=0.057 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047357 132 ERIRESRRVMLETEELGISIVEDLNQQRETLLNSRNKLHGVDDAISKSKKVLSSMSRRMTRNKWIVGSIIVALVIAI 208 (219)
Q Consensus 132 ~~L~~s~~~~~ete~~g~~i~~~L~~Qre~L~~~~~~~~~i~~~l~~s~~~l~~m~rr~~~dk~Il~~ii~~l~~~i 208 (219)
..+...++.++.....=......+..+ ......+-..++..........+.++..=.+.=-++++++++++++++
T Consensus 357 ~~v~~ik~~l~~~~~~i~~~a~~i~~~--~~~~~s~~~~~~~~~~~~~~~~~~~y~~yR~~~~lil~~~llLIv~~~ 431 (806)
T PF05478_consen 357 DVVPPIKRDLDSIGKQIRSQAKQIPNQ--IDSNISDILNNTERSSRSFEDEYEKYDSYRWIVGLILCCVLLLIVLCL 431 (806)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhHHH--HHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444333333333334333 223344445566666666677788887666665666655444433333
No 150
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.66 E-value=1.4e+02 Score=24.37 Aligned_cols=25 Identities=12% Similarity=0.238 Sum_probs=16.4
Q ss_pred HhhHHHHHhhhhhhhhhHhHHHHHH
Q 047357 157 QQRETLLNSRNKLHGVDDAISKSKK 181 (219)
Q Consensus 157 ~Qre~L~~~~~~~~~i~~~l~~s~~ 181 (219)
..-.-+.++..+++.....+...++
T Consensus 184 dl~~e~d~t~srl~~~~~~l~~v~~ 208 (235)
T KOG3202|consen 184 DLDNEMDRTESRLDRVMKRLAKVNR 208 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445667777777777666666666
No 151
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=49.31 E-value=84 Score=28.50 Aligned_cols=56 Identities=13% Similarity=0.130 Sum_probs=41.6
Q ss_pred HHHHHHHHchHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047357 36 KEKYSEIQSGLDDADALIRKMDLEARSLQPNVKAMLLAKLREYKSDLNKLKREFKRV 92 (219)
Q Consensus 36 ~~~~~~~~~~l~~a~~~~~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~~l~~~~~~~ 92 (219)
+..+.+.+....+++..+..++.|...+.. .+..+..++..+..++..|+.++..+
T Consensus 68 qSALteqQ~kasELEKqLaaLrqElq~~sa-q~~dle~KIkeLEaE~~~Lk~Ql~a~ 123 (475)
T PRK13729 68 QHATTEMQVTAAQMQKQYEEIRRELDVLNK-QRGDDQRRIEKLGQDNAALAEQVKAL 123 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 455777777788888888888777664433 34578889999999999998888543
No 152
>PF08196 UL2: UL2 protein; InterPro: IPR013269 This entry contains Orf UL2 of Human cytomegalovirus (HHV-5) (Human herpesvirus 5), which is a short protein of unknown function [].
Probab=49.21 E-value=31 Score=21.07 Aligned_cols=19 Identities=21% Similarity=0.322 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHhhcc
Q 047357 200 IIVALVIAIIFILFYKLSH 218 (219)
Q Consensus 200 ii~~l~~~i~~vi~~k~~~ 218 (219)
.|.+..+.|+.++|.|++|
T Consensus 38 gif~itlviwt~vwlkllr 56 (60)
T PF08196_consen 38 GIFLITLVIWTVVWLKLLR 56 (60)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444456678889999876
No 153
>PHA02902 putative IMV membrane protein; Provisional
Probab=49.16 E-value=36 Score=21.78 Aligned_cols=19 Identities=16% Similarity=0.356 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 047357 198 GSIIVALVIAIIFILFYKL 216 (219)
Q Consensus 198 ~~ii~~l~~~i~~vi~~k~ 216 (219)
+.|.+++++++++++|.-+
T Consensus 6 fvi~~v~v~Ivclliya~Y 24 (70)
T PHA02902 6 FVILAVIVIIFCLLIYAAY 24 (70)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666533
No 154
>PF07361 Cytochrom_B562: Cytochrome b562; InterPro: IPR009155 Cytochrome b562 is a haem-containing protein that is expressed in the periplasm of Escherichia coli. In b-type cytochromes, the haem atom is not covalently attached to the polypeptide. Cytochrome b562 has a four-helical bundle structure that is structurally similar to that found in members of the cytochrome c family (IPR002321 from INTERPRO). Cytochrome b562 has a reduction potential of 167 mV, which sets the energy yield possible in metabolism and is also a key determinant of the rate at which redox reactions proceed [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0042597 periplasmic space; PDB: 4ER9_A 3IQ6_G 2QLA_B 3FOO_A 3M79_C 256B_A 3NMI_F 3HNK_A 3NMK_D 2BC5_A ....
Probab=49.04 E-value=82 Score=22.08 Aligned_cols=43 Identities=23% Similarity=0.264 Sum_probs=17.7
Q ss_pred HHHHchHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHH
Q 047357 40 SEIQSGLDDADALIRKMDLEARSLQPNVKAMLLAKLREYKSDL 82 (219)
Q Consensus 40 ~~~~~~l~~a~~~~~~m~~E~~~~~~~~r~~~~~k~~~~~~~l 82 (219)
.....-++.+...++..+..+..-.-..-.....++...|.++
T Consensus 56 ~~Y~~Gl~~li~~id~a~~~~~~G~l~~AK~~l~~l~~lR~ey 98 (103)
T PF07361_consen 56 KDYQEGLDKLIDQIDKAEALAEAGKLDEAKAALKKLDDLRKEY 98 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 3444444444444455444444332222123344444444443
No 155
>PF10183 ESSS: ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) ; InterPro: IPR019329 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry represents the ESSS subunit from mitochondrial NADH:ubiquinone oxidoreductase (complex I). It carries mitochondrial import sequences [].
Probab=48.99 E-value=24 Score=24.98 Aligned_cols=21 Identities=14% Similarity=-0.154 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 047357 195 WIVGSIIVALVIAIIFILFYK 215 (219)
Q Consensus 195 ~Il~~ii~~l~~~i~~vi~~k 215 (219)
.++|+.+.+++++.+++++||
T Consensus 61 ~~~f~~~~~~~v~~~~~~~y~ 81 (105)
T PF10183_consen 61 LPFFFGFSGSLVFGGVFLAYK 81 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHcC
Confidence 456666666656666666654
No 156
>COG4396 Mu-like prophage host-nuclease inhibitor protein Gam [General function prediction only]
Probab=48.44 E-value=1.1e+02 Score=22.80 Aligned_cols=62 Identities=15% Similarity=0.318 Sum_probs=43.8
Q ss_pred chHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHhhhccCCC
Q 047357 44 SGLDDADALIRKMDLEARSLQPNVKAMLLAKLREYKSDLNKLKREFKRVSSSDAHEELLESGK 106 (219)
Q Consensus 44 ~~l~~a~~~~~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~~l~~~~~~~~~~~~r~~L~~~~~ 106 (219)
+.|..++.-...++.|.+.--...-..|--++..++.++..|.+........ +|++|-.++.
T Consensus 25 r~iGDlqRE~~RLeTemnDk~aai~e~Yapq~~~lk~EI~~L~k~vq~yCea-nrDELTe~GK 86 (170)
T COG4396 25 RQIGDLQREVKRLETEMNDKKAAIEEEYAPQAAPLKAEIMSLTKRVQAYCEA-NRDELTENGK 86 (170)
T ss_pred HHHHHHHHHHHHHHHHhcchHhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHh-CHHHHhcCCC
Confidence 3445555556667777766555566789999999999999988877654433 8999976653
No 157
>PF07527 Hairy_orange: Hairy Orange; InterPro: IPR003650 This domain confers specificity among members of the Hairy/E(SPL) family. HES-2 (hairy and enhancer of split 2) is a transcription factor, and the hairy protein is a pair-rule protein that regulates embryonic segmentation and adult bristle patterning. These proteins are transcriptional repressors of genes that require the BHLH protein for their transcription.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DB7_A.
Probab=47.96 E-value=53 Score=18.90 Aligned_cols=41 Identities=29% Similarity=0.321 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcCCCChhHHHHHHHHHHchHH
Q 047357 6 EGYERQYCELSTNLSRKCSSASLLPDGDQKKEKYSEIQSGLD 47 (219)
Q Consensus 6 ~~ye~e~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 47 (219)
++|..-|..-+.++.+.|...+.. +++-+..++..+...+.
T Consensus 1 ~~y~~Gy~~C~~Ev~~fL~~~~~~-~~~~~~rLl~HL~~~~~ 41 (43)
T PF07527_consen 1 QKYRAGYSECLNEVSRFLSSVEGV-DPGVRARLLSHLQSCLN 41 (43)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTS----THHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHHHhc
Confidence 468888999999999999888776 55655555555554443
No 158
>PF15168 TRIQK: Triple QxxK/R motif-containing protein family
Probab=47.95 E-value=46 Score=22.06 Aligned_cols=20 Identities=25% Similarity=0.433 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 047357 198 GSIIVALVIAIIFILFYKLS 217 (219)
Q Consensus 198 ~~ii~~l~~~i~~vi~~k~~ 217 (219)
.+.|++|++++....|+.|.
T Consensus 55 l~ail~lL~a~Ya~fyl~ls 74 (79)
T PF15168_consen 55 LAAILVLLLAFYAFFYLNLS 74 (79)
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 44455555666666666654
No 159
>PHA02849 putative transmembrane protein; Provisional
Probab=47.64 E-value=32 Score=22.90 Aligned_cols=13 Identities=23% Similarity=0.227 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q 047357 195 WIVGSIIVALVIA 207 (219)
Q Consensus 195 ~Il~~ii~~l~~~ 207 (219)
+|+.+++++++++
T Consensus 19 vi~v~v~vI~i~~ 31 (82)
T PHA02849 19 VILVFVLVISFLA 31 (82)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444333
No 160
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=47.39 E-value=1.3e+02 Score=23.44 Aligned_cols=46 Identities=17% Similarity=0.336 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHhcCChhHH--HHHHHHHHHHHHHHHHHHHHHHhh
Q 047357 47 DDADALIRKMDLEARSLQPNVK--AMLLAKLREYKSDLNKLKREFKRV 92 (219)
Q Consensus 47 ~~a~~~~~~m~~E~~~~~~~~r--~~~~~k~~~~~~~l~~l~~~~~~~ 92 (219)
.+.+.....|+.|+..+..... .....+.+..|.....+..++...
T Consensus 116 ~~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~eL~~F 163 (171)
T PF04799_consen 116 QQVDQTKNELEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLESELERF 163 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666554321 344455555555555555555443
No 161
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=47.29 E-value=1.1e+02 Score=22.36 Aligned_cols=29 Identities=17% Similarity=0.319 Sum_probs=21.5
Q ss_pred CChhHHHHHHHHHHchHHHHHHHHHHHHH
Q 047357 30 PDGDQKKEKYSEIQSGLDDADALIRKMDL 58 (219)
Q Consensus 30 ~~~~~~~~~~~~~~~~l~~a~~~~~~m~~ 58 (219)
++++++......++....++.+.+..++-
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (181)
T PF12729_consen 72 TDPEERQEIEKEIDEARAEIDEALEEYEK 100 (181)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677777777788888888777777664
No 162
>PRK10780 periplasmic chaperone; Provisional
Probab=47.01 E-value=1.3e+02 Score=22.93 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=12.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhh
Q 047357 4 VFEGYERQYCELSTNLSRKCSSA 26 (219)
Q Consensus 4 ~f~~ye~e~~~~~~~i~~~l~~~ 26 (219)
.|..+..++.....++......+
T Consensus 51 ~~~~~q~el~~~~~elq~~~~~~ 73 (165)
T PRK10780 51 EFKGRASELQRMETDLQAKMQKL 73 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555554
No 163
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=46.92 E-value=4.7 Score=32.58 Aligned_cols=14 Identities=14% Similarity=0.133 Sum_probs=9.2
Q ss_pred HHHHHHHHHhhccC
Q 047357 206 IAIIFILFYKLSHH 219 (219)
Q Consensus 206 ~~i~~vi~~k~~~~ 219 (219)
++.++..|+||.|+
T Consensus 172 ~gGGa~yYfK~~K~ 185 (218)
T PF14283_consen 172 IGGGAYYYFKFYKP 185 (218)
T ss_pred hhcceEEEEEEecc
Confidence 44466677888764
No 164
>PF13131 DUF3951: Protein of unknown function (DUF3951)
Probab=46.79 E-value=39 Score=20.56 Aligned_cols=15 Identities=20% Similarity=0.288 Sum_probs=7.0
Q ss_pred HHHHHHHHHHhhccC
Q 047357 205 VIAIIFILFYKLSHH 219 (219)
Q Consensus 205 ~~~i~~vi~~k~~~~ 219 (219)
+++|+|+-|.-|.+|
T Consensus 16 ~~lIgfity~mfV~K 30 (53)
T PF13131_consen 16 FFLIGFITYKMFVKK 30 (53)
T ss_pred HHHHHHHHHHhheec
Confidence 344455555544443
No 165
>PRK10884 SH3 domain-containing protein; Provisional
Probab=46.58 E-value=1.5e+02 Score=23.69 Aligned_cols=32 Identities=13% Similarity=-0.114 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047357 183 LSSMSRRMTRNKWIVGSIIVALVIAIIFILFY 214 (219)
Q Consensus 183 l~~m~rr~~~dk~Il~~ii~~l~~~i~~vi~~ 214 (219)
+..-....-.+...-|++.+..++++++++-+
T Consensus 158 l~~~~~~~~~~~~~~wf~~Gg~v~~~GlllGl 189 (206)
T PRK10884 158 ANLQLDDKQRTIIMQWFMYGGGVAGIGLLLGL 189 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHchHHHHHHHHHHH
Confidence 34444444455555567777766666666544
No 166
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=46.57 E-value=87 Score=20.95 Aligned_cols=25 Identities=16% Similarity=0.364 Sum_probs=13.7
Q ss_pred HHHHHchHHHHHHHHHHHHHHHhcC
Q 047357 39 YSEIQSGLDDADALIRKMDLEARSL 63 (219)
Q Consensus 39 ~~~~~~~l~~a~~~~~~m~~E~~~~ 63 (219)
+..++.++++|-+.|.-+..|+..+
T Consensus 6 leqLE~KIqqAvdtI~LLqmEieEL 30 (79)
T PRK15422 6 FEKLEAKVQQAIDTITLLQMEIEEL 30 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555444
No 167
>PTZ00046 rifin; Provisional
Probab=46.16 E-value=22 Score=30.94 Aligned_cols=8 Identities=13% Similarity=0.364 Sum_probs=3.7
Q ss_pred HHHhhccC
Q 047357 212 LFYKLSHH 219 (219)
Q Consensus 212 i~~k~~~~ 219 (219)
+++++.||
T Consensus 336 LILRYRRK 343 (358)
T PTZ00046 336 LILRYRRK 343 (358)
T ss_pred HHHHhhhc
Confidence 33455554
No 168
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=45.70 E-value=1.6e+02 Score=23.82 Aligned_cols=53 Identities=13% Similarity=0.221 Sum_probs=30.5
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhHhH
Q 047357 124 VERINQSGERIRESRRVMLETEELGISIVEDLNQQRETLLNSRNKLHGVDDAI 176 (219)
Q Consensus 124 ~~~l~~~~~~L~~s~~~~~ete~~g~~i~~~L~~Qre~L~~~~~~~~~i~~~l 176 (219)
...+.....+.+.+.+.+...+..-..+-..|...++....+...++.+-..|
T Consensus 182 ~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~~l~el 234 (237)
T PF00261_consen 182 EEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQTLNEL 234 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444445555555555555555555566666666666666666666555443
No 169
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=45.65 E-value=79 Score=20.18 Aligned_cols=61 Identities=16% Similarity=0.347 Sum_probs=35.2
Q ss_pred ChhHHHHHHHHHHchHHHHHHHHHHHHHHHhcCCh----hHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047357 31 DGDQKKEKYSEIQSGLDDADALIRKMDLEARSLQP----NVKAMLLAKLREYKSDLNKLKREFKR 91 (219)
Q Consensus 31 ~~~~~~~~~~~~~~~l~~a~~~~~~m~~E~~~~~~----~~r~~~~~k~~~~~~~l~~l~~~~~~ 91 (219)
+++.-......+.....++++.+.+|...+..++. .....+.....++...+..+...+..
T Consensus 5 d~~~l~~~a~~~~~~~~~l~~~~~~l~~~~~~l~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~ 69 (86)
T PF06013_consen 5 DPEQLRAAAQQLQAQADELQSQLQQLESSIDSLQASWQGEAADAFQDKFEEWNQAFRQLNEALEE 69 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGBTSSTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666667777777777777777776666532 22344555555555555555444443
No 170
>PRK11820 hypothetical protein; Provisional
Probab=45.54 E-value=1.9e+02 Score=24.47 Aligned_cols=24 Identities=25% Similarity=0.248 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHh
Q 047357 142 LETEELGISIVEDLNQQRETLLNS 165 (219)
Q Consensus 142 ~ete~~g~~i~~~L~~Qre~L~~~ 165 (219)
.++-+.+.++-..|..=|||++++
T Consensus 264 ~~is~~vVe~K~elEkiREQVQNI 287 (288)
T PRK11820 264 AEITNLVVELKVLIEQMREQVQNI 287 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 345556677777777777777764
No 171
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=45.46 E-value=51 Score=21.52 Aligned_cols=9 Identities=22% Similarity=0.187 Sum_probs=3.2
Q ss_pred HHHchHHHH
Q 047357 41 EIQSGLDDA 49 (219)
Q Consensus 41 ~~~~~l~~a 49 (219)
+++..|++.
T Consensus 36 ea~~~l~qM 44 (79)
T PF05008_consen 36 EAEELLKQM 44 (79)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 172
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=45.40 E-value=52 Score=23.28 Aligned_cols=14 Identities=29% Similarity=0.292 Sum_probs=6.0
Q ss_pred HhcCChhHHHHHHH
Q 047357 60 ARSLQPNVKAMLLA 73 (219)
Q Consensus 60 ~~~~~~~~r~~~~~ 73 (219)
+.++||.+.+++..
T Consensus 87 le~l~~eE~~~L~~ 100 (104)
T PF11460_consen 87 LEELSPEELEALQA 100 (104)
T ss_pred HHhCCHHHHHHHHH
Confidence 33444444444443
No 173
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=45.37 E-value=79 Score=20.09 Aligned_cols=53 Identities=17% Similarity=0.317 Sum_probs=32.9
Q ss_pred HHHHchHHHHHHHHHHHHHHHh------cCChhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047357 40 SEIQSGLDDADALIRKMDLEAR------SLQPNVKAMLLAKLREYKSDLNKLKREFKRV 92 (219)
Q Consensus 40 ~~~~~~l~~a~~~~~~m~~E~~------~~~~~~r~~~~~k~~~~~~~l~~l~~~~~~~ 92 (219)
..++..+..++..+..++.=+. ..|+........++..+...+..+...+..+
T Consensus 7 ~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~~L 65 (66)
T PF10458_consen 7 ERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEALEQL 65 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4444445555555554443332 4577777788888888888888888777544
No 174
>PHA03049 IMV membrane protein; Provisional
Probab=45.25 E-value=35 Score=21.94 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 047357 195 WIVGSIIVALVIAIIFILFYKL 216 (219)
Q Consensus 195 ~Il~~ii~~l~~~i~~vi~~k~ 216 (219)
+++.+|.++++++|++-+|-|-
T Consensus 5 ~~l~iICVaIi~lIvYgiYnkk 26 (68)
T PHA03049 5 IILVIICVVIIGLIVYGIYNKK 26 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 4555555555666777777653
No 175
>PRK14585 pgaD putative PGA biosynthesis protein; Provisional
Probab=45.09 E-value=41 Score=25.02 Aligned_cols=25 Identities=12% Similarity=0.230 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047357 191 TRNKWIVGSIIVALVIAIIFILFYKL 216 (219)
Q Consensus 191 ~~dk~Il~~ii~~l~~~i~~vi~~k~ 216 (219)
..+++.+|+.|+++ -++++|+|.|+
T Consensus 50 ~l~tl~~Y~~iAv~-nAvvLI~WA~Y 74 (137)
T PRK14585 50 ARSRLQFYFLLAVA-NAVVLIVWALY 74 (137)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 67889999988886 55566788664
No 176
>PHA02562 46 endonuclease subunit; Provisional
Probab=45.02 E-value=2.4e+02 Score=25.69 Aligned_cols=22 Identities=18% Similarity=0.268 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 047357 71 LLAKLREYKSDLNKLKREFKRV 92 (219)
Q Consensus 71 ~~~k~~~~~~~l~~l~~~~~~~ 92 (219)
|...+......+..++.++..+
T Consensus 253 ~~~~L~~l~~~~~~~~~~l~~~ 274 (562)
T PHA02562 253 PSAALNKLNTAAAKIKSKIEQF 274 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444433
No 177
>PF08855 DUF1825: Domain of unknown function (DUF1825); InterPro: IPR014954 These roteins are uncharacterised and are principally found in cyanobacteria.
Probab=44.77 E-value=1.1e+02 Score=21.76 Aligned_cols=54 Identities=15% Similarity=0.197 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcCCCChhHHHHHHHHHHchHHHHHHHHHHHHHH
Q 047357 5 FEGYERQYCELSTNLSRKCSSASLLPDGDQKKEKYSEIQSGLDDADALIRKMDLE 59 (219)
Q Consensus 5 f~~ye~e~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~m~~E 59 (219)
..+--+++-...+++...-+.++.. +.+.+...+..++..++.-+.-...+++-
T Consensus 10 Vq~e~~~if~~yq~l~~~~~~~~~f-d~egK~~~Id~m~~LidkqkiF~~Rl~LS 63 (108)
T PF08855_consen 10 VQDELQDIFEDYQELMQMGSKYGKF-DREGKKIHIDKMEELIDKQKIFYKRLELS 63 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccC-CHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3333444445555666666677777 88999999999999999998888877763
No 178
>PF12998 ING: Inhibitor of growth proteins N-terminal histone-binding; InterPro: IPR024610 Histones undergo numerous post-translational modifications, including acetylation and methylation, at residues which are then probable docking sites for various chromatin remodelling complexes. Inhibitor of growth proteins (INGs) specifically bind to residues that have been thus modified. INGs carry a well-characterised C-terminal PHD-type zinc-finger domain, binding with lysine 4-tri-methylated histone H3 (H3K4me3), as well as this N-terminal domain that binds unmodified H3 tails. Although these two regions can bind histones independently, together they increase the apparent association of the ING for the H3 tail. This entry represents the N-terminal histone binding domain found in inhibitor proteins.; PDB: 4AFL_A.
Probab=44.53 E-value=78 Score=21.70 Aligned_cols=36 Identities=31% Similarity=0.386 Sum_probs=15.0
Q ss_pred HHchHHHHHHHHHHHHHHHhc--CChhHHHHHHHHHHH
Q 047357 42 IQSGLDDADALIRKMDLEARS--LQPNVKAMLLAKLRE 77 (219)
Q Consensus 42 ~~~~l~~a~~~~~~m~~E~~~--~~~~~r~~~~~k~~~ 77 (219)
+...+.++...+..+-..... ++++.+..+..++..
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ 68 (105)
T PF12998_consen 31 SQDLLEELDQQIQKFIKNHGSPSLSPEKRRELLKEIQE 68 (105)
T ss_dssp HHHHHHHHHHHHHHHHTCTTS--S-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcccccCChHHHHHHHHHHHH
Confidence 334444444444444333333 444444444444444
No 179
>PF11298 DUF3099: Protein of unknown function (DUF3099); InterPro: IPR021449 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=44.40 E-value=91 Score=20.55 Aligned_cols=30 Identities=23% Similarity=0.308 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047357 182 VLSSMSRRMTRNKWIVGSIIVALVIAIIFI 211 (219)
Q Consensus 182 ~l~~m~rr~~~dk~Il~~ii~~l~~~i~~v 211 (219)
.-..+.+|..+--+.+.+-+.+++++.+++
T Consensus 9 ~~~d~~~R~r~Y~i~M~~Ri~~fvlA~~~~ 38 (73)
T PF11298_consen 9 LSQDQRRRRRRYLIMMGIRIPCFVLAAVVY 38 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677788888888877666666665555
No 180
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=44.39 E-value=1.5e+02 Score=23.06 Aligned_cols=73 Identities=14% Similarity=0.264 Sum_probs=41.3
Q ss_pred HHhhhhhcCCCChhHHHHHHHHHHchHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047357 20 SRKCSSASLLPDGDQKKEKYSEIQSGLDDADALIRKMDLEARSLQPNVKAMLLAKLREYKSDLNKLKREFKRV 92 (219)
Q Consensus 20 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~~l~~~~~~~ 92 (219)
+.-|..+.+.-..++-+..+++++.......+-+..+..=.+.+.|.++.....-...|-..+...++-|+..
T Consensus 106 eaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~g~~~vtpedk~~v~~~y~~~~~~wrk~krmf~ei 178 (201)
T KOG4603|consen 106 EAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKAGTNHVTPEDKEQVYREYQKYCKEWRKRKRMFREI 178 (201)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444432144666666667777766666667766666666667665544444444444555555555544
No 181
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=44.04 E-value=1.3e+02 Score=27.99 Aligned_cols=24 Identities=8% Similarity=0.087 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcC
Q 047357 5 FEGYERQYCELSTNLSRKCSSASL 28 (219)
Q Consensus 5 f~~ye~e~~~~~~~i~~~l~~~~~ 28 (219)
.+..+..++...+........+|+
T Consensus 166 ~~~~~~~~k~~~~~w~~~~~~Lp~ 189 (555)
T TIGR03545 166 AEEIEKSLKAMQQKWKKRKKDLPN 189 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC
Confidence 344455555555555555555553
No 182
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=43.74 E-value=25 Score=30.49 Aligned_cols=25 Identities=32% Similarity=0.610 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc
Q 047357 194 KWIVGSIIVALVIAIIFILFYKLSH 218 (219)
Q Consensus 194 k~Il~~ii~~l~~~i~~vi~~k~~~ 218 (219)
.-|.+.+|++++++++.||+|=++|
T Consensus 310 t~IiaSiIAIvvIVLIMvIIYLILR 334 (353)
T TIGR01477 310 TPIIASIIAILIIVLIMVIIYLILR 334 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777777777788887765
No 183
>PRK05529 cell division protein FtsQ; Provisional
Probab=43.66 E-value=23 Score=29.24 Aligned_cols=23 Identities=13% Similarity=0.312 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 047357 183 LSSMSRRMTRNKWIVGSIIVALV 205 (219)
Q Consensus 183 l~~m~rr~~~dk~Il~~ii~~l~ 205 (219)
++++.||..+.++++.+++++++
T Consensus 24 ~~~~~~~~~~r~~~~~~~~~~~~ 46 (255)
T PRK05529 24 VRRFTTRIRRRFILLACAVGAVL 46 (255)
T ss_pred hhchhhhccchhhhHHHHHHHHH
Confidence 77888888887777765554433
No 184
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=43.20 E-value=1.8e+02 Score=26.57 Aligned_cols=15 Identities=20% Similarity=0.330 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHh
Q 047357 77 EYKSDLNKLKREFKR 91 (219)
Q Consensus 77 ~~~~~l~~l~~~~~~ 91 (219)
+.+.+++.++.....
T Consensus 88 ~ae~d~~~~E~~i~~ 102 (604)
T KOG3564|consen 88 RAEADCEKLETQIQL 102 (604)
T ss_pred HHhhhHHHHHHHHHH
Confidence 333444444444433
No 185
>PF02419 PsbL: PsbL protein; InterPro: IPR003372 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbL found in PSII. PsbL is located in a gene cluster with PsbE, PsbF and PsbJ (PsbEFJL). Both PsbL and PsbJ (IPR002682 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbL prevent the formation of both PSII core dimers and PSII-light harvesting complex []. In addition, both PsbL and PsbJ are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_L 3A0B_l 3ARC_l 1S5L_l 2AXT_l 3BZ2_L 4FBY_L 3PRQ_L 3PRR_L 3KZI_L ....
Probab=43.12 E-value=53 Score=18.44 Aligned_cols=17 Identities=18% Similarity=0.643 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 047357 198 GSIIVALVIAIIFILFY 214 (219)
Q Consensus 198 ~~ii~~l~~~i~~vi~~ 214 (219)
+++++++++++.|--|+
T Consensus 19 ~GLllifvl~vLFssyf 35 (37)
T PF02419_consen 19 WGLLLIFVLAVLFSSYF 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhh
Confidence 45666666666655443
No 186
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=42.95 E-value=34 Score=24.99 Aligned_cols=7 Identities=14% Similarity=0.192 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 047357 208 IIFILFY 214 (219)
Q Consensus 208 i~~vi~~ 214 (219)
|+|++..
T Consensus 84 i~y~irR 90 (122)
T PF01102_consen 84 ISYCIRR 90 (122)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3334443
No 187
>COG4640 Predicted membrane protein [Function unknown]
Probab=42.85 E-value=29 Score=30.53 Aligned_cols=25 Identities=28% Similarity=0.315 Sum_probs=12.7
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHhh
Q 047357 192 RNKWIVGS-IIVALVIAIIFILFYKL 216 (219)
Q Consensus 192 ~dk~Il~~-ii~~l~~~i~~vi~~k~ 216 (219)
+.++|.|+ ++++|+++|+++.+.|.
T Consensus 49 kK~ii~was~a~~lIlii~~~~fgk~ 74 (465)
T COG4640 49 KKKIIPWASGAFILILIIILFFFGKN 74 (465)
T ss_pred cceeehhHHHHHHHHHHHHHHHHhhc
Confidence 34566665 44445555554444443
No 188
>PF08113 CoxIIa: Cytochrome c oxidase subunit IIa family; InterPro: IPR012538 This family consists of the cytochrome c oxidase subunit IIa family. The bax-type cytochrome c oxidase from Thermus thermophilus is known as a two subunit enzyme. From its crystal structure, it was discovered that an additional transmembrane helix, subunit IIa, spans the membrane. This subunit consists of 34 residues forming one helix across the membrane. The presence of this subunit seems to be important for the function of cytochrome c oxidases [].; PDB: 2QPD_C 3QJR_C 3EH5_C 3BVD_C 3S39_C 3QJU_C 3QJS_C 4EV3_C 3QJT_C 4FA7_C ....
Probab=42.72 E-value=59 Score=17.91 Aligned_cols=15 Identities=27% Similarity=0.567 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHH
Q 047357 200 IIVALVIAIIFILFY 214 (219)
Q Consensus 200 ii~~l~~~i~~vi~~ 214 (219)
+..+.+++.+|-+|+
T Consensus 14 iLt~~ILvFWfgvf~ 28 (34)
T PF08113_consen 14 ILTAFILVFWFGVFA 28 (34)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333334444443
No 189
>PF01848 HOK_GEF: Hok/gef family; InterPro: IPR000021 The hok/gef family of Gram-negative bacterial proteins are toxic to cells when over-expressed, killing the cells from within by interfering with a vital function in the cell membrane []. Some family members (flm) increase the stability of unstable RNA [], some (pnd) induce the degradation of stable RNA at higher than optimum growth temperatures [], while others affect the release of cellular magnesium by membrane alterations []. The proteins are short (50-70 residues), consisting of an N-terminal hydrophobic (possibly membrane spanning) domain, and a C-terminal periplasmic region, which contains the toxic domain. The C-terminal region contains a conserved cysteine residue that mediates homo-dimerisation in the gef protein, although dimerisation is not necessary for the toxic effect [].; GO: 0016020 membrane
Probab=42.55 E-value=16 Score=21.47 Aligned_cols=17 Identities=24% Similarity=0.387 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 047357 196 IVGSIIVALVIAIIFIL 212 (219)
Q Consensus 196 Il~~ii~~l~~~i~~vi 212 (219)
.+++++++|+.+++|..
T Consensus 3 ~l~~liviCiTvl~~~~ 19 (43)
T PF01848_consen 3 ALLCLIVICITVLIFTW 19 (43)
T ss_pred eehhHHHHHHHHHHHHH
Confidence 34566777766666553
No 190
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=42.04 E-value=99 Score=20.32 Aligned_cols=25 Identities=20% Similarity=0.341 Sum_probs=16.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 047357 65 PNVKAMLLAKLREYKSDLNKLKREF 89 (219)
Q Consensus 65 ~~~r~~~~~k~~~~~~~l~~l~~~~ 89 (219)
+..|..+..|+.+|-...+.+...+
T Consensus 46 ~~~k~~ir~K~~eYl~RAE~i~~~~ 70 (75)
T cd02677 46 PERREAVKRKIAEYLKRAEEILRLH 70 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556677777777777777666544
No 191
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=42.03 E-value=2.6e+02 Score=25.06 Aligned_cols=26 Identities=19% Similarity=0.510 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Q 047357 193 NKWIVGSIIVALVIAIIFILFYKLSH 218 (219)
Q Consensus 193 dk~Il~~ii~~l~~~i~~vi~~k~~~ 218 (219)
-||..+++++++.++++++..+.+.|
T Consensus 207 ~Rw~~~l~lL~~~lviC~~~l~gl~r 232 (418)
T cd07912 207 YRWLAYLGLLSLLLVICLVLLVGLAR 232 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555544443
No 192
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=42.00 E-value=1.2e+02 Score=21.32 Aligned_cols=25 Identities=8% Similarity=0.246 Sum_probs=12.6
Q ss_pred HHHHHchHHHHHHHHHHHHHHHhcC
Q 047357 39 YSEIQSGLDDADALIRKMDLEARSL 63 (219)
Q Consensus 39 ~~~~~~~l~~a~~~~~~m~~E~~~~ 63 (219)
+..++..+.+.+..++.|+..++.+
T Consensus 67 v~~L~l~l~el~G~~~~l~~~l~~v 91 (106)
T PF10805_consen 67 VHDLQLELAELRGELKELSARLQGV 91 (106)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3445555555555555555544444
No 193
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=41.86 E-value=3.8e+02 Score=26.99 Aligned_cols=57 Identities=9% Similarity=0.134 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhHhHHHHHHHHHHHHHHH
Q 047357 134 IRESRRVMLETEELGISIVEDLNQQRETLLNSRNKLHGVDDAISKSKKVLSSMSRRM 190 (219)
Q Consensus 134 L~~s~~~~~ete~~g~~i~~~L~~Qre~L~~~~~~~~~i~~~l~~s~~~l~~m~rr~ 190 (219)
+....+...+.+..-...-.++..++-.+..+...+......+..-..-++.+..++
T Consensus 831 ~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i 887 (1174)
T KOG0933|consen 831 ISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEI 887 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHH
Confidence 333344444444444445555555666666666666555555555555555444443
No 194
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=41.66 E-value=1.1e+02 Score=20.80 Aligned_cols=20 Identities=20% Similarity=0.291 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 047357 70 MLLAKLREYKSDLNKLKREF 89 (219)
Q Consensus 70 ~~~~k~~~~~~~l~~l~~~~ 89 (219)
....++.+|+.+++.+...+
T Consensus 9 ~lEekl~~cr~~le~ve~rL 28 (85)
T PF15188_consen 9 GLEEKLAQCRRRLEAVESRL 28 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666665555
No 195
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=41.33 E-value=1.5e+02 Score=22.05 Aligned_cols=55 Identities=7% Similarity=0.162 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhcCC---CChhHHHHHHHHHHchHHHHHHHHHHHHH
Q 047357 4 VFEGYERQYCELSTNLSRKCSSASLL---PDGDQKKEKYSEIQSGLDDADALIRKMDL 58 (219)
Q Consensus 4 ~f~~ye~e~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~~~~~l~~a~~~~~~m~~ 58 (219)
.+..+..++.....++......+... .+.+++.....++.....++......+..
T Consensus 44 ~~~~~~~~l~~~~~el~~~~~~l~~~~~~ls~~~~~~~~~~l~~~~~~l~~~~~~~~~ 101 (158)
T PF03938_consen 44 KFKALQKELQAKQKELQKLQQKLQSQKATLSEEERQKRQQELQQKEQELQQFQQQAQQ 101 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTS----SSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666666655555442 13444545455555554444444444443
No 196
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=41.30 E-value=5.1e+02 Score=28.26 Aligned_cols=66 Identities=11% Similarity=0.223 Sum_probs=52.6
Q ss_pred HHHHHhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhHhHHHHHHH
Q 047357 117 RERLAMSVERINQSGERIRESRRVMLETEELGISIVEDLNQQRETLLNSRNKLHGVDDAISKSKKV 182 (219)
Q Consensus 117 r~~l~~~~~~l~~~~~~L~~s~~~~~ete~~g~~i~~~L~~Qre~L~~~~~~~~~i~~~l~~s~~~ 182 (219)
+......++..++.+..+..-.+.+.++++.+...+...+.-..-+..+.++++...+.+..-+..
T Consensus 1849 ~k~~~~~q~~~dkl~~k~~~~krQleeaE~~~~~~~~k~R~~q~ele~a~erad~~e~~~~~lr~k 1914 (1930)
T KOG0161|consen 1849 KKNIERLQDLVDKLQAKIKQYKRQLEEAEEEANQNLSKYRKLQRELEEAEERADTAESELNKLRSK 1914 (1930)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666778888899999999999999999999999888888888888888777776654433
No 197
>PRK01844 hypothetical protein; Provisional
Probab=40.98 E-value=37 Score=22.29 Aligned_cols=15 Identities=7% Similarity=0.078 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHhhc
Q 047357 203 ALVIAIIFILFYKLS 217 (219)
Q Consensus 203 ~l~~~i~~vi~~k~~ 217 (219)
++.+++++++-+-+.
T Consensus 11 I~~li~G~~~Gff~a 25 (72)
T PRK01844 11 VVALVAGVALGFFIA 25 (72)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444555544343
No 198
>PRK10404 hypothetical protein; Provisional
Probab=40.90 E-value=1.3e+02 Score=21.17 Aligned_cols=34 Identities=12% Similarity=0.195 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047357 179 SKKVLSSMSRRMTRNKWIVGSIIVALVIAIIFIL 212 (219)
Q Consensus 179 s~~~l~~m~rr~~~dk~Il~~ii~~l~~~i~~vi 212 (219)
++........=+..|-|=-.+|.+.+.+++++++
T Consensus 65 ~k~aa~~td~yV~e~Pw~avGiaagvGlllG~Ll 98 (101)
T PRK10404 65 AKQAVYRADDYVHEKPWQGIGVGAAVGLVLGLLL 98 (101)
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence 3444444444444566665555555555555543
No 199
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=40.78 E-value=30 Score=25.48 Aligned_cols=11 Identities=9% Similarity=0.513 Sum_probs=6.6
Q ss_pred HHHHHHhhccC
Q 047357 209 IFILFYKLSHH 219 (219)
Q Consensus 209 ~~vi~~k~~~~ 219 (219)
+++++++|.||
T Consensus 118 ~~~~~yr~~r~ 128 (139)
T PHA03099 118 CLLSVYRFTRR 128 (139)
T ss_pred HHHhhheeeec
Confidence 34456677765
No 200
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=40.72 E-value=1.6e+02 Score=22.40 Aligned_cols=143 Identities=12% Similarity=0.177 Sum_probs=74.6
Q ss_pred HHHHHHHHHHhhhhhcCCCChhHHHHHHHH-HHchHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 047357 12 YCELSTNLSRKCSSASLLPDGDQKKEKYSE-IQSGLDDADALIRKMDLEARSLQPNVKAMLLAKLREYKSDLNKLKREFK 90 (219)
Q Consensus 12 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~-~~~~l~~a~~~~~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~~l~~~~~ 90 (219)
+......+...+..+-+.+++++-..++.. .+.....+......|+-++....|. ...-+...+..+.+...+|+
T Consensus 5 ~~e~~~~~~~~~~~~~~~~~~~Ev~~aik~~sd~~~~~l~~~~~~l~eeik~~n~~----~~e~l~~~~~kl~et~~~L~ 80 (155)
T PF07464_consen 5 AQEFQKEFQEQVNKLLGSQNQQEVVKAIKEQSDSVAQQLQNVSSSLQEEIKDANPE----AEEALKQLKTKLEETAEKLR 80 (155)
T ss_dssp HHHHHHHHHHHHHHHTSS--SS-SSHHHHHHHHHHHHHHHHHHHHHHHHHTT-SST----HHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHhCCCcHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcChh----HHHHHHHHHHHHHHHHHHHH
Confidence 334444445555554443455555555544 6667777888888899998886554 23333444445555444444
Q ss_pred hhcchhhHhhhccCCCCCCCCCCHHHHHHHHhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhh
Q 047357 91 RVSSSDAHEELLESGKADPNVVSGEQRERLAMSVERINQSGERIRESRRVMLETEELGISIVEDLNQQRETLLNSRNKLH 170 (219)
Q Consensus 91 ~~~~~~~r~~L~~~~~~~~~~~~~~~r~~l~~~~~~l~~~~~~L~~s~~~~~ete~~g~~i~~~L~~Qre~L~~~~~~~~ 170 (219)
+..+..+. +.-.-.+.+.. ....++.|++..|.++-.+.....+.|...-..+.
T Consensus 81 k~~Pev~~--------------------qa~~l~e~lQ~------~vq~l~~E~qk~~k~v~~~~~~~~e~l~~~~K~~~ 134 (155)
T PF07464_consen 81 KANPEVEK--------------------QANELQEKLQS------AVQSLVQESQKLAKEVSENSEGANEKLQPAIKQAY 134 (155)
T ss_dssp G-SHHHHH--------------------T-SSSHHHHHH------HHHHHHHHHHHHHHHHHS---SS-GGGHHHHHHHH
T ss_pred hcChHHHH--------------------HHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 32221100 00011111222 24567888889999999999999999888877665
Q ss_pred hhhHhHHHHHHHHHHH
Q 047357 171 GVDDAISKSKKVLSSM 186 (219)
Q Consensus 171 ~i~~~l~~s~~~l~~m 186 (219)
+. .+..+..+-+.+
T Consensus 135 D~--~~k~~~~~~~~l 148 (155)
T PF07464_consen 135 DD--AVKAAQKVQKQL 148 (155)
T ss_dssp HH--HHHHHHHHHHHH
T ss_pred HH--HHHHHHHHHHHH
Confidence 43 444555544443
No 201
>PF03233 Cauli_AT: Aphid transmission protein; InterPro: IPR004917 This protein is found in various caulimoviruses. It codes for an 18 kDa protein (PII), which is dispensable for infection but which is required for aphid transmission of the virus []. This protein interacts with the PIII protein []. ; GO: 0019089 transmission of virus
Probab=40.43 E-value=1.7e+02 Score=22.51 Aligned_cols=46 Identities=20% Similarity=0.548 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHhcCChhH--HHHHHHHHHHHHHHHHHHHHHHHh
Q 047357 46 LDDADALIRKMDLEARSLQPNV--KAMLLAKLREYKSDLNKLKREFKR 91 (219)
Q Consensus 46 l~~a~~~~~~m~~E~~~~~~~~--r~~~~~k~~~~~~~l~~l~~~~~~ 91 (219)
|.++.+-+..++.+...++... .......+..+..++..++..++.
T Consensus 113 L~e~snki~kLe~~~k~L~d~Iv~~~~i~e~IKd~de~L~~I~d~iK~ 160 (163)
T PF03233_consen 113 LEEISNKIRKLETEVKKLKDNIVTEKLIEELIKDFDERLKEIRDKIKK 160 (163)
T ss_pred HHHHHHHHHHHHHHHHhHhhhccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444445555555555554321 245677777777788877777654
No 202
>PF01627 Hpt: Hpt domain; InterPro: IPR008207 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents a domain present at the N terminus in proteins which undergo autophosphorylation. The group includes, the gliding motility regulatory protein from Myxococcus xanthus and a number of bacterial chemotaxis proteins.; GO: 0004871 signal transducer activity, 0000160 two-component signal transduction system (phosphorelay); PDB: 3KYJ_A 3KYI_A 3IQT_A 1Y6D_A 2LD6_A 1TQG_A 2R25_A 1OXB_A 1QSP_B 1C03_B ....
Probab=40.38 E-value=1e+02 Score=19.90 Aligned_cols=62 Identities=10% Similarity=0.085 Sum_probs=42.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhcCCCChhHHHHHHHHHHchHH-----HHHHHHHHHHHHHhcCCh
Q 047357 3 EVFEGYERQYCELSTNLSRKCSSASLLPDGDQKKEKYSEIQSGLD-----DADALIRKMDLEARSLQP 65 (219)
Q Consensus 3 ~~f~~ye~e~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~-----~a~~~~~~m~~E~~~~~~ 65 (219)
++++.|.++....+..+...+..+... +.+.-...+..++.... .+.....+++..++..+.
T Consensus 1 ell~~f~~~~~~~~~~l~~~~~~~~~~-d~~~l~~~~H~lkG~a~~~g~~~l~~~~~~lE~~~~~~~~ 67 (90)
T PF01627_consen 1 ELLDIFLEEAPEDLEQLEQALQALEQE-DWEELRRLAHRLKGSAGNLGAPRLAELAEQLEQALKSGDK 67 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSSHHC-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhHh-hHHHHHHHHHHHhhhHHhcCHHHHHHHHHHHHHHHHcCCc
Confidence 578889999999999999988554332 44555555666555443 466777777777776554
No 203
>PF15202 Adipogenin: Adipogenin
Probab=40.37 E-value=51 Score=21.37 Aligned_cols=22 Identities=5% Similarity=0.212 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc
Q 047357 196 IVGSIIVALVIAIIFILFYKLS 217 (219)
Q Consensus 196 Il~~ii~~l~~~i~~vi~~k~~ 217 (219)
++++..-+-++.+.+|+|++|+
T Consensus 18 vfwlclpv~lllfl~ivwlrfl 39 (81)
T PF15202_consen 18 VFWLCLPVGLLLFLLIVWLRFL 39 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444443334445556777764
No 204
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=40.26 E-value=2.7e+02 Score=24.75 Aligned_cols=27 Identities=15% Similarity=0.294 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 047357 192 RNKWIVGSIIVALVIAIIFILFYKLSH 218 (219)
Q Consensus 192 ~dk~Il~~ii~~l~~~i~~vi~~k~~~ 218 (219)
.-||+.+++++++.++++++..+-+.|
T Consensus 183 ~yRw~~~~~lL~l~l~icl~~l~glar 209 (406)
T PF04906_consen 183 YYRWLAYLGLLILDLVICLLGLLGLAR 209 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345777766666666666665554444
No 205
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=40.20 E-value=2.9e+02 Score=25.20 Aligned_cols=25 Identities=24% Similarity=0.302 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 047357 69 AMLLAKLREYKSDLNKLKREFKRVS 93 (219)
Q Consensus 69 ~~~~~k~~~~~~~l~~l~~~~~~~~ 93 (219)
..|..++.+.+.++..-+.+++.++
T Consensus 326 ~~~~g~l~kl~~eie~kEeei~~L~ 350 (622)
T COG5185 326 QEWPGKLEKLKSEIELKEEEIKALQ 350 (622)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHH
Confidence 3555555666666665555555554
No 206
>PRK00523 hypothetical protein; Provisional
Probab=40.05 E-value=37 Score=22.30 Aligned_cols=20 Identities=15% Similarity=-0.038 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 047357 198 GSIIVALVIAIIFILFYKLS 217 (219)
Q Consensus 198 ~~ii~~l~~~i~~vi~~k~~ 217 (219)
+++++++.+++++++-+-+.
T Consensus 7 ~I~l~i~~li~G~~~Gffia 26 (72)
T PRK00523 7 ALGLGIPLLIVGGIIGYFVS 26 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333445555544343
No 207
>PF12409 P5-ATPase: P5-type ATPase cation transporter
Probab=39.96 E-value=31 Score=24.81 Aligned_cols=20 Identities=10% Similarity=0.353 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 047357 193 NKWIVGSIIVALVIAIIFIL 212 (219)
Q Consensus 193 dk~Il~~ii~~l~~~i~~vi 212 (219)
=|.+++.++.+|.+++++++
T Consensus 15 ~r~~l~~~l~ilT~Gll~L~ 34 (119)
T PF12409_consen 15 WRTILYYFLCILTLGLLYLV 34 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35677776667667766543
No 208
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=39.94 E-value=1.1e+02 Score=20.09 Aligned_cols=22 Identities=23% Similarity=0.280 Sum_probs=12.3
Q ss_pred Cc-hhHHHHHHHHHHHHHHHHHh
Q 047357 1 MS-EVFEGYERQYCELSTNLSRK 22 (219)
Q Consensus 1 Ms-~~f~~ye~e~~~~~~~i~~~ 22 (219)
|| ++|+..+.-+..+++.|...
T Consensus 1 M~~E~l~~LE~ki~~aveti~~L 23 (72)
T PF06005_consen 1 MSLELLEQLEEKIQQAVETIALL 23 (72)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHH
Confidence 55 66666666666666655543
No 209
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=39.73 E-value=1.7e+02 Score=23.94 Aligned_cols=60 Identities=18% Similarity=0.291 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHchHHHHHHHHHHHHHHHhcCChhH------------HHHHHHHHHHHHHHHHHHHHHHHhh
Q 047357 33 DQKKEKYSEIQSGLDDADALIRKMDLEARSLQPNV------------KAMLLAKLREYKSDLNKLKREFKRV 92 (219)
Q Consensus 33 ~~~~~~~~~~~~~l~~a~~~~~~m~~E~~~~~~~~------------r~~~~~k~~~~~~~l~~l~~~~~~~ 92 (219)
.++..+..-+...|.++...++.++.|+.+++... ...+...+.+|+--+..|+.-++.+
T Consensus 118 ~ek~e~~~wl~~~Id~L~~QiE~~E~E~E~L~~~~kKkk~~~~~~~r~~~l~~~ierhk~Hi~kLE~lLR~L 189 (233)
T PF04065_consen 118 KEKEEARDWLKDSIDELNRQIEQLEAEIESLSSQKKKKKKDSTKQERIEELESRIERHKFHIEKLELLLRLL 189 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788899999999999999999988655321 2355566666666666666555544
No 210
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=39.72 E-value=1.2e+02 Score=20.42 Aligned_cols=26 Identities=27% Similarity=0.330 Sum_probs=11.2
Q ss_pred HHHHHhhHHHHHhhhhhhhhhHhHHH
Q 047357 153 EDLNQQRETLLNSRNKLHGVDDAISK 178 (219)
Q Consensus 153 ~~L~~Qre~L~~~~~~~~~i~~~l~~ 178 (219)
.-+...++.+..++.++..++..+..
T Consensus 51 ~ll~~~n~l~~dv~~k~~~v~~~~~~ 76 (90)
T PF06103_consen 51 DLLHNTNELLEDVNEKLEKVDPVFEA 76 (90)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 33344444444444444444443333
No 211
>PRK11281 hypothetical protein; Provisional
Probab=39.65 E-value=4.3e+02 Score=26.99 Aligned_cols=35 Identities=11% Similarity=0.089 Sum_probs=18.5
Q ss_pred HHHHHHhhHHHHHhhhhhhhhhHhHHHHHHHHHHH
Q 047357 152 VEDLNQQRETLLNSRNKLHGVDDAISKSKKVLSSM 186 (219)
Q Consensus 152 ~~~L~~Qre~L~~~~~~~~~i~~~l~~s~~~l~~m 186 (219)
...|..|.+.+.....+...+...++......+.+
T Consensus 291 s~~L~~~t~~~~~l~~~~~~~~~~l~~~~q~~~~i 325 (1113)
T PRK11281 291 SQRLLKATEKLNTLTQQNLRVKNWLDRLTQSERNI 325 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555555444433
No 212
>PF14914 LRRC37AB_C: LRRC37A/B like protein 1 C-terminal domain
Probab=39.10 E-value=35 Score=25.70 Aligned_cols=11 Identities=27% Similarity=0.120 Sum_probs=7.2
Q ss_pred HHHHHHHHHHH
Q 047357 189 RMTRNKWIVGS 199 (219)
Q Consensus 189 r~~~dk~Il~~ 199 (219)
..+.||+|+.+
T Consensus 115 ~gY~nklilai 125 (154)
T PF14914_consen 115 YGYNNKLILAI 125 (154)
T ss_pred ccccchhHHHH
Confidence 34567888754
No 213
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=39.05 E-value=1.2e+02 Score=25.99 Aligned_cols=16 Identities=13% Similarity=0.204 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 047357 5 FEGYERQYCELSTNLS 20 (219)
Q Consensus 5 f~~ye~e~~~~~~~i~ 20 (219)
.+.++.++.....+.+
T Consensus 11 ~~~l~~~~~~~~~E~~ 26 (314)
T PF04111_consen 11 LEQLDKQLEQAEKERD 26 (314)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444433333
No 214
>PHA03240 envelope glycoprotein M; Provisional
Probab=38.74 E-value=33 Score=27.60 Aligned_cols=16 Identities=38% Similarity=0.872 Sum_probs=7.6
Q ss_pred HHHHH-HHHHHHHHHHH
Q 047357 195 WIVGS-IIVALVIAIIF 210 (219)
Q Consensus 195 ~Il~~-ii~~l~~~i~~ 210 (219)
||+.+ ||++++++++|
T Consensus 215 WIiilIIiIiIIIL~cf 231 (258)
T PHA03240 215 WIFIAIIIIIVIILFFF 231 (258)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444 44444444444
No 215
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=38.46 E-value=1.7e+02 Score=21.84 Aligned_cols=93 Identities=10% Similarity=0.159 Sum_probs=57.6
Q ss_pred CchhHHHHHHHHHHHHHHHHHhhhhhcCCC-----ChhH------H-H-------------HHHHHHHchHHH----HHH
Q 047357 1 MSEVFEGYERQYCELSTNLSRKCSSASLLP-----DGDQ------K-K-------------EKYSEIQSGLDD----ADA 51 (219)
Q Consensus 1 Ms~~f~~ye~e~~~~~~~i~~~l~~~~~~~-----~~~~------~-~-------------~~~~~~~~~l~~----a~~ 51 (219)
|++.....-..+..+...+.+.++-+.... ++.. . . ..-..++..+.+ +-.
T Consensus 1 M~DrlTQLQd~ldqL~~~f~~si~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elA~dIi~ 80 (144)
T PF11221_consen 1 MADRLTQLQDCLDQLAEQFCNSIGYLQRDAPPSPLSPNDPSISDPKPQAPPQQQQQAEPAPDPPEEFEENIKELATDIIR 80 (144)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGG-----------------------------HHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCcccccCccccchhhhhhhhcccCCChhhHHHHHHHHHHHHHH
Confidence 888999999999999999998887764320 1111 0 0 011233333333 444
Q ss_pred HHHHHHHHHhcCCh--hHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 047357 52 LIRKMDLEARSLQP--NVKAMLLAKLREYKSDLNKLKREFKRVS 93 (219)
Q Consensus 52 ~~~~m~~E~~~~~~--~~r~~~~~k~~~~~~~l~~l~~~~~~~~ 93 (219)
.-++++..+.++|. .....-..+++....++.....++....
T Consensus 81 kakqIe~LIdsLPg~~~see~Q~~~i~~L~~E~~~~~~el~~~v 124 (144)
T PF11221_consen 81 KAKQIEYLIDSLPGIEVSEEEQLKRIKELEEENEEAEEELQEAV 124 (144)
T ss_dssp HHHHHHHHHHHSTTSSS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55788889999996 3334566788888888888887776553
No 216
>PLN03094 Substrate binding subunit of ER-derived-lipid transporter; Provisional
Probab=38.37 E-value=39 Score=29.64 Aligned_cols=32 Identities=3% Similarity=0.045 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047357 185 SMSRRMTRNKWIVGSIIVALVIAIIFILFYKL 216 (219)
Q Consensus 185 ~m~rr~~~dk~Il~~ii~~l~~~i~~vi~~k~ 216 (219)
.|.||..+..++-+++++.++++++++.|++-
T Consensus 77 ~~~rrsvrEg~VGlfvL~gi~ll~~~~~~L~g 108 (370)
T PLN03094 77 GFGKRSVWEGGVGLFLLSGAALLALTLAWLRG 108 (370)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 46788888888877777777666677777653
No 217
>PF10151 DUF2359: Uncharacterised conserved protein (DUF2359); InterPro: IPR019308 This is a 450 amino acid region of a family of proteins conserved from insects to humans. The function is not known.
Probab=38.17 E-value=1.1e+02 Score=27.91 Aligned_cols=65 Identities=15% Similarity=0.276 Sum_probs=34.2
Q ss_pred HHHHHHHHHhhHHHHHhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047357 149 ISIVEDLNQQRETLLNSRNKLHGVDDAISKSKKVLSSMSRRMTRNKWIVGSIIVALVIAIIFILFYKL 216 (219)
Q Consensus 149 ~~i~~~L~~Qre~L~~~~~~~~~i~~~l~~s~~~l~~m~rr~~~dk~Il~~ii~~l~~~i~~vi~~k~ 216 (219)
.+++..++.-.+.+..-. ..-...+..+++..+.|..|+...++.-..++++++++++-++++-+
T Consensus 221 ~~Tl~sfr~~Nee~~~k~---~~~~~~lk~~dk~Ck~il~K~~~~~c~w~~l~llllvliaG~l~yDv 285 (469)
T PF10151_consen 221 KETLKSFRLKNEELLKKG---KAKDESLKECDKACKVILGKMSGSSCPWTRLLLLLLVLIAGFLAYDV 285 (469)
T ss_pred HHHHHHHHHhHHHHHhcc---ccchHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHhh
Confidence 445555555555552211 12334567788888888888777664443333333333334455544
No 218
>PRK11281 hypothetical protein; Provisional
Probab=38.16 E-value=4.6e+02 Score=26.83 Aligned_cols=25 Identities=16% Similarity=0.264 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 047357 69 AMLLAKLREYKSDLNKLKREFKRVS 93 (219)
Q Consensus 69 ~~~~~k~~~~~~~l~~l~~~~~~~~ 93 (219)
..+.+++..+-+++.+..+++.+++
T Consensus 83 ~~L~k~l~~Ap~~l~~a~~~Le~Lk 107 (1113)
T PRK11281 83 EQLKQQLAQAPAKLRQAQAELEALK 107 (1113)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 3566666666666666666665443
No 219
>TIGR03521 GldG gliding-associated putative ABC transporter substrate-binding component GldG. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldG is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldG abolish the gliding phenotype. GldG, along with GldA and GldF are believed to compose an ABC transporter and are observed as an operon. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=38.08 E-value=54 Score=30.34 Aligned_cols=28 Identities=14% Similarity=0.090 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 047357 191 TRNKWIVGSIIVALVIAIIFILFYKLSH 218 (219)
Q Consensus 191 ~~dk~Il~~ii~~l~~~i~~vi~~k~~~ 218 (219)
..-+++.++++.++++++++++||+-.|
T Consensus 522 ~~~~~~~i~~pp~~~l~~G~~~~~~Rrr 549 (552)
T TIGR03521 522 TTWQLINIGLPILLLLLFGLSFTYIRKR 549 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555666656667778888876544
No 220
>PF13253 DUF4044: Protein of unknown function (DUF4044)
Probab=38.08 E-value=75 Score=17.77 Aligned_cols=24 Identities=13% Similarity=0.116 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 047357 190 MTRNKWIVGSIIVALVIAIIFILF 213 (219)
Q Consensus 190 ~~~dk~Il~~ii~~l~~~i~~vi~ 213 (219)
-..+|+.+.++++.+++.++-+++
T Consensus 7 S~fekiT~v~v~lM~i~tvg~v~~ 30 (35)
T PF13253_consen 7 STFEKITMVVVWLMLILTVGSVVA 30 (35)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677776666666665555544
No 221
>PRK15058 cytochrome b562; Provisional
Probab=38.03 E-value=1.4e+02 Score=22.04 Aligned_cols=15 Identities=7% Similarity=0.208 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q 047357 7 GYERQYCELSTNLSR 21 (219)
Q Consensus 7 ~ye~e~~~~~~~i~~ 21 (219)
+|.+-|..++.+|+.
T Consensus 82 ~Y~~G~d~Li~qID~ 96 (128)
T PRK15058 82 DFRHGFDILVGQIDG 96 (128)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 222
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=37.60 E-value=4.5e+02 Score=26.59 Aligned_cols=20 Identities=20% Similarity=0.288 Sum_probs=7.9
Q ss_pred HHHchHHHHHHHHHHHHHHH
Q 047357 41 EIQSGLDDADALIRKMDLEA 60 (219)
Q Consensus 41 ~~~~~l~~a~~~~~~m~~E~ 60 (219)
+++..++++....+.++.|+
T Consensus 320 eiea~i~~~~~e~~~~d~Ei 339 (1074)
T KOG0250|consen 320 EIEAKIGELKDEVDAQDEEI 339 (1074)
T ss_pred HHHHHHHHHHHhhhhhhHHH
Confidence 33344444433333333333
No 223
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=37.42 E-value=4.7e+02 Score=26.80 Aligned_cols=17 Identities=18% Similarity=0.358 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHhcC
Q 047357 47 DDADALIRKMDLEARSL 63 (219)
Q Consensus 47 ~~a~~~~~~m~~E~~~~ 63 (219)
++.+..+..++.|+..+
T Consensus 861 ~~~~~~ie~l~kE~e~~ 877 (1293)
T KOG0996|consen 861 KELEEQIEELKKEVEEL 877 (1293)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444445555554443
No 224
>PF13955 Fst_toxin: Toxin Fst, type I toxin-antitoxin system; PDB: 2KV5_A.
Probab=37.19 E-value=56 Score=16.03 Aligned_cols=18 Identities=28% Similarity=0.656 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 047357 199 SIIVALVIAIIFILFYKL 216 (219)
Q Consensus 199 ~ii~~l~~~i~~vi~~k~ 216 (219)
.+|+=+++++++.++-+|
T Consensus 3 ~iIaPi~VGvvl~l~~~w 20 (21)
T PF13955_consen 3 TIIAPIVVGVVLTLFDHW 20 (21)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eehhhHHHHHHHHHHHhh
Confidence 345555566666666665
No 225
>TIGR03142 cytochro_ccmI cytochrome c-type biogenesis protein CcmI. This TPR repeat-containing protein is the CcmI protein (also called CycH) of c-type cytochrome biogenesis. CcmI is thought to act as an apo-cytochrome c chaperone. This model describes the N-terminal region of the protein, Members of this protein family
Probab=36.66 E-value=1.6e+02 Score=21.04 Aligned_cols=17 Identities=29% Similarity=0.540 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHhh
Q 047357 200 IIVALVIAIIFILFYKL 216 (219)
Q Consensus 200 ii~~l~~~i~~vi~~k~ 216 (219)
++++++.++.+.+|+++
T Consensus 98 ~~~~~lp~~a~~lY~~l 114 (117)
T TIGR03142 98 VVVLLLPVLALGLYLKL 114 (117)
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 33444555566677654
No 226
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=36.48 E-value=1.4e+02 Score=20.44 Aligned_cols=53 Identities=26% Similarity=0.312 Sum_probs=35.4
Q ss_pred HHHHchHHHHHHHHHHHHHHHhcCC-----hhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047357 40 SEIQSGLDDADALIRKMDLEARSLQ-----PNVKAMLLAKLREYKSDLNKLKREFKRV 92 (219)
Q Consensus 40 ~~~~~~l~~a~~~~~~m~~E~~~~~-----~~~r~~~~~k~~~~~~~l~~l~~~~~~~ 92 (219)
.++...+..++..+..........+ +..+..+...+.....++.+|.+.+.-.
T Consensus 8 ~ev~~sl~~l~~~~~~~~~~~~~~~~~~e~~~~~~eL~~~l~~ie~~L~DL~~aV~iv 65 (97)
T PF09177_consen 8 DEVQSSLDRLESLYRRWQRLRSDTSSSEELKWLKRELRNALQSIEWDLEDLEEAVRIV 65 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777777777655554 2234567777777777777777776544
No 227
>PF11857 DUF3377: Domain of unknown function (DUF3377); InterPro: IPR021805 This domain is functionally uncharacterised and found at the C terminus of peptidases belonging to MEROPS peptidase family M10A, membrane-type matrix metallopeptidases (clan MA). ; GO: 0004222 metalloendopeptidase activity
Probab=36.41 E-value=27 Score=23.06 Aligned_cols=14 Identities=14% Similarity=0.759 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHH
Q 047357 200 IIVALVIAIIFILF 213 (219)
Q Consensus 200 ii~~l~~~i~~vi~ 213 (219)
+.++|+++.++.++
T Consensus 39 ~L~LCiLvl~yai~ 52 (74)
T PF11857_consen 39 VLLLCILVLIYAIF 52 (74)
T ss_pred HHHHHHHHHHHHhh
Confidence 33444444444433
No 228
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=36.23 E-value=3.3e+02 Score=24.65 Aligned_cols=24 Identities=4% Similarity=0.295 Sum_probs=15.5
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhh
Q 047357 3 EVFEGYERQYCELSTNLSRKCSSA 26 (219)
Q Consensus 3 ~~f~~ye~e~~~~~~~i~~~l~~~ 26 (219)
.+|+.+...+...-.++...+.+.
T Consensus 355 ~lwd~h~~~l~~~e~~l~~~l~~~ 378 (473)
T PF14643_consen 355 QLWDEHRKKLSKQEEELEKRLEQC 378 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667666666666666666555
No 229
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=36.07 E-value=84 Score=17.72 Aligned_cols=11 Identities=18% Similarity=0.492 Sum_probs=5.2
Q ss_pred HHHHHHHHHHH
Q 047357 193 NKWIVGSIIVA 203 (219)
Q Consensus 193 dk~Il~~ii~~ 203 (219)
.+||++++..+
T Consensus 14 r~Wi~F~l~mi 24 (38)
T PF09125_consen 14 RGWIAFALAMI 24 (38)
T ss_dssp HHHHHHHHHHH
T ss_pred HhHHHHHHHHH
Confidence 34555544333
No 230
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=35.99 E-value=33 Score=28.27 Aligned_cols=29 Identities=28% Similarity=0.312 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047357 184 SSMSRRMTRNKWIVGSIIVALVIAIIFIL 212 (219)
Q Consensus 184 ~~m~rr~~~dk~Il~~ii~~l~~~i~~vi 212 (219)
..+..+-.+.+.|++++++++++++.+.+
T Consensus 187 SSVG~~faRkR~i~f~llgllfliiaigl 215 (256)
T PF09788_consen 187 SSVGPRFARKRAIIFFLLGLLFLIIAIGL 215 (256)
T ss_pred ccccchHhhhHHHHHHHHHHHHHHHHHHH
Confidence 34455666777777776666655555443
No 231
>PHA03386 P10 fibrous body protein; Provisional
Probab=35.97 E-value=1.3e+02 Score=20.87 Aligned_cols=26 Identities=12% Similarity=0.224 Sum_probs=21.5
Q ss_pred HHHHHHhhHHHHHhhhhhhhhhHhHH
Q 047357 152 VEDLNQQRETLLNSRNKLHGVDDAIS 177 (219)
Q Consensus 152 ~~~L~~Qre~L~~~~~~~~~i~~~l~ 177 (219)
...|..|.++|.....++.+|++-|.
T Consensus 35 ~~~LDa~~~qL~~l~tkV~~Iq~iLn 60 (94)
T PHA03386 35 SQPLDGLPAQLTELDTKVSDIQSILT 60 (94)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHhcC
Confidence 56688999999998888888887665
No 232
>KOG3838 consensus Mannose lectin ERGIC-53, involved in glycoprotein traffic [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.84 E-value=3.2e+02 Score=24.36 Aligned_cols=27 Identities=11% Similarity=0.144 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcCCCChh
Q 047357 6 EGYERQYCELSTNLSRKCSSASLLPDGD 33 (219)
Q Consensus 6 ~~ye~e~~~~~~~i~~~l~~~~~~~~~~ 33 (219)
+.|.+||.....++...=...++. +++
T Consensus 275 ~kyqeEfe~~q~elek~k~efkk~-hpd 301 (497)
T KOG3838|consen 275 AKYQEEFEWAQLELEKRKDEFKKS-HPD 301 (497)
T ss_pred HHHHHHHHHHHHHHhhhHhhhccC-Cch
Confidence 478888988888888887777775 544
No 233
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=35.80 E-value=3.1e+02 Score=24.21 Aligned_cols=30 Identities=10% Similarity=0.289 Sum_probs=18.0
Q ss_pred HHHHhhhhhhhhhHhHHHHHHHHHHHHHHH
Q 047357 161 TLLNSRNKLHGVDDAISKSKKVLSSMSRRM 190 (219)
Q Consensus 161 ~L~~~~~~~~~i~~~l~~s~~~l~~m~rr~ 190 (219)
.+.........+..++..+..+...+..|.
T Consensus 336 ~l~~~~~~~~~L~r~~~~~~~~y~~ll~r~ 365 (444)
T TIGR03017 336 ELNRQRDEMSVLQRDVENAQRAYDAAMQRY 365 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455566666777777766666654
No 234
>COG1422 Predicted membrane protein [Function unknown]
Probab=35.65 E-value=2.3e+02 Score=22.62 Aligned_cols=37 Identities=14% Similarity=0.255 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHhhhhhhhhhHhHHHHHH
Q 047357 145 EELGISIVEDLNQQRETLLNSRNKLHGVDDAISKSKK 181 (219)
Q Consensus 145 e~~g~~i~~~L~~Qre~L~~~~~~~~~i~~~l~~s~~ 181 (219)
..+=.+++..+--..|.+.+.++.+++.+.....|.+
T Consensus 57 ~gl~~~i~~~~liD~ekm~~~qk~m~efq~e~~eA~~ 93 (201)
T COG1422 57 TGLYITILQKLLIDQEKMKELQKMMKEFQKEFREAQE 93 (201)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666677777777777777777776666664
No 235
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.53 E-value=1.3e+02 Score=19.67 Aligned_cols=26 Identities=15% Similarity=0.328 Sum_probs=18.4
Q ss_pred HHHHHHchHHHHHHHHHHHHHHHhcC
Q 047357 38 KYSEIQSGLDDADALIRKMDLEARSL 63 (219)
Q Consensus 38 ~~~~~~~~l~~a~~~~~~m~~E~~~~ 63 (219)
.+.+++.++++|-+++.-+..|+..+
T Consensus 5 v~ekLE~KiqqAvdTI~LLQmEieEL 30 (79)
T COG3074 5 VFEKLEAKVQQAIDTITLLQMEIEEL 30 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777778877777777776654
No 236
>PF09716 ETRAMP: Malarial early transcribed membrane protein (ETRAMP); InterPro: IPR006389 These sequences represent a family of proteins from the malaria parasite Plasmodium falciparum, several of which have been shown to be expressed specifically in the ring stage as well as the rodent parasite Plasmodium yoelii []. A homologue from Plasmodium chabaudi was localized to the parasitophorous vacuole membrane []. Members have an initial hydrophobic, Phe/Tyr-rich stretch long enough to span the membrane, a highly charged region rich in Lys, a second putative transmembrane region, and a second highly charged, low complexity sequence region. Some members have up to 100 residues of additional C-terminal sequence. These genes have been shown to be found in the sub-telomeric regions of both Plasmodium falciparum and P. yoelii chromosomes.
Probab=35.51 E-value=1.1e+02 Score=20.53 Aligned_cols=20 Identities=25% Similarity=0.310 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 047357 180 KKVLSSMSRRMTRNKWIVGS 199 (219)
Q Consensus 180 ~~~l~~m~rr~~~dk~Il~~ 199 (219)
+..-+.|.++..++|.+++.
T Consensus 40 k~~d~~i~kK~k~kK~iiiS 59 (84)
T PF09716_consen 40 KKIDDKIEKKKKNKKKIIIS 59 (84)
T ss_pred hhhhHHHHHHHhccchhhHH
Confidence 34447777777777776653
No 237
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=35.07 E-value=1.3e+02 Score=19.77 Aligned_cols=27 Identities=22% Similarity=0.348 Sum_probs=23.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047357 65 PNVKAMLLAKLREYKSDLNKLKREFKR 91 (219)
Q Consensus 65 ~~~r~~~~~k~~~~~~~l~~l~~~~~~ 91 (219)
+..+..+..++.+|....+.++.-+..
T Consensus 46 ~~~k~~~r~ki~eY~~RAE~Lk~~l~~ 72 (77)
T cd02683 46 EAKKKNLRQKISEYMDRAEAIKKRLDQ 72 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566889999999999999999988754
No 238
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=34.93 E-value=29 Score=32.49 Aligned_cols=68 Identities=24% Similarity=0.433 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHhhHHHHHhhhhhhhhhHhH--HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhccC
Q 047357 147 LGISIVEDLNQQRETLLNSRNKLHGVDDAI--SKSKKVLSSMSRRMTRNKWIVGSI--IVALVIAIIFILFYKLSHH 219 (219)
Q Consensus 147 ~g~~i~~~L~~Qre~L~~~~~~~~~i~~~l--~~s~~~l~~m~rr~~~dk~Il~~i--i~~l~~~i~~vi~~k~~~~ 219 (219)
.+..++..|..||..|.= ...+..+...- ..+. --....-.|-||++++ =++++++|++++||++-|+
T Consensus 225 ~AA~~Ln~ld~Q~~Al~L-Gy~V~~~~AqPv~~~a~----P~~~s~~~NlWII~gVlvPv~vV~~Iiiil~~~LCRk 296 (684)
T PF12877_consen 225 TAAKDLNLLDSQRMALIL-GYRVQGIVAQPVEKQAE----PPAKSPPNNLWIIAGVLVPVLVVLLIIIILYWKLCRK 296 (684)
T ss_pred HHHHHHhccCHHHHHHhc-CceeccccccccccccC----CCCCCCCCCeEEEehHhHHHHHHHHHHHHHHHHHhcc
Confidence 477888889999988752 11221111100 0000 0001123456776443 3344566667788887664
No 239
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=34.84 E-value=51 Score=27.74 Aligned_cols=6 Identities=33% Similarity=0.650 Sum_probs=2.8
Q ss_pred hhhccC
Q 047357 99 EELLES 104 (219)
Q Consensus 99 ~~L~~~ 104 (219)
++.||+
T Consensus 117 ~~~fg~ 122 (295)
T TIGR01478 117 EEMFGD 122 (295)
T ss_pred HHHhCC
Confidence 344544
No 240
>PRK14584 hmsS hemin storage system protein; Provisional
Probab=34.49 E-value=62 Score=24.62 Aligned_cols=24 Identities=21% Similarity=0.253 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 047357 192 RNKWIVGSIIVALVIAIIFILFYKL 216 (219)
Q Consensus 192 ~dk~Il~~ii~~l~~~i~~vi~~k~ 216 (219)
.+.+.+|++|+++ -++++++|.|+
T Consensus 60 ~~tl~~yl~ial~-nAvlLI~WA~Y 83 (153)
T PRK14584 60 LTTIALYLAIAAF-NAVLLIIWAKY 83 (153)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 4667778777765 55566778664
No 241
>PF15102 TMEM154: TMEM154 protein family
Probab=34.49 E-value=17 Score=27.34 Aligned_cols=7 Identities=0% Similarity=0.330 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 047357 208 IIFILFY 214 (219)
Q Consensus 208 i~~vi~~ 214 (219)
+++++++
T Consensus 72 Ll~vV~l 78 (146)
T PF15102_consen 72 LLSVVCL 78 (146)
T ss_pred HHHHHHh
Confidence 3333433
No 242
>PF09577 Spore_YpjB: Sporulation protein YpjB (SpoYpjB); InterPro: IPR014231 Proteins in thie entry, typified by YpjB, are restricted to a subset of the endospore-forming bacteria which includes Bacillus species, but not species. In Bacillus subtilis, ypjB was found to be part of the sigma-E regulon []. Sigma-E is a sporulation sigma factor that regulates expression in the mother cell compartment. Null mutants of ypjB show a sporulation defect, but this gene is not, however, a part of the endospore formation minimal gene set.
Probab=33.85 E-value=2.6e+02 Score=22.81 Aligned_cols=37 Identities=14% Similarity=0.290 Sum_probs=20.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047357 55 KMDLEARSLQPNVKAMLLAKLREYKSDLNKLKREFKR 91 (219)
Q Consensus 55 ~m~~E~~~~~~~~r~~~~~k~~~~~~~l~~l~~~~~~ 91 (219)
+|.+-+..+.....+-|.+-......++..+++....
T Consensus 80 ~~RLavDAl~~~~qPLW~~~e~~i~~~~~~mk~a~~~ 116 (232)
T PF09577_consen 80 QFRLAVDALTHKHQPLWLQYEKPIMEDFQRMKQAAQK 116 (232)
T ss_pred HHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444444444455666666666677777666543
No 243
>PF09011 HMG_box_2: HMG-box domain; InterPro: IPR015101 This domain is predominantly found in Maelstrom homologue proteins. It has no known function. ; GO: 0005634 nucleus; PDB: 2EQZ_A 1V64_A 2CTO_A 1H5P_A 3TQ6_A 3FGH_A 3TMM_A 1J3X_A 2YRQ_A 1AAB_A ....
Probab=33.54 E-value=1.3e+02 Score=19.20 Aligned_cols=36 Identities=14% Similarity=0.186 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHH
Q 047357 49 ADALIRKMDLEARSLQPNVKAMLLAKLREYKSDLNK 84 (219)
Q Consensus 49 a~~~~~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~~ 84 (219)
..++...+-.+.+.+++++|..|..+.+..+..+..
T Consensus 32 ~~e~~k~~~~~Wk~Ls~~EK~~Y~~~A~~~k~~y~~ 67 (73)
T PF09011_consen 32 FREVMKEISERWKSLSEEEKEPYEERAKEDKERYER 67 (73)
T ss_dssp HHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 345566677788999999999999988876665543
No 244
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=33.45 E-value=2.4e+02 Score=22.14 Aligned_cols=88 Identities=11% Similarity=0.168 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhc---CC-CChhHHHHHHHHHHchHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHH
Q 047357 5 FEGYERQYCELSTNLSRKCSSAS---LL-PDGDQKKEKYSEIQSGLDDADALIRKMDLEARSLQPNVKAMLLAKLREYKS 80 (219)
Q Consensus 5 f~~ye~e~~~~~~~i~~~l~~~~---~~-~~~~~~~~~~~~~~~~l~~a~~~~~~m~~E~~~~~~~~r~~~~~k~~~~~~ 80 (219)
.+.+.+++..+...+...-..+. .. +++++|...+..++..-.+...+-.+++. .....|..=..+...+..++.
T Consensus 71 ~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~-~~~~Dp~~i~~~~~~~~~~~~ 149 (188)
T PF03962_consen 71 LEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKELEK-YSENDPEKIEKLKEEIKIAKE 149 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHHH
Confidence 34445555554444444333332 11 14577877777766666666555555552 233444444556666666666
Q ss_pred HHHHHHHHHHhhc
Q 047357 81 DLNKLKREFKRVS 93 (219)
Q Consensus 81 ~l~~l~~~~~~~~ 93 (219)
..+.....+--+.
T Consensus 150 ~anrwTDNI~~l~ 162 (188)
T PF03962_consen 150 AANRWTDNIFSLK 162 (188)
T ss_pred HHHHHHhhHHHHH
Confidence 6666665554443
No 245
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.38 E-value=3.6e+02 Score=24.22 Aligned_cols=44 Identities=16% Similarity=0.308 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhHhHHHHHHH
Q 047357 139 RVMLETEELGISIVEDLNQQRETLLNSRNKLHGVDDAISKSKKV 182 (219)
Q Consensus 139 ~~~~ete~~g~~i~~~L~~Qre~L~~~~~~~~~i~~~l~~s~~~ 182 (219)
.++-++-..|.+++.....|--.-..+.+-++++...+++...+
T Consensus 313 kvvl~AyksGs~alK~il~~~~s~ekVed~Ldev~et~d~~~EV 356 (439)
T KOG2911|consen 313 KVVLQAYKSGSEALKAILAQGGSTEKVEDVLDEVNETLDRQEEV 356 (439)
T ss_pred HHHHHHHHHhHHHHHHHHhccCChhhHHHHHHHHHHHHhhHHHH
Confidence 45555556666666666665444445555555555555554433
No 246
>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.27 E-value=1.6e+02 Score=23.50 Aligned_cols=15 Identities=33% Similarity=0.470 Sum_probs=6.7
Q ss_pred HHHHHHhhHHHHHhh
Q 047357 152 VEDLNQQRETLLNSR 166 (219)
Q Consensus 152 ~~~L~~Qre~L~~~~ 166 (219)
+..+..||+.|.+++
T Consensus 84 l~tie~Qr~alEnA~ 98 (221)
T KOG1656|consen 84 LSTIEFQREALENAN 98 (221)
T ss_pred HHHHHHHHHHHHccc
Confidence 344444444444443
No 247
>KOG4684 consensus Uncharacterized conserved protein, contains C4-type Zn-finger [General function prediction only]
Probab=33.25 E-value=75 Score=25.62 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047357 182 VLSSMSRRMTRNKWIVGSIIVALVIA 207 (219)
Q Consensus 182 ~l~~m~rr~~~dk~Il~~ii~~l~~~ 207 (219)
-+..+.+|-.+.+.|+++|+++++++
T Consensus 197 KvSsvGsrfar~Ra~~ffilal~~av 222 (275)
T KOG4684|consen 197 KVSSVGSRFARRRALLFFILALTVAV 222 (275)
T ss_pred chhhhhhHHhhhhhHHHHHHHHHHHH
Confidence 35667777777788877766655433
No 248
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=33.16 E-value=2.7e+02 Score=22.76 Aligned_cols=84 Identities=12% Similarity=0.186 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHhhhhhcCC-CChhHHHHHHHHHHchHHHHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHHHHHHHHHHHH
Q 047357 11 QYCELSTNLSRKCSSASLL-PDGDQKKEKYSEIQSGLDDADALIRKMDLEARSL-QPNVKAMLLAKLREYKSDLNKLKRE 88 (219)
Q Consensus 11 e~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~~~~~~l~~a~~~~~~m~~E~~~~-~~~~r~~~~~k~~~~~~~l~~l~~~ 88 (219)
.|...++++. .++.+... .+.++....+..++..|+.++...+.+.--+... +..+--+...++.+.+.+++.++.+
T Consensus 106 ~~~~~l~~l~-~~g~v~~~~~~~~DvT~~y~D~~arl~~l~~~~~rl~~ll~ka~~~~d~l~ie~~L~~v~~eIe~~~~~ 184 (262)
T PF14257_consen 106 KFDSFLDELS-ELGKVTSRNISSEDVTEQYVDLEARLKNLEAEEERLLELLEKAKTVEDLLEIERELSRVRSEIEQLEGQ 184 (262)
T ss_pred HHHHHHHHHh-ccCceeeeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555 33443322 1456677777788888888877777776655543 3455567889999999999999998
Q ss_pred HHhhcch
Q 047357 89 FKRVSSS 95 (219)
Q Consensus 89 ~~~~~~~ 95 (219)
++.+...
T Consensus 185 ~~~l~~~ 191 (262)
T PF14257_consen 185 LKYLDDR 191 (262)
T ss_pred HHHHHHh
Confidence 8877643
No 249
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=33.14 E-value=2.4e+02 Score=25.20 Aligned_cols=26 Identities=19% Similarity=0.277 Sum_probs=15.9
Q ss_pred HHHHHHchHHHHHHHHHHHHHHHhcC
Q 047357 38 KYSEIQSGLDDADALIRKMDLEARSL 63 (219)
Q Consensus 38 ~~~~~~~~l~~a~~~~~~m~~E~~~~ 63 (219)
.+..++..+.+++..+.+.+.++..+
T Consensus 237 ~~~~~~~~i~~l~~~i~~~~~~~~~~ 262 (457)
T TIGR01000 237 ILATIQQQIDQLQKSIASYQVQKAGL 262 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44555666666666666666665554
No 250
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=33.00 E-value=2e+02 Score=21.13 Aligned_cols=33 Identities=15% Similarity=0.276 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhh
Q 047357 138 RRVMLETEELGISIVEDLNQQRETLLNSRNKLH 170 (219)
Q Consensus 138 ~~~~~ete~~g~~i~~~L~~Qre~L~~~~~~~~ 170 (219)
..-+++..++...|.+++..=++.+.++..+++
T Consensus 74 d~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~ 106 (126)
T PF07889_consen 74 DDKLDEQKEISKQIKDEVTEVREDVSQIGDDVD 106 (126)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 333334444444444444333333333333333
No 251
>PRK00753 psbL photosystem II reaction center L; Provisional
Probab=32.89 E-value=73 Score=18.02 Aligned_cols=16 Identities=19% Similarity=0.567 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 047357 198 GSIIVALVIAIIFILF 213 (219)
Q Consensus 198 ~~ii~~l~~~i~~vi~ 213 (219)
+++.+++++++.|--|
T Consensus 21 ~GlLlifvl~vLFssY 36 (39)
T PRK00753 21 LGLLLVFVLGILFSSY 36 (39)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 4455556566555444
No 252
>PF08651 DASH_Duo1: DASH complex subunit Duo1; InterPro: IPR013960 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=32.79 E-value=1.5e+02 Score=19.71 Aligned_cols=35 Identities=14% Similarity=0.283 Sum_probs=20.7
Q ss_pred HHHhhHHHHHhhhhhhhhhHhHHHHHHHHHHHHHH
Q 047357 155 LNQQRETLLNSRNKLHGVDDAISKSKKVLSSMSRR 189 (219)
Q Consensus 155 L~~Qre~L~~~~~~~~~i~~~l~~s~~~l~~m~rr 189 (219)
|....++|.+++.-+..+...|..|..-+..+.+.
T Consensus 3 L~kEL~~Lr~IN~~ie~~~~~L~~a~~~~~~v~~~ 37 (78)
T PF08651_consen 3 LEKELEQLRKINPVIEGLIETLRSAKSNMNRVQET 37 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666666666666555555554
No 253
>PTZ00370 STEVOR; Provisional
Probab=32.73 E-value=58 Score=27.46 Aligned_cols=6 Identities=33% Similarity=0.650 Sum_probs=2.9
Q ss_pred hhhccC
Q 047357 99 EELLES 104 (219)
Q Consensus 99 ~~L~~~ 104 (219)
++.||+
T Consensus 116 ee~fg~ 121 (296)
T PTZ00370 116 EEMFGD 121 (296)
T ss_pred HHHhcC
Confidence 445554
No 254
>PRK10780 periplasmic chaperone; Provisional
Probab=32.67 E-value=2.2e+02 Score=21.57 Aligned_cols=31 Identities=10% Similarity=0.198 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 047357 49 ADALIRKMDLEARSLQPNVKAMLLAKLREYK 79 (219)
Q Consensus 49 a~~~~~~m~~E~~~~~~~~r~~~~~k~~~~~ 79 (219)
++.....++.+...+++..+......+....
T Consensus 66 lq~~~~~~q~~~~~ms~~~~~~~~~el~~~~ 96 (165)
T PRK10780 66 LQAKMQKLQRDGSTMKGSDRTKLEKDVMAQR 96 (165)
T ss_pred HHHHHHHHHhcccccCHHHHHHHHHHHHHHH
Confidence 3333334444444455555544444444333
No 255
>KOG3046 consensus Transcription factor, subunit of SRB subcomplex of RNA polymerase II [Transcription]
Probab=32.54 E-value=2.2e+02 Score=21.40 Aligned_cols=60 Identities=23% Similarity=0.382 Sum_probs=44.6
Q ss_pred hhHHHHHHHHHHchHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHH---HHHHHHHHh
Q 047357 32 GDQKKEKYSEIQSGLDDADALIRKMDLEARSLQPNVKAMLLAKLREYKSDL---NKLKREFKR 91 (219)
Q Consensus 32 ~~~~~~~~~~~~~~l~~a~~~~~~m~~E~~~~~~~~r~~~~~k~~~~~~~l---~~l~~~~~~ 91 (219)
.++-...+..++..+...-+.+.++.+-+.+.+|+....+.+++...=..+ .+++.++..
T Consensus 7 ~~q~~ekl~~l~~~le~~~e~~~~Lgl~vs~F~~tsq~~L~qrl~tLv~~L~~l~~~s~k~n~ 69 (147)
T KOG3046|consen 7 NDQMQEKLAQLENSLEKFLENFRQLGLIVSNFQPTSQDALNQRLNTLVRGLQDLDKLSSKLND 69 (147)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCCcHHHHHHHHHHHHHHhhhhHHHHHhhcc
Confidence 355556678888889999999999999999999887778887776655444 445555543
No 256
>COG4499 Predicted membrane protein [Function unknown]
Probab=32.52 E-value=54 Score=28.86 Aligned_cols=27 Identities=30% Similarity=0.522 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 047357 191 TRNKWIVGSIIVALVIAIIFILFYKLS 217 (219)
Q Consensus 191 ~~dk~Il~~ii~~l~~~i~~vi~~k~~ 217 (219)
..-||+-.+.|++++++++++.|+=|+
T Consensus 218 ~ifk~~giGliillvl~li~~~Y~~f~ 244 (434)
T COG4499 218 TIFKYFGIGLIILLVLLLIYFTYYYFS 244 (434)
T ss_pred eehhhHHHhHHHHHHHHHHHHHHHHHH
Confidence 345677776666666666666665454
No 257
>PF11119 DUF2633: Protein of unknown function (DUF2633); InterPro: IPR022576 This family is conserved largely in Proteobacteria. Several members are named as YfgG. The function is not known.
Probab=32.43 E-value=69 Score=20.18 Aligned_cols=24 Identities=8% Similarity=0.056 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 047357 194 KWIVGSIIVALVIAIIFILFYKLS 217 (219)
Q Consensus 194 k~Il~~ii~~l~~~i~~vi~~k~~ 217 (219)
|+|+.+-+++++.-+++..+--|.
T Consensus 11 riVLLISfiIlfgRl~Y~~I~a~~ 34 (59)
T PF11119_consen 11 RIVLLISFIILFGRLIYSAIGAWV 34 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHH
Confidence 455544444443333333333333
No 258
>cd07625 BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps17p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=32.42 E-value=2.8e+02 Score=22.62 Aligned_cols=27 Identities=19% Similarity=0.284 Sum_probs=13.9
Q ss_pred HHHHchHHHHHHHHHHHHHHHhcCChh
Q 047357 40 SEIQSGLDDADALIRKMDLEARSLQPN 66 (219)
Q Consensus 40 ~~~~~~l~~a~~~~~~m~~E~~~~~~~ 66 (219)
.++...|++++....++......+..+
T Consensus 160 deA~~~l~eA~~~e~~l~~k~~rIs~n 186 (230)
T cd07625 160 DEAIRQLEEATKHEHDLSLKLKRITGN 186 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555544433
No 259
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=32.38 E-value=2e+02 Score=21.06 Aligned_cols=27 Identities=33% Similarity=0.402 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 047357 67 VKAMLLAKLREYKSDLNKLKREFKRVS 93 (219)
Q Consensus 67 ~r~~~~~k~~~~~~~l~~l~~~~~~~~ 93 (219)
.+..|..-+..|..-++.|.+++....
T Consensus 87 yk~eYk~llk~y~~~~~~L~k~I~~~e 113 (126)
T PF09403_consen 87 YKDEYKELLKKYKDLLNKLDKEIAEQE 113 (126)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367899999999988888888886544
No 260
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=32.28 E-value=79 Score=21.64 Aligned_cols=17 Identities=24% Similarity=0.333 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHh
Q 047357 199 SIIVALVIAIIFILFYK 215 (219)
Q Consensus 199 ~ii~~l~~~i~~vi~~k 215 (219)
+++.+|+++..|+-+.|
T Consensus 41 ~~iFil~VilwfvCC~k 57 (94)
T PF05393_consen 41 CGIFILLVILWFVCCKK 57 (94)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444443
No 261
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=32.24 E-value=2.2e+02 Score=21.39 Aligned_cols=49 Identities=18% Similarity=0.331 Sum_probs=27.1
Q ss_pred HHHHHHHHchHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047357 36 KEKYSEIQSGLDDADALIRKMDLEARSLQPNVKAMLLAKLREYKSDLNKLKREFKRV 92 (219)
Q Consensus 36 ~~~~~~~~~~l~~a~~~~~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~~l~~~~~~~ 92 (219)
+..+..+...|.+++++++. .+.-.+-.+. +--.|...+.++..++.+.
T Consensus 65 ~ee~e~L~~~L~~g~~LV~k-------~sk~~r~n~~-kk~~y~~Ki~~le~~l~~f 113 (147)
T PF05659_consen 65 QEEIERLKELLEKGKELVEK-------CSKVRRWNLY-KKPRYARKIEELEESLRRF 113 (147)
T ss_pred hHHHHHHHHHHHHHHHHHHH-------hccccHHHHH-hhHhHHHHHHHHHHHHHHH
Confidence 45566666666666666643 3322222233 3334677777777777544
No 262
>PF01105 EMP24_GP25L: emp24/gp25L/p24 family/GOLD; InterPro: IPR009038 The GOLD (for Golgi dynamics) domain is a protein module found in several eukaryotic Golgi and lipid-traffic proteins. It is typically between 90 and 150 amino acids long. Most of the size difference observed in the GOLD-domain superfamily is traceable to a single large low-complexity insert that is seen in some versions of the domain. With the exception of the p24 proteins, which have a simple architecture with the GOLD domain as their only globular domain, all other GOLD-domain proteins contain additional conserved globular domains. In these proteins, the GOLD domain co-occurs with lipid-, sterol- or fatty acid-binding domains such as PH, CRAL-TRIO, FYVE oxysterol binding- and acyl CoA-binding domains, suggesting that these proteins may interact with membranes. The GOLD domain can also be found associated with a RUN domain, which may have a role in the interaction of various proteins with cytoskeletal filaments. The GOLD domain is predicted to mediate diverse protein-protein interactions []. A secondary structure prediction for the GOLD domain reveals that it is likely to adopt a compact all-beta-fold structure with six to seven strands. Most of the sequence conservation is centred on the hydrophobic cores that support these predicted strands. The predicted secondary-structure elements and the size of the conserved core of the domain suggests that it may form a beta- sandwich fold with the strands arranged in two beta sheets stacked on each other []. Some proteins known to contain a GOLD domain are listed below: Eukaryotic proteins of the p24 family. Animal Sec14-like proteins. They are involved in secretion. Human Golgi resident protein GCP60. It interacts with the Golgi integral membrane protein Giantin. Yeast oxysterol-binding protein homologue 3 (OSH3). ; GO: 0006810 transport, 0016021 integral to membrane; PDB: 1P23_A 1M23_A.
Probab=32.22 E-value=10 Score=28.74 Aligned_cols=31 Identities=16% Similarity=0.225 Sum_probs=0.0
Q ss_pred hHHHHHhhhhhhhhhHhHHHHHHHHHHHHHH
Q 047357 159 RETLLNSRNKLHGVDDAISKSKKVLSSMSRR 189 (219)
Q Consensus 159 re~L~~~~~~~~~i~~~l~~s~~~l~~m~rr 189 (219)
.+.+..+...+..+...+.........+..|
T Consensus 111 ~~~~~~~~~~l~~l~~~l~~i~~~q~~~~~r 141 (183)
T PF01105_consen 111 KEHLDPLEESLEKLESNLKEIKDEQKYLRER 141 (183)
T ss_dssp -------------------------------
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444433
No 263
>CHL00038 psbL photosystem II protein L
Probab=32.12 E-value=89 Score=17.61 Aligned_cols=16 Identities=19% Similarity=0.559 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 047357 198 GSIIVALVIAIIFILF 213 (219)
Q Consensus 198 ~~ii~~l~~~i~~vi~ 213 (219)
|++.+++++++.|--|
T Consensus 20 ~GLLlifvl~vlfssy 35 (38)
T CHL00038 20 WGLLLIFVLAVLFSNY 35 (38)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455555555554443
No 264
>KOG2736 consensus Presenilin [Signal transduction mechanisms]
Probab=32.11 E-value=63 Score=28.32 Aligned_cols=27 Identities=22% Similarity=0.394 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 047357 191 TRNKWIVGSIIVALVIAIIFILFYKLS 217 (219)
Q Consensus 191 ~~dk~Il~~ii~~l~~~i~~vi~~k~~ 217 (219)
..|.+++.++|++..++.++..++||.
T Consensus 70 l~N~li~i~viv~~Tfllv~ly~~rfy 96 (406)
T KOG2736|consen 70 LLNALIMISVIVVMTFLLVVLYKYRFY 96 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457778877777766666555555554
No 265
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=32.10 E-value=2.9e+02 Score=22.74 Aligned_cols=36 Identities=11% Similarity=0.174 Sum_probs=20.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 047357 129 QSGERIRESRRVMLETEELGISIVEDLNQQRETLLN 164 (219)
Q Consensus 129 ~~~~~L~~s~~~~~ete~~g~~i~~~L~~Qre~L~~ 164 (219)
.-++-+.+...++.+-...-..|-.++..=++....
T Consensus 196 el~qLfndm~~~V~eq~e~Vd~I~~~~~~~~~n~~~ 231 (280)
T COG5074 196 ELTQLFNDMEELVIEQQENVDVIDKNVEDAQENVEQ 231 (280)
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHhhHhhHHhhHHH
Confidence 334555666666666666666666665554444333
No 266
>PF02238 COX7a: Cytochrome c oxidase subunit VIIa; InterPro: IPR003177 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. This family is composed of the heart and liver isoforms of cytochrome c oxidase subunit VIIa. ; GO: 0004129 cytochrome-c oxidase activity, 0009055 electron carrier activity, 0005746 mitochondrial respiratory chain; PDB: 2DYS_J 3AG3_W 3AG1_J 1OCC_J 3ABL_J 3AG4_J 3ABM_J 2EIL_W 3AG2_W 2EIM_W ....
Probab=31.68 E-value=32 Score=21.45 Aligned_cols=27 Identities=7% Similarity=-0.025 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047357 189 RMTRNKWIVGSIIVALVIAIIFILFYK 215 (219)
Q Consensus 189 r~~~dk~Il~~ii~~l~~~i~~vi~~k 215 (219)
.-..|.++..+.+.+++++.++.+|..
T Consensus 22 Gg~~D~~Ly~~Tm~L~~~gt~~~l~~l 48 (56)
T PF02238_consen 22 GGYMDDILYRVTMPLTVAGTSYCLYGL 48 (56)
T ss_dssp T-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccchHHHHHHHHHHHHHHHHHHHH
Confidence 334566666666666666666666543
No 267
>cd07685 F-BAR_Fes The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), is a cytoplasmic (or nonreceptor) tyrosine kinase whose gene was first isolated from tumor-causing retroviruses. It is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells, and plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. Fes kinase has also been implicated as a tumor suppressor in colorectal cancer. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane def
Probab=31.62 E-value=2.9e+02 Score=22.64 Aligned_cols=17 Identities=18% Similarity=0.407 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHhh
Q 047357 7 GYERQYCELSTNLSRKC 23 (219)
Q Consensus 7 ~ye~e~~~~~~~i~~~l 23 (219)
..+.||...+..+....
T Consensus 33 K~d~eya~~L~~~~~q~ 49 (237)
T cd07685 33 KSDREYSGMLHHMSAQV 49 (237)
T ss_pred HhhHHHHHHHHHHHHhh
Confidence 34566666666666554
No 268
>PRK14065 exodeoxyribonuclease VII small subunit; Provisional
Probab=31.54 E-value=1.7e+02 Score=19.89 Aligned_cols=50 Identities=16% Similarity=0.060 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhhhhhcCC-CChhHHHHHHHHHHchHHHHHHHHHHHHHHHh
Q 047357 12 YCELSTNLSRKCSSASLL-PDGDQKKEKYSEIQSGLDDADALIRKMDLEAR 61 (219)
Q Consensus 12 ~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~~~~~~l~~a~~~~~~m~~E~~ 61 (219)
|..-++.+...|..+..- .+-.+--.+..+.-..|..|+..+..-.+++.
T Consensus 27 FE~klerakeiLe~LndpeisL~eSvkLYkeG~~lL~eAqk~LE~AkLe~~ 77 (86)
T PRK14065 27 FEEHVHSLEQAIDRLNDPNLSLKDGMDLYKTAMQELFLAQKLLENAYLEYE 77 (86)
T ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444321 02233344444444455555555544444443
No 269
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=31.53 E-value=1.6e+02 Score=19.71 Aligned_cols=25 Identities=16% Similarity=0.336 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 047357 69 AMLLAKLREYKSDLNKLKREFKRVS 93 (219)
Q Consensus 69 ~~~~~k~~~~~~~l~~l~~~~~~~~ 93 (219)
..|..|+...+.++..+...+.+++
T Consensus 60 ~~y~~KL~~ikkrm~~l~~~l~~lk 84 (92)
T PF14712_consen 60 DPYVKKLVNIKKRMSNLHERLQKLK 84 (92)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3488999999988888888887765
No 270
>PF15339 Afaf: Acrosome formation-associated factor
Probab=31.52 E-value=1.5e+02 Score=23.11 Aligned_cols=32 Identities=13% Similarity=0.267 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 047357 186 MSRRMTRNKWIVGSIIVALVIAIIFILFYKLS 217 (219)
Q Consensus 186 m~rr~~~dk~Il~~ii~~l~~~i~~vi~~k~~ 217 (219)
+.-+.+.---++.+++++.++++|+...||+.
T Consensus 128 ~KlkLmLGIsLmTl~lfv~Ll~~c~atlyklk 159 (200)
T PF15339_consen 128 LKLKLMLGISLMTLFLFVILLAFCSATLYKLK 159 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555555555666666666653
No 271
>PF02936 COX4: Cytochrome c oxidase subunit IV; InterPro: IPR004203 Cytochrome c oxidase, a 13 sub-unit complex (1.9.3.1 from EC) is the terminal oxidase in the mitochondrial electron transport chain. This family is composed of cytochrome c oxidase subunit IV. The Dictyostelium discoideum (Slime mould) member of this family is called COX VI. The Saccharomyces cerevisiae protein YGX6_YEAST appears to be the yeast COX IV subunit.; GO: 0004129 cytochrome-c oxidase activity; PDB: 3ABK_Q 3AG1_Q 3ASN_Q 1OCZ_D 2EIN_Q 2OCC_D 2YBB_O 3AG3_D 1OCO_Q 1V55_Q ....
Probab=31.52 E-value=73 Score=23.85 Aligned_cols=24 Identities=8% Similarity=0.411 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 047357 192 RNKWIVGSIIVALVIAIIFILFYK 215 (219)
Q Consensus 192 ~dk~Il~~ii~~l~~~i~~vi~~k 215 (219)
.-+.|+.++++++.+..+++++.+
T Consensus 73 ewk~v~~~~~~~i~~s~~l~~~~r 96 (142)
T PF02936_consen 73 EWKKVFGGVFIFIGFSVLLFIWQR 96 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667666666666666666655
No 272
>PRK11546 zraP zinc resistance protein; Provisional
Probab=31.49 E-value=2.3e+02 Score=21.34 Aligned_cols=22 Identities=9% Similarity=0.282 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 047357 69 AMLLAKLREYKSDLNKLKREFK 90 (219)
Q Consensus 69 ~~~~~k~~~~~~~l~~l~~~~~ 90 (219)
.++.+++...+..+.+..-+|+
T Consensus 92 ~aL~kEI~~Lr~kL~e~r~~~~ 113 (143)
T PRK11546 92 NAVAKEMENLRQSLDELRVKRD 113 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666665555443
No 273
>PRK06665 flgK flagellar hook-associated protein FlgK; Validated
Probab=31.48 E-value=4.5e+02 Score=24.82 Aligned_cols=59 Identities=7% Similarity=0.101 Sum_probs=29.7
Q ss_pred hhHHHHHHHHHHchHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047357 32 GDQKKEKYSEIQSGLDDADALIRKMDLEARSLQPNVKAMLLAKLREYKSDLNKLKREFKR 91 (219)
Q Consensus 32 ~~~~~~~~~~~~~~l~~a~~~~~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~~l~~~~~~ 91 (219)
...|...+..++.....+.....+++..-....... .....++-.+-+++.+|-+++..
T Consensus 138 ~a~R~~vl~~A~~La~~~n~~~~~L~~~~~~~~~~i-~~~V~~iN~ll~qIa~LN~qI~~ 196 (627)
T PRK06665 138 LAERQVVLERAQSLGERIHDRYRSLERIRDMANDEI-EITVEEINNILRNIADLNEQIVK 196 (627)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666677766666665555555444322222111 23344444555555555555544
No 274
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=31.17 E-value=74 Score=23.94 Aligned_cols=10 Identities=20% Similarity=0.235 Sum_probs=4.7
Q ss_pred HHHHHHHHHH
Q 047357 205 VIAIIFILFY 214 (219)
Q Consensus 205 ~~~i~~vi~~ 214 (219)
+++||+++|.
T Consensus 129 ll~i~~giy~ 138 (145)
T PF10661_consen 129 LLAICGGIYV 138 (145)
T ss_pred HHHHHHHHHH
Confidence 3444445554
No 275
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=31.09 E-value=2.7e+02 Score=22.17 Aligned_cols=57 Identities=14% Similarity=0.219 Sum_probs=40.4
Q ss_pred HHHHHHHchHHHHHHHHHHHHHHHhc----C-ChhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 047357 37 EKYSEIQSGLDDADALIRKMDLEARS----L-QPNVKAMLLAKLREYKSDLNKLKREFKRVS 93 (219)
Q Consensus 37 ~~~~~~~~~l~~a~~~~~~m~~E~~~----~-~~~~r~~~~~k~~~~~~~l~~l~~~~~~~~ 93 (219)
.....+...|...+++-+.+-.|+.. . +|+-|..-..+++.-+..+.+|-+.++++.
T Consensus 78 ~~A~~V~~RI~~vE~Va~ALF~EWe~EL~~Y~~~sLR~~S~~kL~~tr~~Y~~L~~aM~~Ae 139 (201)
T PF11172_consen 78 DAAEEVSDRIDAVEDVADALFDEWEQELDQYSNASLRRASEQKLAETRRRYAQLIKAMRRAE 139 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666677766666666666553 2 356788888888888888988888887765
No 276
>PRK07739 flgK flagellar hook-associated protein FlgK; Validated
Probab=30.98 E-value=4.2e+02 Score=24.24 Aligned_cols=73 Identities=10% Similarity=0.145 Sum_probs=37.4
Q ss_pred HHHHhhhhhcCCC-ChhHHHHHHHHHHchHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047357 18 NLSRKCSSASLLP-DGDQKKEKYSEIQSGLDDADALIRKMDLEARSLQPNVKAMLLAKLREYKSDLNKLKREFKR 91 (219)
Q Consensus 18 ~i~~~l~~~~~~~-~~~~~~~~~~~~~~~l~~a~~~~~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~~l~~~~~~ 91 (219)
++-..+..+...| ++..|...+..++...........+++..-....... .....++-.+-+++.+|-+++..
T Consensus 123 ~ff~a~~~la~~P~~~~~r~~vl~~a~~La~~~n~~~~~L~~~~~~~~~~i-~~~V~~iN~ll~~Ia~LN~~I~~ 196 (507)
T PRK07739 123 QFWNSLQELSKNPENLGARSVVRQRAQALAETFNYLSQSLTDIQNDLKSEI-DVTVKEINSLASQISDLNKQIAK 196 (507)
T ss_pred HHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444433 3466677777777776666665555554333332221 23444555555555556555543
No 277
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=30.91 E-value=42 Score=28.23 Aligned_cols=7 Identities=29% Similarity=0.747 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 047357 208 IIFILFY 214 (219)
Q Consensus 208 i~~vi~~ 214 (219)
|++.||+
T Consensus 276 iiLYiWl 282 (295)
T TIGR01478 276 IILYIWL 282 (295)
T ss_pred HHHHHHH
Confidence 3334444
No 278
>PF15012 DUF4519: Domain of unknown function (DUF4519)
Probab=30.71 E-value=18 Score=22.54 Aligned_cols=10 Identities=20% Similarity=0.627 Sum_probs=4.3
Q ss_pred HHHHHHHHHh
Q 047357 206 IAIIFILFYK 215 (219)
Q Consensus 206 ~~i~~vi~~k 215 (219)
++|++++|++
T Consensus 43 ~~Ivv~vy~k 52 (56)
T PF15012_consen 43 LFIVVFVYLK 52 (56)
T ss_pred HHHhheeEEe
Confidence 3344444443
No 279
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=30.54 E-value=17 Score=30.74 Aligned_cols=14 Identities=21% Similarity=0.439 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhcc
Q 047357 205 VIAIIFILFYKLSH 218 (219)
Q Consensus 205 ~~~i~~vi~~k~~~ 218 (219)
++++++.++|+..|
T Consensus 161 IA~iIa~icyrrkR 174 (290)
T PF05454_consen 161 IAGIIACICYRRKR 174 (290)
T ss_dssp --------------
T ss_pred HHHHHHHHhhhhhh
Confidence 33444445555444
No 280
>TIGR00255 conserved hypothetical protein TIGR00255. The apparent ortholog from Aquifex aeolicus as reported is split into two consecutive reading frames.
Probab=30.36 E-value=3.4e+02 Score=22.97 Aligned_cols=63 Identities=13% Similarity=0.085 Sum_probs=29.5
Q ss_pred HHHHHHHhhhhhcCCCChhHHHHHHHHHHchHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 047357 15 LSTNLSRKCSSASLLPDGDQKKEKYSEIQSGLDDADALIRKMDLEARSLQPNVKAMLLAKLREY 78 (219)
Q Consensus 15 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~m~~E~~~~~~~~r~~~~~k~~~~ 78 (219)
+...+...|..+... -..+-..+...+...+..++..+..++..+-..+...+..+..++..+
T Consensus 133 l~~al~~AL~~l~~m-R~~EG~~L~~dl~~rl~~i~~~v~~i~~~~p~~~~~~~~rL~~rl~el 195 (291)
T TIGR00255 133 ILGALEEALLDFINM-REFEGENLKSDIVQRLDLIEREVKKVRSAMPDILQWQRERLKARIEDL 195 (291)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHH
Confidence 344444444444332 223333445556666666666666555443333344444444444444
No 281
>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]
Probab=30.24 E-value=53 Score=30.90 Aligned_cols=20 Identities=20% Similarity=0.393 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 047357 195 WIVGSIIVALVIAIIFILFY 214 (219)
Q Consensus 195 ~Il~~ii~~l~~~i~~vi~~ 214 (219)
+|+++||++++++|.+++|-
T Consensus 395 ~~f~~if~iva~ii~~~L~R 414 (807)
T KOG1094|consen 395 IIFVAIFLIVALIIALMLWR 414 (807)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555543
No 282
>PF02532 PsbI: Photosystem II reaction centre I protein (PSII 4.8 kDa protein); InterPro: IPR003686 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbI, which is tightly associated with the D1/D2 heterodimer in PSII. The function of PsbI is unknown, but it may be involved in the assembly, dimerisation or stabilisation of PSII dimers [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_i 3ARC_I 3A0B_i 3BZ2_I 3PRQ_I 3KZI_I 3PRR_I 2AXT_i 4FBY_I 1S5L_i ....
Probab=30.03 E-value=1.1e+02 Score=17.16 Aligned_cols=13 Identities=15% Similarity=0.235 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHH
Q 047357 192 RNKWIVGSIIVAL 204 (219)
Q Consensus 192 ~dk~Il~~ii~~l 204 (219)
+=|+..|++++++
T Consensus 3 ~LK~~Vy~vV~ff 15 (36)
T PF02532_consen 3 TLKIFVYTVVIFF 15 (36)
T ss_dssp HHHHHHHHHHHHH
T ss_pred EEEEeehhhHHHH
Confidence 3466666655554
No 283
>PTZ00087 thrombosponding-related protein; Provisional
Probab=29.94 E-value=43 Score=27.93 Aligned_cols=19 Identities=26% Similarity=0.737 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 047357 197 VGSIIVALVIAIIFILFYK 215 (219)
Q Consensus 197 l~~ii~~l~~~i~~vi~~k 215 (219)
+-+|+++|+++|++-+|||
T Consensus 303 ~piv~vi~v~~ily~ify~ 321 (340)
T PTZ00087 303 LPIVLIICVMGILYHIFYK 321 (340)
T ss_pred hhHHHHHHHHHHHHHHhhh
Confidence 3456666766666666654
No 284
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=29.91 E-value=5.7e+02 Score=25.50 Aligned_cols=172 Identities=18% Similarity=0.236 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcCCCCh--hHHHHHHHHHHchHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHH
Q 047357 5 FEGYERQYCELSTNLSRKCSSASLLPDG--DQKKEKYSEIQSGLDDADALIRKMDLEARSLQPNVKAMLLAKLREYKSDL 82 (219)
Q Consensus 5 f~~ye~e~~~~~~~i~~~l~~~~~~~~~--~~~~~~~~~~~~~l~~a~~~~~~m~~E~~~~~~~~r~~~~~k~~~~~~~l 82 (219)
++.++.++..+..++...-..++.. .. .+....+..++..+..+...+..+..++..+.... .....++......+
T Consensus 234 l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~i~~~~~~i-~~~~~~~~~~~~~~ 311 (1179)
T TIGR02168 234 LEELREELEELQEELKEAEEELEEL-TAELQELEEKLEELRLEVSELEEEIEELQKELYALANEI-SRLEQQKQILRERL 311 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHH
Q ss_pred HHHHHHHHhhcchh--hHhhhccCCCCCCCCCCHHHHHHHHhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 047357 83 NKLKREFKRVSSSD--AHEELLESGKADPNVVSGEQRERLAMSVERINQSGERIRESRRVMLETEELGISIVEDLNQQRE 160 (219)
Q Consensus 83 ~~l~~~~~~~~~~~--~r~~L~~~~~~~~~~~~~~~r~~l~~~~~~l~~~~~~L~~s~~~~~ete~~g~~i~~~L~~Qre 160 (219)
..++.....+.... ...++ ......+-.....+......+........+.+..-...-..+...+.
T Consensus 312 ~~l~~~~~~l~~~~~~~~~~~------------~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 379 (1179)
T TIGR02168 312 ANLERQLEELEAQLEELESKL------------DELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEE 379 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhhhhhhhhHhHHHHHHHHHHHHHHH
Q 047357 161 TLLNSRNKLHGVDDAISKSKKVLSSMSRRM 190 (219)
Q Consensus 161 ~L~~~~~~~~~i~~~l~~s~~~l~~m~rr~ 190 (219)
.+.............+.....-+.....+.
T Consensus 380 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 409 (1179)
T TIGR02168 380 QLETLRSKVAQLELQIASLNNEIERLEARL 409 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 285
>COG4839 FtsL Protein required for the initiation of cell division [Cell division and chromosome partitioning]
Probab=29.83 E-value=1.6e+02 Score=21.41 Aligned_cols=22 Identities=23% Similarity=0.282 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 047357 193 NKWIVGSIIVALVIAIIFILFY 214 (219)
Q Consensus 193 dk~Il~~ii~~l~~~i~~vi~~ 214 (219)
.|++...+++..+++.++++|.
T Consensus 37 EKvly~~~~va~L~vai~ii~~ 58 (120)
T COG4839 37 EKVLYTTLAVAALVVAISIISV 58 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6776665555544555555554
No 286
>PRK07521 flgK flagellar hook-associated protein FlgK; Validated
Probab=29.71 E-value=4.3e+02 Score=23.98 Aligned_cols=69 Identities=7% Similarity=0.069 Sum_probs=34.9
Q ss_pred hhhhhcCCC-ChhHHHHHHHHHHchHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047357 22 KCSSASLLP-DGDQKKEKYSEIQSGLDDADALIRKMDLEARSLQPNVKAMLLAKLREYKSDLNKLKREFKR 91 (219)
Q Consensus 22 ~l~~~~~~~-~~~~~~~~~~~~~~~l~~a~~~~~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~~l~~~~~~ 91 (219)
.+..+...| +...|...+..++...........+++..-....... .....++-.+-+.+.+|..++..
T Consensus 110 a~~~la~~P~~~~~R~~vl~~a~~L~~~~n~~~~~L~~~~~~~~~~i-~~~V~~iN~l~~~Ia~LN~~I~~ 179 (483)
T PRK07521 110 ALQTAASSPDNTTLAQAAVDAAQDLANSLNDASDAVQSARADADAEI-ADSVDTLNDLLAQFEDANNAVVS 179 (483)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333 3466777777777777666666665554333322211 23344444444555555555543
No 287
>PF06084 Cytomega_TRL10: Cytomegalovirus TRL10 protein; InterPro: IPR009284 This family consists of several Cytomegalovirus TRL10 proteins. TRL10 represents a structural component of the virus particle and like the other HCMV envelope glycoproteins, is present in a disulphide-linked complex [].
Probab=29.71 E-value=23 Score=25.42 Aligned_cols=8 Identities=25% Similarity=0.883 Sum_probs=4.3
Q ss_pred HHHHHHHH
Q 047357 207 AIIFILFY 214 (219)
Q Consensus 207 ~i~~vi~~ 214 (219)
.|+||||.
T Consensus 74 viffviy~ 81 (150)
T PF06084_consen 74 VIFFVIYS 81 (150)
T ss_pred HHhheeEe
Confidence 35556654
No 288
>PTZ00370 STEVOR; Provisional
Probab=29.35 E-value=46 Score=28.03 Aligned_cols=7 Identities=29% Similarity=0.747 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 047357 208 IIFILFY 214 (219)
Q Consensus 208 i~~vi~~ 214 (219)
|++.||+
T Consensus 272 iilYiwl 278 (296)
T PTZ00370 272 IILYIWL 278 (296)
T ss_pred HHHHHHH
Confidence 3334443
No 289
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=29.33 E-value=84 Score=19.68 Aligned_cols=8 Identities=38% Similarity=0.700 Sum_probs=3.0
Q ss_pred HHHHHHHh
Q 047357 208 IIFILFYK 215 (219)
Q Consensus 208 i~~vi~~k 215 (219)
+.|-++.|
T Consensus 21 ~~Ftl~IR 28 (58)
T PF13314_consen 21 ASFTLFIR 28 (58)
T ss_pred HHHHHHHH
Confidence 33333333
No 290
>PF00505 HMG_box: HMG (high mobility group) box; InterPro: IPR000910 High mobility group (HMG or HMGB) proteins are a family of relatively low molecular weight non-histone components in chromatin. HMG1 (also called HMG-T in fish) and HMG2 are two highly related proteins that bind single-stranded DNA preferentially and unwind double-stranded DNA. Although they have no sequence specificity, they have a high affinity for bent or distorted DNA, and bend linear DNA. HMG1 and HMG2 contain two DNA-binding HMG-box domains (A and B) that show structural and functional differences, and have a long acidic C-terminal domain rich in aspartic and glutamic acid residues. The acidic tail modulates the affinity of the tandem HMG boxes in HMG1 and 2 for a variety of DNA targets. HMG1 and 2 appear to play important architectural roles in the assembly of nucleoprotein complexes in a variety of biological processes, for example V(D)J recombination, the initiation of transcription, and DNA repair []. The profile in this entry describing the HMG-domains is much more general than the signature. In addition to the HMG1 and HMG2 proteins, HMG-domains occur in single or multiple copies in the following protein classes; the SOX family of transcription factors; SRY sex determining region Y protein and related proteins []; LEF1 lymphoid enhancer binding factor 1 []; SSRP recombination signal recognition protein; MTF1 mitochondrial transcription factor 1; UBF1/2 nucleolar transcription factors; Abf2 yeast ARS-binding factor []; and Saccharomyces cerevisiae transcription factors Ixr1, Rox1, Nhp6a, Nhp6b and Spp41.; GO: 0003677 DNA binding; PDB: 1I11_A 1J3C_A 1J3D_A 1WZ6_A 1WGF_A 2D7L_A 1GT0_D 3U2B_C 2CRJ_A 2CS1_A ....
Probab=29.29 E-value=1.4e+02 Score=18.37 Aligned_cols=39 Identities=15% Similarity=0.070 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHH
Q 047357 49 ADALIRKMDLEARSLQPNVKAMLLAKLREYKSDLNKLKR 87 (219)
Q Consensus 49 a~~~~~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~~l~~ 87 (219)
..++.+.+....+++|+..|..|.......+..+..--.
T Consensus 28 ~~~i~~~~~~~W~~l~~~eK~~y~~~a~~~~~~y~~~~~ 66 (69)
T PF00505_consen 28 NKEISKILAQMWKNLSEEEKAPYKEEAEEEKERYEKEMP 66 (69)
T ss_dssp HHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456666678899999998888887776666555433
No 291
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=29.27 E-value=2.9e+02 Score=21.84 Aligned_cols=26 Identities=12% Similarity=0.280 Sum_probs=12.3
Q ss_pred HHHHHchHHHHHHHHHHHHHHHhcCC
Q 047357 39 YSEIQSGLDDADALIRKMDLEARSLQ 64 (219)
Q Consensus 39 ~~~~~~~l~~a~~~~~~m~~E~~~~~ 64 (219)
+..++..+.+.+.-+..|+..+....
T Consensus 127 L~~~~~~l~~~~~ki~~Lek~leL~~ 152 (194)
T PF15619_consen 127 LSQLEQKLQEKEKKIQELEKQLELEN 152 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444445555555555544444433
No 292
>PF14071 YlbD_coat: Putative coat protein
Probab=29.21 E-value=2.2e+02 Score=20.87 Aligned_cols=30 Identities=10% Similarity=0.211 Sum_probs=12.2
Q ss_pred HhcCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 047357 60 ARSLQPNVKAMLLAKLREYKSDLNKLKREF 89 (219)
Q Consensus 60 ~~~~~~~~r~~~~~k~~~~~~~l~~l~~~~ 89 (219)
+..+.++.-+.+...+.+.-.-+..+-..|
T Consensus 74 vKkmD~nq~q~hl~~~sqai~~vQ~~l~qF 103 (124)
T PF14071_consen 74 VKKMDVNQMQKHLNNVSQAIGSVQQVLSQF 103 (124)
T ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444433344444444333344443444
No 293
>cd00922 Cyt_c_Oxidase_IV Cytochrome c oxidase subunit IV. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit IV is the largest of the nuclear-encoded subunits. It binds ATP at the matrix side, leading to an allosteric inhibition of enzyme activity at high intramitochondrial ATP/ADP ratios. In mammals, subunit IV has a lung-specific isoform and a ubiquitously expressed isoform.
Probab=29.18 E-value=84 Score=23.34 Aligned_cols=22 Identities=14% Similarity=0.258 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 047357 194 KWIVGSIIVALVIAIIFILFYK 215 (219)
Q Consensus 194 k~Il~~ii~~l~~~i~~vi~~k 215 (219)
|.++.++++++.+.++++++.+
T Consensus 75 k~v~~~~~~~i~~s~~~~~~~r 96 (136)
T cd00922 75 KTVFGGVLAFIGITGVIFGLQR 96 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555455444
No 294
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=28.87 E-value=1.9e+02 Score=19.58 Aligned_cols=53 Identities=21% Similarity=0.166 Sum_probs=24.0
Q ss_pred HHhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhh
Q 047357 120 LAMSVERINQSGERIRESRRVMLETEELGISIVEDLNQQRETLLNSRNKLHGV 172 (219)
Q Consensus 120 l~~~~~~l~~~~~~L~~s~~~~~ete~~g~~i~~~L~~Qre~L~~~~~~~~~i 172 (219)
|.+....+..+-.+-..+...+.+.-+.=..+-.++..+...|..+.+-+..+
T Consensus 10 L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l 62 (92)
T PF03908_consen 10 LRRTRQMMAQEVERSELTLQTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKL 62 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334333333333333333333344444555555666666555555443
No 295
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=28.86 E-value=6.2e+02 Score=25.56 Aligned_cols=181 Identities=18% Similarity=0.226 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcCCCCh--hHHHHHHHHHHchHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHH
Q 047357 6 EGYERQYCELSTNLSRKCSSASLLPDG--DQKKEKYSEIQSGLDDADALIRKMDLEARSLQPNVKAMLLAKLREYKSDLN 83 (219)
Q Consensus 6 ~~ye~e~~~~~~~i~~~l~~~~~~~~~--~~~~~~~~~~~~~l~~a~~~~~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~ 83 (219)
..|+.++..+.+.+...=..+... +. ++-..-++.++.........+..+..|++.... .+......+.-....+.
T Consensus 674 ~~~~~~~~~l~~~L~~~r~~i~~~-~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~-e~~~v~~s~~~k~~~Le 751 (1200)
T KOG0964|consen 674 NESRSELKELQESLDEVRNEIEDI-DQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKG-EKSRVQESLEPKGKELE 751 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHhhHHHHHHH
Q ss_pred HHHHHHHhhcchh-hHhhhccCCCCCCCCCCHHHHHHHHhhHHHhhhhhHHHHHHHHHHHHHH----HHHHHHHHHHHHh
Q 047357 84 KLKREFKRVSSSD-AHEELLESGKADPNVVSGEQRERLAMSVERINQSGERIRESRRVMLETE----ELGISIVEDLNQQ 158 (219)
Q Consensus 84 ~l~~~~~~~~~~~-~r~~L~~~~~~~~~~~~~~~r~~l~~~~~~l~~~~~~L~~s~~~~~ete----~~g~~i~~~L~~Q 158 (219)
.++..+..+.... .-+..+|..-.+ ..+....+++-..+..++.-...+....+-..+.+ .+-+....+|..+
T Consensus 752 ~i~~~l~~~~~~~~~~e~el~sel~s--qLt~ee~e~l~kLn~eI~~l~~kl~~~~~er~~~~~rk~~le~~l~~kL~~r 829 (1200)
T KOG0964|consen 752 EIKTSLHKLESQSNYFESELGSELFS--QLTPEELERLSKLNKEINKLSVKLRALREERIDIETRKTALEANLNTKLYKR 829 (1200)
T ss_pred HHHHHHHHHHHHHHhHHHHHhHHHHh--hcCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q ss_pred hHHHHHhhhhhhhhh--HhHHHHHHHHHHHHHHH
Q 047357 159 RETLLNSRNKLHGVD--DAISKSKKVLSSMSRRM 190 (219)
Q Consensus 159 re~L~~~~~~~~~i~--~~l~~s~~~l~~m~rr~ 190 (219)
...|..-.+.+.+.. +.+...+.-+.....++
T Consensus 830 ~~~l~~ei~~~~d~~~~~el~~~~~el~~~~~~~ 863 (1200)
T KOG0964|consen 830 VNELEQEIGDLNDSSRRSELELEKSELESEEKRV 863 (1200)
T ss_pred hhHHHHHhhhcccccchhhhhHHHHHHHHHHHHH
No 296
>PF04834 Adeno_E3_14_5: Early E3 14.5 kDa protein; InterPro: IPR008131 The E3B 14.5 kDa was first identified in human adenovirus type 5. It is an integral membrane protein oriented with its C terminus in the cytoplasm. It functions to down-regulate the epidermal growth factor receptor and prevent tumour necrosis factor cytolysis. It achieves this through the interaction with E3 10.4 kDa protein [, ]. ; GO: 0009966 regulation of signal transduction, 0016021 integral to membrane
Probab=28.80 E-value=69 Score=22.35 Aligned_cols=13 Identities=0% Similarity=-0.023 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHhh
Q 047357 204 LVIAIIFILFYKL 216 (219)
Q Consensus 204 l~~~i~~vi~~k~ 216 (219)
+..++.+.||.+|
T Consensus 35 ~~t~~~l~iYp~f 47 (97)
T PF04834_consen 35 CSTFFSLAIYPCF 47 (97)
T ss_pred HHHHHHHhhhhee
Confidence 3345556666654
No 297
>PF05814 DUF843: Baculovirus protein of unknown function (DUF843); InterPro: IPR008561 This family consists of several unidentified baculovirus proteins of around 85 residues long with no known function.
Probab=28.77 E-value=79 Score=21.37 Aligned_cols=23 Identities=9% Similarity=0.290 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 047357 191 TRNKWIVGSIIVALVIAIIFILF 213 (219)
Q Consensus 191 ~~dk~Il~~ii~~l~~~i~~vi~ 213 (219)
...-+|+++.++++++++++=+|
T Consensus 22 ~~s~li~~~LilfviF~~~L~~y 44 (83)
T PF05814_consen 22 GFSELIITLLILFVIFFCVLQVY 44 (83)
T ss_pred chHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555544444444343
No 298
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=28.61 E-value=1.6e+02 Score=18.57 Aligned_cols=25 Identities=32% Similarity=0.485 Sum_probs=20.4
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHH
Q 047357 64 QPNVKAMLLAKLREYKSDLNKLKRE 88 (219)
Q Consensus 64 ~~~~r~~~~~k~~~~~~~l~~l~~~ 88 (219)
++..+..+..++.+|....+.++..
T Consensus 44 ~~~~~~~l~~k~~~yl~RAE~lk~~ 68 (69)
T PF04212_consen 44 NPERRQALRQKMKEYLERAEKLKEY 68 (69)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4566788999999999998888764
No 299
>PF11057 Cortexin: Cortexin of kidney; InterPro: IPR020066 Cortexin is a neuron-specific, 82-residue membrane protein which is found especially in vertebrate brain cortex tissue. It may mediate extracellular or intracellular signalling of cortical neurons during forebrain development. Cortexin is present at significant levels in the foetal brain, suggesting that it may be important to neurons of both the developing and adult cerebral cortex. Cortexin has a conserved single membrane-spanning region in the middle of each sequence []. In humans, there is selective expression of Cortexin 3 (CTXN3) in the kidney as well as the brain []. This entry contains Cortexins 1, 2 and 3.; GO: 0031224 intrinsic to membrane
Probab=28.54 E-value=76 Score=21.02 Aligned_cols=17 Identities=6% Similarity=0.497 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHhh
Q 047357 200 IIVALVIAIIFILFYKL 216 (219)
Q Consensus 200 ii~~l~~~i~~vi~~k~ 216 (219)
+++++++++.+|-.+|+
T Consensus 35 ~~L~~fL~~liVRCfrI 51 (81)
T PF11057_consen 35 GLLCLFLGLLIVRCFRI 51 (81)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444545554
No 300
>PRK12659 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=28.52 E-value=89 Score=22.53 Aligned_cols=25 Identities=20% Similarity=0.146 Sum_probs=16.2
Q ss_pred HHH-HHHHHHHHHHHHHHHHHhhccC
Q 047357 195 WIV-GSIIVALVIAIIFILFYKLSHH 219 (219)
Q Consensus 195 ~Il-~~ii~~l~~~i~~vi~~k~~~~ 219 (219)
+++ .++|.+.+.+..++++++.+++
T Consensus 76 lvLTaIVIg~Av~a~~lvl~~r~~~~ 101 (117)
T PRK12659 76 LILTAIVIGFGVQAFAIVLIKRAYQV 101 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 444 4566667777777777777653
No 301
>COG0342 SecD Preprotein translocase subunit SecD [Intracellular trafficking and secretion]
Probab=28.47 E-value=62 Score=29.66 Aligned_cols=26 Identities=19% Similarity=0.544 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 047357 192 RNKWIVGSIIVALVIAIIFILFYKLS 217 (219)
Q Consensus 192 ~dk~Il~~ii~~l~~~i~~vi~~k~~ 217 (219)
...-+..+++++++++++.++||+++
T Consensus 342 i~~gi~Agl~g~~~V~vfm~~~Yr~~ 367 (506)
T COG0342 342 IKAGLIAGLIGLALVAVFMLLYYRLA 367 (506)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35566777888888888888999853
No 302
>PRK07191 flgK flagellar hook-associated protein FlgK; Validated
Probab=28.22 E-value=4.4e+02 Score=23.68 Aligned_cols=76 Identities=8% Similarity=0.089 Sum_probs=38.2
Q ss_pred HHHHHHhhhhhcCCC-ChhHHHHHHHHHHchHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047357 16 STNLSRKCSSASLLP-DGDQKKEKYSEIQSGLDDADALIRKMDLEARSLQPNVKAMLLAKLREYKSDLNKLKREFKRV 92 (219)
Q Consensus 16 ~~~i~~~l~~~~~~~-~~~~~~~~~~~~~~~l~~a~~~~~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~~l~~~~~~~ 92 (219)
+.++-..+..+...| +...|...+..++.....+...-.+++..-..+.... .....++..+-+++.+|-.++...
T Consensus 109 l~~ff~a~~~la~~P~~~~~r~~vl~~a~~la~~~n~~~~~l~~~~~~~~~~i-~~~V~~iN~ll~~Ia~LN~~I~~~ 185 (456)
T PRK07191 109 LNNFFSALSAATQLPDSPPMRQQVIESANAMALRFNNVNNFIVQQKKSIGQQR-DATVKQINSLTRSIADYNQKILKN 185 (456)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333344444444433 3466777777777776666665555543322222211 233444555555555555555443
No 303
>PF13997 YqjK: YqjK-like protein
Probab=28.00 E-value=1.8e+02 Score=19.03 Aligned_cols=38 Identities=18% Similarity=0.252 Sum_probs=31.1
Q ss_pred HHHHHHhhHHHHHhhhhhhhhhHhHHHHHHHHHHHHHH
Q 047357 152 VEDLNQQRETLLNSRNKLHGVDDAISKSKKVLSSMSRR 189 (219)
Q Consensus 152 ~~~L~~Qre~L~~~~~~~~~i~~~l~~s~~~l~~m~rr 189 (219)
+.+...||..|........++.+-++++-..+..+.+.
T Consensus 2 l~qi~qQR~~La~~~~~w~~~ta~~Dr~w~~l~~lr~~ 39 (73)
T PF13997_consen 2 LRQIQQQRLDLAANAEPWLEATAPYDRGWQTLRSLRRH 39 (73)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHh
Confidence 35678899999999999999999999998887755443
No 304
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=27.91 E-value=1.6e+02 Score=25.37 Aligned_cols=29 Identities=7% Similarity=0.203 Sum_probs=24.0
Q ss_pred hhHHHHHHHHHHchHHHHHHHHHHHHHHH
Q 047357 32 GDQKKEKYSEIQSGLDDADALIRKMDLEA 60 (219)
Q Consensus 32 ~~~~~~~~~~~~~~l~~a~~~~~~m~~E~ 60 (219)
+.+..+.+.+++..+.+++..+..||..+
T Consensus 63 ~~e~~~~i~~L~~~Ik~r~~~l~DmEa~L 91 (330)
T PF07851_consen 63 SAEERELIEKLEEDIKERRCQLFDMEAFL 91 (330)
T ss_pred ChhHHHHHHHHHHHHHHHHhhHHHHHhhC
Confidence 45667889999999999999999999543
No 305
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=27.82 E-value=5e+02 Score=24.12 Aligned_cols=13 Identities=15% Similarity=0.378 Sum_probs=6.1
Q ss_pred hhhhhHhHHHHHH
Q 047357 169 LHGVDDAISKSKK 181 (219)
Q Consensus 169 ~~~i~~~l~~s~~ 181 (219)
...+...+..|..
T Consensus 516 ~~~V~~~f~~Ae~ 528 (569)
T PRK04778 516 NEEVAEALNEAER 528 (569)
T ss_pred CHHHHHHHHHHHH
Confidence 4444455555543
No 306
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=27.70 E-value=3.9e+02 Score=22.81 Aligned_cols=12 Identities=17% Similarity=0.434 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q 047357 78 YKSDLNKLKREF 89 (219)
Q Consensus 78 ~~~~l~~l~~~~ 89 (219)
.+..++++++++
T Consensus 86 q~~~i~~l~~~i 97 (301)
T PF06120_consen 86 QKRAIEDLQKKI 97 (301)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 307
>PHA03395 p10 fibrous body protein; Provisional
Probab=27.53 E-value=2.1e+02 Score=19.59 Aligned_cols=27 Identities=22% Similarity=0.341 Sum_probs=21.7
Q ss_pred HHHHHHHHhhHHHHHhhhhhhhhhHhH
Q 047357 150 SIVEDLNQQRETLLNSRNKLHGVDDAI 176 (219)
Q Consensus 150 ~i~~~L~~Qre~L~~~~~~~~~i~~~l 176 (219)
++.+.|..|..+|..+..++..|.+-|
T Consensus 39 ~l~~kLdaq~~~Ltti~tkv~~I~diL 65 (87)
T PHA03395 39 EINEKLDAQSASLDTISSAVDNITDIL 65 (87)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHcc
Confidence 455678999999999988888887654
No 308
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=27.53 E-value=5.3e+02 Score=24.31 Aligned_cols=155 Identities=21% Similarity=0.320 Sum_probs=0.0
Q ss_pred CchhHHHHHHHHHHHHHHHHHhhhhhcCCCChhHHHHHHHHHHchHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH-
Q 047357 1 MSEVFEGYERQYCELSTNLSRKCSSASLLPDGDQKKEKYSEIQSGLDDADALIRKMDLEARSLQPNVKAMLLAKLREYK- 79 (219)
Q Consensus 1 Ms~~f~~ye~e~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~m~~E~~~~~~~~r~~~~~k~~~~~- 79 (219)
|.+.-+..+.+...+.+++.-.=..+.-+ .+...-+.+++..++....-+..|..++.. .|..+..+++.++
T Consensus 361 ~~~e~~~~~~~~~~le~~~~l~~k~~~lL---~d~e~ni~kL~~~v~~s~~rl~~L~~qWe~----~R~pL~~e~r~lk~ 433 (594)
T PF05667_consen 361 LEEELEEKEAENEELEEELKLKKKTVELL---PDAEENIAKLQALVEASEQRLVELAQQWEK----HRAPLIEEYRRLKE 433 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCcHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhHHHHHHHHHHH
Q ss_pred -------------HHHHHHHHHHHhhcchh-hHhhhccCCCCCCCCCCHHHHHHHHhhHHHhhhhhHHHHHHHHHHHHHH
Q 047357 80 -------------SDLNKLKREFKRVSSSD-AHEELLESGKADPNVVSGEQRERLAMSVERINQSGERIRESRRVMLETE 145 (219)
Q Consensus 80 -------------~~l~~l~~~~~~~~~~~-~r~~L~~~~~~~~~~~~~~~r~~l~~~~~~l~~~~~~L~~s~~~~~ete 145 (219)
.++..++.+.+.+.... .+++++.. |....+.+.+...+=.=+.|
T Consensus 434 ~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~q---------------L~~e~e~~~k~~~Rs~Yt~R------ 492 (594)
T PF05667_consen 434 KASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQ---------------LVKELEKLPKDVNRSAYTRR------ 492 (594)
T ss_pred HHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHhCCCCCCHHHHHHH------
Q ss_pred HHHHHHHHHHHHhhHHHHHhhhhhhhhhHhHHHHHHHHHH
Q 047357 146 ELGISIVEDLNQQRETLLNSRNKLHGVDDAISKSKKVLSS 185 (219)
Q Consensus 146 ~~g~~i~~~L~~Qre~L~~~~~~~~~i~~~l~~s~~~l~~ 185 (219)
=.+|..++..|++-|.++-.....++..+.....-+.+
T Consensus 493 --IlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~R 530 (594)
T PF05667_consen 493 --ILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDR 530 (594)
T ss_pred --HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 309
>COG5052 YOP1 Protein involved in membrane traffic [Intracellular trafficking and secretion]
Probab=27.34 E-value=2.4e+02 Score=22.10 Aligned_cols=40 Identities=15% Similarity=0.127 Sum_probs=21.8
Q ss_pred HHHHHhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047357 160 ETLLNSRNKLHGVDDAISKSKKVLSSMSRRMTRNKWIVGSI 200 (219)
Q Consensus 160 e~L~~~~~~~~~i~~~l~~s~~~l~~m~rr~~~dk~Il~~i 200 (219)
+.+.++...+...+..+. +..+++.+.++.-..|.-+.++
T Consensus 3 ~~l~~is~aM~~l~~t~~-~~piL~~ie~~~~~~k~Y~~~~ 42 (186)
T COG5052 3 GQLVNISVAMLVLDNTLQ-AFPILREIENLYNRYKKYFMAG 42 (186)
T ss_pred hHHHHHHHHHHHHHHHHH-hhHHHHHHHHHhCcchhhHHHH
Confidence 345555656665555554 3456666666655555444333
No 310
>cd07669 BAR_SNX33 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 33. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX33 interacts with Wiskott-Aldrich syndrome protein (WASP) and plays a role in the maintenance of cell shape and cell cycle progression. It modulates the shedding and endocytosis of cellular prion protein (PrP(c)) and amyloid precursor protein (APP). BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=27.23 E-value=1.9e+02 Score=23.20 Aligned_cols=55 Identities=20% Similarity=0.362 Sum_probs=41.7
Q ss_pred HHHHHchHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 047357 39 YSEIQSGLDDADALIRKMDLEARSLQPNVKAMLLAKLREYKSDLNKLKREFKRVS 93 (219)
Q Consensus 39 ~~~~~~~l~~a~~~~~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~~l~~~~~~~~ 93 (219)
..+++..++....-++.|+.-+..+.......++.-...++.++..+...|..+.
T Consensus 7 ~~~Ve~kid~f~~F~k~MD~svk~l~~~~~e~~kk~~~~~kkEyqkiG~af~~Ls 61 (207)
T cd07669 7 LQDVEERVDVFKAFSKKMDDSVLQLSNVASELVRKHLGGFRKEFQKLGNAFQAIS 61 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH
Confidence 4678888888888888888877776554445566667788888888888887664
No 311
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=27.20 E-value=3.3e+02 Score=24.03 Aligned_cols=51 Identities=14% Similarity=0.173 Sum_probs=30.1
Q ss_pred HHHHHHHchHHHHHHHHHHHHHHHhcCChh--HHHHHHHHHHHHHHHHHHHHH
Q 047357 37 EKYSEIQSGLDDADALIRKMDLEARSLQPN--VKAMLLAKLREYKSDLNKLKR 87 (219)
Q Consensus 37 ~~~~~~~~~l~~a~~~~~~m~~E~~~~~~~--~r~~~~~k~~~~~~~l~~l~~ 87 (219)
..+..++..+.+++..+..++..+...|.. ....+.+++..+..++.+++.
T Consensus 242 ~~~~~l~~~~~~~~~~i~~l~~~l~~~~k~~~k~~~~~~q~~~~~k~~~~~~~ 294 (406)
T PF02388_consen 242 EYLESLQEKLEKLEKEIEKLEEKLEKNPKKKNKLKELEEQLASLEKRIEEAEE 294 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 556778888888888888888877777621 122344444444444444433
No 312
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=27.18 E-value=2.1e+02 Score=19.52 Aligned_cols=46 Identities=13% Similarity=0.243 Sum_probs=32.1
Q ss_pred HhhHHHHHhhhhhhhhhHhHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q 047357 157 QQRETLLNSRNKLHGVDDAISKSKKVLSSMS---RRMTRNKWIVGSIIV 202 (219)
Q Consensus 157 ~Qre~L~~~~~~~~~i~~~l~~s~~~l~~m~---rr~~~dk~Il~~ii~ 202 (219)
.-++.+..+..++......+....+-.+.+. |+.+++++|--+.++
T Consensus 5 ~l~~e~e~~~~kl~q~e~~~k~L~nr~k~l~k~eRK~RtHRLi~rGa~l 53 (86)
T PF12958_consen 5 ELQAEIEKAEKKLEQAEHKIKQLENRKKKLEKKERKERTHRLIERGAIL 53 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3344555666667777777777776667666 899999998876654
No 313
>PRK13718 conjugal transfer protein TrbE; Provisional
Probab=27.16 E-value=1e+02 Score=20.63 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc
Q 047357 196 IVGSIIVALVIAIIFILFYKLS 217 (219)
Q Consensus 196 Il~~ii~~l~~~i~~vi~~k~~ 217 (219)
|++.++++++.-.+|.+..|..
T Consensus 50 I~~~gv~~~~ly~ffs~Ltkl~ 71 (84)
T PRK13718 50 ILYSGVLLFILYFFFSALTKLQ 71 (84)
T ss_pred HHHHhHHHHHHHHHHHHHHHHH
Confidence 3434444444444444444443
No 314
>MTH00158 ATP8 ATP synthase F0 subunit 8; Provisional
Probab=27.07 E-value=1.1e+02 Score=16.44 Aligned_cols=22 Identities=14% Similarity=0.214 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 047357 193 NKWIVGSIIVALVIAIIFILFY 214 (219)
Q Consensus 193 dk~Il~~ii~~l~~~i~~vi~~ 214 (219)
+.+++++...++++.+...+|+
T Consensus 8 ~W~~l~~~f~~~~~~~~~~~~f 29 (32)
T MTH00158 8 NWLILFILFLITFILFNILNYF 29 (32)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555544444444444
No 315
>KOG4075 consensus Cytochrome c oxidase, subunit IV/COX5b [Energy production and conversion]
Probab=27.07 E-value=68 Score=24.67 Aligned_cols=33 Identities=27% Similarity=0.239 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047357 184 SSMSRRMTRNKWIVGSIIVALVIAIIFILFYKL 216 (219)
Q Consensus 184 ~~m~rr~~~dk~Il~~ii~~l~~~i~~vi~~k~ 216 (219)
.-|.+..-.-|.++.+...+|.++|.+++|.++
T Consensus 90 ae~~~~~~ewKtv~g~~~~f~Gl~~~v~l~~~v 122 (167)
T KOG4075|consen 90 AERNRGSNEWKTVFGVAGFFLGLTISVILFGKV 122 (167)
T ss_pred ccccCCCCcccchhhHHHHHHHHHHHHHHHHhh
Confidence 334444455677887777788888888877765
No 316
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.01 E-value=6.2e+02 Score=24.94 Aligned_cols=86 Identities=14% Similarity=0.214 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHhhhhhcCC-CChh----HHHHHHHHHHchHHHHHHHHHHHHHHHhcCCh------hHHHHHHHHHH
Q 047357 8 YERQYCELSTNLSRKCSSASLL-PDGD----QKKEKYSEIQSGLDDADALIRKMDLEARSLQP------NVKAMLLAKLR 76 (219)
Q Consensus 8 ye~e~~~~~~~i~~~l~~~~~~-~~~~----~~~~~~~~~~~~l~~a~~~~~~m~~E~~~~~~------~~r~~~~~k~~ 76 (219)
+.-+|..+..+....+..+-+. ++-+ .......+..+....+++.+..++.++..+.. .....+..++.
T Consensus 616 lD~~f~kL~kele~~i~k~ls~~~eee~~~~~~~k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq 695 (970)
T KOG0946|consen 616 LDFEFKKLFKELEGLIAKLLSSKTEEEEQTQLAEKYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQ 695 (970)
T ss_pred hhHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777777777665332 1111 12233444555555555556555555544321 12335555555
Q ss_pred HHHHHHHHHHHHHHhhc
Q 047357 77 EYKSDLNKLKREFKRVS 93 (219)
Q Consensus 77 ~~~~~l~~l~~~~~~~~ 93 (219)
.......+++++|.-++
T Consensus 696 ~~~s~hsql~~q~~~Lk 712 (970)
T KOG0946|consen 696 DFISEHSQLKDQLDLLK 712 (970)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555555555555443
No 317
>KOG3457 consensus Sec61 protein translocation complex, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=26.80 E-value=59 Score=22.08 Aligned_cols=16 Identities=13% Similarity=0.266 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHhhccC
Q 047357 204 LVIAIIFILFYKLSHH 219 (219)
Q Consensus 204 l~~~i~~vi~~k~~~~ 219 (219)
+...+.+-||-||.++
T Consensus 71 IasV~~LHi~gK~~~~ 86 (88)
T KOG3457|consen 71 IASVFALHIWGKLTRS 86 (88)
T ss_pred HHHHHHHHHHHHHhhc
Confidence 3344455677787764
No 318
>PRK06287 cobalt transport protein CbiN; Validated
Probab=26.75 E-value=93 Score=22.08 Aligned_cols=21 Identities=19% Similarity=0.240 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 047357 196 IVGSIIVALVIAIIFILFYKL 216 (219)
Q Consensus 196 Il~~ii~~l~~~i~~vi~~k~ 216 (219)
|+.+++.++++++++....++
T Consensus 80 ilsgiiGv~i~l~l~~~~~~~ 100 (107)
T PRK06287 80 IIAMVIGTLLVLALAYGVGKI 100 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444455544333333333333
No 319
>cd07668 BAR_SNX9 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX9, also known as SH3PX1, is a cytosolic protein that interacts with proteins associated with clathrin-coated pits such as Cdc-42-associated tyrosine kinase 2 (ACK2). It binds class I polyproline sequences found in dynamin 1/2 and the WASP/N-WASP actin regulators. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosi
Probab=26.71 E-value=2e+02 Score=23.15 Aligned_cols=55 Identities=11% Similarity=0.146 Sum_probs=40.4
Q ss_pred HHHHHchHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 047357 39 YSEIQSGLDDADALIRKMDLEARSLQPNVKAMLLAKLREYKSDLNKLKREFKRVS 93 (219)
Q Consensus 39 ~~~~~~~l~~a~~~~~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~~l~~~~~~~~ 93 (219)
..++|..++....-.+.|+.-+..+.......++.-...+++++..+...|..+.
T Consensus 7 ~~~VE~kid~f~~F~k~MD~svk~l~~~~~e~~kk~~~~~KkEyqkiG~af~~Ls 61 (210)
T cd07668 7 LVEIEQKCEAVGRFTKAMDDGVKELLTVGQEHWKRCTGPLPKEYQKIGKALQSLA 61 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH
Confidence 3577788888888888888877766544445566666788888888888787664
No 320
>PRK10856 cytoskeletal protein RodZ; Provisional
Probab=26.65 E-value=45 Score=28.75 Aligned_cols=11 Identities=27% Similarity=0.434 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q 047357 72 LAKLREYKSDL 82 (219)
Q Consensus 72 ~~k~~~~~~~l 82 (219)
-.++++.|+..
T Consensus 16 G~~Lr~aRe~~ 26 (331)
T PRK10856 16 GERLRQAREQL 26 (331)
T ss_pred HHHHHHHHHHc
Confidence 34444444433
No 321
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=26.54 E-value=2e+02 Score=19.19 Aligned_cols=33 Identities=12% Similarity=0.163 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHhhHHHHHhhhhhhhhhHhH
Q 047357 144 TEELGISIVEDLNQQRETLLNSRNKLHGVDDAI 176 (219)
Q Consensus 144 te~~g~~i~~~L~~Qre~L~~~~~~~~~i~~~l 176 (219)
+.+-...++++...+-+.+..+-+.+.++...+
T Consensus 52 ll~~~n~l~~dv~~k~~~v~~~~~~v~~~g~~v 84 (90)
T PF06103_consen 52 LLHNTNELLEDVNEKLEKVDPVFEAVADLGESV 84 (90)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444444433
No 322
>PF10280 Med11: Mediator complex protein ; InterPro: IPR019404 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med11 of the Mediator complex []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 3R84_S 3RJ1_O.
Probab=26.52 E-value=2.4e+02 Score=20.13 Aligned_cols=59 Identities=17% Similarity=0.244 Sum_probs=33.4
Q ss_pred HHHHHHHHHHchHHH----HHHHHHHHHHHHhc--CChhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047357 34 QKKEKYSEIQSGLDD----ADALIRKMDLEARS--LQPNVKAMLLAKLREYKSDLNKLKREFKRV 92 (219)
Q Consensus 34 ~~~~~~~~~~~~l~~----a~~~~~~m~~E~~~--~~~~~r~~~~~k~~~~~~~l~~l~~~~~~~ 92 (219)
+|-..+.+++..|-. |..++..+--.-.. -|++.+.....-..+|-..++.....+++-
T Consensus 3 eRL~~L~~Idk~I~~lL~~A~~ai~~Ls~~~~~~~~~~~~k~~f~~~~~~f~~~L~~V~~~Lr~q 67 (117)
T PF10280_consen 3 ERLQQLNEIDKKIVSLLQHAGQAIQELSNPKSPDQDPESSKEAFESATSEFFSTLSSVEVELRRQ 67 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---TGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555554444 44444443332221 133456788888888888888877777543
No 323
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=26.36 E-value=4.6e+02 Score=23.47 Aligned_cols=24 Identities=21% Similarity=0.386 Sum_probs=10.9
Q ss_pred HHHHHHHchHHHHHHHHHHHHHHH
Q 047357 37 EKYSEIQSGLDDADALIRKMDLEA 60 (219)
Q Consensus 37 ~~~~~~~~~l~~a~~~~~~m~~E~ 60 (219)
..+..++..+.++.+.+..++..+
T Consensus 334 ~~~~~l~~~~~~~~~~l~~l~~~l 357 (451)
T PF03961_consen 334 EKLEELEEELEELKEELEKLKKNL 357 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444443
No 324
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=26.22 E-value=4.4e+02 Score=22.91 Aligned_cols=34 Identities=15% Similarity=0.128 Sum_probs=24.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHH
Q 047357 53 IRKMDLEARSLQPNVKAMLLAKLREYKSDLNKLK 86 (219)
Q Consensus 53 ~~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~~l~ 86 (219)
+..+-.++..+|+.+|..+=+.+.+.|+.++..-
T Consensus 39 l~~~~~~l~~l~~eer~~~G~~~n~~k~~~~~~~ 72 (339)
T PRK00488 39 LTELLKGLGKLPPEERKEAGALINELKQAIEAAL 72 (339)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445667898888888888888887777643
No 325
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=26.16 E-value=56 Score=27.63 Aligned_cols=9 Identities=22% Similarity=0.700 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 047357 206 IAIIFILFY 214 (219)
Q Consensus 206 ~~i~~vi~~ 214 (219)
++|++|.|+
T Consensus 285 vlivLiaYl 293 (306)
T PF01299_consen 285 VLIVLIAYL 293 (306)
T ss_pred HHHHHHhhe
Confidence 333333443
No 326
>PF10389 CoatB: Bacteriophage coat protein B ; InterPro: IPR008020 The major coat protein in the capsid of filamentous bacteriophage forms a helical assembly of about 7000 identical protomers, with each protomer comprised of 46 amino acids, after the cleavage of the signal peptide. Each protomer forms a slightly curved helix that combines to form a tubular structure that encapsulates the viral DNA [].; PDB: 2IFO_A.
Probab=26.12 E-value=74 Score=18.97 Aligned_cols=8 Identities=38% Similarity=0.501 Sum_probs=4.8
Q ss_pred HHHHhhcc
Q 047357 211 ILFYKLSH 218 (219)
Q Consensus 211 vi~~k~~~ 218 (219)
+-.|||.|
T Consensus 36 i~v~kwiR 43 (46)
T PF10389_consen 36 IAVYKWIR 43 (46)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44567766
No 327
>PF02609 Exonuc_VII_S: Exonuclease VII small subunit; InterPro: IPR003761 Exonuclease VII is composed of two non-identical subunits; one large subunit and 4 small ones []. This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield nucleoside 5'-phosphates.; GO: 0008855 exodeoxyribonuclease VII activity, 0006308 DNA catabolic process, 0009318 exodeoxyribonuclease VII complex; PDB: 1VP7_F.
Probab=26.12 E-value=1.6e+02 Score=17.76 Aligned_cols=46 Identities=11% Similarity=0.037 Sum_probs=21.3
Q ss_pred HHHHHHHHhhhhhcCC-CChhHHHHHHHHHHchHHHHHHHHHHHHHH
Q 047357 14 ELSTNLSRKCSSASLL-PDGDQKKEKYSEIQSGLDDADALIRKMDLE 59 (219)
Q Consensus 14 ~~~~~i~~~l~~~~~~-~~~~~~~~~~~~~~~~l~~a~~~~~~m~~E 59 (219)
..+..+...+.++.+. .+-++-...+.+.-..++.+...++..+..
T Consensus 3 e~~~~Le~Iv~~Le~~~~sLdes~~lyeeg~~l~~~c~~~L~~~e~~ 49 (53)
T PF02609_consen 3 EAMERLEEIVEKLESGELSLDESLKLYEEGMELIKKCQERLEEAEQK 49 (53)
T ss_dssp HHHHHHHHHHHHHHTT-S-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555432 023444455555555555555555544443
No 328
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=26.11 E-value=1.9e+02 Score=18.70 Aligned_cols=28 Identities=32% Similarity=0.430 Sum_probs=23.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047357 64 QPNVKAMLLAKLREYKSDLNKLKREFKR 91 (219)
Q Consensus 64 ~~~~r~~~~~k~~~~~~~l~~l~~~~~~ 91 (219)
+|..+..+..++.+|....+.++.-+..
T Consensus 45 ~~~~k~~~~~k~~eyl~RaE~LK~~l~~ 72 (75)
T cd02678 45 NPKSKESIRAKCTEYLDRAEKLKEYLAK 72 (75)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566788999999999999999887643
No 329
>PF03993 DUF349: Domain of Unknown Function (DUF349); InterPro: IPR007139 This motif is found singly or as up to five tandem repeats in a small set of bacterial proteins. There are two or three alpha-helices, and possibly a beta-strand.
Probab=26.08 E-value=1.8e+02 Score=18.50 Aligned_cols=46 Identities=13% Similarity=0.118 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCCChhHHHHHHHHHHchHHHHHHHHHHHHHHHh
Q 047357 8 YERQYCELSTNLSRKCSSASLLPDGDQKKEKYSEIQSGLDDADALIRKMDLEAR 61 (219)
Q Consensus 8 ye~e~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~m~~E~~ 61 (219)
....|+.+++.+.......-.. .-...+..+..-+.+|.+++--+.
T Consensus 3 Lw~~F~~a~~~~~~~~~~~~~~--------~~~~~~~n~~~K~~Li~~~~~l~~ 48 (77)
T PF03993_consen 3 LWKRFRAACDAFFDRRKEFFEE--------QDAEREENLEKKEALIEEAEALAE 48 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3455666666666655554221 112333445555555555544333
No 330
>PRK09720 cybC cytochrome b562; Provisional
Probab=25.95 E-value=2.4e+02 Score=19.83 Aligned_cols=17 Identities=6% Similarity=0.253 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 047357 5 FEGYERQYCELSTNLSR 21 (219)
Q Consensus 5 f~~ye~e~~~~~~~i~~ 21 (219)
|.+|..-|..++.+|+.
T Consensus 52 ~K~y~~Gld~lI~qID~ 68 (100)
T PRK09720 52 MKDFRHGFDILVGQIDD 68 (100)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444433
No 331
>PF10256 Erf4: Golgin subfamily A member 7/ERF4 family; InterPro: IPR019383 Proteins in this entry include Golgin subfamily A member 7 and the Ras modification protein ERF4.
Probab=25.83 E-value=2.1e+02 Score=20.22 Aligned_cols=14 Identities=14% Similarity=0.297 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHH
Q 047357 198 GSIIVALVIAIIFI 211 (219)
Q Consensus 198 ~~ii~~l~~~i~~v 211 (219)
..++.+|.+.++.+
T Consensus 60 ~~~l~~lt~~l~~~ 73 (118)
T PF10256_consen 60 ENILGCLTLGLSSL 73 (118)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444333
No 332
>PRK10697 DNA-binding transcriptional activator PspC; Provisional
Probab=25.72 E-value=1.5e+02 Score=21.44 Aligned_cols=34 Identities=18% Similarity=0.165 Sum_probs=27.4
Q ss_pred hhHHHHHHHHHHchHHHHHHHHHHHHHHHhcCCh
Q 047357 32 GDQKKEKYSEIQSGLDDADALIRKMDLEARSLQP 65 (219)
Q Consensus 32 ~~~~~~~~~~~~~~l~~a~~~~~~m~~E~~~~~~ 65 (219)
++..+.++..++..++.++.-+.+||..+-+-..
T Consensus 76 ~~s~~~~l~~~~~~~~~~e~Rlr~mE~yVTS~~f 109 (118)
T PRK10697 76 QPSSSELLDEVDRELAAGEQRLREMERYVTSDTF 109 (118)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 3456678999999999999999999998766543
No 333
>TIGR02284 conserved hypothetical protein. Members of this protein family are found mostly in the Proteobacteria, although one member is found in the the marine planctomycete Pirellula sp. strain 1. The function is unknown.
Probab=25.70 E-value=2.8e+02 Score=20.46 Aligned_cols=122 Identities=7% Similarity=0.080 Sum_probs=59.6
Q ss_pred HHHHchHHHHHHHHHHHHHHHhcCC-hhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHhhhccCCCCCCCCCCHHHHH
Q 047357 40 SEIQSGLDDADALIRKMDLEARSLQ-PNVKAMLLAKLREYKSDLNKLKREFKRVSSSDAHEELLESGKADPNVVSGEQRE 118 (219)
Q Consensus 40 ~~~~~~l~~a~~~~~~m~~E~~~~~-~~~r~~~~~k~~~~~~~l~~l~~~~~~~~~~~~r~~L~~~~~~~~~~~~~~~r~ 118 (219)
..+...|.-..+-+..++.-+..+. |..+..+.....++..-...|+..+..+ |+.+.+.++....-..
T Consensus 3 ~~Ln~Lie~~~D~~~gY~~aae~v~~~~lk~~f~~~~~~~~~~~~eL~~~v~~l----------Gg~p~~~gs~~g~lhr 72 (139)
T TIGR02284 3 HSLNDLIEISIDGKDGFEESAEEVKDPELATLFRRIAGEKSAIVSELQQVVASL----------GGKPEDHGSMVGSLHQ 72 (139)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCCCCCCCcHHHHHHH
Confidence 3445555555555666666555554 4455555555566666666666555433 3332211111111111
Q ss_pred HHHhhHH------------HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhh
Q 047357 119 RLAMSVE------------RINQSGERIRESRRVMLETEELGISIVEDLNQQRETLLNSRNKLHG 171 (219)
Q Consensus 119 ~l~~~~~------------~l~~~~~~L~~s~~~~~ete~~g~~i~~~L~~Qre~L~~~~~~~~~ 171 (219)
..+.-.. ...++.+.+-..-.-+-+-.....++..-|..|...+++..+.+..
T Consensus 73 ~w~~lks~~~~~~d~aiL~~~e~gEd~~~~~y~~aL~~~~l~~~~r~~l~~q~~~i~~~~d~i~~ 137 (139)
T TIGR02284 73 FWGKIRATLTPNDDYVVLEEAERGEDRAKKAYDETLADQDTPAAARDVALRQYPGVRACHDVIRA 137 (139)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHhHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHh
Confidence 1111111 1222233333333333333356777777888888888888777654
No 334
>PF13198 DUF4014: Protein of unknown function (DUF4014)
Probab=25.61 E-value=1.7e+02 Score=19.18 Aligned_cols=17 Identities=12% Similarity=0.370 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 047357 186 MSRRMTRNKWIVGSIIV 202 (219)
Q Consensus 186 m~rr~~~dk~Il~~ii~ 202 (219)
..||-++.-+.+.+..+
T Consensus 9 Y~rrSr~~efLF~ilfI 25 (72)
T PF13198_consen 9 YPRRSRKTEFLFFILFI 25 (72)
T ss_pred ccchhHHHHHHHHHHHH
Confidence 44555555555544333
No 335
>PF08135 EPV_E5: Major transforming protein E5 family; InterPro: IPR012555 This family consists of the major transforming proteins (E5) of the bovine papilloma virus (BPV). The equine sarcoid is one of the most common dermatological lesion in equids. It is a benign, locally invasive dermal fibroblastic lesion and studies have shown an association of the lesions with BPV. E5 is a short hydrophobic membrane protein localising to the Golgi apparatus and other intracellular membranes. It binds to and constitutively activates the platelet-derived growth factor-beta in transformed cells. This stimulation activates a receptor signalling cascade which results in an intracellular growth stimulatory signal [].
Probab=25.58 E-value=95 Score=17.99 Aligned_cols=12 Identities=8% Similarity=0.697 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHH
Q 047357 203 ALVIAIIFILFY 214 (219)
Q Consensus 203 ~l~~~i~~vi~~ 214 (219)
++++.++|.+||
T Consensus 21 L~FlL~fFLV~W 32 (44)
T PF08135_consen 21 LVFLLFFFLVYW 32 (44)
T ss_pred HHHHHHHHHHHH
Confidence 344445556665
No 336
>PF09748 Med10: Transcription factor subunit Med10 of Mediator complex; InterPro: IPR019145 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med10 is one of the protein subunits of the Mediator complex, tethered to Med14 (Rgr1) protein. Med10 specifically mediates basal-level HIS4 transcription via Gcn4. In addition, there is a putative requirement for Med10 in Bas2-mediated transcription []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=25.22 E-value=2.6e+02 Score=20.39 Aligned_cols=48 Identities=17% Similarity=0.284 Sum_probs=33.7
Q ss_pred HchHHHHHHHHHHHHHHHhcCC-hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 047357 43 QSGLDDADALIRKMDLEARSLQ-PNVKAMLLAKLREYKSDLNKLKREFK 90 (219)
Q Consensus 43 ~~~l~~a~~~~~~m~~E~~~~~-~~~r~~~~~k~~~~~~~l~~l~~~~~ 90 (219)
+..|++.-..+.++..-+.... ++.+..+..++..+-..+..+.+--.
T Consensus 2 e~~l~~~i~~l~el~~~v~d~~~~~s~~~L~~ki~~lv~~L~~l~~~~~ 50 (128)
T PF09748_consen 2 EQQLEDVIQSLYELGVIVSDFQGPPSQEALNQKINQLVTSLQELDKLAQ 50 (128)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556666666777777777776 56667888888887777777665543
No 337
>PF04678 DUF607: Protein of unknown function, DUF607; InterPro: IPR006769 This entry represents the C-terminal domain of coiled-coil domain containing protein 109.
Probab=25.02 E-value=3.3e+02 Score=21.07 Aligned_cols=65 Identities=15% Similarity=0.169 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHhhHHHHHhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047357 147 LGISIVEDLNQQRETLLNSRNKLHGVDDAISKSKKVLSSMSRRMTRNKWIVGSIIVALVIAIIFILFY 214 (219)
Q Consensus 147 ~g~~i~~~L~~Qre~L~~~~~~~~~i~~~l~~s~~~l~~m~rr~~~dk~Il~~ii~~l~~~i~~vi~~ 214 (219)
++.........=+..|......+......-...+.......+|.. +..++.+++-+++++...|+
T Consensus 51 ~~~~~~~~~~~l~~~l~~~~~el~~le~~k~~id~~A~~~~~~~~---w~gl~~l~~q~~~l~rLTf~ 115 (180)
T PF04678_consen 51 VEEYQNSRERQLRKRLEELRQELAPLEKIKQEIDEKAEKRARRLL---WGGLALLVVQFGILARLTFW 115 (180)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhh
Confidence 333333333333444555555555554444444444554444444 33333333444444445554
No 338
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=24.96 E-value=2e+02 Score=18.46 Aligned_cols=28 Identities=29% Similarity=0.476 Sum_probs=23.1
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 047357 63 LQPNVKAMLLAKLREYKSDLNKLKREFK 90 (219)
Q Consensus 63 ~~~~~r~~~~~k~~~~~~~l~~l~~~~~ 90 (219)
.++..+..+..++.+|....+.++..+.
T Consensus 44 ~~~~~k~~l~~k~~~yl~RaE~Lk~~l~ 71 (75)
T cd02656 44 KEPKLRKLLRKKVKEYLDRAEFLKELLK 71 (75)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3466788999999999999999988764
No 339
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=24.93 E-value=2e+02 Score=18.69 Aligned_cols=86 Identities=17% Similarity=0.217 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcCC---CChhHH---HHHHHHHHchHHHHHHHHHHHHHHHhcC---ChhHHHHHHHHH
Q 047357 5 FEGYERQYCELSTNLSRKCSSASLL---PDGDQK---KEKYSEIQSGLDDADALIRKMDLEARSL---QPNVKAMLLAKL 75 (219)
Q Consensus 5 f~~ye~e~~~~~~~i~~~l~~~~~~---~~~~~~---~~~~~~~~~~l~~a~~~~~~m~~E~~~~---~~~~r~~~~~k~ 75 (219)
|..|..++..+..=|...-..+... .+.+.- ......+...+......++.+......+ +|.....+..++
T Consensus 3 ~~~f~~~~~~l~~Wl~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L~~~~~~~~~~i~~~~ 82 (105)
T PF00435_consen 3 LQQFQQEADELLDWLQETEAKLSSSEPGSDLEELEEQLKKHKELQEEIESRQERLESLNEQAQQLIDSGPEDSDEIQEKL 82 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSCTHSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 5667777766666666655555322 122222 2334444444544444444444333322 234456777777
Q ss_pred HHHHHHHHHHHHHHH
Q 047357 76 REYKSDLNKLKREFK 90 (219)
Q Consensus 76 ~~~~~~l~~l~~~~~ 90 (219)
......++.+.....
T Consensus 83 ~~l~~~w~~l~~~~~ 97 (105)
T PF00435_consen 83 EELNQRWEALCELVE 97 (105)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777777766554
No 340
>PF08999 SP_C-Propep: Surfactant protein C, N terminal propeptide; InterPro: IPR015091 The N-terminal propeptide of surfactant protein C adopts an alpha-helical structure, with turn and extended regions. Its main function is the stabilisation of metastable surfactant protein C (SP-C), since the latter can irreversibly transform from its native alpha-helical structure to beta-sheet aggregates and form amyloid-like fibrils. The correct intracellular trafficking of proSP-C has also been reported to depend on the propeptide []. ; PDB: 1SPF_A 2YAD_F.
Probab=24.92 E-value=1.8e+02 Score=19.58 Aligned_cols=18 Identities=28% Similarity=0.495 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 047357 196 IVGSIIVALVIAIIFILF 213 (219)
Q Consensus 196 Il~~ii~~l~~~i~~vi~ 213 (219)
|+.++++++++.|+-++.
T Consensus 38 iivvVvVlvVvvivg~LL 55 (93)
T PF08999_consen 38 IIVVVVVLVVVVIVGALL 55 (93)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred EEEEeeehhHHHHHHHHH
Confidence 333333333333333333
No 341
>PF03554 Herpes_UL73: UL73 viral envelope glycoprotein ; InterPro: IPR005211 This entry represents a conserved region found in a number of viral proteins: BLRF1, U46, 53, and UL73, collectively known as glycoprotein N. These UL73-like envelope glycoproteins, which associate in a high molecular mass complex with their counterpart protein gM, induce neutralizing antibody responses in the host. These glycoproteins are highly polymorphic, particularly in the N-terminal region [].; GO: 0019031 viral envelope
Probab=24.89 E-value=1.1e+02 Score=20.69 Aligned_cols=18 Identities=17% Similarity=0.429 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 047357 198 GSIIVALVIAIIFILFYK 215 (219)
Q Consensus 198 ~~ii~~l~~~i~~vi~~k 215 (219)
|+++-++++++.+.+|+|
T Consensus 52 W~iiN~~il~~A~~vyLr 69 (82)
T PF03554_consen 52 WAIINVVILLCAFCVYLR 69 (82)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444455555554
No 342
>TIGR01906 integ_TIGR01906 integral membrane protein TIGR01906. This model represents a family of highly hydrophobic, uncharacterized predicted integral membrane proteins found almost entirely in low-GC Gram-positive bacteria, although a member is also found in the early-branching bacterium Aquifex aeolicus.
Probab=24.83 E-value=1.1e+02 Score=24.40 Aligned_cols=40 Identities=15% Similarity=0.264 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 047357 180 KKVLSSMSRRMTRNKWIVGSIIVALVIAIIFILFYKLSHH 219 (219)
Q Consensus 180 ~~~l~~m~rr~~~dk~Il~~ii~~l~~~i~~vi~~k~~~~ 219 (219)
+.+++.+--.-.-+-+|+++++..++++.++++|.+..||
T Consensus 168 DpiI~iLPE~FF~~~~i~i~~l~~~~~~~~~~~~~~~~~~ 207 (207)
T TIGR01906 168 DPIINILPEKFFLHAFILIFILIEILFIIGGILYKKKLKK 207 (207)
T ss_pred ChhHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3444444444555544555555545555555566655554
No 343
>PF15361 RIC3: Resistance to inhibitors of cholinesterase homologue 3
Probab=24.76 E-value=75 Score=24.11 Aligned_cols=18 Identities=22% Similarity=0.427 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcc
Q 047357 198 GSIIVALVIAIIFILFYKLSH 218 (219)
Q Consensus 198 ~~ii~~l~~~i~~vi~~k~~~ 218 (219)
|.|.+++ +++++++|+++
T Consensus 89 YtiGI~~---f~lY~l~Ki~~ 106 (152)
T PF15361_consen 89 YTIGIVL---FILYTLFKIKK 106 (152)
T ss_pred HHHHHHH---HHHHHHHHHHh
Confidence 5544433 23344455544
No 344
>PF05781 MRVI1: MRVI1 protein; InterPro: IPR008677 This family consists of mammalian MRVI1 proteins which are related to the lymphoid-restricted membrane protein (JAW1) and the IP3 receptor associated cGMP kinase substrates A and B (IRAGA and IRAGB). The function of MRVI1 is unknown although mutations in the Mrvi1 gene induces myeloid leukaemia by altering the expression of a gene important for myeloid cell growth and/or differentiation so it has been speculated that Mrvi1 is a tumour suppressor gene []. IRAG is very similar in sequence to MRVI1 and is an essential NO/cGKI-dependent regulator of IP3-induced calcium release. Activation of cGKI decreases IP3-stimulated elevations in intracellular calcium, induces smooth muscle relaxation and contributes to the antiproliferative and pro-apoptotic effects of NO/cGMP []. Jaw1 is a member of a class of proteins with COOH-terminal hydrophobic membrane anchors and is structurally similar to proteins involved in vesicle targeting and fusion. This suggests that the function and/or the structure of the ER in lymphocytes may be modified by lymphoid-restricted resident ER proteins [].
Probab=24.66 E-value=2.7e+02 Score=25.76 Aligned_cols=25 Identities=16% Similarity=0.295 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHchHHHHHHHHHHHH
Q 047357 33 DQKKEKYSEIQSGLDDADALIRKMD 57 (219)
Q Consensus 33 ~~~~~~~~~~~~~l~~a~~~~~~m~ 57 (219)
.+....++++...|+=+..+...+-
T Consensus 251 ~e~~e~~~kl~~~l~~l~~~~~rvs 275 (538)
T PF05781_consen 251 NESREIIQKLQKSLDVLHQCATRVS 275 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666655555544444433
No 345
>PF14899 DUF4492: Domain of unknown function (DUF4492)
Probab=24.60 E-value=1.4e+02 Score=19.10 Aligned_cols=19 Identities=16% Similarity=0.160 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 047357 196 IVGSIIVALVIAIIFILFY 214 (219)
Q Consensus 196 Il~~ii~~l~~~i~~vi~~ 214 (219)
.+|.||++=++++++|+=.
T Consensus 20 tLW~IIliKLfImF~vLK~ 38 (64)
T PF14899_consen 20 TLWLIILIKLFIMFAVLKL 38 (64)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566777655555555433
No 346
>PF05084 GRA6: Granule antigen protein (GRA6); InterPro: IPR008119 Toxoplasma gondii is an obligate intracellular apicomplexan protozoan parasite, with a complex lifestyle involving varied hosts []. It has two phases of growth: an intestinal phase in feline hosts, and an extra-intestinal phase in other mammals. Oocysts from infected cats develop into tachyzoites, and eventually, bradyzoites and zoitocysts in the extraintestinal host []. Transmission of the parasite occurs through contact with infected cats or raw/undercooked meat; in immunocompromised individuals, it can cause severe and often lethal toxoplasmosis. Acute infection in healthy humans can sometimes also cause tissue damage []. The protozoan utilises a variety of secretory and antigenic proteins to invade a host and gain access to the intracellular environment []. These originate from distinct organelles in the T. gondii cell termed micronemes, rhoptries, and dense granules. They are released at specific times during invasion to ensure the proteins are allocated to their correct target destinations []. Dense granule antigens (GRAs) are released from the T. gondii tachyzoite while still encapsulated in a host vacuole. Gra6, one of these moieties, is associated with the parasitophorous vacuole []. It possesses a hydrophobic central region flanked by two hydrophilic domains, and is present as a single copy gene in the Toxoplasma gondii genome []. Gra6 shares a similar function with Gra2, in that it is rapidly targeted to a network of membranous tubules that connect with the vacuolar membrane []. Indeed, these two proteins, together with Gra4, form a multimeric complex that stabilises the parasite within the vacuole.
Probab=24.60 E-value=1.1e+02 Score=23.61 Aligned_cols=19 Identities=21% Similarity=0.323 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 047357 188 RRMTRNKWIVGSIIVALVI 206 (219)
Q Consensus 188 rr~~~dk~Il~~ii~~l~~ 206 (219)
|...++++|-.++|++.+.
T Consensus 146 R~Q~RHR~IG~~VlA~~VA 164 (215)
T PF05084_consen 146 RTQKRHRLIGAVVLAVSVA 164 (215)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4466677877777666533
No 347
>KOG4025 consensus Putative apoptosis related protein [Function unknown]
Probab=24.53 E-value=3.4e+02 Score=21.07 Aligned_cols=79 Identities=15% Similarity=0.209 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHH---HHHHhhhhhcCCCChhHHHHHHHHHHchHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHH
Q 047357 5 FEGYERQYCELST---NLSRKCSSASLLPDGDQKKEKYSEIQSGLDDADALIRKMDLEARSLQPNVKAMLLAKLREYKSD 81 (219)
Q Consensus 5 f~~ye~e~~~~~~---~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~m~~E~~~~~~~~r~~~~~k~~~~~~~ 81 (219)
.+.||++|+.+-+ .+...|+++|. .-.+|...+.-++.--..++.+++....-.+-.|-..+....++- .+
T Consensus 88 v~r~E~~fqeLn~ka~aLk~iLSriPd--EinDR~~FLeTIK~IASaIKkLLd~vN~v~~~~p~t~~~AvE~rK----kE 161 (207)
T KOG4025|consen 88 VSRYEQDFQELNKKAIALKRILSRIPD--EINDRHAFLETIKLIASAIKKLLDAVNAVYRIVPLTAQPAVEKRK----KE 161 (207)
T ss_pred hcCCCccHHHHHHHHHHHHHHHHhCcH--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHH----HH
Confidence 3567777777654 45567888865 245666655555554445555555555445556655444444443 34
Q ss_pred HHHHHHHH
Q 047357 82 LNKLKREF 89 (219)
Q Consensus 82 l~~l~~~~ 89 (219)
+-.+.+.|
T Consensus 162 FVkYSK~F 169 (207)
T KOG4025|consen 162 FVKYSKRF 169 (207)
T ss_pred HHHHHHHH
Confidence 44444444
No 348
>COG1033 Predicted exporters of the RND superfamily [General function prediction only]
Probab=24.37 E-value=1.3e+02 Score=28.97 Aligned_cols=68 Identities=21% Similarity=0.301 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 047357 142 LETEELGISIVEDLNQQRETLLNSRNKLHGVDDAISKSKKVLSSMSRRMTRNKWIVGSIIVALVIAIIFILFYKLS 217 (219)
Q Consensus 142 ~ete~~g~~i~~~L~~Qre~L~~~~~~~~~i~~~l~~s~~~l~~m~rr~~~dk~Il~~ii~~l~~~i~~vi~~k~~ 217 (219)
.+.+..+.++...+..+-.... ....+....-+...|..-+.....+..++.+++++++++++|..+.
T Consensus 526 ~~~~~~~~~~~~~i~~~~~~~g--------v~~~vtG~~vi~~~m~~~i~~sq~~~t~l~~~~V~~ll~i~fRs~~ 593 (727)
T COG1033 526 GELEDVGREILRDIEKENIPTG--------VKVYVTGESVIYVEMNELLTSSQLISTVLGIILVFALLLIIFRSPL 593 (727)
T ss_pred hHHHHHHHHHHHHHHhhcCCCC--------cEEEEcCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhchH
Confidence 4555666666666655544433 2244445556667777788888888877777777777777766554
No 349
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=24.37 E-value=2.2e+02 Score=18.87 Aligned_cols=27 Identities=19% Similarity=0.368 Sum_probs=19.5
Q ss_pred HHHHHHHhhHHHHHhhhhhhhhhHhHH
Q 047357 151 IVEDLNQQRETLLNSRNKLHGVDDAIS 177 (219)
Q Consensus 151 i~~~L~~Qre~L~~~~~~~~~i~~~l~ 177 (219)
+-..|..|..+|.....++.+|.+-|.
T Consensus 40 l~~klDa~~~~l~~l~~~V~~I~~iL~ 66 (75)
T PF05531_consen 40 LNKKLDAQSAQLTTLNTKVNEIQDILN 66 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 556677888888888877777766553
No 350
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=24.33 E-value=3.4e+02 Score=20.96 Aligned_cols=18 Identities=6% Similarity=0.239 Sum_probs=7.4
Q ss_pred HchHHHHHHHHHHHHHHH
Q 047357 43 QSGLDDADALIRKMDLEA 60 (219)
Q Consensus 43 ~~~l~~a~~~~~~m~~E~ 60 (219)
....++++...+++..+.
T Consensus 47 tk~veeLe~~~~q~~~~~ 64 (165)
T PF09602_consen 47 TKQVEELEKELKQFKREF 64 (165)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444444444433
No 351
>PF11174 DUF2970: Protein of unknown function (DUF2970); InterPro: IPR021344 This short family is conserved in Proteobacteria. The function is not known.
Probab=24.22 E-value=1.5e+02 Score=18.42 Aligned_cols=19 Identities=26% Similarity=0.483 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 047357 195 WIVGSIIVALVIAIIFILF 213 (219)
Q Consensus 195 ~Il~~ii~~l~~~i~~vi~ 213 (219)
+|+.+++..++++.+++..
T Consensus 33 ~Ii~gii~~~~fV~~Lv~l 51 (56)
T PF11174_consen 33 FIIVGIILAALFVAGLVLL 51 (56)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444443333333333
No 352
>PRK15366 type III secretion system chaperone SsaE; Provisional
Probab=24.16 E-value=2.3e+02 Score=18.95 Aligned_cols=9 Identities=22% Similarity=0.752 Sum_probs=5.4
Q ss_pred HHHHHhhcc
Q 047357 210 FILFYKLSH 218 (219)
Q Consensus 210 ~vi~~k~~~ 218 (219)
-++|+++++
T Consensus 63 n~i~~ryhn 71 (80)
T PRK15366 63 NIIYYRYHN 71 (80)
T ss_pred HHHHHHHhc
Confidence 356776664
No 353
>PF05115 PetL: Cytochrome B6-F complex subunit VI (PetL); InterPro: IPR007802 This family consists of several Cytochrome B6-F complex subunit VI (PetL) proteins found in a number of plant species. PetL is one of the small subunits which make up the cytochrome b(6)f complex. PetL is not absolutely required for either the accumulation or for the function of cytochrome b6f; in its absence, however, the complex becomes unstable in vivo in aging cells and labile in vitro. It has been suggested that the N terminus of the protein is likely to lie in the thylakoid lumen [].; GO: 0009055 electron carrier activity, 0009512 cytochrome b6f complex; PDB: 2ZT9_E 1Q90_L.
Probab=23.99 E-value=1.3e+02 Score=16.26 Aligned_cols=22 Identities=18% Similarity=0.218 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 047357 195 WIVGSIIVALVIAIIFILFYKL 216 (219)
Q Consensus 195 ~Il~~ii~~l~~~i~~vi~~k~ 216 (219)
++-|+++++..+++..++|..+
T Consensus 4 iisYf~fL~~al~~t~~lfiGL 25 (31)
T PF05115_consen 4 IISYFGFLLAALTLTLVLFIGL 25 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666543
No 354
>cd01145 TroA_c Periplasmic binding protein TroA_c. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=23.97 E-value=3.1e+02 Score=21.42 Aligned_cols=44 Identities=32% Similarity=0.418 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047357 49 ADALIRKMDLEARSLQPNVKAMLLAKLREYKSDLNKLKREFKRV 92 (219)
Q Consensus 49 a~~~~~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~~l~~~~~~~ 92 (219)
+......+...+....|..+..|......|.++++.+.+.++..
T Consensus 117 ~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~ 160 (203)
T cd01145 117 APALAKALADALIELDPSEQEEYKENLRVFLAKLNKLLREWERQ 160 (203)
T ss_pred HHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555667777899999999999999999888654
No 355
>cd00928 Cyt_c_Oxidase_VIIa Cytochrome c oxidase subunit VIIa. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit VIIa has two tissue-specific isoforms that are expressed in a developmental manner. VIIa-H is expressed in heart and skeletal muscle but not smooth muscle. VIIa-L is expressed in liver and non-muscle tissues.
Probab=23.96 E-value=1.7e+02 Score=18.14 Aligned_cols=24 Identities=8% Similarity=0.189 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 047357 191 TRNKWIVGSIIVALVIAIIFILFY 214 (219)
Q Consensus 191 ~~dk~Il~~ii~~l~~~i~~vi~~ 214 (219)
..|++..-+.+++|+++++..+|.
T Consensus 26 ~~D~~LYr~Tm~L~~vG~~~~~~~ 49 (55)
T cd00928 26 VVDRILYRLTMALTVVGTGYSLYL 49 (55)
T ss_pred chhHHHHHHHHHHHHHhHHHHHHH
Confidence 457887778888888888777665
No 356
>KOG3287 consensus Membrane trafficking protein, emp24/gp25L/p24 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.96 E-value=3.7e+02 Score=21.81 Aligned_cols=37 Identities=11% Similarity=0.195 Sum_probs=20.0
Q ss_pred HHHHhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHH
Q 047357 161 TLLNSRNKLHGVDDAISKSKKVLSSMSRRMTRNKWIV 197 (219)
Q Consensus 161 ~L~~~~~~~~~i~~~l~~s~~~l~~m~rr~~~dk~Il 197 (219)
+|+.+.+.+..+..++..+...-.-..-|.++|+.++
T Consensus 154 kl~di~~~i~~i~~nl~k~~~~q~~lRa~EaRDr~L~ 190 (236)
T KOG3287|consen 154 KLDDIEDSIGTIKNNLNKMWQYQALLRAREARDRNLQ 190 (236)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 3445555555555556655555555555555555443
No 357
>PF01405 PsbT: Photosystem II reaction centre T protein; InterPro: IPR001743 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbT found in PSII, which is thought to be associated with the D1 (PsbA) - D2 (PsbD) heterodimer. PsbT may be involved in the formation and/or stabilisation of dimeric PSII complexes, because in the absence of this protein dimeric PSII complexes were found to be less abundant. Furthermore, although PsbT does not confer photo-protection, it is required for the efficient recovery of photo-damaged PSII [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3BZ1_T 1S5L_t 2AXT_t 3KZI_T 3PRQ_T 3BZ2_T 3PRR_T 4FBY_g 3A0H_t 3A0B_T ....
Probab=23.95 E-value=91 Score=16.61 Aligned_cols=6 Identities=0% Similarity=0.130 Sum_probs=2.2
Q ss_pred HHHHHH
Q 047357 198 GSIIVA 203 (219)
Q Consensus 198 ~~ii~~ 203 (219)
|..+++
T Consensus 6 Y~~ll~ 11 (29)
T PF01405_consen 6 YTFLLI 11 (29)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 358
>PF13396 PLDc_N: Phospholipase_D-nuclease N-terminal
Probab=23.93 E-value=64 Score=18.66 Aligned_cols=25 Identities=20% Similarity=0.184 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc
Q 047357 194 KWIVGSIIVALVIAIIFILFYKLSH 218 (219)
Q Consensus 194 k~Il~~ii~~l~~~i~~vi~~k~~~ 218 (219)
.-++++++++++=.++.++|+=+-|
T Consensus 21 ~k~~W~~~i~~~P~iG~i~Yl~~gr 45 (46)
T PF13396_consen 21 SKILWLIVILFFPIIGPILYLIFGR 45 (46)
T ss_pred hhhHHHHHHHHHHHHHHhheEEEeC
Confidence 3456666666677788888874444
No 359
>PF15183 MRAP: Melanocortin-2 receptor accessory protein family
Probab=23.68 E-value=1.2e+02 Score=20.52 Aligned_cols=8 Identities=13% Similarity=0.027 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 047357 197 VGSIIVAL 204 (219)
Q Consensus 197 l~~ii~~l 204 (219)
+|+..+++
T Consensus 42 FWv~LA~F 49 (90)
T PF15183_consen 42 FWVSLAAF 49 (90)
T ss_pred HHHHHHHH
Confidence 34433333
No 360
>PRK12660 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=23.66 E-value=1.2e+02 Score=21.76 Aligned_cols=24 Identities=17% Similarity=0.324 Sum_probs=14.7
Q ss_pred HHH-HHHHHHHHHHHHHHHHHhhcc
Q 047357 195 WIV-GSIIVALVIAIIFILFYKLSH 218 (219)
Q Consensus 195 ~Il-~~ii~~l~~~i~~vi~~k~~~ 218 (219)
+++ .++|.+.+.+..+++++|.++
T Consensus 73 lvLTaIVIg~av~a~lL~l~~r~~~ 97 (114)
T PRK12660 73 IVLTAIVIGFGMTAFLLVLVYRTYK 97 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344 346666666666777777665
No 361
>PRK09458 pspB phage shock protein B; Provisional
Probab=23.62 E-value=1.1e+02 Score=20.23 Aligned_cols=9 Identities=0% Similarity=0.279 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 047357 206 IAIIFILFY 214 (219)
Q Consensus 206 ~~i~~vi~~ 214 (219)
++++.-+|+
T Consensus 14 ~ifVaPiWL 22 (75)
T PRK09458 14 VLFVAPIWL 22 (75)
T ss_pred HHHHHHHHH
Confidence 333333443
No 362
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=23.61 E-value=1e+02 Score=25.11 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q 047357 195 WIVGSIIVALVIAIIFILFYKLS 217 (219)
Q Consensus 195 ~Il~~ii~~l~~~i~~vi~~k~~ 217 (219)
+|+-++|+++++.+.+++...++
T Consensus 189 vilpvvIaliVitl~vf~LvgLy 211 (259)
T PF07010_consen 189 VILPVVIALIVITLSVFTLVGLY 211 (259)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444443
No 363
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.54 E-value=4.6e+02 Score=22.27 Aligned_cols=24 Identities=13% Similarity=0.249 Sum_probs=11.7
Q ss_pred HHHHHchHHHHHHHHHHHHHHHhc
Q 047357 39 YSEIQSGLDDADALIRKMDLEARS 62 (219)
Q Consensus 39 ~~~~~~~l~~a~~~~~~m~~E~~~ 62 (219)
...+...=..++..++.++.+...
T Consensus 84 ~~~~~~~a~~Ik~kL~~~e~~~~~ 107 (297)
T KOG0810|consen 84 VDEIRRRARKIKTKLKALEKENEA 107 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444455555555555443
No 364
>PHA02662 ORF131 putative membrane protein; Provisional
Probab=23.49 E-value=99 Score=25.00 Aligned_cols=11 Identities=9% Similarity=0.060 Sum_probs=6.5
Q ss_pred hcCChhHHHHH
Q 047357 61 RSLQPNVKAML 71 (219)
Q Consensus 61 ~~~~~~~r~~~ 71 (219)
..+|+.+|...
T Consensus 88 ~~Lp~~qK~~i 98 (226)
T PHA02662 88 AELPRADRLAV 98 (226)
T ss_pred HhCCHHHHHHH
Confidence 45777666544
No 365
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=23.47 E-value=2.2e+02 Score=18.57 Aligned_cols=28 Identities=25% Similarity=0.246 Sum_probs=22.5
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 047357 63 LQPNVKAMLLAKLREYKSDLNKLKREFK 90 (219)
Q Consensus 63 ~~~~~r~~~~~k~~~~~~~l~~l~~~~~ 90 (219)
.+|..+..+..++.+|-.+.+.++.-+.
T Consensus 44 ~~~~~k~~lr~k~~eyl~RAE~LK~~l~ 71 (75)
T cd02684 44 TDAQRKEALRQKVLQYVSRAEELKALIA 71 (75)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566778899999999999888887664
No 366
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=23.39 E-value=3.4e+02 Score=21.53 Aligned_cols=24 Identities=17% Similarity=0.270 Sum_probs=17.8
Q ss_pred HHHHHchHHHHHHHHHHHHHHHhc
Q 047357 39 YSEIQSGLDDADALIRKMDLEARS 62 (219)
Q Consensus 39 ~~~~~~~l~~a~~~~~~m~~E~~~ 62 (219)
...+++.|.+++..+...+.++..
T Consensus 98 evrLkrELa~Le~~l~~~~~~~~~ 121 (195)
T PF12761_consen 98 EVRLKRELAELEEKLSKVEQAAES 121 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356777788888888877777765
No 367
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=23.36 E-value=3.5e+02 Score=21.77 Aligned_cols=41 Identities=20% Similarity=0.255 Sum_probs=30.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 047357 53 IRKMDLEARSLQPNVKAMLLAKLREYKSDLNKLKREFKRVS 93 (219)
Q Consensus 53 ~~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~~l~~~~~~~~ 93 (219)
...+...+..+.|..+..|...++.|..++..+.+.++...
T Consensus 105 ~~~Ia~~L~~~~P~~~~~y~~N~~~~~~~L~~l~~~~~~~~ 145 (256)
T PF01297_consen 105 AEAIADALSELDPANKDYYEKNAEKYLKELDELDAEIKEKL 145 (256)
T ss_dssp HHHHHHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333334445777888999999999999999998886553
No 368
>PF11657 Activator-TraM: Transcriptional activator TraM
Probab=23.34 E-value=3.3e+02 Score=20.50 Aligned_cols=11 Identities=27% Similarity=0.652 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 047357 79 KSDLNKLKREF 89 (219)
Q Consensus 79 ~~~l~~l~~~~ 89 (219)
...++.++.++
T Consensus 45 ~~~l~~fk~el 55 (144)
T PF11657_consen 45 QEQLDQFKEEL 55 (144)
T ss_pred HHHHHHHHHHH
Confidence 33344444443
No 369
>PF11026 DUF2721: Protein of unknown function (DUF2721); InterPro: IPR021279 This family is conserved in bacteria. The function is not known.
Probab=23.27 E-value=3e+02 Score=20.03 Aligned_cols=20 Identities=20% Similarity=0.243 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHH-HHHHHHH
Q 047357 180 KKVLSSMSRRMTR-NKWIVGS 199 (219)
Q Consensus 180 ~~~l~~m~rr~~~-dk~Il~~ 199 (219)
.+-++.+.||..- ++.|.++
T Consensus 49 ~~el~~L~rR~~li~~ai~~~ 69 (130)
T PF11026_consen 49 RRELRILRRRARLIRRAITLA 69 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 5556667777443 4444443
No 370
>PRK06007 fliF flagellar MS-ring protein; Reviewed
Probab=23.10 E-value=1e+02 Score=28.50 Aligned_cols=22 Identities=14% Similarity=0.156 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc
Q 047357 197 VGSIIVALVIAIIFILFYKLSH 218 (219)
Q Consensus 197 l~~ii~~l~~~i~~vi~~k~~~ 218 (219)
.++++++++++++|++|.++.|
T Consensus 442 ~~~~~~l~~l~l~~~v~rp~~~ 463 (542)
T PRK06007 442 KLAAGALLILILIFFVLRPRLR 463 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4444555555556666665554
No 371
>MTH00260 ATP8 ATP synthase F0 subunit 8; Provisional
Probab=22.86 E-value=1.8e+02 Score=17.73 Aligned_cols=21 Identities=5% Similarity=0.047 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 047357 194 KWIVGSIIVALVIAIIFILFY 214 (219)
Q Consensus 194 k~Il~~ii~~l~~~i~~vi~~ 214 (219)
.+++++.+.++++++...+|+
T Consensus 9 W~~l~~~f~~~~~~~~~~~~~ 29 (53)
T MTH00260 9 WLTAMIIFWFILLIFASSMWW 29 (53)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445554444444444444554
No 372
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=22.78 E-value=4.7e+02 Score=22.14 Aligned_cols=47 Identities=17% Similarity=0.223 Sum_probs=26.9
Q ss_pred HchHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047357 43 QSGLDDADALIRKMDLEARSLQPNVKAMLLAKLREYKSDLNKLKREFKRV 92 (219)
Q Consensus 43 ~~~l~~a~~~~~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~~l~~~~~~~ 92 (219)
-..++++++.++.++.++-..+.+ ....++..++..+-.+++.+...
T Consensus 153 ~~~le~i~~~~~~ie~~l~~~~~~---~~l~~l~~l~~~l~~lr~~l~~~ 199 (322)
T COG0598 153 FPVLEQIEDELEAIEDQLLASTTN---EELERLGELRRSLVYLRRALAPL 199 (322)
T ss_pred HHHHHHHHHHHHHHHHHHhcCccH---HHHHHHHHHHHHHHHHHHHHHhH
Confidence 334444445555555444444433 56677777777777777766543
No 373
>PRK10633 hypothetical protein; Provisional
Probab=22.58 E-value=1.5e+02 Score=19.90 Aligned_cols=7 Identities=0% Similarity=0.017 Sum_probs=2.6
Q ss_pred HHHHhhc
Q 047357 211 ILFYKLS 217 (219)
Q Consensus 211 vi~~k~~ 217 (219)
++...+|
T Consensus 63 ~~Vk~vF 69 (80)
T PRK10633 63 LMVKFIF 69 (80)
T ss_pred HHHHHHh
Confidence 3333333
No 374
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=22.49 E-value=4.3e+02 Score=21.53 Aligned_cols=44 Identities=9% Similarity=0.199 Sum_probs=24.6
Q ss_pred HHHHHHHHhcCCh-hHHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q 047357 53 IRKMDLEARSLQP-NVKAMLLAKLREYKSDLNKLKREFKRVSSSD 96 (219)
Q Consensus 53 ~~~m~~E~~~~~~-~~r~~~~~k~~~~~~~l~~l~~~~~~~~~~~ 96 (219)
++-+.-++..+.. ..+......+..+++++.++.++.+.....+
T Consensus 99 ~~~Lq~~Lk~V~tde~k~~~~~ei~k~r~e~~~ml~evK~~~E~y 143 (230)
T PF03904_consen 99 QDILQDELKDVDTDELKNIAQNEIKKVREENKSMLQEVKQSHEKY 143 (230)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444432 3345566666777777777777766655443
No 375
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=22.47 E-value=4.9e+02 Score=25.65 Aligned_cols=57 Identities=21% Similarity=0.332 Sum_probs=39.9
Q ss_pred HHHHHHHHchHHHHHHHHHHHHHHHh------cCChhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047357 36 KEKYSEIQSGLDDADALIRKMDLEAR------SLQPNVKAMLLAKLREYKSDLNKLKREFKRV 92 (219)
Q Consensus 36 ~~~~~~~~~~l~~a~~~~~~m~~E~~------~~~~~~r~~~~~k~~~~~~~l~~l~~~~~~~ 92 (219)
......++..+..++..++..+.-+. ..|+.....-..++..+..++..++..+..+
T Consensus 810 ~~e~~rL~K~l~kl~~ei~~~~~kL~n~~F~~KAP~~vve~e~~kl~~~~~~~~~l~~~l~~l 872 (874)
T PRK05729 810 EAELARLEKELAKLEKEIERVEKKLSNEGFVAKAPEEVVEKEREKLAEYEEKLAKLKERLARL 872 (874)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456666666666666666665544 3566777788888888888888888877654
No 376
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=22.30 E-value=1.1e+02 Score=25.15 Aligned_cols=20 Identities=20% Similarity=0.265 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHhhcc
Q 047357 199 SIIVALVIAIIFILFYKLSH 218 (219)
Q Consensus 199 ~ii~~l~~~i~~vi~~k~~~ 218 (219)
+++++|+++-.++=|.|+.|
T Consensus 230 ~vlG~ll~lr~~i~YikVrr 249 (262)
T KOG4812|consen 230 LVLGLLLFLRGFINYIKVRR 249 (262)
T ss_pred HHHHHHHHHHHHHhHHHHhh
Confidence 35555666666666666654
No 377
>PF09813 Coiled-coil_56: Coiled-coil domain-containing protein 56; InterPro: IPR018628 Members of this family of proteins have no known function.
Probab=22.24 E-value=1.4e+02 Score=20.88 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 047357 191 TRNKWIVGSIIVALVIAIIFIL 212 (219)
Q Consensus 191 ~~dk~Il~~ii~~l~~~i~~vi 212 (219)
+...++..++|+.++++|+.+-
T Consensus 48 R~rN~~Tgl~L~~~v~gIY~YT 69 (100)
T PF09813_consen 48 RRRNLLTGLALGAFVVGIYAYT 69 (100)
T ss_pred hhhhHHHHHHHHHHHHHHHhhe
Confidence 3444555555555656655443
No 378
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=22.22 E-value=8.3e+02 Score=24.77 Aligned_cols=39 Identities=10% Similarity=0.230 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchh----hHhhhccCCC
Q 047357 68 KAMLLAKLREYKSDLNKLKREFKRVSSSD----AHEELLESGK 106 (219)
Q Consensus 68 r~~~~~k~~~~~~~l~~l~~~~~~~~~~~----~r~~L~~~~~ 106 (219)
+..+...+..|..+-+.+.+.+..+.... +-..+||...
T Consensus 908 ~kkle~e~~~~~~e~~~~~k~v~~l~~k~~wi~~ek~~fgk~g 950 (1174)
T KOG0933|consen 908 RKKLEHEVTKLESEKANARKEVEKLLKKHEWIGDEKRLFGKKG 950 (1174)
T ss_pred HHHHHhHHHHhhhhHHHHHHHHHHHHHhccchhHHHHhhcCCC
Confidence 44555566665555555555555444332 3457887754
No 379
>cd07670 BAR_SNX18 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 18. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=22.00 E-value=2.9e+02 Score=22.18 Aligned_cols=55 Identities=22% Similarity=0.393 Sum_probs=40.5
Q ss_pred HHHHHchHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 047357 39 YSEIQSGLDDADALIRKMDLEARSLQPNVKAMLLAKLREYKSDLNKLKREFKRVS 93 (219)
Q Consensus 39 ~~~~~~~l~~a~~~~~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~~l~~~~~~~~ 93 (219)
...++..++....-.++|+--+..+..-....++.-+..|+.++..+-..|..+.
T Consensus 7 ~~~VE~kid~f~~F~k~Md~sv~~l~~~~~e~~kk~~~~~KkEyqkiG~af~~Ls 61 (207)
T cd07670 7 LQDVESRIDGFKAFTKKMDESVLQLNHTANEFARKQVTGFKKEYQKVGQSFKGLS 61 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 3567788888888888888777766544445666677788888888888777664
No 380
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=21.87 E-value=2.3e+02 Score=18.14 Aligned_cols=27 Identities=19% Similarity=0.308 Sum_probs=22.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 047357 64 QPNVKAMLLAKLREYKSDLNKLKREFK 90 (219)
Q Consensus 64 ~~~~r~~~~~k~~~~~~~l~~l~~~~~ 90 (219)
+|..+..+..++.+|....+.++..+.
T Consensus 47 ~~~~~~~~~~k~~eyl~raE~lk~~~~ 73 (77)
T smart00745 47 DSKRREAVKAKAAEYLDRAEEIKKSLL 73 (77)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356678899999999999999998775
No 381
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=21.85 E-value=9e+02 Score=25.04 Aligned_cols=45 Identities=16% Similarity=0.130 Sum_probs=22.6
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhh
Q 047357 126 RINQSGERIRESRRVMLETEELGISIVEDLNQQRETLLNSRNKLH 170 (219)
Q Consensus 126 ~l~~~~~~L~~s~~~~~ete~~g~~i~~~L~~Qre~L~~~~~~~~ 170 (219)
.+......|..+.....+-........+....|+..+..+...+.
T Consensus 585 ~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~ 629 (1317)
T KOG0612|consen 585 DLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELK 629 (1317)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555555555555555544444333
No 382
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=21.67 E-value=2.3e+02 Score=18.16 Aligned_cols=23 Identities=17% Similarity=0.279 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 047357 70 MLLAKLREYKSDLNKLKREFKRV 92 (219)
Q Consensus 70 ~~~~k~~~~~~~l~~l~~~~~~~ 92 (219)
.....+.....++++++...+++
T Consensus 31 ~~e~~i~~~~~~l~~I~~n~kW~ 53 (71)
T PF10779_consen 31 ANEKDIKNLNKQLEKIKSNTKWI 53 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666667777777776665
No 383
>PF11353 DUF3153: Protein of unknown function (DUF3153); InterPro: IPR021499 This family of proteins with unknown function appear to be restricted to Cyanobacteria. Some members are annotated as membrane proteins however this cannot be confirmed.
Probab=21.67 E-value=1.2e+02 Score=24.01 Aligned_cols=18 Identities=22% Similarity=0.578 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 047357 194 KWIVGSIIVALVIAIIFI 211 (219)
Q Consensus 194 k~Il~~ii~~l~~~i~~v 211 (219)
.+.+.+++++++++++++
T Consensus 184 ~lgiG~v~I~~l~~~~~~ 201 (209)
T PF11353_consen 184 PLGIGTVLIVLLILLGFL 201 (209)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334433444333444333
No 384
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=21.64 E-value=5e+02 Score=21.96 Aligned_cols=97 Identities=12% Similarity=0.128 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhh--cCCCChhHHHHHHHHHHchHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHH
Q 047357 3 EVFEGYERQYCELSTNLSRKCSSA--SLLPDGDQKKEKYSEIQSGLDDADALIRKMDLEARSLQPNVKAMLLAKLREYKS 80 (219)
Q Consensus 3 ~~f~~ye~e~~~~~~~i~~~l~~~--~~~~~~~~~~~~~~~~~~~l~~a~~~~~~m~~E~~~~~~~~r~~~~~k~~~~~~ 80 (219)
..+.+=+.|+..+-.++.+.-..- +.+ +--+.+=+++++...|++++.+++-|..-+-.-.... ++|...+.--..
T Consensus 82 ~~l~dRetEI~eLksQL~RMrEDWIEEEC-HRVEAQLALKEARkEIkQLkQvieTmrssL~ekDkGi-QKYFvDINiQN~ 159 (305)
T PF15290_consen 82 NRLHDRETEIDELKSQLARMREDWIEEEC-HRVEAQLALKEARKEIKQLKQVIETMRSSLAEKDKGI-QKYFVDINIQNK 159 (305)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhH-HHHHhhhhhhHh
Q ss_pred HHHHHHHHHHhhcchhhHhhh
Q 047357 81 DLNKLKREFKRVSSSDAHEEL 101 (219)
Q Consensus 81 ~l~~l~~~~~~~~~~~~r~~L 101 (219)
.++.|-.+..-++...-|+++
T Consensus 160 KLEsLLqsMElAq~g~~rde~ 180 (305)
T PF15290_consen 160 KLESLLQSMELAQSGSLRDEG 180 (305)
T ss_pred HHHHHHHHHHHHHhccccccC
No 385
>PRK15041 methyl-accepting chemotaxis protein I; Provisional
Probab=21.63 E-value=6.3e+02 Score=23.17 Aligned_cols=22 Identities=14% Similarity=0.108 Sum_probs=10.5
Q ss_pred HHHHHHHHchHHHHHHHHHHHH
Q 047357 36 KEKYSEIQSGLDDADALIRKMD 57 (219)
Q Consensus 36 ~~~~~~~~~~l~~a~~~~~~m~ 57 (219)
......++...+++...++.++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~ 109 (554)
T PRK15041 88 AELMQSASISLKQAEKNWADYE 109 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3444445555555554444443
No 386
>CHL00106 petL cytochrome b6/f complex subunit VI
Probab=21.60 E-value=1.5e+02 Score=16.04 Aligned_cols=21 Identities=14% Similarity=-0.085 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 047357 195 WIVGSIIVALVIAIIFILFYK 215 (219)
Q Consensus 195 ~Il~~ii~~l~~~i~~vi~~k 215 (219)
++-|+++++..+++..++|..
T Consensus 4 iisYf~~L~~a~~~t~~lfig 24 (31)
T CHL00106 4 ITSYFGFLLAALTITSGLFIG 24 (31)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344565555555555555543
No 387
>PRK09609 hypothetical protein; Provisional
Probab=21.54 E-value=1e+02 Score=26.33 Aligned_cols=30 Identities=23% Similarity=0.458 Sum_probs=19.7
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHhhccC
Q 047357 190 MTRNKWIVGS-IIVALVIAIIFILFYKLSHH 219 (219)
Q Consensus 190 ~~~dk~Il~~-ii~~l~~~i~~vi~~k~~~~ 219 (219)
-.+||+.+++ ++.-.++++++++|.||+-|
T Consensus 203 fi~~~~~~~~l~~~G~~~m~if~~~~rf~~k 233 (312)
T PRK09609 203 FIKNKRSLMILIISGFILMIIFVIWARFFIK 233 (312)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3467766654 33445677788888888754
No 388
>TIGR02978 phageshock_pspC phage shock protein C. All members of this protein family are the phage shock protein PspC. These proteins contain a PspC domain, as do other members of the larger family of proteins described by Pfam model pfam04024. The phage shock regulon is restricted to the Proteobacteria and somewhat sparsely distributed there. It is expressed, under positive control of a sigma-54-dependent transcription factor, PspF, which binds and is modulated by PspA. Stresses that induce the psp regulon include phage secretin overexpression, ethanol, heat shock, and protein export defects.
Probab=21.51 E-value=2e+02 Score=20.87 Aligned_cols=33 Identities=15% Similarity=0.217 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHchHHHHHHHHHHHHHHHhcCCh
Q 047357 33 DQKKEKYSEIQSGLDDADALIRKMDLEARSLQP 65 (219)
Q Consensus 33 ~~~~~~~~~~~~~l~~a~~~~~~m~~E~~~~~~ 65 (219)
+.....+..++..++.++.-+.+||..+-+-..
T Consensus 80 ~~~~~~l~~~~~~~~~~e~Rl~~mE~yVTS~~f 112 (121)
T TIGR02978 80 QSPRQALREVKREFRDLERRLRNMERYVTSDTF 112 (121)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 445677889999999999999999987766543
No 389
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=21.49 E-value=54 Score=23.66 Aligned_cols=19 Identities=26% Similarity=0.628 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 047357 197 VGSIIVALVIAIIFILFYK 215 (219)
Q Consensus 197 l~~ii~~l~~~i~~vi~~k 215 (219)
...|+++|+..++++.||+
T Consensus 65 avcI~l~~~s~~lLI~WYR 83 (118)
T PF10856_consen 65 AVCILLICISAILLIFWYR 83 (118)
T ss_pred HHHHHHHHHHHHhheeehh
Confidence 3446666666666666654
No 390
>PF07240 Turandot: Stress-inducible humoral factor Turandot; InterPro: IPR010825 This family consists of several Drosophila species specific Turandot proteins. The Turandot A (TotA) gene encodes a humoral factor, which is secreted from the fat body and accumulates in the body fluids. TotA is strongly induced upon bacterial challenge, as well as by other types of stress such as high temperature, mechanical pressure, dehydration, UV irradiation, and oxidative agents. It is also upregulated during metamorphosis and at high age. Flies that overexpress TotA show prolonged survival and retain normal activity at otherwise lethal temperatures. Although TotA is only induced by severe stress, it responds to a much wider range of stimuli than heat shock genes such as hsp70 or immune genes such as Cecropin A1 [].
Probab=21.48 E-value=2.7e+02 Score=18.96 Aligned_cols=37 Identities=19% Similarity=0.283 Sum_probs=23.5
Q ss_pred chHHHHHHHHHHHHHHHhc--CChhHHHHHHHHHHHHHH
Q 047357 44 SGLDDADALIRKMDLEARS--LQPNVKAMLLAKLREYKS 80 (219)
Q Consensus 44 ~~l~~a~~~~~~m~~E~~~--~~~~~r~~~~~k~~~~~~ 80 (219)
.++..+.+++.-++....+ +++..++.+..-+++|+.
T Consensus 7 tK~rni~eLi~fY~ky~~~~~L~~~~r~~~d~~i~~y~~ 45 (85)
T PF07240_consen 7 TKIRNIQELIAFYEKYSPRLPLTPQDRQRIDRFIRRYKE 45 (85)
T ss_pred HHHhhHHHHHHHHHHcCccCCCCHHHHHHHHHHHHHHHH
Confidence 3455566667777777777 446666666666666653
No 391
>PF11877 DUF3397: Protein of unknown function (DUF3397); InterPro: IPR024515 This family of bacterial proteins is currently functionally uncharacterised.
Probab=21.38 E-value=2.7e+02 Score=19.82 Aligned_cols=33 Identities=18% Similarity=0.389 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047357 182 VLSSMSRRMTRNKWIVGSIIVALVIAIIFILFY 214 (219)
Q Consensus 182 ~l~~m~rr~~~dk~Il~~ii~~l~~~i~~vi~~ 214 (219)
-+.-+........++-+.+++++++++++.++.
T Consensus 46 ~i~~ls~~~~~~s~lpy~~l~~~ll~i~l~~~~ 78 (116)
T PF11877_consen 46 SIHLLSNNIFGHSFLPYLLLVLLLLAIILAIYQ 78 (116)
T ss_pred HHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777778888888888887776654
No 392
>PRK09731 putative general secretion pathway protein YghD; Provisional
Probab=21.24 E-value=1.5e+02 Score=23.11 Aligned_cols=23 Identities=9% Similarity=0.342 Sum_probs=10.3
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHH
Q 047357 191 TRNKWIVGS-IIVALVIAIIFILF 213 (219)
Q Consensus 191 ~~dk~Il~~-ii~~l~~~i~~vi~ 213 (219)
-+++-++.+ +++++++++.+++|
T Consensus 34 ~REq~ll~~~g~vL~l~i~Y~~iW 57 (178)
T PRK09731 34 PREKGMLLAAVVFLFSVGYYVLIW 57 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555544 44444444444443
No 393
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=20.92 E-value=7.2e+02 Score=23.54 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 047357 70 MLLAKLREYKSDLNKLKREFKRVS 93 (219)
Q Consensus 70 ~~~~k~~~~~~~l~~l~~~~~~~~ 93 (219)
.+..++.+-+...+.|++.|..++
T Consensus 485 ~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 485 RLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666777777777777776665
No 394
>PHA02955 hypothetical protein; Provisional
Probab=20.92 E-value=1.2e+02 Score=24.40 Aligned_cols=27 Identities=11% Similarity=0.078 Sum_probs=15.4
Q ss_pred HHHchHHHHHHHHHHHHHHHhcCChhHHHHHHHH
Q 047357 41 EIQSGLDDADALIRKMDLEARSLQPNVKAMLLAK 74 (219)
Q Consensus 41 ~~~~~l~~a~~~~~~m~~E~~~~~~~~r~~~~~k 74 (219)
++.-.++.+.+.+ ..+|+.+|......
T Consensus 62 sf~lli~a~~Et~-------~~Lp~~qk~~ia~~ 88 (213)
T PHA02955 62 NFQLLIEALIETI-------ENFPEKEQKEIAAD 88 (213)
T ss_pred HHHHHHHHHHHHH-------HhCCHHHHHHHHHH
Confidence 4444455554444 46888877666433
No 395
>KOG3838 consensus Mannose lectin ERGIC-53, involved in glycoprotein traffic [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.79 E-value=4.2e+02 Score=23.66 Aligned_cols=36 Identities=31% Similarity=0.338 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchh--hHhhhc
Q 047357 67 VKAMLLAKLREYKSDLNKLKREFKRVSSSD--AHEELL 102 (219)
Q Consensus 67 ~r~~~~~k~~~~~~~l~~l~~~~~~~~~~~--~r~~L~ 102 (219)
.+++|.+....++.+|+.=+.+|++-.... +-+++|
T Consensus 273 ek~kyqeEfe~~q~elek~k~efkk~hpd~~~e~ee~~ 310 (497)
T KOG3838|consen 273 EKAKYQEEFEWAQLELEKRKDEFKKSHPDAQGEGEELF 310 (497)
T ss_pred HHHHHHHHHHHHHHHHhhhHhhhccCCchhhcchhhhh
Confidence 345677777777777777777777665542 334454
No 396
>PRK10299 PhoPQ regulatory protein; Provisional
Probab=20.53 E-value=1.3e+02 Score=17.96 Aligned_cols=6 Identities=17% Similarity=0.440 Sum_probs=2.3
Q ss_pred HHHHHH
Q 047357 199 SIIVAL 204 (219)
Q Consensus 199 ~ii~~l 204 (219)
+++++|
T Consensus 11 ~iv~~C 16 (47)
T PRK10299 11 VVVLAC 16 (47)
T ss_pred HHHHHH
Confidence 333333
No 397
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=20.46 E-value=2e+02 Score=16.82 Aligned_cols=14 Identities=7% Similarity=0.150 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHH
Q 047357 198 GSIIVALVIAIIFI 211 (219)
Q Consensus 198 ~~ii~~l~~~i~~v 211 (219)
|++.+++++++++.
T Consensus 11 Yg~t~~~l~~l~~~ 24 (46)
T PF04995_consen 11 YGVTALVLAGLIVW 24 (46)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444333
No 398
>PRK10772 cell division protein FtsL; Provisional
Probab=20.44 E-value=2.1e+02 Score=20.41 Aligned_cols=26 Identities=19% Similarity=0.263 Sum_probs=13.7
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 047357 184 SSMSRRMTR-NKWIVGSIIVALVIAII 209 (219)
Q Consensus 184 ~~m~rr~~~-dk~Il~~ii~~l~~~i~ 209 (219)
+-|..-... +|+.+.+++++++-+++
T Consensus 13 ~iI~~Dl~~~~kl~l~Ll~~vv~SAl~ 39 (108)
T PRK10772 13 GVIGDDLLRNGKLPLCLFIAVIVSAVT 39 (108)
T ss_pred HHHHHHHHHcChHHHHHHHHHHHHHHH
Confidence 334444444 67666655555544444
No 399
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=20.26 E-value=5.1e+02 Score=21.56 Aligned_cols=89 Identities=21% Similarity=0.290 Sum_probs=49.9
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhhhcCCC-ChhHHHHHHHHHHchHHHHHHHHHHHHHHHhcCCh------hHHHHHHHH
Q 047357 2 SEVFEGYERQYCELSTNLSRKCSSASLLP-DGDQKKEKYSEIQSGLDDADALIRKMDLEARSLQP------NVKAMLLAK 74 (219)
Q Consensus 2 s~~f~~ye~e~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~~~~~l~~a~~~~~~m~~E~~~~~~------~~r~~~~~k 74 (219)
+.++..|+.++..+-..|......-.... .-+.-...+..+...+.........++.++..+-+ ..+..+..+
T Consensus 46 ~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~ 125 (312)
T PF00038_consen 46 SRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQ 125 (312)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHH
Confidence 34677777777777766665544332220 11222344555666666666666666666655432 124566677
Q ss_pred HHHHHHHHHHHHHHHH
Q 047357 75 LREYKSDLNKLKREFK 90 (219)
Q Consensus 75 ~~~~~~~l~~l~~~~~ 90 (219)
+...+.++.-++..+.
T Consensus 126 i~~L~eEl~fl~~~he 141 (312)
T PF00038_consen 126 IQSLKEELEFLKQNHE 141 (312)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhh
Confidence 7777777766655443
No 400
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=20.22 E-value=4.9e+02 Score=25.09 Aligned_cols=32 Identities=13% Similarity=0.335 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHchHHHHHHHHHHHHHHHhcCC
Q 047357 33 DQKKEKYSEIQSGLDDADALIRKMDLEARSLQ 64 (219)
Q Consensus 33 ~~~~~~~~~~~~~l~~a~~~~~~m~~E~~~~~ 64 (219)
+.....+.+++..+++++..++..+.++...-
T Consensus 225 ~~p~e~~~~l~~~i~~l~~~~~~~~~~l~~~~ 256 (759)
T PF01496_consen 225 GTPEEAIKELEEEIEELEKELEELEEELKKLL 256 (759)
T ss_dssp GG-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567788899999999999988888877543
No 401
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=20.13 E-value=2.4e+02 Score=21.61 Aligned_cols=25 Identities=8% Similarity=0.248 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHH
Q 047357 50 DALIRKMDLEARSLQPNVKAMLLAK 74 (219)
Q Consensus 50 ~~~~~~m~~E~~~~~~~~r~~~~~k 74 (219)
++-+++++.+++.+|++++++..+-
T Consensus 4 ~efL~~L~~~L~~lp~~e~~e~l~~ 28 (181)
T PF08006_consen 4 NEFLNELEKYLKKLPEEEREEILEY 28 (181)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3557777778888888766555433
No 402
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=20.06 E-value=1.5e+02 Score=22.01 Aligned_cols=27 Identities=15% Similarity=0.272 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 047357 192 RNKWIVGSIIVALVIAIIFILFYKLSH 218 (219)
Q Consensus 192 ~dk~Il~~ii~~l~~~i~~vi~~k~~~ 218 (219)
.-+++++++.++++++.=+++|.++.+
T Consensus 110 ~~Rvllgl~~al~vlvAEv~l~~~y~~ 136 (142)
T PF11712_consen 110 PYRVLLGLFGALLVLVAEVVLYIRYLR 136 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345666655555555555555555543
Done!