Query 047357
Match_columns 219
No_of_seqs 118 out of 801
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 18:08:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047357.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047357hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qyw_A Vesicle transport throu 99.8 1.8E-20 6E-25 132.1 11.4 90 1-90 13-102 (102)
2 1vcs_A Vesicle transport throu 99.8 2.7E-20 9.1E-25 131.3 8.3 93 1-94 3-95 (102)
3 3onj_A T-snare VTI1; helix, HA 99.8 5.4E-19 1.8E-23 123.5 11.5 90 3-93 1-93 (97)
4 2nps_C Vesicle transport throu 99.8 2.3E-19 7.9E-24 120.9 7.6 80 115-194 2-81 (81)
5 1gl2_C VTI1B, vesicle transpor 99.6 6E-15 2.1E-19 95.1 6.9 64 125-188 2-65 (65)
6 1n7s_C SNAP-25A; neuronal snar 99.3 3.4E-11 1.2E-15 80.4 9.9 67 122-188 13-79 (79)
7 1nhl_A Synaptosomal-associated 99.0 7.7E-10 2.6E-14 68.4 6.2 52 135-186 3-54 (54)
8 3b5n_C Protein transport prote 98.6 3.5E-07 1.2E-11 59.2 9.1 61 128-188 8-68 (70)
9 1l4a_C S-SNAP25 fusion protein 98.5 1.1E-07 3.6E-12 63.7 5.4 64 124-187 19-82 (83)
10 3hd7_B Syntaxin-1A; membrane p 98.0 0.00022 7.7E-09 50.2 13.1 76 131-206 20-98 (109)
11 3hd7_A Vesicle-associated memb 97.9 0.00072 2.5E-08 45.9 12.9 71 131-201 4-74 (91)
12 2kog_A Vesicle-associated memb 97.1 0.00041 1.4E-08 49.5 3.8 84 130-213 31-114 (119)
13 2nps_D Syntaxin-6; vesicle fus 97.1 0.0029 9.9E-08 42.0 7.6 66 125-190 12-77 (82)
14 1gl2_D Syntaxin 8, vesicle tra 97.0 0.003 1E-07 40.0 6.8 61 127-187 4-64 (65)
15 3b5n_D Protein transport prote 96.6 0.009 3.1E-07 37.6 6.9 56 130-185 8-63 (64)
16 1sfc_D Protein (SNAP-25B), pro 96.6 0.0088 3E-07 40.1 7.1 62 127-188 24-85 (87)
17 1n7s_D SNAP-25A; neuronal snar 96.5 0.016 5.4E-07 36.7 7.6 57 130-186 8-64 (66)
18 1l4a_D S-SNAP25 fusion protein 96.2 0.013 4.3E-07 39.4 5.9 60 129-188 27-86 (87)
19 3hd7_A Vesicle-associated memb 96.1 0.095 3.2E-06 35.3 10.2 78 127-210 7-87 (91)
20 1dn1_B Syntaxin 1A, syntaxin b 94.0 1.2 4.2E-05 35.8 12.6 64 132-195 200-266 (267)
21 2c5k_T Syntaxin TLG1, T-snare 89.8 3.3 0.00011 27.9 9.4 86 1-90 3-92 (95)
22 2xhe_B Syntaxin1; exocytosis, 89.5 4.1 0.00014 32.8 10.8 57 131-187 216-272 (279)
23 1fjk_A Cardiac phospholamban; 84.7 1.6 5.6E-05 24.8 3.9 26 187-212 24-49 (52)
24 3c98_B Syntaxin-1A; protein co 84.3 1.4 4.8E-05 34.9 5.1 60 125-184 205-264 (279)
25 1jth_B Syntaxin 1A; coiled-coi 83.9 6.4 0.00022 25.1 8.4 58 132-189 10-67 (77)
26 3vkg_A Dynein heavy chain, cyt 82.6 59 0.002 35.3 24.9 102 115-216 2011-2119(3245)
27 2kog_A Vesicle-associated memb 82.4 2.2 7.5E-05 30.0 4.8 82 126-213 34-118 (119)
28 2nps_B Syntaxin 13, vesicle-as 79.5 9.1 0.00031 24.0 7.7 58 133-190 7-64 (71)
29 2k9j_B Integrin beta-3; transm 79.1 2.5 8.5E-05 24.0 3.4 20 198-217 15-34 (43)
30 2knc_B Integrin beta-3; transm 78.9 2 6.9E-05 27.9 3.4 21 197-217 15-35 (79)
31 3ghg_A Fibrinogen alpha chain; 77.2 12 0.0004 32.9 8.6 26 3-28 53-78 (562)
32 1gl2_B Syntaxin 7; membrane pr 76.1 11 0.00038 23.1 7.8 53 133-185 10-62 (65)
33 1sfc_A VAMP 2, protein (synapt 73.8 17 0.00059 24.3 8.6 64 129-192 27-90 (96)
34 3b5n_B Protein SSO1; snare com 72.9 14 0.00049 22.9 8.4 56 132-187 10-65 (69)
35 1t3j_A Mitofusin 1; coiled coi 72.2 19 0.00065 24.1 6.9 52 38-89 41-94 (96)
36 1n7s_B Syntaxin 1A; neuronal s 72.2 15 0.0005 22.7 8.4 54 132-185 12-65 (68)
37 3b5n_A Synaptobrevin homolog 1 71.8 14 0.00048 22.3 8.6 58 132-189 2-59 (61)
38 3etw_A Adhesin A; antiparallel 68.4 27 0.00093 24.3 10.5 88 4-95 10-97 (119)
39 1m1j_B Fibrinogen beta chain; 67.1 38 0.0013 29.4 9.5 47 3-51 89-135 (464)
40 1yod_A Water-solublized phosph 66.7 11 0.00037 19.1 4.3 25 188-212 4-28 (30)
41 1n7s_A Vesicle-associated memb 63.4 22 0.00076 21.5 8.7 58 132-189 4-61 (63)
42 1deq_A Fibrinogen (alpha chain 63.3 46 0.0016 28.0 8.9 27 3-29 56-82 (390)
43 2jee_A YIIU; FTSZ, septum, coi 62.5 29 0.00098 22.5 9.2 21 40-60 9-29 (81)
44 2l6w_A Beta-type platelet-deri 66.1 1.6 5.6E-05 24.1 0.0 9 211-219 27-35 (39)
45 1pi7_A VPU protein, U ORF prot 61.8 11 0.00038 20.4 3.4 11 207-217 23-33 (36)
46 2k1k_A Ephrin type-A receptor 61.0 13 0.00044 20.4 3.6 6 213-218 32-37 (38)
47 2l8s_A Integrin alpha-1; trans 60.6 12 0.0004 22.3 3.6 9 199-207 16-24 (54)
48 2nps_A VAMP-4, vesicle-associa 59.2 30 0.001 21.7 5.9 60 132-191 8-67 (74)
49 3mq9_A Bone marrow stromal ant 57.8 52 0.0018 28.1 8.9 18 70-87 401-418 (471)
50 2jwa_A Receptor tyrosine-prote 57.8 12 0.00041 21.3 3.1 12 204-215 25-36 (44)
51 1sfc_B Protein (syntaxin 1A), 57.6 35 0.0012 21.9 8.4 56 132-187 21-76 (83)
52 3ghg_A Fibrinogen alpha chain; 56.4 60 0.002 28.6 8.7 43 47-90 113-155 (562)
53 3i00_A HIP-I, huntingtin-inter 55.3 48 0.0017 23.1 6.7 53 32-88 10-62 (120)
54 1jdm_A Sarcolipin; helix, memb 55.2 12 0.00042 19.0 2.6 13 198-210 12-24 (31)
55 1m1j_C Fibrinogen gamma chain; 54.8 1E+02 0.0034 26.3 9.9 24 3-26 27-50 (409)
56 2k1a_A Integrin alpha-IIB; sin 54.8 18 0.00063 20.3 3.6 17 198-214 16-32 (42)
57 3tul_A Cell invasion protein S 53.1 61 0.0021 23.4 9.4 55 39-93 71-127 (158)
58 4dnd_A Syntaxin-10, SYN10; str 52.9 57 0.002 23.0 11.5 59 3-61 27-91 (130)
59 1hs7_A Syntaxin VAM3; UP-and-D 52.0 50 0.0017 22.1 10.2 74 10-90 13-88 (97)
60 3ol1_A Vimentin; structural ge 51.4 57 0.002 22.5 8.4 21 1-21 11-31 (119)
61 2kv5_A FST, putative uncharact 50.0 22 0.00076 18.7 3.2 23 196-218 4-26 (33)
62 1v64_A Nucleolar transcription 50.0 56 0.0019 22.0 7.3 55 51-105 43-97 (108)
63 1l4a_A Synaptobrevin; snare, s 49.6 20 0.00068 23.0 3.7 58 132-189 15-72 (80)
64 2jee_A YIIU; FTSZ, septum, coi 48.0 53 0.0018 21.2 8.1 21 1-21 3-24 (81)
65 1afo_A Glycophorin A; integral 45.4 29 0.00099 19.0 3.3 19 195-213 14-32 (40)
66 1t3j_A Mitofusin 1; coiled coi 45.2 66 0.0023 21.5 6.9 11 53-63 49-59 (96)
67 2avr_X Adhesion A; antiparalle 45.0 75 0.0026 22.1 10.3 82 4-94 10-96 (119)
68 2iub_A CORA, divalent cation t 44.6 1.3E+02 0.0045 24.7 18.8 51 40-93 191-241 (363)
69 3lay_A Zinc resistance-associa 43.8 55 0.0019 24.4 5.8 22 69-90 116-137 (175)
70 2lx0_A Membrane fusion protein 42.9 32 0.0011 17.3 3.9 19 196-214 9-27 (32)
71 3gwk_C SAG1039, putative uncha 42.6 66 0.0022 20.7 6.7 33 31-63 9-41 (98)
72 3ghg_B Fibrinogen beta chain; 42.5 1.3E+02 0.0043 26.1 8.6 50 3-54 84-133 (461)
73 3ajm_A Programmed cell death p 42.5 1.1E+02 0.0039 23.4 11.3 75 10-90 94-168 (213)
74 3vou_A ION transport 2 domain 42.2 59 0.002 23.0 5.8 39 176-214 8-46 (148)
75 1q90_R Cytochrome B6-F complex 41.0 52 0.0018 19.0 5.0 18 185-202 8-25 (49)
76 4afl_A P29ING4, inhibitor of g 40.7 78 0.0027 21.0 8.0 24 3-26 4-27 (104)
77 1sz9_A PCF11 protein; RNA poly 40.0 98 0.0034 22.0 6.6 58 11-69 4-61 (144)
78 2wwb_C SEC61BETA, protein tran 39.3 9 0.00031 25.7 0.8 24 195-218 72-95 (96)
79 2jo1_A Phospholemman; FXYD1, N 37.3 36 0.0012 21.3 3.2 13 203-215 27-39 (72)
80 3zbh_A ESXA; unknown function, 37.3 79 0.0027 20.1 7.8 60 31-90 10-73 (99)
81 1gl2_A Endobrevin; membrane pr 37.1 70 0.0024 19.4 6.3 44 132-175 9-52 (65)
82 3nmd_A CGMP dependent protein 34.5 86 0.003 19.7 6.4 24 70-93 44-67 (72)
83 1urq_A M-tomosyn isoform; tran 34.2 79 0.0027 19.2 7.4 54 133-186 5-58 (63)
84 2p2u_A HOST-nuclease inhibitor 33.2 1.4E+02 0.0049 21.8 7.7 68 32-104 15-82 (171)
85 4ioe_A Secreted protein ESXB; 33.0 92 0.0032 19.6 9.1 53 31-83 10-66 (93)
86 3arc_L Photosystem II reaction 33.0 59 0.002 17.4 3.3 17 198-214 19-35 (37)
87 3na7_A HP0958; flagellar bioge 33.0 1.7E+02 0.0059 22.7 14.0 137 39-185 13-150 (256)
88 2rpa_A Katanin P60 ATPase-cont 32.8 96 0.0033 19.7 6.9 44 43-86 29-73 (78)
89 1pfi_A Major coat protein of P 32.6 44 0.0015 18.6 2.7 7 212-218 38-44 (46)
90 2v66_B Nuclear distribution pr 32.1 1.2E+02 0.0042 20.7 10.9 14 127-140 61-74 (111)
91 2vs0_A Virulence factor ESXA; 31.8 98 0.0034 19.5 6.7 33 31-63 7-39 (97)
92 4a5x_A MITD1, MIT domain-conta 31.7 1E+02 0.0036 19.8 6.8 29 64-92 55-83 (86)
93 2ww9_C Protein transport prote 31.5 28 0.00096 22.8 2.2 24 194-217 62-85 (87)
94 1v54_D Cytochrome C oxidase su 31.4 47 0.0016 24.0 3.6 24 194-217 79-102 (147)
95 2jp3_A FXYD domain-containing 30.7 35 0.0012 21.1 2.4 10 205-214 30-39 (67)
96 2q67_A Potassium channel prote 30.5 98 0.0034 20.9 5.1 37 178-214 7-43 (114)
97 4fla_A Regulation of nuclear P 30.5 1.5E+02 0.0052 21.3 7.9 61 33-93 68-134 (152)
98 1yke_B RNA polymerase II holoe 30.4 1.5E+02 0.0052 21.3 8.3 93 1-93 1-112 (151)
99 4dnd_A Syntaxin-10, SYN10; str 29.1 1.5E+02 0.0051 20.8 6.7 54 39-92 33-93 (130)
100 3ghg_C Fibrinogen gamma chain; 29.1 1.5E+02 0.0052 25.2 6.9 26 3-28 27-52 (411)
101 1svf_B Protein (fusion glycopr 28.9 36 0.0012 18.5 2.0 23 162-184 14-36 (38)
102 2nps_B Syntaxin 13, vesicle-as 28.8 88 0.003 19.2 4.2 30 32-61 1-30 (71)
103 3hd7_B Syntaxin-1A; membrane p 28.5 1.4E+02 0.0047 20.1 11.2 47 160-206 56-102 (109)
104 3oa7_A Head morphogenesis prot 28.3 1.3E+02 0.0043 22.9 5.5 46 48-94 27-72 (206)
105 1wfd_A Hypothetical protein 15 28.3 1.3E+02 0.0043 19.6 7.2 44 49-92 38-82 (93)
106 1ez3_A Syntaxin-1A; three heli 28.2 1.4E+02 0.0048 20.2 9.6 25 37-61 54-78 (127)
107 1ykh_B RNA polymerase II holoe 28.1 1.6E+02 0.0053 20.7 10.2 93 1-93 1-112 (132)
108 3p8c_F ABL interactor 2; actin 27.8 1.2E+02 0.0041 22.2 5.2 40 138-177 60-99 (159)
109 1m1j_A Fibrinogen alpha subuni 27.8 3E+02 0.01 23.8 10.0 89 3-94 54-153 (491)
110 2d4y_A HAP1, flagellar HOOK-as 27.4 2.9E+02 0.0098 23.5 11.2 60 31-91 62-121 (463)
111 2v4h_A NF-kappa-B essential mo 27.2 1.5E+02 0.0051 20.2 9.9 53 39-91 26-80 (110)
112 3fav_A ESAT-6-like protein ESX 27.0 1.3E+02 0.0044 19.4 8.4 62 31-92 8-73 (101)
113 3arc_I Photosystem II reaction 26.9 69 0.0023 17.3 2.8 13 192-204 3-15 (38)
114 2v6x_A Vacuolar protein sortin 26.2 1.3E+02 0.0044 19.0 6.5 29 63-91 51-79 (85)
115 2lch_A Protein OR38; structura 25.7 1.3E+02 0.0043 20.0 4.9 29 1-29 4-32 (113)
116 1fio_A SSO1 protein; four heli 25.6 2E+02 0.0068 21.0 9.8 86 4-89 6-107 (196)
117 2y69_D Cytochrome C oxidase su 25.3 69 0.0023 23.7 3.6 23 195-217 102-124 (169)
118 3fav_B ESAT-6, 6 kDa early sec 25.0 1.3E+02 0.0046 18.9 8.0 62 31-92 6-71 (94)
119 1v54_J Cytochrome C oxidase po 24.9 1.2E+02 0.004 18.2 4.1 24 191-214 26-49 (59)
120 3u1c_A Tropomyosin alpha-1 cha 24.5 1.6E+02 0.0054 19.5 7.8 28 35-62 21-48 (101)
121 4h22_A Leucine-rich repeat fli 24.3 1.7E+02 0.0057 19.7 5.7 17 43-59 36-52 (103)
122 2y69_J Cytochrome C oxidase po 24.1 1.2E+02 0.0039 19.5 4.1 24 191-214 47-70 (80)
123 1q90_L Cytochrome B6F complex 24.0 87 0.003 16.4 3.5 22 195-216 4-25 (32)
124 3iox_A AGI/II, PA; alpha helix 23.4 3.7E+02 0.013 23.4 9.2 12 8-19 7-18 (497)
125 1u2m_A Histone-like protein HL 23.4 42 0.0014 23.7 2.1 23 4-26 31-53 (143)
126 2gsm_B Cytochrome C oxidase su 23.2 77 0.0026 25.1 3.8 21 197-217 39-59 (262)
127 2zxe_G FXYD10, phospholemman-l 22.0 42 0.0014 21.2 1.6 8 205-212 32-39 (74)
128 2w1k_A Putative sortase; pilus 21.9 19 0.00065 28.6 0.0 21 194-214 224-244 (252)
129 4ev6_A Magnesium transport pro 21.7 3.2E+02 0.011 22.0 19.3 49 41-92 168-216 (339)
130 3vmt_A Monofunctional glycosyl 21.2 28 0.00096 27.8 0.8 24 186-209 27-50 (263)
131 2lhr_A Iron-regulated surface 20.6 1.6E+02 0.0055 18.2 5.6 24 61-84 37-60 (78)
132 2odv_A Plectin 1, HD1; plakin 20.5 3E+02 0.01 21.2 7.5 27 3-29 11-37 (235)
133 3tnu_B Keratin, type II cytosk 20.4 2.2E+02 0.0075 19.6 8.2 53 41-93 33-95 (129)
No 1
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=99.84 E-value=1.8e-20 Score=132.13 Aligned_cols=90 Identities=24% Similarity=0.336 Sum_probs=85.6
Q ss_pred CchhHHHHHHHHHHHHHHHHHhhhhhcCCCChhHHHHHHHHHHchHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHH
Q 047357 1 MSEVFEGYERQYCELSTNLSRKCSSASLLPDGDQKKEKYSEIQSGLDDADALIRKMDLEARSLQPNVKAMLLAKLREYKS 80 (219)
Q Consensus 1 Ms~~f~~ye~e~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~m~~E~~~~~~~~r~~~~~k~~~~~~ 80 (219)
||++|++||++|+.++.+|..+|++++...++++|+..+..++..|++|++++++|++|++++|++.|..|..|++.|+.
T Consensus 13 mSelFe~YE~df~~l~~~i~~kl~~i~~~~~~e~rk~~i~~ie~~ldEA~eLl~qMelE~r~~p~s~R~~~~~klr~Yk~ 92 (102)
T 2qyw_A 13 SSEHFEKLHEIFRGLLEDLQGVPERLLGTAGTEEKKKLVRDFDEKQQEANETLAEMEEELRYAPLTFRNPMMSKLRNYRK 92 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999765367999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 047357 81 DLNKLKREFK 90 (219)
Q Consensus 81 ~l~~l~~~~~ 90 (219)
+++.++++|+
T Consensus 93 dL~~lk~elk 102 (102)
T 2qyw_A 93 DLAKLHREVR 102 (102)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHhhcC
Confidence 9999999874
No 2
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=99.82 E-value=2.7e-20 Score=131.29 Aligned_cols=93 Identities=30% Similarity=0.573 Sum_probs=89.4
Q ss_pred CchhHHHHHHHHHHHHHHHHHhhhhhcCCCChhHHHHHHHHHHchHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHH
Q 047357 1 MSEVFEGYERQYCELSTNLSRKCSSASLLPDGDQKKEKYSEIQSGLDDADALIRKMDLEARSLQPNVKAMLLAKLREYKS 80 (219)
Q Consensus 1 Ms~~f~~ye~e~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~m~~E~~~~~~~~r~~~~~k~~~~~~ 80 (219)
+|++|++||++|..+..+|..+|++++.. +|++|+..+..++..|++|+++|++|++|++++||+.|..|..|++.|+.
T Consensus 3 sSelFe~YE~df~~l~~~i~~kl~~i~~~-~geerk~~i~~ie~~l~EA~ell~qMelE~r~~p~~~R~~~~~klr~Yk~ 81 (102)
T 1vcs_A 3 SGSSGEGYEQDFAVLTAEITSKIARVPRL-PPDEKKQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQ 81 (102)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHHHHHGGGS-CTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhcc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHhHHHHHHHHHHHHH
Confidence 57999999999999999999999999988 89999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcc
Q 047357 81 DLNKLKREFKRVSS 94 (219)
Q Consensus 81 ~l~~l~~~~~~~~~ 94 (219)
+++.++++|+++..
T Consensus 82 dL~~lk~elk~~~~ 95 (102)
T 1vcs_A 82 EMGKLETDFKRSRI 95 (102)
T ss_dssp HHHHHHHHTHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988653
No 3
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=99.80 E-value=5.4e-19 Score=123.47 Aligned_cols=90 Identities=20% Similarity=0.312 Sum_probs=87.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhcCCCChhHHHHHHHHHHchHHHHHHHHHHHHHHHhcC--ChhHHHHHHHHHHHHHH
Q 047357 3 EVFEGYERQYCELSTNLSRKCSSASLLPDGDQKKEKYSEIQSGLDDADALIRKMDLEARSL--QPNVKAMLLAKLREYKS 80 (219)
Q Consensus 3 ~~f~~ye~e~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~m~~E~~~~--~~~~r~~~~~k~~~~~~ 80 (219)
++|++||++|+.++.+|..+|++++.. +|++|+..+..++..+++|.+++.+|++|++++ ||+.|..|..|++.|+.
T Consensus 1 ~lF~~YE~df~~~~~~i~~~l~~~~~~-~ge~Rk~~i~~ie~~ldEA~ell~qMelE~~~~~~p~~~R~~~~~klr~Yk~ 79 (97)
T 3onj_A 1 SLLISYESDFKTTLEQAKASLAEAPSQ-PLSQRNTTLKHVEQQQDELFDLLDQMDVEVNNSIGDASERATYKAKLREWKK 79 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHGGGS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhcc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999988 899999999999999999999999999999999 99999999999999999
Q ss_pred HHHH-HHHHHHhhc
Q 047357 81 DLNK-LKREFKRVS 93 (219)
Q Consensus 81 ~l~~-l~~~~~~~~ 93 (219)
+++. ++++|+++.
T Consensus 80 dl~~~lk~~lk~l~ 93 (97)
T 3onj_A 80 TIQSDIKRPLQSLV 93 (97)
T ss_dssp HHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 9999 999998764
No 4
>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=99.79 E-value=2.3e-19 Score=120.92 Aligned_cols=80 Identities=30% Similarity=0.579 Sum_probs=76.3
Q ss_pred HHHHHHHhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhHhHHHHHHHHHHHHHHHHHHH
Q 047357 115 EQRERLAMSVERINQSGERIRESRRVMLETEELGISIVEDLNQQRETLLNSRNKLHGVDDAISKSKKVLSSMSRRMTRNK 194 (219)
Q Consensus 115 ~~r~~l~~~~~~l~~~~~~L~~s~~~~~ete~~g~~i~~~L~~Qre~L~~~~~~~~~i~~~l~~s~~~l~~m~rr~~~dk 194 (219)
++|++|+.+++.+++++++|.+|.+++.|||++|.+|+.+|..|||+|.++.+++++++++++.|.++|+.|.||+.+||
T Consensus 2 ~qR~~Ll~~t~~L~rt~~~L~~s~r~~~ETE~iG~~il~~L~~QRE~l~~~~~~l~~~d~~l~~s~k~l~~M~rr~~~nK 81 (81)
T 2nps_C 2 SMRAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLRETDANLGKSSRILTGMLRRIIQNR 81 (81)
T ss_dssp TTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred cHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhCC
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999886
No 5
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=99.57 E-value=6e-15 Score=95.14 Aligned_cols=64 Identities=36% Similarity=0.654 Sum_probs=58.2
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhHhHHHHHHHHHHHHH
Q 047357 125 ERINQSGERIRESRRVMLETEELGISIVEDLNQQRETLLNSRNKLHGVDDAISKSKKVLSSMSR 188 (219)
Q Consensus 125 ~~l~~~~~~L~~s~~~~~ete~~g~~i~~~L~~Qre~L~~~~~~~~~i~~~l~~s~~~l~~m~r 188 (219)
+.+++++++|.+|.+++.|||++|.+|+.+|..|||+|.+++++++++++++++|.++|+.|.|
T Consensus 2 ~rL~~t~~~l~~s~ri~~ETE~iG~~~l~~L~~QREql~~t~~~l~~~d~~l~~s~k~L~~m~R 65 (65)
T 1gl2_C 2 SHMNRATQSIERSHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILRSMSR 65 (65)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhHHHhHHhHHHHHHHHHHhhcC
Confidence 4688999999999999999999999999999999999999999999999999999999999976
No 6
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A
Probab=99.28 E-value=3.4e-11 Score=80.37 Aligned_cols=67 Identities=18% Similarity=0.283 Sum_probs=63.7
Q ss_pred hhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhHhHHHHHHHHHHHHH
Q 047357 122 MSVERINQSGERIRESRRVMLETEELGISIVEDLNQQRETLLNSRNKLHGVDDAISKSKKVLSSMSR 188 (219)
Q Consensus 122 ~~~~~l~~~~~~L~~s~~~~~ete~~g~~i~~~L~~Qre~L~~~~~~~~~i~~~l~~s~~~l~~m~r 188 (219)
......+++++++.++.+++.||+++|..|+..|..|||+|.++...++++++++++|.++|+.|.+
T Consensus 13 ~~~~~~~~s~~s~~~~l~~a~Ete~~G~~Tl~~L~~Q~Eql~r~~~~ld~i~~~l~~a~k~L~~m~k 79 (79)
T 1n7s_C 13 RADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQDMKEAEKNLKDLGK 79 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHhHHHHHHHHHhhhcC
Confidence 4677889999999999999999999999999999999999999999999999999999999999863
No 7
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1
Probab=99.01 E-value=7.7e-10 Score=68.36 Aligned_cols=52 Identities=21% Similarity=0.423 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhHhHHHHHHHHHHH
Q 047357 135 RESRRVMLETEELGISIVEDLNQQRETLLNSRNKLHGVDDAISKSKKVLSSM 186 (219)
Q Consensus 135 ~~s~~~~~ete~~g~~i~~~L~~Qre~L~~~~~~~~~i~~~l~~s~~~l~~m 186 (219)
.++.+++.|++++|..++..|..|||+|.++.+.++++++++++|.++|+.|
T Consensus 3 ~~~~~l~~ese~~g~~Tl~~L~~QgEql~r~~~~ld~i~~~l~~a~k~L~~m 54 (54)
T 1nhl_A 3 RRILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLDQINKDMRETEKTLTEL 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHhHHHHHHhHHHHHHHHHhcC
Confidence 5688999999999999999999999999999999999999999999998764
No 8
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=98.62 E-value=3.5e-07 Score=59.17 Aligned_cols=61 Identities=16% Similarity=0.225 Sum_probs=56.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhHhHHHHHHHHHHHHH
Q 047357 128 NQSGERIRESRRVMLETEELGISIVEDLNQQRETLLNSRNKLHGVDDAISKSKKVLSSMSR 188 (219)
Q Consensus 128 ~~~~~~L~~s~~~~~ete~~g~~i~~~L~~Qre~L~~~~~~~~~i~~~l~~s~~~l~~m~r 188 (219)
+.+..+-.++-+++.|++++|..++..|..|+|+|.++...++.++.++..|.+.++.|..
T Consensus 8 ~esl~STrr~L~~a~e~e~~g~~Tl~~L~~QgEqL~rtE~~ld~i~~~~k~aek~l~~Lk~ 68 (70)
T 3b5n_C 8 QSSVASTRNTLKMAQDAERAGMNTLGMLGHQSEQLNNVEGNLDLMKVQNKVADEKVAELKK 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4556777889999999999999999999999999999999999999999999999998864
No 9
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=98.55 E-value=1.1e-07 Score=63.68 Aligned_cols=64 Identities=23% Similarity=0.275 Sum_probs=57.2
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhHhHHHHHHHHHHHH
Q 047357 124 VERINQSGERIRESRRVMLETEELGISIVEDLNQQRETLLNSRNKLHGVDDAISKSKKVLSSMS 187 (219)
Q Consensus 124 ~~~l~~~~~~L~~s~~~~~ete~~g~~i~~~L~~Qre~L~~~~~~~~~i~~~l~~s~~~l~~m~ 187 (219)
....+.+..+..++-+++.+++++|..++..|..|+|+|.++...++.|+.++..|.+.++.|.
T Consensus 19 ~~~~~esl~STrr~l~l~~es~~~g~~Tl~~L~~QgEQL~rie~~ld~I~~dl~~Aek~L~~L~ 82 (83)
T 1l4a_C 19 NQVTDDSLESTRRMLNMCEESKEAGIRTLVMLDEQGEQLDRIEEGLDQINQDMKDAEKNLEGME 82 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGCTTC--
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4445677889999999999999999999999999999999999999999999999999887664
No 10
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=98.02 E-value=0.00022 Score=50.17 Aligned_cols=76 Identities=13% Similarity=0.099 Sum_probs=59.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhHhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 047357 131 GERIRESRRVMLETEELGISIVEDLNQQRETLLNSRNKLHGVDDAISKSKKVLSS---MSRRMTRNKWIVGSIIVALVI 206 (219)
Q Consensus 131 ~~~L~~s~~~~~ete~~g~~i~~~L~~Qre~L~~~~~~~~~i~~~l~~s~~~l~~---m~rr~~~dk~Il~~ii~~l~~ 206 (219)
...+.+..+.+.|..++-.+...-...|.+.+.++..++..+..++..+++-+.. ..++.++-+|+++++++++++
T Consensus 20 ~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~~rkk~~i~l~~~~i~~~ 98 (109)
T 3hd7_B 20 HSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKIMIIICCVILGI 98 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcceehHHHHHHHHH
Confidence 3567777788888999999999999999999999999999999999999988854 445555555555544444333
No 11
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=97.86 E-value=0.00072 Score=45.93 Aligned_cols=71 Identities=10% Similarity=0.138 Sum_probs=56.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047357 131 GERIRESRRVMLETEELGISIVEDLNQQRETLLNSRNKLHGVDDAISKSKKVLSSMSRRMTRNKWIVGSII 201 (219)
Q Consensus 131 ~~~L~~s~~~~~ete~~g~~i~~~L~~Qre~L~~~~~~~~~i~~~l~~s~~~l~~m~rr~~~dk~Il~~ii 201 (219)
++.|...+..++|+..+-.+-.+.+-+..|.|....++.++..+.-..=.+.-+.+.|++.-..+=+++++
T Consensus 4 ~d~l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~~~A~~l~rkmwwkn~K~~iii 74 (91)
T 3hd7_A 4 MRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIIL 74 (91)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777788889999999999999999999999999999998888777777777777777766644333333
No 12
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=97.09 E-value=0.00041 Score=49.52 Aligned_cols=84 Identities=12% Similarity=0.195 Sum_probs=61.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047357 130 SGERIRESRRVMLETEELGISIVEDLNQQRETLLNSRNKLHGVDDAISKSKKVLSSMSRRMTRNKWIVGSIIVALVIAII 209 (219)
Q Consensus 130 ~~~~L~~s~~~~~ete~~g~~i~~~L~~Qre~L~~~~~~~~~i~~~l~~s~~~l~~m~rr~~~dk~Il~~ii~~l~~~i~ 209 (219)
+.+.|...+..++|+..+-.+-.+.+-+..|.|....++.+++...-..=.+.-+.+.|+++-.++-+++++++++++++
T Consensus 31 ~~d~l~~vq~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~L~~~S~~F~k~A~kl~rkmwwkn~K~~iii~~iv~iii 110 (119)
T 2kog_A 31 SNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIIL 110 (119)
T ss_dssp SCSHHHHSSHHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCSCCCSSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777888888889999999999999999999999988887776666666777777776666555554444444444
Q ss_pred HHHH
Q 047357 210 FILF 213 (219)
Q Consensus 210 ~vi~ 213 (219)
++++
T Consensus 111 ~iIi 114 (119)
T 2kog_A 111 IIII 114 (119)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 3333
No 13
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=97.06 E-value=0.0029 Score=42.03 Aligned_cols=66 Identities=14% Similarity=0.115 Sum_probs=56.6
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhHhHHHHHHHHHHHHHHH
Q 047357 125 ERINQSGERIRESRRVMLETEELGISIVEDLNQQRETLLNSRNKLHGVDDAISKSKKVLSSMSRRM 190 (219)
Q Consensus 125 ~~l~~~~~~L~~s~~~~~ete~~g~~i~~~L~~Qre~L~~~~~~~~~i~~~l~~s~~~l~~m~rr~ 190 (219)
..+..+...|+.....+.....+|.+|-.+|..|.+.|..+..+++.+...|..+++-+..+.++.
T Consensus 12 ~~~~eQD~~Ld~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~~~~~~ 77 (82)
T 2nps_D 12 NMGRMQDEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSHMT 77 (82)
T ss_dssp ------CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 345666778999999999999999999999999999999999999999999999999999888764
No 14
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=96.98 E-value=0.003 Score=39.95 Aligned_cols=61 Identities=11% Similarity=0.291 Sum_probs=50.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhHhHHHHHHHHHHHH
Q 047357 127 INQSGERIRESRRVMLETEELGISIVEDLNQQRETLLNSRNKLHGVDDAISKSKKVLSSMS 187 (219)
Q Consensus 127 l~~~~~~L~~s~~~~~ete~~g~~i~~~L~~Qre~L~~~~~~~~~i~~~l~~s~~~l~~m~ 187 (219)
+..+...|+.....+....++|.+|-.+|..|.+.|..+..+++.+...+..+++-+..+.
T Consensus 4 ~~eqD~~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~l~~~~~rl~~l~ 64 (65)
T 1gl2_D 4 MQEQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVTLVD 64 (65)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4566678899999999999999999999999999999999999999999999988776654
No 15
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}
Probab=96.63 E-value=0.009 Score=37.63 Aligned_cols=56 Identities=13% Similarity=0.220 Sum_probs=49.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhHhHHHHHHHHHH
Q 047357 130 SGERIRESRRVMLETEELGISIVEDLNQQRETLLNSRNKLHGVDDAISKSKKVLSS 185 (219)
Q Consensus 130 ~~~~L~~s~~~~~ete~~g~~i~~~L~~Qre~L~~~~~~~~~i~~~l~~s~~~l~~ 185 (219)
....|+....++.....+|.++..++..|.+.|.++..+++.++..+..+++-|.+
T Consensus 8 ~D~nLd~l~~~~~rlk~ma~~mg~Eid~QN~~ldrI~~k~d~~d~ri~~~~~Rl~~ 63 (64)
T 3b5n_D 8 IDRNLDQIQQVSNRLKKMALTTGKELDSQQKRLNNIEESTDDLDINLHMNTNRLAG 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34578888888999999999999999999999999999999999999999876654
No 16
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=96.61 E-value=0.0088 Score=40.12 Aligned_cols=62 Identities=10% Similarity=0.181 Sum_probs=54.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhHhHHHHHHHHHHHHH
Q 047357 127 INQSGERIRESRRVMLETEELGISIVEDLNQQRETLLNSRNKLHGVDDAISKSKKVLSSMSR 188 (219)
Q Consensus 127 l~~~~~~L~~s~~~~~ete~~g~~i~~~L~~Qre~L~~~~~~~~~i~~~l~~s~~~l~~m~r 188 (219)
..++...|+.....+.....+|.++-.+|..|.+.|.++..+++.++..+..+++-++.+.+
T Consensus 24 e~eqD~~Ld~Ls~~v~rLk~la~~ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~~~~rl~~ll~ 85 (87)
T 1sfc_D 24 ENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKMLG 85 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhh
Confidence 34455688888899999999999999999999999999999999999999999988877654
No 17
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=96.52 E-value=0.016 Score=36.66 Aligned_cols=57 Identities=9% Similarity=0.198 Sum_probs=51.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhHhHHHHHHHHHHH
Q 047357 130 SGERIRESRRVMLETEELGISIVEDLNQQRETLLNSRNKLHGVDDAISKSKKVLSSM 186 (219)
Q Consensus 130 ~~~~L~~s~~~~~ete~~g~~i~~~L~~Qre~L~~~~~~~~~i~~~l~~s~~~l~~m 186 (219)
+...|+.....+.....+|.++-.+|..|.+.|.++..+++.+...+..+++-++.+
T Consensus 8 qD~~Ld~L~~~v~~lk~la~~ig~El~~Qn~~Ld~l~~~~d~~~~~l~~~~~rl~~l 64 (66)
T 1n7s_D 8 MDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKM 64 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 446788888889999999999999999999999999999999999999998777654
No 18
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=96.17 E-value=0.013 Score=39.36 Aligned_cols=60 Identities=10% Similarity=0.224 Sum_probs=52.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhHhHHHHHHHHHHHHH
Q 047357 129 QSGERIRESRRVMLETEELGISIVEDLNQQRETLLNSRNKLHGVDDAISKSKKVLSSMSR 188 (219)
Q Consensus 129 ~~~~~L~~s~~~~~ete~~g~~i~~~L~~Qre~L~~~~~~~~~i~~~l~~s~~~l~~m~r 188 (219)
++...|+.....+.....+|.++-.+|..|.+.|.++..+++.++..+..+++-++.+.+
T Consensus 27 eqD~~Ld~ls~~l~rLk~mA~~mg~Eld~Qn~~LD~i~~~~D~~~~rl~~~n~r~~kll~ 86 (87)
T 1l4a_D 27 DMENNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQQKAESNESRIDEANKKATKLLK 86 (87)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHHCC-
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345677888888888999999999999999999999999999999999999887776543
No 19
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=96.15 E-value=0.095 Score=35.30 Aligned_cols=78 Identities=15% Similarity=0.259 Sum_probs=48.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHH---HHHHHHHHhhHHHHHhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047357 127 INQSGERIRESRRVMLETEELGI---SIVEDLNQQRETLLNSRNKLHGVDDAISKSKKVLSSMSRRMTRNKWIVGSIIVA 203 (219)
Q Consensus 127 l~~~~~~L~~s~~~~~ete~~g~---~i~~~L~~Qre~L~~~~~~~~~i~~~l~~s~~~l~~m~rr~~~dk~Il~~ii~~ 203 (219)
+.+....+++...++.+..+--. +-++.|....+.|........ ..|+++=+.|--+-++=++|+.+++++
T Consensus 7 l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~------~~A~~l~rkmwwkn~K~~iii~~iv~~ 80 (91)
T 3hd7_A 7 LQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFE------TSAAKLKRKYWWKNLKMMIILGVICAI 80 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555554444433222 335667777777766554444 466777788999999999998887777
Q ss_pred HHHHHHH
Q 047357 204 LVIAIIF 210 (219)
Q Consensus 204 l~~~i~~ 210 (219)
++++|++
T Consensus 81 il~ii~~ 87 (91)
T 3hd7_A 81 ILIIIIV 87 (91)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6555543
No 20
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=93.97 E-value=1.2 Score=35.80 Aligned_cols=64 Identities=11% Similarity=0.102 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhHhHHHHHHHHH---HHHHHHHHHHH
Q 047357 132 ERIRESRRVMLETEELGISIVEDLNQQRETLLNSRNKLHGVDDAISKSKKVLS---SMSRRMTRNKW 195 (219)
Q Consensus 132 ~~L~~s~~~~~ete~~g~~i~~~L~~Qre~L~~~~~~~~~i~~~l~~s~~~l~---~m~rr~~~dk~ 195 (219)
..+....+.+.|..++=.+...=...|.+.|.++..++..+...+..|..-+. ...++.++.||
T Consensus 200 ~~i~~ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~a~~~v~~~~~~l~kA~~~q~~~rkk~~ 266 (267)
T 1dn1_B 200 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKI 266 (267)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 45666666777777777777778889999999999999999888887776665 33444444444
No 21
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=89.76 E-value=3.3 Score=27.86 Aligned_cols=86 Identities=16% Similarity=0.196 Sum_probs=49.1
Q ss_pred Cc-hhHHHHHHHHHHHHHHHHHhhhhhcCCCC---hhHHHHHHHHHHchHHHHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 047357 1 MS-EVFEGYERQYCELSTNLSRKCSSASLLPD---GDQKKEKYSEIQSGLDDADALIRKMDLEARSLQPNVKAMLLAKLR 76 (219)
Q Consensus 1 Ms-~~f~~ye~e~~~~~~~i~~~l~~~~~~~~---~~~~~~~~~~~~~~l~~a~~~~~~m~~E~~~~~~~~r~~~~~k~~ 76 (219)
|| +=|....++..+-+..+...+..-..+++ ..+-...+.+++..|+.+...+.-++.. ++..=..-+.-+.
T Consensus 3 ~s~DPF~~V~~D~~~ql~~l~~~~~~~~~~~~~~~~~El~~~l~el~e~l~DL~~SI~i~e~~----~~~EI~~Rk~~v~ 78 (95)
T 2c5k_T 3 NSEDPFQQVVKDTKEQLNRINNYITRHNTAGDDDQEEEIQDILKDVEETIVDLDRSIIVMKRD----ENEDVSGREAQVK 78 (95)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHTCCC--CTTHHHHHHHHHHHHHHHHHHHHHHHHHHTS----TTCCCHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----CHHHHHHHHHHHH
Confidence 55 78999999999999999998876533322 1333444555555555555555443322 3322122334445
Q ss_pred HHHHHHHHHHHHHH
Q 047357 77 EYKSDLNKLKREFK 90 (219)
Q Consensus 77 ~~~~~l~~l~~~~~ 90 (219)
+.+..++.++.++.
T Consensus 79 ~l~~~i~~lk~~~~ 92 (95)
T 2c5k_T 79 NIKQQLDALKLRFD 92 (95)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 55557888877764
No 22
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=89.55 E-value=4.1 Score=32.77 Aligned_cols=57 Identities=14% Similarity=0.153 Sum_probs=38.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhHhHHHHHHHHHHHH
Q 047357 131 GERIRESRRVMLETEELGISIVEDLNQQRETLLNSRNKLHGVDDAISKSKKVLSSMS 187 (219)
Q Consensus 131 ~~~L~~s~~~~~ete~~g~~i~~~L~~Qre~L~~~~~~~~~i~~~l~~s~~~l~~m~ 187 (219)
...|....+.+.|..++=.+...-...|.+.|.++..++..+...+..|..-|..-.
T Consensus 216 ~~eI~~Ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~~~~~v~~~~~~l~kA~ 272 (279)
T 2xhe_B 216 HKDIQQLERSLLELHEMFTDMSTLVASQGEMIDRIEFSVEQSHNYVKKATEQVVQAR 272 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTTTSCSSTTCHHHHHHTCCCCC-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666777777777777777777889999999999999999999998887765443
No 23
>1fjk_A Cardiac phospholamban; helix, membrane protein; NMR {Sus scrofa} SCOP: j.37.1.1 PDB: 1fjp_A 2kyv_A 1zll_A 2hyn_A 1n7l_A 2kb7_P 1plp_A
Probab=84.67 E-value=1.6 Score=24.84 Aligned_cols=26 Identities=23% Similarity=0.388 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047357 187 SRRMTRNKWIVGSIIVALVIAIIFIL 212 (219)
Q Consensus 187 ~rr~~~dk~Il~~ii~~l~~~i~~vi 212 (219)
.|+-..+-++=+.+|++|++.|++++
T Consensus 24 arqnlqelfvnfclilicllli~iiv 49 (52)
T 1fjk_A 24 ARQNLQNLFINFCLILIFLLLICIIV 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666777778888877777654
No 24
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=84.26 E-value=1.4 Score=34.87 Aligned_cols=60 Identities=10% Similarity=0.082 Sum_probs=46.2
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhHhHHHHHHHHH
Q 047357 125 ERINQSGERIRESRRVMLETEELGISIVEDLNQQRETLLNSRNKLHGVDDAISKSKKVLS 184 (219)
Q Consensus 125 ~~l~~~~~~L~~s~~~~~ete~~g~~i~~~L~~Qre~L~~~~~~~~~i~~~l~~s~~~l~ 184 (219)
..+......+......+.+..++-.++......|.+.+..+...+..+...+..+..-+.
T Consensus 205 ~~i~~~~~~i~~I~~~i~ei~~~~~~ia~~v~eQ~~~~~~I~~nv~~~~~~v~~~~~el~ 264 (279)
T 3c98_B 205 SEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTK 264 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566678888888888999999999999999999999999998888776665554443
No 25
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=83.89 E-value=6.4 Score=25.11 Aligned_cols=58 Identities=9% Similarity=0.059 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhHhHHHHHHHHHHHHHH
Q 047357 132 ERIRESRRVMLETEELGISIVEDLNQQRETLLNSRNKLHGVDDAISKSKKVLSSMSRR 189 (219)
Q Consensus 132 ~~L~~s~~~~~ete~~g~~i~~~L~~Qre~L~~~~~~~~~i~~~l~~s~~~l~~m~rr 189 (219)
..+....+.+.|..++=.+...-...|.+.+.++..++..+..++..|..-+..=.+.
T Consensus 10 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~ 67 (77)
T 1jth_B 10 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKY 67 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666777788888888888889999999999999999999999999888765553
No 26
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=82.65 E-value=59 Score=35.32 Aligned_cols=102 Identities=13% Similarity=0.153 Sum_probs=69.1
Q ss_pred HHHHHHHhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhHhHHHHHHHHHHHHHHHHH--
Q 047357 115 EQRERLAMSVERINQSGERIRESRRVMLETEELGISIVEDLNQQRETLLNSRNKLHGVDDAISKSKKVLSSMSRRMTR-- 192 (219)
Q Consensus 115 ~~r~~l~~~~~~l~~~~~~L~~s~~~~~ete~~g~~i~~~L~~Qre~L~~~~~~~~~i~~~l~~s~~~l~~m~rr~~~-- 192 (219)
.-|+.+......+..+...|...+..+.+.++-=...-.++..-...-......+..+...+.+|.+++....--..+
T Consensus 2011 Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~ 2090 (3245)
T 3vkg_A 2011 PLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWE 2090 (3245)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHH
Confidence 445666666667778888888888888887776666666666666666777888999999999999999998764332
Q ss_pred HHH-----HHHHHHHHHHHHHHHHHHHhh
Q 047357 193 NKW-----IVGSIIVALVIAIIFILFYKL 216 (219)
Q Consensus 193 dk~-----Il~~ii~~l~~~i~~vi~~k~ 216 (219)
..+ -+-.+++=|+++-+|+.|...
T Consensus 2091 ~~~~~l~~~~~~L~GD~LLaaafisY~G~ 2119 (3245)
T 3vkg_A 2091 QQSENFNTQMSTVVGDVVLASAFLAYIGF 2119 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHcCC
Confidence 111 112344445555566666543
No 27
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=82.37 E-value=2.2 Score=30.01 Aligned_cols=82 Identities=16% Similarity=0.246 Sum_probs=50.0
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHH---HHHHHHHhhHHHHHhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047357 126 RINQSGERIRESRRVMLETEELGIS---IVEDLNQQRETLLNSRNKLHGVDDAISKSKKVLSSMSRRMTRNKWIVGSIIV 202 (219)
Q Consensus 126 ~l~~~~~~L~~s~~~~~ete~~g~~---i~~~L~~Qre~L~~~~~~~~~i~~~l~~s~~~l~~m~rr~~~dk~Il~~ii~ 202 (219)
.+.+....|++...++.+..+--.+ -++.|....+.|....... -..|+++-+.|--+-++=++|+.++++
T Consensus 34 ~l~~vq~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~L~~~S~~F------~k~A~kl~rkmwwkn~K~~iii~~iv~ 107 (119)
T 2kog_A 34 RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQF------ETSAAKLKRKYWWKNLKMMIILGVICA 107 (119)
T ss_dssp HHHHSSHHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCSCCCSSSHHH------HHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555556677777766665543221 1244555555554433322 345667778888888888888888777
Q ss_pred HHHHHHHHHHH
Q 047357 203 ALVIAIIFILF 213 (219)
Q Consensus 203 ~l~~~i~~vi~ 213 (219)
+++++|+++++
T Consensus 108 iii~iIi~~~c 118 (119)
T 2kog_A 108 IILIIIIVYFS 118 (119)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHhhhhee
Confidence 77766666543
No 28
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=79.49 E-value=9.1 Score=23.95 Aligned_cols=58 Identities=7% Similarity=0.120 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhHhHHHHHHHHHHHHHHH
Q 047357 133 RIRESRRVMLETEELGISIVEDLNQQRETLLNSRNKLHGVDDAISKSKKVLSSMSRRM 190 (219)
Q Consensus 133 ~L~~s~~~~~ete~~g~~i~~~L~~Qre~L~~~~~~~~~i~~~l~~s~~~l~~m~rr~ 190 (219)
.+....+.+.|..++=.+...-...|.+.|.++..++..+..++..+..-|..=.+..
T Consensus 7 ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~q 64 (71)
T 2nps_B 7 AIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAAYYQ 64 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566677777788888888899999999999999999999999998886655443
No 29
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=79.11 E-value=2.5 Score=24.04 Aligned_cols=20 Identities=25% Similarity=0.396 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 047357 198 GSIIVALVIAIIFILFYKLS 217 (219)
Q Consensus 198 ~~ii~~l~~~i~~vi~~k~~ 217 (219)
.++.+++++++++++.||++
T Consensus 15 gvi~~ivliGl~lLliwk~~ 34 (43)
T 2k9j_B 15 SVMGAILLIGLAALLIWKLL 34 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444566667777777764
No 30
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=78.94 E-value=2 Score=27.87 Aligned_cols=21 Identities=24% Similarity=0.406 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q 047357 197 VGSIIVALVIAIIFILFYKLS 217 (219)
Q Consensus 197 l~~ii~~l~~~i~~vi~~k~~ 217 (219)
+.++.+++++++++++.||++
T Consensus 15 ~gvi~gilliGllllliwk~~ 35 (79)
T 2knc_B 15 LSVMGAILLIGLAALLIWKLL 35 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344445555666666666653
No 31
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=77.24 E-value=12 Score=32.94 Aligned_cols=26 Identities=4% Similarity=0.069 Sum_probs=22.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhcC
Q 047357 3 EVFEGYERQYCELSTNLSRKCSSASL 28 (219)
Q Consensus 3 ~~f~~ye~e~~~~~~~i~~~l~~~~~ 28 (219)
.+....+++|...+++|.+.+..+..
T Consensus 53 glLdkqErDltkrINELKnqLEdlsK 78 (562)
T 3ghg_A 53 GLIDEVNQDFTNRINKLKNSLFEYQK 78 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred hhHHhhcCcHHHHHHHHHHHHHHHHh
Confidence 46788899999999999999888843
No 32
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=76.15 E-value=11 Score=23.13 Aligned_cols=53 Identities=11% Similarity=0.195 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhHhHHHHHHHHHH
Q 047357 133 RIRESRRVMLETEELGISIVEDLNQQRETLLNSRNKLHGVDDAISKSKKVLSS 185 (219)
Q Consensus 133 ~L~~s~~~~~ete~~g~~i~~~L~~Qre~L~~~~~~~~~i~~~l~~s~~~l~~ 185 (219)
.+....+.+.+..++=.+...=...|.+.|.++..++..+..++..+..-+..
T Consensus 10 ~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~k 62 (65)
T 1gl2_B 10 SIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSR 62 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666777777877877888899999999999999999999999877653
No 33
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=73.82 E-value=17 Score=24.26 Aligned_cols=64 Identities=11% Similarity=0.174 Sum_probs=51.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhHhHHHHHHHHHHHHHHHHH
Q 047357 129 QSGERIRESRRVMLETEELGISIVEDLNQQRETLLNSRNKLHGVDDAISKSKKVLSSMSRRMTR 192 (219)
Q Consensus 129 ~~~~~L~~s~~~~~ete~~g~~i~~~L~~Qre~L~~~~~~~~~i~~~l~~s~~~l~~m~rr~~~ 192 (219)
.+.+.|...+..++|+..+-..-++.+-.-.|.|....++..++...-..=.+.-+.+.|+++-
T Consensus 27 ~~~d~l~~vq~eldeVk~IM~~NI~kvLeRGEkLd~L~dkse~L~~~S~~F~k~A~kl~rkmww 90 (96)
T 1sfc_A 27 TSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWW 90 (96)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457888889999999999999999999999999999999888877766666666666666543
No 34
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=72.91 E-value=14 Score=22.90 Aligned_cols=56 Identities=11% Similarity=0.054 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhHhHHHHHHHHHHHH
Q 047357 132 ERIRESRRVMLETEELGISIVEDLNQQRETLLNSRNKLHGVDDAISKSKKVLSSMS 187 (219)
Q Consensus 132 ~~L~~s~~~~~ete~~g~~i~~~L~~Qre~L~~~~~~~~~i~~~l~~s~~~l~~m~ 187 (219)
..+....+.+.|..++=.+...-...|.+.|.++..++..+..++..+..-+..=.
T Consensus 10 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~ 65 (69)
T 3b5n_B 10 QELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDKAV 65 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777888888888888899999999999999999999999998776543
No 35
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=72.21 E-value=19 Score=24.12 Aligned_cols=52 Identities=15% Similarity=0.266 Sum_probs=28.0
Q ss_pred HHHHHHchHHHHHHHHHHHHHHHhcCChhH--HHHHHHHHHHHHHHHHHHHHHH
Q 047357 38 KYSEIQSGLDDADALIRKMDLEARSLQPNV--KAMLLAKLREYKSDLNKLKREF 89 (219)
Q Consensus 38 ~~~~~~~~l~~a~~~~~~m~~E~~~~~~~~--r~~~~~k~~~~~~~l~~l~~~~ 89 (219)
+...++....+++.-+++|+.|+..+..-. -..+..|......+|+.+...|
T Consensus 41 Lc~~Vd~t~~eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA~~L~~eLe~F~~~y 94 (96)
T 1t3j_A 41 LCQQVDMTQKHLEEEIARLSKEIDQLEKMQNNSKLLRNKAVQLESELENFSKQF 94 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555555555555665555554221 1245566666666666666655
No 36
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=72.16 E-value=15 Score=22.74 Aligned_cols=54 Identities=9% Similarity=0.068 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhHhHHHHHHHHHH
Q 047357 132 ERIRESRRVMLETEELGISIVEDLNQQRETLLNSRNKLHGVDDAISKSKKVLSS 185 (219)
Q Consensus 132 ~~L~~s~~~~~ete~~g~~i~~~L~~Qre~L~~~~~~~~~i~~~l~~s~~~l~~ 185 (219)
..+....+.+.|..++=.+...-...|.+.|.++..++..+..++..|..-+..
T Consensus 12 ~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~k 65 (68)
T 1n7s_B 12 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKK 65 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777778888888888888899999999999999999999999877653
No 37
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=71.80 E-value=14 Score=22.35 Aligned_cols=58 Identities=12% Similarity=0.114 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhHhHHHHHHHHHHHHHH
Q 047357 132 ERIRESRRVMLETEELGISIVEDLNQQRETLLNSRNKLHGVDDAISKSKKVLSSMSRR 189 (219)
Q Consensus 132 ~~L~~s~~~~~ete~~g~~i~~~L~~Qre~L~~~~~~~~~i~~~l~~s~~~l~~m~rr 189 (219)
+.|...+.-++|+..+-..-++.+-...|.|....++..++...-..=.+.-+.+.|+
T Consensus 2 d~l~~vq~~l~evk~iM~~NI~~vl~RgekLd~L~~ks~~L~~~s~~F~~~a~~l~r~ 59 (61)
T 3b5n_A 2 SRTAELQAEIDDTVGIMRDNINKVAERGERLTSIEDKADNLAVSAQGFKRGANRVRKA 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567778888889999999999999999999988888887666655444444555444
No 38
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=68.42 E-value=27 Score=24.34 Aligned_cols=88 Identities=13% Similarity=0.229 Sum_probs=54.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhcCCCChhHHHHHHHHHHchHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHH
Q 047357 4 VFEGYERQYCELSTNLSRKCSSASLLPDGDQKKEKYSEIQSGLDDADALIRKMDLEARSLQPNVKAMLLAKLREYKSDLN 83 (219)
Q Consensus 4 ~f~~ye~e~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~ 83 (219)
.|+..+.+|..+...=+..+..-... .+.....+.+-...-.++..-+..+.-+....- .+..|...+.+|...+.
T Consensus 10 ~l~~Leae~q~L~~~E~qry~~eka~--AE~A~~~La~~~~l~~~i~er~~~i~~~~~~~~--yk~~y~~l~k~Y~~~~k 85 (119)
T 3etw_A 10 ELQALDAEYQNLANQEEARFNEERAQ--ADAARQALAQNEQVYNELSQRAQRLQAEANTRF--YKSQYQELASKYEDALK 85 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCT--THHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccch--HHHHHHHHHHHHHHHHH
Confidence 46777777777777666666554321 233334444444444445555555554433222 24689999999999999
Q ss_pred HHHHHHHhhcch
Q 047357 84 KLKREFKRVSSS 95 (219)
Q Consensus 84 ~l~~~~~~~~~~ 95 (219)
+|..+++.....
T Consensus 86 eLd~~ik~qeki 97 (119)
T 3etw_A 86 KLEAEMEQQKAV 97 (119)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999998776543
No 39
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=67.15 E-value=38 Score=29.43 Aligned_cols=47 Identities=11% Similarity=0.030 Sum_probs=29.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhcCCCChhHHHHHHHHHHchHHHHHH
Q 047357 3 EVFEGYERQYCELSTNLSRKCSSASLLPDGDQKKEKYSEIQSGLDDADA 51 (219)
Q Consensus 3 ~~f~~ye~e~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~a~~ 51 (219)
+.|..|++.++.-+++++..+.++... ..+...++..+...+++.+.
T Consensus 89 D~L~k~q~~V~~~LqeLe~~l~~lsn~--Ts~~~~~i~~Iq~slk~~Q~ 135 (464)
T 1m1j_B 89 TTLLKQEKTVKPVLRDLKDRVAKFSDT--STTMYQYVNMIDNKLVKTQK 135 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhHhHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHhhcccc
Confidence 567889999999999999999888643 22323334444444433333
No 40
>1yod_A Water-solublized phospholamban; protein design, water-soluble, de novo protein; 1.80A {Synthetic}
Probab=66.72 E-value=11 Score=19.11 Aligned_cols=25 Identities=12% Similarity=-0.073 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 047357 188 RRMTRNKWIVGSIIVALVIAIIFIL 212 (219)
Q Consensus 188 rr~~~dk~Il~~ii~~l~~~i~~vi 212 (219)
|+-..+-++=+.+|.+|+..+.+++
T Consensus 4 rqNlQ~LfvNfcLilICllLi~Iiv 28 (30)
T 1yod_A 4 RQNLQNLYINRCLREICQELKEIRA 28 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666777777776666543
No 41
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=63.44 E-value=22 Score=21.52 Aligned_cols=58 Identities=10% Similarity=0.208 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhHhHHHHHHHHHHHHHH
Q 047357 132 ERIRESRRVMLETEELGISIVEDLNQQRETLLNSRNKLHGVDDAISKSKKVLSSMSRR 189 (219)
Q Consensus 132 ~~L~~s~~~~~ete~~g~~i~~~L~~Qre~L~~~~~~~~~i~~~l~~s~~~l~~m~rr 189 (219)
+.|...+.-++|+..+-..-.+.+-...|.|....++..++...-..=.+.-+.+.|+
T Consensus 4 d~l~~v~~~l~ev~~iM~~NI~~vl~RGekLd~L~~ks~~L~~~s~~F~~~a~~l~r~ 61 (63)
T 1n7s_A 4 RRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRK 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5677788888888889999999999999999988888887766654444444444444
No 42
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=63.30 E-value=46 Score=27.99 Aligned_cols=27 Identities=4% Similarity=0.041 Sum_probs=22.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhcCC
Q 047357 3 EVFEGYERQYCELSTNLSRKCSSASLL 29 (219)
Q Consensus 3 ~~f~~ye~e~~~~~~~i~~~l~~~~~~ 29 (219)
.+..+.+++|..-+++|...|..+...
T Consensus 56 g~Ldk~er~~~~rIe~L~~~L~~~s~s 82 (390)
T 1deq_A 56 GLIDEVDQDFTSRINKLRDSLFNYQKN 82 (390)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHh
Confidence 467788899999999999988888653
No 43
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=62.55 E-value=29 Score=22.48 Aligned_cols=21 Identities=14% Similarity=0.280 Sum_probs=8.6
Q ss_pred HHHHchHHHHHHHHHHHHHHH
Q 047357 40 SEIQSGLDDADALIRKMDLEA 60 (219)
Q Consensus 40 ~~~~~~l~~a~~~~~~m~~E~ 60 (219)
..++.++++|-+.+..+..|+
T Consensus 9 eqLE~KIq~avdtI~lLqmEi 29 (81)
T 2jee_A 9 EKLEAKVQQAIDTITLLQMEI 29 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444333
No 44
>2l6w_A Beta-type platelet-derived growth factor receptor; transmembrane helix, receptor tyrosine kinase, heptad repeat membrane protein; NMR {Homo sapiens}
Probab=66.06 E-value=1.6 Score=24.08 Aligned_cols=9 Identities=22% Similarity=0.276 Sum_probs=4.0
Q ss_pred HHHHhhccC
Q 047357 211 ILFYKLSHH 219 (219)
Q Consensus 211 vi~~k~~~~ 219 (219)
+++++|.+|
T Consensus 27 iLi~~w~qK 35 (39)
T 2l6w_A 27 ILIMLWQKK 35 (39)
Confidence 344445443
No 45
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=61.78 E-value=11 Score=20.41 Aligned_cols=11 Identities=18% Similarity=-0.058 Sum_probs=4.7
Q ss_pred HHHHHHHHhhc
Q 047357 207 AIIFILFYKLS 217 (219)
Q Consensus 207 ~i~~vi~~k~~ 217 (219)
.++++-|.|+.
T Consensus 23 tiv~ieYrk~~ 33 (36)
T 1pi7_A 23 SIVIIEGRGGK 33 (36)
T ss_pred HHHHHHHHHHH
Confidence 33344444443
No 46
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=61.00 E-value=13 Score=20.38 Aligned_cols=6 Identities=0% Similarity=0.346 Sum_probs=2.6
Q ss_pred HHhhcc
Q 047357 213 FYKLSH 218 (219)
Q Consensus 213 ~~k~~~ 218 (219)
|+-|.|
T Consensus 32 ~~~~rr 37 (38)
T 2k1k_A 32 VFRSRR 37 (38)
T ss_dssp HHHHCC
T ss_pred HHHeec
Confidence 333444
No 47
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=60.65 E-value=12 Score=22.33 Aligned_cols=9 Identities=11% Similarity=0.176 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 047357 199 SIIVALVIA 207 (219)
Q Consensus 199 ~ii~~l~~~ 207 (219)
++.++++++
T Consensus 16 vl~GLLLL~ 24 (54)
T 2l8s_A 16 AFAGLLLLM 24 (54)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333443333
No 48
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}
Probab=59.16 E-value=30 Score=21.69 Aligned_cols=60 Identities=13% Similarity=0.170 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhHhHHHHHHHHHHHHHHHH
Q 047357 132 ERIRESRRVMLETEELGISIVEDLNQQRETLLNSRNKLHGVDDAISKSKKVLSSMSRRMT 191 (219)
Q Consensus 132 ~~L~~s~~~~~ete~~g~~i~~~L~~Qre~L~~~~~~~~~i~~~l~~s~~~l~~m~rr~~ 191 (219)
+.|...+.-++|+..+-..-++.+-.-.|.|....++..++...-..=.+.-+.+.|+++
T Consensus 8 d~l~~vq~el~ev~~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~~~a~~l~r~~w 67 (74)
T 2nps_A 8 DKIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQMW 67 (74)
T ss_dssp SSSHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556667777778888888888888888888888877766665555555555555543
No 49
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=57.84 E-value=52 Score=28.07 Aligned_cols=18 Identities=17% Similarity=0.348 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 047357 70 MLLAKLREYKSDLNKLKR 87 (219)
Q Consensus 70 ~~~~k~~~~~~~l~~l~~ 87 (219)
.+++++.+++..+.++++
T Consensus 401 ~~~~~~~~~~~~~~~~~~ 418 (471)
T 3mq9_A 401 LLQQELTEAQKGFQDVEA 418 (471)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHH
Confidence 344444444444444433
No 50
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=57.80 E-value=12 Score=21.30 Aligned_cols=12 Identities=25% Similarity=0.681 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHh
Q 047357 204 LVIAIIFILFYK 215 (219)
Q Consensus 204 l~~~i~~vi~~k 215 (219)
+++++++.+|+|
T Consensus 25 vi~~l~~~~~~R 36 (44)
T 2jwa_A 25 VVLGVVFGILIK 36 (44)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHhhee
Confidence 333344444444
No 51
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=57.62 E-value=35 Score=21.90 Aligned_cols=56 Identities=9% Similarity=0.055 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhHhHHHHHHHHHHHH
Q 047357 132 ERIRESRRVMLETEELGISIVEDLNQQRETLLNSRNKLHGVDDAISKSKKVLSSMS 187 (219)
Q Consensus 132 ~~L~~s~~~~~ete~~g~~i~~~L~~Qre~L~~~~~~~~~i~~~l~~s~~~l~~m~ 187 (219)
..+....+.+.|..++=.+...=...|.+.|.++..++..+...+..+..-+..=.
T Consensus 21 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~ 76 (83)
T 1sfc_B 21 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAV 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777888888888888899999999999999999999999988776543
No 52
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=56.37 E-value=60 Score=28.58 Aligned_cols=43 Identities=14% Similarity=0.205 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 047357 47 DDADALIRKMDLEARSLQPNVKAMLLAKLREYKSDLNKLKREFK 90 (219)
Q Consensus 47 ~~a~~~~~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~~l~~~~~ 90 (219)
.+++..+.-|+.++.+.- +....++..|+..+.++..|+.++.
T Consensus 113 ~ELRRrIqyLKekVdnQl-snIrvLQsnLedq~~kIQRLEvDId 155 (562)
T 3ghg_A 113 EDLRSRIEVLKRKVIEKV-QHIQLLQKNVRAQLVDMKRLEVDID 155 (562)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366666777777766543 2334566666666666666666553
No 53
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=55.32 E-value=48 Score=23.07 Aligned_cols=53 Identities=17% Similarity=0.248 Sum_probs=38.6
Q ss_pred hhHHHHHHHHHHchHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHH
Q 047357 32 GDQKKEKYSEIQSGLDDADALIRKMDLEARSLQPNVKAMLLAKLREYKSDLNKLKRE 88 (219)
Q Consensus 32 ~~~~~~~~~~~~~~l~~a~~~~~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~~l~~~ 88 (219)
.++|..+|..+...+..+..-++.+..|.+..+. .|..++.+...++..-+..
T Consensus 10 ~d~rD~~Ie~Lkreie~lk~ele~l~~E~q~~v~----ql~~~i~~Le~eL~e~r~~ 62 (120)
T 3i00_A 10 KDEKDHLIERLYREISGLKAQLENMKTESQRVVL----QLKGHVSELEADLAEQQHL 62 (120)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 3778888888999999988888888888777653 3666666666666665433
No 54
>1jdm_A Sarcolipin; helix, membrane protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=55.18 E-value=12 Score=19.05 Aligned_cols=13 Identities=23% Similarity=0.309 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHH
Q 047357 198 GSIIVALVIAIIF 210 (219)
Q Consensus 198 ~~ii~~l~~~i~~ 210 (219)
+.+|++|++.|++
T Consensus 12 Ft~vLI~vlLi~l 24 (31)
T 1jdm_A 12 FTIVLITVILMWL 24 (31)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4455555555443
No 55
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=54.75 E-value=1e+02 Score=26.29 Aligned_cols=24 Identities=13% Similarity=0.080 Sum_probs=13.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhh
Q 047357 3 EVFEGYERQYCELSTNLSRKCSSA 26 (219)
Q Consensus 3 ~~f~~ye~e~~~~~~~i~~~l~~~ 26 (219)
+.+..|+..+..-+.+++..+.++
T Consensus 27 d~L~k~e~~V~~~l~~LE~~l~el 50 (409)
T 1m1j_C 27 DFFNKYRLTTDGELLEIEGLLQQA 50 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcchhHHHHHHHHHHHH
Confidence 345566665555555555555555
No 56
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=54.75 E-value=18 Score=20.27 Aligned_cols=17 Identities=18% Similarity=0.448 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 047357 198 GSIIVALVIAIIFILFY 214 (219)
Q Consensus 198 ~~ii~~l~~~i~~vi~~ 214 (219)
.++..+++++++.++.|
T Consensus 16 s~l~GLllL~li~~~Lw 32 (42)
T 2k1a_A 16 GVLGGLLLLTILVLAMW 32 (42)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444433333333
No 57
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=53.09 E-value=61 Score=23.37 Aligned_cols=55 Identities=16% Similarity=0.166 Sum_probs=32.9
Q ss_pred HHHHHchHHHHHHHHHHHHHHHhcCChhH--HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 047357 39 YSEIQSGLDDADALIRKMDLEARSLQPNV--KAMLLAKLREYKSDLNKLKREFKRVS 93 (219)
Q Consensus 39 ~~~~~~~l~~a~~~~~~m~~E~~~~~~~~--r~~~~~k~~~~~~~l~~l~~~~~~~~ 93 (219)
+..++..++.++.-+++.+.++..+.|.. -.+...-+.+.+.++.++++.+.++-
T Consensus 71 ~~sA~~~~d~lekKl~~aq~kL~~L~P~~P~Yak~~a~~~q~~~d~~~~~~~~~kA~ 127 (158)
T 3tul_A 71 TDTAKSVYDAATKKLTQAQNKLQSLDPADPGYAQAEAAVEQAGKEATEAKEALDKAT 127 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC-------CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666777777777776533 23556666777777777777776553
No 58
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=52.90 E-value=57 Score=22.97 Aligned_cols=59 Identities=7% Similarity=-0.005 Sum_probs=38.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhcC---CC---ChhHHHHHHHHHHchHHHHHHHHHHHHHHHh
Q 047357 3 EVFEGYERQYCELSTNLSRKCSSASL---LP---DGDQKKEKYSEIQSGLDDADALIRKMDLEAR 61 (219)
Q Consensus 3 ~~f~~ye~e~~~~~~~i~~~l~~~~~---~~---~~~~~~~~~~~~~~~l~~a~~~~~~m~~E~~ 61 (219)
+=|-.-.+|....++.+...+.+... .+ +.++-..+-.+++..|+.++..++.++.-++
T Consensus 27 DPF~~Vk~EVq~sl~~l~~l~~~w~~l~~~~~~~s~~E~~~~~~EL~~~l~sie~dLeDLe~sI~ 91 (130)
T 4dnd_A 27 DPFFVVRGEVQKAVNTARGLYQRWCELLQESAAVGREELDWTTNELRNGLRSIEWDLEDLEETIG 91 (130)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888888888888888888877531 11 1234555566666666666666666665444
No 59
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=51.98 E-value=50 Score=22.06 Aligned_cols=74 Identities=15% Similarity=0.252 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHhhhhhcCCCChhHHHHHHHHHHchHH-HHHHHHHHHHHHHhcCCh-hHHHHHHHHHHHHHHHHHHHHH
Q 047357 10 RQYCELSTNLSRKCSSASLLPDGDQKKEKYSEIQSGLD-DADALIRKMDLEARSLQP-NVKAMLLAKLREYKSDLNKLKR 87 (219)
Q Consensus 10 ~e~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~-~a~~~~~~m~~E~~~~~~-~~r~~~~~k~~~~~~~l~~l~~ 87 (219)
..+..-+..+.....++....++. ++...|+ ++...+.+|..+++.++. +.+..+...+......|..+++
T Consensus 13 ~t~s~niq~l~k~~~qlGTkrD~~-------~LR~~l~~~l~~~~~~L~k~~~~l~~l~qkeRL~~dF~~l~~~fQ~~qr 85 (97)
T 1hs7_A 13 ETFAEQSRVLEKECTKIGSKRDSK-------ELRYKIETELIPNCTSVRDKIESNILIHQNGKLSADFKNLKTKYQSLQQ 85 (97)
T ss_dssp HHHHHHHHHHHHHHHHTTSSSCCH-------HHHHHHHHTHHHHHHHHHHHHHHSTHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCcchH-------HHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHH
Confidence 334444445566666665543443 3445555 555556666666665443 2345566655665555555555
Q ss_pred HHH
Q 047357 88 EFK 90 (219)
Q Consensus 88 ~~~ 90 (219)
.+.
T Consensus 86 ~y~ 88 (97)
T 1hs7_A 86 SYN 88 (97)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 60
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=51.38 E-value=57 Score=22.51 Aligned_cols=21 Identities=29% Similarity=0.392 Sum_probs=12.2
Q ss_pred CchhHHHHHHHHHHHHHHHHH
Q 047357 1 MSEVFEGYERQYCELSTNLSR 21 (219)
Q Consensus 1 Ms~~f~~ye~e~~~~~~~i~~ 21 (219)
||.++.-|+.++..+-.+|..
T Consensus 11 ~~~~~~~ye~~I~~LR~qid~ 31 (119)
T 3ol1_A 11 MSRLGDLYEEEMRELRRQVDQ 31 (119)
T ss_dssp --CCTHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHH
Confidence 555666677766666666553
No 61
>2kv5_A FST, putative uncharacterized protein RNAI; toxin-antitoxin, bacterial, toxin; NMR {Enterococcus faecalis}
Probab=50.03 E-value=22 Score=18.75 Aligned_cols=23 Identities=4% Similarity=0.387 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc
Q 047357 196 IVGSIIVALVIAIIFILFYKLSH 218 (219)
Q Consensus 196 Il~~ii~~l~~~i~~vi~~k~~~ 218 (219)
|+..||+=+++++++.++-+|+-
T Consensus 4 i~~~IIaPivVGvvl~L~d~WLn 26 (33)
T 2kv5_A 4 LMSLVIAPIFVGLVLEMISRVLD 26 (33)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 45566777777777778777763
No 62
>1v64_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=49.96 E-value=56 Score=22.00 Aligned_cols=55 Identities=13% Similarity=0.065 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHhhhccCC
Q 047357 51 ALIRKMDLEARSLQPNVKAMLLAKLREYKSDLNKLKREFKRVSSSDAHEELLESG 105 (219)
Q Consensus 51 ~~~~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~~l~~~~~~~~~~~~r~~L~~~~ 105 (219)
+..+.+-..++.++..++..|.......+..+..--..+.......+|++|++..
T Consensus 43 eisk~lg~~Wk~Ls~~eK~~Y~~~A~~~k~~Y~~e~~~Y~~~~~~~~r~~~~~~~ 97 (108)
T 1v64_A 43 ERMVLCSQQWKLLSQKEKDAYHKKCDQKKKDYEVELLRFLESLPEEEQQRVLGEE 97 (108)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHhcC
Confidence 3456666778899999999998887765555555444554444445788887653
No 63
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=49.63 E-value=20 Score=22.99 Aligned_cols=58 Identities=9% Similarity=0.197 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhHhHHHHHHHHHHHHHH
Q 047357 132 ERIRESRRVMLETEELGISIVEDLNQQRETLLNSRNKLHGVDDAISKSKKVLSSMSRR 189 (219)
Q Consensus 132 ~~L~~s~~~~~ete~~g~~i~~~L~~Qre~L~~~~~~~~~i~~~l~~s~~~l~~m~rr 189 (219)
+.|...+..++|+..+-..-++.+-.-.|.|....++..++...-..=.+.-+.+.|+
T Consensus 15 d~l~~vq~el~ev~~iM~~NI~~vLeRGekLd~L~~kt~~L~~~s~~F~k~A~~l~rk 72 (80)
T 1l4a_A 15 KRLQQTQAQVEEVVDIMRVNVDKVLERDSKISELDDRADALQAGASQFEASAGKLKRK 72 (80)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSTTTTHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677778888888888888888888888888888777655544333333444444
No 64
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=47.99 E-value=53 Score=21.18 Aligned_cols=21 Identities=33% Similarity=0.403 Sum_probs=14.4
Q ss_pred Cc-hhHHHHHHHHHHHHHHHHH
Q 047357 1 MS-EVFEGYERQYCELSTNLSR 21 (219)
Q Consensus 1 Ms-~~f~~ye~e~~~~~~~i~~ 21 (219)
|| ++|+..|.-++..++.|.-
T Consensus 3 MS~ElleqLE~KIq~avdtI~l 24 (81)
T 2jee_A 3 MSLEVFEKLEAKVQQAIDTITL 24 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHH
Confidence 66 7777777777666666554
No 65
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=45.41 E-value=29 Score=19.04 Aligned_cols=19 Identities=16% Similarity=0.433 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 047357 195 WIVGSIIVALVIAIIFILF 213 (219)
Q Consensus 195 ~Il~~ii~~l~~~i~~vi~ 213 (219)
+|++++++-.+..|+++-|
T Consensus 14 lII~~vmaGiIG~IllI~y 32 (40)
T 1afo_A 14 LIIFGVMAGVIGTILLISY 32 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433
No 66
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=45.24 E-value=66 Score=21.46 Aligned_cols=11 Identities=18% Similarity=0.308 Sum_probs=4.3
Q ss_pred HHHHHHHHhcC
Q 047357 53 IRKMDLEARSL 63 (219)
Q Consensus 53 ~~~m~~E~~~~ 63 (219)
.+.|+.|+..+
T Consensus 49 ~~eL~~EI~~L 59 (96)
T 1t3j_A 49 QKHLEEEIARL 59 (96)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33344444333
No 67
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=44.96 E-value=75 Score=22.05 Aligned_cols=82 Identities=12% Similarity=0.244 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhcCCCChhHHHHHHHHHHchHHHHHHHHHHHHHHH---hcCC--hhHHHHHHHHHHHH
Q 047357 4 VFEGYERQYCELSTNLSRKCSSASLLPDGDQKKEKYSEIQSGLDDADALIRKMDLEA---RSLQ--PNVKAMLLAKLREY 78 (219)
Q Consensus 4 ~f~~ye~e~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~m~~E~---~~~~--~~~r~~~~~k~~~~ 78 (219)
.|+..|.+|+.|...=.....+- +.....+...|.+...+..+++--+ ..+. .-.+..|...++.|
T Consensus 10 ~l~~LEaeyq~L~~kE~qrynqe---------ka~AE~A~~~L~~~~~m~~~i~ek~~~i~~~~~~~~yK~eY~~L~KkY 80 (119)
T 2avr_X 10 ELQALDAEYQNLANQEEARFNEE---------RAQADAARQALAQNEQVYNELSQRAQRLQAEANTRFYKSQYQELASKY 80 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 56677777777666555544333 2222333333333322222222111 1111 22478999999999
Q ss_pred HHHHHHHHHHHHhhcc
Q 047357 79 KSDLNKLKREFKRVSS 94 (219)
Q Consensus 79 ~~~l~~l~~~~~~~~~ 94 (219)
+.-+..|.++++....
T Consensus 81 k~~~~~Ld~eI~~qe~ 96 (119)
T 2avr_X 81 EDALKKLEAEMEQQKA 96 (119)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999876653
No 68
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=44.61 E-value=1.3e+02 Score=24.72 Aligned_cols=51 Identities=14% Similarity=0.154 Sum_probs=33.0
Q ss_pred HHHHchHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 047357 40 SEIQSGLDDADALIRKMDLEARSLQPNVKAMLLAKLREYKSDLNKLKREFKRVS 93 (219)
Q Consensus 40 ~~~~~~l~~a~~~~~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~~l~~~~~~~~ 93 (219)
...-..++.+++.++.+|.++..-|. .....++..++.++-.+++.+.-.+
T Consensus 191 d~y~~~l~~l~~~id~lE~~v~~~~~---~~~l~~l~~lrr~l~~lrr~l~p~~ 241 (363)
T 2iub_A 191 DDYFVLLEKIDDEIDVLEEEVLERPE---KETVQRTHQLKRNLVELRKTIWPLR 241 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSSCC---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCC---hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566777777777777665443 2446677777778887777765543
No 69
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=43.82 E-value=55 Score=24.38 Aligned_cols=22 Identities=5% Similarity=0.129 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 047357 69 AMLLAKLREYKSDLNKLKREFK 90 (219)
Q Consensus 69 ~~~~~k~~~~~~~l~~l~~~~~ 90 (219)
.++..++...+.++.....+++
T Consensus 116 ~aL~~Ei~~Lr~qL~~~R~k~~ 137 (175)
T 3lay_A 116 NAVAKEMESLGQKLDEQRVKRD 137 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666666555543
No 70
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=42.90 E-value=32 Score=17.25 Aligned_cols=19 Identities=32% Similarity=0.459 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 047357 196 IVGSIIVALVIAIIFILFY 214 (219)
Q Consensus 196 Il~~ii~~l~~~i~~vi~~ 214 (219)
|..++.++-+++++|.+|.
T Consensus 9 iaglvalltflafgfwlfk 27 (32)
T 2lx0_A 9 IAGLVALLTFLAFGFWLFK 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444555566665554
No 71
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=42.57 E-value=66 Score=20.67 Aligned_cols=33 Identities=6% Similarity=0.187 Sum_probs=17.4
Q ss_pred ChhHHHHHHHHHHchHHHHHHHHHHHHHHHhcC
Q 047357 31 DGDQKKEKYSEIQSGLDDADALIRKMDLEARSL 63 (219)
Q Consensus 31 ~~~~~~~~~~~~~~~l~~a~~~~~~m~~E~~~~ 63 (219)
+|++-......+...-.+++..+..|...+..+
T Consensus 9 ~~e~l~~~A~~~~~~~~~i~~~l~~L~~~~~~l 41 (98)
T 3gwk_C 9 TPEELRSSAQKYTAGSQQVTEVLNLLTQEQAVI 41 (98)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555443
No 72
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=42.49 E-value=1.3e+02 Score=26.07 Aligned_cols=50 Identities=10% Similarity=0.060 Sum_probs=35.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhcCCCChhHHHHHHHHHHchHHHHHHHHH
Q 047357 3 EVFEGYERQYCELSTNLSRKCSSASLLPDGDQKKEKYSEIQSGLDDADALIR 54 (219)
Q Consensus 3 ~~f~~ye~e~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ 54 (219)
+.+..|+...+.-+++++..+.++... +.+....+..++......+....
T Consensus 84 d~L~kye~~V~~dl~~Le~~l~~isn~--Ts~a~~~v~~ik~s~~~~q~~~~ 133 (461)
T 3ghg_B 84 EALLQQERPIRNSVDELNNNVEAVSQT--SSSSFQYMYLLKDLWQKRQKQVK 133 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHTHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccchhhHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHhccccCCCC
Confidence 567889999999999999999999663 44455556666665555544444
No 73
>3ajm_A Programmed cell death protein 10; adaptor protein, dimerization, four-helix bundle, apoptosis; HET: 4IP; 2.30A {Homo sapiens} PDB: 3l8i_A 3rqe_A 3rqf_A 3rqg_A 3l8j_A
Probab=42.47 E-value=1.1e+02 Score=23.39 Aligned_cols=75 Identities=13% Similarity=0.087 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHhhhhhcCCCChhHHHHHHHHHHchHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 047357 10 RQYCELSTNLSRKCSSASLLPDGDQKKEKYSEIQSGLDDADALIRKMDLEARSLQPNVKAMLLAKLREYKSDLNKLKREF 89 (219)
Q Consensus 10 ~e~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~~l~~~~ 89 (219)
+++..--..+...|+++|.. -.+|..-+.-++.-=...+.+++...--....|+. .+..+.+.|.++-.+.+.|
T Consensus 94 qel~~rA~~LK~iLSrIPdE--I~dR~~FL~tIKeIAsaIKklLDAvn~v~~~~~~~----~k~~le~~KreFVkySKrF 167 (213)
T 3ajm_A 94 QDLNEKARALKQILSKIPDE--INDRVRFLQTIKDIASAIKELLDTVNNVFKKYQYQ----NRRALEHQKKEFVKYSKSF 167 (213)
T ss_dssp HHHHHHHHHHHHHHHTHHHH--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCS----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCchh--hcchHHHHHHHHHHHHHHHHHHHHHHHHHhhcchh----HHHHHHHHHHHHHHHhhHh
Confidence 44555556667778888752 23444444444333333444455554444556655 4445555666666666666
Q ss_pred H
Q 047357 90 K 90 (219)
Q Consensus 90 ~ 90 (219)
.
T Consensus 168 S 168 (213)
T 3ajm_A 168 S 168 (213)
T ss_dssp H
T ss_pred h
Confidence 4
No 74
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=42.19 E-value=59 Score=23.02 Aligned_cols=39 Identities=18% Similarity=0.208 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047357 176 ISKSKKVLSSMSRRMTRNKWIVGSIIVALVIAIIFILFY 214 (219)
Q Consensus 176 l~~s~~~l~~m~rr~~~dk~Il~~ii~~l~~~i~~vi~~ 214 (219)
+...+++++.+.+......+++.+++++++++++.++|+
T Consensus 8 ~~~l~rl~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 46 (148)
T 3vou_A 8 ILTLKRMLKACLRAWKDKEFQVLFVLTFLTLTSGTIFYS 46 (148)
T ss_dssp HHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777776655555555555555555555555543
No 75
>1q90_R Cytochrome B6-F complex iron-sulfur subunit; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.12.1
Probab=40.99 E-value=52 Score=19.04 Aligned_cols=18 Identities=22% Similarity=0.278 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 047357 185 SMSRRMTRNKWIVGSIIV 202 (219)
Q Consensus 185 ~m~rr~~~dk~Il~~ii~ 202 (219)
.|.||..-|++.+.++-+
T Consensus 8 dm~RRqfln~l~~G~~a~ 25 (49)
T 1q90_R 8 DMNKRNIMNLILAGGAGL 25 (49)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHH
Confidence 489999999998855433
No 76
>4afl_A P29ING4, inhibitor of growth protein 4; cell cycle, tumour suppressor, chromatin remodelling; 2.28A {Homo sapiens}
Probab=40.66 E-value=78 Score=21.00 Aligned_cols=24 Identities=21% Similarity=0.177 Sum_probs=13.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhh
Q 047357 3 EVFEGYERQYCELSTNLSRKCSSA 26 (219)
Q Consensus 3 ~~f~~ye~e~~~~~~~i~~~l~~~ 26 (219)
..+++|-+.+.++=.++...+..+
T Consensus 4 ~yledyld~ie~LP~El~r~~~~i 27 (104)
T 4afl_A 4 MYLEHYLDSIENLPFELQRNFQLM 27 (104)
T ss_dssp HHHHHHHHSGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCHHHHHHHHHHH
Confidence 345555555555555555555555
No 77
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=40.02 E-value=98 Score=21.99 Aligned_cols=58 Identities=5% Similarity=0.013 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHhhhhhcCCCChhHHHHHHHHHHchHHHHHHHHHHHHHHHhcCChhHHH
Q 047357 11 QYCELSTNLSRKCSSASLLPDGDQKKEKYSEIQSGLDDADALIRKMDLEARSLQPNVKA 69 (219)
Q Consensus 11 e~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~m~~E~~~~~~~~r~ 69 (219)
+...+.++....|..+... ++.....+-.-+....+.++..++-.+..+...||+.|-
T Consensus 4 ~~~~~~~~f~~~L~~L~~n-Sk~~I~~LT~~a~~~~~~a~~Iv~~i~~~i~k~~p~~KL 61 (144)
T 1sz9_A 4 DTEVIVKDFNSILEELTFN-SRPIITTLTKLAEENISCAQYFVDAIESRIEKCMPKQKL 61 (144)
T ss_dssp HHHHHHHHHHHHHTTCSSC-CHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCHHHHH
T ss_pred cHHHHHHHHHHHHHHhccc-cHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHhhHH
Confidence 4455666666666666422 445555555567777888999999999999999988764
No 78
>2wwb_C SEC61BETA, protein transport protein SEC61 subunit beta; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=39.29 E-value=9 Score=25.69 Aligned_cols=24 Identities=4% Similarity=0.112 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Q 047357 195 WIVGSIIVALVIAIIFILFYKLSH 218 (219)
Q Consensus 195 ~Il~~ii~~l~~~i~~vi~~k~~~ 218 (219)
.++++.+++.++++++-+|.||.|
T Consensus 72 ~VLv~sl~Fi~~Vi~Lhi~~K~~r 95 (96)
T 2wwb_C 72 PVLVMSLLFIASVFMLHIWGKYTR 95 (96)
T ss_dssp SHHHHHHHHHHHHHHHSCSSSCCC
T ss_pred EehhhHHHHHHHHHHHHHhhhhcc
Confidence 344444444444455556666665
No 79
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=37.32 E-value=36 Score=21.29 Aligned_cols=13 Identities=15% Similarity=0.519 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHh
Q 047357 203 ALVIAIIFILFYK 215 (219)
Q Consensus 203 ~l~~~i~~vi~~k 215 (219)
+|+++|++++.-|
T Consensus 27 Lfi~GI~iilS~K 39 (72)
T 2jo1_A 27 LFILGILIVLSRR 39 (72)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCc
Confidence 3344444455444
No 80
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=37.28 E-value=79 Score=20.10 Aligned_cols=60 Identities=12% Similarity=0.228 Sum_probs=33.4
Q ss_pred ChhHHHHHHHHHHchHHHHHHHHHHHHHHHhcCC----hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 047357 31 DGDQKKEKYSEIQSGLDDADALIRKMDLEARSLQ----PNVKAMLLAKLREYKSDLNKLKREFK 90 (219)
Q Consensus 31 ~~~~~~~~~~~~~~~l~~a~~~~~~m~~E~~~~~----~~~r~~~~~k~~~~~~~l~~l~~~~~ 90 (219)
+|++-......+...-.+++..+..|...+..+. ......|.....+.+..+..+...+.
T Consensus 10 ~~~~l~~~A~~~~~~~~~i~~~l~~L~~~v~~L~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~ 73 (99)
T 3zbh_A 10 TPEELRGVARQYNVESSNVTELIARLDQMSHTLQGIWEGASSEAFIQQYQELRPSFEKMAVLLN 73 (99)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666666666666666666543 12334455555555544444444443
No 81
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=37.10 E-value=70 Score=19.39 Aligned_cols=44 Identities=20% Similarity=0.269 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhHh
Q 047357 132 ERIRESRRVMLETEELGISIVEDLNQQRETLLNSRNKLHGVDDA 175 (219)
Q Consensus 132 ~~L~~s~~~~~ete~~g~~i~~~L~~Qre~L~~~~~~~~~i~~~ 175 (219)
+.|...+.-++|+..+-..-++.+-...|.|....++..++...
T Consensus 9 d~l~~vq~~l~evk~iM~~NI~~vL~RgekLd~L~~ks~~L~~~ 52 (65)
T 1gl2_A 9 DRVRNLQSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEAT 52 (65)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 45666777788888888888888888888888877776665443
No 82
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=34.47 E-value=86 Score=19.70 Aligned_cols=24 Identities=17% Similarity=0.205 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 047357 70 MLLAKLREYKSDLNKLKREFKRVS 93 (219)
Q Consensus 70 ~~~~k~~~~~~~l~~l~~~~~~~~ 93 (219)
.+..++.++...+..|+.++.+.+
T Consensus 44 eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 44 ELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455566666666666666665554
No 83
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=34.23 E-value=79 Score=19.19 Aligned_cols=54 Identities=9% Similarity=-0.002 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhHhHHHHHHHHHHH
Q 047357 133 RIRESRRVMLETEELGISIVEDLNQQRETLLNSRNKLHGVDDAISKSKKVLSSM 186 (219)
Q Consensus 133 ~L~~s~~~~~ete~~g~~i~~~L~~Qre~L~~~~~~~~~i~~~l~~s~~~l~~m 186 (219)
.|...+..+.++..+.....+.+.+-.|.|....++..++...-..=.+.-+.+
T Consensus 5 ~i~~v~~qv~ev~~iM~~ni~kvlERGekL~~L~dkT~~L~~~A~~F~~~A~~l 58 (63)
T 1urq_A 5 GIEGVKGAASGVVGELARARLALDERGQKLSDLEERTAAMMSSADSFSKHAHEM 58 (63)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567778888888888888888888989988888887766555444433333
No 84
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=33.21 E-value=1.4e+02 Score=21.85 Aligned_cols=68 Identities=13% Similarity=0.089 Sum_probs=41.1
Q ss_pred hhHHHHHHHHHHchHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHhhhccC
Q 047357 32 GDQKKEKYSEIQSGLDDADALIRKMDLEARSLQPNVKAMLLAKLREYKSDLNKLKREFKRVSSSDAHEELLES 104 (219)
Q Consensus 32 ~~~~~~~~~~~~~~l~~a~~~~~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~~l~~~~~~~~~~~~r~~L~~~ 104 (219)
-++....++++-..-.+....-..|..|+.. .+..|...+..+....+.++..+...... .|++||..
T Consensus 15 ~~~~~~alr~ia~l~r~~~~i~~~~n~eI~~----ik~~~~~~~~~l~~~i~~l~~~l~~y~e~-~r~elf~k 82 (171)
T 2p2u_A 15 IRQAEGALAEIATIDRKVGEIEAQMNEAIDA----AKARASQKSAPLLARRKELEDGVATFATL-NKTEMFKD 82 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-THHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHhcCC
Confidence 3444444544444444444444444455444 45678888888888888888877665433 78888764
No 85
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=33.00 E-value=92 Score=19.59 Aligned_cols=53 Identities=11% Similarity=0.215 Sum_probs=35.0
Q ss_pred ChhHHHHHHHHHHchHHHHHHHHHHHHHHHhcCC----hhHHHHHHHHHHHHHHHHH
Q 047357 31 DGDQKKEKYSEIQSGLDDADALIRKMDLEARSLQ----PNVKAMLLAKLREYKSDLN 83 (219)
Q Consensus 31 ~~~~~~~~~~~~~~~l~~a~~~~~~m~~E~~~~~----~~~r~~~~~k~~~~~~~l~ 83 (219)
+|++-......+...-.+++..+..|...+..+. ......|...+.+.+..+.
T Consensus 10 ~~e~l~~~A~~~~~~~~~i~~~l~~L~~~~~~L~~~W~G~a~~af~~~~~~~~~~~~ 66 (93)
T 4ioe_A 10 TPEELERIAGNFKNAAGEAQSQINRLEGDINSLEGQWAGATQAKFRGEFIQSKQAMQ 66 (93)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHH
Confidence 6777777788888888888888888888888774 2334455553333333333
No 86
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=32.98 E-value=59 Score=17.38 Aligned_cols=17 Identities=24% Similarity=0.669 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 047357 198 GSIIVALVIAIIFILFY 214 (219)
Q Consensus 198 ~~ii~~l~~~i~~vi~~ 214 (219)
|++.+++++++.|--|+
T Consensus 19 ~GLLlifvlavlFssyf 35 (37)
T 3arc_L 19 LGLLLILVLALLFSSYF 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhc
Confidence 45556666666555443
No 87
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=32.98 E-value=1.7e+02 Score=22.73 Aligned_cols=137 Identities=8% Similarity=0.069 Sum_probs=0.0
Q ss_pred HHHHHchHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcchh-hHhhhccCCCCCCCCCCHHHH
Q 047357 39 YSEIQSGLDDADALIRKMDLEARSLQPNVKAMLLAKLREYKSDLNKLKREFKRVSSSD-AHEELLESGKADPNVVSGEQR 117 (219)
Q Consensus 39 ~~~~~~~l~~a~~~~~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~~l~~~~~~~~~~~-~r~~L~~~~~~~~~~~~~~~r 117 (219)
++.++..|.++...+..+-.|+..+.. ....+..++...+..+.+++.+..++.... +-...... ...+
T Consensus 13 LQ~lD~~i~~l~~~~~~lp~el~~le~-~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~---------~~~~ 82 (256)
T 3na7_A 13 ISHLDKEIDSLEPLIREKRKDLDKALN-DKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIAS---------IQKK 82 (256)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHH
Q ss_pred HHHHhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhHhHHHHHHHHHH
Q 047357 118 ERLAMSVERINQSGERIRESRRVMLETEELGISIVEDLNQQRETLLNSRNKLHGVDDAISKSKKVLSS 185 (219)
Q Consensus 118 ~~l~~~~~~l~~~~~~L~~s~~~~~ete~~g~~i~~~L~~Qre~L~~~~~~~~~i~~~l~~s~~~l~~ 185 (219)
..-..+..-+..-...++...+-....+.--.+++..+....+.+......+......+.....-+..
T Consensus 83 l~~v~~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~ 150 (256)
T 3na7_A 83 MSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVEN 150 (256)
T ss_dssp HHHCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 88
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=32.77 E-value=96 Score=19.73 Aligned_cols=44 Identities=11% Similarity=0.166 Sum_probs=31.6
Q ss_pred HchHHHHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHHHHHHHHHH
Q 047357 43 QSGLDDADALIRKMDLEARSL-QPNVKAMLLAKLREYKSDLNKLK 86 (219)
Q Consensus 43 ~~~l~~a~~~~~~m~~E~~~~-~~~~r~~~~~k~~~~~~~l~~l~ 86 (219)
+..+.=.+..+.++...+..+ +|..|.+|.+-.++..++++..+
T Consensus 29 dta~~yY~g~~~qI~k~l~~~~d~~~r~kW~~~~~ei~~E~~~Vk 73 (78)
T 2rpa_A 29 DSAMVYYQGVLDQMNKYLYSVKDTHLRQKWQQVWQEINVEAKQVK 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHhHHHHHHHHHHHHHHHH
Confidence 344455566677777777777 57788899888888777777664
No 89
>1pfi_A Major coat protein of PF1 virus; complex(viral coat protein/DNA), helical virus; HET: DC; 3.00A {Pseudomonas phage PF1} SCOP: h.1.4.1 PDB: 1ifn_A 1ifm_A* 1pjf_A 1ql1_A 1ql2_A 1zn5_A 2ifm_A 2ifn_A 2klv_A 2ksj_A 2xkm_A 3ifm_A 4ifm_A
Probab=32.57 E-value=44 Score=18.56 Aligned_cols=7 Identities=29% Similarity=0.676 Sum_probs=3.0
Q ss_pred HHHhhcc
Q 047357 212 LFYKLSH 218 (219)
Q Consensus 212 i~~k~~~ 218 (219)
++|+..|
T Consensus 38 Liysm~R 44 (46)
T 1pfi_A 38 LIYSMLR 44 (46)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 3344444
No 90
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=32.08 E-value=1.2e+02 Score=20.71 Aligned_cols=14 Identities=14% Similarity=0.537 Sum_probs=7.1
Q ss_pred hhhhhHHHHHHHHH
Q 047357 127 INQSGERIRESRRV 140 (219)
Q Consensus 127 l~~~~~~L~~s~~~ 140 (219)
+...++-|+++.|.
T Consensus 61 LEq~NDDLER~~R~ 74 (111)
T 2v66_B 61 LEQANDDLERAKRA 74 (111)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHhchHHHHHHHH
Confidence 44444555555553
No 91
>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A
Probab=31.78 E-value=98 Score=19.53 Aligned_cols=33 Identities=9% Similarity=0.216 Sum_probs=19.2
Q ss_pred ChhHHHHHHHHHHchHHHHHHHHHHHHHHHhcC
Q 047357 31 DGDQKKEKYSEIQSGLDDADALIRKMDLEARSL 63 (219)
Q Consensus 31 ~~~~~~~~~~~~~~~l~~a~~~~~~m~~E~~~~ 63 (219)
++++-......+...-.+++..+..|...+..+
T Consensus 7 ~~~~l~~~A~~~~~~~~~l~~~l~~L~~~~~~L 39 (97)
T 2vs0_A 7 SPEEIRAKSQSYGQGSDQIRQILSDLTRAQGEI 39 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555666666666666666666655543
No 92
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=31.67 E-value=1e+02 Score=19.78 Aligned_cols=29 Identities=14% Similarity=0.275 Sum_probs=23.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047357 64 QPNVKAMLLAKLREYKSDLNKLKREFKRV 92 (219)
Q Consensus 64 ~~~~r~~~~~k~~~~~~~l~~l~~~~~~~ 92 (219)
++..|..+..++.+|-...+.++.-+...
T Consensus 55 d~~~k~~lr~K~~eYl~RAE~LK~~l~~~ 83 (86)
T 4a5x_A 55 DNTKRCNLREKISKYMDRAENIKKYLDQE 83 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35567889999999999999999887654
No 93
>2ww9_C Protein transport protein SEB2; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_C
Probab=31.53 E-value=28 Score=22.82 Aligned_cols=24 Identities=13% Similarity=0.052 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 047357 194 KWIVGSIIVALVIAIIFILFYKLS 217 (219)
Q Consensus 194 k~Il~~ii~~l~~~i~~vi~~k~~ 217 (219)
+.++.+.+++.++.+++-+|-||.
T Consensus 62 ~~VLv~sl~FIa~VilLHI~gK~~ 85 (87)
T 2ww9_C 62 LVVLFLSVGFIFSVIALHLLTKFT 85 (87)
T ss_dssp HHHHHHHHHHHHHHHHC-------
T ss_pred eeehhhHHHHHHHHHHHHHhhhhc
Confidence 344444444444555555666654
No 94
>1v54_D Cytochrome C oxidase subunit IV isoform 1; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.1.1 PDB: 1oco_D* 1occ_D* 1ocz_D* 1ocr_D* 1v55_D* 2dyr_D* 2dys_D* 2eij_D* 2eik_D* 2eil_D* 2eim_D* 2ein_D* 2occ_D* 2ybb_O* 2zxw_D* 3abk_D* 3abl_D* 3abm_D* 3ag1_D* 3ag2_D* ...
Probab=31.45 E-value=47 Score=24.02 Aligned_cols=24 Identities=17% Similarity=0.340 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 047357 194 KWIVGSIIVALVIAIIFILFYKLS 217 (219)
Q Consensus 194 k~Il~~ii~~l~~~i~~vi~~k~~ 217 (219)
|.|+.++++++.+.++++++.+.+
T Consensus 79 K~v~g~v~~~i~~s~~~f~~~r~~ 102 (147)
T 1v54_D 79 KTVVGAAMFFIGFTALLLIWEKHY 102 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335666666666666666665543
No 95
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=30.66 E-value=35 Score=21.11 Aligned_cols=10 Identities=20% Similarity=0.149 Sum_probs=4.2
Q ss_pred HHHHHHHHHH
Q 047357 205 VIAIIFILFY 214 (219)
Q Consensus 205 ~~~i~~vi~~ 214 (219)
+++|++++.-
T Consensus 30 i~GI~iilS~ 39 (67)
T 2jp3_A 30 IAGIALALSG 39 (67)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHcC
Confidence 3444444443
No 96
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=30.50 E-value=98 Score=20.86 Aligned_cols=37 Identities=16% Similarity=0.200 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047357 178 KSKKVLSSMSRRMTRNKWIVGSIIVALVIAIIFILFY 214 (219)
Q Consensus 178 ~s~~~l~~m~rr~~~dk~Il~~ii~~l~~~i~~vi~~ 214 (219)
...++++.+.+......+...+++++++++++.++|.
T Consensus 7 ~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 43 (114)
T 2q67_A 7 TLKRMLRACLRAWKDKEFQVLFVLTILTLISGTIFYS 43 (114)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3456666665555444444444444444444444443
No 97
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=30.47 E-value=1.5e+02 Score=21.34 Aligned_cols=61 Identities=11% Similarity=0.101 Sum_probs=34.6
Q ss_pred hHHHHHHHHHHchHHHHHHHHHHHHHHHhcCCh------hHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 047357 33 DQKKEKYSEIQSGLDDADALIRKMDLEARSLQP------NVKAMLLAKLREYKSDLNKLKREFKRVS 93 (219)
Q Consensus 33 ~~~~~~~~~~~~~l~~a~~~~~~m~~E~~~~~~------~~r~~~~~k~~~~~~~l~~l~~~~~~~~ 93 (219)
++-..+...++....-+.+....++.|+..-.. .-...|...+.+.+..+++++..+.+..
T Consensus 68 ~~~e~l~~~veeA~~~L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~ 134 (152)
T 4fla_A 68 EAAERLSKTVDEACLLLAEYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVT 134 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556666666666677777777777654221 1123445555555556666666555543
No 98
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=30.39 E-value=1.5e+02 Score=21.32 Aligned_cols=93 Identities=11% Similarity=0.075 Sum_probs=54.7
Q ss_pred CchhHHHHHHHHHHHHHHHHHhhhhhcCCC-----Ch-hHH--HHH-----HHHHHchHHHH----HHHHHHHHHHHhcC
Q 047357 1 MSEVFEGYERQYCELSTNLSRKCSSASLLP-----DG-DQK--KEK-----YSEIQSGLDDA----DALIRKMDLEARSL 63 (219)
Q Consensus 1 Ms~~f~~ye~e~~~~~~~i~~~l~~~~~~~-----~~-~~~--~~~-----~~~~~~~l~~a----~~~~~~m~~E~~~~ 63 (219)
|++...+.-..+..+...+.+.++-+.... ++ +.. ... -..+...+.++ -...++++.-+.++
T Consensus 1 MaDrLTQLQd~ldqLa~~f~nsig~Lq~~app~~~~~~~~~~~~~~~~~~~~~~f~~~~~ela~dli~kakqIe~LIdsL 80 (151)
T 1yke_B 1 MTDRLTQLQICLDQMTEQFCATLNYIDKNHGFERLTVNEPQMSDKHATVVPPEEFSNTIDELSTDIILKTRQINKLIDSL 80 (151)
T ss_dssp --CCHHHHHHHHHHHHHHTTTTHHHHHHTTGGGGCCC------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 788888888888888888888777664320 10 000 000 01222222222 22247888889999
Q ss_pred Chh--HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 047357 64 QPN--VKAMLLAKLREYKSDLNKLKREFKRVS 93 (219)
Q Consensus 64 ~~~--~r~~~~~k~~~~~~~l~~l~~~~~~~~ 93 (219)
|.- .-..-..++++...+......++....
T Consensus 81 Pg~~~seeeQ~~ri~~Le~E~~~~~~el~~~v 112 (151)
T 1yke_B 81 PGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAI 112 (151)
T ss_dssp TTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 953 345667788888888888877776554
No 99
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=29.10 E-value=1.5e+02 Score=20.76 Aligned_cols=54 Identities=20% Similarity=0.172 Sum_probs=32.1
Q ss_pred HHHHHchHHHHHHHHHHHHHHHhcCC-------hhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047357 39 YSEIQSGLDDADALIRKMDLEARSLQ-------PNVKAMLLAKLREYKSDLNKLKREFKRV 92 (219)
Q Consensus 39 ~~~~~~~l~~a~~~~~~m~~E~~~~~-------~~~r~~~~~k~~~~~~~l~~l~~~~~~~ 92 (219)
-.++...++.++.++..........+ ...+.++..-+...+.++++|.+.+.-.
T Consensus 33 k~EVq~sl~~l~~l~~~w~~l~~~~~~~s~~E~~~~~~EL~~~l~sie~dLeDLe~sI~iv 93 (130)
T 4dnd_A 33 RGEVQKAVNTARGLYQRWCELLQESAAVGREELDWTTNELRNGLRSIEWDLEDLEETIGIV 93 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777654333222 1224566777777777777777776544
No 100
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=29.05 E-value=1.5e+02 Score=25.18 Aligned_cols=26 Identities=8% Similarity=0.054 Sum_probs=20.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhcC
Q 047357 3 EVFEGYERQYCELSTNLSRKCSSASL 28 (219)
Q Consensus 3 ~~f~~ye~e~~~~~~~i~~~l~~~~~ 28 (219)
+.+..|+...+.-+++++..+.++..
T Consensus 27 d~L~kye~~V~~~l~~L~~~l~~isn 52 (411)
T 3ghg_C 27 DFLSTYQTKVDKDLQSLEDILHQVEN 52 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccchhhHHHHHHHHHHHHHh
Confidence 56778888888888888888777744
No 101
>1svf_B Protein (fusion glycoprotein); paramyxovirus, SV5, coiled-coil, viral protein; 1.40A {Simian virus 5} SCOP: h.3.2.1
Probab=28.87 E-value=36 Score=18.54 Aligned_cols=23 Identities=22% Similarity=0.235 Sum_probs=10.7
Q ss_pred HHHhhhhhhhhhHhHHHHHHHHH
Q 047357 162 LLNSRNKLHGVDDAISKSKKVLS 184 (219)
Q Consensus 162 L~~~~~~~~~i~~~l~~s~~~l~ 184 (219)
|..++..+.+...-+..|+.++.
T Consensus 14 L~~~n~sl~~A~~~l~~Sn~~L~ 36 (38)
T 1svf_B 14 LAAVNKSLSDALQHLAQSDTYLS 36 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444445554444
No 102
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=28.80 E-value=88 Score=19.21 Aligned_cols=30 Identities=7% Similarity=0.358 Sum_probs=22.9
Q ss_pred hhHHHHHHHHHHchHHHHHHHHHHHHHHHh
Q 047357 32 GDQKKEKYSEIQSGLDDADALIRKMDLEAR 61 (219)
Q Consensus 32 ~~~~~~~~~~~~~~l~~a~~~~~~m~~E~~ 61 (219)
|.+|...+..++..+.++..++..|..-+.
T Consensus 1 ~~eR~~ei~~ie~~i~eL~~iF~dla~lV~ 30 (71)
T 2nps_B 1 GSMRETAIQQLEADILDVNQIFKDLAMMIH 30 (71)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778888888888888888887776554
No 103
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=28.49 E-value=1.4e+02 Score=20.12 Aligned_cols=47 Identities=9% Similarity=-0.052 Sum_probs=30.1
Q ss_pred HHHHHhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047357 160 ETLLNSRNKLHGVDDAISKSKKVLSSMSRRMTRNKWIVGSIIVALVI 206 (219)
Q Consensus 160 e~L~~~~~~~~~i~~~l~~s~~~l~~m~rr~~~dk~Il~~ii~~l~~ 206 (219)
..+..+..++......+..|.+.=++-.++.+-=-+++.++++++.+
T Consensus 56 ~nv~~a~~~v~~g~~eL~kA~~yqk~~rkk~~i~l~~~~i~~~i~~~ 102 (109)
T 3hd7_B 56 YNVEHAVDYVERAVSDTKKAVKYQSKARRKKIMIIICCVILGIIIAS 102 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCcceehHHHHHHHHHHHHH
Confidence 34567777888888888888888777666665544444444333333
No 104
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=28.34 E-value=1.3e+02 Score=22.89 Aligned_cols=46 Identities=11% Similarity=0.244 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 047357 48 DADALIRKMDLEARSLQPNVKAMLLAKLREYKSDLNKLKREFKRVSS 94 (219)
Q Consensus 48 ~a~~~~~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~~l~~~~~~~~~ 94 (219)
+.-+.+.|++.|..+.-++ -+.+.......+++.++++.++++++.
T Consensus 27 ~~~~~~~~~~a~~~s~~s~-~~dl~~s~~~l~ae~~~L~~~l~kLeG 72 (206)
T 3oa7_A 27 ERTEALQQLRVNYGSFVSE-YNDLTKSHNTLSKELDNLRSRFGNLEG 72 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHccC
Confidence 3344566677766665433 245777777788899999999988764
No 105
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=28.27 E-value=1.3e+02 Score=19.64 Aligned_cols=44 Identities=11% Similarity=0.161 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHhcCC-hhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047357 49 ADALIRKMDLEARSLQ-PNVKAMLLAKLREYKSDLNKLKREFKRV 92 (219)
Q Consensus 49 a~~~~~~m~~E~~~~~-~~~r~~~~~k~~~~~~~l~~l~~~~~~~ 92 (219)
+.+-++.|-.-+...| +..+..+..++.+|....+.|+.-+..-
T Consensus 38 Y~~Aie~l~~alk~e~~~~~k~~l~~K~~eYl~RAE~LK~~l~~~ 82 (93)
T 1wfd_A 38 YQEGIDMLLQVLKGTKESSKRCVLRTKISGYMDRAENIKKYLDQE 82 (93)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3333444444444433 5667889999999999999999888643
No 106
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=28.20 E-value=1.4e+02 Score=20.17 Aligned_cols=25 Identities=12% Similarity=0.268 Sum_probs=16.8
Q ss_pred HHHHHHHchHHHHHHHHHHHHHHHh
Q 047357 37 EKYSEIQSGLDDADALIRKMDLEAR 61 (219)
Q Consensus 37 ~~~~~~~~~l~~a~~~~~~m~~E~~ 61 (219)
....++......++..|+.|+.+..
T Consensus 54 ~l~~~i~~~a~~ik~~Lk~l~~~~~ 78 (127)
T 1ez3_A 54 ELMSDIKKTANKVRSKLKSIEQSIE 78 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666677777777777776554
No 107
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=28.07 E-value=1.6e+02 Score=20.68 Aligned_cols=93 Identities=11% Similarity=0.069 Sum_probs=57.5
Q ss_pred CchhHHHHHHHHHHHHHHHHHhhhhhcCCC-----Ch-hHH--HH-----HHHHHHchHHHH----HHHHHHHHHHHhcC
Q 047357 1 MSEVFEGYERQYCELSTNLSRKCSSASLLP-----DG-DQK--KE-----KYSEIQSGLDDA----DALIRKMDLEARSL 63 (219)
Q Consensus 1 Ms~~f~~ye~e~~~~~~~i~~~l~~~~~~~-----~~-~~~--~~-----~~~~~~~~l~~a----~~~~~~m~~E~~~~ 63 (219)
|++.....-..+..+...+.+.++-+.... ++ +.. .. .-..+...+.++ -...++++.-+.++
T Consensus 1 MaDrlTQLQd~ldqla~~f~nsig~Lq~~a~p~~~~~~~~~~~~~~~~~~~~~~f~~~~~ela~dli~k~kqIe~LIdsL 80 (132)
T 1ykh_B 1 MTDRMTQLQICLDQMTEQFCATLNYIDKNHGFERLTVNEPQMSDKHATVVPPEEFSNTIDELSTDIILKTRQINKLIDSL 80 (132)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCC---------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCCCCCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 888999999999999999998888775321 00 000 00 001222222222 22247788889999
Q ss_pred Chh--HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 047357 64 QPN--VKAMLLAKLREYKSDLNKLKREFKRVS 93 (219)
Q Consensus 64 ~~~--~r~~~~~k~~~~~~~l~~l~~~~~~~~ 93 (219)
|.. .-..-..+++....+......++....
T Consensus 81 P~~~~see~Q~~ri~~L~~E~~~~~~el~~~v 112 (132)
T 1ykh_B 81 PGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAI 112 (132)
T ss_dssp TTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 953 345677788888888888887776553
No 108
>3p8c_F ABL interactor 2; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=27.79 E-value=1.2e+02 Score=22.19 Aligned_cols=40 Identities=13% Similarity=0.214 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhhHhHH
Q 047357 138 RRVMLETEELGISIVEDLNQQRETLLNSRNKLHGVDDAIS 177 (219)
Q Consensus 138 ~~~~~ete~~g~~i~~~L~~Qre~L~~~~~~~~~i~~~l~ 177 (219)
..+++....+|..++.-|..|.+++.+....+.-+...+.
T Consensus 60 aSVAyqIn~lA~~ll~lLd~Q~~~l~~mes~v~~l~Q~v~ 99 (159)
T 3p8c_F 60 ASVAYLINTLANNVLQMLDIQASQLRRMESSINHISQTVD 99 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467888899999999999999999999998887766643
No 109
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=27.76 E-value=3e+02 Score=23.80 Aligned_cols=89 Identities=12% Similarity=0.193 Sum_probs=47.4
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhcCCCChhHHHHHHHH-------HHchHHHHHHHHHHHHHHHhcCCh----hHHHHH
Q 047357 3 EVFEGYERQYCELSTNLSRKCSSASLLPDGDQKKEKYSE-------IQSGLDDADALIRKMDLEARSLQP----NVKAML 71 (219)
Q Consensus 3 ~~f~~ye~e~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~-------~~~~l~~a~~~~~~m~~E~~~~~~----~~r~~~ 71 (219)
.+....+++|..-+++|.+.+..+... + ..-...+.. -....+.-++.+.++-.+++.--. ..-...
T Consensus 54 glL~kqerdv~~rI~kLkn~L~~~s~s-~-~~s~~y~~~~~~~lk~~~~q~~dndn~~~e~S~eLe~ri~yIK~kVd~qi 131 (491)
T 1m1j_A 54 GIIDDTDQNYSQRIDNIRQQLADSQNK-Y-KTSNRVIVETINILKPGLEGAQQLDENYGHVSTELRRRIVTLKQRVATQV 131 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT-T-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhhHHHHHHHHHHHHHHHHhh-c-chHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788999999999999999988654 1 111222222 223333333444444434332111 111122
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc
Q 047357 72 LAKLREYKSDLNKLKREFKRVSS 94 (219)
Q Consensus 72 ~~k~~~~~~~l~~l~~~~~~~~~ 94 (219)
+.++-++..+..+..++.+++.
T Consensus 132 -~~IrvLq~~l~~q~skIQRLE~ 153 (491)
T 1m1j_A 132 -NRIKALQNSIQEQVVEMKRLEV 153 (491)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555566666666666666654
No 110
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=27.42 E-value=2.9e+02 Score=23.51 Aligned_cols=60 Identities=8% Similarity=0.175 Sum_probs=32.0
Q ss_pred ChhHHHHHHHHHHchHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047357 31 DGDQKKEKYSEIQSGLDDADALIRKMDLEARSLQPNVKAMLLAKLREYKSDLNKLKREFKR 91 (219)
Q Consensus 31 ~~~~~~~~~~~~~~~l~~a~~~~~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~~l~~~~~~ 91 (219)
+...|...+..++.....+.....+++..-..+... -..-..++-.+-+.+.+|-+++.+
T Consensus 62 ~~~~R~~vl~~a~~La~~~n~~~~~L~~~~~~~n~~-i~~~V~~iN~l~~qIa~LN~qI~~ 121 (463)
T 2d4y_A 62 DPAARQALIGKAEGLVNQFKTTDQYLRDQDKQVNIA-IGSSVAQINNYAKQIANLNDQISR 121 (463)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777766666665555432222211 123344445555555555555543
No 111
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=27.18 E-value=1.5e+02 Score=20.20 Aligned_cols=53 Identities=11% Similarity=0.238 Sum_probs=25.1
Q ss_pred HHHHHchHHHHHHHHHHHHHHHhcCChh--HHHHHHHHHHHHHHHHHHHHHHHHh
Q 047357 39 YSEIQSGLDDADALIRKMDLEARSLQPN--VKAMLLAKLREYKSDLNKLKREFKR 91 (219)
Q Consensus 39 ~~~~~~~l~~a~~~~~~m~~E~~~~~~~--~r~~~~~k~~~~~~~l~~l~~~~~~ 91 (219)
+..+...|..|++.+..+..++..+... .+..-..++.=++....-++.+|..
T Consensus 26 i~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~a 80 (110)
T 2v4h_A 26 LEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQA 80 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 4445555555555555555554443321 1223334455555555555555543
No 112
>3fav_A ESAT-6-like protein ESXB; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_A
Probab=27.02 E-value=1.3e+02 Score=19.38 Aligned_cols=62 Identities=19% Similarity=0.230 Sum_probs=36.6
Q ss_pred ChhHHHHHHHHHHchHHHHHHHHHHHHHHHhcCCh----hHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047357 31 DGDQKKEKYSEIQSGLDDADALIRKMDLEARSLQP----NVKAMLLAKLREYKSDLNKLKREFKRV 92 (219)
Q Consensus 31 ~~~~~~~~~~~~~~~l~~a~~~~~~m~~E~~~~~~----~~r~~~~~k~~~~~~~l~~l~~~~~~~ 92 (219)
+++.-......+...-.+++..+..|+.++..+.. .....|.....+.+....++...+..+
T Consensus 8 ~~~~l~~~A~~~~~~~~~l~~~l~~l~~~~~~L~~~W~G~A~~af~~~~~~w~~~~~~l~~~L~~i 73 (101)
T 3fav_A 8 DAATLAQEAGNFERISGDLKTQIDQVESTAGSLQGQWRGAAGTAAQAAVVRFQEAANKQKQELDEI 73 (101)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566677778888888888888888877752 233455555555555555554444433
No 113
>3arc_I Photosystem II reaction center protein I; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_I* 2axt_I* 3bz1_I* 3bz2_I* 3kzi_I* 3prq_I* 3prr_I* 3a0b_I* 3a0h_I*
Probab=26.92 E-value=69 Score=17.34 Aligned_cols=13 Identities=15% Similarity=0.031 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHH
Q 047357 192 RNKWIVGSIIVAL 204 (219)
Q Consensus 192 ~dk~Il~~ii~~l 204 (219)
+=|+..|.+++++
T Consensus 3 tLKi~Vy~vV~ff 15 (38)
T 3arc_I 3 TLKITVYIVVTFF 15 (38)
T ss_dssp HHHHHHHHHHHHH
T ss_pred eEEeeehhHHHHH
Confidence 3466666665554
No 114
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=26.18 E-value=1.3e+02 Score=19.05 Aligned_cols=29 Identities=28% Similarity=0.508 Sum_probs=23.9
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047357 63 LQPNVKAMLLAKLREYKSDLNKLKREFKR 91 (219)
Q Consensus 63 ~~~~~r~~~~~k~~~~~~~l~~l~~~~~~ 91 (219)
.++..+..+..++.+|....+.|+.-+..
T Consensus 51 ~~~~~k~~l~~k~~eYl~RAE~Lk~~l~~ 79 (85)
T 2v6x_A 51 KNPKSKDLIRAKFTEYLNRAEQLKKHLES 79 (85)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34567789999999999999999987753
No 115
>2lch_A Protein OR38; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Thermotoga maritima}
Probab=25.68 E-value=1.3e+02 Score=20.05 Aligned_cols=29 Identities=14% Similarity=0.080 Sum_probs=24.3
Q ss_pred CchhHHHHHHHHHHHHHHHHHhhhhhcCC
Q 047357 1 MSEVFEGYERQYCELSTNLSRKCSSASLL 29 (219)
Q Consensus 1 Ms~~f~~ye~e~~~~~~~i~~~l~~~~~~ 29 (219)
|.++++.|-+|....+..+...+..+...
T Consensus 4 ~~el~~~F~~Ea~e~l~~l~~~l~~le~~ 32 (113)
T 2lch_A 4 HQEYIKKVTDELKELIQNVNDDIKEVEKN 32 (113)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 44788999999999999999999888654
No 116
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=25.63 E-value=2e+02 Score=21.05 Aligned_cols=86 Identities=7% Similarity=-0.037 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhcCC-------CChhH-------HHHHHHHHHchHHHHHHHHHHHHHHHhcCC--hhH
Q 047357 4 VFEGYERQYCELSTNLSRKCSSASLL-------PDGDQ-------KKEKYSEIQSGLDDADALIRKMDLEARSLQ--PNV 67 (219)
Q Consensus 4 ~f~~ye~e~~~~~~~i~~~l~~~~~~-------~~~~~-------~~~~~~~~~~~l~~a~~~~~~m~~E~~~~~--~~~ 67 (219)
.|-+.-+++...+..|...+..+.++ |++++ -.....++......+...++.|+......+ .+.
T Consensus 6 ~f~~~~~~i~~~i~~i~~~v~~L~~l~~~~l~~~~~~~~~~~~~~i~~l~~~i~~~~~~~~~~lk~l~~~~~~~r~~k~~ 85 (196)
T 1fio_A 6 GFMNKISQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLKNEIKSAQRDGIHDTNKQAQ 85 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHH
Confidence 35555666666666666666655322 22221 123445566666667777777776532111 112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 047357 68 KAMLLAKLREYKSDLNKLKREF 89 (219)
Q Consensus 68 r~~~~~k~~~~~~~l~~l~~~~ 89 (219)
...+..++...-.+|..++..+
T Consensus 86 ~~~L~~~f~~~~~~fq~~Q~~~ 107 (196)
T 1fio_A 86 AENSRQRFLKLIQDYRIVDSNY 107 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 2334444444444444444444
No 117
>2y69_D Cytochrome C oxidase subunit 4 isoform 1; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=25.31 E-value=69 Score=23.74 Aligned_cols=23 Identities=13% Similarity=0.309 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q 047357 195 WIVGSIIVALVIAIIFILFYKLS 217 (219)
Q Consensus 195 ~Il~~ii~~l~~~i~~vi~~k~~ 217 (219)
.|+.++++++.+.+++++|.+.+
T Consensus 102 ~V~ggv~~~i~~s~~~f~~~r~~ 124 (169)
T 2y69_D 102 TVVGAAMFFIGFTALLLIWEKHY 124 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666666665543
No 118
>3fav_B ESAT-6, 6 kDa early secretory antigenic target; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_B
Probab=25.03 E-value=1.3e+02 Score=18.89 Aligned_cols=62 Identities=10% Similarity=0.127 Sum_probs=34.5
Q ss_pred ChhHHHHHHHHHHchHHHHHHHHHHHHHHHhcCCh----hHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047357 31 DGDQKKEKYSEIQSGLDDADALIRKMDLEARSLQP----NVKAMLLAKLREYKSDLNKLKREFKRV 92 (219)
Q Consensus 31 ~~~~~~~~~~~~~~~l~~a~~~~~~m~~E~~~~~~----~~r~~~~~k~~~~~~~l~~l~~~~~~~ 92 (219)
+++.-......+...-++++..+..|+..+..+.. .....|.....+......++...+..+
T Consensus 6 ~~~~l~~~a~~~~~~~~~i~~~l~~l~~~v~~l~~~W~G~A~~af~~~~~~w~~~~~~~~~~L~~i 71 (94)
T 3fav_B 6 NFAGIEAAASAIQGNVTSIHSLLDEGKQSLTKLAAAWGGSGSEAYQGVQQKWDATATELNNALQNL 71 (94)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGTCTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556677777777777778888777776642 122345555555554554444444433
No 119
>1v54_J Cytochrome C oxidase polypeptide VIIA-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.4.1 PDB: 1oco_J* 1occ_J* 1ocz_J* 1ocr_J* 1v55_J* 2dyr_J* 2dys_J* 2eij_J* 2eik_J* 2eil_J* 2eim_J* 2ein_J* 2occ_J* 2ybb_U* 2zxw_J* 3abk_J* 3abl_J* 3abm_J* 3ag1_J* 3ag2_J* ...
Probab=24.94 E-value=1.2e+02 Score=18.20 Aligned_cols=24 Identities=4% Similarity=0.174 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 047357 191 TRNKWIVGSIIVALVIAIIFILFY 214 (219)
Q Consensus 191 ~~dk~Il~~ii~~l~~~i~~vi~~ 214 (219)
..|.++..+.+++++++++..+|.
T Consensus 26 ~sd~~Ly~~t~~l~~~g~~~~~y~ 49 (59)
T 1v54_J 26 ATDNILYRVTMTLCLGGTLYSLYC 49 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCceeHHHHHHHHHHHHHHHHHHH
Confidence 345555566666766666655553
No 120
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=24.46 E-value=1.6e+02 Score=19.53 Aligned_cols=28 Identities=4% Similarity=0.118 Sum_probs=15.6
Q ss_pred HHHHHHHHHchHHHHHHHHHHHHHHHhc
Q 047357 35 KKEKYSEIQSGLDDADALIRKMDLEARS 62 (219)
Q Consensus 35 ~~~~~~~~~~~l~~a~~~~~~m~~E~~~ 62 (219)
.......++..++.++....+.+-|+.+
T Consensus 21 a~drae~~e~~~k~~e~~~~~~E~Ei~s 48 (101)
T 3u1c_A 21 ALDRAEQAEADKKAAEERSKQLEDDIVQ 48 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3334455555666666666666665554
No 121
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=24.27 E-value=1.7e+02 Score=19.73 Aligned_cols=17 Identities=6% Similarity=0.048 Sum_probs=7.1
Q ss_pred HchHHHHHHHHHHHHHH
Q 047357 43 QSGLDDADALIRKMDLE 59 (219)
Q Consensus 43 ~~~l~~a~~~~~~m~~E 59 (219)
+..+.+.++.+-++.+|
T Consensus 36 KD~LEe~eE~~aql~Re 52 (103)
T 4h22_A 36 KDMLLELEEQLAESRRQ 52 (103)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444443
No 122
>2y69_J Cytochrome C oxidase polypeptide 7A1; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=24.13 E-value=1.2e+02 Score=19.52 Aligned_cols=24 Identities=4% Similarity=0.174 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 047357 191 TRNKWIVGSIIVALVIAIIFILFY 214 (219)
Q Consensus 191 ~~dk~Il~~ii~~l~~~i~~vi~~ 214 (219)
..|.++..+.+++++++++..+|.
T Consensus 47 rsd~~Ly~~t~~l~~~G~~~~ly~ 70 (80)
T 2y69_J 47 ATDNILYRVTMTLCLGGTLYSLYC 70 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccceeHHHHHHHHHHHHHHHHHHH
Confidence 445666666777777776665554
No 123
>1q90_L Cytochrome B6F complex subunit PETL; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.24.1
Probab=24.02 E-value=87 Score=16.36 Aligned_cols=22 Identities=5% Similarity=-0.025 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 047357 195 WIVGSIIVALVIAIIFILFYKL 216 (219)
Q Consensus 195 ~Il~~ii~~l~~~i~~vi~~k~ 216 (219)
++-|+++++..+++..++|.-+
T Consensus 4 iisYf~fL~~al~~t~~lfiGL 25 (32)
T 1q90_L 4 ITSYVGLLIGALVFTLGIYLGL 25 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666666666544
No 124
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=23.40 E-value=3.7e+02 Score=23.41 Aligned_cols=12 Identities=25% Similarity=0.487 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 047357 8 YERQYCELSTNL 19 (219)
Q Consensus 8 ye~e~~~~~~~i 19 (219)
|..++..+..++
T Consensus 7 yq~~la~yq~el 18 (497)
T 3iox_A 7 YQAKLTAYQTEL 18 (497)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444443333
No 125
>1u2m_A Histone-like protein HLP-1; coiled coil, chaperone; 2.30A {Escherichia coli} SCOP: f.48.1.1 PDB: 1sg2_A
Probab=23.37 E-value=42 Score=23.66 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhh
Q 047357 4 VFEGYERQYCELSTNLSRKCSSA 26 (219)
Q Consensus 4 ~f~~ye~e~~~~~~~i~~~l~~~ 26 (219)
.|..|..++.....++......+
T Consensus 31 ~~~~~~~el~~~~~el~~~~~~l 53 (143)
T 1u2m_A 31 EFKGRASELQRMETDLQAKMKKL 53 (143)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555544444
No 126
>2gsm_B Cytochrome C oxidase subunit 2; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} SCOP: b.6.1.2 f.17.2.1 PDB: 3dtu_B* 3fye_B* 3fyi_B* 3omi_B* 3om3_B* 3oma_B* 3omn_B* 1m56_B* 1m57_B*
Probab=23.24 E-value=77 Score=25.14 Aligned_cols=21 Identities=14% Similarity=0.339 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q 047357 197 VGSIIVALVIAIIFILFYKLS 217 (219)
Q Consensus 197 l~~ii~~l~~~i~~vi~~k~~ 217 (219)
+.++|++++.++++...+|+.
T Consensus 39 i~~~I~v~V~~ll~~~~~r~r 59 (262)
T 2gsm_B 39 IIAAITIFVTLLILYAVWRFH 59 (262)
T ss_dssp HHHHHHHHHHHHHHHHHHHSB
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 333444444444444444443
No 127
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=21.96 E-value=42 Score=21.20 Aligned_cols=8 Identities=63% Similarity=0.987 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 047357 205 VIAIIFIL 212 (219)
Q Consensus 205 ~~~i~~vi 212 (219)
+++|++++
T Consensus 32 i~GI~iil 39 (74)
T 2zxe_G 32 VIGIIILL 39 (74)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 33444343
No 128
>2w1k_A Putative sortase; pilus, pneumococcus, pathogenicity, transferase; HET: MES; 2.14A {Streptococcus pneumoniae}
Probab=21.88 E-value=19 Score=28.56 Aligned_cols=21 Identities=24% Similarity=0.786 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 047357 194 KWIVGSIIVALVIAIIFILFY 214 (219)
Q Consensus 194 k~Il~~ii~~l~~~i~~vi~~ 214 (219)
.+.+.+++++++++|++++|+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~ 244 (252)
T 2w1k_A 224 QWLYRGLVVLAFLGILFVLWK 244 (252)
T ss_dssp ---------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555555544
No 129
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=21.67 E-value=3.2e+02 Score=22.02 Aligned_cols=49 Identities=6% Similarity=0.034 Sum_probs=29.1
Q ss_pred HHHchHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047357 41 EIQSGLDDADALIRKMDLEARSLQPNVKAMLLAKLREYKSDLNKLKREFKRV 92 (219)
Q Consensus 41 ~~~~~l~~a~~~~~~m~~E~~~~~~~~r~~~~~k~~~~~~~l~~l~~~~~~~ 92 (219)
.....+.++++.++.+|.++...+. .....++...+.++-.+++.+.-.
T Consensus 168 ~~~~~l~~l~~~i~~lE~~l~~~~~---~~~l~~l~~lrr~l~~lrr~l~~~ 216 (339)
T 4ev6_A 168 SYSRILMNLEDELEELEDKLLAGYD---REVMEKILGLRKTLVYFHKSLIAN 216 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHTSTTCCC---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhh---hhHHHHHHHHHHHHHHHHHHhhhh
Confidence 3344455555666666655544333 345667777777777777766543
No 130
>3vmt_A Monofunctional glycosyltransferase; transmembrane, bacterial cell WALL SYNT membrane; HET: LHI; 2.30A {Staphylococcus aureus} PDB: 3vmr_A* 3vms_A 3vmq_A*
Probab=21.17 E-value=28 Score=27.81 Aligned_cols=24 Identities=8% Similarity=0.312 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 047357 186 MSRRMTRNKWIVGSIIVALVIAII 209 (219)
Q Consensus 186 m~rr~~~dk~Il~~ii~~l~~~i~ 209 (219)
..++....+++.++++++++++++
T Consensus 27 ~~kk~~~~~~~~~~~~~~l~~~~~ 50 (263)
T 3vmt_A 27 PPKKKKSKRILLKILLTILIIIAL 50 (263)
T ss_dssp --------CCTTHHHHHHHHHHHH
T ss_pred chhhhhHHHHHHHHHHHHHHHHHH
Confidence 334444445555444444433333
No 131
>2lhr_A Iron-regulated surface determinant protein H; heme acquisition, iron uptake, NEAT domain, hemoglobin recep metal transport; NMR {Staphylococcus aureus subsp}
Probab=20.60 E-value=1.6e+02 Score=18.19 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=18.4
Q ss_pred hcCChhHHHHHHHHHHHHHHHHHH
Q 047357 61 RSLQPNVKAMLLAKLREYKSDLNK 84 (219)
Q Consensus 61 ~~~~~~~r~~~~~k~~~~~~~l~~ 84 (219)
..+|...+++|..++.+.+.++++
T Consensus 37 dkLPeklkaeYk~KL~~tk~~Ld~ 60 (78)
T 2lhr_A 37 EKLPEKYKAEYKKKLDQTRVELAD 60 (78)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHH
Confidence 458888888888888887776654
No 132
>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton, hemidesmosomes epidermolysis bullosa, structural protein; 2.05A {Homo sapiens} PDB: 2odu_A
Probab=20.53 E-value=3e+02 Score=21.23 Aligned_cols=27 Identities=7% Similarity=-0.022 Sum_probs=23.5
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhcCC
Q 047357 3 EVFEGYERQYCELSTNLSRKCSSASLL 29 (219)
Q Consensus 3 ~~f~~ye~e~~~~~~~i~~~l~~~~~~ 29 (219)
..|++|+.....++.=|...+..+..-
T Consensus 11 ~~~~eYe~~as~Ll~WI~~~~~~l~~r 37 (235)
T 2odv_A 11 LRWQEYRELVLLLLQWMRHHTAAFEER 37 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 468999999999999999999888653
No 133
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=20.40 E-value=2.2e+02 Score=19.62 Aligned_cols=53 Identities=9% Similarity=0.298 Sum_probs=26.3
Q ss_pred HHHchHHHHHHHHHHHHHHHhcCCh----------hHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 047357 41 EIQSGLDDADALIRKMDLEARSLQP----------NVKAMLLAKLREYKSDLNKLKREFKRVS 93 (219)
Q Consensus 41 ~~~~~l~~a~~~~~~m~~E~~~~~~----------~~r~~~~~k~~~~~~~l~~l~~~~~~~~ 93 (219)
..+..+.++...+..++.|+.++.. .....|...+..++..+..++..+.+++
T Consensus 33 ~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r 95 (129)
T 3tnu_B 33 NTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAK 95 (129)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3444455555555555555544321 1123445555566666666666665554
Done!