BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047359
(440 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O49558|PP331_ARATH Pentatricopeptide repeat-containing protein At4g21170
OS=Arabidopsis thaliana GN=At4g21170 PE=3 SV=2
Length = 585
Score = 366 bits (939), Expect = e-100, Method: Compositional matrix adjust.
Identities = 190/423 (44%), Positives = 284/423 (67%), Gaps = 6/423 (1%)
Query: 22 YSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPN 81
Y+ KG +GLEV+ MR P+ SA N+LL +L ++N+ R+A CLY AMVR+G+ +
Sbjct: 163 YALKGSHHNGLEVFGFMRRLRLSPSQSAYNSLLGSLVKENQFRVALCLYSAMVRNGIVSD 222
Query: 82 KFTWSLVAQILCRSGKFEVVLGLLDSGIYSSVMYNLVIDFYSKKGDFGAAFDRLNEMCNG 141
+ TW L+AQILC G+ + V L+++G+ S +Y +++ YS+ G+F A F ++EM +
Sbjct: 223 ELTWDLIAQILCEQGRSKSVFKLMETGVESCKIYTNLVECYSRNGEFDAVFSLIHEM-DD 281
Query: 142 RNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKT 201
+ L F +Y +LD A R E D+++ LMVEKK + + ND +I++L DMGKT
Sbjct: 282 KKLELSFCSYGCVLDDACRLGDAEFIDKVLCLMVEKKFVTLGDSAVNDKIIERLCDMGKT 341
Query: 202 YAAEMIFKRACD-EKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRD-SDYY 259
+A+EM+F++AC+ E + L D T GCMLKALS++ R KEA+ +Y +I +GITV D S Y
Sbjct: 342 FASEMLFRKACNGETVRLWDSTYGCMLKALSRKKRTKEAVDVYRMICRKGITVLDESCYI 401
Query: 260 AFVNVLCKEHQPEEVCGLLR-DVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLD 318
F N LC++ E L DV++RG++PC +LS +AS C K +WK E+LL +V++
Sbjct: 402 EFANALCRDDNSSEEEEELLVDVIKRGFVPCTHKLSEVLASMCRKRRWKSAEKLLDSVME 461
Query: 319 KGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGR--M 376
+ DSF C LME YC + +++KA+ LH KI+K+KGSLDV Y+ +LD L + +
Sbjct: 462 MEVYFDSFACGLLMERYCRSGKLEKALVLHEKIKKMKGSLDVNAYNAVLDRLMMRQKEMV 521
Query: 377 EEAVRIFDYMKELKVVSSSSFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDEATYKQVI 436
EEAV +F+YMKE+ V+S SF I++ LC +KE++KAM++HDEML++G KPD TYK++I
Sbjct: 522 EEAVVVFEYMKEINSVNSKSFTIMIQGLCRVKEMKKAMRSHDEMLRLGLKPDLVTYKRLI 581
Query: 437 SGF 439
GF
Sbjct: 582 LGF 584
>sp|Q9LFC5|PP360_ARATH Pentatricopeptide repeat-containing protein At5g01110
OS=Arabidopsis thaliana GN=At5g01110 PE=2 SV=1
Length = 729
Score = 151 bits (382), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 113/446 (25%), Positives = 213/446 (47%), Gaps = 20/446 (4%)
Query: 4 SCEGRDSQSDALSLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEI 63
+C DS D L++ Y + E + ++R GF ++ ACNAL+ +L R +
Sbjct: 160 NCGSNDSVFD---LLIRTYVQARKLREAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWV 216
Query: 64 RLASCLYGAMVRDGVSPNKFTWSLVAQILCRSGKFEVVLGLL----DSGIYSS-VMYNLV 118
LA +Y + R GV N +T +++ LC+ GK E V L + G+Y V YN +
Sbjct: 217 ELAWGVYQEISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTL 276
Query: 119 IDFYSKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKK 178
I YS KG AF+ +N M G+ +PG TY+++++G ++ K E + + M+
Sbjct: 277 ISAYSSKGLMEEAFELMNAM-PGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSG 335
Query: 179 LLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTC-GCMLKALSKEGRVK 237
L P + ++ + G E +F + + D C M+ ++ G +
Sbjct: 336 LSPDS--TTYRSLLMEACKKGDVVETEKVFSDMRSRDV-VPDLVCFSSMMSLFTRSGNLD 392
Query: 238 EAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRF- 296
+A+ ++ + E G+ + Y + C++ L +++++G CAM++ +
Sbjct: 393 KALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQG---CAMDVVTYN 449
Query: 297 --VASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKL 354
+ C + E ++L + + ++ L DS+ + L++ +C + A+ L K+++
Sbjct: 450 TILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEK 509
Query: 355 KGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSS-SFVIVVSRLCHLKELRKA 413
+ LDV TY+ LLDG K G ++ A I+ M +++ + S+ I+V+ LC L +A
Sbjct: 510 RIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEA 569
Query: 414 MKNHDEMLKMGHKPDEATYKQVISGF 439
+ DEM+ KP +I G+
Sbjct: 570 FRVWDEMISKNIKPTVMICNSMIKGY 595
Score = 125 bits (314), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 108/459 (23%), Positives = 194/459 (42%), Gaps = 54/459 (11%)
Query: 18 VLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDG 77
++ YS KGL + E+ M GF P V N +++ L + + A ++ M+R G
Sbjct: 276 LISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSG 335
Query: 78 VSPNKFTW--------------------------SLVAQILC---------RSGKFEVVL 102
+SP+ T+ +V ++C RSG + L
Sbjct: 336 LSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKAL 395
Query: 103 GLLDSG-----IYSSVMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDG 157
+S I +V+Y ++I Y +KG A + NEM + TY++IL G
Sbjct: 396 MYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQ-QGCAMDVVTYNTILHG 454
Query: 158 ARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSD----MGKTYAAEMIFKRACD 213
+ + +D++ M E+ L P + Y + L D +G A +F++ +
Sbjct: 455 LCKRKMLGEADKLFNEMTERALFP------DSYTLTILIDGHCKLGNLQNAMELFQKMKE 508
Query: 214 EKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEE 273
++I L T +L K G + A +I+ + + I Y VN LC + E
Sbjct: 509 KRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAE 568
Query: 274 VCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLME 333
+ +++ + P M + + C G + E L ++ +G + D ++L+
Sbjct: 569 AFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCISYNTLIY 628
Query: 334 YYCSNRQIDKAIALHIKIEKLKGSL--DVATYDVLLDGLFKDGRMEEAVRIFDYMKELKV 391
+ + KA L K+E+ +G L DV TY+ +L G + +M+EA + M E V
Sbjct: 629 GFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQMKEAEVVLRKMIERGV 688
Query: 392 -VSSSSFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDE 429
S++ +++ L +A + HDEML+ G PD+
Sbjct: 689 NPDRSTYTCMINGFVSQDNLTEAFRIHDEMLQRGFSPDD 727
>sp|Q9CA58|PP120_ARATH Putative pentatricopeptide repeat-containing protein At1g74580
OS=Arabidopsis thaliana GN=At1g74580 PE=3 SV=1
Length = 763
Score = 134 bits (338), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 121/478 (25%), Positives = 215/478 (44%), Gaps = 45/478 (9%)
Query: 4 SCEGRDSQSDALSLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEI 63
S +G + A V+ + + +G E++ M G +S N LL L ++ ++
Sbjct: 173 SSQGCEMNVVAYCTVVGGFYEENFKAEGYELFGKMLASGVSLCLSTFNKLLRVLCKKGDV 232
Query: 64 RLASCLYGAMVRDGVSPNKFTWSLVAQILCRSGKFE----VVLGLLDSGIYSSVM-YNLV 118
+ L +++ GV PN FT++L Q LC+ G+ + +V L++ G V+ YN +
Sbjct: 233 KECEKLLDKVIKRGVLPNLFTYNLFIQGLCQRGELDGAVRMVGCLIEQGPKPDVITYNNL 292
Query: 119 IDFYSKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKK 178
I K F A L +M N L P TY++++ G + ++++RIVG V
Sbjct: 293 IYGLCKNSKFQEAEVYLGKMVN-EGLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFNG 351
Query: 179 LLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKE 238
+P F + +I L G+T A +F A + I+ ++K LS +G + E
Sbjct: 352 FVPDQFTYRS--LIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGMILE 409
Query: 239 AIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVA 298
A Q+ + +SE+G+ + VN LCK + GL++ ++ +GY P + +
Sbjct: 410 AAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIH 469
Query: 299 SQCGKGKWKEVEELLSAVLDKGL---------LLDSFCCSS------------------- 330
+ K + E+L +LD G+ LL+ C +S
Sbjct: 470 GYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAP 529
Query: 331 -------LMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIF 383
L+E C R++D+A+ L +++ + D T+ L+DG K+G ++ A +F
Sbjct: 530 NLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLF 589
Query: 384 DYMKELKVVSSS--SFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDEATYKQVISGF 439
M+E VSSS ++ I++ + A K EM+ PD TY+ ++ GF
Sbjct: 590 RKMEEAYKVSSSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGF 647
Score = 87.4 bits (215), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 100/494 (20%), Positives = 186/494 (37%), Gaps = 79/494 (15%)
Query: 22 YSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPN 81
Y KG + + V+ M Y P V + NA++ L A +Y M G++P+
Sbjct: 86 YGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVYMRMRDRGITPD 145
Query: 82 KFTWSLVAQILCRSGKFEVVLGLLDS------------------GIYSS----------- 112
+++++ + C++ + L LL++ G Y
Sbjct: 146 VYSFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKAEGYELFG 205
Query: 113 -----------VMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDGARRY 161
+N ++ KKGD L+++ R + P TY+ + G +
Sbjct: 206 KMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIK-RGVLPNLFTYNLFIQGLCQR 264
Query: 162 EKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDD 221
+ + + R+VG ++E+ P N +I L K AE+ + +E +E
Sbjct: 265 GELDGAVRMVGCLIEQGPKPDVITYNN--LIYGLCKNSKFQEAEVYLGKMVNEGLEPDSY 322
Query: 222 TCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPE--------- 272
T ++ K G V+ A +I G Y + ++ LC E +
Sbjct: 323 TYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEA 382
Query: 273 --------------------------EVCGLLRDVVERGYIPCAMELSRFVASQCGKGKW 306
E L ++ E+G IP + V C G
Sbjct: 383 LGKGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCV 442
Query: 307 KEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVL 366
+ + L+ ++ KG D F + L+ Y + +++ A+ + + DV TY+ L
Sbjct: 443 SDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVYTYNSL 502
Query: 367 LDGLFKDGRMEEAVRIFDYMKELKVVSS-SSFVIVVSRLCHLKELRKAMKNHDEMLKMGH 425
L+GL K + E+ + + M E + +F I++ LC ++L +A+ +EM
Sbjct: 503 LNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSV 562
Query: 426 KPDEATYKQVISGF 439
PD T+ +I GF
Sbjct: 563 NPDAVTFGTLIDGF 576
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 77/369 (20%), Positives = 157/369 (42%), Gaps = 29/369 (7%)
Query: 23 SHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNK 82
S++G+ ++ ++ M G +P V N L++ L + + A L M+ G P+
Sbjct: 402 SNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDI 461
Query: 83 FTWSLV----AQILCRSGKFEVVLGLLDSGIYSSV-MYNLVIDFYSKKGDFGAAFDRLNE 137
FT++++ + L E++ +LD+G+ V YN +++ K F +
Sbjct: 462 FTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKT 521
Query: 138 MCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSD 197
M + P T++ +L+ RY K + + ++ M K + P G +I
Sbjct: 522 MVE-KGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGT--LIDGFCK 578
Query: 198 MGKTYAAEMIFKRACDE-KIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDS 256
G A +F++ + K+ T ++ A +++ V A +++ + +R +
Sbjct: 579 NGDLDGAYTLFRKMEEAYKVSSSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGY 638
Query: 257 DYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAV 316
Y V+ CK L +++E G+IP L R + C + + E ++ +
Sbjct: 639 TYRLMVDGFCKTGNVNLGYKFLLEMMENGFIPSLTTLGRVINCLCVEDRVYEAAGIIHRM 698
Query: 317 LDKGLL---LDSFCCSSLMEYYCSNRQIDK--AIALHIKIEKL--KGSLDVATYDVLLDG 369
+ KGL+ +++ C +DK A + +E L K + Y++L DG
Sbjct: 699 VQKGLVPEAVNTIC------------DVDKKEVAAPKLVLEDLLKKSCITYYAYELLFDG 746
Query: 370 LFKDGRMEE 378
L +D R+ +
Sbjct: 747 L-RDKRLRK 754
Score = 52.8 bits (125), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 72/340 (21%), Positives = 132/340 (38%), Gaps = 92/340 (27%)
Query: 182 KHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCML--------KALSKE 233
KH LS VI+KL GK A E + ++++++ ML K ++
Sbjct: 37 KHTLSTYRSVIEKLGYYGKFEAMEEVL-------VDMRENVGNHMLEGVYVGAMKNYGRK 89
Query: 234 GRVKEAI-----------------------------------QIYHLISERGITVRDSDY 258
G+V+EA+ ++Y + +RGIT D
Sbjct: 90 GKVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVYMRMRDRGIT---PDV 146
Query: 259 YAF---VNVLCKEHQPEEVCGLLRDVVERG-------YIP-------------------- 288
Y+F + CK +P LL ++ +G Y
Sbjct: 147 YSFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKAEGYELFGK 206
Query: 289 --------CAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQ 340
C ++ + C KG KE E+LL V+ +G+L + F + ++ C +
Sbjct: 207 MLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLCQRGE 266
Query: 341 IDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEA-VRIFDYMKELKVVSSSSFVI 399
+D A+ + + + DV TY+ L+ GL K+ + +EA V + + E S ++
Sbjct: 267 LDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNT 326
Query: 400 VVSRLCHLKELRKAMKNHDEMLKMGHKPDEATYKQVISGF 439
+++ C ++ A + + + G PD+ TY+ +I G
Sbjct: 327 LIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGL 366
>sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775,
mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2
SV=1
Length = 644
Score = 134 bits (337), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 103/417 (24%), Positives = 194/417 (46%), Gaps = 9/417 (2%)
Query: 30 DGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVA 89
+ LE+ M G P + N L++ L ++ A L MV G PN+ T+ V
Sbjct: 176 EALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVL 235
Query: 90 QILCRSGKFEVVLGLL----DSGI-YSSVMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNL 144
++C+SG+ + + LL + I +V Y+++ID K G AF+ NEM +
Sbjct: 236 NVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEM-EIKGF 294
Query: 145 TPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAA 204
TY++++ G + + +++ M+++K+ P + +I GK A
Sbjct: 295 KADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPN--VVTFSVLIDSFVKEGKLREA 352
Query: 205 EMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNV 264
+ + K I T ++ KE R++EAIQ+ L+ +G + +N
Sbjct: 353 DQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILING 412
Query: 265 LCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLD 324
CK ++ ++ L R++ RG I + + V C GK + ++L ++ + + D
Sbjct: 413 YCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPD 472
Query: 325 SFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFD 384
L++ C N +++KA+ + KIEK K LD+ Y +++ G+ ++++A +F
Sbjct: 473 IVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFC 532
Query: 385 YMKELKV-VSSSSFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDEATYKQVISGFM 440
+ V + + ++ I++S LC L KA +M + GH PDE TY +I +
Sbjct: 533 SLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEGHAPDELTYNILIRAHL 589
Score = 105 bits (263), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 88/422 (20%), Positives = 194/422 (45%), Gaps = 21/422 (4%)
Query: 30 DGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVA 89
D ++++R M +P V N L A+ + + L L M G++ + +T S++
Sbjct: 71 DAVDLFRDMIQSRPLPTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSIMI 130
Query: 90 QILCRSGKFEVVLGLL----------DSGIYSSVMYNLVIDFYSKKGDFGAAFDRLNEMC 139
CR K + D+ I+++++ L ++ + + DR+ EM
Sbjct: 131 NCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLE--CRVSEALELVDRMVEMG 188
Query: 140 NGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMG 199
+ P T +++++G K + ++ MVE P G V+ + G
Sbjct: 189 H----KPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGP--VLNVMCKSG 242
Query: 200 KTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYY 259
+T A + ++ + I+L ++ L K+G + A +++ + +G Y
Sbjct: 243 QTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYN 302
Query: 260 AFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDK 319
+ C + ++ LLRD+++R P + S + S +GK +E ++LL ++ +
Sbjct: 303 TLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQR 362
Query: 320 GLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKG-SLDVATYDVLLDGLFKDGRMEE 378
G+ ++ +SL++ +C ++++AI + + + KG D+ T+++L++G K R+++
Sbjct: 363 GIAPNTITYNSLIDGFCKENRLEEAIQM-VDLMISKGCDPDIMTFNILINGYCKANRIDD 421
Query: 379 AVRIFDYMKELKVVSSS-SFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDEATYKQVIS 437
+ +F M V++++ ++ +V C +L A K EM+ +PD +YK ++
Sbjct: 422 GLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLD 481
Query: 438 GF 439
G
Sbjct: 482 GL 483
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/308 (20%), Positives = 136/308 (44%), Gaps = 8/308 (2%)
Query: 22 YSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPN 81
+ + G + DG ++ R M P V + L+D+ ++ ++R A L M++ G++PN
Sbjct: 308 FCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPN 367
Query: 82 KFTWSLVAQILCRSGKFEVVLGLLD----SGIYSSVM-YNLVIDFYSKKGDFGAAFDRLN 136
T++ + C+ + E + ++D G +M +N++I+ Y K +
Sbjct: 368 TITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFR 427
Query: 137 EMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLS 196
EM + R + TY++++ G + K EV+ ++ MV +++ P + ++ L
Sbjct: 428 EM-SLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPD--IVSYKILLDGLC 484
Query: 197 DMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDS 256
D G+ A IF + K+EL ++ + +V +A ++ + +G+ +
Sbjct: 485 DNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDAR 544
Query: 257 DYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAV 316
Y ++ LC++ + L R + E G+ P + + + + G EL+ +
Sbjct: 545 AYNIMISELCRKDSLSKADILFRKMTEEGHAPDELTYNILIRAHLGDDDATTAAELIEEM 604
Query: 317 LDKGLLLD 324
G D
Sbjct: 605 KSSGFPAD 612
Score = 65.5 bits (158), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 85/185 (45%), Gaps = 3/185 (1%)
Query: 258 YYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVL 317
+ +N LC E + E L+ +VE G+ P + L+ V C GK + L+ ++
Sbjct: 161 FNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMV 220
Query: 318 DKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRME 377
+ G + ++ C + Q A+ L K+E+ LD Y +++DGL KDG ++
Sbjct: 221 ETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLD 280
Query: 378 EAVRIFDYMKELKVVSSS--SFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDEATYKQV 435
A +F+ M E+K + ++ ++ C+ K +M+K P+ T+ +
Sbjct: 281 NAFNLFNEM-EIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVL 339
Query: 436 ISGFM 440
I F+
Sbjct: 340 IDSFV 344
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 95/196 (48%), Gaps = 6/196 (3%)
Query: 243 YHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCG 302
+ S+R ++ RD V + + ++ L RD+++ +P ++ +R ++
Sbjct: 46 FSTFSDRNLSYRDKLSSGLVGI-----KADDAVDLFRDMIQSRPLPTVIDFNRLFSAIAK 100
Query: 303 KGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVAT 362
+++ V L + KG+ + S ++ +C R++ A + KI KL D
Sbjct: 101 TKQYELVLALCKQMESKGIAHSIYTLSIMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVI 160
Query: 363 YDVLLDGLFKDGRMEEAVRIFDYMKELKVVSS-SSFVIVVSRLCHLKELRKAMKNHDEML 421
++ LL+GL + R+ EA+ + D M E+ + + +V+ LC ++ A+ D M+
Sbjct: 161 FNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMV 220
Query: 422 KMGHKPDEATYKQVIS 437
+ G +P+E TY V++
Sbjct: 221 ETGFQPNEVTYGPVLN 236
>sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130,
mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2
SV=1
Length = 630
Score = 130 bits (326), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 99/430 (23%), Positives = 194/430 (45%), Gaps = 9/430 (2%)
Query: 16 SLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVR 75
S++++C+ + L V M G+ P + N+LL+ N I A L G MV
Sbjct: 120 SILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVE 179
Query: 76 DGVSPNKFTWSLVAQILCRSGKFEVVLGLLDSGIYSS-----VMYNLVIDFYSKKGDFGA 130
G P+ FT++ + L R + + L+D + V Y +V++ K+GD
Sbjct: 180 MGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDL 239
Query: 131 AFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDY 190
A L +M G+ + PG Y++I+D Y+ + + M K + P + +
Sbjct: 240 ALSLLKKMEQGK-IEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPN--VVTYNS 296
Query: 191 VIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERG 250
+I+ L + G+ A + + KI T ++ A KEG++ EA ++Y + +R
Sbjct: 297 LIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRS 356
Query: 251 ITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVE 310
I Y + +N C + +E + ++ + P + + + C + E
Sbjct: 357 IDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGM 416
Query: 311 ELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGL 370
EL + +GL+ ++ ++L+ + R+ D A + ++ D+ TY +LLDGL
Sbjct: 417 ELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGL 476
Query: 371 FKDGRMEEAVRIFDYMKELKVVSS-SSFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDE 429
+G++E A+ +F+Y++ K+ ++ I++ +C ++ + G KP+
Sbjct: 477 CNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNV 536
Query: 430 ATYKQVISGF 439
TY ++SGF
Sbjct: 537 VTYTTMMSGF 546
Score = 117 bits (294), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 99/435 (22%), Positives = 191/435 (43%), Gaps = 21/435 (4%)
Query: 14 ALSLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAM 73
L+ +L+ + H D + + M G+ P N L+ L+R N A L M
Sbjct: 153 TLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRM 212
Query: 74 VRDGVSPNKFTWSLVAQILCRSGKFEVVLGLL--------DSGIYSSVMYNLVIDFYSKK 125
V G P+ T+ +V LC+ G ++ L LL + G+ V+YN +ID
Sbjct: 213 VVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGV---VIYNTIIDALCNY 269
Query: 126 GDFGAAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFL 185
+ A + EM N + + P TY+S++ Y + + R++ M+E+K+ P +
Sbjct: 270 KNVNDALNLFTEMDN-KGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPN--V 326
Query: 186 SGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHL 245
+I GK AE ++ I+ T ++ R+ EA ++ L
Sbjct: 327 VTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFEL 386
Query: 246 ISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGK 305
+ + Y + CK + +E L R++ +RG + + + + +
Sbjct: 387 MISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARE 446
Query: 306 WKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDV 365
+ + ++ G+L D S L++ C+N +++ A+ + +++ K D+ TY++
Sbjct: 447 CDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNI 506
Query: 366 LLDGLFKDGRMEEAVRIFDYMKELKVVSSS--SFVIVVSRLCH--LKELRKAMKNHDEML 421
+++G+ K G++E+ +F + LK V + ++ ++S C LKE A+ EM
Sbjct: 507 MIEGMCKAGKVEDGWDLFCSL-SLKGVKPNVVTYTTMMSGFCRKGLKEEADAL--FREMK 563
Query: 422 KMGHKPDEATYKQVI 436
+ G PD TY +I
Sbjct: 564 EEGPLPDSGTYNTLI 578
Score = 98.6 bits (244), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 89/401 (22%), Positives = 173/401 (43%), Gaps = 9/401 (2%)
Query: 45 PAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSGKFEVVLGL 104
P++ + LL A+ + N+ L L M G+S N +T+S++ CR + + L +
Sbjct: 79 PSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSILINCFCRRSQLSLALAV 138
Query: 105 LDSGI---YSS--VMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDGAR 159
L + Y V N +++ + A + +M P T+++++ G
Sbjct: 139 LAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVE-MGYQPDSFTFNTLIHGLF 197
Query: 160 RYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQ 219
R+ + + +V MV K P G V+ L G A + K+ KIE
Sbjct: 198 RHNRASEAVALVDRMVVKGCQPDLVTYG--IVVNGLCKRGDIDLALSLLKKMEQGKIEPG 255
Query: 220 DDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLR 279
++ AL V +A+ ++ + +GI Y + + LC + + LL
Sbjct: 256 VVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLS 315
Query: 280 DVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNR 339
D++ER P + S + + +GK E E+L ++ + + D F SSL+ +C +
Sbjct: 316 DMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHD 375
Query: 340 QIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSS-SFV 398
++D+A + + +V TY+ L+ G K R++E + +F M + +V ++ ++
Sbjct: 376 RLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYT 435
Query: 399 IVVSRLCHLKELRKAMKNHDEMLKMGHKPDEATYKQVISGF 439
++ +E A +M+ G PD TY ++ G
Sbjct: 436 TLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGL 476
Score = 86.7 bits (213), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 86/397 (21%), Positives = 173/397 (43%), Gaps = 21/397 (5%)
Query: 56 ALYRQNEIRL--ASCLYGAMVRDGVSPNKFTWSLVAQILCRSGKFEVVLGLLDS----GI 109
++ R N+++L A L+G MV+ P+ +S + + + KF++V+ L + GI
Sbjct: 53 SINRLNDLKLDDAVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGI 112
Query: 110 YSSV-MYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSD 168
++ Y+++I+ + ++ A L +M P T +S+L+G + +
Sbjct: 113 SHNLYTYSILINCFCRRSQLSLALAVLAKMMK-LGYEPDIVTLNSLLNGFCHGNRISDAV 171
Query: 169 RIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLK 228
+VG MVE P F + +I L + A + R + + T G ++
Sbjct: 172 SLVGQMVEMGYQPDSFTF--NTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVN 229
Query: 229 ALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIP 288
L K G + A+ + + + I Y ++ LC + L ++ +G P
Sbjct: 230 GLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRP 289
Query: 289 CAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALH 348
+ + + C G+W + LLS ++++ + + S+L++ + ++ +A L+
Sbjct: 290 NVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLY 349
Query: 349 IKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSR----- 403
++ K D+ TY L++G R++EA +F+ M +S F VV+
Sbjct: 350 DEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELM-----ISKDCFPNVVTYNTLIK 404
Query: 404 -LCHLKELRKAMKNHDEMLKMGHKPDEATYKQVISGF 439
C K + + M+ EM + G + TY +I GF
Sbjct: 405 GFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGF 441
>sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700,
chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1
Length = 754
Score = 128 bits (322), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 97/408 (23%), Positives = 182/408 (44%), Gaps = 43/408 (10%)
Query: 38 MRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSGK 97
M V+G P VS N L+ AL R +++R A + M G+ P++ T++ V Q G
Sbjct: 180 MSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGD 239
Query: 98 FEVVLGLLDSGI-----YSSVMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFSTYS 152
+ L + + + +S+V N+++ + K+G A + + EM N P T++
Sbjct: 240 LDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFN 299
Query: 153 SILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRAC 212
++++G + + + I+ +M+++ P +
Sbjct: 300 TLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVY---------------------------- 331
Query: 213 DEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPE 272
T ++ L K G VKEA+++ + R + Y ++ LCKE+Q E
Sbjct: 332 ---------TYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVE 382
Query: 273 EVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLM 332
E L R + +G +P + + C + EL + KG D F + L+
Sbjct: 383 EATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLI 442
Query: 333 EYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVV 392
+ CS ++D+A+ + ++E + V TY+ L+DG K + EA IFD M+ V
Sbjct: 443 DSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVS 502
Query: 393 SSS-SFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDEATYKQVISGF 439
+S ++ ++ LC + + A + D+M+ G KPD+ TY +++ F
Sbjct: 503 RNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHF 550
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 91/436 (20%), Positives = 185/436 (42%), Gaps = 12/436 (2%)
Query: 14 ALSLVLDCYSHKGLFMDGLE-VYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGA 72
++++++ + +G D L + M GF P N L++ L + ++ A +
Sbjct: 261 SVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDV 320
Query: 73 MVRDGVSPNKFTWSLVAQILCRSGKFEVVLGLLDSGIY-----SSVMYNLVIDFYSKKGD 127
M+++G P+ +T++ V LC+ G+ + + +LD I ++V YN +I K+
Sbjct: 321 MLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQ 380
Query: 128 FGAAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSG 187
A + L + + + P T++S++ G V+ + M K P F
Sbjct: 381 VEEATE-LARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTY- 438
Query: 188 NDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLIS 247
+ +I L GK A + K+ T ++ K + +EA +I+ +
Sbjct: 439 -NMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEME 497
Query: 248 ERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWK 307
G++ Y ++ LCK + E+ L+ ++ G P + + C G K
Sbjct: 498 VHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIK 557
Query: 308 EVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLL 367
+ +++ A+ G D +L+ C +++ A L I+ +L Y+ ++
Sbjct: 558 KAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAYNPVI 617
Query: 368 DGLFKDGRMEEAVRIFDYMKELKVVSSS--SFVIVVSRLCH-LKELRKAMKNHDEMLKMG 424
GLF+ + EA+ +F M E S+ IV LC+ +R+A+ E+L+ G
Sbjct: 618 QGLFRKRKTTEAINLFREMLEQNEAPPDAVSYRIVFRGLCNGGGPIREAVDFLVELLEKG 677
Query: 425 HKPDEATYKQVISGFM 440
P+ ++ + G +
Sbjct: 678 FVPEFSSLYMLAEGLL 693
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 82/368 (22%), Positives = 146/368 (39%), Gaps = 63/368 (17%)
Query: 6 EGRDSQSDALSLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEI-- 63
EG D + V+ G + +EV M P N L+ L ++N++
Sbjct: 324 EGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEE 383
Query: 64 ---------------------------------RLASCLYGAMVRDGVSPNKFTWSLVAQ 90
R+A L+ M G P++FT++++
Sbjct: 384 ATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLID 443
Query: 91 ILCRSGKFEVVLGLLD----SGIYSSVM-YNLVIDFYSKKGDFGAAFDRLNEMCNGRNLT 145
LC GK + L +L SG SV+ YN +ID + K A + +EM ++
Sbjct: 444 SLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEM-EVHGVS 502
Query: 146 PGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLP---------KHFLSGNDYVIQKLS 196
TY++++DG + + E + +++ M+ + P HF G D I+K +
Sbjct: 503 RNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGD--IKKAA 560
Query: 197 DMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDS 256
D+ + + C+ I T G ++ L K GRV+ A ++ I +GI +
Sbjct: 561 DI-----VQAMTSNGCEPDIV----TYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPH 611
Query: 257 DYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQC--GKGKWKEVEELLS 314
Y + L ++ + E L R+++E+ P R V G G +E + L
Sbjct: 612 AYNPVIQGLFRKRKTTEAINLFREMLEQNEAPPDAVSYRIVFRGLCNGGGPIREAVDFLV 671
Query: 315 AVLDKGLL 322
+L+KG +
Sbjct: 672 ELLEKGFV 679
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/280 (22%), Positives = 119/280 (42%), Gaps = 16/280 (5%)
Query: 16 SLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVR 75
++++D KG + L + + M + G +V N L+D + N+ R A ++ M
Sbjct: 439 NMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEV 498
Query: 76 DGVSPNKFTWSLVAQILCRSGKFEVVLGLLDSGIYSS-----VMYNLVIDFYSKKGDFGA 130
GVS N T++ + LC+S + E L+D I YN ++ + + GD
Sbjct: 499 HGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKK 558
Query: 131 AFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEK--KLLPKHFLSGN 188
A D + M + P TY +++ G + + EV+ +++ + K L P +
Sbjct: 559 AADIVQAMTSN-GCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAY---- 613
Query: 189 DYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCG--CMLKAL-SKEGRVKEAIQIYHL 245
+ VIQ L KT A +F+ ++ E D + + L + G ++EA+
Sbjct: 614 NPVIQGLFRKRKTTEAINLFREMLEQN-EAPPDAVSYRIVFRGLCNGGGPIREAVDFLVE 672
Query: 246 ISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERG 285
+ E+G S Y L E + L+ V+++
Sbjct: 673 LLEKGFVPEFSSLYMLAEGLLTLSMEETLVKLVNMVMQKA 712
Score = 35.4 bits (80), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 27/46 (58%)
Query: 395 SSFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDEATYKQVISGFM 440
S+F +++ LC +LR A+ ++M G PDE T+ V+ G++
Sbjct: 190 STFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYI 235
>sp|Q9ZVX5|PP156_ARATH Pentatricopeptide repeat-containing protein At2g16880
OS=Arabidopsis thaliana GN=At2g16880 PE=2 SV=1
Length = 743
Score = 125 bits (314), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 109/441 (24%), Positives = 205/441 (46%), Gaps = 28/441 (6%)
Query: 17 LVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNE---IRLASCLYGAM 73
+ L Y H+G L++++ M P + CN LL L R I A ++ M
Sbjct: 136 IALSAYLHEGKPHVALQIFQKMIRLKLKPNLLTCNTLLIGLVRYPSSFSISSAREVFDDM 195
Query: 74 VRDGVSPNKFTWSLVAQILCRSGKFEVVLGLLDSGIYS------SVMYNLVIDFYSKKGD 127
V+ GVS N T++++ C GK E LG+L+ + +V YN ++ SKKG
Sbjct: 196 VKIGVSLNVQTFNVLVNGYCLEGKLEDALGMLERMVSEFKVNPDNVTYNTILKAMSKKGR 255
Query: 128 FGAAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSG 187
+ L +M L P TY++++ G + + + +IV LM + +LP L
Sbjct: 256 LSDLKELLLDM-KKNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELMKQTNVLPD--LCT 312
Query: 188 NDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTC-------GCMLKALSKEGRVKEAI 240
+ +I L + G + + ++LQ D GC LS E R
Sbjct: 313 YNILINGLCNAGSMREGLELMDAM--KSLKLQPDVVTYNTLIDGCFELGLSLEAR----- 365
Query: 241 QIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVE-RGYIPCAMELSRFVAS 299
++ + G+ + + LCKE + E V ++++V+ G+ P + + +
Sbjct: 366 KLMEQMENDGVKANQVTHNISLKWLCKEEKREAVTRKVKELVDMHGFSPDIVTYHTLIKA 425
Query: 300 QCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLD 359
G E++ + KG+ +++ +++++ C R++D+A L K +D
Sbjct: 426 YLKVGDLSGALEMMREMGQKGIKMNTITLNTILDALCKERKLDEAHNLLNSAHKRGFIVD 485
Query: 360 VATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSS-SSFVIVVSRLCHLKELRKAMKNHD 418
TY L+ G F++ ++E+A+ ++D MK++K+ + S+F ++ LCH + AM+ D
Sbjct: 486 EVTYGTLIMGFFREEKVEKALEMWDEMKKVKITPTVSTFNSLIGGLCHHGKTELAMEKFD 545
Query: 419 EMLKMGHKPDEATYKQVISGF 439
E+ + G PD++T+ +I G+
Sbjct: 546 ELAESGLLPDDSTFNSIILGY 566
Score = 98.6 bits (244), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 100/467 (21%), Positives = 200/467 (42%), Gaps = 41/467 (8%)
Query: 14 ALSLVLDCYSHKGLFMDGLEVY-RMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGA 72
+++++ Y +G D L + RM+ + P N +L A+ ++ + L
Sbjct: 206 TFNVLVNGYCLEGKLEDALGMLERMVSEFKVNPDNVTYNTILKAMSKKGRLSDLKELLLD 265
Query: 73 MVRDGVSPNKFTWSLVAQILCRSGK----FEVVLGLLDSGIYSSV-MYNLVIDFYSKKGD 127
M ++G+ PN+ T++ + C+ G F++V + + + + YN++I+ G
Sbjct: 266 MKKNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELMKQTNVLPDLCTYNILINGLCNAGS 325
Query: 128 FGAAFDRLNEMCNGRNLTPGFSTYSSILDG---------ARRYEKTEVSDRIVGLMVE-- 176
+ ++ M L P TY++++DG AR+ + +D + V
Sbjct: 326 MREGLELMDAM-KSLKLQPDVVTYNTLIDGCFELGLSLEARKLMEQMENDGVKANQVTHN 384
Query: 177 -------------------KKLLPKHFLSGN----DYVIQKLSDMGKTYAAEMIFKRACD 213
K+L+ H S + +I+ +G A + +
Sbjct: 385 ISLKWLCKEEKREAVTRKVKELVDMHGFSPDIVTYHTLIKAYLKVGDLSGALEMMREMGQ 444
Query: 214 EKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEE 273
+ I++ T +L AL KE ++ EA + + +RG V + Y + +E + E+
Sbjct: 445 KGIKMNTITLNTILDALCKERKLDEAHNLLNSAHKRGFIVDEVTYGTLIMGFFREEKVEK 504
Query: 274 VCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLME 333
+ ++ + P + + C GK + E + + GLL D +S++
Sbjct: 505 ALEMWDEMKKVKITPTVSTFNSLIGGLCHHGKTELAMEKFDELAESGLLPDDSTFNSIIL 564
Query: 334 YYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVS 393
YC +++KA + + K D T ++LL+GL K+G E+A+ F+ + E + V
Sbjct: 565 GYCKEGRVEKAFEFYNESIKHSFKPDNYTCNILLNGLCKEGMTEKALNFFNTLIEEREVD 624
Query: 394 SSSFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDEATYKQVISGFM 440
+ ++ ++S C K+L++A EM + G +PD TY IS M
Sbjct: 625 TVTYNTMISAFCKDKKLKEAYDLLSEMEEKGLEPDRFTYNSFISLLM 671
Score = 82.8 bits (203), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 70/287 (24%), Positives = 130/287 (45%), Gaps = 11/287 (3%)
Query: 33 EVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQIL 92
+V ++ ++GF P + + L+ A + ++ A + M + G+ N T + + L
Sbjct: 402 KVKELVDMHGFSPDIVTYHTLIKAYLKVGDLSGALEMMREMGQKGIKMNTITLNTILDAL 461
Query: 93 CRSGKFEVVLGLLDSG-----IYSSVMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPG 147
C+ K + LL+S I V Y +I + ++ A + +EM + +TP
Sbjct: 462 CKERKLDEAHNLLNSAHKRGFIVDEVTYGTLIMGFFREEKVEKALEMWDEMKKVK-ITPT 520
Query: 148 FSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMI 207
ST++S++ G + KTE++ + E LLP S + +I G+ A
Sbjct: 521 VSTFNSLIGGLCHHGKTELAMEKFDELAESGLLPDD--STFNSIILGYCKEGRVEKAFEF 578
Query: 208 FKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYH-LISERGITVRDSDYYAFVNVLC 266
+ + + + TC +L L KEG ++A+ ++ LI ER V Y ++ C
Sbjct: 579 YNESIKHSFKPDNYTCNILLNGLCKEGMTEKALNFFNTLIEER--EVDTVTYNTMISAFC 636
Query: 267 KEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELL 313
K+ + +E LL ++ E+G P + F++ GK E +ELL
Sbjct: 637 KDKKLKEAYDLLSEMEEKGLEPDRFTYNSFISLLMEDGKLSETDELL 683
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/283 (21%), Positives = 127/283 (44%), Gaps = 6/283 (2%)
Query: 163 KTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQ--KLSDMGKTYAAEMIFKRACDEKIELQD 220
K V+ +I M+ KL P + L+ N +I + +A +F + L
Sbjct: 146 KPHVALQIFQKMIRLKLKP-NLLTCNTLLIGLVRYPSSFSISSAREVFDDMVKIGVSLNV 204
Query: 221 DTCGCMLKALSKEGRVKEAI-QIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLR 279
T ++ EG++++A+ + ++SE + + Y + + K+ + ++ LL
Sbjct: 205 QTFNVLVNGYCLEGKLEDALGMLERMVSEFKVNPDNVTYNTILKAMSKKGRLSDLKELLL 264
Query: 280 DVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNR 339
D+ + G +P + + V C G KE +++ + +L D + L+ C+
Sbjct: 265 DMKKNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELMKQTNVLPDLCTYNILINGLCNAG 324
Query: 340 QIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSS-SFV 398
+ + + L ++ LK DV TY+ L+DG F+ G EA ++ + M+ V ++ +
Sbjct: 325 SMREGLELMDAMKSLKLQPDVVTYNTLIDGCFELGLSLEARKLMEQMENDGVKANQVTHN 384
Query: 399 IVVSRLCHLKELRKAMKNHDEMLKM-GHKPDEATYKQVISGFM 440
I + LC ++ + E++ M G PD TY +I ++
Sbjct: 385 ISLKWLCKEEKREAVTRKVKELVDMHGFSPDIVTYHTLIKAYL 427
>sp|Q9ZQF1|PP152_ARATH Pentatricopeptide repeat-containing protein At2g15630,
mitochondrial OS=Arabidopsis thaliana GN=At2g15630 PE=3
SV=1
Length = 627
Score = 124 bits (312), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 103/429 (24%), Positives = 189/429 (44%), Gaps = 12/429 (2%)
Query: 17 LVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRD 76
L++ C + + +E + +M+ GF P CN +L L R N I A Y M R
Sbjct: 160 LLVRCCCQLRMVDEAIECFYLMKEKGFYPKTETCNHILTLLSRLNRIENAWVFYADMYRM 219
Query: 77 GVSPNKFTWSLVAQILCRSGKFEVVLGLLDS----GIYSS-VMYNLVIDFYSKKGDFGAA 131
+ N +T++++ +LC+ GK + G L GI + V YN ++ +S +G A
Sbjct: 220 EIKSNVYTFNIMINVLCKEGKLKKAKGFLGIMEVFGIKPTIVTYNTLVQGFSLRGRIEGA 279
Query: 132 FDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYV 191
++EM + P TY+ IL + + ++ M E L+P + +
Sbjct: 280 RLIISEM-KSKGFQPDMQTYNPILSWMCNEGR---ASEVLREMKEIGLVPDSV--SYNIL 333
Query: 192 IQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGI 251
I+ S+ G A + + T ++ L E +++ A + I E+GI
Sbjct: 334 IRGCSNNGDLEMAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIREKGI 393
Query: 252 TVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEE 311
+ Y +N C+ ++ L +++ G P + + C K K +E +E
Sbjct: 394 VLDSVTYNILINGYCQHGDAKKAFALHDEMMTDGIQPTQFTYTSLIYVLCRKNKTREADE 453
Query: 312 LLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLF 371
L V+ KG+ D ++LM+ +C+ +D+A +L +++ + + D TY+ L+ GL
Sbjct: 454 LFEKVVGKGMKPDLVMMNTLMDGHCAIGNMDRAFSLLKEMDMMSINPDDVTYNCLMRGLC 513
Query: 372 KDGRMEEAVRIFDYMKELKVVSSS-SFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDEA 430
+G+ EEA + MK + S+ ++S + + A DEML +G P
Sbjct: 514 GEGKFEEARELMGEMKRRGIKPDHISYNTLISGYSKKGDTKHAFMVRDEMLSLGFNPTLL 573
Query: 431 TYKQVISGF 439
TY ++ G
Sbjct: 574 TYNALLKGL 582
Score = 34.3 bits (77), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 26/60 (43%)
Query: 22 YSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPN 81
YS KG V M GF P + NALL L + E LA L M +G+ PN
Sbjct: 547 YSKKGDTKHAFMVRDEMLSLGFNPTLLTYNALLKGLSKNQEGELAEELLREMKSEGIVPN 606
>sp|Q9SH60|PP103_ARATH Pentatricopeptide repeat-containing protein At1g64100
OS=Arabidopsis thaliana GN=At1g64100 PE=2 SV=2
Length = 666
Score = 122 bits (306), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 101/440 (22%), Positives = 202/440 (45%), Gaps = 23/440 (5%)
Query: 9 DSQSDALSLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASC 68
D S+AL+L Y + F++ + ++ M G P V N L++ L + + A+
Sbjct: 190 DRISEALALF--GYMVETGFLEAVALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAA 247
Query: 69 LYGAMVRDGVSPNKFTWSLVAQILCRSGKFEVVLGLL----DSGIYSSV-MYNLVIDFYS 123
L MV G+ + T+ + +C+ G + L LL ++ I V +Y+ +ID
Sbjct: 248 LVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLC 307
Query: 124 KKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKH 183
K G A +EM + + P TY+ ++DG + + + R++ M+E+++ P
Sbjct: 308 KDGHHSDAQYLFSEMLE-KGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPD- 365
Query: 184 FLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIE--LQDDTC--GCMLKALSKEGRVKEA 239
L+ N + + + GK + AE + CDE + + DT M+ K R +A
Sbjct: 366 VLTFNALISASVKE-GKLFEAE----KLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDA 420
Query: 240 IQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVAS 299
++ L++ + + ++V C+ + +E LLR++ RG + + +
Sbjct: 421 KHMFDLMASPDVVT----FNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHG 476
Query: 300 QCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLD 359
C ++L ++ G+ D+ C+ L+ +C N ++++A+ L I+ K LD
Sbjct: 477 FCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLD 536
Query: 360 VATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSS-SSFVIVVSRLCHLKELRKAMKNHD 418
Y++++ G+ K +++EA +F + V ++ +++S C + A
Sbjct: 537 TVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFH 596
Query: 419 EMLKMGHKPDEATYKQVISG 438
+M GH+PD +TY +I G
Sbjct: 597 KMKDNGHEPDNSTYNTLIRG 616
Score = 86.3 bits (212), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 88/427 (20%), Positives = 183/427 (42%), Gaps = 35/427 (8%)
Query: 37 MMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSG 96
M+R F AV CN ++ R N +A LY M + N ++++++ + C
Sbjct: 97 MVRSRPFYTAVD-CNKVIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSFNILIKCFCDCH 155
Query: 97 KFEVVLGLL----------DSGIYSSVMYNLVID--FYSKKGDFG-----------AAFD 133
K L D ++++++ L ++ FG A FD
Sbjct: 156 KLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETGFLEAVALFD 215
Query: 134 RLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQ 193
++ E+ LTP T++++++G + + +V MV K L G ++
Sbjct: 216 QMVEI----GLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGT--IVN 269
Query: 194 KLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITV 253
+ MG T +A + + + I+ ++ L K+G +A ++ + E+GI
Sbjct: 270 GMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAP 329
Query: 254 RDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELL 313
Y ++ C + + LLRD++ER P + + +++ +GK E E+L
Sbjct: 330 NVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLC 389
Query: 314 SAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKD 373
+L + + D+ +S++ +C + + D A + L S DV T++ ++D +
Sbjct: 390 DEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMF----DLMASPDVVTFNTIIDVYCRA 445
Query: 374 GRMEEAVRIF-DYMKELKVVSSSSFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDEATY 432
R++E +++ + + V +++++ ++ C + L A EM+ G PD T
Sbjct: 446 KRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITC 505
Query: 433 KQVISGF 439
++ GF
Sbjct: 506 NILLYGF 512
Score = 66.6 bits (161), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 74/369 (20%), Positives = 150/369 (40%), Gaps = 36/369 (9%)
Query: 45 PAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSGKFEVVLGL 104
P V +A++D L + A L+ M+ G++PN FT++ + C G++ L
Sbjct: 294 PDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRL 353
Query: 105 LDSGIYSSV-----MYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDGAR 159
L I + +N +I K+G A +EM + R + P TY+S++ G
Sbjct: 354 LRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLH-RCIFPDTVTYNSMIYGFC 412
Query: 160 RYEKTEVSDRIVGLMVEKKL-------------------------LPKHFLSGN----DY 190
++ + + + + LM + + + L N +
Sbjct: 413 KHNRFDDAKHMFDLMASPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNT 472
Query: 191 VIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERG 250
+I ++ AA+ +F+ + TC +L + +++EA++++ +I
Sbjct: 473 LIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSK 532
Query: 251 ITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVE 310
I + Y ++ +CK + +E L + G P + ++ CGK +
Sbjct: 533 IDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDAN 592
Query: 311 ELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGL 370
L + D G D+ ++L+ +IDK+I L ++ S D T ++ D L
Sbjct: 593 VLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNGFSGDAFTIKMVAD-L 651
Query: 371 FKDGRMEEA 379
DGR++++
Sbjct: 652 ITDGRLDKS 660
>sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710
OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1
Length = 747
Score = 122 bits (305), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 100/432 (23%), Positives = 185/432 (42%), Gaps = 35/432 (8%)
Query: 10 SQSDALSLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYR-QNEIRLASC 68
S S LV+ YS L L + + + +GF+P V + NA+LDA R + I A
Sbjct: 132 STSSVFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAEN 191
Query: 69 LYGAMVRDGVSPNKFTWSLVAQILCRSGKFEVVLGLLDSGIYSSVMYNLVIDFYSKKGDF 128
++ M+ VSPN FT++++ + C +G +V L L
Sbjct: 192 VFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTL------------------------ 227
Query: 129 GAAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGN 188
FD++ + P TY++++DG + K + +++ M K L P L
Sbjct: 228 ---FDKMET----KGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPN--LISY 278
Query: 189 DYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISE 248
+ VI L G+ + L + T ++K KEG +A+ ++ +
Sbjct: 279 NVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLR 338
Query: 249 RGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKE 308
G+T Y + ++ +CK L + RG P + V KG E
Sbjct: 339 HGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNE 398
Query: 309 VEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLD 368
+L + D G ++L+ +C +++ AIA+ +++ S DV +Y +L
Sbjct: 399 AYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLS 458
Query: 369 GLFKDGRMEEAVRIFDYMKELKVVSSS-SFVIVVSRLCHLKELRKAMKNHDEMLKMGHKP 427
G + ++EA+R+ M E + + ++ ++ C + ++A ++EML++G P
Sbjct: 459 GFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPP 518
Query: 428 DEATYKQVISGF 439
DE TY +I+ +
Sbjct: 519 DEFTYTALINAY 530
Score = 122 bits (305), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 111/430 (25%), Positives = 188/430 (43%), Gaps = 26/430 (6%)
Query: 31 GLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQ 90
L ++ M G +P V N L+D + +I L +M G+ PN ++++V
Sbjct: 224 ALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVIN 283
Query: 91 ILCRSGKFE---VVLGLLDSGIYS--SVMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLT 145
LCR G+ + VL ++ YS V YN +I Y K+G+F A EM LT
Sbjct: 284 GLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLR-HGLT 342
Query: 146 PGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAE 205
P TY+S++ + + + M + L P ++ S G A
Sbjct: 343 PSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNE--RTYTTLVDGFSQKGYMNEAY 400
Query: 206 MIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVL 265
+ + D T ++ G++++AI + + E+G++ Y ++
Sbjct: 401 RVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGF 460
Query: 266 CKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDS 325
C+ + +E + R++VE+G P + S + C + + KE +L +L GL D
Sbjct: 461 CRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDE 520
Query: 326 FCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSL-DVATYDVLLDGLFKDGRMEEAVRIF- 383
F ++L+ YC ++KA+ LH ++ + KG L DV TY VL++GL K R EA R+
Sbjct: 521 FTYTALINAYCMEGDLEKALQLHNEMVE-KGVLPDVVTYSVLINGLNKQSRTREAKRLLL 579
Query: 384 ------------DYMKELKVVSSSSFVIVVSRL---CHLKELRKAMKNHDEMLKMGHKPD 428
Y ++ S+ F VVS + C + +A + + ML HKPD
Sbjct: 580 KLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHKPD 639
Query: 429 EATYKQVISG 438
Y +I G
Sbjct: 640 GTAYNIMIHG 649
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 73/360 (20%), Positives = 139/360 (38%), Gaps = 54/360 (15%)
Query: 16 SLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVR 75
+ ++D +S KG + V R M GF P+V NAL++ ++ A + M
Sbjct: 384 TTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKE 443
Query: 76 DGVSPNKFTWSLVAQILCRSGKFEVVL----GLLDSGI------YSSVM----------- 114
G+SP+ ++S V CRS + L +++ GI YSS++
Sbjct: 444 KGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKE 503
Query: 115 -------------------YNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSIL 155
Y +I+ Y +GD A NEM + + P TYS ++
Sbjct: 504 ACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVE-KGVLPDVVTYSVLI 562
Query: 156 DGARRYEKTEVSDRIVGLMVEKKLLPK----HFLSGN---------DYVIQKLSDMGKTY 202
+G + +T + R++ + ++ +P H L N +I+ G
Sbjct: 563 NGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMT 622
Query: 203 AAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFV 262
A+ +F+ + + M+ + G +++A +Y + + G + A V
Sbjct: 623 EADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIALV 682
Query: 263 NVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLL 322
L KE + E+ ++ V+ + A + V +G V ++L+ + G L
Sbjct: 683 KALHKEGKVNELNSVIVHVLRSCELSEAEQAKVLVEINHREGNMDVVLDVLAEMAKDGFL 742
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 65/282 (23%), Positives = 118/282 (41%), Gaps = 29/282 (10%)
Query: 30 DGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVA 89
+ L V R M G P ++L+ Q + A LY M+R G+ P++FT++ +
Sbjct: 468 EALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALI 527
Query: 90 QILCRSGKFEVVLGL----LDSGIYSSVM-YNLVIDFYSKKGDFGAAFDRLNEMCNGRNL 144
C G E L L ++ G+ V+ Y+++I+ +K+ A L ++ ++
Sbjct: 528 NAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESV 587
Query: 145 TPGFSTYSSILDGARRYEKTEVSDRIVGL-----------MVEKKLLPKHFLSGNDYVIQ 193
P TY ++++ E V I G + E L H G Y I
Sbjct: 588 -PSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIM 646
Query: 194 -----KLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQ-IYHLIS 247
+ D+ K Y ++K L T ++KAL KEG+V E I H++
Sbjct: 647 IHGHCRAGDIRKAYT---LYKEMVKSGFLLHTVTVIALVKALHKEGKVNELNSVIVHVL- 702
Query: 248 ERGITVRDSDYY-AFVNVLCKEHQPEEVCGLLRDVVERGYIP 288
R + +++ V + +E + V +L ++ + G++P
Sbjct: 703 -RSCELSEAEQAKVLVEINHREGNMDVVLDVLAEMAKDGFLP 743
>sp|Q9LVQ5|PP432_ARATH Pentatricopeptide repeat-containing protein At5g55840
OS=Arabidopsis thaliana GN=At5g55840 PE=2 SV=2
Length = 1096
Score = 120 bits (302), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 98/437 (22%), Positives = 197/437 (45%), Gaps = 9/437 (2%)
Query: 9 DSQSDALSLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASC 68
+S +++ Y +G+ D LE++R+M +YGF P+V CNA+L ++ + E
Sbjct: 120 NSNPSVYDILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDVSVWS 179
Query: 69 LYGAMVRDGVSPNKFTWSLVAQILCRSGKFEVVLGLLD----SGIYSS-VMYNLVIDFYS 123
M++ + P+ T++++ +LC G FE L+ SG + V YN V+ +Y
Sbjct: 180 FLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYC 239
Query: 124 KKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKH 183
KKG F AA + L+ M + + TY+ ++ R + ++ M ++ + P
Sbjct: 240 KKGRFKAAIELLDHM-KSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNE 298
Query: 184 FLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIY 243
+ +I S+ GK A + + T ++ EG KEA++++
Sbjct: 299 VTY--NTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMF 356
Query: 244 HLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGK 303
+++ +G+T + Y ++ LCK + + G + G + + + C
Sbjct: 357 YMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKN 416
Query: 304 GKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATY 363
G E LL+ + G+ D S+L+ +C + A + +I ++ S + Y
Sbjct: 417 GFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIY 476
Query: 364 DVLLDGLFKDGRMEEAVRIFDYM-KELKVVSSSSFVIVVSRLCHLKELRKAMKNHDEMLK 422
L+ + G ++EA+RI++ M E +F ++V+ LC ++ +A + M
Sbjct: 477 STLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTS 536
Query: 423 MGHKPDEATYKQVISGF 439
G P+ ++ +I+G+
Sbjct: 537 DGILPNTVSFDCLINGY 553
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 91/411 (22%), Positives = 161/411 (39%), Gaps = 75/411 (18%)
Query: 51 NALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSGKFEVVL-------- 102
N LL A+ + + A L+G MV+ + P+ +T++ + LCR GK + +
Sbjct: 617 NTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGKTVIAILFAKEAEA 676
Query: 103 ----------------GLLDSGIYSSVMY-----------------NLVIDFYSKKGDFG 129
G+ +G + + +Y N +ID YS+ G
Sbjct: 677 RGNVLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDNLGHTPDIVTTNAMIDGYSRMGKIE 736
Query: 130 AAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLP-------- 181
D L EM N +N P +TY+ +L G + + S + ++ +LP
Sbjct: 737 KTNDLLPEMGN-QNGGPNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTCHSL 795
Query: 182 -----------------KHFLSGN--------DYVIQKLSDMGKTYAAEMIFKRACDEKI 216
K F+ + +I K G+ A + K I
Sbjct: 796 VLGICESNMLEIGLKILKAFICRGVEVDRYTFNMLISKCCANGEINWAFDLVKVMTSLGI 855
Query: 217 ELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCG 276
L DTC M+ L++ R +E+ + H +S++GI+ Y +N LC+ +
Sbjct: 856 SLDKDTCDAMVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLINGLCRVGDIKTAFV 915
Query: 277 LLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYC 336
+ +++ P + S V + GK E LL +L L+ ++LM C
Sbjct: 916 VKEEMIAHKICPPNVAESAMVRALAKCGKADEATLLLRFMLKMKLVPTIASFTTLMHLCC 975
Query: 337 SNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMK 387
N + +A+ L + + LD+ +Y+VL+ GL G M A +++ MK
Sbjct: 976 KNGNVIEALELRVVMSNCGLKLDLVSYNVLITGLCAKGDMALAFELYEEMK 1026
Score = 85.9 bits (211), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 85/430 (19%), Positives = 183/430 (42%), Gaps = 12/430 (2%)
Query: 18 VLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDG 77
+++ +S++G + ++ M +G P NAL+D + + A ++ M G
Sbjct: 304 LINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKG 363
Query: 78 VSPNKFTWSLVAQILCRSGKFEVVLGLL----DSGI-YSSVMYNLVIDFYSKKGDFGAAF 132
++P++ ++ ++ LC++ +F++ G +G+ + Y +ID K G A
Sbjct: 364 LTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAV 423
Query: 133 DRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVI 192
LNEM + + P TYS++++G + + + + IV + L P + +I
Sbjct: 424 VLLNEM-SKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYST--LI 480
Query: 193 QKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGIT 252
MG A I++ E T ++ +L K G+V EA + ++ GI
Sbjct: 481 YNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGIL 540
Query: 253 VRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEEL 312
+ +N + + + ++ + G+ P + C G +E E+
Sbjct: 541 PNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKF 600
Query: 313 LSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFK 372
L ++ +D+ ++L+ C + + KA++L ++ + D TY L+ GL +
Sbjct: 601 LKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCR 660
Query: 373 DGRMEEAVRIFDYMKELK---VVSSSSFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDE 429
G+ A+ +F E + + + + V + + + + ++M +GH PD
Sbjct: 661 KGKTVIAI-LFAKEAEARGNVLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDNLGHTPDI 719
Query: 430 ATYKQVISGF 439
T +I G+
Sbjct: 720 VTTNAMIDGY 729
Score = 76.6 bits (187), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 88/434 (20%), Positives = 174/434 (40%), Gaps = 24/434 (5%)
Query: 6 EGRDSQSDALSLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRL 65
EG ++++ G + E R M G +P + + L++ E
Sbjct: 502 EGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLK 561
Query: 66 ASCLYGAMVRDGVSPNKFTWSLVAQILCRSGKFEVVLGLLDS-----GIYSSVMYNLVID 120
A ++ M + G P FT+ + + LC+ G L S +VMYN ++
Sbjct: 562 AFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLT 621
Query: 121 FYSKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIV------GLM 174
K G+ A EM R++ P TY+S++ G R KT ++ G +
Sbjct: 622 AMCKSGNLAKAVSLFGEMVQ-RSILPDSYTYTSLISGLCRKGKTVIAILFAKEAEARGNV 680
Query: 175 VEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDD-TCGCMLKALSKE 233
+ K++ F+ G Q + A + F+ D D T M+ S+
Sbjct: 681 LPNKVMYTCFVDGMFKAGQ--------WKAGIYFREQMDNLGHTPDIVTTNAMIDGYSRM 732
Query: 234 GRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMEL 293
G++++ + + + + Y ++ K L R ++ G +P +
Sbjct: 733 GKIEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTC 792
Query: 294 SRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEK 353
V C + ++L A + +G+ +D + + L+ C+N +I+ A L +
Sbjct: 793 HSLVLGICESNMLEIGLKILKAFICRGVEVDRYTFNMLISKCCANGEINWAFDLVKVMTS 852
Query: 354 LKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSS-SFVIVVSRLCHLKELRK 412
L SLD T D ++ L ++ R +E+ + M + + S ++ +++ LC + +++
Sbjct: 853 LGISLDKDTCDAMVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLINGLCRVGDIKT 912
Query: 413 AMKNHDEMLKMGHK 426
A +EM+ HK
Sbjct: 913 AFVVKEEMI--AHK 924
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 108/487 (22%), Positives = 200/487 (41%), Gaps = 63/487 (12%)
Query: 4 SCEGRDSQSDALSLVLDCYSHKGLFMDGLEVY-RMMRVYGFVPAVSACNALLDALYRQNE 62
S +G D S +++ + G F E+ R+ RV G P + L+ R
Sbjct: 430 SKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRV-GLSPNGIIYSTLIYNCCRMGC 488
Query: 63 IRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSGKF----EVVLGLLDSGIY-SSVMYNL 117
++ A +Y AM+ +G + + FT++++ LC++GK E + + GI ++V ++
Sbjct: 489 LKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDC 548
Query: 118 VIDFYSKKGDFGAAFDRLNEMCN-GRNLTPGFSTYSSILDG---------ARRYEKT--- 164
+I+ Y G+ AF +EM G + P F TY S+L G A ++ K+
Sbjct: 549 LINGYGNSGEGLKAFSVFDEMTKVGHH--PTFFTYGSLLKGLCKGGHLREAEKFLKSLHA 606
Query: 165 --EVSDRIV---------------------GLMVEKKLLPKHFLSGNDYVIQKLSDMGKT 201
D ++ G MV++ +LP + + +I L GKT
Sbjct: 607 VPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTS--LISGLCRKGKT 664
Query: 202 YAAEMIFKRACDEKIELQDDTC-GCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYA 260
A + K A L + C + + K G+ K I + G T A
Sbjct: 665 VIAILFAKEAEARGNVLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDNLGHTPDIVTTNA 724
Query: 261 FVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEE---LLSAVL 317
++ + + E+ LL ++ + P L+ + G K K+V L +++
Sbjct: 725 MIDGYSRMGKIEKTNDLLPEMGNQNGGP---NLTTYNILLHGYSKRKDVSTSFLLYRSII 781
Query: 318 DKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKG-SLDVATYDVLLDGLFKDGRM 376
G+L D C SL+ C + ++ + + +K +G +D T+++L+ +G +
Sbjct: 782 LNGILPDKLTCHSLVLGICESNMLEIGLKI-LKAFICRGVEVDRYTFNMLISKCCANGEI 840
Query: 377 EEAVRIFDYMKELKVV----SSSSFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDEATY 432
A + M L + + + V V++R +E R + EM K G P+ Y
Sbjct: 841 NWAFDLVKVMTSLGISLDKDTCDAMVSVLNRNHRFQESRMVLH---EMSKQGISPESRKY 897
Query: 433 KQVISGF 439
+I+G
Sbjct: 898 IGLINGL 904
>sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670,
mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2
SV=2
Length = 630
Score = 120 bits (302), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 99/430 (23%), Positives = 193/430 (44%), Gaps = 9/430 (2%)
Query: 16 SLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVR 75
S++++C+ + L V M G+ P + ++LL+ I A L M
Sbjct: 120 SILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFV 179
Query: 76 DGVSPNKFTWSLVAQILCRSGKFEVVLGLLDSGIYSS-----VMYNLVIDFYSKKGDFGA 130
G PN T++ + L K + L+D + V Y +V++ K+GD
Sbjct: 180 TGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDL 239
Query: 131 AFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDY 190
AF+ LN+M G+ L PG Y++I+DG +Y+ + + + M K + P +
Sbjct: 240 AFNLLNKMEQGK-LEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSS-- 296
Query: 191 VIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERG 250
+I L + G+ A + + KI T ++ A KEG++ EA ++Y + +R
Sbjct: 297 LISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRS 356
Query: 251 ITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVE 310
I Y + +N C + +E + +V + P + + + C + +E
Sbjct: 357 IDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGM 416
Query: 311 ELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGL 370
E+ + +GL+ ++ + L++ D A + ++ ++ TY+ LLDGL
Sbjct: 417 EVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGL 476
Query: 371 FKDGRMEEAVRIFDYMKELKVVSS-SSFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDE 429
K+G++E+A+ +F+Y++ K+ + ++ I++ +C ++ + G KPD
Sbjct: 477 CKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDV 536
Query: 430 ATYKQVISGF 439
Y +ISGF
Sbjct: 537 VAYNTMISGF 546
Score = 112 bits (279), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 95/440 (21%), Positives = 187/440 (42%), Gaps = 17/440 (3%)
Query: 7 GRDSQSDALSLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLA 66
G + LS +L+ Y H + + + M V G+ P N L+ L+ N+ A
Sbjct: 146 GYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEA 205
Query: 67 SCLYGAMVRDGVSPNKFTWSLVAQILCRSGKFEVVLGLLD--------SGIYSSVMYNLV 118
L MV G P+ T+ +V LC+ G ++ LL+ G+ ++YN +
Sbjct: 206 MALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGV---LIYNTI 262
Query: 119 IDFYSKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKK 178
ID K A + EM + + P TYSS++ Y + + R++ M+E+K
Sbjct: 263 IDGLCKYKHMDDALNLFKEM-ETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERK 321
Query: 179 LLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKE 238
+ P F +I GK AE ++ I+ T ++ R+ E
Sbjct: 322 INPDVFTFSA--LIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDE 379
Query: 239 AIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVA 298
A Q++ + + Y + CK + EE + R++ +RG + + + +
Sbjct: 380 AKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQ 439
Query: 299 SQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSL 358
G +E+ ++ G+ + ++L++ C N +++KA+ + +++ K
Sbjct: 440 GLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEP 499
Query: 359 DVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSS--SFVIVVSRLCHLKELRKAMKN 416
+ TY+++++G+ K G++E+ +F + LK V ++ ++S C +A
Sbjct: 500 TIYTYNIMIEGMCKAGKVEDGWDLFCNL-SLKGVKPDVVAYNTMISGFCRKGSKEEADAL 558
Query: 417 HDEMLKMGHKPDEATYKQVI 436
EM + G P+ Y +I
Sbjct: 559 FKEMKEDGTLPNSGCYNTLI 578
Score = 91.3 bits (225), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 85/401 (21%), Positives = 171/401 (42%), Gaps = 9/401 (2%)
Query: 45 PAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSGKFEVVLGL 104
P++ + LL A+ + N+ + L M G+ N +T+S++ CR + + L +
Sbjct: 79 PSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPLALAV 138
Query: 105 LDSGIYSSVMYNLV-----IDFYSKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDGAR 159
L + N+V ++ Y A +++M P T+++++ G
Sbjct: 139 LGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFV-TGYQPNTVTFNTLIHGLF 197
Query: 160 RYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQ 219
+ K + ++ MV K P G V+ L G T A + + K+E
Sbjct: 198 LHNKASEAMALIDRMVAKGCQPDLVTYG--VVVNGLCKRGDTDLAFNLLNKMEQGKLEPG 255
Query: 220 DDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLR 279
++ L K + +A+ ++ + +GI Y + ++ LC + + LL
Sbjct: 256 VLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLS 315
Query: 280 DVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNR 339
D++ER P S + + +GK E E+L ++ + + SSL+ +C +
Sbjct: 316 DMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHD 375
Query: 340 QIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSS-SFV 398
++D+A + + DV TY+ L+ G K R+EE + +F M + +V ++ ++
Sbjct: 376 RLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYN 435
Query: 399 IVVSRLCHLKELRKAMKNHDEMLKMGHKPDEATYKQVISGF 439
I++ L + A + EM+ G P+ TY ++ G
Sbjct: 436 ILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGL 476
Score = 87.0 bits (214), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 86/392 (21%), Positives = 171/392 (43%), Gaps = 21/392 (5%)
Query: 61 NEIRL--ASCLYGAMVRDGVSPNKFTWSLVAQILCRSGKFEVVLGLLDS----GI-YSSV 113
+E++L A L+G MV+ P+ +S + + + KF+VV+ L + GI ++
Sbjct: 58 SELKLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHY 117
Query: 114 MYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGL 173
Y+++I+ + ++ A L +M P T SS+L+G ++ + +V
Sbjct: 118 TYSILINCFCRRSQLPLALAVLGKMMK-LGYEPNIVTLSSLLNGYCHSKRISEAVALVDQ 176
Query: 174 MVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKE 233
M P + +I L K A + R + + T G ++ L K
Sbjct: 177 MFVTGYQPNTVTF--NTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKR 234
Query: 234 GRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMEL 293
G A + + + + + Y ++ LCK ++ L +++ +G P +
Sbjct: 235 GDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTY 294
Query: 294 SRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEK 353
S ++ C G+W + LLS ++++ + D F S+L++ + ++ +A L+ ++ K
Sbjct: 295 SSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVK 354
Query: 354 LKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSR------LCHL 407
+ TY L++G R++EA ++F++M VS F VV+ C
Sbjct: 355 RSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFM-----VSKHCFPDVVTYNTLIKGFCKY 409
Query: 408 KELRKAMKNHDEMLKMGHKPDEATYKQVISGF 439
K + + M+ EM + G + TY +I G
Sbjct: 410 KRVEEGMEVFREMSQRGLVGNTVTYNILIQGL 441
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 78/185 (42%), Gaps = 7/185 (3%)
Query: 260 AFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDK 319
+ +N C + E L+ + GY P + + + K E L+ ++ K
Sbjct: 156 SLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAK 215
Query: 320 GLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEA 379
G D ++ C D A L K+E+ K V Y+ ++DGL K M++A
Sbjct: 216 GCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDA 275
Query: 380 VRIFDYMK----ELKVVSSSSFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDEATYKQV 435
+ +F M+ VV+ SS ++S LC+ A + +M++ PD T+ +
Sbjct: 276 LNLFKEMETKGIRPNVVTYSS---LISCLCNYGRWSDASRLLSDMIERKINPDVFTFSAL 332
Query: 436 ISGFM 440
I F+
Sbjct: 333 IDAFV 337
Score = 32.3 bits (72), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 31/70 (44%)
Query: 30 DGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVA 89
DG +++ + + G P V A N ++ R+ A L+ M DG PN ++ +
Sbjct: 519 DGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLI 578
Query: 90 QILCRSGKFE 99
+ R G E
Sbjct: 579 RARLRDGDRE 588
>sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1
PE=2 SV=1
Length = 791
Score = 118 bits (296), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 96/447 (21%), Positives = 198/447 (44%), Gaps = 46/447 (10%)
Query: 1 MIQSCEGRDSQSDALS--LVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALY 58
M+ G S D +S V++ + +G Y M G +P V N+++ AL
Sbjct: 183 MMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALC 242
Query: 59 RQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSGKFEVVLGLL----DSGIYSSVM 114
+ + A + MV++GV P+ T++ + C SG+ + +G L G+ V+
Sbjct: 243 KAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVV 302
Query: 115 -YNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGL 173
Y+L++D+ K G A + M R L P +TY ++L G ++ L
Sbjct: 303 TYSLLMDYLCKNGRCMEARKIFDSMTK-RGLKPEITTYGTLLQGYATKGALVEMHGLLDL 361
Query: 174 MVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKE 233
MV + P H+ +F ++ A +K+
Sbjct: 362 MVRNGIHPDHY----------------------VFS---------------ILICAYAKQ 384
Query: 234 GRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMEL 293
G+V +A+ ++ + ++G+ Y A + +LCK + E+ +++ G P +
Sbjct: 385 GKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVY 444
Query: 294 SRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEK 353
+ + C KW+ EEL+ +LD+G+ L++ +S+++ +C ++ ++ L + +
Sbjct: 445 NSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVR 504
Query: 354 LKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSS-SFVIVVSRLCHLKELRK 412
+ +V TY+ L++G G+M+EA+++ M + + ++ ++ +++ C + +
Sbjct: 505 IGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMED 564
Query: 413 AMKNHDEMLKMGHKPDEATYKQVISGF 439
A+ EM G PD TY ++ G
Sbjct: 565 ALVLFKEMESSGVSPDIITYNIILQGL 591
Score = 77.0 bits (188), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 74/374 (19%), Positives = 159/374 (42%), Gaps = 10/374 (2%)
Query: 16 SLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVR 75
SL++D G M+ +++ M G P ++ LL + + L MVR
Sbjct: 305 SLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVR 364
Query: 76 DGVSPNKFTWSLVAQILCRSGKFE----VVLGLLDSGIY-SSVMYNLVIDFYSKKGDFGA 130
+G+ P+ + +S++ + GK + V + G+ ++V Y VI K G
Sbjct: 365 NGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVED 424
Query: 131 AFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKL-LPKHFLSGND 189
A +M + L+PG Y+S++ G K E ++ ++ M+++ + L F +
Sbjct: 425 AMLYFEQMID-EGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNS-- 481
Query: 190 YVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISER 249
+I G+ +E +F+ ++ T ++ G++ EA+++ +
Sbjct: 482 -IIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSV 540
Query: 250 GITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEV 309
G+ Y +N CK + E+ L +++ G P + + + +
Sbjct: 541 GLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAA 600
Query: 310 EELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDG 369
+EL + + G ++ + ++ C N+ D A+ + + + L+ T+++++D
Sbjct: 601 KELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDA 660
Query: 370 LFKDGRMEEAVRIF 383
L K GR +EA +F
Sbjct: 661 LLKVGRNDEAKDLF 674
Score = 76.6 bits (187), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 65/311 (20%), Positives = 136/311 (43%), Gaps = 37/311 (11%)
Query: 139 CNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDM 198
C L GF+ +++ R + + + GL +K+ D V+++++++
Sbjct: 98 CRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTS-----DAMDIVLRRMTEL 152
Query: 199 G---KTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISER---GIT 252
G ++ ++ K CDE R +EA+++ H++++ G
Sbjct: 153 GCIPNVFSYNILLKGLCDEN-------------------RSQEALELLHMMADDRGGGSP 193
Query: 253 VRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEEL 312
Y +N KE ++ ++++RG +P + + +A+ C + E+
Sbjct: 194 PDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEV 253
Query: 313 LSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFK 372
L+ ++ G++ D +S++ YCS+ Q +AI K+ DV TY +L+D L K
Sbjct: 254 LNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCK 313
Query: 373 DGRMEEAVRIFDYMK----ELKVVSSSSFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPD 428
+GR EA +IFD M + ++ + + + + L E+ + D M++ G PD
Sbjct: 314 NGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLL---DLMVRNGIHPD 370
Query: 429 EATYKQVISGF 439
+ +I +
Sbjct: 371 HYVFSILICAY 381
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 79/407 (19%), Positives = 169/407 (41%), Gaps = 40/407 (9%)
Query: 15 LSLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMV 74
S+++ Y+ +G + V+ MR G P A++ L + + A + M+
Sbjct: 374 FSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMI 433
Query: 75 RDGVSPNKFTWSLVAQILCRSGKF----EVVLGLLDSGI-YSSVMYNLVIDFYSKKGDFG 129
+G+SP ++ + LC K+ E++L +LD GI +++ +N +ID + K+G
Sbjct: 434 DEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVI 493
Query: 130 AAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSG-- 187
+ ++L E+ + P TY+++++G K + + +++ MV L P
Sbjct: 494 ES-EKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTL 552
Query: 188 -NDY------------------------------VIQKLSDMGKTYAAEMIFKRACDEKI 216
N Y ++Q L +T AA+ ++ R +
Sbjct: 553 INGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGT 612
Query: 217 ELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCG 276
+++ T +L L K +A+Q++ + + + + ++ L K + +E
Sbjct: 613 QIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKD 672
Query: 277 LLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYC 336
L G +P + G+G +E+++L ++ D G +DS + ++
Sbjct: 673 LFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELL 732
Query: 337 SNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIF 383
+I +A I++ SL+ +T + +D L G+ +E R
Sbjct: 733 QRGEITRAGTYLSMIDEKHFSLEASTASLFID-LLSGGKYQEYYRFL 778
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 81/393 (20%), Positives = 147/393 (37%), Gaps = 77/393 (19%)
Query: 70 YGAMVRDG---VSPNKFTWSLVAQILCRSGKFEVVLGLLDSGIYSSVMYNLVIDFYSKKG 126
Y M R G V+P+ T+ ++ CR+G+ ++
Sbjct: 72 YNRMARAGADEVTPDLCTYGILIGCCCRAGRLDL-------------------------- 105
Query: 127 DFGAAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLS 186
GF+ +++ R + + + GL +K+
Sbjct: 106 --------------------GFAALGNVIKKGFRVDAIAFTPLLKGLCADKRT-----SD 140
Query: 187 GNDYVIQKLSDMG---KTYAAEMIFKRACDEK-----IEL----QDDTCG---------- 224
D V+++++++G ++ ++ K CDE +EL DD G
Sbjct: 141 AMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYT 200
Query: 225 CMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVER 284
++ KEG +A YH + +RGI Y + + LCK ++ +L +V+
Sbjct: 201 TVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKN 260
Query: 285 GYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKA 344
G +P M + + C G+ KE L + G+ D S LM+Y C N + +A
Sbjct: 261 GVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEA 320
Query: 345 IALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSS-SFVIVVSR 403
+ + K ++ TY LL G G + E + D M + F I++
Sbjct: 321 RKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICA 380
Query: 404 LCHLKELRKAMKNHDEMLKMGHKPDEATYKQVI 436
++ +AM +M + G P+ TY VI
Sbjct: 381 YAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVI 413
Score = 52.8 bits (125), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/209 (20%), Positives = 98/209 (46%), Gaps = 8/209 (3%)
Query: 239 AIQIYHLISERG---ITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSR 295
A+ Y+ ++ G +T Y + C+ + + L +V+++G+ A+ +
Sbjct: 68 AVSRYNRMARAGADEVTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTP 127
Query: 296 FVASQCGKGKWKEVEEL-LSAVLDKGLLLDSFCCSSLMEYYC-SNRQIDKAIALHIKIEK 353
+ C + + ++ L + + G + + F + L++ C NR + LH+ +
Sbjct: 128 LLKGLCADKRTSDAMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADD 187
Query: 354 LKG--SLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSS-SFVIVVSRLCHLKEL 410
G DV +Y +++G FK+G ++A + M + ++ ++ +++ LC + +
Sbjct: 188 RGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAM 247
Query: 411 RKAMKNHDEMLKMGHKPDEATYKQVISGF 439
KAM+ + M+K G PD TY ++ G+
Sbjct: 248 DKAMEVLNTMVKNGVMPDCMTYNSILHGY 276
>sp|Q9FJE6|PP437_ARATH Putative pentatricopeptide repeat-containing protein At5g59900
OS=Arabidopsis thaliana GN=At5g59900 PE=3 SV=1
Length = 907
Score = 118 bits (296), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 100/430 (23%), Positives = 198/430 (46%), Gaps = 10/430 (2%)
Query: 17 LVLDCYSHKGLFMDGLEVYRMMRV-YGFVPAVSACNALLDALYRQNEIRLASCLYGAMVR 75
L++ Y +DG+ V++MM +P V +ALL L + LA L+ MV
Sbjct: 161 LLIQHYVRSRRVLDGVLVFKMMITKVSLLPEVRTLSALLHGLVKFRHFGLAMELFNDMVS 220
Query: 76 DGVSPNKFTWSLVAQILCR----SGKFEVVLGLLDSGI-YSSVMYNLVIDFYSKKGDFGA 130
G+ P+ + ++ V + LC S E++ + +G + V YN++ID KK
Sbjct: 221 VGIRPDVYIYTGVIRSLCELKDLSRAKEMIAHMEATGCDVNIVPYNVLIDGLCKKQKVWE 280
Query: 131 AFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDY 190
A ++ G++L P TY +++ G + ++ E+ ++ M+ + P +
Sbjct: 281 AVGIKKDLA-GKDLKPDVVTYCTLVYGLCKVQEFEIGLEMMDEMLCLRFSPSE--AAVSS 337
Query: 191 VIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERG 250
+++ L GK A + KR D + ++ +L K + EA ++ + + G
Sbjct: 338 LVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFHEAELLFDRMGKIG 397
Query: 251 ITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVE 310
+ D Y +++ C+ + + L ++V+ G + + C G E
Sbjct: 398 LRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAE 457
Query: 311 ELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGL 370
++ +++K L +SLM YCS +I+KA+ L+ ++ + + T+ LL GL
Sbjct: 458 GFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGL 517
Query: 371 FKDGRMEEAVRIFDYMKELKVVSSS-SFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDE 429
F+ G + +AV++F+ M E V + ++ +++ C ++ KA + EM + G PD
Sbjct: 518 FRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDT 577
Query: 430 ATYKQVISGF 439
+Y+ +I G
Sbjct: 578 YSYRPLIHGL 587
Score = 94.7 bits (234), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 110/536 (20%), Positives = 218/536 (40%), Gaps = 114/536 (21%)
Query: 14 ALSLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAM 73
A+S +++ +G + L + + + +G P + NAL+D+L + + A L+ M
Sbjct: 334 AVSSLVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFHEAELLFDRM 393
Query: 74 VRDGVSPNKFTWSLVAQILCRSGKFEVVLGLL----DSGI------YSS----------- 112
+ G+ PN T+S++ + CR GK + L L D+G+ Y+S
Sbjct: 394 GKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDI 453
Query: 113 -------------------VMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFSTYSS 153
V Y ++ Y KG A +EM G+ + P T+++
Sbjct: 454 SAAEGFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEM-TGKGIAPSIYTFTT 512
Query: 154 ILDGARRYEKTEVSDRIVGLMVEKKLLPKHF--------------LSGNDYVIQKLSDMG 199
+L G R + ++ M E + P +S ++++++ G
Sbjct: 513 LLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKG 572
Query: 200 ---KTYAAEMIFKRAC------DEKI----------ELQDDTCGCMLKALSKEGRVKEAI 240
TY+ + C + K+ EL + +L +EG+++EA+
Sbjct: 573 IVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICYTGLLHGFCREGKLEEAL 632
Query: 241 QIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQ 300
+ + +RG+ + Y ++ K + GLL+++ +RG P + + + ++
Sbjct: 633 SVCQEMVQRGVDLDLVCYGVLIDGSLKHKDRKLFFGLLKEMHDRGLKPDDVIYTSMIDAK 692
Query: 301 CGKGKWKEVEELLSAVLDKG---------LLLDSFCCSSLM---EYYCSNRQ-------- 340
G +KE + ++++G +++ C + + E CS Q
Sbjct: 693 SKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAEVLCSKMQPVSSVPNQ 752
Query: 341 ----------------IDKAIALHIKIEKLKGSL-DVATYDVLLDGLFKDGRMEEAVRIF 383
+ KA+ LH I LKG L + ATY++L+ G + GR+EEA +
Sbjct: 753 VTYGCFLDILTKGEVDMQKAVELHNAI--LKGLLANTATYNMLIRGFCRQGRIEEASELI 810
Query: 384 DYMKELKVVSSS-SFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDEATYKQVISG 438
M V ++ +++ LC +++KA++ + M + G +PD Y +I G
Sbjct: 811 TRMIGDGVSPDCITYTTMINELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLIHG 866
Score = 92.4 bits (228), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 91/415 (21%), Positives = 174/415 (41%), Gaps = 44/415 (10%)
Query: 28 FMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSL 87
F GLE+ M F P+ +A ++L++ L ++ +I A L +V GVSPN F ++
Sbjct: 313 FEIGLEMMDEMLCLRFSPSEAAVSSLVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNA 372
Query: 88 VAQILCRSGKFEVVLGLLDS----GIYSS-VMYNLVIDFYSKKGDFGAAFDRLNEMCNGR 142
+ LC+ KF L D G+ + V Y+++ID + ++G A L EM +
Sbjct: 373 LIDSLCKGRKFHEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVD-T 431
Query: 143 NLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTY 202
L Y+S+++G ++ ++ + M+ KKL P V+ S MG
Sbjct: 432 GLKLSVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEPT--------VVTYTSLMG--- 480
Query: 203 AAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFV 262
+G++ +A+++YH ++ +GI + +
Sbjct: 481 --------------------------GYCSKGKINKALRLYHEMTGKGIAPSIYTFTTLL 514
Query: 263 NVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLL 322
+ L + + L ++ E P + + + C +G + E L + +KG++
Sbjct: 515 SGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIV 574
Query: 323 LDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRI 382
D++ L+ C Q +A + K L+ Y LL G ++G++EEA+ +
Sbjct: 575 PDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICYTGLLHGFCREGKLEEALSV 634
Query: 383 FDYMKELKV-VSSSSFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDEATYKQVI 436
M + V + + +++ K+ + EM G KPD+ Y +I
Sbjct: 635 CQEMVQRGVDLDLVCYGVLIDGSLKHKDRKLFFGLLKEMHDRGLKPDDVIYTSMI 689
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 61/282 (21%), Positives = 122/282 (43%), Gaps = 12/282 (4%)
Query: 51 NALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSGKFEVVLGLL----D 106
LL R+ ++ A + MV+ GV + + ++ + ++ GLL D
Sbjct: 616 TGLLHGFCREGKLEEALSVCQEMVQRGVDLDLVCYGVLIDGSLKHKDRKLFFGLLKEMHD 675
Query: 107 SGIYSS-VMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTE 165
G+ V+Y +ID SK GDF AF + M N P TY+++++G +
Sbjct: 676 RGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMIN-EGCVPNEVTYTAVINGLCKAGFVN 734
Query: 166 VSDRIVGLMVEKKLLPKHFLSGN--DYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTC 223
++ + M +P G D + + DM K A E+ A + + T
Sbjct: 735 EAEVLCSKMQPVSSVPNQVTYGCFLDILTKGEVDMQK--AVEL--HNAILKGLLANTATY 790
Query: 224 GCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVE 283
+++ ++GR++EA ++ + G++ Y +N LC+ + ++ L + E
Sbjct: 791 NMLIRGFCRQGRIEEASELITRMIGDGVSPDCITYTTMINELCRRNDVKKAIELWNSMTE 850
Query: 284 RGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDS 325
+G P + + + C G+ + EL + +L +GL+ ++
Sbjct: 851 KGIRPDRVAYNTLIHGCCVAGEMGKATELRNEMLRQGLIPNN 892
>sp|Q9SH26|PP102_ARATH Pentatricopeptide repeat-containing protein At1g63400
OS=Arabidopsis thaliana GN=At1g63400 PE=2 SV=1
Length = 577
Score = 117 bits (293), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 99/432 (22%), Positives = 186/432 (43%), Gaps = 44/432 (10%)
Query: 14 ALSLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAM 73
LS +L+ Y H D + + M G+ P L+ L+ N+ A L M
Sbjct: 157 TLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRM 216
Query: 74 VRDGVSPNKFTWSLVAQILCRSGKFEVVLGLLD----SGIYSS-VMYNLVIDFYSKKGDF 128
V+ G PN T+ +V LC+ G ++ LL+ + I ++ V+Y+ VID K
Sbjct: 217 VQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHE 276
Query: 129 GAAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGN 188
A + EM N + + P TYSS++ YE+ + R++ M+E+K+ P
Sbjct: 277 DDALNLFTEMEN-KGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVV---- 331
Query: 189 DYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISE 248
T ++ A KEG++ EA ++Y + +
Sbjct: 332 ---------------------------------TFNALIDAFVKEGKLVEAEKLYDEMIK 358
Query: 249 RGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKE 308
R I Y + +N C + +E + ++ + P + + + C + E
Sbjct: 359 RSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDE 418
Query: 309 VEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLD 368
EL + +GL+ ++ ++L+ + R D A + ++ ++ TY+ LLD
Sbjct: 419 GVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLD 478
Query: 369 GLFKDGRMEEAVRIFDYMKELKVVSS-SSFVIVVSRLCHLKELRKAMKNHDEMLKMGHKP 427
GL K+G++E+A+ +F+Y++ K+ + ++ I++ +C ++ + G KP
Sbjct: 479 GLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKP 538
Query: 428 DEATYKQVISGF 439
D Y +ISGF
Sbjct: 539 DVIIYNTMISGF 550
Score = 98.6 bits (244), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 87/405 (21%), Positives = 179/405 (44%), Gaps = 15/405 (3%)
Query: 44 VPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSGKFEVVLG 103
+P++ N LL A+ + + L L M R G+S N +T++++ CR + + L
Sbjct: 82 LPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALA 141
Query: 104 LLDSGI-----YSSVMYNLVIDFY---SKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSIL 155
LL + S V + +++ Y + D A D++ EM P T+++++
Sbjct: 142 LLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEM----GYRPDTITFTTLI 197
Query: 156 DGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEK 215
G + K + +V MV++ P G V+ L G A + + K
Sbjct: 198 HGLFLHNKASEAVALVDRMVQRGCQPNLVTYG--VVVNGLCKRGDIDLAFNLLNKMEAAK 255
Query: 216 IELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVC 275
IE ++ +L K +A+ ++ + +G+ Y + ++ LC + +
Sbjct: 256 IEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDAS 315
Query: 276 GLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYY 335
LL D++ER P + + + + +GK E E+L ++ + + D F SSL+ +
Sbjct: 316 RLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGF 375
Query: 336 CSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSS 395
C + ++D+A + + +V TY+ L++G K R++E V +F M + +V ++
Sbjct: 376 CMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNT 435
Query: 396 -SFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDEATYKQVISGF 439
++ ++ ++ A +M+ G P+ TY ++ G
Sbjct: 436 VTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGL 480
Score = 85.5 bits (210), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 78/377 (20%), Positives = 163/377 (43%), Gaps = 9/377 (2%)
Query: 69 LYGAMVRDGVSPNKFTWSLVAQILCRSGKFEVVLGLLDS----GIYSSV-MYNLVIDFYS 123
L+G MV+ P+ F ++ + + + KF++V+ L + GI ++ YN++I+ +
Sbjct: 72 LFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFC 131
Query: 124 KKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKH 183
++ A L +M P T SS+L+G ++ + +V MVE P
Sbjct: 132 RRSQISLALALLGKMMK-LGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDT 190
Query: 184 FLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIY 243
+I L K A + R + T G ++ L K G + A +
Sbjct: 191 ITFTT--LIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLL 248
Query: 244 HLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGK 303
+ + I Y ++ LCK ++ L ++ +G P + S ++ C
Sbjct: 249 NKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNY 308
Query: 304 GKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATY 363
+W + LLS ++++ + + ++L++ + ++ +A L+ ++ K D+ TY
Sbjct: 309 ERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTY 368
Query: 364 DVLLDGLFKDGRMEEAVRIFDYMKELKVVSS-SSFVIVVSRLCHLKELRKAMKNHDEMLK 422
L++G R++EA +F+ M + ++ +++ C K + + ++ EM +
Sbjct: 369 SSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQ 428
Query: 423 MGHKPDEATYKQVISGF 439
G + TY +I GF
Sbjct: 429 RGLVGNTVTYTTLIHGF 445
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 85/192 (44%), Gaps = 1/192 (0%)
Query: 249 RGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKE 308
R + DY + + ++ GL +V+ +P E ++ +++ K+
Sbjct: 44 RAFSSGSGDYREILRNGLHSMKLDDAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDL 103
Query: 309 VEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLD 368
V L + G+ + + + L+ +C QI A+AL K+ KL + T LL+
Sbjct: 104 VISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLN 163
Query: 369 GLFKDGRMEEAVRIFDYMKELKVVSSS-SFVIVVSRLCHLKELRKAMKNHDEMLKMGHKP 427
G R+ +AV + D M E+ + +F ++ L + +A+ D M++ G +P
Sbjct: 164 GYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQP 223
Query: 428 DEATYKQVISGF 439
+ TY V++G
Sbjct: 224 NLVTYGVVVNGL 235
>sp|Q0WKV3|PPR36_ARATH Pentatricopeptide repeat-containing protein At1g12300,
mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2
SV=1
Length = 637
Score = 115 bits (289), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 102/441 (23%), Positives = 195/441 (44%), Gaps = 11/441 (2%)
Query: 7 GRDSQSDALSLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLA 66
G + + S +++ +G + LE+ M G P + N L++ L + A
Sbjct: 153 GYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEA 212
Query: 67 SCLYGAMVRDGVSPNKFTWSLVAQILCRSGKFEVVLGLL----DSGI-YSSVMYNLVIDF 121
L MV G PN T+ V ++C+SG+ + + LL + I +V Y+++ID
Sbjct: 213 MLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDG 272
Query: 122 YSKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLP 181
K G AF+ NEM + +T TY+ ++ G + + +++ M+++K+ P
Sbjct: 273 LCKHGSLDNAFNLFNEM-EMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINP 331
Query: 182 KHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQ 241
+ +I GK AE + K I T ++ KE + +A Q
Sbjct: 332 N--VVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQ 389
Query: 242 IYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQC 301
+ L+ +G + +N CK ++ ++ L R + RG + + + + C
Sbjct: 390 MVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFC 449
Query: 302 GKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVA 361
GK +EL ++ + + + L++ C N + +KA+ + KIEK K LD+
Sbjct: 450 ELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIG 509
Query: 362 TYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSS--SFVIVVSRLCHLKELRKAMKNHDE 419
Y++++ G+ ++++A +F + LK V ++ I++ LC L +A +
Sbjct: 510 IYNIIIHGMCNASKVDDAWDLFCSL-PLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRK 568
Query: 420 MLKMGHKPDEATYKQVISGFM 440
M + GH PD TY +I +
Sbjct: 569 MEEDGHAPDGWTYNILIRAHL 589
Score = 102 bits (253), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 89/410 (21%), Positives = 180/410 (43%), Gaps = 36/410 (8%)
Query: 32 LEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQI 91
L + + M + G + + +++ R ++ LA G +++ G PN T+S +
Sbjct: 108 LALCKQMELKGIAHNLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLING 167
Query: 92 LCRSGKFEVVLGLLDSGIYSSVMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFSTY 151
LC G+ L L+ DR+ EM + P T
Sbjct: 168 LCLEGRVSEALELV---------------------------DRMVEMGH----KPDLITI 196
Query: 152 SSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRA 211
+++++G K + ++ MVE P G V+ + G+T A + ++
Sbjct: 197 NTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGP--VLNVMCKSGQTALAMELLRKM 254
Query: 212 CDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQP 271
+ I+L ++ L K G + A +++ + +GIT Y + C +
Sbjct: 255 EERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRW 314
Query: 272 EEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSL 331
++ LLRD+++R P + S + S +GK +E EEL ++ +G+ D+ +SL
Sbjct: 315 DDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSL 374
Query: 332 MEYYCSNRQIDKAIALHIKIEKLKG-SLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELK 390
++ +C +DKA + + + KG ++ T+++L++G K R+++ + +F M
Sbjct: 375 IDGFCKENHLDKANQM-VDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRG 433
Query: 391 VVSSS-SFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDEATYKQVISGF 439
VV+ + ++ ++ C L +L A + EM+ P+ TYK ++ G
Sbjct: 434 VVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGL 483
Score = 89.0 bits (219), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 88/419 (21%), Positives = 176/419 (42%), Gaps = 50/419 (11%)
Query: 30 DGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVA 89
D ++++R M +P V + L A+ + + L L M G++ N +T S++
Sbjct: 71 DAIDLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMI 130
Query: 90 QILCRSGKFEVVLGLLDSGIY-----SSVMYNLVIDFYSKKGDFGAAF---DRLNEMCNG 141
CR K + + I +++ ++ +I+ +G A DR+ EM +
Sbjct: 131 NCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGH- 189
Query: 142 RNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKT 201
P T +++++G K + ++ MVE P G V+ + G+T
Sbjct: 190 ---KPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGP--VLNVMCKSGQT 244
Query: 202 YAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAF 261
A + ++ + I+L ++ L K G + A +++ + +GIT Y
Sbjct: 245 ALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNIL 304
Query: 262 VNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGL 321
+ C + ++ LLRD+++R P + S + S +GK +E EEL ++ +G+
Sbjct: 305 IGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGI 364
Query: 322 LLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKG-SLDVATYDVLLDGLFKDGRMEEAV 380
D+ +SL++ +C +DKA + + + KG ++ T+++L++G K R+++ +
Sbjct: 365 APDTITYTSLIDGFCKENHLDKANQM-VDLMVSKGCDPNIRTFNILINGYCKANRIDDGL 423
Query: 381 RIFDYMKELKVVSSSSFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDEATYKQVISGF 439
+F M VV+ D TY +I GF
Sbjct: 424 ELFRKMSLRGVVA----------------------------------DTVTYNTLIQGF 448
Score = 77.0 bits (188), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 81/400 (20%), Positives = 167/400 (41%), Gaps = 40/400 (10%)
Query: 18 VLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDG 77
VL+ G +E+ R M + ++D L + + A L+ M G
Sbjct: 234 VLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKG 293
Query: 78 VSPNKFTWSLVAQILCRSGKFEVVLGLLDSGIYSSVMYNLV-----IDFYSKKGDFGAAF 132
++ N T++++ C +G+++ LL I + N+V ID + K+G A
Sbjct: 294 ITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAE 353
Query: 133 DRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEK--------------- 177
+ EM + R + P TY+S++DG + + ++++V LMV K
Sbjct: 354 ELHKEMIH-RGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILING 412
Query: 178 -----------KLLPKHFLSG-------NDYVIQKLSDMGKTYAAEMIFKRACDEKIELQ 219
+L K L G + +IQ ++GK A+ +F+ K+
Sbjct: 413 YCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPN 472
Query: 220 DDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLR 279
T +L L G ++A++I+ I + + + Y ++ +C + ++ L
Sbjct: 473 IVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFC 532
Query: 280 DVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNR 339
+ +G P + + C KG E E L + + G D + + L+ + +
Sbjct: 533 SLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDG 592
Query: 340 QIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEA 379
K++ L ++++ S+D +T +++D + DGR++++
Sbjct: 593 DATKSVKLIEELKRCGFSVDASTIKMVID-MLSDGRLKKS 631
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 95/196 (48%), Gaps = 6/196 (3%)
Query: 243 YHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCG 302
+ S+R ++ R+ V++ + ++ L RD++ +P ++ SR ++
Sbjct: 46 FSAFSDRNLSYRERLRSGLVDI-----KADDAIDLFRDMIHSRPLPTVIDFSRLFSAIAK 100
Query: 303 KGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVAT 362
++ V L + KG+ + + S ++ +C R++ A + KI KL + T
Sbjct: 101 TKQYDLVLALCKQMELKGIAHNLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTIT 160
Query: 363 YDVLLDGLFKDGRMEEAVRIFDYMKELKVVSS-SSFVIVVSRLCHLKELRKAMKNHDEML 421
+ L++GL +GR+ EA+ + D M E+ + +V+ LC + +AM D+M+
Sbjct: 161 FSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMV 220
Query: 422 KMGHKPDEATYKQVIS 437
+ G +P+ TY V++
Sbjct: 221 EYGCQPNAVTYGPVLN 236
>sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910
OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1
Length = 632
Score = 114 bits (286), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 94/430 (21%), Positives = 190/430 (44%), Gaps = 9/430 (2%)
Query: 16 SLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVR 75
S+ ++C+ + L V M G+ P + ++LL+ I A L MV
Sbjct: 122 SIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVE 181
Query: 76 DGVSPNKFTWSLVAQILCRSGKFEVVLGLLDSGIYSS-----VMYNLVIDFYSKKGDFGA 130
G P+ FT++ + L K + L+D + V Y V++ K+GD
Sbjct: 182 MGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDL 241
Query: 131 AFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDY 190
A L +M G+ + Y++I+DG +Y+ + + + M K + P F +
Sbjct: 242 ALSLLKKMEKGK-IEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSS-- 298
Query: 191 VIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERG 250
+I L + G+ A + + KI T ++ A KEG++ EA ++Y + +R
Sbjct: 299 LISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRS 358
Query: 251 ITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVE 310
I Y + +N C + +E + ++ + P + S + C + +E
Sbjct: 359 IDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGM 418
Query: 311 ELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGL 370
EL + +GL+ ++ ++L+ + R D A + ++ + ++ TY++LLDGL
Sbjct: 419 ELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGL 478
Query: 371 FKDGRMEEAVRIFDYMKELKVVSS-SSFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDE 429
K+G++ +A+ +F+Y++ + ++ I++ +C ++ + + G P+
Sbjct: 479 CKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNV 538
Query: 430 ATYKQVISGF 439
Y +ISGF
Sbjct: 539 IAYNTMISGF 548
Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 91/407 (22%), Positives = 177/407 (43%), Gaps = 21/407 (5%)
Query: 45 PAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSGKFEVVLGL 104
P++ N LL A+ + N+ L L M G+S + +T+S+ CR + + L +
Sbjct: 81 PSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAV 140
Query: 105 L----------DSGIYSSVMYNLVIDFYSKK-GDFGAAFDRLNEMCNGRNLTPGFSTYSS 153
L D SS++ +SK+ D A D++ EM P T+++
Sbjct: 141 LAKMMKLGYEPDIVTLSSLLNGYC---HSKRISDAVALVDQMVEM----GYKPDTFTFTT 193
Query: 154 ILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACD 213
++ G + K + +V MV++ P G V+ L G A + K+
Sbjct: 194 LIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGT--VVNGLCKRGDIDLALSLLKKMEK 251
Query: 214 EKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEE 273
KIE ++ L K + +A+ ++ + +GI Y + ++ LC + +
Sbjct: 252 GKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSD 311
Query: 274 VCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLME 333
LL D++ER P + S + + +GK E E+L ++ + + D F SSL+
Sbjct: 312 ASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLIN 371
Query: 334 YYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVS 393
+C + ++D+A + + +V TY L+ G K R+EE + +F M + +V
Sbjct: 372 GFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVG 431
Query: 394 SS-SFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDEATYKQVISGF 439
++ ++ ++ ++ A +M+ +G P+ TY ++ G
Sbjct: 432 NTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGL 478
Score = 83.2 bits (204), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 82/381 (21%), Positives = 164/381 (43%), Gaps = 17/381 (4%)
Query: 69 LYGAMVRDGVSPNKFTWSLVAQILCRSGKFEVVLGLLDS----GIYSSV-MYNLVIDFYS 123
L+G MV+ P+ ++ + + + KFE+V+ L + GI + Y++ I+ +
Sbjct: 70 LFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFC 129
Query: 124 KKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKH 183
++ A L +M P T SS+L+G ++ + +V MVE P
Sbjct: 130 RRSQLSLALAVLAKMMK-LGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDT 188
Query: 184 FLSGNDYVIQKLSDMGKTYAA----EMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEA 239
F +I L K A + + +R C + T G ++ L K G + A
Sbjct: 189 FTFTT--LIHGLFLHNKASEAVALVDQMVQRGCQPDLV----TYGTVVNGLCKRGDIDLA 242
Query: 240 IQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVAS 299
+ + + + I Y ++ LCK ++ L ++ +G P S ++
Sbjct: 243 LSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISC 302
Query: 300 QCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLD 359
C G+W + LLS ++++ + + S+L++ + ++ +A L+ ++ K D
Sbjct: 303 LCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPD 362
Query: 360 VATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSS-SSFVIVVSRLCHLKELRKAMKNHD 418
+ TY L++G R++EA +F+ M + ++ ++ C K + + M+
Sbjct: 363 IFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFR 422
Query: 419 EMLKMGHKPDEATYKQVISGF 439
EM + G + TY +I GF
Sbjct: 423 EMSQRGLVGNTVTYTTLIHGF 443
Score = 79.3 bits (194), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 98/475 (20%), Positives = 181/475 (38%), Gaps = 78/475 (16%)
Query: 14 ALSLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAM 73
LS +L+ Y H D + + M G+ P L+ L+ N+ A L M
Sbjct: 155 TLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQM 214
Query: 74 VRDGVSPNKFTWSLVAQILCRSGKFEVVLGLL---DSGIYSS--VMYNLVIDFYSKKGDF 128
V+ G P+ T+ V LC+ G ++ L LL + G + V+YN +ID K
Sbjct: 215 VQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHM 274
Query: 129 GAAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGN 188
A + EM N + + P TYSS++ Y + + R++ M+E+K+ P +
Sbjct: 275 DDALNLFTEMDN-KGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPN--VVTF 331
Query: 189 DYVIQKLSDMGKTYAAEMIF----KRACDEKI----ELQDDTC----------------- 223
+I GK AE ++ KR+ D I L + C
Sbjct: 332 SALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMIS 391
Query: 224 ----------GCMLKALSKEGRVKEAIQIYHLISERGIT---------------VRDSD- 257
++K K RV+E ++++ +S+RG+ RD D
Sbjct: 392 KDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDN 451
Query: 258 -------------------YYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVA 298
Y ++ LCK + + + + P + +
Sbjct: 452 AQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIE 511
Query: 299 SQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSL 358
C GK ++ EL + KG+ + ++++ +C ++A +L K+++
Sbjct: 512 GMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLP 571
Query: 359 DVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLKELRKA 413
+ TY+ L+ +DG E + + M+ +S + +V+ + H L K+
Sbjct: 572 NSGTYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLVTNMLHDGRLDKS 626
Score = 58.9 bits (141), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 89/194 (45%), Gaps = 2/194 (1%)
Query: 248 ERGITVRDSDYYAFV-NVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKW 306
ER DY + N L + ++ L D+V+ P +E ++ +++ K+
Sbjct: 40 ERSFASASGDYREILRNRLSDIIKVDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKF 99
Query: 307 KEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVL 366
+ V L + G+ D + S + +C Q+ A+A+ K+ KL D+ T L
Sbjct: 100 ELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSL 159
Query: 367 LDGLFKDGRMEEAVRIFDYMKELKVVSSS-SFVIVVSRLCHLKELRKAMKNHDEMLKMGH 425
L+G R+ +AV + D M E+ + +F ++ L + +A+ D+M++ G
Sbjct: 160 LNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGC 219
Query: 426 KPDEATYKQVISGF 439
+PD TY V++G
Sbjct: 220 QPDLVTYGTVVNGL 233
>sp|Q9CAM8|PP100_ARATH Pentatricopeptide repeat-containing protein At1g63150
OS=Arabidopsis thaliana GN=At1g63150 PE=2 SV=1
Length = 629
Score = 114 bits (284), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 97/429 (22%), Positives = 190/429 (44%), Gaps = 12/429 (2%)
Query: 14 ALSLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAM 73
LS +L+ Y H D + + M G+ P L+ L+ N+ A L M
Sbjct: 155 TLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQM 214
Query: 74 VRDGVSPNKFTWSLVAQILCRSGKFEVVLGLLD----SGIYSS-VMYNLVIDFYSKKGDF 128
V+ G P+ T+ V LC+ G ++ L LL+ + I ++ V++N +ID K
Sbjct: 215 VQRGCQPDLVTYGTVVNGLCKRGDIDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHV 274
Query: 129 GAAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGN 188
A D EM + + P TY+S+++ Y + + R++ M+EKK+ P +
Sbjct: 275 EVAVDLFTEM-ETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPN--VVTF 331
Query: 189 DYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISE 248
+ +I GK AE + + I+ T ++ R+ EA Q++ +
Sbjct: 332 NALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVS 391
Query: 249 RGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKE 308
+ Y +N CK + E+ L R++ +RG + + + + G
Sbjct: 392 KDCLPNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDS 451
Query: 309 VEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLD 368
+ + ++ + D S L+ CS ++D A+ + ++K + L++ Y+ +++
Sbjct: 452 AQMVFKQMVSNRVPTDIMTYSILLHGLCSYGKLDTALVIFKYLQKSEMELNIFIYNTMIE 511
Query: 369 GLFKDGRMEEAVRIFDYMK-ELKVVSSSSFVIVVSRLCHLKELRKAMKNHDEMLKMGHKP 427
G+ K G++ EA +F + + VV+ ++ ++S LC + L++A +M + G P
Sbjct: 512 GMCKAGKVGEAWDLFCSLSIKPDVVTYNT---MISGLCSKRLLQEADDLFRKMKEDGTLP 568
Query: 428 DEATYKQVI 436
+ TY +I
Sbjct: 569 NSGTYNTLI 577
Score = 107 bits (267), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 92/430 (21%), Positives = 191/430 (44%), Gaps = 12/430 (2%)
Query: 16 SLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVR 75
S+ ++C+ + L V M G+ P + ++LL+ I A L MV
Sbjct: 122 SIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVE 181
Query: 76 DGVSPNKFTWSLVAQILCRSGKFEVVLGLLDSGIYSS-----VMYNLVIDFYSKKGDFGA 130
G P+ FT++ + L K + L+D + V Y V++ K+GD
Sbjct: 182 MGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDL 241
Query: 131 AFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDY 190
A + LN+M R + +++I+D +Y EV+ + M K + P + +
Sbjct: 242 ALNLLNKMEAAR-IKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPN--VVTYNS 298
Query: 191 VIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERG 250
+I L + G+ A + ++KI T ++ A KEG++ EA +++ + +R
Sbjct: 299 LINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRS 358
Query: 251 ITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVE 310
I Y +N C ++ +E + + +V + +P + + C + ++
Sbjct: 359 IDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGV 418
Query: 311 ELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGL 370
EL + +GL+ ++ +++++ + D A + ++ + D+ TY +LL GL
Sbjct: 419 ELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMVSNRVPTDIMTYSILLHGL 478
Query: 371 FKDGRMEEAVRIFDYMKELKV-VSSSSFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDE 429
G+++ A+ IF Y+++ ++ ++ + ++ +C ++ +A D + KPD
Sbjct: 479 CSYGKLDTALVIFKYLQKSEMELNIFIYNTMIEGMCKAGKVGEAW---DLFCSLSIKPDV 535
Query: 430 ATYKQVISGF 439
TY +ISG
Sbjct: 536 VTYNTMISGL 545
Score = 87.4 bits (215), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 83/400 (20%), Positives = 163/400 (40%), Gaps = 42/400 (10%)
Query: 45 PAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSGKFEVVLGL 104
P++ N LL A+ + N+ L L M G+S + +T+S+ CR + + L +
Sbjct: 81 PSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAV 140
Query: 105 LDSGIYSSVMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKT 164
L +K G P T SS+L+G ++
Sbjct: 141 L-----------------AKMMKLG--------------YEPDIVTLSSLLNGYCHSKRI 169
Query: 165 EVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAA----EMIFKRACDEKIELQD 220
+ +V MVE P F +I L K A + + +R C +
Sbjct: 170 SDAVALVDQMVEMGYKPDTFTFTT--LIHGLFLHNKASEAVALVDQMVQRGCQPDLV--- 224
Query: 221 DTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRD 280
T G ++ L K G + A+ + + + I + ++ LCK E L +
Sbjct: 225 -TYGTVVNGLCKRGDIDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTE 283
Query: 281 VVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQ 340
+ +G P + + + C G+W + LLS +L+K + + ++L++ + +
Sbjct: 284 METKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGK 343
Query: 341 IDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSS-SSFVI 399
+ +A LH ++ + D TY++L++G R++EA ++F +M + + ++
Sbjct: 344 LVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNT 403
Query: 400 VVSRLCHLKELRKAMKNHDEMLKMGHKPDEATYKQVISGF 439
+++ C K + ++ EM + G + TY +I GF
Sbjct: 404 LINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQGF 443
Score = 58.9 bits (141), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 89/194 (45%), Gaps = 2/194 (1%)
Query: 248 ERGITVRDSDYYAFV-NVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKW 306
ER DY + N L + ++ L D+V+ P +E ++ +++ K+
Sbjct: 40 ERSFASASGDYREILRNRLSDIIKVDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKF 99
Query: 307 KEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVL 366
+ V L + G+ D + S + +C Q+ A+A+ K+ KL D+ T L
Sbjct: 100 ELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSL 159
Query: 367 LDGLFKDGRMEEAVRIFDYMKELKVVSSS-SFVIVVSRLCHLKELRKAMKNHDEMLKMGH 425
L+G R+ +AV + D M E+ + +F ++ L + +A+ D+M++ G
Sbjct: 160 LNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGC 219
Query: 426 KPDEATYKQVISGF 439
+PD TY V++G
Sbjct: 220 QPDLVTYGTVVNGL 233
>sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470,
mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2
SV=1
Length = 619
Score = 114 bits (284), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 93/400 (23%), Positives = 183/400 (45%), Gaps = 13/400 (3%)
Query: 45 PAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSGKFEVVLGL 104
P + + L++ L + + A L MV G P++ T+ V LC+SG + L L
Sbjct: 173 PDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDL 232
Query: 105 L----DSGIYSSVM-YNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDGAR 159
+ I +SV+ Y++VID K G F A NEM + + TYSS++ G
Sbjct: 233 FRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEM-EMKGIKADVVTYSSLIGGLC 291
Query: 160 RYEKTEVSDRIVGLMVEKKLLPK--HFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIE 217
K + +++ M+ + ++P F + D +++ GK A+ ++ I
Sbjct: 292 NDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKE----GKLLEAKELYNEMITRGIA 347
Query: 218 LQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGL 277
T ++ KE + EA Q++ L+ +G Y +N CK + ++ L
Sbjct: 348 PDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRL 407
Query: 278 LRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCS 337
R++ +G IP + + V C GK +EL ++ +G+ L++ C
Sbjct: 408 FREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCD 467
Query: 338 NRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSS-SS 396
N +++KA+ + K++K + +L + Y++++ G+ ++++A +F + + V +
Sbjct: 468 NGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVT 527
Query: 397 FVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDEATYKQVI 436
+ +++ LC L +A +M + G PD+ TY +I
Sbjct: 528 YNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILI 567
Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 88/388 (22%), Positives = 172/388 (44%), Gaps = 31/388 (7%)
Query: 69 LYGAMVRDGVSPNKFTWSLVAQILCRSGKFEVVLGL-----LDSGIYSSVMYNLVIDFYS 123
L+ +M++ P ++ + + R+ ++++VLG L+ + ++I+ Y
Sbjct: 57 LFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMTIMINCYC 116
Query: 124 KKGDFGAAFDRLNEMCNGRNLTPGFS----TYSSILDG----ARRYEKTEVSDRIVGLMV 175
+K AF L GR G+ T+S++++G R E + DR MV
Sbjct: 117 RKKKLLFAFSVL-----GRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDR----MV 167
Query: 176 EKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGR 235
E K P L +I L G+ A ++ R + + + T G +L L K G
Sbjct: 168 EMKQRPD--LVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGN 225
Query: 236 VKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSR 295
A+ ++ + ER I Y ++ LCK+ ++ L ++ +G + S
Sbjct: 226 SALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSS 285
Query: 296 FVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLK 355
+ C GKW + ++L ++ + ++ D S+L++ + ++ +A L+ ++
Sbjct: 286 LIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRG 345
Query: 356 GSLDVATYDVLLDGLFKDGRMEEAVRIFDYMK----ELKVVSSSSFVIVVSRLCHLKELR 411
+ D TY+ L+DG K+ + EA ++FD M E +V+ S I+++ C K +
Sbjct: 346 IAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYS---ILINSYCKAKRVD 402
Query: 412 KAMKNHDEMLKMGHKPDEATYKQVISGF 439
M+ E+ G P+ TY ++ GF
Sbjct: 403 DGMRLFREISSKGLIPNTITYNTLVLGF 430
Score = 73.2 bits (178), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 71/369 (19%), Positives = 164/369 (44%), Gaps = 9/369 (2%)
Query: 16 SLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVR 75
S+V+D G F D L ++ M + G V ++L+ L + + + M+
Sbjct: 249 SIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIG 308
Query: 76 DGVSPNKFTWSLVAQILCRSGKF----EVVLGLLDSGIYS-SVMYNLVIDFYSKKGDFGA 130
+ P+ T+S + + + GK E+ ++ GI ++ YN +ID + K+
Sbjct: 309 RNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHE 368
Query: 131 AFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDY 190
A +++ ++ + P TYS +++ + ++ + R+ + K L+P + ++ N
Sbjct: 369 A-NQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIP-NTITYNTL 426
Query: 191 VIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERG 250
V+ GK AA+ +F+ + T G +L L G + +A++I+ + +
Sbjct: 427 VLG-FCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSR 485
Query: 251 ITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVE 310
+T+ Y ++ +C + ++ L + ++G P + + + C KG E +
Sbjct: 486 MTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEAD 545
Query: 311 ELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGL 370
L + + G D F + L+ + + ++ L +++ S D +T +++D +
Sbjct: 546 MLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIEEMKVCGFSADSSTIKMVID-M 604
Query: 371 FKDGRMEEA 379
D R++++
Sbjct: 605 LSDRRLDKS 613
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 83/185 (44%), Gaps = 3/185 (1%)
Query: 258 YYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVL 317
+ VN C E + E L+ +VE P + +S + C KG+ E L+ ++
Sbjct: 143 FSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMV 202
Query: 318 DKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRME 377
+ G D ++ C + A+ L K+E+ V Y +++D L KDG +
Sbjct: 203 EYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFD 262
Query: 378 EAVRIFDYMKELKVVSSS--SFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDEATYKQV 435
+A+ +F+ M E+K + + ++ ++ LC+ + K EM+ PD T+ +
Sbjct: 263 DALSLFNEM-EMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSAL 321
Query: 436 ISGFM 440
I F+
Sbjct: 322 IDVFV 326
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/241 (19%), Positives = 88/241 (36%), Gaps = 36/241 (14%)
Query: 235 RVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELS 294
+V +AI ++ + + D+ + + + Q + V G + + G ++
Sbjct: 50 KVNDAIDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMT 109
Query: 295 RFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKL 354
+ C K K +L G D+ S+L+ +C ++ +A+AL ++ ++
Sbjct: 110 IMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEM 169
Query: 355 KGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKV----------------------- 391
K D+ T L++GL GR+ EA+ + D M E
Sbjct: 170 KQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALA 229
Query: 392 -------------VSSSSFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDEATYKQVISG 438
S + IV+ LC A+ +EM G K D TY +I G
Sbjct: 230 LDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGG 289
Query: 439 F 439
Sbjct: 290 L 290
>sp|Q9C8T7|PP101_ARATH Pentatricopeptide repeat-containing protein At1g63330
OS=Arabidopsis thaliana GN=At1g63330 PE=2 SV=2
Length = 559
Score = 113 bits (283), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 96/434 (22%), Positives = 188/434 (43%), Gaps = 11/434 (2%)
Query: 14 ALSLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAM 73
LS +L+ Y H D + + M G+ P L+ L+ N+ A L M
Sbjct: 82 TLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRM 141
Query: 74 VRDGVSPNKFTWSLVAQILCRSGKFEVVLGLLDSGIYSS-----VMYNLVIDFYSKKGDF 128
V+ G PN T+ +V LC+ G ++ LL+ + V++N +ID K
Sbjct: 142 VQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHV 201
Query: 129 GAAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGN 188
A + EM + + P TYSS++ Y + + +++ M+EKK+ P L
Sbjct: 202 DDALNLFKEM-ETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPN--LVTF 258
Query: 189 DYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISE 248
+ +I GK AE + I+ T ++ R+ +A Q++ +
Sbjct: 259 NALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVS 318
Query: 249 RGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKE 308
+ Y + CK + E+ L R++ RG + + + + G
Sbjct: 319 KDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDN 378
Query: 309 VEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLD 368
+++ ++ G+ D S L++ C+N +++KA+ + ++K + LD+ Y +++
Sbjct: 379 AQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIE 438
Query: 369 GLFKDGRMEEAVRIFDYMKELKVVSSS--SFVIVVSRLCHLKELRKAMKNHDEMLKMGHK 426
G+ K G++++ +F + LK V + ++ ++S LC + L++A +M + G
Sbjct: 439 GMCKAGKVDDGWDLFCSL-SLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPL 497
Query: 427 PDEATYKQVISGFM 440
PD TY +I +
Sbjct: 498 PDSGTYNTLIRAHL 511
Score = 102 bits (254), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 89/430 (20%), Positives = 187/430 (43%), Gaps = 9/430 (2%)
Query: 16 SLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVR 75
+++++C+ + L + M G+ P++ ++LL+ I A L MV
Sbjct: 49 NILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVE 108
Query: 76 DGVSPNKFTWSLVAQILCRSGKFEVVLGLLDSGIYSS-----VMYNLVIDFYSKKGDFGA 130
G P+ T++ + L K + L+D + V Y +V++ K+GD
Sbjct: 109 MGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDL 168
Query: 131 AFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDY 190
AF+ LN+M + +++I+D +Y + + + M K + P +
Sbjct: 169 AFNLLNKM-EAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSS-- 225
Query: 191 VIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERG 250
+I L G+ A + ++KI T ++ A KEG+ EA +++ + +R
Sbjct: 226 LISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRS 285
Query: 251 ITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVE 310
I Y + +N C + ++ + +V + P + + C + ++
Sbjct: 286 IDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGT 345
Query: 311 ELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGL 370
EL + +GL+ D+ ++L++ + D A + ++ D+ TY +LLDGL
Sbjct: 346 ELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGL 405
Query: 371 FKDGRMEEAVRIFDYMKELKV-VSSSSFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDE 429
+G++E+A+ +FDYM++ ++ + + ++ +C ++ + G KP+
Sbjct: 406 CNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNV 465
Query: 430 ATYKQVISGF 439
TY +ISG
Sbjct: 466 VTYNTMISGL 475
Score = 101 bits (252), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 91/405 (22%), Positives = 179/405 (44%), Gaps = 15/405 (3%)
Query: 44 VPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSGKFEVVLG 103
+P++ N LL A+ + + L L M R G+S N +T++++ CR + + L
Sbjct: 7 LPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALA 66
Query: 104 LLDSGIY-----SSVMYNLVIDFY---SKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSIL 155
LL + S V + +++ Y + D A D++ EM P T+++++
Sbjct: 67 LLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEM----GYRPDTITFTTLI 122
Query: 156 DGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEK 215
G + K + +V MV++ P G V+ L G A + + K
Sbjct: 123 HGLFLHNKASEAVALVDRMVQRGCQPNLVTYG--VVVNGLCKRGDIDLAFNLLNKMEAAK 180
Query: 216 IELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVC 275
IE ++ +L K V +A+ ++ + +GI Y + ++ LC + +
Sbjct: 181 IEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDAS 240
Query: 276 GLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYY 335
LL D++E+ P + + + + +GK+ E E+L ++ + + D F +SL+ +
Sbjct: 241 QLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGF 300
Query: 336 CSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSS 395
C + ++DKA + + D+ TY+ L+ G K R+E+ +F M +V +
Sbjct: 301 CMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDT 360
Query: 396 -SFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDEATYKQVISGF 439
++ ++ L H + A K +M+ G PD TY ++ G
Sbjct: 361 VTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGL 405
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 85/191 (44%), Gaps = 12/191 (6%)
Query: 30 DGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVA 89
DG E++R M G V L+ L+ + A ++ MV DGV P+ T+S++
Sbjct: 343 DGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILL 402
Query: 90 QILCRSGKFEVVLGLLDSGIYSSV-----MYNLVIDFYSKKGDFGAAFDRLNEMCNGRNL 144
LC +GK E L + D S + +Y +I+ K G +D + + + +
Sbjct: 403 DGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSL-SLKGV 461
Query: 145 TPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSG--NDYVIQKLSDMGKTY 202
P TY++++ G + + ++ M E LP SG N + L D K
Sbjct: 462 KPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPD---SGTYNTLIRAHLRDGDKAA 518
Query: 203 AAEMIFK-RAC 212
+AE+I + R+C
Sbjct: 519 SAELIREMRSC 529
>sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590
OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1
Length = 634
Score = 113 bits (283), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 96/434 (22%), Positives = 190/434 (43%), Gaps = 11/434 (2%)
Query: 14 ALSLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAM 73
LS +L+ Y H D + + M G+ P L+ L+ N+ A L M
Sbjct: 157 TLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRM 216
Query: 74 VRDGVSPNKFTWSLVAQILCRSGKFEVVLGLLDSGIYSS-----VMYNLVIDFYSKKGDF 128
V+ G PN T+ +V LC+ G ++ L LL+ + V++N +ID K
Sbjct: 217 VQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHV 276
Query: 129 GAAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGN 188
A + EM + + P TYSS++ Y + + +++ M+EKK+ P L
Sbjct: 277 DDALNLFKEM-ETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPN--LVTF 333
Query: 189 DYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISE 248
+ +I GK AE ++ I+ T ++ R+ +A Q++ +
Sbjct: 334 NALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVS 393
Query: 249 RGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKE 308
+ Y + CK + E+ L R++ RG + + + + G
Sbjct: 394 KDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDN 453
Query: 309 VEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLD 368
+++ ++ G+ D S L++ C+N +++KA+ + ++K + LD+ Y +++
Sbjct: 454 AQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIE 513
Query: 369 GLFKDGRMEEAVRIFDYMKELKVVSSS--SFVIVVSRLCHLKELRKAMKNHDEMLKMGHK 426
G+ K G++++ +F + LK V + ++ ++S LC + L++A +M + G
Sbjct: 514 GMCKAGKVDDGWDLFCSL-SLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPL 572
Query: 427 PDEATYKQVISGFM 440
P+ TY +I +
Sbjct: 573 PNSGTYNTLIRAHL 586
Score = 103 bits (258), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 90/430 (20%), Positives = 187/430 (43%), Gaps = 9/430 (2%)
Query: 16 SLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVR 75
+++++C+ + L + M G+ P++ ++LL+ I A L MV
Sbjct: 124 NILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVE 183
Query: 76 DGVSPNKFTWSLVAQILCRSGKFEVVLGLLDSGIYSS-----VMYNLVIDFYSKKGDFGA 130
G P+ T++ + L K + L+D + V Y +V++ K+GD
Sbjct: 184 MGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDL 243
Query: 131 AFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDY 190
A + LN+M + +++I+D +Y + + + M K + P +
Sbjct: 244 ALNLLNKM-EAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSS-- 300
Query: 191 VIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERG 250
+I L G+ A + ++KI T ++ A KEG+ EA ++Y + +R
Sbjct: 301 LISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRS 360
Query: 251 ITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVE 310
I Y + VN C + ++ + +V + P + + + C + ++
Sbjct: 361 IDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGT 420
Query: 311 ELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGL 370
EL + +GL+ D+ ++L++ + D A + ++ D+ TY +LLDGL
Sbjct: 421 ELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGL 480
Query: 371 FKDGRMEEAVRIFDYMKELKV-VSSSSFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDE 429
+G++E+A+ +FDYM++ ++ + + ++ +C ++ + G KP+
Sbjct: 481 CNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNV 540
Query: 430 ATYKQVISGF 439
TY +ISG
Sbjct: 541 VTYNTMISGL 550
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 87/415 (20%), Positives = 167/415 (40%), Gaps = 50/415 (12%)
Query: 69 LYGAMVRDGVSPNKFTWSLVAQILCRSGKFEVVLGL--------LDSGIYSSVMYNLVID 120
L+G MV+ P+ ++ + + + KF+VV+ L + G+Y+ YN++I+
Sbjct: 72 LFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYT---YNILIN 128
Query: 121 FYSKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLL 180
+ ++ A L +M P T SS+L+G ++ + +V MVE
Sbjct: 129 CFCRRSQISLALALLGKMMK-LGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYR 187
Query: 181 PKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAI 240
P +I L K A + R + T G ++ L K G A+
Sbjct: 188 PDTITFTT--LIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLAL 245
Query: 241 QIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQ 300
+ + + I + ++ LCK ++ L +++ +G P + S ++
Sbjct: 246 NLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCL 305
Query: 301 CGKGKWKEVEELLSAVLDKGL---------LLDS-------------------------- 325
C G+W + +LLS +++K + L+D+
Sbjct: 306 CSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDI 365
Query: 326 FCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDY 385
F +SL+ +C + ++DKA + + DV TY+ L+ G K R+E+ +F
Sbjct: 366 FTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFRE 425
Query: 386 MKELKVVSSS-SFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDEATYKQVISGF 439
M +V + ++ ++ L H + A K +M+ G PD TY ++ G
Sbjct: 426 MSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGL 480
>sp|O04504|PPR27_ARATH Pentatricopeptide repeat-containing protein At1g09820
OS=Arabidopsis thaliana GN=At1g09820 PE=2 SV=1
Length = 606
Score = 113 bits (282), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 103/444 (23%), Positives = 203/444 (45%), Gaps = 14/444 (3%)
Query: 2 IQSCEGRDSQSDALSLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQN 61
I C+ S +++ Y++ F G E ++ YG+ + +C L+ AL ++N
Sbjct: 143 ISMCDNVCVNSIIADMLVLAYANNSRFELGFEAFKRSGYYGYKLSALSCKPLMIALLKEN 202
Query: 62 EIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSGKFEVVLGLL-DSGIY----SSVMYN 116
+Y M+R + PN FT+++V LC++GK ++ D +Y + V YN
Sbjct: 203 RSADVEYVYKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYN 262
Query: 117 LVIDFYSKKGDFGAAFDR---LNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGL 173
+ID Y K G G + L EM +++P +T++ ++DG + + S ++
Sbjct: 263 TLIDGYCKLGGNGKMYKADAVLKEMVE-NDVSPNLTTFNILIDGFWKDDNLPGSMKVFKE 321
Query: 174 MVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKE 233
M+++ + P + +S N +I L + GK A + + ++ T ++ K
Sbjct: 322 MLDQDVKP-NVISYNS-LINGLCNGGKISEAISMRDKMVSAGVQPNLITYNALINGFCKN 379
Query: 234 GRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMEL 293
+KEA+ ++ + +G Y ++ CK + ++ L ++ G +P
Sbjct: 380 DMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTY 439
Query: 294 SRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEK 353
+ +A C G + ++L + KG L D LME YC + KA L ++ K
Sbjct: 440 NCLIAGLCRNGNIEAAKKLFDQLTSKG-LPDLVTFHILMEGYCRKGESRKAAMLLKEMSK 498
Query: 354 LKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYM-KELKV-VSSSSFVIVVSRLCHLKELR 411
+ TY++++ G K+G ++ A + M KE ++ ++ +S+ +++ +L
Sbjct: 499 MGLKPRHLTYNIVMKGYCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQGYSQKGKLE 558
Query: 412 KAMKNHDEMLKMGHKPDEATYKQV 435
A +EML+ G P+ TY+ V
Sbjct: 559 DANMLLNEMLEKGLVPNRITYEIV 582
>sp|Q9ASZ8|PPR37_ARATH Pentatricopeptide repeat-containing protein At1g12620
OS=Arabidopsis thaliana GN=At1g12620 PE=2 SV=1
Length = 621
Score = 113 bits (282), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 100/441 (22%), Positives = 197/441 (44%), Gaps = 11/441 (2%)
Query: 7 GRDSQSDALSLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLA 66
G + + S +++ +G + LE+ M G P + NAL++ L ++ A
Sbjct: 137 GYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDA 196
Query: 67 SCLYGAMVRDGVSPNKFTWSLVAQILCRSGKFEVVLGLL----DSGI-YSSVMYNLVIDF 121
L MV G PN+ T+ V +++C+SG+ + + LL + I +V Y+++ID
Sbjct: 197 VLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDG 256
Query: 122 YSKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLP 181
K G AF+ NEM + Y++++ G + + +++ M+++K+ P
Sbjct: 257 LCKDGSLDNAFNLFNEM-EIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITP 315
Query: 182 KHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQ 241
+ +I GK AE + K I T ++ KE ++ +A
Sbjct: 316 D--VVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANH 373
Query: 242 IYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQC 301
+ L+ +G + +N CK + ++ L R + RG + + + + C
Sbjct: 374 MLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFC 433
Query: 302 GKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVA 361
GK + +EL ++ + + D L++ C N + +KA+ + KIEK K LD+
Sbjct: 434 ELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIG 493
Query: 362 TYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSS--SSFVIVVSRLCHLKELRKAMKNHDE 419
Y++++ G+ ++++A +F + LK V ++ I++ LC L +A +
Sbjct: 494 IYNIIIHGMCNASKVDDAWDLFCSL-PLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRK 552
Query: 420 MLKMGHKPDEATYKQVISGFM 440
M + GH P+ TY +I +
Sbjct: 553 MEEDGHSPNGCTYNILIRAHL 573
Score = 98.6 bits (244), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 87/410 (21%), Positives = 182/410 (44%), Gaps = 36/410 (8%)
Query: 32 LEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQI 91
L++ + M + G + + +++ R ++ LA G +++ G P+ T+S +
Sbjct: 92 LDLCKQMELKGIAHNLYTLSIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLING 151
Query: 92 LCRSGKFEVVLGLLDSGIYSSVMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFSTY 151
LC G+ L L+ DR+ EM + P T
Sbjct: 152 LCLEGRVSEALELV---------------------------DRMVEMGH----KPTLITL 180
Query: 152 SSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRA 211
+++++G K + ++ MVE P G V++ + G+T A + ++
Sbjct: 181 NALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGP--VLKVMCKSGQTALAMELLRKM 238
Query: 212 CDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQP 271
+ KI+L ++ L K+G + A +++ + +G Y + C +
Sbjct: 239 EERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRW 298
Query: 272 EEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSL 331
++ LLRD+++R P + S + +GK +E EEL ++ +G+ D+ +SL
Sbjct: 299 DDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSL 358
Query: 332 MEYYCSNRQIDKAI-ALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELK 390
++ +C Q+DKA L + + K G ++ T+++L++G K +++ + +F M
Sbjct: 359 IDGFCKENQLDKANHMLDLMVSKGCGP-NIRTFNILINGYCKANLIDDGLELFRKMSLRG 417
Query: 391 VVSSS-SFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDEATYKQVISGF 439
VV+ + ++ ++ C L +L A + EM+ +PD +YK ++ G
Sbjct: 418 VVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGL 467
Score = 86.3 bits (212), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 80/381 (20%), Positives = 168/381 (44%), Gaps = 17/381 (4%)
Query: 69 LYGAMVRDGVSPNKFTWSLVAQILCRSGKFEVVLGLLDSGIYSSVMYNL-----VIDFYS 123
L+ M R P +S + ++ R+ ++++VL L + +NL +I+
Sbjct: 59 LFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIMINCCC 118
Query: 124 KKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDG----ARRYEKTEVSDRIVGLMVEKKL 179
+ AF + ++ P T+S++++G R E E+ DR+V + + L
Sbjct: 119 RCRKLSLAFSAMGKIIK-LGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTL 177
Query: 180 LPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEA 239
+ + L + L GK A ++ R + + + T G +LK + K G+ A
Sbjct: 178 ITLNAL------VNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALA 231
Query: 240 IQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVAS 299
+++ + ER I + Y ++ LCK+ + L ++ +G+ + + +
Sbjct: 232 MELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRG 291
Query: 300 QCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLD 359
C G+W + +LL ++ + + D S+L++ + ++ +A LH ++ + S D
Sbjct: 292 FCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPD 351
Query: 360 VATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSS-SSFVIVVSRLCHLKELRKAMKNHD 418
TY L+DG K+ ++++A + D M + +F I+++ C + ++
Sbjct: 352 TVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFR 411
Query: 419 EMLKMGHKPDEATYKQVISGF 439
+M G D TY +I GF
Sbjct: 412 KMSLRGVVADTVTYNTLIQGF 432
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 72/362 (19%), Positives = 156/362 (43%), Gaps = 42/362 (11%)
Query: 21 CYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSP 80
CY+ G + DG ++ R M P V A +AL+D ++ ++R A L+ M++ G+SP
Sbjct: 293 CYA--GRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISP 350
Query: 81 NKFTWSLVAQILCRSGKFEVVLGLLDSGIYSSVMYNLVIDFYSKKGDFGAAFDRLNEMCN 140
+ T++ + C+ + LD N ++D KG C
Sbjct: 351 DTVTYTSLIDGFCKENQ-------LDKA-------NHMLDLMVSKG------------CG 384
Query: 141 GRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGN---DYVIQKLSD 197
P T++ +++G Y K + D GL + +K+ + ++ + +IQ +
Sbjct: 385 -----PNIRTFNILING---YCKANLIDD--GLELFRKMSLRGVVADTVTYNTLIQGFCE 434
Query: 198 MGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSD 257
+GK A+ +F+ ++ + +L L G ++A++I+ I + + +
Sbjct: 435 LGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGI 494
Query: 258 YYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVL 317
Y ++ +C + ++ L + +G P + + C KG E + L +
Sbjct: 495 YNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKME 554
Query: 318 DKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRME 377
+ G + + L+ + K+ L +I++ S+D +T +++D + DGR++
Sbjct: 555 EDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKRCGFSVDASTVKMVVD-MLSDGRLK 613
Query: 378 EA 379
++
Sbjct: 614 KS 615
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 72/374 (19%), Positives = 159/374 (42%), Gaps = 24/374 (6%)
Query: 53 LLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSGKFEVVLGLLDSGIYSS 112
++D L + + A L+ M G + ++ + + C +G+++ LL I
Sbjct: 253 IIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRK 312
Query: 113 VMYNLV-----IDFYSKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVS 167
+ ++V ID + K+G A + EM R ++P TY+S++DG + + + +
Sbjct: 313 ITPDVVAFSALIDCFVKEGKLREAEELHKEMIQ-RGISPDTVTYTSLIDGFCKENQLDKA 371
Query: 168 DRIVGLMVEKKLLP--KHF-LSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCG 224
+ ++ LMV K P + F + N Y L D G +M + + + T
Sbjct: 372 NHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTV-----TYN 426
Query: 225 CMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVER 284
+++ + G+++ A +++ + R + Y ++ LC +PE+ + + +
Sbjct: 427 TLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKS 486
Query: 285 GYIPCAMEL-----SRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNR 339
MEL + + C K + +L ++ KG+ D + ++ C
Sbjct: 487 -----KMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKG 541
Query: 340 QIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVI 399
+ +A L K+E+ S + TY++L+ +G ++ ++ + +K +S V
Sbjct: 542 SLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKRCGFSVDASTVK 601
Query: 400 VVSRLCHLKELRKA 413
+V + L+K+
Sbjct: 602 MVVDMLSDGRLKKS 615
>sp|Q940A6|PP325_ARATH Pentatricopeptide repeat-containing protein At4g19440,
chloroplastic OS=Arabidopsis thaliana GN=At4g19440 PE=2
SV=2
Length = 838
Score = 112 bits (281), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 94/414 (22%), Positives = 186/414 (44%), Gaps = 10/414 (2%)
Query: 31 GLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQ 90
L+V+ ++ G P+ + CN LL +L R NE + C +V GVSP+ + ++
Sbjct: 223 ALDVFPVLANKGMFPSKTTCNILLTSLVRANEFQ-KCCEAFDVVCKGVSPDVYLFTTAIN 281
Query: 91 ILCRSGKFEVVLGLL----DSGIYSSVM-YNLVIDFYSKKGDFGAAFDRLNEMCNGRNLT 145
C+ GK E + L ++G+ +V+ +N VID G + AF +M R +
Sbjct: 282 AFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVE-RGME 340
Query: 146 PGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAE 205
P TYS ++ G R ++ + ++ M +K P + N +I + G A
Sbjct: 341 PTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNN--LIDSFIEAGSLNKAI 398
Query: 206 MIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVL 265
I + + L T ++K K G+ A ++ + G V + + + +L
Sbjct: 399 EIKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLL 458
Query: 266 CKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDS 325
C + + +++ R P L+ ++ C GK + EL L+KG ++D+
Sbjct: 459 CSHLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDT 518
Query: 326 FCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDY 385
++L+ C ++D+A + +I +D +Y+ L+ G +++EA D
Sbjct: 519 RTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDE 578
Query: 386 MKELKVVSSS-SFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDEATYKQVISG 438
M + + + ++ I++ L ++ ++ +A++ D+ + G PD TY +I G
Sbjct: 579 MVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDG 632
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 99/514 (19%), Positives = 197/514 (38%), Gaps = 85/514 (16%)
Query: 5 CEGRDSQSDALSLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIR 64
C+G + ++ + G + ++++ M G P V N ++D L
Sbjct: 266 CKGVSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYD 325
Query: 65 LASCLYGAMVRDGVSPNKFTWSLVAQILCRSGK----FEVVLGLLDSGIYSSVM-YNLVI 119
A MV G+ P T+S++ + L R+ + + V+ + G +V+ YN +I
Sbjct: 326 EAFMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLI 385
Query: 120 DFYSKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSIL---------DGARRYEKTEVSD-- 168
D + + G A + + ++ + L+ STY++++ D A R K +S
Sbjct: 386 DSFIEAGSLNKAIE-IKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGF 444
Query: 169 ------------------------RIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAA 204
R VG M+ + + P L +I L GK A
Sbjct: 445 NVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLTT--LISGLCKHGKHSKA 502
Query: 205 EMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNV 264
++ + ++ + T +L L + G++ EA +I I RG + Y ++
Sbjct: 503 LELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISG 562
Query: 265 LCKEHQPEE-----------------------VCGLLR------------DVVERGYIPC 289
C + + +E +CGL D G +P
Sbjct: 563 CCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPD 622
Query: 290 AMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHI 349
S + C + +E +E ++ K + ++ + L+ YC + ++ A+ L
Sbjct: 623 VYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELRE 682
Query: 350 KIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMK----ELKVVSSSSFVIVVSRLC 405
++ S + ATY L+ G+ R+EEA +F+ M+ E V ++ + +L
Sbjct: 683 DMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLG 742
Query: 406 HLKELRKAMKNHDEMLKMGHKPDEATYKQVISGF 439
+ ++ ++ EM P++ TY +I G+
Sbjct: 743 QMVKVECLLR---EMHSKNVHPNKITYTVMIGGY 773
Score = 52.4 bits (124), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 76/375 (20%), Positives = 147/375 (39%), Gaps = 19/375 (5%)
Query: 71 GAMVRDGVSPNKFTWSLVAQILCRSGK----FEVVLGLLDSG-IYSSVMYNLVIDFYSKK 125
G M+ +SP + + LC+ GK E+ L+ G + + N ++ +
Sbjct: 472 GEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEA 531
Query: 126 GDFGAAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFL 185
G AF R+ + GR +Y++++ G +K + + + MV++ L P ++
Sbjct: 532 GKLDEAF-RIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYT 590
Query: 186 SGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDD-TCGCMLKALSKEGRVKEAIQIYH 244
+I L +M K A + F C L D T M+ K R +E + +
Sbjct: 591 Y--SILICGLFNMNKVEEA-IQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFD 647
Query: 245 LISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKG 304
+ + + Y + C+ + L D+ +G P + + +
Sbjct: 648 EMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIIS 707
Query: 305 KWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYD 364
+ +E + L + +GL + F ++L++ Y Q+ K L ++ + TY
Sbjct: 708 RVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYT 767
Query: 365 VLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLKELRKAMKNHDEMLKMG 424
V++ G +DG + EA R+ + M+E +V S KE +L+
Sbjct: 768 VMIGGYARDGNVTEASRLLNEMREKGIVPDS---------ITYKEFIYGYLKQGGVLEAF 818
Query: 425 HKPDEATYKQVISGF 439
DE Y +I G+
Sbjct: 819 KGSDEENYAAIIEGW 833
Score = 36.6 bits (83), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 54/132 (40%), Gaps = 16/132 (12%)
Query: 34 VYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILC 93
++ MR+ G P V AL+D + ++ CL M V PNK T++++
Sbjct: 715 LFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYA 774
Query: 94 RSGKFEVVLGLLDS----GIYS-SVMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGF 148
R G LL+ GI S+ Y I Y K+G AF +E
Sbjct: 775 RDGNVTEASRLLNEMREKGIVPDSITYKEFIYGYLKQGGVLEAFKGSDE----------- 823
Query: 149 STYSSILDGARR 160
Y++I++G +
Sbjct: 824 ENYAAIIEGWNK 835
>sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930,
chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2
SV=2
Length = 629
Score = 112 bits (281), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 100/432 (23%), Positives = 188/432 (43%), Gaps = 15/432 (3%)
Query: 14 ALSLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAM 73
LS +L+ Y H + + + M V + P N L+ L+ N+ A L M
Sbjct: 152 TLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRM 211
Query: 74 VRDGVSPNKFTWSLVAQILCRSGKFEVVLGLL---DSGIYSS--VMYNLVIDFYSKKGDF 128
V G P+ FT+ V LC+ G ++ L LL + G + V+Y +ID +
Sbjct: 212 VARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNV 271
Query: 129 GAAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGN 188
A + EM N + + P TY+S++ Y + + R++ M+E+K+ P +
Sbjct: 272 NDALNLFTEMDN-KGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPN--VVTF 328
Query: 189 DYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISE 248
+I GK AE ++ I+ T ++ R+ EA ++ L+
Sbjct: 329 SALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMIS 388
Query: 249 RGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKE 308
+ Y + CK + EE L R++ +RG + + + + G
Sbjct: 389 KDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDM 448
Query: 309 VEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLD 368
+++ ++ G+ D S L++ C +++KA+ + ++K K D+ TY+++++
Sbjct: 449 AQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIE 508
Query: 369 GLFKDGRMEEAVRIFDYMKELKVVSSSS--FVIVVSRLCH--LKELRKAMKNHDEMLKMG 424
G+ K G++E+ +F + LK V + + ++S C LKE A+ EM + G
Sbjct: 509 GMCKAGKVEDGWDLFCSL-SLKGVKPNVIIYTTMISGFCRKGLKEEADAL--FREMKEDG 565
Query: 425 HKPDEATYKQVI 436
P+ TY +I
Sbjct: 566 TLPNSGTYNTLI 577
Score = 88.2 bits (217), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 94/460 (20%), Positives = 185/460 (40%), Gaps = 64/460 (13%)
Query: 30 DGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVA 89
D ++++ M +P++ N LL A+ + N+ L L M +S + ++++++
Sbjct: 63 DAVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILI 122
Query: 90 QILCRSGKFEVVLGLLDSGIYSSVMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLT---- 145
CR + + L +L G + Y + D LN C+G+ ++
Sbjct: 123 NCFCRRSQLPLALAVL--GKMMKLGY---------EPDIVTLSSLLNGYCHGKRISEAVA 171
Query: 146 -----------PGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQK 194
P T+++++ G + K + ++ MV + P F G V+
Sbjct: 172 LVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGT--VVNG 229
Query: 195 LSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVR 254
L G A + K+ KIE ++ AL V +A+ ++ + +GI
Sbjct: 230 LCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPN 289
Query: 255 DSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLS 314
Y + + LC + + LL D++ER P + S + + +GK E E+L
Sbjct: 290 VVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYD 349
Query: 315 AVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDG 374
++ + + D F SSL+ +C + ++D+A + + +V TY+ L+ G K
Sbjct: 350 EMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAK 409
Query: 375 RMEEAVRIFDYMKELKVVSSS------------------------------------SFV 398
R+EE + +F M + +V ++ ++
Sbjct: 410 RVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYS 469
Query: 399 IVVSRLCHLKELRKAMKNHDEMLKMGHKPDEATYKQVISG 438
I++ LC +L KA+ + + K +PD TY +I G
Sbjct: 470 ILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEG 509
Score = 68.6 bits (166), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 64/313 (20%), Positives = 133/313 (42%), Gaps = 8/313 (2%)
Query: 18 VLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDG 77
++ C + G + D + M P V +AL+DA ++ ++ A LY M++
Sbjct: 296 LIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRS 355
Query: 78 VSPNKFTWSLVAQILCRSGKFEVVLGLLDSGIY-----SSVMYNLVIDFYSKKGDFGAAF 132
+ P+ FT+S + C + + + + I + V YN +I + K
Sbjct: 356 IDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGM 415
Query: 133 DRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVI 192
+ EM R L TY++++ G + +++ +I MV + P + ++
Sbjct: 416 ELFREMSQ-RGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPD--IITYSILL 472
Query: 193 QKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGIT 252
L GK A ++F+ K+E T M++ + K G+V++ ++ +S +G+
Sbjct: 473 DGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVK 532
Query: 253 VRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEEL 312
Y ++ C++ EE L R++ E G +P + + + ++ G EL
Sbjct: 533 PNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAEL 592
Query: 313 LSAVLDKGLLLDS 325
+ + G + D+
Sbjct: 593 IKEMRSCGFVGDA 605
Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/219 (21%), Positives = 92/219 (42%), Gaps = 1/219 (0%)
Query: 222 TCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDV 281
T +L R+ EA+ + + + ++ L ++ E L+ +
Sbjct: 152 TLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRM 211
Query: 282 VERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQI 341
V RG P V C +G LL + + D +++++ C+ + +
Sbjct: 212 VARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNV 271
Query: 342 DKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSS-SFVIV 400
+ A+ L +++ +V TY+ L+ L GR +A R+ M E K+ + +F +
Sbjct: 272 NDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSAL 331
Query: 401 VSRLCHLKELRKAMKNHDEMLKMGHKPDEATYKQVISGF 439
+ +L +A K +DEM+K PD TY +I+GF
Sbjct: 332 IDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGF 370
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/253 (20%), Positives = 107/253 (42%), Gaps = 7/253 (2%)
Query: 185 LSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYH 244
LS N + KL D + EM+ R +E +L A++K + I +
Sbjct: 51 LSRNVLLDLKLDDAVDLFG-EMVQSRPLPSIVEFNK-----LLSAIAKMNKFDLVISLGE 104
Query: 245 LISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKG 304
+ I+ Y +N C+ Q +L +++ GY P + LS + C
Sbjct: 105 RMQNLRISYDLYSYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGK 164
Query: 305 KWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYD 364
+ E L+ + ++ ++L+ + + +A+AL ++ D+ TY
Sbjct: 165 RISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYG 224
Query: 365 VLLDGLFKDGRMEEAVRIFDYMKELKVVSSSS-FVIVVSRLCHLKELRKAMKNHDEMLKM 423
+++GL K G ++ A+ + M++ K+ + + ++ LC+ K + A+ EM
Sbjct: 225 TVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNK 284
Query: 424 GHKPDEATYKQVI 436
G +P+ TY +I
Sbjct: 285 GIRPNVVTYNSLI 297
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 81/169 (47%), Gaps = 1/169 (0%)
Query: 272 EEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSL 331
++ L ++V+ +P +E ++ +++ K+ V L + + + D + + L
Sbjct: 62 DDAVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNIL 121
Query: 332 MEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKV 391
+ +C Q+ A+A+ K+ KL D+ T LL+G R+ EAV + D M ++
Sbjct: 122 INCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEY 181
Query: 392 VSSS-SFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDEATYKQVISGF 439
++ +F ++ L + +A+ D M+ G +PD TY V++G
Sbjct: 182 QPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGL 230
Score = 35.4 bits (80), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 20/101 (19%), Positives = 54/101 (53%), Gaps = 1/101 (0%)
Query: 340 QIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSS-SSFV 398
++D A+ L ++ + + + ++ LL + K + + + + + M+ L++ S+
Sbjct: 60 KLDDAVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYN 119
Query: 399 IVVSRLCHLKELRKAMKNHDEMLKMGHKPDEATYKQVISGF 439
I+++ C +L A+ +M+K+G++PD T +++G+
Sbjct: 120 ILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGY 160
>sp|Q9CAN5|PPR98_ARATH Pentatricopeptide repeat-containing protein At1g63080,
mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2
SV=1
Length = 614
Score = 112 bits (280), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 94/430 (21%), Positives = 192/430 (44%), Gaps = 9/430 (2%)
Query: 16 SLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVR 75
+++++C + L + M G+ P++ N+LL+ N I A L MV
Sbjct: 104 NIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVE 163
Query: 76 DGVSPNKFTWSLVAQILCRSGKFEVVLGLLDSGIYSS-----VMYNLVIDFYSKKGDFGA 130
G P+ T++ + L + K + L++ + V Y VI+ K+G+
Sbjct: 164 MGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDL 223
Query: 131 AFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDY 190
A + LN+M G+ + YS+++D +Y + + + M K + P F +
Sbjct: 224 ALNLLNKMEKGK-IEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSS-- 280
Query: 191 VIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERG 250
+I L + G+ A + + KI T ++ A +KEG++ EA +++ + +R
Sbjct: 281 LISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRS 340
Query: 251 ITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVE 310
I Y + +N C + +E + +V + +P + + + C K +
Sbjct: 341 IDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGM 400
Query: 311 ELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGL 370
EL + +GL+ ++ ++L+ + D A + ++ ++ TY+ LLDGL
Sbjct: 401 ELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGL 460
Query: 371 FKDGRMEEAVRIFDYMKELKVVSS-SSFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDE 429
K+G++E+A+ +F+Y+++ K+ ++ I+ +C ++ + G KPD
Sbjct: 461 CKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDV 520
Query: 430 ATYKQVISGF 439
Y +ISGF
Sbjct: 521 IAYNTMISGF 530
Score = 92.8 bits (229), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 98/440 (22%), Positives = 178/440 (40%), Gaps = 44/440 (10%)
Query: 14 ALSLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAM 73
L+ +L+ + H + + + M G+ P L+ L++ N+ A L M
Sbjct: 137 TLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERM 196
Query: 74 VRDGVSPNKFTWSLVAQILCRSGKFEVVLGLLDS---GIYSS--VMYNLVIDFYSKKGDF 128
V G P+ T+ V LC+ G+ ++ L LL+ G + V+Y+ VID K
Sbjct: 197 VVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHV 256
Query: 129 GAAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGN 188
A + EM N + + P TYSS++ Y + + R++ M+E+K+ P + ++ N
Sbjct: 257 DDALNLFTEMDN-KGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINP-NVVTFN 314
Query: 189 DYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISE 248
+I + GK AE +F I+ T ++ R+ EA QI+ L+
Sbjct: 315 S-LIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVS 373
Query: 249 RGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKE 308
+ Y +N CK + + L RD+ RG + + + +
Sbjct: 374 KDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDN 433
Query: 309 VEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEK--------------- 353
+ + ++ G+ + ++L++ C N +++KA+ + ++K
Sbjct: 434 AQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSE 493
Query: 354 -------------------LKG-SLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVS 393
LKG DV Y+ ++ G K G EEA +F MKE +
Sbjct: 494 GMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLP 553
Query: 394 SSSFVIVVSRLCHLKELRKA 413
S + R HL++ KA
Sbjct: 554 DSGTYNTLIR-AHLRDGDKA 572
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 81/401 (20%), Positives = 171/401 (42%), Gaps = 9/401 (2%)
Query: 45 PAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSGKFEVVLGL 104
P++ + LL A+ + + L M GVS N +T++++ LCR + L +
Sbjct: 63 PSIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYNIMINCLCRRSQLSFALAI 122
Query: 105 LDSGIY-----SSVMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDGAR 159
L + S V N +++ + A +++M P T+++++ G
Sbjct: 123 LGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVE-MGYQPDTVTFTTLVHGLF 181
Query: 160 RYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQ 219
++ K + +V MV K P G VI L G+ A + + KIE
Sbjct: 182 QHNKASEAVALVERMVVKGCQPDLVTYGA--VINGLCKRGEPDLALNLLNKMEKGKIEAD 239
Query: 220 DDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLR 279
++ +L K V +A+ ++ + +GI Y + ++ LC + + LL
Sbjct: 240 VVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLS 299
Query: 280 DVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNR 339
D++ER P + + + + +GK E E+L ++ + + + +SL+ +C +
Sbjct: 300 DMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHD 359
Query: 340 QIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSS-SFV 398
++D+A + + DV TY+ L++G K ++ + + +F M +V ++ ++
Sbjct: 360 RLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYT 419
Query: 399 IVVSRLCHLKELRKAMKNHDEMLKMGHKPDEATYKQVISGF 439
++ + A +M+ G P+ TY ++ G
Sbjct: 420 TLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGL 460
Score = 79.3 bits (194), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 76/377 (20%), Positives = 162/377 (42%), Gaps = 9/377 (2%)
Query: 69 LYGAMVRDGVSPNKFTWSLVAQILCRSGKFEVVLGLLDS----GIYSSV-MYNLVIDFYS 123
L+G MV+ P+ +S + + + KF++V+ + G+ ++ YN++I+
Sbjct: 52 LFGEMVKSRPFPSIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYNIMINCLC 111
Query: 124 KKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKH 183
++ A L +M P T +S+L+G + + +V MVE P
Sbjct: 112 RRSQLSFALAILGKMMK-LGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDT 170
Query: 184 FLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIY 243
++ L K A + +R + + T G ++ L K G A+ +
Sbjct: 171 VTFTT--LVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLL 228
Query: 244 HLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGK 303
+ + + I Y ++ LCK ++ L ++ +G P S ++ C
Sbjct: 229 NKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNY 288
Query: 304 GKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATY 363
G+W + LLS +L++ + + +SL++ + ++ +A L ++ + ++ TY
Sbjct: 289 GRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTY 348
Query: 364 DVLLDGLFKDGRMEEAVRIFDYMKELKVVSS-SSFVIVVSRLCHLKELRKAMKNHDEMLK 422
+ L++G R++EA +IF M + ++ +++ C K++ M+ +M +
Sbjct: 349 NSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSR 408
Query: 423 MGHKPDEATYKQVISGF 439
G + TY +I GF
Sbjct: 409 RGLVGNTVTYTTLIHGF 425
Score = 79.3 bits (194), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 81/369 (21%), Positives = 166/369 (44%), Gaps = 44/369 (11%)
Query: 51 NALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSGKFE----VVLGLLD 106
+ ++D+L + + A L+ M G+ P+ FT+S + LC G++ ++ +L+
Sbjct: 244 STVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLE 303
Query: 107 SGIYSSVM-YNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTE 165
I +V+ +N +ID ++K+G A +EM R++ P TY+S+++G +++ +
Sbjct: 304 RKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQ-RSIDPNIVTYNSLINGFCMHDRLD 362
Query: 166 VSDRIVGLMVEKKLLP---------KHFLSGNDYV--IQKLSDMGK--------TYA--- 203
+ +I LMV K LP F V ++ DM + TY
Sbjct: 363 EAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLI 422
Query: 204 -----------AEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGIT 252
A+M+FK+ + + T +L L K G++++A+ ++ + + +
Sbjct: 423 HGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKME 482
Query: 253 VRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEEL 312
Y +CK + E+ L + +G P + + ++ C KG +E L
Sbjct: 483 PDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTL 542
Query: 313 LSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHI--KIEKLKGSLDVATYDVLLDGL 370
+ + G L DS ++L+ + R DKA + + ++ + + D +TY ++ D +
Sbjct: 543 FIKMKEDGPLPDSGTYNTLIRAHL--RDGDKAASAELIKEMRSCRFAGDASTYGLVTD-M 599
Query: 371 FKDGRMEEA 379
DGR+++
Sbjct: 600 LHDGRLDKG 608
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 89/195 (45%), Gaps = 18/195 (9%)
Query: 29 MDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLV 88
+DG+E++R M G V L+ ++ ++ A ++ MV DGV PN T++ +
Sbjct: 397 VDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTL 456
Query: 89 AQILCRSGKFEVVLGL--------LDSGIYSSVMYNLVIDFYSKKGDFGAAFDRLNEMCN 140
LC++GK E + + ++ IY+ YN++ + K G +D + +
Sbjct: 457 LDGLCKNGKLEKAMVVFEYLQKSKMEPDIYT---YNIMSEGMCKAGKVEDGWDLFCSL-S 512
Query: 141 GRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSG--NDYVIQKLSDM 198
+ + P Y++++ G + E + + M E LP SG N + L D
Sbjct: 513 LKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPD---SGTYNTLIRAHLRDG 569
Query: 199 GKTYAAEMIFK-RAC 212
K +AE+I + R+C
Sbjct: 570 DKAASAELIKEMRSC 584
>sp|P0C7Q7|PPR38_ARATH Putative pentatricopeptide repeat-containing protein At1g12700,
mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3
SV=1
Length = 602
Score = 111 bits (278), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 91/401 (22%), Positives = 184/401 (45%), Gaps = 9/401 (2%)
Query: 42 GFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSGKFEVV 101
G+ P + N L+ L+ + ++ A L MV +G P+ T++ + +CRSG +
Sbjct: 153 GYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLA 212
Query: 102 LGLL----DSGIYSSVM-YNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILD 156
L LL + + + V Y+ +ID + G AA EM + + TY+S++
Sbjct: 213 LDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEM-ETKGIKSSVVTYNSLVR 271
Query: 157 GARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKI 216
G + K ++ MV ++++P + ++ N ++ GK A ++K I
Sbjct: 272 GLCKAGKWNDGALLLKDMVSREIVP-NVITFN-VLLDVFVKEGKLQEANELYKEMITRGI 329
Query: 217 ELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCG 276
T ++ + R+ EA + L+ + + + + C + ++
Sbjct: 330 SPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMK 389
Query: 277 LLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYC 336
+ R++ +RG + A+ S V C GK K EEL ++ G+L D L++ C
Sbjct: 390 VFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLC 449
Query: 337 SNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSS- 395
N +++KA+ + ++K K L + Y +++G+ K G++E+A +F + V +
Sbjct: 450 DNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVM 509
Query: 396 SFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDEATYKQVI 436
++ +++S LC L +A +M + G+ P++ TY +I
Sbjct: 510 TYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLI 550
Score = 84.7 bits (208), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 77/380 (20%), Positives = 175/380 (46%), Gaps = 9/380 (2%)
Query: 66 ASCLYGAMVRDGVSPNKFTWSLVAQILCRSGKFEVVLGL-----LDSGIYSSVMYNLVID 120
A L+ M+R P+ +S + R+ +F +VL L+ ++ N++I+
Sbjct: 72 AIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMIN 131
Query: 121 FYSKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLL 180
+ + A+ L ++ P +T+++++ G K + +V MVE
Sbjct: 132 CFCRCCKTCFAYSVLGKVMK-LGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQ 190
Query: 181 PKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAI 240
P + + ++ + G T A + ++ + ++ T ++ +L ++G + AI
Sbjct: 191 PD--VVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAI 248
Query: 241 QIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQ 300
++ + +GI Y + V LCK + + LL+D+V R +P + + +
Sbjct: 249 SLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVF 308
Query: 301 CGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDV 360
+GK +E EL ++ +G+ + ++LM+ YC ++ +A + + + K S D+
Sbjct: 309 VKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDI 368
Query: 361 ATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSS-SFVIVVSRLCHLKELRKAMKNHDE 419
T+ L+ G R+++ +++F + + +V+++ ++ I+V C +++ A + E
Sbjct: 369 VTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQE 428
Query: 420 MLKMGHKPDEATYKQVISGF 439
M+ G PD TY ++ G
Sbjct: 429 MVSHGVLPDVMTYGILLDGL 448
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 96/440 (21%), Positives = 187/440 (42%), Gaps = 60/440 (13%)
Query: 25 KGLFMDG------LEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGV 78
KGLF++G + V RM+ G P V N++++ + R + LA L M V
Sbjct: 166 KGLFLEGKVSEAVVLVDRMVE-NGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNV 224
Query: 79 SPNKFTWSLVAQILCRSGKFEVVLGLL----DSGIYSSVM-YNLVIDFYSKKGDFGAAFD 133
+ FT+S + LCR G + + L GI SSV+ YN ++ K G +
Sbjct: 225 KADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGAL 284
Query: 134 RLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGND---- 189
L +M + R + P T++ +LD + K + ++ + M+ + + P + ++ N
Sbjct: 285 LLKDMVS-REIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISP-NIITYNTLMDG 342
Query: 190 YVIQ-KLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISE 248
Y +Q +LS+ +++ + C I T ++K RV + ++++ IS+
Sbjct: 343 YCMQNRLSEANNML--DLMVRNKCSPDIV----TFTSLIKGYCMVKRVDDGMKVFRNISK 396
Query: 249 RGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKE 308
RG+ Y V C+ + + L +++V G +P M + C GK ++
Sbjct: 397 RGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEK 456
Query: 309 V----EELLSAVLDKGLLL------------------DSFCC-------SSLMEY----- 334
E+L + +D G+++ + FC ++M Y
Sbjct: 457 ALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMIS 516
Query: 335 -YCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVS 393
C + +A L K+E+ + + TY+ L+ +DG + + ++ + MK +
Sbjct: 517 GLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSA 576
Query: 394 SSSFVIVVSRLCHLKELRKA 413
+S + +V + EL K+
Sbjct: 577 DASSIKMVIDMLLSGELDKS 596
Score = 70.5 bits (171), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/327 (19%), Positives = 142/327 (43%), Gaps = 10/327 (3%)
Query: 1 MIQSCEGRDSQSDAL--SLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALY 58
+++ E R+ ++D S ++D G + +++ M G +V N+L+ L
Sbjct: 215 LLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLC 274
Query: 59 RQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSGKF----EVVLGLLDSGIYSSVM 114
+ + + L MV + PN T++++ + + GK E+ ++ GI +++
Sbjct: 275 KAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNII 334
Query: 115 -YNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGL 173
YN ++D Y + A + L+ M + +P T++S++ G ++ + ++
Sbjct: 335 TYNTLMDGYCMQNRLSEANNMLDLMVRNK-CSPDIVTFTSLIKGYCMVKRVDDGMKVFRN 393
Query: 174 MVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKE 233
+ ++ L+ ++Q GK AE +F+ + T G +L L
Sbjct: 394 ISKRGLVANAVTYS--ILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDN 451
Query: 234 GRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMEL 293
G++++A++I+ + + + + Y + +CK + E+ L + +G P M
Sbjct: 452 GKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTY 511
Query: 294 SRFVASQCGKGKWKEVEELLSAVLDKG 320
+ ++ C KG E LL + + G
Sbjct: 512 TVMISGLCKKGSLSEANILLRKMEEDG 538
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 81/171 (47%), Gaps = 7/171 (4%)
Query: 270 QPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCS 329
+ ++ L ++++ +P ++ SRF ++ ++ V + + G+ + + +
Sbjct: 68 KKDDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLN 127
Query: 330 SLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKE- 388
++ +C + A ++ K+ KL D T++ L+ GLF +G++ EAV + D M E
Sbjct: 128 IMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVEN 187
Query: 389 ---LKVVSSSSFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDEATYKQVI 436
VV+ +S +V+ +C + A+ +M + K D TY +I
Sbjct: 188 GCQPDVVTYNS---IVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTII 235
>sp|Q8S8P6|PP180_ARATH Pentatricopeptide repeat-containing protein At2g32630
OS=Arabidopsis thaliana GN=At2g32630 PE=3 SV=1
Length = 624
Score = 111 bits (277), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 94/380 (24%), Positives = 177/380 (46%), Gaps = 10/380 (2%)
Query: 14 ALSLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAM 73
+L++V++ +G ++ + V G P N +++A +Q + + M
Sbjct: 226 SLTIVVEGLCRRGEVEKSKKLIKEFSVKGIKPEAYTYNTIINAYVKQRDFSGVEGVLKVM 285
Query: 74 VRDGVSPNKFTWSLVAQILCRSGKFEVVLGLLDS----GIYSSV-MYNLVIDFYSKKGDF 128
+DGV NK T++L+ ++ ++GK L D GI S V +Y +I + +KG+
Sbjct: 286 KKDGVVYNKVTYTLLMELSVKNGKMSDAEKLFDEMRERGIESDVHVYTSLISWNCRKGNM 345
Query: 129 GAAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGN 188
AF +E+ + L+P TY +++DG + + ++ ++ M K + +
Sbjct: 346 KRAFLLFDELTE-KGLSPSSYTYGALIDGVCKVGEMGAAEILMNEMQSKGVNITQVVF-- 402
Query: 189 DYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISE 248
+ +I G A MI+ + + TC + ++ R EA Q + E
Sbjct: 403 NTLIDGYCRKGMVDEASMIYDVMEQKGFQADVFTCNTIASCFNRLKRYDEAKQWLFRMME 462
Query: 249 RGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKE 308
G+ + Y ++V CKE EE L ++ +G P A+ + + + C +GK KE
Sbjct: 463 GGVKLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSKGVQPNAITYNVMIYAYCKQGKIKE 522
Query: 309 VEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKG-SLDVATYDVLL 367
+L + + G+ DS+ +SL+ C +D+A+ L ++ LKG + TY V++
Sbjct: 523 ARKLRANMEANGMDPDSYTYTSLIHGECIADNVDEAMRLFSEM-GLKGLDQNSVTYTVMI 581
Query: 368 DGLFKDGRMEEAVRIFDYMK 387
GL K G+ +EA ++D MK
Sbjct: 582 SGLSKAGKSDEAFGLYDEMK 601
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/234 (21%), Positives = 104/234 (44%), Gaps = 1/234 (0%)
Query: 207 IFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLC 266
IF+R D +++ + +++ L + G V+++ ++ S +GI Y +N
Sbjct: 211 IFRRMVDSGVKITVYSLTIVVEGLCRRGEVEKSKKLIKEFSVKGIKPEAYTYNTIINAYV 270
Query: 267 KEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSF 326
K+ V G+L+ + + G + + + + GK + E+L + ++G+ D
Sbjct: 271 KQRDFSGVEGVLKVMKKDGVVYNKVTYTLLMELSVKNGKMSDAEKLFDEMRERGIESDVH 330
Query: 327 CCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYM 386
+SL+ + C + +A L ++ + S TY L+DG+ K G M A + + M
Sbjct: 331 VYTSLISWNCRKGNMKRAFLLFDELTEKGLSPSSYTYGALIDGVCKVGEMGAAEILMNEM 390
Query: 387 KELKV-VSSSSFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDEATYKQVISGF 439
+ V ++ F ++ C + +A +D M + G + D T + S F
Sbjct: 391 QSKGVNITQVVFNTLIDGYCRKGMVDEASMIYDVMEQKGFQADVFTCNTIASCF 444
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/253 (20%), Positives = 107/253 (42%), Gaps = 3/253 (1%)
Query: 189 DYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISE 248
D V + D G +F + + + + +C L A K R+ ++I+ + +
Sbjct: 158 DLVFRVYVDNGMFEEGLRVFDYMVKKGLSIDERSCIVFLVAAKKRRRIDLCLEIFRRMVD 217
Query: 249 RGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKE 308
G+ + V LC+ + E+ L+++ +G P A + + + + +
Sbjct: 218 SGVKITVYSLTIVVEGLCRRGEVEKSKKLIKEFSVKGIKPEAYTYNTIINAYVKQRDFSG 277
Query: 309 VEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLD 368
VE +L + G++ + + LME N ++ A L ++ + DV Y L+
Sbjct: 278 VEGVLKVMKKDGVVYNKVTYTLLMELSVKNGKMSDAEKLFDEMRERGIESDVHVYTSLIS 337
Query: 369 GLFKDGRMEEAVRIFDYMKELKVVSSSSFV--IVVSRLCHLKELRKAMKNHDEMLKMGHK 426
+ G M+ A +FD + E K +S SS+ ++ +C + E+ A +EM G
Sbjct: 338 WNCRKGNMKRAFLLFDELTE-KGLSPSSYTYGALIDGVCKVGEMGAAEILMNEMQSKGVN 396
Query: 427 PDEATYKQVISGF 439
+ + +I G+
Sbjct: 397 ITQVVFNTLIDGY 409
Score = 32.7 bits (73), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 69/156 (44%), Gaps = 7/156 (4%)
Query: 292 ELSRFVASQCGKGKWKE-VEELLSAVLDKGLLLDSFCCSS-----LMEYYCSNRQIDKAI 345
E+ + S G +K VEEL SA++D + + F + Y N ++ +
Sbjct: 115 EMRSLLNSVVNDGFYKRPVEELGSAMVDCDISEEKFEFFEKFFDLVFRVYVDNGMFEEGL 174
Query: 346 ALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKV-VSSSSFVIVVSRL 404
+ + K S+D + V L K R++ + IF M + V ++ S IVV L
Sbjct: 175 RVFDYMVKKGLSIDERSCIVFLVAAKKRRRIDLCLEIFRRMVDSGVKITVYSLTIVVEGL 234
Query: 405 CHLKELRKAMKNHDEMLKMGHKPDEATYKQVISGFM 440
C E+ K+ K E G KP+ TY +I+ ++
Sbjct: 235 CRRGEVEKSKKLIKEFSVKGIKPEAYTYNTIINAYV 270
>sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670,
mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2
SV=1
Length = 741
Score = 110 bits (275), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 95/409 (23%), Positives = 181/409 (44%), Gaps = 46/409 (11%)
Query: 37 MMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSG 96
+M + G+ P V + + +++ R E+ L M R G+ PN + + + +LCR
Sbjct: 271 LMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRIC 330
Query: 97 KF----EVVLGLLDSGIYS-SVMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFSTY 151
K E ++ GI +V+Y +ID + K+GD AA EM + R++TP TY
Sbjct: 331 KLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEM-HSRDITPDVLTY 389
Query: 152 SSILDGARRYEKTEVSDRIVGLMVEK-KLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKR 210
++I+ G + +G MVE KL + F G
Sbjct: 390 TAIISGFCQ----------IGDMVEAGKLFHEMFCKG----------------------- 416
Query: 211 ACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQ 270
+E T ++ K G +K+A ++++ + + G + Y ++ LCKE
Sbjct: 417 -----LEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGD 471
Query: 271 PEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSS 330
+ LL ++ + G P + V C G +E +L+ GL D+ ++
Sbjct: 472 LDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTT 531
Query: 331 LMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELK 390
LM+ YC + ++DKA + ++ + T++VL++G G +E+ ++ ++M
Sbjct: 532 LMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKG 591
Query: 391 VV-SSSSFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDEATYKQVISG 438
+ ++++F +V + C L+ A + +M G PD TY+ ++ G
Sbjct: 592 IAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKG 640
Score = 88.6 bits (218), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 91/422 (21%), Positives = 178/422 (42%), Gaps = 12/422 (2%)
Query: 26 GLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQ-NEIRLASCLYGAMVRDGVSPNKFT 84
GL + V+ M YG V +V +CN L L + + A ++ GV N +
Sbjct: 189 GLLREARRVFEKMLNYGLVLSVDSCNVYLTRLSKDCYKTATAIIVFREFPEVGVCWNVAS 248
Query: 85 WSLVAQILCRSGKFEV---VLGLLDSGIYSS--VMYNLVIDFYSKKGDFGAAFDRLNEMC 139
+++V +C+ G+ + +L L++ Y+ + Y+ V++ Y + G+ + +L E+
Sbjct: 249 YNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVW-KLIEVM 307
Query: 140 NGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMG 199
+ L P Y SI+ R K ++ M+ + +LP + +I G
Sbjct: 308 KRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTT--LIDGFCKRG 365
Query: 200 KTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYY 259
AA F I T ++ + G + EA +++H + +G+ +
Sbjct: 366 DIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFT 425
Query: 260 AFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDK 319
+N CK ++ + +++ G P + + + C +G ELL +
Sbjct: 426 ELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKI 485
Query: 320 GLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEA 379
GL + F +S++ C + I++A+ L + E + D TY L+D K G M++A
Sbjct: 486 GLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKA 545
Query: 380 VRIFDYM--KELKVVSSSSFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDEATYKQVIS 437
I M K L+ + +F ++++ C L K + ML G P+ T+ ++
Sbjct: 546 QEILKEMLGKGLQ-PTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVK 604
Query: 438 GF 439
+
Sbjct: 605 QY 606
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/306 (23%), Positives = 137/306 (44%), Gaps = 9/306 (2%)
Query: 5 CEGRDSQSDALSLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIR 64
C+G + S + +++ Y G D V+ M G P V L+D L ++ ++
Sbjct: 414 CKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLD 473
Query: 65 LASCLYGAMVRDGVSPNKFTWSLVAQILCRSGKFEVVLGLLD----SGIYS-SVMYNLVI 119
A+ L M + G+ PN FT++ + LC+SG E + L+ +G+ + +V Y ++
Sbjct: 474 SANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLM 533
Query: 120 DFYSKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKL 179
D Y K G+ A + L EM G+ L P T++ +++G + E ++++ M+ K +
Sbjct: 534 DAYCKSGEMDKAQEILKEML-GKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGI 592
Query: 180 LPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEA 239
P + + ++++ AA I+K C + T ++K K +KEA
Sbjct: 593 APNA--TTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEA 650
Query: 240 IQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVAS 299
++ + +G +V S Y + K + E + D + R + E+ F +
Sbjct: 651 WFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVF-DQMRREGLAADKEIFDFFSD 709
Query: 300 QCGKGK 305
KGK
Sbjct: 710 TKYKGK 715
Score = 80.1 bits (196), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 115/253 (45%), Gaps = 2/253 (0%)
Query: 189 DYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEG-RVKEAIQIYHLIS 247
D Q L D G A +F++ + + L D+C L LSK+ + AI ++
Sbjct: 179 DVFFQVLVDFGLLREARRVFEKMLNYGLVLSVDSCNVYLTRLSKDCYKTATAIIVFREFP 238
Query: 248 ERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWK 307
E G+ + Y ++ +C+ + +E LL + +GY P + S V C G+
Sbjct: 239 EVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELD 298
Query: 308 EVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLL 367
+V +L+ + KGL +S+ S++ C ++ +A ++ + D Y L+
Sbjct: 299 KVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLI 358
Query: 368 DGLFKDGRMEEAVRIFDYMKELKVVSSS-SFVIVVSRLCHLKELRKAMKNHDEMLKMGHK 426
DG K G + A + F M + ++ ++S C + ++ +A K EM G +
Sbjct: 359 DGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLE 418
Query: 427 PDEATYKQVISGF 439
PD T+ ++I+G+
Sbjct: 419 PDSVTFTELINGY 431
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 75/381 (19%), Positives = 144/381 (37%), Gaps = 51/381 (13%)
Query: 16 SLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVR 75
+ ++D + +G + + M P V A++ + ++ A L+ M
Sbjct: 355 TTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFC 414
Query: 76 DGVSPNKFTWSLVAQILCRSGK----FEVVLGLLDSGIYSSVM-YNLVIDFYSKKGDFGA 130
G+ P+ T++ + C++G F V ++ +G +V+ Y +ID K+GD +
Sbjct: 415 KGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDS 474
Query: 131 AFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDY 190
A + L+EM L P TY+SI++G + E + ++VG L + +
Sbjct: 475 ANELLHEMWK-IGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGL------NADTV 527
Query: 191 VIQKLSDM----GKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLI 246
L D G+ A+ I K + ++ T ++ G +++ ++ + +
Sbjct: 528 TYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWM 587
Query: 247 SERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKW 306
+GI + + + V C + + + +D+ RG P V C
Sbjct: 588 LAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNM 647
Query: 307 KEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVL 366
KE L + KG S+ V+TY VL
Sbjct: 648 KEAWFLFQEMKGKGF-----------------------------------SVSVSTYSVL 672
Query: 367 LDGLFKDGRMEEAVRIFDYMK 387
+ G K + EA +FD M+
Sbjct: 673 IKGFLKRKKFLEAREVFDQMR 693
>sp|Q9FFE3|PP388_ARATH Pentatricopeptide repeat-containing protein At5g16420,
mitochondrial OS=Arabidopsis thaliana GN=At5g16420 PE=2
SV=1
Length = 535
Score = 109 bits (273), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 100/429 (23%), Positives = 188/429 (43%), Gaps = 47/429 (10%)
Query: 18 VLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLY-GAMVRD 76
+L Y G + + ++ + +G +V + N LL+ L + L ++ +
Sbjct: 126 LLRNYGLAGRYESSMRIFLRIPDFGVKRSVRSLNTLLNVLIQNQRFDLVHAMFKNSKESF 185
Query: 77 GVSPNKFTWSLVAQILCRSGKFEVVLGLLDS----GIYSS-VMYNLVIDFYSKKGDFGAA 131
G++PN FT +L+ + LC+ E +LD G+ + V Y ++ Y +GD +A
Sbjct: 186 GITPNIFTCNLLVKALCKKNDIESAYKVLDEIPSMGLVPNLVTYTTILGGYVARGDMESA 245
Query: 132 FDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYV 191
L EM + R P +TY+ ++DG
Sbjct: 246 KRVLEEMLD-RGWYPDATTYTVLMDG---------------------------------- 270
Query: 192 IQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGI 251
+G+ A + +IE + T G M++AL KE + EA ++ + ER
Sbjct: 271 ---YCKLGRFSEAATVMDDMEKNEIEPNEVTYGVMIRALCKEKKSGEARNMFDEMLERSF 327
Query: 252 TVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEE 311
S ++ LC++H+ +E CGL R +++ +P LS + C +G+ E +
Sbjct: 328 MPDSSLCCKVIDALCEDHKVDEACGLWRKMLKNNCMPDNALLSTLIHWLCKEGRVTEARK 387
Query: 312 LLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLF 371
L +KG + ++L+ C ++ +A L + + K + TY+VL++GL
Sbjct: 388 LFDE-FEKGSIPSLLTYNTLIAGMCEKGELTEAGRLWDDMYERKCKPNAFTYNVLIEGLS 446
Query: 372 KDGRMEEAVRIFDYMKELKVVSS-SSFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDEA 430
K+G ++E VR+ + M E+ + ++F+I+ L L + AMK M M K D+
Sbjct: 447 KNGNVKEGVRVLEEMLEIGCFPNKTTFLILFEGLQKLGKEEDAMK-IVSMAVMNGKVDKE 505
Query: 431 TYKQVISGF 439
+++ + F
Sbjct: 506 SWELFLKKF 514
Score = 65.9 bits (159), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 73/300 (24%), Positives = 125/300 (41%), Gaps = 12/300 (4%)
Query: 146 PGFS----TYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKT 201
PGF+ TY SIL + + D + LM + + G + I L + G
Sbjct: 77 PGFTHNYDTYHSIL---FKLSRARAFDPVESLMADLRNSYPPIKCGENLFIDLLRNYGLA 133
Query: 202 --YAAEM-IFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISER-GITVRDSD 257
Y + M IF R D ++ + +L L + R ++ E GIT
Sbjct: 134 GRYESSMRIFLRIPDFGVKRSVRSLNTLLNVLIQNQRFDLVHAMFKNSKESFGITPNIFT 193
Query: 258 YYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVL 317
V LCK++ E +L ++ G +P + + + +G + + +L +L
Sbjct: 194 CNLLVKALCKKNDIESAYKVLDEIPSMGLVPNLVTYTTILGGYVARGDMESAKRVLEEML 253
Query: 318 DKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRME 377
D+G D+ + LM+ YC + +A + +EK + + TY V++ L K+ +
Sbjct: 254 DRGWYPDATTYTVLMDGYCKLGRFSEAATVMDDMEKNEIEPNEVTYGVMIRALCKEKKSG 313
Query: 378 EAVRIFDYMKELKVVSSSSFVI-VVSRLCHLKELRKAMKNHDEMLKMGHKPDEATYKQVI 436
EA +FD M E + SS V+ LC ++ +A +MLK PD A +I
Sbjct: 314 EARNMFDEMLERSFMPDSSLCCKVIDALCEDHKVDEACGLWRKMLKNNCMPDNALLSTLI 373
Score = 37.0 bits (84), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 53/112 (47%), Gaps = 2/112 (1%)
Query: 331 LMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELK 390
L+ Y + + ++ + ++I V + + LL+ L ++ R + +F KE
Sbjct: 126 LLRNYGLAGRYESSMRIFLRIPDFGVKRSVRSLNTLLNVLIQNQRFDLVHAMFKNSKESF 185
Query: 391 VVSSSSFV--IVVSRLCHLKELRKAMKNHDEMLKMGHKPDEATYKQVISGFM 440
++ + F ++V LC ++ A K DE+ MG P+ TY ++ G++
Sbjct: 186 GITPNIFTCNLLVKALCKKNDIESAYKVLDEIPSMGLVPNLVTYTTILGGYV 237
Score = 36.2 bits (82), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 61/316 (19%), Positives = 118/316 (37%), Gaps = 31/316 (9%)
Query: 16 SLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVR 75
+ +L Y +G V M G+ P + L+D + A+ + M +
Sbjct: 230 TTILGGYVARGDMESAKRVLEEMLDRGWYPDATTYTVLMDGYCKLGRFSEAATVMDDMEK 289
Query: 76 DGVSPNKFTWSLVAQILCRSGKFEVVLGLLDSGIYSSVMYN-----LVIDFYSKKGDFGA 130
+ + PN+ T+ ++ + LC+ K + D + S M + VID +
Sbjct: 290 NEIEPNEVTYGVMIRALCKEKKSGEARNMFDEMLERSFMPDSSLCCKVIDALCEDHKVDE 349
Query: 131 AFDRLNEMCNGRNLTPGFSTYSSILDG----ARRYEKTEVSDRIVGLMVEKKLLPKHFLS 186
A +M N P + S+++ R E ++ D EK +P L
Sbjct: 350 ACGLWRKMLKN-NCMPDNALLSTLIHWLCKEGRVTEARKLFDEF-----EKGSIPS--LL 401
Query: 187 GNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLI 246
+ +I + + G+ A ++ + K + T +++ LSK G VKE +++ +
Sbjct: 402 TYNTLIAGMCEKGELTEAGRLWDDMYERKCKPNAFTYNVLIEGLSKNGNVKEGVRVLEEM 461
Query: 247 SERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKW 306
E G + + L K + E+ ++ V G + K W
Sbjct: 462 LEIGCFPNKTTFLILFEGLQKLGKEEDAMKIVSMAVMNGKV--------------DKESW 507
Query: 307 KEVEELLSAVLDKGLL 322
+ + + LDKG+L
Sbjct: 508 ELFLKKFAGELDKGVL 523
>sp|Q9SR00|PP213_ARATH Pentatricopeptide repeat-containing protein At3g04760,
chloroplastic OS=Arabidopsis thaliana GN=At3g04760 PE=2
SV=1
Length = 602
Score = 109 bits (272), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 96/404 (23%), Positives = 190/404 (47%), Gaps = 17/404 (4%)
Query: 45 PAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSGKFEVVLGL 104
P V A NAL++ + N I A+ + M SP+ T++++ LC GK ++ L +
Sbjct: 156 PDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKV 215
Query: 105 L-----DSGIYSSVMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDGAR 159
L D+ + + Y ++I+ +G A ++EM + R L P TY++I+ G
Sbjct: 216 LNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLS-RGLKPDMFTYNTIIRGMC 274
Query: 160 RYEKTEVSDRIVGLM--VEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIE 217
K + DR ++ +E K +S N +++ L + GK E + + EK +
Sbjct: 275 ---KEGMVDRAFEMVRNLELKGCEPDVISYN-ILLRALLNQGKWEEGEKLMTKMFSEKCD 330
Query: 218 LQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGL 277
T ++ L ++G+++EA+ + L+ E+G+T Y + C+E + +
Sbjct: 331 PNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEF 390
Query: 278 LRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCS 337
L ++ G +P + + +A+ C GK + E+ + + G +S +++ S
Sbjct: 391 LETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWS 450
Query: 338 NRQIDKAIALHIKIEKLKGSLDV--ATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSS- 394
+ DK ALH+ +E + +D TY+ ++ L ++G ++EA + M+ + S
Sbjct: 451 SG--DKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSV 508
Query: 395 SSFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDEATYKQVISG 438
++ IV+ C + A+ + M+ G +P+E TY +I G
Sbjct: 509 VTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEG 552
Score = 62.4 bits (150), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 97/216 (44%), Gaps = 3/216 (1%)
Query: 226 MLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERG 285
++ K R+ +A ++ + + + Y + LC + + +L ++
Sbjct: 164 LINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDN 223
Query: 286 YIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAI 345
P + + + + +G E +L+ +L +GL D F ++++ C +D+A
Sbjct: 224 CQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAF 283
Query: 346 ALHIKIEKLKG-SLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKV-VSSSSFVIVVSR 403
+ +E LKG DV +Y++LL L G+ EE ++ M K + ++ I+++
Sbjct: 284 EMVRNLE-LKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITT 342
Query: 404 LCHLKELRKAMKNHDEMLKMGHKPDEATYKQVISGF 439
LC ++ +AM M + G PD +Y +I+ F
Sbjct: 343 LCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAF 378
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 70/272 (25%), Positives = 115/272 (42%), Gaps = 14/272 (5%)
Query: 25 KGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFT 84
+G+ E+ R + + G P V + N LL AL Q + L M + PN T
Sbjct: 276 EGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVT 335
Query: 85 WSLVAQILCRSGKFEVVLGLL----DSGIYS-SVMYNLVIDFYSKKGDFGAAFDRLNEMC 139
+S++ LCR GK E + LL + G+ + Y+ +I + ++G A + L M
Sbjct: 336 YSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMI 395
Query: 140 NGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMG 199
+ L P Y+++L + K + + I G + E P S + + L G
Sbjct: 396 SDGCL-PDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNS--SSYNTMFSALWSSG 452
Query: 200 -KTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDS-- 256
K A MI + + I+ + T M+ L +EG V EA ++ L+ R S
Sbjct: 453 DKIRALHMILEMMSN-GIDPDEITYNSMISCLCREGMVDEAFEL--LVDMRSCEFHPSVV 509
Query: 257 DYYAFVNVLCKEHQPEEVCGLLRDVVERGYIP 288
Y + CK H+ E+ +L +V G P
Sbjct: 510 TYNIVLLGFCKAHRIEDAINVLESMVGNGCRP 541
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 71/141 (50%), Gaps = 2/141 (1%)
Query: 301 CGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDV 360
C G + E LL ++ KG D C+ L++ + + R I KA+ + +EK G DV
Sbjct: 100 CRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEILEKF-GQPDV 158
Query: 361 ATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSS-SFVIVVSRLCHLKELRKAMKNHDE 419
Y+ L++G K R+++A R+ D M+ + ++ I++ LC +L A+K ++
Sbjct: 159 FAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQ 218
Query: 420 MLKMGHKPDEATYKQVISGFM 440
+L +P TY +I M
Sbjct: 219 LLSDNCQPTVITYTILIEATM 239
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 86/188 (45%), Gaps = 6/188 (3%)
Query: 254 RDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELL 313
RD+ + C+ E LL +V +GY P + ++ + G + + + +
Sbjct: 88 RDTQMLKIFHRSCRSGNYIESLHLLETMVRKGYNPDVILCTKLIK---GFFTLRNIPKAV 144
Query: 314 SA--VLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLF 371
+L+K D F ++L+ +C +ID A + ++ S D TY++++ L
Sbjct: 145 RVMEILEKFGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLC 204
Query: 372 KDGRMEEAVRIFDYMKELKVVSSS-SFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDEA 430
G+++ A+++ + + + ++ I++ + +A+K DEML G KPD
Sbjct: 205 SRGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMF 264
Query: 431 TYKQVISG 438
TY +I G
Sbjct: 265 TYNTIIRG 272
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 72/150 (48%), Gaps = 10/150 (6%)
Query: 31 GLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQ 90
LE++ + G P S+ N + AL+ + A + M+ +G+ P++ T++ +
Sbjct: 422 ALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMIS 481
Query: 91 ILCRSG----KFEVVLGLLDSGIYSSVM-YNLVIDFYSKKGDFGAAFDRLNEMCNGRNLT 145
LCR G FE+++ + + SV+ YN+V+ + K A + L M G
Sbjct: 482 CLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMV-GNGCR 540
Query: 146 PGFSTYSSILDG----ARRYEKTEVSDRIV 171
P +TY+ +++G R E E+++ +V
Sbjct: 541 PNETTYTVLIEGIGFAGYRAEAMELANDLV 570
Score = 38.9 bits (89), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 65/146 (44%), Gaps = 8/146 (5%)
Query: 16 SLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVR 75
S+++ G + + + ++M+ G P + + L+ A R+ + +A M+
Sbjct: 337 SILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMIS 396
Query: 76 DGVSPNKFTWSLVAQILCRSGK----FEVVLGLLDSGIY-SSVMYNLVIDFYSKKGDFGA 130
DG P+ ++ V LC++GK E+ L + G +S YN + GD
Sbjct: 397 DGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIR 456
Query: 131 AFDRLNE-MCNGRNLTPGFSTYSSIL 155
A + E M NG + P TY+S++
Sbjct: 457 ALHMILEMMSNG--IDPDEITYNSMI 480
Score = 32.7 bits (73), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 40/85 (47%)
Query: 6 EGRDSQSDALSLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRL 65
G D + ++ C +G+ + E+ MR F P+V N +L + + I
Sbjct: 467 NGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIED 526
Query: 66 ASCLYGAMVRDGVSPNKFTWSLVAQ 90
A + +MV +G PN+ T++++ +
Sbjct: 527 AINVLESMVGNGCRPNETTYTVLIE 551
>sp|O49436|PP327_ARATH Pentatricopeptide repeat-containing protein At4g20090
OS=Arabidopsis thaliana GN=EMB1025 PE=3 SV=1
Length = 660
Score = 107 bits (268), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 95/373 (25%), Positives = 178/373 (47%), Gaps = 14/373 (3%)
Query: 77 GVSPNKFTWSLVAQILCR----SGKFEVVLGLLDSG-IYSSVMYNLVIDFYSKKGDFGAA 131
+SPN +++LV + LC+ EV G+ + + Y ++D K+ A
Sbjct: 182 NISPNGLSFNLVIKALCKLRFVDRAIEVFRGMPERKCLPDGYTYCTLMDGLCKEERIDEA 241
Query: 132 FDRLNEMCNGRNLTPGFSTYSSILDG-ARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDY 190
L+EM +P Y+ ++DG ++ + T V+ ++V M K +P +
Sbjct: 242 VLLLDEM-QSEGCSPSPVIYNVLIDGLCKKGDLTRVT-KLVDNMFLKGCVPNEVTY--NT 297
Query: 191 VIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERG 250
+I L GK A + +R K D T G ++ L K+ R +A+++ + ERG
Sbjct: 298 LIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEERG 357
Query: 251 ITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVE 310
+ Y ++ L KE + EE L R + E+G P + S V C +GK E +
Sbjct: 358 YHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAK 417
Query: 311 ELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGL 370
E+L+ ++ G L +++ SSLM+ + ++A+ + +++K S + Y VL+DGL
Sbjct: 418 EILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDGL 477
Query: 371 FKDGRMEEAVRIFDYMKELKVVSSS-SFVIVVSRLCHLKELRKAMKNHDEML---KMGHK 426
GR++EA+ ++ M + + + ++ ++ LC + + A+K + EML + +
Sbjct: 478 CGVGRVKEAMMVWSKMLTIGIKPDTVAYSSIIKGLCGIGSMDAALKLYHEMLCQEEPKSQ 537
Query: 427 PDEATYKQVISGF 439
PD TY ++ G
Sbjct: 538 PDVVTYNILLDGL 550
Score = 96.3 bits (238), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 97/427 (22%), Positives = 185/427 (43%), Gaps = 16/427 (3%)
Query: 18 VLDCYSHKGLFMDGLEVYRMM----RVYGFVPAVSACNALLDALYRQNEIRLASCLYGAM 73
VL+ ++GL+ GLE Y + P + N ++ AL + + A ++ M
Sbjct: 154 VLNVIINEGLYHRGLEFYDYVVNSNMNMNISPNGLSFNLVIKALCKLRFVDRAIEVFRGM 213
Query: 74 VRDGVSPNKFTWSLVAQILCRSGKFEVVLGLLD-----SGIYSSVMYNLVIDFYSKKGDF 128
P+ +T+ + LC+ + + + LLD S V+YN++ID KKGD
Sbjct: 214 PERKCLPDGYTYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDL 273
Query: 129 GAAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGN 188
++ M + P TY++++ G K + + ++ MV K +P G
Sbjct: 274 TRVTKLVDNMF-LKGCVPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGT 332
Query: 189 DYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISE 248
+I L + A + + L ++ L KEG+ +EA+ ++ ++E
Sbjct: 333 --LINGLVKQRRATDAVRLLSSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAE 390
Query: 249 RGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKE 308
+G Y V+ LC+E +P E +L ++ G +P A S + G +E
Sbjct: 391 KGCKPNIVVYSVLVDGLCREGKPNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEE 450
Query: 309 VEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLD 368
++ + G + FC S L++ C ++ +A+ + K+ + D Y ++
Sbjct: 451 AVQVWKEMDKTGCSRNKFCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSIIK 510
Query: 369 GLFKDGRMEEAVRIFDYM---KELKVVSSS-SFVIVVSRLCHLKELRKAMKNHDEMLKMG 424
GL G M+ A++++ M +E K ++ I++ LC K++ +A+ + ML G
Sbjct: 511 GLCGIGSMDAALKLYHEMLCQEEPKSQPDVVTYNILLDGLCMQKDISRAVDLLNSMLDRG 570
Query: 425 HKPDEAT 431
PD T
Sbjct: 571 CDPDVIT 577
Score = 48.9 bits (115), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 67/132 (50%), Gaps = 3/132 (2%)
Query: 311 ELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGL 370
E+ + ++ L D + +LM+ C +ID+A+ L +++ S Y+VL+DGL
Sbjct: 208 EVFRGMPERKCLPDGYTYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGL 267
Query: 371 FKDGRMEEAVRIFDYMKELK--VVSSSSFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPD 428
K G + ++ D M LK V + ++ ++ LC +L KA+ + M+ P+
Sbjct: 268 CKKGDLTRVTKLVDNM-FLKGCVPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPN 326
Query: 429 EATYKQVISGFM 440
+ TY +I+G +
Sbjct: 327 DVTYGTLINGLV 338
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/282 (21%), Positives = 112/282 (39%), Gaps = 51/282 (18%)
Query: 51 NALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSGKFEVVLGLLDSGIY 110
+ L+ L+++ + A L+ M G PN +S++ LCR GK +L+ I
Sbjct: 366 SVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILNRMIA 425
Query: 111 SSVMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRI 170
S + P TYSS++ G + KT + +
Sbjct: 426 SGCL-------------------------------PNAYTYSSLMKG---FFKTGLCEEA 451
Query: 171 VGLMVEKKLLPKHFLSGNDY----VIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCM 226
V + E + K S N + +I L +G+ A M++ + I+ +
Sbjct: 452 VQVWKE---MDKTGCSRNKFCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSI 508
Query: 227 LKALSKEGRVKEAIQIYH--LISERGITVRD-SDYYAFVNVLCKEHQPEEVCGLLRDVVE 283
+K L G + A+++YH L E + D Y ++ LC + LL +++
Sbjct: 509 IKGLCGIGSMDAALKLYHEMLCQEEPKSQPDVVTYNILLDGLCMQKDISRAVDLLNSMLD 568
Query: 284 RGYIPCAMELSRFV------ASQCGKGKWKEVEELLSAVLDK 319
RG P + + F+ ++ C KG+ +EEL+ +L +
Sbjct: 569 RGCDPDVITCNTFLNTLSEKSNSCDKGR-SFLEELVVRLLKR 609
Score = 37.7 bits (86), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 66/149 (44%), Gaps = 7/149 (4%)
Query: 16 SLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVR 75
S+++D +G + E+ M G +P ++L+ ++ A ++ M +
Sbjct: 401 SVLVDGLCREGKPNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDK 460
Query: 76 DGVSPNKFTWSLVAQILCRSGKFE----VVLGLLDSGIYS-SVMYNLVIDFYSKKGDFGA 130
G S NKF +S++ LC G+ + V +L GI +V Y+ +I G A
Sbjct: 461 TGCSRNKFCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSIIKGLCGIGSMDA 520
Query: 131 AFDRLNEM-CNGRNLT-PGFSTYSSILDG 157
A +EM C + P TY+ +LDG
Sbjct: 521 ALKLYHEMLCQEEPKSQPDVVTYNILLDG 549
>sp|Q9M907|PP217_ARATH Pentatricopeptide repeat-containing protein At3g06920
OS=Arabidopsis thaliana GN=At3g06920 PE=2 SV=1
Length = 871
Score = 107 bits (267), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 111/465 (23%), Positives = 197/465 (42%), Gaps = 57/465 (12%)
Query: 22 YSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPN 81
Y G F + + R G +P+V A N +L L + ++ A ++ M +D +PN
Sbjct: 318 YGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEMKKDA-APN 376
Query: 82 KFTWSLVAQILCRSGKFEVVLGLLDS----GIYSSV-MYNLVIDFYSKKGDFGAAFDRLN 136
T++++ +LCR+GK + L DS G++ +V N+++D K A
Sbjct: 377 LSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFE 436
Query: 137 EMCNGRNLTPGFSTYSSILDGARR----------YEKTEVSDRIVGLMVEKKLLPKHFLS 186
EM + + TP T+ S++DG + YEK SD +V L+ F
Sbjct: 437 EM-DYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNFFNH 495
Query: 187 GNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKA----------------- 229
G + D K Y +MI + C ++L + CM KA
Sbjct: 496 G------RKEDGHKIYK-DMI-NQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKARR 547
Query: 230 --------------LSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVC 275
L K G E ++++ + E+G + Y ++ CK + +
Sbjct: 548 FVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAY 607
Query: 276 GLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYY 335
LL ++ +G+ P + + + E L K + L+ SSL++ +
Sbjct: 608 QLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGF 667
Query: 336 CSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSS 395
+ID+A + ++ + + ++ T++ LLD L K + EA+ F MKELK +
Sbjct: 668 GKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQ 727
Query: 396 -SFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDEATYKQVISGF 439
++ I+++ LC +++ KA EM K G KP +Y +ISG
Sbjct: 728 VTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGL 772
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 76/378 (20%), Positives = 161/378 (42%), Gaps = 9/378 (2%)
Query: 16 SLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVR 75
SL+ + ++H G DG ++Y+ M P + N +D +++ E ++ +
Sbjct: 487 SLIKNFFNH-GRKEDGHKIYKDMINQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKA 545
Query: 76 DGVSPNKFTWSLVAQILCRSG----KFEVVLGLLDSG-IYSSVMYNLVIDFYSKKGDFGA 130
P+ ++S++ L ++G +E+ + + G + + YN+VID + K G
Sbjct: 546 RRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNK 605
Query: 131 AFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDY 190
A+ L EM + P TY S++DG + ++ + + + K++ + +
Sbjct: 606 AYQLLEEM-KTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSS-- 662
Query: 191 VIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERG 250
+I +G+ A +I + + + T +L AL K + EA+ + + E
Sbjct: 663 LIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKELK 722
Query: 251 ITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVE 310
T Y +N LCK + + +++ ++G P + + ++ G E
Sbjct: 723 CTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAG 782
Query: 311 ELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGL 370
L G + DS C ++++E + + A +L + + + T VLLD L
Sbjct: 783 ALFDRFKANGGVPDSACYNAMIEGLSNGNRAMDAFSLFEETRRRGLPIHNKTCVVLLDTL 842
Query: 371 FKDGRMEEAVRIFDYMKE 388
K+ +E+A + ++E
Sbjct: 843 HKNDCLEQAAIVGAVLRE 860
Score = 72.4 bits (176), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 61/296 (20%), Positives = 132/296 (44%), Gaps = 6/296 (2%)
Query: 146 PGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPK-HFLSGNDYVIQKLSDMGKTYAA 204
P FS Y++++ +++ + M E P H + +I+ + G+ +A
Sbjct: 166 PAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTT---LIRGFAKEGRVDSA 222
Query: 205 EMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNV 264
+ ++ + + K G+V A + +H I G+ + Y + + V
Sbjct: 223 LSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGV 282
Query: 265 LCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLD 324
LCK ++ +E + + + +PC + + GK+ E LL KG +
Sbjct: 283 LCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPS 342
Query: 325 SFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFD 384
+ ++ ++D+A+ + +++K + +++TY++L+D L + G+++ A + D
Sbjct: 343 VIAYNCILTCLRKMGKVDEALKVFEEMKK-DAAPNLSTYNILIDMLCRAGKLDTAFELRD 401
Query: 385 YMKELKVVSSSSFV-IVVSRLCHLKELRKAMKNHDEMLKMGHKPDEATYKQVISGF 439
M++ + + V I+V RLC ++L +A +EM PDE T+ +I G
Sbjct: 402 SMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGL 457
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/274 (20%), Positives = 109/274 (39%), Gaps = 37/274 (13%)
Query: 14 ALSLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAM 73
A ++V+D + G ++ M+ GF P V +++D L + + + A L+
Sbjct: 589 AYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEE- 647
Query: 74 VRDGVSPNKFTWSLVAQILCRSGKFEVVLGLLDSGIYSSVMYNLVIDFYSKKGDFGAAFD 133
+S + E+ + V+Y+ +ID + K G A+
Sbjct: 648 -------------------AKSKRIEL----------NVVIYSSLIDGFGKVGRIDEAYL 678
Query: 134 RLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGL--MVEKKLLPKHFLSGNDYV 191
L E+ + LTP T++S+LD + E E+++ +V M E K P G +
Sbjct: 679 ILEELMQ-KGLTPNLYTWNSLLDALVKAE--EINEALVCFQSMKELKCTPNQVTYG--IL 733
Query: 192 IQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGI 251
I L + K A + ++ + ++ + M+ L+K G + EA ++ G
Sbjct: 734 INGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGG 793
Query: 252 TVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERG 285
+ Y A + L ++ + L + RG
Sbjct: 794 VPDSACYNAMIEGLSNGNRAMDAFSLFEETRRRG 827
Score = 39.7 bits (91), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 35/179 (19%), Positives = 77/179 (43%), Gaps = 8/179 (4%)
Query: 221 DTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRD 280
+TC M+ K +++E + ++ + S Y + + + + L +
Sbjct: 134 NTCIEMVLGCVKANKLREGYDVVQMMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQ 193
Query: 281 VVERGYIPCAMELSRFVASQCGKGKWKE----VEELLSAVLDKGLLLDSFCCSSLMEYYC 336
+ E GY P + + +G+ ++E+ S+ LD ++L + C S +
Sbjct: 194 MQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKV-- 251
Query: 337 SNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSS 395
++D A +IE D TY ++ L K R++EAV +F+++++ + V +
Sbjct: 252 --GKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCT 308
>sp|Q9LUR2|PP238_ARATH Putative pentatricopeptide repeat-containing protein At3g16710,
mitochondrial OS=Arabidopsis thaliana GN=At3g16710 PE=3
SV=1
Length = 507
Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 87/415 (20%), Positives = 182/415 (43%), Gaps = 46/415 (11%)
Query: 32 LEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQI 91
+ ++ M++ G P + CN ++ + ++ ASC G M++ G P+ T++ +
Sbjct: 103 ISLFEQMQILGIPPLLCTCNIVMHCVCLSSQPCRASCFLGKMMKLGFEPDLVTFTSLLNG 162
Query: 92 LCRSGKFEVVLGLLDS----GIYSSVM-YNLVIDFYSKKGDFGAAFDRLNEM-CNGRNLT 145
C + E + L D G +V+ Y +I K A + N+M NG
Sbjct: 163 YCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSR-- 220
Query: 146 PGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAE 205
P TY++++ G L ++G+ A
Sbjct: 221 PNVVTYNALVTG-------------------------------------LCEIGRWGDAA 243
Query: 206 MIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVL 265
+ + +IE T ++ A K G++ EA ++Y+++ + + Y + +N L
Sbjct: 244 WLLRDMMKRRIEPNVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGL 303
Query: 266 CKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDS 325
C +E + + G P + + + C + ++ ++ + KG++ ++
Sbjct: 304 CMYGLLDEARQMFYLMERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANT 363
Query: 326 FCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDY 385
+ L++ YC + D A + ++ + D+ TY+VLLDGL +G++E+A+ IF+Y
Sbjct: 364 ITYTVLIQGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLLDGLCCNGKVEKALMIFEY 423
Query: 386 MKELKV-VSSSSFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDEATYKQVISGF 439
M++ ++ ++ ++ I++ +C L ++ A + G KP+ TY +ISGF
Sbjct: 424 MRKREMDINIVTYTIIIQGMCKLGKVEDAFDLFCSLFSKGMKPNVITYTTMISGF 478
Score = 78.6 bits (192), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 81/405 (20%), Positives = 170/405 (41%), Gaps = 47/405 (11%)
Query: 36 RMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRS 95
+MM++ GF P + +LL+ N I A L+ ++ G PN T++ + + LC++
Sbjct: 143 KMMKL-GFEPDLVTFTSLLNGYCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIRCLCKN 201
Query: 96 GKFEVVLGLLDS-GIYSS----VMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFST 150
+ L + G S V YN ++ + G +G A L +M R + P T
Sbjct: 202 RHLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMK-RRIEPNVIT 260
Query: 151 YSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKR 210
+++++D + K + + +M++ + P F G+ +I L G A +F
Sbjct: 261 FTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGS--LINGLCMYGLLDEARQMFYL 318
Query: 211 ACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQ 270
+ ++ K RV++ ++I++ +S++G+ Y + C +
Sbjct: 319 MERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGR 378
Query: 271 PEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSS 330
P+ + + R P + +LLD CC
Sbjct: 379 PDVAQEVFNQMSSRRAPP--------------------------DIRTYNVLLDGLCC-- 410
Query: 331 LMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIF--DYMKE 388
N +++KA+ + + K + +++ TY +++ G+ K G++E+A +F + K
Sbjct: 411 -------NGKVEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVEDAFDLFCSLFSKG 463
Query: 389 LKVVSSSSFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDEATYK 433
+K + ++ ++S C + +A +M + G P+E+ YK
Sbjct: 464 MK-PNVITYTTMISGFCRRGLIHEADSLFKKMKEDGFLPNESVYK 507
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 65/343 (18%), Positives = 128/343 (37%), Gaps = 39/343 (11%)
Query: 18 VLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDG 77
+L+ Y H D + ++ + GF P V L+ L + + A L+ M +G
Sbjct: 159 LLNGYCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNG 218
Query: 78 VSPNKFTWSLVAQILCRSGKFEVVLGLLDSGIYSSVMYNLV-----IDFYSKKGDFGAAF 132
PN T++ + LC G++ LL + + N++ ID + K G A
Sbjct: 219 SRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALIDAFVKVGKLMEAK 278
Query: 133 DRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGN---- 188
+ N M ++ P TY S+++G Y + + ++ LM P +
Sbjct: 279 ELYNVMIQ-MSVYPDVFTYGSLINGLCMYGLLDEARQMFYLMERNGCYPNEVIYTTLIHG 337
Query: 189 -----------------------------DYVIQKLSDMGKTYAAEMIFKRACDEKIELQ 219
+IQ +G+ A+ +F + +
Sbjct: 338 FCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQMSSRRAPPD 397
Query: 220 DDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLR 279
T +L L G+V++A+ I+ + +R + + Y + +CK + E+ L
Sbjct: 398 IRTYNVLLDGLCCNGKVEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVEDAFDLFC 457
Query: 280 DVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLL 322
+ +G P + + ++ C +G E + L + + G L
Sbjct: 458 SLFSKGMKPNVITYTTMISGFCRRGLIHEADSLFKKMKEDGFL 500
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/250 (21%), Positives = 106/250 (42%), Gaps = 8/250 (3%)
Query: 14 ALSLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAM 73
+ ++D + G M+ E+Y +M P V +L++ L + A ++ M
Sbjct: 260 TFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMYGLLDEARQMFYLM 319
Query: 74 VRDGVSPNKFTWSLVAQILCRSGKFE----VVLGLLDSGIYS-SVMYNLVIDFYSKKGDF 128
R+G PN+ ++ + C+S + E + + G+ + ++ Y ++I Y G
Sbjct: 320 ERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGRP 379
Query: 129 GAAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGN 188
A + N+M + R P TY+ +LDG K E + I M ++++ +
Sbjct: 380 DVAQEVFNQM-SSRRAPPDIRTYNVLLDGLCCNGKVEKALMIFEYMRKREMDIN--IVTY 436
Query: 189 DYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISE 248
+IQ + +GK A +F + ++ T M+ + G + EA ++ + E
Sbjct: 437 TIIIQGMCKLGKVEDAFDLFCSLFSKGMKPNVITYTTMISGFCRRGLIHEADSLFKKMKE 496
Query: 249 RGITVRDSDY 258
G +S Y
Sbjct: 497 DGFLPNESVY 506
>sp|Q9SS81|PP221_ARATH Pentatricopeptide repeat-containing protein At3g09060
OS=Arabidopsis thaliana GN=At3g09060 PE=2 SV=1
Length = 687
Score = 107 bits (266), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 112/480 (23%), Positives = 208/480 (43%), Gaps = 44/480 (9%)
Query: 1 MIQSCEGRDSQSDALSLVLDCYSHKGLFMDGLEVYRMMR-VYGFVPAVSACNALLDALYR 59
+I+S E + + ALS V+ Y + L+V++ MR ++G PA+ + N LL+A
Sbjct: 68 LIRSQECKCDEDVALS-VIKTYGKNSMPDQALDVFKRMREIFGCEPAIRSYNTLLNAFVE 126
Query: 60 QNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSGKFEVVLGLLD----SGIYSSVM- 114
+ L+ GV+PN T++++ ++ C+ +FE G LD G V
Sbjct: 127 AKQWVKVESLFAYFETAGVAPNLQTYNVLIKMSCKKKEFEKARGFLDWMWKEGFKPDVFS 186
Query: 115 YNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDG--ARRYEKT--EVSDRI 170
Y+ VI+ +K G A + +EM R + P + Y+ ++DG + KT E+ DR+
Sbjct: 187 YSTVINDLAKAGKLDDALELFDEMSE-RGVAPDVTCYNILIDGFLKEKDHKTAMELWDRL 245
Query: 171 V------------GLMVE------------------KKLLPKHFLSGNDYVIQKLSDMGK 200
+ +M+ K+ + L +I L D G
Sbjct: 246 LEDSSVYPNVKTHNIMISGLSKCGRVDDCLKIWERMKQNEREKDLYTYSSLIHGLCDAGN 305
Query: 201 TYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYA 260
AE +F + K + T ML + G++KE+++++ ++ + +V Y
Sbjct: 306 VDKAESVFNELDERKASIDVVTYNTMLGGFCRCGKIKESLELWRIMEHKN-SVNIVSYNI 364
Query: 261 FVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKG 320
+ L + + +E + R + +GY F+ C G + ++ V G
Sbjct: 365 LIKGLLENGKIDEATMIWRLMPAKGYAADKTTYGIFIHGLCVNGYVNKALGVMQEVESSG 424
Query: 321 LLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAV 380
LD + +S+++ C +++++A L ++ K L+ + L+ GL +D R+ EA
Sbjct: 425 GHLDVYAYASIIDCLCKKKRLEEASNLVKEMSKHGVELNSHVCNALIGGLIRDSRLGEAS 484
Query: 381 RIFDYM-KELKVVSSSSFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDEATYKQVISGF 439
M K + S+ I++ LC + +A EML+ G KPD TY ++ G
Sbjct: 485 FFLREMGKNGCRPTVVSYNILICGLCKAGKFGEASAFVKEMLENGWKPDLKTYSILLCGL 544
Score = 78.6 bits (192), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 109/510 (21%), Positives = 193/510 (37%), Gaps = 85/510 (16%)
Query: 6 EGRDSQSDALSLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRL 65
EG + S V++ + G D LE++ M G P V+ N L+D ++ + +
Sbjct: 178 EGFKPDVFSYSTVINDLAKAGKLDDALELFDEMSERGVAPDVTCYNILIDGFLKEKDHKT 237
Query: 66 ASCLYGAMVRDG-VSPNKFTWSLVAQILCRSGKFEVVLGLL----------DSGIYSSVM 114
A L+ ++ D V PN T +++ L + G+ + L + D YSS++
Sbjct: 238 AMELWDRLLEDSSVYPNVKTHNIMISGLSKCGRVDDCLKIWERMKQNEREKDLYTYSSLI 297
Query: 115 YNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLM 174
+ L G+ A NE+ + R + TY+++L G R K + S + +M
Sbjct: 298 HGLC-----DAGNVDKAESVFNEL-DERKASIDVVTYNTMLGGFCRCGKIKESLELWRIM 351
Query: 175 VEK----------------------------KLLPK--------------HFLSGNDYVI 192
K +L+P H L N YV
Sbjct: 352 EHKNSVNIVSYNILIKGLLENGKIDEATMIWRLMPAKGYAADKTTYGIFIHGLCVNGYVN 411
Query: 193 QKLSDMGKT---------YAAEMIFKRACDEK----------------IELQDDTCGCML 227
+ L M + YA I C +K +EL C ++
Sbjct: 412 KALGVMQEVESSGGHLDVYAYASIIDCLCKKKRLEEASNLVKEMSKHGVELNSHVCNALI 471
Query: 228 KALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYI 287
L ++ R+ EA + + G Y + LCK + E +++++E G+
Sbjct: 472 GGLIRDSRLGEASFFLREMGKNGCRPTVVSYNILICGLCKAGKFGEASAFVKEMLENGWK 531
Query: 288 PCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIAL 347
P S + C K EL L GL D + L+ CS ++D A+ +
Sbjct: 532 PDLKTYSILLCGLCRDRKIDLALELWHQFLQSGLETDVMMHNILIHGLCSVGKLDDAMTV 591
Query: 348 HIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSS-SSFVIVVSRLCH 406
+E + ++ TY+ L++G FK G A I+ YM ++ + S+ ++ LC
Sbjct: 592 MANMEHRNCTANLVTYNTLMEGFFKVGDSNRATVIWGYMYKMGLQPDIISYNTIMKGLCM 651
Query: 407 LKELRKAMKNHDEMLKMGHKPDEATYKQVI 436
+ + AM+ D+ G P T+ ++
Sbjct: 652 CRGVSYAMEFFDDARNHGIFPTVYTWNILV 681
Score = 39.7 bits (91), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 1/113 (0%)
Query: 329 SSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYM-K 387
++L+ + +Q K +L E + ++ TY+VL+ K E+A D+M K
Sbjct: 118 NTLLNAFVEAKQWVKVESLFAYFETAGVAPNLQTYNVLIKMSCKKKEFEKARGFLDWMWK 177
Query: 388 ELKVVSSSSFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDEATYKQVISGFM 440
E S+ V++ L +L A++ DEM + G PD Y +I GF+
Sbjct: 178 EGFKPDVFSYSTVINDLAKAGKLDDALELFDEMSERGVAPDVTCYNILIDGFL 230
>sp|Q9SV46|PP282_ARATH Pentatricopeptide repeat-containing protein At3g54980,
mitochondrial OS=Arabidopsis thaliana GN=At3g54980 PE=2
SV=1
Length = 851
Score = 106 bits (265), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 106/476 (22%), Positives = 203/476 (42%), Gaps = 48/476 (10%)
Query: 6 EGRDSQSDALSLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVS----------------- 48
EG S S++++ + G LE Y+ M V G P+V
Sbjct: 368 EGPSPNSVTFSVLIEWFRKNGEMEKALEFYKKMEVLGLTPSVFHVHTIIQGWLKGQKHEE 427
Query: 49 -----------------ACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQI 91
CN +L L +Q + A+ L M G+ PN +++ V
Sbjct: 428 ALKLFDESFETGLANVFVCNTILSWLCKQGKTDEATELLSKMESRGIGPNVVSYNNVMLG 487
Query: 92 LCRSGKFE----VVLGLLDSGI-YSSVMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTP 146
CR + V +L+ G+ ++ Y+++ID + D A + +N M + N+
Sbjct: 488 HCRQKNMDLARIVFSNILEKGLKPNNYTYSILIDGCFRNHDEQNALEVVNHMTSS-NIEV 546
Query: 147 GFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEM 206
Y +I++G + +T + ++ M+E+K L +S N +I G+ +A
Sbjct: 547 NGVVYQTIINGLCKVGQTSKARELLANMIEEKRLCVSCMSYNS-IIDGFFKEGEMDSAVA 605
Query: 207 IFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLC 266
++ C I T ++ L K R+ +A+++ + +G+ + Y A ++ C
Sbjct: 606 AYEEMCGNGISPNVITYTSLMNGLCKNNRMDQALEMRDEMKNKGVKLDIPAYGALIDGFC 665
Query: 267 KEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSF 326
K E L +++E G P + ++ G +L +L GL D
Sbjct: 666 KRSNMESASALFSELLEEGLNPSQPIYNSLISGFRNLGNMVAALDLYKKMLKDGLRCDLG 725
Query: 327 CCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYM 386
++L++ + + A L+ +++ + D Y V+++GL K G+ + V++F+ M
Sbjct: 726 TYTTLIDGLLKDGNLILASELYTEMQAVGLVPDEIIYTVIVNGLSKKGQFVKVVKMFEEM 785
Query: 387 KELKVVSSSSFVIVVSRLC--HLKE--LRKAMKNHDEMLKMGHKPDEATYKQVISG 438
K+ V + V++ + + H +E L +A + HDEML G PD AT+ ++SG
Sbjct: 786 KKNNVTPN---VLIYNAVIAGHYREGNLDEAFRLHDEMLDKGILPDGATFDILVSG 838
Score = 79.0 bits (193), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 89/420 (21%), Positives = 173/420 (41%), Gaps = 46/420 (10%)
Query: 28 FMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSL 87
+ L ++ M G P + L++ + E+ A Y M G++P+ F
Sbjct: 355 LVSALVLFDKMEKEGPSPNSVTFSVLIEWFRKNGEMEKALEFYKKMEVLGLTPSVFHVHT 414
Query: 88 VAQILCRSGKFEVVLGLLD----SGIYSSVMYNLVIDFYSKKGDFGAAFDRLNEMCNGRN 143
+ Q + K E L L D +G+ + + N ++ + K+G A + L++M R
Sbjct: 415 IIQGWLKGQKHEEALKLFDESFETGLANVFVCNTILSWLCKQGKTDEATELLSKM-ESRG 473
Query: 144 LTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYA 203
+ P +Y++++ G R + +++ + ++EK L P N+Y L D
Sbjct: 474 IGPNVVSYNNVMLGHCRQKNMDLARIVFSNILEKGLKP------NNYTYSILID------ 521
Query: 204 AEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVN 263
GC + + A+++ + ++ I V Y +N
Sbjct: 522 --------------------GCF-----RNHDEQNALEVVNHMTSSNIEVNGVVYQTIIN 556
Query: 264 VLCKEHQPEEVCGLLRDVVE--RGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGL 321
LCK Q + LL +++E R + C M + + +G+ + G+
Sbjct: 557 GLCKVGQTSKARELLANMIEEKRLCVSC-MSYNSIIDGFFKEGEMDSAVAAYEEMCGNGI 615
Query: 322 LLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVR 381
+ +SLM C N ++D+A+ + +++ LD+ Y L+DG K ME A
Sbjct: 616 SPNVITYTSLMNGLCKNNRMDQALEMRDEMKNKGVKLDIPAYGALIDGFCKRSNMESASA 675
Query: 382 IFDYMKELKVVSSSS-FVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDEATYKQVISGFM 440
+F + E + S + ++S +L + A+ + +MLK G + D TY +I G +
Sbjct: 676 LFSELLEEGLNPSQPIYNSLISGFRNLGNMVAALDLYKKMLKDGLRCDLGTYTTLIDGLL 735
Score = 75.9 bits (185), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 110/518 (21%), Positives = 191/518 (36%), Gaps = 96/518 (18%)
Query: 7 GRDSQSDALSLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLA 66
G + S A + +L+ YS +++ M +P N L AL ++N + A
Sbjct: 158 GFEVNSRAFNYLLNAYSKDRQTDHAVDIVNQMLELDVIPFFPYVNRTLSALVQRNSLTEA 217
Query: 67 SCLYGAMVRDGVSPNKFTWSLVAQILCRSGKFEVVLGLLDSGI-----YSSVMYNLVIDF 121
LY MV GV + T L+ + R K L +L I S++Y+L +
Sbjct: 218 KELYSRMVAIGVDGDNVTTQLLMRASLREEKPAEALEVLSRAIERGAEPDSLLYSLAVQA 277
Query: 122 YSKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSI---------LDGARRYEKTEVSDRIVG 172
K D A L EM + P TY+S+ +D A R + +SD I
Sbjct: 278 CCKTLDLAMANSLLREMKEKKLCVPSQETYTSVILASVKQGNMDDAIRLKDEMLSDGISM 337
Query: 173 LMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSK 232
+V L ND V +A ++F + E T +++ K
Sbjct: 338 NVVAATSLITGHCKNNDLV-----------SALVLFDKMEKEGPSPNSVTFSVLIEWFRK 386
Query: 233 EGRVKEAIQIYHLISERGITVR-------------------------DSDYYAFVNV--- 264
G +++A++ Y + G+T +S NV
Sbjct: 387 NGEMEKALEFYKKMEVLGLTPSVFHVHTIIQGWLKGQKHEEALKLFDESFETGLANVFVC 446
Query: 265 ------LCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLD 318
LCK+ + +E LL + RG P + + + C + + S +L+
Sbjct: 447 NTILSWLCKQGKTDEATELLSKMESRGIGPNVVSYNNVMLGHCRQKNMDLARIVFSNILE 506
Query: 319 KGLLLDSFCCS-----------------------------------SLMEYYCSNRQIDK 343
KGL +++ S +++ C Q K
Sbjct: 507 KGLKPNNYTYSILIDGCFRNHDEQNALEVVNHMTSSNIEVNGVVYQTIINGLCKVGQTSK 566
Query: 344 AIALHIK-IEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSS-SFVIVV 401
A L IE+ + + +Y+ ++DG FK+G M+ AV ++ M + + ++ ++
Sbjct: 567 ARELLANMIEEKRLCVSCMSYNSIIDGFFKEGEMDSAVAAYEEMCGNGISPNVITYTSLM 626
Query: 402 SRLCHLKELRKAMKNHDEMLKMGHKPDEATYKQVISGF 439
+ LC + +A++ DEM G K D Y +I GF
Sbjct: 627 NGLCKNNRMDQALEMRDEMKNKGVKLDIPAYGALIDGF 664
Score = 66.6 bits (161), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 74/334 (22%), Positives = 137/334 (41%), Gaps = 24/334 (7%)
Query: 113 VMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFSTY-SSILDGARR----------- 160
V + L+ S +G A D L + N TP S S ++D A+
Sbjct: 108 VFWVLIHILVSSPETYGRASDLLIRYVSTSNPTPMASVLVSKLVDSAKSFGFEVNSRAFN 167
Query: 161 -----YEKTEVSDR---IVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRAC 212
Y K +D IV M+E ++P F + + L A+ ++ R
Sbjct: 168 YLLNAYSKDRQTDHAVDIVNQMLELDVIP--FFPYVNRTLSALVQRNSLTEAKELYSRMV 225
Query: 213 DEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPE 272
++ + T +++A +E + EA+++ ERG Y V CK
Sbjct: 226 AIGVDGDNVTTQLLMRASLREEKPAEALEVLSRAIERGAEPDSLLYSLAVQACCKTLDLA 285
Query: 273 EVCGLLRDVVERGY-IPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSL 331
LLR++ E+ +P + + + +G + L +L G+ ++ +SL
Sbjct: 286 MANSLLREMKEKKLCVPSQETYTSVILASVKQGNMDDAIRLKDEMLSDGISMNVVAATSL 345
Query: 332 MEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKV 391
+ +C N + A+ L K+EK S + T+ VL++ K+G ME+A+ + M+ L +
Sbjct: 346 ITGHCKNNDLVSALVLFDKMEKEGPSPNSVTFSVLIEWFRKNGEMEKALEFYKKMEVLGL 405
Query: 392 VSSSSFV-IVVSRLCHLKELRKAMKNHDEMLKMG 424
S V ++ ++ +A+K DE + G
Sbjct: 406 TPSVFHVHTIIQGWLKGQKHEEALKLFDESFETG 439
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 81/406 (19%), Positives = 153/406 (37%), Gaps = 79/406 (19%)
Query: 18 VLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDG 77
+L +G + E+ M G P V + N ++ RQ + LA ++ ++ G
Sbjct: 449 ILSWLCKQGKTDEATELLSKMESRGIGPNVVSYNNVMLGHCRQKNMDLARIVFSNILEKG 508
Query: 78 VSPNKFTWSL-----------------------------------VAQILCRSGKFEVVL 102
+ PN +T+S+ + LC+ G+
Sbjct: 509 LKPNNYTYSILIDGCFRNHDEQNALEVVNHMTSSNIEVNGVVYQTIINGLCKVGQTSKAR 568
Query: 103 GLLDSGI------YSSVMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILD 156
LL + I S + YN +ID + K+G+ +A EMC G ++P TY+S+++
Sbjct: 569 ELLANMIEEKRLCVSCMSYNSIIDGFFKEGEMDSAVAAYEEMC-GNGISPNVITYTSLMN 627
Query: 157 G----ARRYEKTEVSDR-------------------------------IVGLMVEKKLLP 181
G R + E+ D + ++E+ L P
Sbjct: 628 GLCKNNRMDQALEMRDEMKNKGVKLDIPAYGALIDGFCKRSNMESASALFSELLEEGLNP 687
Query: 182 KHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQ 241
+ + +I ++G AA ++K+ + + T ++ L K+G + A +
Sbjct: 688 SQPIY--NSLISGFRNLGNMVAALDLYKKMLKDGLRCDLGTYTTLIDGLLKDGNLILASE 745
Query: 242 IYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQC 301
+Y + G+ + Y VN L K+ Q +V + ++ + P + + +A
Sbjct: 746 LYTEMQAVGLVPDEIIYTVIVNGLSKKGQFVKVVKMFEEMKKNNVTPNVLIYNAVIAGHY 805
Query: 302 GKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIAL 347
+G E L +LDKG+L D L+ N Q +A +L
Sbjct: 806 REGNLDEAFRLHDEMLDKGILPDGATFDILVSGQVGNLQPVRAASL 851
>sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560
OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1
Length = 915
Score = 106 bits (264), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 102/403 (25%), Positives = 173/403 (42%), Gaps = 49/403 (12%)
Query: 45 PAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSGKFEV---V 101
P V L+ +L A L M G+ PN T++++ LC KFE +
Sbjct: 321 PTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKAREL 380
Query: 102 LG-LLDSGIYSSVM-YNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDGAR 159
LG +L+ G+ +V+ YN +I+ Y K+G A D + E+ R L+P TY+ ++ G
Sbjct: 381 LGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVV-ELMESRKLSPNTRTYNELIKG-- 437
Query: 160 RYEKTEVSDR--IVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIE 217
Y K+ V ++ M+E+K+LP D V TY +
Sbjct: 438 -YCKSNVHKAMGVLNKMLERKVLP-------DVV---------TYNS------------- 467
Query: 218 LQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGL 277
L D C + G A ++ L+++RG+ Y + ++ LCK + EE C L
Sbjct: 468 LIDGQC--------RSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDL 519
Query: 278 LRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCS 337
+ ++G P + + + C GK E +L +L K L +S ++L+ C+
Sbjct: 520 FDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCA 579
Query: 338 NRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKV-VSSSS 396
+ ++ +A L K+ K+ V+T +L+ L KDG + A F M + +
Sbjct: 580 DGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHT 639
Query: 397 FVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDEATYKQVISGF 439
+ + C L A +M + G PD TY +I G+
Sbjct: 640 YTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGY 682
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 111/517 (21%), Positives = 217/517 (41%), Gaps = 82/517 (15%)
Query: 1 MIQSCEGRDSQSDALSLV------------------LDCYSHKGLFMDGLEVYRMMRVYG 42
+I+S G + +S+AL+LV +D + F E+ M G
Sbjct: 329 LIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKG 388
Query: 43 FVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSGKFEVVL 102
+P V NAL++ ++ I A + M +SPN T++ + + C+S + +
Sbjct: 389 LMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSNVHKA-M 447
Query: 103 GLLDSGIYSSVM-----YNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDG 157
G+L+ + V+ YN +ID + G+F +A+ RL + N R L P TY+S++D
Sbjct: 448 GVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAY-RLLSLMNDRGLVPDQWTYTSMIDS 506
Query: 158 ARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIE 217
+ ++ E + + + +K + P + +I GK A ++ ++ +
Sbjct: 507 LCKSKRVEEACDLFDSLEQKGVNPNVVMY--TALIDGYCKAGKVDEAHLMLEKMLSKNCL 564
Query: 218 LQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGL 277
T ++ L +G++KEA + + + G+ S ++ L K+ +
Sbjct: 565 PNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSR 624
Query: 278 LRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCS 337
+ ++ G P A + F+ + C +G+ + E++++ + + G+ D F SSL++ Y
Sbjct: 625 FQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGD 684
Query: 338 NRQIDKAI------------------------ALHIKIEKLKGS---------------- 357
Q + A L +K K KGS
Sbjct: 685 LGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAMSNMMEFDTV 744
Query: 358 -------------LDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVI--VVS 402
+ +Y+ L+ G+ + G + A ++FD+M+ + +S S V ++S
Sbjct: 745 VELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSELVFNALLS 804
Query: 403 RLCHLKELRKAMKNHDEMLKMGHKPDEATYKQVISGF 439
C LK+ +A K D+M+ +GH P + K +I G
Sbjct: 805 CCCKLKKHNEAAKVVDDMICVGHLPQLESCKVLICGL 841
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/243 (25%), Positives = 110/243 (45%), Gaps = 5/243 (2%)
Query: 202 YAAEMIFKRACDEKIELQDD-TCGC---MLKALSKEGRVKEAIQIYHLISERGITVRDSD 257
Y ++ K DE+ EL+ GC +L +L++ G V E Q+Y + E +
Sbjct: 161 YVLDLCRKMNKDERFELKYKLIIGCYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYT 220
Query: 258 YYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVL 317
Y VN CK EE + +VE G P + + C + ++ + +
Sbjct: 221 YNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMP 280
Query: 318 DKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRME 377
KG + + L+ C R+ID+A+ L +K++ + V TY VL+ L R
Sbjct: 281 LKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKS 340
Query: 378 EAVRIFDYMKELKVVSS-SSFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDEATYKQVI 436
EA+ + M+E + + ++ +++ LC + KA + +ML+ G P+ TY +I
Sbjct: 341 EALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALI 400
Query: 437 SGF 439
+G+
Sbjct: 401 NGY 403
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 81/390 (20%), Positives = 153/390 (39%), Gaps = 65/390 (16%)
Query: 42 GFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSGKF-EV 100
G P V AL+D + ++ A + M+ PN T++ + LC GK E
Sbjct: 527 GVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEA 586
Query: 101 VL---GLLDSGIYSSVMYN-LVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILD 156
L ++ G+ +V + ++I K GDF A+ R +M + P TY++ +
Sbjct: 587 TLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSS-GTKPDAHTYTTFIQ 645
Query: 157 GARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKI 216
R + ++ ++ M E + P F + +I+ D+G+T A + KR D
Sbjct: 646 TYCREGRLLDAEDMMAKMRENGVSPDLFTYSS--LIKGYGDLGQTNFAFDVLKRMRDTGC 703
Query: 217 ELQDDTCGCMLKAL--SKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEV 274
E T ++K L K G+ K + + + A N++ + + V
Sbjct: 704 EPSQHTFLSLIKHLLEMKYGKQKGS---------------EPELCAMSNMM----EFDTV 744
Query: 275 CGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELL------SAVLDKGLLLDSF-- 326
LL +VE P A + + C G + E++ + L+ ++
Sbjct: 745 VELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSELVFNALLS 804
Query: 327 CCSSLMEYYCSNRQIDKAI----------------ALHIKIEKLKGSL------------ 358
CC L ++ + + +D I L+ K EK +G+
Sbjct: 805 CCCKLKKHNEAAKVVDDMICVGHLPQLESCKVLICGLYKKGEKERGTSVFQNLLQCGYYE 864
Query: 359 DVATYDVLLDGLFKDGRMEEAVRIFDYMKE 388
D + +++DG+ K G +E +F+ M++
Sbjct: 865 DELAWKIIIDGVGKQGLVEAFYELFNVMEK 894
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 64/348 (18%), Positives = 139/348 (39%), Gaps = 23/348 (6%)
Query: 44 VPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSGKFEVVLG 103
+P NAL+ L +++ A+ L MV+ G+ P T +++ L + G F+
Sbjct: 564 LPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYS 623
Query: 104 ----LLDSGIYSSV-MYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDGA 158
+L SG Y I Y ++G A D + +M ++P TYSS++ G
Sbjct: 624 RFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKM-RENGVSPDLFTYSSLIKGY 682
Query: 159 RRYEKTEVSDRIVGLMVEKKLLP---------KHFLS-------GNDYVIQKLSDMGKTY 202
+T + ++ M + P KH L G++ + +S+M +
Sbjct: 683 GDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAMSNMMEFD 742
Query: 203 AAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIY-HLISERGITVRDSDYYAF 261
+ ++ + + + ++ + + G ++ A +++ H+ GI+ + + A
Sbjct: 743 TVVELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSELVFNAL 802
Query: 262 VNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGL 321
++ CK + E ++ D++ G++P + KG+ + + +L G
Sbjct: 803 LSCCCKLKKHNEAAKVVDDMICVGHLPQLESCKVLICGLYKKGEKERGTSVFQNLLQCGY 862
Query: 322 LLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDG 369
D +++ ++ L +EK TY +L++G
Sbjct: 863 YEDELAWKIIIDGVGKQGLVEAFYELFNVMEKNGCKFSSQTYSLLIEG 910
Score = 32.0 bits (71), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 25/124 (20%), Positives = 54/124 (43%), Gaps = 5/124 (4%)
Query: 2 IQSCEGRDSQSDALSLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQN 61
+Q EG + +L C + +V M G +P + +C L+ LY++
Sbjct: 786 MQRNEGISPSELVFNALLSCCCKLKKHNEAAKVVDDMICVGHLPQLESCKVLICGLYKKG 845
Query: 62 EIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSGKFEVVLGLLD----SGI-YSSVMYN 116
E + ++ +++ G ++ W ++ + + G E L + +G +SS Y+
Sbjct: 846 EKERGTSVFQNLLQCGYYEDELAWKIIIDGVGKQGLVEAFYELFNVMEKNGCKFSSQTYS 905
Query: 117 LVID 120
L+I+
Sbjct: 906 LLIE 909
>sp|Q9SSR4|PPR77_ARATH Pentatricopeptide repeat-containing protein At1g52620
OS=Arabidopsis thaliana GN=At1g52620 PE=2 SV=1
Length = 819
Score = 105 bits (263), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 113/472 (23%), Positives = 210/472 (44%), Gaps = 51/472 (10%)
Query: 13 DALSLVLDCYSHKGLFMDGLEVYR-MMRVYGFVPAVSACNALLDALYRQNEIRLASCLYG 71
+ALS VL Y+ G +E+Y ++ +Y VP V ACN+LL L + + A +Y
Sbjct: 135 EALSHVLHAYAESGSLSKAVEIYDYVVELYDSVPDVIACNSLLSLLVKSRRLGDARKVYD 194
Query: 72 AMVRDGVSPNKFTWSLVAQILCRSGKFEVVLGLLDSG-----IYSSVMYNLVIDFYSKKG 126
M G S + ++ ++ + +C GK EV L++ I + V YN +I Y K G
Sbjct: 195 EMCDRGDSVDNYSTCILVKGMCNEGKVEVGRKLIEGRWGKGCIPNIVFYNTIIGGYCKLG 254
Query: 127 DFGAAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKL-LPKHFL 185
D A+ E+ + P T+ ++++G + SDR++ + E+ L + FL
Sbjct: 255 DIENAYLVFKEL-KLKGFMPTLETFGTMINGFCKEGDFVASDRLLSEVKERGLRVSVWFL 313
Query: 186 SGNDYVIQKLSDMGKTYAAEMI-FKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYH 244
N+ + K K AE I + A D K ++ T ++ L KEG+ + A+
Sbjct: 314 --NNIIDAKYRHGYKVDPAESIGWIIANDCKPDVA--TYNILINRLCKEGKKEVAVGFLD 369
Query: 245 LISERGITVRDSDYYAFVNVLCKEHQ-----------------PE-----------EVCG 276
S++G+ + Y + CK + P+ V G
Sbjct: 370 EASKKGLIPNNLSYAPLIQAYCKSKEYDIASKLLLQMAERGCKPDIVTYGILIHGLVVSG 429
Query: 277 LLRDVV-------ERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCS 329
+ D V +RG P A + ++ C G++ + L S +LD+ +L D++ +
Sbjct: 430 HMDDAVNMKVKLIDRGVSPDAAIYNMLMSGLCKTGRFLPAKLLFSEMLDRNILPDAYVYA 489
Query: 330 SLMEYYCSNRQIDKA-IALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKE 388
+L++ + + D+A + +EK +DV ++ ++ G + G ++EA+ + M E
Sbjct: 490 TLIDGFIRSGDFDEARKVFSLSVEK-GVKVDVVHHNAMIKGFCRSGMLDEALACMNRMNE 548
Query: 389 LKVVSSS-SFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDEATYKQVISGF 439
+V ++ ++ +++ A+K M K KP+ TY +I+GF
Sbjct: 549 EHLVPDKFTYSTIIDGYVKQQDMATAIKIFRYMEKNKCKPNVVTYTSLINGF 600
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 86/483 (17%), Positives = 185/483 (38%), Gaps = 59/483 (12%)
Query: 13 DALSLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGA 72
+ +++ + +G F+ + ++ G +V N ++DA YR + G
Sbjct: 276 ETFGTMINGFCKEGDFVASDRLLSEVKERGLRVSVWFLNNIIDAKYRHGYKVDPAESIGW 335
Query: 73 MVRDGVSPNKFTWSLVAQILCRSGKFEVVLGLLDSG-----IYSSVMYNLVIDFYSKKGD 127
++ + P+ T++++ LC+ GK EV +G LD I +++ Y +I Y K +
Sbjct: 336 IIANDCKPDVATYNILINRLCKEGKKEVAVGFLDEASKKGLIPNNLSYAPLIQAYCKSKE 395
Query: 128 FGAAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSG 187
+ A L +M R P TY ++ G + + + ++++ + P +
Sbjct: 396 YDIASKLLLQMAE-RGCKPDIVTYGILIHGLVVSGHMDDAVNMKVKLIDRGVSPDAAIY- 453
Query: 188 NDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLIS 247
+ ++ L G+ A+++F D I ++ + G EA +++ L
Sbjct: 454 -NMLMSGLCKTGRFLPAKLLFSEMLDRNILPDAYVYATLIDGFIRSGDFDEARKVFSLSV 512
Query: 248 ERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIP------------------- 288
E+G+ V + A + C+ +E + + E +P
Sbjct: 513 EKGVKVDVVHHNAMIKGFCRSGMLDEALACMNRMNEEHLVPDKFTYSTIIDGYVKQQDMA 572
Query: 289 CAMELSRFVASQ----------------CGKGKWKEVEELLSAVLDKGLLLDSFCCSSLM 332
A+++ R++ C +G +K EE + + L+ + ++L+
Sbjct: 573 TAIKIFRYMEKNKCKPNVVTYTSLINGFCCQGDFKMAEETFKEMQLRDLVPNVVTYTTLI 632
Query: 333 EYYC-SNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFK----------DGRMEEAVR 381
+ ++KA+ + K + T++ LL G K DG
Sbjct: 633 RSLAKESSTLEKAVYYWELMMTNKCVPNEVTFNCLLQGFVKKTSGKVLAEPDGSNHGQSS 692
Query: 382 IF-DYMKELKVVSSSSFVIVVSR----LCHLKELRKAMKNHDEMLKMGHKPDEATYKQVI 436
+F ++ +K S + LC ++ A D+M+K G PD ++ ++
Sbjct: 693 LFSEFFHRMKSDGWSDHAAAYNSALVCLCVHGMVKTACMFQDKMVKKGFSPDPVSFAAIL 752
Query: 437 SGF 439
GF
Sbjct: 753 HGF 755
Score = 39.3 bits (90), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 70/370 (18%), Positives = 134/370 (36%), Gaps = 63/370 (17%)
Query: 42 GFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSGKFE-- 99
G P + N L+ L + A L+ M+ + P+ + ++ + RSG F+
Sbjct: 445 GVSPDAAIYNMLMSGLCKTGRFLPAKLLFSEMLDRNILPDAYVYATLIDGFIRSGDFDEA 504
Query: 100 -VVLGL-LDSGIYSSVMY-NLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILD 156
V L ++ G+ V++ N +I + + G A +N M N +L P TYS+I+D
Sbjct: 505 RKVFSLSVEKGVKVDVVHHNAMIKGFCRSGMLDEALACMNRM-NEEHLVPDKFTYSTIID 563
Query: 157 GARRYEKTEVSDRIVGLMVEKKLLPK---------HFLSGNDY----------------- 190
G + + + +I M + K P F D+
Sbjct: 564 GYVKQQDMATAIKIFRYMEKNKCKPNVVTYTSLINGFCCQGDFKMAEETFKEMQLRDLVP 623
Query: 191 -------VIQKLSDMGKT-----YAAEMIFKRACDEKIELQDDTCGCMLKAL-------- 230
+I+ L+ T Y E++ C + T C+L+
Sbjct: 624 NVVTYTTLIRSLAKESSTLEKAVYYWELMMTNKCVP----NEVTFNCLLQGFVKKTSGKV 679
Query: 231 ------SKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVER 284
S G+ + +H + G + + Y + + LC + C +V++
Sbjct: 680 LAEPDGSNHGQSSLFSEFFHRMKSDGWSDHAAAYNSALVCLCVHGMVKTACMFQDKMVKK 739
Query: 285 GYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQI-DK 343
G+ P + + + C G K+ + L + L + S ++E + I +
Sbjct: 740 GFSPDPVSFAAILHGFCVVGNSKQWRNMDFCNLGEKGLEVAVRYSQVLEQHLPQPVICEA 799
Query: 344 AIALHIKIEK 353
+ LH +EK
Sbjct: 800 STILHAMVEK 809
Score = 34.7 bits (78), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 66/136 (48%), Gaps = 2/136 (1%)
Query: 306 WKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSL-DVATYD 364
+ E+E++L + ++ + L S ++ Y + + KA+ ++ + +L S+ DV +
Sbjct: 115 FNEIEDVLGNLRNENVKLTHEALSHVLHAYAESGSLSKAVEIYDYVVELYDSVPDVIACN 174
Query: 365 VLLDGLFKDGRMEEAVRIFDYMKEL-KVVSSSSFVIVVSRLCHLKELRKAMKNHDEMLKM 423
LL L K R+ +A +++D M + V + S I+V +C+ ++ K +
Sbjct: 175 SLLSLLVKSRRLGDARKVYDEMCDRGDSVDNYSTCILVKGMCNEGKVEVGRKLIEGRWGK 234
Query: 424 GHKPDEATYKQVISGF 439
G P+ Y +I G+
Sbjct: 235 GCIPNIVFYNTIIGGY 250
>sp|Q9LVD3|PP434_ARATH Pentatricopeptide repeat-containing protein At5g57250,
mitochondrial OS=Arabidopsis thaliana GN=At5g57250 PE=2
SV=2
Length = 971
Score = 105 bits (263), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 99/398 (24%), Positives = 174/398 (43%), Gaps = 22/398 (5%)
Query: 22 YSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPN 81
Y G +D L R M G V + + L+D L ++ + A L G M+++GV PN
Sbjct: 252 YFKGGALVDALMQDREMVEKGMNRDVVSYSILIDGLSKEGNVEEALGLLGKMIKEGVEPN 311
Query: 82 KFTWSLVAQILCRSGKFEVVLGL----LDSGI-YSSVMYNLVIDFYSKKGDFGAAFDRLN 136
T++ + + LC+ GK E L L GI +Y +ID +KG+ AF L
Sbjct: 312 LITYTAIIRGLCKMGKLEEAFVLFNRILSVGIEVDEFLYVTLIDGICRKGNLNRAFSMLG 371
Query: 137 EMCNGRNLTPGFSTYSSILDG----ARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVI 192
+M R + P TY+++++G R E EVS +VG ++ L ++ +
Sbjct: 372 DM-EQRGIQPSILTYNTVINGLCMAGRVSEADEVSKGVVGDVITYSTLLDSYIK-----V 425
Query: 193 QKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGIT 252
Q + A I +R + KI + C +LKA G EA +Y + E +T
Sbjct: 426 QNID------AVLEIRRRFLEAKIPMDLVMCNILLKAFLLMGAYGEADALYRAMPEMDLT 479
Query: 253 VRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEEL 312
+ Y + CK Q EE + ++ + + A+ +R + + C KG E+
Sbjct: 480 PDTATYATMIKGYCKTGQIEEALEMFNEL-RKSSVSAAVCYNRIIDALCKKGMLDTATEV 538
Query: 313 LSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFK 372
L + +KGL LD +L+ +N + L +E+L + + + + L K
Sbjct: 539 LIELWEKGLYLDIHTSRTLLHSIHANGGDKGILGLVYGLEQLNSDVCLGMLNDAILLLCK 598
Query: 373 DGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLKEL 410
G E A+ ++ M+ + + I+ + + +L+ L
Sbjct: 599 RGSFEAAIEVYMIMRRKGLTVTFPSTILKTLVDNLRSL 636
Score = 90.5 bits (223), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 107/458 (23%), Positives = 196/458 (42%), Gaps = 39/458 (8%)
Query: 8 RDSQSDALSLVLDCYSHKGLF------------------MD-GLEVYRMMRV----YGFV 44
RD S L ++ DC + G F MD +EV MM Y F
Sbjct: 111 RDDPSKGLLILRDCLRNHGAFPSSLTFCSLIYRFVEKGEMDNAIEVLEMMTNKNVNYPFD 170
Query: 45 PAVSACNALLDALYRQNEIRLASCLYGAMVRDGV-SPNKFTWSLVAQILCRSGKFEVVLG 103
V C+A++ + + LA + + V GV PN T++ + LC+ GK + V
Sbjct: 171 NFV--CSAVISGFCKIGKPELALGFFESAVDSGVLVPNLVTYTTLVSALCQLGKVDEVRD 228
Query: 104 LL----DSGI-YSSVMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDGA 158
L+ D G + V Y+ I Y K G A + EM + + +YS ++DG
Sbjct: 229 LVRRLEDEGFEFDCVFYSNWIHGYFKGGALVDALMQDREMVE-KGMNRDVVSYSILIDGL 287
Query: 159 RRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIEL 218
+ E + ++G M+++ + P L +I+ L MGK A ++F R IE+
Sbjct: 288 SKEGNVEEALGLLGKMIKEGVEPN--LITYTAIIRGLCKMGKLEEAFVLFNRILSVGIEV 345
Query: 219 QDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLL 278
+ ++ + ++G + A + + +RGI Y +N LC + E
Sbjct: 346 DEFLYVTLIDGICRKGNLNRAFSMLGDMEQRGIQPSILTYNTVINGLCMAGRVSEA---- 401
Query: 279 RDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSN 338
D V +G + + S + S V E+ L+ + +D C+ L++ +
Sbjct: 402 -DEVSKGVVGDVITYSTLLDSYIKVQNIDAVLEIRRRFLEAKIPMDLVMCNILLKAFLLM 460
Query: 339 RQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFV 398
+A AL+ + ++ + D ATY ++ G K G++EEA+ +F+ +++ V ++ +
Sbjct: 461 GAYGEADALYRAMPEMDLTPDTATYATMIKGYCKTGQIEEALEMFNELRKSSVSAAVCYN 520
Query: 399 IVVSRLCHLKELRKAMKNHDEMLKMGHKPDEATYKQVI 436
++ LC L A + E+ + G D T + ++
Sbjct: 521 RIIDALCKKGMLDTATEVLIELWEKGLYLDIHTSRTLL 558
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 90/400 (22%), Positives = 159/400 (39%), Gaps = 89/400 (22%)
Query: 50 CNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSGKFEVVLGLLD--- 106
CN LL A A LY AM ++P+ T++ + + C++G+ E L + +
Sbjct: 450 CNILLKAFLLMGAYGEADALYRAMPEMDLTPDTATYATMIKGYCKTGQIEEALEMFNELR 509
Query: 107 -SGIYSSVMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTE 165
S + ++V YN +ID KKG A + L E+ +EK
Sbjct: 510 KSSVSAAVCYNRIIDALCKKGMLDTATEVLIEL----------------------WEKGL 547
Query: 166 VSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGC 225
D + + LL +G D I +G Y E +L D C
Sbjct: 548 YLD----IHTSRTLLHSIHANGGDKGI-----LGLVYGLE-----------QLNSDVCLG 587
Query: 226 MLK----ALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDV 281
ML L K G + AI++Y ++ +G+TV P + L D
Sbjct: 588 MLNDAILLLCKRGSFEAAIEVYMIMRRKGLTVT---------------FPSTILKTLVDN 632
Query: 282 VERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQI 341
+ +++ + + G+ ++ + ++ GL + F +L CS
Sbjct: 633 LR------SLD-AYLLVVNAGETTLSSMDVIDYTIIINGLCKEGFLVKAL--NLCS---- 679
Query: 342 DKAIALHIKIEKLKG-SLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSS-SFVI 399
K +G +L+ TY+ L++GL + G + EA+R+FD ++ + +V S ++ I
Sbjct: 680 ---------FAKSRGVTLNTITYNSLINGLCQQGCLVEALRLFDSLENIGLVPSEVTYGI 730
Query: 400 VVSRLCHLKELRKAMKNHDEMLKMGHKPDEATYKQVISGF 439
++ LC A K D M+ G P+ Y ++ G+
Sbjct: 731 LIDNLCKEGLFLDAEKLLDSMVSKGLVPNIIIYNSIVDGY 770
Score = 66.6 bits (161), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 77/383 (20%), Positives = 154/383 (40%), Gaps = 47/383 (12%)
Query: 42 GFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSGKFEVV 101
GF P +++ + L LYR + Y + ++ N +S+V+ ++E
Sbjct: 21 GFSPTLNSIDRFLRYLYRLQKFNCILQFYSQLDSKQININHRIYSIVSWAFLNLNRYEDA 80
Query: 102 ----------------LGLLDSGIY---------------------------SSVMYNLV 118
+LDS I+ SS+ + +
Sbjct: 81 EKFINIHISKASIFPRTHMLDSLIHGFSITRDDPSKGLLILRDCLRNHGAFPSSLTFCSL 140
Query: 119 IDFYSKKGDFGAAFDRLNEMCNGRNLTPGFSTY--SSILDGARRYEKTEVSDRIVGLMVE 176
I + +KG+ A + L EM +N+ F + S+++ G + K E++ V+
Sbjct: 141 IYRFVEKGEMDNAIEVL-EMMTNKNVNYPFDNFVCSAVISGFCKIGKPELALGFFESAVD 199
Query: 177 KKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRV 236
+L + ++ ++ L +GK + +R DE E + K G +
Sbjct: 200 SGVLVPNLVTYTT-LVSALCQLGKVDEVRDLVRRLEDEGFEFDCVFYSNWIHGYFKGGAL 258
Query: 237 KEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRF 296
+A+ + E+G+ Y ++ L KE EE GLL +++ G P + +
Sbjct: 259 VDALMQDREMVEKGMNRDVVSYSILIDGLSKEGNVEEALGLLGKMIKEGVEPNLITYTAI 318
Query: 297 VASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKG 356
+ C GK +E L + +L G+ +D F +L++ C +++A ++ +E+
Sbjct: 319 IRGLCKMGKLEEAFVLFNRILSVGIEVDEFLYVTLIDGICRKGNLNRAFSMLGDMEQRGI 378
Query: 357 SLDVATYDVLLDGLFKDGRMEEA 379
+ TY+ +++GL GR+ EA
Sbjct: 379 QPSILTYNTVINGLCMAGRVSEA 401
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/247 (20%), Positives = 105/247 (42%), Gaps = 39/247 (15%)
Query: 232 KEGRVKEAIQIYHLISERGITVRDSDYY--AFVNVLCKEHQPEEVCGLLRDVVERG-YIP 288
++G + AI++ +++ + + ++ A ++ CK +PE G V+ G +P
Sbjct: 146 EKGEMDNAIEVLEMMTNKNVNYPFDNFVCSAVISGFCKIGKPELALGFFESAVDSGVLVP 205
Query: 289 CAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALH 348
+ + V++ C GK EV +L+ + D+G D S+ + Y + A+
Sbjct: 206 NLVTYTTLVSALCQLGKVDEVRDLVRRLEDEGFEFDCVFYSNWIHGYFKGGALVDALMQD 265
Query: 349 IKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYM----KELKVVSSSS-------- 396
++ + + DV +Y +L+DGL K+G +EEA+ + M E +++ ++
Sbjct: 266 REMVEKGMNRDVVSYSILIDGLSKEGNVEEALGLLGKMIKEGVEPNLITYTAIIRGLCKM 325
Query: 397 ------------------------FVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDEATY 432
+V ++ +C L +A +M + G +P TY
Sbjct: 326 GKLEEAFVLFNRILSVGIEVDEFLYVTLIDGICRKGNLNRAFSMLGDMEQRGIQPSILTY 385
Query: 433 KQVISGF 439
VI+G
Sbjct: 386 NTVINGL 392
Score = 59.3 bits (142), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 80/164 (48%)
Query: 216 IELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVC 275
+ L T ++ L ++G + EA++++ + G+ + Y ++ LCKE +
Sbjct: 686 VTLNTITYNSLINGLCQQGCLVEALRLFDSLENIGLVPSEVTYGILIDNLCKEGLFLDAE 745
Query: 276 GLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYY 335
LL +V +G +P + + V C G+ ++ ++S + + D+F SS+++ Y
Sbjct: 746 KLLDSMVSKGLVPNIIIYNSIVDGYCKLGQTEDAMRVVSRKMMGRVTPDAFTVSSMIKGY 805
Query: 336 CSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEA 379
C +++A+++ + + S D + L+ G GRMEEA
Sbjct: 806 CKKGDMEEALSVFTEFKDKNISADFFGFLFLIKGFCTKGRMEEA 849
Score = 52.0 bits (123), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 70/322 (21%), Positives = 136/322 (42%), Gaps = 34/322 (10%)
Query: 16 SLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVR 75
+++++ +G + L + + G N+L++ L +Q + A L+ ++
Sbjct: 659 TIIINGLCKEGFLVKALNLCSFAKSRGVTLNTITYNSLINGLCQQGCLVEALRLFDSLEN 718
Query: 76 DGVSPNKFTWSLVAQILCRSGKFEVVLGLLDSGIYSS-----VMYNLVIDFYSKKGDFGA 130
G+ P++ T+ ++ LC+ G F LLDS + ++YN ++D Y K G
Sbjct: 719 IGLVPSEVTYGILIDNLCKEGLFLDAEKLLDSMVSKGLVPNIIIYNSIVDGYCKLGQTED 778
Query: 131 AFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDY 190
A ++ GR +TP T SS++ G + E + + +K + F G +
Sbjct: 779 AMRVVSRKMMGR-VTPDAFTVSSMIKGYCKKGDMEEALSVFTEFKDKNISADFF--GFLF 835
Query: 191 VIQKLSDMGKTYAA-----EMIFKRACDEKIELQD------DTCGCMLKALSKEGRVKEA 239
+I+ G+ A EM+ + + I D ++ L L ++GRV +A
Sbjct: 836 LIKGFCTKGRMEEARGLLREMLVSESVVKLINRVDAELAESESIRGFLVELCEQGRVPQA 895
Query: 240 IQIYHLISER----GITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSR 295
I+I IS G + F+N + +E ++ ++ Y+ L
Sbjct: 896 IKILDEISSTIYPSGKNLGSYQRLQFLNDVNEE-----------EIKKKDYVHDFHSLHS 944
Query: 296 FVASQCGKGKWKEVEELLSAVL 317
V+S C GK ++ E + +VL
Sbjct: 945 TVSSLCTSGKLEQANEFVMSVL 966
>sp|Q9FLL3|PP412_ARATH Pentatricopeptide repeat-containing protein At5g41170,
mitochondrial OS=Arabidopsis thaliana GN=At5g41170 PE=2
SV=1
Length = 527
Score = 104 bits (260), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 88/411 (21%), Positives = 190/411 (46%), Gaps = 12/411 (2%)
Query: 38 MRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSGK 97
+++ G + CN L++ + ++ LAS G M++ G P+ T++ + C +
Sbjct: 98 LQIMGVSHDLYTCNLLMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNR 157
Query: 98 FEVVLGLLDS----GIYSS-VMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFSTYS 152
E + +++ GI VMY +ID K G A ++M N + P Y+
Sbjct: 158 MEEAMSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMEN-YGIRPDVVMYT 216
Query: 153 SILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRAC 212
S+++G + +D ++ M ++K+ P + + +I GK AE ++
Sbjct: 217 SLVNGLCNSGRWRDADSLLRGMTKRKIKPD--VITFNALIDAFVKEGKFLDAEELYNEMI 274
Query: 213 DEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPE 272
I T ++ EG V EA Q+++L+ +G Y + +N CK + +
Sbjct: 275 RMSIAPNIFTYTSLINGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVD 334
Query: 273 EVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLM 332
+ + ++ ++G + + + GK +E+ S ++ +G+ + + L+
Sbjct: 335 DAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLL 394
Query: 333 EYYCSNRQIDKAIALHIKIEK--LKG-SLDVATYDVLLDGLFKDGRMEEAVRIFDYMKEL 389
C N ++ KA+ + ++K + G + ++ TY+VLL GL +G++E+A+ +F+ M++
Sbjct: 395 HCLCYNGKVKKALMIFEDMQKREMDGVAPNIWTYNVLLHGLCYNGKLEKALMVFEDMRKR 454
Query: 390 KVVSSSSFVIVVSR-LCHLKELRKAMKNHDEMLKMGHKPDEATYKQVISGF 439
++ ++ + +C +++ A+ + G KP+ TY +ISG
Sbjct: 455 EMDIGIITYTIIIQGMCKAGKVKNAVNLFCSLPSKGVKPNVVTYTTMISGL 505
Score = 75.5 bits (184), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 73/367 (19%), Positives = 153/367 (41%), Gaps = 11/367 (2%)
Query: 30 DGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVA 89
+ + + M G P V ++D+L + + A L+ M G+ P+ ++ +
Sbjct: 160 EAMSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLV 219
Query: 90 QILCRSGKFE----VVLGLLDSGIYSSVM-YNLVIDFYSKKGDFGAAFDRLNEMCNGRNL 144
LC SG++ ++ G+ I V+ +N +ID + K+G F A + NEM ++
Sbjct: 220 NGLCNSGRWRDADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIR-MSI 278
Query: 145 TPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAA 204
P TY+S+++G + + ++ LM K P + +I K A
Sbjct: 279 APNIFTYTSLINGFCMEGCVDEARQMFYLMETKGCFPD--VVAYTSLINGFCKCKKVDDA 336
Query: 205 EMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNV 264
IF + + T +++ + G+ A +++ + RG+ Y ++
Sbjct: 337 MKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHC 396
Query: 265 LCKEHQPEEVCGLLRDVVER---GYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGL 321
LC + ++ + D+ +R G P + + C GK ++ + + + +
Sbjct: 397 LCYNGKVKKALMIFEDMQKREMDGVAPNIWTYNVLLHGLCYNGKLEKALMVFEDMRKREM 456
Query: 322 LLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVR 381
+ + +++ C ++ A+ L + +V TY ++ GLF++G EA
Sbjct: 457 DIGIITYTIIIQGMCKAGKVKNAVNLFCSLPSKGVKPNVVTYTTMISGLFREGLKHEAHV 516
Query: 382 IFDYMKE 388
+F MKE
Sbjct: 517 LFRKMKE 523
Score = 68.9 bits (167), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 67/318 (21%), Positives = 136/318 (42%), Gaps = 14/318 (4%)
Query: 128 FGAAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLP-KHFLS 186
F A D M R L P ++ +L+ + +K +V ++ L +++ H L
Sbjct: 53 FNEALDLFTHMVESRPL-PSIIDFTKLLNVIAKMKKFDV---VINLCDHLQIMGVSHDLY 108
Query: 187 GNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLI 246
+ ++ + Y A + E T ++ R++EA+ + + +
Sbjct: 109 TCNLLMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQM 168
Query: 247 SERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKW 306
E GI Y ++ LCK L + G P + + V C G+W
Sbjct: 169 VEMGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRW 228
Query: 307 KEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVL 366
++ + LL + + + D ++L++ + + A L+ ++ ++ + ++ TY L
Sbjct: 229 RDADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSL 288
Query: 367 LDGLFKDGRMEEAVRIFDYMKELK-----VVSSSSFVIVVSRLCHLKELRKAMKNHDEML 421
++G +G ++EA ++F Y+ E K VV+ +S +++ C K++ AMK EM
Sbjct: 289 INGFCMEGCVDEARQMF-YLMETKGCFPDVVAYTS---LINGFCKCKKVDDAMKIFYEMS 344
Query: 422 KMGHKPDEATYKQVISGF 439
+ G + TY +I GF
Sbjct: 345 QKGLTGNTITYTTLIQGF 362
Score = 58.9 bits (141), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 76/171 (44%), Gaps = 1/171 (0%)
Query: 270 QPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCS 329
Q E L +VE +P ++ ++ + K+ V L + G+ D + C+
Sbjct: 52 QFNEALDLFTHMVESRPLPSIIDFTKLLNVIAKMKKFDVVINLCDHLQIMGVSHDLYTCN 111
Query: 330 SLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKEL 389
LM +C + Q A + K+ KL D+ T+ L++G RMEEA+ + + M E+
Sbjct: 112 LLMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEM 171
Query: 390 KVVSSSS-FVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDEATYKQVISGF 439
+ + ++ LC + A+ D+M G +PD Y +++G
Sbjct: 172 GIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGL 222
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/212 (21%), Positives = 93/212 (43%), Gaps = 11/212 (5%)
Query: 235 RVKEAIQIY-HLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDV----VERGYIPC 289
+ EA+ ++ H++ R + D+ +NV+ K + + V L + V C
Sbjct: 52 QFNEALDLFTHMVESRPLP-SIIDFTKLLNVIAKMKKFDVVINLCDHLQIMGVSHDLYTC 110
Query: 290 AMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHI 349
+ ++ F C + L ++ G D +SL+ +C ++++A+++
Sbjct: 111 NLLMNCF----CQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVN 166
Query: 350 KIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSS-FVIVVSRLCHLK 408
++ ++ DV Y ++D L K+G + A+ +FD M+ + + +V+ LC+
Sbjct: 167 QMVEMGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSG 226
Query: 409 ELRKAMKNHDEMLKMGHKPDEATYKQVISGFM 440
R A M K KPD T+ +I F+
Sbjct: 227 RWRDADSLLRGMTKRKIKPDVITFNALIDAFV 258
Score = 33.1 bits (74), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 46/242 (19%), Positives = 103/242 (42%), Gaps = 9/242 (3%)
Query: 18 VLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDG 77
+++ + +G + +++ +M G P V A +L++ + ++ A ++ M + G
Sbjct: 288 LINGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKG 347
Query: 78 VSPNKFTWSLVAQILCRSGKF----EVVLGLLDSGIYSSV-MYNLVIDFYSKKGDFGAAF 132
++ N T++ + Q + GK EV ++ G+ ++ YN+++ G A
Sbjct: 348 LTGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKAL 407
Query: 133 DRLNEMCNGR--NLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDY 190
+M + P TY+ +L G K E + + M ++++ +
Sbjct: 408 MIFEDMQKREMDGVAPNIWTYNVLLHGLCYNGKLEKALMVFEDMRKREM--DIGIITYTI 465
Query: 191 VIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERG 250
+IQ + GK A +F + ++ T M+ L +EG EA ++ + E G
Sbjct: 466 IIQGMCKAGKVKNAVNLFCSLPSKGVKPNVVTYTTMISGLFREGLKHEAHVLFRKMKEDG 525
Query: 251 IT 252
++
Sbjct: 526 VS 527
>sp|Q9LN69|PPR50_ARATH Putative pentatricopeptide repeat-containing protein At1g19290
OS=Arabidopsis thaliana GN=At1g19290 PE=3 SV=2
Length = 904
Score = 104 bits (260), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 106/436 (24%), Positives = 189/436 (43%), Gaps = 24/436 (5%)
Query: 17 LVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRD 76
++L Y+ KGL + L V+ M YG +P++ +CN+LL L R+ E +A +Y M+
Sbjct: 160 MILKVYAEKGLVKNALHVFDNMGNYGRIPSLLSCNSLLSNLVRKGENFVALHVYDQMISF 219
Query: 77 GVSPNKFTWSLVAQILCRSGKF----------EVVLGLLDSGIYSSVMYNLVIDFYSKKG 126
VSP+ FT S+V CRSG E LGL + V YN +I+ Y+ G
Sbjct: 220 EVSPDVFTCSIVVNAYCRSGNVDKAMVFAKETESSLGLE----LNVVTYNSLINGYAMIG 275
Query: 127 DFGAAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLS 186
D R+ + + R ++ TY+S++ G + E ++ + L+ EKKL+ +
Sbjct: 276 DV-EGMTRVLRLMSERGVSRNVVTYTSLIKGYCKKGLMEEAEHVFELLKEKKLVADQHMY 334
Query: 187 GNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLI 246
G ++ G+ A + + + C ++ K G++ EA QI+ +
Sbjct: 335 G--VLMDGYCRTGQIRDAVRVHDNMIEIGVRTNTTICNSLINGYCKSGQLVEAEQIFSRM 392
Query: 247 SERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKW 306
++ + Y V+ C+ +E L + ++ +P M + + G +
Sbjct: 393 NDWSLKPDHHTYNTLVDGYCRAGYVDEALKLCDQMCQKEVVPTVMTYNILLKGYSRIGAF 452
Query: 307 KEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVL 366
+V L +L +G+ D CS+L+E ++A+ L + D T +V+
Sbjct: 453 HDVLSLWKMMLKRGVNADEISCSTLLEALFKLGDFNEAMKLWENVLARGLLTDTITLNVM 512
Query: 367 LDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCH----LKELRKAMKNHDEMLK 422
+ GL K ++ EA I D + + V L H + L++A + M +
Sbjct: 513 ISGLCKMEKVNEAKEILD---NVNIFRCKPAVQTYQALSHGYYKVGNLKEAFAVKEYMER 569
Query: 423 MGHKPDEATYKQVISG 438
G P Y +ISG
Sbjct: 570 KGIFPTIEMYNTLISG 585
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 95/471 (20%), Positives = 185/471 (39%), Gaps = 54/471 (11%)
Query: 17 LVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRD 76
+++D Y G D + V+ M G + CN+L++ + ++ A ++ M
Sbjct: 336 VLMDGYCRTGQIRDAVRVHDNMIEIGVRTNTTICNSLINGYCKSGQLVEAEQIFSRMNDW 395
Query: 77 GVSPNKFTWSLVAQILCRSGKFEVVLGLLDS----GIYSSVM-YNLVIDFYSKKGDFGAA 131
+ P+ T++ + CR+G + L L D + +VM YN+++ YS+ G F
Sbjct: 396 SLKPDHHTYNTLVDGYCRAGYVDEALKLCDQMCQKEVVPTVMTYNILLKGYSRIGAFHDV 455
Query: 132 FDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGN--- 188
L +M R + + S++L+ + + D + + + +L + L+
Sbjct: 456 LS-LWKMMLKRGVNADEISCSTLLEALFK-----LGDFNEAMKLWENVLARGLLTDTITL 509
Query: 189 DYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISE 248
+ +I L M K A+ I + + T + K G +KEA + +
Sbjct: 510 NVMISGLCKMEKVNEAKEILDNVNIFRCKPAVQTYQALSHGYYKVGNLKEAFAVKEYMER 569
Query: 249 RGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKE 308
+GI Y ++ K +V L+ ++ RG P + C G +
Sbjct: 570 KGIFPTIEMYNTLISGAFKYRHLNKVADLVIELRARGLTPTVATYGALITGWCNIGMIDK 629
Query: 309 VEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKI----------------- 351
+++KG+ L+ CS + +ID+A L KI
Sbjct: 630 AYATCFEMIEKGITLNVNICSKIANSLFRLDKIDEACLLLQKIVDFDLLLPGYQSLKEFL 689
Query: 352 ----------EKLKGSLDVAT-----------YDVLLDGLFKDGRMEEAVRIF-DYMKEL 389
+K+ S++ +T Y+V + GL K G++E+A ++F D +
Sbjct: 690 EASATTCLKTQKIAESVENSTPKKLLVPNNIVYNVAIAGLCKAGKLEDARKLFSDLLSSD 749
Query: 390 KVVSSS-SFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDEATYKQVISGF 439
+ + ++ I++ ++ KA DEM G P+ TY +I G
Sbjct: 750 RFIPDEYTYTILIHGCAIAGDINKAFTLRDEMALKGIIPNIVTYNALIKGL 800
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 94/430 (21%), Positives = 180/430 (41%), Gaps = 59/430 (13%)
Query: 16 SLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVR 75
+++L YS G F D L +++MM G +C+ LL+AL++ + A L+ ++
Sbjct: 440 NILLKGYSRIGAFHDVLSLWKMMLKRGVNADEISCSTLLEALFKLGDFNEAMKLWENVLA 499
Query: 76 DGVSPNKFTWSLVAQILCRSGKFEVVLGLLDS-GIY----SSVMYNLVIDFYSKKGDFGA 130
G+ + T +++ LC+ K +LD+ I+ + Y + Y K G+
Sbjct: 500 RGLLTDTITLNVMISGLCKMEKVNEAKEILDNVNIFRCKPAVQTYQALSHGYYKVGNLKE 559
Query: 131 AFDRLNEMCNGRNLTPGFSTYSSILDGARRYEK-TEVSDRIVGLMVEKKLLPKHFLSGND 189
AF + E + + P Y++++ GA +Y +V+D ++ L + L P G
Sbjct: 560 AF-AVKEYMERKGIFPTIEMYNTLISGAFKYRHLNKVADLVIELRA-RGLTPTVATYGA- 616
Query: 190 YVIQKLSDMG---KTYAA--EMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYH 244
+I ++G K YA EMI ++ I L + C + +L + ++ EA +
Sbjct: 617 -LITGWCNIGMIDKAYATCFEMI-----EKGITLNVNICSKIANSLFRLDKIDEACLLLQ 670
Query: 245 LISERGI---------------------------TVRDSD-----------YYAFVNVLC 266
I + + +V +S Y + LC
Sbjct: 671 KIVDFDLLLPGYQSLKEFLEASATTCLKTQKIAESVENSTPKKLLVPNNIVYNVAIAGLC 730
Query: 267 KEHQPEEVCGLLRDVVERG-YIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDS 325
K + E+ L D++ +IP + + G + L + KG++ +
Sbjct: 731 KAGKLEDARKLFSDLLSSDRFIPDEYTYTILIHGCAIAGDINKAFTLRDEMALKGIIPNI 790
Query: 326 FCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDY 385
++L++ C +D+A L K+ + + + TY+ L+DGL K G + EA+R+ +
Sbjct: 791 VTYNALIKGLCKLGNVDRAQRLLHKLPQKGITPNAITYNTLIDGLVKSGNVAEAMRLKEK 850
Query: 386 MKELKVVSSS 395
M E +V S
Sbjct: 851 MIEKGLVRGS 860
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 66/153 (43%), Gaps = 37/153 (24%)
Query: 324 DSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKG--------------------------- 356
D F CS ++ YC + +DKA+ + E G
Sbjct: 224 DVFTCSIVVNAYCRSGNVDKAMVFAKETESSLGLELNVVTYNSLINGYAMIGDVEGMTRV 283
Query: 357 ---------SLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSS-FVIVVSRLCH 406
S +V TY L+ G K G MEEA +F+ +KE K+V+ + +++ C
Sbjct: 284 LRLMSERGVSRNVVTYTSLIKGYCKKGLMEEAEHVFELLKEKKLVADQHMYGVLMDGYCR 343
Query: 407 LKELRKAMKNHDEMLKMGHKPDEATYKQVISGF 439
++R A++ HD M+++G + + +I+G+
Sbjct: 344 TGQIRDAVRVHDNMIEIGVRTNTTICNSLINGY 376
>sp|Q9SAA6|PPR34_ARATH Pentatricopeptide repeat-containing protein At1g11710,
mitochondrial OS=Arabidopsis thaliana GN=At1g11710 PE=2
SV=1
Length = 657
Score = 104 bits (259), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 106/411 (25%), Positives = 184/411 (44%), Gaps = 56/411 (13%)
Query: 1 MIQSCEGRDSQSDALSLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQ 60
+I+S + S D ++ + G EV R GF +V A N + L
Sbjct: 137 LIRSYQACGSSPDVFDSLVRACTQNGDAQGAYEVIEQTRAEGFCVSVHALNNFMGCLLNV 196
Query: 61 NEIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSGK-FE---VVLGLLDSGIYSSVM-Y 115
NEI +Y M G N T++LV C+ K FE V +L G++ +V+ +
Sbjct: 197 NEIDRFWKVYKEMDSLGYVENVNTFNLVIYSFCKESKLFEALSVFYRMLKCGVWPNVVSF 256
Query: 116 NLVIDFYSKKGDFGAAFDRLNE--MCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGL 173
N++ID K GD A L + M +G ++P TY+S+++G + + ++++RI G
Sbjct: 257 NMMIDGACKTGDMRFALQLLGKMGMMSGNFVSPNAVTYNSVINGFCKAGRLDLAERIRGD 316
Query: 174 MVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKE 233
MV+ SG D C+E+ T G ++ A +
Sbjct: 317 MVK---------SGVD----------------------CNER------TYGALVDAYGRA 339
Query: 234 GRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMEL 293
G EA+++ ++ +G+ V Y + V L E E +LRD+ + M++
Sbjct: 340 GSSDEALRLCDEMTSKGLVVNTVIYNSIVYWLFMEGDIEGAMSVLRDMNSKN-----MQI 394
Query: 294 SRF-----VASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALH 348
RF V C G KE E + +K L+ D C ++LM ++ ++++ A +
Sbjct: 395 DRFTQAIVVRGLCRNGYVKEAVEFQRQISEKKLVEDIVCHNTLMHHFVRDKKLACADQIL 454
Query: 349 IKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVI 399
+ SLD ++ L+DG K+G++E A+ I+D M +K+ +S+ VI
Sbjct: 455 GSMLVQGLSLDAISFGTLIDGYLKEGKLERALEIYDGM--IKMNKTSNLVI 503
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 75/352 (21%), Positives = 150/352 (42%), Gaps = 20/352 (5%)
Query: 45 PAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSGKFEVVLGL 104
P N++++ + + LA + G MV+ GV N+ T+ + R+G + L L
Sbjct: 289 PNAVTYNSVINGFCKAGRLDLAERIRGDMVKSGVDCNERTYGALVDAYGRAGSSDEALRL 348
Query: 105 LDSG-----IYSSVMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDGAR 159
D + ++V+YN ++ + +GD A L +M N +N+ T + ++ G
Sbjct: 349 CDEMTSKGLVVNTVIYNSIVYWLFMEGDIEGAMSVLRDM-NSKNMQIDRFTQAIVVRGLC 407
Query: 160 RYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQ 219
R + + + EKKL+ + ++ ++ K A+ I + + L
Sbjct: 408 RNGYVKEAVEFQRQISEKKLVED--IVCHNTLMHHFVRDKKLACADQILGSMLVQGLSLD 465
Query: 220 DDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLR 279
+ G ++ KEG+++ A++IY + + T Y + VN L K + G
Sbjct: 466 AISFGTLIDGYLKEGKLERALEIYDGMIKMNKTSNLVIYNSIVNGLSKRG----MAGAAE 521
Query: 280 DVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVL----DKGLLLDSFCCSSLMEYY 335
VV I + + + G +E +++LS + +K + L +F + ++ +
Sbjct: 522 AVVNAMEIKDIVTYNTLLNESLKTGNVEEADDILSKMQKQDGEKSVSLVTF--NIMINHL 579
Query: 336 CSNRQIDKAIALHIKIEKLKGSL-DVATYDVLLDGLFKDGRMEEAVRIFDYM 386
C +KA + +K +G + D TY L+ K E+ V + DY+
Sbjct: 580 CKFGSYEKAKEV-LKFMVERGVVPDSITYGTLITSFSKHRSQEKVVELHDYL 630
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 72/333 (21%), Positives = 140/333 (42%), Gaps = 26/333 (7%)
Query: 1 MIQSCEGRDSQSDALSLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQ 60
M++S G D ++D Y G + L + M G V N+++ L+ +
Sbjct: 317 MVKS--GVDCNERTYGALVDAYGRAGSSDEALRLCDEMTSKGLVVNTVIYNSIVYWLFME 374
Query: 61 NEIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSG----KFEVVLGLLDSGIYSSVM-Y 115
+I A + M + ++FT ++V + LCR+G E + + + ++ +
Sbjct: 375 GDIEGAMSVLRDMNSKNMQIDRFTQAIVVRGLCRNGYVKEAVEFQRQISEKKLVEDIVCH 434
Query: 116 NLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFS----TYSSILDGARRYEKTEVSDRIV 171
N ++ + + A L M L G S ++ +++DG + K E + I
Sbjct: 435 NTLMHHFVRDKKLACADQILGSM-----LVQGLSLDAISFGTLIDGYLKEGKLERALEIY 489
Query: 172 GLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDD-TCGCMLKAL 230
M+ K+ L + ++ LS G AAE + +E++D T +L
Sbjct: 490 DGMI--KMNKTSNLVIYNSIVNGLSKRGMAGAAEAVVN-----AMEIKDIVTYNTLLNES 542
Query: 231 SKEGRVKEAIQIYHLISERG--ITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIP 288
K G V+EA I + ++ +V + +N LCK E+ +L+ +VERG +P
Sbjct: 543 LKTGNVEEADDILSKMQKQDGEKSVSLVTFNIMINHLCKFGSYEKAKEVLKFMVERGVVP 602
Query: 289 CAMELSRFVASQCGKGKWKEVEELLSAVLDKGL 321
++ + S ++V EL ++ +G+
Sbjct: 603 DSITYGTLITSFSKHRSQEKVVELHDYLILQGV 635
>sp|Q0WPZ6|PP158_ARATH Pentatricopeptide repeat-containing protein At2g17140
OS=Arabidopsis thaliana GN=At2g17140 PE=2 SV=1
Length = 874
Score = 103 bits (257), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 109/473 (23%), Positives = 199/473 (42%), Gaps = 69/473 (14%)
Query: 34 VYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILC 93
+Y+ M + G P N L+ AL + + A L+ M G PN+FT+ ++ + C
Sbjct: 134 LYKDMVLCGIAPQTYTFNLLIRALCDSSCVDAARELFDEMPEKGCKPNEFTFGILVRGYC 193
Query: 94 RSGKFEVVLGLLDS----GIYSS-VMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGF 148
++G + L LL++ G+ + V+YN ++ + ++G + +++ E L P
Sbjct: 194 KAGLTDKGLELLNAMESFGVLPNKVIYNTIVSSFCREGRNDDS-EKMVEKMREEGLVPDI 252
Query: 149 STYSS----------ILDGARRYEKTEVSDRI-------------------VGLMVEKKL 179
T++S +LD +R + E+ + + VGL+ + K
Sbjct: 253 VTFNSRISALCKEGKVLDASRIFSDMELDEYLGLPRPNSITYNLMLKGFCKVGLLEDAKT 312
Query: 180 LPKHFLSGNDYV--------IQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALS 231
L + +D +Q L GK AE + K+ D+ I + ++ L
Sbjct: 313 LFESIRENDDLASLQSYNIWLQGLVRHGKFIEAETVLKQMTDKGIGPSIYSYNILMDGLC 372
Query: 232 KEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAM 291
K G + +A I L+ G+ Y ++ C + + LL++++ +P A
Sbjct: 373 KLGMLSDAKTIVGLMKRNGVCPDAVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAY 432
Query: 292 ELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKI 351
+ + S G+ E EELL + +KG LD+ C+ +++ C + ++DKAI + +K
Sbjct: 433 TCNILLHSLWKMGRISEAEELLRKMNEKGYGLDTVTCNIIVDGLCGSGELDKAIEI-VKG 491
Query: 352 EKLKGSL------------------------DVATYDVLLDGLFKDGRMEEAVRIF-DYM 386
++ GS D+ TY LL+GL K GR EA +F + M
Sbjct: 492 MRVHGSAALGNLGNSYIGLVDDSLIENNCLPDLITYSTLLNGLCKAGRFAEAKNLFAEMM 551
Query: 387 KELKVVSSSSFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDEATYKQVISGF 439
E S ++ I + C ++ A + +M K G TY +I G
Sbjct: 552 GEKLQPDSVAYNIFIHHFCKQGKISSAFRVLKDMEKKGCHKSLETYNSLILGL 604
Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 101/456 (22%), Positives = 197/456 (43%), Gaps = 38/456 (8%)
Query: 18 VLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRD- 76
++ + +G D ++ MR G VP + N+ + AL ++ ++ AS ++ M D
Sbjct: 223 IVSSFCREGRNDDSEKMVEKMREEGLVPDIVTFNSRISALCKEGKVLDASRIFSDMELDE 282
Query: 77 --GVS-PNKFTWSLVAQILCRSGKFEVVLGLLDS-----GIYSSVMYNLVIDFYSKKGDF 128
G+ PN T++L+ + C+ G E L +S + S YN+ + + G F
Sbjct: 283 YLGLPRPNSITYNLMLKGFCKVGLLEDAKTLFESIRENDDLASLQSYNIWLQGLVRHGKF 342
Query: 129 GAAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGN 188
A L +M + + + P +Y+ ++DG + + IVGLM + P G
Sbjct: 343 IEAETVLKQMTD-KGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVCPDAVTYG- 400
Query: 189 DYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISE 248
++ +GK AA+ + + TC +L +L K GR+ EA ++ ++E
Sbjct: 401 -CLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSLWKMGRISEAEELLRKMNE 459
Query: 249 RGITVRDSDYYAFVNVLCKEHQPEEVC----------------------GLLRD-VVERG 285
+G + V+ LC + ++ GL+ D ++E
Sbjct: 460 KGYGLDTVTCNIIVDGLCGSGELDKAIEIVKGMRVHGSAALGNLGNSYIGLVDDSLIENN 519
Query: 286 YIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAI 345
+P + S + C G++ E + L + ++ + L DS + + ++C +I A
Sbjct: 520 CLPDLITYSTLLNGLCKAGRFAEAKNLFAEMMGEKLQPDSVAYNIFIHHFCKQGKISSAF 579
Query: 346 ALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSS--SFVIVVSR 403
+ +EK + TY+ L+ GL ++ E + D MKE K +S + ++ +
Sbjct: 580 RVLKDMEKKGCHKSLETYNSLILGLGIKNQIFEIHGLMDEMKE-KGISPNICTYNTAIQY 638
Query: 404 LCHLKELRKAMKNHDEMLKMGHKPDEATYKQVISGF 439
LC +++ A DEM++ P+ ++K +I F
Sbjct: 639 LCEGEKVEDATNLLDEMMQKNIAPNVFSFKYLIEAF 674
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 101/418 (24%), Positives = 169/418 (40%), Gaps = 63/418 (15%)
Query: 44 VPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSGKF----E 99
+P CN LL +L++ I A L M G + T +++ LC SG+ E
Sbjct: 428 LPNAYTCNILLHSLWKMGRISEAEELLRKMNEKGYGLDTVTCNIIVDGLCGSGELDKAIE 487
Query: 100 VVLGLLDSGIYSSVMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDGAR 159
+V G+ G S+ + NL + G D L E N P TYS++L+G
Sbjct: 488 IVKGMRVHG--SAALGNLGNSY------IGLVDDSLIE----NNCLPDLITYSTLLNGLC 535
Query: 160 RYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFK----RACDEK 215
+ + + + M+ +KL P + I GK +A + K + C +
Sbjct: 536 KAGRFAEAKNLFAEMMGEKLQPDSV--AYNIFIHHFCKQGKISSAFRVLKDMEKKGCHKS 593
Query: 216 IELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVC 275
+E T ++ L + ++ E + + E+GI+ Y + LC+ + E+
Sbjct: 594 LE----TYNSLILGLGIKNQIFEIHGLMDEMKEKGISPNICTYNTAIQYLCEGEKVEDAT 649
Query: 276 GLLRDVVERGYIP-------------------CAMELSRFVASQCGK------------- 303
LL +++++ P A E+ S CG+
Sbjct: 650 NLLDEMMQKNIAPNVFSFKYLIEAFCKVPDFDMAQEVFETAVSICGQKEGLYSLMFNELL 709
Query: 304 --GKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIA-LHIKIEKLKGSLDV 360
G+ + ELL AVLD+G L +F L+E C +++ A LH I++ G D
Sbjct: 710 AAGQLLKATELLEAVLDRGFELGTFLYKDLVESLCKKDELEVASGILHKMIDRGYG-FDP 768
Query: 361 ATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSS-SSFVIVVSRLCHLKELRKAMKNH 417
A ++DGL K G +EA D M E+ V ++ V +R H K+ K N+
Sbjct: 769 AALMPVIDGLGKMGNKKEANSFADKMMEMASVGEVANKVDPNARDIHQKKHNKNGGNN 826
Score = 68.6 bits (166), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 90/443 (20%), Positives = 178/443 (40%), Gaps = 33/443 (7%)
Query: 26 GLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTW 85
G F++ V + M G P++ + N L+D L + + A + G M R+GV P+ T+
Sbjct: 340 GKFIEAETVLKQMTDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVCPDAVTY 399
Query: 86 SLVAQILCRSGKFEVVLGLL-----DSGIYSSVMYNLVIDFYSKKGDFGAAFDRLNEM-- 138
+ C GK + LL ++ + ++ N+++ K G A + L +M
Sbjct: 400 GCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSLWKMGRISEAEELLRKMNE 459
Query: 139 ---------CN----GRNLTPGFSTYSSILDGARRYEKT---EVSDRIVGL----MVEKK 178
CN G + I+ G R + + + +GL ++E
Sbjct: 460 KGYGLDTVTCNIIVDGLCGSGELDKAIEIVKGMRVHGSAALGNLGNSYIGLVDDSLIENN 519
Query: 179 LLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKE 238
LP L ++ L G+ A+ +F EK++ + K+G++
Sbjct: 520 CLPD--LITYSTLLNGLCKAGRFAEAKNLFAEMMGEKLQPDSVAYNIFIHHFCKQGKISS 577
Query: 239 AIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVA 298
A ++ + ++G Y + + L ++Q E+ GL+ ++ E+G P + +
Sbjct: 578 AFRVLKDMEKKGCHKSLETYNSLILGLGIKNQIFEIHGLMDEMKEKGISPNICTYNTAIQ 637
Query: 299 SQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSL 358
C K ++ LL ++ K + + F L+E +C D A + + G
Sbjct: 638 YLCEGEKVEDATNLLDEMMQKNIAPNVFSFKYLIEAFCKVPDFDMAQEVFETAVSICGQK 697
Query: 359 DVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVI--VVSRLCHLKELRKAMKN 416
+ Y ++ + L G++ +A + + + + + +F+ +V LC EL A
Sbjct: 698 E-GLYSLMFNELLAAGQLLKATELLEAVLD-RGFELGTFLYKDLVESLCKKDELEVASGI 755
Query: 417 HDEMLKMGHKPDEATYKQVISGF 439
+M+ G+ D A VI G
Sbjct: 756 LHKMIDRGYGFDPAALMPVIDGL 778
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 76/365 (20%), Positives = 160/365 (43%), Gaps = 16/365 (4%)
Query: 88 VAQILCRSGKFEVVLGL----LDSGIYSSVMYNL--VIDFYSKKGDFGAAFDRLNEMCNG 141
+A+IL R+ E + L L S I + + +L V+ ++K AF + ++
Sbjct: 45 IARILVRAKMHEEIQELHNLILSSSIQKTKLSSLLSVVSIFAKSNHIDKAFPQF-QLVRS 103
Query: 142 R--NLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMG 199
R P Y+ +L+ + + E + MV + P+ + + +I+ L D
Sbjct: 104 RFPENKPSVYLYNLLLESCIKERRVEFVSWLYKDMVLCGIAPQTYTF--NLLIRALCDSS 161
Query: 200 KTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYY 259
AA +F ++ + + T G +++ K G + +++ + + G+ Y
Sbjct: 162 CVDAARELFDEMPEKGCKPNEFTFGILVRGYCKAGLTDKGLELLNAMESFGVLPNKVIYN 221
Query: 260 AFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAV-LD 318
V+ C+E + ++ ++ + E G +P + + +++ C +GK + + S + LD
Sbjct: 222 TIVSSFCREGRNDDSEKMVEKMREEGLVPDIVTFNSRISALCKEGKVLDASRIFSDMELD 281
Query: 319 KGLLL---DSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGR 375
+ L L +S + +++ +C ++ A L I + + +Y++ L GL + G+
Sbjct: 282 EYLGLPRPNSITYNLMLKGFCKVGLLEDAKTLFESIRENDDLASLQSYNIWLQGLVRHGK 341
Query: 376 MEEAVRIFDYMKELKVVSS-SSFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDEATYKQ 434
EA + M + + S S+ I++ LC L L A M + G PD TY
Sbjct: 342 FIEAETVLKQMTDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVCPDAVTYGC 401
Query: 435 VISGF 439
++ G+
Sbjct: 402 LLHGY 406
Score = 39.3 bits (90), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 56/132 (42%), Gaps = 7/132 (5%)
Query: 7 GRDSQSD--ALSLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIR 64
G Q D A ++ + + +G V + M G ++ N+L+ L +N+I
Sbjct: 552 GEKLQPDSVAYNIFIHHFCKQGKISSAFRVLKDMEKKGCHKSLETYNSLILGLGIKNQIF 611
Query: 65 LASCLYGAMVRDGVSPNKFTWSLVAQILCRSGKFEVVLGLLDSGIYSSVMYNL-----VI 119
L M G+SPN T++ Q LC K E LLD + ++ N+ +I
Sbjct: 612 EIHGLMDEMKEKGISPNICTYNTAIQYLCEGEKVEDATNLLDEMMQKNIAPNVFSFKYLI 671
Query: 120 DFYSKKGDFGAA 131
+ + K DF A
Sbjct: 672 EAFCKVPDFDMA 683
>sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320,
mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2
SV=1
Length = 730
Score = 103 bits (257), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 85/413 (20%), Positives = 188/413 (45%), Gaps = 10/413 (2%)
Query: 30 DGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVA 89
+ L++ M + G VP N ++ L + + I A+ + M+ G +P+ T+ +
Sbjct: 270 EALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLM 329
Query: 90 QILCRSGKFEVVLGLLDSGIYSS-VMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGF 148
LC+ G+ + L V++N +I + G A L++M + P
Sbjct: 330 NGLCKIGRVDAAKDLFYRIPKPEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDV 389
Query: 149 STYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIF 208
TY+S++ G + ++ ++ M K P + ++ +GK A +
Sbjct: 390 CTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVY--SYTILVDGFCKLGKIDEAYNVL 447
Query: 209 KRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKE 268
+ ++ C++ A KE R+ EA++I+ + +G + + ++ LC+
Sbjct: 448 NEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEV 507
Query: 269 HQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCC 328
+ + LLRD++ G + + + + + +G+ KE +L++ ++ +G LD
Sbjct: 508 DEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITY 567
Query: 329 SSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKE 388
+SL++ C ++DKA +L K+ + + + ++L++GL + G +EEAV ++ KE
Sbjct: 568 NSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAV---EFQKE 624
Query: 389 LKVVSSS----SFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDEATYKQVIS 437
+ + S+ +F +++ LC + + ++ G PD T+ ++S
Sbjct: 625 MVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMS 677
Score = 94.7 bits (234), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 89/410 (21%), Positives = 181/410 (44%), Gaps = 14/410 (3%)
Query: 37 MMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSG 96
M VY P + N +L+ L N ++A+ ++ M+ + P FT+ +V + C
Sbjct: 172 MRNVYSCEPTFKSYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKAFCAVN 231
Query: 97 KFEVVLGLL-----DSGIYSSVMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFSTY 151
+ + L LL + +SV+Y +I SK A L EM P T+
Sbjct: 232 EIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMF-LMGCVPDAETF 290
Query: 152 SSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRA 211
+ ++ G ++++ + ++V M+ + P G Y++ L +G+ AA+ +F R
Sbjct: 291 NDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYG--YLMNGLCKIGRVDAAKDLFYRI 348
Query: 212 CDEKIELQDDTCGCMLKALSKEGRVKEAIQIYH-LISERGITVRDSDYYAFVNVLCKEHQ 270
+I + + ++ GR+ +A + +++ GI Y + + KE
Sbjct: 349 PKPEIVIFN----TLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGL 404
Query: 271 PEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSS 330
+L D+ +G P + V C GK E +L+ + GL ++ +
Sbjct: 405 VGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNC 464
Query: 331 LMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIF-DYMKEL 389
L+ +C +I +A+ + ++ + DV T++ L+ GL + ++ A+ + D + E
Sbjct: 465 LISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEG 524
Query: 390 KVVSSSSFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDEATYKQVISGF 439
V ++ ++ +++ E+++A K +EM+ G DE TY +I G
Sbjct: 525 VVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGL 574
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/353 (18%), Positives = 141/353 (39%), Gaps = 43/353 (12%)
Query: 37 MMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSG 96
M+ YG VP V N+L+ +++ + LA + M G PN ++++++ C+ G
Sbjct: 379 MVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLG 438
Query: 97 KFEVVLGLL-----DSGIYSSVMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFSTY 151
K + +L D ++V +N +I + K+ A + EM + P T+
Sbjct: 439 KIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPR-KGCKPDVYTF 497
Query: 152 SSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRA 211
+S++ G L ++ + A + +
Sbjct: 498 NSLISG-------------------------------------LCEVDEIKHALWLLRDM 520
Query: 212 CDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQP 271
E + T ++ A + G +KEA ++ + + +G + + Y + + LC+ +
Sbjct: 521 ISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEV 580
Query: 272 EEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSL 331
++ L ++ G+ P + + + C G +E E ++ +G D +SL
Sbjct: 581 DKARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSL 640
Query: 332 MEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFD 384
+ C +I+ + + K++ D T++ L+ L K G + +A + D
Sbjct: 641 INGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMSWLCKGGFVYDACLLLD 693
Score = 63.2 bits (152), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 74/352 (21%), Positives = 154/352 (43%), Gaps = 13/352 (3%)
Query: 95 SGKFEVVLGLL----DSGI-YSSVMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFS 149
+G+F+ + LL D GI + ++ ++ Y K G G + EM N + P F
Sbjct: 124 NGEFKTIDRLLIQMKDEGIVFKESLFISIMRDYDKAGFPGQTTRLMLEMRNVYSCEPTFK 183
Query: 150 TYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFK 209
+Y+ +L+ +V+ + M+ +K+ P F G V++ + + +A + +
Sbjct: 184 SYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFG--VVMKAFCAVNEIDSALSLLR 241
Query: 210 RACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEH 269
++ +LSK RV EA+Q+ + G + + LCK
Sbjct: 242 DMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFD 301
Query: 270 QPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCS 329
+ E ++ ++ RG+ P + + C G+ ++L + +++ +
Sbjct: 302 RINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPKPEIVI----FN 357
Query: 330 SLMEYYCSNRQIDKAIALHIKIEKLKGSL-DVATYDVLLDGLFKDGRMEEAVRIFDYMKE 388
+L+ + ++ ++D A A+ + G + DV TY+ L+ G +K+G + A+ + M+
Sbjct: 358 TLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRN 417
Query: 389 LKVVSSS-SFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDEATYKQVISGF 439
+ S+ I+V C L ++ +A +EM G KP+ + +IS F
Sbjct: 418 KGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAF 469
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 59/291 (20%), Positives = 119/291 (40%), Gaps = 45/291 (15%)
Query: 4 SCEGRDSQSDALSLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEI 63
S +G + + ++ + + + +E++R M G P V N+L+ L +EI
Sbjct: 451 SADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEI 510
Query: 64 RLASCLYGAMVRDGVSPNKFTWSLVAQILCRSGKFEVVLGLLDSGIYSSVMYNLVIDFYS 123
+ A L M+ +GV N +V YN +I+ +
Sbjct: 511 KHALWLLRDMISEGVVAN------------------------------TVTYNTLINAFL 540
Query: 124 KKGDFGAAFDRLNEMC-NGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPK 182
++G+ A +NEM G L TY+S++ G R + + + + M+ P
Sbjct: 541 RRGEIKEARKLVNEMVFQGSPLDE--ITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPS 598
Query: 183 HFLSGNDYVIQKLSDMGKT-----YAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVK 237
+ +S N +I L G + EM+ + + + + T ++ L + GR++
Sbjct: 599 N-ISCN-ILINGLCRSGMVEEAVEFQKEMVLRGSTPDIV-----TFNSLINGLCRAGRIE 651
Query: 238 EAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIP 288
+ + ++ + GI + ++ LCK + C LL + +E G++P
Sbjct: 652 DGLTMFRKLQAEGIPPDTVTFNTLMSWLCKGGFVYDACLLLDEGIEDGFVP 702
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/225 (22%), Positives = 97/225 (43%), Gaps = 10/225 (4%)
Query: 221 DTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLL-- 278
D ++ L G K ++ + + GI ++S + + + K P + L+
Sbjct: 112 DVYQVLIGKLGANGEFKTIDRLLIQMKDEGIVFKESLFISIMRDYDKAGFPGQTTRLMLE 171
Query: 279 -RDV--VERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYY 335
R+V E + + L V+ C K ++LS + L F +M+ +
Sbjct: 172 MRNVYSCEPTFKSYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTL----FTFGVVMKAF 227
Query: 336 CSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVS-S 394
C+ +ID A++L + K + Y L+ L K R+ EA+++ + M + V +
Sbjct: 228 CAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDA 287
Query: 395 SSFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDEATYKQVISGF 439
+F V+ LC + +A K + ML G PD+ TY +++G
Sbjct: 288 ETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGL 332
Score = 40.8 bits (94), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/111 (20%), Positives = 51/111 (45%)
Query: 6 EGRDSQSDALSLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRL 65
+G + + +++++ G+ + +E + M + G P + N+L++ L R I
Sbjct: 593 DGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIED 652
Query: 66 ASCLYGAMVRDGVSPNKFTWSLVAQILCRSGKFEVVLGLLDSGIYSSVMYN 116
++ + +G+ P+ T++ + LC+ G LLD GI + N
Sbjct: 653 GLTMFRKLQAEGIPPDTVTFNTLMSWLCKGGFVYDACLLLDEGIEDGFVPN 703
>sp|P0C8Q3|PP326_ARATH Pentatricopeptide repeat-containing protein At4g19890
OS=Arabidopsis thaliana GN=At4g19890 PE=2 SV=1
Length = 701
Score = 103 bits (256), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 100/441 (22%), Positives = 185/441 (41%), Gaps = 45/441 (10%)
Query: 6 EGRDSQSDALSLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRL 65
+G S ++ VL+ GL V+ M V G VP S+ ++ +R +I+
Sbjct: 176 QGLTPSSITMNCVLEIAVELGLIEYAENVFDEMSVRGVVPDSSSYKLMVIGCFRDGKIQE 235
Query: 66 ASCLYGAMVRDGVSPNKFTWSLVAQILCRSGKFEVVLG----LLDSGIYSSVM-YNLVID 120
A M++ G P+ T +L+ LC +G + ++D G +++ + +ID
Sbjct: 236 ADRWLTGMIQRGFIPDNATCTLILTALCENGLVNRAIWYFRKMIDLGFKPNLINFTSLID 295
Query: 121 FYSKKGDFGAAFDRLNEMC-NGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKL 179
KKG AF+ L EM NG P T+++++DG + TE + R+ +V
Sbjct: 296 GLCKKGSIKQAFEMLEEMVRNG--WKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVR--- 350
Query: 180 LPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEA 239
SD TY + T M+ KE ++ A
Sbjct: 351 ----------------SD---TYKPNV--------------HTYTSMIGGYCKEDKLNRA 377
Query: 240 IQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVAS 299
++ + E+G+ + Y +N CK L+ + + G++P + + S
Sbjct: 378 EMLFSRMKEQGLFPNVNTYTTLINGHCKAGSFGRAYELMNLMGDEGFMPNIYTYNAAIDS 437
Query: 300 QCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLD 359
C K + E ELL+ GL D + L++ C I++A+A ++ K D
Sbjct: 438 LCKKSRAPEAYELLNKAFSCGLEADGVTYTILIQEQCKQNDINQALAFFCRMNKTGFEAD 497
Query: 360 VATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSS-SSFVIVVSRLCHLKELRKAMKNHD 418
+ ++L+ + +M+E+ R+F + L ++ + ++ ++S C ++ A+K
Sbjct: 498 MRLNNILIAAFCRQKKMKESERLFQLVVSLGLIPTKETYTSMISCYCKEGDIDLALKYFH 557
Query: 419 EMLKMGHKPDEATYKQVISGF 439
M + G PD TY +ISG
Sbjct: 558 NMKRHGCVPDSFTYGSLISGL 578
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 93/433 (21%), Positives = 168/433 (38%), Gaps = 57/433 (13%)
Query: 1 MIQSCEGRDSQSDALSLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQ 60
MIQ G + +L+L GL + +R M GF P + +L+D L ++
Sbjct: 243 MIQ--RGFIPDNATCTLILTALCENGLVNRAIWYFRKMIDLGFKPNLINFTSLIDGLCKK 300
Query: 61 NEIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSG----KFEVVLGLLDS--------- 107
I+ A + MVR+G PN +T + + LC+ G F + L L+ S
Sbjct: 301 GSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSDTYKPNVHT 360
Query: 108 ---------------------------GIYSSV-MYNLVIDFYSKKGDFGAAFDRLNEMC 139
G++ +V Y +I+ + K G FG A++ +N M
Sbjct: 361 YTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGSFGRAYELMNLM- 419
Query: 140 NGRNLTPGFSTYSSILDG----ARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKL 195
P TY++ +D +R E E+ ++ +E + L IQ+
Sbjct: 420 GDEGFMPNIYTYNAAIDSLCKKSRAPEAYELLNKAFSCGLEADGVTYTIL------IQEQ 473
Query: 196 SDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRD 255
A F R E ++ A ++ ++KE+ +++ L+ G+
Sbjct: 474 CKQNDINQALAFFCRMNKTGFEADMRLNNILIAAFCRQKKMKESERLFQLVVSLGLIPTK 533
Query: 256 SDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSA 315
Y + ++ CKE + ++ G +P + ++ C K E +L A
Sbjct: 534 ETYTSMISCYCKEGDIDLALKYFHNMKRHGCVPDSFTYGSLISGLCKKSMVDEACKLYEA 593
Query: 316 VLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGR 375
++D+GL +L YC ++ D A A+ I +E L L + T L+ L + +
Sbjct: 594 MIDRGLSPPEVTRVTLAYEYC--KRNDSANAM-ILLEPLDKKLWIRTVRTLVRKLCSEKK 650
Query: 376 MEEAVRIFDYMKE 388
+ A F + E
Sbjct: 651 VGVAALFFQKLLE 663
Score = 62.0 bits (149), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 46/217 (21%), Positives = 100/217 (46%), Gaps = 2/217 (0%)
Query: 225 CMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVER 284
CML+ S+ GR+ EA+ + + +G+T + + + E + ++ R
Sbjct: 152 CMLRNFSEIGRLNEAVGMVMDMQNQGLTPSSITMNCVLEIAVELGLIEYAENVFDEMSVR 211
Query: 285 GYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKA 344
G +P + V GK +E + L+ ++ +G + D+ C+ ++ C N +++A
Sbjct: 212 GVVPDSSSYKLMVIGCFRDGKIQEADRWLTGMIQRGFIPDNATCTLILTALCENGLVNRA 271
Query: 345 IALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYM-KELKVVSSSSFVIVVSR 403
I K+ L ++ + L+DGL K G +++A + + M + + + ++
Sbjct: 272 IWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDG 331
Query: 404 LCHLKELRKAMKNHDEMLKM-GHKPDEATYKQVISGF 439
LC KA + ++++ +KP+ TY +I G+
Sbjct: 332 LCKRGWTEKAFRLFLKLVRSDTYKPNVHTYTSMIGGY 368
>sp|Q3ECK2|PPR92_ARATH Pentatricopeptide repeat-containing protein At1g62680,
mitochondrial OS=Arabidopsis thaliana GN=At1g62680 PE=2
SV=2
Length = 548
Score = 102 bits (253), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 75/327 (22%), Positives = 148/327 (45%), Gaps = 8/327 (2%)
Query: 62 EIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSGKFEVVLGLLDSGI---YSS--VMYN 116
++ LA + G M++ G P++ T + CR + + L+D + Y V YN
Sbjct: 135 QVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYN 194
Query: 117 LVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVE 176
+ID K AFD E+ + + P TY+++++G + + R++ M++
Sbjct: 195 AIIDSLCKTKRVNDAFDFFKEI-ERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIK 253
Query: 177 KKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRV 236
KK+ P ++ GK A+ +F+ I+ T ++ L R+
Sbjct: 254 KKITPNVITYS--ALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRI 311
Query: 237 KEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRF 296
EA Q++ L+ +G Y +N CK + E+ L R++ +RG + + +
Sbjct: 312 DEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTL 371
Query: 297 VASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKG 356
+ G + +E S + G+ D + + L+ C N +++KA+ + ++K +
Sbjct: 372 IQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREM 431
Query: 357 SLDVATYDVLLDGLFKDGRMEEAVRIF 383
LD+ TY ++ G+ K G++EEA +F
Sbjct: 432 DLDIVTYTTVIRGMCKTGKVEEAWSLF 458
Score = 83.2 bits (204), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 102/219 (46%), Gaps = 1/219 (0%)
Query: 222 TCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDV 281
T G ++ + RV +A+ + + E G Y A ++ LCK + + +++
Sbjct: 157 TIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEI 216
Query: 282 VERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQI 341
+G P + + V C +W + LLS ++ K + + S+L++ + N ++
Sbjct: 217 ERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKV 276
Query: 342 DKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSS-SFVIV 400
+A L ++ ++ D+ TY L++GL R++EA ++FD M ++ S+ +
Sbjct: 277 LEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTL 336
Query: 401 VSRLCHLKELRKAMKNHDEMLKMGHKPDEATYKQVISGF 439
++ C K + MK EM + G + TY +I GF
Sbjct: 337 INGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGF 375
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/329 (20%), Positives = 141/329 (42%), Gaps = 8/329 (2%)
Query: 30 DGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVA 89
D + + M G+ P + A NA++D+L + + A + + R G+ PN T++ +
Sbjct: 173 DAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALV 232
Query: 90 QILCRSGKFEVVLGLLDSGIYSSVMYNLV-----IDFYSKKGDFGAAFDRLNEMCNGRNL 144
LC S ++ LL I + N++ +D + K G A + EM ++
Sbjct: 233 NGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVR-MSI 291
Query: 145 TPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAA 204
P TYSS+++G +++ + ++++ LMV K L + + +I +
Sbjct: 292 DPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLAD--VVSYNTLINGFCKAKRVEDG 349
Query: 205 EMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNV 264
+F+ + T +++ + G V +A + + + GI+ Y +
Sbjct: 350 MKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGG 409
Query: 265 LCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLD 324
LC + E+ + D+ +R + + + C GK +E L ++ KGL D
Sbjct: 410 LCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPD 469
Query: 325 SFCCSSLMEYYCSNRQIDKAIALHIKIEK 353
+++M C+ + + AL+ K+++
Sbjct: 470 IVTYTTMMSGLCTKGLLHEVEALYTKMKQ 498
Score = 69.3 bits (168), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 62/250 (24%), Positives = 107/250 (42%), Gaps = 38/250 (15%)
Query: 226 MLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERG 285
++ +L K RV +A + I +GI Y A VN LC + + LL D++++
Sbjct: 196 IIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKK 255
Query: 286 YIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAI 345
P + S + + GK E +EL ++ + D SSL+ C + +ID+A
Sbjct: 256 ITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEAN 315
Query: 346 ALHIKIEKLKGSL-DVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSS--------- 395
+ + KG L DV +Y+ L++G K R+E+ +++F M + +VS++
Sbjct: 316 QM-FDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQG 374
Query: 396 ---------------------------SFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPD 428
++ I++ LC EL KA+ ++M K D
Sbjct: 375 FFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLD 434
Query: 429 EATYKQVISG 438
TY VI G
Sbjct: 435 IVTYTTVIRG 444
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/188 (21%), Positives = 87/188 (46%), Gaps = 4/188 (2%)
Query: 256 SDYYAF---VNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEEL 312
+D Y F +N C Q +L +++ GY P + + V C + + + L
Sbjct: 118 NDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSL 177
Query: 313 LSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFK 372
+ +++ G D +++++ C ++++ A +IE+ +V TY L++GL
Sbjct: 178 VDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCN 237
Query: 373 DGRMEEAVRIFDYMKELKVVSSS-SFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDEAT 431
R +A R+ M + K+ + ++ ++ ++ +A + +EM++M PD T
Sbjct: 238 SSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVT 297
Query: 432 YKQVISGF 439
Y +I+G
Sbjct: 298 YSSLINGL 305
Score = 45.4 bits (106), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 64/133 (48%), Gaps = 7/133 (5%)
Query: 312 LLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLF 371
+L +L G D SL+ +C ++ A++L K+ ++ D+ Y+ ++D L
Sbjct: 142 ILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLC 201
Query: 372 KDGRMEEAVRIFDYMKELKV----VSSSSFVIVVSRLCHLKELRKAMKNHDEMLKMGHKP 427
K R+ +A FD+ KE++ + ++ +V+ LC+ A + +M+K P
Sbjct: 202 KTKRVNDA---FDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITP 258
Query: 428 DEATYKQVISGFM 440
+ TY ++ F+
Sbjct: 259 NVITYSALLDAFV 271
Score = 34.3 bits (77), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 52/101 (51%), Gaps = 1/101 (0%)
Query: 340 QIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSS-SSFV 398
+++ AI L + K + + ++ LL + K + + + + M+ L + + +F
Sbjct: 65 KLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFN 124
Query: 399 IVVSRLCHLKELRKAMKNHDEMLKMGHKPDEATYKQVISGF 439
IV++ C ++ A+ +MLK+G++PD T +++GF
Sbjct: 125 IVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGF 165
>sp|Q9M302|PP270_ARATH Pentatricopeptide repeat-containing protein At3g48810
OS=Arabidopsis thaliana GN=At3g48810 PE=2 SV=1
Length = 659
Score = 100 bits (250), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 101/478 (21%), Positives = 208/478 (43%), Gaps = 53/478 (11%)
Query: 6 EGRDSQSDALSLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRL 65
+G D V+ Y GL +E++ ++ +G P+V N +LD L +N I++
Sbjct: 105 QGFHCSEDLFISVISVYRQVGLAERAVEMFYRIKEFGCDPSVKIYNHVLDTLLGENRIQM 164
Query: 66 ASCLYGAMVRDGVSPNKFTWSLVAQILCRSGKFEVVLGLL----------DSGIYSSVM- 114
+Y M RDG PN FT++++ + LC++ K + LL D+ Y++V+
Sbjct: 165 IYMVYRDMKRDGFEPNVFTYNVLLKALCKNNKVDGAKKLLVEMSNKGCCPDAVSYTTVIS 224
Query: 115 ------------------------YNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFST 150
YN +I+ K+ D+ AF+ + EM + ++P +
Sbjct: 225 SMCEVGLVKEGRELAERFEPVVSVYNALINGLCKEHDYKGAFELMREMVE-KGISPNVIS 283
Query: 151 YSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSD----MGKTYAAEM 206
YS++++ + E++ + M+++ P N Y + L G T+ A
Sbjct: 284 YSTLINVLCNSGQIELAFSFLTQMLKRGCHP------NIYTLSSLVKGCFLRGTTFDALD 337
Query: 207 IFKRACDEKIELQDDTCG--CMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNV 264
++ + LQ + +++ G + +A+ ++ + E G + Y + +N
Sbjct: 338 LWNQMI-RGFGLQPNVVAYNTLVQGFCSHGNIVKAVSVFSHMEEIGCSPNIRTYGSLING 396
Query: 265 LCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLD 324
K + + ++ G P + + V + C K+KE E L+ + +
Sbjct: 397 FAKRGSLDGAVYIWNKMLTSGCCPNVVVYTNMVEALCRHSKFKEAESLIEIMSKENCAPS 456
Query: 325 SFCCSSLMEYYCSNRQIDKAIALHIKIEKL-KGSLDVATYDVLLDGLFKDGRMEEAVRIF 383
++ ++ C ++D A + ++E+ + ++ TY+ LLDGL K R+EEA +
Sbjct: 457 VPTFNAFIKGLCDAGRLDWAEKVFRQMEQQHRCPPNIVTYNELLDGLAKANRIEEAYGLT 516
Query: 384 D--YMKELKVVSSSSFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDEATYKQVISGF 439
+M+ ++ SSS++ ++ C+ A++ +M+ G PDE T +I +
Sbjct: 517 REIFMRGVE-WSSSTYNTLLHGSCNAGLPGIALQLVGKMMVDGKSPDEITMNMIILAY 573
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/261 (19%), Positives = 120/261 (45%), Gaps = 12/261 (4%)
Query: 182 KHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQ 241
KH + +I+KL+ G+ + + + ++ + +D ++ + G + A++
Sbjct: 73 KHTPLTFEVMIRKLAMDGQVDSVQYLLQQMKLQGFHCSEDLFISVISVYRQVGLAERAVE 132
Query: 242 IYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQC 301
+++ I E G Y ++ L E++ + + + RD+ G+ P + + + C
Sbjct: 133 MFYRIKEFGCDPSVKIYNHVLDTLLGENRIQMIYMVYRDMKRDGFEPNVFTYNVLLKALC 192
Query: 302 GKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVA 361
K ++LL + +KG D+ ++++ C + + L + E + V+
Sbjct: 193 KNNKVDGAKKLLVEMSNKGCCPDAVSYTTVISSMCEVGLVKEGRELAERFEPV-----VS 247
Query: 362 TYDVLLDGLFKDGRMEEAVRIFDYMKEL--KVVSSS--SFVIVVSRLCHLKELRKAMKNH 417
Y+ L++GL K+ + A F+ M+E+ K +S + S+ +++ LC+ ++ A
Sbjct: 248 VYNALINGLCKEHDYKGA---FELMREMVEKGISPNVISYSTLINVLCNSGQIELAFSFL 304
Query: 418 DEMLKMGHKPDEATYKQVISG 438
+MLK G P+ T ++ G
Sbjct: 305 TQMLKRGCHPNIYTLSSLVKG 325
Score = 32.3 bits (72), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
Query: 49 ACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSGKFEVVLGLLD 106
+CNA L + Q L G M+ DG SP++ T +++ C+ GK E +LD
Sbjct: 538 SCNAGLPGIALQ--------LVGKMMVDGKSPDEITMNMIILAYCKQGKAERAAQMLD 587
>sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900
OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1
Length = 598
Score = 100 bits (248), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 89/413 (21%), Positives = 184/413 (44%), Gaps = 12/413 (2%)
Query: 33 EVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQIL 92
++ ++ G VP V N ++ + EI A + R VSP+ T++ + + L
Sbjct: 158 KILEILEGSGAVPDVITYNVMISGYCKAGEINNA---LSVLDRMSVSPDVVTYNTILRSL 214
Query: 93 CRSGKFEVVLGLLDSGI----YSSVM-YNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPG 147
C SGK + + +LD + Y V+ Y ++I+ + G A L+EM R TP
Sbjct: 215 CDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEM-RDRGCTPD 273
Query: 148 FSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMI 207
TY+ +++G + + + + + + M P ++ +++ + G+ AE +
Sbjct: 274 VVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVIT--HNIILRSMCSTGRWMDAEKL 331
Query: 208 FKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCK 267
+ T ++ L ++G + AI I + + G Y ++ CK
Sbjct: 332 LADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCK 391
Query: 268 EHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFC 327
E + + L +V RG P + + + + C GK ++ E+L+ + KG
Sbjct: 392 EKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLIT 451
Query: 328 CSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMK 387
+++++ + KAI L ++ D TY L+ GL ++G+++EA++ F +
Sbjct: 452 YNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFE 511
Query: 388 ELKVVSSS-SFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDEATYKQVISGF 439
+ + ++ +F ++ LC ++ +A+ M+ G KP+E +Y +I G
Sbjct: 512 RMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGL 564
Score = 94.7 bits (234), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 103/435 (23%), Positives = 175/435 (40%), Gaps = 92/435 (21%)
Query: 51 NALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSGKFEVVLGLLD---- 106
N L + R E+ MV G P+ + + + CR GK +L+
Sbjct: 106 NNHLRQMVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEG 165
Query: 107 SGIYSSVM-YNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSIL----DGARRY 161
SG V+ YN++I Y K G+ A L+ M +++P TY++IL D +
Sbjct: 166 SGAVPDVITYNVMISGYCKAGEINNALSVLDRM----SVSPDVVTYNTILRSLCDSGKLK 221
Query: 162 EKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDD 221
+ EV DR M+++ P D + TY
Sbjct: 222 QAMEVLDR----MLQRDCYP-------DVI---------TYTI----------------- 244
Query: 222 TCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDV 281
+++A ++ V A+++ + +RG T Y VN +CKE + +E L D+
Sbjct: 245 ----LIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDM 300
Query: 282 VERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGL--------LLDSFCC----- 328
G P + + + S C G+W + E+LL+ +L KG +L +F C
Sbjct: 301 PSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLL 360
Query: 329 ----------------------SSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVL 366
+ L+ +C +++D+AI ++ D+ TY+ +
Sbjct: 361 GRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTM 420
Query: 367 LDGLFKDGRMEEAVRIFDYMKELKVVSSS--SFVIVVSRLCHLKELRKAMKNHDEMLKMG 424
L L KDG++E+AV I + + K S ++ V+ L + KA+K DEM
Sbjct: 421 LTALCKDGKVEDAVEILNQLSS-KGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKD 479
Query: 425 HKPDEATYKQVISGF 439
KPD TY ++ G
Sbjct: 480 LKPDTITYSSLVGGL 494
Score = 90.5 bits (223), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 90/431 (20%), Positives = 186/431 (43%), Gaps = 34/431 (7%)
Query: 26 GLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTW 85
G +G + M +G VP + C L+ R + R A+ + + G P+ T+
Sbjct: 116 GELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVITY 175
Query: 86 SLVAQILCRSGKFEVVLGLLDSGIYSS--VMYNLVIDFYSKKGDFGAAFDRLNEMCNGRN 143
+++ C++G+ L +LD S V YN ++ G A + L+ M R+
Sbjct: 176 NVMISGYCKAGEINNALSVLDRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQ-RD 234
Query: 144 LTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYA 203
P TY+ +++ R + +++ M ++ P D V + G
Sbjct: 235 CYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTP-------DVVTYNVLVNGICKE 287
Query: 204 AEMIFKRACDEKIELQDD--TCGC---------MLKALSKEGRVKEAIQIYHLISERGIT 252
+ DE I+ +D + GC +L+++ GR +A ++ + +G +
Sbjct: 288 GRL------DEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFS 341
Query: 253 VRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEEL 312
+ +N LC++ +L + + G P ++ + + C + K E
Sbjct: 342 PSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEY 401
Query: 313 LSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFK 372
L ++ +G D ++++ C + +++ A+ + ++ S + TY+ ++DGL K
Sbjct: 402 LERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAK 461
Query: 373 DGRMEEAVRIFDYM--KELK--VVSSSSFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPD 428
G+ +A+++ D M K+LK ++ SS V +SR + E A+K E +MG +P+
Sbjct: 462 AGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDE---AIKFFHEFERMGIRPN 518
Query: 429 EATYKQVISGF 439
T+ ++ G
Sbjct: 519 AVTFNSIMLGL 529
Score = 83.6 bits (205), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 78/327 (23%), Positives = 137/327 (41%), Gaps = 41/327 (12%)
Query: 38 MRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSGK 97
MR G P V N L++ + ++ + A M G PN T +++ + +C +G+
Sbjct: 265 MRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGR 324
Query: 98 F----EVVLGLLDSGIYSSVM-YNLVIDFYSKKGDFGAAFDRLNEM----CNGRNLT--- 145
+ +++ +L G SV+ +N++I+F +KG G A D L +M C +L+
Sbjct: 325 WMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNP 384
Query: 146 ---------------------------PGFSTYSSILDGARRYEKTEVSDRIVGLMVEKK 178
P TY+++L + K E + I+ + K
Sbjct: 385 LLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKG 444
Query: 179 LLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKE 238
P L + VI L+ GKT A + + ++ T ++ LS+EG+V E
Sbjct: 445 CSP--VLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDE 502
Query: 239 AIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVA 298
AI+ +H GI + + + LCK Q + L ++ RG P + +
Sbjct: 503 AIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIE 562
Query: 299 SQCGKGKWKEVEELLSAVLDKGLLLDS 325
+G KE ELL+ + +KGL+ S
Sbjct: 563 GLAYEGMAKEALELLNELCNKGLMKKS 589
>sp|Q9FMD3|PP389_ARATH Pentatricopeptide repeat-containing protein At5g16640,
mitochondrial OS=Arabidopsis thaliana GN=At5g16640 PE=2
SV=1
Length = 504
Score = 100 bits (248), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 78/355 (21%), Positives = 155/355 (43%), Gaps = 8/355 (2%)
Query: 34 VYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILC 93
++ M++ G + CN LL+ R +++ LA G M++ G P+ T+ + C
Sbjct: 103 LWEQMQMLGIPHNLCTCNILLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFC 162
Query: 94 RSGKFEVVLGLLDSGI-----YSSVMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGF 148
R + L + D + + V+YN +ID K A D LN M + P
Sbjct: 163 RGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRM-EKDGIGPDV 221
Query: 149 STYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIF 208
TY+S++ G + + R+V M ++++ P F + +I G+ AE +
Sbjct: 222 VTYNSLISGLCSSGRWSDATRMVSCMTKREIYPDVFTF--NALIDACVKEGRVSEAEEFY 279
Query: 209 KRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKE 268
+ ++ T ++ L R+ EA +++ + +G Y +N CK
Sbjct: 280 EEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKS 339
Query: 269 HQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCC 328
+ E L ++ +RG + + + + C GK EE+ ++ G+ +
Sbjct: 340 KKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITY 399
Query: 329 SSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIF 383
+ L+ C N +I+KA+ + ++K D+ TY++++ G+ K G + +A I+
Sbjct: 400 NVLLHGLCDNGKIEKALVILADMQKNGMDADIVTYNIIIRGMCKAGEVADAWDIY 454
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 82/414 (19%), Positives = 165/414 (39%), Gaps = 42/414 (10%)
Query: 30 DGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVA 89
D L+++ M +P+++ + LL A+ + + + L+ M G+ N T +++
Sbjct: 64 DSLDLFFHMVQCRPLPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILL 123
Query: 90 QILCRSGKFEVVLGLLDSGIYSSVMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFS 149
CR + + L L I K G P
Sbjct: 124 NCFCRCSQLSLALSFLGKMI--------------KLGH-----------------EPSIV 152
Query: 150 TYSSILDGA----RRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAE 205
T+ S+L+G R Y+ + D++VG+ + ++ + +I L + A
Sbjct: 153 TFGSLLNGFCRGDRVYDALYMFDQMVGMGYKPNVVIY------NTIIDGLCKSKQVDNAL 206
Query: 206 MIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVL 265
+ R + I T ++ L GR +A ++ +++R I + A ++
Sbjct: 207 DLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDAC 266
Query: 266 CKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDS 325
KE + E +++ R P + S + C + E EE+ ++ KG D
Sbjct: 267 VKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKGCFPDV 326
Query: 326 FCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDY 385
S L+ YC +++++ + L ++ + + TY +L+ G + G++ A IF
Sbjct: 327 VTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRR 386
Query: 386 MKELKVVSS-SSFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDEATYKQVISG 438
M V + ++ +++ LC ++ KA+ +M K G D TY +I G
Sbjct: 387 MVFCGVHPNIITYNVLLHGLCDNGKIEKALVILADMQKNGMDADIVTYNIIIRG 440
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/219 (21%), Positives = 99/219 (45%), Gaps = 1/219 (0%)
Query: 222 TCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDV 281
T G +L + RV +A+ ++ + G Y ++ LCK Q + LL +
Sbjct: 153 TFGSLLNGFCRGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRM 212
Query: 282 VERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQI 341
+ G P + + ++ C G+W + ++S + + + D F ++L++ ++
Sbjct: 213 EKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRV 272
Query: 342 DKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSS-SSFVIV 400
+A + ++ + D+ TY +L+ GL R++EA +F +M ++ I+
Sbjct: 273 SEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSIL 332
Query: 401 VSRLCHLKELRKAMKNHDEMLKMGHKPDEATYKQVISGF 439
++ C K++ MK EM + G + TY +I G+
Sbjct: 333 INGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGY 371
Score = 37.4 bits (85), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/101 (19%), Positives = 53/101 (52%), Gaps = 1/101 (0%)
Query: 340 QIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSS-SSFV 398
++D ++ L + + + +A + LL + K + + + +++ M+ L + + +
Sbjct: 61 KLDDSLDLFFHMVQCRPLPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCN 120
Query: 399 IVVSRLCHLKELRKAMKNHDEMLKMGHKPDEATYKQVISGF 439
I+++ C +L A+ +M+K+GH+P T+ +++GF
Sbjct: 121 ILLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGF 161
Score = 32.7 bits (73), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/77 (22%), Positives = 34/77 (44%)
Query: 6 EGRDSQSDALSLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRL 65
G D+ ++++ G D ++Y + G +P + ++ LY++ R
Sbjct: 425 NGMDADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQGLMPDIWTYTTMMLGLYKKGLRRE 484
Query: 66 ASCLYGAMVRDGVSPNK 82
A L+ M DG+ PN+
Sbjct: 485 ADALFRKMKEDGILPNE 501
>sp|Q9SFV9|PP218_ARATH Pentatricopeptide repeat-containing protein At3g07290,
mitochondrial OS=Arabidopsis thaliana GN=At3g07290 PE=2
SV=1
Length = 880
Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 92/408 (22%), Positives = 167/408 (40%), Gaps = 50/408 (12%)
Query: 42 GFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSGKFEVV 101
G P+ L+ AL + I A L+ M+ G PN T++++ LCR GK E
Sbjct: 296 GCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIPRGCKPNVHTYTVLIDGLCRDGKIEEA 355
Query: 102 LG----LLDSGIYSSVM-YNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILD 156
G ++ I+ SV+ YN +I+ Y K G AF+ L M R P T++ +++
Sbjct: 356 NGVCRKMVKDRIFPSVITYNALINGYCKDGRVVPAFELLTVM-EKRACKPNVRTFNELME 414
Query: 157 GARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKI 216
G L +GK Y A + KR D +
Sbjct: 415 G-------------------------------------LCRVGKPYKAVHLLKRMLDNGL 437
Query: 217 ELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSD---YYAFVNVLCKEHQPEE 273
+ ++ L +EG + A Y L+S + D + A +N CK+ + +
Sbjct: 438 SPDIVSYNVLIDGLCREGHMNTA---YKLLSSMNCFDIEPDCLTFTAIINAFCKQGKADV 494
Query: 274 VCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLME 333
L ++ +G + + + C GK ++ +L ++ +L + +++
Sbjct: 495 ASAFLGLMLRKGISLDEVTGTTLIDGVCKVGKTRDALFILETLVKMRILTTPHSLNVILD 554
Query: 334 YYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVS 393
++ + +A+ KI KL V TY L+DGL + G + + RI + MK +
Sbjct: 555 MLSKGCKVKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDITGSFRILELMKLSGCLP 614
Query: 394 SS-SFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDEATYKQVISGFM 440
+ + I+++ LC + +A K M G P+ TY ++ G++
Sbjct: 615 NVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYV 662
Score = 89.4 bits (220), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 87/389 (22%), Positives = 167/389 (42%), Gaps = 31/389 (7%)
Query: 16 SLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVR 75
++++D +G ++ M + P A+++A +Q + +AS G M+R
Sbjct: 445 NVLIDGLCREGHMNTAYKLLSSMNCFDIEPDCLTFTAIINAFCKQGKADVASAFLGLMLR 504
Query: 76 DGVSPNKFTWSLVAQILCRSGKFEVVLGLLDSGIYSSVM-----YNLVIDFYSKKGDFGA 130
G+S ++ T + + +C+ GK L +L++ + ++ N+++D SK
Sbjct: 505 KGISLDEVTGTTLIDGVCKVGKTRDALFILETLVKMRILTTPHSLNVILDMLSKGCKVKE 564
Query: 131 AFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDY 190
L ++ N L P TY++++DG R S RI+ LM LP +
Sbjct: 565 ELAMLGKI-NKLGLVPSVVTYTTLVDGLIRSGDITGSFRILELMKLSGCLPNVY--PYTI 621
Query: 191 VIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERG 250
+I L G+ AE + D + T M+K G++ A++ + ERG
Sbjct: 622 IINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYVNNGKLDRALETVRAMVERG 681
Query: 251 ITVRDSDYYAFV-------------------NVLCKEHQPEEVCGLLRDVVERGYIPCAM 291
+ D Y + + ++ +E PE + L+ V + G C
Sbjct: 682 YELNDRIYSSLLQGFVLSQKGIDNSEESTVSDIALRETDPECINELISVVEQLG--GCIS 739
Query: 292 ELSRFVASQ-CGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIK 350
L F+ ++ C +G+ E +L+ VL++G+ L+ +ME YCS ++ K + L
Sbjct: 740 GLCIFLVTRLCKEGRTDESNDLVQNVLERGVFLEK-AMDIIMESYCSKKKHTKCMELITL 798
Query: 351 IEKLKGSLDVATYDVLLDGLFKDGRMEEA 379
+ K ++ +++ GL K+G E A
Sbjct: 799 VLKSGFVPSFKSFCLVIQGLKKEGDAERA 827
Score = 82.0 bits (201), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 110/483 (22%), Positives = 202/483 (41%), Gaps = 63/483 (13%)
Query: 16 SLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVR 75
++++D G + V R M P+V NAL++ + + A L M +
Sbjct: 340 TVLIDGLCRDGKIEEANGVCRKMVKDRIFPSVITYNALINGYCKDGRVVPAFELLTVMEK 399
Query: 76 DGVSPNKFTWSLVAQILCRSGK----FEVVLGLLDSGIYSSVM-YNLVIDFYSKKGDFGA 130
PN T++ + + LCR GK ++ +LD+G+ ++ YN++ID ++G
Sbjct: 400 RACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNT 459
Query: 131 AFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDY 190
A+ L+ M N ++ P T+++I++ + K +V+ +GLM+ K + ++G
Sbjct: 460 AYKLLSSM-NCFDIEPDCLTFTAIINAFCKQGKADVASAFLGLMLRKGISLDE-VTGTT- 516
Query: 191 VIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERG 250
+I + +GKT A I + +I + +L LSK +VKE + + I++ G
Sbjct: 517 LIDGVCKVGKTRDALFILETLVKMRILTTPHSLNVILDMLSKGCKVKEELAMLGKINKLG 576
Query: 251 IT-------------VRDSD----------------------YYAFVNVLCKEHQPEEVC 275
+ +R D Y +N LC+ + EE
Sbjct: 577 LVPSVVTYTTLVDGLIRSGDITGSFRILELMKLSGCLPNVYPYTIIINGLCQFGRVEEAE 636
Query: 276 GLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLME-Y 334
LL + + G P + + V GK E + A++++G L+ SSL++ +
Sbjct: 637 KLLSAMQDSGVSPNHVTYTVMVKGYVNNGKLDRALETVRAMVERGYELNDRIYSSLLQGF 696
Query: 335 YCSNRQIDKA-------IALHIK-----------IEKLKGSLDVATYDVLLDGLFKDGRM 376
S + ID + IAL +E+L G + L+ L K+GR
Sbjct: 697 VLSQKGIDNSEESTVSDIALRETDPECINELISVVEQLGGCIS-GLCIFLVTRLCKEGRT 755
Query: 377 EEAVRIFDYMKELKVVSSSSFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDEATYKQVI 436
+E+ + + E V + I++ C K+ K M+ +LK G P ++ VI
Sbjct: 756 DESNDLVQNVLERGVFLEKAMDIIMESYCSKKKHTKCMELITLVLKSGFVPSFKSFCLVI 815
Query: 437 SGF 439
G
Sbjct: 816 QGL 818
Score = 79.0 bits (193), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 81/380 (21%), Positives = 164/380 (43%), Gaps = 43/380 (11%)
Query: 6 EGRDSQSDALSLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRL 65
+G + ++++ +GL ++ M G P V L+D L R +I
Sbjct: 295 KGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIPRGCKPNVHTYTVLIDGLCRDGKIEE 354
Query: 66 ASCLYGAMVRDGVSPNKFTWSLVAQILCRSGKF-----------------------EVVL 102
A+ + MV+D + P+ T++ + C+ G+ E++
Sbjct: 355 ANGVCRKMVKDRIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELME 414
Query: 103 GL----------------LDSGIYSSVM-YNLVIDFYSKKGDFGAAFDRLNEMCNGRNLT 145
GL LD+G+ ++ YN++ID ++G A+ L+ M N ++
Sbjct: 415 GLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNTAYKLLSSM-NCFDIE 473
Query: 146 PGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAE 205
P T+++I++ + K +V+ +GLM+ K + ++G +I + +GKT A
Sbjct: 474 PDCLTFTAIINAFCKQGKADVASAFLGLMLRKGISLDE-VTGTT-LIDGVCKVGKTRDAL 531
Query: 206 MIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVL 265
I + +I + +L LSK +VKE + + I++ G+ Y V+ L
Sbjct: 532 FILETLVKMRILTTPHSLNVILDMLSKGCKVKEELAMLGKINKLGLVPSVVTYTTLVDGL 591
Query: 266 CKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDS 325
+ +L + G +P + + C G+ +E E+LLSA+ D G+ +
Sbjct: 592 IRSGDITGSFRILELMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNH 651
Query: 326 FCCSSLMEYYCSNRQIDKAI 345
+ +++ Y +N ++D+A+
Sbjct: 652 VTYTVMVKGYVNNGKLDRAL 671
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 86/410 (20%), Positives = 156/410 (38%), Gaps = 53/410 (12%)
Query: 40 VYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSGKFE 99
V+GF ++LL +L + + LA Y M DG + + LC++G E
Sbjct: 153 VFGFRLNYPCYSSLLMSLAKLDLGFLAYVTYRRMEADGFVVGMIDYRTIVNALCKNGYTE 212
Query: 100 VV---------LG-LLDSGIYSSVMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFS 149
+G +LDS I +S++ + + + A + M P
Sbjct: 213 AAEMFMSKILKIGFVLDSHIGTSLLLG-----FCRGLNLRDALKVFDVMSKEVTCAPNSV 267
Query: 150 TYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFK 209
+YS ++ G + E + + M EK P +TY
Sbjct: 268 SYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPST----------------RTYTV----- 306
Query: 210 RACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEH 269
++KAL G + +A ++ + RG Y ++ LC++
Sbjct: 307 ----------------LIKALCDRGLIDKAFNLFDEMIPRGCKPNVHTYTVLIDGLCRDG 350
Query: 270 QPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCS 329
+ EE G+ R +V+ P + + + C G+ ELL+ + + + +
Sbjct: 351 KIEEANGVCRKMVKDRIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFN 410
Query: 330 SLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKEL 389
LME C + KA+ L ++ S D+ +Y+VL+DGL ++G M A ++ M
Sbjct: 411 ELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNTAYKLLSSMNCF 470
Query: 390 KVVSSS-SFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDEATYKQVISG 438
+ +F +++ C + A ML+ G DE T +I G
Sbjct: 471 DIEPDCLTFTAIINAFCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDG 520
Score = 65.9 bits (159), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 56/251 (22%), Positives = 113/251 (45%), Gaps = 2/251 (0%)
Query: 191 VIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERG 250
++ L G T AAEM + L +L + +++A++++ ++S+
Sbjct: 201 IVNALCKNGYTEAAEMFMSKILKIGFVLDSHIGTSLLLGFCRGLNLRDALKVFDVMSKEV 260
Query: 251 ITVRDS-DYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEV 309
+S Y ++ LC+ + EE GL + E+G P + + + C +G +
Sbjct: 261 TCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRGLIDKA 320
Query: 310 EELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDG 369
L ++ +G + + L++ C + +I++A + K+ K + V TY+ L++G
Sbjct: 321 FNLFDEMIPRGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDRIFPSVITYNALING 380
Query: 370 LFKDGRMEEAVRIFDYMKELKVVSS-SSFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPD 428
KDGR+ A + M++ + +F ++ LC + + KA+ ML G PD
Sbjct: 381 YCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPD 440
Query: 429 EATYKQVISGF 439
+Y +I G
Sbjct: 441 IVSYNVLIDGL 451
Score = 59.7 bits (143), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/215 (20%), Positives = 93/215 (43%), Gaps = 1/215 (0%)
Query: 226 MLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERG 285
++ L + GR++EA + + E+G Y + LC ++ L +++ RG
Sbjct: 272 LIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIPRG 331
Query: 286 YIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAI 345
P + + C GK +E + ++ + ++L+ YC + ++ A
Sbjct: 332 CKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDRIFPSVITYNALINGYCKDGRVVPAF 391
Query: 346 ALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSS-SSFVIVVSRL 404
L +EK +V T++ L++GL + G+ +AV + M + + S+ +++ L
Sbjct: 392 ELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGL 451
Query: 405 CHLKELRKAMKNHDEMLKMGHKPDEATYKQVISGF 439
C + A K M +PD T+ +I+ F
Sbjct: 452 CREGHMNTAYKLLSSMNCFDIEPDCLTFTAIINAF 486
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 65/320 (20%), Positives = 129/320 (40%), Gaps = 40/320 (12%)
Query: 10 SQSDALSLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCL 69
+ +L+++LD S + L + + G VP+V L+D L R +I + +
Sbjct: 544 TTPHSLNVILDMLSKGCKVKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDITGSFRI 603
Query: 70 YGAMVRDGVSPNKFTWSLVAQILCRSGKFEVVLGLL----DSGIYSS-VMYNLVIDFYSK 124
M G PN + ++++ LC+ G+ E LL DSG+ + V Y +++ Y
Sbjct: 604 LELMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYVN 663
Query: 125 KGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHF 184
G A + + M R Y E++DRI +++ +L +
Sbjct: 664 NGKLDRALETVRAMVE------------------RGY---ELNDRIYSSLLQGFVLSQKG 702
Query: 185 LSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGC-------MLKALSKEGRVK 237
+ ++ +SD+ A +E I + + GC ++ L KEGR
Sbjct: 703 IDNSEE--STVSDI----ALRETDPECINELISVVEQLGGCISGLCIFLVTRLCKEGRTD 756
Query: 238 EAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFV 297
E+ + + ERG+ + + + C + + + L+ V++ G++P +
Sbjct: 757 ESNDLVQNVLERGVFLEKA-MDIIMESYCSKKKHTKCMELITLVLKSGFVPSFKSFCLVI 815
Query: 298 ASQCGKGKWKEVEELLSAVL 317
+G + EL+ +L
Sbjct: 816 QGLKKEGDAERARELVMELL 835
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.138 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 157,760,074
Number of Sequences: 539616
Number of extensions: 6462405
Number of successful extensions: 21233
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 249
Number of HSP's successfully gapped in prelim test: 172
Number of HSP's that attempted gapping in prelim test: 15631
Number of HSP's gapped (non-prelim): 2420
length of query: 440
length of database: 191,569,459
effective HSP length: 121
effective length of query: 319
effective length of database: 126,275,923
effective search space: 40282019437
effective search space used: 40282019437
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 63 (28.9 bits)