Query 047359
Match_columns 440
No_of_seqs 770 out of 1591
Neff 12.0
Searched_HMMs 46136
Date Fri Mar 29 10:20:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047359.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047359hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 2.2E-68 4.8E-73 509.2 52.4 423 10-439 404-857 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 4.7E-68 1E-72 507.0 52.4 429 9-439 434-892 (1060)
3 PLN03077 Protein ECB2; Provisi 100.0 4.7E-65 1E-69 495.0 43.4 416 9-439 149-599 (857)
4 PLN03081 pentatricopeptide (PP 100.0 2.9E-64 6.2E-69 478.4 47.5 418 8-439 83-504 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 3.5E-64 7.6E-69 488.9 45.5 415 9-439 250-667 (857)
6 PLN03081 pentatricopeptide (PP 100.0 3.1E-62 6.7E-67 464.5 41.4 404 6-427 152-561 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 2.6E-29 5.7E-34 250.5 50.9 417 8-439 461-881 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 6.8E-29 1.5E-33 247.5 48.5 399 9-422 496-899 (899)
9 PRK11447 cellulose synthase su 99.9 3.4E-22 7.5E-27 200.2 46.9 394 19-427 276-745 (1157)
10 TIGR00990 3a0801s09 mitochondr 99.9 1E-21 2.2E-26 185.1 45.0 401 15-423 130-571 (615)
11 KOG4626 O-linked N-acetylgluco 99.9 4.6E-23 9.9E-28 177.4 29.9 368 47-429 116-489 (966)
12 KOG4626 O-linked N-acetylgluco 99.9 1.1E-22 2.5E-27 175.0 32.2 380 11-405 115-501 (966)
13 PRK11788 tetratricopeptide rep 99.9 1.6E-22 3.5E-27 181.3 34.0 304 119-430 42-354 (389)
14 PRK11788 tetratricopeptide rep 99.9 1.4E-22 3.1E-27 181.6 32.1 298 56-361 44-354 (389)
15 PRK10049 pgaA outer membrane p 99.9 9.2E-21 2E-25 181.7 43.2 414 8-433 11-464 (765)
16 PRK11447 cellulose synthase su 99.9 6.1E-20 1.3E-24 184.2 47.3 223 193-419 277-554 (1157)
17 PRK15174 Vi polysaccharide exp 99.9 5.2E-20 1.1E-24 172.9 43.5 358 23-392 16-384 (656)
18 PRK15174 Vi polysaccharide exp 99.9 4E-20 8.6E-25 173.7 42.4 330 15-356 45-383 (656)
19 TIGR00990 3a0801s09 mitochondr 99.9 5.4E-19 1.2E-23 166.7 45.1 376 8-392 156-574 (615)
20 PRK14574 hmsH outer membrane p 99.9 1.6E-18 3.4E-23 163.5 47.6 401 19-432 41-520 (822)
21 PRK10049 pgaA outer membrane p 99.9 1.1E-18 2.5E-23 167.4 40.1 378 9-396 46-463 (765)
22 PRK09782 bacteriophage N4 rece 99.9 6.5E-17 1.4E-21 155.8 47.5 403 10-429 179-710 (987)
23 KOG2002 TPR-containing nuclear 99.8 6E-17 1.3E-21 147.1 36.7 410 9-429 267-749 (1018)
24 PRK14574 hmsH outer membrane p 99.8 7.8E-16 1.7E-20 145.5 43.6 364 55-431 42-485 (822)
25 KOG4422 Uncharacterized conser 99.8 6E-16 1.3E-20 128.3 36.8 405 13-425 117-592 (625)
26 KOG4422 Uncharacterized conser 99.8 7.6E-16 1.6E-20 127.7 36.6 369 46-418 206-620 (625)
27 KOG2002 TPR-containing nuclear 99.8 2.9E-16 6.2E-21 142.8 36.4 403 27-438 251-725 (1018)
28 PRK09782 bacteriophage N4 rece 99.8 3.9E-15 8.5E-20 143.7 44.5 389 19-430 320-745 (987)
29 KOG1915 Cell cycle control pro 99.8 6.9E-14 1.5E-18 117.7 38.5 400 13-423 74-536 (677)
30 KOG2003 TPR repeat-containing 99.8 4.8E-15 1E-19 124.1 29.8 387 13-408 202-708 (840)
31 PF13429 TPR_15: Tetratricopep 99.8 1.3E-17 2.8E-22 141.7 13.8 263 153-422 13-276 (280)
32 KOG0495 HAT repeat protein [RN 99.7 6.7E-13 1.5E-17 116.3 40.8 400 7-422 435-879 (913)
33 KOG2076 RNA polymerase III tra 99.7 1.5E-13 3.2E-18 124.6 37.7 361 13-381 140-547 (895)
34 KOG1155 Anaphase-promoting com 99.7 6.7E-13 1.4E-17 111.6 37.3 377 45-437 162-548 (559)
35 KOG2076 RNA polymerase III tra 99.7 4.6E-14 1E-18 127.8 32.8 325 90-421 147-510 (895)
36 PRK10747 putative protoheme IX 99.7 5.4E-14 1.2E-18 125.0 33.1 285 125-422 97-389 (398)
37 PF13429 TPR_15: Tetratricopep 99.7 4.4E-17 9.6E-22 138.4 12.6 261 17-316 13-274 (280)
38 KOG0495 HAT repeat protein [RN 99.7 3.9E-12 8.4E-17 111.6 41.7 384 24-423 388-782 (913)
39 TIGR00540 hemY_coli hemY prote 99.7 7.4E-14 1.6E-18 124.8 32.6 292 123-422 95-398 (409)
40 PRK10747 putative protoheme IX 99.7 8E-14 1.7E-18 123.9 31.7 280 95-388 97-389 (398)
41 KOG0547 Translocase of outer m 99.7 3E-13 6.4E-18 114.4 32.1 388 18-422 121-565 (606)
42 TIGR00540 hemY_coli hemY prote 99.7 1.3E-13 2.7E-18 123.3 31.6 286 93-388 95-398 (409)
43 KOG2003 TPR repeat-containing 99.7 3.9E-14 8.5E-19 118.7 24.8 382 50-439 204-669 (840)
44 KOG1126 DNA-binding cell divis 99.7 3.4E-14 7.3E-19 124.6 25.0 285 127-423 334-620 (638)
45 KOG1915 Cell cycle control pro 99.7 2.8E-11 6E-16 102.4 39.6 400 11-422 106-584 (677)
46 KOG1126 DNA-binding cell divis 99.7 5.9E-14 1.3E-18 123.2 23.5 285 97-392 334-623 (638)
47 KOG1173 Anaphase-promoting com 99.7 1.1E-11 2.4E-16 107.0 35.8 281 150-439 246-532 (611)
48 COG3071 HemY Uncharacterized e 99.6 3.7E-12 8E-17 105.4 31.1 292 125-428 97-395 (400)
49 COG2956 Predicted N-acetylgluc 99.6 3E-12 6.5E-17 102.8 29.1 290 125-422 48-346 (389)
50 COG2956 Predicted N-acetylgluc 99.6 1.5E-12 3.2E-17 104.6 27.2 296 50-354 39-347 (389)
51 KOG1155 Anaphase-promoting com 99.6 2.7E-11 6E-16 102.1 35.4 328 80-422 162-494 (559)
52 COG3071 HemY Uncharacterized e 99.6 3.9E-12 8.5E-17 105.3 28.4 268 161-439 97-371 (400)
53 KOG1129 TPR repeat-containing 99.6 6.3E-13 1.4E-17 106.8 19.0 234 189-429 227-462 (478)
54 KOG4318 Bicoid mRNA stability 99.6 4E-12 8.7E-17 115.2 25.2 270 4-305 17-286 (1088)
55 PF12569 NARP1: NMDA receptor- 99.5 6.5E-10 1.4E-14 100.1 37.2 296 15-318 7-333 (517)
56 KOG3785 Uncharacterized conser 99.5 1.2E-10 2.6E-15 95.1 29.1 399 19-432 29-497 (557)
57 KOG0547 Translocase of outer m 99.5 1.9E-10 4.1E-15 97.8 31.3 370 8-389 144-566 (606)
58 TIGR02521 type_IV_pilW type IV 99.5 2.3E-11 5E-16 101.0 25.6 200 220-422 31-231 (234)
59 PRK12370 invasion protein regu 99.5 1.4E-11 2.9E-16 114.6 26.5 181 236-421 320-500 (553)
60 PRK12370 invasion protein regu 99.5 1.5E-11 3.3E-16 114.3 26.8 266 147-423 255-535 (553)
61 KOG4318 Bicoid mRNA stability 99.5 1.6E-11 3.4E-16 111.4 25.2 274 33-340 11-286 (1088)
62 KOG2047 mRNA splicing factor [ 99.5 6.7E-09 1.4E-13 91.6 39.9 92 14-109 104-196 (835)
63 TIGR02521 type_IV_pilW type IV 99.5 3.2E-11 7E-16 100.1 24.7 200 186-389 32-232 (234)
64 KOG1156 N-terminal acetyltrans 99.5 4.1E-09 8.8E-14 93.0 37.2 388 25-425 54-470 (700)
65 KOG2376 Signal recognition par 99.5 7E-09 1.5E-13 90.6 37.9 409 13-440 13-503 (652)
66 KOG1129 TPR repeat-containing 99.5 1.9E-11 4.1E-16 98.5 20.3 234 151-392 226-461 (478)
67 PF12569 NARP1: NMDA receptor- 99.5 6.2E-10 1.3E-14 100.2 32.0 287 90-388 12-333 (517)
68 KOG4162 Predicted calmodulin-b 99.5 2.2E-09 4.8E-14 96.5 34.0 128 293-422 653-782 (799)
69 KOG2047 mRNA splicing factor [ 99.5 2.6E-08 5.7E-13 88.0 39.1 415 11-437 137-630 (835)
70 KOG1174 Anaphase-promoting com 99.5 1.2E-08 2.6E-13 85.4 35.1 274 110-395 230-506 (564)
71 PF13041 PPR_2: PPR repeat fam 99.4 1E-12 2.2E-17 78.4 5.6 49 45-93 1-49 (50)
72 PF13041 PPR_2: PPR repeat fam 99.4 1.4E-12 3E-17 77.8 6.1 50 10-59 1-50 (50)
73 KOG1173 Anaphase-promoting com 99.4 1.6E-08 3.5E-13 88.0 32.7 278 110-396 242-525 (611)
74 KOG1156 N-terminal acetyltrans 99.4 3.6E-08 7.8E-13 87.3 35.3 395 14-424 10-435 (700)
75 PRK11189 lipoprotein NlpI; Pro 99.4 1.5E-09 3.3E-14 92.5 26.1 231 163-402 41-279 (296)
76 KOG1174 Anaphase-promoting com 99.4 7.8E-09 1.7E-13 86.4 28.2 400 11-429 96-504 (564)
77 KOG4162 Predicted calmodulin-b 99.4 7E-08 1.5E-12 87.2 36.0 357 72-433 313-757 (799)
78 KOG1840 Kinesin light chain [C 99.3 1.4E-09 2.9E-14 96.9 25.4 233 84-316 201-476 (508)
79 KOG0548 Molecular co-chaperone 99.3 2.5E-08 5.4E-13 86.4 31.3 395 21-434 11-464 (539)
80 KOG3785 Uncharacterized conser 99.3 8.5E-09 1.8E-13 84.5 26.9 364 18-392 63-493 (557)
81 KOG1840 Kinesin light chain [C 99.3 1.9E-09 4E-14 96.0 24.5 237 185-421 199-477 (508)
82 COG3063 PilF Tfp pilus assembl 99.3 4.4E-09 9.5E-14 81.1 23.0 199 189-391 39-238 (250)
83 PRK11189 lipoprotein NlpI; Pro 99.3 4E-09 8.7E-14 89.9 25.5 227 198-434 39-275 (296)
84 COG3063 PilF Tfp pilus assembl 99.3 1.7E-08 3.7E-13 77.9 23.9 209 222-435 37-246 (250)
85 cd05804 StaR_like StaR_like; a 99.2 1.6E-07 3.5E-12 83.3 32.8 197 225-422 119-335 (355)
86 PF04733 Coatomer_E: Coatomer 99.2 5.8E-10 1.3E-14 93.6 15.3 251 122-391 11-267 (290)
87 KOG0624 dsRNA-activated protei 99.2 3.9E-07 8.4E-12 74.7 29.0 263 121-392 81-373 (504)
88 KOG0624 dsRNA-activated protei 99.2 1.1E-06 2.3E-11 72.2 30.5 298 46-355 37-371 (504)
89 KOG4340 Uncharacterized conser 99.2 3.9E-07 8.5E-12 73.2 27.4 397 7-422 5-442 (459)
90 PF04733 Coatomer_E: Coatomer 99.2 7.9E-09 1.7E-13 86.8 19.3 81 341-422 183-264 (290)
91 cd05804 StaR_like StaR_like; a 99.1 7.6E-07 1.7E-11 79.0 32.3 197 12-212 6-213 (355)
92 PRK04841 transcriptional regul 99.1 1.4E-06 3E-11 87.6 37.4 333 91-423 383-760 (903)
93 KOG4340 Uncharacterized conser 99.1 1E-07 2.2E-12 76.5 22.2 195 47-252 10-210 (459)
94 PLN02789 farnesyltranstransfer 99.1 3.3E-07 7.1E-12 78.2 25.4 226 200-432 52-309 (320)
95 KOG1914 mRNA cleavage and poly 99.1 8.3E-06 1.8E-10 71.3 38.1 406 8-422 16-500 (656)
96 KOG3617 WD40 and TPR repeat-co 99.1 4.4E-07 9.5E-12 82.9 26.2 322 46-420 725-1106(1416)
97 KOG0548 Molecular co-chaperone 99.0 3.4E-07 7.4E-12 79.5 24.3 340 55-429 10-425 (539)
98 KOG1125 TPR repeat-containing 99.0 3.9E-08 8.5E-13 86.0 18.6 226 192-422 292-526 (579)
99 KOG1128 Uncharacterized conser 99.0 2.4E-07 5.2E-12 83.4 23.6 216 187-422 400-615 (777)
100 PRK10370 formate-dependent nit 99.0 1E-07 2.2E-12 75.6 19.2 118 303-422 52-172 (198)
101 KOG2376 Signal recognition par 99.0 1.3E-05 2.8E-10 70.9 33.6 161 257-420 341-517 (652)
102 PRK04841 transcriptional regul 99.0 2.9E-06 6.2E-11 85.3 34.0 336 56-392 383-763 (903)
103 KOG1070 rRNA processing protei 99.0 3E-07 6.4E-12 88.5 24.2 201 47-252 1458-1666(1710)
104 PLN02789 farnesyltranstransfer 99.0 1.8E-06 3.9E-11 73.7 27.0 140 115-262 40-183 (320)
105 KOG1125 TPR repeat-containing 99.0 2.2E-07 4.8E-12 81.4 20.4 247 157-415 294-563 (579)
106 PRK15359 type III secretion sy 99.0 6.1E-08 1.3E-12 72.7 15.0 103 328-433 27-129 (144)
107 PRK15179 Vi polysaccharide bio 98.9 7E-07 1.5E-11 84.0 24.1 136 254-392 85-220 (694)
108 PRK14720 transcript cleavage f 98.9 1.2E-06 2.6E-11 83.4 25.0 250 111-421 30-281 (906)
109 KOG1914 mRNA cleavage and poly 98.9 3.6E-05 7.9E-10 67.5 36.1 388 44-437 17-480 (656)
110 KOG1128 Uncharacterized conser 98.9 3.4E-07 7.3E-12 82.5 19.3 239 144-405 394-634 (777)
111 KOG0985 Vesicle coat protein c 98.9 2.1E-05 4.5E-10 74.0 30.7 62 359-421 1278-1339(1666)
112 KOG3616 Selective LIM binding 98.9 5.2E-06 1.1E-10 75.3 25.9 168 192-384 739-906 (1636)
113 TIGR03302 OM_YfiO outer membra 98.9 1.2E-06 2.6E-11 72.6 20.6 185 218-423 31-232 (235)
114 KOG1127 TPR repeat-containing 98.9 5.8E-06 1.3E-10 77.4 26.3 379 28-419 474-909 (1238)
115 KOG1070 rRNA processing protei 98.8 5.5E-06 1.2E-10 80.2 26.4 234 181-419 1455-1696(1710)
116 PF12854 PPR_1: PPR repeat 98.8 3.2E-09 6.9E-14 56.6 3.1 32 7-38 2-33 (34)
117 TIGR02552 LcrH_SycD type III s 98.8 2E-07 4.3E-12 69.7 13.6 120 312-435 5-124 (135)
118 KOG3617 WD40 and TPR repeat-co 98.8 4.5E-05 9.7E-10 70.3 30.2 117 12-138 757-884 (1416)
119 KOG3616 Selective LIM binding 98.8 9.6E-06 2.1E-10 73.6 25.7 134 121-279 715-848 (1636)
120 PRK10370 formate-dependent nit 98.8 2.1E-06 4.5E-11 68.2 19.6 153 227-394 23-178 (198)
121 KOG3081 Vesicle coat complex C 98.8 2.4E-06 5.3E-11 67.7 19.1 171 242-422 95-270 (299)
122 PF12854 PPR_1: PPR repeat 98.8 1E-08 2.2E-13 54.7 4.1 32 77-108 2-33 (34)
123 TIGR03302 OM_YfiO outer membra 98.8 2.7E-06 5.8E-11 70.5 20.5 187 185-391 33-234 (235)
124 KOG0985 Vesicle coat protein c 98.8 0.00018 3.9E-09 68.1 34.4 297 10-352 982-1306(1666)
125 COG5010 TadD Flp pilus assembl 98.8 3.3E-06 7.1E-11 67.0 19.2 155 261-418 72-226 (257)
126 KOG1127 TPR repeat-containing 98.8 2.8E-05 6.1E-10 73.0 28.0 363 54-429 466-883 (1238)
127 PRK15359 type III secretion sy 98.8 3.2E-07 6.9E-12 68.9 13.2 123 276-404 14-136 (144)
128 PRK14720 transcript cleavage f 98.7 1.8E-05 3.9E-10 75.7 26.3 238 46-336 30-268 (906)
129 COG5010 TadD Flp pilus assembl 98.7 4.6E-06 1E-10 66.2 18.3 160 224-387 70-229 (257)
130 COG4783 Putative Zn-dependent 98.7 5.3E-05 1.1E-09 65.8 25.9 147 265-432 316-462 (484)
131 PRK15179 Vi polysaccharide bio 98.7 2.4E-05 5.2E-10 74.0 24.6 146 218-367 84-229 (694)
132 KOG3081 Vesicle coat complex C 98.7 4E-05 8.7E-10 61.0 21.7 150 193-353 116-270 (299)
133 COG4783 Putative Zn-dependent 98.6 4.5E-05 9.8E-10 66.2 22.3 121 299-422 315-436 (484)
134 KOG3060 Uncharacterized conser 98.6 0.00012 2.6E-09 58.0 21.9 201 198-402 25-233 (289)
135 KOG3060 Uncharacterized conser 98.6 0.00019 4.1E-09 56.9 22.7 192 160-356 24-222 (289)
136 PF09295 ChAPs: ChAPs (Chs5p-A 98.5 5.7E-06 1.2E-10 72.2 15.2 124 293-421 172-295 (395)
137 TIGR02552 LcrH_SycD type III s 98.5 1E-05 2.2E-10 60.4 14.0 102 291-394 18-119 (135)
138 PF12895 Apc3: Anaphase-promot 98.4 1.2E-06 2.6E-11 59.0 7.2 81 338-419 2-83 (84)
139 PF09976 TPR_21: Tetratricopep 98.4 2.4E-05 5.2E-10 59.0 14.8 126 293-420 15-144 (145)
140 KOG2053 Mitochondrial inherita 98.4 0.0018 3.9E-08 60.8 38.7 394 23-432 20-511 (932)
141 KOG0553 TPR repeat-containing 98.4 4.1E-06 8.9E-11 67.9 10.4 96 301-398 92-187 (304)
142 PLN03088 SGT1, suppressor of 98.4 1.1E-05 2.3E-10 70.8 13.7 103 297-401 9-111 (356)
143 PRK15363 pathogenicity island 98.3 2.5E-05 5.4E-10 57.8 12.4 93 329-422 39-131 (157)
144 PF09976 TPR_21: Tetratricopep 98.3 6.2E-05 1.3E-09 56.8 14.6 123 13-137 13-143 (145)
145 cd00189 TPR Tetratricopeptide 98.3 2.1E-05 4.5E-10 54.5 11.1 94 328-422 3-96 (100)
146 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 6E-05 1.3E-09 65.9 15.5 126 222-353 171-296 (395)
147 TIGR00756 PPR pentatricopeptid 98.3 2.1E-06 4.5E-11 46.6 4.3 34 396-429 2-35 (35)
148 TIGR00756 PPR pentatricopeptid 98.3 1.8E-06 3.9E-11 46.9 4.0 33 49-81 2-34 (35)
149 TIGR02795 tol_pal_ybgF tol-pal 98.2 6.7E-05 1.5E-09 54.5 13.2 96 328-423 5-105 (119)
150 PF13812 PPR_3: Pentatricopept 98.2 2.6E-06 5.5E-11 45.9 4.1 32 49-80 3-34 (34)
151 PF14559 TPR_19: Tetratricopep 98.2 6.6E-06 1.4E-10 52.8 6.6 65 371-437 2-66 (68)
152 PF13432 TPR_16: Tetratricopep 98.2 9.8E-06 2.1E-10 51.4 7.2 62 366-429 3-64 (65)
153 TIGR02795 tol_pal_ybgF tol-pal 98.2 0.0001 2.2E-09 53.6 13.4 104 293-396 5-112 (119)
154 PF05843 Suf: Suppressor of fo 98.2 6.1E-05 1.3E-09 63.7 13.4 128 293-422 4-135 (280)
155 PF13812 PPR_3: Pentatricopept 98.2 4.9E-06 1.1E-10 44.7 4.3 33 395-427 2-34 (34)
156 PF13414 TPR_11: TPR repeat; P 98.1 1.9E-05 4.2E-10 50.8 7.7 64 359-422 2-66 (69)
157 COG4235 Cytochrome c biogenesi 98.1 0.00023 5E-09 58.3 14.9 122 311-436 143-267 (287)
158 KOG2796 Uncharacterized conser 98.1 0.0012 2.7E-08 52.7 18.2 134 258-392 180-318 (366)
159 PF12895 Apc3: Anaphase-promot 98.1 1.6E-05 3.6E-10 53.4 6.8 81 303-385 2-83 (84)
160 PLN03088 SGT1, suppressor of 98.1 0.00017 3.8E-09 63.3 14.7 92 262-355 9-100 (356)
161 PF10037 MRP-S27: Mitochondria 98.1 0.00012 2.5E-09 64.5 13.4 118 185-302 66-185 (429)
162 KOG2053 Mitochondrial inherita 98.1 0.011 2.3E-07 55.9 39.7 192 22-217 53-258 (932)
163 KOG0553 TPR repeat-containing 98.1 7.8E-05 1.7E-09 60.7 11.0 100 264-367 90-189 (304)
164 PF10037 MRP-S27: Mitochondria 98.0 0.00012 2.6E-09 64.4 13.0 124 250-373 61-186 (429)
165 cd00189 TPR Tetratricopeptide 98.0 0.0001 2.2E-09 50.9 10.5 95 294-390 4-98 (100)
166 PF08579 RPM2: Mitochondrial r 98.0 0.0001 2.2E-09 50.6 9.4 76 191-266 31-115 (120)
167 PRK10866 outer membrane biogen 98.0 0.0033 7.1E-08 51.9 20.3 57 365-421 180-239 (243)
168 PRK02603 photosystem I assembl 98.0 0.00023 5.1E-09 55.5 13.0 100 328-429 38-153 (172)
169 PF14938 SNAP: Soluble NSF att 98.0 0.0011 2.3E-08 56.4 18.0 137 296-436 120-275 (282)
170 PF05843 Suf: Suppressor of fo 98.0 0.00016 3.4E-09 61.2 12.7 126 13-140 2-135 (280)
171 PRK15363 pathogenicity island 98.0 0.00023 4.9E-09 52.8 11.7 95 293-389 38-132 (157)
172 PF12688 TPR_5: Tetratrico pep 98.0 0.00054 1.2E-08 49.0 13.2 92 331-422 7-103 (120)
173 PF08579 RPM2: Mitochondrial r 98.0 0.00014 3.1E-09 49.9 9.6 79 16-94 29-116 (120)
174 PF14938 SNAP: Soluble NSF att 98.0 0.0012 2.6E-08 56.2 17.7 24 225-248 160-183 (282)
175 PRK10153 DNA-binding transcrip 98.0 0.00058 1.3E-08 62.8 16.6 62 360-422 420-481 (517)
176 PF13525 YfiO: Outer membrane 98.0 0.0039 8.5E-08 50.0 19.5 82 329-414 114-198 (203)
177 PRK02603 photosystem I assembl 97.9 0.00067 1.5E-08 52.9 14.4 83 258-341 38-122 (172)
178 KOG0550 Molecular chaperone (D 97.9 0.0024 5.2E-08 54.6 17.7 276 116-422 53-349 (486)
179 PF13432 TPR_16: Tetratricopep 97.9 8.4E-05 1.8E-09 47.1 7.4 62 331-393 3-64 (65)
180 PF13371 TPR_9: Tetratricopept 97.9 0.00011 2.4E-09 47.8 7.9 66 368-435 3-68 (73)
181 CHL00033 ycf3 photosystem I as 97.9 0.00039 8.5E-09 54.0 12.1 96 325-420 35-139 (168)
182 PRK10866 outer membrane biogen 97.9 0.0068 1.5E-07 50.0 19.7 178 191-387 38-239 (243)
183 PF01535 PPR: PPR repeat; Int 97.9 2.1E-05 4.5E-10 41.2 3.4 29 49-77 2-30 (31)
184 PF01535 PPR: PPR repeat; Int 97.9 2.2E-05 4.7E-10 41.1 3.4 29 222-250 2-30 (31)
185 KOG1538 Uncharacterized conser 97.8 0.01 2.3E-07 53.9 20.7 108 10-139 554-672 (1081)
186 CHL00033 ycf3 photosystem I as 97.8 0.00075 1.6E-08 52.4 12.5 64 150-213 37-100 (168)
187 KOG0550 Molecular chaperone (D 97.8 0.019 4.2E-07 49.4 22.7 168 146-319 166-350 (486)
188 PF14559 TPR_19: Tetratricopep 97.8 0.00016 3.6E-09 46.2 7.2 57 337-394 3-59 (68)
189 PF13414 TPR_11: TPR repeat; P 97.8 0.00023 5E-09 45.7 7.8 67 324-391 2-69 (69)
190 PRK10803 tol-pal system protei 97.8 0.00083 1.8E-08 55.8 12.5 102 327-430 145-251 (263)
191 PRK10153 DNA-binding transcrip 97.7 0.0013 2.7E-08 60.6 14.7 131 43-178 333-483 (517)
192 PF13525 YfiO: Outer membrane 97.7 0.013 2.8E-07 47.1 19.0 171 191-380 11-198 (203)
193 PF07079 DUF1347: Protein of u 97.7 0.032 6.9E-07 48.8 38.1 397 22-434 16-530 (549)
194 PRK15331 chaperone protein Sic 97.7 0.0043 9.4E-08 46.4 13.8 87 335-422 47-133 (165)
195 KOG2280 Vacuolar assembly/sort 97.7 0.049 1.1E-06 50.7 28.5 108 256-382 685-792 (829)
196 PF03704 BTAD: Bacterial trans 97.6 0.0018 3.9E-08 49.0 12.0 73 362-434 64-141 (146)
197 PF06239 ECSIT: Evolutionarily 97.6 0.00043 9.4E-09 53.9 8.3 90 8-97 43-153 (228)
198 COG4700 Uncharacterized protei 97.6 0.019 4.2E-07 43.6 16.9 130 79-213 86-221 (251)
199 COG3898 Uncharacterized membra 97.5 0.043 9.4E-07 47.0 24.2 290 15-319 85-392 (531)
200 PF12688 TPR_5: Tetratrico pep 97.5 0.0069 1.5E-07 43.4 12.4 12 232-243 87-98 (120)
201 PF04840 Vps16_C: Vps16, C-ter 97.5 0.056 1.2E-06 46.5 28.9 105 258-382 180-284 (319)
202 COG4235 Cytochrome c biogenesi 97.5 0.0099 2.1E-07 49.1 14.4 104 287-392 153-259 (287)
203 PF13281 DUF4071: Domain of un 97.4 0.071 1.5E-06 46.4 20.3 168 225-394 146-339 (374)
204 KOG1130 Predicted G-alpha GTPa 97.4 0.0037 8.1E-08 53.5 11.8 131 292-422 197-343 (639)
205 PF13371 TPR_9: Tetratricopept 97.4 0.0019 4.2E-08 41.9 8.0 61 333-394 3-63 (73)
206 PRK10803 tol-pal system protei 97.4 0.0037 8.1E-08 52.0 11.4 97 115-214 146-246 (263)
207 PF06239 ECSIT: Evolutionarily 97.4 0.0041 8.9E-08 48.7 10.6 103 219-340 46-153 (228)
208 KOG2041 WD40 repeat protein [G 97.3 0.13 2.9E-06 47.6 28.1 150 61-245 748-903 (1189)
209 KOG1130 Predicted G-alpha GTPa 97.3 0.0047 1E-07 52.9 11.1 261 20-283 25-343 (639)
210 COG5107 RNA14 Pre-mRNA 3'-end 97.3 0.11 2.4E-06 45.5 34.4 413 9-436 39-542 (660)
211 COG4700 Uncharacterized protei 97.2 0.056 1.2E-06 41.2 16.6 133 110-246 87-219 (251)
212 PF13281 DUF4071: Domain of un 97.2 0.13 2.8E-06 44.8 19.7 172 255-430 141-339 (374)
213 PF07079 DUF1347: Protein of u 97.2 0.14 3E-06 45.0 32.6 357 23-388 90-523 (549)
214 KOG2280 Vacuolar assembly/sort 97.2 0.2 4.4E-06 46.9 29.2 114 288-419 682-795 (829)
215 PF04840 Vps16_C: Vps16, C-ter 97.1 0.14 3.1E-06 44.1 28.2 109 222-350 179-287 (319)
216 PF03704 BTAD: Bacterial trans 97.1 0.061 1.3E-06 40.6 15.2 56 190-246 67-122 (146)
217 PF13424 TPR_12: Tetratricopep 97.1 0.0045 9.8E-08 40.7 7.8 61 362-422 7-74 (78)
218 KOG2041 WD40 repeat protein [G 97.1 0.26 5.6E-06 45.9 24.2 156 96-280 748-903 (1189)
219 KOG0543 FKBP-type peptidyl-pro 97.0 0.0092 2E-07 51.3 10.4 126 296-422 214-354 (397)
220 PRK15331 chaperone protein Sic 97.0 0.037 8E-07 41.6 12.1 87 300-388 47-133 (165)
221 PF12921 ATP13: Mitochondrial 97.0 0.013 2.9E-07 42.4 9.6 98 46-161 1-101 (126)
222 KOG1585 Protein required for f 97.0 0.083 1.8E-06 42.3 14.3 56 223-279 193-251 (308)
223 KOG0543 FKBP-type peptidyl-pro 97.0 0.023 4.9E-07 49.0 12.1 127 261-389 214-355 (397)
224 COG3898 Uncharacterized membra 96.9 0.22 4.7E-06 42.9 29.9 80 94-176 132-216 (531)
225 KOG2796 Uncharacterized conser 96.9 0.17 3.6E-06 41.1 23.0 130 189-319 181-315 (366)
226 KOG1258 mRNA processing protei 96.9 0.33 7.2E-06 44.4 32.1 125 13-140 46-179 (577)
227 PF09205 DUF1955: Domain of un 96.9 0.09 2E-06 37.6 14.5 65 361-425 87-151 (161)
228 COG1729 Uncharacterized protei 96.9 0.023 5E-07 46.4 11.0 100 327-429 144-248 (262)
229 PF13424 TPR_12: Tetratricopep 96.8 0.0052 1.1E-07 40.4 6.3 63 326-388 6-74 (78)
230 PF13428 TPR_14: Tetratricopep 96.8 0.0046 9.9E-08 35.2 5.1 40 362-401 3-42 (44)
231 PF10300 DUF3808: Protein of u 96.8 0.16 3.4E-06 46.7 17.5 164 257-422 190-375 (468)
232 PLN03098 LPA1 LOW PSII ACCUMUL 96.8 0.0086 1.9E-07 52.7 8.9 97 324-425 74-176 (453)
233 COG4105 ComL DNA uptake lipopr 96.8 0.22 4.8E-06 40.5 20.3 56 366-421 173-231 (254)
234 PF04053 Coatomer_WDAD: Coatom 96.6 0.26 5.6E-06 44.7 16.9 156 23-210 272-427 (443)
235 COG5107 RNA14 Pre-mRNA 3'-end 96.6 0.49 1.1E-05 41.8 29.8 382 30-422 27-494 (660)
236 PF04184 ST7: ST7 protein; In 96.5 0.15 3.3E-06 45.5 14.1 61 329-389 263-324 (539)
237 KOG1538 Uncharacterized conser 96.5 0.22 4.8E-06 45.8 15.4 201 4-249 627-846 (1081)
238 PF12921 ATP13: Mitochondrial 96.5 0.076 1.6E-06 38.5 10.3 52 215-266 47-99 (126)
239 smart00299 CLH Clathrin heavy 96.4 0.26 5.6E-06 36.8 13.6 111 15-137 10-121 (140)
240 PF09205 DUF1955: Domain of un 96.3 0.24 5.1E-06 35.6 14.1 65 327-392 88-152 (161)
241 PF13512 TPR_18: Tetratricopep 96.2 0.27 5.8E-06 36.2 12.0 54 302-355 22-77 (142)
242 PF13431 TPR_17: Tetratricopep 96.2 0.0068 1.5E-07 32.1 2.9 32 383-414 2-33 (34)
243 PRK11906 transcriptional regul 96.2 0.4 8.7E-06 42.7 15.0 148 270-420 273-433 (458)
244 PF04053 Coatomer_WDAD: Coatom 96.2 0.45 9.8E-06 43.2 15.9 154 57-244 271-426 (443)
245 COG3118 Thioredoxin domain-con 96.2 0.61 1.3E-05 38.8 16.6 139 266-408 145-286 (304)
246 smart00299 CLH Clathrin heavy 96.2 0.36 7.8E-06 36.0 14.5 86 258-351 10-95 (140)
247 COG3629 DnrI DNA-binding trans 96.2 0.075 1.6E-06 44.2 10.0 76 361-436 154-234 (280)
248 KOG3941 Intermediate in Toll s 96.2 0.048 1E-06 44.6 8.6 91 7-97 62-173 (406)
249 KOG1585 Protein required for f 96.1 0.55 1.2E-05 37.8 15.4 55 258-313 193-250 (308)
250 PF10300 DUF3808: Protein of u 96.1 0.57 1.2E-05 43.2 16.4 162 223-387 191-374 (468)
251 KOG2114 Vacuolar assembly/sort 96.1 0.61 1.3E-05 44.5 16.3 50 229-279 406-455 (933)
252 KOG2114 Vacuolar assembly/sort 96.1 1.5 3.2E-05 42.1 25.8 68 365-435 710-781 (933)
253 PLN03098 LPA1 LOW PSII ACCUMUL 96.0 0.33 7.2E-06 43.2 13.7 64 254-319 74-141 (453)
254 PRK11906 transcriptional regul 96.0 0.71 1.5E-05 41.3 15.6 149 235-388 273-435 (458)
255 PF13428 TPR_14: Tetratricopep 96.0 0.028 6E-07 32.0 5.0 40 394-435 1-40 (44)
256 KOG1941 Acetylcholine receptor 96.0 0.71 1.5E-05 39.6 14.7 125 296-420 128-272 (518)
257 COG3118 Thioredoxin domain-con 95.9 0.82 1.8E-05 38.1 16.1 120 195-317 144-263 (304)
258 KOG2610 Uncharacterized conser 95.9 0.39 8.5E-06 40.6 12.9 153 232-387 115-274 (491)
259 PF13170 DUF4003: Protein of u 95.9 0.95 2.1E-05 38.7 15.7 138 63-226 78-223 (297)
260 PF04184 ST7: ST7 protein; In 95.9 1.2 2.5E-05 40.2 16.3 150 190-354 173-324 (539)
261 KOG1941 Acetylcholine receptor 95.9 0.5 1.1E-05 40.4 13.4 167 115-282 86-273 (518)
262 COG0457 NrfG FOG: TPR repeat [ 95.8 0.83 1.8E-05 37.4 27.6 88 335-422 177-264 (291)
263 COG1729 Uncharacterized protei 95.7 0.22 4.7E-06 40.9 10.7 98 151-249 145-244 (262)
264 COG4105 ComL DNA uptake lipopr 95.6 0.99 2.1E-05 36.9 20.6 183 191-393 40-237 (254)
265 KOG4555 TPR repeat-containing 95.6 0.32 6.8E-06 34.9 9.7 93 299-392 52-147 (175)
266 PF07035 Mic1: Colon cancer-as 95.5 0.83 1.8E-05 34.9 14.2 134 33-177 15-149 (167)
267 KOG2610 Uncharacterized conser 95.4 1.4 3.1E-05 37.4 14.4 155 195-352 113-274 (491)
268 KOG4555 TPR repeat-containing 95.4 0.48 1E-05 34.0 9.9 91 264-355 52-145 (175)
269 KOG3941 Intermediate in Toll s 95.4 0.23 5E-06 40.8 9.5 69 340-408 87-172 (406)
270 PF13512 TPR_18: Tetratricopep 95.3 0.81 1.8E-05 33.7 11.7 74 158-231 20-93 (142)
271 PF13170 DUF4003: Protein of u 95.3 1.7 3.6E-05 37.2 17.1 133 236-370 78-227 (297)
272 KOG1920 IkappaB kinase complex 95.1 4.2 9.1E-05 40.9 20.8 83 331-421 971-1053(1265)
273 PF00515 TPR_1: Tetratricopept 94.9 0.067 1.5E-06 28.2 3.8 28 395-422 2-29 (34)
274 PF07035 Mic1: Colon cancer-as 94.8 1.4 3E-05 33.7 15.2 99 67-174 14-115 (167)
275 PF10602 RPN7: 26S proteasome 94.8 0.42 9.2E-06 37.3 9.4 61 151-211 39-99 (177)
276 PF08631 SPO22: Meiosis protei 94.7 2.4 5.1E-05 36.1 25.1 163 256-421 85-273 (278)
277 PF07719 TPR_2: Tetratricopept 94.7 0.077 1.7E-06 27.9 3.8 28 395-422 2-29 (34)
278 KOG4234 TPR repeat-containing 94.7 0.65 1.4E-05 36.2 9.8 97 299-396 104-204 (271)
279 PF13176 TPR_7: Tetratricopept 94.5 0.1 2.2E-06 28.0 4.0 26 396-421 1-26 (36)
280 PF00637 Clathrin: Region in C 94.5 0.056 1.2E-06 40.6 4.0 129 17-163 12-140 (143)
281 PF06552 TOM20_plant: Plant sp 94.4 0.83 1.8E-05 35.0 9.7 28 378-405 53-80 (186)
282 COG3629 DnrI DNA-binding trans 94.4 0.54 1.2E-05 39.3 9.5 61 48-109 154-214 (280)
283 PF10602 RPN7: 26S proteasome 94.3 0.91 2E-05 35.4 10.3 95 327-421 38-140 (177)
284 COG4649 Uncharacterized protei 94.2 1.9 4E-05 32.9 12.8 124 159-283 69-195 (221)
285 PF08631 SPO22: Meiosis protei 94.1 3.4 7.3E-05 35.2 22.1 18 300-317 256-273 (278)
286 PF09613 HrpB1_HrpK: Bacterial 94.0 2 4.4E-05 32.4 11.1 19 122-140 54-72 (160)
287 PF04097 Nic96: Nup93/Nic96; 93.9 6.3 0.00014 38.0 19.4 18 404-421 515-532 (613)
288 PF00637 Clathrin: Region in C 93.7 0.028 6E-07 42.3 1.0 87 52-140 12-98 (143)
289 PF07575 Nucleopor_Nup85: Nup8 93.6 6.9 0.00015 37.4 16.9 76 275-352 390-465 (566)
290 PF13431 TPR_17: Tetratricopep 93.5 0.1 2.2E-06 27.6 2.7 31 349-380 3-33 (34)
291 KOG4570 Uncharacterized conser 93.5 1.7 3.7E-05 36.6 10.7 99 254-354 63-164 (418)
292 PF07719 TPR_2: Tetratricopept 93.4 0.31 6.8E-06 25.4 4.6 30 362-391 3-32 (34)
293 KOG4648 Uncharacterized conser 93.4 0.52 1.1E-05 39.9 7.8 92 299-392 106-197 (536)
294 PF00515 TPR_1: Tetratricopept 93.3 0.32 6.9E-06 25.5 4.5 30 362-391 3-32 (34)
295 PF13176 TPR_7: Tetratricopept 93.2 0.25 5.4E-06 26.5 4.0 26 362-387 1-26 (36)
296 PF09613 HrpB1_HrpK: Bacterial 93.1 3 6.4E-05 31.6 13.1 53 301-354 21-73 (160)
297 KOG0276 Vesicle coat complex C 93.0 1.5 3.3E-05 40.4 10.5 98 159-279 648-745 (794)
298 COG0457 NrfG FOG: TPR repeat [ 93.0 4.2 9.1E-05 33.1 28.1 205 186-392 60-268 (291)
299 KOG1258 mRNA processing protei 92.7 8.3 0.00018 35.8 33.2 374 15-408 82-489 (577)
300 COG4785 NlpI Lipoprotein NlpI, 92.6 4.5 9.7E-05 32.3 14.7 186 194-391 74-268 (297)
301 PF10345 Cohesin_load: Cohesin 92.5 11 0.00023 36.5 29.3 48 371-418 372-428 (608)
302 PRK11619 lytic murein transgly 92.5 11 0.00024 36.5 28.2 110 58-175 44-156 (644)
303 COG4785 NlpI Lipoprotein NlpI, 92.4 4.7 0.0001 32.2 17.4 64 185-249 99-162 (297)
304 TIGR02561 HrpB1_HrpK type III 92.4 3.5 7.6E-05 30.6 11.8 53 302-355 22-74 (153)
305 KOG0890 Protein kinase of the 92.2 22 0.00047 39.3 25.7 152 52-209 1388-1542(2382)
306 KOG1550 Extracellular protein 92.1 11 0.00024 35.9 25.0 279 128-424 228-539 (552)
307 KOG0890 Protein kinase of the 92.1 22 0.00048 39.3 24.9 316 87-423 1388-1731(2382)
308 COG3947 Response regulator con 92.1 6.3 0.00014 33.0 16.0 221 202-432 104-356 (361)
309 KOG4234 TPR repeat-containing 91.9 5.1 0.00011 31.5 10.6 91 263-355 103-198 (271)
310 COG4649 Uncharacterized protei 91.8 4.7 0.0001 30.9 14.7 128 12-140 59-195 (221)
311 KOG0276 Vesicle coat complex C 91.7 4.4 9.6E-05 37.6 11.7 99 195-314 647-745 (794)
312 PF13181 TPR_8: Tetratricopept 91.5 0.34 7.4E-06 25.3 3.2 27 396-422 3-29 (34)
313 COG3947 Response regulator con 91.4 6.4 0.00014 33.0 11.4 43 63-107 149-191 (361)
314 TIGR02561 HrpB1_HrpK type III 91.4 1.2 2.7E-05 32.9 6.7 97 335-434 20-117 (153)
315 PRK15180 Vi polysaccharide bio 91.4 4.2 9.1E-05 36.6 11.0 85 336-421 334-418 (831)
316 KOG4570 Uncharacterized conser 91.3 5.1 0.00011 33.9 10.8 49 235-283 115-163 (418)
317 KOG1550 Extracellular protein 91.1 14 0.00031 35.1 19.0 117 267-390 261-394 (552)
318 PF02259 FAT: FAT domain; Int 91.1 10 0.00023 33.5 25.7 65 254-318 145-212 (352)
319 PF13174 TPR_6: Tetratricopept 91.1 0.4 8.7E-06 24.7 3.2 26 397-422 3-28 (33)
320 COG4455 ImpE Protein of avirul 91.0 2.5 5.4E-05 33.7 8.3 76 327-403 3-81 (273)
321 KOG2063 Vacuolar assembly/sort 91.0 18 0.00039 36.0 21.6 39 299-337 600-638 (877)
322 PF02259 FAT: FAT domain; Int 90.8 11 0.00024 33.3 21.6 64 185-248 146-212 (352)
323 COG1747 Uncharacterized N-term 90.6 14 0.0003 33.9 22.6 181 218-405 64-250 (711)
324 KOG0376 Serine-threonine phosp 90.2 0.72 1.6E-05 41.1 5.5 93 299-394 13-106 (476)
325 PF13374 TPR_10: Tetratricopep 90.0 0.84 1.8E-05 25.1 4.1 28 395-422 3-30 (42)
326 PF13174 TPR_6: Tetratricopept 89.9 0.96 2.1E-05 23.2 4.0 27 365-391 5-31 (33)
327 PF13929 mRNA_stabil: mRNA sta 89.8 11 0.00024 31.7 12.8 62 218-279 200-262 (292)
328 cd00923 Cyt_c_Oxidase_Va Cytoc 89.8 3.9 8.5E-05 27.7 7.3 45 308-352 25-69 (103)
329 PF02284 COX5A: Cytochrome c o 89.5 4.1 8.8E-05 28.0 7.3 42 311-352 31-72 (108)
330 PF13374 TPR_10: Tetratricopep 89.2 1.2 2.5E-05 24.5 4.3 28 361-388 3-30 (42)
331 cd00923 Cyt_c_Oxidase_Va Cytoc 89.1 3.8 8.3E-05 27.7 6.9 46 272-317 24-69 (103)
332 TIGR03504 FimV_Cterm FimV C-te 89.0 1 2.2E-05 25.4 3.7 23 366-388 5-27 (44)
333 PF02284 COX5A: Cytochrome c o 88.8 5.8 0.00013 27.2 8.3 44 274-317 29-72 (108)
334 KOG0403 Neoplastic transformat 88.7 18 0.00038 32.6 15.5 23 116-138 349-371 (645)
335 PF07721 TPR_4: Tetratricopept 88.7 0.78 1.7E-05 22.3 2.8 21 398-418 5-25 (26)
336 PF11207 DUF2989: Protein of u 88.6 7.9 0.00017 30.6 9.5 67 64-131 123-197 (203)
337 PF13181 TPR_8: Tetratricopept 88.3 1.2 2.6E-05 23.1 3.7 29 362-390 3-31 (34)
338 KOG1464 COP9 signalosome, subu 88.3 14 0.00029 30.7 18.3 209 142-351 20-257 (440)
339 PRK10941 hypothetical protein; 88.3 7.2 0.00016 32.9 9.8 75 363-437 184-259 (269)
340 COG2909 MalT ATP-dependent tra 88.0 29 0.00063 34.3 27.8 227 159-385 426-684 (894)
341 PF11207 DUF2989: Protein of u 87.8 12 0.00026 29.6 11.8 72 202-274 123-197 (203)
342 PF14853 Fis1_TPR_C: Fis1 C-te 87.3 2.9 6.3E-05 24.8 5.1 26 367-392 8-33 (53)
343 PF04097 Nic96: Nup93/Nic96; 87.2 30 0.00065 33.5 18.1 47 112-161 112-158 (613)
344 KOG4507 Uncharacterized conser 87.1 5.3 0.00011 37.0 8.7 100 303-403 620-719 (886)
345 COG2976 Uncharacterized protei 86.7 14 0.0003 29.1 13.6 54 334-389 135-188 (207)
346 COG1747 Uncharacterized N-term 86.5 27 0.00057 32.2 23.9 178 185-370 66-249 (711)
347 PRK09687 putative lyase; Provi 86.1 20 0.00044 30.5 26.0 200 219-438 67-276 (280)
348 KOG1920 IkappaB kinase complex 86.0 44 0.00096 34.3 25.5 81 297-388 972-1054(1265)
349 KOG4642 Chaperone-dependent E3 86.0 10 0.00022 30.9 8.8 85 300-388 20-106 (284)
350 PF13929 mRNA_stabil: mRNA sta 85.5 21 0.00046 30.2 18.4 137 127-265 143-288 (292)
351 COG4455 ImpE Protein of avirul 85.4 9.7 0.00021 30.5 8.4 77 292-369 3-81 (273)
352 PF13762 MNE1: Mitochondrial s 85.1 14 0.0003 27.6 9.6 50 111-161 78-128 (145)
353 smart00028 TPR Tetratricopepti 85.0 2.3 4.9E-05 21.0 3.8 27 396-422 3-29 (34)
354 TIGR03504 FimV_Cterm FimV C-te 84.8 2.7 5.9E-05 23.8 3.9 24 331-354 5-28 (44)
355 KOG3364 Membrane protein invol 84.7 13 0.00029 27.2 10.2 45 378-422 53-99 (149)
356 KOG4648 Uncharacterized conser 84.6 8.3 0.00018 33.1 8.2 93 263-359 105-197 (536)
357 PF06552 TOM20_plant: Plant sp 83.7 17 0.00037 28.2 8.9 45 128-181 96-140 (186)
358 TIGR02508 type_III_yscG type I 83.6 8.8 0.00019 26.3 6.4 49 122-177 49-97 (115)
359 PRK09687 putative lyase; Provi 83.1 28 0.00061 29.7 27.8 79 80-161 35-118 (280)
360 PF07163 Pex26: Pex26 protein; 82.5 25 0.00055 29.5 9.9 87 192-278 90-181 (309)
361 PF07163 Pex26: Pex26 protein; 82.4 22 0.00047 29.9 9.5 89 225-313 88-181 (309)
362 PF11848 DUF3368: Domain of un 82.0 6.2 0.00013 22.8 4.8 34 404-437 12-45 (48)
363 PF10579 Rapsyn_N: Rapsyn N-te 81.6 7.2 0.00016 25.3 5.3 45 337-381 18-64 (80)
364 COG2976 Uncharacterized protei 81.6 24 0.00052 27.8 14.8 90 331-424 95-189 (207)
365 KOG2063 Vacuolar assembly/sort 81.2 64 0.0014 32.5 15.7 59 15-75 310-374 (877)
366 PHA02875 ankyrin repeat protei 81.0 44 0.00095 30.5 13.1 214 121-361 8-231 (413)
367 PF10366 Vps39_1: Vacuolar sor 78.9 16 0.00035 25.7 7.0 27 114-140 41-67 (108)
368 PF13762 MNE1: Mitochondrial s 78.9 25 0.00053 26.3 9.8 81 188-268 42-128 (145)
369 KOG1308 Hsp70-interacting prot 78.6 1.6 3.4E-05 37.3 2.2 89 302-392 126-214 (377)
370 smart00386 HAT HAT (Half-A-TPR 77.7 7.3 0.00016 19.6 4.1 27 375-401 2-28 (33)
371 KOG2297 Predicted translation 76.2 48 0.0011 28.3 12.2 19 222-240 323-341 (412)
372 COG0790 FOG: TPR repeat, SEL1 76.2 49 0.0011 28.4 21.3 84 197-286 53-144 (292)
373 PF14689 SPOB_a: Sensor_kinase 75.5 14 0.00031 22.7 5.3 26 397-422 26-51 (62)
374 KOG0551 Hsp90 co-chaperone CNS 74.9 20 0.00043 30.9 7.5 87 333-419 89-178 (390)
375 KOG4507 Uncharacterized conser 74.8 16 0.00034 34.2 7.3 88 336-423 618-705 (886)
376 KOG4077 Cytochrome c oxidase, 74.6 27 0.00059 25.2 6.9 38 351-388 75-112 (149)
377 PF12862 Apc5: Anaphase-promot 74.5 23 0.00049 24.1 6.7 19 370-388 51-69 (94)
378 PF10579 Rapsyn_N: Rapsyn N-te 73.9 6.5 0.00014 25.5 3.5 44 198-241 19-64 (80)
379 PF14561 TPR_20: Tetratricopep 73.8 25 0.00054 23.8 6.7 53 359-411 21-75 (90)
380 COG4259 Uncharacterized protei 73.5 26 0.00057 24.0 6.7 52 379-432 56-108 (121)
381 PF11663 Toxin_YhaV: Toxin wit 73.0 5.1 0.00011 29.1 3.2 19 63-81 111-129 (140)
382 PRK09857 putative transposase; 72.9 47 0.001 28.6 9.5 64 365-428 211-274 (292)
383 PF08424 NRDE-2: NRDE-2, neces 72.9 65 0.0014 28.2 17.0 97 254-352 18-129 (321)
384 KOG4077 Cytochrome c oxidase, 71.7 32 0.0007 24.9 6.7 45 309-353 68-112 (149)
385 KOG0403 Neoplastic transformat 70.8 84 0.0018 28.6 18.7 58 364-424 513-573 (645)
386 KOG2066 Vacuolar assembly/sort 70.3 1.1E+02 0.0025 30.0 27.5 101 54-160 363-467 (846)
387 PF14689 SPOB_a: Sensor_kinase 70.3 18 0.00039 22.3 4.9 26 327-352 25-50 (62)
388 PF08311 Mad3_BUB1_I: Mad3/BUB 70.0 40 0.00086 24.6 9.7 42 378-419 81-124 (126)
389 PHA02875 ankyrin repeat protei 70.0 88 0.0019 28.5 17.4 16 342-357 297-312 (413)
390 PF07575 Nucleopor_Nup85: Nup8 69.7 1.1E+02 0.0024 29.5 12.3 27 12-39 149-175 (566)
391 PF04190 DUF410: Protein of un 69.7 67 0.0015 27.1 15.8 25 324-348 89-113 (260)
392 PF04910 Tcf25: Transcriptiona 68.7 87 0.0019 28.0 18.0 57 297-353 110-167 (360)
393 PRK10564 maltose regulon perip 68.6 13 0.00028 31.5 5.1 29 364-392 261-289 (303)
394 PRK11619 lytic murein transgly 68.3 1.2E+02 0.0027 29.6 35.0 79 85-165 102-180 (644)
395 PF02184 HAT: HAT (Half-A-TPR) 67.9 9.4 0.0002 19.8 2.6 25 409-435 2-26 (32)
396 KOG0687 26S proteasome regulat 67.8 82 0.0018 27.3 13.3 137 142-284 64-210 (393)
397 PF14853 Fis1_TPR_C: Fis1 C-te 67.4 24 0.00051 21.0 5.0 34 399-434 6-39 (53)
398 KOG1586 Protein required for f 67.3 69 0.0015 26.3 21.4 19 266-284 165-183 (288)
399 KOG0686 COP9 signalosome, subu 67.1 96 0.0021 27.8 14.1 15 304-318 318-332 (466)
400 COG0735 Fur Fe2+/Zn2+ uptake r 66.9 46 0.00099 25.0 7.4 63 33-96 7-69 (145)
401 PF12862 Apc5: Anaphase-promot 66.8 37 0.00081 23.0 7.0 53 301-353 9-69 (94)
402 COG0735 Fur Fe2+/Zn2+ uptake r 66.3 27 0.00059 26.2 6.1 25 192-216 27-51 (145)
403 cd00280 TRFH Telomeric Repeat 66.2 57 0.0012 25.6 7.6 22 332-353 118-139 (200)
404 PF11848 DUF3368: Domain of un 66.2 23 0.0005 20.4 4.6 31 59-89 14-44 (48)
405 PF08311 Mad3_BUB1_I: Mad3/BUB 66.1 49 0.0011 24.1 7.7 44 166-210 81-124 (126)
406 KOG1586 Protein required for f 66.1 74 0.0016 26.2 18.2 58 335-392 164-227 (288)
407 PF09670 Cas_Cas02710: CRISPR- 65.5 1.1E+02 0.0023 27.7 11.1 55 264-319 140-198 (379)
408 PF11846 DUF3366: Domain of un 65.2 49 0.0011 26.3 7.8 36 356-391 140-175 (193)
409 PF14561 TPR_20: Tetratricopep 65.0 40 0.00087 22.8 8.8 52 324-375 21-73 (90)
410 PF11846 DUF3366: Domain of un 64.9 27 0.00059 27.7 6.3 33 144-176 140-172 (193)
411 cd08819 CARD_MDA5_2 Caspase ac 64.3 40 0.00088 22.5 7.3 14 234-247 50-63 (88)
412 KOG2066 Vacuolar assembly/sort 64.1 1.5E+02 0.0033 29.2 25.5 100 19-124 363-467 (846)
413 PF09454 Vps23_core: Vps23 cor 63.3 24 0.00052 22.1 4.4 49 45-94 6-54 (65)
414 PRK10941 hypothetical protein; 63.1 94 0.002 26.4 10.2 64 330-394 186-249 (269)
415 cd08819 CARD_MDA5_2 Caspase ac 62.7 44 0.00094 22.4 7.1 14 339-352 50-63 (88)
416 PF09454 Vps23_core: Vps23 cor 62.7 31 0.00068 21.6 4.8 49 358-406 6-54 (65)
417 PF00244 14-3-3: 14-3-3 protei 62.5 89 0.0019 25.9 12.8 60 190-249 6-66 (236)
418 PF04762 IKI3: IKI3 family; I 62.3 1.6E+02 0.0035 30.4 12.3 30 185-214 812-843 (928)
419 PF11817 Foie-gras_1: Foie gra 61.0 82 0.0018 26.3 8.7 57 364-420 182-244 (247)
420 PF00244 14-3-3: 14-3-3 protei 60.7 97 0.0021 25.7 10.2 59 225-283 6-65 (236)
421 PF14669 Asp_Glu_race_2: Putat 60.3 84 0.0018 24.9 14.3 25 153-177 137-161 (233)
422 KOG2034 Vacuolar sorting prote 60.3 1.9E+02 0.0042 29.0 25.4 48 120-174 366-415 (911)
423 PF09868 DUF2095: Uncharacteri 60.0 31 0.00068 24.2 4.8 24 54-77 68-91 (128)
424 PF10345 Cohesin_load: Cohesin 60.0 1.8E+02 0.0038 28.5 37.2 163 12-175 59-252 (608)
425 PF07064 RIC1: RIC1; InterPro 59.4 1.1E+02 0.0023 25.8 14.8 155 14-176 84-248 (258)
426 KOG4814 Uncharacterized conser 58.6 1E+02 0.0022 29.6 9.1 86 336-422 365-456 (872)
427 COG5108 RPO41 Mitochondrial DN 58.4 47 0.001 31.8 7.1 88 52-139 33-130 (1117)
428 KOG2582 COP9 signalosome, subu 57.9 1.4E+02 0.0029 26.5 13.8 88 80-170 73-162 (422)
429 PRK10564 maltose regulon perip 57.7 23 0.00049 30.2 4.7 44 45-88 254-298 (303)
430 KOG0545 Aryl-hydrocarbon recep 57.5 1.1E+02 0.0024 25.4 10.2 94 298-392 186-296 (329)
431 KOG0376 Serine-threonine phosp 57.3 49 0.0011 30.2 6.9 108 261-373 10-118 (476)
432 KOG3364 Membrane protein invol 56.3 80 0.0017 23.4 9.5 52 341-392 51-103 (149)
433 KOG4521 Nuclear pore complex, 55.9 2.7E+02 0.0058 29.3 12.5 19 122-140 930-948 (1480)
434 PF11663 Toxin_YhaV: Toxin wit 55.5 16 0.00035 26.6 3.1 22 161-182 108-129 (140)
435 COG2912 Uncharacterized conser 55.0 85 0.0018 26.4 7.4 59 365-423 186-244 (269)
436 COG4003 Uncharacterized protei 54.8 43 0.00094 21.8 4.5 23 55-77 39-61 (98)
437 KOG0687 26S proteasome regulat 54.8 1.5E+02 0.0032 25.9 14.9 25 257-281 106-130 (393)
438 KOG2471 TPR repeat-containing 54.5 1.8E+02 0.004 27.0 12.9 40 125-165 30-69 (696)
439 KOG2297 Predicted translation 54.4 1.4E+02 0.0031 25.7 19.2 21 324-344 320-340 (412)
440 KOG4279 Serine/threonine prote 54.2 2.3E+02 0.005 28.0 14.3 114 203-319 181-316 (1226)
441 KOG0530 Protein farnesyltransf 54.1 1.3E+02 0.0029 25.3 13.5 184 232-421 55-251 (318)
442 PF08424 NRDE-2: NRDE-2, neces 53.4 1.6E+02 0.0034 25.9 18.0 107 208-317 8-129 (321)
443 KOG2659 LisH motif-containing 53.2 1.3E+02 0.0027 24.7 8.9 97 287-385 23-128 (228)
444 PF10255 Paf67: RNA polymerase 53.1 1.8E+02 0.0039 26.5 17.2 53 86-138 126-190 (404)
445 KOG2062 26S proteasome regulat 53.0 2.4E+02 0.0052 27.9 20.4 27 258-284 213-239 (929)
446 PF06957 COPI_C: Coatomer (COP 52.5 60 0.0013 29.5 6.7 19 54-72 125-143 (422)
447 PF11817 Foie-gras_1: Foie gra 52.4 63 0.0014 27.0 6.6 60 116-175 182-245 (247)
448 COG4976 Predicted methyltransf 52.4 37 0.00081 27.7 4.8 60 334-394 4-63 (287)
449 PF10366 Vps39_1: Vacuolar sor 52.3 81 0.0018 22.2 8.3 52 18-75 16-67 (108)
450 COG5191 Uncharacterized conser 52.1 47 0.001 28.5 5.5 76 324-400 106-182 (435)
451 smart00777 Mad3_BUB1_I Mad3/BU 51.7 92 0.002 22.7 8.9 40 379-418 82-123 (125)
452 PF15297 CKAP2_C: Cytoskeleton 50.5 1.8E+02 0.0039 25.7 8.9 53 341-395 119-175 (353)
453 PF10255 Paf67: RNA polymerase 50.5 2E+02 0.0043 26.2 12.2 62 151-212 125-191 (404)
454 PRK09462 fur ferric uptake reg 50.3 84 0.0018 23.7 6.5 61 315-376 7-68 (148)
455 KOG3807 Predicted membrane pro 49.7 1.8E+02 0.0038 25.4 13.4 59 331-389 281-340 (556)
456 COG5108 RPO41 Mitochondrial DN 48.9 1.8E+02 0.004 28.2 9.2 76 117-197 33-115 (1117)
457 PF09986 DUF2225: Uncharacteri 48.7 1.5E+02 0.0032 24.2 10.9 33 395-427 166-198 (214)
458 PF11123 DNA_Packaging_2: DNA 48.4 71 0.0015 20.4 4.7 15 408-422 59-73 (82)
459 COG4259 Uncharacterized protei 48.3 89 0.0019 21.5 6.9 29 364-392 76-104 (121)
460 KOG4567 GTPase-activating prot 48.2 1.8E+02 0.0039 25.1 9.5 72 67-138 263-344 (370)
461 PF03745 DUF309: Domain of unk 47.9 65 0.0014 19.9 5.3 32 337-368 11-42 (62)
462 KOG0686 COP9 signalosome, subu 47.8 2.1E+02 0.0047 25.8 14.3 62 222-283 152-215 (466)
463 PF04190 DUF410: Protein of un 47.8 1.7E+02 0.0037 24.7 17.9 24 112-135 90-113 (260)
464 PRK11639 zinc uptake transcrip 47.4 1.3E+02 0.0027 23.4 7.1 35 305-339 40-74 (169)
465 cd07153 Fur_like Ferric uptake 47.1 77 0.0017 22.5 5.6 42 56-97 9-50 (116)
466 PF10475 DUF2450: Protein of u 47.1 1.9E+02 0.0041 25.0 9.3 113 296-419 104-222 (291)
467 KOG0530 Protein farnesyltransf 46.0 1.8E+02 0.004 24.5 13.7 169 265-438 53-229 (318)
468 PF07720 TPR_3: Tetratricopept 46.0 47 0.001 17.7 3.4 23 396-418 3-25 (36)
469 PRK11639 zinc uptake transcrip 45.7 1.2E+02 0.0026 23.5 6.8 41 229-269 34-74 (169)
470 COG0790 FOG: TPR repeat, SEL1 45.1 2E+02 0.0043 24.6 21.6 84 161-252 54-145 (292)
471 PRK12798 chemotaxis protein; R 44.8 2.4E+02 0.0053 25.6 20.5 225 51-289 85-329 (421)
472 KOG2582 COP9 signalosome, subu 44.6 2.3E+02 0.005 25.2 17.1 222 150-390 104-346 (422)
473 KOG4567 GTPase-activating prot 44.5 2.1E+02 0.0046 24.8 9.1 59 110-174 276-344 (370)
474 TIGR02508 type_III_yscG type I 44.1 1.1E+02 0.0023 21.3 8.1 50 229-284 48-97 (115)
475 cd07153 Fur_like Ferric uptake 44.0 72 0.0016 22.6 5.1 48 17-64 5-52 (116)
476 KOG1308 Hsp70-interacting prot 43.9 20 0.00043 31.0 2.3 88 232-322 126-214 (377)
477 PF04762 IKI3: IKI3 family; I 43.9 4E+02 0.0086 27.8 16.5 25 259-283 816-842 (928)
478 KOG0889 Histone acetyltransfer 43.4 6.9E+02 0.015 30.4 25.6 24 225-248 2637-2660(3550)
479 cd08326 CARD_CASP9 Caspase act 43.4 98 0.0021 20.6 6.9 32 235-270 45-76 (84)
480 PF12926 MOZART2: Mitotic-spin 43.1 1E+02 0.0022 20.7 7.2 43 33-75 29-71 (88)
481 PF14669 Asp_Glu_race_2: Putat 43.0 1.7E+02 0.0037 23.3 14.6 54 226-279 138-205 (233)
482 PF01475 FUR: Ferric uptake re 42.6 81 0.0017 22.6 5.2 47 52-98 12-58 (120)
483 COG5159 RPN6 26S proteasome re 42.4 2.2E+02 0.0047 24.4 16.3 217 191-421 9-253 (421)
484 KOG3824 Huntingtin interacting 42.0 53 0.0011 28.1 4.4 59 336-395 127-185 (472)
485 KOG2471 TPR repeat-containing 41.4 3E+02 0.0066 25.7 14.7 106 265-372 250-381 (696)
486 PRK13342 recombination factor 40.7 2.9E+02 0.0063 25.3 18.9 33 338-370 243-275 (413)
487 PF09670 Cas_Cas02710: CRISPR- 40.6 2.8E+02 0.0061 25.1 10.9 53 22-75 141-197 (379)
488 COG5187 RPN7 26S proteasome re 40.5 2.4E+02 0.0051 24.2 12.1 171 64-234 55-241 (412)
489 PRK09462 fur ferric uptake reg 40.5 1.6E+02 0.0034 22.2 7.0 62 279-341 6-68 (148)
490 PF01475 FUR: Ferric uptake re 40.3 72 0.0016 22.8 4.6 48 16-63 11-58 (120)
491 smart00777 Mad3_BUB1_I Mad3/BU 40.0 1.5E+02 0.0032 21.7 8.1 44 165-209 80-123 (125)
492 PF09868 DUF2095: Uncharacteri 39.8 1.4E+02 0.0029 21.2 5.4 31 366-396 67-97 (128)
493 KOG2422 Uncharacterized conser 39.8 3.5E+02 0.0075 25.9 15.0 175 265-439 248-460 (665)
494 PHA00425 DNA packaging protein 39.3 1.1E+02 0.0023 19.9 4.5 32 375-406 14-45 (88)
495 KOG4642 Chaperone-dependent E3 38.9 2.3E+02 0.005 23.6 10.6 13 351-363 221-233 (284)
496 PF04910 Tcf25: Transcriptiona 37.8 3E+02 0.0066 24.7 18.7 159 254-422 39-221 (360)
497 KOG1464 COP9 signalosome, subu 37.2 2.6E+02 0.0056 23.7 24.1 58 225-282 150-218 (440)
498 KOG0991 Replication factor C, 37.1 2.4E+02 0.0053 23.4 12.3 137 149-296 131-279 (333)
499 PRK13800 putative oxidoreducta 37.0 5E+02 0.011 27.0 25.8 247 44-319 632-881 (897)
500 PF10963 DUF2765: Protein of u 36.6 1.3E+02 0.0028 20.0 4.7 33 8-40 12-44 (83)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.2e-68 Score=509.16 Aligned_cols=423 Identities=14% Similarity=0.218 Sum_probs=338.2
Q ss_pred CChHhHHHHHHHHHccCCcchHHHHHHHHHhcCCccChHhHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHH
Q 047359 10 SQSDALSLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVA 89 (440)
Q Consensus 10 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 89 (440)
++..+++.++..|.+.|.+++|+.+|+.|.. ||..+|+.++.+|++.|+++.|.++|+.|.+.|+.||..+|+.||
T Consensus 404 ~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI 479 (1060)
T PLN03218 404 MDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLI 479 (1060)
T ss_pred chHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 4444445555555555555555555555542 677888888888888888888888888888888888888888888
Q ss_pred HHHHhcCChHHHHHHHhccc-----CCchhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCchhhHHHHHHHHHhcCCh
Q 047359 90 QILCRSGKFEVVLGLLDSGI-----YSSVMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKT 164 (440)
Q Consensus 90 ~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 164 (440)
.+|++.|++++|.++|++|. ||..+|+.+|.+|++.|++++|.++|++|.+ .|+.||..+|+.++.+|++.|++
T Consensus 480 ~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~-~Gv~PD~vTYnsLI~a~~k~G~~ 558 (1060)
T PLN03218 480 STCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRS-KNVKPDRVVFNALISACGQSGAV 558 (1060)
T ss_pred HHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHCCCH
Confidence 88888888888888888876 7888888888888888888888888888877 78888888888888888888888
Q ss_pred hhHHHHHHHHHh--cCCCCcccccchHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHH
Q 047359 165 EVSDRIVGLMVE--KKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQI 242 (440)
Q Consensus 165 ~~a~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 242 (440)
++|.++|++|.. .++.|+ ..+|+.++.+|++.|++++|.++|+.|.+.++.|+..+|+.+|.+|++.|++++|.++
T Consensus 559 deA~~lf~eM~~~~~gi~PD--~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~l 636 (1060)
T PLN03218 559 DRAFDVLAEMKAETHPIDPD--HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSI 636 (1060)
T ss_pred HHHHHHHHHHHHhcCCCCCc--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHH
Confidence 888888888875 467777 7888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCC
Q 047359 243 YHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLL 322 (440)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 322 (440)
|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.|+.
T Consensus 637 f~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~ 716 (1060)
T PLN03218 637 YDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLR 716 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCC-chhhHHHHH
Q 047359 323 LDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVV-SSSSFVIVV 401 (440)
Q Consensus 323 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~l~ 401 (440)
||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|.+.|++++|.+++++|.+.|.. +..+|+.++
T Consensus 717 PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLI 796 (1060)
T PLN03218 717 PTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCIT 796 (1060)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 8888888888888888888888888888888888888888888888888888888888888888888877 777788777
Q ss_pred HHHHh----c-------------------ccHHHHHHHHHHHHHCCCCCCHHHHHHHhhhc
Q 047359 402 SRLCH----L-------------------KELRKAMKNHDEMLKMGHKPDEATYKQVISGF 439 (440)
Q Consensus 402 ~~~~~----~-------------------g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~a~ 439 (440)
..|.+ . +..++|..+|++|++.|+.||..||+.+|.++
T Consensus 797 glc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl 857 (1060)
T PLN03218 797 GLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCL 857 (1060)
T ss_pred HHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Confidence 55332 1 12356888888888888888888888888543
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=4.7e-68 Score=506.96 Aligned_cols=429 Identities=13% Similarity=0.186 Sum_probs=413.1
Q ss_pred CCChHhHHHHHHHHHccCCcchHHHHHHHHHhcCCccChHhHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHH
Q 047359 9 DSQSDALSLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLV 88 (440)
Q Consensus 9 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 88 (440)
.||..+|+.++.+|++.|+++.|.++|+.|.+.|+.||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.+
T Consensus 434 ~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaL 513 (1060)
T PLN03218 434 NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGAL 513 (1060)
T ss_pred CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 39999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHhccc-----CCchhHHHHHHHHHhcCChhHHHHHHHHHhc-CCCCCCchhhHHHHHHHHHhcC
Q 047359 89 AQILCRSGKFEVVLGLLDSGI-----YSSVMYNLVIDFYSKKGDFGAAFDRLNEMCN-GRNLTPGFSTYSSILDGARRYE 162 (440)
Q Consensus 89 ~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~~~~p~~~~~~~l~~~~~~~~ 162 (440)
|.+|++.|++++|.++|+.|. ||..+|+.+|.+|++.|++++|.++|++|.. ..|+.||..+|+.++.+|++.|
T Consensus 514 I~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G 593 (1060)
T PLN03218 514 IDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAG 593 (1060)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCC
Confidence 999999999999999999996 9999999999999999999999999999975 2578999999999999999999
Q ss_pred ChhhHHHHHHHHHhcCCCCcccccchHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHH
Q 047359 163 KTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQI 242 (440)
Q Consensus 163 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 242 (440)
++++|.++|+.|.+.|+.|+ ..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++
T Consensus 594 ~ldeA~elf~~M~e~gi~p~--~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l 671 (1060)
T PLN03218 594 QVDRAKEVYQMIHEYNIKGT--PEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEI 671 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 99999999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCC
Q 047359 243 YHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLL 322 (440)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 322 (440)
+++|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|...|+.
T Consensus 672 ~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~ 751 (1060)
T PLN03218 672 LQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLC 751 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHh----c-------------------CcHHHH
Q 047359 323 LDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFK----D-------------------GRMEEA 379 (440)
Q Consensus 323 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~-------------------g~~~~a 379 (440)
||..+|+.++.+|++.|++++|.+++.+|.+.|+.||..+|+.++..|.+ + +..+.|
T Consensus 752 Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~A 831 (1060)
T PLN03218 752 PNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWA 831 (1060)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHH
Confidence 99999999999999999999999999999999999999999999876432 1 124679
Q ss_pred HHHHHHHHHcCCC-chhhHHHHHHHHHhcccHHHHHHHHHHHHHCCCCCCHHHHHHHhhhc
Q 047359 380 VRIFDYMKELKVV-SSSSFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDEATYKQVISGF 439 (440)
Q Consensus 380 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~a~ 439 (440)
..+|++|.+.|.. +..+|..++.++.+.+..+.+..++++|...+..|+..+|++||.+|
T Consensus 832 l~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~ 892 (1060)
T PLN03218 832 LMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGF 892 (1060)
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhh
Confidence 9999999999998 88999999998889999999999999999999999999999999986
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4.7e-65 Score=495.00 Aligned_cols=416 Identities=16% Similarity=0.191 Sum_probs=343.0
Q ss_pred CCChHhHHHHHHHHHccCCcchHHHHHHHHHhcCCccChHhHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHH
Q 047359 9 DSQSDALSLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLV 88 (440)
Q Consensus 9 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 88 (440)
+||..+||.+|.+|++.|++++|+++|++|...|+.||..+|+.++.+|++.+++..+.+++..|.+.|+.||..+++.|
T Consensus 149 ~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~L 228 (857)
T PLN03077 149 ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNAL 228 (857)
T ss_pred CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHH
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHhccc-CCchhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCchhhHHHHHHHHHhcCChhhH
Q 047359 89 AQILCRSGKFEVVLGLLDSGI-YSSVMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVS 167 (440)
Q Consensus 89 ~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 167 (440)
+.+|++.|+++.|.++|++|. +|..+||.+|.+|++.|++++|+++|.+|.+ .|+.||..||+.++.+|.+.|+.+.+
T Consensus 229 i~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~-~g~~Pd~~ty~~ll~a~~~~g~~~~a 307 (857)
T PLN03077 229 ITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRE-LSVDPDLMTITSVISACELLGDERLG 307 (857)
T ss_pred HHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCChhHHHHHHHHHHhcCChHHH
Confidence 999999999999999999999 9999999999999999999999999999999 99999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCcccccchHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHH
Q 047359 168 DRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLIS 247 (440)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 247 (440)
.+++..+.+.|+.|+ ..+|+.++.+|++.|++++|.++|++|.. ||..+|+.++.+|++.|++++|+++|++|.
T Consensus 308 ~~l~~~~~~~g~~~d--~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~ 381 (857)
T PLN03077 308 REMHGYVVKTGFAVD--VSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALME 381 (857)
T ss_pred HHHHHHHHHhCCccc--hHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 999999999999999 99999999999999999999999999864 688899999999999999999999999999
Q ss_pred HcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhh
Q 047359 248 ERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFC 327 (440)
Q Consensus 248 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 327 (440)
+.|+.||..||+.++.+|++.|++++|.++++.+.+.|+.|+..+++.|+.+|++.|++++|.++|++|.+ +|..+
T Consensus 382 ~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs 457 (857)
T PLN03077 382 QDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVIS 457 (857)
T ss_pred HhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeee
Confidence 99999999999999999999999999999999999988888888888888888888888888888877754 34555
Q ss_pred hHHHHHHHHcCCcHHHHHHHHHHHH----------------------------------hccCCcCHHhHHHHHHHHHhc
Q 047359 328 CSSLMEYYCSNRQIDKAIALHIKIE----------------------------------KLKGSLDVATYDVLLDGLFKD 373 (440)
Q Consensus 328 ~~~l~~~~~~~~~~~~a~~~~~~~~----------------------------------~~~~~p~~~~~~~l~~~~~~~ 373 (440)
|+.++.+|++.|+.++|.++|++|. +.|+.++..++++|+.+|.++
T Consensus 458 ~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~ 537 (857)
T PLN03077 458 WTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRC 537 (857)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHc
Confidence 5555555555555555555555554 333333333333333444444
Q ss_pred CcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcccHHHHHHHHHHHHHCCCCCCHHHHHHHhhhc
Q 047359 374 GRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDEATYKQVISGF 439 (440)
Q Consensus 374 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~a~ 439 (440)
|++++|.++|+.+ .++..+|+.++.+|++.|+.++|.++|++|.+.|+.||..||+.+|++|
T Consensus 538 G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~ 599 (857)
T PLN03077 538 GRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCAC 599 (857)
T ss_pred CCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHH
Confidence 4444444444443 2255555666666666666666666666666656666666666665554
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.9e-64 Score=478.38 Aligned_cols=418 Identities=14% Similarity=0.199 Sum_probs=401.3
Q ss_pred CCCChHhHHHHHHHHHccCCcchHHHHHHHHHhcC-CccChHhHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHH
Q 047359 8 RDSQSDALSLVLDCYSHKGLFMDGLEVYRMMRVYG-FVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWS 86 (440)
Q Consensus 8 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 86 (440)
..++..+|+.+|..+.+.|++++|+++|+.|...+ ..||..+|+.++.+|.+.++++.+.+++..|.+.|+.||..+|+
T Consensus 83 ~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 83 IRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred CCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHH
Confidence 34456699999999999999999999999999764 67999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCChHHHHHHHhccc-CCchhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCchhhHHHHHHHHHhcCChh
Q 047359 87 LVAQILCRSGKFEVVLGLLDSGI-YSSVMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTE 165 (440)
Q Consensus 87 ~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 165 (440)
.++.+|++.|+++.|.++|++|. ||..+||.++.+|++.|++++|+++|++|.+ .|+.||..+|+.++.+|.+.|..+
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~-~g~~p~~~t~~~ll~a~~~~~~~~ 241 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWE-DGSDAEPRTFVVMLRASAGLGSAR 241 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHH-hCCCCChhhHHHHHHHHhcCCcHH
Confidence 99999999999999999999999 9999999999999999999999999999998 899999999999999999999999
Q ss_pred hHHHHHHHHHhcCCCCcccccchHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHH
Q 047359 166 VSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHL 245 (440)
Q Consensus 166 ~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 245 (440)
.+.+++..+.+.|+.|+ ..+|+.++++|++.|++++|.++|+.|.+ +|..+|+.++.+|++.|++++|+++|++
T Consensus 242 ~~~~l~~~~~~~g~~~d--~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~ 315 (697)
T PLN03081 242 AGQQLHCCVLKTGVVGD--TFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYE 315 (697)
T ss_pred HHHHHHHHHHHhCCCcc--ceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999999999999999 99999999999999999999999999964 5889999999999999999999999999
Q ss_pred HHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCch
Q 047359 246 ISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDS 325 (440)
Q Consensus 246 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 325 (440)
|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+++.++.+|++.|++++|.++|++|.+ ||.
T Consensus 316 M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~ 391 (697)
T PLN03081 316 MRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNL 391 (697)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999964 699
Q ss_pred hhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHH-cCCC-chhhHHHHHHH
Q 047359 326 FCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKE-LKVV-SSSSFVIVVSR 403 (440)
Q Consensus 326 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~-~~~~~~~l~~~ 403 (440)
.+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|.+ .+.. +..+|+.++.+
T Consensus 392 ~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~ 471 (697)
T PLN03081 392 ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIEL 471 (697)
T ss_pred eeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999986 4666 78899999999
Q ss_pred HHhcccHHHHHHHHHHHHHCCCCCCHHHHHHHhhhc
Q 047359 404 LCHLKELRKAMKNHDEMLKMGHKPDEATYKQVISGF 439 (440)
Q Consensus 404 ~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~a~ 439 (440)
|.+.|++++|.+++++| ++.||..+|+.|+.+|
T Consensus 472 l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~ 504 (697)
T PLN03081 472 LGREGLLDEAYAMIRRA---PFKPTVNMWAALLTAC 504 (697)
T ss_pred HHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHH
Confidence 99999999999998875 5799999999999987
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.5e-64 Score=488.88 Aligned_cols=415 Identities=16% Similarity=0.166 Sum_probs=396.2
Q ss_pred CCChHhHHHHHHHHHccCCcchHHHHHHHHHhcCCccChHhHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHH
Q 047359 9 DSQSDALSLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLV 88 (440)
Q Consensus 9 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 88 (440)
.||..+||.+|.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|+.+.|.+++..|.+.|+.||..+|+.|
T Consensus 250 ~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~L 329 (857)
T PLN03077 250 RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSL 329 (857)
T ss_pred CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHH
Confidence 57888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHhccc-CCchhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCchhhHHHHHHHHHhcCChhhH
Q 047359 89 AQILCRSGKFEVVLGLLDSGI-YSSVMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVS 167 (440)
Q Consensus 89 ~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 167 (440)
+.+|++.|++++|.++|++|. ||..+||.+|.+|++.|++++|+++|++|.+ .|+.||..||+.++.+|++.|+++.|
T Consensus 330 i~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~-~g~~Pd~~t~~~ll~a~~~~g~~~~a 408 (857)
T PLN03077 330 IQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQ-DNVSPDEITIASVLSACACLGDLDVG 408 (857)
T ss_pred HHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHH-hCCCCCceeHHHHHHHHhccchHHHH
Confidence 999999999999999999999 9999999999999999999999999999998 99999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCcccccchHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHH
Q 047359 168 DRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLIS 247 (440)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 247 (440)
.++++.+.+.|+.|+ ..+|+.++++|++.|++++|.++|++|.+ +|..+|+.++.+|++.|+.++|+.+|++|.
T Consensus 409 ~~l~~~~~~~g~~~~--~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~ 482 (857)
T PLN03077 409 VKLHELAERKGLISY--VVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQML 482 (857)
T ss_pred HHHHHHHHHhCCCcc--hHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999999999999 99999999999999999999999999875 578899999999999999999999999998
Q ss_pred HcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhh
Q 047359 248 ERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFC 327 (440)
Q Consensus 248 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 327 (440)
. ++.||..||+.++.+|++.|+.+.+.+++..+.+.|+.++..++++++.+|++.|++++|.++|+.+ .||..+
T Consensus 483 ~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s 556 (857)
T PLN03077 483 L-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVS 556 (857)
T ss_pred h-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhh
Confidence 6 5899999999999999999999999999999999999999999999999999999999999999987 579999
Q ss_pred hHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHH-HcCCC-chhhHHHHHHHHH
Q 047359 328 CSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMK-ELKVV-SSSSFVIVVSRLC 405 (440)
Q Consensus 328 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~-~~~~~~~l~~~~~ 405 (440)
|+.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|. +.+.. +..+|+.++.+|.
T Consensus 557 ~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~ 636 (857)
T PLN03077 557 WNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLG 636 (857)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999 66766 8899999999999
Q ss_pred hcccHHHHHHHHHHHHHCCCCCCHHHHHHHhhhc
Q 047359 406 HLKELRKAMKNHDEMLKMGHKPDEATYKQVISGF 439 (440)
Q Consensus 406 ~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~a~ 439 (440)
+.|++++|.+++++|. +.||..+|++|+.+|
T Consensus 637 r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac 667 (857)
T PLN03077 637 RAGKLTEAYNFINKMP---ITPDPAVWGALLNAC 667 (857)
T ss_pred hCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHH
Confidence 9999999999999983 789999999999987
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.1e-62 Score=464.47 Aligned_cols=404 Identities=14% Similarity=0.135 Sum_probs=325.3
Q ss_pred CCCCCChHhHHHHHHHHHccCCcchHHHHHHHHHhcCCccChHhHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhH
Q 047359 6 EGRDSQSDALSLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTW 85 (440)
Q Consensus 6 ~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 85 (440)
.|+.||..+|+.++..|++.|++++|.++|++|.+ ||..+||.++.+|++.|++++|.++|++|.+.|+.|+..+|
T Consensus 152 ~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~ 227 (697)
T PLN03081 152 SGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTF 227 (697)
T ss_pred hCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhH
Confidence 45555555555555555555555555555555542 45555666666666666666666666666555555566666
Q ss_pred HHHHHHHHhcCChHHHHHHHhccc-----CCchhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCchhhHHHHHHHHHh
Q 047359 86 SLVAQILCRSGKFEVVLGLLDSGI-----YSSVMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDGARR 160 (440)
Q Consensus 86 ~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 160 (440)
+.++.++++.|..+.+.+++..+. ++..+|+.|+.+|++.|++++|.++|++|.+ +|..+|+.++.+|++
T Consensus 228 ~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-----~~~vt~n~li~~y~~ 302 (697)
T PLN03081 228 VVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE-----KTTVAWNSMLAGYAL 302 (697)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC-----CChhHHHHHHHHHHh
Confidence 666666666665555555554443 6777788888899999999999999988855 688889999999999
Q ss_pred cCChhhHHHHHHHHHhcCCCCcccccchHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHH
Q 047359 161 YEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAI 240 (440)
Q Consensus 161 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 240 (440)
.|++++|.++|++|.+.|+.|+ ..+|+.++.+|++.|++++|.+++..|.+.|+.||..+|+.++.+|++.|++++|.
T Consensus 303 ~g~~~eA~~lf~~M~~~g~~pd--~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~ 380 (697)
T PLN03081 303 HGYSEEALCLYYEMRDSGVSID--QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDAR 380 (697)
T ss_pred CCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHH
Confidence 9999999999999988888888 88899999999999999999999999998888889999999999999999999999
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHh-c
Q 047359 241 QIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLD-K 319 (440)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~ 319 (440)
++|++|.+ ||..+|+.++.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .
T Consensus 381 ~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~ 456 (697)
T PLN03081 381 NVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENH 456 (697)
T ss_pred HHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhc
Confidence 99988864 577889999999999999999999999999888999999999999999999999999999999875 5
Q ss_pred CCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHH
Q 047359 320 GLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVI 399 (440)
Q Consensus 320 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 399 (440)
|+.|+..+|+.++.+|++.|++++|.++++++ +..|+..+|++|+.+|...|+++.|..+++++.+.+|.+..+|..
T Consensus 457 g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~ 533 (697)
T PLN03081 457 RIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVV 533 (697)
T ss_pred CCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHH
Confidence 88889899999999999999999998887654 567888899999999999999999999998888887777888999
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHCCCCC
Q 047359 400 VVSRLCHLKELRKAMKNHDEMLKMGHKP 427 (440)
Q Consensus 400 l~~~~~~~g~~~~a~~~~~~m~~~~~~p 427 (440)
++..|.+.|++++|.+++++|.+.|+.+
T Consensus 534 L~~~y~~~G~~~~A~~v~~~m~~~g~~k 561 (697)
T PLN03081 534 LLNLYNSSGRQAEAAKVVETLKRKGLSM 561 (697)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCcc
Confidence 9999999999999999999999888753
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.6e-29 Score=250.50 Aligned_cols=417 Identities=13% Similarity=0.070 Sum_probs=335.9
Q ss_pred CCCChHhHHHHHHHHHccCCcchHHHHHHHHHhcCCccChHhHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHH
Q 047359 8 RDSQSDALSLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSL 87 (440)
Q Consensus 8 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 87 (440)
.++++.++..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++.+.+.+ +.+..++..
T Consensus 461 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~ 538 (899)
T TIGR02917 461 QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILA 538 (899)
T ss_pred CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHH
Confidence 34567778888888888888888888888887654 3456667777788888888888888888887754 346677888
Q ss_pred HHHHHHhcCChHHHHHHHhccc----CCchhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCchhhHHHHHHHHHhcCC
Q 047359 88 VAQILCRSGKFEVVLGLLDSGI----YSSVMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEK 163 (440)
Q Consensus 88 l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 163 (440)
+...+.+.|+.++|...++++. .+...+..++..+.+.|++++|..+++.+.+ ..+.+...|..+..++...|+
T Consensus 539 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~ 616 (899)
T TIGR02917 539 LAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAAD--AAPDSPEAWLMLGRAQLAAGD 616 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHcCC
Confidence 8888888888888888888775 4455677788888888899999888888865 223456688888888889999
Q ss_pred hhhHHHHHHHHHhcCCCCcccccchHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHH
Q 047359 164 TEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIY 243 (440)
Q Consensus 164 ~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 243 (440)
+++|...++.+.+.. |++ ...+..+...+...|++++|...++++.+..+. +..++..+...+...|++++|.+++
T Consensus 617 ~~~A~~~~~~~~~~~--~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~ 692 (899)
T TIGR02917 617 LNKAVSSFKKLLALQ--PDS-ALALLLLADAYAVMKNYAKAITSLKRALELKPD-NTEAQIGLAQLLLAAKRTESAKKIA 692 (899)
T ss_pred HHHHHHHHHHHHHhC--CCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999998888754 432 567778888888999999999999988876544 5778888888888999999999999
Q ss_pred HHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCC
Q 047359 244 HLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLL 323 (440)
Q Consensus 244 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 323 (440)
+.+.+..+ .+...+..+...+...|++++|...++.+...+ |+..++..+...+.+.|++++|.+.++.+.+..+.
T Consensus 693 ~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~- 768 (899)
T TIGR02917 693 KSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPN- 768 (899)
T ss_pred HHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-
Confidence 98888764 366777888888889999999999999988764 55567778888888999999999999998877544
Q ss_pred chhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHH
Q 047359 324 DSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSR 403 (440)
Q Consensus 324 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 403 (440)
+...+..+...|...|+.++|.+.|+++.+..+ ++...+..+...+...|+ .+|+..++++.+..+.++..+..+...
T Consensus 769 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~ 846 (899)
T TIGR02917 769 DAVLRTALAELYLAQKDYDKAIKHYRTVVKKAP-DNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWL 846 (899)
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHH
Confidence 777888888899999999999999999988754 377888889999999999 889999999988887788888889999
Q ss_pred HHhcccHHHHHHHHHHHHHCCCCCCHHHHHHHhhhc
Q 047359 404 LCHLKELRKAMKNHDEMLKMGHKPDEATYKQVISGF 439 (440)
Q Consensus 404 ~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~a~ 439 (440)
+...|++++|.+.++++++.+. .+..++..+..++
T Consensus 847 ~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~ 881 (899)
T TIGR02917 847 LVEKGEADRALPLLRKAVNIAP-EAAAIRYHLALAL 881 (899)
T ss_pred HHHcCCHHHHHHHHHHHHhhCC-CChHHHHHHHHHH
Confidence 9999999999999999998543 2666666665443
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=6.8e-29 Score=247.54 Aligned_cols=399 Identities=14% Similarity=0.067 Sum_probs=353.5
Q ss_pred CCChHhHHHHHHHHHccCCcchHHHHHHHHHhcCCccChHhHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHH
Q 047359 9 DSQSDALSLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLV 88 (440)
Q Consensus 9 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 88 (440)
+.+...+..+...+...|++++|.+.|+.+.+.+ +.+..++..+...+.+.|+.++|..+++++.+.+ +.+...+..+
T Consensus 496 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 573 (899)
T TIGR02917 496 PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALAL 573 (899)
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHH
Confidence 3456677888899999999999999999999875 4578889999999999999999999999998765 4567788899
Q ss_pred HHHHHhcCChHHHHHHHhccc----CCchhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCC-chhhHHHHHHHHHhcCC
Q 047359 89 AQILCRSGKFEVVLGLLDSGI----YSSVMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTP-GFSTYSSILDGARRYEK 163 (440)
Q Consensus 89 ~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~ 163 (440)
+..+...|++++|..+++.+. .+...|..+..++...|++++|...|+++.+ ..| +...+..+..++.+.|+
T Consensus 574 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~ 650 (899)
T TIGR02917 574 AQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLA---LQPDSALALLLLADAYAVMKN 650 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHcCC
Confidence 999999999999999999887 4567899999999999999999999999976 334 45678889999999999
Q ss_pred hhhHHHHHHHHHhcCCCCcccccchHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHH
Q 047359 164 TEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIY 243 (440)
Q Consensus 164 ~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 243 (440)
+++|...++++.+.. |++ ..++..++..+...|++++|.++++.+.+..+. +...+..+...+...|++++|...|
T Consensus 651 ~~~A~~~~~~~~~~~--~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~ 726 (899)
T TIGR02917 651 YAKAITSLKRALELK--PDN-TEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPK-AALGFELEGDLYLRQKDYPAAIQAY 726 (899)
T ss_pred HHHHHHHHHHHHhcC--CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-ChHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999998764 443 678889999999999999999999999987654 6778888999999999999999999
Q ss_pred HHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCC
Q 047359 244 HLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLL 323 (440)
Q Consensus 244 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 323 (440)
+.+...+. +..++..+..++.+.|++++|.+.++.+.+.. +.+...+..+...|...|++++|...|+++.+..+.
T Consensus 727 ~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~- 802 (899)
T TIGR02917 727 RKALKRAP--SSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPD- 802 (899)
T ss_pred HHHHhhCC--CchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC-
Confidence 99998764 44778889999999999999999999998864 567788899999999999999999999999987654
Q ss_pred chhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHH
Q 047359 324 DSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSR 403 (440)
Q Consensus 324 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 403 (440)
+...++.+...+...|+ ++|+..++++.+.... +..++..+...+...|++++|.+.++++.+.++.++.++..++.+
T Consensus 803 ~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 880 (899)
T TIGR02917 803 NAVVLNNLAWLYLELKD-PRALEYAEKALKLAPN-IPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALA 880 (899)
T ss_pred CHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Confidence 78889999999999999 8899999999986443 567788899999999999999999999999998899999999999
Q ss_pred HHhcccHHHHHHHHHHHHH
Q 047359 404 LCHLKELRKAMKNHDEMLK 422 (440)
Q Consensus 404 ~~~~g~~~~a~~~~~~m~~ 422 (440)
+.+.|++++|.+++++|++
T Consensus 881 ~~~~g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 881 LLATGRKAEARKELDKLLN 899 (899)
T ss_pred HHHcCCHHHHHHHHHHHhC
Confidence 9999999999999999863
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.94 E-value=3.4e-22 Score=200.16 Aligned_cols=394 Identities=13% Similarity=0.065 Sum_probs=271.3
Q ss_pred HHHHHccCCcchHHHHHHHHHhcCCccChHhHHHHHHHHHhccchhHHHHHHHHHHHcCCCC-ChhhH------------
Q 047359 19 LDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSP-NKFTW------------ 85 (440)
Q Consensus 19 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~------------ 85 (440)
...+...|++++|+..|++..+.. +.+...+..+...+.+.|++++|...|++..+..... +...|
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 455677899999999999998865 3477888889999999999999999999988754221 11112
Q ss_pred HHHHHHHHhcCChHHHHHHHhccc----CCchhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCc-hhhHHHHHHH---
Q 047359 86 SLVAQILCRSGKFEVVLGLLDSGI----YSSVMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPG-FSTYSSILDG--- 157 (440)
Q Consensus 86 ~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~--- 157 (440)
......+.+.|++++|+..|++.. .+...+..+...+...|++++|++.|++..+ ..|+ ...+..+...
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~---~~p~~~~a~~~L~~l~~~ 431 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALR---MDPGNTNAVRGLANLYRQ 431 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHh
Confidence 122446678899999999999877 3455677888999999999999999999876 3444 2233333333
Q ss_pred ---------------------------------------HHhcCChhhHHHHHHHHHhcCCCCcccccchHHHHHHHhhc
Q 047359 158 ---------------------------------------ARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDM 198 (440)
Q Consensus 158 ---------------------------------------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 198 (440)
+...|++++|.+.+++.++.. |++ ...+..+...|.+.
T Consensus 432 ~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~--P~~-~~~~~~LA~~~~~~ 508 (1157)
T PRK11447 432 QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD--PGS-VWLTYRLAQDLRQA 508 (1157)
T ss_pred cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCC-HHHHHHHHHHHHHc
Confidence 334455566666666555543 332 34445555666666
Q ss_pred CcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCCh---------hhHHHHHHHHHhcC
Q 047359 199 GKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRD---------SDYYAFVNVLCKEH 269 (440)
Q Consensus 199 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------~~~~~l~~~~~~~~ 269 (440)
|++++|...++++.+..+. +...+..+...+...++.++|+..++.+......++. ..+......+...|
T Consensus 509 G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G 587 (1157)
T PRK11447 509 GQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSG 587 (1157)
T ss_pred CCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCC
Confidence 6666666666665544332 3333333333444556666666655554322111111 11223445566777
Q ss_pred ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHH
Q 047359 270 QPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHI 349 (440)
Q Consensus 270 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 349 (440)
+.++|..+++. .+++...+..+...+.+.|++++|+..|+++.+..+. +...+..++..|...|++++|++.++
T Consensus 588 ~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l~ 661 (1157)
T PRK11447 588 KEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARAQLA 661 (1157)
T ss_pred CHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 77777777661 2445566778888899999999999999999987654 67788899999999999999999999
Q ss_pred HHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCC-ch-----hhHHHHHHHHHhcccHHHHHHHHHHHHH-
Q 047359 350 KIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVV-SS-----SSFVIVVSRLCHLKELRKAMKNHDEMLK- 422 (440)
Q Consensus 350 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~-----~~~~~l~~~~~~~g~~~~a~~~~~~m~~- 422 (440)
.+.+.... +...+..+..++...|++++|.++++++....+. ++ ..+..+...+...|++++|+..|++.+.
T Consensus 662 ~ll~~~p~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~ 740 (1157)
T PRK11447 662 KLPATAND-SLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVA 740 (1157)
T ss_pred HHhccCCC-ChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 88765332 4556777888889999999999999999877654 22 3556667888899999999999998864
Q ss_pred CCCCC
Q 047359 423 MGHKP 427 (440)
Q Consensus 423 ~~~~p 427 (440)
.|+.|
T Consensus 741 ~~~~~ 745 (1157)
T PRK11447 741 SGITP 745 (1157)
T ss_pred cCCCC
Confidence 44443
No 10
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.94 E-value=1e-21 Score=185.09 Aligned_cols=401 Identities=10% Similarity=-0.046 Sum_probs=296.7
Q ss_pred HHHHHHHHHccCCcchHHHHHHHHHhcCCccChHhHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 047359 15 LSLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILCR 94 (440)
Q Consensus 15 ~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 94 (440)
+......+.+.|++++|+..|++..+. .|+...|..+..++.+.|++++|++.++..++.. +.+...+..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 445667888899999999999999875 4778889999999999999999999999998864 3356788889999999
Q ss_pred cCChHHHHHHHhccc--C--CchhHHHHHHHHHhcCChhHHHHHHHHHhc--------------------------CCCC
Q 047359 95 SGKFEVVLGLLDSGI--Y--SSVMYNLVIDFYSKKGDFGAAFDRLNEMCN--------------------------GRNL 144 (440)
Q Consensus 95 ~~~~~~a~~~~~~~~--~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--------------------------~~~~ 144 (440)
.|++++|+.-|.... + +......++..+........+...+..-.. ....
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNEL 286 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccc
Confidence 999999988776543 1 111111111111110001111111110000 0000
Q ss_pred CCch-hhHHHHHHH---HHhcCChhhHHHHHHHHHhcC-CCCcccccchHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCC
Q 047359 145 TPGF-STYSSILDG---ARRYEKTEVSDRIVGLMVEKK-LLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQ 219 (440)
Q Consensus 145 ~p~~-~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 219 (440)
.|+. ..+..+... ....+++++|.+.|+...+.+ ..|+. ...+..+...+...|++++|...+++..+..+. +
T Consensus 287 ~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~-a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~ 364 (615)
T TIGR00990 287 DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKE-AIALNLRGTFKCLKGKHLEALADLSKSIELDPR-V 364 (615)
T ss_pred ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-c
Confidence 1110 011111100 112367899999999998865 23432 567888889999999999999999999887543 4
Q ss_pred HHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 047359 220 DDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVAS 299 (440)
Q Consensus 220 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 299 (440)
...|..+...+...|++++|...|+...+.... +...+..+...+...|++++|...|+...+.. +.+...+..+...
T Consensus 365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~ 442 (615)
T TIGR00990 365 TQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVT 442 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHH
Confidence 667888889999999999999999999887543 57788889999999999999999999998864 3456677788888
Q ss_pred HHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHH------hHHHHHHHHHhc
Q 047359 300 QCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVA------TYDVLLDGLFKD 373 (440)
Q Consensus 300 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~------~~~~l~~~~~~~ 373 (440)
+.+.|++++|+..+++..+..+. +...++.+...+...|++++|++.|++..+.....+.. .++.....+...
T Consensus 443 ~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~ 521 (615)
T TIGR00990 443 QYKEGSIASSMATFRRCKKNFPE-APDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWK 521 (615)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHh
Confidence 99999999999999999876433 67788899999999999999999999998754321111 112222334457
Q ss_pred CcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcccHHHHHHHHHHHHHC
Q 047359 374 GRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLKELRKAMKNHDEMLKM 423 (440)
Q Consensus 374 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 423 (440)
|++++|.+++++..+.++.+..++..++..+.+.|++++|++.|++..+.
T Consensus 522 ~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 522 QDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 99999999999999988888889999999999999999999999998873
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.93 E-value=4.6e-23 Score=177.41 Aligned_cols=368 Identities=14% Similarity=0.078 Sum_probs=297.0
Q ss_pred hHhHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhccc---CCchhH-HHHHHHH
Q 047359 47 VSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSGKFEVVLGLLDSGI---YSSVMY-NLVIDFY 122 (440)
Q Consensus 47 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~-~~li~~~ 122 (440)
..+|..+...+-..|++++|+.+++.+++.. +-....|..+..++...|+.+.|.+.|.+.. |+.... +.+...+
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLl 194 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLL 194 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHH
Confidence 3567778888888889999999999888763 2256788888888999999998888887766 554443 3344455
Q ss_pred HhcCChhHHHHHHHHHhcCCCCCCc-hhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCcccccchHHHHHHHhhcCcH
Q 047359 123 SKKGDFGAAFDRLNEMCNGRNLTPG-FSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKT 201 (440)
Q Consensus 123 ~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 201 (440)
...|++++|...|.+..+ ..|. ...|+.|...+...|+.-.|+..|++..+.+ |+ +...|..|...|...+.+
T Consensus 195 ka~Grl~ea~~cYlkAi~---~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld--P~-f~dAYiNLGnV~ke~~~~ 268 (966)
T KOG4626|consen 195 KAEGRLEEAKACYLKAIE---TQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD--PN-FLDAYINLGNVYKEARIF 268 (966)
T ss_pred HhhcccchhHHHHHHHHh---hCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCC--Cc-chHHHhhHHHHHHHHhcc
Confidence 567888889888888866 4554 3477888888888899999999999888754 54 377888899999999999
Q ss_pred HHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 047359 202 YAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDV 281 (440)
Q Consensus 202 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 281 (440)
+.|...+.+.....+. ....+..+...|...|..+.|+..|++..+..+. -...|+.+..++-..|++.+|...+...
T Consensus 269 d~Avs~Y~rAl~lrpn-~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnka 346 (966)
T KOG4626|consen 269 DRAVSCYLRALNLRPN-HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKA 346 (966)
T ss_pred hHHHHHHHHHHhcCCc-chhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHH
Confidence 9999888887765443 4567777888888999999999999998887544 3567899999999999999999999998
Q ss_pred HHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcC-H
Q 047359 282 VERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLD-V 360 (440)
Q Consensus 282 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~ 360 (440)
.... +......+.|...+...|.++.|..+|....+-.+. -...++.|...|-..|++++|+..+++.++ ++|+ .
T Consensus 347 L~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fA 422 (966)
T KOG4626|consen 347 LRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFA 422 (966)
T ss_pred HHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHH
Confidence 8763 345567888899999999999999999988875333 345678888899999999999999999887 5565 4
Q ss_pred HhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcccHHHHHHHHHHHHHCCCCCCH
Q 047359 361 ATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDE 429 (440)
Q Consensus 361 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 429 (440)
..|+.+...|-..|+++.|++.+.++...+|.-..+++.|...|...|+..+|++-+++.++ ++||.
T Consensus 423 da~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDf 489 (966)
T KOG4626|consen 423 DALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDF 489 (966)
T ss_pred HHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCC
Confidence 58888999999999999999999999998888888899999999999999999999999888 67875
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.93 E-value=1.1e-22 Score=175.00 Aligned_cols=380 Identities=16% Similarity=0.156 Sum_probs=324.3
Q ss_pred ChHhHHHHHHHHHccCCcchHHHHHHHHHhcCCccChHhHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhH-HHHH
Q 047359 11 QSDALSLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTW-SLVA 89 (440)
Q Consensus 11 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~ 89 (440)
-..+|+.+...+...|++++|+.+++.+.+.. +.....|..+..++...|+.+.|.+.|.+.++. .|+.... ..+.
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lg 191 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLG 191 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--Ccchhhhhcchh
Confidence 35788889999999999999999999999875 346889999999999999999999999999885 5665543 3455
Q ss_pred HHHHhcCChHHHHHHHhccc---CC-chhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCch-hhHHHHHHHHHhcCCh
Q 047359 90 QILCRSGKFEVVLGLLDSGI---YS-SVMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGF-STYSSILDGARRYEKT 164 (440)
Q Consensus 90 ~~~~~~~~~~~a~~~~~~~~---~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~ 164 (440)
..+-..|++.+|...+.+.. |. ..+|+.|...+...|+...|+..|++..+ +.|+- ..|..|...|...+.+
T Consensus 192 nLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk---ldP~f~dAYiNLGnV~ke~~~~ 268 (966)
T KOG4626|consen 192 NLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK---LDPNFLDAYINLGNVYKEARIF 268 (966)
T ss_pred HHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc---CCCcchHHHhhHHHHHHHHhcc
Confidence 55666899999999988766 43 35699999999999999999999999977 77764 4888999999999999
Q ss_pred hhHHHHHHHHHhcCCCCcccccchHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHH
Q 047359 165 EVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYH 244 (440)
Q Consensus 165 ~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 244 (440)
++|...+.+..... |+. ..++..+...|...|+++.|++.+++..+..+. -+..|+.|..++-..|++.+|.+.|.
T Consensus 269 d~Avs~Y~rAl~lr--pn~-A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYn 344 (966)
T KOG4626|consen 269 DRAVSCYLRALNLR--PNH-AVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYN 344 (966)
T ss_pred hHHHHHHHHHHhcC--Ccc-hhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHH
Confidence 99999999887643 664 777888888999999999999999999987554 46789999999999999999999999
Q ss_pred HHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCc
Q 047359 245 LISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLD 324 (440)
Q Consensus 245 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 324 (440)
+....... .....+.+...+...|.+++|..+|....+.. +--...++.|...|-++|++++|...+++..+. +|+
T Consensus 345 kaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~ 420 (966)
T KOG4626|consen 345 KALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPT 420 (966)
T ss_pred HHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--Cch
Confidence 99887543 46678889999999999999999999998753 334557888999999999999999999999885 444
Q ss_pred -hhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHH
Q 047359 325 -SFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSR 403 (440)
Q Consensus 325 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 403 (440)
...|+.+...|-..|+.+.|.+.+.+.+..++. -...++.|...|-..|++.+|+.-++...+..|..+.++..++.+
T Consensus 421 fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt-~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~ 499 (966)
T KOG4626|consen 421 FADALSNMGNTYKEMGDVSAAIQCYTRAIQINPT-FAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHC 499 (966)
T ss_pred HHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcH-HHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHH
Confidence 457888999999999999999999999985432 356889999999999999999999999999999988888877776
Q ss_pred HH
Q 047359 404 LC 405 (440)
Q Consensus 404 ~~ 405 (440)
+-
T Consensus 500 lq 501 (966)
T KOG4626|consen 500 LQ 501 (966)
T ss_pred HH
Confidence 54
No 13
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.93 E-value=1.6e-22 Score=181.29 Aligned_cols=304 Identities=14% Similarity=0.063 Sum_probs=222.6
Q ss_pred HHHHHhcCChhHHHHHHHHHhcCCCCCCc-hhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCc-ccccchHHHHHHHh
Q 047359 119 IDFYSKKGDFGAAFDRLNEMCNGRNLTPG-FSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPK-HFLSGNDYVIQKLS 196 (440)
Q Consensus 119 i~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~ 196 (440)
...+...|++++|...|.++.+ ..|+ ..++..+...+...|++++|..+++.+...+..+. .....+..++..|.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~ 118 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLK---VDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYL 118 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHh---cCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 3345667788888888888866 3343 44677777778888888888888887776532211 00245667788888
Q ss_pred hcCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcCChH
Q 047359 197 DMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRD----SDYYAFVNVLCKEHQPE 272 (440)
Q Consensus 197 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~ 272 (440)
+.|++++|..+|+++.+..+ ++..++..++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+.+.|+++
T Consensus 119 ~~g~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 197 (389)
T PRK11788 119 KAGLLDRAEELFLQLVDEGD-FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLD 197 (389)
T ss_pred HCCCHHHHHHHHHHHHcCCc-chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHH
Confidence 88888888888888876533 35677888888888888888888888888776543321 23455666777888899
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHH
Q 047359 273 EVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIE 352 (440)
Q Consensus 273 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 352 (440)
+|...++++.+.. +.+...+..+...+.+.|++++|.+.++++...++.....+++.++.+|...|++++|.+.++++.
T Consensus 198 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 276 (389)
T PRK11788 198 AARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRAL 276 (389)
T ss_pred HHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9998888887753 334556777788888889999999999988876444335567788888889999999999998888
Q ss_pred hccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHh---cccHHHHHHHHHHHHHCCCCCCH
Q 047359 353 KLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCH---LKELRKAMKNHDEMLKMGHKPDE 429 (440)
Q Consensus 353 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~~~~p~~ 429 (440)
+. .|+...+..++..+.+.|++++|..+++++.+..|.+. .+..++..+.. .|+.++++.++++|.+.++.|+.
T Consensus 277 ~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 277 EE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred Hh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 75 35556667888888899999999999988888765543 55555655553 55888899999988887766665
Q ss_pred H
Q 047359 430 A 430 (440)
Q Consensus 430 ~ 430 (440)
.
T Consensus 354 ~ 354 (389)
T PRK11788 354 R 354 (389)
T ss_pred C
Confidence 3
No 14
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.93 E-value=1.4e-22 Score=181.64 Aligned_cols=298 Identities=11% Similarity=0.016 Sum_probs=195.5
Q ss_pred HHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhccc--CC------chhHHHHHHHHHhcCC
Q 047359 56 ALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSGKFEVVLGLLDSGI--YS------SVMYNLVIDFYSKKGD 127 (440)
Q Consensus 56 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~------~~~~~~li~~~~~~~~ 127 (440)
.+...|++++|...|+++.+.+ +.+..++..+...+...|++++|..+++.+. ++ ...+..+...|.+.|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 4456677778888888877753 2345567777777777777777777777665 21 1346677777888888
Q ss_pred hhHHHHHHHHHhcCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCcc--cccchHHHHHHHhhcCcHHHHH
Q 047359 128 FGAAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKH--FLSGNDYVIQKLSDMGKTYAAE 205 (440)
Q Consensus 128 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~ 205 (440)
+++|..+|+++.+ . .+++..++..++..+.+.|++++|.+.++.+.+.+..+.. ....+..+...+.+.|++++|.
T Consensus 123 ~~~A~~~~~~~l~-~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 123 LDRAEELFLQLVD-E-GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred HHHHHHHHHHHHc-C-CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 8888888888865 2 2234567777788888888888888888887775532221 0113345566667777777777
Q ss_pred HHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 047359 206 MIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERG 285 (440)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 285 (440)
..++++.+..+. +...+..+...+.+.|++++|.++++++.+.+......++..++.+|...|++++|...++.+.+..
T Consensus 201 ~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 279 (389)
T PRK11788 201 ALLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY 279 (389)
T ss_pred HHHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 777777665432 3456666667777777777777777777665433234456666777777777777777777766642
Q ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHc---CCcHHHHHHHHHHHHhccCCcCHH
Q 047359 286 YIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCS---NRQIDKAIALHIKIEKLKGSLDVA 361 (440)
Q Consensus 286 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~p~~~ 361 (440)
|+...+..++..+.+.|++++|..+++++.+. .|+...++.++..+.. .|+.+++..+++++.+.++.|++.
T Consensus 280 --p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 280 --PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred --CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 45455566667777777777777777776654 4566666666655543 346677777777777666555544
No 15
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.92 E-value=9.2e-21 Score=181.73 Aligned_cols=414 Identities=12% Similarity=0.023 Sum_probs=313.7
Q ss_pred CCCChHhHHHHHHHHHccCCcchHHHHHHHHHhcCCccChHhHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHH
Q 047359 8 RDSQSDALSLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSL 87 (440)
Q Consensus 8 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 87 (440)
-+.++....-.+......|+.++|+++++...... +.+...+..+...+...|++++|.+++++..+.. +.+...+..
T Consensus 11 ~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~ 88 (765)
T PRK10049 11 SALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRG 88 (765)
T ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 34556666677888899999999999999998633 4556678999999999999999999999998763 345677888
Q ss_pred HHHHHHhcCChHHHHHHHhccc---CCchhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCch-hhHHHHHHHHHhcCC
Q 047359 88 VAQILCRSGKFEVVLGLLDSGI---YSSVMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGF-STYSSILDGARRYEK 163 (440)
Q Consensus 88 l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~ 163 (440)
+..++...|+.++|+..+++.. |+...+..+..++...|+.++|+..++++.+ ..|+. ..+..+..++...+.
T Consensus 89 la~~l~~~g~~~eA~~~l~~~l~~~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~---~~P~~~~~~~~la~~l~~~~~ 165 (765)
T PRK10049 89 LILTLADAGQYDEALVKAKQLVSGAPDKANLLALAYVYKRAGRHWDELRAMTQALP---RAPQTQQYPTEYVQALRNNRL 165 (765)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCC
Confidence 8899999999999999999987 4333388888899999999999999999987 55654 455667778888899
Q ss_pred hhhHHHHHHHHHhcCCCCccc----ccchHHHHHHHh-----hcCcH---HHHHHHHHHHHhc-CCCCCHH-hH----HH
Q 047359 164 TEVSDRIVGLMVEKKLLPKHF----LSGNDYVIQKLS-----DMGKT---YAAEMIFKRACDE-KIELQDD-TC----GC 225 (440)
Q Consensus 164 ~~~a~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~-----~~~~~---~~a~~~~~~~~~~-~~~~~~~-~~----~~ 225 (440)
.+.|.+.++.... .|+.. ......++.... ..+++ ++|+..++.+.+. ...|+.. .+ ..
T Consensus 166 ~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d 242 (765)
T PRK10049 166 SAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARID 242 (765)
T ss_pred hHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHH
Confidence 9999998876654 12200 001112222222 22234 7788888888754 2222221 11 11
Q ss_pred HHHHHhhhccHHHHHHHHHHHHHcCCC-CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---ChhhHHHHHHHHH
Q 047359 226 MLKALSKEGRVKEAIQIYHLISERGIT-VRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIP---CAMELSRFVASQC 301 (440)
Q Consensus 226 l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~ 301 (440)
.+..+...|++++|+..|+.+.+.+.. |+. ....+..++...|++++|..+++.+.+..... .......+..++.
T Consensus 243 ~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~ 321 (765)
T PRK10049 243 RLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLL 321 (765)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHH
Confidence 134456779999999999999987643 322 22335778999999999999999987653111 1234566677788
Q ss_pred cCCCHHHHHHHHHHHHhcCC-----------CCc---hhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHH
Q 047359 302 GKGKWKEVEELLSAVLDKGL-----------LLD---SFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLL 367 (440)
Q Consensus 302 ~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 367 (440)
..|++++|..+++.+....+ .|+ ...+..+...+...|+.++|++.++++....+. +...+..+.
T Consensus 322 ~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~-n~~l~~~lA 400 (765)
T PRK10049 322 ESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG-NQGLRIDYA 400 (765)
T ss_pred hcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 99999999999999987632 122 124456777889999999999999999887544 678889999
Q ss_pred HHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcccHHHHHHHHHHHHHCCCCCCHHHHH
Q 047359 368 DGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDEATYK 433 (440)
Q Consensus 368 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~ 433 (440)
..+...|++++|++.++++.+..|.+...+...+..+.+.|++++|..+++++++ ..|+.....
T Consensus 401 ~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~--~~Pd~~~~~ 464 (765)
T PRK10049 401 SVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA--REPQDPGVQ 464 (765)
T ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCCCHHHH
Confidence 9999999999999999999999988888999999999999999999999999998 467765443
No 16
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.92 E-value=6.1e-20 Score=184.15 Aligned_cols=223 Identities=12% Similarity=0.059 Sum_probs=111.6
Q ss_pred HHHhhcCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCC-hhhH------------H
Q 047359 193 QKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVR-DSDY------------Y 259 (440)
Q Consensus 193 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~------------~ 259 (440)
..+...|++++|+..|++..+..+. +...+..+..++.+.|++++|+..|++..+...... ...+ .
T Consensus 277 ~~~~~~g~~~~A~~~l~~aL~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 277 LAAVDSGQGGKAIPELQQAVRANPK-DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 3445556666666666666654433 455556666666666666666666666655432211 1111 1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHH-----
Q 047359 260 AFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEY----- 334 (440)
Q Consensus 260 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~----- 334 (440)
.....+.+.|++++|...++++.+.. +.+...+..+...+...|++++|++.|+++.+..+. +...+..+...
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~~~~ 433 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYRQQS 433 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcC
Confidence 11233455666666666666666543 223444555556666666666666666666554322 23333333333
Q ss_pred -------------------------------------HHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHH
Q 047359 335 -------------------------------------YCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRME 377 (440)
Q Consensus 335 -------------------------------------~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 377 (440)
+...|++++|++.+++..+..+. +...+..+...|.+.|+++
T Consensus 434 ~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~ 512 (1157)
T PRK11447 434 PEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRS 512 (1157)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHH
Confidence 33445555555555555443222 3334444444555555555
Q ss_pred HHHHHHHHHHHcCCCchhhHHHHHHHHHhcccHHHHHHHHHH
Q 047359 378 EAVRIFDYMKELKVVSSSSFVIVVSRLCHLKELRKAMKNHDE 419 (440)
Q Consensus 378 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 419 (440)
+|...++++.+..|.++..+..+...+...|++++|+..+++
T Consensus 513 ~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~ 554 (1157)
T PRK11447 513 QADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNT 554 (1157)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 555555555444444444444444444444555555554444
No 17
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.92 E-value=5.2e-20 Score=172.90 Aligned_cols=358 Identities=11% Similarity=0.015 Sum_probs=240.6
Q ss_pred HccCCcchHHHHHHHHHhcC--CccChHhHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHH
Q 047359 23 SHKGLFMDGLEVYRMMRVYG--FVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSGKFEV 100 (440)
Q Consensus 23 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 100 (440)
.++.+++.---+|....+.- -..+..-...++..+.+.|++++|..+++........ +...+..++.+....|+++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHH
Confidence 34455555444444433210 0112233445566677778888888888877765322 34455555566667788888
Q ss_pred HHHHHhccc---C-CchhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCc-hhhHHHHHHHHHhcCChhhHHHHHHHHH
Q 047359 101 VLGLLDSGI---Y-SSVMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPG-FSTYSSILDGARRYEKTEVSDRIVGLMV 175 (440)
Q Consensus 101 a~~~~~~~~---~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 175 (440)
|...++++. | +...+..+...+.+.|++++|...+++..+ +.|+ ...+..+...+...|++++|...++.+.
T Consensus 95 A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~---l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~ 171 (656)
T PRK15174 95 VLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWL---AFSGNSQIFALHLRTLVLMDKELQAISLARTQA 171 (656)
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 888887776 3 445677777778888888888888888866 4454 4466677777888888888888887776
Q ss_pred hcCCCCcccccchHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCCh
Q 047359 176 EKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRD 255 (440)
Q Consensus 176 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 255 (440)
.....+ ...+..+ ..+...|++++|...++.+.+....++...+..+..++...|++++|...+++..+.... +.
T Consensus 172 ~~~P~~---~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~ 246 (656)
T PRK15174 172 QEVPPR---GDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GA 246 (656)
T ss_pred HhCCCC---HHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CH
Confidence 654222 2233333 346777888888888888776654444445555566777788888888888888776533 55
Q ss_pred hhHHHHHHHHHhcCChHH----HHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHH
Q 047359 256 SDYYAFVNVLCKEHQPEE----VCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSL 331 (440)
Q Consensus 256 ~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 331 (440)
..+..+...+...|++++ |...++.+.+.. +.+...+..+...+...|++++|...+++.....+. +...+..+
T Consensus 247 ~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~L 324 (656)
T PRK15174 247 ALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMY 324 (656)
T ss_pred HHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 667777778888888775 678888877653 335567777778888888888888888888776543 45566677
Q ss_pred HHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCC
Q 047359 332 MEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVV 392 (440)
Q Consensus 332 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 392 (440)
..++...|++++|...++++.+.++. +...+..+..++...|+.++|...|+++.+..|.
T Consensus 325 a~~l~~~G~~~eA~~~l~~al~~~P~-~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 325 ARALRQVGQYTAASDEFVQLAREKGV-TSKWNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 77888888888888888888765332 2233344566777888888888888888777666
No 18
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.92 E-value=4e-20 Score=173.69 Aligned_cols=330 Identities=10% Similarity=0.022 Sum_probs=268.1
Q ss_pred HHHHHHHHHccCCcchHHHHHHHHHhcCCccChHhHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 047359 15 LSLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILCR 94 (440)
Q Consensus 15 ~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 94 (440)
.-.++..+.+.|++++|..+++....... -+...+..++.+....|+++.|...++++.+.. +.+...+..+...+..
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p-~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~ 122 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAK-NGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLK 122 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCC-CchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 34467788899999999999999998753 345566666677788999999999999998864 3366788889999999
Q ss_pred cCChHHHHHHHhccc---C-CchhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCchh-hHHHHHHHHHhcCChhhHHH
Q 047359 95 SGKFEVVLGLLDSGI---Y-SSVMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFS-TYSSILDGARRYEKTEVSDR 169 (440)
Q Consensus 95 ~~~~~~a~~~~~~~~---~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~ 169 (440)
.|++++|...+++.. | +...+..+...+...|++++|...++.+.. ..|+.. .+..+ ..+...|++++|..
T Consensus 123 ~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~---~~P~~~~a~~~~-~~l~~~g~~~eA~~ 198 (656)
T PRK15174 123 SKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQ---EVPPRGDMIATC-LSFLNKSRLPEDHD 198 (656)
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH---hCCCCHHHHHHH-HHHHHcCCHHHHHH
Confidence 999999999999987 3 456788899999999999999999998865 334333 33333 34788999999999
Q ss_pred HHHHHHhcCCCCcccccchHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHH----HHHHHHH
Q 047359 170 IVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKE----AIQIYHL 245 (440)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~ 245 (440)
.++.+.+....++ ......+...+.+.|++++|...+++.....+. +...+..+...+...|++++ |...|++
T Consensus 199 ~~~~~l~~~~~~~--~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~ 275 (656)
T PRK15174 199 LARALLPFFALER--QESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRH 275 (656)
T ss_pred HHHHHHhcCCCcc--hhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHH
Confidence 9999887653333 444555678899999999999999999987655 67788889999999999986 8999999
Q ss_pred HHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCch
Q 047359 246 ISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDS 325 (440)
Q Consensus 246 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 325 (440)
..+..+. +...+..+...+...|++++|...++...+.. +.+...+..+...+...|++++|...++.+...++. +.
T Consensus 276 Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~-~~ 352 (656)
T PRK15174 276 ALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGV-TS 352 (656)
T ss_pred HHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-ch
Confidence 9887643 67788999999999999999999999999864 334566777888999999999999999999876433 22
Q ss_pred hhhHHHHHHHHcCCcHHHHHHHHHHHHhccC
Q 047359 326 FCCSSLMEYYCSNRQIDKAIALHIKIEKLKG 356 (440)
Q Consensus 326 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 356 (440)
..+..+..++...|+.++|...|++..+..+
T Consensus 353 ~~~~~~a~al~~~G~~deA~~~l~~al~~~P 383 (656)
T PRK15174 353 KWNRYAAAALLQAGKTSEAESVFEHYIQARA 383 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCh
Confidence 3344456788999999999999999987643
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.90 E-value=5.4e-19 Score=166.67 Aligned_cols=376 Identities=11% Similarity=-0.051 Sum_probs=278.0
Q ss_pred CCCChHhHHHHHHHHHccCCcchHHHHHHHHHhcCCccChHhHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHH
Q 047359 8 RDSQSDALSLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSL 87 (440)
Q Consensus 8 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 87 (440)
..|+...|..+..+|.+.|++++|++.++...+.. +.+...|..+..++...|++++|..-|......+...+.. ...
T Consensus 156 ~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~-~~~ 233 (615)
T TIGR00990 156 CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQ-SAQ 233 (615)
T ss_pred cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHH-HHH
Confidence 45788889999999999999999999999999875 4467789999999999999999998887665432111111 111
Q ss_pred HHHHHHhcCChHHHHHHHhcccCCch---------------------------------hHHHHHHHH---HhcCChhHH
Q 047359 88 VAQILCRSGKFEVVLGLLDSGIYSSV---------------------------------MYNLVIDFY---SKKGDFGAA 131 (440)
Q Consensus 88 l~~~~~~~~~~~~a~~~~~~~~~~~~---------------------------------~~~~li~~~---~~~~~~~~a 131 (440)
++..+........+...++.-.++.. .+..+...+ ...+++++|
T Consensus 234 ~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A 313 (615)
T TIGR00990 234 AVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEA 313 (615)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHH
Confidence 11111111111222222222111000 011111111 223688999
Q ss_pred HHHHHHHhcCCCCCCc-hhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCcccccchHHHHHHHhhcCcHHHHHHHHHH
Q 047359 132 FDRLNEMCNGRNLTPG-FSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKR 210 (440)
Q Consensus 132 ~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 210 (440)
.+.|+...+.....|+ ...+..+...+...|++++|...+++.++.. |+. ...|..+...+...|++++|...|++
T Consensus 314 ~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~--P~~-~~~~~~la~~~~~~g~~~eA~~~~~~ 390 (615)
T TIGR00990 314 ARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD--PRV-TQSYIKRASMNLELGDPDKAEEDFDK 390 (615)
T ss_pred HHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCc-HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999872223343 4567788888889999999999999998864 543 56788899999999999999999999
Q ss_pred HHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh
Q 047359 211 ACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCA 290 (440)
Q Consensus 211 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 290 (440)
..+..+. +...|..+...+...|++++|...|++..+..+. +...+..+...+.+.|++++|...++...+.. +.+.
T Consensus 391 al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~ 467 (615)
T TIGR00990 391 ALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAP 467 (615)
T ss_pred HHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCh
Confidence 9887654 6788999999999999999999999999987643 56777888889999999999999999998753 4456
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhh------hHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHH
Q 047359 291 MELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFC------CSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYD 364 (440)
Q Consensus 291 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~ 364 (440)
..++.+...+...|++++|.+.|++........+... ++.....+...|++++|.+++++..+..+. +...+.
T Consensus 468 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~-~~~a~~ 546 (615)
T TIGR00990 468 DVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPE-CDIAVA 546 (615)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC-cHHHHH
Confidence 7888899999999999999999999987643321111 122222344579999999999999886533 455788
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHHcCCC
Q 047359 365 VLLDGLFKDGRMEEAVRIFDYMKELKVV 392 (440)
Q Consensus 365 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 392 (440)
.+...+.+.|++++|++.|++..+....
T Consensus 547 ~la~~~~~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 547 TMAQLLLQQGDVDEALKLFERAAELART 574 (615)
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999877544
No 20
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.90 E-value=1.6e-18 Score=163.47 Aligned_cols=401 Identities=11% Similarity=0.032 Sum_probs=286.6
Q ss_pred HHHHHccCCcchHHHHHHHHHhcCCccCh--HhHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 047359 19 LDCYSHKGLFMDGLEVYRMMRVYGFVPAV--SACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSG 96 (440)
Q Consensus 19 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 96 (440)
+-...+.|+++.|+..|++..+.. |+. ..+ .++..+...|+.++|+..+++.... -+........+...+...|
T Consensus 41 aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~g 116 (822)
T PRK14574 41 LIIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEK 116 (822)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcC
Confidence 344568888889999998888764 443 233 7777778888888998888888721 1112233333456778888
Q ss_pred ChHHHHHHHhccc---C-CchhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCchhhHHHHHHHHHhcCChhhHHHHHH
Q 047359 97 KFEVVLGLLDSGI---Y-SSVMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVG 172 (440)
Q Consensus 97 ~~~~a~~~~~~~~---~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 172 (440)
++++|+++|+++. | +...+..++..+...++.++|++.++++.+ ..|+...+..++..+...++..+|++.++
T Consensus 117 dyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~---~dp~~~~~l~layL~~~~~~~~~AL~~~e 193 (822)
T PRK14574 117 RWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAE---RDPTVQNYMTLSYLNRATDRNYDALQASS 193 (822)
T ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcc---cCcchHHHHHHHHHHHhcchHHHHHHHHH
Confidence 9999999888887 3 445566777888888888889888888866 56666666444444444566656888888
Q ss_pred HHHhcCCCCcccccchHHHHHHHhhcCcHHHHHHHH--------------------------------------------
Q 047359 173 LMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIF-------------------------------------------- 208 (440)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~-------------------------------------------- 208 (440)
++.+.. |++ ...+..+..++.+.|-...|.++.
T Consensus 194 kll~~~--P~n-~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~a 270 (822)
T PRK14574 194 EAVRLA--PTS-EEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKA 270 (822)
T ss_pred HHHHhC--CCC-HHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHH
Confidence 888765 442 444444555555544433333332
Q ss_pred ----HHHHhc-CCCCCHH-----hHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHH
Q 047359 209 ----KRACDE-KIELQDD-----TCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLL 278 (440)
Q Consensus 209 ----~~~~~~-~~~~~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 278 (440)
+.+... +..|... ...-.+-++...|++.++++.|+.+...+.+....+-..+.++|...+++++|..++
T Consensus 271 la~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~ 350 (822)
T PRK14574 271 LADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPIL 350 (822)
T ss_pred HHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 222221 1112211 122345567788999999999999998887666678888999999999999999999
Q ss_pred HHHHHcC-----CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCC-----------CCch--h-hhHHHHHHHHcCC
Q 047359 279 RDVVERG-----YIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGL-----------LLDS--F-CCSSLMEYYCSNR 339 (440)
Q Consensus 279 ~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~~--~-~~~~l~~~~~~~~ 339 (440)
+.+.... .+++......|..++...+++++|..+++.+.+..+ .||. . .+..++..+...|
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~g 430 (822)
T PRK14574 351 SSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALN 430 (822)
T ss_pred HHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcC
Confidence 9986643 122333357788889999999999999999987422 1221 1 2334566788899
Q ss_pred cHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcccHHHHHHHHHH
Q 047359 340 QIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLKELRKAMKNHDE 419 (440)
Q Consensus 340 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 419 (440)
++.+|++.++++....+. |......+...+...|.+.+|.+.++.+....|.+..+....+.++...|++++|..+.+.
T Consensus 431 dl~~Ae~~le~l~~~aP~-n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~ 509 (822)
T PRK14574 431 DLPTAQKKLEDLSSTAPA-NQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDD 509 (822)
T ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 999999999999877555 8888889999999999999999999888888888888888999999999999999999988
Q ss_pred HHHCCCCCCHHHH
Q 047359 420 MLKMGHKPDEATY 432 (440)
Q Consensus 420 m~~~~~~p~~~t~ 432 (440)
..+ ..|+....
T Consensus 510 l~~--~~Pe~~~~ 520 (822)
T PRK14574 510 VIS--RSPEDIPS 520 (822)
T ss_pred HHh--hCCCchhH
Confidence 877 45665443
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.89 E-value=1.1e-18 Score=167.43 Aligned_cols=378 Identities=9% Similarity=-0.045 Sum_probs=285.2
Q ss_pred CCChHhHHHHHHHHHccCCcchHHHHHHHHHhcCCccChHhHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHH
Q 047359 9 DSQSDALSLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLV 88 (440)
Q Consensus 9 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 88 (440)
+.+...+..+...+...|++++|.++|+...+.. +.+...+..+...+...|++++|...++++.+.. +.+.. +..+
T Consensus 46 ~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~l 122 (765)
T PRK10049 46 QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLAL 122 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHH
Confidence 3445568889999999999999999999998864 4567778888889999999999999999998863 34556 8888
Q ss_pred HHHHHhcCChHHHHHHHhccc---C-CchhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCch------hhHHHHHHHH
Q 047359 89 AQILCRSGKFEVVLGLLDSGI---Y-SSVMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGF------STYSSILDGA 158 (440)
Q Consensus 89 ~~~~~~~~~~~~a~~~~~~~~---~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~------~~~~~l~~~~ 158 (440)
..++...|+.++|+..++++. | +...+..+...+...+..++|++.++.... .|+. .....++...
T Consensus 123 a~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~----~p~~~~~l~~~~~~~~~r~~ 198 (765)
T PRK10049 123 AYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL----TPAEKRDLEADAAAELVRLS 198 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC----CHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999987 4 444566778888889999999999987643 2332 1112222222
Q ss_pred H-----hcCCh---hhHHHHHHHHHhc-CCCCccccc---chHHHHHHHhhcCcHHHHHHHHHHHHhcCCC-CCHHhHHH
Q 047359 159 R-----RYEKT---EVSDRIVGLMVEK-KLLPKHFLS---GNDYVIQKLSDMGKTYAAEMIFKRACDEKIE-LQDDTCGC 225 (440)
Q Consensus 159 ~-----~~~~~---~~a~~~~~~~~~~-~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ 225 (440)
. ..+++ ++|+..++.+.+. ...|+.... .....+..+...|+.++|+..|+.+.+.+.. |+. .-..
T Consensus 199 ~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~ 277 (765)
T PRK10049 199 FMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRW 277 (765)
T ss_pred cccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHH
Confidence 2 12233 6788888888864 233331011 1111134456779999999999999887643 332 2222
Q ss_pred HHHHHhhhccHHHHHHHHHHHHHcCCCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-----------CCC--
Q 047359 226 MLKALSKEGRVKEAIQIYHLISERGITV---RDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGY-----------IPC-- 289 (440)
Q Consensus 226 l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~-- 289 (440)
+..+|...|++++|+..|+++.+..... .......+..++...|++++|..+++.+.+... .|+
T Consensus 278 la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~ 357 (765)
T PRK10049 278 VASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDD 357 (765)
T ss_pred HHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCch
Confidence 5778999999999999999988754321 124466677788999999999999999987531 122
Q ss_pred -hhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHH
Q 047359 290 -AMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLD 368 (440)
Q Consensus 290 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 368 (440)
...+..+...+...|++++|+++++++....+. +...+..+...+...|++++|++.+++.....+. +...+..++.
T Consensus 358 ~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~-n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd-~~~l~~~~a~ 435 (765)
T PRK10049 358 WLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG-NQGLRIDYASVLQARGWPRAAENELKKAEVLEPR-NINLEVEQAW 435 (765)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHH
Confidence 124456777888899999999999999887554 6788889999999999999999999999986433 4567777788
Q ss_pred HHHhcCcHHHHHHHHHHHHHcCCCchhh
Q 047359 369 GLFKDGRMEEAVRIFDYMKELKVVSSSS 396 (440)
Q Consensus 369 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 396 (440)
.+.+.|++++|..+++++.+..|.++.+
T Consensus 436 ~al~~~~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 436 TALDLQEWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 8999999999999999999998886644
No 22
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.87 E-value=6.5e-17 Score=155.81 Aligned_cols=403 Identities=10% Similarity=0.013 Sum_probs=273.6
Q ss_pred CChHhHHHH-HHHHHccCCcchHHHHHHHHHhcCCccChHhHHHHHHHHHh-ccchhHHHHHHHHHHHcCCCCChhhHHH
Q 047359 10 SQSDALSLV-LDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYR-QNEIRLASCLYGAMVRDGVSPNKFTWSL 87 (440)
Q Consensus 10 ~~~~~~~~l-i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 87 (440)
|++.+.... .+.|.+.|++++|++++..+.+.+ +.+......+..++.. .++ +.+..+++. .++.+...+..
T Consensus 179 ~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~a 252 (987)
T PRK09782 179 PEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRIT 252 (987)
T ss_pred CCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHH
Confidence 345555555 889999999999999999999886 3455556666667766 356 777777553 23357778888
Q ss_pred HHHHHHhcCChHHHHHHHhccc------CCchhH------------------------------HHHHHHHHhcCC----
Q 047359 88 VAQILCRSGKFEVVLGLLDSGI------YSSVMY------------------------------NLVIDFYSKKGD---- 127 (440)
Q Consensus 88 l~~~~~~~~~~~~a~~~~~~~~------~~~~~~------------------------------~~li~~~~~~~~---- 127 (440)
+...|.+.|+.++|.++++++. |...+| -.++..+.+.++
T Consensus 253 la~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (987)
T PRK09782 253 YATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAA 332 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHH
Confidence 8888889999988888888776 111111 011222333333
Q ss_pred -----------------------------------------------------------hhHHHHHHHHHhc-CCCCCCc
Q 047359 128 -----------------------------------------------------------FGAAFDRLNEMCN-GRNLTPG 147 (440)
Q Consensus 128 -----------------------------------------------------------~~~a~~~~~~~~~-~~~~~p~ 147 (440)
.++|.++|..... ...-.++
T Consensus 333 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 412 (987)
T PRK09782 333 QKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLS 412 (987)
T ss_pred HHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccC
Confidence 3333333333322 0001111
Q ss_pred hhhHHHHHHHHHhcCCh---hhHHHH----------------------HHHHHhc-CCCCc-ccccchHHHHHHHhhcCc
Q 047359 148 FSTYSSILDGARRYEKT---EVSDRI----------------------VGLMVEK-KLLPK-HFLSGNDYVIQKLSDMGK 200 (440)
Q Consensus 148 ~~~~~~l~~~~~~~~~~---~~a~~~----------------------~~~~~~~-~~~~~-~~~~~~~~l~~~~~~~~~ 200 (440)
......++..+.+.+.. .++..+ .+..... +..|+ .....|..+..++.. ++
T Consensus 413 ~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~ 491 (987)
T PRK09782 413 QTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TL 491 (987)
T ss_pred HHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CC
Confidence 11222444444444331 111111 1111111 11122 015566667777766 78
Q ss_pred HHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 047359 201 TYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRD 280 (440)
Q Consensus 201 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 280 (440)
.++|...+.+..... |+......+...+...|++++|...|+++... .|+...+..+..++.+.|++++|...++.
T Consensus 492 ~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~q 567 (987)
T PRK09782 492 PGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQ 567 (987)
T ss_pred cHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 888888777776654 44444444455556899999999999987664 23444566677788899999999999999
Q ss_pred HHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCH
Q 047359 281 VVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDV 360 (440)
Q Consensus 281 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 360 (440)
..+.+ +++...+..+.......|++++|...+++..+.. |+...+..+..++.+.|+.++|+..+++.....+. +.
T Consensus 568 AL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd-~~ 643 (987)
T PRK09782 568 AEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALELEPN-NS 643 (987)
T ss_pred HHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CH
Confidence 98764 2333333344444455699999999999998764 46778888999999999999999999999987554 66
Q ss_pred HhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcccHHHHHHHHHHHHHCCCCCCH
Q 047359 361 ATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDE 429 (440)
Q Consensus 361 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 429 (440)
..+..+..++...|+.++|+..++++.+..|.++..+..+..++...|++++|+..+++..+ +.|+.
T Consensus 644 ~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~--l~P~~ 710 (987)
T PRK09782 644 NYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVID--DIDNQ 710 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCC
Confidence 78888888999999999999999999999988999999999999999999999999999987 45654
No 23
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.85 E-value=6e-17 Score=147.10 Aligned_cols=410 Identities=10% Similarity=0.035 Sum_probs=269.0
Q ss_pred CCChHhHHHHHHHHHccCCcchHHHHHHHHHhcCCc--cChHhHHHHHHHHHhccchhHHHHHHHHHHHcCCCCCh--hh
Q 047359 9 DSQSDALSLVLDCYSHKGLFMDGLEVYRMMRVYGFV--PAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNK--FT 84 (440)
Q Consensus 9 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~ 84 (440)
.-|+.+.+.|...|.-.|+++.++.+.+.+...... .-...|-.+.+++-..|++++|...|.+..+.. |+. ..
T Consensus 267 ~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~ 344 (1018)
T KOG2002|consen 267 NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNFVLP 344 (1018)
T ss_pred CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC--CCCcccc
Confidence 456788888999999999999999998888764321 123457788899999999999999998887753 443 44
Q ss_pred HHHHHHHHHhcCChHHHHHHHhccc---CC-chhHHHHHHHHHhcC----ChhHHHHHHHHHhcCCCCCCchhhHHHHHH
Q 047359 85 WSLVAQILCRSGKFEVVLGLLDSGI---YS-SVMYNLVIDFYSKKG----DFGAAFDRLNEMCNGRNLTPGFSTYSSILD 156 (440)
Q Consensus 85 ~~~l~~~~~~~~~~~~a~~~~~~~~---~~-~~~~~~li~~~~~~~----~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 156 (440)
+..+.+.+.+.|+++.+...|+.+. |+ ..+...|...|...+ ..+.|..++.+..+ . .+.|...|..+..
T Consensus 345 ~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~-~-~~~d~~a~l~laq 422 (1018)
T KOG2002|consen 345 LVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLE-Q-TPVDSEAWLELAQ 422 (1018)
T ss_pred ccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHh-c-ccccHHHHHHHHH
Confidence 5667888999999999999888876 43 445555666666554 44566666666654 1 1235556666666
Q ss_pred HHHhcCChhhHHHHHHHHH----hcCCCCcccccchHHHHHHHhhcCcHHHHHHHHHHHHhc---CCCCCH------HhH
Q 047359 157 GARRYEKTEVSDRIVGLMV----EKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDE---KIELQD------DTC 223 (440)
Q Consensus 157 ~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~------~~~ 223 (440)
.+-...-+. ++..+..+. ..+..+. +...|.+...+...|++..|...|...... ...++. .+-
T Consensus 423 l~e~~d~~~-sL~~~~~A~d~L~~~~~~ip--~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~ 499 (1018)
T KOG2002|consen 423 LLEQTDPWA-SLDAYGNALDILESKGKQIP--PEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLK 499 (1018)
T ss_pred HHHhcChHH-HHHHHHHHHHHHHHcCCCCC--HHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHH
Confidence 554433333 255544433 2333333 667777777777777777777777776554 122222 122
Q ss_pred HHHHHHHhhhccHHHHHHHHHHHHHcCCC---------------------------------CChhhHHHHHHHHHhcCC
Q 047359 224 GCMLKALSKEGRVKEAIQIYHLISERGIT---------------------------------VRDSDYYAFVNVLCKEHQ 270 (440)
Q Consensus 224 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---------------------------------~~~~~~~~l~~~~~~~~~ 270 (440)
..+...+-..++.+.|.+.|..+.+..+. .++..+..+...+.+...
T Consensus 500 YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~ 579 (1018)
T KOG2002|consen 500 YNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSE 579 (1018)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhh
Confidence 22444444555666666666665554211 122223333333444444
Q ss_pred hHHHHHHHHHHHHc-CCCCChhhHHHHHHHHHc------------CCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHc
Q 047359 271 PEEVCGLLRDVVER-GYIPCAMELSRFVASQCG------------KGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCS 337 (440)
Q Consensus 271 ~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 337 (440)
+..|.+-|..+.+. ...+|..+.-.|.+.|.. .+..++|+++|.++++..+. |...-|.+.-.++.
T Consensus 580 ~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~ 658 (1018)
T KOG2002|consen 580 WKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAE 658 (1018)
T ss_pred hcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhh
Confidence 44444433333322 112344444444444432 24467888888888887665 77788888888899
Q ss_pred CCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCC--chhhHHHHHHHHHhcccHHHHHH
Q 047359 338 NRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVV--SSSSFVIVVSRLCHLKELRKAMK 415 (440)
Q Consensus 338 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~ 415 (440)
.|++.+|..+|.+..+.... ...+|-.+.++|..+|++..|+++|+...+...+ ++.+...|.+++.+.|++.+|.+
T Consensus 659 kg~~~~A~dIFsqVrEa~~~-~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~ 737 (1018)
T KOG2002|consen 659 KGRFSEARDIFSQVREATSD-FEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKE 737 (1018)
T ss_pred ccCchHHHHHHHHHHHHHhh-CCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHH
Confidence 99999999999999887543 5678888999999999999999999987765544 78889999999999999999999
Q ss_pred HHHHHHHCCCCCCH
Q 047359 416 NHDEMLKMGHKPDE 429 (440)
Q Consensus 416 ~~~~m~~~~~~p~~ 429 (440)
.+..... ..|..
T Consensus 738 ~ll~a~~--~~p~~ 749 (1018)
T KOG2002|consen 738 ALLKARH--LAPSN 749 (1018)
T ss_pred HHHHHHH--hCCcc
Confidence 8888776 34544
No 24
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.84 E-value=7.8e-16 Score=145.47 Aligned_cols=364 Identities=12% Similarity=0.065 Sum_probs=272.9
Q ss_pred HHHHhccchhHHHHHHHHHHHcCCCCCh--hhHHHHHHHHHhcCChHHHHHHHhccc-CCc-hhHHHH--HHHHHhcCCh
Q 047359 55 DALYRQNEIRLASCLYGAMVRDGVSPNK--FTWSLVAQILCRSGKFEVVLGLLDSGI-YSS-VMYNLV--IDFYSKKGDF 128 (440)
Q Consensus 55 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~-~~~~~l--i~~~~~~~~~ 128 (440)
-...+.|+++.|...|++..+. .|+. ..+ .++..+...|+.++|+..+++.. |+. ..+..+ ...+...|++
T Consensus 42 ii~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 42 IIRARAGDTAPVLDYLQEESKA--GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHHHhCCCHHHHHHHHHHHHhh--CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCH
Confidence 3567899999999999999886 4553 234 88888999999999999999988 433 333334 5688888999
Q ss_pred hHHHHHHHHHhcCCCCCCc-hhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCcccccchHHHHHHHhhcCcHHHHHHH
Q 047359 129 GAAFDRLNEMCNGRNLTPG-FSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMI 207 (440)
Q Consensus 129 ~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 207 (440)
++|+++|+++.+ ..|+ ...+..++..+...++.++|++.++.+.+.. |+ ...+..++..+...++..+|++.
T Consensus 119 d~Aiely~kaL~---~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~--~~~~l~layL~~~~~~~~~AL~~ 191 (822)
T PRK14574 119 DQALALWQSSLK---KDPTNPDLISGMIMTQADAGRGGVVLKQATELAERD--PT--VQNYMTLSYLNRATDRNYDALQA 191 (822)
T ss_pred HHHHHHHHHHHh---hCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cc--hHHHHHHHHHHHhcchHHHHHHH
Confidence 999999999987 4454 4566677888999999999999999998764 55 44555555555556677679999
Q ss_pred HHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHH---------------------------------------------
Q 047359 208 FKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQI--------------------------------------------- 242 (440)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~--------------------------------------------- 242 (440)
++++.+..+. +...+..+..++.+.|-...|.++
T Consensus 192 ~ekll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~a 270 (822)
T PRK14574 192 SSEAVRLAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKA 270 (822)
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHH
Confidence 9999988654 555555555555555444333332
Q ss_pred ---HHHHHHc-CCCCCh-----hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHH
Q 047359 243 ---YHLISER-GITVRD-----SDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELL 313 (440)
Q Consensus 243 ---~~~~~~~-~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 313 (440)
++.+... +..|.. ....-.+-++...+++.++++.++.+...+.+....+-..+..+|...+++++|+.++
T Consensus 271 la~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~ 350 (822)
T PRK14574 271 LADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPIL 350 (822)
T ss_pred HHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 2232221 111221 1112344567788999999999999998876655668889999999999999999999
Q ss_pred HHHHhcCC-----CCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccC-----------CcC--HH-hHHHHHHHHHhcC
Q 047359 314 SAVLDKGL-----LLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKG-----------SLD--VA-TYDVLLDGLFKDG 374 (440)
Q Consensus 314 ~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~p~--~~-~~~~l~~~~~~~g 374 (440)
+.+..... .++......|..+|...+++++|..+++.+.+..+ .|| -. .+..++..+...|
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~g 430 (822)
T PRK14574 351 SSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALN 430 (822)
T ss_pred HHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcC
Confidence 99976431 22333357788999999999999999999987422 122 22 3345677788999
Q ss_pred cHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcccHHHHHHHHHHHHHCCCCCCHHH
Q 047359 375 RMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDEAT 431 (440)
Q Consensus 375 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t 431 (440)
+..+|++.++++....|.|+.....+...+...|.+.+|.+.++.... +.|+...
T Consensus 431 dl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~~~~ 485 (822)
T PRK14574 431 DLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVES--LAPRSLI 485 (822)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCccHH
Confidence 999999999999999999999999999999999999999999987766 4777543
No 25
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.83 E-value=6e-16 Score=128.30 Aligned_cols=405 Identities=14% Similarity=0.142 Sum_probs=241.5
Q ss_pred HhHHHHHHHHHccCCcchHHHHHHHHHhcCCccChHhHHHHHHHHHhccc--hh-HHHHHHHHHHHcC------------
Q 047359 13 DALSLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNE--IR-LASCLYGAMVRDG------------ 77 (440)
Q Consensus 13 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~--~~-~a~~~~~~~~~~~------------ 77 (440)
.+=|.|+. +..+|.+.++.-+++.|...|++.+...--.|++..+-.++ +- .-++.|-.|...|
T Consensus 117 ~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~v 195 (625)
T KOG4422|consen 117 ETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAV 195 (625)
T ss_pred cchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccH
Confidence 34445554 45678899999999999999987777666666554332211 11 1122222222222
Q ss_pred -------CCCChhhHHHHHHHHHhcCChHHHHHHHhccc-----CCchhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCC
Q 047359 78 -------VSPNKFTWSLVAQILCRSGKFEVVLGLLDSGI-----YSSVMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLT 145 (440)
Q Consensus 78 -------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 145 (440)
.+.+..++..+|.++++....+.|.+++++.. .+..+||.+|.+-.-..+ .+++.+|.. ..+.
T Consensus 196 AdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMis-qkm~ 270 (625)
T KOG4422|consen 196 ADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMIS-QKMT 270 (625)
T ss_pred HHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHH-hhcC
Confidence 13345677777777777777777777777655 455667777655443322 567777776 6677
Q ss_pred CchhhHHHHHHHHHhcCChhh----HHHHHHHHHhcCCCCcccccchHHHHHHHhhcCcHHH-HHHHHHHHHhc----CC
Q 047359 146 PGFSTYSSILDGARRYEKTEV----SDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYA-AEMIFKRACDE----KI 216 (440)
Q Consensus 146 p~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~----~~ 216 (440)
||..|+|+++++..+.|+++. |.+++.+|++.|+.|. ..+|..+|..+++.++..+ +..++..+... ..
T Consensus 271 Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePs--LsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~f 348 (625)
T KOG4422|consen 271 PNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPS--LSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTF 348 (625)
T ss_pred CchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcc--hhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcc
Confidence 777777777777777776654 3456677777777777 7777777777777766644 34444444331 11
Q ss_pred C---C-CHHhHHHHHHHHhhhccHHHHHHHHHHHHHcC----CCCC---hhhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 047359 217 E---L-QDDTCGCMLKALSKEGRVKEAIQIYHLISERG----ITVR---DSDYYAFVNVLCKEHQPEEVCGLLRDVVERG 285 (440)
Q Consensus 217 ~---~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 285 (440)
. | |...|...+..|....+.+.|.++..-+.... +.|+ ..-|..+....++....+.....++.|.-.-
T Consensus 349 kp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~ 428 (625)
T KOG4422|consen 349 KPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSA 428 (625)
T ss_pred cCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccce
Confidence 1 1 33345556666667777777776665544321 1121 2345556666677777777777777777666
Q ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCC-cH--------HH-----HHHHHHHH
Q 047359 286 YIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNR-QI--------DK-----AIALHIKI 351 (440)
Q Consensus 286 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~--------~~-----a~~~~~~~ 351 (440)
+-|+..+...++++..-.+.++-.-+++..+...|-..+......++..+++.. .. .. |..+++..
T Consensus 429 y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~ 508 (625)
T KOG4422|consen 429 YFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAY 508 (625)
T ss_pred ecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 667777777777777777777777777777777665545555555555555443 11 11 11111111
Q ss_pred H-----hccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCC-----chhhHHHHHHHHHhcccHHHHHHHHHHHH
Q 047359 352 E-----KLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVV-----SSSSFVIVVSRLCHLKELRKAMKNHDEML 421 (440)
Q Consensus 352 ~-----~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 421 (440)
. ....+......+...-.+.+.|+.++|.++|.-..+.+-. ...+...++..-.+.++...|..+++-|.
T Consensus 509 e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~ 588 (625)
T KOG4422|consen 509 ESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLAS 588 (625)
T ss_pred HhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 1 0112233445555666667777777777777777544322 11233455556666777777777777776
Q ss_pred HCCC
Q 047359 422 KMGH 425 (440)
Q Consensus 422 ~~~~ 425 (440)
..+.
T Consensus 589 ~~n~ 592 (625)
T KOG4422|consen 589 AFNL 592 (625)
T ss_pred HcCc
Confidence 6543
No 26
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.83 E-value=7.6e-16 Score=127.71 Aligned_cols=369 Identities=11% Similarity=0.064 Sum_probs=219.8
Q ss_pred ChHhHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHH-HHhcccCCchhHHHHHHHHHh
Q 047359 46 AVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSGKFEVVLG-LLDSGIYSSVMYNLVIDFYSK 124 (440)
Q Consensus 46 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~-~~~~~~~~~~~~~~li~~~~~ 124 (440)
+..++..+|.++++--..+.|.+++++......+.+..+||.+|.+-.-.-+-+..-+ +-.+|.||..|+|+++++..+
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~K~Lv~EMisqkm~Pnl~TfNalL~c~ak 285 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVGKKLVAEMISQKMTPNLFTFNALLSCAAK 285 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhccHHHHHHHHHhhcCCchHhHHHHHHHHHH
Confidence 3445555555555555555555555555444444555555555544333222111111 111222555555555555555
Q ss_pred cCChh----HHHHHHHHHhcCCCCCCchhhHHHHHHHHHhcCChhh-HHHHHHHHHh----cCCC---CcccccchHHHH
Q 047359 125 KGDFG----AAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEV-SDRIVGLMVE----KKLL---PKHFLSGNDYVI 192 (440)
Q Consensus 125 ~~~~~----~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~----~~~~---~~~~~~~~~~l~ 192 (440)
.|+++ .|.+++.+|++ .|+.|+..+|..++..+.+.++..+ +..++.++.. ..+. |++ ...|...+
T Consensus 286 fg~F~~ar~aalqil~EmKe-iGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d-~~FF~~AM 363 (625)
T KOG4422|consen 286 FGKFEDARKAALQILGEMKE-IGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTD-NKFFQSAM 363 (625)
T ss_pred hcchHHHHHHHHHHHHHHHH-hCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCch-hHHHHHHH
Confidence 55443 34677778887 8888888888888887777766633 4444444433 2222 332 34455667
Q ss_pred HHHhhcCcHHHHHHHHHHHHhcC----CCCC---HHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 047359 193 QKLSDMGKTYAAEMIFKRACDEK----IELQ---DDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVL 265 (440)
Q Consensus 193 ~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 265 (440)
..|.+..+.+.|.++..-..... +.|+ ..-|..+....++....+.-+..|+.|.-.-+.|+..+...++++.
T Consensus 364 ~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~ 443 (625)
T KOG4422|consen 364 SICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRAL 443 (625)
T ss_pred HHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHH
Confidence 77778888887777665554321 2222 1235556667777788888888888888877777888888888888
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCC-CH--------H-----HHHHH-------HHHHHhcCCCCc
Q 047359 266 CKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKG-KW--------K-----EVEEL-------LSAVLDKGLLLD 324 (440)
Q Consensus 266 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~--------~-----~a~~~-------~~~~~~~~~~~~ 324 (440)
...+.++-.-+++.+++..|..-+......++..+++.+ +. . -|..+ -.++... ...
T Consensus 444 ~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~--~~~ 521 (625)
T KOG4422|consen 444 DVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQ--DWP 521 (625)
T ss_pred hhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc--cCC
Confidence 888888888888888877665444444444444444432 11 0 01111 1222222 334
Q ss_pred hhhhHHHHHHHHcCCcHHHHHHHHHHHHhccC----CcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCC-chhhHHH
Q 047359 325 SFCCSSLMEYYCSNRQIDKAIALHIKIEKLKG----SLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVV-SSSSFVI 399 (440)
Q Consensus 325 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~ 399 (440)
....+.+.-.+.+.|..++|.+++..+.+.+- .|......-+++.-.+..+...|...++-|...+.+ -...-+.
T Consensus 522 ~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~~~E~La~R 601 (625)
T KOG4422|consen 522 ATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLPICEGLAQR 601 (625)
T ss_pred hhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCchhhhHHHHH
Confidence 55677788889999999999999999976543 233334445666677888899999999998877665 2224444
Q ss_pred HHHHHHhcccHHHHHHHHH
Q 047359 400 VVSRLCHLKELRKAMKNHD 418 (440)
Q Consensus 400 l~~~~~~~g~~~~a~~~~~ 418 (440)
+...|.-+....+|++-+.
T Consensus 602 I~e~f~iNqeq~~~ls~l~ 620 (625)
T KOG4422|consen 602 IMEDFAINQEQKEALSNLT 620 (625)
T ss_pred HHHhcCcCHHHHHHHhhhh
Confidence 5555554444444544433
No 27
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.83 E-value=2.9e-16 Score=142.76 Aligned_cols=403 Identities=14% Similarity=0.141 Sum_probs=278.3
Q ss_pred CcchHHHHHHHHHhcCCccChHhHHHHHHHHHhccchhHHHHHHHHHHHcCCC--CChhhHHHHHHHHHhcCChHHHHHH
Q 047359 27 LFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVS--PNKFTWSLVAQILCRSGKFEVVLGL 104 (440)
Q Consensus 27 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~ 104 (440)
.+..++.++...-..+ +-|+...+.|...+.-.|+++.++.+...+...... .-...|-.+.++|-..|++++|...
T Consensus 251 s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~y 329 (1018)
T KOG2002|consen 251 SYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKY 329 (1018)
T ss_pred HHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 4556777777776654 457888999999999999999999999999775321 1234578899999999999999999
Q ss_pred Hhccc---CCc--hhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCch-hhHHHHHHHHHhcC----ChhhHHHHHHHH
Q 047359 105 LDSGI---YSS--VMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGF-STYSSILDGARRYE----KTEVSDRIVGLM 174 (440)
Q Consensus 105 ~~~~~---~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~----~~~~a~~~~~~~ 174 (440)
|-+.. ++. ..+-.+...+.+.|+++.+...|+.+.+ ..||. .+...|...|...+ ..+.|..++...
T Consensus 330 Y~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k---~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~ 406 (1018)
T KOG2002|consen 330 YMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLK---QLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKV 406 (1018)
T ss_pred HHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHH---hCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHH
Confidence 98876 443 3466788999999999999999999976 55654 46666666666664 457777777777
Q ss_pred HhcCCCCcccccchHHHHHHHhhcCcHHHHHHHHHHHH----hcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHc-
Q 047359 175 VEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRAC----DEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISER- 249 (440)
Q Consensus 175 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 249 (440)
.+.. |.+ ...|..+...+-...-+ .++.+|..+. ..+-.+.+...|.+...+...|+++.|...|......
T Consensus 407 ~~~~--~~d-~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~ 482 (1018)
T KOG2002|consen 407 LEQT--PVD-SEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKL 482 (1018)
T ss_pred Hhcc--ccc-HHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhh
Confidence 7654 332 67777777666655443 4466666543 3455578889999999999999999999999988665
Q ss_pred --CCCCCh------hhHHHHHHHHHhcCChHHHHHHHHHHHHcC---------------------------------CCC
Q 047359 250 --GITVRD------SDYYAFVNVLCKEHQPEEVCGLLRDVVERG---------------------------------YIP 288 (440)
Q Consensus 250 --~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------------------------------~~~ 288 (440)
...++. .+--.+...+-..++++.|.+.+..+.+.. ...
T Consensus 483 ~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~ 562 (1018)
T KOG2002|consen 483 LEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSS 562 (1018)
T ss_pred hhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccC
Confidence 122222 122223444445556666666666665532 011
Q ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcC-CCCchhhhHHHHHHHH------------cCCcHHHHHHHHHHHHhcc
Q 047359 289 CAMELSRFVASQCGKGKWKEVEELLSAVLDKG-LLLDSFCCSSLMEYYC------------SNRQIDKAIALHIKIEKLK 355 (440)
Q Consensus 289 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~------------~~~~~~~a~~~~~~~~~~~ 355 (440)
+...++.+...+.+...+..|.+-|..+.+.- ..+|..+.-.|...|. ..+..++|+++|.++++..
T Consensus 563 np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d 642 (1018)
T KOG2002|consen 563 NPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND 642 (1018)
T ss_pred CcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC
Confidence 22222223333444444444444333333221 1134444444444433 2345678999999998876
Q ss_pred CCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcccHHHHHHHHHHHHHCCC-CCCHHHHHH
Q 047359 356 GSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLKELRKAMKNHDEMLKMGH-KPDEATYKQ 434 (440)
Q Consensus 356 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~t~~~ 434 (440)
++ |...-+-+.-.++..|++.+|..+|.++++.......+|..+..+|..+|++..|+++|+...+.-. .-+......
T Consensus 643 pk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~ 721 (1018)
T KOG2002|consen 643 PK-NMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHY 721 (1018)
T ss_pred cc-hhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHH
Confidence 65 7888888999999999999999999999998777788999999999999999999999998876433 334445554
Q ss_pred Hhhh
Q 047359 435 VISG 438 (440)
Q Consensus 435 ll~a 438 (440)
|-++
T Consensus 722 Lara 725 (1018)
T KOG2002|consen 722 LARA 725 (1018)
T ss_pred HHHH
Confidence 4443
No 28
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.82 E-value=3.9e-15 Score=143.70 Aligned_cols=389 Identities=11% Similarity=-0.008 Sum_probs=271.9
Q ss_pred HHHHHccCCcchHHHHHHHHHhcCCccChHhHHHHHHHH--HhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 047359 19 LDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDAL--YRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSG 96 (440)
Q Consensus 19 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 96 (440)
+..+.++++++.+.++.. ..|.... ..++.. ...+...++...++.|.+.. +-+......+.-...+.|
T Consensus 320 ~~~~~~~~~~~~~~~~~~------~~~~~~~--~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~ 390 (987)
T PRK09782 320 LPVLLKEGQYDAAQKLLA------TLPANEM--LEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNG 390 (987)
T ss_pred HHHHHhccHHHHHHHHhc------CCCcchH--HHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 566666777765554422 1222222 122222 22345555555555565431 224444444445556667
Q ss_pred ChHHHHHHHhcccC-------CchhHHHHHHHHHhcCC---hhHH----------------------HHHHHHHhcCCCC
Q 047359 97 KFEVVLGLLDSGIY-------SSVMYNLVIDFYSKKGD---FGAA----------------------FDRLNEMCNGRNL 144 (440)
Q Consensus 97 ~~~~a~~~~~~~~~-------~~~~~~~li~~~~~~~~---~~~a----------------------~~~~~~~~~~~~~ 144 (440)
+.++|.++|+...+ +....+-++..|.+.+. ..++ ...+.......+.
T Consensus 391 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 470 (987)
T PRK09782 391 QSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGD 470 (987)
T ss_pred cHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhccc
Confidence 77777777766551 11223355555555544 2222 2222222221223
Q ss_pred CC---chhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCcccccchHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHH
Q 047359 145 TP---GFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDD 221 (440)
Q Consensus 145 ~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 221 (440)
.| +...|..+..++.. ++.++|...+.+..... |+ ......+...+...|++++|...++++... .|+..
T Consensus 471 ~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd--~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~ 543 (987)
T PRK09782 471 MSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PD--AWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNE 543 (987)
T ss_pred CCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--Cc--hHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcH
Confidence 23 45567777777766 88889999888887654 55 333444556667899999999999998665 33444
Q ss_pred hHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 047359 222 TCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQC 301 (440)
Q Consensus 222 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 301 (440)
.+..+..++.+.|++++|...+++..+.++. +...+..+.......|++++|...++...+.. |+...+..+...+.
T Consensus 544 a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~ 620 (987)
T PRK09782 544 DLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYR 620 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHH
Confidence 5667778889999999999999999887532 33333344445556699999999999999864 67888999999999
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHH
Q 047359 302 GKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVR 381 (440)
Q Consensus 302 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 381 (440)
+.|++++|+..+++.....+. +...++.+..++...|+.++|+..+++..+..+. +...+..+..++...|++++|+.
T Consensus 621 ~lG~~deA~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~-~~~a~~nLA~al~~lGd~~eA~~ 698 (987)
T PRK09782 621 QRHNVPAAVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQSREMLERAHKGLPD-DPALIRQLAYVNQRLDDMAATQH 698 (987)
T ss_pred HCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHH
Confidence 999999999999999988655 6778888888999999999999999999987554 67889999999999999999999
Q ss_pred HHHHHHHcCCCchhhHHHHHHHHHhcccHHHHHHHHHHHHHCCCCCCHH
Q 047359 382 IFDYMKELKVVSSSSFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDEA 430 (440)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 430 (440)
.++++.+..|.+..+.........+..+++.|.+-+.+... +.|+..
T Consensus 699 ~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~--~~~~~~ 745 (987)
T PRK09782 699 YARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWT--FSFDSS 745 (987)
T ss_pred HHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhh--cCccch
Confidence 99999999988888888888888889999999998888766 445443
No 29
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.78 E-value=6.9e-14 Score=117.74 Aligned_cols=400 Identities=9% Similarity=0.013 Sum_probs=250.2
Q ss_pred HhHHHHHHHHHccCCcchHHHHHHHHHhcCCccChHhHHHHHHHHHhccchhHHHHHHHHHHHcCCCCCh-hhHHHHHHH
Q 047359 13 DALSLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNK-FTWSLVAQI 91 (440)
Q Consensus 13 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~ 91 (440)
..|-...+-=..++++..|..+|+....-. ..+...|-..+..=.+++++..|..+++..+.. -|-+ ..|-..+.+
T Consensus 74 ~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ym 150 (677)
T KOG1915|consen 74 QVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYM 150 (677)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHH
Confidence 344444444444566667777777777544 235555666666666666777777777776653 2222 234444444
Q ss_pred HHhcCChHHHHHHHhccc---CCchhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCchhhHHHHHHHHHhcCChhhHH
Q 047359 92 LCRSGKFEVVLGLLDSGI---YSSVMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSD 168 (440)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 168 (440)
--..|++..|.++|++-. |+..+|++.|+.=.+-..++.|..+|++..- +.|+..+|....+.-.+.|+...+.
T Consensus 151 EE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~---~HP~v~~wikyarFE~k~g~~~~aR 227 (677)
T KOG1915|consen 151 EEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL---VHPKVSNWIKYARFEEKHGNVALAR 227 (677)
T ss_pred HHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe---ecccHHHHHHHHHHHHhcCcHHHHH
Confidence 445667777777776644 7777777777777777777777777777654 5567766666666666666666666
Q ss_pred HHHHHHHhcCCCCcccccchHHHHHHHhhcCcHHHHHHHHHHHHh-----------------------------------
Q 047359 169 RIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACD----------------------------------- 213 (440)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----------------------------------- 213 (440)
.+++..++.--........+.+....-.++..++.|.-+|+-..+
T Consensus 228 ~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KR 307 (677)
T KOG1915|consen 228 SVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKR 307 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhh
Confidence 666655542100000012222222222333334444443333332
Q ss_pred ---------cCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCCh-hhHHHHH--------HHHHhcCChHHHH
Q 047359 214 ---------EKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRD-SDYYAFV--------NVLCKEHQPEEVC 275 (440)
Q Consensus 214 ---------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~--------~~~~~~~~~~~a~ 275 (440)
.++ .|-.+|-..+..-...|+.+...++|+.....-++.+. ..|...| -.-....+.+.+.
T Consensus 308 k~qYE~~v~~np-~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr 386 (677)
T KOG1915|consen 308 KFQYEKEVSKNP-YNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTR 386 (677)
T ss_pred hhHHHHHHHhCC-CCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 222 24555666666666677777777777777764322111 1111111 1113456777777
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHH----HcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHH
Q 047359 276 GLLRDVVERGYIPCAMELSRFVASQ----CGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKI 351 (440)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 351 (440)
++++..++. ++....||..+--.| .++.++..|.+++..... ..|...+|...|..-.+.++++.+..++++.
T Consensus 387 ~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkf 463 (677)
T KOG1915|consen 387 QVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKF 463 (677)
T ss_pred HHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 888777763 344445555443333 356778888888877654 4677888888888888889999999999999
Q ss_pred HhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCC--chhhHHHHHHHHHhcccHHHHHHHHHHHHHC
Q 047359 352 EKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVV--SSSSFVIVVSRLCHLKELRKAMKNHDEMLKM 423 (440)
Q Consensus 352 ~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 423 (440)
++-++. +..+|......-...|+.+.|..+|.-+.+.... +...|...|..-...|.+++|..+++++++.
T Consensus 464 le~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 464 LEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 987665 7788888888888889999999999988876544 5567788888888899999999999998873
No 30
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.77 E-value=4.8e-15 Score=124.09 Aligned_cols=387 Identities=11% Similarity=0.088 Sum_probs=217.9
Q ss_pred HhHHHHHHHHHccCCcchHHHHHHHHHhcCCccChHhHH-HHHHHHHhccchhHHHHHHHHHHHcCCCCChh----hHHH
Q 047359 13 DALSLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACN-ALLDALYRQNEIRLASCLYGAMVRDGVSPNKF----TWSL 87 (440)
Q Consensus 13 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~ 87 (440)
.+...|.+.|.-.....+|+..++-+.+...-|+..... .+...+.+.+.+.+|+++|+..+..-...+.. ..+.
T Consensus 202 svl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~n 281 (840)
T KOG2003|consen 202 SVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNN 281 (840)
T ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhh
Confidence 344445666666677778888888777665556654332 23355667777788888877776542111222 2333
Q ss_pred HHHHHHhcCChHHHHHHHhccc---CCchhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCC------------chhhHH
Q 047359 88 VAQILCRSGKFEVVLGLLDSGI---YSSVMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTP------------GFSTYS 152 (440)
Q Consensus 88 l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p------------~~~~~~ 152 (440)
+.-.+.+.|.++.|+.-|+... |+..+--.|+-++...|+-++..+.|.+|.. ....| +....+
T Consensus 282 igvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~-ip~~~dddkyi~~~ddp~~~ll~ 360 (840)
T KOG2003|consen 282 IGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLID-IPGEIDDDKYIKEKDDPDDNLLN 360 (840)
T ss_pred cCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhc-CCCCCCcccccCCcCCcchHHHH
Confidence 3344667778888888877765 6666655555566667777777777777755 11111 111111
Q ss_pred HHH---------------------------------------------------------------HHHHhcCChhhHHH
Q 047359 153 SIL---------------------------------------------------------------DGARRYEKTEVSDR 169 (440)
Q Consensus 153 ~l~---------------------------------------------------------------~~~~~~~~~~~a~~ 169 (440)
.-+ ..+.+.|+++.|.+
T Consensus 361 eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aie 440 (840)
T KOG2003|consen 361 EAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIE 440 (840)
T ss_pred HHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHH
Confidence 110 11234455555555
Q ss_pred HHHHHHhcCCCCcccccchHHH--HH----------------------------------HHhhcCcHHHHHHHHHHHHh
Q 047359 170 IVGLMVEKKLLPKHFLSGNDYV--IQ----------------------------------KLSDMGKTYAAEMIFKRACD 213 (440)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~l--~~----------------------------------~~~~~~~~~~a~~~~~~~~~ 213 (440)
++.-+.+.+-... ...-+.| +. .....|++++|.+.+++...
T Consensus 441 ilkv~~~kdnk~~--saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ 518 (840)
T KOG2003|consen 441 ILKVFEKKDNKTA--SAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALN 518 (840)
T ss_pred HHHHHHhccchhh--HHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHc
Confidence 5544443321111 0000000 00 01112455555555555554
Q ss_pred cCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhH
Q 047359 214 EKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMEL 293 (440)
Q Consensus 214 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 293 (440)
....-....|| +.-.+-..|++++|++.|-.+...- .-+..+...+.+.|....++.+|++++...... ++.|+...
T Consensus 519 ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il-~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~il 595 (840)
T KOG2003|consen 519 NDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAIL 595 (840)
T ss_pred CchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHH
Confidence 32221122222 1223344555566655555443221 113445555556666666666666666555443 34556667
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHH-Hh
Q 047359 294 SRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGL-FK 372 (440)
Q Consensus 294 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~-~~ 372 (440)
+.|...|-+.|+-.+|.+.+-+-.+. ++-+..+..-|...|....-+++++..|++..- +.|+..-|..++..| .+
T Consensus 596 skl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rr 672 (840)
T KOG2003|consen 596 SKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRR 672 (840)
T ss_pred HHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHh
Confidence 77777777777777776665444333 233566666666667777777777777776654 567888888776654 46
Q ss_pred cCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcc
Q 047359 373 DGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLK 408 (440)
Q Consensus 373 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 408 (440)
.|+++.|..+++.+.++.|.+..+...|++.+...|
T Consensus 673 sgnyqka~d~yk~~hrkfpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 673 SGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred cccHHHHHHHHHHHHHhCccchHHHHHHHHHhcccc
Confidence 788888888888888877778888888877776665
No 31
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.76 E-value=1.3e-17 Score=141.66 Aligned_cols=263 Identities=13% Similarity=0.053 Sum_probs=114.4
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhcCCCCcccccchHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhh
Q 047359 153 SILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSK 232 (440)
Q Consensus 153 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 232 (440)
.+...+.+.|++++|.+++.........|++ ...|..+.......++.+.|.+.++++...+.. ++..+..++.. ..
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~-~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~ 89 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDD-PEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQ 89 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccc-ccccccccccc-cc
Confidence 4566777888888888888655444322332 556666677777788888888888888876554 55567667766 68
Q ss_pred hccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCChhhHHHHHHHHHcCCCHHHHHH
Q 047359 233 EGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERG-YIPCAMELSRFVASQCGKGKWKEVEE 311 (440)
Q Consensus 233 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~ 311 (440)
.+++++|.++++...+.. ++...+..++..+...++++++..+++.+.... .+.+...|..+...+.+.|+.++|++
T Consensus 90 ~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~ 167 (280)
T PF13429_consen 90 DGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR 167 (280)
T ss_dssp ------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred cccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 899999999888776543 455667788888889999999999999877532 34566778888888999999999999
Q ss_pred HHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCC
Q 047359 312 LLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKV 391 (440)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 391 (440)
.+++..+..+. |......++..+...|+.+++.++++...+.. ..|+..+..+..+|...|+.++|...|++..+..|
T Consensus 168 ~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p 245 (280)
T PF13429_consen 168 DYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP 245 (280)
T ss_dssp HHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccccc
Confidence 99999987554 67788889999999999999999988887764 44667788999999999999999999999999988
Q ss_pred CchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Q 047359 392 VSSSSFVIVVSRLCHLKELRKAMKNHDEMLK 422 (440)
Q Consensus 392 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 422 (440)
.|+.....+..++...|+.++|.++.++..+
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp T-HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 8999999999999999999999999887654
No 32
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.75 E-value=6.7e-13 Score=116.26 Aligned_cols=400 Identities=10% Similarity=-0.015 Sum_probs=200.5
Q ss_pred CCCCChHhHHHHHHHHHccCCcchHHHHHHHH----HhcCCccChHhHHHHHHHHHhccchhHHHHHHHHHHHcCCCCC-
Q 047359 7 GRDSQSDALSLVLDCYSHKGLFMDGLEVYRMM----RVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPN- 81 (440)
Q Consensus 7 g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~----~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~- 81 (440)
.++.+...|-+-...=-.+|+.+...++..+- ...|+..+...|-.=...|-+.|..-.+..+....+.-|+.-.
T Consensus 435 ~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed 514 (913)
T KOG0495|consen 435 IIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEED 514 (913)
T ss_pred hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccch
Confidence 34445555555554445555555555544432 2334444444444444444444444444444444444333221
Q ss_pred -hhhHHHHHHHHHhcCChHHHHHHHhccc----CCchhHHH----------------------------------HHHHH
Q 047359 82 -KFTWSLVAQILCRSGKFEVVLGLLDSGI----YSSVMYNL----------------------------------VIDFY 122 (440)
Q Consensus 82 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~----------------------------------li~~~ 122 (440)
..||..-.+.|.+.+.++-|..+|.... .+...|.. ....+
T Consensus 515 ~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~ 594 (913)
T KOG0495|consen 515 RKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEK 594 (913)
T ss_pred hHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHH
Confidence 2344444444444444444444444433 22233433 34444
Q ss_pred HhcCChhHHHHHHHHHhcCCCCCC-chhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCcccccchHHHHHHHhhcCcH
Q 047359 123 SKKGDFGAAFDRLNEMCNGRNLTP-GFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKT 201 (440)
Q Consensus 123 ~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 201 (440)
-..|+...|..++....+ ..| +...|..-+........++.|..+|.+....+ |+ ...|..-++...-.++.
T Consensus 595 w~agdv~~ar~il~~af~---~~pnseeiwlaavKle~en~e~eraR~llakar~~s--gT--eRv~mKs~~~er~ld~~ 667 (913)
T KOG0495|consen 595 WKAGDVPAARVILDQAFE---ANPNSEEIWLAAVKLEFENDELERARDLLAKARSIS--GT--ERVWMKSANLERYLDNV 667 (913)
T ss_pred HhcCCcHHHHHHHHHHHH---hCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccC--Cc--chhhHHHhHHHHHhhhH
Confidence 444555555555544443 112 22344444444444445555555554444322 33 33444444444444455
Q ss_pred HHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 047359 202 YAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDV 281 (440)
Q Consensus 202 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 281 (440)
++|.+++++..+.-+. -...|..+.+.+-+.++.+.|...|..-.+. ++.....|..+...--+.|.+-.|..+++..
T Consensus 668 eeA~rllEe~lk~fp~-f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildra 745 (913)
T KOG0495|consen 668 EEALRLLEEALKSFPD-FHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRA 745 (913)
T ss_pred HHHHHHHHHHHHhCCc-hHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 5555555444443211 1223444444444444444444444433332 1112233444444444444555555555554
Q ss_pred HHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHH
Q 047359 282 VERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVA 361 (440)
Q Consensus 282 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 361 (440)
.-.+ +-+...|-..|+.-.+.|+.+.|..++.+.++.- +.+...|..-|....+.++-......+++ ..-|++
T Consensus 746 rlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQec-p~sg~LWaEaI~le~~~~rkTks~DALkk-----ce~dph 818 (913)
T KOG0495|consen 746 RLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQEC-PSSGLLWAEAIWLEPRPQRKTKSIDALKK-----CEHDPH 818 (913)
T ss_pred HhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccchhHHHHHHhccCcccchHHHHHHHh-----ccCCch
Confidence 4433 2344444455555555555555555554444431 12333444444444443332222222221 233666
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Q 047359 362 TYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLKELRKAMKNHDEMLK 422 (440)
Q Consensus 362 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 422 (440)
..-.+...+....+++.|.+.|.+....++....+|..+...+.+.|.-+.-.++++....
T Consensus 819 Vllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~ 879 (913)
T KOG0495|consen 819 VLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCET 879 (913)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 6677777888888999999999999999999888999999999999988888888888876
No 33
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.74 E-value=1.5e-13 Score=124.64 Aligned_cols=361 Identities=14% Similarity=0.085 Sum_probs=265.1
Q ss_pred HhHHHHHHHHHccCCcchHHHHHHHHHhcCCccChHhHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 047359 13 DALSLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQIL 92 (440)
Q Consensus 13 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 92 (440)
...-.....+.-.|++++|.+++.++.+.. +.+...|..|...|-..|+.+++...+-.+.... +.|...|..+....
T Consensus 140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls 217 (895)
T KOG2076|consen 140 RQLLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLS 217 (895)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 333334444445599999999999999876 5678899999999999999999998877665543 34778899999999
Q ss_pred HhcCChHHHHHHHhccc----CCchhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCC--chhhH----HHHHHHHHhcC
Q 047359 93 CRSGKFEVVLGLLDSGI----YSSVMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTP--GFSTY----SSILDGARRYE 162 (440)
Q Consensus 93 ~~~~~~~~a~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p--~~~~~----~~l~~~~~~~~ 162 (440)
...|.++.|.-+|.+.. ++...+---+..|-+.|+...|.+-|.++.+ ..| |..-. ...+..+...+
T Consensus 218 ~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~---~~p~~d~er~~d~i~~~~~~~~~~~ 294 (895)
T KOG2076|consen 218 EQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQ---LDPPVDIERIEDLIRRVAHYFITHN 294 (895)
T ss_pred HhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHh---hCCchhHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999977 3434445567788999999999999999977 334 22222 23455566677
Q ss_pred ChhhHHHHHHHHHhcCCCCcccccchHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCC-----------------------
Q 047359 163 KTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQ----------------------- 219 (440)
Q Consensus 163 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----------------------- 219 (440)
+-+.|.+.++.....+..-.. ...++.++..+.+...++.+.............+|
T Consensus 295 ~~e~a~~~le~~~s~~~~~~~-~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~ 373 (895)
T KOG2076|consen 295 ERERAAKALEGALSKEKDEAS-LEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKE 373 (895)
T ss_pred HHHHHHHHHHHHHhhcccccc-ccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCC
Confidence 779999999888874322211 56788899999999999999988888776222222
Q ss_pred ----HHhHHHHHHHHhhhccHHHHHHHHHHHHHcC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhH
Q 047359 220 ----DDTCGCMLKALSKEGRVKEAIQIYHLISERG--ITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMEL 293 (440)
Q Consensus 220 ----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 293 (440)
..++. +.-++...+..+....+.....+.. +.-+...|.-+..++...|++.+|+.++..+......-+...|
T Consensus 374 ~s~~l~v~r-l~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw 452 (895)
T KOG2076|consen 374 LSYDLRVIR-LMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVW 452 (895)
T ss_pred CCccchhHh-HhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhh
Confidence 22211 2223334444444555555555555 3335677888999999999999999999999887555567789
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHh--------ccCCcCHHhHHH
Q 047359 294 SRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEK--------LKGSLDVATYDV 365 (440)
Q Consensus 294 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~~~p~~~~~~~ 365 (440)
-.+..+|...|..++|.+.|+.+....+. +...-..|...+.+.|+.++|.+.+..+.. .+..|+......
T Consensus 453 ~~~a~c~~~l~e~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~ 531 (895)
T KOG2076|consen 453 YKLARCYMELGEYEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAH 531 (895)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHH
Confidence 99999999999999999999999987543 555666777889999999999999988652 223445555555
Q ss_pred HHHHHHhcCcHHHHHH
Q 047359 366 LLDGLFKDGRMEEAVR 381 (440)
Q Consensus 366 l~~~~~~~g~~~~a~~ 381 (440)
....+.+.|+.++-+.
T Consensus 532 r~d~l~~~gk~E~fi~ 547 (895)
T KOG2076|consen 532 RCDILFQVGKREEFIN 547 (895)
T ss_pred HHHHHHHhhhHHHHHH
Confidence 5666777777665443
No 34
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=6.7e-13 Score=111.60 Aligned_cols=377 Identities=11% Similarity=0.023 Sum_probs=239.5
Q ss_pred cChHhHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhcccCCchhH--HHHHHHH
Q 047359 45 PAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSGKFEVVLGLLDSGIYSSVMY--NLVIDFY 122 (440)
Q Consensus 45 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~li~~~ 122 (440)
.|...+-.....+-+.|....|.+.|...+.. .+-.-..|..|... .-+.+.+..+......+.... -.+..++
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~l---it~~e~~~~l~~~l~~~~h~M~~~F~~~a~ 237 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSEL---ITDIEILSILVVGLPSDMHWMKKFFLKKAY 237 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHh---hchHHHHHHHHhcCcccchHHHHHHHHHHH
Confidence 34333333334445567777777777766543 12233333333322 223333333332222111111 1233455
Q ss_pred HhcCChhHHHHHHHHHhcCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCcccccchHHHHHHHhhcCcHH
Q 047359 123 SKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTY 202 (440)
Q Consensus 123 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 202 (440)
......+++++-...... .|.+-+...-+....+.....+++.|+.+|+++.+.++-.-.+..+|..++-.-.......
T Consensus 238 ~el~q~~e~~~k~e~l~~-~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs 316 (559)
T KOG1155|consen 238 QELHQHEEALQKKERLSS-VGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLS 316 (559)
T ss_pred HHHHHHHHHHHHHHHHHh-ccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHH
Confidence 566677777777777766 5555444444444445567788889999999888875322122556665553332221111
Q ss_pred -HHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 047359 203 -AAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDV 281 (440)
Q Consensus 203 -~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 281 (440)
-|..++ .+- +-.+.|...+..-|+-.++.++|...|++..+.++. ....|+.+..-|...++...|..-++.+
T Consensus 317 ~LA~~v~-~id----KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrA 390 (559)
T KOG1155|consen 317 YLAQNVS-NID----KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRA 390 (559)
T ss_pred HHHHHHH-Hhc----cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence 122211 111 123456777777888888888898888888887654 5567888888888888888888888888
Q ss_pred HHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHH
Q 047359 282 VERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVA 361 (440)
Q Consensus 282 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 361 (440)
++-+ +.|-..|-.|.++|.-.+...-|+-.|++.....+. |+..|..|..+|.+.++.++|++.|.+....|-. +..
T Consensus 391 vdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~ 467 (559)
T KOG1155|consen 391 VDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGS 467 (559)
T ss_pred HhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chH
Confidence 8764 567788888888888888888888888888877544 7888888888898889999999988888876543 667
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHHc----CCCch---hhHHHHHHHHHhcccHHHHHHHHHHHHHCCCCCCHHHHHH
Q 047359 362 TYDVLLDGLFKDGRMEEAVRIFDYMKEL----KVVSS---SSFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDEATYKQ 434 (440)
Q Consensus 362 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ 434 (440)
.+..|...|-+.++.++|...|++..+. |..++ .+..-|...+.+.+++++|......... | .+...--+.
T Consensus 468 ~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~-~-~~e~eeak~ 545 (559)
T KOG1155|consen 468 ALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK-G-ETECEEAKA 545 (559)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc-C-CchHHHHHH
Confidence 8888888888888888888888876652 22222 2333466667788888888776655544 2 455454455
Q ss_pred Hhh
Q 047359 435 VIS 437 (440)
Q Consensus 435 ll~ 437 (440)
|++
T Consensus 546 LlR 548 (559)
T KOG1155|consen 546 LLR 548 (559)
T ss_pred HHH
Confidence 544
No 35
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.73 E-value=4.6e-14 Score=127.80 Aligned_cols=325 Identities=13% Similarity=0.119 Sum_probs=227.9
Q ss_pred HHHHhcCChHHHHHHHhccc----CCchhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCC-chhhHHHHHHHHHhcCCh
Q 047359 90 QILCRSGKFEVVLGLLDSGI----YSSVMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTP-GFSTYSSILDGARRYEKT 164 (440)
Q Consensus 90 ~~~~~~~~~~~a~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~ 164 (440)
+...-.|+.++|..++.++. .+...|..|..+|-+.|+.+++...+-..-. +.| |...|..+.....+.|++
T Consensus 147 N~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAH---L~p~d~e~W~~ladls~~~~~i 223 (895)
T KOG2076|consen 147 NNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAH---LNPKDYELWKRLADLSEQLGNI 223 (895)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHh---cCCCChHHHHHHHHHHHhcccH
Confidence 33334477777777777766 4555677777777777777777766655533 333 445677777777777778
Q ss_pred hhHHHHHHHHHhcCCCCcccccchHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHh----HHHHHHHHhhhccHHHHH
Q 047359 165 EVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDT----CGCMLKALSKEGRVKEAI 240 (440)
Q Consensus 165 ~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~a~ 240 (440)
+.|.-.|.+.++.. |++ ...+-.-+..|.+.|+...|.+-|.++....+..|..- -..+++.+...++.+.|.
T Consensus 224 ~qA~~cy~rAI~~~--p~n-~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~ 300 (895)
T KOG2076|consen 224 NQARYCYSRAIQAN--PSN-WELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAA 300 (895)
T ss_pred HHHHHHHHHHHhcC--Ccc-hHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 88888887777765 332 33444456677777888888877777777654222222 223455566667777777
Q ss_pred HHHHHHHHc-CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc---------------------------CCCCChhh
Q 047359 241 QIYHLISER-GITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVER---------------------------GYIPCAME 292 (440)
Q Consensus 241 ~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------------------~~~~~~~~ 292 (440)
+.++..... +-..+...++.++..+.+...++.+.......... +..++...
T Consensus 301 ~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v 380 (895)
T KOG2076|consen 301 KALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV 380 (895)
T ss_pred HHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh
Confidence 777776652 22335556777777777777777777776666541 11222223
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcC--CCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHH
Q 047359 293 LSRFVASQCGKGKWKEVEELLSAVLDKG--LLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGL 370 (440)
Q Consensus 293 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 370 (440)
+ .+.-++.+.+..+....+........ +.-+...|..+..+|...|++.+|+.++..+......-+...|-.+..+|
T Consensus 381 ~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~ 459 (895)
T KOG2076|consen 381 I-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCY 459 (895)
T ss_pred H-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHH
Confidence 1 22334445555555555555555554 34456678889999999999999999999999876666788999999999
Q ss_pred HhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcccHHHHHHHHHHHH
Q 047359 371 FKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLKELRKAMKNHDEML 421 (440)
Q Consensus 371 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 421 (440)
...|.+++|.+.++++....|.+..+-..|...+.+.|+.++|.+.+..+.
T Consensus 460 ~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 460 MELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 999999999999999999999888888899999999999999999999865
No 36
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.73 E-value=5.4e-14 Score=124.97 Aligned_cols=285 Identities=10% Similarity=0.060 Sum_probs=203.6
Q ss_pred cCChhHHHHHHHHHhcCCCCCCchh-hHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCcccccchHHHHHHHhhcCcHHH
Q 047359 125 KGDFGAAFDRLNEMCNGRNLTPGFS-TYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYA 203 (440)
Q Consensus 125 ~~~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 203 (440)
.|++++|.+.+....+ . .++.. .|.....+..+.|+++.|...+.++.+.. |+............+...|+++.
T Consensus 97 eGd~~~A~k~l~~~~~-~--~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~--~~~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 97 EGDYQQVEKLMTRNAD-H--AEQPVVNYLLAAEAAQQRGDEARANQHLERAAELA--DNDQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred CCCHHHHHHHHHHHHh-c--ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHCCCHHH
Confidence 5888888877777644 2 12222 33333445578888888888888887644 44102222233667888888888
Q ss_pred HHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCCh-------hhHHHHHHHHHhcCChHHHHH
Q 047359 204 AEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRD-------SDYYAFVNVLCKEHQPEEVCG 276 (440)
Q Consensus 204 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~ 276 (440)
|...++++.+..+. ++.....+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...+
T Consensus 172 Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~ 250 (398)
T PRK10747 172 ARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR 250 (398)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 98888888887765 6777888888888999999999999988887655322 123333444444455666666
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccC
Q 047359 277 LLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKG 356 (440)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 356 (440)
+++.+.+. .+.+......+...+...|+.++|.+++++..+.. |+... .++.+....++.+++.+..+...+..+
T Consensus 251 ~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~--~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P 325 (398)
T PRK10747 251 WWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQ--YDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHG 325 (398)
T ss_pred HHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCHHH--HHHHhhccCCChHHHHHHHHHHHhhCC
Confidence 67666443 24567778888888999999999999998888753 34321 233344456889999999998887655
Q ss_pred CcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Q 047359 357 SLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLKELRKAMKNHDEMLK 422 (440)
Q Consensus 357 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 422 (440)
. |...+..+...|.+.|++++|.+.|+.+.+..|. ...+..+...+.+.|+.++|.+++++...
T Consensus 326 ~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~-~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 326 D-TPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPD-AYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred C-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4 6677888899999999999999999999887655 34466788888999999999999988765
No 37
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.73 E-value=4.4e-17 Score=138.41 Aligned_cols=261 Identities=13% Similarity=0.060 Sum_probs=72.5
Q ss_pred HHHHHHHccCCcchHHHHHHHHHhcC-CccChHhHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 047359 17 LVLDCYSHKGLFMDGLEVYRMMRVYG-FVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRS 95 (440)
Q Consensus 17 ~li~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 95 (440)
.+...+.+.|++++|+++++...... .+.+...|..+.......++++.|.+.++++.+.+.. ++..+..++..
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l---- 87 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL---- 87 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc----
Confidence 34555556666666666664433222 1223333333444444455666666666666554321 33334444443
Q ss_pred CChHHHHHHHhcccCCchhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHH
Q 047359 96 GKFEVVLGLLDSGIYSSVMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMV 175 (440)
Q Consensus 96 ~~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 175 (440)
...+++++|.+++....+ ..++...+..++..+.+.++++++..+++.+.
T Consensus 88 ---------------------------~~~~~~~~A~~~~~~~~~---~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~ 137 (280)
T PF13429_consen 88 ---------------------------LQDGDPEEALKLAEKAYE---RDGDPRYLLSALQLYYRLGDYDEAEELLEKLE 137 (280)
T ss_dssp ------------------------------------------------------------H-HHHTT-HHHHHHHHHHHH
T ss_pred ---------------------------cccccccccccccccccc---cccccchhhHHHHHHHHHhHHHHHHHHHHHHH
Confidence 344555555555444332 12333444445555555555555555555554
Q ss_pred hcCCCCcccccchHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCCh
Q 047359 176 EKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRD 255 (440)
Q Consensus 176 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 255 (440)
...-.++ +...|..+...+.+.|+.++|.+.+++..+..+. |......++..+...|+.+++..+++...+.. +.|.
T Consensus 138 ~~~~~~~-~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~ 214 (280)
T PF13429_consen 138 ELPAAPD-SARFWLALAEIYEQLGDPDKALRDYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDP 214 (280)
T ss_dssp H-T---T--HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSC
T ss_pred hccCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHH
Confidence 3221111 1444555555555566666666666655555433 44555556666666666666555555555443 2244
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHH
Q 047359 256 SDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAV 316 (440)
Q Consensus 256 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 316 (440)
..+..+..++...|++++|..+++...+.. +.|......+..++...|+.++|.++.++.
T Consensus 215 ~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 215 DLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp CHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT---------------
T ss_pred HHHHHHHHHhcccccccccccccccccccc-cccccccccccccccccccccccccccccc
Confidence 455556666666666666666666655542 335555555666666666666666665554
No 38
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.72 E-value=3.9e-12 Score=111.61 Aligned_cols=384 Identities=13% Similarity=0.014 Sum_probs=308.7
Q ss_pred ccCCcchHHHHHHHHHhcCCccChHhHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHH
Q 047359 24 HKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSGKFEVVLG 103 (440)
Q Consensus 24 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 103 (440)
...+.+.|.-++.+..+.- +.+.. |.-++++...++.|.++++...+. ++.+...|.+-...--..|+.+...+
T Consensus 388 elE~~~darilL~rAvecc-p~s~d----LwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~k 461 (913)
T KOG0495|consen 388 ELEEPEDARILLERAVECC-PQSMD----LWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEK 461 (913)
T ss_pred hccChHHHHHHHHHHHHhc-cchHH----HHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHH
Confidence 3456666888888777642 33333 344666777899999999999875 66688889888888888999999999
Q ss_pred HHhccc---------CCchhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCc--hhhHHHHHHHHHhcCChhhHHHHHH
Q 047359 104 LLDSGI---------YSSVMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPG--FSTYSSILDGARRYEKTEVSDRIVG 172 (440)
Q Consensus 104 ~~~~~~---------~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~ 172 (440)
++++.. .+...|-.=...|-..|..-.+..+...... -|+.-. ..||..-...|.+.+.++-|..+|.
T Consensus 462 ii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avig-igvEeed~~~tw~~da~~~~k~~~~~carAVya 540 (913)
T KOG0495|consen 462 IIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIG-IGVEEEDRKSTWLDDAQSCEKRPAIECARAVYA 540 (913)
T ss_pred HHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHh-hccccchhHhHHhhhHHHHHhcchHHHHHHHHH
Confidence 887755 4445566666777778888888888888876 665532 3488888889999999999999999
Q ss_pred HHHhcCCCCcccccchHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCC
Q 047359 173 LMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGIT 252 (440)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 252 (440)
..++.. |.. ...|......--..|..+....+|++....-++ ....|......+-..|+...|..++....+....
T Consensus 541 ~alqvf--p~k-~slWlra~~~ek~hgt~Esl~Allqkav~~~pk-ae~lwlM~ake~w~agdv~~ar~il~~af~~~pn 616 (913)
T KOG0495|consen 541 HALQVF--PCK-KSLWLRAAMFEKSHGTRESLEALLQKAVEQCPK-AEILWLMYAKEKWKAGDVPAARVILDQAFEANPN 616 (913)
T ss_pred HHHhhc--cch-hHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC
Confidence 988754 332 677877777777889999999999999887554 5667888888888899999999999999888665
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHH
Q 047359 253 VRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLM 332 (440)
Q Consensus 253 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 332 (440)
+...|...+.....+..++.|..+|...... .|+...|..-+....-.++.++|.+++++..+.-+. -...|..+.
T Consensus 617 -seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~-f~Kl~lmlG 692 (913)
T KOG0495|consen 617 -SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSFPD-FHKLWLMLG 692 (913)
T ss_pred -cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCc-hHHHHHHHh
Confidence 7788888999999999999999999998774 578888887777777789999999999998876322 345677888
Q ss_pred HHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcccHHH
Q 047359 333 EYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLKELRK 412 (440)
Q Consensus 333 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 412 (440)
+.+-+.++.+.|.+.|..-.+. ++-.+..|-.|...--+.|+.-.|..++++.+-.+|.+...|...++.-.+.|..+.
T Consensus 693 Qi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~ 771 (913)
T KOG0495|consen 693 QIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQ 771 (913)
T ss_pred HHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHH
Confidence 8899999999999988877664 333556788888888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHC
Q 047359 413 AMKNHDEMLKM 423 (440)
Q Consensus 413 a~~~~~~m~~~ 423 (440)
|..++.+.++.
T Consensus 772 a~~lmakALQe 782 (913)
T KOG0495|consen 772 AELLMAKALQE 782 (913)
T ss_pred HHHHHHHHHHh
Confidence 99998887763
No 39
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.72 E-value=7.4e-14 Score=124.83 Aligned_cols=292 Identities=11% Similarity=-0.010 Sum_probs=202.3
Q ss_pred HhcCChhHHHHHHHHHhcCCCCCCchh-hHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCcccccchHHHHHHHhhcCcH
Q 047359 123 SKKGDFGAAFDRLNEMCNGRNLTPGFS-TYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKT 201 (440)
Q Consensus 123 ~~~~~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 201 (440)
...|+++.|.+.+.+..+ ..|+.. .+-....+....|+.+.|.+.+.+..+.. |+............+...|++
T Consensus 95 ~~~g~~~~A~~~l~~~~~---~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~ 169 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNAD---HAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNEL 169 (409)
T ss_pred HhCCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCH
Confidence 457899999998888755 445543 34445567778899999999998887654 441122333457788888999
Q ss_pred HHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHH---HHhcCChHHHHHHH
Q 047359 202 YAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNV---LCKEHQPEEVCGLL 278 (440)
Q Consensus 202 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~ 278 (440)
+.|...++.+.+..+. ++..+..+...+.+.|++++|.+.+..+.+.++.++......-..+ ....+..+++.+.+
T Consensus 170 ~~Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L 248 (409)
T TIGR00540 170 HAARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGL 248 (409)
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 9999999999888765 6678888889999999999999999999988654332221111111 12223333333444
Q ss_pred HHHHHcCC---CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhh-HHHHHHHHcCCcHHHHHHHHHHHHhc
Q 047359 279 RDVVERGY---IPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCC-SSLMEYYCSNRQIDKAIALHIKIEKL 354 (440)
Q Consensus 279 ~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~ 354 (440)
..+.+... +.+...+..+...+...|+.++|.+++++..+..+......+ ..........++.+.+.+.++...+.
T Consensus 249 ~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 249 LNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred HHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 44444321 236778888888999999999999999999887543221111 11222233457788888888888775
Q ss_pred cCCcCH--HhHHHHHHHHHhcCcHHHHHHHHHH--HHHcCCCchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Q 047359 355 KGSLDV--ATYDVLLDGLFKDGRMEEAVRIFDY--MKELKVVSSSSFVIVVSRLCHLKELRKAMKNHDEMLK 422 (440)
Q Consensus 355 ~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 422 (440)
.+. |+ ....++...+.+.|++++|.+.|+. ..+..| ++..+..+...+.+.|+.++|.+++++...
T Consensus 329 ~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p-~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 329 VDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQL-DANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 433 44 5677889999999999999999995 444443 444567899999999999999999988654
No 40
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.71 E-value=8e-14 Score=123.90 Aligned_cols=280 Identities=13% Similarity=0.058 Sum_probs=209.6
Q ss_pred cCChHHHHHHHhccc---CCchhH-HHHHHHHHhcCChhHHHHHHHHHhcCCCCCCchhhHH--HHHHHHHhcCChhhHH
Q 047359 95 SGKFEVVLGLLDSGI---YSSVMY-NLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFSTYS--SILDGARRYEKTEVSD 168 (440)
Q Consensus 95 ~~~~~~a~~~~~~~~---~~~~~~-~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~--~l~~~~~~~~~~~~a~ 168 (440)
.|+++.|.+.+.... +++..+ ........+.|+++.|.+.+.++.+ ..|+..... .....+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~---~~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAE---LADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 588888888877665 223333 3334445788999999999999866 556654333 3356778889999999
Q ss_pred HHHHHHHhcCCCCcccccchHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHH-------hHHHHHHHHhhhccHHHHHH
Q 047359 169 RIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDD-------TCGCMLKALSKEGRVKEAIQ 241 (440)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~ 241 (440)
..++.+.+.. |++ ......+...|.+.|++++|.+++..+.+.+..++.. .|..++.......+.+...+
T Consensus 174 ~~l~~~~~~~--P~~-~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~ 250 (398)
T PRK10747 174 HGVDKLLEVA--PRH-PEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR 250 (398)
T ss_pred HHHHHHHhcC--CCC-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 9999988765 554 6778888899999999999999999998876653221 22333333334445566666
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCC
Q 047359 242 IYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGL 321 (440)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 321 (440)
+++.+.+. .+.+......+...+...|+.++|.+++++..+. +|+.... ++.+....++.+++.+..+...+..+
T Consensus 251 ~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P 325 (398)
T PRK10747 251 WWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHG 325 (398)
T ss_pred HHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCC
Confidence 66666443 2346778888999999999999999999998874 4444322 33344456999999999999988765
Q ss_pred CCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 047359 322 LLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKE 388 (440)
Q Consensus 322 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 388 (440)
. |...+..+...|.+.+++++|.+.|+...+. .|+...+..+...+.+.|+.++|.+.+++...
T Consensus 326 ~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 326 D-TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred C-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4 6677888999999999999999999999984 68888888999999999999999999987754
No 41
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=3e-13 Score=114.41 Aligned_cols=388 Identities=11% Similarity=-0.025 Sum_probs=261.1
Q ss_pred HHHHHHccCCcchHHHHHHHHHhcCCccC-hHhHHHHHHHHHhccchhHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhc
Q 047359 18 VLDCYSHKGLFMDGLEVYRMMRVYGFVPA-VSACNALLDALYRQNEIRLASCLYGAMVRDGVSPN-KFTWSLVAQILCRS 95 (440)
Q Consensus 18 li~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 95 (440)
.-.-|.++|++++|++.+.+..+. .|+ +.-|.....+|...|+++++.+--...++. .|+ +..+..-.+++-..
T Consensus 121 ~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~l 196 (606)
T KOG0547|consen 121 KGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQL 196 (606)
T ss_pred hhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHhh
Confidence 345677889999999999999986 477 777888888889999999999888888774 454 34566666777778
Q ss_pred CChHHHHHHHhcccCCchhHHHHHHHHHhcCChhHHHHHH--------HHHhc--CCCCCCchhhHHHHHHHHHh-----
Q 047359 96 GKFEVVLGLLDSGIYSSVMYNLVIDFYSKKGDFGAAFDRL--------NEMCN--GRNLTPGFSTYSSILDGARR----- 160 (440)
Q Consensus 96 ~~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~--------~~~~~--~~~~~p~~~~~~~l~~~~~~----- 160 (440)
|++++|+.=+ +-.++..++....-..-+.+++ .+-.+ +..+-|+.....+....+-.
T Consensus 197 g~~~eal~D~--------tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~ 268 (606)
T KOG0547|consen 197 GKFDEALFDV--------TVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPL 268 (606)
T ss_pred ccHHHHHHhh--------hHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccccccc
Confidence 8888775421 1112222221111111111111 11111 12233443322222222110
Q ss_pred --------------------cC---ChhhHHHHHHHHHhc-CCCCccc---------ccchHHHHHHHhhcCcHHHHHHH
Q 047359 161 --------------------YE---KTEVSDRIVGLMVEK-KLLPKHF---------LSGNDYVIQKLSDMGKTYAAEMI 207 (440)
Q Consensus 161 --------------------~~---~~~~a~~~~~~~~~~-~~~~~~~---------~~~~~~l~~~~~~~~~~~~a~~~ 207 (440)
.+ .+..+...+.+-... ...++.. ..+.......+.-.|+.-.|..-
T Consensus 269 ~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d 348 (606)
T KOG0547|consen 269 FDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQED 348 (606)
T ss_pred ccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhh
Confidence 00 112222222111110 0111100 11111222334456899999999
Q ss_pred HHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 047359 208 FKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYI 287 (440)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 287 (440)
|+..++..+.++. .|--+...|....+.++..+.|....+.++. ++.+|..-.+...-.+++++|..-|+..+... +
T Consensus 349 ~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-p 425 (606)
T KOG0547|consen 349 FDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-P 425 (606)
T ss_pred HHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-h
Confidence 9999987766443 3777778899999999999999999988765 67788888888888899999999999998764 3
Q ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCC-------cCH
Q 047359 288 PCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGS-------LDV 360 (440)
Q Consensus 288 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-------p~~ 360 (440)
.+...|..+..+..+.+.+++++..|++..+.-+ ..+..|+.....+...++++.|.+.|+..++.... +.+
T Consensus 426 e~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP-~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~p 504 (606)
T KOG0547|consen 426 ENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFP-NCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAP 504 (606)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchh
Confidence 3555666677777788999999999999988744 37889999999999999999999999999875322 112
Q ss_pred HhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Q 047359 361 ATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLKELRKAMKNHDEMLK 422 (440)
Q Consensus 361 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 422 (440)
.+...++..-. .+++..|.++++++.+.+|....++..|.....+.|+.++|+++|++...
T Consensus 505 lV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 505 LVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred hhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 22233333222 38999999999999999999999999999999999999999999998654
No 42
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.70 E-value=1.3e-13 Score=123.34 Aligned_cols=286 Identities=13% Similarity=0.032 Sum_probs=201.1
Q ss_pred HhcCChHHHHHHHhccc---CCchh-HHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCchh--hHHHHHHHHHhcCChhh
Q 047359 93 CRSGKFEVVLGLLDSGI---YSSVM-YNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFS--TYSSILDGARRYEKTEV 166 (440)
Q Consensus 93 ~~~~~~~~a~~~~~~~~---~~~~~-~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~~~~~~ 166 (440)
...|+++.|.+.+.+.. |+... +-....+..+.|+.+.|.+.+.+..+ ..|+.. ........+...|+++.
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~---~~p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAE---LAGNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCcCchHHHHHHHHHHHHCCCHHH
Confidence 35678888888877665 43332 34445667778888888888888765 335543 33334677778899999
Q ss_pred HHHHHHHHHhcCCCCcccccchHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHhHH-HHHHHH---hhhccHHHHHHH
Q 047359 167 SDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCG-CMLKAL---SKEGRVKEAIQI 242 (440)
Q Consensus 167 a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~---~~~~~~~~a~~~ 242 (440)
|...++.+.+.. |++ ......+...+...|+++.|.+.+..+.+.++. +...+. .-..++ ...+..+.+.+.
T Consensus 172 Al~~l~~l~~~~--P~~-~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~ 247 (409)
T TIGR00540 172 ARHGVDKLLEMA--PRH-KEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDG 247 (409)
T ss_pred HHHHHHHHHHhC--CCC-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 999998888875 543 567778888889999999999999988887654 332231 111211 233333333445
Q ss_pred HHHHHHcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhh---HHHHHHHHHcCCCHHHHHHHHHHH
Q 047359 243 YHLISERGIT---VRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAME---LSRFVASQCGKGKWKEVEELLSAV 316 (440)
Q Consensus 243 ~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~ 316 (440)
+..+.+..+. .+...+..+...+...|+.++|.+++++..+.. |+... ...........++.+.+.+.++..
T Consensus 248 L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~ 325 (409)
T TIGR00540 248 LLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQ 325 (409)
T ss_pred HHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHH
Confidence 5555544321 367788888899999999999999999998864 34332 111222233457888899999888
Q ss_pred HhcCCCCch--hhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 047359 317 LDKGLLLDS--FCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKE 388 (440)
Q Consensus 317 ~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 388 (440)
.+..+. |+ ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++...
T Consensus 326 lk~~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 326 AKNVDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHhCCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 876433 44 566788899999999999999999655444578888888999999999999999999998654
No 43
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.69 E-value=3.9e-14 Score=118.71 Aligned_cols=382 Identities=12% Similarity=0.083 Sum_probs=209.7
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhH-HHHHHHHHhcCChHHHHHHHhccc---CCc------hhHHHHH
Q 047359 50 CNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTW-SLVAQILCRSGKFEVVLGLLDSGI---YSS------VMYNLVI 119 (440)
Q Consensus 50 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~---~~~------~~~~~li 119 (440)
...|.+.|.......+|+..|+-+++...-|+.-.. ..+.+.+.+...+.+|+++++-.. |+. ...+.+.
T Consensus 204 l~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nig 283 (840)
T KOG2003|consen 204 LFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIG 283 (840)
T ss_pred HHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcC
Confidence 334455566667788999999999887766765443 335567888889999999987765 332 2355556
Q ss_pred HHHHhcCChhHHHHHHHHHhcCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCccc------ccchHHHHH
Q 047359 120 DFYSKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHF------LSGNDYVIQ 193 (440)
Q Consensus 120 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~~~l~~ 193 (440)
-.+.+.|.++.|+..|+...+ ..|+..+-..|+-++.-.|+-++..+.|.+|+.....|+.. ...-..|+.
T Consensus 284 vtfiq~gqy~dainsfdh~m~---~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~ 360 (840)
T KOG2003|consen 284 VTFIQAGQYDDAINSFDHCME---EAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLN 360 (840)
T ss_pred eeEEecccchhhHhhHHHHHH---hCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHH
Confidence 667889999999999999877 66888766666777778899999999999998754333310 000111221
Q ss_pred HHhhc---------C--cHHHHHHHHHHHHhcCCCCCHHh-------------H--------HHHHHHHhhhccHHHHHH
Q 047359 194 KLSDM---------G--KTYAAEMIFKRACDEKIELQDDT-------------C--------GCMLKALSKEGRVKEAIQ 241 (440)
Q Consensus 194 ~~~~~---------~--~~~~a~~~~~~~~~~~~~~~~~~-------------~--------~~l~~~~~~~~~~~~a~~ 241 (440)
--.+. + +.++++-.-.++..--+.|+-.. + ..-...+.+.|+++.|.+
T Consensus 361 eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aie 440 (840)
T KOG2003|consen 361 EAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIE 440 (840)
T ss_pred HHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHH
Confidence 11111 0 11111111111111111111100 0 011234566677777666
Q ss_pred HHHHHHHcCCCCChhhHHHH--H----------------------------------HHHHhcCChHHHHHHHHHHHHcC
Q 047359 242 IYHLISERGITVRDSDYYAF--V----------------------------------NVLCKEHQPEEVCGLLRDVVERG 285 (440)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~l--~----------------------------------~~~~~~~~~~~a~~~~~~~~~~~ 285 (440)
+++-+.+.+-+.-...-+.+ + .....+|++++|.+.+++.....
T Consensus 441 ilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~nd 520 (840)
T KOG2003|consen 441 ILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNND 520 (840)
T ss_pred HHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCc
Confidence 66655443221111000000 0 00123466777777777776543
Q ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHH
Q 047359 286 YIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDV 365 (440)
Q Consensus 286 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 365 (440)
-.-....|+.=+ .+-..|++++|+..|-++...- ..+......+...|....+...|++++.+.... ++.|+.....
T Consensus 521 asc~ealfnigl-t~e~~~~ldeald~f~klh~il-~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilsk 597 (840)
T KOG2003|consen 521 ASCTEALFNIGL-TAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSK 597 (840)
T ss_pred hHHHHHHHHhcc-cHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHH
Confidence 222222333222 3445577777777766554321 125555556666666666666666666555543 3335556666
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcccHHHHHHHHHHHHHCCCCCCHHHHHHHhhhc
Q 047359 366 LLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDEATYKQVISGF 439 (440)
Q Consensus 366 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~a~ 439 (440)
|...|-+.|+-..|.+..-+--+..|-+..+...|...|....-+++++..|++..- ++|+..-|-.++.+|
T Consensus 598 l~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc 669 (840)
T KOG2003|consen 598 LADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASC 669 (840)
T ss_pred HHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHH
Confidence 666666666666555554444333333444444455555555555555555554433 445555555555444
No 44
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.69 E-value=3.4e-14 Score=124.65 Aligned_cols=285 Identities=13% Similarity=0.034 Sum_probs=217.1
Q ss_pred ChhHHHHHHHHHhcCCCCCCc-hhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCcccccchHHHHHHHhhcCcHHHHH
Q 047359 127 DFGAAFDRLNEMCNGRNLTPG-FSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAE 205 (440)
Q Consensus 127 ~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 205 (440)
+.++|+..|....+ ..++ ......+.++|...+++++|+++|+.+.+....--.....|...+..+.+. -+.
T Consensus 334 ~~~~A~~~~~klp~---h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~L 406 (638)
T KOG1126|consen 334 NCREALNLFEKLPS---HHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VAL 406 (638)
T ss_pred HHHHHHHHHHhhHH---hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHH
Confidence 46788888888654 3333 345567778899999999999999998876422111255666665544332 122
Q ss_pred HHH-HHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 047359 206 MIF-KRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVER 284 (440)
Q Consensus 206 ~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 284 (440)
..+ +.+.+... -.+.+|..+..+|.-.++.+.|++.|++..+.+.. ...+|+.+..-+.....+|.|...|+..+..
T Consensus 407 s~Laq~Li~~~~-~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~ 484 (638)
T KOG1126|consen 407 SYLAQDLIDTDP-NSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGV 484 (638)
T ss_pred HHHHHHHHhhCC-CCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcC
Confidence 222 22333322 36789999999999999999999999999887543 6678888888888889999999999988764
Q ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHH
Q 047359 285 GYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYD 364 (440)
Q Consensus 285 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~ 364 (440)
. +-+...|..+...|.+.++++.|+-.|+++.+.++. +.+....+...+.+.|+.++|+++++++.....+ |+..--
T Consensus 485 ~-~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~ 561 (638)
T KOG1126|consen 485 D-PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKY 561 (638)
T ss_pred C-chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHH
Confidence 2 123345556777889999999999999999987765 7777778888889999999999999999987665 555555
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcccHHHHHHHHHHHHHC
Q 047359 365 VLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLKELRKAMKNHDEMLKM 423 (440)
Q Consensus 365 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 423 (440)
.-+..+...+++++|...++++++.-|.+..++..++..|.+.|+.+.|+.-|-=|.+.
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 56667778899999999999999998888899999999999999999999888877763
No 45
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.67 E-value=2.8e-11 Score=102.40 Aligned_cols=400 Identities=11% Similarity=0.070 Sum_probs=249.0
Q ss_pred ChHhHHHHHHHHHccCCcchHHHHHHHHHhcCCccCh-HhHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHH
Q 047359 11 QSDALSLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAV-SACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVA 89 (440)
Q Consensus 11 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 89 (440)
+...|-..+.+=.++.....|..+++.....- |-+ ..|-..+..=-..|++..|.++|+.-.+. .|+...|.+.+
T Consensus 106 ~itLWlkYae~Emknk~vNhARNv~dRAvt~l--PRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI 181 (677)
T KOG1915|consen 106 NITLWLKYAEFEMKNKQVNHARNVWDRAVTIL--PRVDQLWYKYIYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFI 181 (677)
T ss_pred cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc--chHHHHHHHHHHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHH
Confidence 34444455555555555555555555555431 221 22333333333345555555555555443 45555555555
Q ss_pred HHHHhcCChHHHHHHHhccc---CCchhHHHHHHHHHhcCChhHHHHHHHHHhcCCC-----------------------
Q 047359 90 QILCRSGKFEVVLGLLDSGI---YSSVMYNLVIDFYSKKGDFGAAFDRLNEMCNGRN----------------------- 143 (440)
Q Consensus 90 ~~~~~~~~~~~a~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~----------------------- 143 (440)
+.-.+...++.|..++++.. |++.+|-...+.=.++|....|..+|....+..|
T Consensus 182 ~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~E 261 (677)
T KOG1915|consen 182 KFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYE 261 (677)
T ss_pred HHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555544 5555555555555555555555555544433111
Q ss_pred -----------CCCc---hhhHHHHHHHHHhcCChhhHHHH--------HHHHHhcCCCCcccccchHHHHHHHhhcCcH
Q 047359 144 -----------LTPG---FSTYSSILDGARRYEKTEVSDRI--------VGLMVEKKLLPKHFLSGNDYVIQKLSDMGKT 201 (440)
Q Consensus 144 -----------~~p~---~~~~~~l~~~~~~~~~~~~a~~~--------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 201 (440)
.-|. ...|......--+-|+....... ++.+++.+ |-+ -.+|...++.-...|+.
T Consensus 262 Rar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n--p~n-YDsWfdylrL~e~~g~~ 338 (677)
T KOG1915|consen 262 RARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN--PYN-YDSWFDYLRLEESVGDK 338 (677)
T ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC--CCC-chHHHHHHHHHHhcCCH
Confidence 1111 22233333222233443332222 22333332 222 55677778888888999
Q ss_pred HHHHHHHHHHHhcCCCCCHH-hHHHHHH-----H---HhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHH----HHhc
Q 047359 202 YAAEMIFKRACDEKIELQDD-TCGCMLK-----A---LSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNV----LCKE 268 (440)
Q Consensus 202 ~~a~~~~~~~~~~~~~~~~~-~~~~l~~-----~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~ 268 (440)
+...++|++....-++.... .|.-.|- + =....+.+.+.++|+...+. ++....||.-+--. ..++
T Consensus 339 ~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq 417 (677)
T KOG1915|consen 339 DRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQ 417 (677)
T ss_pred HHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHH
Confidence 99999999998764332221 2222221 1 12468899999999999883 33455666554433 3577
Q ss_pred CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHH
Q 047359 269 HQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALH 348 (440)
Q Consensus 269 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 348 (440)
.+...|.+++...+. .-|...+|...|..-.+.++++.+.+++++.++.++. +..+|......-...|+.+.|..+|
T Consensus 418 ~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaif 494 (677)
T KOG1915|consen 418 LNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIF 494 (677)
T ss_pred cccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHH
Confidence 899999999998875 4688899999999999999999999999999998766 8889999888888999999999999
Q ss_pred HHHHhcc-CCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHH-----hcc-----------cHH
Q 047359 349 IKIEKLK-GSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLC-----HLK-----------ELR 411 (440)
Q Consensus 349 ~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~g-----------~~~ 411 (440)
.-.++.. .......|.+.|+.-...|.++.|..+++.+.+.... ..+|......-. ..| ...
T Consensus 495 elAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h-~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~ 573 (677)
T KOG1915|consen 495 ELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQH-VKVWISFAKFEASASEGQEDEDLAELEITDENIK 573 (677)
T ss_pred HHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhccc-chHHHhHHHHhccccccccccchhhhhcchhHHH
Confidence 9998753 2334557788888888999999999999999887544 225555544333 334 566
Q ss_pred HHHHHHHHHHH
Q 047359 412 KAMKNHDEMLK 422 (440)
Q Consensus 412 ~a~~~~~~m~~ 422 (440)
.|..+|+++..
T Consensus 574 ~AR~iferAn~ 584 (677)
T KOG1915|consen 574 RARKIFERANT 584 (677)
T ss_pred HHHHHHHHHHH
Confidence 78888887654
No 46
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.66 E-value=5.9e-14 Score=123.16 Aligned_cols=285 Identities=12% Similarity=0.056 Sum_probs=223.0
Q ss_pred ChHHHHHHHhccc---C-CchhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCC-CchhhHHHHHHHHHhcCChhhHHHHH
Q 047359 97 KFEVVLGLLDSGI---Y-SSVMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLT-PGFSTYSSILDGARRYEKTEVSDRIV 171 (440)
Q Consensus 97 ~~~~a~~~~~~~~---~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~ 171 (440)
+..+|...|.+++ + +..+...+.++|...+++++|.++|+.+.+..... -+...|.+.+-.+-+ .-+---+-
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~---~v~Ls~La 410 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD---EVALSYLA 410 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh---hHHHHHHH
Confidence 4578888888855 3 33556778899999999999999999997722222 256677777655432 11222223
Q ss_pred HHHHhcCCCCcccccchHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCC
Q 047359 172 GLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGI 251 (440)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 251 (440)
+.+.+.. |+. +.+|-.+.++|.-+++.+.|++.|++....++. ...+|+.+.+-+.....+|.|...|+.......
T Consensus 411 q~Li~~~--~~s-PesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~ 486 (638)
T KOG1126|consen 411 QDLIDTD--PNS-PESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVDP 486 (638)
T ss_pred HHHHhhC--CCC-cHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc
Confidence 3444433 433 789999999999999999999999999887554 778999999999999999999999999887543
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHH
Q 047359 252 TVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSL 331 (440)
Q Consensus 252 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 331 (440)
. +-..|-.+.-.|.+.++++.|+-.|+.+.+-+ +.+.+....+...+-+.|+.++|+.+++++.....+ |+..--..
T Consensus 487 r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~ 563 (638)
T KOG1126|consen 487 R-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHR 563 (638)
T ss_pred h-hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHH
Confidence 3 33445556778999999999999999999865 445666677777888899999999999999887665 66555566
Q ss_pred HHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCC
Q 047359 332 MEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVV 392 (440)
Q Consensus 332 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 392 (440)
+..+...++.++|+..++++++.-++ +...|..+...|.+.|+.+.|+.-|.-+.+.+|+
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~-es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQ-ESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 77788899999999999999985322 5667888899999999999999999999998887
No 47
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=1.1e-11 Score=106.99 Aligned_cols=281 Identities=15% Similarity=0.057 Sum_probs=221.7
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCcccccchHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHH
Q 047359 150 TYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKA 229 (440)
Q Consensus 150 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 229 (440)
....-..-+...+++.+..++.+.+.+... +. ...+..-|.++...|+..+-..+=.++.+..+. .+.+|-++.--
T Consensus 246 ll~~~ad~~y~~c~f~~c~kit~~lle~dp-fh--~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~-~a~sW~aVg~Y 321 (611)
T KOG1173|consen 246 LLAEKADRLYYGCRFKECLKITEELLEKDP-FH--LPCLPLHIACLYELGKSNKLFLLSHKLVDLYPS-KALSWFAVGCY 321 (611)
T ss_pred HHHHHHHHHHHcChHHHHHHHhHHHHhhCC-CC--cchHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CCcchhhHHHH
Confidence 334444556677888999999998887642 22 455666677888999988888888888877655 67789999999
Q ss_pred HhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHH
Q 047359 230 LSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEV 309 (440)
Q Consensus 230 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 309 (440)
|...|+..+|.+.|.+....+.. -...|-.+...+.-.|..|+|...+..+.+.- +-...-+--+.--|.+.++.+.|
T Consensus 322 Yl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 322 YLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLA 399 (611)
T ss_pred HHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHH
Confidence 99999999999999988776543 23578889999999999999999888876541 11111122234457778999999
Q ss_pred HHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhcc--CC----cCHHhHHHHHHHHHhcCcHHHHHHHH
Q 047359 310 EELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLK--GS----LDVATYDVLLDGLFKDGRMEEAVRIF 383 (440)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~----p~~~~~~~l~~~~~~~g~~~~a~~~~ 383 (440)
.+.|.+.....+. |+...+.+.-.....+.+.+|..+|+.....- .. .-..+++.|..+|.+.+.+++|+..+
T Consensus 400 e~Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~ 478 (611)
T KOG1173|consen 400 EKFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYY 478 (611)
T ss_pred HHHHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHH
Confidence 9999999887544 77788888777778899999999999887321 11 13346889999999999999999999
Q ss_pred HHHHHcCCCchhhHHHHHHHHHhcccHHHHHHHHHHHHHCCCCCCHHHHHHHhhhc
Q 047359 384 DYMKELKVVSSSSFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDEATYKQVISGF 439 (440)
Q Consensus 384 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~a~ 439 (440)
++.....+.++.++..+...|...|+++.|.+.|.+.+. +.||..+...+|+-+
T Consensus 479 q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 479 QKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHH
Confidence 999999999999999999999999999999999999987 789998888887643
No 48
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.65 E-value=3.7e-12 Score=105.41 Aligned_cols=292 Identities=14% Similarity=0.104 Sum_probs=187.2
Q ss_pred cCChhHHHHHHHHHhcCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCcccccchHHHHHHHhhcCcHHHH
Q 047359 125 KGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAA 204 (440)
Q Consensus 125 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 204 (440)
.|++.+|.+...+-.+ .+-.| ...|..-.++....|+.+.+...+.+..+....++ ...+..........|+++.|
T Consensus 97 eG~~~qAEkl~~rnae-~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~--l~v~ltrarlll~~~d~~aA 172 (400)
T COG3071 97 EGDFQQAEKLLRRNAE-HGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDT--LAVELTRARLLLNRRDYPAA 172 (400)
T ss_pred cCcHHHHHHHHHHhhh-cCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCch--HHHHHHHHHHHHhCCCchhH
Confidence 4777777777776554 33222 23444555566667777777777777766533344 56666666777777777777
Q ss_pred HHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCCh-------hhHHHHHHHHHhcCChHHHHHH
Q 047359 205 EMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRD-------SDYYAFVNVLCKEHQPEEVCGL 277 (440)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~ 277 (440)
..-...+.+.++. ++........+|.+.|++.....+...+.+.+.-.+. .+|..+++-....+..+.-...
T Consensus 173 ~~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~ 251 (400)
T COG3071 173 RENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTW 251 (400)
T ss_pred HHHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHH
Confidence 7777777766655 5566777777777777777777777777777665443 3455555555555555554555
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCC
Q 047359 278 LRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGS 357 (440)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 357 (440)
|+..... .+.++..-.+++.-+..+|+.++|.++.++..+.+..|+ -...-.+.+.++.+.-++..++-.+.-..
T Consensus 252 W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~ 326 (400)
T COG3071 252 WKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPE 326 (400)
T ss_pred HHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCCC
Confidence 5555433 234555666677777777888888888887777766655 12222445666666666666655544222
Q ss_pred cCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcccHHHHHHHHHHHHHCCCCCC
Q 047359 358 LDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPD 428 (440)
Q Consensus 358 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~ 428 (440)
++..+.+|...|.+.+.+.+|.+.|+...+.. ++...|..+..++.+.|+..+|.++.++.+..-..|+
T Consensus 327 -~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~-~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 327 -DPLLLSTLGRLALKNKLWGKASEALEAALKLR-PSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred -ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcC-CChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 44677777788888888888888888666543 2566777778888888888888887777665333443
No 49
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.64 E-value=3e-12 Score=102.85 Aligned_cols=290 Identities=15% Similarity=0.110 Sum_probs=186.6
Q ss_pred cCChhHHHHHHHHHhcCCCCCC-chhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC-cccccchHHHHHHHhhcCcHH
Q 047359 125 KGDFGAAFDRLNEMCNGRNLTP-GFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLP-KHFLSGNDYVIQKLSDMGKTY 202 (440)
Q Consensus 125 ~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 202 (440)
..+.++|.+.|-+|.+ ..| +..+..+|.+.+.+.|..|.|+++.+.+.++.-.+ +.-..+...|..-|...|-+|
T Consensus 48 s~Q~dKAvdlF~e~l~---~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 48 SNQPDKAVDLFLEMLQ---EDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred hcCcchHHHHHHHHHh---cCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 4567777777777765 223 23355566677777788888888887777652111 111223344666777778888
Q ss_pred HHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcCChHHHHHHH
Q 047359 203 AAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRD----SDYYAFVNVLCKEHQPEEVCGLL 278 (440)
Q Consensus 203 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~ 278 (440)
.|+++|..+.+.+.. -......++..|-...+|++|+++-+++.+.+..+.. ..|.-+...+....+.+.|..++
T Consensus 125 RAE~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l 203 (389)
T COG2956 125 RAEDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELL 203 (389)
T ss_pred HHHHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 888888887765432 3446667778888888888888888877776544332 33445555566677888888888
Q ss_pred HHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCc
Q 047359 279 RDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSL 358 (440)
Q Consensus 279 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 358 (440)
++..+.+ +.++..-..+.+.+...|+++.|.+.++.+.+.++.--+.+...|..+|...|+.++...++.++.+....+
T Consensus 204 ~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~ 282 (389)
T COG2956 204 KKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA 282 (389)
T ss_pred HHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc
Confidence 8887764 334444555666777788888888888888887666566677778888888888888888888887754333
Q ss_pred CHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHH---hcccHHHHHHHHHHHHH
Q 047359 359 DVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLC---HLKELRKAMKNHDEMLK 422 (440)
Q Consensus 359 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~a~~~~~~m~~ 422 (440)
..-..+...-....-.+.|...+.+-....| +...+..++..-. ..|.+.+-+.++++|+.
T Consensus 283 --~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~P-t~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 283 --DAELMLADLIELQEGIDAAQAYLTRQLRRKP-TMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred --cHHHHHHHHHHHhhChHHHHHHHHHHHhhCC-cHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 3333444443444445555555554444433 4444555555443 34556777777777764
No 50
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.64 E-value=1.5e-12 Score=104.59 Aligned_cols=296 Identities=11% Similarity=0.038 Sum_probs=189.8
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhccc--CCch------hHHHHHHH
Q 047359 50 CNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSGKFEVVLGLLDSGI--YSSV------MYNLVIDF 121 (440)
Q Consensus 50 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~------~~~~li~~ 121 (440)
|..-+..+. .++.++|.++|-+|.+.. +.+..+..+|.+.|.+.|..|.|+.+...+. ||.. +.-.|..-
T Consensus 39 Yv~GlNfLL-s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~D 116 (389)
T COG2956 39 YVKGLNFLL-SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRD 116 (389)
T ss_pred HHhHHHHHh-hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Confidence 433343333 357788999998888743 2345566778888888888888888888776 4332 34456677
Q ss_pred HHhcCChhHHHHHHHHHhcCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCcc--cccchHHHHHHHhhcC
Q 047359 122 YSKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKH--FLSGNDYVIQKLSDMG 199 (440)
Q Consensus 122 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~ 199 (440)
|...|-++.|.++|..+.+ .+. --......|+..|-...+|++|+++-+++.+.+..+.+ ....|--+...+....
T Consensus 117 ym~aGl~DRAE~~f~~L~d-e~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~ 194 (389)
T COG2956 117 YMAAGLLDRAEDIFNQLVD-EGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASS 194 (389)
T ss_pred HHHhhhhhHHHHHHHHHhc-chh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhh
Confidence 7888888888888888865 322 12345667888888888888888888888877643331 1223444555555566
Q ss_pred cHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHH
Q 047359 200 KTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLR 279 (440)
Q Consensus 200 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 279 (440)
+.+.|...+.+..+.+++ .+..--.+.......|+++.|.+.++...+.++..-..+...+..+|...|++++....+.
T Consensus 195 ~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~ 273 (389)
T COG2956 195 DVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLR 273 (389)
T ss_pred hHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 777777777777766544 3344445566677778888888888877777666556667777777777888887777777
Q ss_pred HHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHc---CCcHHHHHHHHHHHHhc
Q 047359 280 DVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCS---NRQIDKAIALHIKIEKL 354 (440)
Q Consensus 280 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~ 354 (440)
.+.+.. +....-..+...-......+.|...+.+-... +|+...+..++..-.. .|...+....++.|+..
T Consensus 274 ~~~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 274 RAMETN--TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred HHHHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 777653 23333333333333344455555555544443 4677777777765432 23345555555555543
No 51
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=2.7e-11 Score=102.11 Aligned_cols=328 Identities=12% Similarity=0.027 Sum_probs=233.3
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHhccc-CCchhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCc-hh-hHHHHHH
Q 047359 80 PNKFTWSLVAQILCRSGKFEVVLGLLDSGI-YSSVMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPG-FS-TYSSILD 156 (440)
Q Consensus 80 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~-~~~~l~~ 156 (440)
.|...+-.....+.+.|..+.|...|.... .-+..|.+.+....-..+.+.+..+... ...| .. .=-.+..
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~------l~~~~h~M~~~F~~~ 235 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVG------LPSDMHWMKKFFLKK 235 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhc------CcccchHHHHHHHHH
Confidence 344333333444556677777777776655 3333444444333333333322222111 1111 11 1123444
Q ss_pred HHHhcCChhhHHHHHHHHHhcCCCCcccccchHHHHHHHhhcCcHHHHHHHHHHHHhcCCC--CCHHhHHHHHHHHhhhc
Q 047359 157 GARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIE--LQDDTCGCMLKALSKEG 234 (440)
Q Consensus 157 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~ 234 (440)
++....+.+++..-.+.....|+... ...-+....+.-...|+++|+.+|+++.+..+- -|..+|+.++-.- ..
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~--~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~--~~ 311 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNS--MYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVK--ND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCcc--HHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHH--hh
Confidence 66666777888888888888776655 444444556667788999999999999887431 2556777665333 22
Q ss_pred cHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHH
Q 047359 235 RVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLS 314 (440)
Q Consensus 235 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 314 (440)
+-. +..+-+-...--+..+.|...+.+-|+-.++.++|...|+...+.+ +.....|+.+..-|...++...|.+-++
T Consensus 312 ~sk--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 312 KSK--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred hHH--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 211 1122111111112344677788888899999999999999999876 3456678888889999999999999999
Q ss_pred HHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCch
Q 047359 315 AVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSS 394 (440)
Q Consensus 315 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 394 (440)
...+..+. |...|-.+.++|.-.+...-|+-.|++.....+. |...|.+|..+|.+.++.++|++-|......+-.+.
T Consensus 389 rAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~ 466 (559)
T KOG1155|consen 389 RAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEG 466 (559)
T ss_pred HHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhccccch
Confidence 99998765 8999999999999999999999999999986554 888999999999999999999999999999887788
Q ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHH
Q 047359 395 SSFVIVVSRLCHLKELRKAMKNHDEMLK 422 (440)
Q Consensus 395 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 422 (440)
.++..+...+-+.++.++|.+.|++.++
T Consensus 467 ~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 467 SALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999999999999999999998876
No 52
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.62 E-value=3.9e-12 Score=105.27 Aligned_cols=268 Identities=10% Similarity=-0.005 Sum_probs=225.8
Q ss_pred cCChhhHHHHHHHHHhcCCCCcccccchHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHH
Q 047359 161 YEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAI 240 (440)
Q Consensus 161 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 240 (440)
.|+|..|++...+-.+.+-.| ...|..-+.+....|+.+.+..++.+..+....++....-+........|++..|.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p---~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~ 173 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP---VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAR 173 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch---HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHH
Confidence 699999999999988877666 56777778889999999999999999998766667778888888999999999999
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-------hhHHHHHHHHHcCCCHHHHHHHH
Q 047359 241 QIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCA-------MELSRFVASQCGKGKWKEVEELL 313 (440)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~ 313 (440)
.-..++.+.+.. +........++|.+.|++.....++..+.+.+.-.+. .+|..+++-....+..+.-...+
T Consensus 174 ~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W 252 (400)
T COG3071 174 ENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWW 252 (400)
T ss_pred HHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 999999998766 6678899999999999999999999999998865544 36777777777777767666677
Q ss_pred HHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCc
Q 047359 314 SAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVS 393 (440)
Q Consensus 314 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 393 (440)
+..... .+.++..-.+++.-+.+.|+.++|.++..+..+.+..|+ -...-.+.+.++...-++..++.....+.+
T Consensus 253 ~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~ 327 (400)
T COG3071 253 KNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPED 327 (400)
T ss_pred HhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCCCC
Confidence 766543 334666777888899999999999999999999888776 222335668899999999999999888889
Q ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHCCCCCCHHHHHHHhhhc
Q 047359 394 SSSFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDEATYKQVISGF 439 (440)
Q Consensus 394 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~a~ 439 (440)
+..+.+|...|.+.+.|.+|.+.|+...+ ..|+..+|+.+-.+|
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~ 371 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADAL 371 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHH
Confidence 99999999999999999999999998887 689999998876654
No 53
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.57 E-value=6.3e-13 Score=106.82 Aligned_cols=234 Identities=10% Similarity=-0.027 Sum_probs=201.8
Q ss_pred HHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 047359 189 DYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKE 268 (440)
Q Consensus 189 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 268 (440)
+.+.++|.+.|.+.+|++.++...+. .|-+.||..+-+.|.+..+++.|+.++.+-.+.- +.+......+...+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHH
Confidence 56889999999999999999988876 4566788889999999999999999999988753 23554555677788888
Q ss_pred CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHH
Q 047359 269 HQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALH 348 (440)
Q Consensus 269 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 348 (440)
++.++|.++++...+.. +.++.....+...|.-.++++-|+.+++++...|+. ++..|+.+.-+|.-.++++-++..|
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 99999999999998864 456667777777888889999999999999999988 8889999999999999999999999
Q ss_pred HHHHhccCCcC--HHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcccHHHHHHHHHHHHHCCCC
Q 047359 349 IKIEKLKGSLD--VATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLKELRKAMKNHDEMLKMGHK 426 (440)
Q Consensus 349 ~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 426 (440)
.+....--.|+ ...|..+.......||+..|.+-|+-....++.+..+++.|.-.-.+.|++++|..++..... +.
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s--~~ 459 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKS--VM 459 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhh--hC
Confidence 99887644444 457888888888999999999999999999988999999999999999999999999999877 56
Q ss_pred CCH
Q 047359 427 PDE 429 (440)
Q Consensus 427 p~~ 429 (440)
|+.
T Consensus 460 P~m 462 (478)
T KOG1129|consen 460 PDM 462 (478)
T ss_pred ccc
Confidence 664
No 54
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.56 E-value=4e-12 Score=115.17 Aligned_cols=270 Identities=12% Similarity=0.088 Sum_probs=166.2
Q ss_pred ccCCCCCChHhHHHHHHHHHccCCcchHHHHHHHHHhcCCccChHhHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChh
Q 047359 4 SCEGRDSQSDALSLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKF 83 (440)
Q Consensus 4 ~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 83 (440)
...|+.|+.++|..+|..|+..|+.+.|- +|..|.-...+.+...++.++.+..+.++.+.+. .|...
T Consensus 17 e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aD 84 (1088)
T KOG4318|consen 17 EISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLAD 84 (1088)
T ss_pred HHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchh
Confidence 46799999999999999999999999999 9999998887888889999999999988887776 57888
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhcccCCchhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCchhhHHHHHHHHHhcCC
Q 047359 84 TWSLVAQILCRSGKFEVVLGLLDSGIYSSVMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEK 163 (440)
Q Consensus 84 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 163 (440)
||+.|..+|...||+..- +..++ -...++..+...|.-.....++..+.-..+.-||..+. +......|-
T Consensus 85 tyt~Ll~ayr~hGDli~f-e~veq------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~---illlv~egl 154 (1088)
T KOG4318|consen 85 TYTNLLKAYRIHGDLILF-EVVEQ------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENA---ILLLVLEGL 154 (1088)
T ss_pred HHHHHHHHHHhccchHHH-HHHHH------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHH---HHHHHHHHH
Confidence 999999999999987651 11111 12233344455555555555554432213334444332 222333444
Q ss_pred hhhHHHHHHHHHhcCCCCcccccchHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHH
Q 047359 164 TEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIY 243 (440)
Q Consensus 164 ~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 243 (440)
++.+.+++..+..... .......++-+.... ...+++.+......-.|++.+|..++++-..+|+.+.|..++
T Consensus 155 waqllkll~~~Pvsa~-----~~p~~vfLrqnv~~n--tpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll 227 (1088)
T KOG4318|consen 155 WAQLLKLLAKVPVSAW-----NAPFQVFLRQNVVDN--TPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLL 227 (1088)
T ss_pred HHHHHHHHhhCCcccc-----cchHHHHHHHhccCC--chHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHH
Confidence 5555554443322110 000000122222111 122222222222111466777777777777777777777777
Q ss_pred HHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCC
Q 047359 244 HLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGK 305 (440)
Q Consensus 244 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 305 (440)
.+|.+.|++.+..-|..++-+ .++..-+..+++.|.+.|+.|+..|+...+..+..+|.
T Consensus 228 ~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 228 YEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 777777776666666666544 56666667777777777777777777666655555443
No 55
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.54 E-value=6.5e-10 Score=100.08 Aligned_cols=296 Identities=14% Similarity=0.080 Sum_probs=202.9
Q ss_pred HHHHHHHHHccCCcchHHHHHHHHHhcCCccChHhHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 047359 15 LSLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILCR 94 (440)
Q Consensus 15 ~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 94 (440)
.-.....+...|++++|++.++.-... +.............+.+.|+.++|..+|..+++.+ +.|..-|..+..+..-
T Consensus 7 lLY~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~ 84 (517)
T PF12569_consen 7 LLYKNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGL 84 (517)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhh
Confidence 334556778899999999999886654 33345566777788999999999999999999985 2344445555555522
Q ss_pred c-----CChHHHHHHHhccc---CCchhHHHHHHHHHhcCChh-HHHHHHHHHhcCCCCCCchhhHHHHHHHHHhcCChh
Q 047359 95 S-----GKFEVVLGLLDSGI---YSSVMYNLVIDFYSKKGDFG-AAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTE 165 (440)
Q Consensus 95 ~-----~~~~~a~~~~~~~~---~~~~~~~~li~~~~~~~~~~-~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 165 (440)
. .+.+...++++++. |...+...+.-.+.....+. .+..++..+.. .|+++ +|+.|-..|......+
T Consensus 85 ~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~-KgvPs---lF~~lk~Ly~d~~K~~ 160 (517)
T PF12569_consen 85 QLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLR-KGVPS---LFSNLKPLYKDPEKAA 160 (517)
T ss_pred hcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHh-cCCch---HHHHHHHHHcChhHHH
Confidence 2 25677778888766 44444333332233222333 33445555555 66643 4455555555455555
Q ss_pred hHHHHHHHHHhc----C----------CCCcccccchHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHh
Q 047359 166 VSDRIVGLMVEK----K----------LLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALS 231 (440)
Q Consensus 166 ~a~~~~~~~~~~----~----------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 231 (440)
-..+++...... + -.|+....++..+...|...|++++|++++++.+++.+. .+..|..-...+-
T Consensus 161 ~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilK 239 (517)
T PF12569_consen 161 IIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILK 239 (517)
T ss_pred HHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHH
Confidence 555555555432 1 123312235577788899999999999999999987544 4678888889999
Q ss_pred hhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhH--------HHHHHHHHcC
Q 047359 232 KEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMEL--------SRFVASQCGK 303 (440)
Q Consensus 232 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--------~~l~~~~~~~ 303 (440)
..|++.+|.+.++.....+.. |...-+-.+..+.++|+.++|.+++....+.+..|..... .....+|.+.
T Consensus 240 h~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~ 318 (517)
T PF12569_consen 240 HAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQ 318 (517)
T ss_pred HCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999887754 7777777888889999999999999998876644433222 3346778888
Q ss_pred CCHHHHHHHHHHHHh
Q 047359 304 GKWKEVEELLSAVLD 318 (440)
Q Consensus 304 ~~~~~a~~~~~~~~~ 318 (440)
|++..|++.|..+.+
T Consensus 319 ~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 319 GDYGLALKRFHAVLK 333 (517)
T ss_pred hhHHHHHHHHHHHHH
Confidence 999988887766654
No 56
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.53 E-value=1.2e-10 Score=95.05 Aligned_cols=399 Identities=12% Similarity=0.067 Sum_probs=223.4
Q ss_pred HHHHHccCCcchHHHHHHHHHhcCCccChHhHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh
Q 047359 19 LDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSGKF 98 (440)
Q Consensus 19 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 98 (440)
+.-+....++..|+.+++.-...+-.....+--.+..++.+.|++++|...+..+.+.. .|+...+..|.-++.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 55666778899999998887754433222333345566678899999999999887754 56777788888888888888
Q ss_pred HHHHHHHhcccCCchhHHHHHHHHHh------------------------------cCChhHHHHHHHHHhcCCCCCCch
Q 047359 99 EVVLGLLDSGIYSSVMYNLVIDFYSK------------------------------KGDFGAAFDRLNEMCNGRNLTPGF 148 (440)
Q Consensus 99 ~~a~~~~~~~~~~~~~~~~li~~~~~------------------------------~~~~~~a~~~~~~~~~~~~~~p~~ 148 (440)
.+|..+-.+...++..-..+.....+ .-.+++|++++.+... -.|+-
T Consensus 108 ~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~---dn~ey 184 (557)
T KOG3785|consen 108 IEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQ---DNPEY 184 (557)
T ss_pred HHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHh---cChhh
Confidence 88888877766333333333333333 3445666666666654 23333
Q ss_pred hhHHHHH-HHHHhcCChhhHHHHHHHHHhcCCCCcccccchHHHHHHHhhcCcHHHHHHHHHHH--------------Hh
Q 047359 149 STYSSIL-DGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRA--------------CD 213 (440)
Q Consensus 149 ~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--------------~~ 213 (440)
...|.-+ -+|.+..-++-+.+++.-.++.- |++ +.+-+..+.-..+.=+-..|++-.+.+ .+
T Consensus 185 ~alNVy~ALCyyKlDYydvsqevl~vYL~q~--pdS-tiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~r 261 (557)
T KOG3785|consen 185 IALNVYMALCYYKLDYYDVSQEVLKVYLRQF--PDS-TIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCR 261 (557)
T ss_pred hhhHHHHHHHHHhcchhhhHHHHHHHHHHhC--CCc-HHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHH
Confidence 3333322 24555566666666666555543 331 223332222222221111111111111 11
Q ss_pred cC------------CCC-----CHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHH-----HHhcCCh
Q 047359 214 EK------------IEL-----QDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNV-----LCKEHQP 271 (440)
Q Consensus 214 ~~------------~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~ 271 (440)
++ +-| -+..--.++-.|.+.+++.+|..+.+++... .|-......+..+ .......
T Consensus 262 HNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~aalGQe~gSreHl 339 (557)
T KOG3785|consen 262 HNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVFAALGQETGSREHL 339 (557)
T ss_pred cCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHHHHHhhhhcCcHHHH
Confidence 11 000 0111222344466777777777766654321 2222222222211 1111223
Q ss_pred HHHHHHHHHHHHcCCCCChh-hHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHH
Q 047359 272 EEVCGLLRDVVERGYIPCAM-ELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIK 350 (440)
Q Consensus 272 ~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 350 (440)
.-|...|+..-+++..-|.. --.++...+.-..++++.+-.++.+...-...|...+ .+.++++..|.+.+|+++|-+
T Consensus 340 KiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~ 418 (557)
T KOG3785|consen 340 KIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIR 418 (557)
T ss_pred HHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhh
Confidence 44555555554444332222 2233444555556788888888887766444344333 467888899999999999987
Q ss_pred HHhccCCcCHHhHH-HHHHHHHhcCcHHHHHHHHHHHHHcCCC-chhhHHHHHHHHHhcccHHHHHHHHHHHHHCCCCCC
Q 047359 351 IEKLKGSLDVATYD-VLLDGLFKDGRMEEAVRIFDYMKELKVV-SSSSFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPD 428 (440)
Q Consensus 351 ~~~~~~~p~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~ 428 (440)
+....++ |..+|. .|.++|.+++..+.|..++-++.. +. .-.....+..-|.+.+.+=-|.+.|+.+.. ..|+
T Consensus 419 is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t--~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~--lDP~ 493 (557)
T KOG3785|consen 419 ISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT--PSERFSLLQLIANDCYKANEFYYAAKAFDELEI--LDPT 493 (557)
T ss_pred hcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC--chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc--cCCC
Confidence 7765555 556665 456788899999988777654322 11 223444556677788888778888887766 4566
Q ss_pred HHHH
Q 047359 429 EATY 432 (440)
Q Consensus 429 ~~t~ 432 (440)
...|
T Consensus 494 pEnW 497 (557)
T KOG3785|consen 494 PENW 497 (557)
T ss_pred cccc
Confidence 5544
No 57
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=1.9e-10 Score=97.83 Aligned_cols=370 Identities=14% Similarity=0.093 Sum_probs=243.6
Q ss_pred CCCC-hHhHHHHHHHHHccCCcchHHHHHHHHHhcCCccC-hHhHHHHHHHHHhccchhHHHHHHHHH-HHcCCCCChhh
Q 047359 8 RDSQ-SDALSLVLDCYSHKGLFMDGLEVYRMMRVYGFVPA-VSACNALLDALYRQNEIRLASCLYGAM-VRDGVSPNKFT 84 (440)
Q Consensus 8 ~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~ 84 (440)
..|| +..|+....+|...|+|++..+--....+.+ |+ +..+..-.+++-..|++.+|+.=..-. +-.|+. |..+
T Consensus 144 l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~-n~s~ 220 (606)
T KOG0547|consen 144 LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQ-NASI 220 (606)
T ss_pred cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcc-cchh
Confidence 4577 7888999999999999999998888777754 43 345555556666777777665332222 111221 1111
Q ss_pred HHHHHHHHHhcCChHHHHHHHhc-cc---CCch-----------------------hHHHHHHHHHh--cC---ChhHHH
Q 047359 85 WSLVAQILCRSGKFEVVLGLLDS-GI---YSSV-----------------------MYNLVIDFYSK--KG---DFGAAF 132 (440)
Q Consensus 85 ~~~l~~~~~~~~~~~~a~~~~~~-~~---~~~~-----------------------~~~~li~~~~~--~~---~~~~a~ 132 (440)
--.+=+.+-+.+ ...+.+-+.. -. |+.. ....+..++.. .+ .+..|.
T Consensus 221 ~~~~eR~Lkk~a-~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~ 299 (606)
T KOG0547|consen 221 EPMAERVLKKQA-MKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAY 299 (606)
T ss_pred HHHHHHHHHHHH-HHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHH
Confidence 111111111111 1122222221 00 2211 22222222211 11 334444
Q ss_pred HHHHHHhcCCCCCCch-----hh----HHHHHH--HHHhcCChhhHHHHHHHHHhcCCCCcccccchHHHHHHHhhcCcH
Q 047359 133 DRLNEMCNGRNLTPGF-----ST----YSSILD--GARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKT 201 (440)
Q Consensus 133 ~~~~~~~~~~~~~p~~-----~~----~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 201 (440)
+.+.+-....-..++. .. -..++. .+.-.|+.-.+..-|+..++....+ ...|..+...|....+.
T Consensus 300 ~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~---~~lyI~~a~~y~d~~~~ 376 (606)
T KOG0547|consen 300 DKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAF---NSLYIKRAAAYADENQS 376 (606)
T ss_pred HHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCccc---chHHHHHHHHHhhhhcc
Confidence 4443322111111111 11 111111 2334588889999999999876544 33488889999999999
Q ss_pred HHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 047359 202 YAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDV 281 (440)
Q Consensus 202 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 281 (440)
++....|+...+.++. ++.+|..-.+.+.-.+++++|..=|++.++..+. +...|-.+..+..+.++++++...|++.
T Consensus 377 ~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~ 454 (606)
T KOG0547|consen 377 EKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEA 454 (606)
T ss_pred HHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998776 7788888888888899999999999999887644 5667777777778999999999999999
Q ss_pred HHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCc-------hhhhHHHHHHHHcCCcHHHHHHHHHHHHhc
Q 047359 282 VERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLD-------SFCCSSLMEYYCSNRQIDKAIALHIKIEKL 354 (440)
Q Consensus 282 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 354 (440)
+++ ++..+..|+.....+...++++.|.+.|+...+.....+ +.+.-.++..- =.+++..|.+++++..+.
T Consensus 455 kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~ 532 (606)
T KOG0547|consen 455 KKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIEL 532 (606)
T ss_pred HHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHcc
Confidence 987 566788999999999999999999999999987533211 11112222221 238999999999999986
Q ss_pred cCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHc
Q 047359 355 KGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKEL 389 (440)
Q Consensus 355 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 389 (440)
.++ ....|..|...-.+.|+.++|+++|++....
T Consensus 533 Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 533 DPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred Cch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 554 5568999999999999999999999987654
No 58
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.52 E-value=2.3e-11 Score=100.99 Aligned_cols=200 Identities=11% Similarity=0.072 Sum_probs=133.1
Q ss_pred HHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 047359 220 DDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVAS 299 (440)
Q Consensus 220 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 299 (440)
...+..+...+...|++++|...+++..+.... +...+..+...+...|++++|.+.++...+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPD-DYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 344555566666666666666666666554322 34555666666666777777777776666543 2334455566666
Q ss_pred HHcCCCHHHHHHHHHHHHhcCCCC-chhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHH
Q 047359 300 QCGKGKWKEVEELLSAVLDKGLLL-DSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEE 378 (440)
Q Consensus 300 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 378 (440)
+...|++++|.+.+++.......+ ....+..+...+...|++++|...+.+..+.... +...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHH
Confidence 667777777777777776532211 2345555667777888888888888887765332 45567777788888888888
Q ss_pred HHHHHHHHHHcCCCchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Q 047359 379 AVRIFDYMKELKVVSSSSFVIVVSRLCHLKELRKAMKNHDEMLK 422 (440)
Q Consensus 379 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 422 (440)
|...+++..+..+.++..+..++..+...|+.++|..+.+.+..
T Consensus 188 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 88888888776544666777777777788888888887777654
No 59
>PRK12370 invasion protein regulator; Provisional
Probab=99.52 E-value=1.4e-11 Score=114.61 Aligned_cols=181 Identities=12% Similarity=-0.005 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHH
Q 047359 236 VKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSA 315 (440)
Q Consensus 236 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 315 (440)
+++|...+++..+.++. +...+..+...+...|++++|...++++.+.+ +.+...+..+...+...|++++|...+++
T Consensus 320 ~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~ 397 (553)
T PRK12370 320 MIKAKEHAIKATELDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINE 397 (553)
T ss_pred HHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 45555555555554332 33444444444555555555555555555443 22233444444455555555555555555
Q ss_pred HHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchh
Q 047359 316 VLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSS 395 (440)
Q Consensus 316 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 395 (440)
..+..+. +...+..++..+...|++++|...+++..+...+-+...+..+..++...|+.++|...++++....+.+..
T Consensus 398 Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~ 476 (553)
T PRK12370 398 CLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLI 476 (553)
T ss_pred HHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHH
Confidence 5544322 111122222233344555555555555443321112333444444455555555555555554443333444
Q ss_pred hHHHHHHHHHhcccHHHHHHHHHHHH
Q 047359 396 SFVIVVSRLCHLKELRKAMKNHDEML 421 (440)
Q Consensus 396 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 421 (440)
..+.+...|...|+ +|...++.+.
T Consensus 477 ~~~~l~~~~~~~g~--~a~~~l~~ll 500 (553)
T PRK12370 477 AVNLLYAEYCQNSE--RALPTIREFL 500 (553)
T ss_pred HHHHHHHHHhccHH--HHHHHHHHHH
Confidence 44444444444442 4444444433
No 60
>PRK12370 invasion protein regulator; Provisional
Probab=99.52 E-value=1.5e-11 Score=114.27 Aligned_cols=266 Identities=9% Similarity=-0.008 Sum_probs=188.3
Q ss_pred chhhHHHHHHHHHh-----cCChhhHHHHHHHHHhcCCCCcccccchHHHHHHHh---------hcCcHHHHHHHHHHHH
Q 047359 147 GFSTYSSILDGARR-----YEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLS---------DMGKTYAAEMIFKRAC 212 (440)
Q Consensus 147 ~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~ 212 (440)
+...|...+++... .+++++|...|++..+.. |+. ...|..+..++. ..+++++|...+++..
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld--P~~-a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS--PNS-IAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC--Ccc-HHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 34455555555322 234678999999988754 653 555666655544 2345899999999999
Q ss_pred hcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-h
Q 047359 213 DEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCA-M 291 (440)
Q Consensus 213 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~ 291 (440)
+.++. +...+..+...+...|++++|...|++..+.++. +...+..+...+...|++++|...++...+.+ |+. .
T Consensus 332 ~ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~ 407 (553)
T PRK12370 332 ELDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAA 407 (553)
T ss_pred hcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChh
Confidence 88765 7778888888899999999999999999998644 56678888899999999999999999999875 332 2
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHH
Q 047359 292 ELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLF 371 (440)
Q Consensus 292 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 371 (440)
.+..++..+...|++++|...+++......+-++..+..+..++...|+.++|...+.++...... +....+.+...|.
T Consensus 408 ~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~-~~~~~~~l~~~~~ 486 (553)
T PRK12370 408 AGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT-GLIAVNLLYAEYC 486 (553)
T ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch-hHHHHHHHHHHHh
Confidence 333444456668999999999999876542224555677888889999999999999987664222 3344556666677
Q ss_pred hcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcccHHHHHHHHHHHHHC
Q 047359 372 KDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLKELRKAMKNHDEMLKM 423 (440)
Q Consensus 372 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 423 (440)
..| +.|...++.+.+..-..+.-.......+.-.|+.+.+..+ +++.+.
T Consensus 487 ~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 487 QNS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred ccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 777 4777777776654323221122244455566776666655 887764
No 61
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.52 E-value=1.6e-11 Score=111.43 Aligned_cols=274 Identities=13% Similarity=0.079 Sum_probs=191.1
Q ss_pred HHHHHHHhcCCccChHhHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhcccCCc
Q 047359 33 EVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSGKFEVVLGLLDSGIYSS 112 (440)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 112 (440)
.++-.+...|+.|+..||..+|.-|+..|+.+.|- +|..|.-...+.+...++.++....+.++.+.+. .|..
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk------ep~a 83 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK------EPLA 83 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC------CCch
Confidence 34566777888899999999999999999988888 8888877777777788888888888888877665 3777
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHh-cCCCCcccccchHHH
Q 047359 113 VMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVE-KKLLPKHFLSGNDYV 191 (440)
Q Consensus 113 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~l 191 (440)
.+|..|..+|...||... |+...+ -...+...+...|.-..-..++..+.- .+..|+ -...
T Consensus 84 Dtyt~Ll~ayr~hGDli~----fe~veq---------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpd-----a~n~ 145 (1088)
T KOG4318|consen 84 DTYTNLLKAYRIHGDLIL----FEVVEQ---------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPD-----AENA 145 (1088)
T ss_pred hHHHHHHHHHHhccchHH----HHHHHH---------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchh-----HHHH
Confidence 889999999999888765 222221 112233334444444444444433221 122233 2334
Q ss_pred HHHHhhcCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhh-ccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 047359 192 IQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKE-GRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQ 270 (440)
Q Consensus 192 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 270 (440)
+....-.|-++.+.+++..+....-. .+... .+.-+... ..+++-..+.+...+ .|++.+|..++.+-..+|+
T Consensus 146 illlv~eglwaqllkll~~~Pvsa~~-~p~~v--fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~ 219 (1088)
T KOG4318|consen 146 ILLLVLEGLWAQLLKLLAKVPVSAWN-APFQV--FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGD 219 (1088)
T ss_pred HHHHHHHHHHHHHHHHHhhCCccccc-chHHH--HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCc
Confidence 55556667777777777666443211 11111 23333332 223333333333333 4899999999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCc
Q 047359 271 PEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQ 340 (440)
Q Consensus 271 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 340 (440)
.+.|..++.+|.+.|++.+...|..|+-+ .++..-++.+++.|.+.|+.|+..|+...+..+...|.
T Consensus 220 ~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 220 VDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred hhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 99999999999999999999888888755 78889999999999999999999999988888877555
No 62
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.51 E-value=6.7e-09 Score=91.64 Aligned_cols=92 Identities=9% Similarity=0.010 Sum_probs=54.1
Q ss_pred hHHHHHHHHHccCCcchHHHHHHHHHhc-CCccChHhHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 047359 14 ALSLVLDCYSHKGLFMDGLEVYRMMRVY-GFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQIL 92 (440)
Q Consensus 14 ~~~~li~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 92 (440)
.|-..+..+..+|++......|+..... .+......|...+......+-++-+..++++.++. ++..-.-.+..+
T Consensus 104 Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L 179 (835)
T KOG2047|consen 104 IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYL 179 (835)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHH
Confidence 3444455556666666666666665532 12223345666666666666666777777776653 223355566666
Q ss_pred HhcCChHHHHHHHhccc
Q 047359 93 CRSGKFEVVLGLLDSGI 109 (440)
Q Consensus 93 ~~~~~~~~a~~~~~~~~ 109 (440)
++.+++++|.+.+....
T Consensus 180 ~~~d~~~eaa~~la~vl 196 (835)
T KOG2047|consen 180 AKSDRLDEAAQRLATVL 196 (835)
T ss_pred HhccchHHHHHHHHHhc
Confidence 67777777776666654
No 63
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.50 E-value=3.2e-11 Score=100.14 Aligned_cols=200 Identities=13% Similarity=0.056 Sum_probs=128.7
Q ss_pred cchHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 047359 186 SGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVL 265 (440)
Q Consensus 186 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 265 (440)
..+..+...+...|++++|.+.+++..+..+. +...+..+...+...|++++|.+.+++..+.... +...+..+...+
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~ 109 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHDPD-DYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHH
Confidence 34455556666666666666666665554322 3455566666666667777777777666665432 344555666666
Q ss_pred HhcCChHHHHHHHHHHHHcCC-CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHH
Q 047359 266 CKEHQPEEVCGLLRDVVERGY-IPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKA 344 (440)
Q Consensus 266 ~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 344 (440)
...|++++|...++...+... ......+..+...+...|++++|...+.+....... +...+..+...+...|++++|
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHHH
Confidence 677777777777777665321 122344555666677778888888888777765433 455666777778888888888
Q ss_pred HHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHc
Q 047359 345 IALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKEL 389 (440)
Q Consensus 345 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 389 (440)
...+++..+. ...+...+..+...+...|+.++|..+.+.+...
T Consensus 189 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 189 RAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 8888887765 2335556666777777788888888877766554
No 64
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.49 E-value=4.1e-09 Score=93.04 Aligned_cols=388 Identities=15% Similarity=0.075 Sum_probs=189.6
Q ss_pred cCCcchHHHHHHHHHhcCCccChHhHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHH
Q 047359 25 KGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSGKFEVVLGL 104 (440)
Q Consensus 25 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 104 (440)
.|+-++|....+...+.. ..+.+.|+.+.-.+-..+++++|.+.|......+ +-|...+.-+.-.-+..|+++.....
T Consensus 54 lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~t 131 (700)
T KOG1156|consen 54 LGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLET 131 (700)
T ss_pred ccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHH
Confidence 344444444444444322 2233444444444444445555555555554432 12333343333333333333332222
Q ss_pred Hhccc----CCchhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCchhhHHHHHH------HHHhcCChhhHHHHHHHH
Q 047359 105 LDSGI----YSSVMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILD------GARRYEKTEVSDRIVGLM 174 (440)
Q Consensus 105 ~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~------~~~~~~~~~~a~~~~~~~ 174 (440)
-.+.. .....|..+..++.-.|+...|..++++..+...-.|+...|..... ...+.|..+.|.+.+..-
T Consensus 132 r~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~ 211 (700)
T KOG1156|consen 132 RNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDN 211 (700)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhh
Confidence 22111 22334555555555566666666666666552222344443332221 233445555555444433
Q ss_pred HhcCCCCcccccchHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHhHHHHH-HHHhhhccHHHHH-HHHHHHHHcCCC
Q 047359 175 VEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCML-KALSKEGRVKEAI-QIYHLISERGIT 252 (440)
Q Consensus 175 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~a~-~~~~~~~~~~~~ 252 (440)
...- ... ...-..-...+.+.+++++|..++..+...+ ||..-|...+ .++.+..+.-++. .+|....+.-..
T Consensus 212 e~~i-~Dk--la~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r 286 (700)
T KOG1156|consen 212 EKQI-VDK--LAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPR 286 (700)
T ss_pred hhHH-HHH--HHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcc
Confidence 2211 011 2222233455566666666666666666553 3333333333 3332233333333 444443332111
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHh----cC--------
Q 047359 253 VRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLD----KG-------- 320 (440)
Q Consensus 253 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~-------- 320 (440)
....-..=++......-.+...+++....+.|+++ ++..+...|-.-...+-.+++.-.+.. .|
T Consensus 287 -~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~ 362 (700)
T KOG1156|consen 287 -HECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDG 362 (700)
T ss_pred -cccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCccccc
Confidence 00000001111111222334445555666666554 333333333222222211122211111 10
Q ss_pred --CCCchh--hhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcC-HHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchh
Q 047359 321 --LLLDSF--CCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLD-VATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSS 395 (440)
Q Consensus 321 --~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 395 (440)
-+|... ++-.++..+-+.|+++.|...++..++. .|+ +..|..=.+.+...|+.++|..++++..+.+..|..
T Consensus 363 ~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~ 440 (700)
T KOG1156|consen 363 KQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRA 440 (700)
T ss_pred ccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHH
Confidence 134443 3445677888999999999999988875 333 335555567788899999999999999988766665
Q ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHCCC
Q 047359 396 SFVIVVSRLCHLKELRKAMKNHDEMLKMGH 425 (440)
Q Consensus 396 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 425 (440)
.-..-+....++++.++|.++...+-+.|.
T Consensus 441 INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 441 INSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 555677778889999999999888887664
No 65
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.49 E-value=7e-09 Score=90.61 Aligned_cols=409 Identities=15% Similarity=0.070 Sum_probs=241.1
Q ss_pred HhHHHHHHHHHccCCcchHHHHHHHHHhcCCccChHhHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 047359 13 DALSLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQIL 92 (440)
Q Consensus 13 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 92 (440)
...-+=+..+...|++++|.+....+...+ +.+...+..=+-++++.+++++|..+.+.-... ..+.+-+-.-..+.
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~ 89 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCE 89 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHH
Confidence 334455677788899999999999999876 556677777778899999999999666543211 11111111223444
Q ss_pred HhcCChHHHHHHHhccc-CCchhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCC-CchhhHHHHHHHHHhcCChhhHHHH
Q 047359 93 CRSGKFEVVLGLLDSGI-YSSVMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLT-PGFSTYSSILDGARRYEKTEVSDRI 170 (440)
Q Consensus 93 ~~~~~~~~a~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~ 170 (440)
.+.++.++|+..++... .+..+...-...+.+.|++++|+++|+.+.+ .+.. -+...-..++.+-. +...
T Consensus 90 Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~k-n~~dd~d~~~r~nl~a~~a-------~l~~ 161 (652)
T KOG2376|consen 90 YRLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAK-NNSDDQDEERRANLLAVAA-------ALQV 161 (652)
T ss_pred HHcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHh-cCCchHHHHHHHHHHHHHH-------hhhH
Confidence 57899999999999665 3444666777889999999999999999976 3322 11112222222111 1111
Q ss_pred HHHHHhcCCCCcccccchHHHHHHHhhcCcHHHHHHHHHHHHhcC-------CCCCHH-------hHHHHHHHHhhhccH
Q 047359 171 VGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEK-------IELQDD-------TCGCMLKALSKEGRV 236 (440)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~-------~~~~l~~~~~~~~~~ 236 (440)
+.+......|+.....+....-.+...|++.+|+++++...+.+ -.-+.. +-.-+.-.+...|+-
T Consensus 162 -~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt 240 (652)
T KOG2376|consen 162 -QLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQT 240 (652)
T ss_pred -HHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcch
Confidence 12222233343223333445566778899999999988873211 110111 112234455678999
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHH---HHhcC--------------------------------------------
Q 047359 237 KEAIQIYHLISERGITVRDSDYYAFVNV---LCKEH-------------------------------------------- 269 (440)
Q Consensus 237 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~-------------------------------------------- 269 (440)
++|..+|....+.... |........+- +....
T Consensus 241 ~ea~~iy~~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~ 319 (652)
T KOG2376|consen 241 AEASSIYVDIIKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF 319 (652)
T ss_pred HHHHHHHHHHHHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999888877543 33221111110 00000
Q ss_pred --ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHc--CCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHH
Q 047359 270 --QPEEVCGLLRDVVERGYIPCAMELSRFVASQCG--KGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAI 345 (440)
Q Consensus 270 --~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 345 (440)
..+.+.++..... +..|. ..+..++..+.+ ......+.+++....+....-...+.-..+......|+++.|.
T Consensus 320 tnk~~q~r~~~a~lp--~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~ 396 (652)
T KOG2376|consen 320 TNKMDQVRELSASLP--GMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVAL 396 (652)
T ss_pred hhhHHHHHHHHHhCC--ccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHH
Confidence 0011111100000 11122 233333333322 2245667777776666544434456666777888999999999
Q ss_pred HHHH--------HHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCC---C----chhhHHHHHHHHHhcccH
Q 047359 346 ALHI--------KIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKV---V----SSSSFVIVVSRLCHLKEL 410 (440)
Q Consensus 346 ~~~~--------~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~----~~~~~~~l~~~~~~~g~~ 410 (440)
+++. .+.+.+.. +.+...+...+.+.++.+.|..++.+....-. . -...+..++..-.+.|+-
T Consensus 397 ~il~~~~~~~~ss~~~~~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~ 474 (652)
T KOG2376|consen 397 EILSLFLESWKSSILEAKHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNE 474 (652)
T ss_pred HHHHHHhhhhhhhhhhhccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCch
Confidence 9998 44444433 34556677778888888888888777653211 1 112344444445577999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHhhhcC
Q 047359 411 RKAMKNHDEMLKMGHKPDEATYKQVISGFM 440 (440)
Q Consensus 411 ~~a~~~~~~m~~~~~~p~~~t~~~ll~a~~ 440 (440)
++|..+++++.+. .++|..+...++.+|+
T Consensus 475 ~ea~s~leel~k~-n~~d~~~l~~lV~a~~ 503 (652)
T KOG2376|consen 475 EEASSLLEELVKF-NPNDTDLLVQLVTAYA 503 (652)
T ss_pred HHHHHHHHHHHHh-CCchHHHHHHHHHHHH
Confidence 9999999999884 2677788888887763
No 66
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.48 E-value=1.9e-11 Score=98.52 Aligned_cols=234 Identities=8% Similarity=-0.059 Sum_probs=197.8
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcCCCCcccccchHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHH
Q 047359 151 YSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKAL 230 (440)
Q Consensus 151 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 230 (440)
-+.+.++|.+.|.+.+|.+.++.-++.... +.+|..|.+.|.+..++..|+.++.+-.+.-+. |+....-+...+
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q~~~----~dTfllLskvY~ridQP~~AL~~~~~gld~fP~-~VT~l~g~ARi~ 300 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQFPH----PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPF-DVTYLLGQARIH 300 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhcCCc----hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCc-hhhhhhhhHHHH
Confidence 367889999999999999999998887533 558888999999999999999999998876433 444455577788
Q ss_pred hhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHH
Q 047359 231 SKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVE 310 (440)
Q Consensus 231 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 310 (440)
...++.++|.++|+...+.... +.....++...|.-.++++-|+.+++.+.+.|+. +...|+.+.-+|.-.++++-++
T Consensus 301 eam~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L 378 (478)
T KOG1129|consen 301 EAMEQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVL 378 (478)
T ss_pred HHHHhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhH
Confidence 8899999999999999887543 6777888888899999999999999999999864 6778888888888899999999
Q ss_pred HHHHHHHhcCCCCc--hhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 047359 311 ELLSAVLDKGLLLD--SFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKE 388 (440)
Q Consensus 311 ~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 388 (440)
.-|.+....--.|+ ...|-.+.......||+..|.+.|+-....+.. +...++.|.-.-.+.|++++|..++..+.+
T Consensus 379 ~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 379 PSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 99999886544443 446777888888999999999999998876554 678899999999999999999999999998
Q ss_pred cCCC
Q 047359 389 LKVV 392 (440)
Q Consensus 389 ~~~~ 392 (440)
..|.
T Consensus 458 ~~P~ 461 (478)
T KOG1129|consen 458 VMPD 461 (478)
T ss_pred hCcc
Confidence 8776
No 67
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.47 E-value=6.2e-10 Score=100.19 Aligned_cols=287 Identities=13% Similarity=0.078 Sum_probs=177.2
Q ss_pred HHHHhcCChHHHHHHHhccc---CC-chhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCchhhHHHHHHHHH-hc---
Q 047359 90 QILCRSGKFEVVLGLLDSGI---YS-SVMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDGAR-RY--- 161 (440)
Q Consensus 90 ~~~~~~~~~~~a~~~~~~~~---~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~--- 161 (440)
..+...|++++|++.++... .| ..........+.+.|+.++|..+|..+.+ ..|+...|...+..+. -.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~---rNPdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELID---RNPDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---HCCCcHHHHHHHHHHHhhhccc
Confidence 34455666666666665544 33 23345556667777777777777777766 4465555444443333 11
Q ss_pred --CChhhHHHHHHHHHhcCCCCcccccchHHHHHHHhhcCcH-HHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHH
Q 047359 162 --EKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKT-YAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKE 238 (440)
Q Consensus 162 --~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 238 (440)
.+.+....+++++...- |. ......+.-.+..-..+ ..+..++..+...|+++ +|+.+-..|....+.+-
T Consensus 89 ~~~~~~~~~~~y~~l~~~y--p~--s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~ 161 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKY--PR--SDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAI 161 (517)
T ss_pred ccccHHHHHHHHHHHHHhC--cc--ccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHH
Confidence 23455566666665543 32 11221111111111122 23455666666666543 66666666665555555
Q ss_pred HHHHHHHHHHc----C----------CCCChh--hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHc
Q 047359 239 AIQIYHLISER----G----------ITVRDS--DYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCG 302 (440)
Q Consensus 239 a~~~~~~~~~~----~----------~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 302 (440)
..+++...... + -+|+.. ++..+.+.|...|++++|+++++..+++. +..+..|..-.+.+-+
T Consensus 162 i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh 240 (517)
T PF12569_consen 162 IESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKH 240 (517)
T ss_pred HHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHH
Confidence 55555554332 1 122332 34555677778889999999999888874 2335677777888888
Q ss_pred CCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHh------H--HHHHHHHHhcC
Q 047359 303 KGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVAT------Y--DVLLDGLFKDG 374 (440)
Q Consensus 303 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~------~--~~l~~~~~~~g 374 (440)
.|++.+|.+.++.....+.. |...-+-.+..+.+.|+.++|.+++....+.+..|.... | .....+|.+.|
T Consensus 241 ~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~ 319 (517)
T PF12569_consen 241 AGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQG 319 (517)
T ss_pred CCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHh
Confidence 89999999999888887665 777777788888899999999998888877664333221 2 34466788888
Q ss_pred cHHHHHHHHHHHHH
Q 047359 375 RMEEAVRIFDYMKE 388 (440)
Q Consensus 375 ~~~~a~~~~~~~~~ 388 (440)
++..|++-|..+.+
T Consensus 320 ~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 320 DYGLALKRFHAVLK 333 (517)
T ss_pred hHHHHHHHHHHHHH
Confidence 88888877766544
No 68
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.46 E-value=2.2e-09 Score=96.55 Aligned_cols=128 Identities=13% Similarity=0.034 Sum_probs=106.3
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHh
Q 047359 293 LSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFK 372 (440)
Q Consensus 293 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 372 (440)
|......+.+.++.++|...+.+.....+ .....|......+...|..++|.+.|......++. +..+..++..++.+
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~~~~-l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~-hv~s~~Ala~~lle 730 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASKIDP-LSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPD-HVPSMTALAELLLE 730 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhcch-hhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHH
Confidence 44556667777888888877777766532 25556666667788899999999999988875443 45688899999999
Q ss_pred cCcHHHHHH--HHHHHHHcCCCchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Q 047359 373 DGRMEEAVR--IFDYMKELKVVSSSSFVIVVSRLCHLKELRKAMKNHDEMLK 422 (440)
Q Consensus 373 ~g~~~~a~~--~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 422 (440)
.|+..-|.. ++..+.+.+|.++.+|..+...+.+.|+.+.|.+.|+...+
T Consensus 731 ~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 731 LGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred hCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 999888888 99999999999999999999999999999999999998877
No 69
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.45 E-value=2.6e-08 Score=88.02 Aligned_cols=415 Identities=13% Similarity=0.153 Sum_probs=261.8
Q ss_pred ChHhHHHHHHHHHccCCcchHHHHHHHHHhcCCccChHhHHHHHHHHHhccchhHHHHHHHHHHHcC------CCCChhh
Q 047359 11 QSDALSLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDG------VSPNKFT 84 (440)
Q Consensus 11 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~ 84 (440)
....|...+......+-++-++.++++..+. ++..-+-.|..+++.+++++|.+.+...+... .+.+...
T Consensus 137 H~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~ql 212 (835)
T KOG2047|consen 137 HDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQL 212 (835)
T ss_pred hccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhH
Confidence 3456777888888899999999999999874 44457778889999999999999988775431 2335556
Q ss_pred HHHHHHHHHhcCCh---HHHHHHHhccc---CCch--hHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCchhhHHHHHH
Q 047359 85 WSLVAQILCRSGKF---EVVLGLLDSGI---YSSV--MYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILD 156 (440)
Q Consensus 85 ~~~l~~~~~~~~~~---~~a~~~~~~~~---~~~~--~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 156 (440)
|.-+-+...+..+. -....+++.+. +|.. .|++|.+-|.+.|++++|.++|++... ...+..-|..+.+
T Consensus 213 w~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~---~v~tvrDFt~ifd 289 (835)
T KOG2047|consen 213 WLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQ---TVMTVRDFTQIFD 289 (835)
T ss_pred HHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH---hheehhhHHHHHH
Confidence 77776666665433 23445555555 4543 589999999999999999999999866 2234444555555
Q ss_pred HHHhcC----------------C------hhhHHHHHHHHHhcCC----------CCcccccchHHHHHHHhhcCcHHHH
Q 047359 157 GARRYE----------------K------TEVSDRIVGLMVEKKL----------LPKHFLSGNDYVIQKLSDMGKTYAA 204 (440)
Q Consensus 157 ~~~~~~----------------~------~~~a~~~~~~~~~~~~----------~~~~~~~~~~~l~~~~~~~~~~~~a 204 (440)
+|+.-. + ++-...-|+.+..... .|++ ...|..- .-...|+..+-
T Consensus 290 ~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~n-V~eW~kR--V~l~e~~~~~~ 366 (835)
T KOG2047|consen 290 AYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHN-VEEWHKR--VKLYEGNAAEQ 366 (835)
T ss_pred HHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCcc-HHHHHhh--hhhhcCChHHH
Confidence 544311 1 1222333444433221 1111 2222221 12223566666
Q ss_pred HHHHHHHHhc-CC----CCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCC---hhhHHHHHHHHHhcCChHHHHH
Q 047359 205 EMIFKRACDE-KI----ELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVR---DSDYYAFVNVLCKEHQPEEVCG 276 (440)
Q Consensus 205 ~~~~~~~~~~-~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~ 276 (440)
...+.+..+. ++ ..-...|..+.+.|-..|+++.|..+|++..+...+.- ..+|......-.++.+++.|++
T Consensus 367 i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~ 446 (835)
T KOG2047|consen 367 INTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALK 446 (835)
T ss_pred HHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 7777766543 11 11224678888899999999999999999887654321 2455555566667888999999
Q ss_pred HHHHHHHcCCC-----------------CChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCC
Q 047359 277 LLRDVVERGYI-----------------PCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNR 339 (440)
Q Consensus 277 ~~~~~~~~~~~-----------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 339 (440)
+.+.....--. -+...|+..++..-..|-++....+++++.+..+. ++.+.-.....+-...
T Consensus 447 lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~ 525 (835)
T KOG2047|consen 447 LMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHK 525 (835)
T ss_pred HHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhH
Confidence 88876532111 12345556666666678899999999999887665 3433333333445566
Q ss_pred cHHHHHHHHHHHHhccCCcCH-HhHHHHHHHHHh---cCcHHHHHHHHHHHHHcCCC-chhh-HHHHHHHHHhcccHHHH
Q 047359 340 QIDKAIALHIKIEKLKGSLDV-ATYDVLLDGLFK---DGRMEEAVRIFDYMKELKVV-SSSS-FVIVVSRLCHLKELRKA 413 (440)
Q Consensus 340 ~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~-~~~~-~~~l~~~~~~~g~~~~a 413 (440)
-++++.+++++-+..=.-|+. ..|+..+.-+.+ .-..+.|..+|+++.+.-|+ ...+ |......--+.|....|
T Consensus 526 yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~a 605 (835)
T KOG2047|consen 526 YFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHA 605 (835)
T ss_pred HHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 788888888877665334444 366666655543 34688999999999985554 3333 22222233356888888
Q ss_pred HHHHHHHHHCCCCCCH--HHHHHHhh
Q 047359 414 MKNHDEMLKMGHKPDE--ATYKQVIS 437 (440)
Q Consensus 414 ~~~~~~m~~~~~~p~~--~t~~~ll~ 437 (440)
+.++++... ++++.. ..|+..|+
T Consensus 606 msiyerat~-~v~~a~~l~myni~I~ 630 (835)
T KOG2047|consen 606 MSIYERATS-AVKEAQRLDMYNIYIK 630 (835)
T ss_pred HHHHHHHHh-cCCHHHHHHHHHHHHH
Confidence 888888654 244433 35555543
No 70
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=1.2e-08 Score=85.39 Aligned_cols=274 Identities=13% Similarity=-0.010 Sum_probs=146.5
Q ss_pred CCchhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCchhh-HHHHHHHHHhcCChhhHHHHHHHHHhcCCCCcccccch
Q 047359 110 YSSVMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFST-YSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGN 188 (440)
Q Consensus 110 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 188 (440)
.|+.....+.+.+...|+.++|...|+...- +.|+..+ .....-.+.+.|+++....+...+....- -+ ...|
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~---~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~-~t--a~~w 303 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLC---ANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVK-YT--ASHW 303 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhh---CChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhh-cc--hhhh
Confidence 4445556666666666666666666666643 3343221 11111223445666666665555544320 11 2333
Q ss_pred HHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 047359 189 DYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKE 268 (440)
Q Consensus 189 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 268 (440)
..-+......+++..|+.+-++.++.+.. +...+-.-...+...|++++|.-.|+......+ .+...|..++.+|...
T Consensus 304 fV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap-~rL~~Y~GL~hsYLA~ 381 (564)
T KOG1174|consen 304 FVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLAP-YRLEIYRGLFHSYLAQ 381 (564)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcch-hhHHHHHHHHHHHHhh
Confidence 33344445556666666666666554333 333444444555566666666666666655432 2556666666666666
Q ss_pred CChHHHHHHHHHHHHcCCCCChhhHHHHH-HHHH-cCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHH
Q 047359 269 HQPEEVCGLLRDVVERGYIPCAMELSRFV-ASQC-GKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIA 346 (440)
Q Consensus 269 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 346 (440)
|.+.+|...-+...+. .+.+..+...+. ..+. .-..-++|.+++++.....+. -....+.+...+...|..+.++.
T Consensus 382 ~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~-Y~~AV~~~AEL~~~Eg~~~D~i~ 459 (564)
T KOG1174|consen 382 KRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPI-YTPAVNLIAELCQVEGPTKDIIK 459 (564)
T ss_pred chHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCc-cHHHHHHHHHHHHhhCccchHHH
Confidence 6666666655554432 223344443331 1111 112335666666665554221 22344455556666666666666
Q ss_pred HHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchh
Q 047359 347 LHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSS 395 (440)
Q Consensus 347 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 395 (440)
++++... ..||....+.|.+.+...+.+++|.+.|..+.+.+|.+..
T Consensus 460 LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~ 506 (564)
T KOG1174|consen 460 LLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKR 506 (564)
T ss_pred HHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchH
Confidence 6666655 3456666666666666666666676666666666655443
No 71
>PF13041 PPR_2: PPR repeat family
Probab=99.38 E-value=1e-12 Score=78.42 Aligned_cols=49 Identities=24% Similarity=0.562 Sum_probs=25.2
Q ss_pred cChHhHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 047359 45 PAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILC 93 (440)
Q Consensus 45 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 93 (440)
||..+||.+|.+|++.|++++|.++|++|.+.|++||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4445555555555555555555555555555555555555555555443
No 72
>PF13041 PPR_2: PPR repeat family
Probab=99.38 E-value=1.4e-12 Score=77.83 Aligned_cols=50 Identities=20% Similarity=0.447 Sum_probs=48.6
Q ss_pred CChHhHHHHHHHHHccCCcchHHHHHHHHHhcCCccChHhHHHHHHHHHh
Q 047359 10 SQSDALSLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYR 59 (440)
Q Consensus 10 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 59 (440)
||..+||.+|++|++.|++++|.++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999999999999999999874
No 73
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=1.6e-08 Score=87.98 Aligned_cols=278 Identities=12% Similarity=0.002 Sum_probs=215.5
Q ss_pred CCchhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCcccccchH
Q 047359 110 YSSVMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGND 189 (440)
Q Consensus 110 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 189 (440)
.+.........-+...+++++..++++...+..+ +....+..-|.++...|+..+-..+-..+.+.- |+. ..+|.
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dp--fh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y--P~~-a~sW~ 316 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKDP--FHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY--PSK-ALSWF 316 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCC--CCcchHHHHHHHHHHhcccchHHHHHHHHHHhC--CCC-Ccchh
Confidence 4455566666778888999999999999987333 344455555668889999888888878887764 544 78899
Q ss_pred HHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 047359 190 YVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEH 269 (440)
Q Consensus 190 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 269 (440)
.+.-.|...|...+|.+.|.+....+.. =...|-...++|+-.|..|+|+..|...-+.-.... .-+.-+.--|.+.+
T Consensus 317 aVg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h-lP~LYlgmey~~t~ 394 (611)
T KOG1173|consen 317 AVGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH-LPSLYLGMEYMRTN 394 (611)
T ss_pred hHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc-chHHHHHHHHHHhc
Confidence 9999999999999999999998765443 244788899999999999999999988766421111 11223444577889
Q ss_pred ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhc--CCC----CchhhhHHHHHHHHcCCcHHH
Q 047359 270 QPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDK--GLL----LDSFCCSSLMEYYCSNRQIDK 343 (440)
Q Consensus 270 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~----~~~~~~~~l~~~~~~~~~~~~ 343 (440)
+...|.+.|.+..... +.|+...+-+.-.....+.+.+|..+|+..... .+. .-..+++.|..+|.+.+.+++
T Consensus 395 n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~e 473 (611)
T KOG1173|consen 395 NLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEE 473 (611)
T ss_pred cHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHH
Confidence 9999999999988753 456677777776777789999999999888621 111 134468888999999999999
Q ss_pred HHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhh
Q 047359 344 AIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSS 396 (440)
Q Consensus 344 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 396 (440)
|+..+++......+ +..++.++.-.|...|+++.|++.|.+..-..|.+..+
T Consensus 474 AI~~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~ 525 (611)
T KOG1173|consen 474 AIDYYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFI 525 (611)
T ss_pred HHHHHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHH
Confidence 99999999987555 88999999999999999999999999999887765443
No 74
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.38 E-value=3.6e-08 Score=87.25 Aligned_cols=395 Identities=15% Similarity=0.139 Sum_probs=258.0
Q ss_pred hHHHHHHHHHccCCcchHHHHHHHHHhcCCccChHhHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 047359 14 ALSLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILC 93 (440)
Q Consensus 14 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 93 (440)
.|-..+.+| ..+++...+++.+.+.+.. +....+.....-.+...|+-++|.+..+...+..+ .+.+.|..+.-.+.
T Consensus 10 lF~~~lk~y-E~kQYkkgLK~~~~iL~k~-~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~-~S~vCwHv~gl~~R 86 (700)
T KOG1156|consen 10 LFRRALKCY-ETKQYKKGLKLIKQILKKF-PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDL-KSHVCWHVLGLLQR 86 (700)
T ss_pred HHHHHHHHH-HHHHHHhHHHHHHHHHHhC-CccchhHHhccchhhcccchHHHHHHHHHHhccCc-ccchhHHHHHHHHh
Confidence 344444444 6778888888888888732 33344444444445667889999999888877543 36677888887777
Q ss_pred hcCChHHHHHHHhccc----CCchhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCchh-hHHHHHHHHHhcCChhhHH
Q 047359 94 RSGKFEVVLGLLDSGI----YSSVMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFS-TYSSILDGARRYEKTEVSD 168 (440)
Q Consensus 94 ~~~~~~~a~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~ 168 (440)
...++++|++.|.... .|...|.-+.-.-.+.|+++.....-....+ ..|+.. .|..+..++.-.|+...|.
T Consensus 87 ~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLq---l~~~~ra~w~~~Avs~~L~g~y~~A~ 163 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQ---LRPSQRASWIGFAVAQHLLGEYKMAL 163 (700)
T ss_pred hhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHH---hhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 7889999999999877 4556677777777788999888888888766 555544 7778888888899999999
Q ss_pred HHHHHHHhcCC-CCcccccchHH------HHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHH
Q 047359 169 RIVGLMVEKKL-LPKHFLSGNDY------VIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQ 241 (440)
Q Consensus 169 ~~~~~~~~~~~-~~~~~~~~~~~------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 241 (440)
.++++..+... .|+ ...+.. -.....+.|..+.|.+.+......-+. ....-..-...+.+.+++++|..
T Consensus 164 ~il~ef~~t~~~~~s--~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~D-kla~~e~ka~l~~kl~~lEeA~~ 240 (700)
T KOG1156|consen 164 EILEEFEKTQNTSPS--KEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVD-KLAFEETKADLLMKLGQLEEAVK 240 (700)
T ss_pred HHHHHHHHhhccCCC--HHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHH-HHHHhhhHHHHHHHHhhHHhHHH
Confidence 99999887652 344 333322 234566778888888887766543221 22223344566788899999999
Q ss_pred HHHHHHHcCCCCChhhHHHHHH-HHHhcCChHHHH-HHHHHHHHcCCCCChhhHHHH-HHHHHcCCCHHHHHHHHHHHHh
Q 047359 242 IYHLISERGITVRDSDYYAFVN-VLCKEHQPEEVC-GLLRDVVERGYIPCAMELSRF-VASQCGKGKWKEVEELLSAVLD 318 (440)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~ 318 (440)
++..+...+ ||...|...+. ++.+-.+.-++. .+|....+. .|....-..+ +.......-.+..-+++....+
T Consensus 241 ~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~ 316 (700)
T KOG1156|consen 241 VYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLS 316 (700)
T ss_pred HHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhh
Confidence 999999875 56555554444 443333444444 556555443 1221111111 1111122233445566777777
Q ss_pred cCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHH----hcc----------CCcCHHhH--HHHHHHHHhcCcHHHHHHH
Q 047359 319 KGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIE----KLK----------GSLDVATY--DVLLDGLFKDGRMEEAVRI 382 (440)
Q Consensus 319 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~----------~~p~~~~~--~~l~~~~~~~g~~~~a~~~ 382 (440)
.|+++ ++..+...|-.....+-..++...+. ..| -.|....| ..++..+-+.|+++.|...
T Consensus 317 Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~y 393 (700)
T KOG1156|consen 317 KGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEY 393 (700)
T ss_pred cCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 77654 33444444433222221112211111 111 13455444 4567788999999999999
Q ss_pred HHHHHHcCCCchhhHHHHHHHHHhcccHHHHHHHHHHHHHCC
Q 047359 383 FDYMKELKVVSSSSFVIVVSRLCHLKELRKAMKNHDEMLKMG 424 (440)
Q Consensus 383 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 424 (440)
++.+..+-|.-+..|..-.+.+...|++++|...+++..+..
T Consensus 394 Id~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD 435 (700)
T KOG1156|consen 394 IDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD 435 (700)
T ss_pred HHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc
Confidence 999999877777788888899999999999999999998743
No 75
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.37 E-value=1.5e-09 Score=92.53 Aligned_cols=231 Identities=15% Similarity=0.050 Sum_probs=135.5
Q ss_pred ChhhHHHHHHHHHhcC-CCCcccccchHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHH
Q 047359 163 KTEVSDRIVGLMVEKK-LLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQ 241 (440)
Q Consensus 163 ~~~~a~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 241 (440)
..+.++.-+.+++... ..|+.....|..+...+...|+.++|...|++..+..+. +...|+.+...+...|++++|..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHHH
Confidence 3444555555555432 233322445666667777777777777777777776554 56677777777778888888888
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCC
Q 047359 242 IYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGL 321 (440)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 321 (440)
.|+...+..+. +..++..+..++...|++++|.+.++...+.. |+..............++.++|...+.+.....
T Consensus 120 ~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~- 195 (296)
T PRK11189 120 AFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL- 195 (296)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-
Confidence 88777775433 44566667777777788888888887777653 333211111222334567788888886654332
Q ss_pred CCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhc---cC--C-cCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCC-ch
Q 047359 322 LLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKL---KG--S-LDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVV-SS 394 (440)
Q Consensus 322 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~--~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~ 394 (440)
.|+... ..+.. ...|+...+ +.+..+.+. .+ . .....|..+...+.+.|++++|...|+++.+.+|. ..
T Consensus 196 ~~~~~~-~~~~~--~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~ 271 (296)
T PRK11189 196 DKEQWG-WNIVE--FYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFV 271 (296)
T ss_pred CccccH-HHHHH--HHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHH
Confidence 222221 12222 234444333 233333321 11 1 12356778888888888888888888888887765 33
Q ss_pred hhHHHHHH
Q 047359 395 SSFVIVVS 402 (440)
Q Consensus 395 ~~~~~l~~ 402 (440)
..-..++.
T Consensus 272 e~~~~~~e 279 (296)
T PRK11189 272 EHRYALLE 279 (296)
T ss_pred HHHHHHHH
Confidence 33333333
No 76
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=7.8e-09 Score=86.43 Aligned_cols=400 Identities=9% Similarity=-0.004 Sum_probs=257.6
Q ss_pred ChHhHHHHHHHHHccCCcchHHHHHHHHHhcCCccChHhHHHHHHHHHhcc--chhHHHHHHHHHHHcCCCCChhhHHHH
Q 047359 11 QSDALSLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQN--EIRLASCLYGAMVRDGVSPNKFTWSLV 88 (440)
Q Consensus 11 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l 88 (440)
+...-...+.+|...++-+.|...+...+... ....-|.++..+...| ..+.....-+-+++. +.-......+
T Consensus 96 ~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~---r~p~inlMla~l~~~g~r~~~~vl~ykevvrec--p~aL~~i~~l 170 (564)
T KOG1174|consen 96 DAEQRRRAAECYRQIGNTDMAIETLLQVPPTL---RSPRINLMLARLQHHGSRHKEAVLAYKEVIREC--PMALQVIEAL 170 (564)
T ss_pred cHHHHHHHHHHHHHHccchHHHHHHhcCCccc---cchhHHHHHHHHHhccccccHHHHhhhHHHHhc--chHHHHHHHH
Confidence 34444567788888888888888877665432 2222333343333332 233333333333332 1111112222
Q ss_pred HHHHHhcCChHHHHHHHhccc--CCchhHHHHHHHHHh--cCChhHHHHHHHHHhcCCCCCCchhhHHHHHHHHHhcCCh
Q 047359 89 AQILCRSGKFEVVLGLLDSGI--YSSVMYNLVIDFYSK--KGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKT 164 (440)
Q Consensus 89 ~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~li~~~~~--~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 164 (440)
+..-.+ -.+.+--....+. +...+....+.++++ .++...|...+-.+.....++-|......+..++...|+.
T Consensus 171 l~l~v~--g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn 248 (564)
T KOG1174|consen 171 LELGVN--GNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDY 248 (564)
T ss_pred HHHhhc--chhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCc
Confidence 221111 1112211222222 333334444555443 4565566555555544234555677888999999999999
Q ss_pred hhHHHHHHHHHhcCCCCcccccchHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHH
Q 047359 165 EVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYH 244 (440)
Q Consensus 165 ~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 244 (440)
++|...|+.....+ |.. ........-.+.+.|+.+....+...+....- -+...|-.-+......++++.|+.+-+
T Consensus 249 ~~a~~~Fe~~~~~d--py~-i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~-~ta~~wfV~~~~l~~~K~~~rAL~~~e 324 (564)
T KOG1174|consen 249 FQAEDIFSSTLCAN--PDN-VEAMDLYAVLLGQEGGCEQDSALMDYLFAKVK-YTASHWFVHAQLLYDEKKFERALNFVE 324 (564)
T ss_pred hHHHHHHHHHhhCC--hhh-hhhHHHHHHHHHhccCHhhHHHHHHHHHhhhh-cchhhhhhhhhhhhhhhhHHHHHHHHH
Confidence 99999999987754 432 33333334456677888888777777655321 133345445555667889999999999
Q ss_pred HHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCc
Q 047359 245 LISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLD 324 (440)
Q Consensus 245 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 324 (440)
+.++.+.. +...+-.-...+...+++++|.-.|+...... +.+..+|..|+.+|...|++.+|...-+...+.- ..+
T Consensus 325 K~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~-~~s 401 (564)
T KOG1174|consen 325 KCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLF-QNS 401 (564)
T ss_pred HHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh-hcc
Confidence 98886543 44455555567888999999999999987653 4577899999999999999999988877766542 225
Q ss_pred hhhhHHHH-HHHH-cCCcHHHHHHHHHHHHhccCCcC-HHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHH
Q 047359 325 SFCCSSLM-EYYC-SNRQIDKAIALHIKIEKLKGSLD-VATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVV 401 (440)
Q Consensus 325 ~~~~~~l~-~~~~-~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 401 (440)
..+.+.+. ..+. ...--++|.++++...+. .|+ ....+.+...+...|..+.++.++++..... .|....+.|.
T Consensus 402 A~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~-~D~~LH~~Lg 478 (564)
T KOG1174|consen 402 ARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIF-PDVNLHNHLG 478 (564)
T ss_pred hhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhc-cccHHHHHHH
Confidence 55555552 3333 334468899999988874 343 4566788888999999999999999887642 3667788899
Q ss_pred HHHHhcccHHHHHHHHHHHHHCCCCCCH
Q 047359 402 SRLCHLKELRKAMKNHDEMLKMGHKPDE 429 (440)
Q Consensus 402 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 429 (440)
..+...+.+++|.+.|...+. +.|+.
T Consensus 479 d~~~A~Ne~Q~am~~y~~ALr--~dP~~ 504 (564)
T KOG1174|consen 479 DIMRAQNEPQKAMEYYYKALR--QDPKS 504 (564)
T ss_pred HHHHHhhhHHHHHHHHHHHHh--cCccc
Confidence 999999999999999998887 45544
No 77
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.35 E-value=7e-08 Score=87.21 Aligned_cols=357 Identities=13% Similarity=0.036 Sum_probs=235.3
Q ss_pred HHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhccc----CCchhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCc
Q 047359 72 AMVRDGVSPNKFTWSLVAQILCRSGKFEVVLGLLDSGI----YSSVMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPG 147 (440)
Q Consensus 72 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~ 147 (440)
++....+.-|...|..|.-+....|+++.+.+.|++.. .....|..+...|...|.-..|..+++.-.. ..-.|+
T Consensus 313 k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~-~~~~ps 391 (799)
T KOG4162|consen 313 KLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLK-KSEQPS 391 (799)
T ss_pred HHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcc-cccCCC
Confidence 33334456678889999999999999999999999977 5556799999999999999999999988765 221243
Q ss_pred -hhhHHHHHHHHH-hcCChhhHHHHHHHHHhc--CCCCcccccchHHHHHHHhhc-----------CcHHHHHHHHHHHH
Q 047359 148 -FSTYSSILDGAR-RYEKTEVSDRIVGLMVEK--KLLPKHFLSGNDYVIQKLSDM-----------GKTYAAEMIFKRAC 212 (440)
Q Consensus 148 -~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~ 212 (440)
...+-..-..|. +.+..++++..-.+++.. +....-....|..+.-+|... ....++.+.+++..
T Consensus 392 ~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av 471 (799)
T KOG4162|consen 392 DISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAV 471 (799)
T ss_pred cchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHH
Confidence 333333334443 447777777777666652 111110134455555554433 23456777788877
Q ss_pred hcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc-CCC----
Q 047359 213 DEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVER-GYI---- 287 (440)
Q Consensus 213 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~---- 287 (440)
+.++. |+...--+.--|+..++.+.|.+..++..+.+...+...|..+.-.+...+++.+|+.+.+...+. |..
T Consensus 472 ~~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~ 550 (799)
T KOG4162|consen 472 QFDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLM 550 (799)
T ss_pred hcCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhc
Confidence 76554 332322344457778899999999999998866678888998888899999999999998877643 110
Q ss_pred --------------CChhhHHHHHHHHHc-----------------------CCCHHHHHHHHHHHH--------hcC--
Q 047359 288 --------------PCAMELSRFVASQCG-----------------------KGKWKEVEELLSAVL--------DKG-- 320 (440)
Q Consensus 288 --------------~~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~~~--------~~~-- 320 (440)
....|...++..+-. .++..++.+..+.+. ..+
T Consensus 551 ~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se 630 (799)
T KOG4162|consen 551 DGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSE 630 (799)
T ss_pred hhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccc
Confidence 001122222222110 011111111111110 001
Q ss_pred -------C--CCc------hhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHH
Q 047359 321 -------L--LLD------SFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDY 385 (440)
Q Consensus 321 -------~--~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 385 (440)
. .|+ ...|......+.+.+..++|...+.+..+.. ......|......+...|+.++|.+.|..
T Consensus 631 ~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~ 709 (799)
T KOG4162|consen 631 LKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLV 709 (799)
T ss_pred cccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHH
Confidence 0 111 1234455566778888888888888877653 23566777777888899999999999999
Q ss_pred HHHcCCCchhhHHHHHHHHHhcccHHHHHH--HHHHHHHCCCCCCHHHHH
Q 047359 386 MKELKVVSSSSFVIVVSRLCHLKELRKAMK--NHDEMLKMGHKPDEATYK 433 (440)
Q Consensus 386 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~--~~~~m~~~~~~p~~~t~~ 433 (440)
....+|.++.....+...+.+.|+..-|.. ++.++++ +.|+..-+.
T Consensus 710 Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr--~dp~n~eaW 757 (799)
T KOG4162|consen 710 ALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALR--LDPLNHEAW 757 (799)
T ss_pred HHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHh--hCCCCHHHH
Confidence 999999999999999999999998777777 8999988 566654433
No 78
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.35 E-value=1.4e-09 Score=96.90 Aligned_cols=233 Identities=15% Similarity=0.102 Sum_probs=121.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhccc-----------CCchh-HHHHHHHHHhcCChhHHHHHHHHHhcC----CC-CCC
Q 047359 84 TWSLVAQILCRSGKFEVVLGLLDSGI-----------YSSVM-YNLVIDFYSKKGDFGAAFDRLNEMCNG----RN-LTP 146 (440)
Q Consensus 84 ~~~~l~~~~~~~~~~~~a~~~~~~~~-----------~~~~~-~~~li~~~~~~~~~~~a~~~~~~~~~~----~~-~~p 146 (440)
+...+...|...|+++.|+.+++... |...+ .+.+...|...+++.+|..+|+++... .| ..|
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 33334455555555555555544433 11111 233555666667777777666666431 11 222
Q ss_pred c-hhhHHHHHHHHHhcCChhhHHHHHHHHHhc-----CCCCcccccchHHHHHHHhhcCcHHHHHHHHHHHHhc---CCC
Q 047359 147 G-FSTYSSILDGARRYEKTEVSDRIVGLMVEK-----KLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDE---KIE 217 (440)
Q Consensus 147 ~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~ 217 (440)
. ..+++.|..+|.+.|++++|...++...+. +..+......++.++..+...++++.|..++....+. -+.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 2 236666777788888888777776665431 2222222334555666666777777777766654331 111
Q ss_pred CC----HHhHHHHHHHHhhhccHHHHHHHHHHHHHcC----C---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc--
Q 047359 218 LQ----DDTCGCMLKALSKEGRVKEAIQIYHLISERG----I---TVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVER-- 284 (440)
Q Consensus 218 ~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-- 284 (440)
++ ..+++.|...|...|++++|.++++...... . .-....++.+...|.+.+++.+|..+|.+...-
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 11 2356666667777777777777766654431 1 111234555666666666666666665554321
Q ss_pred --C--CCCChhhHHHHHHHHHcCCCHHHHHHHHHHH
Q 047359 285 --G--YIPCAMELSRFVASQCGKGKWKEVEELLSAV 316 (440)
Q Consensus 285 --~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 316 (440)
| .+....+|..|...|...|+++.|.++.+.+
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKV 476 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 1 1111234445555555555555555554444
No 79
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=2.5e-08 Score=86.36 Aligned_cols=395 Identities=13% Similarity=0.026 Sum_probs=242.7
Q ss_pred HHHccCCcchHHHHHHHHHhcCCccChHhHHHHHHHHHhccchhHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCChH
Q 047359 21 CYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPN-KFTWSLVAQILCRSGKFE 99 (440)
Q Consensus 21 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~ 99 (440)
+....|+++.|+..|-+..... ++|...|..-..++++.|++++|.+=-.+-++. .|+ ..-|.....++.-.|+++
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred hhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHH
Confidence 4567899999999999999876 458888999999999999999998877777664 455 457888999999999999
Q ss_pred HHHHHHhccc----CCchhHHHHHHHHHhcCChhHH---HHHHHHHhcC--CCCCCchhhHHHHHHHHHhc-------CC
Q 047359 100 VVLGLLDSGI----YSSVMYNLVIDFYSKKGDFGAA---FDRLNEMCNG--RNLTPGFSTYSSILDGARRY-------EK 163 (440)
Q Consensus 100 ~a~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a---~~~~~~~~~~--~~~~p~~~~~~~l~~~~~~~-------~~ 163 (440)
+|+.-|.+.. .+...++.+..++.......+. -.++...... .........|..++...-+. .+
T Consensus 88 eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~ 167 (539)
T KOG0548|consen 88 EAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLN 167 (539)
T ss_pred HHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccc
Confidence 9999998876 3445567777666211000000 0011111000 00000111233333222111 00
Q ss_pred hhhHHHHHHHHH--------hcC-------CCCc-----------c---------cccchHHHHHHHhhcCcHHHHHHHH
Q 047359 164 TEVSDRIVGLMV--------EKK-------LLPK-----------H---------FLSGNDYVIQKLSDMGKTYAAEMIF 208 (440)
Q Consensus 164 ~~~a~~~~~~~~--------~~~-------~~~~-----------~---------~~~~~~~l~~~~~~~~~~~~a~~~~ 208 (440)
.+...+....+. ..+ ..|. . ...-...+.+...+..+++.|.+-+
T Consensus 168 d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y 247 (539)
T KOG0548|consen 168 DPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHY 247 (539)
T ss_pred cHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHH
Confidence 111111111111 000 0110 0 0112234566666777788888888
Q ss_pred HHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHH-------HHHHHHhcCChHHHHHHHHHH
Q 047359 209 KRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYA-------FVNVLCKEHQPEEVCGLLRDV 281 (440)
Q Consensus 209 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~~~~~~a~~~~~~~ 281 (440)
....+.. -+..-++....+|...|.+.++...-....+.|.. ...-|+. +..++.+.++++.+...+...
T Consensus 248 ~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ka 324 (539)
T KOG0548|consen 248 AKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKA 324 (539)
T ss_pred HHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHH
Confidence 7777665 35555666667777777777776666665555432 1222222 333455567777788877776
Q ss_pred HHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHH
Q 047359 282 VERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVA 361 (440)
Q Consensus 282 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 361 (440)
......|+. ..+....+++.+......-.++.. ..-...-...+.+.|++..|...|.++++..+. |..
T Consensus 325 Lte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~-Da~ 393 (539)
T KOG0548|consen 325 LTEHRTPDL---------LSKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPE-DAR 393 (539)
T ss_pred hhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCc-hhH
Confidence 654333321 112233444444444333322221 111112245677889999999999999988754 788
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcccHHHHHHHHHHHHHCCCCCCHHHHHH
Q 047359 362 TYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDEATYKQ 434 (440)
Q Consensus 362 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ 434 (440)
.|....-+|.+.|.+..|++-.+...+.+|.....|..-..++....+|++|.+.|++.++. .|+..-+..
T Consensus 394 lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~--dp~~~e~~~ 464 (539)
T KOG0548|consen 394 LYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL--DPSNAEAID 464 (539)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CchhHHHHH
Confidence 99999999999999999999999999998887788888888888889999999999998884 466554433
No 80
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.33 E-value=8.5e-09 Score=84.53 Aligned_cols=364 Identities=13% Similarity=0.130 Sum_probs=219.6
Q ss_pred HHHHHHccCCcchHHHHHHHHHhcCCccChHhHHHHHHHHHhccchhHHHHHHHHHHHcCC-------------------
Q 047359 18 VLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGV------------------- 78 (440)
Q Consensus 18 li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~------------------- 78 (440)
+..++.+.|++++|+..+..+.+.. .++...+-.|.-...-.|.+.+|..+-....+..+
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~ 141 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRIL 141 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHH
Confidence 6678889999999999999988755 45666666666666667788888776555432110
Q ss_pred ------CCChhhHHHHHHHHHhcCChHHHHHHHhccc---CCchhHHHHH-HHHHhcCChhHHHHHHHHHhcCCCCCCch
Q 047359 79 ------SPNKFTWSLVAQILCRSGKFEVVLGLLDSGI---YSSVMYNLVI-DFYSKKGDFGAAFDRLNEMCNGRNLTPGF 148 (440)
Q Consensus 79 ------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~li-~~~~~~~~~~~a~~~~~~~~~~~~~~p~~ 148 (440)
+....--.+|.+..--.-.+.+|++++.+.. |+-...|..+ -+|.+..-++-+.+++.-..+ ..||.
T Consensus 142 ~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~---q~pdS 218 (557)
T KOG3785|consen 142 TFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLR---QFPDS 218 (557)
T ss_pred HHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHH---hCCCc
Confidence 0000111222333223335667888888877 4444455443 466777888888888887765 33443
Q ss_pred -hhHHHHHHHHHhcCChhhHHHHH--------------HHHHhcC------------CCCc---ccccchHHHHHHHhhc
Q 047359 149 -STYSSILDGARRYEKTEVSDRIV--------------GLMVEKK------------LLPK---HFLSGNDYVIQKLSDM 198 (440)
Q Consensus 149 -~~~~~l~~~~~~~~~~~~a~~~~--------------~~~~~~~------------~~~~---~~~~~~~~l~~~~~~~ 198 (440)
...|.......+.-+-..|..-. +.+.+.+ +.|. ..+.+-..++-.|.+.
T Consensus 219 tiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q 298 (557)
T KOG3785|consen 219 TIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQ 298 (557)
T ss_pred HHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeeccc
Confidence 34443333333221111111111 1111111 0110 1122334567778899
Q ss_pred CcHHHHHHHHHHHHhcCCCCCHHhHHHHHHH-----HhhhccHHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChH
Q 047359 199 GKTYAAEMIFKRACDEKIELQDDTCGCMLKA-----LSKEGRVKEAIQIYHLISERGITVRD-SDYYAFVNVLCKEHQPE 272 (440)
Q Consensus 199 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~ 272 (440)
+++.+|..+.+.+... .|-......+..+ ........-|.+.|.-.-+++..-|. .--.++.+.+.-..+++
T Consensus 299 ~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFd 376 (557)
T KOG3785|consen 299 NDVQEAISLCKDLDPT--TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFD 376 (557)
T ss_pred ccHHHHHHHHhhcCCC--ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHH
Confidence 9999999888766431 2222222222221 22223355666777666555433332 22344556666667899
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhH-HHHHHHHcCCcHHHHHHHHHHH
Q 047359 273 EVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCS-SLMEYYCSNRQIDKAIALHIKI 351 (440)
Q Consensus 273 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~ 351 (440)
+++..+..+..--...|...+ .+.++++..|++.+|+++|-.+....++ |..+|. .+.++|.+.+.++.|++++-++
T Consensus 377 dVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~ 454 (557)
T KOG3785|consen 377 DVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKT 454 (557)
T ss_pred HHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhc
Confidence 999999988876433343333 5778899999999999999888776666 555554 5667899999999999886444
Q ss_pred HhccCCcCHH-hHHHHHHHHHhcCcHHHHHHHHHHHHHcCCC
Q 047359 352 EKLKGSLDVA-TYDVLLDGLFKDGRMEEAVRIFDYMKELKVV 392 (440)
Q Consensus 352 ~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 392 (440)
.. ..+.. ....+..-|.+++.+--|.+.|+.+...+|.
T Consensus 455 ~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 455 NT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred CC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence 32 22333 3344556788999999999999999888765
No 81
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.32 E-value=1.9e-09 Score=96.04 Aligned_cols=237 Identities=17% Similarity=0.129 Sum_probs=175.9
Q ss_pred ccchHHHHHHHhhcCcHHHHHHHHHHHHhc-----C-CCCCHH-hHHHHHHHHhhhccHHHHHHHHHHHHHc-----CCC
Q 047359 185 LSGNDYVIQKLSDMGKTYAAEMIFKRACDE-----K-IELQDD-TCGCMLKALSKEGRVKEAIQIYHLISER-----GIT 252 (440)
Q Consensus 185 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~ 252 (440)
..+...+...|...|+++.|+.+++...+. | ..|... ..+.+...|...+++++|..+|+++... |..
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 667777899999999999999999887654 2 122322 3344677888999999999999988653 211
Q ss_pred -C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHc-----C-CCCCh-hhHHHHHHHHHcCCCHHHHHHHHHHHHhc---C
Q 047359 253 -V-RDSDYYAFVNVLCKEHQPEEVCGLLRDVVER-----G-YIPCA-MELSRFVASQCGKGKWKEVEELLSAVLDK---G 320 (440)
Q Consensus 253 -~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~ 320 (440)
| -..+++.|..+|.+.|++++|...++...+- + ..|.+ ..++.+...++..+++++|..+++...+. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 1 2356677778899999999998888876531 1 11222 23556677788889999999999877542 1
Q ss_pred CCCc----hhhhHHHHHHHHcCCcHHHHHHHHHHHHhcc----C--Cc-CHHhHHHHHHHHHhcCcHHHHHHHHHHHH--
Q 047359 321 LLLD----SFCCSSLMEYYCSNRQIDKAIALHIKIEKLK----G--SL-DVATYDVLLDGLFKDGRMEEAVRIFDYMK-- 387 (440)
Q Consensus 321 ~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~--~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-- 387 (440)
+.++ ..+++.+...|...|++++|.+++++++... - .+ ....++.|...|.+.+++++|.++|.+..
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 2222 3578899999999999999999999987542 1 11 24567888899999999999999988654
Q ss_pred --HcCCC---chhhHHHHHHHHHhcccHHHHHHHHHHHH
Q 047359 388 --ELKVV---SSSSFVIVVSRLCHLKELRKAMKNHDEML 421 (440)
Q Consensus 388 --~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 421 (440)
..|+. ...+|..|+..|.+.|++++|.++.+...
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 45555 33578899999999999999999988876
No 82
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.32 E-value=4.4e-09 Score=81.06 Aligned_cols=199 Identities=13% Similarity=0.037 Sum_probs=108.9
Q ss_pred HHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 047359 189 DYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKE 268 (440)
Q Consensus 189 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 268 (440)
..+.-.|...|+...|..-+++..+.++. +..+|..+...|.+.|..+.|.+-|++.....+. +..+.|.....+|..
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~q 116 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHhC
Confidence 33445556666666666666666655443 4455666666666666666666666666555433 444555555556666
Q ss_pred CChHHHHHHHHHHHHcC-CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHH
Q 047359 269 HQPEEVCGLLRDVVERG-YIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIAL 347 (440)
Q Consensus 269 ~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 347 (440)
|++++|...|+.....- ...-..+|..+.-+..+.|+.+.|.+.|++..+.... .......+.......|++-.|..+
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHHH
Confidence 66666666666655431 1122334555555555556666666666665555433 334444555555555666666666
Q ss_pred HHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCC
Q 047359 348 HIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKV 391 (440)
Q Consensus 348 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 391 (440)
++.....+. ++..+.-..|..-.+.|+.+.+.+.=..+.+..|
T Consensus 196 ~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP 238 (250)
T COG3063 196 LERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFP 238 (250)
T ss_pred HHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 555555444 4555555555555555555555555444444433
No 83
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.31 E-value=4e-09 Score=89.95 Aligned_cols=227 Identities=9% Similarity=-0.061 Sum_probs=162.2
Q ss_pred cCcHHHHHHHHHHHHhcCC-CC--CHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHH
Q 047359 198 MGKTYAAEMIFKRACDEKI-EL--QDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEV 274 (440)
Q Consensus 198 ~~~~~~a~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 274 (440)
.+..+.++.-+.++..... .| ....|..+...+...|+.++|...|++..+..+. +...|+.+...+...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHH
Confidence 3466777777777775422 22 2456778888899999999999999999987654 678899999999999999999
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhc
Q 047359 275 CGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKL 354 (440)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 354 (440)
...++...+.. +.+...+..+...+...|++++|.+.++...+..+. ..........+...++.++|...+.+....
T Consensus 118 ~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~--~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 118 YEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPN--DPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 99999999864 334567788888888999999999999999886543 222222223345678899999999776543
Q ss_pred cCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHH-------HcCCCchhhHHHHHHHHHhcccHHHHHHHHHHHHHCCCCC
Q 047359 355 KGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMK-------ELKVVSSSSFVIVVSRLCHLKELRKAMKNHDEMLKMGHKP 427 (440)
Q Consensus 355 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p 427 (440)
..|+...+ .+ .....|+...+ +.++.+. +.++....+|..+...+.+.|++++|+..|++..+.+ .|
T Consensus 195 -~~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~ 268 (296)
T PRK11189 195 -LDKEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-VY 268 (296)
T ss_pred -CCccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-Cc
Confidence 23332222 22 23335555443 2444443 2223345689999999999999999999999999843 34
Q ss_pred CHHHHHH
Q 047359 428 DEATYKQ 434 (440)
Q Consensus 428 ~~~t~~~ 434 (440)
|.+-+..
T Consensus 269 ~~~e~~~ 275 (296)
T PRK11189 269 NFVEHRY 275 (296)
T ss_pred hHHHHHH
Confidence 6555544
No 84
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.27 E-value=1.7e-08 Score=77.87 Aligned_cols=209 Identities=12% Similarity=0.027 Sum_probs=172.9
Q ss_pred hHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 047359 222 TCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQC 301 (440)
Q Consensus 222 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 301 (440)
+..-+.-.|...|+...|..-+++..+.++. +..++..+...|.+.|..+.|.+-|+...+.. +-+..+.|....-+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 4455677899999999999999999998754 67889999999999999999999999998864 446677888888899
Q ss_pred cCCCHHHHHHHHHHHHhcCCC-CchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHH
Q 047359 302 GKGKWKEVEELLSAVLDKGLL-LDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAV 380 (440)
Q Consensus 302 ~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 380 (440)
..|++++|...|+.......- -...+|..+.-+..+.|+.+.|.+.|++..+.... ...+...+.....+.|++..|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHH
Confidence 999999999999999875222 23457888888888999999999999999987554 5567778889999999999999
Q ss_pred HHHHHHHHcCCCchhhHHHHHHHHHhcccHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 047359 381 RIFDYMKELKVVSSSSFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDEATYKQV 435 (440)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~l 435 (440)
..++.....+..+.......|+.-.+.|+-+.+-+.=..+.. .-|...-+-..
T Consensus 194 ~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r--~fP~s~e~q~f 246 (250)
T COG3063 194 LYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR--LFPYSEEYQTF 246 (250)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCcHHHHhH
Confidence 999999988888888888888888899998888776666665 45666655444
No 85
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.24 E-value=1.6e-07 Score=83.29 Aligned_cols=197 Identities=8% Similarity=-0.080 Sum_probs=90.0
Q ss_pred HHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCh--hhHHHHHHHHH
Q 047359 225 CMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGY-IPCA--MELSRFVASQC 301 (440)
Q Consensus 225 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~--~~~~~l~~~~~ 301 (440)
.+...+...|++++|...+++..+..+. +...+..+...+...|++++|...++....... .|+. ..|..+...+.
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~ 197 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYL 197 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHH
Confidence 3444555566666666666666554422 344455555566666666666666666554321 1111 12334555556
Q ss_pred cCCCHHHHHHHHHHHHhcCCC-Cchhhh-H--HHHHHHHcCCcHHHHHHH--HHHHHhccCC--cCHHhHHHHHHHHHhc
Q 047359 302 GKGKWKEVEELLSAVLDKGLL-LDSFCC-S--SLMEYYCSNRQIDKAIAL--HIKIEKLKGS--LDVATYDVLLDGLFKD 373 (440)
Q Consensus 302 ~~~~~~~a~~~~~~~~~~~~~-~~~~~~-~--~l~~~~~~~~~~~~a~~~--~~~~~~~~~~--p~~~~~~~l~~~~~~~ 373 (440)
..|++++|..++++....... +..... + .++.-+...|....+.+. +......... ...........++...
T Consensus 198 ~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 277 (355)
T cd05804 198 ERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGA 277 (355)
T ss_pred HCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcC
Confidence 666666666666665432211 111100 1 112222233322222221 1111000000 0111112345556666
Q ss_pred CcHHHHHHHHHHHHHcC-------CC--chhhHHHHHHHHHhcccHHHHHHHHHHHHH
Q 047359 374 GRMEEAVRIFDYMKELK-------VV--SSSSFVIVVSRLCHLKELRKAMKNHDEMLK 422 (440)
Q Consensus 374 g~~~~a~~~~~~~~~~~-------~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 422 (440)
|+.+.|..+++.+.... .. ..........++...|++++|.+.+.+.+.
T Consensus 278 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 278 GDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred CCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77777777776664321 11 122222333344567777777777776654
No 86
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.22 E-value=5.8e-10 Score=93.55 Aligned_cols=251 Identities=13% Similarity=0.050 Sum_probs=102.5
Q ss_pred HHhcCChhHHHHHHHHHhcCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCcccccchHHHHHHHhhcCcH
Q 047359 122 YSKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKT 201 (440)
Q Consensus 122 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 201 (440)
+.-.|++..++.-.+ ... ..-..+......+.+++...|+++.+. .++.+.. .|. ......+...+...++-
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~-~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~--l~av~~la~y~~~~~~~ 82 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKS-FSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPE--LQAVRLLAEYLSSPSDK 82 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHT-STCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCC--CHHHHHHHHHHCTSTTH
T ss_pred HHHhhhHHHHHHHhh-ccC-CCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-Chh--HHHHHHHHHHHhCccch
Confidence 344566666665444 222 111112334445556666666655332 2222222 333 33333333333332333
Q ss_pred HHHHHHHHHHHhcCCC-CCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 047359 202 YAAEMIFKRACDEKIE-LQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRD 280 (440)
Q Consensus 202 ~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 280 (440)
+.+..-++........ .+..........+...|++++|++++... .+.......+..+.+.++++.|.+.++.
T Consensus 83 e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~ 156 (290)
T PF04733_consen 83 ESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKN 156 (290)
T ss_dssp HCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3333333332222211 12222222223344456666665555431 2334444455555555555555555555
Q ss_pred HHHcCCCCChhhHHHHHHHHHc----CCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccC
Q 047359 281 VVERGYIPCAMELSRFVASQCG----KGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKG 356 (440)
Q Consensus 281 ~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 356 (440)
|.+.+ .| .+...+..++.. .+.+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++.+....+.
T Consensus 157 ~~~~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~ 232 (290)
T PF04733_consen 157 MQQID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP 232 (290)
T ss_dssp HHCCS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C
T ss_pred HHhcC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc
Confidence 55432 12 222223222222 22345555555554433 233444455555555555555555555555444332
Q ss_pred CcCHHhHHHHHHHHHhcCcH-HHHHHHHHHHHHcCC
Q 047359 357 SLDVATYDVLLDGLFKDGRM-EEAVRIFDYMKELKV 391 (440)
Q Consensus 357 ~p~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~ 391 (440)
. ++.+...++.+....|+. +.+.+.+.++....|
T Consensus 233 ~-~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p 267 (290)
T PF04733_consen 233 N-DPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNP 267 (290)
T ss_dssp C-HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTT
T ss_pred C-CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCC
Confidence 2 333444444444444444 444445555544433
No 87
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.19 E-value=3.9e-07 Score=74.74 Aligned_cols=263 Identities=16% Similarity=0.105 Sum_probs=128.2
Q ss_pred HHHhcCChhHHHHHHHHHhcCCCCCCchhhH-HHHHHHHHhcCChhhHHHHHHHHHhcCCCCccc------------ccc
Q 047359 121 FYSKKGDFGAAFDRLNEMCNGRNLTPGFSTY-SSILDGARRYEKTEVSDRIVGLMVEKKLLPKHF------------LSG 187 (440)
Q Consensus 121 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------------~~~ 187 (440)
.|...|+...|+.-+.+..+ ++||-..- ..-...+.+.|.++.|..=|+.+++........ ...
T Consensus 81 ~yLAmGksk~al~Dl~rVle---lKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~ 157 (504)
T KOG0624|consen 81 VYLAMGKSKAALQDLSRVLE---LKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWV 157 (504)
T ss_pred HHhhhcCCccchhhHHHHHh---cCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHH
Confidence 44555555555555555544 55553311 111223455666666666666655543111100 001
Q ss_pred hHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 047359 188 NDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCK 267 (440)
Q Consensus 188 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 267 (440)
....+..+...|+...|+.....+.+..+- |...+..-..+|...|++..|+.=++...+..-. +..++--+-..+..
T Consensus 158 l~~ql~s~~~~GD~~~ai~~i~~llEi~~W-da~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~ 235 (504)
T KOG0624|consen 158 LVQQLKSASGSGDCQNAIEMITHLLEIQPW-DASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYT 235 (504)
T ss_pred HHHHHHHHhcCCchhhHHHHHHHHHhcCcc-hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHh
Confidence 111233444556666666666666665433 5556666666666667766666655555443322 33444445555666
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhhHHHH-------------HHHHHcCCCHHHHHHHHHHHHhcCCCCchh---hhHHH
Q 047359 268 EHQPEEVCGLLRDVVERGYIPCAMELSRF-------------VASQCGKGKWKEVEELLSAVLDKGLLLDSF---CCSSL 331 (440)
Q Consensus 268 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l 331 (440)
.|+.+.++...++..+.+ ||...+-.. +......++|.++.+-.+...+..+..... .+..+
T Consensus 236 vgd~~~sL~~iRECLKld--pdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~ 313 (504)
T KOG0624|consen 236 VGDAENSLKEIRECLKLD--PDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVL 313 (504)
T ss_pred hhhHHHHHHHHHHHHccC--cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeehee
Confidence 666666666666666542 443322111 111222344444444444444433221111 12223
Q ss_pred HHHHHcCCcHHHHHHHHHHHHhccCCc-CHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCC
Q 047359 332 MEYYCSNRQIDKAIALHIKIEKLKGSL-DVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVV 392 (440)
Q Consensus 332 ~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 392 (440)
-.++...+++.+|++...++.+. .| |..++.--..+|.-...++.|+.-|+.+.+.+..
T Consensus 314 c~C~~~d~~~~eAiqqC~evL~~--d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~s 373 (504)
T KOG0624|consen 314 CTCYREDEQFGEAIQQCKEVLDI--DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNES 373 (504)
T ss_pred eecccccCCHHHHHHHHHHHHhc--CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcc
Confidence 33444555555555555555542 22 2445555555555555555555555555555444
No 88
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.16 E-value=1.1e-06 Score=72.24 Aligned_cols=298 Identities=15% Similarity=0.059 Sum_probs=202.5
Q ss_pred ChHhHHHHHHHHHhccchhHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCChHHHHHHHhccc---CCchh-HHHHHH
Q 047359 46 AVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPN-KFTWSLVAQILCRSGKFEVVLGLLDSGI---YSSVM-YNLVID 120 (440)
Q Consensus 46 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~-~~~li~ 120 (440)
++.-.--+...+...|++..|+.-|...++. .|+ -.++-.-...|...|+..-|+.=+.+.. ||-.. --.-..
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~--dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~ 114 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEG--DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGV 114 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC--CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhch
Confidence 3444445566677778888888888877764 233 2233334456777777777776666655 44322 222335
Q ss_pred HHHhcCChhHHHHHHHHHhcCCCCCCch----hh------------HHHHHHHHHhcCChhhHHHHHHHHHhcCCCCccc
Q 047359 121 FYSKKGDFGAAFDRLNEMCNGRNLTPGF----ST------------YSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHF 184 (440)
Q Consensus 121 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~----~~------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 184 (440)
.+.+.|.+++|..-|+.+.+ ..|+. .. ....+..+.-.|+...|+.....+++.. |..
T Consensus 115 vllK~Gele~A~~DF~~vl~---~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~--~Wd- 188 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQ---HEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ--PWD- 188 (504)
T ss_pred hhhhcccHHHHHHHHHHHHh---cCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC--cch-
Confidence 66788888888888888876 22211 11 1222334556788999999998888754 432
Q ss_pred ccchHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhh----HHH
Q 047359 185 LSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSD----YYA 260 (440)
Q Consensus 185 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~ 260 (440)
...+..-..+|...|++..|+.-++...+..-. +..++..+-..+...|+.+.++...++..+.+ ||... |..
T Consensus 189 a~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKld--pdHK~Cf~~YKk 265 (504)
T KOG0624|consen 189 ASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKLD--PDHKLCFPFYKK 265 (504)
T ss_pred hHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHccC--cchhhHHHHHHH
Confidence 677777889999999999999888887765544 55566667788888999999999988888764 33321 211
Q ss_pred H---------HHHHHhcCChHHHHHHHHHHHHcCCCCChh---hHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhh
Q 047359 261 F---------VNVLCKEHQPEEVCGLLRDVVERGYIPCAM---ELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCC 328 (440)
Q Consensus 261 l---------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 328 (440)
+ +......+++.++.+-.+...+........ .+..+-.++...+++.+|++.-.++++.... |..++
T Consensus 266 lkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~-dv~~l 344 (504)
T KOG0624|consen 266 LKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPD-DVQVL 344 (504)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCch-HHHHH
Confidence 1 122345677888888888887764332222 3344555666779999999999999886433 57888
Q ss_pred HHHHHHHHcCCcHHHHHHHHHHHHhcc
Q 047359 329 SSLMEYYCSNRQIDKAIALHIKIEKLK 355 (440)
Q Consensus 329 ~~l~~~~~~~~~~~~a~~~~~~~~~~~ 355 (440)
..-..+|.-...++.|+.-|+...+.+
T Consensus 345 ~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 345 CDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 888889999999999999999998854
No 89
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.16 E-value=3.9e-07 Score=73.24 Aligned_cols=397 Identities=10% Similarity=0.043 Sum_probs=242.3
Q ss_pred CCCCChHhHHHHHHHHHccCCcchHHHHHHHHHhcCCccChHhHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHH
Q 047359 7 GRDSQSDALSLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWS 86 (440)
Q Consensus 7 g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 86 (440)
|+..-..-+.+++..+.+..++++|++++..-.++. +.+......+..+|....++..|-..++++-.. .|...-|.
T Consensus 5 g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYr 81 (459)
T KOG4340|consen 5 GAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYR 81 (459)
T ss_pred cccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHH
Confidence 444444456778888889999999999999888875 337777888888899999999999999999775 45554443
Q ss_pred H-HHHHHHhcCChHHHHHHHhcccCCchhHHHHH----HHHHhcCChhHHHHHHHHHhcCCCCCCchhhHHHHHHHHHhc
Q 047359 87 L-VAQILCRSGKFEVVLGLLDSGIYSSVMYNLVI----DFYSKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDGARRY 161 (440)
Q Consensus 87 ~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~li----~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 161 (440)
. -.+.+-+.+.+..|+.+...|..+....+..+ ......+++..+..++++... . .+..+.+...-...+.
T Consensus 82 lY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~-e---n~Ad~~in~gCllyke 157 (459)
T KOG4340|consen 82 LYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS-E---NEADGQINLGCLLYKE 157 (459)
T ss_pred HHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccC-C---Cccchhccchheeecc
Confidence 2 34566678889999999888874333332222 223456888888888888743 1 2333444444455688
Q ss_pred CChhhHHHHHHHHHhc-CCCCcccccchHHHHHHHhhcCcHHHHHHHHHHHHhcCCC-------------CCHH------
Q 047359 162 EKTEVSDRIVGLMVEK-KLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIE-------------LQDD------ 221 (440)
Q Consensus 162 ~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-------------~~~~------ 221 (440)
|+++.|.+-|+...+. |..| ...|+ +.-++.+.|+.+.|.+...++.++|++ ||+.
T Consensus 158 gqyEaAvqkFqaAlqvsGyqp---llAYn-iALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~ 233 (459)
T KOG4340|consen 158 GQYEAAVQKFQAALQVSGYQP---LLAYN-LALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTL 233 (459)
T ss_pred ccHHHHHHHHHHHHhhcCCCc---hhHHH-HHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchH
Confidence 9999999999988875 4444 55665 445566788999999999998887643 1211
Q ss_pred ---------hHHHHHHHHhhhccHHHHHHHHHHHHHc-CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh
Q 047359 222 ---------TCGCMLKALSKEGRVKEAIQIYHLISER-GITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAM 291 (440)
Q Consensus 222 ---------~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 291 (440)
.+|.-...+.+.|+++.|.+.+.+|..+ ....|+.|...+.-.= ..+++.+...-+.-+.+.+. -...
T Consensus 234 ~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~E 311 (459)
T KOG4340|consen 234 VLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPE 311 (459)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChH
Confidence 1222223345678888888888888644 2334556655443222 23556666666666666543 3456
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHhcCCC-CchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHH
Q 047359 292 ELSRFVASQCGKGKWKEVEELLSAVLDKGLL-LDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGL 370 (440)
Q Consensus 292 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 370 (440)
||..++-.||++.-++.|-.++.+-...... .+...|+.+=..-...-..++|.+-++.+.+.- ....-..-+..-
T Consensus 312 TFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~~l---~~kLRklAi~vQ 388 (459)
T KOG4340|consen 312 TFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAGML---TEKLRKLAIQVQ 388 (459)
T ss_pred HHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 8888888999998888888887643322111 123333333222233445666666555444320 000001111110
Q ss_pred -HhcCcHH----HHHHHHHHHHHcCCCchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Q 047359 371 -FKDGRME----EAVRIFDYMKELKVVSSSSFVIVVSRLCHLKELRKAMKNHDEMLK 422 (440)
Q Consensus 371 -~~~g~~~----~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 422 (440)
.+..+-+ .|++-+++..+. -..+...-.+.|.+..++..+.++|..-.+
T Consensus 389 e~r~~~dd~a~R~ai~~Yd~~LE~---YLPVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 389 EARHNRDDEAIRKAVNEYDETLEK---YLPVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 1111111 122222322222 122333344556778899999999988766
No 90
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.16 E-value=7.9e-09 Score=86.78 Aligned_cols=81 Identities=12% Similarity=0.068 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcccH-HHHHHHHHH
Q 047359 341 IDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLKEL-RKAMKNHDE 419 (440)
Q Consensus 341 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~ 419 (440)
+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++.+..+.++.++.+...++.+....|+. +.+.+.+.+
T Consensus 183 ~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 183 YQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp CCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 44455555554332 2334444444444444555555555555444444444444444444444444444 333344444
Q ss_pred HHH
Q 047359 420 MLK 422 (440)
Q Consensus 420 m~~ 422 (440)
+..
T Consensus 262 L~~ 264 (290)
T PF04733_consen 262 LKQ 264 (290)
T ss_dssp CHH
T ss_pred HHH
Confidence 443
No 91
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.14 E-value=7.6e-07 Score=79.01 Aligned_cols=197 Identities=9% Similarity=-0.095 Sum_probs=100.8
Q ss_pred hHhHHHHHHHHHccCCcchHHHHHHHHHhcCC-ccChH-hHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHH--
Q 047359 12 SDALSLVLDCYSHKGLFMDGLEVYRMMRVYGF-VPAVS-ACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSL-- 87 (440)
Q Consensus 12 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-- 87 (440)
...|..+...+...|+.+.+.+.+....+... .++.. ........+...|++++|.+.+++..+.. +.+...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~ 84 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHL 84 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhH
Confidence 34555566666677888887777777665432 11211 12222334566788999999998887753 223333332
Q ss_pred -HHHHHHhcCChHHHHHHHhccc---CCc-hhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCc-hhhHHHHHHHHHhc
Q 047359 88 -VAQILCRSGKFEVVLGLLDSGI---YSS-VMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPG-FSTYSSILDGARRY 161 (440)
Q Consensus 88 -l~~~~~~~~~~~~a~~~~~~~~---~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 161 (440)
........+..+.+.+.++... |+. .....+...+...|++++|...+++..+ ..|+ ...+..+..++...
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~---~~p~~~~~~~~la~i~~~~ 161 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALE---LNPDDAWAVHAVAHVLEMQ 161 (355)
T ss_pred HHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCcHHHHHHHHHHHHc
Confidence 1111122344444444444322 211 2223344455666666666666666654 2333 33445555566666
Q ss_pred CChhhHHHHHHHHHhcCCC-CcccccchHHHHHHHhhcCcHHHHHHHHHHHH
Q 047359 162 EKTEVSDRIVGLMVEKKLL-PKHFLSGNDYVIQKLSDMGKTYAAEMIFKRAC 212 (440)
Q Consensus 162 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 212 (440)
|++++|...+++....... |......|..+...+...|++++|..++++..
T Consensus 162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 6666666666665543211 11001123345555555566666666665553
No 92
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.13 E-value=1.4e-06 Score=87.58 Aligned_cols=333 Identities=11% Similarity=0.007 Sum_probs=210.7
Q ss_pred HHHhcCChHHHHHHHhccc-----CCchhHHHHHHHHHhcCChhHHHHHHHHHhcCCCC-----CCchh--hHHHHHHHH
Q 047359 91 ILCRSGKFEVVLGLLDSGI-----YSSVMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNL-----TPGFS--TYSSILDGA 158 (440)
Q Consensus 91 ~~~~~~~~~~a~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-----~p~~~--~~~~l~~~~ 158 (440)
.....|+.+.+...++.+. .+..........+...|++++|...+........- .+... ....+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 3445677787777777764 22333344455567789999999988877541111 11111 122233455
Q ss_pred HhcCChhhHHHHHHHHHhcCCCCcc--cccchHHHHHHHhhcCcHHHHHHHHHHHHhcCCC-----CCHHhHHHHHHHHh
Q 047359 159 RRYEKTEVSDRIVGLMVEKKLLPKH--FLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIE-----LQDDTCGCMLKALS 231 (440)
Q Consensus 159 ~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~ 231 (440)
...|+++.|...++.........+. .......+...+...|+++.|...+.+....... .....+..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 6789999999999988763211110 0123455667778899999999999887643111 11234455667788
Q ss_pred hhccHHHHHHHHHHHHHc----CCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCC--ChhhHHHHHHHH
Q 047359 232 KEGRVKEAIQIYHLISER----GIT--V-RDSDYYAFVNVLCKEHQPEEVCGLLRDVVERG--YIP--CAMELSRFVASQ 300 (440)
Q Consensus 232 ~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~~~ 300 (440)
..|+++.|...+++.... +.. + ....+..+...+...|++++|...+....... ..+ ....+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 899999999998876543 211 1 12334455566777899999999988875431 112 223444456677
Q ss_pred HcCCCHHHHHHHHHHHHhcCCCCc-hhhh-----HHHHHHHHcCCcHHHHHHHHHHHHhccCCcC---HHhHHHHHHHHH
Q 047359 301 CGKGKWKEVEELLSAVLDKGLLLD-SFCC-----SSLMEYYCSNRQIDKAIALHIKIEKLKGSLD---VATYDVLLDGLF 371 (440)
Q Consensus 301 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~---~~~~~~l~~~~~ 371 (440)
...|+++.|...+........... ...+ ...+..+...|+.+.|.+.+........... ...+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 788999999999988754311111 1111 1122445568899999998777654221111 112345677788
Q ss_pred hcCcHHHHHHHHHHHHHc----CCC--chhhHHHHHHHHHhcccHHHHHHHHHHHHHC
Q 047359 372 KDGRMEEAVRIFDYMKEL----KVV--SSSSFVIVVSRLCHLKELRKAMKNHDEMLKM 423 (440)
Q Consensus 372 ~~g~~~~a~~~~~~~~~~----~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 423 (440)
..|+.++|...++++... +.. ...+...+..++.+.|+.++|...+.+..+.
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999987653 222 3346667788888999999999999998874
No 93
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.11 E-value=1e-07 Score=76.46 Aligned_cols=195 Identities=17% Similarity=0.072 Sum_probs=124.2
Q ss_pred hHhHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhccc---CCchhHHH-HHHHH
Q 047359 47 VSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSGKFEVVLGLLDSGI---YSSVMYNL-VIDFY 122 (440)
Q Consensus 47 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~-li~~~ 122 (440)
..-+.+.+..+.+..+++.|++++..-.+.. +.+......|..+|-+..++..|-..++++. |...-|.. -...+
T Consensus 10 EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 10 EGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSL 88 (459)
T ss_pred CCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHH
Confidence 3346677777788888888888888776653 2255566777777888888888888888776 55444433 24556
Q ss_pred HhcCChhHHHHHHHHHhcCCCCCCchhhHHHHHHH--HHhcCChhhHHHHHHHHHhcCCCCcccccchHHHHHHHhhcCc
Q 047359 123 SKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDG--ARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGK 200 (440)
Q Consensus 123 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 200 (440)
.+.+.+..|+++...|.. .|+...-..-+.+ ....+++..+..++++....| + ..+.+...-...+.|+
T Consensus 89 Y~A~i~ADALrV~~~~~D----~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~--Ad~~in~gCllykegq 159 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLD----NPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---E--ADGQINLGCLLYKEGQ 159 (459)
T ss_pred HHhcccHHHHHHHHHhcC----CHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---c--cchhccchheeecccc
Confidence 677888888888887754 1222222222222 234567777777776654322 1 3444445555667788
Q ss_pred HHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCC
Q 047359 201 TYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGIT 252 (440)
Q Consensus 201 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 252 (440)
++.|.+-|+...+-+--.....|+..+ +..+.|+++.|++...++.++|++
T Consensus 160 yEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 160 YEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIR 210 (459)
T ss_pred HHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhh
Confidence 888888887776643332344565443 455667888888888888877765
No 94
>PLN02789 farnesyltranstransferase
Probab=99.07 E-value=3.3e-07 Score=78.16 Aligned_cols=226 Identities=10% Similarity=-0.014 Sum_probs=111.9
Q ss_pred cHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhc-cHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh--HHHHH
Q 047359 200 KTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEG-RVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQP--EEVCG 276 (440)
Q Consensus 200 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~a~~ 276 (440)
..++|+....++.+.++. +..+|+..-.++...| ++++++..++++.+.+.+ +..+|+.....+.+.|+. +++..
T Consensus 52 ~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~~el~ 129 (320)
T PLN02789 52 RSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAANKELE 129 (320)
T ss_pred CCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhHHHHH
Confidence 344444444444443332 2333333333333334 345555555555554433 333344333333333332 34455
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcC---Cc----HHHHHHHHH
Q 047359 277 LLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSN---RQ----IDKAIALHI 349 (440)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~----~~~a~~~~~ 349 (440)
+++.+.+.+ +-+..+|+.....+...|+++++++.++++.+.++. |...|+.....+.+. |. .++.++...
T Consensus 130 ~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~ 207 (320)
T PLN02789 130 FTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKYTI 207 (320)
T ss_pred HHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHHHHH
Confidence 555555443 234445555555555555566666666666555444 444444444333332 11 234555555
Q ss_pred HHHhccCCcCHHhHHHHHHHHHhc----CcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcc-----------------
Q 047359 350 KIEKLKGSLDVATYDVLLDGLFKD----GRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLK----------------- 408 (440)
Q Consensus 350 ~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----------------- 408 (440)
+++...+. |...|+.+...+... ++..+|.+++.+..+.++.+..+...|+..|....
T Consensus 208 ~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~ 286 (320)
T PLN02789 208 DAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEEL 286 (320)
T ss_pred HHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhcccccc
Confidence 55554433 555666666655552 33455666666666655556666666766666422
Q ss_pred -cHHHHHHHHHHHHHCCCCCCHHHH
Q 047359 409 -ELRKAMKNHDEMLKMGHKPDEATY 432 (440)
Q Consensus 409 -~~~~a~~~~~~m~~~~~~p~~~t~ 432 (440)
..++|.++++.+.+ ..|=..-|
T Consensus 287 ~~~~~a~~~~~~l~~--~d~ir~~y 309 (320)
T PLN02789 287 SDSTLAQAVCSELEV--ADPMRRNY 309 (320)
T ss_pred ccHHHHHHHHHHHHh--hCcHHHHH
Confidence 34678888888732 44543333
No 95
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.05 E-value=8.3e-06 Score=71.27 Aligned_cols=406 Identities=12% Similarity=0.077 Sum_probs=242.8
Q ss_pred CCCChHhHHHHHHHHHccCCcchHHHHHHHHHhcCCccChHhHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHH
Q 047359 8 RDSQSDALSLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSL 87 (440)
Q Consensus 8 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 87 (440)
-+-|..+|+.||+-+..+ .++++.+.++++...- +-....|..-|..-.+.++++..+++|.+.+..- .+...|..
T Consensus 16 nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~F-P~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~l 91 (656)
T KOG1914|consen 16 NPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVF-PSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKL 91 (656)
T ss_pred CCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccC-CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHH
Confidence 356889999999988666 8999999999998753 4567889999999999999999999999987753 45666766
Q ss_pred HHHHHHhc-CChHHH----HHHHhccc-------CCchhHHHHHHH---------HHhcCChhHHHHHHHHHhcCCCCCC
Q 047359 88 VAQILCRS-GKFEVV----LGLLDSGI-------YSSVMYNLVIDF---------YSKKGDFGAAFDRLNEMCNGRNLTP 146 (440)
Q Consensus 88 l~~~~~~~-~~~~~a----~~~~~~~~-------~~~~~~~~li~~---------~~~~~~~~~a~~~~~~~~~~~~~~p 146 (440)
-+.--.+. |+...+ .+.|+-.. .+...|+..+.. +..+.+++...++|.++.. ..+.-
T Consensus 92 Yl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~-tPm~n 170 (656)
T KOG1914|consen 92 YLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALV-TPMHN 170 (656)
T ss_pred HHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhc-Ccccc
Confidence 66543332 333321 11222111 344446555543 3344566777888888865 22111
Q ss_pred chhhHH------HHHHH-------HHhcCChhhHHHHHHHHHh--cCCCCccc----ccc---------hHHHHHHHhhc
Q 047359 147 GFSTYS------SILDG-------ARRYEKTEVSDRIVGLMVE--KKLLPKHF----LSG---------NDYVIQKLSDM 198 (440)
Q Consensus 147 ~~~~~~------~l~~~-------~~~~~~~~~a~~~~~~~~~--~~~~~~~~----~~~---------~~~l~~~~~~~ 198 (440)
=...|+ .-+.. --+...+..|.++++++.. .|+..... ..| |-.+|..-...
T Consensus 171 lEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksN 250 (656)
T KOG1914|consen 171 LEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSN 250 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcC
Confidence 011221 11111 1123445667777776654 23211100 111 22222221111
Q ss_pred CcH--------HHHHHHHHHH-HhcCCCCCHHhHHHHH-------HHHhhhcc-------HHHHHHHHHHHHHcCCCCCh
Q 047359 199 GKT--------YAAEMIFKRA-CDEKIELQDDTCGCML-------KALSKEGR-------VKEAIQIYHLISERGITVRD 255 (440)
Q Consensus 199 ~~~--------~~a~~~~~~~-~~~~~~~~~~~~~~l~-------~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~ 255 (440)
+-- ....-.+++. .-.+..|+ +|.-.. +.+...|+ -+++..+++.....-...+.
T Consensus 251 pL~t~~~~~~~~Rv~yayeQ~ll~l~~~pe--iWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~ 328 (656)
T KOG1914|consen 251 PLRTLDGTMLTRRVMYAYEQCLLYLGYHPE--IWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENK 328 (656)
T ss_pred CcccccccHHHHHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 100 0011111111 11112222 121111 11222233 34556666665554333333
Q ss_pred hhHHHHHHHHHhcC---ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCC-chhhhHHH
Q 047359 256 SDYYAFVNVLCKEH---QPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLL-DSFCCSSL 331 (440)
Q Consensus 256 ~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l 331 (440)
.+|..+...--..- ..+....+++++.......-..+|..+++.-.+...+..|..+|.+..+.+..+ ++...+++
T Consensus 329 ~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~ 408 (656)
T KOG1914|consen 329 LLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAAL 408 (656)
T ss_pred HHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHH
Confidence 44443333221111 355666677776654333334567788888888889999999999999887776 67778888
Q ss_pred HHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCC---chhhHHHHHHHHHhcc
Q 047359 332 MEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVV---SSSSFVIVVSRLCHLK 408 (440)
Q Consensus 332 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g 408 (440)
+..|+ .++.+-|.++|+--.+. ..-++.-....+.-+...++-..+..+|++....+.. ....|..++..-..-|
T Consensus 409 mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vG 486 (656)
T KOG1914|consen 409 MEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVG 486 (656)
T ss_pred HHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcc
Confidence 87766 46889999999987765 2224445567788888999999999999999988433 5679999999999999
Q ss_pred cHHHHHHHHHHHHH
Q 047359 409 ELRKAMKNHDEMLK 422 (440)
Q Consensus 409 ~~~~a~~~~~~m~~ 422 (440)
+...+.++-+++..
T Consensus 487 dL~si~~lekR~~~ 500 (656)
T KOG1914|consen 487 DLNSILKLEKRRFT 500 (656)
T ss_pred cHHHHHHHHHHHHH
Confidence 99999999887765
No 96
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.05 E-value=4.4e-07 Score=82.88 Aligned_cols=322 Identities=11% Similarity=0.045 Sum_probs=185.1
Q ss_pred ChHhHHHHH--HHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhccc------------CC
Q 047359 46 AVSACNALL--DALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSGKFEVVLGLLDSGI------------YS 111 (440)
Q Consensus 46 ~~~~~~~ll--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~------------~~ 111 (440)
|..|-..++ +.|...|+.+.|.+-.+.+. +..+|..+.++|.+..++|-|.-.+..|. .+
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 444555555 33556688888877776654 34578888888888888888877776665 11
Q ss_pred c-hhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCcccccchHH
Q 047359 112 S-VMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDY 190 (440)
Q Consensus 112 ~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 190 (440)
. ..-....-...+.|.+++|..+|.+-+. |..|=..|...|.|++|.++-+.--... . ..+|..
T Consensus 799 ~~e~eakvAvLAieLgMlEeA~~lYr~ckR----------~DLlNKlyQs~g~w~eA~eiAE~~DRiH--L---r~Tyy~ 863 (1416)
T KOG3617|consen 799 GEEDEAKVAVLAIELGMLEEALILYRQCKR----------YDLLNKLYQSQGMWSEAFEIAETKDRIH--L---RNTYYN 863 (1416)
T ss_pred CcchhhHHHHHHHHHhhHHHHHHHHHHHHH----------HHHHHHHHHhcccHHHHHHHHhhcccee--h---hhhHHH
Confidence 1 2222222334567888888888888765 3344455666788888887765432221 1 456777
Q ss_pred HHHHHhhcCcHHHHHHHHHHHHhcC-------------------CCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCC
Q 047359 191 VIQKLSDMGKTYAAEMIFKRACDEK-------------------IELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGI 251 (440)
Q Consensus 191 l~~~~~~~~~~~~a~~~~~~~~~~~-------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 251 (440)
-...+...+|.+.|++.|++..... -..|...|.-....+-..|+.+.|+.+|.....
T Consensus 864 yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D--- 940 (1416)
T KOG3617|consen 864 YAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD--- 940 (1416)
T ss_pred HHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---
Confidence 7777778888888888877543211 011333344444444455666666666655443
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHH
Q 047359 252 TVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSL 331 (440)
Q Consensus 252 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 331 (440)
|-+++...|-.|+.++|-.+-++- -|.....-+.+.|-..|++.+|...|.+... +...
T Consensus 941 ------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnA 999 (1416)
T KOG3617|consen 941 ------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNA 999 (1416)
T ss_pred ------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHH
Confidence 444555556666666666655442 2344455566677777777777777765542 2222
Q ss_pred HHHHHcCC---------------cHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHH--------HH--
Q 047359 332 MEYYCSNR---------------QIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFD--------YM-- 386 (440)
Q Consensus 332 ~~~~~~~~---------------~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~--------~~-- 386 (440)
|+.|-..+ +.-.|-++|++. |.. +..-+..|-+.|.+..|+++-- ++
T Consensus 1000 IRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~---g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa 1071 (1416)
T KOG3617|consen 1000 IRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL---GGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIA 1071 (1416)
T ss_pred HHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc---chh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHH
Confidence 22222111 122222222221 111 1122345667777777666421 11
Q ss_pred HHcCCC-chhhHHHHHHHHHhcccHHHHHHHHHHH
Q 047359 387 KELKVV-SSSSFVIVVSRLCHLKELRKAMKNHDEM 420 (440)
Q Consensus 387 ~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m 420 (440)
.+.++. |+...+.....+....++++|..++-..
T Consensus 1072 ~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~a 1106 (1416)
T KOG3617|consen 1072 KDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLA 1106 (1416)
T ss_pred HhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 244555 7888888888888888888888776543
No 97
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=3.4e-07 Score=79.55 Aligned_cols=340 Identities=14% Similarity=0.067 Sum_probs=199.0
Q ss_pred HHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhccc---CCc-hhHHHHHHHHHhcCChhH
Q 047359 55 DALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSGKFEVVLGLLDSGI---YSS-VMYNLVIDFYSKKGDFGA 130 (440)
Q Consensus 55 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~-~~~~~li~~~~~~~~~~~ 130 (440)
.+....|+++.|...|.+.+... ++|...|..-..+|+..|++++|++=-.+-. |+- ..|+-...++.-.|++++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHH
Confidence 34556788889999888887765 3477778888888888888888876555444 443 357888888888888888
Q ss_pred HHHHHHHHhcCCCCCCc-hhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCcccccchHH-----HHHHHhhcCcHHHH
Q 047359 131 AFDRLNEMCNGRNLTPG-FSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDY-----VIQKLSDMGKTYAA 204 (440)
Q Consensus 131 a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-----l~~~~~~~~~~~~a 204 (440)
|+.-|.+-.+ ..|+ ...++.+..++. .+.+. .+.. -. +..+.. +.+.+...-.+..-
T Consensus 89 A~~ay~~GL~---~d~~n~~L~~gl~~a~~----~~~~~---~~~~---~~----p~~~~~l~~~p~t~~~~~~~~~~~~ 151 (539)
T KOG0548|consen 89 AILAYSEGLE---KDPSNKQLKTGLAQAYL----EDYAA---DQLF---TK----PYFHEKLANLPLTNYSLSDPAYVKI 151 (539)
T ss_pred HHHHHHHHhh---cCCchHHHHHhHHHhhh----HHHHh---hhhc---cC----cHHHHHhhcChhhhhhhccHHHHHH
Confidence 8888888765 4454 345555555541 11111 0000 00 111111 11111111111111
Q ss_pred HHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHH-----HHHc-------CCCC-------------------
Q 047359 205 EMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHL-----ISER-------GITV------------------- 253 (440)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-----~~~~-------~~~~------------------- 253 (440)
++.+.. + |+ . +..|..-.++..+...+.. +... +..|
T Consensus 152 l~~~~~----~--p~--~----l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~ 219 (539)
T KOG0548|consen 152 LEIIQK----N--PT--S----LKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERR 219 (539)
T ss_pred HHHhhc----C--cH--h----hhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHH
Confidence 111111 1 00 0 0001000001111110000 0000 0000
Q ss_pred ---ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHH
Q 047359 254 ---RDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSS 330 (440)
Q Consensus 254 ---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 330 (440)
-..-...+.++..+..+++.+.+.+....+.. .+..-++....+|...|.+.++...-....+.|-. ...-|+.
T Consensus 220 ~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~kl 296 (539)
T KOG0548|consen 220 VKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKL 296 (539)
T ss_pred HHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHH
Confidence 01123456666677778888888888877764 45555667777788888877777776666555432 2222332
Q ss_pred -------HHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhH-------------------------HHHHHHHHhcCcHHH
Q 047359 331 -------LMEYYCSNRQIDKAIALHIKIEKLKGSLDVATY-------------------------DVLLDGLFKDGRMEE 378 (440)
Q Consensus 331 -------l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~-------------------------~~l~~~~~~~g~~~~ 378 (440)
+..+|.+.++++.|+..|.+.......|+...- ..=...+.+.|++..
T Consensus 297 Iak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~ 376 (539)
T KOG0548|consen 297 IAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPE 376 (539)
T ss_pred HHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHH
Confidence 233556667788888888776654333332211 112446778899999
Q ss_pred HHHHHHHHHHcCCCchhhHHHHHHHHHhcccHHHHHHHHHHHHHCCCCCCH
Q 047359 379 AVRIFDYMKELKVVSSSSFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDE 429 (440)
Q Consensus 379 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 429 (440)
|++.+.+++..+|.|+..|.....+|.+.|.+..|+.-.+...+ +.|+.
T Consensus 377 Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ie--L~p~~ 425 (539)
T KOG0548|consen 377 AVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIE--LDPNF 425 (539)
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCchH
Confidence 99999999999988999999999999999999999998888877 45654
No 98
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.04 E-value=3.9e-08 Score=85.95 Aligned_cols=226 Identities=15% Similarity=0.075 Sum_probs=173.3
Q ss_pred HHHHhhcCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh
Q 047359 192 IQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQP 271 (440)
Q Consensus 192 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 271 (440)
..-+.+.|++.+|.-.|+...+.++. +...|..|.......++-..|+..+++..+..+. +......|.-.|...|.-
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhH
Confidence 44567788899999999998888776 7788888888888888888999999998887654 667777888888888888
Q ss_pred HHHHHHHHHHHHcCCCC--------ChhhHHHHHHHHHcCCCHHHHHHHHHHH-HhcCCCCchhhhHHHHHHHHcCCcHH
Q 047359 272 EEVCGLLRDVVERGYIP--------CAMELSRFVASQCGKGKWKEVEELLSAV-LDKGLLLDSFCCSSLMEYYCSNRQID 342 (440)
Q Consensus 272 ~~a~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~ 342 (440)
.+|++.++.-+....+- +...-.. ..+.....+....++|-++ ...+..+|+.....|.-.|--.|+++
T Consensus 370 ~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred HHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 88998888876543110 0000000 1111222334455555555 44454467777888888889999999
Q ss_pred HHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Q 047359 343 KAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLKELRKAMKNHDEMLK 422 (440)
Q Consensus 343 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 422 (440)
+|...|+.++...+. |..+||.|...++...+.++|+..|.++.+..|.-..+...|.-.|...|.+++|.+.|-+.+.
T Consensus 448 raiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 448 RAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 999999999986544 6779999999999999999999999999999888888888899999999999999998877654
No 99
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.03 E-value=2.4e-07 Score=83.42 Aligned_cols=216 Identities=14% Similarity=0.081 Sum_probs=178.3
Q ss_pred chHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 047359 187 GNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLC 266 (440)
Q Consensus 187 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 266 (440)
.-..+...+...|-...|..+++++. .|..++.+|...|+..+|..+..+..++ +|+...|..+.+...
T Consensus 400 ~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLH 468 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhcc
Confidence 33557788889999999999998764 5777899999999999999999888873 578889999998888
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHH
Q 047359 267 KEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIA 346 (440)
Q Consensus 267 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 346 (440)
...-+++|.++.+..... .-..+.......++++++.+.|+.-.+..+- ...+|-.+..+..+.++++.|.+
T Consensus 469 d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~ALqlek~q~av~ 540 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPL-QLGTWFGLGCAALQLEKEQAAVK 540 (777)
T ss_pred ChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCcc-chhHHHhccHHHHHHhhhHHHHH
Confidence 888888999888876543 1122222233468999999999988776433 56678778888889999999999
Q ss_pred HHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Q 047359 347 LHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLKELRKAMKNHDEMLK 422 (440)
Q Consensus 347 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 422 (440)
.|.......+. +...||.+-.+|.+.|+-.+|...+.+..+.+..++.+|...+......|.+++|++.+.++.+
T Consensus 541 aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 541 AFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 99999885433 5679999999999999999999999999999866999999999999999999999999999876
No 100
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.02 E-value=1e-07 Score=75.64 Aligned_cols=118 Identities=16% Similarity=0.213 Sum_probs=70.6
Q ss_pred CCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHH-HhcCc--HHHH
Q 047359 303 KGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGL-FKDGR--MEEA 379 (440)
Q Consensus 303 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~--~~~a 379 (440)
.++.+++...++......+. +...|..+...|...|++++|...+++..+.... +...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHH
Confidence 34455555555555554433 5556666666666666666666666666665433 455555555542 45455 3666
Q ss_pred HHHHHHHHHcCCCchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Q 047359 380 VRIFDYMKELKVVSSSSFVIVVSRLCHLKELRKAMKNHDEMLK 422 (440)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 422 (440)
.+++++..+.+|.++.++..+...+.+.|++++|+..|+++++
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6666666666666666666666666666666666666666665
No 101
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.02 E-value=1.3e-05 Score=70.92 Aligned_cols=161 Identities=16% Similarity=0.139 Sum_probs=107.1
Q ss_pred hHHHHHHHHH--hcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHH--------HHHhcCCCCchh
Q 047359 257 DYYAFVNVLC--KEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLS--------AVLDKGLLLDSF 326 (440)
Q Consensus 257 ~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~ 326 (440)
.+..++..+. +...+.++.+++...-+....-.....-..+......|+++.|.+++. .+.+.+-.| .
T Consensus 341 ~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P--~ 418 (652)
T KOG2376|consen 341 LFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP--G 418 (652)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh--h
Confidence 3444444432 223567777777777665322223445556677778899999999999 555544444 4
Q ss_pred hhHHHHHHHHcCCcHHHHHHHHHHHHhc--cCCcCHH----hHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHH
Q 047359 327 CCSSLMEYYCSNRQIDKAIALHIKIEKL--KGSLDVA----TYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIV 400 (440)
Q Consensus 327 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~p~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 400 (440)
+...+...+.+.++.+.|..++.+.++. .-.+... ++.-+...-.+.|+.++|..+++++.+.++.+..+...+
T Consensus 419 ~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~l 498 (652)
T KOG2376|consen 419 TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQL 498 (652)
T ss_pred HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHH
Confidence 4556777788888877777777776642 0011222 333344445578999999999999999999999999999
Q ss_pred HHHHHhcccHHHHHHHHHHH
Q 047359 401 VSRLCHLKELRKAMKNHDEM 420 (440)
Q Consensus 401 ~~~~~~~g~~~~a~~~~~~m 420 (440)
+.+|++. +.+.|..+-+.+
T Consensus 499 V~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 499 VTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHHhc-CHHHHHHHhhcC
Confidence 9999876 456776665543
No 102
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.02 E-value=2.9e-06 Score=85.32 Aligned_cols=336 Identities=13% Similarity=-0.056 Sum_probs=210.8
Q ss_pred HHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhccc---C--C---c-----hhHHHHHHHH
Q 047359 56 ALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSGKFEVVLGLLDSGI---Y--S---S-----VMYNLVIDFY 122 (440)
Q Consensus 56 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~--~---~-----~~~~~li~~~ 122 (440)
.....|+++.+..+++.+.......+..........+...|+++++...++... + + . .....+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 344567777777777665222111223333445556677899999988887653 1 1 1 1122233456
Q ss_pred HhcCChhHHHHHHHHHhcCCCCCCch----hhHHHHHHHHHhcCChhhHHHHHHHHHhcCC---CCcccccchHHHHHHH
Q 047359 123 SKKGDFGAAFDRLNEMCNGRNLTPGF----STYSSILDGARRYEKTEVSDRIVGLMVEKKL---LPKHFLSGNDYVIQKL 195 (440)
Q Consensus 123 ~~~~~~~~a~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~~~l~~~~ 195 (440)
...|++++|...+++... .....+. ...+.+...+...|+++.|...+++...... .+.........+...+
T Consensus 463 ~~~g~~~~A~~~~~~al~-~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 463 INDGDPEEAERLAELALA-ELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HhCCCHHHHHHHHHHHHh-cCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 678999999999998765 2111111 2345556667789999999999988875321 1110123445667788
Q ss_pred hhcCcHHHHHHHHHHHHhc----CCC--C-CHHhHHHHHHHHhhhccHHHHHHHHHHHHHc----CCCCChhhHHHHHHH
Q 047359 196 SDMGKTYAAEMIFKRACDE----KIE--L-QDDTCGCMLKALSKEGRVKEAIQIYHLISER----GITVRDSDYYAFVNV 264 (440)
Q Consensus 196 ~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~ 264 (440)
...|+++.|...+++.... +.. + ....+..+...+...|++++|...+.+.... +.......+..+...
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 8999999999998876552 211 1 2233445566677789999999998887553 211123344456667
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCC-hhhH-----HHHHHHHHcCCCHHHHHHHHHHHHhcCCCCch---hhhHHHHHHH
Q 047359 265 LCKEHQPEEVCGLLRDVVERGYIPC-AMEL-----SRFVASQCGKGKWKEVEELLSAVLDKGLLLDS---FCCSSLMEYY 335 (440)
Q Consensus 265 ~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~ 335 (440)
+...|++++|...+........... ...+ ...+..+...|+.+.|...+............ ..+..+..++
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence 7889999999999988754211111 1111 11123345578999999988775542211111 1134566778
Q ss_pred HcCCcHHHHHHHHHHHHhc----cCCc-CHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCC
Q 047359 336 CSNRQIDKAIALHIKIEKL----KGSL-DVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVV 392 (440)
Q Consensus 336 ~~~~~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 392 (440)
...|+.++|...+++.... |..+ ...+...+..++.+.|+.++|...+.++.+....
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 8999999999999988753 2222 1235666778889999999999999999876544
No 103
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.00 E-value=3e-07 Score=88.51 Aligned_cols=201 Identities=11% Similarity=0.067 Sum_probs=92.5
Q ss_pred hHhHHHHHHHHHhccchhHHHHHHHHHHHcCCCCC-----hhhHHHHHHHHHhcCChHHHHHHHhccc---CCchhHHHH
Q 047359 47 VSACNALLDALYRQNEIRLASCLYGAMVRDGVSPN-----KFTWSLVAQILCRSGKFEVVLGLLDSGI---YSSVMYNLV 118 (440)
Q Consensus 47 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~l 118 (440)
...|-..|......++.++|++++++++.. +.+. ...|.++++.-...|.-+...++|++.. ..-..|..|
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L 1536 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKL 1536 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHH
Confidence 344555555555555555555555555432 1111 1234444444444444455555555544 122234555
Q ss_pred HHHHHhcCChhHHHHHHHHHhcCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCcccccchHHHHHHHhhc
Q 047359 119 IDFYSKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDM 198 (440)
Q Consensus 119 i~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 198 (440)
...|.+.+.+++|-++|+.|.++.+ -....|...+..+.+..+-+.|..++.+.++.-....+ .......+..-.+.
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eH-v~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEH-VEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhh-HHHHHHHHHHHhhc
Confidence 5555555555555555555544333 23334444555555555555555555554443211111 22223333444444
Q ss_pred CcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCC
Q 047359 199 GKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGIT 252 (440)
Q Consensus 199 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 252 (440)
|+.+++..+|+......++ -...|+..+..=.+.|+.+.+..+|++....++.
T Consensus 1614 GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred CCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 5555555555544444333 3334555555555555555555555555444443
No 104
>PLN02789 farnesyltranstransferase
Probab=99.00 E-value=1.8e-06 Score=73.69 Aligned_cols=140 Identities=11% Similarity=0.070 Sum_probs=67.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCchh-hHHHHHHHHHhcC-ChhhHHHHHHHHHhcCCCCcccccchHHHH
Q 047359 115 YNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFS-TYSSILDGARRYE-KTEVSDRIVGLMVEKKLLPKHFLSGNDYVI 192 (440)
Q Consensus 115 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~ 192 (440)
+..+-..+...+..++|+.+.+++.+ +.|+.. +|+.--.++...| ++++++..++.+.+.+ |++ ..+|+...
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~---lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n--pkn-yqaW~~R~ 113 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIR---LNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN--PKN-YQIWHHRR 113 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHH---HCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC--Ccc-hHHhHHHH
Confidence 33344444555566666666666655 444433 3333333344444 3455666666555543 221 33444443
Q ss_pred HHHhhcCcH--HHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 047359 193 QKLSDMGKT--YAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFV 262 (440)
Q Consensus 193 ~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 262 (440)
..+.+.|+. +++..+++++.+.+++ +..+|+...-++...|+++++++.++++.+.++. +...|+...
T Consensus 114 ~~l~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~ 183 (320)
T PLN02789 114 WLAEKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRY 183 (320)
T ss_pred HHHHHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHH
Confidence 334444432 4445555555554443 4555555555555555555555555555555443 334444433
No 105
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.97 E-value=2.2e-07 Score=81.41 Aligned_cols=247 Identities=11% Similarity=0.041 Sum_probs=187.1
Q ss_pred HHHhcCChhhHHHHHHHHHhcCCCCcccccchHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccH
Q 047359 157 GARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRV 236 (440)
Q Consensus 157 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 236 (440)
-+.+.|++.+|.-.|+..++.+ |++ ..+|..|.......++-..|+..+++..+..+. +......|.-.|...|.-
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd--P~h-aeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD--PQH-AEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC--hHH-HHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhH
Confidence 3567899999999999998876 655 889999999999999999999999999988766 777888888899999999
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHH-----------HHHHhcCChHHHHHHHHHHH-HcCCCCChhhHHHHHHHHHcCC
Q 047359 237 KEAIQIYHLISERGITVRDSDYYAFV-----------NVLCKEHQPEEVCGLLRDVV-ERGYIPCAMELSRFVASQCGKG 304 (440)
Q Consensus 237 ~~a~~~~~~~~~~~~~~~~~~~~~l~-----------~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~ 304 (440)
..|++.++......++ |..+. ..+..........++|-++. ..+..+|......|.-.|.-.|
T Consensus 370 ~~Al~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ 444 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSG 444 (579)
T ss_pred HHHHHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcch
Confidence 9999999988765422 11111 11112223344555555554 4444577788888888898999
Q ss_pred CHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcC-HHhHHHHHHHHHhcCcHHHHHHHH
Q 047359 305 KWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLD-VATYDVLLDGLFKDGRMEEAVRIF 383 (440)
Q Consensus 305 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~ 383 (440)
++++|...|+.++...+. |..+||.|...++...+.++|+.-|++.++. +|+ +.+...|.-.|...|.+++|.+.|
T Consensus 445 efdraiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hl 521 (579)
T KOG1125|consen 445 EFDRAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHL 521 (579)
T ss_pred HHHHHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHH
Confidence 999999999999987655 8889999999999999999999999999985 444 446667888899999999999988
Q ss_pred HHHHHcCCC----------chhhHHHHHHHHHhcccHHHHHH
Q 047359 384 DYMKELKVV----------SSSSFVIVVSRLCHLKELRKAMK 415 (440)
Q Consensus 384 ~~~~~~~~~----------~~~~~~~l~~~~~~~g~~~~a~~ 415 (440)
-.+...... +..+|..|=.++.-.++.+-+.+
T Consensus 522 L~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 522 LEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred HHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 766432111 23466666666666666554443
No 106
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.96 E-value=6.1e-08 Score=72.74 Aligned_cols=103 Identities=9% Similarity=-0.058 Sum_probs=75.4
Q ss_pred hHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhc
Q 047359 328 CSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHL 407 (440)
Q Consensus 328 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 407 (440)
+......+...|++++|...|+......+. +...|..+..++.+.|++++|...|+++.+.+|.++..+..+..++...
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence 445566677777888888887777765433 6667777777777888888888888888877777777777788778888
Q ss_pred ccHHHHHHHHHHHHHCCCCCCHHHHH
Q 047359 408 KELRKAMKNHDEMLKMGHKPDEATYK 433 (440)
Q Consensus 408 g~~~~a~~~~~~m~~~~~~p~~~t~~ 433 (440)
|++++|...|++.++ +.|+...+.
T Consensus 106 g~~~eAi~~~~~Al~--~~p~~~~~~ 129 (144)
T PRK15359 106 GEPGLAREAFQTAIK--MSYADASWS 129 (144)
T ss_pred CCHHHHHHHHHHHHH--hCCCChHHH
Confidence 888888888887777 456654443
No 107
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.93 E-value=7e-07 Score=84.03 Aligned_cols=136 Identities=10% Similarity=-0.033 Sum_probs=84.1
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHH
Q 047359 254 RDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLME 333 (440)
Q Consensus 254 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 333 (440)
+...+..|.....+.|.+++|..+++...+.. +-+......+...+.+.+++++|...+++.....+. +......+..
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~a~ 162 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLEAK 162 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHHHH
Confidence 45566666666666677777777776666642 223344555566666666777777766666665443 4555555666
Q ss_pred HHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCC
Q 047359 334 YYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVV 392 (440)
Q Consensus 334 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 392 (440)
++...|++++|..+|+++...+.. +..++..+..++...|+.++|...|++..+..-+
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~ 220 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLDAIGD 220 (694)
T ss_pred HHHHhcchHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCc
Confidence 666667777777777766663322 3556666666666667777777777666655433
No 108
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.92 E-value=1.2e-06 Score=83.39 Aligned_cols=250 Identities=13% Similarity=0.019 Sum_probs=139.0
Q ss_pred CchhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCchh-hHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCcccccchH
Q 047359 111 SSVMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFS-TYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGND 189 (440)
Q Consensus 111 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 189 (440)
+...+..|+..+...+++++|.++.+...+ ..|+.. .|-.+...+.+.++.+.+..+
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~---~~P~~i~~yy~~G~l~~q~~~~~~~~lv------------------- 87 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLK---EHKKSISALYISGILSLSRRPLNDSNLL------------------- 87 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hCCcceehHHHHHHHHHhhcchhhhhhh-------------------
Confidence 344566666666666666666666665544 334433 222222234444443333332
Q ss_pred HHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 047359 190 YVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEH 269 (440)
Q Consensus 190 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 269 (440)
.++.......++.....+...+.+.+ -+...+..+..+|-+.|+.++|..+|+++.+..+. +..+.|.+...|...
T Consensus 88 ~~l~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~- 163 (906)
T PRK14720 88 NLIDSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE- 163 (906)
T ss_pred hhhhhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-
Confidence 12222222333333333333333321 13335556666666777777777777777666632 566666666666666
Q ss_pred ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHH
Q 047359 270 QPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHI 349 (440)
Q Consensus 270 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 349 (440)
+.++|..++...... +...+++..+.++|.++....+. + .+.-.++.+
T Consensus 164 dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-d----------------~d~f~~i~~ 211 (906)
T PRK14720 164 DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-D----------------FDFFLRIER 211 (906)
T ss_pred hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-c----------------chHHHHHHH
Confidence 677776666665543 34445666666666666654322 2 222222333
Q ss_pred HHHhc-cCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcccHHHHHHHHHHHH
Q 047359 350 KIEKL-KGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLKELRKAMKNHDEML 421 (440)
Q Consensus 350 ~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 421 (440)
.+... |..--..++..+-..|...++++++..+++.+.+..+.+..+...++.+|. +++.. ...|++.+
T Consensus 212 ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l 281 (906)
T PRK14720 212 KVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK--EKYKD-HSLLEDYL 281 (906)
T ss_pred HHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHccC-cchHHHHH
Confidence 33322 222334566667777888889999999999999998888888888888887 33333 34444443
No 109
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.90 E-value=3.6e-05 Score=67.45 Aligned_cols=388 Identities=13% Similarity=0.119 Sum_probs=230.5
Q ss_pred ccChHhHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhccc---CCchhHHHHHH
Q 047359 44 VPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSGKFEVVLGLLDSGI---YSSVMYNLVID 120 (440)
Q Consensus 44 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~li~ 120 (440)
+-|..+|+.||+-+..+ .++++++.++++... ++-....|..-+..-.+..+++..+.+|.+.. -+...|...++
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~ 94 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLS 94 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHH
Confidence 56899999999887766 899999999999864 34467789999999999999999999999987 66777777776
Q ss_pred HHHhc-CChh----HHHHHHHHHhcCCCCCCch-hhHHHHHHH---------HHhcCChhhHHHHHHHHHhcCCCCcccc
Q 047359 121 FYSKK-GDFG----AAFDRLNEMCNGRNLTPGF-STYSSILDG---------ARRYEKTEVSDRIVGLMVEKKLLPKHFL 185 (440)
Q Consensus 121 ~~~~~-~~~~----~a~~~~~~~~~~~~~~p~~-~~~~~l~~~---------~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 185 (440)
--.+. |+.. ...+.|+-..+..|..+-. ..|+..+.. +....+.+...+++++++...+..= .
T Consensus 95 YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nl--E 172 (656)
T KOG1914|consen 95 YVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNL--E 172 (656)
T ss_pred HHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccH--H
Confidence 54432 3332 2344455544435544432 234443332 2333455667777777765421110 1
Q ss_pred cchH------HHHHHH-------hhcCcHHHHHHHHHHHHh--cCCCCCHHh---------------HHHHHHHHhhhcc
Q 047359 186 SGND------YVIQKL-------SDMGKTYAAEMIFKRACD--EKIELQDDT---------------CGCMLKALSKEGR 235 (440)
Q Consensus 186 ~~~~------~l~~~~-------~~~~~~~~a~~~~~~~~~--~~~~~~~~~---------------~~~l~~~~~~~~~ 235 (440)
..|+ .-|+.. -+...+..|.++++++.. .|......+ |..+|.- -+.+-
T Consensus 173 kLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~w-EksNp 251 (656)
T KOG1914|consen 173 KLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKW-EKSNP 251 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHH-HhcCC
Confidence 1111 111111 122346667777766643 222111111 2222221 11111
Q ss_pred H---------HHHHHHHHHHHH-cCCCCChhh-HHHH----HHHHHhcCC-------hHHHHHHHHHHHHcCCCCChhhH
Q 047359 236 V---------KEAIQIYHLISE-RGITVRDSD-YYAF----VNVLCKEHQ-------PEEVCGLLRDVVERGYIPCAMEL 293 (440)
Q Consensus 236 ~---------~~a~~~~~~~~~-~~~~~~~~~-~~~l----~~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~ 293 (440)
. ....-++++... .+..|+... +... -+.+...|+ .+++..+++.....-..-+..+|
T Consensus 252 L~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly 331 (656)
T KOG1914|consen 252 LRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLY 331 (656)
T ss_pred cccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 011112222211 122222110 0111 112223333 35566666665543333344444
Q ss_pred HHHHHHHHcC---CCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCc-CHHhHHHHHHH
Q 047359 294 SRFVASQCGK---GKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSL-DVATYDVLLDG 369 (440)
Q Consensus 294 ~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~ 369 (440)
..+...--.. ...+.....+++.......--..+|..++..-.+..-++.|..+|.++.+.+..+ ++..+++++.-
T Consensus 332 ~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy 411 (656)
T KOG1914|consen 332 FALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEY 411 (656)
T ss_pred HHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHH
Confidence 4443322111 1355566666666543222234567788888888999999999999999988777 66677777776
Q ss_pred HHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcccHHHHHHHHHHHHHCCCCCCH--HHHHHHhh
Q 047359 370 LFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDE--ATYKQVIS 437 (440)
Q Consensus 370 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~t~~~ll~ 437 (440)
|+ .++.+.|.++|+--..+...++..-...+..+.+.|+-..|..+|++.+..++.||. ..|..+|.
T Consensus 412 ~c-skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~ 480 (656)
T KOG1914|consen 412 YC-SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLE 480 (656)
T ss_pred Hh-cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHH
Confidence 54 678899999999888877777777788888889999999999999999988666664 56666553
No 110
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.89 E-value=3.4e-07 Score=82.49 Aligned_cols=239 Identities=13% Similarity=0.053 Sum_probs=183.4
Q ss_pred CCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCcccccchHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHhH
Q 047359 144 LTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTC 223 (440)
Q Consensus 144 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 223 (440)
.+|-...-..+...+...|-...|..+++++ ..|..++.+|...|+..+|..+..+-.++ +||+..|
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl-----------emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~ly 460 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL-----------EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLY 460 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----------HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhH
Confidence 3344444456777888899999999998875 35566899999999999999999888873 5788888
Q ss_pred HHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcC
Q 047359 224 GCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGK 303 (440)
Q Consensus 224 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 303 (440)
..+.+.....--+++|.++.+..... .-..+.....+.++++++.+.|+.-.+.+ +.-..+|-.+..+..+.
T Consensus 461 c~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALql 532 (777)
T KOG1128|consen 461 CLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQL 532 (777)
T ss_pred HHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHH
Confidence 88888877777788888888765443 11222223345789999999999887754 34556787888888888
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHH
Q 047359 304 GKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIF 383 (440)
Q Consensus 304 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 383 (440)
++++.|.+.|.......+. +...||.+-.+|.+.++-.+|...+.+..+.+. -+...|...+....+.|.+++|++.+
T Consensus 533 ek~q~av~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~-~~w~iWENymlvsvdvge~eda~~A~ 610 (777)
T KOG1128|consen 533 EKEQAAVKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY-QHWQIWENYMLVSVDVGEFEDAIKAY 610 (777)
T ss_pred hhhHHHHHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC-CCCeeeechhhhhhhcccHHHHHHHH
Confidence 9999999999988876544 677899999999999999999999999998874 36778888888889999999999999
Q ss_pred HHHHHcCCC--chhhHHHHHHHHH
Q 047359 384 DYMKELKVV--SSSSFVIVVSRLC 405 (440)
Q Consensus 384 ~~~~~~~~~--~~~~~~~l~~~~~ 405 (440)
.++...... ++.+...++....
T Consensus 611 ~rll~~~~~~~d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 611 HRLLDLRKKYKDDEVLLIIVRTVL 634 (777)
T ss_pred HHHHHhhhhcccchhhHHHHHHHH
Confidence 888654333 5555555544443
No 111
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.88 E-value=2.1e-05 Score=73.97 Aligned_cols=62 Identities=13% Similarity=0.147 Sum_probs=33.7
Q ss_pred CHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcccHHHHHHHHHHHH
Q 047359 359 DVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLKELRKAMKNHDEML 421 (440)
Q Consensus 359 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 421 (440)
...-..-|+..|...|-+++.+.+++......-.....|..|.-.|.+- ++++..+.++-+.
T Consensus 1278 hadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky-kp~km~EHl~LFw 1339 (1666)
T KOG0985|consen 1278 HADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY-KPEKMMEHLKLFW 1339 (1666)
T ss_pred ehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHH
Confidence 3344556666677777777777666655433222455566666555543 3444444444443
No 112
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.87 E-value=5.2e-06 Score=75.31 Aligned_cols=168 Identities=16% Similarity=0.109 Sum_probs=86.1
Q ss_pred HHHHhhcCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh
Q 047359 192 IQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQP 271 (440)
Q Consensus 192 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 271 (440)
+.+.....++.+|+.+++.+.+.... ..-|..+..-|+..|+++.|.++|.+.- .++-.|..|.+.|++
T Consensus 739 ieaai~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccH
Confidence 44455556666677777666654332 2345556666777777777777765421 245556667777777
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHH
Q 047359 272 EEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKI 351 (440)
Q Consensus 272 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 351 (440)
++|.++-.+... .......|-+-..-.-+.|++.+|++++-.+.. |+ ..|..|-+.|..+..+++..+-
T Consensus 808 ~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~-----~aiqmydk~~~~ddmirlv~k~ 876 (1636)
T KOG3616|consen 808 EDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PD-----KAIQMYDKHGLDDDMIRLVEKH 876 (1636)
T ss_pred HHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEccC----ch-----HHHHHHHhhCcchHHHHHHHHh
Confidence 777766655432 122333444444444555666666655532221 12 2344555555555555544332
Q ss_pred HhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHH
Q 047359 352 EKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFD 384 (440)
Q Consensus 352 ~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 384 (440)
.. ..-..|...+..-|...|+.+.|..-|-
T Consensus 877 h~---d~l~dt~~~f~~e~e~~g~lkaae~~fl 906 (1636)
T KOG3616|consen 877 HG---DHLHDTHKHFAKELEAEGDLKAAEEHFL 906 (1636)
T ss_pred Ch---hhhhHHHHHHHHHHHhccChhHHHHHHH
Confidence 21 1112233344444445555555544443
No 113
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.86 E-value=1.2e-06 Score=72.64 Aligned_cols=185 Identities=11% Similarity=0.009 Sum_probs=124.7
Q ss_pred CCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCC-C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh----
Q 047359 218 LQDDTCGCMLKALSKEGRVKEAIQIYHLISERGIT-V-RDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAM---- 291 (440)
Q Consensus 218 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---- 291 (440)
.....+..+...+...|+++.|...++++....+. | ....+..+..++...|++++|...++.+.+.. |+..
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH--PNHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCchHH
Confidence 34556777778888889999999999888776432 1 12456677788888899999999998888753 3222
Q ss_pred hHHHHHHHHHcC--------CCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhH
Q 047359 292 ELSRFVASQCGK--------GKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATY 363 (440)
Q Consensus 292 ~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 363 (440)
.+..+..++... |+.++|.+.++.+.+..+. +...+..+.... ..... . ....
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~----~~~~~------~--------~~~~ 169 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMD----YLRNR------L--------AGKE 169 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHH----HHHHH------H--------HHHH
Confidence 344444455443 6677788888877765332 222221111110 00000 0 0112
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHcCCC---chhhHHHHHHHHHhcccHHHHHHHHHHHHHC
Q 047359 364 DVLLDGLFKDGRMEEAVRIFDYMKELKVV---SSSSFVIVVSRLCHLKELRKAMKNHDEMLKM 423 (440)
Q Consensus 364 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 423 (440)
..+...+.+.|++++|...++...+..+. .+..+..++.++.+.|++++|...++.+...
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 25566788999999999999999988664 4578999999999999999999999988764
No 114
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.86 E-value=5.8e-06 Score=77.40 Aligned_cols=379 Identities=8% Similarity=-0.065 Sum_probs=206.1
Q ss_pred cchHHHHHHHHHhcCCccChHhHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhc
Q 047359 28 FMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSGKFEVVLGLLDS 107 (440)
Q Consensus 28 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 107 (440)
...|+..|-+..+..+ .=...|..|...|...-+...|.+.|+...+.+ ..+...+......|++..+++.|..+.-.
T Consensus 474 ~~~al~ali~alrld~-~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALRLDV-SLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 6666666666655431 123467777777777667777888888776653 23556677777788888888877777332
Q ss_pred cc------CCchhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCC-chhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCC
Q 047359 108 GI------YSSVMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTP-GFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLL 180 (440)
Q Consensus 108 ~~------~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 180 (440)
.. .-...|....-.|.+.++...|..-|+.... +.| |...|..+.++|...|++..|.++|.+.....
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR---~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr-- 626 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALR---TDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR-- 626 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhc---CCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--
Confidence 22 1111233333445666777777777776654 444 44467777777777777777777776665533
Q ss_pred CcccccchHHHHHHHhhcCcHHHHHHHHHHHHhcC------CCCCHHhHHHHHHHHhhhccHHHHHHHHHHH-------H
Q 047359 181 PKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEK------IELQDDTCGCMLKALSKEGRVKEAIQIYHLI-------S 247 (440)
Q Consensus 181 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-------~ 247 (440)
|++ ...-.......+..|.+.+|...+..+.... ..--..++-.+...+.-.|-...|.++++.- .
T Consensus 627 P~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l 705 (1238)
T KOG1127|consen 627 PLS-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSL 705 (1238)
T ss_pred cHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 432 2222223444556677777776666654321 0001112222222222222222222222221 1
Q ss_pred HcCCCCChhhHHHHHHHH-----------------------HhcCCh---H---HHHHHHHHHHHcCCCCChhhHHHHHH
Q 047359 248 ERGITVRDSDYYAFVNVL-----------------------CKEHQP---E---EVCGLLRDVVERGYIPCAMELSRFVA 298 (440)
Q Consensus 248 ~~~~~~~~~~~~~l~~~~-----------------------~~~~~~---~---~a~~~~~~~~~~~~~~~~~~~~~l~~ 298 (440)
......+...|-.+-++| ...+.. + -+.+.+-.-. ....+..+|..+..
T Consensus 706 ~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hl--sl~~~~~~WyNLGi 783 (1238)
T KOG1127|consen 706 IHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHL--SLAIHMYPWYNLGI 783 (1238)
T ss_pred HHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHH--HHhhccchHHHHhH
Confidence 111111111221111111 111111 1 0000000000 01112334444433
Q ss_pred HHHc----C----CCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHH
Q 047359 299 SQCG----K----GKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGL 370 (440)
Q Consensus 299 ~~~~----~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 370 (440)
.|.+ . .+...|...+++..+..-. +..+|+.|.-. ...|++.-|...|-+....... +..+|..+...+
T Consensus 784 nylr~f~~l~et~~~~~~Ai~c~KkaV~L~an-n~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~-~~~~W~NlgvL~ 860 (1238)
T KOG1127|consen 784 NYLRYFLLLGETMKDACTAIRCCKKAVSLCAN-NEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPT-CHCQWLNLGVLV 860 (1238)
T ss_pred HHHHHHHHcCCcchhHHHHHHHHHHHHHHhhc-cHHHHHHHHHh-hccchhhhhhhhhhhhhhcccc-chhheeccceeE
Confidence 3333 1 2334566667766655332 56666665544 5557777777776665554332 566788888888
Q ss_pred HhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcccHHHHHHHHHH
Q 047359 371 FKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLKELRKAMKNHDE 419 (440)
Q Consensus 371 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 419 (440)
.+..+++.|...|...+...|.+...|..........|+.-++..+|..
T Consensus 861 l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 861 LENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred EecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 8899999999999999999888888887777777778888888887765
No 115
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.84 E-value=5.5e-06 Score=80.25 Aligned_cols=234 Identities=12% Similarity=0.027 Sum_probs=167.1
Q ss_pred CcccccchHHHHHHHhhcCcHHHHHHHHHHHHhc-CCCCC---HHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChh
Q 047359 181 PKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDE-KIELQ---DDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDS 256 (440)
Q Consensus 181 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 256 (440)
|+. ...|...|......++.++|.++.++.... +++-. .-.|.++++.-..-|.-+...++|+++.+.. -...
T Consensus 1455 PNS-Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~ 1531 (1710)
T KOG1070|consen 1455 PNS-SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYT 1531 (1710)
T ss_pred CCc-chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHH
Confidence 543 566777788888888888888888887653 22211 2256666666666677778888888887742 1245
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCC-CchhhhHHHHHHH
Q 047359 257 DYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLL-LDSFCCSSLMEYY 335 (440)
Q Consensus 257 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~ 335 (440)
.|..|...|.+.+.+++|.++++.|.+.- ......|...+..+.+.++-+.|..++.+.++.-++ -........+..-
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 67888888888999999999999988752 356678888888888888888888888888765322 1334455566666
Q ss_pred HcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCC--chh-hHHHHHHHHHhcccHHH
Q 047359 336 CSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVV--SSS-SFVIVVSRLCHLKELRK 412 (440)
Q Consensus 336 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~-~~~~l~~~~~~~g~~~~ 412 (440)
.+.|+.+++..+|+......++ -...|+.+++.-.++|+.+.++.+|+++...+.. ... .|...+..--+.|+-+.
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKN 1689 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhh
Confidence 7889999999999888876444 5678899999999999999999999999888766 333 44455554445566544
Q ss_pred HHHHHHH
Q 047359 413 AMKNHDE 419 (440)
Q Consensus 413 a~~~~~~ 419 (440)
+..+=.+
T Consensus 1690 vE~VKar 1696 (1710)
T KOG1070|consen 1690 VEYVKAR 1696 (1710)
T ss_pred HHHHHHH
Confidence 4444333
No 116
>PF12854 PPR_1: PPR repeat
Probab=98.84 E-value=3.2e-09 Score=56.64 Aligned_cols=32 Identities=19% Similarity=0.411 Sum_probs=19.9
Q ss_pred CCCCChHhHHHHHHHHHccCCcchHHHHHHHH
Q 047359 7 GRDSQSDALSLVLDCYSHKGLFMDGLEVYRMM 38 (440)
Q Consensus 7 g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~ 38 (440)
|+.||..+|+.+|.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55666666666666666666666666666655
No 117
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.82 E-value=2e-07 Score=69.74 Aligned_cols=120 Identities=15% Similarity=0.088 Sum_probs=86.9
Q ss_pred HHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCC
Q 047359 312 LLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKV 391 (440)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 391 (440)
.+++.....+. +......+...+...|++++|.+.++.+...+.. +...+..+...+.+.|++++|...++...+.++
T Consensus 5 ~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 82 (135)
T TIGR02552 5 TLKDLLGLDSE-QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALDP 82 (135)
T ss_pred hHHHHHcCChh-hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34444444322 3344555666777888888888888888775433 667777888888888888888888888888777
Q ss_pred CchhhHHHHHHHHHhcccHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 047359 392 VSSSSFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDEATYKQV 435 (440)
Q Consensus 392 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~l 435 (440)
.++..+..+..++...|++++|...+++..+ +.|+...+..+
T Consensus 83 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~ 124 (135)
T TIGR02552 83 DDPRPYFHAAECLLALGEPESALKALDLAIE--ICGENPEYSEL 124 (135)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hccccchHHHH
Confidence 7788888888888888888888888888877 45666654443
No 118
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.82 E-value=4.5e-05 Score=70.34 Aligned_cols=117 Identities=10% Similarity=0.070 Sum_probs=55.1
Q ss_pred hHhHHHHHHHHHccCCcchHHHHHHHHHhc-C-------C-ccChHhHHHHHHHHHhccchhHHHHHHHHHHHcCCCCCh
Q 047359 12 SDALSLVLDCYSHKGLFMDGLEVYRMMRVY-G-------F-VPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNK 82 (440)
Q Consensus 12 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-~-------~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 82 (440)
..+|..+.+.|.+.++++-|.-.+..|... | . .|+ .+=..+.......|.+++|..+|++-.+
T Consensus 757 ~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR------- 828 (1416)
T KOG3617|consen 757 DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKR------- 828 (1416)
T ss_pred hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH-------
Confidence 345555666666665555555444444321 0 0 011 1111111222344556666666655543
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHhccc--CCchhHHHHHHHHHhcCChhHHHHHHHHH
Q 047359 83 FTWSLVAQILCRSGKFEVVLGLLDSGI--YSSVMYNLVIDFYSKKGDFGAAFDRLNEM 138 (440)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 138 (440)
|..|=+.|-..|.+++|.++-+.-. .=..||.....-+-..+|.+.|++.|++.
T Consensus 829 --~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~ 884 (1416)
T KOG3617|consen 829 --YDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKA 884 (1416)
T ss_pred --HHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhc
Confidence 2233344555566666666554432 22234444445555556666666666543
No 119
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.82 E-value=9.6e-06 Score=73.64 Aligned_cols=134 Identities=16% Similarity=0.116 Sum_probs=84.9
Q ss_pred HHHhcCChhHHHHHHHHHhcCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCcccccchHHHHHHHhhcCc
Q 047359 121 FYSKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGK 200 (440)
Q Consensus 121 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 200 (440)
-+.+.|+++.|...|-+... ....+.+......|.+|+.+++.+...... ...|..+.+.|...|+
T Consensus 715 hl~~~~q~daainhfiea~~----------~~kaieaai~akew~kai~ildniqdqk~~----s~yy~~iadhyan~~d 780 (1636)
T KOG3616|consen 715 HLEQIGQLDAAINHFIEANC----------LIKAIEAAIGAKEWKKAISILDNIQDQKTA----SGYYGEIADHYANKGD 780 (1636)
T ss_pred HHHHHHhHHHHHHHHHHhhh----------HHHHHHHHhhhhhhhhhHhHHHHhhhhccc----cccchHHHHHhccchh
Confidence 34455666666555544421 223455566677888888888887765422 3456667788888888
Q ss_pred HHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHH
Q 047359 201 TYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLR 279 (440)
Q Consensus 201 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 279 (440)
++.|+++|.+.- .++-.|..|.+.|++++|.++-++.. |.......|-+-..-+-..|++.+|.+++-
T Consensus 781 fe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyi 848 (1636)
T KOG3616|consen 781 FEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYI 848 (1636)
T ss_pred HHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeE
Confidence 888888885532 45667778888888888887766543 333344455555555556666666665553
No 120
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.81 E-value=2.1e-06 Score=68.24 Aligned_cols=153 Identities=10% Similarity=0.107 Sum_probs=110.5
Q ss_pred HHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCH
Q 047359 227 LKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKW 306 (440)
Q Consensus 227 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 306 (440)
+..|...|+++.+....+.+... . ..+...++.+++...++...+.+ +.+...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~----~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADP----L--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCc----c--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
Confidence 34577778877764443222111 0 01112556677777777777654 56777888888888888999
Q ss_pred HHHHHHHHHHHhcCCCCchhhhHHHHHH-HHcCCc--HHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHH
Q 047359 307 KEVEELLSAVLDKGLLLDSFCCSSLMEY-YCSNRQ--IDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIF 383 (440)
Q Consensus 307 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~--~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 383 (440)
++|...+++..+..+. +...+..+..+ +...|+ .++|.+++++..+.+.. +...+..+...+.+.|++++|+..|
T Consensus 90 ~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 90 DNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999988887654 67777777775 466676 58899999999887655 6778888888888999999999999
Q ss_pred HHHHHcCCCch
Q 047359 384 DYMKELKVVSS 394 (440)
Q Consensus 384 ~~~~~~~~~~~ 394 (440)
+++.+..+++.
T Consensus 168 ~~aL~l~~~~~ 178 (198)
T PRK10370 168 QKVLDLNSPRV 178 (198)
T ss_pred HHHHhhCCCCc
Confidence 99988887733
No 121
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.80 E-value=2.4e-06 Score=67.70 Aligned_cols=171 Identities=11% Similarity=0.068 Sum_probs=105.7
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCC
Q 047359 242 IYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGL 321 (440)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 321 (440)
+.+.+.......+......-...|+..+++++|++..+... +......=+..+.+..+++-|.+.+++|.+..
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id- 167 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID- 167 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-
Confidence 34444444333333333344455677777777777776521 11222222333455667777777777777642
Q ss_pred CCchhhhHHHHHHHHc----CCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhH
Q 047359 322 LLDSFCCSSLMEYYCS----NRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSF 397 (440)
Q Consensus 322 ~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 397 (440)
+..|.+.|..++.+ .+....|.-+|+++.++ ..|+..+.+....++...|++++|..+++......+.++.+.
T Consensus 168 --ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL 244 (299)
T KOG3081|consen 168 --EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETL 244 (299)
T ss_pred --hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHH
Confidence 55666666666543 34577777788877764 556777777777777788888888888888887777777777
Q ss_pred HHHHHHHHhcccHHHHH-HHHHHHHH
Q 047359 398 VIVVSRLCHLKELRKAM-KNHDEMLK 422 (440)
Q Consensus 398 ~~l~~~~~~~g~~~~a~-~~~~~m~~ 422 (440)
..++.+-...|+..++. +.+.++..
T Consensus 245 ~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 245 ANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 77777666666554433 34444443
No 122
>PF12854 PPR_1: PPR repeat
Probab=98.80 E-value=1e-08 Score=54.68 Aligned_cols=32 Identities=22% Similarity=0.551 Sum_probs=16.7
Q ss_pred CCCCChhhHHHHHHHHHhcCChHHHHHHHhcc
Q 047359 77 GVSPNKFTWSLVAQILCRSGKFEVVLGLLDSG 108 (440)
Q Consensus 77 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 108 (440)
|+.||..||+.||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555544
No 123
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.79 E-value=2.7e-06 Score=70.50 Aligned_cols=187 Identities=12% Similarity=-0.023 Sum_probs=132.7
Q ss_pred ccchHHHHHHHhhcCcHHHHHHHHHHHHhcCCC-CC-HHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCCh--hhHHH
Q 047359 185 LSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIE-LQ-DDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRD--SDYYA 260 (440)
Q Consensus 185 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ 260 (440)
...+..+...+...|+++.|...++++....+. |. ...+..+..++.+.|++++|...++++.+..+.... .++..
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 112 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYL 112 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHH
Confidence 667788889999999999999999999886543 11 246777889999999999999999999887543222 13444
Q ss_pred HHHHHHhc--------CChHHHHHHHHHHHHcCCCCChh-hHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHH
Q 047359 261 FVNVLCKE--------HQPEEVCGLLRDVVERGYIPCAM-ELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSL 331 (440)
Q Consensus 261 l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 331 (440)
+..++... |++++|.+.++.+.+.. |+.. ....+.... . ... .. ......+
T Consensus 113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~-~---~~~------~~--------~~~~~~~ 172 (235)
T TIGR03302 113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMD-Y---LRN------RL--------AGKELYV 172 (235)
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHH-H---HHH------HH--------HHHHHHH
Confidence 55555544 77899999999998763 4332 222221110 0 000 00 0111245
Q ss_pred HHHHHcCCcHHHHHHHHHHHHhccCC-c-CHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCC
Q 047359 332 MEYYCSNRQIDKAIALHIKIEKLKGS-L-DVATYDVLLDGLFKDGRMEEAVRIFDYMKELKV 391 (440)
Q Consensus 332 ~~~~~~~~~~~~a~~~~~~~~~~~~~-p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 391 (440)
...|.+.|++++|...+++..+.... | ....+..+..++.+.|++++|...++.+....+
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 66788999999999999999876432 2 356888999999999999999999998876643
No 124
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.78 E-value=0.00018 Score=68.09 Aligned_cols=297 Identities=12% Similarity=0.087 Sum_probs=141.6
Q ss_pred CChHhHHHHHHHHHccCCcchHHHHHHHHHhcCC--ccChHhHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHH
Q 047359 10 SQSDALSLVLDCYSHKGLFMDGLEVYRMMRVYGF--VPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSL 87 (440)
Q Consensus 10 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 87 (440)
.|+..-+..+.++...+-+.+-+++++.+.-.+- ..+...-|.|+-...+. +.....+..+++-..+ .|+
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyD-a~~------ 1053 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYD-APD------ 1053 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCC-chh------
Confidence 4455556667777777777777777777763221 11222333343333332 2334444444443221 111
Q ss_pred HHHHHHhcCChHHHHHHHhcccC--------------------------CchhHHHHHHHHHhcCChhHHHHHHHHHhcC
Q 047359 88 VAQILCRSGKFEVVLGLLDSGIY--------------------------SSVMYNLVIDFYSKKGDFGAAFDRLNEMCNG 141 (440)
Q Consensus 88 l~~~~~~~~~~~~a~~~~~~~~~--------------------------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 141 (440)
+.......+-+++|..+|++... .+..|+.+..+-.+.|...+|++-|-+.
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika--- 1130 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA--- 1130 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc---
Confidence 12223334444555555554432 2334555555555555555555554443
Q ss_pred CCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCcccccchHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHH
Q 047359 142 RNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDD 221 (440)
Q Consensus 142 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 221 (440)
-|+..|..+++.+.+.|.+++-.+.+....+....|. .-..++-+|++.++..+.++++ ..|+..
T Consensus 1131 ----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~----id~eLi~AyAkt~rl~elE~fi-------~gpN~A 1195 (1666)
T KOG0985|consen 1131 ----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY----IDSELIFAYAKTNRLTELEEFI-------AGPNVA 1195 (1666)
T ss_pred ----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc----chHHHHHHHHHhchHHHHHHHh-------cCCCch
Confidence 2334555566666666666666655555555443333 2234555566555555544443 124444
Q ss_pred hHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 047359 222 TCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQC 301 (440)
Q Consensus 222 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 301 (440)
....+..-|...|.++.|.-+|.. ...|..+...+...|++..|..--+.. .+..+|...-.+|.
T Consensus 1196 ~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCv 1260 (1666)
T KOG0985|consen 1196 NIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACV 1260 (1666)
T ss_pred hHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHh
Confidence 444455555555555555444432 223445555555555555554433322 13344444444444
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHH
Q 047359 302 GKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIE 352 (440)
Q Consensus 302 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 352 (440)
..+.+.-| +|...++-....-...++..|-..|-+++.+.+++...
T Consensus 1261 d~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L 1306 (1666)
T KOG0985|consen 1261 DKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL 1306 (1666)
T ss_pred chhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh
Confidence 43333222 12222222233344556666666666666666555443
No 125
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.78 E-value=3.3e-06 Score=66.99 Aligned_cols=155 Identities=14% Similarity=0.011 Sum_probs=76.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCc
Q 047359 261 FVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQ 340 (440)
Q Consensus 261 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 340 (440)
+-..+...|+-+....+....... .+.+.......+....+.|++..|...+++.....+ +|...|+.+.-+|.+.|+
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p-~d~~~~~~lgaaldq~Gr 149 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAP-TDWEAWNLLGAALDQLGR 149 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCC-CChhhhhHHHHHHHHccC
Confidence 333444444444444444443221 112222333344455555555555555555554432 255555555555555555
Q ss_pred HHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcccHHHHHHHHH
Q 047359 341 IDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLKELRKAMKNHD 418 (440)
Q Consensus 341 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 418 (440)
.+.|..-|.+..+..+. ++..++.+.-.+.-.|+.+.|..++......+..+..+-..+.......|++++|..+..
T Consensus 150 ~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 150 FDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred hhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 55555555555554322 344445555555555555555555555555544455555555555555555555555443
No 126
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.78 E-value=2.8e-05 Score=73.04 Aligned_cols=363 Identities=12% Similarity=-0.007 Sum_probs=224.5
Q ss_pred HHHHHhccchhHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCChHHHHHHHhccc----CCchhHHHHHHHHHhcCCh
Q 047359 54 LDALYRQNEIRLASCLYGAMVRDGVSPN-KFTWSLVAQILCRSGKFEVVLGLLDSGI----YSSVMYNLVIDFYSKKGDF 128 (440)
Q Consensus 54 l~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~li~~~~~~~~~ 128 (440)
+..|.+ ++...|...|-+..+. .|+ ...|..|...|....+...|.+.|++.. .+...+......|++..++
T Consensus 466 a~~~~r-K~~~~al~ali~alrl--d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~w 542 (1238)
T KOG1127|consen 466 ALGCMR-KNSALALHALIRALRL--DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTW 542 (1238)
T ss_pred HHHHhh-hhHHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccH
Confidence 334443 3467777777666654 333 4578999999999999999999999877 5566788999999999999
Q ss_pred hHHHHHHHHHhcCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCcccccchHHHHHHHhhcCcHHHHHHHH
Q 047359 129 GAAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIF 208 (440)
Q Consensus 129 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 208 (440)
+.|..+.-..-+......-...|...--.|.+.++...+..-|+...+.. |.+ ...|..++.+|.++|.+..|.++|
T Consensus 543 e~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d--PkD-~n~W~gLGeAY~~sGry~~AlKvF 619 (1238)
T KOG1127|consen 543 EEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD--PKD-YNLWLGLGEAYPESGRYSHALKVF 619 (1238)
T ss_pred HHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC--chh-HHHHHHHHHHHHhcCceehHHHhh
Confidence 99999855443311111112233334445778899999999999888754 543 788999999999999999999999
Q ss_pred HHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHc------CCCCChhhHHHHHHHHHhcCChHHHHHHHHH--
Q 047359 209 KRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISER------GITVRDSDYYAFVNVLCKEHQPEEVCGLLRD-- 280 (440)
Q Consensus 209 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-- 280 (440)
.+.....+......| -..-.-+..|.+.+|+..+...... +..--..++-.+...+...|-..++..+++.
T Consensus 620 ~kAs~LrP~s~y~~f-k~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksi 698 (1238)
T KOG1127|consen 620 TKASLLRPLSKYGRF-KEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSI 698 (1238)
T ss_pred hhhHhcCcHhHHHHH-HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 998876443211122 2233445679999999888776543 1111122333333333223322222222222
Q ss_pred -----HHHcCC--------------------CCC---hhhHHHHHHHHHcCCCH---H---HHHHHHHHHHhcCCCCchh
Q 047359 281 -----VVERGY--------------------IPC---AMELSRFVASQCGKGKW---K---EVEELLSAVLDKGLLLDSF 326 (440)
Q Consensus 281 -----~~~~~~--------------------~~~---~~~~~~l~~~~~~~~~~---~---~a~~~~~~~~~~~~~~~~~ 326 (440)
...+.. .|+ ......+..-.-+.+.. + -+.+.+-.-.+. ..+..
T Consensus 699 e~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl--~~~~~ 776 (1238)
T KOG1127|consen 699 ESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSL--AIHMY 776 (1238)
T ss_pred HHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHH--hhccc
Confidence 222111 122 11111111111111111 1 011111111111 11233
Q ss_pred hhHHHHHHHHc--------CCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHH
Q 047359 327 CCSSLMEYYCS--------NRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFV 398 (440)
Q Consensus 327 ~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 398 (440)
+|..+...|.+ ..+...|+..+.+.++..-. +..+|+.|.-. ...|++.-|.--|-+-....|....+|.
T Consensus 777 ~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~an-n~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~ 854 (1238)
T KOG1127|consen 777 PWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCAN-NEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWL 854 (1238)
T ss_pred hHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhc-cHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhhee
Confidence 44444443332 12345788888888776433 67788887766 6678888888888888888888888999
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHHCCCCCCH
Q 047359 399 IVVSRLCHLKELRKAMKNHDEMLKMGHKPDE 429 (440)
Q Consensus 399 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 429 (440)
.+...+....+++-|...|...+. +.|+.
T Consensus 855 NlgvL~l~n~d~E~A~~af~~~qS--LdP~n 883 (1238)
T KOG1127|consen 855 NLGVLVLENQDFEHAEPAFSSVQS--LDPLN 883 (1238)
T ss_pred ccceeEEecccHHHhhHHHHhhhh--cCchh
Confidence 999999999999999999998876 55654
No 127
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.78 E-value=3.2e-07 Score=68.89 Aligned_cols=123 Identities=12% Similarity=-0.034 Sum_probs=97.3
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhcc
Q 047359 276 GLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLK 355 (440)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 355 (440)
.+++...+. .|+. +..+...+...|++++|...|+......+. +...+..+..++...|++++|...|++.....
T Consensus 14 ~~~~~al~~--~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLSV--DPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHc--CHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 345555543 2433 445667778889999999999998887654 77788888889999999999999999999865
Q ss_pred CCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHH
Q 047359 356 GSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRL 404 (440)
Q Consensus 356 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 404 (440)
+. +...+..+..++...|+.++|+..|+...+..|.++..+.....+.
T Consensus 89 p~-~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 89 AS-HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred CC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 43 7788889999999999999999999999998888777776655544
No 128
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.74 E-value=1.8e-05 Score=75.67 Aligned_cols=238 Identities=10% Similarity=0.076 Sum_probs=130.6
Q ss_pred ChHhHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChh-hHHHHHHHHHhcCChHHHHHHHhcccCCchhHHHHHHHHHh
Q 047359 46 AVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKF-TWSLVAQILCRSGKFEVVLGLLDSGIYSSVMYNLVIDFYSK 124 (440)
Q Consensus 46 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~li~~~~~ 124 (440)
+...+..|+..+...+++++|.++.+...+. .|+.. .|-.+...+...++.+.+..+ .++.....
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv------------~~l~~~~~ 95 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL------------NLIDSFSQ 95 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh------------hhhhhccc
Confidence 4566777777777778888888887766654 34432 333333355555554444332 33344444
Q ss_pred cCChhHHHHHHHHHhcCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCcccccchHHHHHHHhhcCcHHHH
Q 047359 125 KGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAA 204 (440)
Q Consensus 125 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 204 (440)
..++.-+..+...|.. ..-+...+..+..+|-+.|+.+++..+++++++.. |++ +.+.+.+...|... ++++|
T Consensus 96 ~~~~~~ve~~~~~i~~---~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D--~~n-~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 96 NLKWAIVEHICDKILL---YGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD--RDN-PEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred ccchhHHHHHHHHHHh---hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--ccc-HHHHHHHHHHHHHh-hHHHH
Confidence 4444334444444433 22344466677777777788888888888777765 443 67777777777777 77777
Q ss_pred HHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 047359 205 EMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVER 284 (440)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 284 (440)
.+++.+.... +...+++..+.+++..+....+. +...+..+.+....+-
T Consensus 169 ~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~~i~~ki~~~~--------------- 217 (906)
T PRK14720 169 ITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-DFDFFLRIERKVLGHR--------------- 217 (906)
T ss_pred HHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-cchHHHHHHHHHHhhh---------------
Confidence 7777666543 44455666666666666654322 2222222221111110
Q ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHH
Q 047359 285 GYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYC 336 (440)
Q Consensus 285 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 336 (440)
+..--..++-.+-..|...++++++..+++.+.+.... |.....-++..|.
T Consensus 218 ~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 218 EFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred ccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 11112223334444555556666666666666655443 4444555555443
No 129
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.72 E-value=4.6e-06 Score=66.18 Aligned_cols=160 Identities=13% Similarity=-0.007 Sum_probs=124.3
Q ss_pred HHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcC
Q 047359 224 GCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGK 303 (440)
Q Consensus 224 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 303 (440)
..+-..+...|+-+.+..+........ ..|.......+....+.|++..|...+++..... ++|...|+.+..+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 555666777788777777776654432 2355566668888888999999999999888764 67888999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHH
Q 047359 304 GKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIF 383 (440)
Q Consensus 304 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 383 (440)
|+.+.|..-|.+..+..+. ++...+.+...|.-.|+.+.|..++......+.. |..+-..+.......|++++|..+.
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhc
Confidence 9999999999988887554 6677788888888889999999998888876443 6677777888888899999998876
Q ss_pred HHHH
Q 047359 384 DYMK 387 (440)
Q Consensus 384 ~~~~ 387 (440)
..-.
T Consensus 226 ~~e~ 229 (257)
T COG5010 226 VQEL 229 (257)
T ss_pred cccc
Confidence 5433
No 130
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.71 E-value=5.3e-05 Score=65.77 Aligned_cols=147 Identities=16% Similarity=0.015 Sum_probs=90.7
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHH
Q 047359 265 LCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKA 344 (440)
Q Consensus 265 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 344 (440)
+...|++++|+..+..+.... +-|..........+.+.++.++|.+.++++....+. .....-.+..+|.+.|++.+|
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHhcCChHHH
Confidence 345667777777777766542 333444445556666777777777777777765322 244455566677777777777
Q ss_pred HHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcccHHHHHHHHHHHHHCC
Q 047359 345 IALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLKELRKAMKNHDEMLKMG 424 (440)
Q Consensus 345 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 424 (440)
+.+++........ |+..|..|..+|...|+..++..... ..+...|+++.|...+....+.
T Consensus 394 i~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~~a~~A~A-----------------E~~~~~G~~~~A~~~l~~A~~~- 454 (484)
T COG4783 394 IRILNRYLFNDPE-DPNGWDLLAQAYAELGNRAEALLARA-----------------EGYALAGRLEQAIIFLMRASQQ- 454 (484)
T ss_pred HHHHHHHhhcCCC-CchHHHHHHHHHHHhCchHHHHHHHH-----------------HHHHhCCCHHHHHHHHHHHHHh-
Confidence 7777777665443 66677777777777777666654432 3345567777777777777663
Q ss_pred CCCCHHHH
Q 047359 425 HKPDEATY 432 (440)
Q Consensus 425 ~~p~~~t~ 432 (440)
..++..+|
T Consensus 455 ~~~~~~~~ 462 (484)
T COG4783 455 VKLGFPDW 462 (484)
T ss_pred ccCCcHHH
Confidence 23444433
No 131
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.66 E-value=2.4e-05 Score=73.96 Aligned_cols=146 Identities=10% Similarity=-0.044 Sum_probs=117.4
Q ss_pred CCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHH
Q 047359 218 LQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFV 297 (440)
Q Consensus 218 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 297 (440)
.++..+..|.....+.|.+++|..+++...+..+. +......+...+.+.+++++|....+...... +-+......+.
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a 161 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEA 161 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHH
Confidence 36778888889999999999999999999887543 45667778888999999999999999998874 34556677777
Q ss_pred HHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHH
Q 047359 298 ASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLL 367 (440)
Q Consensus 298 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 367 (440)
.++.+.|++++|..+|+++...++. +..++..+...+...|+.++|...|++..+. ..|....|+.++
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~ 229 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRL 229 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHH
Confidence 8888899999999999999885443 5778888889999999999999999999875 233445555544
No 132
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.65 E-value=4e-05 Score=61.05 Aligned_cols=150 Identities=14% Similarity=0.111 Sum_probs=75.2
Q ss_pred HHHhhcCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----c
Q 047359 193 QKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCK----E 268 (440)
Q Consensus 193 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 268 (440)
..|++.|++++|++...... +......=+..+.+..+.+.|.+.+++|.+.. +..|.+.|.+++.+ .
T Consensus 116 ~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~gg 186 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGG 186 (299)
T ss_pred HHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccc
Confidence 34455555555555554411 12222222334455556666666666665532 34455545444432 3
Q ss_pred CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCc-HHHHHHH
Q 047359 269 HQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQ-IDKAIAL 347 (440)
Q Consensus 269 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~ 347 (440)
+...+|.-+|+++.++ .+|+..+.+....++...|++++|..++++....... ++.+...++-.-...|. .+-..+.
T Consensus 187 ek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~ 264 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVTERN 264 (299)
T ss_pred hhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHHHH
Confidence 3456666666666553 3556666666666666666666666666666655443 34444333333333333 3333444
Q ss_pred HHHHHh
Q 047359 348 HIKIEK 353 (440)
Q Consensus 348 ~~~~~~ 353 (440)
+.+++.
T Consensus 265 l~QLk~ 270 (299)
T KOG3081|consen 265 LSQLKL 270 (299)
T ss_pred HHHHHh
Confidence 455544
No 133
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.60 E-value=4.5e-05 Score=66.16 Aligned_cols=121 Identities=16% Similarity=0.144 Sum_probs=106.4
Q ss_pred HHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcC-HHhHHHHHHHHHhcCcHH
Q 047359 299 SQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLD-VATYDVLLDGLFKDGRME 377 (440)
Q Consensus 299 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 377 (440)
.+...|++++|+..++.+....+. |+..+......+...++.++|.+.++++.... |+ ....-.+..++.+.|+.+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~~P~-N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAAQPD-NPYYLELAGDILLEANKAKEAIERLKKALALD--PNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHHHHHHhcCChH
Confidence 455679999999999999887543 66677777889999999999999999999864 44 667778899999999999
Q ss_pred HHHHHHHHHHHcCCCchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Q 047359 378 EAVRIFDYMKELKVVSSSSFVIVVSRLCHLKELRKAMKNHDEMLK 422 (440)
Q Consensus 378 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 422 (440)
+|+.+++......+.++..|..|..+|...|+..++.....++..
T Consensus 392 eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 392 EAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred HHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998887765
No 134
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.57 E-value=0.00012 Score=58.00 Aligned_cols=201 Identities=15% Similarity=0.051 Sum_probs=138.3
Q ss_pred cCcHHHHHHHHHHHHhc---C-CCCCHH-hHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChH
Q 047359 198 MGKTYAAEMIFKRACDE---K-IELQDD-TCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPE 272 (440)
Q Consensus 198 ~~~~~~a~~~~~~~~~~---~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 272 (440)
..+.++..+++..+... + ..++.. .|..+.-+....|+.+.|...++.+...-+ -+...-..-.-.+-..|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp-~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFP-GSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCC-CChhHHHHHHHHHHHhhchh
Confidence 45778888888877542 3 444544 344555666778889999999998877642 22222222223345678899
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHH
Q 047359 273 EVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIE 352 (440)
Q Consensus 273 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 352 (440)
+|.++++.+.+.+ +.|..++-.=+...-..|+.-+|++-+.+..+.-+ .|...|..+...|...|++++|.-.++++.
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~-~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFM-NDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 9999999988875 45566666555556666777788888888877643 488899999999999999999999999988
Q ss_pred hccCCcCHHhHHHHHHHHHhcC---cHHHHHHHHHHHHHcCCCchhhHHHHHH
Q 047359 353 KLKGSLDVATYDVLLDGLFKDG---RMEEAVRIFDYMKELKVVSSSSFVIVVS 402 (440)
Q Consensus 353 ~~~~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 402 (440)
-..+. ++..+..+...+.-.| +.+.|.+.|.+..+..+.+...+..+..
T Consensus 182 l~~P~-n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~l 233 (289)
T KOG3060|consen 182 LIQPF-NPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYL 233 (289)
T ss_pred HcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHH
Confidence 75332 5555666666654433 5677888888888876655544444433
No 135
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.55 E-value=0.00019 Score=56.94 Aligned_cols=192 Identities=14% Similarity=0.088 Sum_probs=145.9
Q ss_pred hcCChhhHHHHHHHHHhc---C-CCCcccccchHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhcc
Q 047359 160 RYEKTEVSDRIVGLMVEK---K-LLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGR 235 (440)
Q Consensus 160 ~~~~~~~a~~~~~~~~~~---~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 235 (440)
...+.++..+++.+++.. | ..++. ...|..++-+....|+.+.|...++.+.+.-+. +..+-..-.-.+-..|+
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~-w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~-S~RV~~lkam~lEa~~~ 101 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEI-WTLYEQVFIAALDTGRDDLAQKCINQLRDRFPG-SKRVGKLKAMLLEATGN 101 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchH-HHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHhhc
Confidence 346789999999998863 3 33442 456777888889999999999999999887532 22232222233455799
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHH
Q 047359 236 VKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSA 315 (440)
Q Consensus 236 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 315 (440)
+++|.++|+.+.+.++ .|..++..=+...-..|+.-+|++-+....+. +..|...|.-+...|...|++++|.-.+++
T Consensus 102 ~~~A~e~y~~lL~ddp-t~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE 179 (289)
T KOG3060|consen 102 YKEAIEYYESLLEDDP-TDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEE 179 (289)
T ss_pred hhhHHHHHHHHhccCc-chhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 9999999999999874 37777777777777788888999988888876 577999999999999999999999999999
Q ss_pred HHhcCCCCchhhhHHHHHHHHcCC---cHHHHHHHHHHHHhccC
Q 047359 316 VLDKGLLLDSFCCSSLMEYYCSNR---QIDKAIALHIKIEKLKG 356 (440)
Q Consensus 316 ~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~ 356 (440)
+.-..+. ++..+..+...+...| +.+.|.+.|.+..+...
T Consensus 180 ~ll~~P~-n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 180 LLLIQPF-NPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 9876433 5555666666554443 57778899999888643
No 136
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.52 E-value=5.7e-06 Score=72.16 Aligned_cols=124 Identities=15% Similarity=0.136 Sum_probs=86.0
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHh
Q 047359 293 LSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFK 372 (440)
Q Consensus 293 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 372 (440)
...|+..+...++++.|..+++++.+.. |+ ....+++.+...++-.+|.+++.+..+.... +...+..-...|.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHh
Confidence 3345555555677777777777777653 33 3344666676777777777777777754332 55555555666777
Q ss_pred cCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcccHHHHHHHHHHHH
Q 047359 373 DGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLKELRKAMKNHDEML 421 (440)
Q Consensus 373 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 421 (440)
.++++.|.++.+++.+..|.+-.+|..|..+|.+.|+++.|+..++.+-
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 7888888888888887777777788888888888888888877777654
No 137
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.47 E-value=1e-05 Score=60.41 Aligned_cols=102 Identities=16% Similarity=0.136 Sum_probs=72.7
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHH
Q 047359 291 MELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGL 370 (440)
Q Consensus 291 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 370 (440)
.....+...+...|++++|...++.+...++. +...+..+...+...|++++|...+++..+.+.. +...+..+...+
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD-DPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHH
Confidence 44555666667777888888888777765433 6666777777777788888888888877765432 566677777778
Q ss_pred HhcCcHHHHHHHHHHHHHcCCCch
Q 047359 371 FKDGRMEEAVRIFDYMKELKVVSS 394 (440)
Q Consensus 371 ~~~g~~~~a~~~~~~~~~~~~~~~ 394 (440)
...|+++.|...|+...+..+.+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~~p~~~ 119 (135)
T TIGR02552 96 LALGEPESALKALDLAIEICGENP 119 (135)
T ss_pred HHcCCHHHHHHHHHHHHHhccccc
Confidence 888888888888888877766543
No 138
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.43 E-value=1.2e-06 Score=58.98 Aligned_cols=81 Identities=20% Similarity=0.269 Sum_probs=52.5
Q ss_pred CCcHHHHHHHHHHHHhccCC-cCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcccHHHHHHH
Q 047359 338 NRQIDKAIALHIKIEKLKGS-LDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLKELRKAMKN 416 (440)
Q Consensus 338 ~~~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 416 (440)
.|+++.|+.+++++.+.... |+...+..+..+|.+.|++++|..++++ .+.++.+......+..++.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 46677777777777766542 2444555567777777777777777777 444444445555567777777777777777
Q ss_pred HHH
Q 047359 417 HDE 419 (440)
Q Consensus 417 ~~~ 419 (440)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 765
No 139
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.42 E-value=2.4e-05 Score=59.02 Aligned_cols=126 Identities=10% Similarity=0.021 Sum_probs=78.0
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCc--hhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCH--HhHHHHHH
Q 047359 293 LSRFVASQCGKGKWKEVEELLSAVLDKGLLLD--SFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDV--ATYDVLLD 368 (440)
Q Consensus 293 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~--~~~~~l~~ 368 (440)
|..++..+ ..++...+...++.+.+....-. ....-.+...+...|++++|...|+.+......|+. .....|..
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR 93 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 33344343 35677777777777766533211 122333445677778888888888887776533322 23444666
Q ss_pred HHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcccHHHHHHHHHHH
Q 047359 369 GLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLKELRKAMKNHDEM 420 (440)
Q Consensus 369 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 420 (440)
.+...|++++|+..++..... ...+..+......+.+.|++++|...|++.
T Consensus 94 ~~~~~~~~d~Al~~L~~~~~~-~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 94 ILLQQGQYDEALATLQQIPDE-AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHcCCHHHHHHHHHhccCc-chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 777788888888887663221 125556677777888888888888877764
No 140
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.42 E-value=0.0018 Score=60.82 Aligned_cols=394 Identities=13% Similarity=0.052 Sum_probs=202.7
Q ss_pred HccCCcchHHHHHHHHHhcCCccChHhHHHHHHH--HHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHH
Q 047359 23 SHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDA--LYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSGKFEV 100 (440)
Q Consensus 23 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 100 (440)
...+++..|+.-.+.+.+.. |+.. |..++.+ +.+.|+.++|..+++.....+.. |..|...+-.+|.+.|+.++
T Consensus 20 ld~~qfkkal~~~~kllkk~--Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH--PNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC--CCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence 34567777777777776642 4442 3334443 34667777777777766554433 66677777777778888888
Q ss_pred HHHHHhccc---CCchhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCchhhHHHHHHHHHhcCC----------hhhH
Q 047359 101 VLGLLDSGI---YSSVMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEK----------TEVS 167 (440)
Q Consensus 101 a~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~----------~~~a 167 (440)
|..++++.. |+......+..+|.+.+++.+-.+.--++-+ ..+-+...+-++++.....-. ..-|
T Consensus 96 ~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK--~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA 173 (932)
T KOG2053|consen 96 AVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYK--NFPKRAYYFWSVISLILQSIFSENELLDPILLALA 173 (932)
T ss_pred HHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCcccchHHHHHHHHHHhccCCcccccchhHHHH
Confidence 888887776 6655566666677777666554444434432 111233444455554443211 1234
Q ss_pred HHHHHHHHhcCCCCcccccchHHHHHHHhhcCcHHHHHHHHH-HHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHH
Q 047359 168 DRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFK-RACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLI 246 (440)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 246 (440)
.+.++.+.+.+-.... ..-...-...+...|++++|.+++. ...+.-..-+...-+.-+..+...+++.+..++-.++
T Consensus 174 ~~m~~~~l~~~gk~~s-~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 174 EKMVQKLLEKKGKIES-EAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRL 252 (932)
T ss_pred HHHHHHHhccCCccch-HHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 4555555554311110 2222223344556677777777773 3333333334444445556666677777777777777
Q ss_pred HHcCCCCChhhHHHHHHHHH----------------hcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHH---HcCCCHH
Q 047359 247 SERGITVRDSDYYAFVNVLC----------------KEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQ---CGKGKWK 307 (440)
Q Consensus 247 ~~~~~~~~~~~~~~l~~~~~----------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~ 307 (440)
...|.. . |...++... ..+..+...+..++..... ....|-+-+.+. ..-|+.+
T Consensus 253 l~k~~D--d--y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~---~Rgp~LA~lel~kr~~~~gd~e 325 (932)
T KOG2053|consen 253 LEKGND--D--YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSK---SRGPYLARLELDKRYKLIGDSE 325 (932)
T ss_pred HHhCCc--c--hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhccc---ccCcHHHHHHHHHHhcccCChH
Confidence 666532 1 222222111 1111222222222222110 001111111111 1224444
Q ss_pred HHHHH------------------------------HHHHHhcCCCCchh-------hhHHHHHHHHcCC-----cHHHHH
Q 047359 308 EVEEL------------------------------LSAVLDKGLLLDSF-------CCSSLMEYYCSNR-----QIDKAI 345 (440)
Q Consensus 308 ~a~~~------------------------------~~~~~~~~~~~~~~-------~~~~l~~~~~~~~-----~~~~a~ 345 (440)
++... +...... .++.. .+...+..-.-.| ..+.-.
T Consensus 326 e~~~~y~~kfg~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~--~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~ 403 (932)
T KOG2053|consen 326 EMLSYYFKKFGDKPCCAIDLNHYLGHLNIDQLKSLMSKLVLA--DDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSIL 403 (932)
T ss_pred HHHHHHHHHhCCCcHhHhhHHHhhccCCHHHHHHHHHHhhcc--CCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHH
Confidence 43322 2222211 11111 0111111111122 122223
Q ss_pred HHHHHHH---hcc------CCcCHH---------hHHHHHHHHHhcCcHH---HHHHHHHHHHHcCCCchhhHHHHHHHH
Q 047359 346 ALHIKIE---KLK------GSLDVA---------TYDVLLDGLFKDGRME---EAVRIFDYMKELKVVSSSSFVIVVSRL 404 (440)
Q Consensus 346 ~~~~~~~---~~~------~~p~~~---------~~~~l~~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~l~~~~ 404 (440)
.++++.. +.| .-|+.. +.+.|++.|.+.++.. +|+-+++......+.+..+-..+++.|
T Consensus 404 a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY 483 (932)
T KOG2053|consen 404 AYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIY 483 (932)
T ss_pred HHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHH
Confidence 3333322 222 223332 3367778888887754 677777777777777888888999999
Q ss_pred HhcccHHHHHHHHHHHHHCCCCCCHHHH
Q 047359 405 CHLKELRKAMKNHDEMLKMGHKPDEATY 432 (440)
Q Consensus 405 ~~~g~~~~a~~~~~~m~~~~~~p~~~t~ 432 (440)
.-.|-...|.++|+.+--..++-|..-|
T Consensus 484 ~~lGa~p~a~~~y~tLdIK~IQ~DTlgh 511 (932)
T KOG2053|consen 484 SYLGAFPDAYELYKTLDIKNIQTDTLGH 511 (932)
T ss_pred HHhcCChhHHHHHHhcchHHhhhccchH
Confidence 9999999999999988766666665433
No 141
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.39 E-value=4.1e-06 Score=67.87 Aligned_cols=96 Identities=13% Similarity=0.099 Sum_probs=47.3
Q ss_pred HcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHH
Q 047359 301 CGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAV 380 (440)
Q Consensus 301 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 380 (440)
.+.+++.+|+..|.+.++..+. |.+-|..-..+|.+.|.++.|++-.+..+..+.. ...+|..|..+|...|++++|+
T Consensus 92 m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHHHH
Confidence 3445555555555555554333 4444444455555555555555555544443221 2335555555555555555555
Q ss_pred HHHHHHHHcCCCchhhHH
Q 047359 381 RIFDYMKELKVVSSSSFV 398 (440)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~ 398 (440)
+.|++..+.+|.+.....
T Consensus 170 ~aykKaLeldP~Ne~~K~ 187 (304)
T KOG0553|consen 170 EAYKKALELDPDNESYKS 187 (304)
T ss_pred HHHHhhhccCCCcHHHHH
Confidence 555555555544443333
No 142
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.38 E-value=1.1e-05 Score=70.77 Aligned_cols=103 Identities=12% Similarity=-0.026 Sum_probs=77.2
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcH
Q 047359 297 VASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRM 376 (440)
Q Consensus 297 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 376 (440)
...+...|++++|+..|+++....+. +...|..+..+|...|++++|+..++++++.... +...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCCH
Confidence 44555678888888888888876554 6667777777888888888888888888876443 566777788888888888
Q ss_pred HHHHHHHHHHHHcCCCchhhHHHHH
Q 047359 377 EEAVRIFDYMKELKVVSSSSFVIVV 401 (440)
Q Consensus 377 ~~a~~~~~~~~~~~~~~~~~~~~l~ 401 (440)
++|+..|+++.+.++.++.....+.
T Consensus 87 ~eA~~~~~~al~l~P~~~~~~~~l~ 111 (356)
T PLN03088 87 QTAKAALEKGASLAPGDSRFTKLIK 111 (356)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 8888888888888777665544443
No 143
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.33 E-value=2.5e-05 Score=57.78 Aligned_cols=93 Identities=9% Similarity=0.011 Sum_probs=72.1
Q ss_pred HHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcc
Q 047359 329 SSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLK 408 (440)
Q Consensus 329 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 408 (440)
-.+...+...|++++|.++|+.+....+. +..-|..|..++-..|++++|+..|..+...++.++..+..+..++...|
T Consensus 39 Y~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 39 YRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcC
Confidence 34444566788888888888888775443 56667778888888888888888888888888778888888888888888
Q ss_pred cHHHHHHHHHHHHH
Q 047359 409 ELRKAMKNHDEMLK 422 (440)
Q Consensus 409 ~~~~a~~~~~~m~~ 422 (440)
+.+.|.+.|+..+.
T Consensus 118 ~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 118 NVCYAIKALKAVVR 131 (157)
T ss_pred CHHHHHHHHHHHHH
Confidence 88888888887766
No 144
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.30 E-value=6.2e-05 Score=56.80 Aligned_cols=123 Identities=17% Similarity=0.203 Sum_probs=67.3
Q ss_pred HhHHHHHHHHHccCCcchHHHHHHHHHhcCCccC---hHhHHHHHHHHHhccchhHHHHHHHHHHHcCCCCCh--hhHHH
Q 047359 13 DALSLVLDCYSHKGLFMDGLEVYRMMRVYGFVPA---VSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNK--FTWSL 87 (440)
Q Consensus 13 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ 87 (440)
..|..++..+ ..++...+...++.+.+.. +.+ ....-.+...+...|++++|...|+........|+. .....
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLR 90 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 3455555555 3666777777777777653 222 122223445566677777777777777765422221 23344
Q ss_pred HHHHHHhcCChHHHHHHHhccc---CCchhHHHHHHHHHhcCChhHHHHHHHH
Q 047359 88 VAQILCRSGKFEVVLGLLDSGI---YSSVMYNLVIDFYSKKGDFGAAFDRLNE 137 (440)
Q Consensus 88 l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~ 137 (440)
|...+...|++++|+..++... .....+.....++.+.|+.++|...|+.
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 5555566666666666665544 2222344455555666666666655554
No 145
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.28 E-value=2.1e-05 Score=54.53 Aligned_cols=94 Identities=19% Similarity=0.240 Sum_probs=69.4
Q ss_pred hHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhc
Q 047359 328 CSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHL 407 (440)
Q Consensus 328 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 407 (440)
+..+...+...|++++|...++++.+.... +...+..+...+...|+++.|.+.++......+.+...+..+...+...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 344556667778888888888877765332 3456667777777888888888888888777766667777788888888
Q ss_pred ccHHHHHHHHHHHHH
Q 047359 408 KELRKAMKNHDEMLK 422 (440)
Q Consensus 408 g~~~~a~~~~~~m~~ 422 (440)
|++++|...+++..+
T Consensus 82 ~~~~~a~~~~~~~~~ 96 (100)
T cd00189 82 GKYEEALEAYEKALE 96 (100)
T ss_pred HhHHHHHHHHHHHHc
Confidence 888888888877765
No 146
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.26 E-value=6e-05 Score=65.93 Aligned_cols=126 Identities=17% Similarity=0.112 Sum_probs=84.4
Q ss_pred hHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 047359 222 TCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQC 301 (440)
Q Consensus 222 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 301 (440)
....++..+...++++.|..+++++.+.. |+ ....++..+...++..+|.+++++..+.. +.+......-...+.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34445566666777888888888877765 32 34456666666777777777777777542 334555555566677
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHh
Q 047359 302 GKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEK 353 (440)
Q Consensus 302 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 353 (440)
+.++++.|.++.+++....+. +..+|..|..+|...|+++.|+..++.+.-
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 777777787777777776433 555777777778888888877777665543
No 147
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.26 E-value=2.1e-06 Score=46.62 Aligned_cols=34 Identities=26% Similarity=0.559 Sum_probs=30.2
Q ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHCCCCCCH
Q 047359 396 SFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDE 429 (440)
Q Consensus 396 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 429 (440)
+|+.++.+|++.|++++|.++|++|.+.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 6888999999999999999999999999998873
No 148
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.26 E-value=1.8e-06 Score=46.87 Aligned_cols=33 Identities=27% Similarity=0.558 Sum_probs=20.0
Q ss_pred hHHHHHHHHHhccchhHHHHHHHHHHHcCCCCC
Q 047359 49 ACNALLDALYRQNEIRLASCLYGAMVRDGVSPN 81 (440)
Q Consensus 49 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 81 (440)
+||.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 456666666666666666666666666665554
No 149
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.23 E-value=6.7e-05 Score=54.52 Aligned_cols=96 Identities=13% Similarity=0.059 Sum_probs=56.9
Q ss_pred hHHHHHHHHcCCcHHHHHHHHHHHHhccCC--cCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCC---chhhHHHHHH
Q 047359 328 CSSLMEYYCSNRQIDKAIALHIKIEKLKGS--LDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVV---SSSSFVIVVS 402 (440)
Q Consensus 328 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~~ 402 (440)
+..+...+.+.|++++|.+.+..+.+.... .....+..+..++.+.|+++.|...|+.+....|. .+.++..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 344555566666666666666666654221 01234455666666666677777766666655444 2345666666
Q ss_pred HHHhcccHHHHHHHHHHHHHC
Q 047359 403 RLCHLKELRKAMKNHDEMLKM 423 (440)
Q Consensus 403 ~~~~~g~~~~a~~~~~~m~~~ 423 (440)
++.+.|++++|...++++.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 666667777777777666663
No 150
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.22 E-value=2.6e-06 Score=45.87 Aligned_cols=32 Identities=34% Similarity=0.448 Sum_probs=18.8
Q ss_pred hHHHHHHHHHhccchhHHHHHHHHHHHcCCCC
Q 047359 49 ACNALLDALYRQNEIRLASCLYGAMVRDGVSP 80 (440)
Q Consensus 49 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 80 (440)
+|+.++.+|++.|+++.|.++|+.|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 55556666666666666666666665555554
No 151
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.21 E-value=6.6e-06 Score=52.80 Aligned_cols=65 Identities=17% Similarity=0.351 Sum_probs=51.7
Q ss_pred HhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcccHHHHHHHHHHHHHCCCCCCHHHHHHHhh
Q 047359 371 FKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDEATYKQVIS 437 (440)
Q Consensus 371 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~ 437 (440)
.+.|++++|+++|+++.+..|.+..++..++.+|.+.|++++|.++++++.. ..|+...|..++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~--~~~~~~~~~~l~a 66 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK--QDPDNPEYQQLLA 66 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG--GGTTHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCHHHHHHHHh
Confidence 4678888888888888888888888888888888888888888888888887 4677776666653
No 152
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.20 E-value=9.8e-06 Score=51.41 Aligned_cols=62 Identities=18% Similarity=0.320 Sum_probs=48.3
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcccHHHHHHHHHHHHHCCCCCCH
Q 047359 366 LLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDE 429 (440)
Q Consensus 366 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 429 (440)
+...+.+.|++++|.+.|+.+.+..|.++.++..+..++.+.|++++|...|+++++ ..|+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~--~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE--LDPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCC
Confidence 455677888888888888888888877888888888888888888888888888876 35653
No 153
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.19 E-value=0.0001 Score=53.56 Aligned_cols=104 Identities=15% Similarity=0.004 Sum_probs=62.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCCC--CchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCc--CHHhHHHHHH
Q 047359 293 LSRFVASQCGKGKWKEVEELLSAVLDKGLL--LDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSL--DVATYDVLLD 368 (440)
Q Consensus 293 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~ 368 (440)
+..+...+...|++++|.+.+..+...... .....+..+..++...|+++.|...++.+....+.. ....+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 444555566667777777777666654321 012344556666777777777777777766543221 2345666666
Q ss_pred HHHhcCcHHHHHHHHHHHHHcCCCchhh
Q 047359 369 GLFKDGRMEEAVRIFDYMKELKVVSSSS 396 (440)
Q Consensus 369 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 396 (440)
++.+.|+.++|.+.++++.+..|.+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 6777777777777777777766655443
No 154
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.17 E-value=6.1e-05 Score=63.66 Aligned_cols=128 Identities=10% Similarity=0.016 Sum_probs=60.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHH-HHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHH
Q 047359 293 LSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEY-YCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLF 371 (440)
Q Consensus 293 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 371 (440)
|..+++...+.+..+.|..+|.+..+.+. .+...|...... |...++.+.|.++|+...+. ...+...|...++.+.
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHH
Confidence 44444455555555555555555553221 122223322222 22234444455555555544 2224455555555555
Q ss_pred hcCcHHHHHHHHHHHHHcCCCc---hhhHHHHHHHHHhcccHHHHHHHHHHHHH
Q 047359 372 KDGRMEEAVRIFDYMKELKVVS---SSSFVIVVSRLCHLKELRKAMKNHDEMLK 422 (440)
Q Consensus 372 ~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 422 (440)
+.|+.+.|..+|++....-+.. ...|...+..-.+.|+.+.+..+.+++.+
T Consensus 82 ~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 82 KLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555655555555442221 23555555555555666666665555555
No 155
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.15 E-value=4.9e-06 Score=44.74 Aligned_cols=33 Identities=21% Similarity=0.334 Sum_probs=25.8
Q ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHCCCCC
Q 047359 395 SSFVIVVSRLCHLKELRKAMKNHDEMLKMGHKP 427 (440)
Q Consensus 395 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p 427 (440)
.+|+.++.+|.+.|+++.|.++|++|.+.|+.|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467778888888888888888888888777776
No 156
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.14 E-value=1.9e-05 Score=50.79 Aligned_cols=64 Identities=20% Similarity=0.317 Sum_probs=54.4
Q ss_pred CHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcc-cHHHHHHHHHHHHH
Q 047359 359 DVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLK-ELRKAMKNHDEMLK 422 (440)
Q Consensus 359 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~ 422 (440)
+..+|..+...+...|++++|+..|++..+.++.++.+|..+..++...| ++++|++.+++.++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 45678888888888888999998888888888888888888888888888 78888888888776
No 157
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=0.00023 Score=58.33 Aligned_cols=122 Identities=13% Similarity=0.124 Sum_probs=91.0
Q ss_pred HHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcC---cHHHHHHHHHHHH
Q 047359 311 ELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDG---RMEEAVRIFDYMK 387 (440)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~ 387 (440)
.-++.-...++. |...|-.|...|...|+.+.|..-|.+..+...+ ++..+..+..++.... ...++..+|+++.
T Consensus 143 a~Le~~L~~nP~-d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al 220 (287)
T COG4235 143 ARLETHLQQNPG-DAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARALLRQAL 220 (287)
T ss_pred HHHHHHHHhCCC-CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 334444444444 7888888999999999999999999888876333 6666767766655432 3567888899999
Q ss_pred HcCCCchhhHHHHHHHHHhcccHHHHHHHHHHHHHCCCCCCHHHHHHHh
Q 047359 388 ELKVVSSSSFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDEATYKQVI 436 (440)
Q Consensus 388 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll 436 (440)
..++.++.+...|...+...|++.+|...|+.|++. -|....+..+|
T Consensus 221 ~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~--lp~~~~rr~~i 267 (287)
T COG4235 221 ALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL--LPADDPRRSLI 267 (287)
T ss_pred hcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--CCCCCchHHHH
Confidence 988888888888888999999999999999999884 45555555544
No 158
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.11 E-value=0.0012 Score=52.75 Aligned_cols=134 Identities=13% Similarity=0.086 Sum_probs=73.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHH----
Q 047359 258 YYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLME---- 333 (440)
Q Consensus 258 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~---- 333 (440)
.+.++..+.-.|.+.-....+++.++...+.+......|.+.-.+.|+.+.|...|+...+..-..+..+.+.++.
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 3445555555566666666666666655455555666666666666666666666666654333334444443332
Q ss_pred -HHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCC
Q 047359 334 -YYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVV 392 (440)
Q Consensus 334 -~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 392 (440)
.|.-.+++..|...+.++...+.. |+...|.-.-+..-.|+...|++.++.|.+..|.
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred hheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 344455666666666666554332 3333333333333456666666666666665544
No 159
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.09 E-value=1.6e-05 Score=53.42 Aligned_cols=81 Identities=23% Similarity=0.301 Sum_probs=53.8
Q ss_pred CCCHHHHHHHHHHHHhcCCC-CchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHH
Q 047359 303 KGKWKEVEELLSAVLDKGLL-LDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVR 381 (440)
Q Consensus 303 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 381 (440)
.|+++.|+.+++++.+.... ++...+..+..+|.+.|++++|..++++ .+.+.. +......+..+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHH
Confidence 46778888888888766442 2444555577888888888888888877 332222 33444455777888888888888
Q ss_pred HHHH
Q 047359 382 IFDY 385 (440)
Q Consensus 382 ~~~~ 385 (440)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8775
No 160
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.08 E-value=0.00017 Score=63.27 Aligned_cols=92 Identities=9% Similarity=-0.080 Sum_probs=66.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcH
Q 047359 262 VNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQI 341 (440)
Q Consensus 262 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 341 (440)
...+...|++++|+..++.+++.. +.+...|..+..++...|++++|+..++++...... +...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCCH
Confidence 445566778888888888877754 345566777777777788888888888888776543 556677777777788888
Q ss_pred HHHHHHHHHHHhcc
Q 047359 342 DKAIALHIKIEKLK 355 (440)
Q Consensus 342 ~~a~~~~~~~~~~~ 355 (440)
++|+..|++..+..
T Consensus 87 ~eA~~~~~~al~l~ 100 (356)
T PLN03088 87 QTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHhC
Confidence 88888888877743
No 161
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.08 E-value=0.00012 Score=64.46 Aligned_cols=118 Identities=8% Similarity=0.037 Sum_probs=71.4
Q ss_pred ccchHHHHHHHhhcCcHHHHHHHHHHHHhc--CCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 047359 185 LSGNDYVIQKLSDMGKTYAAEMIFKRACDE--KIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFV 262 (440)
Q Consensus 185 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 262 (440)
......+++.+....+.+.+..++.+.... ....-+.|..+++..|.+.|..+.++.+++.=..-|+-||..+++.+|
T Consensus 66 ~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lm 145 (429)
T PF10037_consen 66 SLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLM 145 (429)
T ss_pred HHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHH
Confidence 334455556666666666666666666553 222223344566666777777777777666666667767777777777
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHc
Q 047359 263 NVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCG 302 (440)
Q Consensus 263 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 302 (440)
..+.+.|++..|.++...|...+...+..|+..-+.+|.+
T Consensus 146 d~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 146 DHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 7777777777777666666655555555555544444443
No 162
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.07 E-value=0.011 Score=55.91 Aligned_cols=192 Identities=10% Similarity=0.007 Sum_probs=127.9
Q ss_pred HHccCCcchHHHHHHHHHhcCCccChHhHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChH--
Q 047359 22 YSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSGKFE-- 99 (440)
Q Consensus 22 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-- 99 (440)
+.|.|+.++|..+++.....+.. |..+...+-.+|...++.++|..+|++..+. .|+......+..+|.|.+.+.
T Consensus 53 l~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~q 129 (932)
T KOG2053|consen 53 LFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQ 129 (932)
T ss_pred HHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999988876643 8889999999999999999999999999876 577777888888899888664
Q ss_pred --HHHHHHhcccCCchhHHHHHHHHHhcC-C---------hhHHHHHHHHHhcCCCCCCchhhHHHHHHHHHhcCChhhH
Q 047359 100 --VVLGLLDSGIYSSVMYNLVIDFYSKKG-D---------FGAAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVS 167 (440)
Q Consensus 100 --~a~~~~~~~~~~~~~~~~li~~~~~~~-~---------~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 167 (440)
.|.++++..+.+...+=+.++...+.. . ..-|.+.++.+.+..|.--+..-...-...+-..|++++|
T Consensus 130 Qkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~ea 209 (932)
T KOG2053|consen 130 QKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEA 209 (932)
T ss_pred HHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHH
Confidence 567777766655554444445444431 1 2235556666665333211222222223344567889999
Q ss_pred HHHHHHHHhcCCCCcccccchHHHHHHHhhcCcHHHHHHHHHHHHhcCCC
Q 047359 168 DRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIE 217 (440)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 217 (440)
..++..=......+-+ ...-+.-+..+...+++.+..++-.++...+..
T Consensus 210 l~~l~~~la~~l~~~~-~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~D 258 (932)
T KOG2053|consen 210 LEFLAITLAEKLTSAN-LYLENKKLDLLKLLNRWQELFELSSRLLEKGND 258 (932)
T ss_pred HHHHHHHHHHhccccc-hHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCc
Confidence 9888433222222210 333345667778888888888888888777654
No 163
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.05 E-value=7.8e-05 Score=60.70 Aligned_cols=100 Identities=17% Similarity=0.084 Sum_probs=81.7
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHH
Q 047359 264 VLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDK 343 (440)
Q Consensus 264 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 343 (440)
-+.+.+++.+|+..|...++.. +.|.+.|..-..+|++.|.++.|++-.+..+..+.. ...+|..|..+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHH
Confidence 4667889999999999999864 456777888889999999999999998888886544 56789999999999999999
Q ss_pred HHHHHHHHHhccCCcCHHhHHHHH
Q 047359 344 AIALHIKIEKLKGSLDVATYDVLL 367 (440)
Q Consensus 344 a~~~~~~~~~~~~~p~~~~~~~l~ 367 (440)
|++.|++.++ +.|+-.+|-.=+
T Consensus 168 A~~aykKaLe--ldP~Ne~~K~nL 189 (304)
T KOG0553|consen 168 AIEAYKKALE--LDPDNESYKSNL 189 (304)
T ss_pred HHHHHHhhhc--cCCCcHHHHHHH
Confidence 9999998887 566666664433
No 164
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.05 E-value=0.00012 Score=64.45 Aligned_cols=124 Identities=19% Similarity=0.157 Sum_probs=92.2
Q ss_pred CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhh
Q 047359 250 GITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVER--GYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFC 327 (440)
Q Consensus 250 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 327 (440)
+.+.+......+++.+....+.+.+..++...... ....-..|..++++.|.+.|..+.+..+++.=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 44456667777888887777888888888777654 2222334556888888888888888888888888888888888
Q ss_pred hHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhc
Q 047359 328 CSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKD 373 (440)
Q Consensus 328 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 373 (440)
++.++..+.+.|++..|.++...|...+.-.+..|+..-+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888888887776655666665555555554
No 165
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.04 E-value=0.0001 Score=50.95 Aligned_cols=95 Identities=19% Similarity=0.170 Sum_probs=56.0
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhc
Q 047359 294 SRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKD 373 (440)
Q Consensus 294 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 373 (440)
..+...+...|++++|...++...+.... +...+..+...+...+++++|.+.++...+.... +..++..+...+...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 81 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHHH
Confidence 33444555566666666666666554322 3344555566666666777777776666654322 334566666666677
Q ss_pred CcHHHHHHHHHHHHHcC
Q 047359 374 GRMEEAVRIFDYMKELK 390 (440)
Q Consensus 374 g~~~~a~~~~~~~~~~~ 390 (440)
|+++.|...+....+..
T Consensus 82 ~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 82 GKYEEALEAYEKALELD 98 (100)
T ss_pred HhHHHHHHHHHHHHccC
Confidence 77777777766665543
No 166
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.02 E-value=0.0001 Score=50.56 Aligned_cols=76 Identities=13% Similarity=0.179 Sum_probs=40.0
Q ss_pred HHHHHhhcCcHHHHHHHHHHHHhcCC-CCCHHhHHHHHHHHhhhc--------cHHHHHHHHHHHHHcCCCCChhhHHHH
Q 047359 191 VIQKLSDMGKTYAAEMIFKRACDEKI-ELQDDTCGCMLKALSKEG--------RVKEAIQIYHLISERGITVRDSDYYAF 261 (440)
Q Consensus 191 l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~l 261 (440)
.|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. ++-..+.+|+.|...+++|+..+|+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 34444444555555555555555555 555555555555544321 233444555555555555555555555
Q ss_pred HHHHH
Q 047359 262 VNVLC 266 (440)
Q Consensus 262 ~~~~~ 266 (440)
+..+.
T Consensus 111 l~~Ll 115 (120)
T PF08579_consen 111 LGSLL 115 (120)
T ss_pred HHHHH
Confidence 55543
No 167
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.02 E-value=0.0033 Score=51.87 Aligned_cols=57 Identities=12% Similarity=0.011 Sum_probs=46.8
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHHcCCC---chhhHHHHHHHHHhcccHHHHHHHHHHHH
Q 047359 365 VLLDGLFKDGRMEEAVRIFDYMKELKVV---SSSSFVIVVSRLCHLKELRKAMKNHDEML 421 (440)
Q Consensus 365 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 421 (440)
.+...|.+.|.+..|..-++.+.+.-|. .+.+...++.+|...|..++|......+.
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 5566788899999999999999987766 55678888899999999999988776554
No 168
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.01 E-value=0.00023 Score=55.50 Aligned_cols=100 Identities=12% Similarity=0.037 Sum_probs=49.0
Q ss_pred hHHHHHHHHcCCcHHHHHHHHHHHHhccCCcC--HHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHH
Q 047359 328 CSSLMEYYCSNRQIDKAIALHIKIEKLKGSLD--VATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLC 405 (440)
Q Consensus 328 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 405 (440)
+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...++++.+..+.+...+..+...+.
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 117 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYH 117 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 33344444445555555555555544322211 2344445555555555555555555555544444444444444444
Q ss_pred hccc--------------HHHHHHHHHHHHHCCCCCCH
Q 047359 406 HLKE--------------LRKAMKNHDEMLKMGHKPDE 429 (440)
Q Consensus 406 ~~g~--------------~~~a~~~~~~m~~~~~~p~~ 429 (440)
..|+ +++|.+.+++... ..|+.
T Consensus 118 ~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~--~~p~~ 153 (172)
T PRK02603 118 KRGEKAEEAGDQDEAEALFDKAAEYWKQAIR--LAPNN 153 (172)
T ss_pred HcCChHhHhhCHHHHHHHHHHHHHHHHHHHh--hCchh
Confidence 4443 4566666666665 34553
No 169
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.01 E-value=0.0011 Score=56.43 Aligned_cols=137 Identities=11% Similarity=0.090 Sum_probs=77.2
Q ss_pred HHHHHHcC-CCHHHHHHHHHHHHhc----CC-CCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCC-----cCHH-hH
Q 047359 296 FVASQCGK-GKWKEVEELLSAVLDK----GL-LLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGS-----LDVA-TY 363 (440)
Q Consensus 296 l~~~~~~~-~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----p~~~-~~ 363 (440)
+...|... |++++|.+.|++..+. +- ..-..++..+...+.+.|++++|.++|+++...... .+.. .+
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~ 199 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYF 199 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHH
Confidence 34456566 7888888888777542 20 111335566777888889999999999888764322 1221 22
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHcCCC--c---hhhHHHHHHHHHh--cccHHHHHHHHHHHHHCCCCCCHHHHHHHh
Q 047359 364 DVLLDGLFKDGRMEEAVRIFDYMKELKVV--S---SSSFVIVVSRLCH--LKELRKAMKNHDEMLKMGHKPDEATYKQVI 436 (440)
Q Consensus 364 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~---~~~~~~l~~~~~~--~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll 436 (440)
...+-++...||...|.+.+++.....|. + ......|+.++-. ...+++|+.-|+.+. +.|..--..|+
T Consensus 200 l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~----~ld~w~~~~l~ 275 (282)
T PF14938_consen 200 LKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS----RLDNWKTKMLL 275 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS-------HHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC----ccHHHHHHHHH
Confidence 33344666778899999999888876553 2 2355566666543 234555555555543 24444444443
No 170
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.00 E-value=0.00016 Score=61.21 Aligned_cols=126 Identities=12% Similarity=0.100 Sum_probs=85.4
Q ss_pred HhHHHHHHHHHccCCcchHHHHHHHHHhcCCccChHhHHHHHHH-HHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 047359 13 DALSLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDA-LYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQI 91 (440)
Q Consensus 13 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 91 (440)
.+|-.++....+.+..+.|..+|.+..+.+ ..+...|-..... +...++.+.|.++|+...+. +..+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 467788888888888888888888887543 2233334333333 22246667788888888765 45567777788888
Q ss_pred HHhcCChHHHHHHHhccc---CC----chhHHHHHHHHHhcCChhHHHHHHHHHhc
Q 047359 92 LCRSGKFEVVLGLLDSGI---YS----SVMYNLVIDFYSKKGDFGAAFDRLNEMCN 140 (440)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~---~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 140 (440)
+.+.|+.+.|..+|++.. +. ...|...+..=.+.|+.+.+.++..++.+
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888888888888888776 22 33677778777788888888888877766
No 171
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.00 E-value=0.00023 Score=52.81 Aligned_cols=95 Identities=9% Similarity=-0.006 Sum_probs=75.5
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHh
Q 047359 293 LSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFK 372 (440)
Q Consensus 293 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 372 (440)
.-.+...+...|++++|.++|+.+....+. +..-|-.|..++-..|++++|+..|.......+. |+..+..+..++..
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~ 115 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHH
Confidence 344555566778999999999888876554 6666777777888889999999999988887654 77888888889999
Q ss_pred cCcHHHHHHHHHHHHHc
Q 047359 373 DGRMEEAVRIFDYMKEL 389 (440)
Q Consensus 373 ~g~~~~a~~~~~~~~~~ 389 (440)
.|+.+.|.+.|+.....
T Consensus 116 lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 116 CDNVCYAIKALKAVVRI 132 (157)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 99999999988877764
No 172
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.99 E-value=0.00054 Score=48.98 Aligned_cols=92 Identities=21% Similarity=0.041 Sum_probs=57.2
Q ss_pred HHHHHHcCCcHHHHHHHHHHHHhccCCcC--HHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCC---chhhHHHHHHHHH
Q 047359 331 LMEYYCSNRQIDKAIALHIKIEKLKGSLD--VATYDVLLDGLFKDGRMEEAVRIFDYMKELKVV---SSSSFVIVVSRLC 405 (440)
Q Consensus 331 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~ 405 (440)
...++-..|+.++|+.+|++....|.... ...+-.+...+...|++++|..++++.....|. +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 34455666777777777777777665433 234455666677777777777777777665554 3344444455666
Q ss_pred hcccHHHHHHHHHHHHH
Q 047359 406 HLKELRKAMKNHDEMLK 422 (440)
Q Consensus 406 ~~g~~~~a~~~~~~m~~ 422 (440)
..|+.++|++.+-....
T Consensus 87 ~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALA 103 (120)
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 77777777776655443
No 173
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.99 E-value=0.00014 Score=49.85 Aligned_cols=79 Identities=15% Similarity=0.275 Sum_probs=67.4
Q ss_pred HHHHHHHHccCCcchHHHHHHHHHhcCC-ccChHhHHHHHHHHHhcc--------chhHHHHHHHHHHHcCCCCChhhHH
Q 047359 16 SLVLDCYSHKGLFMDGLEVYRMMRVYGF-VPAVSACNALLDALYRQN--------EIRLASCLYGAMVRDGVSPNKFTWS 86 (440)
Q Consensus 16 ~~li~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~ 86 (440)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +.-..+.+|+.|...+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3456667777999999999999999999 899999999999887652 3556788999999999999999999
Q ss_pred HHHHHHHh
Q 047359 87 LVAQILCR 94 (440)
Q Consensus 87 ~l~~~~~~ 94 (440)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99987764
No 174
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.98 E-value=0.0012 Score=56.16 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=11.0
Q ss_pred HHHHHHhhhccHHHHHHHHHHHHH
Q 047359 225 CMLKALSKEGRVKEAIQIYHLISE 248 (440)
Q Consensus 225 ~l~~~~~~~~~~~~a~~~~~~~~~ 248 (440)
.+...+.+.|++++|.++|++...
T Consensus 160 ~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 160 KAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHH
Confidence 334444445555555555554443
No 175
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.98 E-value=0.00058 Score=62.77 Aligned_cols=62 Identities=16% Similarity=0.195 Sum_probs=34.8
Q ss_pred HHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Q 047359 360 VATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLKELRKAMKNHDEMLK 422 (440)
Q Consensus 360 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 422 (440)
...|..+.-.....|++++|...++++.+.++ +...|..+...+...|+.++|.+.+++...
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34455554444455666666666666655554 344555555556666666666666655554
No 176
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.97 E-value=0.0039 Score=50.05 Aligned_cols=82 Identities=13% Similarity=0.112 Sum_probs=49.1
Q ss_pred HHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCC---chhhHHHHHHHHH
Q 047359 329 SSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVV---SSSSFVIVVSRLC 405 (440)
Q Consensus 329 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~ 405 (440)
..++.-|-...-..+|...+..+.+. =...--.+...|.+.|.+..|..-++.+.+.-|. ...+...++.++.
T Consensus 114 ~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~ 189 (203)
T PF13525_consen 114 EELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYY 189 (203)
T ss_dssp HHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHH
Confidence 33444444444555555555544432 1111123566788888999999888888887766 3356777888888
Q ss_pred hcccHHHHH
Q 047359 406 HLKELRKAM 414 (440)
Q Consensus 406 ~~g~~~~a~ 414 (440)
+.|..+.+.
T Consensus 190 ~l~~~~~a~ 198 (203)
T PF13525_consen 190 KLGLKQAAD 198 (203)
T ss_dssp HTT-HHHHH
T ss_pred HhCChHHHH
Confidence 888776443
No 177
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.94 E-value=0.00067 Score=52.93 Aligned_cols=83 Identities=11% Similarity=0.048 Sum_probs=38.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHH
Q 047359 258 YYAFVNVLCKEHQPEEVCGLLRDVVERGYIPC--AMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYY 335 (440)
Q Consensus 258 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 335 (440)
+..+...+...|++++|...+++..+....+. ...+..+...+.+.|++++|...+++.....+. +...+..+...+
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 116 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 44444455555555555555555554321111 234444445555555555555555555443222 233333344444
Q ss_pred HcCCcH
Q 047359 336 CSNRQI 341 (440)
Q Consensus 336 ~~~~~~ 341 (440)
...|+.
T Consensus 117 ~~~g~~ 122 (172)
T PRK02603 117 HKRGEK 122 (172)
T ss_pred HHcCCh
Confidence 444443
No 178
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=0.0024 Score=54.61 Aligned_cols=276 Identities=12% Similarity=0.021 Sum_probs=149.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhcCCCCCCc-hhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCcccccchHHHHHH
Q 047359 116 NLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPG-FSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQK 194 (440)
Q Consensus 116 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~ 194 (440)
......+.+..++..|+..+....+ .-|+ ..-|..-...+...++++++.--.+.-.+. .|.. .......-++
T Consensus 53 k~~gn~~yk~k~Y~nal~~yt~Ai~---~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~~-~k~~~r~~~c 126 (486)
T KOG0550|consen 53 KEEGNAFYKQKTYGNALKNYTFAID---MCPDNASYYSNRAATLMMLGRFEEALGDARQSVRL--KDGF-SKGQLREGQC 126 (486)
T ss_pred HhhcchHHHHhhHHHHHHHHHHHHH---hCccchhhhchhHHHHHHHHhHhhcccchhhheec--CCCc-cccccchhhh
Confidence 3445677777888888888888876 4454 345556666677777777776555444332 2331 3455556666
Q ss_pred HhhcCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCC-CCChhhHHHH-HHHHHhcCChH
Q 047359 195 LSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGI-TVRDSDYYAF-VNVLCKEHQPE 272 (440)
Q Consensus 195 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l-~~~~~~~~~~~ 272 (440)
+...++..+|.+.++.-. .+ ....++..++....... +|.-.++..+ ..++...|+++
T Consensus 127 ~~a~~~~i~A~~~~~~~~---------~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~ 186 (486)
T KOG0550|consen 127 HLALSDLIEAEEKLKSKQ---------AY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYD 186 (486)
T ss_pred hhhhHHHHHHHHHhhhhh---------hh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccch
Confidence 666666666666665111 00 11112222222222111 1222223222 12344556666
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHH--HHcCCCHHHHHHHHHHHHhcCCCCchhhhHH---H----------HHHHHc
Q 047359 273 EVCGLLRDVVERGYIPCAMELSRFVAS--QCGKGKWKEVEELLSAVLDKGLLLDSFCCSS---L----------MEYYCS 337 (440)
Q Consensus 273 ~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---l----------~~~~~~ 337 (440)
+|..+-..+++.+ ....+...+++ +.-.++.+.+...|++.+..++ +...-.. . ..-..+
T Consensus 187 ~a~~ea~~ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldp--dh~~sk~~~~~~k~le~~k~~gN~~fk 261 (486)
T KOG0550|consen 187 EAQSEAIDILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRLDP--DHQKSKSASMMPKKLEVKKERGNDAFK 261 (486)
T ss_pred hHHHHHHHHHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhccCh--hhhhHHhHhhhHHHHHHHHhhhhhHhh
Confidence 6666655555432 11122222222 2224566666666666655432 2211111 1 112346
Q ss_pred CCcHHHHHHHHHHHHhcc---CCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcccHHHHH
Q 047359 338 NRQIDKAIALHIKIEKLK---GSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLKELRKAM 414 (440)
Q Consensus 338 ~~~~~~a~~~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 414 (440)
.|++..|.+.|.+.+... .+|+...|.....+..+.|+.++|+.-.++..+.++.-...+..-..++.-.++|++|+
T Consensus 262 ~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV 341 (486)
T KOG0550|consen 262 NGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAV 341 (486)
T ss_pred ccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777777777542 34556666666667777778888777777777765444455555556666677777777
Q ss_pred HHHHHHHH
Q 047359 415 KNHDEMLK 422 (440)
Q Consensus 415 ~~~~~m~~ 422 (440)
+-+++..+
T Consensus 342 ~d~~~a~q 349 (486)
T KOG0550|consen 342 EDYEKAMQ 349 (486)
T ss_pred HHHHHHHh
Confidence 77777665
No 179
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.92 E-value=8.4e-05 Score=47.06 Aligned_cols=62 Identities=23% Similarity=0.265 Sum_probs=43.4
Q ss_pred HHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCc
Q 047359 331 LMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVS 393 (440)
Q Consensus 331 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 393 (440)
+...+...|++++|.+.|+++++..+. +...+..+..++...|++++|...|+++.+..|.+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 345667777788888888877776533 66677777777778888888888887777766553
No 180
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.89 E-value=0.00011 Score=47.79 Aligned_cols=66 Identities=17% Similarity=0.281 Sum_probs=51.9
Q ss_pred HHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcccHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 047359 368 DGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDEATYKQV 435 (440)
Q Consensus 368 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~l 435 (440)
..|.+.+++++|.++++.+...+|.++..+.....++.+.|++++|.+.+++..+ ..|+..+...+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~--~~p~~~~~~~~ 68 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALE--LSPDDPDARAL 68 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHH--HCCCcHHHHHH
Confidence 4677788888888888888888888888888888888888888888888888887 45666555444
No 181
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.88 E-value=0.00039 Score=54.03 Aligned_cols=96 Identities=9% Similarity=-0.104 Sum_probs=69.5
Q ss_pred hhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCc--CHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHH
Q 047359 325 SFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSL--DVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVS 402 (440)
Q Consensus 325 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 402 (440)
...+..+...+...|++++|...+++.......| ...++..+...+...|++++|+..+++..+..+.....+..+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 4456666777778888888888888887653332 23477788888888899999999888888876666666777666
Q ss_pred HHH-------hcccHHHHHHHHHHH
Q 047359 403 RLC-------HLKELRKAMKNHDEM 420 (440)
Q Consensus 403 ~~~-------~~g~~~~a~~~~~~m 420 (440)
.+. ..|++++|...+++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 666 777877665555543
No 182
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.87 E-value=0.0068 Score=50.03 Aligned_cols=178 Identities=11% Similarity=-0.012 Sum_probs=101.1
Q ss_pred HHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHh--HHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh-
Q 047359 191 VIQKLSDMGKTYAAEMIFKRACDEKIELQDDT--CGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCK- 267 (440)
Q Consensus 191 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 267 (440)
....+...|++++|.+.|+.+....+.+.... .-.+..++.+.+++++|...+++..+..+.....-+...+.+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~ 117 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNM 117 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhh
Confidence 44445556666666666666666544322111 123455666777777777777777766443333333333333321
Q ss_pred -c---------------CC---hHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhh
Q 047359 268 -E---------------HQ---PEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCC 328 (440)
Q Consensus 268 -~---------------~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 328 (440)
. .+ ..+|...|+.+++. -|+. .-..+|...+..+... =...-
T Consensus 118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S-------------~ya~~A~~rl~~l~~~----la~~e 178 (243)
T PRK10866 118 ALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNS-------------QYTTDATKRLVFLKDR----LAKYE 178 (243)
T ss_pred hcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCC-------------hhHHHHHHHHHHHHHH----HHHHH
Confidence 0 11 12344555555543 2332 2334454444444322 01111
Q ss_pred HHHHHHHHcCCcHHHHHHHHHHHHhccC--CcCHHhHHHHHHHHHhcCcHHHHHHHHHHHH
Q 047359 329 SSLMEYYCSNRQIDKAIALHIKIEKLKG--SLDVATYDVLLDGLFKDGRMEEAVRIFDYMK 387 (440)
Q Consensus 329 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 387 (440)
-.+.+.|.+.|.+..|..-++.+++.-+ +........++.+|...|..++|.++...+.
T Consensus 179 ~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 179 LSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 2466778899999999999999987522 2344566778899999999999988776554
No 183
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.87 E-value=2.1e-05 Score=41.16 Aligned_cols=29 Identities=17% Similarity=0.323 Sum_probs=14.8
Q ss_pred hHHHHHHHHHhccchhHHHHHHHHHHHcC
Q 047359 49 ACNALLDALYRQNEIRLASCLYGAMVRDG 77 (440)
Q Consensus 49 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 77 (440)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 34555555555555555555555554443
No 184
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.86 E-value=2.2e-05 Score=41.07 Aligned_cols=29 Identities=28% Similarity=0.609 Sum_probs=15.2
Q ss_pred hHHHHHHHHhhhccHHHHHHHHHHHHHcC
Q 047359 222 TCGCMLKALSKEGRVKEAIQIYHLISERG 250 (440)
Q Consensus 222 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 250 (440)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555443
No 185
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.81 E-value=0.01 Score=53.93 Aligned_cols=108 Identities=17% Similarity=0.233 Sum_probs=62.9
Q ss_pred CChHhHHHHHHHHHccCCcchHHHHH---------HHHHhcCCccChHhHHHHHHHHHhccc--hhHHHHHHHHHHHcCC
Q 047359 10 SQSDALSLVLDCYSHKGLFMDGLEVY---------RMMRVYGFVPAVSACNALLDALYRQNE--IRLASCLYGAMVRDGV 78 (440)
Q Consensus 10 ~~~~~~~~li~~~~~~~~~~~A~~~~---------~~~~~~~~~~~~~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~ 78 (440)
|....+.+-+-.|...|.+++|.++- +.+... ..+.-.++..=.+|.+-++ +-+...-++++.+.|-
T Consensus 554 ~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge 631 (1081)
T KOG1538|consen 554 AVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGE 631 (1081)
T ss_pred cccccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCC
Confidence 44444555566677778877776542 111111 1122234444455555444 3344445567777777
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHhcccCCchhHHHHHHHHHhcCChhHHHHHHHHHh
Q 047359 79 SPNKFTWSLVAQILCRSGKFEVVLGLLDSGIYSSVMYNLVIDFYSKKGDFGAAFDRLNEMC 139 (440)
Q Consensus 79 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 139 (440)
.|+... +...++-.|++.+|-++|.+ +|.-..|+++|..|+
T Consensus 632 ~P~~iL---lA~~~Ay~gKF~EAAklFk~-----------------~G~enRAlEmyTDlR 672 (1081)
T KOG1538|consen 632 TPNDLL---LADVFAYQGKFHEAAKLFKR-----------------SGHENRALEMYTDLR 672 (1081)
T ss_pred CchHHH---HHHHHHhhhhHHHHHHHHHH-----------------cCchhhHHHHHHHHH
Confidence 677654 55667778888888776644 566777777777664
No 186
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.80 E-value=0.00075 Score=52.44 Aligned_cols=64 Identities=11% Similarity=-0.149 Sum_probs=28.4
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCcccccchHHHHHHHhhcCcHHHHHHHHHHHHh
Q 047359 150 TYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACD 213 (440)
Q Consensus 150 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (440)
.|..+...+...|++++|...++........|.....++..+...+...|++++|...++....
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344444444455555555555555443211110122444444455555555555555544443
No 187
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=0.019 Score=49.36 Aligned_cols=168 Identities=11% Similarity=0.004 Sum_probs=96.5
Q ss_pred CchhhHHHHH-HHHHhcCChhhHHHHHHHHHhcCCCCcccccchHHHH--HHHhhcCcHHHHHHHHHHHHhcCCCCCHH-
Q 047359 146 PGFSTYSSIL-DGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVI--QKLSDMGKTYAAEMIFKRACDEKIELQDD- 221 (440)
Q Consensus 146 p~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~- 221 (440)
|...++..+- .++...|+.++|.++-...++.+ +. ..+...+ .++.-.++.+.+...|++....++.....
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld--~~---n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk 240 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD--AT---NAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSK 240 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc--cc---hhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHH
Confidence 3344444333 35667788888888877776643 22 2222233 33445677888888888877654331110
Q ss_pred h----------HHHHHHHHhhhccHHHHHHHHHHHHHcC---CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 047359 222 T----------CGCMLKALSKEGRVKEAIQIYHLISERG---ITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIP 288 (440)
Q Consensus 222 ~----------~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 288 (440)
+ +..-..-..+.|++..|.+.|.+.+..+ ..|+...|.....+..+.|+.++|+.-.+...+.+ +.
T Consensus 241 ~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD-~s 319 (486)
T KOG0550|consen 241 SASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID-SS 319 (486)
T ss_pred hHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-HH
Confidence 1 1111223456678888888888877653 34445556666666777788888877777766532 00
Q ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 047359 289 CAMELSRFVASQCGKGKWKEVEELLSAVLDK 319 (440)
Q Consensus 289 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 319 (440)
-...+..-..++...++|++|.+-+++..+.
T Consensus 320 yikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 320 YIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 0112222233344457777777777777654
No 188
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.78 E-value=0.00016 Score=46.21 Aligned_cols=57 Identities=18% Similarity=0.197 Sum_probs=35.2
Q ss_pred cCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCch
Q 047359 337 SNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSS 394 (440)
Q Consensus 337 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 394 (440)
..|++++|++.|+++.+..+. +...+..+..+|.+.|++++|.++++++....+.++
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 59 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNP 59 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHH
T ss_pred hccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHH
Confidence 456666666666666665443 555555666666666666666666666666655543
No 189
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.78 E-value=0.00023 Score=45.66 Aligned_cols=67 Identities=22% Similarity=0.228 Sum_probs=48.8
Q ss_pred chhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcC-cHHHHHHHHHHHHHcCC
Q 047359 324 DSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDG-RMEEAVRIFDYMKELKV 391 (440)
Q Consensus 324 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~ 391 (440)
+...|..+...+...|++++|+..|++.++.... +...|..+..+|...| ++++|++.+++..+.+|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3456677777777888888888888888776443 5667777777777877 68888888877776543
No 190
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.75 E-value=0.00083 Score=55.80 Aligned_cols=102 Identities=13% Similarity=0.050 Sum_probs=67.8
Q ss_pred hhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcC--HHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCC---chhhHHHHH
Q 047359 327 CCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLD--VATYDVLLDGLFKDGRMEEAVRIFDYMKELKVV---SSSSFVIVV 401 (440)
Q Consensus 327 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~ 401 (440)
.|...+..+.+.|++++|...|+.+++..+... ...+..+...|...|++++|...|+.+.+..|. .+.++..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 344444444556777888877777776533211 245667777777888888888888888766555 345566666
Q ss_pred HHHHhcccHHHHHHHHHHHHHCCCCCCHH
Q 047359 402 SRLCHLKELRKAMKNHDEMLKMGHKPDEA 430 (440)
Q Consensus 402 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 430 (440)
..+...|+.++|..+|++.++. .|+..
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~--yP~s~ 251 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKK--YPGTD 251 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH--CcCCH
Confidence 7777788888888888877763 45543
No 191
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.74 E-value=0.0013 Score=60.64 Aligned_cols=131 Identities=12% Similarity=0.103 Sum_probs=83.9
Q ss_pred CccChHhHHHHHHHHHhc-----cchhHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhc--------CChHHHHHHHhcc
Q 047359 43 FVPAVSACNALLDALYRQ-----NEIRLASCLYGAMVRDGVSPN-KFTWSLVAQILCRS--------GKFEVVLGLLDSG 108 (440)
Q Consensus 43 ~~~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~--------~~~~~a~~~~~~~ 108 (440)
.+.|...|...+++.... ++.+.|..+|++..+. .|+ ...+..+..++... .++..+.+..++.
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 356667777777664432 2366777777777765 344 33344333322221 1233444444432
Q ss_pred c------CCchhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcC
Q 047359 109 I------YSSVMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKK 178 (440)
Q Consensus 109 ~------~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 178 (440)
. .+...|..+.-.....|++++|...+++... +.|+...|..+...+...|+.++|...+++....+
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~---L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAID---LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 1 3345676666666677888888888888877 55787788888888888889888888888887755
No 192
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.74 E-value=0.013 Score=47.09 Aligned_cols=171 Identities=13% Similarity=0.091 Sum_probs=81.2
Q ss_pred HHHHHhhcCcHHHHHHHHHHHHhcCCCC--CHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh-
Q 047359 191 VIQKLSDMGKTYAAEMIFKRACDEKIEL--QDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCK- 267 (440)
Q Consensus 191 l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 267 (440)
....+...|++.+|.+.|+.+....+.. -....-.++.++.+.|+++.|...+++..+.-+.....-+...+.+.+.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH
Confidence 3344445555555555555555432221 1223334455555666666666666665554322222222222222211
Q ss_pred ------------cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHH
Q 047359 268 ------------EHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYY 335 (440)
Q Consensus 268 ------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 335 (440)
.+...+|...|+.+++ -|=...-..+|...+..+.+. =...--.+...|
T Consensus 91 ~~~~~~~~~~~D~~~~~~A~~~~~~li~---------------~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y 151 (203)
T PF13525_consen 91 KQIPGILRSDRDQTSTRKAIEEFEELIK---------------RYPNSEYAEEAKKRLAELRNR----LAEHELYIARFY 151 (203)
T ss_dssp HHHHHHH-TT---HHHHHHHHHHHHHHH---------------H-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred HhCccchhcccChHHHHHHHHHHHHHHH---------------HCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 1122334444444443 333334445555554444332 011112356678
Q ss_pred HcCCcHHHHHHHHHHHHhccCC--cCHHhHHHHHHHHHhcCcHHHHH
Q 047359 336 CSNRQIDKAIALHIKIEKLKGS--LDVATYDVLLDGLFKDGRMEEAV 380 (440)
Q Consensus 336 ~~~~~~~~a~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~a~ 380 (440)
.+.|.+..|..-++.+++.-+. ........++.+|.+.|..+.|.
T Consensus 152 ~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 152 YKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 8899999999988888876322 11235567778888888877544
No 193
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.68 E-value=0.032 Score=48.77 Aligned_cols=397 Identities=12% Similarity=0.083 Sum_probs=198.2
Q ss_pred HHccCCcchHHHHHHHHHhcCCccC------hHhHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHH--HH
Q 047359 22 YSHKGLFMDGLEVYRMMRVYGFVPA------VSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQI--LC 93 (440)
Q Consensus 22 ~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~ 93 (440)
+-+++++.+|.++|.++.+.. ..+ ...-+.++.+|.. ++.+.....+....+. .| ...|..+..+ +-
T Consensus 16 Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAY 90 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHH
Confidence 456789999999999987643 222 2234556677665 3566666666666553 23 3345555444 34
Q ss_pred hcCChHHHHHHHhccc-------------------CCchhHHHHHHHHHhcCChhHHHHHHHHHhcC---CCCCCchhhH
Q 047359 94 RSGKFEVVLGLLDSGI-------------------YSSVMYNLVIDFYSKKGDFGAAFDRLNEMCNG---RNLTPGFSTY 151 (440)
Q Consensus 94 ~~~~~~~a~~~~~~~~-------------------~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~p~~~~~ 151 (440)
+.+++.+|.+.+..-. ++...=+..+.++...|++.++..+++++... ....-+..+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 6678888888765432 22222366778889999999999999988651 2233567778
Q ss_pred HHHHHHHHhc--------CChhhHHHHHH-------HHHhc------CCCCcccccchHHHHHHHhhc--CcHHHHHHHH
Q 047359 152 SSILDGARRY--------EKTEVSDRIVG-------LMVEK------KLLPKHFLSGNDYVIQKLSDM--GKTYAAEMIF 208 (440)
Q Consensus 152 ~~l~~~~~~~--------~~~~~a~~~~~-------~~~~~------~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~ 208 (440)
+.++-.+.++ ...+-....++ ++... .+.|. ......++....-. ....--.+++
T Consensus 171 d~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~pe--eeL~s~imqhlfi~p~e~l~~~mq~l 248 (549)
T PF07079_consen 171 DRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPE--EELFSTIMQHLFIVPKERLPPLMQIL 248 (549)
T ss_pred HHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcH--HHHHHHHHHHHHhCCHhhccHHHHHH
Confidence 7755444332 11111111111 11110 11222 11111111111111 0111112222
Q ss_pred HHHHhcCCCCCHH-hHHHHHHHHhhhccHHHHHHHHHHHHHcCCCC----ChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047359 209 KRACDEKIELQDD-TCGCMLKALSKEGRVKEAIQIYHLISERGITV----RDSDYYAFVNVLCKEHQPEEVCGLLRDVVE 283 (440)
Q Consensus 209 ~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 283 (440)
......-+.|+.. +...+...+.+ +.+++..+-+.+....+.+ =..+|..++....+.++...|...+.-+.-
T Consensus 249 ~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ 326 (549)
T PF07079_consen 249 ENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKI 326 (549)
T ss_pred HHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 2222222333321 11122222222 3333333333332221110 123455555555555665555555444332
Q ss_pred cCCCC-------------------ChhhHH------------------------HH---HHHHHcCCC-HHHHHHHHHHH
Q 047359 284 RGYIP-------------------CAMELS------------------------RF---VASQCGKGK-WKEVEELLSAV 316 (440)
Q Consensus 284 ~~~~~-------------------~~~~~~------------------------~l---~~~~~~~~~-~~~a~~~~~~~ 316 (440)
..... |...++ -| ..-+-+.|. -++|..+++.+
T Consensus 327 ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~i 406 (549)
T PF07079_consen 327 LDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLI 406 (549)
T ss_pred cCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 11000 000010 01 111222333 56677777766
Q ss_pred HhcCCCCchhhhHHHH----HHHH---cCCcHHHHHHHHHHHHhccCCcC----HHhHHHHHHH--HHhcCcHHHHHHHH
Q 047359 317 LDKGLLLDSFCCSSLM----EYYC---SNRQIDKAIALHIKIEKLKGSLD----VATYDVLLDG--LFKDGRMEEAVRIF 383 (440)
Q Consensus 317 ~~~~~~~~~~~~~~l~----~~~~---~~~~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~~--~~~~g~~~~a~~~~ 383 (440)
..-... |..+-|.+. ..|. ....+.+-..+-+-+.+.|+.|- ...-|.|.++ +...|++..+.-.-
T Consensus 407 l~ft~y-D~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys 485 (549)
T PF07079_consen 407 LQFTNY-DIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYS 485 (549)
T ss_pred HHhccc-cHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 654211 333322222 2232 22334444445455556676553 2344555444 45788888887766
Q ss_pred HHHHHcCCCchhhHHHHHHHHHhcccHHHHHHHHHHHHHCCCCCCHHHHHH
Q 047359 384 DYMKELKVVSSSSFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDEATYKQ 434 (440)
Q Consensus 384 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ 434 (440)
.-+.+-.| ++.+|..++-++....++++|..++.. ++|+..++++
T Consensus 486 ~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~-----LP~n~~~~ds 530 (549)
T PF07079_consen 486 SWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK-----LPPNERMRDS 530 (549)
T ss_pred HHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh-----CCCchhhHHH
Confidence 66666655 889999999999999999999999987 4677766654
No 194
>PRK15331 chaperone protein SicA; Provisional
Probab=97.67 E-value=0.0043 Score=46.41 Aligned_cols=87 Identities=8% Similarity=-0.029 Sum_probs=58.4
Q ss_pred HHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcccHHHHH
Q 047359 335 YCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLKELRKAM 414 (440)
Q Consensus 335 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 414 (440)
+...|++++|..+|+-+.-.++. +..-|..|..++-..++++.|+..|......++.|+..+.....++...|+.+.|.
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHH
Confidence 34667777777777766654443 45556666666667777777777777666666566666666777777777777777
Q ss_pred HHHHHHHH
Q 047359 415 KNHDEMLK 422 (440)
Q Consensus 415 ~~~~~m~~ 422 (440)
..|+...+
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 77766665
No 195
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.67 E-value=0.049 Score=50.69 Aligned_cols=108 Identities=17% Similarity=0.137 Sum_probs=53.5
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHH
Q 047359 256 SDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYY 335 (440)
Q Consensus 256 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 335 (440)
-+.+--+.-+..-|+..+|.++-.+.+ .||-..|-.-+.+++..+++++-+++-+... .+.-|.-++.+|
T Consensus 685 lSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c 754 (829)
T KOG2280|consen 685 LSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEAC 754 (829)
T ss_pred CcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHH
Confidence 344444444555555555555544432 3455555555555555555555444433221 234455555566
Q ss_pred HcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHH
Q 047359 336 CSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRI 382 (440)
Q Consensus 336 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 382 (440)
.+.|+.++|.+++.+.... . -...+|.+.|++.+|.++
T Consensus 755 ~~~~n~~EA~KYiprv~~l-----~----ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 755 LKQGNKDEAKKYIPRVGGL-----Q----EKVKAYLRVGDVKEAADL 792 (829)
T ss_pred HhcccHHHHhhhhhccCCh-----H----HHHHHHHHhccHHHHHHH
Confidence 6666666665554333211 0 344555555555555543
No 196
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.64 E-value=0.0018 Score=48.97 Aligned_cols=73 Identities=18% Similarity=0.326 Sum_probs=58.1
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcccHHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 047359 362 TYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLKELRKAMKNHDEMLK-----MGHKPDEATYKQ 434 (440)
Q Consensus 362 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~t~~~ 434 (440)
....++..+...|++++|..+++.+...+|.+...|..++.+|...|+..+|.+.|+++.+ .|+.|+..|-..
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~l 141 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRAL 141 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHHH
Confidence 5566777888999999999999999999999999999999999999999999999998753 599999876543
No 197
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.62 E-value=0.00043 Score=53.93 Aligned_cols=90 Identities=20% Similarity=0.272 Sum_probs=66.8
Q ss_pred CCCChHhHHHHHHHHHcc-----CCcchHHHHHHHHHhcCCccChHhHHHHHHHHHhc----------------cchhHH
Q 047359 8 RDSQSDALSLVLDCYSHK-----GLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQ----------------NEIRLA 66 (440)
Q Consensus 8 ~~~~~~~~~~li~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----------------~~~~~a 66 (440)
-..|-.+|..+++.|.+. |..+=....+..|.+.|+..|..+|+.|++.+-+. .+-+-|
T Consensus 43 ~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~ 122 (228)
T PF06239_consen 43 QAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECA 122 (228)
T ss_pred ccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHH
Confidence 345667777788877654 45555667778888888888888888888886552 234567
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 047359 67 SCLYGAMVRDGVSPNKFTWSLVAQILCRSGK 97 (440)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 97 (440)
++++++|...|+-||..++..+++.+++.+.
T Consensus 123 i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 123 IDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 8888888888888888888888888776653
No 198
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.57 E-value=0.019 Score=43.62 Aligned_cols=130 Identities=13% Similarity=0.105 Sum_probs=95.0
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHhccc-----CCchhHHHHHHHHHhcCChhHHHHHHHHHhcCCC-CCCchhhHH
Q 047359 79 SPNKFTWSLVAQILCRSGKFEVVLGLLDSGI-----YSSVMYNLVIDFYSKKGDFGAAFDRLNEMCNGRN-LTPGFSTYS 152 (440)
Q Consensus 79 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~p~~~~~~ 152 (440)
.|++..-..|..+..+.|+..+|...|++.. .|....-.+.++....+++..|...++.+.+ .+ -..+..+..
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e-~~pa~r~pd~~L 164 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLME-YNPAFRSPDGHL 164 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhh-cCCccCCCCchH
Confidence 5777777788888999999999999998876 6777778888888889999999999998876 22 111234556
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhcCCCCcccccchHHHHHHHhhcCcHHHHHHHHHHHHh
Q 047359 153 SILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACD 213 (440)
Q Consensus 153 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (440)
.+.+.+...|.+..|+.-|+.....-..|. .-......+.+.|+.+++..-+..+.+
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~ypg~~----ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISYYPGPQ----ARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHhCCCHH----HHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 677888889999999999999888653333 333345667777776666654444433
No 199
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.55 E-value=0.043 Score=47.00 Aligned_cols=290 Identities=10% Similarity=0.028 Sum_probs=183.9
Q ss_pred HHHHHHHHH--ccCCcchHHHHHHHHHhcCCccChHhHHHHHHH--HHhccchhHHHHHHHHHHHcCCCCChhh--HHHH
Q 047359 15 LSLVLDCYS--HKGLFMDGLEVYRMMRVYGFVPAVSACNALLDA--LYRQNEIRLASCLYGAMVRDGVSPNKFT--WSLV 88 (440)
Q Consensus 15 ~~~li~~~~--~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l 88 (440)
|..|-..+. -.|+-..|.++-.+..+. +..|....-.++.+ -.-.|+++.|.+-|+.|.. .|.... ...|
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~---dPEtRllGLRgL 160 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD---DPETRLLGLRGL 160 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc---ChHHHHHhHHHH
Confidence 444444443 357777787777665532 22344445555543 3456999999999999986 344332 2233
Q ss_pred HHHHHhcCChHHHHHHHhccc----CCchhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCchh--hHHHHHHHHHh--
Q 047359 89 AQILCRSGKFEVVLGLLDSGI----YSSVMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFS--TYSSILDGARR-- 160 (440)
Q Consensus 89 ~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~--~~~~l~~~~~~-- 160 (440)
.-.--+.|+.+.|...-+... .-...+...+...+..|+++.|+++++.-+...-+.++.. .-..|+.+-..
T Consensus 161 yleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ 240 (531)
T COG3898 161 YLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL 240 (531)
T ss_pred HHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH
Confidence 333457788888888777655 3456788899999999999999999998776444556543 22233332211
Q ss_pred -cCChhhHHHHHHHHHhcCCCCcccccchHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHH
Q 047359 161 -YEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEA 239 (440)
Q Consensus 161 -~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 239 (440)
..+...|...-.+..+ +.|+- ...-..-..++.+.|+..++-.+++.+-+..+.|+. +... .+.+.|+. +
T Consensus 241 ldadp~~Ar~~A~~a~K--L~pdl-vPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i--a~lY--~~ar~gdt--a 311 (531)
T COG3898 241 LDADPASARDDALEANK--LAPDL-VPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI--ALLY--VRARSGDT--A 311 (531)
T ss_pred hcCChHHHHHHHHHHhh--cCCcc-chHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH--HHHH--HHhcCCCc--H
Confidence 2345555555555444 44552 334445668899999999999999999988666554 3222 23444543 3
Q ss_pred HHHHHHHHHc-CCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHc-CCCHHHHHHHHHHH
Q 047359 240 IQIYHLISER-GITV-RDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCG-KGKWKEVEELLSAV 316 (440)
Q Consensus 240 ~~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~ 316 (440)
+.-++...+. ..+| +..+...+..+-...|++..|..--+..... .|....|-.|.+.-.. .|+-.++...+.+.
T Consensus 312 ~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 312 LDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 3333322221 1222 4456667778888889998888777766653 5777788777766544 49999999999888
Q ss_pred Hhc
Q 047359 317 LDK 319 (440)
Q Consensus 317 ~~~ 319 (440)
.+.
T Consensus 390 v~A 392 (531)
T COG3898 390 VKA 392 (531)
T ss_pred hcC
Confidence 765
No 200
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.48 E-value=0.0069 Score=43.36 Aligned_cols=12 Identities=42% Similarity=0.540 Sum_probs=5.0
Q ss_pred hhccHHHHHHHH
Q 047359 232 KEGRVKEAIQIY 243 (440)
Q Consensus 232 ~~~~~~~a~~~~ 243 (440)
..|+.++|+..+
T Consensus 87 ~~gr~~eAl~~~ 98 (120)
T PF12688_consen 87 NLGRPKEALEWL 98 (120)
T ss_pred HCCCHHHHHHHH
Confidence 334444444433
No 201
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.48 E-value=0.056 Score=46.53 Aligned_cols=105 Identities=14% Similarity=0.119 Sum_probs=50.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHc
Q 047359 258 YYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCS 337 (440)
Q Consensus 258 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 337 (440)
.+..+.-+...|+...|.++-++.. .|+...|..-+.+++..++|++-.++... +-++.-|..++.+|.+
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLK 249 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHH
Confidence 3334444445555555554444331 24555555555555555555554443221 1134455555555555
Q ss_pred CCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHH
Q 047359 338 NRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRI 382 (440)
Q Consensus 338 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 382 (440)
.|+..+|..+..++ .+..-+..|.++|++.+|.+.
T Consensus 250 ~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 250 YGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred CCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHH
Confidence 55555555554431 113334455555555555443
No 202
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.0099 Score=49.09 Aligned_cols=104 Identities=15% Similarity=0.056 Sum_probs=81.7
Q ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcC---CcHHHHHHHHHHHHhccCCcCHHhH
Q 047359 287 IPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSN---RQIDKAIALHIKIEKLKGSLDVATY 363 (440)
Q Consensus 287 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~p~~~~~ 363 (440)
+-|...|..|...|...|+.+.|..-|....+...+ ++..+..+..++... ....++..+|+++.+.... |..+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHH
Confidence 567888999999999999999999999988876433 666666666655433 2467788899999886544 66777
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHcCCC
Q 047359 364 DVLLDGLFKDGRMEEAVRIFDYMKELKVV 392 (440)
Q Consensus 364 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 392 (440)
..|...+...|++.+|...|+.|.+..+.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 77788889999999999999999988777
No 203
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.42 E-value=0.071 Score=46.43 Aligned_cols=168 Identities=11% Similarity=0.064 Sum_probs=81.8
Q ss_pred HHHHHHhhhccHHHHHHHHHHHHHcC---CCCChhhHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 047359 225 CMLKALSKEGRVKEAIQIYHLISERG---ITVRDSDYYAFVNVLCK---EHQPEEVCGLLRDVVERGYIPCAMELSRFVA 298 (440)
Q Consensus 225 ~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 298 (440)
.++-+|....+++...++.+.+.... +.-....-....-++.+ .|+.++|..++..+......++..++..+.+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 34444555556666666655555431 11111222223333444 5566666666655444444455555555544
Q ss_pred HHHc---------CCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCc----HHHHHHHH----HHHHhccC---Cc
Q 047359 299 SQCG---------KGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQ----IDKAIALH----IKIEKLKG---SL 358 (440)
Q Consensus 299 ~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~a~~~~----~~~~~~~~---~p 358 (440)
.|-. ....++|...|.+.-+.. |+...--.++..+...|. -.+..++- ..+.+.|. ..
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~ 303 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ 303 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence 4322 123566666666655432 333221112222222222 11222222 11112332 23
Q ss_pred CHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCch
Q 047359 359 DVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSS 394 (440)
Q Consensus 359 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 394 (440)
+-.-+.+++.++.-.|+.+.|.+..++|....++.+
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 455667788888888899999998888887765533
No 204
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.41 E-value=0.0037 Score=53.49 Aligned_cols=131 Identities=14% Similarity=0.023 Sum_probs=76.9
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHH----hcCCC-CchhhhHHHHHHHHcCCcHHHHHHHHHHHHhc----cC-CcCHH
Q 047359 292 ELSRFVASQCGKGKWKEVEELLSAVL----DKGLL-LDSFCCSSLMEYYCSNRQIDKAIALHIKIEKL----KG-SLDVA 361 (440)
Q Consensus 292 ~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~p~~~ 361 (440)
.|..|...|.-.|+++.|+...+.-. +.|-. .....+..+..++.-.|+++.|.+.|+..... |- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 45555555656677777766554332 11211 12335556666777777777777776654422 21 12234
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHH----HcCCC--chhhHHHHHHHHHhcccHHHHHHHHHHHHH
Q 047359 362 TYDVLLDGLFKDGRMEEAVRIFDYMK----ELKVV--SSSSFVIVVSRLCHLKELRKAMKNHDEMLK 422 (440)
Q Consensus 362 ~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 422 (440)
+..+|...|.-..+++.|+.++.+-. +.+-. ...++..|..++...|..++|+.+.+.-++
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 45567777777777777777765432 22111 456777788888878887877777665543
No 205
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.37 E-value=0.0019 Score=41.88 Aligned_cols=61 Identities=21% Similarity=0.247 Sum_probs=41.5
Q ss_pred HHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCch
Q 047359 333 EYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSS 394 (440)
Q Consensus 333 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 394 (440)
..|.+.+++++|.++++++...++. +...+.....++.+.|++++|.+.|+...+.+|.++
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~ 63 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALELSPDDP 63 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcH
Confidence 4566677777777777777766444 556666667777777777777777777777666543
No 206
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.36 E-value=0.0037 Score=51.98 Aligned_cols=97 Identities=13% Similarity=0.075 Sum_probs=44.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCch----hhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCcccccchHH
Q 047359 115 YNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGF----STYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDY 190 (440)
Q Consensus 115 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 190 (440)
|...+..+.+.|++++|...|+.+.+ ..|+. ..+..+..++...|++++|...|+.+.+...........+..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~---~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVK---KYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH---HCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 34444333445555555555555544 22322 234444455555555555555555555432111101223333
Q ss_pred HHHHHhhcCcHHHHHHHHHHHHhc
Q 047359 191 VIQKLSDMGKTYAAEMIFKRACDE 214 (440)
Q Consensus 191 l~~~~~~~~~~~~a~~~~~~~~~~ 214 (440)
+...+...|+.++|..+|+.+.+.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344444445555555555444443
No 207
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.36 E-value=0.0041 Score=48.67 Aligned_cols=103 Identities=15% Similarity=0.152 Sum_probs=56.4
Q ss_pred CHHhHHHHHHHHhh-----hccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhH
Q 047359 219 QDDTCGCMLKALSK-----EGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMEL 293 (440)
Q Consensus 219 ~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 293 (440)
+-.+|..++..|.+ .|..+-....++.|.+-|+.-|..+|+.|++.+=+ |.+- |... +
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv---------------p~n~-f 108 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV---------------PRNF-F 108 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc---------------cccH-H
Confidence 45556666655543 35666666677777777777777777777776643 2111 1110 0
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCc
Q 047359 294 SRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQ 340 (440)
Q Consensus 294 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 340 (440)
-++...| -.+-+-|++++++|...|+.||..++..+++.+++.+.
T Consensus 109 Q~~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 109 QAEFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 0000011 12334566666666666666666666666666655543
No 208
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.33 E-value=0.13 Score=47.64 Aligned_cols=150 Identities=13% Similarity=0.077 Sum_probs=68.7
Q ss_pred cchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhccc------CCchhHHHHHHHHHhcCChhHHHHH
Q 047359 61 NEIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSGKFEVVLGLLDSGI------YSSVMYNLVIDFYSKKGDFGAAFDR 134 (440)
Q Consensus 61 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~------~~~~~~~~li~~~~~~~~~~~a~~~ 134 (440)
|++++|+++|-+|-+++ ..+..+.+.|++-.+.++++.-. .-..+|+.+...+.....+++|.+.
T Consensus 748 g~feeaek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~y 818 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKY 818 (1189)
T ss_pred cchhHhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555554443321 12344445555555555555433 1123455555555555555555555
Q ss_pred HHHHhcCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCcccccchHHHHHHHhhcCcHHHHHHHHHHHHhc
Q 047359 135 LNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDE 214 (440)
Q Consensus 135 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 214 (440)
|..-.. -...+.++.+..++++-+.+...+.+ + ....-.+.+++.+.|.-++|.+.+-+-..
T Consensus 819 Y~~~~~----------~e~~~ecly~le~f~~LE~la~~Lpe-----~--s~llp~~a~mf~svGMC~qAV~a~Lr~s~- 880 (1189)
T KOG2041|consen 819 YSYCGD----------TENQIECLYRLELFGELEVLARTLPE-----D--SELLPVMADMFTSVGMCDQAVEAYLRRSL- 880 (1189)
T ss_pred HHhccc----------hHhHHHHHHHHHhhhhHHHHHHhcCc-----c--cchHHHHHHHHHhhchHHHHHHHHHhccC-
Confidence 544321 01234444444444444443333321 1 33334455666666666666555433211
Q ss_pred CCCCCHHhHHHHHHHHhhhccHHHHHHHHHH
Q 047359 215 KIELQDDTCGCMLKALSKEGRVKEAIQIYHL 245 (440)
Q Consensus 215 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 245 (440)
| ...+..|...+++.+|.++-+.
T Consensus 881 ---p-----kaAv~tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 881 ---P-----KAAVHTCVELNQWGEAVELAQR 903 (1189)
T ss_pred ---c-----HHHHHHHHHHHHHHHHHHHHHh
Confidence 1 1233445555555555555443
No 209
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.29 E-value=0.0047 Score=52.90 Aligned_cols=261 Identities=11% Similarity=-0.001 Sum_probs=160.1
Q ss_pred HHHHccCCcchHHHHHHHHHhcCCccCh----HhHHHHHHHHHhccchhHHHHHHHHH--HH--cCC-CCChhhHHHHHH
Q 047359 20 DCYSHKGLFMDGLEVYRMMRVYGFVPAV----SACNALLDALYRQNEIRLASCLYGAM--VR--DGV-SPNKFTWSLVAQ 90 (440)
Q Consensus 20 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~--~~--~~~-~~~~~~~~~l~~ 90 (440)
.-+++.|+....+.+|+...+.|. .|. ..|..|..+|.-.+++++|.+....= +. .|- .-...+...|.+
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 457899999999999999999873 243 35666777777888899998875421 11 110 012223344555
Q ss_pred HHHhcCChHHHHHHHhccc----------CCchhHHHHHHHHHhcCC--------------------hhHHHHHHHHHhc
Q 047359 91 ILCRSGKFEVVLGLLDSGI----------YSSVMYNLVIDFYSKKGD--------------------FGAAFDRLNEMCN 140 (440)
Q Consensus 91 ~~~~~~~~~~a~~~~~~~~----------~~~~~~~~li~~~~~~~~--------------------~~~a~~~~~~~~~ 140 (440)
.+--.|.+++|...-.+-. ....++-.+...|...|+ ++.|.++|.+=.+
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~ 183 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLE 183 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 5556677777766533221 223345556666665543 2333444433211
Q ss_pred ---CCCCC-CchhhHHHHHHHHHhcCChhhHHHHHHHHHh----cCC-CCcccccchHHHHHHHhhcCcHHHHHHHHHHH
Q 047359 141 ---GRNLT-PGFSTYSSILDGARRYEKTEVSDRIVGLMVE----KKL-LPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRA 211 (440)
Q Consensus 141 ---~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 211 (440)
..|-. .--..|..|-..|.-.|+++.|+...+.-+. .|- ... ..++..+.+++.-.|+++.|.+.|+.-
T Consensus 184 l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAae--RRA~sNlgN~hiflg~fe~A~ehYK~t 261 (639)
T KOG1130|consen 184 LSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAE--RRAHSNLGNCHIFLGNFELAIEHYKLT 261 (639)
T ss_pred HHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHH--HHhhcccchhhhhhcccHhHHHHHHHH
Confidence 01110 1122455555556667888888877654332 221 112 456777889999999999999988865
Q ss_pred Hhc----C-CCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHc-----CCCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 047359 212 CDE----K-IELQDDTCGCMLKALSKEGRVKEAIQIYHLISER-----GITVRDSDYYAFVNVLCKEHQPEEVCGLLRDV 281 (440)
Q Consensus 212 ~~~----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 281 (440)
... | -.....+..++...|.-..+++.|+.++.+-... +..-....+.++..++...|..++|+.+.+..
T Consensus 262 l~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~h 341 (639)
T KOG1130|consen 262 LNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELH 341 (639)
T ss_pred HHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 432 2 1234456677888888888899998887664321 12224567888999999999999998877665
Q ss_pred HH
Q 047359 282 VE 283 (440)
Q Consensus 282 ~~ 283 (440)
.+
T Consensus 342 l~ 343 (639)
T KOG1130|consen 342 LR 343 (639)
T ss_pred HH
Confidence 43
No 210
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.27 E-value=0.11 Score=45.49 Aligned_cols=413 Identities=11% Similarity=0.053 Sum_probs=218.8
Q ss_pred CCChHhHHHHHHHHHccCCcchHHHHHHHHHhcCCccChHhHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHH
Q 047359 9 DSQSDALSLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLV 88 (440)
Q Consensus 9 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 88 (440)
+.|..+|-.||+.+..+|..++-.+++++|...- +--..+|..-+.+=...+++.....+|.+.+...+ +...|...
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pf-p~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l--~ldLW~lY 115 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSPF-PIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL--NLDLWMLY 115 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCC-ccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc--cHhHHHHH
Confidence 5567788889999988898988889988887532 33345677777776677888888888888877643 45556665
Q ss_pred HHHHHhcCC---------hHHHHHHHhccc----CCchhHHHHHHHHH---------hcCChhHHHHHHHHHhcCCCCCC
Q 047359 89 AQILCRSGK---------FEVVLGLLDSGI----YSSVMYNLVIDFYS---------KKGDFGAAFDRLNEMCNGRNLTP 146 (440)
Q Consensus 89 ~~~~~~~~~---------~~~a~~~~~~~~----~~~~~~~~li~~~~---------~~~~~~~a~~~~~~~~~~~~~~p 146 (440)
+.--.+.+. +-+|.++.-... .+...|+..+..+- ++.+++.....+.++.. ..+..
T Consensus 116 l~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~-tP~~n 194 (660)
T COG5107 116 LEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQ-TPMGN 194 (660)
T ss_pred HHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHc-Ccccc
Confidence 554444331 123333322211 23334554443322 22334455556666654 11110
Q ss_pred chhhHHH------HHH-HHHh------cCChhhHHHHHHHHHh--cCCCCcc--cccchH-----------HHHHHHhhc
Q 047359 147 GFSTYSS------ILD-GARR------YEKTEVSDRIVGLMVE--KKLLPKH--FLSGND-----------YVIQKLSDM 198 (440)
Q Consensus 147 ~~~~~~~------l~~-~~~~------~~~~~~a~~~~~~~~~--~~~~~~~--~~~~~~-----------~l~~~~~~~ 198 (440)
=...|+- =+. +-++ .--+-.|...++++.. .|+...+ +..+++ ..|+.-...
T Consensus 195 leklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en 274 (660)
T COG5107 195 LEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMEN 274 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhcC
Confidence 0111111 000 0000 0112344444554432 1221110 011111 122211111
Q ss_pred C-----c--HHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHH-HHHHhcCC
Q 047359 199 G-----K--TYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFV-NVLCKEHQ 270 (440)
Q Consensus 199 ~-----~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~ 270 (440)
| + .+..--+++..... +...+.+|----..+...++-+.|++..+...+. .|+ ....+ ..+.-..+
T Consensus 275 ~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~--sps---L~~~lse~yel~nd 348 (660)
T COG5107 275 GLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM--SPS---LTMFLSEYYELVND 348 (660)
T ss_pred CcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC--CCc---hheeHHHHHhhccc
Confidence 1 0 00111111111111 0112223332333344456666666655543322 122 11111 11111222
Q ss_pred hHHHHHHHHHHHH--------------cCC---------------CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcC-
Q 047359 271 PEEVCGLLRDVVE--------------RGY---------------IPCAMELSRFVASQCGKGKWKEVEELLSAVLDKG- 320 (440)
Q Consensus 271 ~~~a~~~~~~~~~--------------~~~---------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~- 320 (440)
.+.....|+...+ .+. ..-...|...+..-.+...++.|..+|-+..+.+
T Consensus 349 ~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~ 428 (660)
T COG5107 349 EEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGI 428 (660)
T ss_pred HHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCC
Confidence 2222222211110 000 0112356667777777788999999999999888
Q ss_pred CCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhH-HHHHHHHHhcCcHHHHHHHHHHHHHcCCC--chhhH
Q 047359 321 LLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATY-DVLLDGLFKDGRMEEAVRIFDYMKELKVV--SSSSF 397 (440)
Q Consensus 321 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~ 397 (440)
+.+++.++++++..++ .|+...|.++|+--... -||...| +-.+..+.+.++-+.|..+|+...+.-.. -...|
T Consensus 429 ~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy 505 (660)
T COG5107 429 VGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIY 505 (660)
T ss_pred CCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHH
Confidence 6678888999998765 57888999999876654 2444433 45667778899999999999976654322 35688
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHCCCCCCHHHHHHHh
Q 047359 398 VIVVSRLCHLKELRKAMKNHDEMLKMGHKPDEATYKQVI 436 (440)
Q Consensus 398 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll 436 (440)
..++..-..-|+...+..+=++|.. +.|-..+.....
T Consensus 506 ~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~ 542 (660)
T COG5107 506 DKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFT 542 (660)
T ss_pred HHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHH
Confidence 9999988899999999888888877 456554444433
No 211
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.23 E-value=0.056 Score=41.24 Aligned_cols=133 Identities=14% Similarity=0.102 Sum_probs=101.2
Q ss_pred CCchhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCcccccchH
Q 047359 110 YSSVMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGND 189 (440)
Q Consensus 110 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 189 (440)
|++..--.|..+..+.|+..+|...|.+... .-..-|......+.++....+++..|...++.+.+....-. .+....
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r-~pd~~L 164 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFR-SPDGHL 164 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccC-CCCchH
Confidence 6666667788899999999999999999976 33445677888889999999999999999999988752211 144666
Q ss_pred HHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHH
Q 047359 190 YVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLI 246 (440)
Q Consensus 190 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 246 (440)
.+.+.+...|.+.+|+.-|+...+.-+.|....+. ...+.+.|+.+++..-+..+
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y--~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISYYPGPQARIYY--AEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHH--HHHHHHhcchhHHHHHHHHH
Confidence 78899999999999999999999876665555543 33456677666655444333
No 212
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.20 E-value=0.13 Score=44.85 Aligned_cols=172 Identities=14% Similarity=0.049 Sum_probs=108.8
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcC---CCCChhhHHHHHHHHHc---CCCHHHHHHHHHHHHhcCCCCchhhh
Q 047359 255 DSDYYAFVNVLCKEHQPEEVCGLLRDVVERG---YIPCAMELSRFVASQCG---KGKWKEVEELLSAVLDKGLLLDSFCC 328 (440)
Q Consensus 255 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~ 328 (440)
..+...++-+|....+++...++++.+.... +......-....-++.+ .|+.++|+.++..+....-.+++.++
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 3344456667889999999999999998641 11122222234445556 79999999999997666667788888
Q ss_pred HHHHHHHHc---------CCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcH----HHHHHHH----HHHHHcCC
Q 047359 329 SSLMEYYCS---------NRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRM----EEAVRIF----DYMKELKV 391 (440)
Q Consensus 329 ~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~----~~a~~~~----~~~~~~~~ 391 (440)
..+.+.|-. ....++|+..|.+.-+. +|+...--.++..+...|.. .+..++- ....+.|.
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~ 298 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGS 298 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcc
Confidence 888877632 23477888888877664 35544332333333333321 2223332 11223333
Q ss_pred C----chhhHHHHHHHHHhcccHHHHHHHHHHHHHCCCCCCHH
Q 047359 392 V----SSSSFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDEA 430 (440)
Q Consensus 392 ~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 430 (440)
. +--.+.+++.+..-.|++++|.+..++|.+. .|...
T Consensus 299 ~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l--~~~~W 339 (374)
T PF13281_consen 299 LEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL--KPPAW 339 (374)
T ss_pred ccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc--CCcch
Confidence 2 3334557788888999999999999999985 34443
No 213
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.19 E-value=0.14 Score=45.02 Aligned_cols=357 Identities=11% Similarity=0.059 Sum_probs=196.3
Q ss_pred HccCCcchHHHHHHHHHhc--CCcc------------ChHhHHHHHHHHHhccchhHHHHHHHHHHHcCC----CCChhh
Q 047359 23 SHKGLFMDGLEVYRMMRVY--GFVP------------AVSACNALLDALYRQNEIRLASCLYGAMVRDGV----SPNKFT 84 (440)
Q Consensus 23 ~~~~~~~~A~~~~~~~~~~--~~~~------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~ 84 (440)
-+.+.+..|++.+...... +..| |-..=+..+..+...|++.+++.+++++...=+ .-+..+
T Consensus 90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~ 169 (549)
T PF07079_consen 90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDM 169 (549)
T ss_pred HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHH
Confidence 4678889999888777654 2211 112224556778899999999999988865433 367888
Q ss_pred HHHHHHHHHhcCChH---------------HHHHHHhccc-----------CCchhHHHHHHHHHhc--CChhHHHHHHH
Q 047359 85 WSLVAQILCRSGKFE---------------VVLGLLDSGI-----------YSSVMYNLVIDFYSKK--GDFGAAFDRLN 136 (440)
Q Consensus 85 ~~~l~~~~~~~~~~~---------------~a~~~~~~~~-----------~~~~~~~~li~~~~~~--~~~~~a~~~~~ 136 (440)
|+.++-.++++=-++ .+.-..+++. |.......++....-. .+..--.+++.
T Consensus 170 yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~ 249 (549)
T PF07079_consen 170 YDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILE 249 (549)
T ss_pred HHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHH
Confidence 888776666542111 1111112221 2222222222222111 11122233333
Q ss_pred HHhcCCCCCCchh-hHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC--cccccchHHHHHHHhhcCcHHHHHHHHHHHHh
Q 047359 137 EMCNGRNLTPGFS-TYSSILDGARRYEKTEVSDRIVGLMVEKKLLP--KHFLSGNDYVIQKLSDMGKTYAAEMIFKRACD 213 (440)
Q Consensus 137 ~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (440)
.... .-+.|+-. ....+.....+ +.+++..+-+.+....+.+ .....++..++....+.++...|.+.+.-+.-
T Consensus 250 ~We~-~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ 326 (549)
T PF07079_consen 250 NWEN-FYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKI 326 (549)
T ss_pred HHHh-hccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 3322 34455533 22333333333 4555555554444332111 01155777888888899999999998887766
Q ss_pred cCCCCCHHhHHH-------HHHHHhh----hccHHHHHHHHHHHHHcCCCCChhhHHHHHH---HHHhcCC-hHHHHHHH
Q 047359 214 EKIELQDDTCGC-------MLKALSK----EGRVKEAIQIYHLISERGITVRDSDYYAFVN---VLCKEHQ-PEEVCGLL 278 (440)
Q Consensus 214 ~~~~~~~~~~~~-------l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~-~~~a~~~~ 278 (440)
..+. ...-.. +-+..+. .-+...=+.+++.....++. .......++. -+-+.|. -++|+.++
T Consensus 327 ldp~--~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiD-rqQLvh~L~~~Ak~lW~~g~~dekalnLL 403 (549)
T PF07079_consen 327 LDPR--ISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDID-RQQLVHYLVFGAKHLWEIGQCDEKALNLL 403 (549)
T ss_pred cCCc--chhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHHHHHhcCCccHHHHHHH
Confidence 5333 221111 1122221 11223334555555554432 1122222332 2345555 78899999
Q ss_pred HHHHHcCCCCChhhHHHH----HHHHHc---CCCHHHHHHHHHHHHhcCCCCchh----hhHHHHH--HHHcCCcHHHHH
Q 047359 279 RDVVERGYIPCAMELSRF----VASQCG---KGKWKEVEELLSAVLDKGLLLDSF----CCSSLME--YYCSNRQIDKAI 345 (440)
Q Consensus 279 ~~~~~~~~~~~~~~~~~l----~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~--~~~~~~~~~~a~ 345 (440)
+.+.+-. +-|...-|.+ =..|.+ ...+.+-.++-+-+.+.|+.|-.. .-|.+.. .+...|++.++.
T Consensus 404 k~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~ 482 (549)
T PF07079_consen 404 KLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCY 482 (549)
T ss_pred HHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHH
Confidence 9988642 1222222221 122222 244555566666666778776433 3344433 345789999988
Q ss_pred HHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 047359 346 ALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKE 388 (440)
Q Consensus 346 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 388 (440)
-.-..+.+ +.|++.+|..+.-+.....++++|..++..+..
T Consensus 483 ~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~ 523 (549)
T PF07079_consen 483 LYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLPP 523 (549)
T ss_pred HHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCCC
Confidence 77666665 789999999999999999999999999987754
No 214
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.19 E-value=0.2 Score=46.89 Aligned_cols=114 Identities=15% Similarity=0.110 Sum_probs=85.1
Q ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHH
Q 047359 288 PCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLL 367 (440)
Q Consensus 288 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 367 (440)
-...+.+--+.-+...|+..+|.++-.+.. -||-..|..-+.+++..+++++-+++-+... .+.-|.-+.
T Consensus 682 f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFV 751 (829)
T KOG2280|consen 682 FVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFV 751 (829)
T ss_pred cccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHH
Confidence 334455555666677799999988876654 3688889889999999999998776643322 366788889
Q ss_pred HHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcccHHHHHHHHHH
Q 047359 368 DGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLKELRKAMKNHDE 419 (440)
Q Consensus 368 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 419 (440)
.+|.+.|+.++|.+++-+.... .....+|.+.|++.+|.++--+
T Consensus 752 e~c~~~~n~~EA~KYiprv~~l--------~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 752 EACLKQGNKDEAKKYIPRVGGL--------QEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHHhcccHHHHhhhhhccCCh--------HHHHHHHHHhccHHHHHHHHHH
Confidence 9999999999999988665432 1567788889998888876443
No 215
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.14 E-value=0.14 Score=44.11 Aligned_cols=109 Identities=14% Similarity=0.170 Sum_probs=74.7
Q ss_pred hHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 047359 222 TCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQC 301 (440)
Q Consensus 222 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 301 (440)
+.+..+.-+...|+...|.++-.+. .+ |+...|...+.+++..++|++-.++-.. +-++.-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F---kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF---KV-PDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc---CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 4444556666777777777765544 23 5777888888888888888877765432 123467888888888
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHH
Q 047359 302 GKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIK 350 (440)
Q Consensus 302 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 350 (440)
+.|+..+|..++..+ .+..-+..|.+.|++.+|.+.-.+
T Consensus 249 ~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHH
Confidence 888888888777651 124566777888888888766433
No 216
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.14 E-value=0.061 Score=40.56 Aligned_cols=56 Identities=21% Similarity=0.343 Sum_probs=28.5
Q ss_pred HHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHH
Q 047359 190 YVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLI 246 (440)
Q Consensus 190 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 246 (440)
.++..+...|+++.|..+...+....+- +...|..++.+|...|+...|.++|+.+
T Consensus 67 ~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 67 RLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 3444455555555555555555554443 4555555555555555555555555544
No 217
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.11 E-value=0.0045 Score=40.74 Aligned_cols=61 Identities=15% Similarity=0.211 Sum_probs=34.1
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHHc----CCC---chhhHHHHHHHHHhcccHHHHHHHHHHHHH
Q 047359 362 TYDVLLDGLFKDGRMEEAVRIFDYMKEL----KVV---SSSSFVIVVSRLCHLKELRKAMKNHDEMLK 422 (440)
Q Consensus 362 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 422 (440)
+++.+...|...|++++|+..|++..+. |.. ...++..+..++...|++++|++.+++..+
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4555566666666666666666655422 111 133556666666666666666666666543
No 218
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.07 E-value=0.26 Score=45.88 Aligned_cols=156 Identities=15% Similarity=0.116 Sum_probs=72.3
Q ss_pred CChHHHHHHHhcccCCchhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHH
Q 047359 96 GKFEVVLGLLDSGIYSSVMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMV 175 (440)
Q Consensus 96 ~~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 175 (440)
|++++|++++-.+. -....|..+.+.||+-...++++.--....-..-...|+.+...++....|++|.+.+..-.
T Consensus 748 g~feeaek~yld~d----rrDLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~ 823 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDAD----RRDLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCG 823 (1189)
T ss_pred cchhHhhhhhhccc----hhhhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 55555555554443 11223444455555554444443321100000112345555555555555555555554321
Q ss_pred hcCCCCcccccchHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCCh
Q 047359 176 EKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRD 255 (440)
Q Consensus 176 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 255 (440)
. ....+.++.+..++++-+.+-+.+.+ +....-.+..++...|.-++|.+.|-+... |
T Consensus 824 ~-----------~e~~~ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p-- 881 (1189)
T KOG2041|consen 824 D-----------TENQIECLYRLELFGELEVLARTLPE-----DSELLPVMADMFTSVGMCDQAVEAYLRRSL----P-- 881 (1189)
T ss_pred c-----------hHhHHHHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHHHhhchHHHHHHHHHhccC----c--
Confidence 1 11244555555555554444444332 334455566666667776666665533211 1
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHH
Q 047359 256 SDYYAFVNVLCKEHQPEEVCGLLRD 280 (440)
Q Consensus 256 ~~~~~l~~~~~~~~~~~~a~~~~~~ 280 (440)
...+..|...+++.+|.++-+.
T Consensus 882 ---kaAv~tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 882 ---KAAVHTCVELNQWGEAVELAQR 903 (1189)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHh
Confidence 2244555566666666655443
No 219
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.0092 Score=51.26 Aligned_cols=126 Identities=15% Similarity=0.112 Sum_probs=85.4
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhc-----CCCC---------chhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHH
Q 047359 296 FVASQCGKGKWKEVEELLSAVLDK-----GLLL---------DSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVA 361 (440)
Q Consensus 296 l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 361 (440)
-.+.+.+.|++..|..-|++.... +..+ -..+++.+..+|.+.+++..|++..++.+..+.. |..
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~-N~K 292 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPN-NVK 292 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-chh
Confidence 346777888888888888886532 1111 1335566666777778888888877777776443 666
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcccHHH-HHHHHHHHHH
Q 047359 362 TYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLKELRK-AMKNHDEMLK 422 (440)
Q Consensus 362 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~ 422 (440)
....=..+|...|+++.|+..|+++.+..|.|..+-..++..-.+.....+ ..++|..|..
T Consensus 293 ALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 293 ALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 666667777778888888888888888777776666666666555544433 3667777765
No 220
>PRK15331 chaperone protein SicA; Provisional
Probab=96.98 E-value=0.037 Score=41.58 Aligned_cols=87 Identities=15% Similarity=0.079 Sum_probs=57.5
Q ss_pred HHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHH
Q 047359 300 QCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEA 379 (440)
Q Consensus 300 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 379 (440)
+...|++++|..+|+-+...++. +..-|..|..++-..+++++|+..|......+.. |+..+-....++...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHHH
Confidence 34567777777777777655443 4555566666666777777777777766655433 455555666777777777777
Q ss_pred HHHHHHHHH
Q 047359 380 VRIFDYMKE 388 (440)
Q Consensus 380 ~~~~~~~~~ 388 (440)
...|+...+
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 777776666
No 221
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.98 E-value=0.013 Score=42.40 Aligned_cols=98 Identities=12% Similarity=0.110 Sum_probs=68.4
Q ss_pred ChHhHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhc---ccCCchhHHHHHHHH
Q 047359 46 AVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSGKFEVVLGLLDS---GIYSSVMYNLVIDFY 122 (440)
Q Consensus 46 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~---~~~~~~~~~~li~~~ 122 (440)
|..++..++.++++.|+.+....+++..- |+.++... ..+. +.. +.|+..+..+++.+|
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~---------~~~~-------~~~~spl~Pt~~lL~AIv~sf 62 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKK---------KEGD-------YPPSSPLYPTSRLLIAIVHSF 62 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCcc---------ccCc-------cCCCCCCCCCHHHHHHHHHHH
Confidence 45677788888888888888877776543 33333211 0000 111 118888888999999
Q ss_pred HhcCChhHHHHHHHHHhcCCCCCCchhhHHHHHHHHHhc
Q 047359 123 SKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDGARRY 161 (440)
Q Consensus 123 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 161 (440)
+..|++..|+++.+...+..+++.+..+|..|++-+...
T Consensus 63 ~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 63 GYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred HhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999887788877788888888755443
No 222
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.97 E-value=0.083 Score=42.26 Aligned_cols=56 Identities=13% Similarity=0.035 Sum_probs=34.5
Q ss_pred HHHHHHHHhhhccHHHHHHHHHHHHHcC---CCCChhhHHHHHHHHHhcCChHHHHHHHH
Q 047359 223 CGCMLKALSKEGRVKEAIQIYHLISERG---ITVRDSDYYAFVNVLCKEHQPEEVCGLLR 279 (440)
Q Consensus 223 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 279 (440)
|-..|-.+.-..|+..|.+.++.--+.+ -+-+..+...|+.+| ..|+.+++.+++.
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence 4455556666677778888777744332 223456666777666 5577777666554
No 223
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.023 Score=49.00 Aligned_cols=127 Identities=19% Similarity=-0.005 Sum_probs=89.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHc-----CCC---------CChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchh
Q 047359 261 FVNVLCKEHQPEEVCGLLRDVVER-----GYI---------PCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSF 326 (440)
Q Consensus 261 l~~~~~~~~~~~~a~~~~~~~~~~-----~~~---------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 326 (440)
-.+.+.+.|++..|..-|+.+... +.. .-..++..+..++.+.+++..|+..-.+.+..+.. |..
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~-N~K 292 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPN-NVK 292 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-chh
Confidence 456788999999999999886542 111 12346677788888999999999999999887654 777
Q ss_pred hhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHH-HHHHHHHHHHc
Q 047359 327 CCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEE-AVRIFDYMKEL 389 (440)
Q Consensus 327 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~ 389 (440)
..-.-.++|...|+++.|+..|+++.+..+. |...-+-|+.+-.+..+..+ ..++|..|-..
T Consensus 293 ALyRrG~A~l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 293 ALYRRGQALLALGEYDLARDDFQKALKLEPS-NKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 7777788999999999999999999985333 33344444444444443333 35566666544
No 224
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.94 E-value=0.22 Score=42.95 Aligned_cols=80 Identities=10% Similarity=-0.010 Sum_probs=40.5
Q ss_pred hcCChHHHHHHHhcccCCchhH----HHHHHHHHhcCChhHHHHHHHHHhcCCCCCCch-hhHHHHHHHHHhcCChhhHH
Q 047359 94 RSGKFEVVLGLLDSGIYSSVMY----NLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGF-STYSSILDGARRYEKTEVSD 168 (440)
Q Consensus 94 ~~~~~~~a~~~~~~~~~~~~~~----~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~ 168 (440)
-.|+.+.|.+-|+.|..++.+- ..|.-.--+.|+.+.|..+-++.-. ..|.. ..+...+...+..|+|+.|+
T Consensus 132 ~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~---~Ap~l~WA~~AtLe~r~~~gdWd~Al 208 (531)
T COG3898 132 LEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAE---KAPQLPWAARATLEARCAAGDWDGAL 208 (531)
T ss_pred hcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHh---hccCCchHHHHHHHHHHhcCChHHHH
Confidence 3466666666666666443332 2222222344555555555555532 33332 24555555566666666666
Q ss_pred HHHHHHHh
Q 047359 169 RIVGLMVE 176 (440)
Q Consensus 169 ~~~~~~~~ 176 (440)
++++.-..
T Consensus 209 kLvd~~~~ 216 (531)
T COG3898 209 KLVDAQRA 216 (531)
T ss_pred HHHHHHHH
Confidence 66555444
No 225
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.91 E-value=0.17 Score=41.13 Aligned_cols=130 Identities=11% Similarity=0.031 Sum_probs=67.5
Q ss_pred HHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHH-----H
Q 047359 189 DYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFV-----N 263 (440)
Q Consensus 189 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-----~ 263 (440)
+.++..+.-.|.+.-....+++..+..++.++.....+.+.-.+.||.+.|...|++..+..-..+..+++.++ .
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 44555555566666666666666666555566666666666666666666666666555443233333333222 2
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 047359 264 VLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDK 319 (440)
Q Consensus 264 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 319 (440)
.+.-++++..|...+.++...+ +.+....|.-.-+..-.|+...|.+.++.|...
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred heecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2334455555555555555432 122222222222222235566666666666554
No 226
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.90 E-value=0.33 Score=44.37 Aligned_cols=125 Identities=14% Similarity=0.155 Sum_probs=83.7
Q ss_pred HhHHHHHHHHHccCCcchHHHHHHHHHhcCCccChH-hHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 047359 13 DALSLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVS-ACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQI 91 (440)
Q Consensus 13 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 91 (440)
..|..+|.---.....+.+..++..+... -|... -|......=.+.|..+.+.++|++-++ |++.+...|......
T Consensus 46 ~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f 122 (577)
T KOG1258|consen 46 DAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAF 122 (577)
T ss_pred cchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHH
Confidence 34444554444444455555666666643 24433 344444444567888999999999876 466677777776655
Q ss_pred HH-hcCChHHHHHHHhccc-------CCchhHHHHHHHHHhcCChhHHHHHHHHHhc
Q 047359 92 LC-RSGKFEVVLGLLDSGI-------YSSVMYNLVIDFYSKKGDFGAAFDRLNEMCN 140 (440)
Q Consensus 92 ~~-~~~~~~~a~~~~~~~~-------~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 140 (440)
+. ..|+.+.....|+... .+...|...|..-..++++.....+|++..+
T Consensus 123 ~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRile 179 (577)
T KOG1258|consen 123 LKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILE 179 (577)
T ss_pred HhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHh
Confidence 44 4467777778887766 5666788888888888899999999999876
No 227
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.88 E-value=0.09 Score=37.60 Aligned_cols=65 Identities=22% Similarity=0.286 Sum_probs=37.9
Q ss_pred HhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcccHHHHHHHHHHHHHCCC
Q 047359 361 ATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLKELRKAMKNHDEMLKMGH 425 (440)
Q Consensus 361 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 425 (440)
.....-+..+...|+-+.-.+++..+.+.+-.+|.....+..+|.+.|+..++-+++.++.+.|+
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 34445555666677777777777666654444666777777777777777777777777776664
No 228
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.87 E-value=0.023 Score=46.38 Aligned_cols=100 Identities=16% Similarity=0.183 Sum_probs=70.4
Q ss_pred hhHHHHHHHHcCCcHHHHHHHHHHHHhccCC--cCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCC---chhhHHHHH
Q 047359 327 CCSSLMEYYCSNRQIDKAIALHIKIEKLKGS--LDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVV---SSSSFVIVV 401 (440)
Q Consensus 327 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~ 401 (440)
.|+.-+..+ ..|++..|..-|...++..+. -....+..|..++...|++++|..+|..+.+..|. -+..+..+.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 455555443 556688888888888776432 12335556778888888888888888888776655 456777788
Q ss_pred HHHHhcccHHHHHHHHHHHHHCCCCCCH
Q 047359 402 SRLCHLKELRKAMKNHDEMLKMGHKPDE 429 (440)
Q Consensus 402 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 429 (440)
.+..+.|+.++|..+|++..+. .|+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~--YP~t 248 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR--YPGT 248 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH--CCCC
Confidence 8888888888888888888763 4443
No 229
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.85 E-value=0.0052 Score=40.43 Aligned_cols=63 Identities=19% Similarity=0.220 Sum_probs=42.9
Q ss_pred hhhHHHHHHHHcCCcHHHHHHHHHHHHhc----cC-CcC-HHhHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 047359 326 FCCSSLMEYYCSNRQIDKAIALHIKIEKL----KG-SLD-VATYDVLLDGLFKDGRMEEAVRIFDYMKE 388 (440)
Q Consensus 326 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 388 (440)
.+++.+...|...|++++|+..+++..+. |. .|+ ..++..+..+|...|++++|++.+++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45666777777778888887777777643 11 122 45677777888888888888888877654
No 230
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.84 E-value=0.0046 Score=35.23 Aligned_cols=40 Identities=15% Similarity=0.178 Sum_probs=24.7
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHH
Q 047359 362 TYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVV 401 (440)
Q Consensus 362 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 401 (440)
++..+...|...|++++|+++|+++.+..|.++..+..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 4555666666666666666666666666666665555443
No 231
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.83 E-value=0.16 Score=46.72 Aligned_cols=164 Identities=16% Similarity=0.063 Sum_probs=103.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCC-----hhhHHHHHHHHHc----CCCHHHHHHHHHHHHhcCCCCchh
Q 047359 257 DYYAFVNVLCKEHQPEEVCGLLRDVVERG-YIPC-----AMELSRFVASQCG----KGKWKEVEELLSAVLDKGLLLDSF 326 (440)
Q Consensus 257 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~-----~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~ 326 (440)
.+..+++...-.|+-+.+++.+....+.+ +.-. .-.|...+..++. ..+.+.|.+++..+... -|+..
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~ 267 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSA 267 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcH
Confidence 34555666666677777777776655432 1111 1123333333332 45678889999988876 35555
Q ss_pred hhHHH-HHHHHcCCcHHHHHHHHHHHHhccC---CcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHH
Q 047359 327 CCSSL-MEYYCSNRQIDKAIALHIKIEKLKG---SLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVS 402 (440)
Q Consensus 327 ~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 402 (440)
.|... .+.+...|++++|++.|++...... +.....+--+...+.-..++++|.+.|..+.+....+...|..+..
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a 347 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 55433 3566788999999999987664211 2233455667777888999999999999998866555545444444
Q ss_pred -HHHhcccH-------HHHHHHHHHHHH
Q 047359 403 -RLCHLKEL-------RKAMKNHDEMLK 422 (440)
Q Consensus 403 -~~~~~g~~-------~~a~~~~~~m~~ 422 (440)
++...|+. ++|.++|.+...
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 34466777 888888877643
No 232
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.83 E-value=0.0086 Score=52.71 Aligned_cols=97 Identities=13% Similarity=0.020 Sum_probs=69.6
Q ss_pred chhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCH----HhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHH
Q 047359 324 DSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDV----ATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVI 399 (440)
Q Consensus 324 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 399 (440)
+...++.+..+|...|++++|+..|++.++.+ |+. .+|..+..+|...|+.++|+..++++.+.+.. .|..
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~---~f~~ 148 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNL---KFST 148 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcch---hHHH
Confidence 56678889999999999999999999998854 443 45899999999999999999999999886311 2221
Q ss_pred HHH--HHHhcccHHHHHHHHHHHHHCCC
Q 047359 400 VVS--RLCHLKELRKAMKNHDEMLKMGH 425 (440)
Q Consensus 400 l~~--~~~~~g~~~~a~~~~~~m~~~~~ 425 (440)
+.. .+....+..+..++++.+.+-|.
T Consensus 149 i~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 149 ILNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred HHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 111 11122334466677777777554
No 233
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.77 E-value=0.22 Score=40.47 Aligned_cols=56 Identities=14% Similarity=0.052 Sum_probs=33.4
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHHcCCC---chhhHHHHHHHHHhcccHHHHHHHHHHHH
Q 047359 366 LLDGLFKDGRMEEAVRIFDYMKELKVV---SSSSFVIVVSRLCHLKELRKAMKNHDEML 421 (440)
Q Consensus 366 l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 421 (440)
+.+-|.+.|.+..|..-+++|.+.-+. ....+..+..+|...|-.++|...-+-+.
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 445566667777777777776666433 22345556666666776666665544443
No 234
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.61 E-value=0.26 Score=44.70 Aligned_cols=156 Identities=11% Similarity=0.063 Sum_probs=76.8
Q ss_pred HccCCcchHHHHHHHHHhcCCccChHhHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHH
Q 047359 23 SHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSGKFEVVL 102 (440)
Q Consensus 23 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 102 (440)
.-.++++++.+..+.-.-.. .......+.++..+-+.|..+.|+++.. |+. .-.....+.|+++.|.
T Consensus 272 v~~~d~~~v~~~i~~~~ll~-~i~~~~~~~i~~fL~~~G~~e~AL~~~~---------D~~---~rFeLAl~lg~L~~A~ 338 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLP-NIPKDQGQSIARFLEKKGYPELALQFVT---------DPD---HRFELALQLGNLDIAL 338 (443)
T ss_dssp HHTT-HHH-----HHHHTGG-G--HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-HHHHH
T ss_pred HHcCChhhhhhhhhhhhhcc-cCChhHHHHHHHHHHHCCCHHHHHhhcC---------ChH---HHhHHHHhcCCHHHHH
Confidence 34556666555543111000 0113346666666667777777766532 221 1234445667777776
Q ss_pred HHHhcccCCchhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCc
Q 047359 103 GLLDSGIYSSVMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPK 182 (440)
Q Consensus 103 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 182 (440)
++.++.. +...|..|.....+.|+++-|.+.|.+... +..|+-.|.-.|+.+...++.+.....|
T Consensus 339 ~~a~~~~-~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d----------~~~L~lLy~~~g~~~~L~kl~~~a~~~~---- 403 (443)
T PF04053_consen 339 EIAKELD-DPEKWKQLGDEALRQGNIELAEECYQKAKD----------FSGLLLLYSSTGDREKLSKLAKIAEERG---- 403 (443)
T ss_dssp HHCCCCS-THHHHHHHHHHHHHTTBHHHHHHHHHHCT-----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT----
T ss_pred HHHHhcC-cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC----------ccccHHHHHHhCCHHHHHHHHHHHHHcc----
Confidence 6665553 445677777777777777777776666643 4445555555666666555555554433
Q ss_pred ccccchHHHHHHHhhcCcHHHHHHHHHH
Q 047359 183 HFLSGNDYVIQKLSDMGKTYAAEMIFKR 210 (440)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 210 (440)
-++....++.-.|+.++..+++.+
T Consensus 404 ----~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 404 ----DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp -----HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred ----CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 233344444455555555555433
No 235
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.56 E-value=0.49 Score=41.75 Aligned_cols=382 Identities=11% Similarity=0.068 Sum_probs=198.8
Q ss_pred hHHHHHHHHHhcCCccChHhHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhccc
Q 047359 30 DGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSGKFEVVLGLLDSGI 109 (440)
Q Consensus 30 ~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 109 (440)
+-+++=+++.+ + +.|..+|-.|+.-+..++..++.++++++|..- ++--..+|..-+++-....++...+.+|.+..
T Consensus 27 D~lrLRerIkd-N-PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL 103 (660)
T COG5107 27 DELRLRERIKD-N-PTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCL 103 (660)
T ss_pred hHHHHHHHhhc-C-chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHH
Confidence 33444444443 3 568899999999999999999999999999752 33345678888888778889999999998877
Q ss_pred ---CCchhHHHHHHHHHhcCCh------hHHHHHHHHHhcCCCCCCchh-hHHHHH---HHHHhcCC------hhhHHHH
Q 047359 110 ---YSSVMYNLVIDFYSKKGDF------GAAFDRLNEMCNGRNLTPGFS-TYSSIL---DGARRYEK------TEVSDRI 170 (440)
Q Consensus 110 ---~~~~~~~~li~~~~~~~~~------~~a~~~~~~~~~~~~~~p~~~-~~~~l~---~~~~~~~~------~~~a~~~ 170 (440)
.+...|...+.--.+.+.. ....+.|+-.....++.|-.. .|+..+ ...-..|. .+...+.
T Consensus 104 ~k~l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~ 183 (660)
T COG5107 104 KKSLNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNG 183 (660)
T ss_pred hhhccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 5566676666544443211 122344444443345555332 333333 22222333 3445555
Q ss_pred HHHHHhcCCCCcccccchHH------HHHHHhh-------cCcHHHHHHHHHHHHh--cCCC----CCHHhHHHHHH---
Q 047359 171 VGLMVEKKLLPKHFLSGNDY------VIQKLSD-------MGKTYAAEMIFKRACD--EKIE----LQDDTCGCMLK--- 228 (440)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~------l~~~~~~-------~~~~~~a~~~~~~~~~--~~~~----~~~~~~~~l~~--- 228 (440)
+.+++...+.. ....|.. =++.... .--+-.|...++++.. .|.. .+..+++..-.
T Consensus 184 Y~ral~tP~~n--leklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~ 261 (660)
T COG5107 184 YMRALQTPMGN--LEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSD 261 (660)
T ss_pred HHHHHcCcccc--HHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhcccccccc
Confidence 55555432110 0111110 0000000 0113344555554432 1211 11222222111
Q ss_pred --------HHhh-----hccH--HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhH
Q 047359 229 --------ALSK-----EGRV--KEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMEL 293 (440)
Q Consensus 229 --------~~~~-----~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 293 (440)
-=.. .|+. ...--++++.... +......|--.-.-+...++-+.|+......... .|+...
T Consensus 262 S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~--spsL~~- 337 (660)
T COG5107 262 SNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM--SPSLTM- 337 (660)
T ss_pred chhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC--CCchhe-
Confidence 0000 0000 0011111111111 1111222222222234455666666655543322 232111
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHh--------------cCC---------------CCchhhhHHHHHHHHcCCcHHHH
Q 047359 294 SRFVASQCGKGKWKEVEELLSAVLD--------------KGL---------------LLDSFCCSSLMEYYCSNRQIDKA 344 (440)
Q Consensus 294 ~~l~~~~~~~~~~~~a~~~~~~~~~--------------~~~---------------~~~~~~~~~l~~~~~~~~~~~~a 344 (440)
.+...|...++-+.....|+.... .+. ..-...|...+..-.+..-++.|
T Consensus 338 -~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aa 416 (660)
T COG5107 338 -FLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAA 416 (660)
T ss_pred -eHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHH
Confidence 111111111222222221111100 011 01234566677777788889999
Q ss_pred HHHHHHHHhcc-CCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Q 047359 345 IALHIKIEKLK-GSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLKELRKAMKNHDEMLK 422 (440)
Q Consensus 345 ~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 422 (440)
..+|-+..+.+ ..++...+++++..++ .|+...|.++|+--....+.++.-.+..+..+.+.++-..|..+|+..+.
T Consensus 417 R~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~ 494 (660)
T COG5107 417 RKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVE 494 (660)
T ss_pred HHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHH
Confidence 99999999998 5678888999887654 67889999999988777766666666677777888888888888885543
No 236
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.51 E-value=0.15 Score=45.48 Aligned_cols=61 Identities=10% Similarity=0.104 Sum_probs=40.5
Q ss_pred HHHHHHHHcCCcHHHHHHHHHHHHhccCC-cCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHc
Q 047359 329 SSLMEYYCSNRQIDKAIALHIKIEKLKGS-LDVATYDVLLDGLFKDGRMEEAVRIFDYMKEL 389 (440)
Q Consensus 329 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 389 (440)
..+..++-+.|+.++|++.++++.+.... -+......|+.++...+.+.++..++.+-.+.
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 34555566778888888888777754322 13346667777777888888888777776543
No 237
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.50 E-value=0.22 Score=45.82 Aligned_cols=201 Identities=13% Similarity=0.093 Sum_probs=96.6
Q ss_pred ccCCCCCChHhHHHHHHHHHccCCcchHHHHHHHHHhcCCccChHhHH-----HHHHHHHhccchhHHHHHHHHHHHcCC
Q 047359 4 SCEGRDSQSDALSLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACN-----ALLDALYRQNEIRLASCLYGAMVRDGV 78 (440)
Q Consensus 4 ~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-----~ll~~~~~~~~~~~a~~~~~~~~~~~~ 78 (440)
.++|-.|+... +...++-.|++.+|-++|.+--..+- -...|+ -..+-+...|..++-..+.++-.+.
T Consensus 627 k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~enR--AlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~W-- 699 (1081)
T KOG1538|consen 627 KKRGETPNDLL---LADVFAYQGKFHEAAKLFKRSGHENR--ALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADW-- 699 (1081)
T ss_pred HhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHcCchhh--HHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHH--
Confidence 45666676654 34556667788888888765432110 011111 1123333444444433333322111
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHhcc-------------c-CCchhHHHHHHHHHhcCChhHHHHHHHHHhcCCCC
Q 047359 79 SPNKFTWSLVAQILCRSGKFEVVLGLLDSG-------------I-YSSVMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNL 144 (440)
Q Consensus 79 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-------------~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 144 (440)
..+..-=.+...++...|+.++|..+.-+- . .+..+...+..-+.+...+.-|-++|..|-.
T Consensus 700 Ar~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---- 775 (1081)
T KOG1538|consen 700 ARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD---- 775 (1081)
T ss_pred hhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc----
Confidence 011111123345556667666666554321 1 2223333334444445555666666666532
Q ss_pred CCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCcccccchHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHhHH
Q 047359 145 TPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCG 224 (440)
Q Consensus 145 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 224 (440)
...+++.+...++|++|..+-+...+. . ...|..-.+.++...++++|.+
T Consensus 776 ------~ksiVqlHve~~~W~eAFalAe~hPe~--~----~dVy~pyaqwLAE~DrFeEAqk------------------ 825 (1081)
T KOG1538|consen 776 ------LKSLVQLHVETQRWDEAFALAEKHPEF--K----DDVYMPYAQWLAENDRFEEAQK------------------ 825 (1081)
T ss_pred ------HHHHhhheeecccchHhHhhhhhCccc--c----ccccchHHHHhhhhhhHHHHHH------------------
Confidence 123455566667777776665554332 1 2234444444444444444443
Q ss_pred HHHHHHhhhccHHHHHHHHHHHHHc
Q 047359 225 CMLKALSKEGRVKEAIQIYHLISER 249 (440)
Q Consensus 225 ~l~~~~~~~~~~~~a~~~~~~~~~~ 249 (440)
+|.+.|+-.+|.++++++...
T Consensus 826 ----AfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 826 ----AFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred ----HHHHhcchHHHHHHHHHhhhh
Confidence 445566667777777766544
No 238
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.46 E-value=0.076 Score=38.52 Aligned_cols=52 Identities=8% Similarity=0.157 Sum_probs=34.5
Q ss_pred CCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHc-CCCCChhhHHHHHHHHH
Q 047359 215 KIELQDDTCGCMLKALSKEGRVKEAIQIYHLISER-GITVRDSDYYAFVNVLC 266 (440)
Q Consensus 215 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~ 266 (440)
...|+..+..+++.+|+..|++..|+++.+...+. +++.+..+|..|++-..
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 34577777777777777777777777777776554 45555666666665443
No 239
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.41 E-value=0.26 Score=36.81 Aligned_cols=111 Identities=10% Similarity=0.140 Sum_probs=67.2
Q ss_pred HHHHHHHHHccCCcchHHHHHHHHHhcCCccChHhHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 047359 15 LSLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILCR 94 (440)
Q Consensus 15 ~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 94 (440)
...++..+...+.+......++.+...+ ..+...++.++..+++.+. ++..+.++. ..+......+++.|.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~------~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDP-QKEIERLDN------KSNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH-HHHHHHHHh------ccccCCHHHHHHHHHH
Confidence 3457777777788888888888888776 3567778888888876543 333333332 1233445556777777
Q ss_pred cCChHHHHHHHhcccCCchhHHHHHHHHHhc-CChhHHHHHHHH
Q 047359 95 SGKFEVVLGLLDSGIYSSVMYNLVIDFYSKK-GDFGAAFDRLNE 137 (440)
Q Consensus 95 ~~~~~~a~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~ 137 (440)
.+-++++..++.++.. +...+..+... ++++.|.+++.+
T Consensus 82 ~~l~~~~~~l~~k~~~----~~~Al~~~l~~~~d~~~a~~~~~~ 121 (140)
T smart00299 82 AKLYEEAVELYKKDGN----FKDAIVTLIEHLGNYEKAIEYFVK 121 (140)
T ss_pred cCcHHHHHHHHHhhcC----HHHHHHHHHHcccCHHHHHHHHHh
Confidence 7777777666666532 22223333333 566666665554
No 240
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.33 E-value=0.24 Score=35.57 Aligned_cols=65 Identities=11% Similarity=0.079 Sum_probs=35.3
Q ss_pred hhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCC
Q 047359 327 CCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVV 392 (440)
Q Consensus 327 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 392 (440)
.....+......|+-+.-.+++..+.+ +-++++...-.+..+|.+.|+..++.+++.++-+.|.+
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 344455556666666666666666654 23455666666666677777777777766666666543
No 241
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.23 E-value=0.27 Score=36.18 Aligned_cols=54 Identities=20% Similarity=0.170 Sum_probs=24.7
Q ss_pred cCCCHHHHHHHHHHHHhcCCCC--chhhhHHHHHHHHcCCcHHHHHHHHHHHHhcc
Q 047359 302 GKGKWKEVEELLSAVLDKGLLL--DSFCCSSLMEYYCSNRQIDKAIALHIKIEKLK 355 (440)
Q Consensus 302 ~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 355 (440)
+.|++++|.+.|+.+...-+.. ....-..++.+|.+.+++++|...+++.++..
T Consensus 22 ~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh 77 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH 77 (142)
T ss_pred HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 3455555555555554432110 12223334445555555555555555555543
No 242
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.23 E-value=0.0068 Score=32.13 Aligned_cols=32 Identities=9% Similarity=0.161 Sum_probs=26.0
Q ss_pred HHHHHHcCCCchhhHHHHHHHHHhcccHHHHH
Q 047359 383 FDYMKELKVVSSSSFVIVVSRLCHLKELRKAM 414 (440)
Q Consensus 383 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 414 (440)
|++..+.+|.++.+|+.+...|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 56777778888888888888888888888875
No 243
>PRK11906 transcriptional regulator; Provisional
Probab=96.18 E-value=0.4 Score=42.75 Aligned_cols=148 Identities=12% Similarity=-0.022 Sum_probs=100.7
Q ss_pred ChHHHHHHHHHHHH-cCCCCC-hhhHHHHHHHHHc---------CCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcC
Q 047359 270 QPEEVCGLLRDVVE-RGYIPC-AMELSRFVASQCG---------KGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSN 338 (440)
Q Consensus 270 ~~~~a~~~~~~~~~-~~~~~~-~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 338 (440)
..+.|..+|.+... +...|+ ...|..+..++.. .....+|.++-+...+.+.. |......+..+..-.
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV-DGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhh
Confidence 35678888888872 223343 3445555444332 12345677777777777655 777777787777888
Q ss_pred CcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCC--chhhHHHHHHHHHhcccHHHHHHH
Q 047359 339 RQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVV--SSSSFVIVVSRLCHLKELRKAMKN 416 (440)
Q Consensus 339 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~ 416 (440)
++.+.|...|++....++. ...+|......+.-.|+.++|.+.+++..+..|. -.......+..|+..+ .++|+.+
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~ 429 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKL 429 (458)
T ss_pred cchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHH
Confidence 8899999999999886443 4456666667777889999999999998888877 3344444555666554 5777777
Q ss_pred HHHH
Q 047359 417 HDEM 420 (440)
Q Consensus 417 ~~~m 420 (440)
+-+-
T Consensus 430 ~~~~ 433 (458)
T PRK11906 430 YYKE 433 (458)
T ss_pred Hhhc
Confidence 7543
No 244
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.18 E-value=0.45 Score=43.20 Aligned_cols=154 Identities=14% Similarity=0.128 Sum_probs=68.5
Q ss_pred HHhccchhHHHHHHH--HHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhcccCCchhHHHHHHHHHhcCChhHHHHH
Q 047359 57 LYRQNEIRLASCLYG--AMVRDGVSPNKFTWSLVAQILCRSGKFEVVLGLLDSGIYSSVMYNLVIDFYSKKGDFGAAFDR 134 (440)
Q Consensus 57 ~~~~~~~~~a~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 134 (440)
..-.++++.+.+..+ .+.. .+ +....+.++..+.+.|..+.|+++...- ..-.....+.|+++.|.++
T Consensus 271 av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~-------~~rFeLAl~lg~L~~A~~~ 340 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVTDP-------DHRFELALQLGNLDIALEI 340 (443)
T ss_dssp HHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS-H-------HHHHHHHHHCT-HHHHHHH
T ss_pred HHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcCCh-------HHHhHHHHhcCCHHHHHHH
Confidence 334456666555543 1111 11 1334556666666666666666654331 2223344556666666555
Q ss_pred HHHHhcCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCcccccchHHHHHHHhhcCcHHHHHHHHHHHHhc
Q 047359 135 LNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDE 214 (440)
Q Consensus 135 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 214 (440)
.++. ++...|..|.....+.|+++.|++.+.+.. -+..|+-.|.-.|+.+...++.+.....
T Consensus 341 a~~~-------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~-----------d~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 341 AKEL-------DDPEKWKQLGDEALRQGNIELAEECYQKAK-----------DFSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp CCCC-------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT------------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHhc-------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc-----------CccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 3332 244466666666666666666666555432 2333444555555555555555444433
Q ss_pred CCCCCHHhHHHHHHHHhhhccHHHHHHHHH
Q 047359 215 KIELQDDTCGCMLKALSKEGRVKEAIQIYH 244 (440)
Q Consensus 215 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 244 (440)
|- ++....++...|+.++..+++.
T Consensus 403 ~~------~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 403 GD------INIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp T-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred cC------HHHHHHHHHHcCCHHHHHHHHH
Confidence 21 3333344444455555544443
No 245
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.18 E-value=0.61 Score=38.82 Aligned_cols=139 Identities=12% Similarity=0.054 Sum_probs=68.4
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHH
Q 047359 266 CKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAI 345 (440)
Q Consensus 266 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 345 (440)
...|++.+|...|+...... +-+...--.+..+|...|+.+.|..++..+....-.........-+..+.+.....+..
T Consensus 145 ~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~ 223 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQ 223 (304)
T ss_pred hhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHH
Confidence 34555666666665555442 12233444555556666666666666655543211111111112233333333333333
Q ss_pred HHHHHHHhccCCc-CHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCC--chhhHHHHHHHHHhcc
Q 047359 346 ALHIKIEKLKGSL-DVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVV--SSSSFVIVVSRLCHLK 408 (440)
Q Consensus 346 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g 408 (440)
.+-++.-. .| |...-..+...+...|+.++|.+.+-.+.+.+.. +...-..++..+.-.|
T Consensus 224 ~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 224 DLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 33333332 13 4445556666677777777777766665544333 5555556666555555
No 246
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.17 E-value=0.36 Score=36.05 Aligned_cols=86 Identities=12% Similarity=0.048 Sum_probs=46.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHc
Q 047359 258 YYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCS 337 (440)
Q Consensus 258 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 337 (440)
...++..+.+.+.+.....+++.+...+ ..+....+.++..|++.+ .++....++. .++......+++.|.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHH
Confidence 3455666666666667777777666654 345556666666666542 2333333331 1133334445556666
Q ss_pred CCcHHHHHHHHHHH
Q 047359 338 NRQIDKAIALHIKI 351 (440)
Q Consensus 338 ~~~~~~a~~~~~~~ 351 (440)
.+-++++..++.++
T Consensus 82 ~~l~~~~~~l~~k~ 95 (140)
T smart00299 82 AKLYEEAVELYKKD 95 (140)
T ss_pred cCcHHHHHHHHHhh
Confidence 66666666655544
No 247
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=96.15 E-value=0.075 Score=44.19 Aligned_cols=76 Identities=13% Similarity=0.202 Sum_probs=53.9
Q ss_pred HhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcccHHHHHHHHHHHHH-----CCCCCCHHHHHHH
Q 047359 361 ATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLKELRKAMKNHDEMLK-----MGHKPDEATYKQV 435 (440)
Q Consensus 361 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~t~~~l 435 (440)
.++..++..+..+|+.+.+.+.++++....|.+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+...+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 35566667777777777777777777777777777777777777777777777777776654 5777776665554
Q ss_pred h
Q 047359 436 I 436 (440)
Q Consensus 436 l 436 (440)
.
T Consensus 234 ~ 234 (280)
T COG3629 234 E 234 (280)
T ss_pred H
Confidence 3
No 248
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.15 E-value=0.048 Score=44.55 Aligned_cols=91 Identities=15% Similarity=0.183 Sum_probs=72.3
Q ss_pred CCCCChHhHHHHHHHHHcc-----CCcchHHHHHHHHHhcCCccChHhHHHHHHHHHhcc----------------chhH
Q 047359 7 GRDSQSDALSLVLDCYSHK-----GLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQN----------------EIRL 65 (440)
Q Consensus 7 g~~~~~~~~~~li~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~----------------~~~~ 65 (440)
|-..|-.+|-..+..+... +..+=....+..|.+.|+..|..+|+.|+..+-+.. +-+-
T Consensus 62 ~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C 141 (406)
T KOG3941|consen 62 PEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNC 141 (406)
T ss_pred cccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhH
Confidence 3456677787777777543 456666677889999999999999999998876532 2345
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 047359 66 ASCLYGAMVRDGVSPNKFTWSLVAQILCRSGK 97 (440)
Q Consensus 66 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 97 (440)
+++++++|..+|+.||..+-..|++++.+.+-
T Consensus 142 ~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 142 AIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 78999999999999999999999999988774
No 249
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.12 E-value=0.55 Score=37.83 Aligned_cols=55 Identities=18% Similarity=0.207 Sum_probs=31.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcC---CCCChhhHHHHHHHHHcCCCHHHHHHHH
Q 047359 258 YYAFVNVLCKEHQPEEVCGLLRDVVERG---YIPCAMELSRFVASQCGKGKWKEVEELL 313 (440)
Q Consensus 258 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 313 (440)
|...|-.+.-..++..|.+.++.-.+.+ -+.+..+...|+.+| ..|+.+++.+++
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 4444445555667777777777644321 123455666666665 346666665554
No 250
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.08 E-value=0.57 Score=43.17 Aligned_cols=162 Identities=19% Similarity=0.170 Sum_probs=84.2
Q ss_pred HHHHHHHHhhhccHHHHHHHHHHHHHcC-CCCCh-----hhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCChhh
Q 047359 223 CGCMLKALSKEGRVKEAIQIYHLISERG-ITVRD-----SDYYAFVNVLCK----EHQPEEVCGLLRDVVERGYIPCAME 292 (440)
Q Consensus 223 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-----~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 292 (440)
+..+++...=.||-+.+++.+.+..+.+ +.... -.|..++..++. ..+.+.|.++++.+.+. -|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 3344444555566666666666554432 11110 112222222222 34556677777777665 355554
Q ss_pred HHHH-HHHHHcCCCHHHHHHHHHHHHhcC---CCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHH
Q 047359 293 LSRF-VASQCGKGKWKEVEELLSAVLDKG---LLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLD 368 (440)
Q Consensus 293 ~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 368 (440)
|... .+.+...|++++|.+.|++..... .+.....+-.+...+....++++|.+.|.++.+..- -+..+|..+..
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~-WSka~Y~Y~~a 347 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK-WSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc-cHHHHHHHHHH
Confidence 4333 233445677777777777654211 112233444555566677778888777777776422 13334433332
Q ss_pred -HHHhcCcH-------HHHHHHHHHHH
Q 047359 369 -GLFKDGRM-------EEAVRIFDYMK 387 (440)
Q Consensus 369 -~~~~~g~~-------~~a~~~~~~~~ 387 (440)
++...|+. ++|.++|.++.
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 34455666 67777776653
No 251
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.08 E-value=0.61 Score=44.50 Aligned_cols=50 Identities=12% Similarity=0.252 Sum_probs=22.3
Q ss_pred HHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHH
Q 047359 229 ALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLR 279 (440)
Q Consensus 229 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 279 (440)
-|....+...--.+++.+.+.|.. +...-..|+.+|.+.++.++-.++.+
T Consensus 406 kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~ 455 (933)
T KOG2114|consen 406 KFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFIS 455 (933)
T ss_pred HhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHh
Confidence 334444444444444444444443 33334444555555555444444443
No 252
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.05 E-value=1.5 Score=42.10 Aligned_cols=68 Identities=7% Similarity=0.039 Sum_probs=38.2
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcccHHHHHHHHHHHH----HCCCCCCHHHHHHH
Q 047359 365 VLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLKELRKAMKNHDEML----KMGHKPDEATYKQV 435 (440)
Q Consensus 365 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~----~~~~~p~~~t~~~l 435 (440)
-++..+.+..+.+++..+.+.. |..+|..|..++..+.+.+..+...+...+.+ .....|-......|
T Consensus 710 dl~~~~~q~~d~E~~it~~~~~---g~~~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~~I~~~~~ippl~VL~~L 781 (933)
T KOG2114|consen 710 DLMLYFQQISDPETVITLCERL---GKEDPSLWLHALKYFVSEESIEDCYEIVYKVLEAIEMQERIPPLHVLQIL 781 (933)
T ss_pred HHHHHHHHhhChHHHHHHHHHh---CccChHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhcccCCHHHHHHHH
Confidence 3445555666666666555433 33477778888888887775555544444333 33444544444443
No 253
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.01 E-value=0.33 Score=43.20 Aligned_cols=64 Identities=11% Similarity=0.097 Sum_probs=42.5
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 047359 254 RDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCA----MELSRFVASQCGKGKWKEVEELLSAVLDK 319 (440)
Q Consensus 254 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 319 (440)
+...++.+..+|...|++++|+..|+..++.+ |+. .+|..+..+|...|+.++|...+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34566667777777777777777777766643 443 24666777777777777777777777664
No 254
>PRK11906 transcriptional regulator; Provisional
Probab=95.99 E-value=0.71 Score=41.27 Aligned_cols=149 Identities=13% Similarity=0.033 Sum_probs=96.1
Q ss_pred cHHHHHHHHHHHHHc-CCCCC-hhhHHHHHHHHHh---------cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcC
Q 047359 235 RVKEAIQIYHLISER-GITVR-DSDYYAFVNVLCK---------EHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGK 303 (440)
Q Consensus 235 ~~~~a~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 303 (440)
..+.|+.+|.+.... ...|+ ...|..+..++.. .....+|..+.+...+.+ +.|......+..+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 456788899988822 23333 3445444444322 123445666777777765 45677777777767777
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHH---hHHHHHHHHHhcCcHHHHH
Q 047359 304 GKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVA---TYDVLLDGLFKDGRMEEAV 380 (440)
Q Consensus 304 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~g~~~~a~ 380 (440)
++++.|...|++....++. ...+|........-.|+.++|.+.+++..+. .|... .....++.|... ..+.|+
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~~~~~~~~~~~~~~~~-~~~~~~ 427 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRRKAVVIKECVDMYVPN-PLKNNI 427 (458)
T ss_pred cchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CchhhHHHHHHHHHHHHcCC-chhhhH
Confidence 8899999999999887544 4555666666677889999999999998774 33322 223334455544 467777
Q ss_pred HHHHHHHH
Q 047359 381 RIFDYMKE 388 (440)
Q Consensus 381 ~~~~~~~~ 388 (440)
+++-+-.+
T Consensus 428 ~~~~~~~~ 435 (458)
T PRK11906 428 KLYYKETE 435 (458)
T ss_pred HHHhhccc
Confidence 77755433
No 255
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.98 E-value=0.028 Score=31.96 Aligned_cols=40 Identities=13% Similarity=0.175 Sum_probs=32.8
Q ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 047359 394 SSSFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDEATYKQV 435 (440)
Q Consensus 394 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~l 435 (440)
+.++..+...|.+.|++++|.++|++.++ ..|+.......
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~--~~P~~~~a~~~ 40 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALA--LDPDDPEAWRA 40 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCCHHHHHH
Confidence 35688899999999999999999999999 46776554433
No 256
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.95 E-value=0.71 Score=39.55 Aligned_cols=125 Identities=14% Similarity=0.161 Sum_probs=56.2
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhc-----CCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhc----cCCcCHH-----
Q 047359 296 FVASQCGKGKWKEVEELLSAVLDK-----GLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKL----KGSLDVA----- 361 (440)
Q Consensus 296 l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p~~~----- 361 (440)
+..++...+.++++++.|+...+. +.......+..|-..|.+..|+++|.-+..+..+. +++--..
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 444444455555555555555432 11112334555555555556666555544443321 1110001
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHHcCCC------chhhHHHHHHHHHhcccHHHHHHHHHHH
Q 047359 362 TYDVLLDGLFKDGRMEEAVRIFDYMKELKVV------SSSSFVIVVSRLCHLKELRKAMKNHDEM 420 (440)
Q Consensus 362 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~m 420 (440)
....+..++...|+...|.+..++..+.... .......+.+.|...|+.+.|+.-|+..
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 1122333455555555555555554332211 2223344555555666666655555443
No 257
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.93 E-value=0.82 Score=38.12 Aligned_cols=120 Identities=17% Similarity=0.101 Sum_probs=49.5
Q ss_pred HhhcCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHH
Q 047359 195 LSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEV 274 (440)
Q Consensus 195 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 274 (440)
....|++..|...|+........ +...--.+..+|...|+.+.|..++..+....-.........-+..+.+.....+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 33444555555555554444333 23334445555555555555555555544332111111111222333333333333
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 047359 275 CGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVL 317 (440)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 317 (440)
..+-...-.. +-|...-..+...+...|+.+.|.+.+-.+.
T Consensus 223 ~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l 263 (304)
T COG3118 223 QDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALL 263 (304)
T ss_pred HHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3333333221 1133333444444555555555555444443
No 258
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.90 E-value=0.39 Score=40.56 Aligned_cols=153 Identities=10% Similarity=0.018 Sum_probs=91.5
Q ss_pred hhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhH----HHHHHHHHcCCCHH
Q 047359 232 KEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMEL----SRFVASQCGKGKWK 307 (440)
Q Consensus 232 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~ 307 (440)
..|++.+|-..++++.+.- +.|...+...=.+|.-.|+.+.-...++.+... ..++...| ..+.-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 3566666666777776653 346666666677777788877777777777654 12333222 23334445667788
Q ss_pred HHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhc---cCCcCHHhHHHHHHHHHhcCcHHHHHHHHH
Q 047359 308 EVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKL---KGSLDVATYDVLLDGLFKDGRMEEAVRIFD 384 (440)
Q Consensus 308 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 384 (440)
+|++.-++..+.+.. |...-....+.+...|+..++.++..+-... +.-.-...|-...-.+...+.++.|+++|+
T Consensus 193 dAEk~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 888777777765433 5556666667777777788777775544321 100111223333344556677888888877
Q ss_pred HHH
Q 047359 385 YMK 387 (440)
Q Consensus 385 ~~~ 387 (440)
.-.
T Consensus 272 ~ei 274 (491)
T KOG2610|consen 272 REI 274 (491)
T ss_pred HHH
Confidence 543
No 259
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.89 E-value=0.95 Score=38.66 Aligned_cols=138 Identities=9% Similarity=0.059 Sum_probs=73.8
Q ss_pred hhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhcccCCchhHHHHHHHHHhcCChhHHHHHHHHHhcCC
Q 047359 63 IRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSGKFEVVLGLLDSGIYSSVMYNLVIDFYSKKGDFGAAFDRLNEMCNGR 142 (440)
Q Consensus 63 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 142 (440)
+++...+++.|.+.|+..+..+|.+..-..... +-+... ....+|..+|+.|++..
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~-~~~~~~-----------------------~~~~ra~~iy~~mKk~H 133 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEE-EKEDYD-----------------------EIIQRAKEIYKEMKKKH 133 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhc-ccccHH-----------------------HHHHHHHHHHHHHHHhC
Confidence 566788899999999988876665543333221 111111 12356788889998733
Q ss_pred CC--CCchhhHHHHHHHHHhcCCh----hhHHHHHHHHHhcCCCCcccccchHHHHHHHhhcCc--HHHHHHHHHHHHhc
Q 047359 143 NL--TPGFSTYSSILDGARRYEKT----EVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGK--TYAAEMIFKRACDE 214 (440)
Q Consensus 143 ~~--~p~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~ 214 (440)
.. .++..++..++.. ..++. +.++.+++.+.+.|+...+.......++.......+ ..++.++++.+.+.
T Consensus 134 ~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~ 211 (297)
T PF13170_consen 134 PFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN 211 (297)
T ss_pred ccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc
Confidence 32 2344455555543 23332 455666777777676665433333333333322222 22455556666666
Q ss_pred CCCCCHHhHHHH
Q 047359 215 KIELQDDTCGCM 226 (440)
Q Consensus 215 ~~~~~~~~~~~l 226 (440)
++++....|..+
T Consensus 212 ~~kik~~~yp~l 223 (297)
T PF13170_consen 212 GVKIKYMHYPTL 223 (297)
T ss_pred CCccccccccHH
Confidence 555555444433
No 260
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.88 E-value=1.2 Score=40.20 Aligned_cols=150 Identities=14% Similarity=0.036 Sum_probs=84.8
Q ss_pred HHHHHHhhcCcHHHHHHHHHHHHhcCCCCCH-HhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 047359 190 YVIQKLSDMGKTYAAEMIFKRACDEKIELQD-DTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKE 268 (440)
Q Consensus 190 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 268 (440)
.++.-.-+..+.+.-.+.-++..+.. ||. ..|..| +--......++++++++..+.|-. .+. +.
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~--pdCAdAYILL--AEEeA~Ti~Eae~l~rqAvkAgE~----~lg-------~s 237 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEIN--PDCADAYILL--AEEEASTIVEAEELLRQAVKAGEA----SLG-------KS 237 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhh--hhhhHHHhhc--ccccccCHHHHHHHHHHHHHHHHH----hhc-------hh
Confidence 34444445555555555555555432 322 222211 222345567788888777665321 110 00
Q ss_pred CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCC-CchhhhHHHHHHHHcCCcHHHHHHH
Q 047359 269 HQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLL-LDSFCCSSLMEYYCSNRQIDKAIAL 347 (440)
Q Consensus 269 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~ 347 (440)
......-..++........|-..+-..+..++.+.|+.++|.+.++++.+.... .+......|+.++...+.+.++..+
T Consensus 238 ~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~l 317 (539)
T PF04184_consen 238 QFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQAL 317 (539)
T ss_pred hhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHH
Confidence 000000011122222222233344455777778889999999999999875432 2445777899999999999999999
Q ss_pred HHHHHhc
Q 047359 348 HIKIEKL 354 (440)
Q Consensus 348 ~~~~~~~ 354 (440)
+.+-.+.
T Consensus 318 L~kYdDi 324 (539)
T PF04184_consen 318 LAKYDDI 324 (539)
T ss_pred HHHhccc
Confidence 9987653
No 261
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.85 E-value=0.5 Score=40.43 Aligned_cols=167 Identities=10% Similarity=-0.035 Sum_probs=85.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCch---hhHHHHHHHHHhcCChhhHHHHHHHHHhcCC---CCcccccch
Q 047359 115 YNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGF---STYSSILDGARRYEKTEVSDRIVGLMVEKKL---LPKHFLSGN 188 (440)
Q Consensus 115 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~ 188 (440)
|..+.+++-+.-++.+++.+-..-....|..|.. ....++..++.-.+.++++++.|+...+... +|.--..++
T Consensus 86 ~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvc 165 (518)
T KOG1941|consen 86 YLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVC 165 (518)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehh
Confidence 4444444444445555555544443322333311 1223344555555666777776666554211 111114566
Q ss_pred HHHHHHHhhcCcHHHHHHHHHHHHhc----CCCCCH-HhH-----HHHHHHHhhhccHHHHHHHHHHHHHc----CCCC-
Q 047359 189 DYVIQKLSDMGKTYAAEMIFKRACDE----KIELQD-DTC-----GCMLKALSKEGRVKEAIQIYHLISER----GITV- 253 (440)
Q Consensus 189 ~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~- 253 (440)
..+...|.+..|+++|.-+..+..+. ++. |. .-| ..|.-++...|...+|.+.-++..+. |-.+
T Consensus 166 v~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 166 VSLGSLFAQLKDYEKALFFPCKAAELVNSYGLK-DWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcC-chhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 67777777777777777665554331 221 11 112 22334556667777777666655432 3221
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 047359 254 RDSDYYAFVNVLCKEHQPEEVCGLLRDVV 282 (440)
Q Consensus 254 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 282 (440)
-......+.+.|...|+.+.|+.-++...
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 12334456666777777777777666543
No 262
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.83 E-value=0.83 Score=37.45 Aligned_cols=88 Identities=20% Similarity=0.166 Sum_probs=42.0
Q ss_pred HHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcccHHHHH
Q 047359 335 YCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLKELRKAM 414 (440)
Q Consensus 335 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 414 (440)
+...++.+.+...+.+..+.........+..+...+...++.+.|...+.......+.....+..+...+...|..+++.
T Consensus 177 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (291)
T COG0457 177 LEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEAL 256 (291)
T ss_pred HHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHH
Confidence 34445555555555555543111123444555555555555555555555555544332233333333333444455555
Q ss_pred HHHHHHHH
Q 047359 415 KNHDEMLK 422 (440)
Q Consensus 415 ~~~~~m~~ 422 (440)
..+.+...
T Consensus 257 ~~~~~~~~ 264 (291)
T COG0457 257 EALEKALE 264 (291)
T ss_pred HHHHHHHH
Confidence 55555444
No 263
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.72 E-value=0.22 Score=40.91 Aligned_cols=98 Identities=16% Similarity=0.140 Sum_probs=42.3
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcCCCCcccccchHHHHHHHhhcCcHHHHHHHHHHHHhcCCC-C-CHHhHHHHHH
Q 047359 151 YSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIE-L-QDDTCGCMLK 228 (440)
Q Consensus 151 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~ 228 (440)
|+.-+.. .+.|++..|...|...++...........+.-|..++...|++++|..+|..+.+.-+. | -+..+-.+..
T Consensus 145 Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 145 YNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 4444432 34555666666666666544222111223333444444445554444444444433211 0 1123333334
Q ss_pred HHhhhccHHHHHHHHHHHHHc
Q 047359 229 ALSKEGRVKEAIQIYHLISER 249 (440)
Q Consensus 229 ~~~~~~~~~~a~~~~~~~~~~ 249 (440)
+..+.|+.++|..+|+++.+.
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHH
Confidence 444444444444444444443
No 264
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.63 E-value=0.99 Score=36.87 Aligned_cols=183 Identities=13% Similarity=0.031 Sum_probs=101.1
Q ss_pred HHHHHhhcCcHHHHHHHHHHHHhcCCC--CCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 047359 191 VIQKLSDMGKTYAAEMIFKRACDEKIE--LQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKE 268 (440)
Q Consensus 191 l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 268 (440)
-+..-.+.|++++|.+.|+.+....+- -...+.-.++.++.+.++++.|+...++.....+.....-|...|.+++.-
T Consensus 40 ~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~ 119 (254)
T COG4105 40 EGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYF 119 (254)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHh
Confidence 344445567777777777777654332 123344556666777788888888777777765444444555555555421
Q ss_pred -------CChH---HHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcC
Q 047359 269 -------HQPE---EVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSN 338 (440)
Q Consensus 269 -------~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 338 (440)
.+.. +|..-|+.+++. -|++. -...|..-+..+... =...=..+.+.|.+.
T Consensus 120 ~~i~~~~rDq~~~~~A~~~f~~~i~r--yPnS~-------------Ya~dA~~~i~~~~d~----LA~~Em~IaryY~kr 180 (254)
T COG4105 120 FQIDDVTRDQSAARAAFAAFKELVQR--YPNSR-------------YAPDAKARIVKLNDA----LAGHEMAIARYYLKR 180 (254)
T ss_pred ccCCccccCHHHHHHHHHHHHHHHHH--CCCCc-------------chhhHHHHHHHHHHH----HHHHHHHHHHHHHHh
Confidence 2222 233333333332 12221 112222222222111 000112356678899
Q ss_pred CcHHHHHHHHHHHHhccCCcCH---HhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCc
Q 047359 339 RQIDKAIALHIKIEKLKGSLDV---ATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVS 393 (440)
Q Consensus 339 ~~~~~a~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 393 (440)
|.+..|..-++++++. .+-+. ..+-.+..+|...|-.++|.+.-+-+....|.+
T Consensus 181 ~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 181 GAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS 237 (254)
T ss_pred cChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence 9999999999999886 32233 345566778888898888887766555544443
No 265
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.60 E-value=0.32 Score=34.86 Aligned_cols=93 Identities=13% Similarity=-0.030 Sum_probs=57.2
Q ss_pred HHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCH---HhHHHHHHHHHhcCc
Q 047359 299 SQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDV---ATYDVLLDGLFKDGR 375 (440)
Q Consensus 299 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~ 375 (440)
+....|+++.|++.|.+....-++ ....||.-.+++--.|+.++|+.-+++..+..-..+. ..|..-...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 445567777777777777665333 5666777777777777777777777776654221122 223333344566677
Q ss_pred HHHHHHHHHHHHHcCCC
Q 047359 376 MEEAVRIFDYMKELKVV 392 (440)
Q Consensus 376 ~~~a~~~~~~~~~~~~~ 392 (440)
.+.|..-|+...+.|.+
T Consensus 131 dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGSK 147 (175)
T ss_pred hHHHHHhHHHHHHhCCH
Confidence 77777777777666644
No 266
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=95.46 E-value=0.83 Score=34.89 Aligned_cols=134 Identities=13% Similarity=0.109 Sum_probs=69.2
Q ss_pred HHHHHHHhcCCccChHhHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhcccCCc
Q 047359 33 EVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSGKFEVVLGLLDSGIYSS 112 (440)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 112 (440)
+.++.+.+.+++|+...+..+++.+.+.|++....+ +.+.++-+|.......+-.+. +....+.++=-+|....
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkRL 88 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKRL 88 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHHh
Confidence 445555666777777777777777777777544333 334444444443332222221 12222222222222111
Q ss_pred h-hHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 047359 113 V-MYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEK 177 (440)
Q Consensus 113 ~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 177 (440)
. .+..++..+...|++-+|+++...... -+......++.+..+.+|...-..+++-..++
T Consensus 89 ~~~~~~iievLL~~g~vl~ALr~ar~~~~-----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 89 GTAYEEIIEVLLSKGQVLEALRYARQYHK-----VDSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHcCC-----cccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2 455666667777777777777766532 11122344566666666665555555555543
No 267
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.42 E-value=1.4 Score=37.36 Aligned_cols=155 Identities=12% Similarity=-0.009 Sum_probs=107.1
Q ss_pred HhhcCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChh--hH--HHHHHHHHhcCC
Q 047359 195 LSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDS--DY--YAFVNVLCKEHQ 270 (440)
Q Consensus 195 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~--~~l~~~~~~~~~ 270 (440)
....|+..+|-..++++.+.-+. |...++-.=.+|.-.|+.+.....++++... ..+|.. +| ..+.-++...|-
T Consensus 113 ~~~~g~~h~a~~~wdklL~d~Pt-Dlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDDYPT-DLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hhccccccHHHHHHHHHHHhCch-hhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhcc
Confidence 34578888888889998887554 7778888888899999999999999888765 112332 22 333445568899
Q ss_pred hHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhc---CCCCchhhhHHHHHHHHcCCcHHHHHHH
Q 047359 271 PEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDK---GLLLDSFCCSSLMEYYCSNRQIDKAIAL 347 (440)
Q Consensus 271 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 347 (440)
+++|++.-++..+-+ +.|.-.-.+....+-..|+..++.++..+-... +.-.-...|-...-.+...+.++.|+++
T Consensus 191 y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 191 YDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred chhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 999999999888764 345445556666677789999998887665432 1111122233333445677899999999
Q ss_pred HHHHH
Q 047359 348 HIKIE 352 (440)
Q Consensus 348 ~~~~~ 352 (440)
|++-+
T Consensus 270 yD~ei 274 (491)
T KOG2610|consen 270 YDREI 274 (491)
T ss_pred HHHHH
Confidence 98654
No 268
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.38 E-value=0.48 Score=33.99 Aligned_cols=91 Identities=13% Similarity=-0.067 Sum_probs=52.1
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchh---hhHHHHHHHHcCCc
Q 047359 264 VLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSF---CCSSLMEYYCSNRQ 340 (440)
Q Consensus 264 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~ 340 (440)
++...|+.+.|++.|...+.. .+.....||.-..++.-.|+.++|+.-+++..+..-..... .|..-...|-..|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 455666777777777666654 23455667777777766777777776666665532111211 12222234555666
Q ss_pred HHHHHHHHHHHHhcc
Q 047359 341 IDKAIALHIKIEKLK 355 (440)
Q Consensus 341 ~~~a~~~~~~~~~~~ 355 (440)
.+.|..-|+..-+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 666666666666654
No 269
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.37 E-value=0.23 Score=40.80 Aligned_cols=69 Identities=14% Similarity=0.151 Sum_probs=35.9
Q ss_pred cHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcC----------------cHHHHHHHHHHHHHcCCC-chhhHHHHHH
Q 047359 340 QIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDG----------------RMEEAVRIFDYMKELKVV-SSSSFVIVVS 402 (440)
Q Consensus 340 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g----------------~~~~a~~~~~~~~~~~~~-~~~~~~~l~~ 402 (440)
..+-....++.|.+-|+.-|..+|+.|+..+-+.. +-+-++.++++|...|+- |..+-..++.
T Consensus 87 HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn 166 (406)
T KOG3941|consen 87 HVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVN 166 (406)
T ss_pred hHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHH
Confidence 34444445555666666666666666665443321 122345555555555554 5555555555
Q ss_pred HHHhcc
Q 047359 403 RLCHLK 408 (440)
Q Consensus 403 ~~~~~g 408 (440)
++.+.|
T Consensus 167 ~FGr~~ 172 (406)
T KOG3941|consen 167 AFGRWN 172 (406)
T ss_pred Hhcccc
Confidence 555444
No 270
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.29 E-value=0.81 Score=33.74 Aligned_cols=74 Identities=9% Similarity=-0.034 Sum_probs=42.2
Q ss_pred HHhcCChhhHHHHHHHHHhcCCCCcccccchHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHh
Q 047359 158 ARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALS 231 (440)
Q Consensus 158 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 231 (440)
..+.|++++|.+.|+.+..+-..+.-...+-..++.+|.+.++++.|...+++..+.++.....-|...+.+++
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 44567777777777777665322221234445566667777777777777776666555433344444444443
No 271
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.27 E-value=1.7 Score=37.22 Aligned_cols=133 Identities=16% Similarity=0.192 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh--cC----ChHHHHHHHHHHHHcCC---CCChhhHHHHHHHHHcCCCH
Q 047359 236 VKEAIQIYHLISERGITVRDSDYYAFVNVLCK--EH----QPEEVCGLLRDVVERGY---IPCAMELSRFVASQCGKGKW 306 (440)
Q Consensus 236 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~ 306 (440)
+++.+.+++.+.+.|+.-+..+|.+....... .. ....+..+++.|++... .++...+..++.. ..+++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34555677777777777666555543333322 12 24567778888876532 2344455555433 22332
Q ss_pred ----HHHHHHHHHHHhcCCCCch--hhhHHHHHHHHcCCc--HHHHHHHHHHHHhccCCcCHHhHHHHHHHH
Q 047359 307 ----KEVEELLSAVLDKGLLLDS--FCCSSLMEYYCSNRQ--IDKAIALHIKIEKLKGSLDVATYDVLLDGL 370 (440)
Q Consensus 307 ----~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 370 (440)
+.++..|+.+.+.|+..+. ...+.++..+....+ ..++.++++.+.+.|+++....|..+.-..
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHH
Confidence 4566677777776655432 233333333322222 346778888888888887777766654433
No 272
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.11 E-value=4.2 Score=40.93 Aligned_cols=83 Identities=19% Similarity=0.204 Sum_probs=44.1
Q ss_pred HHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcccH
Q 047359 331 LMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLKEL 410 (440)
Q Consensus 331 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 410 (440)
.+.+|..+|++.+|..+..++....-. -..+-..|+.-+...+++-+|-++..+..+. .. ..+..|++...|
T Consensus 971 Al~a~~~~~dWr~~l~~a~ql~~~~de-~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~~----~av~ll~ka~~~ 1042 (1265)
T KOG1920|consen 971 ALKAYKECGDWREALSLAAQLSEGKDE-LVILAEELVSRLVEQRKHYEAAKILLEYLSD---PE----EAVALLCKAKEW 1042 (1265)
T ss_pred HHHHHHHhccHHHHHHHHHhhcCCHHH-HHHHHHHHHHHHHHcccchhHHHHHHHHhcC---HH----HHHHHHhhHhHH
Confidence 344555556666665555544321000 1112255666677777777777777665542 22 233345555667
Q ss_pred HHHHHHHHHHH
Q 047359 411 RKAMKNHDEML 421 (440)
Q Consensus 411 ~~a~~~~~~m~ 421 (440)
++|+.+.....
T Consensus 1043 ~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1043 EEALRVASKAK 1053 (1265)
T ss_pred HHHHHHHHhcc
Confidence 77777655443
No 273
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.88 E-value=0.067 Score=28.18 Aligned_cols=28 Identities=11% Similarity=0.210 Sum_probs=17.9
Q ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHH
Q 047359 395 SSFVIVVSRLCHLKELRKAMKNHDEMLK 422 (440)
Q Consensus 395 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 422 (440)
.+|..++.++...|++++|+..|++.++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 3566666666677777777777766666
No 274
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=94.77 E-value=1.4 Score=33.71 Aligned_cols=99 Identities=13% Similarity=0.147 Sum_probs=58.0
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhccc-CCchhHHHHHHHHHhcC--ChhHHHHHHHHHhcCCC
Q 047359 67 SCLYGAMVRDGVSPNKFTWSLVAQILCRSGKFEVVLGLLDSGI-YSSVMYNLVIDFYSKKG--DFGAAFDRLNEMCNGRN 143 (440)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~ 143 (440)
.+.++.+.+.+++|+...+..+++.+.+.|++....+++..-. +|.......+-.+.... -.+-|++++.++..
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~~--- 90 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLGT--- 90 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhhh---
Confidence 4566677778888888899999999998888887777766544 44444433332222110 12223333333321
Q ss_pred CCCchhhHHHHHHHHHhcCChhhHHHHHHHH
Q 047359 144 LTPGFSTYSSILDGARRYEKTEVSDRIVGLM 174 (440)
Q Consensus 144 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 174 (440)
.+..+++.+...|++-+|.++....
T Consensus 91 ------~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 91 ------AYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred ------hHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 2444555666666666666665554
No 275
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.76 E-value=0.42 Score=37.26 Aligned_cols=61 Identities=15% Similarity=0.024 Sum_probs=25.1
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcCCCCcccccchHHHHHHHhhcCcHHHHHHHHHHH
Q 047359 151 YSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRA 211 (440)
Q Consensus 151 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 211 (440)
+..+...|.+.|+.+.|.+.+.++.+....+.+....+..+++.....+++..+...+.+.
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3334444444444444444444444433333322333333444444444444444444333
No 276
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.71 E-value=2.4 Score=36.13 Aligned_cols=163 Identities=12% Similarity=-0.017 Sum_probs=87.2
Q ss_pred hhHHHHHHHHHhcCChH---HHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHH
Q 047359 256 SDYYAFVNVLCKEHQPE---EVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLM 332 (440)
Q Consensus 256 ~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 332 (440)
.+...++.++...+..+ +|..+++.+... .+-....+..-+..+.+.++.+.+.+.+.+|...-.. ....+..++
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~-~e~~~~~~l 162 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDH-SESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhccc-ccchHHHHH
Confidence 45566777777776654 455555555433 2222344445566666678888999999988875221 233444444
Q ss_pred HHH---HcCCcHHHHHHHHHHHHhccCCcCHH-hHHHH-HH---HHHhcCc------HHHHHHHHHHHHH-cCCC-chhh
Q 047359 333 EYY---CSNRQIDKAIALHIKIEKLKGSLDVA-TYDVL-LD---GLFKDGR------MEEAVRIFDYMKE-LKVV-SSSS 396 (440)
Q Consensus 333 ~~~---~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l-~~---~~~~~g~------~~~a~~~~~~~~~-~~~~-~~~~ 396 (440)
..+ .. .....|...+..+....+.|... ....+ +. ...+.++ .+....+++.+.+ .+.+ +..+
T Consensus 163 ~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~ 241 (278)
T PF08631_consen 163 HHIKQLAE-KSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEA 241 (278)
T ss_pred HHHHHHHh-hCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 444 33 23456666666666555555543 22111 11 1122211 4445555554332 2222 3332
Q ss_pred ---HHHH----HHHHHhcccHHHHHHHHHHHH
Q 047359 397 ---FVIV----VSRLCHLKELRKAMKNHDEML 421 (440)
Q Consensus 397 ---~~~l----~~~~~~~g~~~~a~~~~~~m~ 421 (440)
..++ +..+.+.+++++|.+.|+-..
T Consensus 242 ~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 242 ASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 2233 334567899999999988544
No 277
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.71 E-value=0.077 Score=27.86 Aligned_cols=28 Identities=11% Similarity=0.243 Sum_probs=17.8
Q ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHH
Q 047359 395 SSFVIVVSRLCHLKELRKAMKNHDEMLK 422 (440)
Q Consensus 395 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 422 (440)
..+..+...+...|++++|++.+++.++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3455666666677777777777776665
No 278
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.70 E-value=0.65 Score=36.17 Aligned_cols=97 Identities=15% Similarity=0.091 Sum_probs=60.2
Q ss_pred HHHcCCCHHHHHHHHHHHHhcCCCCc----hhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcC
Q 047359 299 SQCGKGKWKEVEELLSAVLDKGLLLD----SFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDG 374 (440)
Q Consensus 299 ~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 374 (440)
-+.+.|++++|..-|...+..-+... ...|..-..++.+.+.++.|++-..+.++.++. .......-..+|.+..
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKME 182 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhhh
Confidence 45667888888888887776532211 123333344566777777777777777765432 2233333445677777
Q ss_pred cHHHHHHHHHHHHHcCCCchhh
Q 047359 375 RMEEAVRIFDYMKELKVVSSSS 396 (440)
Q Consensus 375 ~~~~a~~~~~~~~~~~~~~~~~ 396 (440)
.+++|++-|+++.+..|....+
T Consensus 183 k~eealeDyKki~E~dPs~~ea 204 (271)
T KOG4234|consen 183 KYEEALEDYKKILESDPSRREA 204 (271)
T ss_pred hHHHHHHHHHHHHHhCcchHHH
Confidence 7888888888888776663333
No 279
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.51 E-value=0.1 Score=28.02 Aligned_cols=26 Identities=12% Similarity=0.089 Sum_probs=19.5
Q ss_pred hHHHHHHHHHhcccHHHHHHHHHHHH
Q 047359 396 SFVIVVSRLCHLKELRKAMKNHDEML 421 (440)
Q Consensus 396 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 421 (440)
++..|...|.+.|++++|++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36677888888888888888888854
No 280
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=94.51 E-value=0.056 Score=40.62 Aligned_cols=129 Identities=9% Similarity=0.072 Sum_probs=75.7
Q ss_pred HHHHHHHccCCcchHHHHHHHHHhcCCccChHhHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 047359 17 LVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSG 96 (440)
Q Consensus 17 ~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 96 (440)
.+++.+.+.+.++.....++.+...+...+....+.++..|++.++.+...++++.. +..-...++..|.+.|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHG 84 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcc
Confidence 356677778888888888888887665566778888888888887777777776621 1133344666677777
Q ss_pred ChHHHHHHHhcccCCchhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCchhhHHHHHHHHHhcCC
Q 047359 97 KFEVVLGLLDSGIYSSVMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEK 163 (440)
Q Consensus 97 ~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 163 (440)
.++++..++.++.....+ +..+...++++.|.+.+.+ .++...|..+++.+...+.
T Consensus 85 l~~~a~~Ly~~~~~~~~a----l~i~~~~~~~~~a~e~~~~-------~~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 85 LYEEAVYLYSKLGNHDEA----LEILHKLKDYEEAIEYAKK-------VDDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp SHHHHHHHHHCCTTHTTC----SSTSSSTHCSCCCTTTGGG-------CSSSHHHHHHHHHHCTSTC
T ss_pred hHHHHHHHHHHcccHHHH----HHHHHHHccHHHHHHHHHh-------cCcHHHHHHHHHHHHhcCc
Confidence 777666665554300000 0012222333333322222 2456788888887766554
No 281
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=94.36 E-value=0.83 Score=35.05 Aligned_cols=28 Identities=7% Similarity=0.109 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHcCCCchhhHHHHHHHHH
Q 047359 378 EAVRIFDYMKELKVVSSSSFVIVVSRLC 405 (440)
Q Consensus 378 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 405 (440)
+|+.-|+++...+|....++..+..+|.
T Consensus 53 dAisK~eeAL~I~P~~hdAlw~lGnA~t 80 (186)
T PF06552_consen 53 DAISKFEEALKINPNKHDALWCLGNAYT 80 (186)
T ss_dssp HHHHHHHHHHHH-TT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 3444444444444444444444444444
No 282
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.36 E-value=0.54 Score=39.29 Aligned_cols=61 Identities=8% Similarity=0.003 Sum_probs=34.4
Q ss_pred HhHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhccc
Q 047359 48 SACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSGKFEVVLGLLDSGI 109 (440)
Q Consensus 48 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 109 (440)
.++..++..+...|+++.+.+.++++.... +-+...|..++.+|.+.|+...|+..|+++.
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 345555555555666666666666655543 2355556666666666666666665555543
No 283
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.29 E-value=0.91 Score=35.43 Aligned_cols=95 Identities=11% Similarity=0.030 Sum_probs=57.5
Q ss_pred hhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCH--HhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCC--chhhHH--HH
Q 047359 327 CCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDV--ATYDVLLDGLFKDGRMEEAVRIFDYMKELKVV--SSSSFV--IV 400 (440)
Q Consensus 327 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~--~l 400 (440)
.+..+...|.+.|+.+.|.+.|.++.+....|.. ..+-.++......+++..+...+.++...--. ++..-+ ..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 4556777777778888888877777765444332 34556677777777777777777666543211 222211 11
Q ss_pred --HHHHHhcccHHHHHHHHHHHH
Q 047359 401 --VSRLCHLKELRKAMKNHDEML 421 (440)
Q Consensus 401 --~~~~~~~g~~~~a~~~~~~m~ 421 (440)
.-.+...+++.+|-+.|-+..
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHccC
Confidence 123345678888887776654
No 284
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.23 E-value=1.9 Score=32.92 Aligned_cols=124 Identities=13% Similarity=0.025 Sum_probs=54.5
Q ss_pred HhcCChhhHHHHHHHHHhcCCCCcccccchHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHH-hHHHH--HHHHhhhcc
Q 047359 159 RRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDD-TCGCM--LKALSKEGR 235 (440)
Q Consensus 159 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l--~~~~~~~~~ 235 (440)
.+.+..++|+.-|..+.+.|...-. ..............|+...|...|+++-.....|-.. -..-+ .-.+...|.
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~Yp-vLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYP-VLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcch-HHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 4455566666666666665421110 1112222334455566666666666655543333222 00111 112234455
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047359 236 VKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVE 283 (440)
Q Consensus 236 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 283 (440)
+++...-.+.+...+-+.....-..|.-+-.+.|++..|.+.|..+..
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 555544444443333222222333344444455555555555555544
No 285
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.06 E-value=3.4 Score=35.22 Aligned_cols=18 Identities=17% Similarity=0.196 Sum_probs=11.3
Q ss_pred HHcCCCHHHHHHHHHHHH
Q 047359 300 QCGKGKWKEVEELLSAVL 317 (440)
Q Consensus 300 ~~~~~~~~~a~~~~~~~~ 317 (440)
+.+.++++.|.+.|+-..
T Consensus 256 ~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHhhcCHHHHHHHHHHHH
Confidence 345677777777776443
No 286
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.96 E-value=2 Score=32.39 Aligned_cols=19 Identities=26% Similarity=0.391 Sum_probs=9.8
Q ss_pred HHhcCChhHHHHHHHHHhc
Q 047359 122 YSKKGDFGAAFDRLNEMCN 140 (440)
Q Consensus 122 ~~~~~~~~~a~~~~~~~~~ 140 (440)
+...|++.+|..+|+++..
T Consensus 54 ~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 54 HIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHHhCCHHHHHHHHHHHhc
Confidence 4445555555555555533
No 287
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=93.94 E-value=6.3 Score=37.97 Aligned_cols=18 Identities=17% Similarity=0.265 Sum_probs=11.3
Q ss_pred HHhcccHHHHHHHHHHHH
Q 047359 404 LCHLKELRKAMKNHDEML 421 (440)
Q Consensus 404 ~~~~g~~~~a~~~~~~m~ 421 (440)
+...|++++|++.++++.
T Consensus 515 ~~~~g~~~~AL~~i~~L~ 532 (613)
T PF04097_consen 515 LYHAGQYEQALDIIEKLD 532 (613)
T ss_dssp HHHTT-HHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHhCC
Confidence 346788888877666543
No 288
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=93.72 E-value=0.028 Score=42.28 Aligned_cols=87 Identities=15% Similarity=0.211 Sum_probs=66.0
Q ss_pred HHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhcccCCchhHHHHHHHHHhcCChhHH
Q 047359 52 ALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSGKFEVVLGLLDSGIYSSVMYNLVIDFYSKKGDFGAA 131 (440)
Q Consensus 52 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 131 (440)
.++..+.+.+.++....+++.+...+...+....+.++..|++.++.+...++++... ..-...++..|.+.|.+++|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~--~yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN--NYDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS--SS-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc--ccCHHHHHHHHHhcchHHHH
Confidence 4567777788899999999999987666678889999999999998899998888543 23345667777777888888
Q ss_pred HHHHHHHhc
Q 047359 132 FDRLNEMCN 140 (440)
Q Consensus 132 ~~~~~~~~~ 140 (440)
.-++.++..
T Consensus 90 ~~Ly~~~~~ 98 (143)
T PF00637_consen 90 VYLYSKLGN 98 (143)
T ss_dssp HHHHHCCTT
T ss_pred HHHHHHccc
Confidence 777777643
No 289
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=93.62 E-value=6.9 Score=37.38 Aligned_cols=76 Identities=5% Similarity=0.030 Sum_probs=26.5
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHH
Q 047359 275 CGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIE 352 (440)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 352 (440)
...++.+..+-...+......++..|.+.|-.+.|.++.+.+-..-. ...-|..-+..+.++|+......+...+.
T Consensus 390 ~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 390 RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33344444332223344445555666666666666666655543321 12234444445555555555444444443
No 290
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=93.54 E-value=0.1 Score=27.56 Aligned_cols=31 Identities=26% Similarity=0.396 Sum_probs=19.0
Q ss_pred HHHHhccCCcCHHhHHHHHHHHHhcCcHHHHH
Q 047359 349 IKIEKLKGSLDVATYDVLLDGLFKDGRMEEAV 380 (440)
Q Consensus 349 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 380 (440)
++.++..+. +...|..+...|...|++++|+
T Consensus 3 ~kAie~~P~-n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELNPN-NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHCCC-CHHHHHHHHHHHHHCcCHHhhc
Confidence 444444333 5667777777777777777664
No 291
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.53 E-value=1.7 Score=36.59 Aligned_cols=99 Identities=12% Similarity=0.109 Sum_probs=49.6
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHH
Q 047359 254 RDSDYYAFVNVLCKEHQPEEVCGLLRDVVER---GYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSS 330 (440)
Q Consensus 254 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 330 (440)
+..+...++..-....+++.+...+-.+... ...|+...+ +.++.+. .-++++++.++..=...|+-||..+++.
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~c~ 140 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTFCL 140 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHHH-ccChHHHHHHHhCcchhccccchhhHHH
Confidence 3444444444444455566666555555432 111111111 1222222 2345566665555556666666666666
Q ss_pred HHHHHHcCCcHHHHHHHHHHHHhc
Q 047359 331 LMEYYCSNRQIDKAIALHIKIEKL 354 (440)
Q Consensus 331 l~~~~~~~~~~~~a~~~~~~~~~~ 354 (440)
++..+.+.+++.+|.++...|...
T Consensus 141 l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 141 LMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHH
Confidence 666666666666666665555543
No 292
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.40 E-value=0.31 Score=25.41 Aligned_cols=30 Identities=27% Similarity=0.386 Sum_probs=18.4
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHHcCC
Q 047359 362 TYDVLLDGLFKDGRMEEAVRIFDYMKELKV 391 (440)
Q Consensus 362 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 391 (440)
.|..+...+...|++++|++.|++..+..|
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 455566666666777777777666666544
No 293
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=93.40 E-value=0.52 Score=39.95 Aligned_cols=92 Identities=15% Similarity=0.066 Sum_probs=49.4
Q ss_pred HHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHH
Q 047359 299 SQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEE 378 (440)
Q Consensus 299 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 378 (440)
-|.++|.+++|+..|.......+. |++++..-..+|.+...+..|+.-....+..+- .-...|..-+.+-...|...+
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~~P~-NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~-~Y~KAYSRR~~AR~~Lg~~~E 183 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAVYPH-NPVYHINRALAYLKQKSFAQAEEDCEAAIALDK-LYVKAYSRRMQARESLGNNME 183 (536)
T ss_pred hhhhccchhHHHHHhhhhhccCCC-CccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHhhHHH
Confidence 466677777777777666554322 566666666667777666666665555544211 112233333333333445555
Q ss_pred HHHHHHHHHHcCCC
Q 047359 379 AVRIFDYMKELKVV 392 (440)
Q Consensus 379 a~~~~~~~~~~~~~ 392 (440)
|.+-++...+..|.
T Consensus 184 AKkD~E~vL~LEP~ 197 (536)
T KOG4648|consen 184 AKKDCETVLALEPK 197 (536)
T ss_pred HHHhHHHHHhhCcc
Confidence 55555555555444
No 294
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.30 E-value=0.32 Score=25.48 Aligned_cols=30 Identities=30% Similarity=0.391 Sum_probs=18.2
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHHcCC
Q 047359 362 TYDVLLDGLFKDGRMEEAVRIFDYMKELKV 391 (440)
Q Consensus 362 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 391 (440)
+|..+..+|...|++++|+..|+++.+.+|
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 455666666666666666666666665544
No 295
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.24 E-value=0.25 Score=26.45 Aligned_cols=26 Identities=15% Similarity=0.181 Sum_probs=19.5
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHH
Q 047359 362 TYDVLLDGLFKDGRMEEAVRIFDYMK 387 (440)
Q Consensus 362 ~~~~l~~~~~~~g~~~~a~~~~~~~~ 387 (440)
+|..|...|.+.|++++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36677888888888888888888744
No 296
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.09 E-value=3 Score=31.56 Aligned_cols=53 Identities=17% Similarity=-0.094 Sum_probs=30.6
Q ss_pred HcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhc
Q 047359 301 CGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKL 354 (440)
Q Consensus 301 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 354 (440)
.+.++.+++..++..+.-..+. ....-..-...+...|++.+|..+|+++...
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~-~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPE-FPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 4456777777777777654322 1111122233456777777777777776654
No 297
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.02 E-value=1.5 Score=40.40 Aligned_cols=98 Identities=15% Similarity=0.069 Sum_probs=44.4
Q ss_pred HhcCChhhHHHHHHHHHhcCCCCcccccchHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHH
Q 047359 159 RRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKE 238 (440)
Q Consensus 159 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 238 (440)
.+.|+++.|.++..+... ..-|..|.++....+++..|.+.|....+ |..|+-.+...|+.+.
T Consensus 648 l~lgrl~iA~~la~e~~s--------~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~ 710 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEANS--------EVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEG 710 (794)
T ss_pred hhcCcHHHHHHHHHhhcc--------hHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhH
Confidence 345555555554433321 34455555555555555555555544332 3334444444555444
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHH
Q 047359 239 AIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLR 279 (440)
Q Consensus 239 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 279 (440)
...+-....+.|.. |...-++...|+++++.+++.
T Consensus 711 l~~la~~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 711 LAVLASLAKKQGKN------NLAFLAYFLSGDYEECLELLI 745 (794)
T ss_pred HHHHHHHHHhhccc------chHHHHHHHcCCHHHHHHHHH
Confidence 44444444443321 122223334455555555443
No 298
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=93.01 E-value=4.2 Score=33.10 Aligned_cols=205 Identities=19% Similarity=0.079 Sum_probs=110.8
Q ss_pred cchHHHHHHHhhcCcHHHHHHHHHHHHhc-CCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHH-
Q 047359 186 SGNDYVIQKLSDMGKTYAAEMIFKRACDE-KIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVN- 263 (440)
Q Consensus 186 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~- 263 (440)
..+......+...+++..+...+...... ........+......+...+++..+...+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 34444555555566666666555555432 122233444445555555566666666666665543332 111222222
Q ss_pred HHHhcCChHHHHHHHHHHHHcCC--CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcH
Q 047359 264 VLCKEHQPEEVCGLLRDVVERGY--IPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQI 341 (440)
Q Consensus 264 ~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 341 (440)
.+...|+++.+...+........ ......+......+...++.+.+...+..............+..+...+...++.
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 56666777777777776644211 0122223333333445667777777777776653221345566666677777777
Q ss_pred HHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCC
Q 047359 342 DKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVV 392 (440)
Q Consensus 342 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 392 (440)
+.|...+......... ....+..+...+...+..+.+...+.......+.
T Consensus 219 ~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 219 EEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 7777777777764222 2334444444444666677777777777765443
No 299
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=92.74 E-value=8.3 Score=35.81 Aligned_cols=374 Identities=8% Similarity=0.005 Sum_probs=186.0
Q ss_pred HHHHHHHHHccCCcchHHHHHHHHHhcCCccChHhHHHHHHHHH-hccchhHHHHHHHHHHHc-CCC-CChhhHHHHHHH
Q 047359 15 LSLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALY-RQNEIRLASCLYGAMVRD-GVS-PNKFTWSLVAQI 91 (440)
Q Consensus 15 ~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~-~~~-~~~~~~~~l~~~ 91 (440)
|......=.+.|..+.+.++|++... +++.+...|...+..+. ..|+.+.....|+..... |.. .+...|...|..
T Consensus 82 W~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~ 160 (577)
T KOG1258|consen 82 WKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEF 160 (577)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHH
Confidence 44444555677899999999999986 45667777777665544 457888888999888664 322 134567888888
Q ss_pred HHhcCChHHHHHHHhccc-CCchhHHHHHHHHHh---c------CChhHHHHHHHHHhcC---CCCCCchhhHHHHHHHH
Q 047359 92 LCRSGKFEVVLGLLDSGI-YSSVMYNLVIDFYSK---K------GDFGAAFDRLNEMCNG---RNLTPGFSTYSSILDGA 158 (440)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~-~~~~~~~~li~~~~~---~------~~~~~a~~~~~~~~~~---~~~~p~~~~~~~l~~~~ 158 (440)
-...+++.....+++++. -....|+..-.-|.+ . ...+++.++-...... ....+.......-+.-.
T Consensus 161 en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~ 240 (577)
T KOG1258|consen 161 ENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDS 240 (577)
T ss_pred HhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhc
Confidence 788889999999999987 222233333322222 1 1222222222111110 00000001111111000
Q ss_pred H-hcCChhhHHHHHHHHHhcCCCCcccccchHHHHHHHhhcCcHHHHHHHHHHHHhcC---C----CCCHHhHHHHHHHH
Q 047359 159 R-RYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEK---I----ELQDDTCGCMLKAL 230 (440)
Q Consensus 159 ~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~----~~~~~~~~~l~~~~ 230 (440)
. ..+..+.+.....+.... --..+............++.-.+.. + .++..+|...+.--
T Consensus 241 ~~~s~~l~~~~~~l~~~~~~-------------~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~ 307 (577)
T KOG1258|consen 241 TDPSKSLTEEKTILKRIVSI-------------HEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFE 307 (577)
T ss_pred cCccchhhHHHHHHHHHHHH-------------HHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhh
Confidence 0 000011111111111000 0011111122222222333322211 1 12344677777777
Q ss_pred hhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHH-cCCCHHHH
Q 047359 231 SKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQC-GKGKWKEV 309 (440)
Q Consensus 231 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a 309 (440)
.+.|+.+.+.-+|+...-.--. =...|-..+.-....|+.+-|..++....+-..+ +......+-..+. ..|+++.|
T Consensus 308 i~~g~~~~~~~l~ercli~cA~-Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k-~~~~i~L~~a~f~e~~~n~~~A 385 (577)
T KOG1258|consen 308 ITLGDFSRVFILFERCLIPCAL-YDEFWIKYARWMESSGDVSLANNVLARACKIHVK-KTPIIHLLEARFEESNGNFDDA 385 (577)
T ss_pred hhcccHHHHHHHHHHHHhHHhh-hHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCC-CCcHHHHHHHHHHHhhccHHHH
Confidence 7778888877777776542111 1123333444444447777777776665544322 2222222222222 34788888
Q ss_pred HHHHHHHHhcCCCCchh-hhHHHHHHHHcCCcHHHHH---HHHHHHHhccCCcCHHhHHHHHHH-----HHhcCcHHHHH
Q 047359 310 EELLSAVLDKGLLLDSF-CCSSLMEYYCSNRQIDKAI---ALHIKIEKLKGSLDVATYDVLLDG-----LFKDGRMEEAV 380 (440)
Q Consensus 310 ~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~---~~~~~~~~~~~~p~~~~~~~l~~~-----~~~~g~~~~a~ 380 (440)
..+++.+...- |+.. .-..-+....+.|..+.+. +++........ +..+...+.-- +.-.++.+.|.
T Consensus 386 ~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~--~~~i~~~l~~~~~r~~~~i~~d~~~a~ 461 (577)
T KOG1258|consen 386 KVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKE--NNGILEKLYVKFARLRYKIREDADLAR 461 (577)
T ss_pred HHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccccc--CcchhHHHHHHHHHHHHHHhcCHHHHH
Confidence 88888887653 3322 1122233445666766666 33332222111 22222222221 23457788888
Q ss_pred HHHHHHHHcCCCchhhHHHHHHHHHhcc
Q 047359 381 RIFDYMKELKVVSSSSFVIVVSRLCHLK 408 (440)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g 408 (440)
.++.++.+..+.+...|..++......+
T Consensus 462 ~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 462 IILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 8888888877777777777777665544
No 300
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=92.57 E-value=4.5 Score=32.28 Aligned_cols=186 Identities=15% Similarity=0.066 Sum_probs=89.2
Q ss_pred HHhhcCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHH
Q 047359 194 KLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEE 273 (440)
Q Consensus 194 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 273 (440)
.|-..|-+.-|.--|.+.....+. -+.+||-+.-.+...|+++.|.+.|+...+.++.-+-...|.-+. +.--|++.-
T Consensus 74 lYDSlGL~~LAR~DftQaLai~P~-m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~L 151 (297)
T COG4785 74 LYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKL 151 (297)
T ss_pred hhhhhhHHHHHhhhhhhhhhcCCC-cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHh
Confidence 344555555666555555544333 355677777777777888888888887777654433333333232 224467777
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHH-HcCCCHHHHHHHHHH-HHhcCCCCchhhhHHH-HHHHHcCCcHHHHHHHHHH
Q 047359 274 VCGLLRDVVERGYIPCAMELSRFVASQ-CGKGKWKEVEELLSA-VLDKGLLLDSFCCSSL-MEYYCSNRQIDKAIALHIK 350 (440)
Q Consensus 274 a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~ 350 (440)
|.+-+...-+.+ |+. -|.++---. -..-++.+|..-+.+ .... +..-|... +..|...=..+ .++++
T Consensus 152 Aq~d~~~fYQ~D--~~D-PfR~LWLYl~E~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~yLgkiS~e---~l~~~ 221 (297)
T COG4785 152 AQDDLLAFYQDD--PND-PFRSLWLYLNEQKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFYLGKISEE---TLMER 221 (297)
T ss_pred hHHHHHHHHhcC--CCC-hHHHHHHHHHHhhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHHHhhccHH---HHHHH
Confidence 766555554432 111 122221111 122345555443332 2222 33333322 22232211122 22222
Q ss_pred HHhccC------CcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCC
Q 047359 351 IEKLKG------SLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKV 391 (440)
Q Consensus 351 ~~~~~~------~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 391 (440)
+..-.- ..-..||-.|..-+...|+.++|..+|+-....++
T Consensus 222 ~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 222 LKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred HHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 222100 01123556666667777777777777776666543
No 301
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=92.53 E-value=11 Score=36.55 Aligned_cols=48 Identities=15% Similarity=0.164 Sum_probs=31.6
Q ss_pred HhcCcHHHHHHHHHHHHHcCCC---------chhhHHHHHHHHHhcccHHHHHHHHH
Q 047359 371 FKDGRMEEAVRIFDYMKELKVV---------SSSSFVIVVSRLCHLKELRKAMKNHD 418 (440)
Q Consensus 371 ~~~g~~~~a~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~g~~~~a~~~~~ 418 (440)
.-.|++..|...++.+.+.... .+..+...+-.+...|+.+.|...|.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 3567888888888888754321 12333334444456789999999997
No 302
>PRK11619 lytic murein transglycosylase; Provisional
Probab=92.46 E-value=11 Score=36.53 Aligned_cols=110 Identities=5% Similarity=-0.004 Sum_probs=46.8
Q ss_pred HhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhccc--CCch-hHHHHHHHHHhcCChhHHHHH
Q 047359 58 YRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSGKFEVVLGLLDSGI--YSSV-MYNLVIDFYSKKGDFGAAFDR 134 (440)
Q Consensus 58 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~-~~~~li~~~~~~~~~~~a~~~ 134 (440)
.+.|++..+.++...+....+ ..-..|..+.... .....++...++++.. |-.. .-...+..+.+.+++...++.
T Consensus 44 ~~~g~~~~~~~~~~~l~d~pL-~~yl~y~~L~~~l-~~~~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~ 121 (644)
T PRK11619 44 WDNRQMDVVEQLMPTLKDYPL-YPYLEYRQLTQDL-MNQPAVQVTNFIRANPTLPPARSLQSRFVNELARREDWRGLLAF 121 (644)
T ss_pred HHCCCHHHHHHHHHhccCCCc-HhHHHHHHHHhcc-ccCCHHHHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHHHh
Confidence 345666666666555532211 1111222222111 1223555555555544 2111 122333344455555554442
Q ss_pred HHHHhcCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHH
Q 047359 135 LNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMV 175 (440)
Q Consensus 135 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 175 (440)
+.. .+.+...-.....+....|+.++|......+=
T Consensus 122 ~~~------~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW 156 (644)
T PRK11619 122 SPE------KPKPVEARCNYYYAKWATGQQQEAWQGAKELW 156 (644)
T ss_pred cCC------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 111 12233333455556666676665555444443
No 303
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=92.41 E-value=4.7 Score=32.16 Aligned_cols=64 Identities=17% Similarity=0.021 Sum_probs=30.2
Q ss_pred ccchHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHc
Q 047359 185 LSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISER 249 (440)
Q Consensus 185 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 249 (440)
+.+||.+.-.+...|+++.|.+.|+...+.++.-+-...|--|. +.-.|++.-|.+-+...-+.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~d~~~fYQ~ 162 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQDDLLAFYQD 162 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHHHHHHHHhc
Confidence 44555555555555666666666655555443322222222221 22235555555544444443
No 304
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.37 E-value=3.5 Score=30.64 Aligned_cols=53 Identities=8% Similarity=-0.182 Sum_probs=29.7
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhcc
Q 047359 302 GKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLK 355 (440)
Q Consensus 302 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 355 (440)
..++++++..++..+.-..++ ....-..-...+...|++++|.++|+++.+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~-~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPN-LKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCC-ccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 356777777777777654322 11111222334566677777777777776643
No 305
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=92.21 E-value=22 Score=39.32 Aligned_cols=152 Identities=10% Similarity=0.009 Sum_probs=91.5
Q ss_pred HHHHHHHhccchhHHHHHHHHHHHcCC--CCChhhHHHHHHHHHhcCChHHHHHHHhcccCCchhHHHHHHHHHhcCChh
Q 047359 52 ALLDALYRQNEIRLASCLYGAMVRDGV--SPNKFTWSLVAQILCRSGKFEVVLGLLDSGIYSSVMYNLVIDFYSKKGDFG 129 (440)
Q Consensus 52 ~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~ 129 (440)
.+..+-.+.+.+..|...++.-..... .....-+..+...|+..+++|....+...-..+.. ...-|......|++.
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s-l~~qil~~e~~g~~~ 1466 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS-LYQQILEHEASGNWA 1466 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc-HHHHHHHHHhhccHH
Confidence 344556677888999988888311111 11223344555589999999888777663221222 233445566789999
Q ss_pred HHHHHHHHHhcCCCCCCc-hhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCcccccchHHHHHHHhhcCcHHHHHHHH
Q 047359 130 AAFDRLNEMCNGRNLTPG-FSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIF 208 (440)
Q Consensus 130 ~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 208 (440)
.|...|+.+.+ ..|+ ..+++.++......|.++......+-..... .+. ....++.=..+-.+.++++.....+
T Consensus 1467 da~~Cye~~~q---~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~-~~~~~s~~~eaaW~l~qwD~~e~~l 1541 (2382)
T KOG0890|consen 1467 DAAACYERLIQ---KDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEE-VDELNSLGVEAAWRLSQWDLLESYL 1541 (2382)
T ss_pred HHHHHHHHhhc---CCCccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHH-HHHHHHHHHHHHhhhcchhhhhhhh
Confidence 99999999966 5565 5577777776667777777666555444332 111 0112222334446677777776665
Q ss_pred H
Q 047359 209 K 209 (440)
Q Consensus 209 ~ 209 (440)
.
T Consensus 1542 ~ 1542 (2382)
T KOG0890|consen 1542 S 1542 (2382)
T ss_pred h
Confidence 5
No 306
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.14 E-value=11 Score=35.86 Aligned_cols=279 Identities=14% Similarity=0.051 Sum_probs=157.8
Q ss_pred hhHHHHHHHHHhcCCCCC-CchhhHHHHHHH-HHhcCChhhHHHHHHHHHh-------cCCCCcccccchHHHHHHHhhc
Q 047359 128 FGAAFDRLNEMCNGRNLT-PGFSTYSSILDG-ARRYEKTEVSDRIVGLMVE-------KKLLPKHFLSGNDYVIQKLSDM 198 (440)
Q Consensus 128 ~~~a~~~~~~~~~~~~~~-p~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~~~l~~~~~~~ 198 (440)
...|.+.++...+ .|.. +-...=.....+ .....+.+.|...++...+ .+ . ......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~-~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~--~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAK-LGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---L--PPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHh-hcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---C--CccccHHHHHHhcC
Confidence 4567888888766 3322 111111112222 4466788999999988877 44 2 34556677777774
Q ss_pred C-----cHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhh-hccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH--hcCC
Q 047359 199 G-----KTYAAEMIFKRACDEKIELQDDTCGCMLKALSK-EGRVKEAIQIYHLISERGITVRDSDYYAFVNVLC--KEHQ 270 (440)
Q Consensus 199 ~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~ 270 (440)
. +.+.|..++....+.|.. +....-..+..... ..+...|.++|...-+.|..+ ...+..++.... ...+
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~-A~~~la~~y~~G~gv~r~ 379 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHIL-AIYRLALCYELGLGVERN 379 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChH-HHHHHHHHHHhCCCcCCC
Confidence 3 677799999988887653 44333322222222 256789999999999888642 222222221111 3347
Q ss_pred hHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHH-H---HHc----CCcHH
Q 047359 271 PEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLME-Y---YCS----NRQID 342 (440)
Q Consensus 271 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~---~~~----~~~~~ 342 (440)
...|..+++...+.| .|...--...+..+.. +.++.+.-.+..+...|.. ...+-...+. . ... ..+.+
T Consensus 380 ~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~-~~q~~a~~l~~~~~~~~~~~~~~~~~~ 456 (552)
T KOG1550|consen 380 LELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE-VAQSNAAYLLDQSEEDLFSRGVISTLE 456 (552)
T ss_pred HHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh-HHhhHHHHHHHhccccccccccccchh
Confidence 889999999998887 3332222223333333 7777777777666665543 2222222211 1 111 22456
Q ss_pred HHHHHHHHHHhccCCcCHHhHHHHHHHHHhc----CcHHHHHHHHHHHHHcCCCchhhHHHHHHHHH----hcccHHHHH
Q 047359 343 KAIALHIKIEKLKGSLDVATYDVLLDGLFKD----GRMEEAVRIFDYMKELKVVSSSSFVIVVSRLC----HLKELRKAM 414 (440)
Q Consensus 343 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~a~ 414 (440)
.+...+.+....| +......|...|... .+.+.|...+......+ ......+...+- -.. +..|.
T Consensus 457 ~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~-~~~a~ 529 (552)
T KOG1550|consen 457 RAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKV-LHLAK 529 (552)
T ss_pred HHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcch-hHHHH
Confidence 6666666666543 444555555554433 35777877777777665 333333443332 223 67888
Q ss_pred HHHHHHHHCC
Q 047359 415 KNHDEMLKMG 424 (440)
Q Consensus 415 ~~~~~m~~~~ 424 (440)
+++++..+.+
T Consensus 530 ~~~~~~~~~~ 539 (552)
T KOG1550|consen 530 RYYDQASEED 539 (552)
T ss_pred HHHHHHHhcC
Confidence 8888877644
No 307
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=92.13 E-value=22 Score=39.26 Aligned_cols=316 Identities=12% Similarity=0.032 Sum_probs=160.4
Q ss_pred HHHHHHHhcCChHHHHHHHhccc-------CCchhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCchhhHHHHHHHHH
Q 047359 87 LVAQILCRSGKFEVVLGLLDSGI-------YSSVMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDGAR 159 (440)
Q Consensus 87 ~l~~~~~~~~~~~~a~~~~~~~~-------~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 159 (440)
.+..+-.+++.+.+|...+++-. .....|..+...|...++++....+...-.. .|+ .+. -+....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a----~~s--l~~-qil~~e 1460 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA----DPS--LYQ-QILEHE 1460 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc----Ccc--HHH-HHHHHH
Confidence 44455667788888888888732 1222355555688888888888777664221 122 222 333456
Q ss_pred hcCChhhHHHHHHHHHhcCCCCcccccchHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHhHHHH-HHHHhhhccHHH
Q 047359 160 RYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCM-LKALSKEGRVKE 238 (440)
Q Consensus 160 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~ 238 (440)
..|++..|...|+.+.+.+ |+. ...++.+++.....|.++......+-..... .+....++.+ +.+--+.++++.
T Consensus 1461 ~~g~~~da~~Cye~~~q~~--p~~-~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~ 1536 (2382)
T KOG0890|consen 1461 ASGNWADAAACYERLIQKD--PDK-EKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDL 1536 (2382)
T ss_pred hhccHHHHHHHHHHhhcCC--Ccc-ccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhh
Confidence 6789999999999988765 432 5567777777777777777776555544332 1223333322 333355666666
Q ss_pred HHHHHHHHHHcCCCCChhhHHH--HHHHHHhcC--ChHHHHHHHHHHHHcCCCC---------ChhhHHHHHHHHHcCCC
Q 047359 239 AIQIYHLISERGITVRDSDYYA--FVNVLCKEH--QPEEVCGLLRDVVERGYIP---------CAMELSRFVASQCGKGK 305 (440)
Q Consensus 239 a~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~--~~~~a~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~ 305 (440)
...... .. +..+|.. +...+.+.. +.-.-.+..+.+.+.-+.| -...|..++....-..
T Consensus 1537 ~e~~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~e- 1608 (2382)
T KOG0890|consen 1537 LESYLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLE- 1608 (2382)
T ss_pred hhhhhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHH-
Confidence 555544 11 1222222 222222222 2212222333332221111 0122333333322111
Q ss_pred HHHHHHHHHHHH-hcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHH-HhccCCc-----CHHhHHHHHHHHHhcCcHHH
Q 047359 306 WKEVEELLSAVL-DKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKI-EKLKGSL-----DVATYDVLLDGLFKDGRMEE 378 (440)
Q Consensus 306 ~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~p-----~~~~~~~l~~~~~~~g~~~~ 378 (440)
.+...+.+.... ......+...|..-+..-....+..+-+--+++. ......| -..+|-...+...+.|+++.
T Consensus 1609 l~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~ 1688 (2382)
T KOG0890|consen 1609 LENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQR 1688 (2382)
T ss_pred HHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHH
Confidence 111111111110 0001111112222222111111111111111111 1111111 24577777888888999999
Q ss_pred HHHHHHHHHHcCCCchhhHHHHHHHHHhcccHHHHHHHHHHHHHC
Q 047359 379 AVRIFDYMKELKVVSSSSFVIVVSRLCHLKELRKAMKNHDEMLKM 423 (440)
Q Consensus 379 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 423 (440)
|...+-++.+.+ -+..+...+..+...|+...|+.++++-.+.
T Consensus 1689 A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1689 AQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 998887777665 5667777888888999999999999988753
No 308
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=92.12 E-value=6.3 Score=33.01 Aligned_cols=221 Identities=14% Similarity=0.156 Sum_probs=119.6
Q ss_pred HHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhh------c-----cHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 047359 202 YAAEMIFKRACDEKIELQDDTCGCMLKALSKE------G-----RVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQ 270 (440)
Q Consensus 202 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 270 (440)
++-.+..++..+........+|...+.++... | -..+|+++|.-+.++.-+ ..+-..++..+....+
T Consensus 104 ekLnraIdr~~k~ve~~~eee~~~~iscfgg~ev~~rqg~~vkWis~KA~ELFayLv~hkgk--~v~~~~~ie~lwpe~D 181 (361)
T COG3947 104 EKLNRAIDRRLKRVELTAEEESGTQISCFGGTEVVLRQGQQVKWISRKALELFAYLVEHKGK--EVTSWEAIEALWPEKD 181 (361)
T ss_pred HHHHHHHHHHhccccccchhccCeeeEeccceeeeccCCceeeehhhHHHHHHHHHHHhcCC--cccHhHHHHHHccccc
Confidence 33334444444333333444566566555421 1 135788888888776432 2345567777777778
Q ss_pred hHHHHHHHHHHHHc---CCCC----ChhhHHHHHHHHH-c----CCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHH---
Q 047359 271 PEEVCGLLRDVVER---GYIP----CAMELSRFVASQC-G----KGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYY--- 335 (440)
Q Consensus 271 ~~~a~~~~~~~~~~---~~~~----~~~~~~~l~~~~~-~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--- 335 (440)
..+|...+....-+ ...| ...+.. =..|. . .-++.+-+...+.+...+ .+..-+..++..|
T Consensus 182 ~kka~s~lhTtvyqlRKaLs~L~~ne~vts~--d~~Ykld~~~~k~Dv~e~es~~rqi~~in--ltide~kelv~~ykgd 257 (361)
T COG3947 182 EKKASSLLHTTVYQLRKALSRLNANEAVTSQ--DRKYKLDAGLPKYDVQEYESLARQIEAIN--LTIDELKELVGQYKGD 257 (361)
T ss_pred hhhHHHHHHHHHHHHHHHhchhccCceEEEc--CCceEEecCCccccHHHHHHHhhhhhccc--cCHHHHHHHHHHhcCC
Confidence 77777766554211 0000 000000 00000 0 012233333333333322 2333344444433
Q ss_pred -HcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcccHHHHH
Q 047359 336 -CSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLKELRKAM 414 (440)
Q Consensus 336 -~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 414 (440)
.....+.-|...=+++.. .-..+++.....|..+|.+.+|.++.++....++-+...+..++..+...|+--.|.
T Consensus 258 yl~e~~y~Waedererle~----ly~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~ 333 (361)
T COG3947 258 YLPEADYPWAEDERERLEQ----LYMKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAI 333 (361)
T ss_pred cCCccccccccchHHHHHH----HHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhh
Confidence 111122222221111111 123355666778999999999999999999999889999999999999999988888
Q ss_pred HHHHHHHH-----CCCCCCHHHH
Q 047359 415 KNHDEMLK-----MGHKPDEATY 432 (440)
Q Consensus 415 ~~~~~m~~-----~~~~p~~~t~ 432 (440)
+-++++.+ -|+..|...+
T Consensus 334 khyerya~vleaelgi~vddsie 356 (361)
T COG3947 334 KHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred hHHHHHHHHHHHHhCCCcchhHH
Confidence 88777753 4666665544
No 309
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.86 E-value=5.1 Score=31.50 Aligned_cols=91 Identities=19% Similarity=0.104 Sum_probs=65.7
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCC-----hhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHc
Q 047359 263 NVLCKEHQPEEVCGLLRDVVERGYIPC-----AMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCS 337 (440)
Q Consensus 263 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 337 (440)
.-+...|++++|..-|...+..- ++. ...|..-..++.+.+.++.|+.--.+..+.++. .......-..+|.+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHh
Confidence 45678899999999999888763 222 234555566777888899888888888776543 33333344557888
Q ss_pred CCcHHHHHHHHHHHHhcc
Q 047359 338 NRQIDKAIALHIKIEKLK 355 (440)
Q Consensus 338 ~~~~~~a~~~~~~~~~~~ 355 (440)
...+++|++-|..+.+..
T Consensus 181 ~ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESD 198 (271)
T ss_pred hhhHHHHHHHHHHHHHhC
Confidence 889999999999988853
No 310
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.82 E-value=4.7 Score=30.87 Aligned_cols=128 Identities=16% Similarity=0.137 Sum_probs=71.5
Q ss_pred hHhHHHHHHHHHccCCcchHHHHHHHHHhcCCccChH-hHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChh-hH--HH
Q 047359 12 SDALSLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVS-ACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKF-TW--SL 87 (440)
Q Consensus 12 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~--~~ 87 (440)
...|..-+. +++.+..++|+.-|..+.+.|...-+. .--.........|+...|...|+++-.....|-.. -. ..
T Consensus 59 gd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlr 137 (221)
T COG4649 59 GDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLR 137 (221)
T ss_pred hHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHH
Confidence 344444443 356677888888888888766432111 11222344556788888888888876554333322 11 11
Q ss_pred HHHHHHhcCChHHHHHHHhcccCC-----chhHHHHHHHHHhcCChhHHHHHHHHHhc
Q 047359 88 VAQILCRSGKFEVVLGLLDSGIYS-----SVMYNLVIDFYSKKGDFGAAFDRLNEMCN 140 (440)
Q Consensus 88 l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 140 (440)
-...+...|.++......+.+..+ ...-..|.-+-.+.|++..|.+.|..+..
T Consensus 138 aa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 138 AAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 122344566677666666665511 12234455555667777777777777655
No 311
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.66 E-value=4.4 Score=37.58 Aligned_cols=99 Identities=14% Similarity=0.059 Sum_probs=50.3
Q ss_pred HhhcCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHH
Q 047359 195 LSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEV 274 (440)
Q Consensus 195 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 274 (440)
..+.|+++.|.++..+.. +..-|..|..+..+.+++..|.+.|..... |..|+-.+...|+.+..
T Consensus 647 al~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l 711 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGL 711 (794)
T ss_pred hhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHH
Confidence 345566666665554432 344566666666666666666666655433 33444455555555544
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHH
Q 047359 275 CGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLS 314 (440)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 314 (440)
..+-....+.|. .| ...-+|...|+++++.+++.
T Consensus 712 ~~la~~~~~~g~-~N-----~AF~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 712 AVLASLAKKQGK-NN-----LAFLAYFLSGDYEECLELLI 745 (794)
T ss_pred HHHHHHHHhhcc-cc-----hHHHHHHHcCCHHHHHHHHH
Confidence 444444444431 11 11223344566666655554
No 312
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=91.50 E-value=0.34 Score=25.31 Aligned_cols=27 Identities=11% Similarity=0.214 Sum_probs=15.5
Q ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHH
Q 047359 396 SFVIVVSRLCHLKELRKAMKNHDEMLK 422 (440)
Q Consensus 396 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 422 (440)
+|..+...|...|++++|...|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 345555555566666666666655554
No 313
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=91.42 E-value=6.4 Score=32.99 Aligned_cols=43 Identities=19% Similarity=0.086 Sum_probs=28.5
Q ss_pred hhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhc
Q 047359 63 IRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSGKFEVVLGLLDS 107 (440)
Q Consensus 63 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 107 (440)
..+|+++|.-++++. -...+-..++..+...-+..+|...|..
T Consensus 149 s~KA~ELFayLv~hk--gk~v~~~~~ie~lwpe~D~kka~s~lhT 191 (361)
T COG3947 149 SRKALELFAYLVEHK--GKEVTSWEAIEALWPEKDEKKASSLLHT 191 (361)
T ss_pred hhHHHHHHHHHHHhc--CCcccHhHHHHHHccccchhhHHHHHHH
Confidence 457888998887753 2334555677777777777777665543
No 314
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.38 E-value=1.2 Score=32.91 Aligned_cols=97 Identities=14% Similarity=0.032 Sum_probs=63.7
Q ss_pred HHcCCcHHHHHHHHHHHHhccCCcCHHhH-HHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcccHHHH
Q 047359 335 YCSNRQIDKAIALHIKIEKLKGSLDVATY-DVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLKELRKA 413 (440)
Q Consensus 335 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 413 (440)
-...++.+++..++..+.-. .|+..-. ..-...+...|++.+|.++|+++.+.++..+..--.+..++.-.|+. .=
T Consensus 20 aL~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp-~W 96 (153)
T TIGR02561 20 ALRSADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDA-EW 96 (153)
T ss_pred HHhcCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCCh-HH
Confidence 34688999999999999874 3433322 22234577899999999999999987655554444444444455553 23
Q ss_pred HHHHHHHHHCCCCCCHHHHHH
Q 047359 414 MKNHDEMLKMGHKPDEATYKQ 434 (440)
Q Consensus 414 ~~~~~~m~~~~~~p~~~t~~~ 434 (440)
...-.++++.|-.|+......
T Consensus 97 r~~A~~~le~~~~~~a~~Lv~ 117 (153)
T TIGR02561 97 HVHADEVLARDADADAVALVR 117 (153)
T ss_pred HHHHHHHHHhCCCHhHHHHHH
Confidence 344566667766676665543
No 315
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=91.36 E-value=4.2 Score=36.57 Aligned_cols=85 Identities=15% Similarity=0.109 Sum_probs=39.3
Q ss_pred HcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcccHHHHHH
Q 047359 336 CSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLKELRKAMK 415 (440)
Q Consensus 336 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 415 (440)
...|+++.+.+.+....+. +.....+..+++....+.|++++|...-+.|....+.++++...........|-++++..
T Consensus 334 ~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~ 412 (831)
T PRK15180 334 SHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYH 412 (831)
T ss_pred HHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHH
Confidence 3445555555544433322 222334444555555555555555555555554444444443333333334444555555
Q ss_pred HHHHHH
Q 047359 416 NHDEML 421 (440)
Q Consensus 416 ~~~~m~ 421 (440)
.|++..
T Consensus 413 ~wk~~~ 418 (831)
T PRK15180 413 YWKRVL 418 (831)
T ss_pred HHHHHh
Confidence 555444
No 316
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.27 E-value=5.1 Score=33.92 Aligned_cols=49 Identities=12% Similarity=0.170 Sum_probs=27.5
Q ss_pred cHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047359 235 RVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVE 283 (440)
Q Consensus 235 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 283 (440)
++++++.++..=++-|+-||.++++.+++.+.+.+++.+|..+.-.|..
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 4445555555555555555666666666666665555555555555443
No 317
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.14 E-value=14 Score=35.15 Aligned_cols=117 Identities=12% Similarity=0.001 Sum_probs=51.6
Q ss_pred hcCChHHHHHHHHHHHH-------cCCCCChhhHHHHHHHHHcC----C-CHHHHHHHHHHHHhcCCCCchhhhHHHHHH
Q 047359 267 KEHQPEEVCGLLRDVVE-------RGYIPCAMELSRFVASQCGK----G-KWKEVEELLSAVLDKGLLLDSFCCSSLMEY 334 (440)
Q Consensus 267 ~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~----~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 334 (440)
...+.+.|..+++.+.+ .+ .......+..+|.+. . +.+.|..++....+.|.. +.......+..
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~ 336 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYE 336 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHH
Confidence 34455555555555544 33 222333444444442 1 445566666666555432 33332222222
Q ss_pred HHc-CCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHH----hcCcHHHHHHHHHHHHHcC
Q 047359 335 YCS-NRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLF----KDGRMEEAVRIFDYMKELK 390 (440)
Q Consensus 335 ~~~-~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~g~~~~a~~~~~~~~~~~ 390 (440)
... ..+...|.++|....+.|.. . .+-.+..+|. ...+...|..++++..+.|
T Consensus 337 ~g~~~~d~~~A~~yy~~Aa~~G~~-~--A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 337 TGTKERDYRRAFEYYSLAAKAGHI-L--AIYRLALCYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred cCCccccHHHHHHHHHHHHHcCCh-H--HHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 222 23455666666666655432 1 1111111111 2235556666666666555
No 318
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=91.09 E-value=10 Score=33.50 Aligned_cols=65 Identities=11% Similarity=0.100 Sum_probs=41.1
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---ChhhHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 047359 254 RDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIP---CAMELSRFVASQCGKGKWKEVEELLSAVLD 318 (440)
Q Consensus 254 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 318 (440)
...++..+...+.+.|.++.|...+..+...+... .....-.-+...-..|+..+|...++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34566777777778888888887777776643211 223333344555556777777777777765
No 319
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=91.07 E-value=0.4 Score=24.74 Aligned_cols=26 Identities=12% Similarity=0.249 Sum_probs=15.4
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHH
Q 047359 397 FVIVVSRLCHLKELRKAMKNHDEMLK 422 (440)
Q Consensus 397 ~~~l~~~~~~~g~~~~a~~~~~~m~~ 422 (440)
+..+..++.+.|++++|.+.|+++++
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34455555666666666666666655
No 320
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=90.97 E-value=2.5 Score=33.66 Aligned_cols=76 Identities=17% Similarity=0.176 Sum_probs=54.8
Q ss_pred hhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCC---chhhHHHHHHH
Q 047359 327 CCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVV---SSSSFVIVVSR 403 (440)
Q Consensus 327 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~ 403 (440)
|.+..++.+.+.+.+.+++...+.-++.++. |...-..+++.++-.|++++|..-++-.-+..+. -...|..++.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 3445566777888889998888877776443 5566677888888999999998888877776655 33456666654
No 321
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.96 E-value=18 Score=36.03 Aligned_cols=39 Identities=13% Similarity=0.146 Sum_probs=24.5
Q ss_pred HHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHc
Q 047359 299 SQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCS 337 (440)
Q Consensus 299 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 337 (440)
.|......+-+..+++.+....-.++....+.++..|++
T Consensus 600 ~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 600 NYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred HHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 344556666777777777655444566666677766653
No 322
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=90.76 E-value=11 Score=33.30 Aligned_cols=64 Identities=16% Similarity=-0.030 Sum_probs=43.9
Q ss_pred ccchHHHHHHHhhcCcHHHHHHHHHHHHhcCCCC---CHHhHHHHHHHHhhhccHHHHHHHHHHHHH
Q 047359 185 LSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIEL---QDDTCGCMLKALSKEGRVKEAIQIYHLISE 248 (440)
Q Consensus 185 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 248 (440)
..++..+++.+.+.|.++.|...+..+...+... .+.....-++..-..|+.++|+..++....
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5567777888888888888888888777644221 233444455666677888888887777766
No 323
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=90.55 E-value=14 Score=33.89 Aligned_cols=181 Identities=13% Similarity=0.080 Sum_probs=122.6
Q ss_pred CCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHH
Q 047359 218 LQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFV 297 (440)
Q Consensus 218 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 297 (440)
.|.....+++..+.+.-+..-...+..+|..-| -+...|..++++|..+ ..++-..+|+++.+..+ .|...-..|.
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHH
Confidence 456667778888888888888888888888865 3567788888888877 66788888888887653 2444444555
Q ss_pred HHHHcCCCHHHHHHHHHHHHhcCCCC-----chhhhHHHHHHHHcCCcHHHHHHHHHHHHhc-cCCcCHHhHHHHHHHHH
Q 047359 298 ASQCGKGKWKEVEELLSAVLDKGLLL-----DSFCCSSLMEYYCSNRQIDKAIALHIKIEKL-KGSLDVATYDVLLDGLF 371 (440)
Q Consensus 298 ~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~ 371 (440)
.-|-+ ++.+.+...|.++...-++. -...|..+... -..+.+..+.+...+... |...-...+.-+-.-|.
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 55544 77888888888887653321 11234444432 134566666666666543 33444556667777888
Q ss_pred hcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHH
Q 047359 372 KDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLC 405 (440)
Q Consensus 372 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 405 (440)
...++++|++++..+.+++-.+..+-..++..+.
T Consensus 217 ~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lR 250 (711)
T COG1747 217 ENENWTEAIRILKHILEHDEKDVWARKEIIENLR 250 (711)
T ss_pred cccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHH
Confidence 8889999999999888887777766666666554
No 324
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=90.23 E-value=0.72 Score=41.11 Aligned_cols=93 Identities=11% Similarity=0.069 Sum_probs=44.2
Q ss_pred HHHcCCCHHHHHHHHHHHHhcCCCCch-hhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHH
Q 047359 299 SQCGKGKWKEVEELLSAVLDKGLLLDS-FCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRME 377 (440)
Q Consensus 299 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 377 (440)
.+...+.++.|..++.++.+.. ||. ..|..-..++.+.+++..|+.-+.++++..+. ....|..=..++.+.+.+.
T Consensus 13 ~~l~~~~fd~avdlysKaI~ld--pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~-~~K~Y~rrg~a~m~l~~~~ 89 (476)
T KOG0376|consen 13 EALKDKVFDVAVDLYSKAIELD--PNCAIYFANRALAHLKVESFGGALHDALKAIELDPT-YIKAYVRRGTAVMALGEFK 89 (476)
T ss_pred hhcccchHHHHHHHHHHHHhcC--CcceeeechhhhhheeechhhhHHHHHHhhhhcCch-hhheeeeccHHHHhHHHHH
Confidence 3344455666666666665542 322 22322234555666666666555555553211 1222322333444445555
Q ss_pred HHHHHHHHHHHcCCCch
Q 047359 378 EAVRIFDYMKELKVVSS 394 (440)
Q Consensus 378 ~a~~~~~~~~~~~~~~~ 394 (440)
+|...|+......|.++
T Consensus 90 ~A~~~l~~~~~l~Pnd~ 106 (476)
T KOG0376|consen 90 KALLDLEKVKKLAPNDP 106 (476)
T ss_pred HHHHHHHHhhhcCcCcH
Confidence 55555555555444433
No 325
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=89.99 E-value=0.84 Score=25.12 Aligned_cols=28 Identities=14% Similarity=0.134 Sum_probs=20.3
Q ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHH
Q 047359 395 SSFVIVVSRLCHLKELRKAMKNHDEMLK 422 (440)
Q Consensus 395 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 422 (440)
.+++.+...|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4567777788888888888888877664
No 326
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=89.87 E-value=0.96 Score=23.22 Aligned_cols=27 Identities=22% Similarity=0.277 Sum_probs=16.7
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHHcCC
Q 047359 365 VLLDGLFKDGRMEEAVRIFDYMKELKV 391 (440)
Q Consensus 365 ~l~~~~~~~g~~~~a~~~~~~~~~~~~ 391 (440)
.+..++.+.|++++|.+.|+++.+..|
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 345556666667777776666666544
No 327
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=89.84 E-value=11 Score=31.75 Aligned_cols=62 Identities=10% Similarity=0.150 Sum_probs=30.0
Q ss_pred CCHHhHHHHHHHHhhhccHHHHHHHHHHHHHc-CCCCChhhHHHHHHHHHhcCChHHHHHHHH
Q 047359 218 LQDDTCGCMLKALSKEGRVKEAIQIYHLISER-GITVRDSDYYAFVNVLCKEHQPEEVCGLLR 279 (440)
Q Consensus 218 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 279 (440)
++..+...++..++..+++..-.++++..... +...|...|..++......|+..-..++..
T Consensus 200 l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 200 LTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred CChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 34444444555555555555555555444433 333344455555555555555544444443
No 328
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=89.80 E-value=3.9 Score=27.69 Aligned_cols=45 Identities=11% Similarity=0.107 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHH
Q 047359 308 EVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIE 352 (440)
Q Consensus 308 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 352 (440)
++.+-++.+....+-|++....+.+++|-+.+++..|.++++-++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 334444444444444555555555555555555555555554444
No 329
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=89.53 E-value=4.1 Score=27.96 Aligned_cols=42 Identities=10% Similarity=0.055 Sum_probs=17.5
Q ss_pred HHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHH
Q 047359 311 ELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIE 352 (440)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 352 (440)
+-++.+....+-|++.+..+.+++|-+.+++..|.++++-++
T Consensus 31 rglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK 72 (108)
T PF02284_consen 31 RGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIK 72 (108)
T ss_dssp HHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 333333344444444444444444444444444444444443
No 330
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=89.22 E-value=1.2 Score=24.52 Aligned_cols=28 Identities=25% Similarity=0.394 Sum_probs=21.1
Q ss_pred HhHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 047359 361 ATYDVLLDGLFKDGRMEEAVRIFDYMKE 388 (440)
Q Consensus 361 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 388 (440)
.+++.|...|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677788888888888888888887654
No 331
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=89.09 E-value=3.8 Score=27.75 Aligned_cols=46 Identities=11% Similarity=0.071 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 047359 272 EEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVL 317 (440)
Q Consensus 272 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 317 (440)
-++.+-++.+...+..|++....+.+++|.+.+++..|.++++.+.
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3444444555555555666666666666666666666666665554
No 332
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=88.95 E-value=1 Score=25.42 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=12.6
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHH
Q 047359 366 LLDGLFKDGRMEEAVRIFDYMKE 388 (440)
Q Consensus 366 l~~~~~~~g~~~~a~~~~~~~~~ 388 (440)
|..+|...|+.+.|.++++++..
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 44555555555555555555554
No 333
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=88.85 E-value=5.8 Score=27.23 Aligned_cols=44 Identities=7% Similarity=0.059 Sum_probs=20.2
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 047359 274 VCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVL 317 (440)
Q Consensus 274 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 317 (440)
..+-+..+...++.|++....+.+++|.+.+++..|.++++.+.
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK 72 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIK 72 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33444444444445555555555555555555555555555554
No 334
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=88.71 E-value=18 Score=32.55 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=14.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHH
Q 047359 116 NLVIDFYSKKGDFGAAFDRLNEM 138 (440)
Q Consensus 116 ~~li~~~~~~~~~~~a~~~~~~~ 138 (440)
..+|+-|...|+..+..+.++.+
T Consensus 349 ~~IIqEYFlsgDt~Evi~~L~DL 371 (645)
T KOG0403|consen 349 TPIIQEYFLSGDTPEVIRSLRDL 371 (645)
T ss_pred HHHHHHHHhcCChHHHHHHHHHc
Confidence 45566666666666666666654
No 335
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=88.69 E-value=0.78 Score=22.32 Aligned_cols=21 Identities=10% Similarity=0.007 Sum_probs=11.0
Q ss_pred HHHHHHHHhcccHHHHHHHHH
Q 047359 398 VIVVSRLCHLKELRKAMKNHD 418 (440)
Q Consensus 398 ~~l~~~~~~~g~~~~a~~~~~ 418 (440)
..+...+...|++++|..+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 344555555555555555543
No 336
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=88.62 E-value=7.9 Score=30.63 Aligned_cols=67 Identities=12% Similarity=0.064 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhccc--------CCchhHHHHHHHHHhcCChhHH
Q 047359 64 RLASCLYGAMVRDGVSPNKFTWSLVAQILCRSGKFEVVLGLLDSGI--------YSSVMYNLVIDFYSKKGDFGAA 131 (440)
Q Consensus 64 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--------~~~~~~~~li~~~~~~~~~~~a 131 (440)
+.|.+.|-.+...+.--++.....|...|. ..+.+++++++-+.. +|+..+.+|++.+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 456666666655544334444444444444 445566666555443 4556667777777777776665
No 337
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=88.28 E-value=1.2 Score=23.12 Aligned_cols=29 Identities=31% Similarity=0.266 Sum_probs=19.4
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 047359 362 TYDVLLDGLFKDGRMEEAVRIFDYMKELK 390 (440)
Q Consensus 362 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 390 (440)
+|..+...|...|++++|.+.|++..+..
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 45566666777777777777777666543
No 338
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.28 E-value=14 Score=30.74 Aligned_cols=209 Identities=7% Similarity=0.024 Sum_probs=122.4
Q ss_pred CCCCCchhhHHHHHHH-HHhcCChhhHHHHHHHHHhcCCCCc-ccccchHHHHHHHhhcCcHHHHHHHHHHHHhc---CC
Q 047359 142 RNLTPGFSTYSSILDG-ARRYEKTEVSDRIVGLMVEKKLLPK-HFLSGNDYVIQKLSDMGKTYAAEMIFKRACDE---KI 216 (440)
Q Consensus 142 ~~~~p~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~ 216 (440)
.+..||+..-|..-.+ -.+...+++|+.-|++.++...... -...+.-.++....+.+++++....+.++..- .+
T Consensus 20 s~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAV 99 (440)
T KOG1464|consen 20 SNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAV 99 (440)
T ss_pred cCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 4566776544433221 1244578889999998887542222 11223345678888999999998888887531 11
Q ss_pred --CCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHc-----CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC---
Q 047359 217 --ELQDDTCGCMLKALSKEGRVKEAIQIYHLISER-----GITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGY--- 286 (440)
Q Consensus 217 --~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--- 286 (440)
.-+..+.|+++.....+.+.+.-..+|+.-.+. +-...-.|-..+...|...+.+.+..++++++...--
T Consensus 100 TrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~ed 179 (440)
T KOG1464|consen 100 TRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTED 179 (440)
T ss_pred hccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhcccc
Confidence 123446677777777677776666666543321 1122223445677777788888888888887754311
Q ss_pred -CC-------ChhhHHHHHHHHHcCCCHHHHHHHHHHHHhc-CCCCchhhhHHHHHHH-----HcCCcHHHHHHHHHHH
Q 047359 287 -IP-------CAMELSRFVASQCGKGKWKEVEELLSAVLDK-GLLLDSFCCSSLMEYY-----CSNRQIDKAIALHIKI 351 (440)
Q Consensus 287 -~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~-----~~~~~~~~a~~~~~~~ 351 (440)
.. -...|..-+..|....+-.....++++.... ..-|.+.+.. .|+-| .+.|++++|..-|-+.
T Consensus 180 GedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhTDFFEA 257 (440)
T KOG1464|consen 180 GEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHTDFFEA 257 (440)
T ss_pred CchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHhHHHHH
Confidence 11 1235666677777777777777777766532 2234444433 33333 4667777776543333
No 339
>PRK10941 hypothetical protein; Provisional
Probab=88.26 E-value=7.2 Score=32.85 Aligned_cols=75 Identities=15% Similarity=0.120 Sum_probs=55.5
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcccHHHHHHHHHHHHHC-CCCCCHHHHHHHhh
Q 047359 363 YDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLKELRKAMKNHDEMLKM-GHKPDEATYKQVIS 437 (440)
Q Consensus 363 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~t~~~ll~ 437 (440)
.+.+-.+|.+.++++.|.++.+.+....|.++.-+..-...|.+.|.+..|..=++..++. .-.|+.......+.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~ 259 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIH 259 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 3455667888888888888888888888888887887788888888888888888888763 23445555444443
No 340
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=88.05 E-value=29 Score=34.28 Aligned_cols=227 Identities=12% Similarity=-0.033 Sum_probs=119.9
Q ss_pred HhcCChhhHHHHHHHHHhcCCCCccc-----ccchHHH-HHHHhhcCcHHHHHHHHHHHHhc----CCCCCHHhHHHHHH
Q 047359 159 RRYEKTEVSDRIVGLMVEKKLLPKHF-----LSGNDYV-IQKLSDMGKTYAAEMIFKRACDE----KIELQDDTCGCMLK 228 (440)
Q Consensus 159 ~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~ 228 (440)
....++++|..+..++...-..|+.. ...++.+ .......|+++.|.++-+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 34678899999888877653333210 1122222 12334568888888887776553 23345556677777
Q ss_pred HHhhhccHHHHHHHHHHHHHcCCCCChhhHHH---HH--HHHHhcCC--hHHHHHHHHHHHHcCC--C----CChhhHHH
Q 047359 229 ALSKEGRVKEAIQIYHLISERGITVRDSDYYA---FV--NVLCKEHQ--PEEVCGLLRDVVERGY--I----PCAMELSR 295 (440)
Q Consensus 229 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---l~--~~~~~~~~--~~~a~~~~~~~~~~~~--~----~~~~~~~~ 295 (440)
+..-.|++++|..+..+..+..-..+...+.. +. ..+...|+ ..+.+..+........ + +-..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 77788999999988877665422223333322 21 23445663 2333333333322210 1 12234444
Q ss_pred HHHHHHcC-CCHHHHHHHHHHHHhcCCCCchhhhH--HHHHHHHcCCcHHHHHHHHHHHHhccCCcC----HHhHHHHHH
Q 047359 296 FVASQCGK-GKWKEVEELLSAVLDKGLLLDSFCCS--SLMEYYCSNRQIDKAIALHIKIEKLKGSLD----VATYDVLLD 368 (440)
Q Consensus 296 l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~ 368 (440)
++.++.+. +...++..-+.--......|-..... .++..+...|++++|...++++......+. ..+-...+.
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~ 665 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVK 665 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhh
Confidence 55555442 11222222222222222333223232 667788889999999998888876544332 111122222
Q ss_pred --HHHhcCcHHHHHHHHHH
Q 047359 369 --GLFKDGRMEEAVRIFDY 385 (440)
Q Consensus 369 --~~~~~g~~~~a~~~~~~ 385 (440)
.....|+...+.....+
T Consensus 666 ~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 666 LILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHhcccCCHHHHHHHHHh
Confidence 23467888887777665
No 341
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=87.79 E-value=12 Score=29.63 Aligned_cols=72 Identities=10% Similarity=-0.053 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHc---CCCCChhhHHHHHHHHHhcCChHHH
Q 047359 202 YAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISER---GITVRDSDYYAFVNVLCKEHQPEEV 274 (440)
Q Consensus 202 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a 274 (440)
+.|.+.|-.+...+.--++.....+...|. ..+.+++..++....+. +-.+|+..+.+|++.+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 445555555554444334444444443333 45566666666555443 2244556666666666666665555
No 342
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=87.30 E-value=2.9 Score=24.80 Aligned_cols=26 Identities=31% Similarity=0.326 Sum_probs=12.8
Q ss_pred HHHHHhcCcHHHHHHHHHHHHHcCCC
Q 047359 367 LDGLFKDGRMEEAVRIFDYMKELKVV 392 (440)
Q Consensus 367 ~~~~~~~g~~~~a~~~~~~~~~~~~~ 392 (440)
.-++.+.|++++|.+..+.+.+..|.
T Consensus 8 Aig~ykl~~Y~~A~~~~~~lL~~eP~ 33 (53)
T PF14853_consen 8 AIGHYKLGEYEKARRYCDALLEIEPD 33 (53)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 33445555555555555555555444
No 343
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=87.16 E-value=30 Score=33.51 Aligned_cols=47 Identities=17% Similarity=0.272 Sum_probs=29.3
Q ss_pred chhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCchhhHHHHHHHHHhc
Q 047359 112 SVMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDGARRY 161 (440)
Q Consensus 112 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 161 (440)
...| .+|-.|.++|++++|.++..+... ........+...+..+...
T Consensus 112 ~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~--~~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 112 DPIW-ALIYYCLRCGDYDEALEVANENRN--QFQKIERSFPTYLKAYASS 158 (613)
T ss_dssp EEHH-HHHHHHHTTT-HHHHHHHHHHTGG--GS-TTTTHHHHHHHHCTTT
T ss_pred CccH-HHHHHHHhcCCHHHHHHHHHHhhh--hhcchhHHHHHHHHHHHhC
Confidence 3344 456678889999999998866543 2333445566667776654
No 344
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=87.07 E-value=5.3 Score=37.00 Aligned_cols=100 Identities=13% Similarity=0.008 Sum_probs=64.5
Q ss_pred CCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHH
Q 047359 303 KGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRI 382 (440)
Q Consensus 303 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 382 (440)
.|+...|.+.+.......+.-..+....|.....+.|-...|..++.+..... ...+.++..+.+++....+++.|++.
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHH
Confidence 46777777776666544333333444555666666666667777776666554 23556667777777777888888888
Q ss_pred HHHHHHcCCCchhhHHHHHHH
Q 047359 383 FDYMKELKVVSSSSFVIVVSR 403 (440)
Q Consensus 383 ~~~~~~~~~~~~~~~~~l~~~ 403 (440)
|+.+.+..+.++..-+.|...
T Consensus 699 ~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 699 FRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred HHHHHhcCCCChhhHHHHHHH
Confidence 888777777766665555443
No 345
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.72 E-value=14 Score=29.12 Aligned_cols=54 Identities=17% Similarity=0.113 Sum_probs=22.6
Q ss_pred HHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHc
Q 047359 334 YYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKEL 389 (440)
Q Consensus 334 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 389 (440)
.....|.+++|+..++.....+.. ......-.+.+...|+-++|+.-|++..+.
T Consensus 135 vq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 135 VQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred HHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 344445555555554444332211 111222233444445555555555444444
No 346
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=86.46 E-value=27 Score=32.17 Aligned_cols=178 Identities=11% Similarity=0.023 Sum_probs=125.1
Q ss_pred ccchHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 047359 185 LSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNV 264 (440)
Q Consensus 185 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 264 (440)
.....+++..+.....+.-.+.+..+|..-|- +-..|..++++|... ..+.-..+++++.+..+. |...-..+...
T Consensus 66 d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e--~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~ 141 (711)
T COG1747 66 DSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE--SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADK 141 (711)
T ss_pred chHHHHHHHHhccchHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHH
Confidence 45667788999999999999999999988643 566788899999888 667788899988887654 44444555555
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCC-----ChhhHHHHHHHHHcCCCHHHHHHHHHHHHh-cCCCCchhhhHHHHHHHHcC
Q 047359 265 LCKEHQPEEVCGLLRDVVERGYIP-----CAMELSRFVASQCGKGKWKEVEELLSAVLD-KGLLLDSFCCSSLMEYYCSN 338 (440)
Q Consensus 265 ~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~ 338 (440)
|.+ ++...+...|..+...-++. -...|..+...- ..+.+....+..++.. .|...-...+..+-.-|...
T Consensus 142 yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~ 218 (711)
T COG1747 142 YEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSEN 218 (711)
T ss_pred HHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccc
Confidence 554 88888999998887653321 112455544321 3567777777777754 34444555666666788889
Q ss_pred CcHHHHHHHHHHHHhccCCcCHHhHHHHHHHH
Q 047359 339 RQIDKAIALHIKIEKLKGSLDVATYDVLLDGL 370 (440)
Q Consensus 339 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 370 (440)
.++.+|++++..+.+..-+ |...-..++.-+
T Consensus 219 eN~~eai~Ilk~il~~d~k-~~~ar~~~i~~l 249 (711)
T COG1747 219 ENWTEAIRILKHILEHDEK-DVWARKEIIENL 249 (711)
T ss_pred cCHHHHHHHHHHHhhhcch-hhhHHHHHHHHH
Confidence 9999999999988886544 555555555443
No 347
>PRK09687 putative lyase; Provisional
Probab=86.14 E-value=20 Score=30.54 Aligned_cols=200 Identities=9% Similarity=-0.052 Sum_probs=103.3
Q ss_pred CHHhHHHHHHHHhhhccH----HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh-----HHHHHHHHHHHHcCCCCC
Q 047359 219 QDDTCGCMLKALSKEGRV----KEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQP-----EEVCGLLRDVVERGYIPC 289 (440)
Q Consensus 219 ~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~~~ 289 (440)
|...-...+.++.+.|+. .++...+..+.... ++...-...+.++...+.. ..+...+..... .++
T Consensus 67 d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D--~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~ 141 (280)
T PRK09687 67 NPIERDIGADILSQLGMAKRCQDNVFNILNNLALED--KSACVRASAINATGHRCKKNPLYSPKIVEQSQITAF---DKS 141 (280)
T ss_pred CHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcC--CCHHHHHHHHHHHhcccccccccchHHHHHHHHHhh---CCC
Confidence 444444445555555542 34555555553322 3444444444444443321 122233322222 234
Q ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCC-cHHHHHHHHHHHHhccCCcCHHhHHHHHH
Q 047359 290 AMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNR-QIDKAIALHIKIEKLKGSLDVATYDVLLD 368 (440)
Q Consensus 290 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 368 (440)
..+-...+.++.+.++ +.+...+-.+.+. ++...-...+.++.+.+ +.+.+...+..+.. .++..+-...+.
T Consensus 142 ~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~ 214 (280)
T PRK09687 142 TNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAII 214 (280)
T ss_pred HHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHH
Confidence 4444555666666665 4455555555542 34445455555555543 23455555555553 346666667777
Q ss_pred HHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcccHHHHHHHHHHHHHCCCCCCHHHHHHHhhh
Q 047359 369 GLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDEATYKQVISG 438 (440)
Q Consensus 369 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~a 438 (440)
++.+.|+. .|...+-+..+.+. .....+.++...|.. +|+..+.++.+. .||..+-...+.+
T Consensus 215 aLg~~~~~-~av~~Li~~L~~~~----~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a 276 (280)
T PRK09687 215 GLALRKDK-RVLSVLIKELKKGT----VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDK 276 (280)
T ss_pred HHHccCCh-hHHHHHHHHHcCCc----hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHH
Confidence 77777773 45555555544321 344677777777774 677777777763 3566655555444
No 348
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=86.05 E-value=44 Score=34.33 Aligned_cols=81 Identities=19% Similarity=0.215 Sum_probs=47.2
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhcCCCCchh--hhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcC
Q 047359 297 VASQCGKGKWKEVEELLSAVLDKGLLLDSF--CCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDG 374 (440)
Q Consensus 297 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 374 (440)
+.+|..+|+|.+|+.+..++... -+.. +-..|+.-+...++.-+|-++..+.... | .-.+..+++..
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~-----~~av~ll~ka~ 1040 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD---P-----EEAVALLCKAK 1040 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---H-----HHHHHHHhhHh
Confidence 44555566666666665555321 1211 2245666677778888887777666542 1 22344566677
Q ss_pred cHHHHHHHHHHHHH
Q 047359 375 RMEEAVRIFDYMKE 388 (440)
Q Consensus 375 ~~~~a~~~~~~~~~ 388 (440)
.+++|.++.....+
T Consensus 1041 ~~~eAlrva~~~~~ 1054 (1265)
T KOG1920|consen 1041 EWEEALRVASKAKR 1054 (1265)
T ss_pred HHHHHHHHHHhccc
Confidence 78888877665543
No 349
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=86.01 E-value=10 Score=30.92 Aligned_cols=85 Identities=6% Similarity=-0.057 Sum_probs=51.3
Q ss_pred HHcCCCHHHHHHHHHHHHhcCCCCchh-hhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHH-hHHHHHHHHHhcCcHH
Q 047359 300 QCGKGKWKEVEELLSAVLDKGLLLDSF-CCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVA-TYDVLLDGLFKDGRME 377 (440)
Q Consensus 300 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~ 377 (440)
|.....++.|..-|.+.... .|+.. -|+.-+..+.+..+++.+.+--.+.++ +.||.. ...-+.........++
T Consensus 20 ~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhcccc
Confidence 44456677777766666554 34443 344455566667777777776666665 344543 3334455566667777
Q ss_pred HHHHHHHHHHH
Q 047359 378 EAVRIFDYMKE 388 (440)
Q Consensus 378 ~a~~~~~~~~~ 388 (440)
+|+..+.+..+
T Consensus 96 eaI~~Lqra~s 106 (284)
T KOG4642|consen 96 EAIKVLQRAYS 106 (284)
T ss_pred HHHHHHHHHHH
Confidence 88877777643
No 350
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=85.52 E-value=21 Score=30.16 Aligned_cols=137 Identities=9% Similarity=0.024 Sum_probs=74.6
Q ss_pred ChhHHHHHHHHHhcCCCCCCchhhHHHHHHHHHh-cC-ChhhHHHHHHHHHhc-CCCCcccccchHHHHHHHhhcCcHHH
Q 047359 127 DFGAAFDRLNEMCNGRNLTPGFSTYSSILDGARR-YE-KTEVSDRIVGLMVEK-KLLPKHFLSGNDYVIQKLSDMGKTYA 203 (440)
Q Consensus 127 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~~-~~~~a~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ 203 (440)
.+.+|+++|+.......+--|..+...+++.... .+ ....-.++.+.+... +-.++ ..+...++..+++.+++.+
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~--~~vi~~Il~~L~~~~dW~k 220 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLT--RNVIISILEILAESRDWNK 220 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCC--hhHHHHHHHHHHhcccHHH
Confidence 3455556655332111233455555555555444 11 222222333333322 23344 5566667777777777777
Q ss_pred HHHHHHHHHhc-CCCCCHHhHHHHHHHHhhhccHHHHHHHHHH-----HHHcCCCCChhhHHHHHHHH
Q 047359 204 AEMIFKRACDE-KIELQDDTCGCMLKALSKEGRVKEAIQIYHL-----ISERGITVRDSDYYAFVNVL 265 (440)
Q Consensus 204 a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-----~~~~~~~~~~~~~~~l~~~~ 265 (440)
-.++++..... ++..|...|...|+...+.|+..-..++.++ +.+.++..+...-.++-..+
T Consensus 221 l~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF 288 (292)
T PF13929_consen 221 LFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELF 288 (292)
T ss_pred HHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHH
Confidence 77777766554 5566777777777777777777766666554 23445555555444444433
No 351
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=85.38 E-value=9.7 Score=30.52 Aligned_cols=77 Identities=14% Similarity=0.136 Sum_probs=57.8
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccC--CcCHHhHHHHHHH
Q 047359 292 ELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKG--SLDVATYDVLLDG 369 (440)
Q Consensus 292 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~p~~~~~~~l~~~ 369 (440)
|.+..+..+.+.+.+.+++...+.-.+..+. |..+-..+++.++-.|++++|..-++-.-.... .+-..+|..++.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 4455666777889999999999888877554 677788899999999999999988777665322 2344566666654
No 352
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=85.10 E-value=14 Score=27.62 Aligned_cols=50 Identities=14% Similarity=0.180 Sum_probs=36.3
Q ss_pred CchhHHHHHHHHHhcCC-hhHHHHHHHHHhcCCCCCCchhhHHHHHHHHHhc
Q 047359 111 SSVMYNLVIDFYSKKGD-FGAAFDRLNEMCNGRNLTPGFSTYSSILDGARRY 161 (440)
Q Consensus 111 ~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 161 (440)
+...|..++.+..+... ---+..+|+.+++ .+.+++..-|..++.++.+.
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~-~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKK-NDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHcC
Confidence 44567777777765555 3456778888877 77788888888888887654
No 353
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=84.96 E-value=2.3 Score=21.05 Aligned_cols=27 Identities=11% Similarity=0.185 Sum_probs=17.5
Q ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHH
Q 047359 396 SFVIVVSRLCHLKELRKAMKNHDEMLK 422 (440)
Q Consensus 396 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 422 (440)
++..+...+...|++++|...+++.++
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 455566666667777777777766654
No 354
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=84.77 E-value=2.7 Score=23.75 Aligned_cols=24 Identities=17% Similarity=0.140 Sum_probs=14.4
Q ss_pred HHHHHHcCCcHHHHHHHHHHHHhc
Q 047359 331 LMEYYCSNRQIDKAIALHIKIEKL 354 (440)
Q Consensus 331 l~~~~~~~~~~~~a~~~~~~~~~~ 354 (440)
+..+|...|+.+.|.++++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 455566666666666666666543
No 355
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=84.70 E-value=13 Score=27.17 Aligned_cols=45 Identities=18% Similarity=0.266 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHc-CCC-chhhHHHHHHHHHhcccHHHHHHHHHHHHH
Q 047359 378 EAVRIFDYMKEL-KVV-SSSSFVIVVSRLCHLKELRKAMKNHDEMLK 422 (440)
Q Consensus 378 ~a~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 422 (440)
+.+.+++++.+. .+. .......|.-++.+.|++++++++.+.+++
T Consensus 53 ~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 53 EGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred HhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 344444444432 222 333334444444455555555555554444
No 356
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=84.62 E-value=8.3 Score=33.14 Aligned_cols=93 Identities=13% Similarity=-0.091 Sum_probs=62.5
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHH
Q 047359 263 NVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQID 342 (440)
Q Consensus 263 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 342 (440)
+.|.+.|.+++|+..+....... +-+.+++..-..+|.+...+..|+.-.......+-. -...|+.-+.+-...|...
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~-Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL-YVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH-HHHHHHHHHHHHHHHhhHH
Confidence 46889999999999999887653 238888888888999999999888777666554211 2223333333444455566
Q ss_pred HHHHHHHHHHhccCCcC
Q 047359 343 KAIALHIKIEKLKGSLD 359 (440)
Q Consensus 343 ~a~~~~~~~~~~~~~p~ 359 (440)
+|.+-++...+ +.|+
T Consensus 183 EAKkD~E~vL~--LEP~ 197 (536)
T KOG4648|consen 183 EAKKDCETVLA--LEPK 197 (536)
T ss_pred HHHHhHHHHHh--hCcc
Confidence 66666666665 3444
No 357
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=83.68 E-value=17 Score=28.20 Aligned_cols=45 Identities=16% Similarity=0.149 Sum_probs=28.9
Q ss_pred hhHHHHHHHHHhcCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC
Q 047359 128 FGAAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLP 181 (440)
Q Consensus 128 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 181 (440)
+++|.+.|+.... ..|+...|+.-+... ++|-+++.++.+.+..+
T Consensus 96 F~kA~~~FqkAv~---~~P~ne~Y~ksLe~~------~kap~lh~e~~~~~~~~ 140 (186)
T PF06552_consen 96 FEKATEYFQKAVD---EDPNNELYRKSLEMA------AKAPELHMEIHKQGLGQ 140 (186)
T ss_dssp HHHHHHHHHHHHH---H-TT-HHHHHHHHHH------HTHHHHHHHHHHSSS--
T ss_pred HHHHHHHHHHHHh---cCCCcHHHHHHHHHH------HhhHHHHHHHHHHHhhh
Confidence 4566777777755 778888888877765 35677777777765433
No 358
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=83.64 E-value=8.8 Score=26.29 Aligned_cols=49 Identities=12% Similarity=0.268 Sum_probs=21.9
Q ss_pred HHhcCChhHHHHHHHHHhcCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 047359 122 YSKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEK 177 (440)
Q Consensus 122 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 177 (440)
+...|++++|..+.+.+ ..||...|.+|.. .+.|..+....-+..+...
T Consensus 49 LmNrG~Yq~Al~l~~~~-----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 49 LMNRGDYQSALQLGNKL-----CYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHccchHHHHHHhcCCC-----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 34445555555544443 2355555544432 2444444444444444433
No 359
>PRK09687 putative lyase; Provisional
Probab=83.08 E-value=28 Score=29.68 Aligned_cols=79 Identities=14% Similarity=0.109 Sum_probs=33.9
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHhccc-CCchhHHHHHHHHHhcCCh----hHHHHHHHHHhcCCCCCCchhhHHHH
Q 047359 80 PNKFTWSLVAQILCRSGKFEVVLGLLDSGI-YSSVMYNLVIDFYSKKGDF----GAAFDRLNEMCNGRNLTPGFSTYSSI 154 (440)
Q Consensus 80 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~li~~~~~~~~~----~~a~~~~~~~~~~~~~~p~~~~~~~l 154 (440)
+|.......+..+...|..+....+..-.. ++...-...+.++.+.|+. +++...+..+.. -.|+...-...
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~---~D~d~~VR~~A 111 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLAL---EDKSACVRASA 111 (280)
T ss_pred CCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHh---cCCCHHHHHHH
Confidence 344444444455554443222222222111 4444444555555555543 345555555422 22444444444
Q ss_pred HHHHHhc
Q 047359 155 LDGARRY 161 (440)
Q Consensus 155 ~~~~~~~ 161 (440)
+.++...
T Consensus 112 ~~aLG~~ 118 (280)
T PRK09687 112 INATGHR 118 (280)
T ss_pred HHHHhcc
Confidence 4444443
No 360
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=82.54 E-value=25 Score=29.49 Aligned_cols=87 Identities=11% Similarity=0.011 Sum_probs=46.7
Q ss_pred HHHHhhcCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH-----
Q 047359 192 IQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLC----- 266 (440)
Q Consensus 192 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----- 266 (440)
|.+++..+++.++....-+--+.--+..+.+...-|-.|.+.+.+..+.++-....+..-.-+...|..++..|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 556666666666554433332221122334555556667777777777776666655422223334555555443
Q ss_pred hcCChHHHHHHH
Q 047359 267 KEHQPEEVCGLL 278 (440)
Q Consensus 267 ~~~~~~~a~~~~ 278 (440)
-.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 356677776665
No 361
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=82.45 E-value=22 Score=29.86 Aligned_cols=89 Identities=13% Similarity=0.082 Sum_probs=63.0
Q ss_pred HHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHc--
Q 047359 225 CMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCG-- 302 (440)
Q Consensus 225 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 302 (440)
.=|++++..+++.+++...-+--+.--+........-|-.|.+.+.+..+.++-..-....-.-+...|..++..|..
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 347889999999998876655544322233455666677789999999999888887764323334457777776655
Q ss_pred ---CCCHHHHHHHH
Q 047359 303 ---KGKWKEVEELL 313 (440)
Q Consensus 303 ---~~~~~~a~~~~ 313 (440)
.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 59999998887
No 362
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=82.03 E-value=6.2 Score=22.81 Aligned_cols=34 Identities=6% Similarity=0.075 Sum_probs=23.5
Q ss_pred HHhcccHHHHHHHHHHHHHCCCCCCHHHHHHHhh
Q 047359 404 LCHLKELRKAMKNHDEMLKMGHKPDEATYKQVIS 437 (440)
Q Consensus 404 ~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~ 437 (440)
..+.|-..++..++++|.+.|+.-+...+..+++
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3456666677777777777777777777766664
No 363
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=81.61 E-value=7.2 Score=25.32 Aligned_cols=45 Identities=11% Similarity=0.102 Sum_probs=18.9
Q ss_pred cCCcHHHHHHHHHHHHhccCCcCH--HhHHHHHHHHHhcCcHHHHHH
Q 047359 337 SNRQIDKAIALHIKIEKLKGSLDV--ATYDVLLDGLFKDGRMEEAVR 381 (440)
Q Consensus 337 ~~~~~~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~ 381 (440)
..++.++|+..|+...+.-..|.. .++..++.+|+..|++.++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555554443222111 133344444444444444443
No 364
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.57 E-value=24 Score=27.84 Aligned_cols=90 Identities=14% Similarity=0.049 Sum_probs=67.8
Q ss_pred HHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhH-----HHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHH
Q 047359 331 LMEYYCSNRQIDKAIALHIKIEKLKGSLDVATY-----DVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLC 405 (440)
Q Consensus 331 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~-----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 405 (440)
+...+...+++++|..-++..... |....+ -.|.+.....|.+++|...++.....+. .......-.+.+.
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w-~~~~~elrGDill 170 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW-AAIVAELRGDILL 170 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH-HHHHHHHhhhHHH
Confidence 345678899999999999888754 222233 3455677889999999999988776532 2233455677899
Q ss_pred hcccHHHHHHHHHHHHHCC
Q 047359 406 HLKELRKAMKNHDEMLKMG 424 (440)
Q Consensus 406 ~~g~~~~a~~~~~~m~~~~ 424 (440)
..|+-++|..-|++.++.+
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 171 AKGDKQEARAAYEKALESD 189 (207)
T ss_pred HcCchHHHHHHHHHHHHcc
Confidence 9999999999999999875
No 365
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.20 E-value=64 Score=32.48 Aligned_cols=59 Identities=14% Similarity=0.221 Sum_probs=35.4
Q ss_pred HHHHHHHHHccCCcchHHHHHHHHHhcCCccChHh---HHHHHH---HHHhccchhHHHHHHHHHHH
Q 047359 15 LSLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSA---CNALLD---ALYRQNEIRLASCLYGAMVR 75 (440)
Q Consensus 15 ~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~ll~---~~~~~~~~~~a~~~~~~~~~ 75 (440)
+..=+..+....++++|..+-+.....+ |...- +..... -+..+|++++|.+.|+++..
T Consensus 310 ~~~qi~~lL~~k~fe~ai~L~e~~~~~~--p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~~~ 374 (877)
T KOG2063|consen 310 FEKQIQDLLQEKSFEEAISLAEILDSPN--PKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKSEI 374 (877)
T ss_pred hHHHHHHHHHhhhHHHHHHHHhccCCCC--hHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcc
Confidence 5556667777777888887776655422 22111 111222 24467888888888888754
No 366
>PHA02875 ankyrin repeat protein; Provisional
Probab=81.01 E-value=44 Score=30.48 Aligned_cols=214 Identities=15% Similarity=0.159 Sum_probs=104.8
Q ss_pred HHHhcCChhHHHHHHHHHhcCCCCCCchhh--HHHHHHHHHhcCChhhHHHHHHHHHhcCCCCcccccchHHHHHHHhhc
Q 047359 121 FYSKKGDFGAAFDRLNEMCNGRNLTPGFST--YSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDM 198 (440)
Q Consensus 121 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 198 (440)
..++.|+.+-+..++ + .|..|+... ..+.+..++..|+. ++.+.+.+.|..|+.........+...+..
T Consensus 8 ~A~~~g~~~iv~~Ll----~-~g~~~n~~~~~g~tpL~~A~~~~~~----~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~ 78 (413)
T PHA02875 8 DAILFGELDIARRLL----D-IGINPNFEIYDGISPIKLAMKFRDS----EAIKLLMKHGAIPDVKYPDIESELHDAVEE 78 (413)
T ss_pred HHHHhCCHHHHHHHH----H-CCCCCCccCCCCCCHHHHHHHcCCH----HHHHHHHhCCCCccccCCCcccHHHHHHHC
Confidence 345567765544443 4 566665432 23344444555654 477777788766652111223356666778
Q ss_pred CcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhh--HHHHHHHHHhcCChHHHHH
Q 047359 199 GKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSD--YYAFVNVLCKEHQPEEVCG 276 (440)
Q Consensus 199 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~ 276 (440)
|+.+.+..+++.-.......+..- .+.+...+..|+.+ +++.+.+.|..|+... -.+.+...+..|+.+-+..
T Consensus 79 g~~~~v~~Ll~~~~~~~~~~~~~g-~tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~ 153 (413)
T PHA02875 79 GDVKAVEELLDLGKFADDVFYKDG-MTPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIEL 153 (413)
T ss_pred CCHHHHHHHHHcCCcccccccCCC-CCHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence 888776666643221111111111 22334444556654 4455555665554321 1223444456677654444
Q ss_pred HHHHHHHcCCCCC---hhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhh---hHHHHHHHHcCCcHHHHHHHHHH
Q 047359 277 LLRDVVERGYIPC---AMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFC---CSSLMEYYCSNRQIDKAIALHIK 350 (440)
Q Consensus 277 ~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~ 350 (440)
+ .+.|..++ ..-.+.+. ..+..|+.+- .+.+.+.|..++... ....+...+..|+.+ +.+.
T Consensus 154 L----l~~g~~~~~~d~~g~TpL~-~A~~~g~~ei----v~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~ 220 (413)
T PHA02875 154 L----IDHKACLDIEDCCGCTPLI-IAMAKGDIAI----CKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRL 220 (413)
T ss_pred H----HhcCCCCCCCCCCCCCHHH-HHHHcCCHHH----HHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHH
Confidence 3 34443332 22233333 3344566554 344556666655432 124444445566654 4455
Q ss_pred HHhccCCcCHH
Q 047359 351 IEKLKGSLDVA 361 (440)
Q Consensus 351 ~~~~~~~p~~~ 361 (440)
+.+.|..++..
T Consensus 221 Ll~~gad~n~~ 231 (413)
T PHA02875 221 FIKRGADCNIM 231 (413)
T ss_pred HHHCCcCcchH
Confidence 56677777653
No 367
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=78.95 E-value=16 Score=25.71 Aligned_cols=27 Identities=26% Similarity=0.538 Sum_probs=21.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhc
Q 047359 114 MYNLVIDFYSKKGDFGAAFDRLNEMCN 140 (440)
Q Consensus 114 ~~~~li~~~~~~~~~~~a~~~~~~~~~ 140 (440)
-|..|+..|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 377788888888888888888888765
No 368
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=78.93 E-value=25 Score=26.32 Aligned_cols=81 Identities=12% Similarity=0.239 Sum_probs=47.1
Q ss_pred hHHHHHHHhhcCcHHHHHHHHHHHHhcCC-----CCCHHhHHHHHHHHhhhcc-HHHHHHHHHHHHHcCCCCChhhHHHH
Q 047359 188 NDYVIQKLSDMGKTYAAEMIFKRACDEKI-----ELQDDTCGCMLKALSKEGR-VKEAIQIYHLISERGITVRDSDYYAF 261 (440)
Q Consensus 188 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l 261 (440)
.+.++......++......+++.+..... ..+...|..++.+..+... ---+..+|..+.+.+..++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 34444555555555555555555422110 1244567777777765555 44556677777776667777777777
Q ss_pred HHHHHhc
Q 047359 262 VNVLCKE 268 (440)
Q Consensus 262 ~~~~~~~ 268 (440)
+.++.+-
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 7776554
No 369
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=78.63 E-value=1.6 Score=37.27 Aligned_cols=89 Identities=12% Similarity=0.046 Sum_probs=53.7
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHH
Q 047359 302 GKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVR 381 (440)
Q Consensus 302 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 381 (440)
..|.++.|++.+...+...+ +....|..-.+++.+.++...|++-+....+.+.. +..-|-.-..+....|++++|..
T Consensus 126 n~G~~~~ai~~~t~ai~lnp-~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D-sa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNP-PLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPD-SAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred cCcchhhhhcccccccccCC-chhhhcccccceeeeccCCchhhhhhhhhhccCcc-cccccchhhHHHHHhhchHHHHH
Confidence 45677777777776666543 24455555556667777777777777666664222 12233333344455677777777
Q ss_pred HHHHHHHcCCC
Q 047359 382 IFDYMKELKVV 392 (440)
Q Consensus 382 ~~~~~~~~~~~ 392 (440)
.|....+.+..
T Consensus 204 dl~~a~kld~d 214 (377)
T KOG1308|consen 204 DLALACKLDYD 214 (377)
T ss_pred HHHHHHhcccc
Confidence 77777776655
No 370
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=77.65 E-value=7.3 Score=19.55 Aligned_cols=27 Identities=19% Similarity=0.160 Sum_probs=12.9
Q ss_pred cHHHHHHHHHHHHHcCCCchhhHHHHH
Q 047359 375 RMEEAVRIFDYMKELKVVSSSSFVIVV 401 (440)
Q Consensus 375 ~~~~a~~~~~~~~~~~~~~~~~~~~l~ 401 (440)
+.+.|..+|+++....+.++..|...+
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 344555555555544444444444433
No 371
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=76.21 E-value=48 Score=28.28 Aligned_cols=19 Identities=16% Similarity=0.315 Sum_probs=13.3
Q ss_pred hHHHHHHHHhhhccHHHHH
Q 047359 222 TCGCMLKALSKEGRVKEAI 240 (440)
Q Consensus 222 ~~~~l~~~~~~~~~~~~a~ 240 (440)
+|..++.+++..|+.+..+
T Consensus 323 ~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 323 QYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred hhhHHHHHHhcCChHHHHH
Confidence 5667777777777776544
No 372
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=76.19 E-value=49 Score=28.35 Aligned_cols=84 Identities=7% Similarity=0.023 Sum_probs=39.3
Q ss_pred hcCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhh----hccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----c
Q 047359 197 DMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSK----EGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCK----E 268 (440)
Q Consensus 197 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 268 (440)
..+++..+...+......+.. .....+...|.. ..+...|.++|....+.|..+ ....+...+.. .
T Consensus 53 ~~~~~~~a~~~~~~a~~~~~~---~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~~---a~~~lg~~~~~G~gv~ 126 (292)
T COG0790 53 YPPDYAKALKSYEKAAELGDA---AALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLAE---ALFNLGLMYANGRGVP 126 (292)
T ss_pred ccccHHHHHHHHHHhhhcCCh---HHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccHH---HHHhHHHHHhcCCCcc
Confidence 446666676666666553221 222223333322 334556666666555554321 22223333322 2
Q ss_pred CChHHHHHHHHHHHHcCC
Q 047359 269 HQPEEVCGLLRDVVERGY 286 (440)
Q Consensus 269 ~~~~~a~~~~~~~~~~~~ 286 (440)
.+..+|..+++...+.|.
T Consensus 127 ~d~~~A~~~~~~Aa~~g~ 144 (292)
T COG0790 127 LDLVKALKYYEKAAKLGN 144 (292)
T ss_pred cCHHHHHHHHHHHHHcCC
Confidence 255555555555555543
No 373
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=75.53 E-value=14 Score=22.75 Aligned_cols=26 Identities=23% Similarity=0.250 Sum_probs=14.3
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHH
Q 047359 397 FVIVVSRLCHLKELRKAMKNHDEMLK 422 (440)
Q Consensus 397 ~~~l~~~~~~~g~~~~a~~~~~~m~~ 422 (440)
.-.++.+|...|++++|.++++++.+
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33455566666666666666655543
No 374
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=74.87 E-value=20 Score=30.87 Aligned_cols=87 Identities=16% Similarity=0.139 Sum_probs=48.8
Q ss_pred HHHHcCCcHHHHHHHHHHHHhccC---CcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhccc
Q 047359 333 EYYCSNRQIDKAIALHIKIEKLKG---SLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLKE 409 (440)
Q Consensus 333 ~~~~~~~~~~~a~~~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 409 (440)
.-|.+..++..|...|.+.++... ..+...|+.-..+-.-.|++..|+.=.......+|....+|..-..++....+
T Consensus 89 N~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~ 168 (390)
T KOG0551|consen 89 NEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELER 168 (390)
T ss_pred HHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHH
Confidence 345556666666666666654432 22334555545555555666666666666666666655555555556665555
Q ss_pred HHHHHHHHHH
Q 047359 410 LRKAMKNHDE 419 (440)
Q Consensus 410 ~~~a~~~~~~ 419 (440)
.++|....++
T Consensus 169 ~~~a~nw~ee 178 (390)
T KOG0551|consen 169 FAEAVNWCEE 178 (390)
T ss_pred HHHHHHHHhh
Confidence 5555544443
No 375
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=74.77 E-value=16 Score=34.17 Aligned_cols=88 Identities=16% Similarity=0.098 Sum_probs=70.3
Q ss_pred HcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcccHHHHHH
Q 047359 336 CSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLKELRKAMK 415 (440)
Q Consensus 336 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 415 (440)
-..|+...|...+.......+.-..+....|.....+.|-...|..++.+........+-++..+.+++.-..++++|++
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHH
Confidence 35688999999888776543333444556677777888888899999988887775588889999999999999999999
Q ss_pred HHHHHHHC
Q 047359 416 NHDEMLKM 423 (440)
Q Consensus 416 ~~~~m~~~ 423 (440)
.|++..+.
T Consensus 698 ~~~~a~~~ 705 (886)
T KOG4507|consen 698 AFRQALKL 705 (886)
T ss_pred HHHHHHhc
Confidence 99998873
No 376
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=74.59 E-value=27 Score=25.22 Aligned_cols=38 Identities=16% Similarity=0.157 Sum_probs=18.7
Q ss_pred HHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 047359 351 IEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKE 388 (440)
Q Consensus 351 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 388 (440)
+..-.+.|++.....-+.+|.+.+|+..|.++|+-++.
T Consensus 75 l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 75 LFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred hhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 33334445555555555555555555555555554443
No 377
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=74.50 E-value=23 Score=24.12 Aligned_cols=19 Identities=21% Similarity=0.209 Sum_probs=8.7
Q ss_pred HHhcCcHHHHHHHHHHHHH
Q 047359 370 LFKDGRMEEAVRIFDYMKE 388 (440)
Q Consensus 370 ~~~~g~~~~a~~~~~~~~~ 388 (440)
....|+.++|.+.+++..+
T Consensus 51 ~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 51 HRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHhCCHHHHHHHHHHHHH
Confidence 3344444444444444444
No 378
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=73.93 E-value=6.5 Score=25.52 Aligned_cols=44 Identities=18% Similarity=0.301 Sum_probs=18.8
Q ss_pred cCcHHHHHHHHHHHHhcCCCCCH--HhHHHHHHHHhhhccHHHHHH
Q 047359 198 MGKTYAAEMIFKRACDEKIELQD--DTCGCMLKALSKEGRVKEAIQ 241 (440)
Q Consensus 198 ~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~ 241 (440)
.++.++|+..|....+.-..+.. .++..++.+|+..|++.++++
T Consensus 19 ~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 19 QNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred cchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444433222111 133444555555555555444
No 379
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=73.78 E-value=25 Score=23.77 Aligned_cols=53 Identities=17% Similarity=0.087 Sum_probs=36.6
Q ss_pred CHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCC--chhhHHHHHHHHHhcccHH
Q 047359 359 DVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVV--SSSSFVIVVSRLCHLKELR 411 (440)
Q Consensus 359 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~ 411 (440)
|...-..+...+...|++++|++.+-.+.+.++. +...-..++..+.-.|.-+
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 5667777888899999999999998888877655 5566666777666666533
No 380
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.53 E-value=26 Score=23.95 Aligned_cols=52 Identities=4% Similarity=0.024 Sum_probs=27.1
Q ss_pred HHHHHHHHHHcCCC-chhhHHHHHHHHHhcccHHHHHHHHHHHHHCCCCCCHHHH
Q 047359 379 AVRIFDYMKELKVV-SSSSFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDEATY 432 (440)
Q Consensus 379 a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~ 432 (440)
..+.++++...+.. +|.....|...|.+.|+.+.|.+-|+.=.. +-|...+|
T Consensus 56 le~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKa--lFPES~~f 108 (121)
T COG4259 56 LEKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKA--LFPESGVF 108 (121)
T ss_pred HHHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhh--hCccchhH
Confidence 33445555544444 555555555556666666666555554333 34444444
No 381
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=73.00 E-value=5.1 Score=29.14 Aligned_cols=19 Identities=21% Similarity=0.370 Sum_probs=9.3
Q ss_pred hhHHHHHHHHHHHcCCCCC
Q 047359 63 IRLASCLYGAMVRDGVSPN 81 (440)
Q Consensus 63 ~~~a~~~~~~~~~~~~~~~ 81 (440)
-..|-.+|+.|++.|-+||
T Consensus 111 k~DaY~VF~kML~~G~pPd 129 (140)
T PF11663_consen 111 KTDAYAVFRKMLERGNPPD 129 (140)
T ss_pred CCcHHHHHHHHHhCCCCCc
Confidence 3344555555555554444
No 382
>PRK09857 putative transposase; Provisional
Probab=72.90 E-value=47 Score=28.59 Aligned_cols=64 Identities=20% Similarity=0.186 Sum_probs=38.0
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcccHHHHHHHHHHHHHCCCCCC
Q 047359 365 VLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPD 428 (440)
Q Consensus 365 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~ 428 (440)
.++.-..+.++.++..++++.+.+..+......-+++.-+.+.|.-++++++.++|...|+.++
T Consensus 211 ~ll~Yi~~~~~~~~~~~~~~~l~~~~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 211 GLFNYILQTGDAVRFNDFIDGVAERSPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHhhccccchHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 3444334556655566666666555333333344566666666666777777888877776655
No 383
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=72.89 E-value=65 Score=28.22 Aligned_cols=97 Identities=7% Similarity=0.001 Sum_probs=47.4
Q ss_pred ChhhHHHHHHHHHhcCC------------hHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCC
Q 047359 254 RDSDYYAFVNVLCKEHQ------------PEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGL 321 (440)
Q Consensus 254 ~~~~~~~l~~~~~~~~~------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 321 (440)
|..+|-.++..--..-. .+.-+.+++++++.+ +.+......++..+.+..+.++..+-++++....+
T Consensus 18 di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~ 96 (321)
T PF08424_consen 18 DIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNP 96 (321)
T ss_pred cHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCC
Confidence 56677666654322111 233445555555552 23444455555555555555666666666655433
Q ss_pred CCchhhhHHHHHHHHc---CCcHHHHHHHHHHHH
Q 047359 322 LLDSFCCSSLMEYYCS---NRQIDKAIALHIKIE 352 (440)
Q Consensus 322 ~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~ 352 (440)
. +...|...+..... .-.++....+|.+..
T Consensus 97 ~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l 129 (321)
T PF08424_consen 97 G-SPELWREYLDFRQSNFASFTVSDVRDVYEKCL 129 (321)
T ss_pred C-ChHHHHHHHHHHHHHhccCcHHHHHHHHHHHH
Confidence 2 44455555543332 223445555544444
No 384
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=71.74 E-value=32 Score=24.87 Aligned_cols=45 Identities=13% Similarity=0.136 Sum_probs=28.2
Q ss_pred HHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHh
Q 047359 309 VEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEK 353 (440)
Q Consensus 309 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 353 (440)
..+-++.....++-|++......+++|-+.+|+..|.++|+-++.
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 334445555556666666666666777777777777776666554
No 385
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=70.76 E-value=84 Score=28.58 Aligned_cols=58 Identities=19% Similarity=0.164 Sum_probs=41.4
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHcCCC---chhhHHHHHHHHHhcccHHHHHHHHHHHHHCC
Q 047359 364 DVLLDGLFKDGRMEEAVRIFDYMKELKVV---SSSSFVIVVSRLCHLKELRKAMKNHDEMLKMG 424 (440)
Q Consensus 364 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 424 (440)
..|+.-|...|+..+|.+.+++ .|.+ ...++.+++.+.-+.|+-...+.++++.-..|
T Consensus 513 ~~LLeEY~~~GdisEA~~Cike---LgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg 573 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKE---LGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG 573 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHH---hCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 4677788888888888776654 4444 55677788888888888777777777665544
No 386
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.34 E-value=1.1e+02 Score=29.98 Aligned_cols=101 Identities=12% Similarity=-0.002 Sum_probs=56.8
Q ss_pred HHHHHhccchhHHHHHHHHHHHcCCCC---ChhhHHHHHHHHHhcCChHHHHHHHhccc-CCchhHHHHHHHHHhcCChh
Q 047359 54 LDALYRQNEIRLASCLYGAMVRDGVSP---NKFTWSLVAQILCRSGKFEVVLGLLDSGI-YSSVMYNLVIDFYSKKGDFG 129 (440)
Q Consensus 54 l~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~li~~~~~~~~~~ 129 (440)
++-+.+.+.+++|+++.+.-.. ..| -...+...+..+...|++++|-...-.|. .+..-|...+..+...++..
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~--~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~ 440 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIG--NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLT 440 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccC--CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccc
Confidence 4455666777777777665433 233 23456667777777788887777766665 45555666666666665554
Q ss_pred HHHHHHHHHhcCCCCCCchhhHHHHHHHHHh
Q 047359 130 AAFDRLNEMCNGRNLTPGFSTYSSILDGARR 160 (440)
Q Consensus 130 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 160 (440)
.... -+.. ..-..+...|..++-.+..
T Consensus 441 ~Ia~---~lPt-~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 441 DIAP---YLPT-GPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred hhhc---cCCC-CCcccCchHHHHHHHHHHH
Confidence 3322 2222 1112234456666665554
No 387
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=70.29 E-value=18 Score=22.31 Aligned_cols=26 Identities=4% Similarity=-0.097 Sum_probs=12.9
Q ss_pred hhHHHHHHHHcCCcHHHHHHHHHHHH
Q 047359 327 CCSSLMEYYCSNRQIDKAIALHIKIE 352 (440)
Q Consensus 327 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 352 (440)
..-.+|.+|...|++++|.++.+++.
T Consensus 25 NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 25 NHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33344555555555555555555444
No 388
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=70.04 E-value=40 Score=24.58 Aligned_cols=42 Identities=12% Similarity=0.045 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHcCCC--chhhHHHHHHHHHhcccHHHHHHHHHH
Q 047359 378 EAVRIFDYMKELKVV--SSSSFVIVVSRLCHLKELRKAMKNHDE 419 (440)
Q Consensus 378 ~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~ 419 (440)
.+.++|+.|.++++. .+..|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 667777777766655 555666666677777777777777764
No 389
>PHA02875 ankyrin repeat protein; Provisional
Probab=70.02 E-value=88 Score=28.54 Aligned_cols=16 Identities=25% Similarity=0.144 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHhccCC
Q 047359 342 DKAIALHIKIEKLKGS 357 (440)
Q Consensus 342 ~~a~~~~~~~~~~~~~ 357 (440)
++..+-.+.|....+.
T Consensus 297 ~~C~~ei~~mk~~~i~ 312 (413)
T PHA02875 297 EKCIIELRRIKSEKIG 312 (413)
T ss_pred HHHHHHHHHHHhhccC
Confidence 3455566667765554
No 390
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=69.71 E-value=1.1e+02 Score=29.50 Aligned_cols=27 Identities=19% Similarity=0.256 Sum_probs=19.3
Q ss_pred hHhHHHHHHHHHccCCcchHHHHHHHHH
Q 047359 12 SDALSLVLDCYSHKGLFMDGLEVYRMMR 39 (440)
Q Consensus 12 ~~~~~~li~~~~~~~~~~~A~~~~~~~~ 39 (440)
+.-| ..+..+.-.|.++.|.+++....
T Consensus 149 p~FW-~~v~~lvlrG~~~~a~~lL~~~s 175 (566)
T PF07575_consen 149 PDFW-DYVQRLVLRGLFDQARQLLRLHS 175 (566)
T ss_dssp HHHH-HHHHHHHHTT-HHHHHHHH-TTT
T ss_pred hhHH-HHHHHHHHcCCHHHHHHHHHhcc
Confidence 4555 47888889999999999985443
No 391
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=69.69 E-value=67 Score=27.08 Aligned_cols=25 Identities=16% Similarity=-0.059 Sum_probs=13.2
Q ss_pred chhhhHHHHHHHHcCCcHHHHHHHH
Q 047359 324 DSFCCSSLMEYYCSNRQIDKAIALH 348 (440)
Q Consensus 324 ~~~~~~~l~~~~~~~~~~~~a~~~~ 348 (440)
++.....+...|.+.|++.+|+..|
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHH
Confidence 4445555556666666666665544
No 392
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=68.74 E-value=87 Score=27.99 Aligned_cols=57 Identities=19% Similarity=0.244 Sum_probs=33.0
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHH-cCCcHHHHHHHHHHHHh
Q 047359 297 VASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYC-SNRQIDKAIALHIKIEK 353 (440)
Q Consensus 297 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~ 353 (440)
+..+.+.|-+..|.++.+-+...++.-|+.....+|..|+ +.++++--+++.+....
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 4445556666667666666666655445555555555554 55566655555555443
No 393
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=68.55 E-value=13 Score=31.54 Aligned_cols=29 Identities=17% Similarity=0.377 Sum_probs=16.3
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHcCCC
Q 047359 364 DVLLDGLFKDGRMEEAVRIFDYMKELKVV 392 (440)
Q Consensus 364 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 392 (440)
+.-|..-.+.||++.|+++++++.+.|..
T Consensus 261 ~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 261 NQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 45555555555555555555555555544
No 394
>PRK11619 lytic murein transglycosylase; Provisional
Probab=68.32 E-value=1.2e+02 Score=29.63 Aligned_cols=79 Identities=10% Similarity=-0.037 Sum_probs=47.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcccCCchhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCchhhHHHHHHHHHhcCCh
Q 047359 85 WSLVAQILCRSGKFEVVLGLLDSGIYSSVMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKT 164 (440)
Q Consensus 85 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 164 (440)
-...+..+.+.++++.....+..-+.+...-.....+....|+.++|......+=. .|. ........++..+.+.|..
T Consensus 102 r~~~l~~La~~~~w~~~~~~~~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~-~g~-~~p~~cd~l~~~~~~~g~l 179 (644)
T PRK11619 102 QSRFVNELARREDWRGLLAFSPEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWL-TGK-SLPNACDKLFSVWQQSGKQ 179 (644)
T ss_pred HHHHHHHHHHccCHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc-cCC-CCChHHHHHHHHHHHcCCC
Confidence 34455566677888888874434334444456677778888888777666666533 222 1234556666666655544
Q ss_pred h
Q 047359 165 E 165 (440)
Q Consensus 165 ~ 165 (440)
.
T Consensus 180 t 180 (644)
T PRK11619 180 D 180 (644)
T ss_pred C
Confidence 3
No 395
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=67.86 E-value=9.4 Score=19.77 Aligned_cols=25 Identities=12% Similarity=0.238 Sum_probs=19.8
Q ss_pred cHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 047359 409 ELRKAMKNHDEMLKMGHKPDEATYKQV 435 (440)
Q Consensus 409 ~~~~a~~~~~~m~~~~~~p~~~t~~~l 435 (440)
.++.|..+|++.+. +.|+..+|...
T Consensus 2 E~dRAR~IyeR~v~--~hp~~k~Wiky 26 (32)
T PF02184_consen 2 EFDRARSIYERFVL--VHPEVKNWIKY 26 (32)
T ss_pred hHHHHHHHHHHHHH--hCCCchHHHHH
Confidence 46889999999988 57888887654
No 396
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=67.82 E-value=82 Score=27.32 Aligned_cols=137 Identities=13% Similarity=0.021 Sum_probs=75.8
Q ss_pred CCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhc-CCCCcccccchHHHHHHHhhcCcHHHHHHHHHHHHh----cCC
Q 047359 142 RNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEK-KLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACD----EKI 216 (440)
Q Consensus 142 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~ 216 (440)
..++.|...++.+..+ +....++-.+..+...+. |-.-- ...+......|++.||.+.|.+.+++-.+ .|.
T Consensus 64 ~~i~~D~~~l~~m~~~--neeki~eld~~iedaeenlGE~ev--~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~ 139 (393)
T KOG0687|consen 64 LVIKLDQDLLNSMKKA--NEEKIKELDEKIEDAEENLGESEV--REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGH 139 (393)
T ss_pred cceeccHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcchHHH--HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhccc
Confidence 4455566555555543 222333333334444333 11111 45666778889999999999988876544 466
Q ss_pred CCCHHhHHHHHHH-HhhhccHHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 047359 217 ELQDDTCGCMLKA-LSKEGRVKEAIQIYHLISERGITVRD----SDYYAFVNVLCKEHQPEEVCGLLRDVVER 284 (440)
Q Consensus 217 ~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 284 (440)
+.|+..+..-+.. |....-..+-++..+.+.+.|...+. .+|..+- +....++.+|-.+|-+....
T Consensus 140 kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly--~msvR~Fk~Aa~Lfld~vsT 210 (393)
T KOG0687|consen 140 KIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLY--CMSVRNFKEAADLFLDSVST 210 (393)
T ss_pred chhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHH--HHHHHhHHHHHHHHHHHccc
Confidence 6666655544433 33333345555556666666654332 2333332 23345788888888776643
No 397
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=67.39 E-value=24 Score=20.98 Aligned_cols=34 Identities=24% Similarity=0.307 Sum_probs=17.3
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHHCCCCCCHHHHHH
Q 047359 399 IVVSRLCHLKELRKAMKNHDEMLKMGHKPDEATYKQ 434 (440)
Q Consensus 399 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ 434 (440)
.+.-++.+.|++++|.+..+.+++ ++|+..-...
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~ 39 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQS 39 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHH
Confidence 344455566666666666666655 4555544333
No 398
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.28 E-value=69 Score=26.30 Aligned_cols=19 Identities=11% Similarity=0.134 Sum_probs=10.9
Q ss_pred HhcCChHHHHHHHHHHHHc
Q 047359 266 CKEHQPEEVCGLLRDVVER 284 (440)
Q Consensus 266 ~~~~~~~~a~~~~~~~~~~ 284 (440)
...+++.+|.++|+++...
T Consensus 165 a~leqY~~Ai~iyeqva~~ 183 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARS 183 (288)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445566666666665544
No 399
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=67.07 E-value=96 Score=27.85 Aligned_cols=15 Identities=27% Similarity=0.366 Sum_probs=9.1
Q ss_pred CCHHHHHHHHHHHHh
Q 047359 304 GKWKEVEELLSAVLD 318 (440)
Q Consensus 304 ~~~~~a~~~~~~~~~ 318 (440)
+++..++++++++..
T Consensus 318 sky~~cl~~L~~~k~ 332 (466)
T KOG0686|consen 318 SKYASCLELLREIKP 332 (466)
T ss_pred hhHHHHHHHHHHhcc
Confidence 556666666666543
No 400
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=66.89 E-value=46 Score=25.01 Aligned_cols=63 Identities=17% Similarity=0.162 Sum_probs=44.3
Q ss_pred HHHHHHHhcCCccChHhHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 047359 33 EVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSG 96 (440)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 96 (440)
++.+.+.+.|.+++. .-..++..+...+..-.|.++++.+.+.+...+..|.-..++.+...|
T Consensus 7 ~~~~~lk~~glr~T~-qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 7 DAIERLKEAGLRLTP-QRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHcCCCcCH-HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 345566677766554 345677788878777899999999998876666666555566666665
No 401
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=66.82 E-value=37 Score=23.05 Aligned_cols=53 Identities=13% Similarity=0.115 Sum_probs=27.2
Q ss_pred HcCCCHHHHHHHHHHHHhc----CCCCc----hhhhHHHHHHHHcCCcHHHHHHHHHHHHh
Q 047359 301 CGKGKWKEVEELLSAVLDK----GLLLD----SFCCSSLMEYYCSNRQIDKAIALHIKIEK 353 (440)
Q Consensus 301 ~~~~~~~~a~~~~~~~~~~----~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 353 (440)
.+.|++..|.+.+....+. +..+. ......+.......|++++|...+++.++
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3457777775555544332 11110 11222233445566777777777777664
No 402
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=66.34 E-value=27 Score=26.21 Aligned_cols=25 Identities=16% Similarity=0.252 Sum_probs=10.0
Q ss_pred HHHHhhcCcHHHHHHHHHHHHhcCC
Q 047359 192 IQKLSDMGKTYAAEMIFKRACDEKI 216 (440)
Q Consensus 192 ~~~~~~~~~~~~a~~~~~~~~~~~~ 216 (440)
++.+.+.++.-.|.++++.+.+.++
T Consensus 27 l~~L~~~~~~~sAeei~~~l~~~~p 51 (145)
T COG0735 27 LELLLEADGHLSAEELYEELREEGP 51 (145)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHhCC
Confidence 3333333333444444444444333
No 403
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=66.23 E-value=57 Score=25.56 Aligned_cols=22 Identities=14% Similarity=0.119 Sum_probs=16.0
Q ss_pred HHHHHcCCcHHHHHHHHHHHHh
Q 047359 332 MEYYCSNRQIDKAIALHIKIEK 353 (440)
Q Consensus 332 ~~~~~~~~~~~~a~~~~~~~~~ 353 (440)
+-.|.+.|.+++|.+++++...
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc
Confidence 3457777788888887777766
No 404
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=66.20 E-value=23 Score=20.43 Aligned_cols=31 Identities=13% Similarity=0.056 Sum_probs=14.7
Q ss_pred hccchhHHHHHHHHHHHcCCCCChhhHHHHH
Q 047359 59 RQNEIRLASCLYGAMVRDGVSPNKFTWSLVA 89 (440)
Q Consensus 59 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 89 (440)
+.|-..++..++++|.+.|+.-+...+..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 3344445555555555555444444444433
No 405
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=66.11 E-value=49 Score=24.12 Aligned_cols=44 Identities=16% Similarity=0.068 Sum_probs=27.6
Q ss_pred hHHHHHHHHHhcCCCCcccccchHHHHHHHhhcCcHHHHHHHHHH
Q 047359 166 VSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKR 210 (440)
Q Consensus 166 ~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 210 (440)
.+.++|..|...|+-... ...|......+...|++++|.++|..
T Consensus 81 ~~~~if~~l~~~~IG~~~-A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKL-ALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTB-HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHH-HHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 677777777776654442 45566666666666777777666654
No 406
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.09 E-value=74 Score=26.17 Aligned_cols=58 Identities=17% Similarity=0.174 Sum_probs=30.5
Q ss_pred HHcCCcHHHHHHHHHHHHhccCCcCHHhHHH---HHH---HHHhcCcHHHHHHHHHHHHHcCCC
Q 047359 335 YCSNRQIDKAIALHIKIEKLKGSLDVATYDV---LLD---GLFKDGRMEEAVRIFDYMKELKVV 392 (440)
Q Consensus 335 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~---l~~---~~~~~g~~~~a~~~~~~~~~~~~~ 392 (440)
-+..+++.+|+.+|+++....+..+..-|.. ++. ++.-..+.-.+...+++-.+..|.
T Consensus 164 aa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~ 227 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPA 227 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCc
Confidence 3455677777777777766544433322221 111 112225555666666666666665
No 407
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=65.52 E-value=1.1e+02 Score=27.74 Aligned_cols=55 Identities=15% Similarity=0.139 Sum_probs=31.8
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCChh--hHHHHHHHHH--cCCCHHHHHHHHHHHHhc
Q 047359 264 VLCKEHQPEEVCGLLRDVVERGYIPCAM--ELSRFVASQC--GKGKWKEVEELLSAVLDK 319 (440)
Q Consensus 264 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~~~~~~a~~~~~~~~~~ 319 (440)
.+.+.+++..|.++++.+... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344677777777777777765 444433 3333334333 245566777777766543
No 408
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=65.19 E-value=49 Score=26.27 Aligned_cols=36 Identities=22% Similarity=0.098 Sum_probs=25.0
Q ss_pred CCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCC
Q 047359 356 GSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKV 391 (440)
Q Consensus 356 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 391 (440)
..|++.+|..++..+...|+.++|.+..+++...-|
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 356777777777777777777777777777766554
No 409
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=64.99 E-value=40 Score=22.76 Aligned_cols=52 Identities=17% Similarity=0.105 Sum_probs=30.8
Q ss_pred chhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCc-CHHhHHHHHHHHHhcCc
Q 047359 324 DSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSL-DVATYDVLLDGLFKDGR 375 (440)
Q Consensus 324 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 375 (440)
|...--.+...+...|+++.|++.+-++.+..... +...-..|+..+...|.
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 55666677778888888888888888777654332 23334455555544444
No 410
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=64.92 E-value=27 Score=27.73 Aligned_cols=33 Identities=9% Similarity=0.009 Sum_probs=19.5
Q ss_pred CCCchhhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 047359 144 LTPGFSTYSSILDGARRYEKTEVSDRIVGLMVE 176 (440)
Q Consensus 144 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 176 (440)
..|+..+|..++..+...|+.++|.+..+++..
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445666666666666666666666665555544
No 411
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=64.26 E-value=40 Score=22.53 Aligned_cols=14 Identities=21% Similarity=0.245 Sum_probs=6.3
Q ss_pred ccHHHHHHHHHHHH
Q 047359 234 GRVKEAIQIYHLIS 247 (440)
Q Consensus 234 ~~~~~a~~~~~~~~ 247 (440)
|+.+.|.+++..+.
T Consensus 50 g~~~~ar~LL~~L~ 63 (88)
T cd08819 50 GNESGARELLKRIV 63 (88)
T ss_pred CcHHHHHHHHHHhc
Confidence 44444444444444
No 412
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.08 E-value=1.5e+02 Score=29.17 Aligned_cols=100 Identities=15% Similarity=0.213 Sum_probs=68.3
Q ss_pred HHHHHccCCcchHHHHHHHHHhcCCcc---ChHhHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 047359 19 LDCYSHKGLFMDGLEVYRMMRVYGFVP---AVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRS 95 (440)
Q Consensus 19 i~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 95 (440)
|+-+.+.+.+++|+++.+..... .| -.......|..+.-.|++++|-...-.|... +..-|..-+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 55667788899999887765532 33 2456777888888899999999988888753 556677777777777
Q ss_pred CChHHHHHHHhccc--CCchhHHHHHHHHHh
Q 047359 96 GKFEVVLGLLDSGI--YSSVMYNLVIDFYSK 124 (440)
Q Consensus 96 ~~~~~a~~~~~~~~--~~~~~~~~li~~~~~ 124 (440)
++......++-.-. .+...|..++..+..
T Consensus 437 ~~l~~Ia~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 437 DQLTDIAPYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cccchhhccCCCCCcccCchHHHHHHHHHHH
Confidence 76655544443333 344567777776665
No 413
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=63.25 E-value=24 Score=22.09 Aligned_cols=49 Identities=14% Similarity=0.114 Sum_probs=22.5
Q ss_pred cChHhHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 047359 45 PAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILCR 94 (440)
Q Consensus 45 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 94 (440)
|....++.++..+++..-.+++...+.+..+.|. .+..+|..-++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 3344445555555555555555555555555442 344444444444443
No 414
>PRK10941 hypothetical protein; Provisional
Probab=63.09 E-value=94 Score=26.37 Aligned_cols=64 Identities=11% Similarity=-0.043 Sum_probs=39.8
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCch
Q 047359 330 SLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSS 394 (440)
Q Consensus 330 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 394 (440)
.+-.+|.+.++++.|+.+.+.+....+. ++.-+.--.-.|.+.|.+..|..-++...+.-|.++
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~P~-dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp 249 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFDPE-DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDP 249 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCch
Confidence 3445666777777777777777664333 444455555556677777777777776666655533
No 415
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=62.73 E-value=44 Score=22.38 Aligned_cols=14 Identities=21% Similarity=0.031 Sum_probs=6.2
Q ss_pred CcHHHHHHHHHHHH
Q 047359 339 RQIDKAIALHIKIE 352 (440)
Q Consensus 339 ~~~~~a~~~~~~~~ 352 (440)
|+.+.|.+++..+.
T Consensus 50 g~~~~ar~LL~~L~ 63 (88)
T cd08819 50 GNESGARELLKRIV 63 (88)
T ss_pred CcHHHHHHHHHHhc
Confidence 44444444444444
No 416
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=62.65 E-value=31 Score=21.55 Aligned_cols=49 Identities=14% Similarity=0.195 Sum_probs=24.5
Q ss_pred cCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHh
Q 047359 358 LDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCH 406 (440)
Q Consensus 358 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 406 (440)
|....++.++..+++..-.+.++..+.++...|.-+...|..-++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGSIDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 3444455555555555555555555555555554444444444444443
No 417
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=62.45 E-value=89 Score=25.89 Aligned_cols=60 Identities=13% Similarity=0.165 Sum_probs=39.2
Q ss_pred HHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhh-hccHHHHHHHHHHHHHc
Q 047359 190 YVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSK-EGRVKEAIQIYHLISER 249 (440)
Q Consensus 190 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~ 249 (440)
.+++.+-+.++++++.+.++++...+...+..-.+.+..+|-. .|....+++++..+.+.
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~ 66 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQK 66 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhh
Confidence 4667777788888888888888887777777777777666643 45555666666655443
No 418
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=62.32 E-value=1.6e+02 Score=30.40 Aligned_cols=30 Identities=10% Similarity=-0.038 Sum_probs=22.3
Q ss_pred ccchHHHHHHHhhcC--cHHHHHHHHHHHHhc
Q 047359 185 LSGNDYVIQKLSDMG--KTYAAEMIFKRACDE 214 (440)
Q Consensus 185 ~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~ 214 (440)
......++.+|.+.+ +++.|+.....+.+.
T Consensus 812 ~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 812 DKYLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred hhhHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 445566788888887 788888888887765
No 419
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=60.99 E-value=82 Score=26.30 Aligned_cols=57 Identities=9% Similarity=0.124 Sum_probs=33.6
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHc----CCC--chhhHHHHHHHHHhcccHHHHHHHHHHH
Q 047359 364 DVLLDGLFKDGRMEEAVRIFDYMKEL----KVV--SSSSFVIVVSRLCHLKELRKAMKNHDEM 420 (440)
Q Consensus 364 ~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m 420 (440)
..+...|.+.|+++.|.++|+.+... |-. ...+...+..++.+.|+.++.+.+.=++
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34556667777777777777766421 111 2334555666666777777666655444
No 420
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=60.66 E-value=97 Score=25.69 Aligned_cols=59 Identities=7% Similarity=0.085 Sum_probs=38.6
Q ss_pred HHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh-cCChHHHHHHHHHHHH
Q 047359 225 CMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCK-EHQPEEVCGLLRDVVE 283 (440)
Q Consensus 225 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~ 283 (440)
-++..+.+.|+++++...++++...+...+..-.+.+-.+|-. -|....++.++..+.+
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 3566777888888888888888888777777767766666632 3444556666665544
No 421
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=60.30 E-value=84 Score=24.87 Aligned_cols=25 Identities=8% Similarity=0.086 Sum_probs=18.0
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhc
Q 047359 153 SILDGARRYEKTEVSDRIVGLMVEK 177 (440)
Q Consensus 153 ~l~~~~~~~~~~~~a~~~~~~~~~~ 177 (440)
+++-.|-+..+|.++.++++.+.+.
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el 161 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHEL 161 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555677777888888888877664
No 422
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.26 E-value=1.9e+02 Score=29.02 Aligned_cols=48 Identities=17% Similarity=0.106 Sum_probs=28.5
Q ss_pred HHHHhcCChhHHHHHHHHHhcCCCCCCchh--hHHHHHHHHHhcCChhhHHHHHHHH
Q 047359 120 DFYSKKGDFGAAFDRLNEMCNGRNLTPGFS--TYSSILDGARRYEKTEVSDRIVGLM 174 (440)
Q Consensus 120 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~ 174 (440)
+.|...|++++|+++-+ ..|+.. .+..-...|.+.+++..|-+++.++
T Consensus 366 k~yLd~g~y~kAL~~ar-------~~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t 415 (911)
T KOG2034|consen 366 KTYLDKGEFDKALEIAR-------TRPDALETVLLKQADFLFQDKEYLRAAEIYAET 415 (911)
T ss_pred HHHHhcchHHHHHHhcc-------CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 45677777777766532 334432 3333344566667777777777666
No 423
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=60.01 E-value=31 Score=24.21 Aligned_cols=24 Identities=21% Similarity=0.152 Sum_probs=14.4
Q ss_pred HHHHHhccchhHHHHHHHHHHHcC
Q 047359 54 LDALYRQNEIRLASCLYGAMVRDG 77 (440)
Q Consensus 54 l~~~~~~~~~~~a~~~~~~~~~~~ 77 (440)
++.+-++...++|+++.+.|.+.|
T Consensus 68 iD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 68 IDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhC
Confidence 444455556666666666666665
No 424
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=59.97 E-value=1.8e+02 Score=28.46 Aligned_cols=163 Identities=10% Similarity=0.023 Sum_probs=91.5
Q ss_pred hHhHHHHHHHHH-ccCCcchHHHHHHHHHhcCCccChH-----hHHHHHHHHHhccchhHHHHHHHHHHHcC----CCCC
Q 047359 12 SDALSLVLDCYS-HKGLFMDGLEVYRMMRVYGFVPAVS-----ACNALLDALYRQNEIRLASCLYGAMVRDG----VSPN 81 (440)
Q Consensus 12 ~~~~~~li~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~-----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~ 81 (440)
..++-.+...+. ...+++.|...+++.....-.++.. ....++..+.+.+... |...+++..+.- ..+-
T Consensus 59 a~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w 137 (608)
T PF10345_consen 59 ARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAW 137 (608)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhH
Confidence 345555666665 5788999999999775432222221 2234456666665555 888888875531 1122
Q ss_pred hhhHHHH-HHHHHhcCChHHHHHHHhccc--------CCchhHHHHHHHHH--hcCChhHHHHHHHHHhcC---C-----
Q 047359 82 KFTWSLV-AQILCRSGKFEVVLGLLDSGI--------YSSVMYNLVIDFYS--KKGDFGAAFDRLNEMCNG---R----- 142 (440)
Q Consensus 82 ~~~~~~l-~~~~~~~~~~~~a~~~~~~~~--------~~~~~~~~li~~~~--~~~~~~~a~~~~~~~~~~---~----- 142 (440)
...+..+ +..+...++...|.+.++.+. +...++..++.+.. +.+..+.+.+.++++... .
T Consensus 138 ~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~ 217 (608)
T PF10345_consen 138 YYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPS 217 (608)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCC
Confidence 2233333 333333479999999988776 22333444444433 446567777777666220 1
Q ss_pred CCCCchhhHHHHHHHHH--hcCChhhHHHHHHHHH
Q 047359 143 NLTPGFSTYSSILDGAR--RYEKTEVSDRIVGLMV 175 (440)
Q Consensus 143 ~~~p~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~ 175 (440)
...|-..+|..+++.++ ..|+++.+...++++.
T Consensus 218 ~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 218 VHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred CCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 12344557777777544 5577666666555543
No 425
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=59.35 E-value=1.1e+02 Score=25.83 Aligned_cols=155 Identities=14% Similarity=0.027 Sum_probs=72.9
Q ss_pred hHHHHHHHHHccCCcchHHHHHHHHHhcCCccChHhHHHHHHHHHhccch-----hHHHHHHHHHHHcCCCCChhhHHHH
Q 047359 14 ALSLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEI-----RLASCLYGAMVRDGVSPNKFTWSLV 88 (440)
Q Consensus 14 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~l 88 (440)
..+.+++.+.+.+....|..+.+.+... +--..+...++......... ......+....+. ++. ...|..+
T Consensus 84 ~L~~iL~~lL~~~~~~~a~~i~~~y~~l--~~F~~~LE~LLh~vL~~e~~~~~~~~~~~~~L~~v~~l-l~~-f~~~l~I 159 (258)
T PF07064_consen 84 FLHHILRHLLRRNLDEEALEIASKYRSL--PYFSHALELLLHTVLEEEADSSEDSPIPDALLPRVISL-LQE-FPEYLEI 159 (258)
T ss_pred chHHHHHHHHhcCCcHHHHHHHHHhccC--CCcHHHHHHHHHHHHhhcccccccccchHHHHHHHHHH-HHc-CcchHHH
Confidence 3456778888888888888888877652 22234444444433222111 1111122221111 000 1123334
Q ss_pred HHHHHhcCChHHHHHHHhcccCCchhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCC-----chhhHHHHHHHHHhcCC
Q 047359 89 AQILCRSGKFEVVLGLLDSGIYSSVMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTP-----GFSTYSSILDGARRYEK 163 (440)
Q Consensus 89 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p-----~~~~~~~l~~~~~~~~~ 163 (440)
+..|.|.=+...-..+|+... + =..|..-|.+.|+.+.|-.++--+....+... +...-..++......++
T Consensus 160 vv~C~RKtE~~~W~~LF~~lg-~---P~dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a~~~~~ 235 (258)
T PF07064_consen 160 VVNCARKTEVRYWPYLFDYLG-S---PRDLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMALESGD 235 (258)
T ss_pred HHHHHHhhHHHHHHHHHHhcC-C---HHHHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHhccc
Confidence 444444444444444444442 1 12455566667777766555554433122222 22233344555555566
Q ss_pred hhhHHHHHHHHHh
Q 047359 164 TEVSDRIVGLMVE 176 (440)
Q Consensus 164 ~~~a~~~~~~~~~ 176 (440)
|+-+.++.+-+..
T Consensus 236 w~Lc~eL~RFL~~ 248 (258)
T PF07064_consen 236 WDLCFELVRFLKA 248 (258)
T ss_pred HHHHHHHHHHHHH
Confidence 6666665555544
No 426
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.56 E-value=1e+02 Score=29.62 Aligned_cols=86 Identities=12% Similarity=0.047 Sum_probs=61.9
Q ss_pred HcCCcHHHHHHHHHHHHhccCCcC------HHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhccc
Q 047359 336 CSNRQIDKAIALHIKIEKLKGSLD------VATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLKE 409 (440)
Q Consensus 336 ~~~~~~~~a~~~~~~~~~~~~~p~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 409 (440)
.+..++..+.++|..-... +..| ......|..+|....+.+.|.++++++.+.++.++.+-..+..+....|.
T Consensus 365 F~~~~Y~~s~~~y~~Sl~~-i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~ 443 (872)
T KOG4814|consen 365 FKMEKYVVSIRFYKLSLKD-IISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDK 443 (872)
T ss_pred HHHHHHHHHHHHHHHHHHh-ccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcc
Confidence 4556777777777665543 1111 23456677778888888999999999888887777777777778888888
Q ss_pred HHHHHHHHHHHHH
Q 047359 410 LRKAMKNHDEMLK 422 (440)
Q Consensus 410 ~~~a~~~~~~m~~ 422 (440)
-++|+........
T Consensus 444 Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 444 SEEALTCLQKIKS 456 (872)
T ss_pred hHHHHHHHHHHHh
Confidence 8888888776554
No 427
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=58.38 E-value=47 Score=31.77 Aligned_cols=88 Identities=16% Similarity=0.136 Sum_probs=55.6
Q ss_pred HHHHHHHhccchhHHHHHHHHHHHcC--CCCChhhHHHHHHHHHhcCChH------HHHHHHhccc--CCchhHHHHHHH
Q 047359 52 ALLDALYRQNEIRLASCLYGAMVRDG--VSPNKFTWSLVAQILCRSGKFE------VVLGLLDSGI--YSSVMYNLVIDF 121 (440)
Q Consensus 52 ~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~------~a~~~~~~~~--~~~~~~~~li~~ 121 (440)
+|+.+|...|++..+.++++.+.... -+.=...+|..++...+.|.++ .|.+++++.. -|..||..++.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Confidence 78899999999999999999887642 1222345677777777777653 4555555544 566667666655
Q ss_pred HHhcCChhHHHHHHHHHh
Q 047359 122 YSKKGDFGAAFDRLNEMC 139 (440)
Q Consensus 122 ~~~~~~~~~a~~~~~~~~ 139 (440)
-...-.-.-.+.++.+..
T Consensus 113 sln~t~~~l~~pvl~~~i 130 (1117)
T COG5108 113 SLNPTQRQLGLPVLHELI 130 (1117)
T ss_pred hcChHhHHhccHHHHHHH
Confidence 544333333344444443
No 428
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=57.87 E-value=1.4e+02 Score=26.51 Aligned_cols=88 Identities=9% Similarity=-0.085 Sum_probs=35.3
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHhcccCCchhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCc--hhhHHHHHHH
Q 047359 80 PNKFTWSLVAQILCRSGKFEVVLGLLDSGIYSSVMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPG--FSTYSSILDG 157 (440)
Q Consensus 80 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~ 157 (440)
|++.+.-.++.-|....+-+.....-..+ ....+.+-.++.+.+.....+++..+...+....+. ......++..
T Consensus 73 ~~~~~li~~~~~FV~~~n~eqlr~as~~f---~~lc~~l~~~~~~~~~p~~gi~ii~~av~k~~~~~~qlT~~H~~l~~~ 149 (422)
T KOG2582|consen 73 PDPETLIELLNDFVDENNGEQLRLASEIF---FPLCHDLTEAVVKKNKPLRGIRIIMQAVDKMQPSNGQLTSIHADLLQL 149 (422)
T ss_pred CCHHHHHHHHHHHHHhcChHHHhhHHHHH---HHHHHHHHHHHHhcCCccccchHHHHHHHHhccCccchhhhHHHHHHH
Confidence 45555555555555554432221111111 112344555555555554433333332221111111 1122344555
Q ss_pred HHhcCChhhHHHH
Q 047359 158 ARRYEKTEVSDRI 170 (440)
Q Consensus 158 ~~~~~~~~~a~~~ 170 (440)
+.+.+++..+...
T Consensus 150 ~L~ak~y~~~~p~ 162 (422)
T KOG2582|consen 150 CLEAKDYASVLPY 162 (422)
T ss_pred HHHhhcccccCCc
Confidence 5566665544433
No 429
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=57.73 E-value=23 Score=30.17 Aligned_cols=44 Identities=14% Similarity=0.117 Sum_probs=34.5
Q ss_pred cChH-hHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHH
Q 047359 45 PAVS-ACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLV 88 (440)
Q Consensus 45 ~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 88 (440)
|+.. -|+..|..-.+.|++++|++++++..+.|+.--..+|...
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~ 298 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISS 298 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 4444 4679999999999999999999999999976555555433
No 430
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=57.53 E-value=1.1e+02 Score=25.39 Aligned_cols=94 Identities=11% Similarity=-0.038 Sum_probs=46.9
Q ss_pred HHHHcCCCHHHHHHHHHHHHh------cCCCCchhhhHH-----------HHHHHHcCCcHHHHHHHHHHHHhccCCcCH
Q 047359 298 ASQCGKGKWKEVEELLSAVLD------KGLLLDSFCCSS-----------LMEYYCSNRQIDKAIALHIKIEKLKGSLDV 360 (440)
Q Consensus 298 ~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~~~~~-----------l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 360 (440)
+-+.+.|++.+|..-|.+... ..-+|...-|.. ..+++...|++-++++.-.++...... |.
T Consensus 186 N~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~-nv 264 (329)
T KOG0545|consen 186 NRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPG-NV 264 (329)
T ss_pred hhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCc-hH
Confidence 345567778887777766542 112333322221 122333445555555555555554322 44
Q ss_pred HhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCC
Q 047359 361 ATYDVLLDGLFKDGRMEEAVRIFDYMKELKVV 392 (440)
Q Consensus 361 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 392 (440)
..|..-..+.+..=+.++|..-|....+.+|.
T Consensus 265 KA~frRakAhaa~Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 265 KAYFRRAKAHAAVWNEAEAKADLQKVLELDPS 296 (329)
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence 45544444555455555555555555555433
No 431
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=57.28 E-value=49 Score=30.20 Aligned_cols=108 Identities=12% Similarity=-0.011 Sum_probs=71.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCC
Q 047359 261 FVNVLCKEHQPEEVCGLLRDVVERGYIP-CAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNR 339 (440)
Q Consensus 261 l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 339 (440)
-+..+...+.++.|..++.++++.. | +...|..-..++.+.+++..|..=+..+.+..+. ....|..=..++.+.+
T Consensus 10 ean~~l~~~~fd~avdlysKaI~ld--pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~-~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIELD--PNCAIYFANRALAHLKVESFGGALHDALKAIELDPT-YIKAYVRRGTAVMALG 86 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHhcC--CcceeeechhhhhheeechhhhHHHHHHhhhhcCch-hhheeeeccHHHHhHH
Confidence 3455567788999999999998863 5 4444555557888889999998888877776422 2223333334455556
Q ss_pred cHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhc
Q 047359 340 QIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKD 373 (440)
Q Consensus 340 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 373 (440)
.+.+|...|+.... +.|+..-....+.-|-+.
T Consensus 87 ~~~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec~~~ 118 (476)
T KOG0376|consen 87 EFKKALLDLEKVKK--LAPNDPDATRKIDECNKI 118 (476)
T ss_pred HHHHHHHHHHHhhh--cCcCcHHHHHHHHHHHHH
Confidence 67777777776665 567777776666665444
No 432
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=56.31 E-value=80 Score=23.38 Aligned_cols=52 Identities=13% Similarity=0.126 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHh-ccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCC
Q 047359 341 IDKAIALHIKIEK-LKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVV 392 (440)
Q Consensus 341 ~~~a~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 392 (440)
..+.+.+++.+.+ ....-.......|.-++.+.++++.+.++.+.+.+..|.
T Consensus 51 v~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~ 103 (149)
T KOG3364|consen 51 VQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPN 103 (149)
T ss_pred HHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCC
Confidence 3344455555554 111112223334444555555566555555555554444
No 433
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=55.91 E-value=2.7e+02 Score=29.27 Aligned_cols=19 Identities=16% Similarity=0.221 Sum_probs=12.6
Q ss_pred HHhcCChhHHHHHHHHHhc
Q 047359 122 YSKKGDFGAAFDRLNEMCN 140 (440)
Q Consensus 122 ~~~~~~~~~a~~~~~~~~~ 140 (440)
|...|...+|+..|.+...
T Consensus 930 yl~tge~~kAl~cF~~a~S 948 (1480)
T KOG4521|consen 930 YLGTGEPVKALNCFQSALS 948 (1480)
T ss_pred eecCCchHHHHHHHHHHhh
Confidence 5566777777777776643
No 434
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=55.51 E-value=16 Score=26.64 Aligned_cols=22 Identities=18% Similarity=0.246 Sum_probs=13.9
Q ss_pred cCChhhHHHHHHHHHhcCCCCc
Q 047359 161 YEKTEVSDRIVGLMVEKKLLPK 182 (440)
Q Consensus 161 ~~~~~~a~~~~~~~~~~~~~~~ 182 (440)
.|.-..|..+|+.|++.|-+|+
T Consensus 108 ygsk~DaY~VF~kML~~G~pPd 129 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPD 129 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCc
Confidence 4555566666666666666655
No 435
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=55.03 E-value=85 Score=26.45 Aligned_cols=59 Identities=14% Similarity=0.094 Sum_probs=45.7
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcccHHHHHHHHHHHHHC
Q 047359 365 VLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLKELRKAMKNHDEMLKM 423 (440)
Q Consensus 365 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 423 (440)
.+-..+.++++++.|....+.....+|.++.-+..-..+|.+.|...-|++-+....++
T Consensus 186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~ 244 (269)
T COG2912 186 NLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEH 244 (269)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHh
Confidence 34456778888888888888888888887777777777888888888888888877663
No 436
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=54.83 E-value=43 Score=21.83 Aligned_cols=23 Identities=22% Similarity=0.167 Sum_probs=11.2
Q ss_pred HHHHhccchhHHHHHHHHHHHcC
Q 047359 55 DALYRQNEIRLASCLYGAMVRDG 77 (440)
Q Consensus 55 ~~~~~~~~~~~a~~~~~~~~~~~ 77 (440)
+.+.++.-.++|+++++.|.+.|
T Consensus 39 D~L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 39 DFLRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred HHHHHhCcHHHHHHHHHHHHHhC
Confidence 33444444555555555555444
No 437
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=54.75 E-value=1.5e+02 Score=25.90 Aligned_cols=25 Identities=16% Similarity=0.202 Sum_probs=14.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHH
Q 047359 257 DYYAFVNVLCKEHQPEEVCGLLRDV 281 (440)
Q Consensus 257 ~~~~l~~~~~~~~~~~~a~~~~~~~ 281 (440)
.+.....-|++-|+-+.|++.+...
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t 130 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKT 130 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3444455566666666666655544
No 438
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=54.50 E-value=1.8e+02 Score=26.99 Aligned_cols=40 Identities=15% Similarity=0.178 Sum_probs=28.8
Q ss_pred cCChhHHHHHHHHHhcCCCCCCchhhHHHHHHHHHhcCChh
Q 047359 125 KGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTE 165 (440)
Q Consensus 125 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 165 (440)
.+.++..++++..+.. .|.......++.-...|.+.|...
T Consensus 30 ~~~~d~cl~~l~~l~t-~~~~~~~v~~n~av~~~~kt~~tq 69 (696)
T KOG2471|consen 30 NSEFDRCLELLQELET-RGESSGPVLHNRAVVSYYKTGCTQ 69 (696)
T ss_pred CcchHHHHHHHHHHHh-ccccccceeeehhhHHHHhcccch
Confidence 5778888888888876 666655666777777777777654
No 439
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=54.42 E-value=1.4e+02 Score=25.68 Aligned_cols=21 Identities=19% Similarity=0.290 Sum_probs=13.9
Q ss_pred chhhhHHHHHHHHcCCcHHHH
Q 047359 324 DSFCCSSLMEYYCSNRQIDKA 344 (440)
Q Consensus 324 ~~~~~~~l~~~~~~~~~~~~a 344 (440)
...+|.-|+.+++..|+.+-.
T Consensus 320 hlK~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 320 HLKQYAPLLAAFCSQGQSELE 340 (412)
T ss_pred HHHhhhHHHHHHhcCChHHHH
Confidence 344567777777777776654
No 440
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=54.20 E-value=2.3e+02 Score=28.03 Aligned_cols=114 Identities=9% Similarity=0.040 Sum_probs=64.0
Q ss_pred HHHHHHHHHHhcCCCC---CHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCCh----------hhHHHHHHHHHhcC
Q 047359 203 AAEMIFKRACDEKIEL---QDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRD----------SDYYAFVNVLCKEH 269 (440)
Q Consensus 203 ~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------~~~~~l~~~~~~~~ 269 (440)
+-..++.+|..+--.| ...+...++-.|....+++...++.+.++.. ||. +.|.-.++-=-+-|
T Consensus 181 ~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~G 257 (1226)
T KOG4279|consen 181 QLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPG 257 (1226)
T ss_pred HHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCc
Confidence 3445566666543333 3455666777788888888888888888764 322 12222333333557
Q ss_pred ChHHHHHHHHHHHHcC--CCCChhhHHH-------HHHHHHcCCCHHHHHHHHHHHHhc
Q 047359 270 QPEEVCGLLRDVVERG--YIPCAMELSR-------FVASQCGKGKWKEVEELLSAVLDK 319 (440)
Q Consensus 270 ~~~~a~~~~~~~~~~~--~~~~~~~~~~-------l~~~~~~~~~~~~a~~~~~~~~~~ 319 (440)
+-++|+...-.+.+.. +.||...... +-..|...+..+.|.+.|++..+.
T Consensus 258 DRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFev 316 (1226)
T KOG4279|consen 258 DRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEV 316 (1226)
T ss_pred cHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhcc
Confidence 7778887777766542 3455432211 111233345556677777766553
No 441
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=54.11 E-value=1.3e+02 Score=25.27 Aligned_cols=184 Identities=10% Similarity=-0.021 Sum_probs=87.2
Q ss_pred hhccHHHHHHHHHHHHHcCCCCChhhH--HHH-HHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHH-
Q 047359 232 KEGRVKEAIQIYHLISERGITVRDSDY--YAF-VNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWK- 307 (440)
Q Consensus 232 ~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~- 307 (440)
+...-..|+++-++....++. +-..| ... +..+ ..+..+-++.+.++.+.+ +.+-..|.--=......|++.
T Consensus 55 ~~E~S~RAl~LT~d~i~lNpA-nYTVW~yRr~iL~~l--~~dL~~El~~l~eI~e~n-pKNYQvWHHRr~ive~l~d~s~ 130 (318)
T KOG0530|consen 55 KNEKSPRALQLTEDAIRLNPA-NYTVWQYRRVILRHL--MSDLNKELEYLDEIIEDN-PKNYQVWHHRRVIVELLGDPSF 130 (318)
T ss_pred ccccCHHHHHHHHHHHHhCcc-cchHHHHHHHHHHHh--HHHHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHhcCccc
Confidence 444555666666666554321 11112 111 1111 123445555666665543 334444432222222334555
Q ss_pred HHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHh-cC-----cHHHHHH
Q 047359 308 EVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFK-DG-----RMEEAVR 381 (440)
Q Consensus 308 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g-----~~~~a~~ 381 (440)
.-+++.+.|....-+ +-..|..---++..-+.++.=+.+..++++..+. |-..|+.-.-.... .| ..+.-..
T Consensus 131 rELef~~~~l~~DaK-NYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~-NNSAWN~Ryfvi~~~~~~~~~~~le~El~ 208 (318)
T KOG0530|consen 131 RELEFTKLMLDDDAK-NYHAWSHRQWVLRFFKDYEDELAYADELLEEDIR-NNSAWNQRYFVITNTKGVISKAELERELN 208 (318)
T ss_pred chHHHHHHHHhcccc-chhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhh-ccchhheeeEEEEeccCCccHHHHHHHHH
Confidence 555666666654333 5555655555555666677777777777776554 33344321111011 11 1222333
Q ss_pred HHHHHHHcCCCchhhHHHHHHHHHh-cc--cHHHHHHHHHHHH
Q 047359 382 IFDYMKELKVVSSSSFVIVVSRLCH-LK--ELRKAMKNHDEML 421 (440)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~l~~~~~~-~g--~~~~a~~~~~~m~ 421 (440)
+..+++..-|.+..+|+-|...+.. .| ...+...+...+.
T Consensus 209 yt~~~I~~vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~ 251 (318)
T KOG0530|consen 209 YTKDKILLVPNNESAWNYLKGLLELDSGLSSDSKVVSFVENLY 251 (318)
T ss_pred HHHHHHHhCCCCccHHHHHHHHHHhccCCcCCchHHHHHHHHh
Confidence 4445555555577777776665553 33 1233444444443
No 442
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=53.45 E-value=1.6e+02 Score=25.89 Aligned_cols=107 Identities=7% Similarity=0.040 Sum_probs=69.5
Q ss_pred HHHHHhcCCCCCHHhHHHHHHHHhhhcc------------HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHH
Q 047359 208 FKRACDEKIELQDDTCGCMLKALSKEGR------------VKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVC 275 (440)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 275 (440)
+++..+..+. |+.+|-.++..--..-. .+.-+.++++..+.++ -+......++..+.+..+.++..
T Consensus 8 l~~~v~~~P~-di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 8 LNRRVRENPH-DIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHhCcc-cHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHH
Confidence 3344444444 78888888765433211 3556778888888754 46777888888888888999999
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHc---CCCHHHHHHHHHHHH
Q 047359 276 GLLRDVVERGYIPCAMELSRFVASQCG---KGKWKEVEELLSAVL 317 (440)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~ 317 (440)
+-++.+.... +-+...|...+..... .-.++....+|.+..
T Consensus 86 ~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l 129 (321)
T PF08424_consen 86 KKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVYEKCL 129 (321)
T ss_pred HHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHH
Confidence 9999998863 2356667666655443 234555555555443
No 443
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=53.21 E-value=1.3e+02 Score=24.69 Aligned_cols=97 Identities=18% Similarity=0.135 Sum_probs=48.6
Q ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCC---chhhh--HHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHH
Q 047359 287 IPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLL---DSFCC--SSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVA 361 (440)
Q Consensus 287 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 361 (440)
.+...-++.|+--|.-...+.+|.+.|..-. |+.| +..++ ..-|......|+.+.|++....+...-+.-|..
T Consensus 23 ~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~--~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~ 100 (228)
T KOG2659|consen 23 SVMREDLNRLVMNYLVHEGYVEAAEKFAKES--GIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRE 100 (228)
T ss_pred CcchhhHHHHHHHHHHhccHHHHHHHhcccc--CCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchh
Confidence 3444555565555555555555554443322 2222 22222 234555667777777777776665433333433
Q ss_pred hHHHHHH----HHHhcCcHHHHHHHHHH
Q 047359 362 TYDVLLD----GLFKDGRMEEAVRIFDY 385 (440)
Q Consensus 362 ~~~~l~~----~~~~~g~~~~a~~~~~~ 385 (440)
.+-.|.. -..+.|..++|+++.+.
T Consensus 101 l~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 101 LFFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3322221 23456666666666553
No 444
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=53.07 E-value=1.8e+02 Score=26.46 Aligned_cols=53 Identities=15% Similarity=0.172 Sum_probs=26.1
Q ss_pred HHHHHHHHhcCChHHHHHHHhccc------------CCchhHHHHHHHHHhcCChhHHHHHHHHH
Q 047359 86 SLVAQILCRSGKFEVVLGLLDSGI------------YSSVMYNLVIDFYSKKGDFGAAFDRLNEM 138 (440)
Q Consensus 86 ~~l~~~~~~~~~~~~a~~~~~~~~------------~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 138 (440)
..|++..+-.||+..|+++++.+. -.+.++-.+.-+|...+++..|.+.|...
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555566666665555544 11223334444455555555555555544
No 445
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=53.01 E-value=2.4e+02 Score=27.86 Aligned_cols=27 Identities=22% Similarity=0.416 Sum_probs=20.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHc
Q 047359 258 YYAFVNVLCKEHQPEEVCGLLRDVVER 284 (440)
Q Consensus 258 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 284 (440)
|..+.+++.-..+.+.+.++++.+.+.
T Consensus 213 y~~vc~c~v~Ldd~~~va~ll~kL~~e 239 (929)
T KOG2062|consen 213 YFSVCQCYVFLDDAEAVADLLEKLVKE 239 (929)
T ss_pred eeeeeeeeEEcCCHHHHHHHHHHHHhc
Confidence 555677777888888888888888773
No 446
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=52.49 E-value=60 Score=29.51 Aligned_cols=19 Identities=11% Similarity=-0.041 Sum_probs=11.6
Q ss_pred HHHHHhccchhHHHHHHHH
Q 047359 54 LDALYRQNEIRLASCLYGA 72 (440)
Q Consensus 54 l~~~~~~~~~~~a~~~~~~ 72 (440)
..-++..|.++.|.+++++
T Consensus 125 aadhvAAGsFetAm~LLnr 143 (422)
T PF06957_consen 125 AADHVAAGSFETAMQLLNR 143 (422)
T ss_dssp HHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHH
Confidence 3445666777777777665
No 447
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=52.43 E-value=63 Score=27.00 Aligned_cols=60 Identities=15% Similarity=0.116 Sum_probs=41.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhcC---CC-CCCchhhHHHHHHHHHhcCChhhHHHHHHHHH
Q 047359 116 NLVIDFYSKKGDFGAAFDRLNEMCNG---RN-LTPGFSTYSSILDGARRYEKTEVSDRIVGLMV 175 (440)
Q Consensus 116 ~~li~~~~~~~~~~~a~~~~~~~~~~---~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 175 (440)
-.+...|.+.|++++|.++|+.+... .| ..+...+...+..++.+.|+.+....+--++.
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 45667788888888888888887431 22 22345566777888888888888777655543
No 448
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=52.41 E-value=37 Score=27.65 Aligned_cols=60 Identities=17% Similarity=0.092 Sum_probs=43.5
Q ss_pred HHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCch
Q 047359 334 YYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSS 394 (440)
Q Consensus 334 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 394 (440)
...+.++.+.|.+++.+....-.. ....|..+...-.+.|+.+.|.+.+++..+.+|.+.
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~-w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPE-WAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCch-hhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 345667788888888887764322 556777777777788888888888888888777643
No 449
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=52.27 E-value=81 Score=22.24 Aligned_cols=52 Identities=19% Similarity=0.123 Sum_probs=34.9
Q ss_pred HHHHHHccCCcchHHHHHHHHHhcCCccChHhHHHHHHHHHhccchhHHHHHHHHHHH
Q 047359 18 VLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVR 75 (440)
Q Consensus 18 li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 75 (440)
++..+.+..+.-...++-+.+.+.+ -|..|+..|...|..++|.+++.++.+
T Consensus 16 ~l~~llr~~N~C~~~~~e~~L~~~~------~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 16 LLGPLLRLPNYCDLEEVEEVLKEHG------KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHccCCcCCHHHHHHHHHHcC------CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 3444444445554444444444433 488888899999999999999988876
No 450
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=52.07 E-value=47 Score=28.47 Aligned_cols=76 Identities=12% Similarity=0.058 Sum_probs=42.0
Q ss_pred chhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHH-HHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHH
Q 047359 324 DSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDV-LLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIV 400 (440)
Q Consensus 324 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 400 (440)
|+..|...+....+.|.+.+...++.+..+..+. |...|-. --.-+...++++.+..+|.+..+.++.+|..|...
T Consensus 106 D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~-nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ey 182 (435)
T COG5191 106 DPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPL-NVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEY 182 (435)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHH
Confidence 5555555555444555566666666666654322 4444422 12234456677777777777776666666655543
No 451
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=51.75 E-value=92 Score=22.71 Aligned_cols=40 Identities=10% Similarity=0.031 Sum_probs=24.2
Q ss_pred HHHHHHHHHHcCCC--chhhHHHHHHHHHhcccHHHHHHHHH
Q 047359 379 AVRIFDYMKELKVV--SSSSFVIVVSRLCHLKELRKAMKNHD 418 (440)
Q Consensus 379 a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~ 418 (440)
..++|..|.++++- -...|......+...|++.+|.++|+
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45566666666555 34455555666666666666666664
No 452
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=50.53 E-value=1.8e+02 Score=25.66 Aligned_cols=53 Identities=13% Similarity=0.069 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHhccCCcCH----HhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchh
Q 047359 341 IDKAIALHIKIEKLKGSLDV----ATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSS 395 (440)
Q Consensus 341 ~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 395 (440)
.++...++..+++. -|+. .-|-.++......|.++..+.+|+++...|..+..
T Consensus 119 ~eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPie 175 (353)
T PF15297_consen 119 KEEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIE 175 (353)
T ss_pred HHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHH
Confidence 44566666666653 2332 34556666666667777777777777766666443
No 453
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=50.53 E-value=2e+02 Score=26.21 Aligned_cols=62 Identities=13% Similarity=-0.000 Sum_probs=39.9
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcC-----CCCcccccchHHHHHHHhhcCcHHHHHHHHHHHH
Q 047359 151 YSSILDGARRYEKTEVSDRIVGLMVEKK-----LLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRAC 212 (440)
Q Consensus 151 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 212 (440)
...|++.++-.||+..|+++++.+.-.. ..|.....++..+.-+|...+++.+|.+.|..+.
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666677777777777766543211 1122226667777888888888888888887764
No 454
>PRK09462 fur ferric uptake regulator; Provisional
Probab=50.26 E-value=84 Score=23.67 Aligned_cols=61 Identities=16% Similarity=0.120 Sum_probs=38.1
Q ss_pred HHHhcCCCCchhhhHHHHHHHHcC-CcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcH
Q 047359 315 AVLDKGLLLDSFCCSSLMEYYCSN-RQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRM 376 (440)
Q Consensus 315 ~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 376 (440)
.+.+.|.+++.. -..++..+... +..-.|.++++.+.+.+...+..|...-+..+...|-+
T Consensus 7 ~l~~~glr~T~q-R~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 7 ALKKAGLKVTLP-RLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 345556664433 33444555543 45778888888888877666766666666666666643
No 455
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=49.73 E-value=1.8e+02 Score=25.41 Aligned_cols=59 Identities=12% Similarity=0.124 Sum_probs=31.2
Q ss_pred HHHHHHcCCcHHHHHHHHHHHHhccCCcC-HHhHHHHHHHHHhcCcHHHHHHHHHHHHHc
Q 047359 331 LMEYYCSNRQIDKAIALHIKIEKLKGSLD-VATYDVLLDGLFKDGRMEEAVRIFDYMKEL 389 (440)
Q Consensus 331 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 389 (440)
+..+..+.|+..+|.+.++.+.+.-.-.+ ......|+.++....-+.....++-+..+.
T Consensus 281 LAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdi 340 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDI 340 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 33344466777777777776665321101 113345666666665555555555544433
No 456
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=48.90 E-value=1.8e+02 Score=28.17 Aligned_cols=76 Identities=9% Similarity=0.010 Sum_probs=48.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhcC-CCCCCchhhHHHHHHHHHhcCChhh------HHHHHHHHHhcCCCCcccccchH
Q 047359 117 LVIDFYSKKGDFGAAFDRLNEMCNG-RNLTPGFSTYSSILDGARRYEKTEV------SDRIVGLMVEKKLLPKHFLSGND 189 (440)
Q Consensus 117 ~li~~~~~~~~~~~a~~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~~~~~~------a~~~~~~~~~~~~~~~~~~~~~~ 189 (440)
+|..+|..+|++..+.++++..... .|-+.=...+|..++...+.|.++- +.+.++... +.-+ ..+|.
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d--~~t~a 107 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGD--SLTYA 107 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCc--chHHH
Confidence 7888999999999999998888651 2222334567778888888887643 223333222 3334 56666
Q ss_pred HHHHHHhh
Q 047359 190 YVIQKLSD 197 (440)
Q Consensus 190 ~l~~~~~~ 197 (440)
.++++...
T Consensus 108 ll~~~sln 115 (1117)
T COG5108 108 LLCQASLN 115 (1117)
T ss_pred HHHHhhcC
Confidence 66655444
No 457
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=48.68 E-value=1.5e+02 Score=24.18 Aligned_cols=33 Identities=6% Similarity=0.036 Sum_probs=22.0
Q ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHCCCCC
Q 047359 395 SSFVIVVSRLCHLKELRKAMKNHDEMLKMGHKP 427 (440)
Q Consensus 395 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p 427 (440)
.....++....+.|+.++|.+.|.+....+-.+
T Consensus 166 ~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 166 TLLYLIGELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 344555566667888888888888877754333
No 458
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=48.36 E-value=71 Score=20.44 Aligned_cols=15 Identities=27% Similarity=0.386 Sum_probs=8.9
Q ss_pred ccHHHHHHHHHHHHH
Q 047359 408 KELRKAMKNHDEMLK 422 (440)
Q Consensus 408 g~~~~a~~~~~~m~~ 422 (440)
|....|++-|++|..
T Consensus 59 G~L~~aL~ey~~~~g 73 (82)
T PF11123_consen 59 GELAAALEEYKKMVG 73 (82)
T ss_pred HHHHHHHHHHHHHcC
Confidence 445566666666654
No 459
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.26 E-value=89 Score=21.54 Aligned_cols=29 Identities=31% Similarity=0.149 Sum_probs=14.5
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHcCCC
Q 047359 364 DVLLDGLFKDGRMEEAVRIFDYMKELKVV 392 (440)
Q Consensus 364 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 392 (440)
..|.-.|++.|+.+.|.+-|+.=+...|.
T Consensus 76 AhLGlLys~~G~~e~a~~eFetEKalFPE 104 (121)
T COG4259 76 AHLGLLYSNSGKDEQAVREFETEKALFPE 104 (121)
T ss_pred HHHHHHHhhcCChHHHHHHHHHhhhhCcc
Confidence 34444455555555555555544444433
No 460
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=48.24 E-value=1.8e+02 Score=25.12 Aligned_cols=72 Identities=15% Similarity=0.322 Sum_probs=47.2
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhcccCCchhHHHHHHHHHh----------cCChhHHHHHHH
Q 047359 67 SCLYGAMVRDGVSPNKFTWSLVAQILCRSGKFEVVLGLLDSGIYSSVMYNLVIDFYSK----------KGDFGAAFDRLN 136 (440)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~li~~~~~----------~~~~~~a~~~~~ 136 (440)
.++++.+.+.++.|.-.++.-+.-.+...=.+..++.+++.+..|..-|..|+..|+. .|++....++++
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~rfd~Ll~iCcsmlil~Re~il~~DF~~nmkLLQ 342 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQRFDFLLYICCSMLILVRERILEGDFTVNMKLLQ 342 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHh
Confidence 5667777777777777666666656666666777777777777555556666665553 477776666665
Q ss_pred HH
Q 047359 137 EM 138 (440)
Q Consensus 137 ~~ 138 (440)
.-
T Consensus 343 ~y 344 (370)
T KOG4567|consen 343 NY 344 (370)
T ss_pred cC
Confidence 54
No 461
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=47.86 E-value=65 Score=19.89 Aligned_cols=32 Identities=9% Similarity=-0.029 Sum_probs=13.2
Q ss_pred cCCcHHHHHHHHHHHHhccCCcCHHhHHHHHH
Q 047359 337 SNRQIDKAIALHIKIEKLKGSLDVATYDVLLD 368 (440)
Q Consensus 337 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 368 (440)
..|++=+|-++++.+=.....|....+..+|.
T Consensus 11 n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq 42 (62)
T PF03745_consen 11 NAGDFFEAHEVLEELWKAAPGPERDFLQGLIQ 42 (62)
T ss_dssp HTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHH
T ss_pred cCCCHHHhHHHHHHHHHHCCcchHHHHHHHHH
Confidence 44555555555555543222223334444443
No 462
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=47.79 E-value=2.1e+02 Score=25.82 Aligned_cols=62 Identities=8% Similarity=-0.033 Sum_probs=29.9
Q ss_pred hHHHHHHHHhhhccHHHHHHHHHHHHHcC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047359 222 TCGCMLKALSKEGRVKEAIQIYHLISERG--ITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVE 283 (440)
Q Consensus 222 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 283 (440)
.+.-+..-|...|+++.|++.|.+...-- ..-....|..+|..-.-.|+|.....+..+..+
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 44455556666666666666666633310 001122233333334445555555555555443
No 463
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=47.77 E-value=1.7e+02 Score=24.69 Aligned_cols=24 Identities=17% Similarity=0.231 Sum_probs=12.4
Q ss_pred chhHHHHHHHHHhcCChhHHHHHH
Q 047359 112 SVMYNLVIDFYSKKGDFGAAFDRL 135 (440)
Q Consensus 112 ~~~~~~li~~~~~~~~~~~a~~~~ 135 (440)
+.....+...|.+.|++.+|...|
T Consensus 90 p~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 90 PELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHH
Confidence 334455555566666666555444
No 464
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=47.39 E-value=1.3e+02 Score=23.42 Aligned_cols=35 Identities=6% Similarity=-0.006 Sum_probs=14.6
Q ss_pred CHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCC
Q 047359 305 KWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNR 339 (440)
Q Consensus 305 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 339 (440)
+.-.|.++++.+.+.+..++..|...-+..+...|
T Consensus 40 ~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 40 GAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred CCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 33344444444444444334333333333333333
No 465
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=47.08 E-value=77 Score=22.46 Aligned_cols=42 Identities=19% Similarity=0.162 Sum_probs=19.2
Q ss_pred HHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 047359 56 ALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSGK 97 (440)
Q Consensus 56 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 97 (440)
.+...+..-.|.++++.+.+.+...+..|.-..++.+...|-
T Consensus 9 ~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 9 VLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred HHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 333333344455555555544444444444444444444443
No 466
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=47.06 E-value=1.9e+02 Score=24.96 Aligned_cols=113 Identities=11% Similarity=0.058 Sum_probs=0.0
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCc
Q 047359 296 FVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGR 375 (440)
Q Consensus 296 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 375 (440)
++....+.++.......++.+. ....-...++.....|++..|++++.+..+ -...+..+-..-.-..+
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~-----~l~~l~~~~c~~~L~~~ 172 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQ-----LLEELKGYSCVRHLSSQ 172 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----HHHhcccchHHHHHhHH
Q ss_pred HHHHHHHHHHHHHcCCC------chhhHHHHHHHHHhcccHHHHHHHHHH
Q 047359 376 MEEAVRIFDYMKELKVV------SSSSFVIVVSRLCHLKELRKAMKNHDE 419 (440)
Q Consensus 376 ~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 419 (440)
.++-....+++.+.... ++..|..+..+|.-.|+.+.+.+-+..
T Consensus 173 L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl~~ 222 (291)
T PF10475_consen 173 LQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKLQM 222 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHHH
No 467
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=46.02 E-value=1.8e+02 Score=24.51 Aligned_cols=169 Identities=8% Similarity=-0.002 Sum_probs=106.7
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHc-CCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHH-
Q 047359 265 LCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCG-KGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQID- 342 (440)
Q Consensus 265 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~- 342 (440)
+.+....+.|+++-.+.+..+ +.+-..|.---..+.. ..++.+-++.+.++.+..++ |-..|..-=......|++.
T Consensus 53 ~~~~E~S~RAl~LT~d~i~lN-pAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npK-NYQvWHHRr~ive~l~d~s~ 130 (318)
T KOG0530|consen 53 IAKNEKSPRALQLTEDAIRLN-PANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPK-NYQVWHHRRVIVELLGDPSF 130 (318)
T ss_pred HhccccCHHHHHHHHHHHHhC-cccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHHhcCccc
Confidence 345678889999999988764 2222222211111111 24566777888888877655 6666665444445556666
Q ss_pred HHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHh-cc-----cHHHHHHH
Q 047359 343 KAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCH-LK-----ELRKAMKN 416 (440)
Q Consensus 343 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g-----~~~~a~~~ 416 (440)
.=+++.+.|....-+ +-+.|..--.++..-+.++.-+.+..++.+.+..+-.+|+.-...... .| ..+.=+.+
T Consensus 131 rELef~~~~l~~DaK-NYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~y 209 (318)
T KOG0530|consen 131 RELEFTKLMLDDDAK-NYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNY 209 (318)
T ss_pred chHHHHHHHHhcccc-chhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHH
Confidence 667888888875444 777887777778888889999999999999988877787753332222 22 22333444
Q ss_pred HHHHHHCCCCCCHHHHHHHhhh
Q 047359 417 HDEMLKMGHKPDEATYKQVISG 438 (440)
Q Consensus 417 ~~~m~~~~~~p~~~t~~~ll~a 438 (440)
..+++. +.|+..+-...|.|
T Consensus 210 t~~~I~--~vP~NeSaWnYL~G 229 (318)
T KOG0530|consen 210 TKDKIL--LVPNNESAWNYLKG 229 (318)
T ss_pred HHHHHH--hCCCCccHHHHHHH
Confidence 555555 56766554444444
No 468
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=45.96 E-value=47 Score=17.74 Aligned_cols=23 Identities=4% Similarity=-0.003 Sum_probs=16.5
Q ss_pred hHHHHHHHHHhcccHHHHHHHHH
Q 047359 396 SFVIVVSRLCHLKELRKAMKNHD 418 (440)
Q Consensus 396 ~~~~l~~~~~~~g~~~~a~~~~~ 418 (440)
.+..+...+-..|++++|..+++
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHH
Confidence 34566677778899999999944
No 469
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=45.66 E-value=1.2e+02 Score=23.49 Aligned_cols=41 Identities=15% Similarity=0.208 Sum_probs=19.1
Q ss_pred HHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 047359 229 ALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEH 269 (440)
Q Consensus 229 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 269 (440)
.+...++.-.|.++++.+.+.+..++..|.-..+..+.+.|
T Consensus 34 ~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 34 LMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred HHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 33333344445555555555554444444444444444444
No 470
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=45.07 E-value=2e+02 Score=24.63 Aligned_cols=84 Identities=8% Similarity=-0.043 Sum_probs=40.8
Q ss_pred cCChhhHHHHHHHHHhcCCCCcccccchHHHHHHHhh----cCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhh----
Q 047359 161 YEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSD----MGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSK---- 232 (440)
Q Consensus 161 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 232 (440)
.+++..+...+......+. ......+...|.. ..+...|.++|....+.|.. .....+...|..
T Consensus 54 ~~~~~~a~~~~~~a~~~~~-----~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~---~a~~~lg~~~~~G~gv 125 (292)
T COG0790 54 PPDYAKALKSYEKAAELGD-----AAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLA---EALFNLGLMYANGRGV 125 (292)
T ss_pred cccHHHHHHHHHHhhhcCC-----hHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccH---HHHHhHHHHHhcCCCc
Confidence 4555666666665554321 1222223333332 23466666666655554432 222333333333
Q ss_pred hccHHHHHHHHHHHHHcCCC
Q 047359 233 EGRVKEAIQIYHLISERGIT 252 (440)
Q Consensus 233 ~~~~~~a~~~~~~~~~~~~~ 252 (440)
..+..+|...|+..-+.|..
T Consensus 126 ~~d~~~A~~~~~~Aa~~g~~ 145 (292)
T COG0790 126 PLDLVKALKYYEKAAKLGNV 145 (292)
T ss_pred ccCHHHHHHHHHHHHHcCCh
Confidence 33666666666666666544
No 471
>PRK12798 chemotaxis protein; Reviewed
Probab=44.83 E-value=2.4e+02 Score=25.62 Aligned_cols=225 Identities=12% Similarity=-0.046 Sum_probs=117.7
Q ss_pred HHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHH--hcCChHHHHHHHhccc-----CCchhHHHHHHHH-
Q 047359 51 NALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILC--RSGKFEVVLGLLDSGI-----YSSVMYNLVIDFY- 122 (440)
Q Consensus 51 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~-----~~~~~~~~li~~~- 122 (440)
...+-....-|+++....++. .+..|+.. ..++.+.. -.|+..++.+.+..+. +....|-.|+.+-
T Consensus 85 ~Aa~iy~lSGGnP~vlr~L~~----~d~~~~~d--~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l 158 (421)
T PRK12798 85 DAALIYLLSGGNPATLRKLLA----RDKLGNFD--QRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNL 158 (421)
T ss_pred hHHHhhHhcCCCHHHHHHHHH----cCCCChhh--HHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHH
Confidence 344444556677665555443 33333322 22222222 3688888888888877 3444566666554
Q ss_pred HhcCChhHHHHHHHHHhcCCCCCCchh----hHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCcccccchHHHHHHHhhc
Q 047359 123 SKKGDFGAAFDRLNEMCNGRNLTPGFS----TYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDM 198 (440)
Q Consensus 123 ~~~~~~~~a~~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 198 (440)
....+..+|+++|+...- .-|... ....-+......|+.+++..+-.....+-...--....+..+...+.+.
T Consensus 159 ~~~~dP~~Al~~lD~aRL---laPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~ 235 (421)
T PRK12798 159 MVATDPATALKLLDQARL---LAPGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRL 235 (421)
T ss_pred hcccCHHHHHHHHHHHHH---hCCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhc
Confidence 445788889999988764 456543 3333444567788888777665555543211100011122222333333
Q ss_pred C---cHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHH-----HhcCC
Q 047359 199 G---KTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVL-----CKEHQ 270 (440)
Q Consensus 199 ~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~ 270 (440)
+ ..+.-..++..|. ..--...|..+...-.-.|+.+-|.-.-++........+ .-......| .-..+
T Consensus 236 ~d~~~~~~l~~~ls~~d---~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~~~--~~~~ra~LY~aaa~v~s~~ 310 (421)
T PRK12798 236 DDEIRDARLVEILSFMD---PERQRELYLRIARAALIDGKTELARFASERALKLADPDS--ADAARARLYRGAALVASDD 310 (421)
T ss_pred cccccHHHHHHHHHhcC---chhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhccCCC--cchHHHHHHHHHHccCccc
Confidence 3 2333333333332 222345777777777778888887777776665432111 111112222 23345
Q ss_pred hHHHHHHHHHHHHcCCCCC
Q 047359 271 PEEVCGLLRDVVERGYIPC 289 (440)
Q Consensus 271 ~~~a~~~~~~~~~~~~~~~ 289 (440)
++++.+.+..+......+.
T Consensus 311 ~~~al~~L~~I~~~~L~~~ 329 (421)
T PRK12798 311 AESALEELSQIDRDKLSER 329 (421)
T ss_pred HHHHHHHHhcCChhhCChh
Confidence 7777777776665554443
No 472
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=44.55 E-value=2.3e+02 Score=25.21 Aligned_cols=222 Identities=10% Similarity=-0.036 Sum_probs=101.5
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhcC-CCCcccccchHHHHHHHhhcCcHHHHHHHHHHHHh----cCCCCCHHhH-
Q 047359 150 TYSSILDGARRYEKTEVSDRIVGLMVEKK-LLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACD----EKIELQDDTC- 223 (440)
Q Consensus 150 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~- 223 (440)
+.+.+-.++.+.+.+....++..+.+..- ..+.........++..+.+.+++..+...++.-.. .+...++..+
T Consensus 104 lc~~l~~~~~~~~~p~~gi~ii~~av~k~~~~~~qlT~~H~~l~~~~L~ak~y~~~~p~ld~divei~~~n~h~~~k~fL 183 (422)
T KOG2582|consen 104 LCHDLTEAVVKKNKPLRGIRIIMQAVDKMQPSNGQLTSIHADLLQLCLEAKDYASVLPYLDDDIVEICKANPHLDPKYFL 183 (422)
T ss_pred HHHHHHHHHHhcCCccccchHHHHHHHHhccCccchhhhHHHHHHHHHHhhcccccCCccchhHHHHhccCCCCCHHHHH
Confidence 34455556666666666555554444321 11111123344466667777776665554443211 1111111111
Q ss_pred -HHHHH--HHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHH--------HhcCChHHHHHHHHHHHHcCCCCChhh
Q 047359 224 -GCMLK--ALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVL--------CKEHQPEEVCGLLRDVVERGYIPCAME 292 (440)
Q Consensus 224 -~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--------~~~~~~~~a~~~~~~~~~~~~~~~~~~ 292 (440)
..+-. .|...++++.|+.+|+...-. |....-...+.+| .-.|+.-..-+--.....+-.+|-..-
T Consensus 184 ~Y~yYgg~iciglk~fe~Al~~~e~~v~~---Pa~~vs~~hlEaYkkylLvsLI~~GK~~ql~k~ts~~~~r~~K~ms~p 260 (422)
T KOG2582|consen 184 LYLYYGGMICIGLKRFERALYLLEICVTT---PAMAVSHIHLEAYKKYLLVSLILTGKVFQLPKNTSQNAGRFFKPMSNP 260 (422)
T ss_pred HHHHhcceeeeccccHHHHHHHHHHHHhc---chhHHHHHHHHHHHHHHHHHhhhcCceeeccccchhhhHHhcccCCch
Confidence 11111 133567889998888877653 3222222222322 233433111111111111112233334
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHH----
Q 047359 293 LSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLD---- 368 (440)
Q Consensus 293 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~---- 368 (440)
|..++++|.+...- +.+.+..+-. ..+.+.++..-+...+..+.++.+..-..+|.+|--
T Consensus 261 Y~ef~~~Y~~~~~~-eLr~lVk~~~---------------~rF~kDnnt~l~k~av~sl~k~nI~rltktF~sLsL~dIA 324 (422)
T KOG2582|consen 261 YHEFLNVYLKDSST-ELRTLVKKHS---------------ERFTKDNNTGLAKQAVSSLYKKNIQRLTKTFLSLSLSDIA 324 (422)
T ss_pred HHHHHHHHhcCCcH-HHHHHHHHHH---------------HHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 66666666653322 1222221111 123456667777777777776655544556655422
Q ss_pred HHHhcCcHHHHHHHHHHHHHcC
Q 047359 369 GLFKDGRMEEAVRIFDYMKELK 390 (440)
Q Consensus 369 ~~~~~g~~~~a~~~~~~~~~~~ 390 (440)
..+..+..++|.+..-+|.+.|
T Consensus 325 ~~vQLa~~qevek~Ilqmie~~ 346 (422)
T KOG2582|consen 325 SRVQLASAQEVEKYILQMIEDG 346 (422)
T ss_pred HHHHhcchHHHHHHHHHHhccC
Confidence 2234566677776666665543
No 473
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=44.48 E-value=2.1e+02 Score=24.77 Aligned_cols=59 Identities=5% Similarity=-0.025 Sum_probs=43.4
Q ss_pred CCchhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCchhhHHHHHHHHHh----------cCChhhHHHHHHHH
Q 047359 110 YSSVMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDGARR----------YEKTEVSDRIVGLM 174 (440)
Q Consensus 110 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----------~~~~~~a~~~~~~~ 174 (440)
|.-.++..+.-.+.+.=.+..++.+++.+.. |..-|..|+..|+. .|++....++++.-
T Consensus 276 PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s------D~~rfd~Ll~iCcsmlil~Re~il~~DF~~nmkLLQ~y 344 (370)
T KOG4567|consen 276 PQFYAFRWITLLLSQEFPLPDVIRLWDSLLS------DPQRFDFLLYICCSMLILVRERILEGDFTVNMKLLQNY 344 (370)
T ss_pred ccchhHHHHHHHHhccCCchhHHHHHHHHhc------ChhhhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhcC
Confidence 7777888887788888899999999999876 33346666665543 47887777766544
No 474
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=44.06 E-value=1.1e+02 Score=21.31 Aligned_cols=50 Identities=12% Similarity=0.118 Sum_probs=21.4
Q ss_pred HHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 047359 229 ALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVER 284 (440)
Q Consensus 229 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 284 (440)
.+...|++++|..+.+.+ ..||...|.++.. .+.|..++...-+..+..+
T Consensus 48 SLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 344455555555544433 2344444433322 2344444444444444443
No 475
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=43.97 E-value=72 Score=22.61 Aligned_cols=48 Identities=17% Similarity=0.230 Sum_probs=33.6
Q ss_pred HHHHHHHccCCcchHHHHHHHHHhcCCccChHhHHHHHHHHHhccchh
Q 047359 17 LVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIR 64 (440)
Q Consensus 17 ~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 64 (440)
.++..+...+.+-.|.++++.+.+.+...+..|-...+..+...|-+.
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 356666666777888888888888776666666666666666666544
No 476
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=43.92 E-value=20 Score=31.05 Aligned_cols=88 Identities=16% Similarity=0.104 Sum_probs=39.6
Q ss_pred hhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHcCCCHHHHH
Q 047359 232 KEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCA-MELSRFVASQCGKGKWKEVE 310 (440)
Q Consensus 232 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~ 310 (440)
..|.++.|++.|...++.+. +....|..-.+++.+.+++..|++=+....+.+ ||. .-|-.--.+....|++++|.
T Consensus 126 n~G~~~~ai~~~t~ai~lnp-~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein--~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNP-PLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN--PDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred cCcchhhhhcccccccccCC-chhhhcccccceeeeccCCchhhhhhhhhhccC--cccccccchhhHHHHHhhchHHHH
Confidence 34555555555555554432 233344444445555555555555554444432 221 11222222233345555555
Q ss_pred HHHHHHHhcCCC
Q 047359 311 ELLSAVLDKGLL 322 (440)
Q Consensus 311 ~~~~~~~~~~~~ 322 (440)
..+....+.+..
T Consensus 203 ~dl~~a~kld~d 214 (377)
T KOG1308|consen 203 HDLALACKLDYD 214 (377)
T ss_pred HHHHHHHhcccc
Confidence 555555554443
No 477
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=43.90 E-value=4e+02 Score=27.79 Aligned_cols=25 Identities=20% Similarity=0.337 Sum_probs=11.6
Q ss_pred HHHHHHHHhcC--ChHHHHHHHHHHHH
Q 047359 259 YAFVNVLCKEH--QPEEVCGLLRDVVE 283 (440)
Q Consensus 259 ~~l~~~~~~~~--~~~~a~~~~~~~~~ 283 (440)
..++.+|.+.+ +.++|+..+..+.+
T Consensus 816 ~~IlTa~vkk~Pp~le~aL~~I~~l~~ 842 (928)
T PF04762_consen 816 QPILTAYVKKSPPDLEEALQLIKELRE 842 (928)
T ss_pred HHHHHHHHhcCchhHHHHHHHHHHHHh
Confidence 34444444444 44444444444443
No 478
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=43.45 E-value=6.9e+02 Score=30.41 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=13.7
Q ss_pred HHHHHHhhhccHHHHHHHHHHHHH
Q 047359 225 CMLKALSKEGRVKEAIQIYHLISE 248 (440)
Q Consensus 225 ~l~~~~~~~~~~~~a~~~~~~~~~ 248 (440)
.+++++.+.-...+|..++..+.+
T Consensus 2637 ~lL~~~QqivEl~Ea~~I~s~l~~ 2660 (3550)
T KOG0889|consen 2637 PLLQAFQQIVELQEAAQIYSDLND 2660 (3550)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc
Confidence 455555555556666666655544
No 479
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=43.44 E-value=98 Score=20.62 Aligned_cols=32 Identities=28% Similarity=0.362 Sum_probs=14.2
Q ss_pred cHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 047359 235 RVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQ 270 (440)
Q Consensus 235 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 270 (440)
+.+.+.++++.+..+|. .+|..+.+++...|.
T Consensus 45 r~~q~~~LLd~L~~RG~----~AF~~F~~aL~~~~~ 76 (84)
T cd08326 45 RRDQARQLLIDLETRGK----QAFPAFLSALRETGQ 76 (84)
T ss_pred HHHHHHHHHHHHHhcCH----HHHHHHHHHHHhcCc
Confidence 34444444444444432 234444444444443
No 480
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=43.14 E-value=1e+02 Score=20.66 Aligned_cols=43 Identities=16% Similarity=0.172 Sum_probs=29.6
Q ss_pred HHHHHHHhcCCccChHhHHHHHHHHHhccchhHHHHHHHHHHH
Q 047359 33 EVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVR 75 (440)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 75 (440)
++|+.....|+..|...|..++..+.-+=.++...++++.|..
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 6777777777777777777777666555556666666666643
No 481
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=42.99 E-value=1.7e+02 Score=23.29 Aligned_cols=54 Identities=13% Similarity=0.086 Sum_probs=28.2
Q ss_pred HHHHHhhhccHHHHHHHHHHHHHcCCC--------------CChhhHHHHHHHHHhcCChHHHHHHHH
Q 047359 226 MLKALSKEGRVKEAIQIYHLISERGIT--------------VRDSDYYAFVNVLCKEHQPEEVCGLLR 279 (440)
Q Consensus 226 l~~~~~~~~~~~~a~~~~~~~~~~~~~--------------~~~~~~~~l~~~~~~~~~~~~a~~~~~ 279 (440)
++-.|.+..++.+..++++.|.+..+. +.-...|.....+.++|..|.|..+++
T Consensus 138 ~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 138 LMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 344455555666666666655543221 122334555555666666666666555
No 482
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=42.59 E-value=81 Score=22.60 Aligned_cols=47 Identities=21% Similarity=0.207 Sum_probs=25.7
Q ss_pred HHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh
Q 047359 52 ALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSGKF 98 (440)
Q Consensus 52 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 98 (440)
.++..+...+..-.|.++++.+.+.+...+..|.-.-++.+.+.|-+
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli 58 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLI 58 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeE
Confidence 44455555555566666666666665555555555555556665543
No 483
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=42.39 E-value=2.2e+02 Score=24.37 Aligned_cols=217 Identities=16% Similarity=0.090 Sum_probs=0.0
Q ss_pred HHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHhHHH-------HHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 047359 191 VIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGC-------MLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVN 263 (440)
Q Consensus 191 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 263 (440)
+.+-..+.+++++|+..+.++...|+..+..+.+. +...|...|++..--+......+.-......-...++.
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Q ss_pred HHH-----hcCChHHHHHHHHHHHHcCCCCChhhHH-----HHHHHHHcCCCHHHHHHHHHHHH----hcCCCCchhhhH
Q 047359 264 VLC-----KEHQPEEVCGLLRDVVERGYIPCAMELS-----RFVASQCGKGKWKEVEELLSAVL----DKGLLLDSFCCS 329 (440)
Q Consensus 264 ~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~ 329 (440)
.+. ....++.-+.+.....+...+....... .++..+.+.|.+.+|+.+...+. +.+-+|+..+..
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vh 168 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVH 168 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehh
Q ss_pred HHHH-HHHcCCcHHHHHHHHHHHH----hccCCcCHHhHHHHHHH--HHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHH
Q 047359 330 SLME-YYCSNRQIDKAIALHIKIE----KLKGSLDVATYDVLLDG--LFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVS 402 (440)
Q Consensus 330 ~l~~-~~~~~~~~~~a~~~~~~~~----~~~~~p~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 402 (440)
.+=. +|-...+..++..-+.... ..-++|....---|+.+ .+...++..|...|-+..+
T Consensus 169 llESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~E-------------- 234 (421)
T COG5159 169 LLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALE-------------- 234 (421)
T ss_pred hhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHh--------------
Q ss_pred HHHhcccHHHHHHHHHHHH
Q 047359 403 RLCHLKELRKAMKNHDEML 421 (440)
Q Consensus 403 ~~~~~g~~~~a~~~~~~m~ 421 (440)
+|-......+|...++-|+
T Consensus 235 gft~l~~d~kAc~sLkYml 253 (421)
T COG5159 235 GFTLLKMDVKACVSLKYML 253 (421)
T ss_pred ccccccchHHHHHHHHHHH
No 484
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=42.03 E-value=53 Score=28.08 Aligned_cols=59 Identities=12% Similarity=0.004 Sum_probs=33.9
Q ss_pred HcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchh
Q 047359 336 CSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSS 395 (440)
Q Consensus 336 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 395 (440)
.+.|+.++|..+|+......+. ++....-+........+.-+|-+.+-++..-.|.+..
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~-~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nse 185 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPT-NPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSE 185 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCC-CHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchH
Confidence 4677788888888777765332 3444444444444455566666666665555444433
No 485
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=41.38 E-value=3e+02 Score=25.70 Aligned_cols=106 Identities=12% Similarity=-0.001 Sum_probs=55.2
Q ss_pred HHhcCChHHHHHHHHHHH---HcCCCCC-----hhhHHHHHHHHHcCCCHHHHHHHHHHHHh-------cCCCCch----
Q 047359 265 LCKEHQPEEVCGLLRDVV---ERGYIPC-----AMELSRFVASQCGKGKWKEVEELLSAVLD-------KGLLLDS---- 325 (440)
Q Consensus 265 ~~~~~~~~~a~~~~~~~~---~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~---- 325 (440)
+.-.|++.+|.+++...- ..|...+ -..+|.+.-.+.+.|.+..+..+|.+..+ .|++|..
T Consensus 250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tl 329 (696)
T KOG2471|consen 250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTL 329 (696)
T ss_pred HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceeh
Confidence 345577777776665432 1121111 11223443334445555555555555542 3433321
Q ss_pred -------hhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHh
Q 047359 326 -------FCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFK 372 (440)
Q Consensus 326 -------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 372 (440)
.+||.=+ .|...|++-.|.+.|.+..+. ...++..|-.|..+|..
T Consensus 330 s~nks~eilYNcG~-~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 330 SQNKSMEILYNCGL-LYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred hcccchhhHHhhhH-HHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 1233222 456677788888877777654 44577777777777753
No 486
>PRK13342 recombination factor protein RarA; Reviewed
Probab=40.71 E-value=2.9e+02 Score=25.33 Aligned_cols=33 Identities=6% Similarity=-0.032 Sum_probs=16.9
Q ss_pred CCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHH
Q 047359 338 NRQIDKAIALHIKIEKLKGSLDVATYDVLLDGL 370 (440)
Q Consensus 338 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 370 (440)
.++.+.|+..+.+|.+.|..|....-..++.++
T Consensus 243 gsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ 275 (413)
T PRK13342 243 GSDPDAALYYLARMLEAGEDPLFIARRLVIIAS 275 (413)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 355666666666666655555443333333333
No 487
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=40.55 E-value=2.8e+02 Score=25.10 Aligned_cols=53 Identities=4% Similarity=-0.042 Sum_probs=24.6
Q ss_pred HHccCCcchHHHHHHHHHhcCCccChH--hHHHHHHHHH--hccchhHHHHHHHHHHH
Q 047359 22 YSHKGLFMDGLEVYRMMRVYGFVPAVS--ACNALLDALY--RQNEIRLASCLYGAMVR 75 (440)
Q Consensus 22 ~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~ll~~~~--~~~~~~~a~~~~~~~~~ 75 (440)
+...+++..|.++|+.+.++ ++++.. .+..+..+|. ..-++++|.+.++....
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 33555666666666666554 333332 2233333332 23445555555555443
No 488
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=40.50 E-value=2.4e+02 Score=24.22 Aligned_cols=171 Identities=9% Similarity=-0.052 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHcC--------CCCChhhHHHHHH-HHHhcCChHHHHHHHhccc---CCchhHHHHHHHHHhcCChhHH
Q 047359 64 RLASCLYGAMVRDG--------VSPNKFTWSLVAQ-ILCRSGKFEVVLGLLDSGI---YSSVMYNLVIDFYSKKGDFGAA 131 (440)
Q Consensus 64 ~~a~~~~~~~~~~~--------~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a 131 (440)
+..-.++.-+.+.| ++-|..-++.|++ --.+...++++++-.+.-. .-..++..+...|++.++.+.+
T Consensus 55 ~~maplYkyL~E~~n~kt~a~~ikfD~~~~n~l~kkneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng 134 (412)
T COG5187 55 KCMAPLYKYLAEKGNPKTSASVIKFDRGRMNTLLKKNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNG 134 (412)
T ss_pred hhhhHHHHHHHhccCCcccchheehhhHHHHHHHHhhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhH
Q ss_pred HHHHHHHhc---CCCCCCchh-hHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCcccccchHHHHHHHhhcCcHHHHHHH
Q 047359 132 FDRLNEMCN---GRNLTPGFS-TYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMI 207 (440)
Q Consensus 132 ~~~~~~~~~---~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 207 (440)
.+...+..+ ..|.+.|.. +-..|.-.|....-.++-++..+.+.+.|..-++-...-..-.-.+...+++.+|-.+
T Consensus 135 ~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~L 214 (412)
T COG5187 135 FEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAIL 214 (412)
T ss_pred HHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHH
Q ss_pred HHHHHhcCCCCCHHhHHHHHHHHhhhc
Q 047359 208 FKRACDEKIELQDDTCGCMLKALSKEG 234 (440)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~l~~~~~~~~ 234 (440)
+......--......|........-.|
T Consensus 215 l~d~l~tF~S~El~sY~~~vrYa~~~G 241 (412)
T COG5187 215 LSDILPTFESSELISYSRAVRYAIFCG 241 (412)
T ss_pred HHHHhccccccccccHHHHHHHHHHhh
No 489
>PRK09462 fur ferric uptake regulator; Provisional
Probab=40.47 E-value=1.6e+02 Score=22.18 Aligned_cols=62 Identities=8% Similarity=0.087 Sum_probs=38.0
Q ss_pred HHHHHcCCCCChhhHHHHHHHHHcC-CCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcH
Q 047359 279 RDVVERGYIPCAMELSRFVASQCGK-GKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQI 341 (440)
Q Consensus 279 ~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 341 (440)
+.+.+.|++++..- ..++..+... +..-.|.++++.+.+.++..+..|...-+..+...|-.
T Consensus 6 ~~l~~~glr~T~qR-~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 6 TALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 34455666655433 2344444443 45778888888888877666666665566666666644
No 490
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=40.34 E-value=72 Score=22.84 Aligned_cols=48 Identities=19% Similarity=0.198 Sum_probs=32.8
Q ss_pred HHHHHHHHccCCcchHHHHHHHHHhcCCccChHhHHHHHHHHHhccch
Q 047359 16 SLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEI 63 (440)
Q Consensus 16 ~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 63 (440)
..++..+...+.+-.|.++++.+.+.+...+..|.-.-+..+...|-+
T Consensus 11 ~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli 58 (120)
T PF01475_consen 11 LAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLI 58 (120)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeE
Confidence 356777777777888999999998877666666655556666666543
No 491
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=40.01 E-value=1.5e+02 Score=21.68 Aligned_cols=44 Identities=14% Similarity=0.132 Sum_probs=26.1
Q ss_pred hhHHHHHHHHHhcCCCCcccccchHHHHHHHhhcCcHHHHHHHHH
Q 047359 165 EVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFK 209 (440)
Q Consensus 165 ~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 209 (440)
+...++|..|...++-... ...|......+-..|++.+|.++|+
T Consensus 80 ~dp~~if~~L~~~~IG~~~-AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKL-ALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcchhh-HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4456677777776654442 3445555566666666666666654
No 492
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=39.81 E-value=1.4e+02 Score=21.24 Aligned_cols=31 Identities=19% Similarity=0.352 Sum_probs=17.6
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHHcCCCchhh
Q 047359 366 LLDGLFKDGRMEEAVRIFDYMKELKVVSSSS 396 (440)
Q Consensus 366 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 396 (440)
+++.+.+|...++|+++++-|.+.|--+...
T Consensus 67 ViD~lrRC~T~EEALEVInylek~GEIt~e~ 97 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRGEITPEE 97 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhCCCCHHH
Confidence 3444556666666666666666665444433
No 493
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.77 E-value=3.5e+02 Score=25.92 Aligned_cols=175 Identities=11% Similarity=0.032 Sum_probs=0.0
Q ss_pred HHhcCChHHHHHHHHHHHHc-----------CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHH---hcCCCCc------
Q 047359 265 LCKEHQPEEVCGLLRDVVER-----------GYIPCAMELSRFVASQCGKGKWKEVEELLSAVL---DKGLLLD------ 324 (440)
Q Consensus 265 ~~~~~~~~~a~~~~~~~~~~-----------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~------ 324 (440)
+-.+..++++..-|...... ..+-...+.-.+...+..+|+.+.|..++++.+ +.-..|.
T Consensus 248 ~~hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg 327 (665)
T KOG2422|consen 248 FEHSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSG 327 (665)
T ss_pred eecchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccc
Q ss_pred --------------hhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHH-hcCcHHHHHHHHHHHHHc
Q 047359 325 --------------SFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLF-KDGRMEEAVRIFDYMKEL 389 (440)
Q Consensus 325 --------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~ 389 (440)
.-+.-.-+....+.|.+..|.++.+-+.+..+.-|+.....+|+.|+ +..+++-.+++++.....
T Consensus 328 ~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~ 407 (665)
T KOG2422|consen 328 NCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENM 407 (665)
T ss_pred cccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Q ss_pred CCC---chhhHHHHHHHHHhcccHHHHHHHHHHHHHCCCCCCHHHHHHHhhhc
Q 047359 390 KVV---SSSSFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDEATYKQVISGF 439 (440)
Q Consensus 390 ~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~a~ 439 (440)
+.- +...|...+..+.-.++-+.+.+........-+.--....+.|+..|
T Consensus 408 n~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~vl~eLld~~ 460 (665)
T KOG2422|consen 408 NKLSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALKHHPLVLSELLDEL 460 (665)
T ss_pred ccHhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcHHHHHHHHhc
No 494
>PHA00425 DNA packaging protein, small subunit
Probab=39.32 E-value=1.1e+02 Score=19.92 Aligned_cols=32 Identities=16% Similarity=0.118 Sum_probs=16.6
Q ss_pred cHHHHHHHHHHHHHcCCCchhhHHHHHHHHHh
Q 047359 375 RMEEAVRIFDYMKELKVVSSSSFVIVVSRLCH 406 (440)
Q Consensus 375 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 406 (440)
+.+.|...+..++...-.+|..|+++...+.+
T Consensus 14 DTE~a~~mL~DL~ddekRtPQLYnAIgKlL~R 45 (88)
T PHA00425 14 DTEMAQRMLADLKDDEKRTPQLYNAIGKLLDR 45 (88)
T ss_pred hHHHHHHHHHHhcCccccChHHHHHHHHHHHH
Confidence 34455555555554443456666665555443
No 495
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=38.87 E-value=2.3e+02 Score=23.60 Aligned_cols=13 Identities=15% Similarity=0.041 Sum_probs=6.2
Q ss_pred HHhccCCcCHHhH
Q 047359 351 IEKLKGSLDVATY 363 (440)
Q Consensus 351 ~~~~~~~p~~~~~ 363 (440)
|.+--+.|...||
T Consensus 221 ~~~pvi~psgIty 233 (284)
T KOG4642|consen 221 MREPVITPSGITY 233 (284)
T ss_pred hcCCccCccccch
Confidence 3333345555555
No 496
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=37.81 E-value=3e+02 Score=24.68 Aligned_cols=159 Identities=9% Similarity=-0.008 Sum_probs=88.9
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHH--
Q 047359 254 RDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSL-- 331 (440)
Q Consensus 254 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-- 331 (440)
...++..+-..+...|+...|.+++++..-.--..-...+..+... ...|... ......-|...|.++
T Consensus 39 HidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~-~~~g~~r---------L~~~~~eNR~fflal~r 108 (360)
T PF04910_consen 39 HIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSN-LTSGNCR---------LDYRRPENRQFFLALFR 108 (360)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcc-cccCccc---------cCCccccchHHHHHHHH
Confidence 4556666667777788887777777776421000000001000000 0001000 000011144444443
Q ss_pred -HHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHH-hcCcHHHHHHHHHHHHHcCC-----CchhhHHHHHHHH
Q 047359 332 -MEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLF-KDGRMEEAVRIFDYMKELKV-----VSSSSFVIVVSRL 404 (440)
Q Consensus 332 -~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~l~~~~ 404 (440)
+..+.+.|.+..|.++.+-+...++.-|+.....+|+.|+ +.++++--+++.+....... .-|..-....-++
T Consensus 109 ~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~ 188 (360)
T PF04910_consen 109 YIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAY 188 (360)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHH
Confidence 4567899999999999999998766656777777777765 78888888888887655211 1123333444455
Q ss_pred HhcccH---------------HHHHHHHHHHHH
Q 047359 405 CHLKEL---------------RKAMKNHDEMLK 422 (440)
Q Consensus 405 ~~~g~~---------------~~a~~~~~~m~~ 422 (440)
...++. ++|.+.+.+...
T Consensus 189 ~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~ 221 (360)
T PF04910_consen 189 FRLEKEESSQSSAQSGRSENSESADEALQKAIL 221 (360)
T ss_pred HHhcCccccccccccccccchhHHHHHHHHHHH
Confidence 555555 677777766543
No 497
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=37.18 E-value=2.6e+02 Score=23.69 Aligned_cols=58 Identities=10% Similarity=0.080 Sum_probs=29.6
Q ss_pred HHHHHHhhhccHHHHHHHHHHHHHcCCC-----------CChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 047359 225 CMLKALSKEGRVKEAIQIYHLISERGIT-----------VRDSDYYAFVNVLCKEHQPEEVCGLLRDVV 282 (440)
Q Consensus 225 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 282 (440)
.+...|...+.+....++++++..+--. --...|..=++.|....+-.+...+++...
T Consensus 150 KLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqal 218 (440)
T KOG1464|consen 150 KLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQAL 218 (440)
T ss_pred hHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHH
Confidence 3455555556666666666555432100 012345555566666555555555665544
No 498
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=37.14 E-value=2.4e+02 Score=23.38 Aligned_cols=137 Identities=12% Similarity=0.159 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCcccccchHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHhHHHHHH
Q 047359 149 STYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLK 228 (440)
Q Consensus 149 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 228 (440)
......+..|.+.-++..|-...+++.+ +.--...+--|.+..+.+--.++.+-....++.-+..-...++
T Consensus 131 QAlRRtMEiyS~ttRFalaCN~s~KIiE--------PIQSRCAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii- 201 (333)
T KOG0991|consen 131 QALRRTMEIYSNTTRFALACNQSEKIIE--------PIQSRCAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII- 201 (333)
T ss_pred HHHHHHHHHHcccchhhhhhcchhhhhh--------hHHhhhHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh-
Q ss_pred HHhhhccHHHHHHHHHHHHHc------------CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHH
Q 047359 229 ALSKEGRVKEAIQIYHLISER------------GITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRF 296 (440)
Q Consensus 229 ~~~~~~~~~~a~~~~~~~~~~------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 296 (440)
+...||..+|+..++.-... --.|.+.....++..|.+ +++++|.+++.++-+.|+.|....-+.+
T Consensus 202 -fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~~-~~~~~A~~il~~lw~lgysp~Dii~~~F 279 (333)
T KOG0991|consen 202 -FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACLK-RNIDEALKILAELWKLGYSPEDIITTLF 279 (333)
T ss_pred -hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHHh-ccHHHHHHHHHHHHHcCCCHHHHHHHHH
No 499
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=36.98 E-value=5e+02 Score=26.98 Aligned_cols=247 Identities=11% Similarity=-0.059 Sum_probs=139.4
Q ss_pred ccChHhHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHH-hccc-CCchhHHHHHHH
Q 047359 44 VPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSGKFEVVLGLL-DSGI-YSSVMYNLVIDF 121 (440)
Q Consensus 44 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~-~~~~-~~~~~~~~li~~ 121 (440)
.++...-...+..+.+.+..+ +...+..+.+ .++...-...+.++.+.+........+ ..+. ++..+-...+..
T Consensus 632 D~d~~VR~~Av~~L~~~~~~~-~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~~d~~VR~~A~~a 707 (897)
T PRK13800 632 DPDPGVRRTAVAVLTETTPPG-FGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLGSPDPVVRAAALDV 707 (897)
T ss_pred CCCHHHHHHHHHHHhhhcchh-HHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhcCCCHHHHHHHHHH
Confidence 367777777777887777644 5555555554 345555556666665553321111222 2222 566666666666
Q ss_pred HHhcCChhHHHHHHHHHhcCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCcccccchHHHHHHHhhcCcH
Q 047359 122 YSKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKT 201 (440)
Q Consensus 122 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 201 (440)
+...+..+ ...+...+.. +|...-...+.++.+.+..+. + ..+. ..++ ...-...+.++...+..
T Consensus 708 L~~~~~~~-~~~l~~~L~D-----~d~~VR~~Av~aL~~~~~~~~---l-~~~l---~D~~--~~VR~~aa~aL~~~~~~ 772 (897)
T PRK13800 708 LRALRAGD-AALFAAALGD-----PDHRVRIEAVRALVSVDDVES---V-AGAA---TDEN--REVRIAVAKGLATLGAG 772 (897)
T ss_pred HHhhccCC-HHHHHHHhcC-----CCHHHHHHHHHHHhcccCcHH---H-HHHh---cCCC--HHHHHHHHHHHHHhccc
Confidence 66544222 2233333322 555555666777666554332 2 2222 2234 55556667777777654
Q ss_pred HH-HHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 047359 202 YA-AEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRD 280 (440)
Q Consensus 202 ~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 280 (440)
+. +...+..+.+ .+|...-...+.++.+.|....+...+..+.+. ++...-...+.++...+.. ++...+..
T Consensus 773 ~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d---~d~~VR~~Aa~aL~~l~~~-~a~~~L~~ 845 (897)
T PRK13800 773 GAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRA---SAWQVRQGAARALAGAAAD-VAVPALVE 845 (897)
T ss_pred cchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcC---CChHHHHHHHHHHHhcccc-chHHHHHH
Confidence 43 3444545543 356778888888888888766554445555543 3555666677788777654 45555555
Q ss_pred HHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 047359 281 VVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDK 319 (440)
Q Consensus 281 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 319 (440)
+.+ .|+...-...+.++.+.+....+...+....+.
T Consensus 846 ~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~D 881 (897)
T PRK13800 846 ALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALTD 881 (897)
T ss_pred Hhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHhC
Confidence 554 356666666677776654345666677666653
No 500
>PF10963 DUF2765: Protein of unknown function (DUF2765); InterPro: IPR024406 This family of proteins with no known function is found in phages and suspected prophages.
Probab=36.63 E-value=1.3e+02 Score=20.04 Aligned_cols=33 Identities=3% Similarity=-0.082 Sum_probs=24.2
Q ss_pred CCCChHhHHHHHHHHHccCCcchHHHHHHHHHh
Q 047359 8 RDSQSDALSLVLDCYSHKGLFMDGLEVYRMMRV 40 (440)
Q Consensus 8 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 40 (440)
+.|+...||.++....+.+...-|..++.+...
T Consensus 12 F~pt~~~yn~yiN~~~~~nkVaPa~n~L~r~V~ 44 (83)
T PF10963_consen 12 FNPTPTAYNKYINEMAMDNKVAPAHNYLMRIVD 44 (83)
T ss_pred eccCHHHHHHHHHHhccCCCchHHHHHHHHHcC
Confidence 568888888888888777777777666666553
Done!