Query 047359
Match_columns 440
No_of_seqs 770 out of 1591
Neff 12.0
Searched_HMMs 29240
Date Mon Mar 25 18:09:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047359.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047359hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 7.4E-40 2.5E-44 310.0 48.3 415 9-436 81-591 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.3E-37 4.3E-42 294.7 37.3 401 24-439 65-526 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 5E-31 1.7E-35 235.7 43.3 377 19-408 6-387 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 3.4E-30 1.2E-34 230.3 43.6 362 54-429 6-372 (388)
5 4g26_A Pentatricopeptide repea 100.0 2.9E-32 1E-36 247.3 23.5 205 167-372 9-222 (501)
6 4g26_A Pentatricopeptide repea 100.0 8.5E-32 2.9E-36 244.3 23.5 206 203-408 8-224 (501)
7 2gw1_A Mitochondrial precursor 100.0 1.2E-26 3.9E-31 215.5 39.8 411 12-433 6-486 (514)
8 3fp2_A TPR repeat-containing p 100.0 1.7E-25 5.7E-30 208.9 40.4 407 12-429 25-495 (537)
9 2y4t_A DNAJ homolog subfamily 100.0 8.3E-25 2.8E-29 199.5 38.0 310 45-367 24-370 (450)
10 2y4t_A DNAJ homolog subfamily 99.9 1.3E-24 4.5E-29 198.2 34.9 345 66-422 11-409 (450)
11 2gw1_A Mitochondrial precursor 99.9 5.7E-24 1.9E-28 197.4 36.7 382 9-400 36-489 (514)
12 3ieg_A DNAJ homolog subfamily 99.9 1.6E-21 5.4E-26 172.1 36.9 304 115-430 6-340 (359)
13 3fp2_A TPR repeat-containing p 99.9 2.3E-21 7.8E-26 180.9 39.3 371 9-396 56-498 (537)
14 3ieg_A DNAJ homolog subfamily 99.9 3.1E-21 1.1E-25 170.2 37.2 329 46-408 2-354 (359)
15 2ooe_A Cleavage stimulation fa 99.9 1.2E-19 4.3E-24 168.4 42.1 404 9-422 10-491 (530)
16 3hym_B Cell division cycle pro 99.9 1.2E-20 4E-25 164.6 32.7 291 110-410 20-321 (330)
17 3hym_B Cell division cycle pro 99.9 2.4E-20 8.3E-25 162.5 32.3 277 144-429 18-303 (330)
18 2xm6_A Protein corresponding t 99.9 1.4E-18 4.8E-23 159.8 44.3 349 12-390 39-433 (490)
19 2xm6_A Protein corresponding t 99.9 5.3E-18 1.8E-22 155.9 46.2 364 29-424 24-433 (490)
20 1fch_A Peroxisomal targeting s 99.9 7.1E-21 2.4E-25 168.6 26.0 297 95-420 38-356 (368)
21 2ooe_A Cleavage stimulation fa 99.9 1.4E-18 4.9E-23 161.3 41.2 380 35-423 2-454 (530)
22 1fch_A Peroxisomal targeting s 99.9 1E-19 3.4E-24 161.2 27.1 304 56-387 34-357 (368)
23 4g1t_A Interferon-induced prot 99.9 1E-18 3.5E-23 160.2 33.7 368 45-432 49-469 (472)
24 4eqf_A PEX5-related protein; a 99.9 2.1E-19 7.1E-24 159.0 25.3 264 150-419 67-352 (365)
25 1b89_A Protein (clathrin heavy 99.9 8E-20 2.8E-24 158.4 21.4 280 24-347 15-304 (449)
26 3cv0_A Peroxisome targeting si 99.9 3.3E-19 1.1E-23 155.1 25.2 264 150-421 23-313 (327)
27 4eqf_A PEX5-related protein; a 99.9 1.8E-19 6.1E-24 159.4 23.5 267 111-385 64-352 (365)
28 3mkr_A Coatomer subunit epsilo 99.8 1.2E-18 4.1E-23 147.9 25.6 258 120-396 7-271 (291)
29 4g1t_A Interferon-induced prot 99.8 1.4E-17 4.7E-22 152.7 33.9 371 9-399 48-469 (472)
30 3cv0_A Peroxisome targeting si 99.8 3.4E-18 1.2E-22 148.7 26.5 264 115-388 24-314 (327)
31 3mkr_A Coatomer subunit epsilo 99.8 1.1E-17 3.6E-22 142.1 27.8 256 158-430 9-269 (291)
32 1b89_A Protein (clathrin heavy 99.8 2.2E-17 7.7E-22 143.2 29.0 362 10-417 30-411 (449)
33 1xi4_A Clathrin heavy chain; a 99.8 3.7E-16 1.3E-20 151.2 38.1 354 11-419 984-1341(1630)
34 3uq3_A Heat shock protein STI1 99.8 3.2E-17 1.1E-21 137.3 25.0 240 185-437 5-254 (258)
35 1xi4_A Clathrin heavy chain; a 99.8 5.2E-15 1.8E-19 143.4 38.9 350 18-418 1055-1440(1630)
36 3uq3_A Heat shock protein STI1 99.8 1.8E-16 6.2E-21 132.7 24.5 225 150-390 7-237 (258)
37 2pl2_A Hypothetical conserved 99.8 1E-16 3.5E-21 130.1 21.6 198 219-421 4-212 (217)
38 3spa_A Mtrpol, DNA-directed RN 99.8 1.5E-18 5.3E-23 162.5 12.1 116 185-300 127-246 (1134)
39 3e4b_A ALGK; tetratricopeptide 99.8 4.5E-16 1.5E-20 140.9 25.9 376 18-422 9-420 (452)
40 3spa_A Mtrpol, DNA-directed RN 99.8 1.6E-18 5.5E-23 162.4 9.2 151 219-374 126-286 (1134)
41 3u4t_A TPR repeat-containing p 99.7 2.5E-15 8.7E-20 126.8 25.9 248 152-405 7-266 (272)
42 2ho1_A Type 4 fimbrial biogene 99.7 2.2E-15 7.4E-20 125.7 25.0 213 220-437 37-250 (252)
43 3u4t_A TPR repeat-containing p 99.7 2.2E-15 7.6E-20 127.2 25.0 246 185-436 3-261 (272)
44 2vq2_A PILW, putative fimbrial 99.7 4E-15 1.4E-19 121.6 25.8 213 220-437 8-223 (225)
45 2h6f_A Protein farnesyltransfe 99.7 1.8E-15 6.3E-20 132.6 24.9 227 188-420 100-344 (382)
46 3e4b_A ALGK; tetratricopeptide 99.7 5.4E-15 1.9E-19 133.8 28.1 342 53-425 9-389 (452)
47 2pl2_A Hypothetical conserved 99.7 1.5E-15 5.2E-20 123.2 21.7 114 269-386 98-211 (217)
48 1xnf_A Lipoprotein NLPI; TPR, 99.7 1.4E-15 4.7E-20 128.6 22.2 247 162-417 19-269 (275)
49 2h6f_A Protein farnesyltransfe 99.7 3.6E-15 1.2E-19 130.8 25.3 249 149-406 98-365 (382)
50 2q7f_A YRRB protein; TPR, prot 99.7 1.3E-15 4.6E-20 126.2 20.6 197 222-422 25-221 (243)
51 4e6h_A MRNA 3'-END-processing 99.7 6.3E-13 2.2E-17 124.4 40.3 422 9-437 63-582 (679)
52 2ho1_A Type 4 fimbrial biogene 99.7 5.9E-15 2E-19 123.0 24.0 209 185-397 37-246 (252)
53 2q7f_A YRRB protein; TPR, prot 99.7 1.9E-15 6.4E-20 125.3 20.1 214 185-403 23-236 (243)
54 2vq2_A PILW, putative fimbrial 99.7 2.2E-14 7.4E-19 117.2 26.3 211 185-398 8-220 (225)
55 1ouv_A Conserved hypothetical 99.7 6.2E-14 2.1E-18 118.3 29.4 222 185-423 6-251 (273)
56 1xnf_A Lipoprotein NLPI; TPR, 99.7 4.1E-15 1.4E-19 125.7 20.2 248 124-383 17-269 (275)
57 1ouv_A Conserved hypothetical 99.7 1.1E-13 3.9E-18 116.7 28.7 226 147-392 5-254 (273)
58 3vtx_A MAMA; tetratricopeptide 99.7 3.3E-14 1.1E-18 112.3 21.7 174 254-432 4-177 (184)
59 4e6h_A MRNA 3'-END-processing 99.7 4.1E-12 1.4E-16 119.0 38.8 392 27-424 47-534 (679)
60 3sf4_A G-protein-signaling mod 99.7 1.4E-14 4.9E-19 129.8 21.7 292 115-410 12-363 (406)
61 4a1s_A PINS, partner of inscut 99.7 5.5E-15 1.9E-19 132.8 18.4 273 115-422 51-371 (411)
62 3sf4_A G-protein-signaling mod 99.6 2.5E-14 8.6E-19 128.2 20.7 275 146-422 7-335 (406)
63 4abn_A Tetratricopeptide repea 99.6 5.1E-14 1.7E-18 128.2 21.6 214 201-419 84-317 (474)
64 4a1s_A PINS, partner of inscut 99.6 4.2E-14 1.4E-18 127.0 20.4 277 83-390 49-373 (411)
65 3ro2_A PINS homolog, G-protein 99.6 4.1E-14 1.4E-18 123.2 19.7 277 115-422 8-331 (338)
66 2ond_A Cleavage stimulation fa 99.6 1.1E-12 3.7E-17 112.6 27.8 221 165-392 33-273 (308)
67 3ulq_A Response regulator aspa 99.6 2.4E-13 8E-18 120.8 23.6 231 191-422 109-367 (383)
68 3ro2_A PINS homolog, G-protein 99.6 9.2E-14 3.2E-18 120.9 20.4 277 83-390 6-333 (338)
69 3vtx_A MAMA; tetratricopeptide 99.6 6.1E-13 2.1E-17 104.9 21.9 170 219-392 4-173 (184)
70 2ond_A Cleavage stimulation fa 99.6 2.4E-12 8.3E-17 110.5 27.0 181 237-422 81-269 (308)
71 3nf1_A KLC 1, kinesin light ch 99.6 2.8E-14 9.6E-19 122.9 14.8 201 222-422 71-306 (311)
72 3ulq_A Response regulator aspa 99.6 2.8E-13 9.6E-18 120.3 21.3 232 155-389 110-368 (383)
73 4i17_A Hypothetical protein; T 99.5 2.3E-12 8E-17 105.4 20.8 206 218-436 5-220 (228)
74 4abn_A Tetratricopeptide repea 99.5 9.9E-13 3.4E-17 119.8 19.9 195 185-384 102-316 (474)
75 3q15_A PSP28, response regulat 99.5 7.1E-12 2.4E-16 111.0 25.0 230 190-422 106-364 (378)
76 3nf1_A KLC 1, kinesin light ch 99.5 1.6E-13 5.5E-18 118.1 13.0 238 150-389 29-307 (311)
77 3q15_A PSP28, response regulat 99.5 2.8E-11 9.6E-16 107.2 27.5 237 118-388 107-364 (378)
78 3as5_A MAMA; tetratricopeptide 99.5 8E-13 2.7E-17 104.2 15.3 163 257-422 10-172 (186)
79 4gyw_A UDP-N-acetylglucosamine 99.5 2.6E-12 8.8E-17 121.7 20.3 165 255-422 9-173 (723)
80 1hz4_A MALT regulatory protein 99.5 3.7E-11 1.3E-15 106.2 26.2 301 115-423 17-349 (373)
81 1hz4_A MALT regulatory protein 99.5 1.1E-10 3.8E-15 103.1 28.4 299 85-392 17-352 (373)
82 4i17_A Hypothetical protein; T 99.5 3E-11 1E-15 98.8 22.1 206 185-402 7-222 (228)
83 3as5_A MAMA; tetratricopeptide 99.4 1.4E-11 4.8E-16 97.0 18.3 166 223-392 11-176 (186)
84 4gyw_A UDP-N-acetylglucosamine 99.4 1.7E-11 6E-16 116.1 19.7 164 185-352 9-172 (723)
85 3edt_B KLC 2, kinesin light ch 99.4 1.3E-11 4.4E-16 104.4 16.2 227 196-422 12-280 (283)
86 1qqe_A Vesicular transport pro 99.4 1.1E-10 3.7E-15 99.2 20.4 213 200-429 32-273 (292)
87 3mv2_B Coatomer subunit epsilo 99.4 3.6E-10 1.2E-14 94.1 22.1 249 120-395 21-288 (310)
88 3edt_B KLC 2, kinesin light ch 99.3 3.1E-11 1.1E-15 102.1 15.9 230 159-389 12-281 (283)
89 2uy1_A Cleavage stimulation fa 99.3 3.1E-09 1.1E-13 96.7 29.6 205 201-422 195-412 (493)
90 3mv2_B Coatomer subunit epsilo 99.3 3E-09 1E-13 88.6 26.1 60 189-248 104-164 (310)
91 2fo7_A Synthetic consensus TPR 99.3 1.5E-10 5E-15 85.7 16.1 128 293-422 4-131 (136)
92 3qky_A Outer membrane assembly 99.3 4.2E-10 1.4E-14 94.0 19.9 207 185-411 15-249 (261)
93 3urz_A Uncharacterized protein 99.3 5.9E-10 2E-14 89.4 18.9 135 295-435 59-196 (208)
94 3dra_A Protein farnesyltransfe 99.3 7.3E-09 2.5E-13 87.2 25.9 218 165-422 50-286 (306)
95 3qky_A Outer membrane assembly 99.3 7.2E-10 2.5E-14 92.5 19.8 191 219-430 14-229 (261)
96 3dra_A Protein farnesyltransfe 99.3 1.6E-08 5.6E-13 85.1 27.1 242 123-402 43-301 (306)
97 2pzi_A Probable serine/threoni 99.2 2.1E-10 7E-15 109.3 17.5 174 231-409 402-583 (681)
98 4ga2_A E3 SUMO-protein ligase 99.2 5.9E-11 2E-15 89.7 10.4 138 268-408 10-148 (150)
99 1qqe_A Vesicular transport pro 99.2 4.6E-10 1.6E-14 95.3 16.6 200 192-391 44-271 (292)
100 2uy1_A Cleavage stimulation fa 99.2 1E-08 3.4E-13 93.3 25.4 340 24-420 6-380 (493)
101 2yhc_A BAMD, UPF0169 lipoprote 99.2 4.1E-09 1.4E-13 85.7 20.7 184 219-423 3-213 (225)
102 4ga2_A E3 SUMO-protein ligase 99.2 6.6E-11 2.3E-15 89.4 9.3 133 296-432 3-136 (150)
103 2fo7_A Synthetic consensus TPR 99.2 1.8E-09 6.2E-14 79.7 17.1 127 261-390 7-133 (136)
104 3rjv_A Putative SEL1 repeat pr 99.2 4.6E-09 1.6E-13 84.4 19.6 175 239-424 5-198 (212)
105 2pzi_A Probable serine/threoni 99.2 3.7E-09 1.3E-13 100.7 22.2 173 196-374 402-582 (681)
106 3qou_A Protein YBBN; thioredox 99.2 1.3E-09 4.5E-14 92.2 16.7 165 254-422 116-283 (287)
107 2r5s_A Uncharacterized protein 99.1 5.9E-10 2E-14 86.8 12.7 161 258-422 9-172 (176)
108 2vsy_A XCC0866; transferase, g 99.1 1E-09 3.6E-14 102.6 16.6 165 233-401 2-169 (568)
109 2yhc_A BAMD, UPF0169 lipoprote 99.1 1.2E-08 4.1E-13 82.9 20.7 189 185-393 4-217 (225)
110 3urz_A Uncharacterized protein 99.1 2.8E-09 9.4E-14 85.5 15.8 128 261-392 60-189 (208)
111 2vsy_A XCC0866; transferase, g 99.1 3.3E-09 1.1E-13 99.3 17.7 156 198-357 2-160 (568)
112 2r5s_A Uncharacterized protein 99.1 5.3E-09 1.8E-13 81.4 15.7 158 84-247 8-171 (176)
113 4gco_A Protein STI-1; structur 99.1 3.9E-09 1.3E-13 76.8 13.8 103 327-432 15-117 (126)
114 3gyz_A Chaperone protein IPGC; 99.1 3.3E-09 1.1E-13 79.6 13.0 104 324-430 35-138 (151)
115 2ifu_A Gamma-SNAP; membrane fu 99.1 7.8E-09 2.7E-13 88.4 17.0 226 160-415 3-253 (307)
116 3rjv_A Putative SEL1 repeat pr 99.0 5.7E-08 2E-12 78.0 20.6 177 204-392 5-200 (212)
117 3u3w_A Transcriptional activat 99.0 1.1E-07 3.8E-12 80.6 23.0 163 260-422 80-265 (293)
118 3qou_A Protein YBBN; thioredox 99.0 9.5E-09 3.2E-13 86.9 16.1 166 219-388 116-283 (287)
119 2vgx_A Chaperone SYCD; alterna 99.0 1.2E-09 4.1E-14 82.1 9.4 95 327-422 23-117 (148)
120 1hh8_A P67PHOX, NCF-2, neutrop 99.0 1.9E-08 6.5E-13 81.0 16.9 131 257-392 8-153 (213)
121 2e2e_A Formate-dependent nitri 99.0 2.8E-09 9.7E-14 83.0 11.5 123 267-392 22-147 (177)
122 4gco_A Protein STI-1; structur 99.0 1.2E-08 4.2E-13 74.1 14.1 111 291-403 14-124 (126)
123 3q7a_A Farnesyltransferase alp 99.0 1.8E-07 6.2E-12 79.6 22.9 226 163-422 69-330 (349)
124 1a17_A Serine/threonine protei 99.0 2.7E-08 9.2E-13 76.4 16.6 130 291-422 14-145 (166)
125 2ifu_A Gamma-SNAP; membrane fu 99.0 1.2E-08 4.2E-13 87.2 15.1 199 197-421 3-222 (307)
126 1na0_A Designed protein CTPR3; 98.9 5.4E-08 1.8E-12 70.5 14.6 113 291-405 10-122 (125)
127 2c2l_A CHIP, carboxy terminus 98.9 1.6E-08 5.4E-13 85.2 13.2 194 220-422 4-198 (281)
128 2lni_A Stress-induced-phosphop 98.9 4.3E-08 1.5E-12 72.0 14.2 118 289-408 15-132 (133)
129 3q7a_A Farnesyltransferase alp 98.9 9.7E-07 3.3E-11 75.1 23.9 262 116-401 58-344 (349)
130 2xcb_A PCRH, regulatory protei 98.9 5.7E-09 1.9E-13 77.9 9.1 92 330-422 23-114 (142)
131 2vyi_A SGTA protein; chaperone 98.9 3.6E-08 1.2E-12 72.1 13.3 119 290-410 12-130 (131)
132 3upv_A Heat shock protein STI1 98.9 3.8E-08 1.3E-12 71.6 13.2 96 326-422 5-100 (126)
133 1hh8_A P67PHOX, NCF-2, neutrop 98.9 1.6E-07 5.5E-12 75.4 17.9 130 221-356 7-152 (213)
134 1p5q_A FKBP52, FK506-binding p 98.9 5.4E-08 1.8E-12 84.2 15.9 129 292-421 149-292 (336)
135 3dss_A Geranylgeranyl transfer 98.9 2.5E-06 8.7E-11 72.2 25.1 132 160-297 41-186 (331)
136 2qfc_A PLCR protein; TPR, HTH, 98.9 7.1E-07 2.4E-11 75.7 21.9 166 257-422 77-265 (293)
137 3u3w_A Transcriptional activat 98.9 4.3E-07 1.5E-11 77.0 20.5 166 117-282 80-264 (293)
138 4gcn_A Protein STI-1; structur 98.8 5.4E-08 1.8E-12 70.9 12.1 106 327-435 10-122 (127)
139 2vgx_A Chaperone SYCD; alterna 98.8 2.6E-08 8.9E-13 74.8 10.7 106 289-396 20-125 (148)
140 4f3v_A ESX-1 secretion system 98.8 2.8E-08 9.5E-13 81.7 11.4 134 295-433 107-245 (282)
141 3gyz_A Chaperone protein IPGC; 98.8 8.5E-08 2.9E-12 71.9 13.2 102 290-393 36-137 (151)
142 4f3v_A ESX-1 secretion system 98.8 7.3E-07 2.5E-11 73.3 19.7 186 24-214 18-237 (282)
143 3gw4_A Uncharacterized protein 98.8 1.1E-07 3.6E-12 75.8 14.5 157 231-388 3-175 (203)
144 3dss_A Geranylgeranyl transfer 98.8 1.4E-05 4.7E-10 67.8 27.3 250 123-404 40-319 (331)
145 1hxi_A PEX5, peroxisome target 98.8 6.9E-08 2.4E-12 69.6 11.6 100 327-429 19-118 (121)
146 1na0_A Designed protein CTPR3; 98.8 1.7E-07 6E-12 67.7 13.7 102 325-429 9-110 (125)
147 1a17_A Serine/threonine protei 98.8 3.8E-07 1.3E-11 69.8 16.3 127 258-387 16-144 (166)
148 2qfc_A PLCR protein; TPR, HTH, 98.8 2.6E-06 8.9E-11 72.2 22.5 167 222-388 77-265 (293)
149 3upv_A Heat shock protein STI1 98.8 1.9E-07 6.6E-12 67.8 13.5 110 291-402 5-120 (126)
150 1elw_A TPR1-domain of HOP; HOP 98.8 2.3E-07 8E-12 66.2 13.7 96 326-422 5-100 (118)
151 2xcb_A PCRH, regulatory protei 98.8 1.3E-07 4.4E-12 70.5 12.6 104 291-396 19-122 (142)
152 2e2e_A Formate-dependent nitri 98.8 1.5E-07 5.2E-12 73.1 12.8 119 302-422 22-143 (177)
153 2kck_A TPR repeat; tetratricop 98.8 1.3E-07 4.3E-12 67.0 11.3 99 324-423 5-106 (112)
154 3gw4_A Uncharacterized protein 98.8 2.2E-07 7.6E-12 73.9 14.0 154 267-421 4-174 (203)
155 1elw_A TPR1-domain of HOP; HOP 98.7 4.5E-07 1.5E-11 64.7 14.3 111 291-403 5-115 (118)
156 3sz7_A HSC70 cochaperone (SGT) 98.7 1.3E-07 4.3E-12 72.5 12.0 108 289-398 10-117 (164)
157 2c2l_A CHIP, carboxy terminus 98.7 1.8E-07 6E-12 78.8 13.6 191 186-388 5-198 (281)
158 2lni_A Stress-induced-phosphop 98.7 2.2E-07 7.6E-12 68.1 12.7 104 323-429 14-117 (133)
159 2fbn_A 70 kDa peptidylprolyl i 98.7 2.9E-07 9.8E-12 73.0 14.1 97 326-423 89-186 (198)
160 3q49_B STIP1 homology and U bo 98.7 4.2E-07 1.4E-11 67.1 13.4 99 289-389 8-106 (137)
161 3sz7_A HSC70 cochaperone (SGT) 98.7 4.1E-07 1.4E-11 69.6 13.5 101 254-356 10-110 (164)
162 3q49_B STIP1 homology and U bo 98.7 5.2E-07 1.8E-11 66.6 13.5 98 324-422 8-105 (137)
163 2vyi_A SGTA protein; chaperone 98.7 5.7E-07 1.9E-11 65.5 13.4 103 324-429 11-113 (131)
164 2dba_A Smooth muscle cell asso 98.7 8.3E-07 2.8E-11 66.4 13.9 94 327-422 30-127 (148)
165 3rkv_A Putative peptidylprolyl 98.7 3.6E-07 1.2E-11 69.7 11.9 61 362-422 65-125 (162)
166 1p5q_A FKBP52, FK506-binding p 98.7 8.7E-07 3E-11 76.6 15.6 96 290-387 196-292 (336)
167 1elr_A TPR2A-domain of HOP; HO 98.6 4.8E-07 1.6E-11 66.0 12.1 99 292-391 6-110 (131)
168 2dba_A Smooth muscle cell asso 98.6 1.6E-06 5.5E-11 64.7 14.8 115 289-404 27-143 (148)
169 2xev_A YBGF; tetratricopeptide 98.6 1.1E-06 3.8E-11 64.0 13.1 97 296-394 8-110 (129)
170 3k9i_A BH0479 protein; putativ 98.6 8.6E-08 2.9E-12 68.7 6.3 85 338-422 3-89 (117)
171 2fbn_A 70 kDa peptidylprolyl i 98.6 1.3E-07 4.6E-12 75.0 7.4 104 326-431 39-157 (198)
172 1wao_1 Serine/threonine protei 98.6 3.8E-07 1.3E-11 82.8 11.2 119 298-418 14-134 (477)
173 1hxi_A PEX5, peroxisome target 98.6 9E-07 3.1E-11 63.6 11.0 99 292-392 19-117 (121)
174 1elr_A TPR2A-domain of HOP; HO 98.6 1.4E-06 4.7E-11 63.5 12.2 95 327-422 6-107 (131)
175 4b4t_Q 26S proteasome regulato 98.5 8.5E-06 2.9E-10 73.3 19.8 57 191-247 10-82 (434)
176 2hr2_A Hypothetical protein; a 98.5 4.5E-06 1.5E-10 61.9 14.4 106 330-435 16-148 (159)
177 2xev_A YBGF; tetratricopeptide 98.5 5.2E-06 1.8E-10 60.3 15.0 92 330-422 7-104 (129)
178 2kck_A TPR repeat; tetratricop 98.5 1.7E-06 5.6E-11 61.0 11.7 102 290-392 6-109 (112)
179 1kt0_A FKBP51, 51 kDa FK506-bi 98.5 2.4E-06 8.1E-11 77.3 14.9 129 292-421 270-413 (457)
180 4gcn_A Protein STI-1; structur 98.5 2.4E-06 8.3E-11 62.0 11.9 99 292-391 10-114 (127)
181 3ro3_A PINS homolog, G-protein 98.5 1.9E-06 6.6E-11 65.4 11.7 131 292-422 11-157 (164)
182 1ihg_A Cyclophilin 40; ppiase 98.5 2.3E-06 8E-11 74.8 13.5 122 293-416 226-363 (370)
183 4b4t_Q 26S proteasome regulato 98.5 1.4E-05 4.9E-10 71.8 18.7 199 154-352 10-243 (434)
184 3rkv_A Putative peptidylprolyl 98.4 2.4E-06 8.3E-11 65.1 11.6 76 324-400 62-138 (162)
185 1zu2_A Mitochondrial import re 98.4 7.7E-07 2.6E-11 65.8 7.9 98 337-437 14-132 (158)
186 2if4_A ATFKBP42; FKBP-like, al 98.4 1.3E-06 4.3E-11 75.6 9.9 148 255-422 179-327 (338)
187 1dce_A Protein (RAB geranylger 98.4 2.2E-05 7.7E-10 72.6 18.7 173 236-412 45-244 (567)
188 3k9i_A BH0479 protein; putativ 98.4 6.5E-07 2.2E-11 64.0 6.8 92 303-395 3-96 (117)
189 1dce_A Protein (RAB geranylger 98.4 2.4E-05 8.1E-10 72.4 18.2 158 269-431 43-227 (567)
190 3ro3_A PINS homolog, G-protein 98.3 1E-05 3.4E-10 61.3 12.0 98 292-389 51-158 (164)
191 1wao_1 Serine/threonine protei 98.3 5.1E-06 1.7E-10 75.4 11.6 121 226-349 12-134 (477)
192 1ihg_A Cyclophilin 40; ppiase 98.3 8.6E-06 2.9E-10 71.2 12.0 105 326-432 224-343 (370)
193 1kt0_A FKBP51, 51 kDa FK506-bi 98.2 1.4E-05 4.8E-10 72.2 13.2 105 324-430 267-385 (457)
194 2l6j_A TPR repeat-containing p 98.2 1.8E-06 6.2E-11 60.8 5.3 94 324-418 3-102 (111)
195 2kat_A Uncharacterized protein 98.2 1.3E-05 4.5E-10 56.8 9.4 82 308-391 3-84 (115)
196 2hr2_A Hypothetical protein; a 98.2 1.2E-05 4.2E-10 59.5 9.0 98 298-396 19-138 (159)
197 1na3_A Designed protein CTPR2; 98.2 2.7E-05 9.3E-10 52.3 10.3 82 325-407 9-90 (91)
198 1klx_A Cysteine rich protein B 98.1 9.6E-05 3.3E-09 54.3 13.5 110 305-424 10-127 (138)
199 2if4_A ATFKBP42; FKBP-like, al 98.1 1.1E-05 3.7E-10 69.8 9.6 153 219-392 178-331 (338)
200 2kat_A Uncharacterized protein 98.1 3.4E-05 1.1E-09 54.7 10.7 78 274-353 4-81 (115)
201 3n71_A Histone lysine methyltr 98.0 7.5E-05 2.6E-09 67.4 13.5 124 299-422 318-463 (490)
202 2l6j_A TPR repeat-containing p 98.0 1.5E-05 5E-10 56.0 6.6 96 10-108 2-104 (111)
203 3ma5_A Tetratricopeptide repea 98.0 4.9E-05 1.7E-09 52.2 8.9 65 324-389 6-70 (100)
204 1klx_A Cysteine rich protein B 97.9 0.00041 1.4E-08 50.8 13.6 110 270-390 10-127 (138)
205 1zu2_A Mitochondrial import re 97.9 4.5E-05 1.5E-09 56.4 7.6 91 303-395 15-126 (158)
206 3n71_A Histone lysine methyltr 97.9 0.00011 3.8E-09 66.3 11.6 126 264-389 318-464 (490)
207 3ma5_A Tetratricopeptide repea 97.8 9.9E-05 3.4E-09 50.6 8.5 63 360-422 7-69 (100)
208 1na3_A Designed protein CTPR2; 97.8 0.00018 6.1E-09 48.1 9.0 69 359-429 8-76 (91)
209 1pc2_A Mitochondria fission pr 97.7 0.00046 1.6E-08 50.5 9.8 85 306-392 14-103 (152)
210 2kc7_A BFR218_protein; tetratr 97.6 0.00024 8.2E-09 48.5 7.9 82 331-421 6-88 (99)
211 3ly7_A Transcriptional activat 97.6 0.0021 7.1E-08 54.8 14.7 73 358-433 275-347 (372)
212 3bee_A Putative YFRE protein; 97.6 0.00055 1.9E-08 45.9 9.0 66 358-423 4-72 (93)
213 2kc7_A BFR218_protein; tetratr 97.4 0.00065 2.2E-08 46.2 7.3 62 366-429 6-68 (99)
214 3qww_A SET and MYND domain-con 97.3 0.0015 5.2E-08 58.0 10.2 86 337-422 310-410 (433)
215 3lvg_A Clathrin heavy chain 1; 97.3 2.1E-05 7.1E-10 68.4 -1.6 245 11-274 53-323 (624)
216 3mkq_A Coatomer beta'-subunit; 97.3 0.015 5E-07 56.9 18.1 102 51-175 633-734 (814)
217 3ly7_A Transcriptional activat 97.2 0.0033 1.1E-07 53.6 11.2 137 44-189 191-347 (372)
218 2v5f_A Prolyl 4-hydroxylase su 97.2 0.0028 9.5E-08 43.6 8.7 77 324-400 4-86 (104)
219 3qwp_A SET and MYND domain-con 97.1 0.0033 1.1E-07 55.8 10.7 90 333-422 295-399 (429)
220 1pc2_A Mitochondria fission pr 97.1 0.008 2.8E-07 43.9 10.5 87 341-430 14-105 (152)
221 3lvg_A Clathrin heavy chain 1; 97.1 0.00044 1.5E-08 60.4 4.4 212 10-240 81-324 (624)
222 1wy6_A Hypothetical protein ST 97.0 0.046 1.6E-06 38.5 16.6 138 267-425 19-156 (172)
223 3mkq_A Coatomer beta'-subunit; 97.0 0.013 4.4E-07 57.3 14.8 151 93-280 610-761 (814)
224 1nzn_A CGI-135 protein, fissio 96.9 0.0091 3.1E-07 41.9 9.2 79 343-422 19-102 (126)
225 2v5f_A Prolyl 4-hydroxylase su 96.9 0.012 4E-07 40.4 9.9 64 291-354 6-75 (104)
226 3u64_A Protein TP_0956; tetrat 96.9 0.0082 2.8E-07 49.1 10.1 86 307-392 180-272 (301)
227 3bee_A Putative YFRE protein; 96.9 0.015 5E-07 38.8 9.9 68 324-392 5-75 (93)
228 4h7y_A Dual specificity protei 96.9 0.027 9.4E-07 40.6 11.5 66 338-404 73-138 (161)
229 3qww_A SET and MYND domain-con 96.8 0.0041 1.4E-07 55.2 8.6 63 291-353 341-410 (433)
230 3qwp_A SET and MYND domain-con 96.7 0.0065 2.2E-07 54.0 9.2 61 292-352 331-398 (429)
231 1wy6_A Hypothetical protein ST 96.6 0.11 3.6E-06 36.8 14.9 138 233-392 20-157 (172)
232 4h7y_A Dual specificity protei 96.3 0.061 2.1E-06 38.8 10.1 54 304-358 74-127 (161)
233 3mkq_B Coatomer subunit alpha; 96.3 0.24 8.3E-06 37.2 15.6 44 94-138 17-60 (177)
234 1nzn_A CGI-135 protein, fissio 96.2 0.062 2.1E-06 37.7 9.5 91 305-396 16-110 (126)
235 3mkq_B Coatomer subunit alpha; 96.2 0.27 9.4E-06 36.9 15.4 46 195-246 15-60 (177)
236 3u64_A Protein TP_0956; tetrat 96.1 0.46 1.6E-05 39.0 20.5 84 129-217 180-272 (301)
237 4b4t_P 26S proteasome regulato 95.9 0.91 3.1E-05 40.5 19.4 187 162-353 30-246 (445)
238 3o48_A Mitochondria fission 1 95.8 0.2 7E-06 35.3 10.7 72 356-429 36-111 (134)
239 4gns_B Protein CSD3, chitin bi 95.3 0.25 8.7E-06 46.8 12.8 53 368-420 345-397 (754)
240 1y8m_A FIS1; mitochondria, unk 95.2 0.56 1.9E-05 33.6 12.3 70 358-429 37-110 (144)
241 2ff4_A Probable regulatory pro 95.2 0.11 3.6E-06 45.5 9.4 69 363-431 174-247 (388)
242 4ady_A RPN2, 26S proteasome re 94.9 3.1 0.0001 40.6 27.7 257 157-422 383-657 (963)
243 4fhn_B Nucleoporin NUP120; pro 94.5 0.75 2.6E-05 46.7 14.7 83 187-271 901-987 (1139)
244 4gns_B Protein CSD3, chitin bi 94.1 0.63 2.1E-05 44.2 12.2 52 334-386 346-397 (754)
245 1qsa_A Protein (soluble lytic 93.7 4.5 0.00015 37.7 25.8 115 270-388 229-347 (618)
246 4b4t_P 26S proteasome regulato 93.4 4.1 0.00014 36.3 18.6 189 198-389 29-247 (445)
247 2ff4_A Probable regulatory pro 92.5 0.51 1.8E-05 41.2 8.6 57 51-108 175-231 (388)
248 3o48_A Mitochondria fission 1 92.4 2.1 7.1E-05 30.3 10.8 74 322-395 37-113 (134)
249 4fhn_B Nucleoporin NUP120; pro 92.0 6.4 0.00022 40.1 16.8 21 88-108 848-868 (1139)
250 3txn_A 26S proteasome regulato 91.9 5.8 0.0002 34.4 21.2 95 153-247 104-208 (394)
251 3ffl_A Anaphase-promoting comp 90.9 2.4 8.1E-05 31.4 9.1 70 6-75 12-91 (167)
252 1zbp_A Hypothetical protein VP 89.9 0.89 3E-05 36.7 6.7 59 333-392 5-63 (273)
253 3esl_A Checkpoint serine/threo 89.9 3.3 0.00011 31.7 9.5 56 338-393 92-148 (202)
254 1v54_E Cytochrome C oxidase po 89.8 3.1 0.00011 27.6 9.1 63 27-90 25-87 (109)
255 2wpv_A GET4, UPF0363 protein Y 89.7 8 0.00027 32.3 19.6 25 324-348 133-157 (312)
256 3ffl_A Anaphase-promoting comp 89.7 4.9 0.00017 29.7 10.1 114 295-420 25-148 (167)
257 3txn_A 26S proteasome regulato 89.6 9.7 0.00033 33.1 18.9 241 185-430 19-290 (394)
258 4b4t_R RPN7, 26S proteasome re 89.4 3.8 0.00013 36.3 11.2 100 150-249 133-237 (429)
259 1y8m_A FIS1; mitochondria, unk 88.8 5.1 0.00017 28.7 12.4 73 322-394 36-111 (144)
260 1v54_E Cytochrome C oxidase po 88.7 3.9 0.00013 27.2 9.4 45 308-352 28-72 (109)
261 2y69_E Cytochrome C oxidase su 88.0 5.5 0.00019 28.1 8.9 57 64-120 70-130 (152)
262 2p58_C Putative type III secre 87.0 4.4 0.00015 26.8 7.2 54 62-117 22-76 (116)
263 1zbp_A Hypothetical protein VP 86.9 3.9 0.00013 33.0 8.5 118 298-422 5-128 (273)
264 4a1g_A Mitotic checkpoint seri 85.9 6.7 0.00023 28.5 8.6 49 379-427 84-134 (152)
265 3esl_A Checkpoint serine/threo 85.5 8 0.00027 29.7 9.2 55 163-218 94-148 (202)
266 3lpz_A GET4 (YOR164C homolog); 85.4 16 0.00054 30.8 21.9 82 323-422 134-215 (336)
267 2uwj_G Type III export protein 85.2 4.2 0.00014 26.8 6.4 73 62-138 21-94 (115)
268 1wdy_A 2-5A-dependent ribonucl 84.9 14 0.00048 29.9 11.9 21 268-288 192-212 (285)
269 4ady_A RPN2, 26S proteasome re 84.2 33 0.0011 33.7 32.8 24 85-108 233-256 (963)
270 2y69_E Cytochrome C oxidase su 83.5 9.7 0.00033 26.9 9.5 46 344-389 72-117 (152)
271 2wvi_A Mitotic checkpoint seri 83.3 9.9 0.00034 28.1 8.7 53 343-395 78-131 (164)
272 1wdy_A 2-5A-dependent ribonucl 83.2 14 0.00048 29.9 11.1 15 344-358 198-212 (285)
273 4b4t_R RPN7, 26S proteasome re 83.0 24 0.00083 31.1 15.0 100 185-284 131-237 (429)
274 3eiq_C Programmed cell death p 80.7 26 0.00089 29.9 13.0 75 186-263 55-131 (358)
275 4a1g_A Mitotic checkpoint seri 80.1 15 0.00051 26.7 8.7 53 165-218 82-134 (152)
276 3eu9_A Huntingtin-interacting 77.6 17 0.00058 28.5 9.5 11 336-346 218-228 (240)
277 2wpv_A GET4, UPF0363 protein Y 77.4 30 0.001 28.8 19.8 25 289-313 133-157 (312)
278 3kea_A K1L; tropism, ANK repea 76.5 25 0.00086 28.8 10.4 145 191-352 34-185 (285)
279 1n11_A Ankyrin; clathrin, BAND 75.4 42 0.0014 29.4 13.6 334 53-429 17-372 (437)
280 1k1a_A B-cell lymphoma 3-encod 75.2 28 0.00095 27.3 10.5 20 159-178 17-36 (241)
281 2wvi_A Mitotic checkpoint seri 75.0 23 0.00078 26.2 8.8 54 165-219 77-130 (164)
282 3lpz_A GET4 (YOR164C homolog); 74.4 38 0.0013 28.5 22.4 82 217-317 133-214 (336)
283 3hra_A Ankyrin repeat family p 72.5 21 0.00072 27.0 8.5 47 57-107 46-94 (201)
284 2d2s_A Exocyst complex compone 70.1 29 0.001 27.5 8.6 87 18-107 24-116 (235)
285 3hra_A Ankyrin repeat family p 69.2 34 0.0012 25.8 9.1 12 124-135 14-25 (201)
286 4aez_C MAD3, mitotic spindle c 68.7 35 0.0012 26.7 8.5 52 342-393 131-183 (223)
287 2nsz_A Programmed cell death p 68.4 21 0.00071 25.1 6.8 67 327-394 9-77 (129)
288 4aez_C MAD3, mitotic spindle c 67.5 27 0.00092 27.3 7.6 54 164-218 130-183 (223)
289 3b7b_A Euchromatic histone-lys 67.3 35 0.0012 26.6 9.0 19 300-318 217-235 (237)
290 3eu9_A Huntingtin-interacting 67.2 22 0.00074 27.8 7.7 17 91-107 48-64 (240)
291 2zu6_B Programmed cell death p 67.1 54 0.0019 27.3 12.8 63 259-322 170-234 (307)
292 1n11_A Ankyrin; clathrin, BAND 66.9 66 0.0022 28.2 13.4 327 18-384 17-365 (437)
293 1qsa_A Protein (soluble lytic 66.3 85 0.0029 29.3 33.9 145 14-165 9-153 (618)
294 3b7b_A Euchromatic histone-lys 66.1 29 0.001 27.1 8.3 18 91-108 83-100 (237)
295 2zu6_B Programmed cell death p 64.4 61 0.0021 26.9 11.1 67 363-429 169-237 (307)
296 3ltj_A Alpharep-4; protein eng 63.7 45 0.0016 25.2 19.1 110 81-201 58-168 (201)
297 2ion_A PDCD4, programmed cell 62.3 30 0.001 25.2 6.8 67 327-394 11-79 (152)
298 3ltm_A Alpha-REP4; protein eng 60.1 55 0.0019 25.0 18.8 166 29-213 18-184 (211)
299 1bpo_A Protein (clathrin); cla 58.5 24 0.00082 31.2 6.4 21 49-69 363-383 (494)
300 3mv2_A Coatomer subunit alpha; 56.2 64 0.0022 26.9 8.3 130 92-234 124-256 (325)
301 4b4t_S RPN3, 26S proteasome re 55.2 35 0.0012 30.8 7.1 69 148-216 231-301 (523)
302 3ltm_A Alpha-REP4; protein eng 55.1 68 0.0023 24.5 20.5 171 80-269 31-202 (211)
303 1k1a_A B-cell lymphoma 3-encod 55.0 72 0.0025 24.8 11.4 24 56-79 15-38 (241)
304 3aji_A 26S proteasome non-ATPa 54.2 67 0.0023 24.8 8.4 19 19-37 10-28 (231)
305 3jxi_A Vanilloid receptor-rela 52.9 39 0.0013 26.9 6.9 55 19-73 9-72 (260)
306 3kae_A CDC27, possible protein 52.8 69 0.0024 23.9 8.6 108 114-248 34-142 (242)
307 2xig_A Ferric uptake regulatio 49.5 71 0.0024 23.0 7.3 58 316-374 18-75 (150)
308 2ijq_A Hypothetical protein; s 49.5 75 0.0026 23.3 7.2 60 15-75 36-103 (161)
309 2uwj_G Type III export protein 48.6 57 0.0019 21.7 8.8 52 120-178 47-98 (115)
310 1ug3_A EIF4GI, eukaryotic prot 47.9 1.3E+02 0.0043 25.5 9.9 25 151-175 14-38 (339)
311 3jxi_A Vanilloid receptor-rela 47.9 52 0.0018 26.1 6.9 22 231-252 13-34 (260)
312 2p58_C Putative type III secre 47.7 59 0.002 21.6 9.1 51 121-178 49-99 (116)
313 3ljn_A Hypothetical protein; a 47.7 1.2E+02 0.0042 25.5 9.6 92 190-289 22-115 (364)
314 2xig_A Ferric uptake regulatio 47.7 68 0.0023 23.1 6.7 43 227-269 33-75 (150)
315 2fe3_A Peroxide operon regulat 47.3 63 0.0022 23.1 6.5 32 238-269 39-70 (145)
316 2b7e_A PRE-mRNA processing pro 45.1 29 0.00099 20.3 3.4 29 29-57 3-31 (59)
317 2fe3_A Peroxide operon regulat 44.1 85 0.0029 22.4 7.2 42 333-374 29-70 (145)
318 1ug3_A EIF4GI, eukaryotic prot 43.7 1.5E+02 0.0051 25.1 11.4 24 86-109 15-38 (339)
319 1mzb_A Ferric uptake regulatio 43.5 83 0.0029 22.1 6.7 61 37-98 8-69 (136)
320 3eyy_A Putative iron uptake re 43.5 77 0.0026 22.7 6.4 61 36-98 8-68 (145)
321 2etb_A Transient receptor pote 43.4 94 0.0032 24.5 7.8 207 152-363 3-256 (256)
322 3pvs_A Replication-associated 42.8 1.8E+02 0.0061 25.8 15.2 142 235-392 166-327 (447)
323 1wgl_A TOLL-interacting protei 42.5 50 0.0017 19.3 4.2 16 125-140 36-51 (59)
324 2w57_A Ferric uptake regulatio 42.3 94 0.0032 22.4 6.9 62 36-98 6-68 (150)
325 3eiq_C Programmed cell death p 42.2 1.6E+02 0.0056 25.1 16.7 26 150-175 56-81 (358)
326 3bu8_A Telomeric repeat-bindin 41.6 1.1E+02 0.0036 23.8 6.8 49 306-354 88-143 (235)
327 1mzb_A Ferric uptake regulatio 41.4 75 0.0026 22.4 6.0 57 317-374 10-67 (136)
328 4ets_A Ferric uptake regulatio 41.3 1E+02 0.0035 22.6 6.9 57 317-374 25-83 (162)
329 2ijq_A Hypothetical protein; s 40.8 1.1E+02 0.0036 22.6 7.8 54 335-388 42-103 (161)
330 4g8k_A 2-5A-dependent ribonucl 39.4 1.6E+02 0.0056 24.4 15.3 103 312-429 221-329 (337)
331 2d2s_A Exocyst complex compone 39.3 1.4E+02 0.0048 23.6 10.4 89 191-282 24-118 (235)
332 3eyy_A Putative iron uptake re 39.2 55 0.0019 23.5 5.0 31 238-268 35-65 (145)
333 4ets_A Ferric uptake regulatio 38.7 73 0.0025 23.4 5.7 69 29-98 14-85 (162)
334 3aji_A 26S proteasome non-ATPa 38.5 1.3E+02 0.0045 23.0 9.1 14 123-136 14-27 (231)
335 2w57_A Ferric uptake regulatio 38.1 83 0.0028 22.7 5.9 32 341-372 33-64 (150)
336 4gq2_M Nucleoporin NUP120; bet 38.0 2.6E+02 0.0088 27.9 11.0 110 88-199 816-950 (950)
337 2fu4_A Ferric uptake regulatio 38.0 72 0.0025 19.8 6.8 60 37-97 7-67 (83)
338 3t8k_A Uncharacterized protein 37.8 1.3E+02 0.0043 22.5 9.6 14 168-181 94-107 (186)
339 2o03_A Probable zinc uptake re 37.5 84 0.0029 21.9 5.7 47 52-98 15-61 (131)
340 1bd8_A P19INK4D CDK4/6 inhibit 37.2 85 0.0029 22.2 6.1 13 124-136 11-23 (156)
341 2ion_A PDCD4, programmed cell 37.1 1.2E+02 0.004 22.0 9.4 65 292-357 11-77 (152)
342 3d9h_A CDNA FLJ77766, highly s 37.0 1.6E+02 0.0056 23.7 9.6 27 11-37 11-37 (285)
343 3ltj_A Alpharep-4; protein eng 36.6 1.3E+02 0.0046 22.5 20.8 169 81-268 27-196 (201)
344 3mwm_A ZUR, putative metal upt 36.0 83 0.0028 22.3 5.5 48 51-98 17-64 (139)
345 1bd8_A P19INK4D CDK4/6 inhibit 35.5 86 0.0029 22.2 5.8 14 94-107 11-24 (156)
346 3ljn_A Hypothetical protein; a 35.2 2E+02 0.0069 24.2 9.3 100 146-254 16-115 (364)
347 2o03_A Probable zinc uptake re 34.5 74 0.0025 22.2 5.0 47 17-63 15-61 (131)
348 3kea_A K1L; tropism, ANK repea 34.2 1.8E+02 0.0063 23.4 12.9 13 94-106 40-52 (285)
349 4gq2_M Nucleoporin NUP120; bet 33.8 3.7E+02 0.013 26.8 13.8 132 117-269 815-950 (950)
350 3mwm_A ZUR, putative metal upt 33.6 67 0.0023 22.8 4.7 46 17-62 18-63 (139)
351 2nsz_A Programmed cell death p 33.6 1.2E+02 0.0042 21.1 10.3 65 292-357 9-75 (129)
352 2rfa_A Transient receptor pote 33.2 1.6E+02 0.0056 22.5 10.5 19 302-320 163-181 (232)
353 3f3f_C Nucleoporin NUP85; stru 32.4 1.5E+02 0.005 27.2 7.5 27 48-74 517-543 (570)
354 2qx5_A Nucleoporin NIC96; mRNA 32.4 3.2E+02 0.011 25.7 20.3 80 191-281 300-382 (661)
355 2rg8_A Programmed cell death p 31.8 28 0.00097 25.7 2.5 24 116-139 14-37 (165)
356 3ygs_P Procaspase 9; apoptosis 31.1 1.1E+02 0.0038 20.0 7.3 32 200-235 52-83 (97)
357 2f6m_A Suppressor protein STP2 30.8 89 0.003 18.7 5.1 45 363-407 5-49 (65)
358 4b4t_S RPN3, 26S proteasome re 30.7 3.1E+02 0.01 24.9 15.3 15 237-251 417-431 (523)
359 2rg8_A Programmed cell death p 30.2 1.6E+02 0.0056 21.6 6.5 22 153-174 15-36 (165)
360 1oai_A Nuclear RNA export fact 29.1 42 0.0014 19.7 2.4 24 125-148 33-56 (59)
361 2dzn_A Probable 26S proteasome 28.0 66 0.0022 24.8 4.3 19 192-210 6-24 (228)
362 3e3v_A Regulatory protein RECX 28.0 1.9E+02 0.0064 21.6 10.3 25 397-421 139-164 (177)
363 3f3f_C Nucleoporin NUP85; stru 27.3 1.7E+02 0.0058 26.8 7.0 74 234-309 495-568 (570)
364 3t8k_A Uncharacterized protein 27.0 1.9E+02 0.0067 21.4 11.8 28 227-254 42-69 (186)
365 2r9g_A AAA ATPase, central reg 26.7 2.2E+02 0.0074 21.9 11.1 35 199-234 28-62 (204)
366 2p22_A Suppressor protein STP2 26.4 96 0.0033 23.1 4.4 53 44-97 108-160 (174)
367 2r9g_A AAA ATPase, central reg 26.4 2.2E+02 0.0075 21.8 10.4 55 337-392 26-85 (204)
368 3bge_A Predicted ATPase; struc 25.6 2.3E+02 0.0077 21.7 9.7 21 199-219 21-41 (201)
369 3pvs_A Replication-associated 25.0 3.6E+02 0.012 23.8 15.2 140 200-355 166-325 (447)
370 1oyz_A Hypothetical protein YI 25.0 2.6E+02 0.009 22.3 22.4 216 45-284 35-263 (280)
371 2p22_A Suppressor protein STP2 24.9 1.6E+02 0.0055 21.9 5.3 49 360-408 111-159 (174)
372 2crb_A Nuclear receptor bindin 24.4 1.3E+02 0.0046 19.5 4.1 19 365-383 20-38 (97)
373 4g8k_A 2-5A-dependent ribonucl 24.2 3E+02 0.01 22.7 15.3 277 16-325 26-329 (337)
374 1wty_A Hypothetical protein TT 24.0 1.8E+02 0.006 19.9 6.7 77 304-387 2-79 (119)
375 3bu8_A Telomeric repeat-bindin 23.6 2.6E+02 0.0089 21.7 10.7 22 119-140 121-142 (235)
376 1ya0_A SMG-7 transcript varian 23.5 4.1E+02 0.014 23.9 9.9 71 334-405 161-231 (497)
377 4b4t_O 26S proteasome regulato 23.1 3.6E+02 0.012 23.2 9.2 58 296-353 82-155 (393)
378 3i5p_A Nucleoporin NUP170; hel 22.6 4.4E+02 0.015 24.0 8.9 30 222-251 219-248 (525)
379 3bge_A Predicted ATPase; struc 22.4 2.6E+02 0.009 21.3 9.4 33 304-336 21-53 (201)
380 2yru_A Steroid receptor RNA ac 21.8 1.9E+02 0.0065 19.9 5.0 19 370-388 71-89 (118)
381 3t5v_B Nuclear mRNA export pro 21.7 1.8E+02 0.0063 25.8 6.1 61 292-352 178-247 (455)
382 1jog_A Hypothetical protein HI 21.7 2.3E+02 0.0078 20.3 6.3 47 129-176 55-104 (146)
383 4fke_A Aminopeptidase N; zinc 21.3 6E+02 0.021 25.1 17.5 87 52-140 691-786 (909)
384 4fke_A Aminopeptidase N; zinc 21.0 6.1E+02 0.021 25.1 18.4 24 259-282 762-785 (909)
385 3t5v_B Nuclear mRNA export pro 20.6 3.4E+02 0.012 24.1 7.6 65 150-214 178-249 (455)
386 1zl8_A LIN-7; heterodimer, alp 20.5 1.3E+02 0.0043 16.9 3.9 15 28-42 9-23 (53)
387 3ctd_A Putative ATPase, AAA fa 20.2 3E+02 0.01 21.2 10.3 95 188-283 35-137 (213)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.4e-40 Score=309.95 Aligned_cols=415 Identities=14% Similarity=0.017 Sum_probs=360.0
Q ss_pred CCChHhHHHHHHHHHccCCcchHHHHHHHHHhcCCccChHhHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHH
Q 047359 9 DSQSDALSLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLV 88 (440)
Q Consensus 9 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 88 (440)
.++...|+.++..+.+.|++++|+.+|+++... .|+..++..++.+|.+.|++++|..+|+.+... +++..+++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l 156 (597)
T 2xpi_A 81 LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLA 156 (597)
T ss_dssp -CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHH
Confidence 367889999999999999999999999999864 578889999999999999999999999998653 6788999999
Q ss_pred HHHHHhcCChHHHHHHHhcccCC--------------------chhHHHHHHHHHhcCChhHHHHHHHHHhcCCC-----
Q 047359 89 AQILCRSGKFEVVLGLLDSGIYS--------------------SVMYNLVIDFYSKKGDFGAAFDRLNEMCNGRN----- 143 (440)
Q Consensus 89 ~~~~~~~~~~~~a~~~~~~~~~~--------------------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~----- 143 (440)
+.+|.+.|++++|.++|+++.|+ ..+|+.++.+|.+.|++++|.++|++|.+...
T Consensus 157 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 236 (597)
T 2xpi_A 157 AFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEA 236 (597)
T ss_dssp HHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHH
Confidence 99999999999999999976533 67899999999999999999999999865110
Q ss_pred ----------------------------------------------------------------CCCchhhHHHHHHHHH
Q 047359 144 ----------------------------------------------------------------LTPGFSTYSSILDGAR 159 (440)
Q Consensus 144 ----------------------------------------------------------------~~p~~~~~~~l~~~~~ 159 (440)
.+++..+++.++.++.
T Consensus 237 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~ 316 (597)
T 2xpi_A 237 FDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLF 316 (597)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHH
T ss_pred HHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHH
Confidence 1256677888888888
Q ss_pred hcCChhhHHHHHHHHHhcCCCCcccccchHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHH
Q 047359 160 RYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEA 239 (440)
Q Consensus 160 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 239 (440)
+.|++++|.++|+++.+.+ |++ ..++..++.++.+.|++++|.++++++.+..+ .+..+++.++..|.+.|++++|
T Consensus 317 ~~g~~~~A~~~~~~~~~~~--~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A 392 (597)
T 2xpi_A 317 VRSRFIDVLAITTKILEID--PYN-LDVYPLHLASLHESGEKNKLYLISNDLVDRHP-EKAVTWLAVGIYYLCVNKISEA 392 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHC--TTC-CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSHHHHHHHHHHHHHTTCHHHH
T ss_pred HhcCHHHHHHHHHHHHHcC--ccc-HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHhccHHHH
Confidence 9999999999999988765 332 77888899999999999999999998886544 3788999999999999999999
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 047359 240 IQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDK 319 (440)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 319 (440)
.++|+++.+.... +..+|..++..+.+.|++++|.++|+.+.+.+ +.+..++..++.+|.+.|++++|.++|+++.+.
T Consensus 393 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (597)
T 2xpi_A 393 RRYFSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL 470 (597)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999886543 67789999999999999999999999998764 457888999999999999999999999999887
Q ss_pred CCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhc----cCCcC--HHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCc
Q 047359 320 GLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKL----KGSLD--VATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVS 393 (440)
Q Consensus 320 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 393 (440)
.+. +..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.+.|+++.+.+|.+
T Consensus 471 ~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 549 (597)
T 2xpi_A 471 FQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTND 549 (597)
T ss_dssp CCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCC
T ss_pred CCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Confidence 544 7889999999999999999999999999876 55777 7899999999999999999999999999998889
Q ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHCCCCCCHH-HHHHHh
Q 047359 394 SSSFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDEA-TYKQVI 436 (440)
Q Consensus 394 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-t~~~ll 436 (440)
+.+|..++.+|.+.|++++|.+.++++.+ +.|+.. .+..+-
T Consensus 550 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~l~ 591 (597)
T 2xpi_A 550 ANVHTAIALVYLHKKIPGLAITHLHESLA--ISPNEIMASDLLK 591 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCChHHHHHHH
Confidence 99999999999999999999999999998 467654 444443
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.3e-37 Score=294.67 Aligned_cols=401 Identities=14% Similarity=0.039 Sum_probs=339.8
Q ss_pred ccCCcchHHHHHHHHHhcCCccChHhHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHH
Q 047359 24 HKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSGKFEVVLG 103 (440)
Q Consensus 24 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 103 (440)
+.|.+..+...+..+. .++...|+.++..+.+.|++++|..+|+++.+. .|+..++..++.+|.+.|++++|..
T Consensus 65 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~ 138 (597)
T 2xpi_A 65 TDGSFLKERNAQNTDS----LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKC 138 (597)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccCccCCCCCccccch----HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHH
Confidence 3444445555554443 367889999999999999999999999999864 5788999999999999999999999
Q ss_pred HHhccc---CCchhHHHHHHHHHhcCChhHHHHHHHHHhcCC--------------CCCCchhhHHHHHHHHHhcCChhh
Q 047359 104 LLDSGI---YSSVMYNLVIDFYSKKGDFGAAFDRLNEMCNGR--------------NLTPGFSTYSSILDGARRYEKTEV 166 (440)
Q Consensus 104 ~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--------------~~~p~~~~~~~l~~~~~~~~~~~~ 166 (440)
+|+++. ++..+++.++.+|.+.|++++|.++|+++.... +..++..+|+.++.+|.+.|++++
T Consensus 139 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 218 (597)
T 2xpi_A 139 LLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDR 218 (597)
T ss_dssp HHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHH
Confidence 999985 788899999999999999999999999643312 234568899999999999999999
Q ss_pred HHHHHHHHHhcCCCCcccccchHH--------------------------------------HHHHHhhcCcHHHHHHHH
Q 047359 167 SDRIVGLMVEKKLLPKHFLSGNDY--------------------------------------VIQKLSDMGKTYAAEMIF 208 (440)
Q Consensus 167 a~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------l~~~~~~~~~~~~a~~~~ 208 (440)
|.+.|+++.+.+ |+. ...+.. ++..|.+.|++++|.++|
T Consensus 219 A~~~~~~~~~~~--p~~-~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 295 (597)
T 2xpi_A 219 AKECYKEALMVD--AKC-YEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYL 295 (597)
T ss_dssp HHHHHHHHHHHC--TTC-HHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--chh-hHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHH
Confidence 999999999865 432 223222 255667889999999999
Q ss_pred HHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 047359 209 KRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIP 288 (440)
Q Consensus 209 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 288 (440)
+++.+. .++..+++.++.+|.+.|++++|..+|+++.+.++. +..++..++.++.+.|++++|..+++.+.+.. +.
T Consensus 296 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~ 371 (597)
T 2xpi_A 296 SSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PE 371 (597)
T ss_dssp HTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TT
T ss_pred HHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cc
Confidence 998876 478999999999999999999999999999987654 77889999999999999999999999998654 55
Q ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHH
Q 047359 289 CAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLD 368 (440)
Q Consensus 289 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 368 (440)
+..++..++..|.+.|++++|.++|+++.+..+. +..+|+.++.+|.+.|++++|.++|+++.+.+. .+..+|..++.
T Consensus 372 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~ 449 (597)
T 2xpi_A 372 KAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ-GTHLPYLFLGM 449 (597)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT-TCSHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHH
Confidence 7889999999999999999999999999886543 678999999999999999999999999998654 37889999999
Q ss_pred HHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcccHHHHHHHHHHHHHC----CCCCC--HHHHHHHhhhc
Q 047359 369 GLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLKELRKAMKNHDEMLKM----GHKPD--EATYKQVISGF 439 (440)
Q Consensus 369 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~p~--~~t~~~ll~a~ 439 (440)
+|.+.|++++|.++|+++.+..+.++.+|..++..|.+.|++++|.++|+++.+. +..|+ ..+|..+..+|
T Consensus 450 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~ 526 (597)
T 2xpi_A 450 QHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAY 526 (597)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHH
Confidence 9999999999999999999998889999999999999999999999999999875 77888 67888887665
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=5e-31 Score=235.73 Aligned_cols=377 Identities=11% Similarity=0.045 Sum_probs=226.6
Q ss_pred HHHHHccCCcchHHHHHHHHHhcCCccChHhHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh
Q 047359 19 LDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSGKF 98 (440)
Q Consensus 19 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 98 (440)
...+.+.|++++|.+.++.+.+.. +.+...+..+...+...|++++|...++...+.. +.+..+|..+...+.+.|++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 445667777888888777777654 3345556666667777777777777777776653 34566777777777777777
Q ss_pred HHHHHHHhccc---CC-chhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCchh-hHHHHHHHHHhcCChhhHHHHHHH
Q 047359 99 EVVLGLLDSGI---YS-SVMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFS-TYSSILDGARRYEKTEVSDRIVGL 173 (440)
Q Consensus 99 ~~a~~~~~~~~---~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~ 173 (440)
++|...|+++. |+ ..+|..+..++.+.|++++|.+.|+++.+ ..|+.. .+..+...+...|++++|.+.|++
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQ---YNPDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHH---HCTTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 77777776655 33 33466666666666666666666666655 334433 444555566666666666666666
Q ss_pred HHhcCCCCcccccchHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCC
Q 047359 174 MVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITV 253 (440)
Q Consensus 174 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 253 (440)
+.+.. |+. ..++..+...+...|++++|...|+++.+.++. +...+..+...+...|++++|...+++..+..+.
T Consensus 161 al~~~--p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~- 235 (388)
T 1w3b_A 161 AIETQ--PNF-AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN- 235 (388)
T ss_dssp HHHHC--TTC-HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-
T ss_pred HHHhC--CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-
Confidence 66543 332 455666666666666666666666666655433 4455555666666666666666666665554322
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHH
Q 047359 254 RDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLME 333 (440)
Q Consensus 254 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 333 (440)
+..++..+...+...|++++|...++.+.+.+ +.+..++..+...+.+.|++++|...++++.+..+ .+..++..+..
T Consensus 236 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~ 313 (388)
T 1w3b_A 236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP-THADSLNNLAN 313 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHH
Confidence 34555556666666666666666666665543 22344555566666666666666666666655432 24555556666
Q ss_pred HHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcc
Q 047359 334 YYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLK 408 (440)
Q Consensus 334 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 408 (440)
.+...|++++|.+.++++.+..+ .+..++..+...+.+.|++++|.+.|+++.+..|..+.++..+...+...|
T Consensus 314 ~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 314 IKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHTTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred HHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHcc
Confidence 66666666666666666655322 234555566666666666666666666666655555555555555554443
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=3.4e-30 Score=230.30 Aligned_cols=362 Identities=13% Similarity=0.095 Sum_probs=319.9
Q ss_pred HHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhccc----CCchhHHHHHHHHHhcCChh
Q 047359 54 LDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSGKFEVVLGLLDSGI----YSSVMYNLVIDFYSKKGDFG 129 (440)
Q Consensus 54 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~li~~~~~~~~~~ 129 (440)
...+.+.|++++|.+.++.+.+.. +.+...+..+...+...|++++|...++... .+..+|..+..++.+.|+++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 456778899999999999998764 3356677788888999999999999998876 45678999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCc-hhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCcccccchHHHHHHHhhcCcHHHHHHHH
Q 047359 130 AAFDRLNEMCNGRNLTPG-FSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIF 208 (440)
Q Consensus 130 ~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 208 (440)
+|.+.|+++.+ ..|+ ..+|..+..++.+.|++++|.+.++++.+.. |+. ...+..+...+...|++++|.+.|
T Consensus 85 ~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~-~~~~~~l~~~~~~~g~~~~A~~~~ 158 (388)
T 1w3b_A 85 EAIEHYRHALR---LKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN--PDL-YCVRSDLGNLLKALGRLEEAKACY 158 (388)
T ss_dssp HHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--TTC-THHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHH---cCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCc-HHHHHHHHHHHHHccCHHHHHHHH
Confidence 99999999987 5565 4579999999999999999999999999865 553 667788899999999999999999
Q ss_pred HHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 047359 209 KRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIP 288 (440)
Q Consensus 209 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 288 (440)
+++.+..+. +..+|..+...+...|++++|...|+++.+.++. +...+..+...+...|++++|...++...+.. +.
T Consensus 159 ~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~ 235 (388)
T 1w3b_A 159 LKAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PN 235 (388)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TT
T ss_pred HHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cC
Confidence 999987654 6788999999999999999999999999987654 56788899999999999999999999998864 34
Q ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHH
Q 047359 289 CAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLD 368 (440)
Q Consensus 289 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 368 (440)
+..++..+...+...|++++|...++++.+..+. +..++..+...+.+.|++++|.+.++++.+..+ .+..++..+..
T Consensus 236 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~ 313 (388)
T 1w3b_A 236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLCP-THADSLNNLAN 313 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHH
Confidence 5778899999999999999999999999987644 677899999999999999999999999998743 47889999999
Q ss_pred HHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcccHHHHHHHHHHHHHCCCCCCH
Q 047359 369 GLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDE 429 (440)
Q Consensus 369 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 429 (440)
.+.+.|++++|.+.++++.+..|.+..++..++..+.+.|++++|...++++.+ +.|+.
T Consensus 314 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~ 372 (388)
T 1w3b_A 314 IKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTF 372 (388)
T ss_dssp HHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTC
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCC
Confidence 999999999999999999998888899999999999999999999999999998 56654
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=2.9e-32 Score=247.29 Aligned_cols=205 Identities=12% Similarity=0.165 Sum_probs=141.4
Q ss_pred HHHHHHHHHhcCCCCcccccchHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhc---------cHH
Q 047359 167 SDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEG---------RVK 237 (440)
Q Consensus 167 a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---------~~~ 237 (440)
+..+.+.+.+.+..+.. ...++.+|++|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.+ +++
T Consensus 9 ~e~L~~~~~~k~~~~sp-e~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSP-EALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ---------------CH-HHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred HHHHHHHHHHhcccCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 33444455444443321 23456667777777777777777777777777777777777777776543 356
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 047359 238 EAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVL 317 (440)
Q Consensus 238 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 317 (440)
.|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred hcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHh
Q 047359 318 DKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFK 372 (440)
Q Consensus 318 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 372 (440)
+.|+.||..+|+.+|.+|++.|+.++|.+++++|.+.|..|+..||+.++..|..
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 7777777777777777777777777777777777777777777777777777664
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=8.5e-32 Score=244.29 Aligned_cols=206 Identities=13% Similarity=0.171 Sum_probs=179.7
Q ss_pred HHHHHHHHHHhcCCCCCH-HhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC---------hH
Q 047359 203 AAEMIFKRACDEKIELQD-DTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQ---------PE 272 (440)
Q Consensus 203 ~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~ 272 (440)
.+..+.+.+.+.+..+.+ ..++.+|.+|++.|++++|+++|++|.+.|+.||..+|+.+|.+|++.+. .+
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 455666777777665544 46888999999999999999999999999999999999999999987665 67
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHH
Q 047359 273 EVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIE 352 (440)
Q Consensus 273 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 352 (440)
+|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCC-chhhHHHHHHHHHhcc
Q 047359 353 KLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVV-SSSSFVIVVSRLCHLK 408 (440)
Q Consensus 353 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g 408 (440)
+.|+.||..+|++|+.+|++.|+.++|.++|++|++.+.. +..+|+.++..|...+
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~ 224 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEV 224 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHH
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999988 8999999999887643
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.2e-26 Score=215.51 Aligned_cols=411 Identities=10% Similarity=-0.044 Sum_probs=328.8
Q ss_pred hHhHHHHHHHHHccCCcchHHHHHHHHHhcCCccChHhHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 047359 12 SDALSLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQI 91 (440)
Q Consensus 12 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 91 (440)
...+......+.+.|++++|+..|+++.+.. |+..+|..+..++.+.|++++|.+.++++.+.+ +.+..++..+..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 4567778889999999999999999999875 789999999999999999999999999998875 3467789999999
Q ss_pred HHhcCChHHHHHHHhccc---C-CchhHHHHHHHHHhcCChhHHHHHHHH------------------------------
Q 047359 92 LCRSGKFEVVLGLLDSGI---Y-SSVMYNLVIDFYSKKGDFGAAFDRLNE------------------------------ 137 (440)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~---~-~~~~~~~li~~~~~~~~~~~a~~~~~~------------------------------ 137 (440)
+...|++++|...|+++. | +......++..+........+.+.+..
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred HHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence 999999999999999876 2 333344444443332222222222211
Q ss_pred -----HhcCCCCC--------C-chhhHHHHHHHHHh---cCChhhHHHHHHHHHh-----cCCCCc------ccccchH
Q 047359 138 -----MCNGRNLT--------P-GFSTYSSILDGARR---YEKTEVSDRIVGLMVE-----KKLLPK------HFLSGND 189 (440)
Q Consensus 138 -----~~~~~~~~--------p-~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~~~~------~~~~~~~ 189 (440)
+.. .... | +...+......+.. .|++++|...++++.+ ....|+ .....+.
T Consensus 163 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 163 SMASFFGI-FKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHTT-SCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHhh-cCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 100 0000 1 13344444444444 8999999999999988 321222 1156778
Q ss_pred HHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 047359 190 YVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEH 269 (440)
Q Consensus 190 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 269 (440)
.+...+...|++++|...++++.+..+. ...+..+..++...|++++|...++.+.+.... +...+..+...+...|
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhC
Confidence 8899999999999999999999887655 888999999999999999999999999887543 6678889999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHH
Q 047359 270 QPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHI 349 (440)
Q Consensus 270 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 349 (440)
++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+..+. +...+..+...+...|++++|...++
T Consensus 319 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~ 396 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKALKQYD 396 (514)
T ss_dssp CTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999998864 345678888999999999999999999999887543 67788899999999999999999999
Q ss_pred HHHhccCC-cC----HHhHHHHHHHHHh---cCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcccHHHHHHHHHHHH
Q 047359 350 KIEKLKGS-LD----VATYDVLLDGLFK---DGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLKELRKAMKNHDEML 421 (440)
Q Consensus 350 ~~~~~~~~-p~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 421 (440)
++.+.... ++ ...+..+...+.. .|++++|.+.++++.+..+.++.++..+...+.+.|++++|...++++.
T Consensus 397 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 476 (514)
T 2gw1_A 397 LAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESA 476 (514)
T ss_dssp HHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 99875432 12 3388899999999 9999999999999999988889999999999999999999999999999
Q ss_pred HCCCCCCHHHHH
Q 047359 422 KMGHKPDEATYK 433 (440)
Q Consensus 422 ~~~~~p~~~t~~ 433 (440)
+ +.|+.....
T Consensus 477 ~--~~~~~~~~~ 486 (514)
T 2gw1_A 477 D--LARTMEEKL 486 (514)
T ss_dssp H--HCSSHHHHH
T ss_pred H--hccccHHHH
Confidence 8 467655433
No 8
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.96 E-value=1.7e-25 Score=208.87 Aligned_cols=407 Identities=9% Similarity=-0.002 Sum_probs=317.7
Q ss_pred hHhHHHHHHHHHccCCcchHHHHHHHHHhcCCccChHhHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 047359 12 SDALSLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQI 91 (440)
Q Consensus 12 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 91 (440)
...|..+...+.+.|++++|++.|+.+.+.. +.+..++..+..++.+.|++++|.+.|+++.+.+ +.+..++..+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 4667788899999999999999999999876 4578899999999999999999999999998875 3467889999999
Q ss_pred HHhcCChHHHHHHHhcccCCchhHHHHHHHHHhcCChhHHHHHHHHHhcC-----CCCCCchhh----------------
Q 047359 92 LCRSGKFEVVLGLLDSGIYSSVMYNLVIDFYSKKGDFGAAFDRLNEMCNG-----RNLTPGFST---------------- 150 (440)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~~~p~~~~---------------- 150 (440)
+...|++++|...|+.+..+....+..+..+...+...+|...++++... ....|+...
T Consensus 103 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSS 182 (537)
T ss_dssp HHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHH
Confidence 99999999999999755533333334455566666677888888887541 011122111
Q ss_pred --------------HHHHHHHHH--------hcCChhhHHHHHHHHHhcCCCCccc------ccchHHHHHHHhhcCcHH
Q 047359 151 --------------YSSILDGAR--------RYEKTEVSDRIVGLMVEKKLLPKHF------LSGNDYVIQKLSDMGKTY 202 (440)
Q Consensus 151 --------------~~~l~~~~~--------~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~ 202 (440)
...+...+. ..|++++|..+++.+.+.. |++. ..++..+...+...|+++
T Consensus 183 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~ 260 (537)
T 3fp2_A 183 VNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFLKNNLL 260 (537)
T ss_dssp SCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHhcccHH
Confidence 111111111 1247889999999988765 4320 124666778889999999
Q ss_pred HHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 047359 203 AAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVV 282 (440)
Q Consensus 203 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 282 (440)
+|...+++..+..+ +...+..+...+...|++++|...++++.+.... +..++..+...+...|++++|...++.+.
T Consensus 261 ~A~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 337 (537)
T 3fp2_A 261 DAQVLLQESINLHP--TPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKEDFQKAQ 337 (537)
T ss_dssp HHHHHHHHHHHHCC--CHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC--CchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 99999999998754 4788889999999999999999999999887643 67789999999999999999999999998
Q ss_pred HcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCc----
Q 047359 283 ERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSL---- 358 (440)
Q Consensus 283 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p---- 358 (440)
+.. +.+...+..+...+...|++++|...++++.+..+. +...+..+...+...|++++|.+.++++.+.....
T Consensus 338 ~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 415 (537)
T 3fp2_A 338 SLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT-LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIH 415 (537)
T ss_dssp HHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCS
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhH
Confidence 864 345678889999999999999999999999887544 67788899999999999999999999998754221
Q ss_pred -CHHhHHHHHHHHHhc----------CcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcccHHHHHHHHHHHHHCCCCC
Q 047359 359 -DVATYDVLLDGLFKD----------GRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLKELRKAMKNHDEMLKMGHKP 427 (440)
Q Consensus 359 -~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p 427 (440)
....+..+...+... |++++|...|+++.+..|.++.++..+...+.+.|++++|.+.|+++.+ +.|
T Consensus 416 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~~ 493 (537)
T 3fp2_A 416 VGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI--LAR 493 (537)
T ss_dssp STTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HC-
T ss_pred HHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCC
Confidence 112244555677777 9999999999999999988899999999999999999999999999988 345
Q ss_pred CH
Q 047359 428 DE 429 (440)
Q Consensus 428 ~~ 429 (440)
+.
T Consensus 494 ~~ 495 (537)
T 3fp2_A 494 TM 495 (537)
T ss_dssp -C
T ss_pred Cc
Confidence 43
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.95 E-value=8.3e-25 Score=199.49 Aligned_cols=310 Identities=14% Similarity=0.043 Sum_probs=186.2
Q ss_pred cChHhHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhccc----CCchhHHHHHH
Q 047359 45 PAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSGKFEVVLGLLDSGI----YSSVMYNLVID 120 (440)
Q Consensus 45 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~li~ 120 (440)
.+...+..+...+.+.|++++|..+|+++.+.. +.+..++..+..++...|++++|...|+++. .+..++..+..
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 102 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 455666666667777777777777777766542 3356666666677777777777777776655 23455666777
Q ss_pred HHHhcCChhHHHHHHHHHhcCCCCCCch----hhHHHH------------HHHHHhcCChhhHHHHHHHHHhcCCCCccc
Q 047359 121 FYSKKGDFGAAFDRLNEMCNGRNLTPGF----STYSSI------------LDGARRYEKTEVSDRIVGLMVEKKLLPKHF 184 (440)
Q Consensus 121 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~----~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 184 (440)
+|.+.|++++|.+.|+++.+ ..|+. ..+..+ ...+.+.|++++|...++.+.+.. |+.
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~- 176 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLK---SNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC--VWD- 176 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTC-
T ss_pred HHHHcCCHHHHHHHHHHHHh---cCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCC-
Confidence 77777777777777777765 33432 333333 333566667777777776666543 322
Q ss_pred ccchHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHH---
Q 047359 185 LSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAF--- 261 (440)
Q Consensus 185 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--- 261 (440)
...+..++.+|.+.|++++|...|+++.+..+. +..++..+..+|...|++++|...|+++.+.... +...+..+
T Consensus 177 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~ 254 (450)
T 2y4t_A 177 AELRELRAECFIKEGEPRKAISDLKAASKLKND-NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQV 254 (450)
T ss_dssp HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHH
Confidence 555666666666677777777766666654332 4566666666666777777777777666654322 22233222
Q ss_pred ---------HHHHHhcCChHHHHHHHHHHHHcCCCCC-----hhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhh
Q 047359 262 ---------VNVLCKEHQPEEVCGLLRDVVERGYIPC-----AMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFC 327 (440)
Q Consensus 262 ---------~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 327 (440)
...+...|++++|...++.+.+.. |+ ...+..+...+.+.|++++|...++++.+..+. +...
T Consensus 255 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~ 331 (450)
T 2y4t_A 255 KKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPD-NVNA 331 (450)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHH
Confidence 555666666666666666666542 22 234555666666666666666666666554322 4556
Q ss_pred hHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHH
Q 047359 328 CSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLL 367 (440)
Q Consensus 328 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 367 (440)
|..+..+|...|++++|...++++.+..+. +...+..+.
T Consensus 332 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 370 (450)
T 2y4t_A 332 LKDRAEAYLIEEMYDEAIQDYETAQEHNEN-DQQIREGLE 370 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 666666666666666666666666654222 333444443
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.95 E-value=1.3e-24 Score=198.20 Aligned_cols=345 Identities=10% Similarity=0.070 Sum_probs=277.6
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhccc----CCchhHHHHHHHHHhcCChhHHHHHHHHHhcC
Q 047359 66 ASCLYGAMVRDGVSPNKFTWSLVAQILCRSGKFEVVLGLLDSGI----YSSVMYNLVIDFYSKKGDFGAAFDRLNEMCNG 141 (440)
Q Consensus 66 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 141 (440)
+...+..+.... +.+...+..+...+.+.|++++|..+|+++. .+..+|..+..++...|++++|...|+++.+
T Consensus 11 ~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~- 88 (450)
T 2y4t_A 11 VDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQ- 88 (450)
T ss_dssp -------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred cccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-
Confidence 334444444332 4467789999999999999999999999877 4667899999999999999999999999987
Q ss_pred CCCCC-chhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCcccc---cchHHH------------HHHHhhcCcHHHHH
Q 047359 142 RNLTP-GFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFL---SGNDYV------------IQKLSDMGKTYAAE 205 (440)
Q Consensus 142 ~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~~~a~ 205 (440)
..| +...+..+..++.+.|++++|...|+++.+.. |+. . ..+..+ ...+...|++++|.
T Consensus 89 --~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~ 163 (450)
T 2y4t_A 89 --LKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN--PSE-NEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAI 163 (450)
T ss_dssp --HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--CCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred --cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCC-hhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 334 46688899999999999999999999998864 442 3 444444 45589999999999
Q ss_pred HHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 047359 206 MIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERG 285 (440)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 285 (440)
..++++.+..+. +...+..+..+|.+.|++++|...|+++.+... .+..++..+...+...|++++|...++.+.+..
T Consensus 164 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 241 (450)
T 2y4t_A 164 AFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLD 241 (450)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999887654 778899999999999999999999999988653 367889999999999999999999999998763
Q ss_pred CCCChhhHHHH------------HHHHHcCCCHHHHHHHHHHHHhcCCCCc----hhhhHHHHHHHHcCCcHHHHHHHHH
Q 047359 286 YIPCAMELSRF------------VASQCGKGKWKEVEELLSAVLDKGLLLD----SFCCSSLMEYYCSNRQIDKAIALHI 349 (440)
Q Consensus 286 ~~~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~ 349 (440)
+.+...+..+ ...+...|++++|...++++.+..+. + ...+..+...+.+.|++++|...++
T Consensus 242 -p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 319 (450)
T 2y4t_A 242 -QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRVCS 319 (450)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred -CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 2233444444 78888999999999999999886433 2 3478888999999999999999999
Q ss_pred HHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHH------------HHhcc-----cHHH
Q 047359 350 KIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSR------------LCHLK-----ELRK 412 (440)
Q Consensus 350 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~------------~~~~g-----~~~~ 412 (440)
++.+..+. +...|..+..+|...|++++|...++++.+..|.++.++..+..+ |...| +.++
T Consensus 320 ~a~~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~ 398 (450)
T 2y4t_A 320 EVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQE 398 (450)
T ss_dssp HHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTH
T ss_pred HHHHhCcc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHH
Confidence 99886432 678999999999999999999999999999988888888887743 44444 5677
Q ss_pred HHHHHHH-HHH
Q 047359 413 AMKNHDE-MLK 422 (440)
Q Consensus 413 a~~~~~~-m~~ 422 (440)
+.+.+++ .++
T Consensus 399 ~~~~y~~~~l~ 409 (450)
T 2y4t_A 399 IIKAYRKLALQ 409 (450)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 7888886 444
No 11
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=5.7e-24 Score=197.37 Aligned_cols=382 Identities=9% Similarity=-0.053 Sum_probs=306.8
Q ss_pred CCChHhHHHHHHHHHccCCcchHHHHHHHHHhcCCccChHhHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHH
Q 047359 9 DSQSDALSLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLV 88 (440)
Q Consensus 9 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 88 (440)
.|+..+|..+..++.+.|++++|+..|+.+.+.+ +.+..++..+..++.+.|++++|...|+.+.+.+ +++......+
T Consensus 36 ~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~ 113 (514)
T 2gw1_A 36 KEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNG-DFNDASIEPM 113 (514)
T ss_dssp CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHH
T ss_pred CccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCccchHHHH
Confidence 3789999999999999999999999999999876 4567899999999999999999999999998876 3344444444
Q ss_pred HHHHHhcCChHHHHHHHh--------------------------------------ccc-----------CCchhHHHHH
Q 047359 89 AQILCRSGKFEVVLGLLD--------------------------------------SGI-----------YSSVMYNLVI 119 (440)
Q Consensus 89 ~~~~~~~~~~~~a~~~~~--------------------------------------~~~-----------~~~~~~~~li 119 (440)
+..+........+.+.+. ... .+...+....
T Consensus 114 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (514)
T 2gw1_A 114 LERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNG 193 (514)
T ss_dssp HHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHH
Confidence 444444332222222221 111 0133344444
Q ss_pred HHHHh---cCChhHHHHHHHHHhc-----CCCC-------CCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCccc
Q 047359 120 DFYSK---KGDFGAAFDRLNEMCN-----GRNL-------TPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHF 184 (440)
Q Consensus 120 ~~~~~---~~~~~~a~~~~~~~~~-----~~~~-------~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 184 (440)
..+.. .|++++|...|+++.+ .... +.+...+..+...+...|++++|...++.+.+.. |+
T Consensus 194 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~-- 269 (514)
T 2gw1_A 194 LSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PR-- 269 (514)
T ss_dssp HHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CC--
T ss_pred HHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cc--
Confidence 44554 8999999999999865 1111 1234577888889999999999999999999865 55
Q ss_pred ccchHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 047359 185 LSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNV 264 (440)
Q Consensus 185 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 264 (440)
...+..+...+...|++++|...++++.+..+. +...+..+...+...|++++|...+++..+.... +...+..+...
T Consensus 270 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~ 347 (514)
T 2gw1_A 270 VNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACL 347 (514)
T ss_dssp HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHH
Confidence 678888999999999999999999999887654 6778999999999999999999999999987654 56788889999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCC-c----hhhhHHHHHHHHc--
Q 047359 265 LCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLL-D----SFCCSSLMEYYCS-- 337 (440)
Q Consensus 265 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~-- 337 (440)
+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+..... + ...+..+...+..
T Consensus 348 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 426 (514)
T 2gw1_A 348 AYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNP 426 (514)
T ss_dssp TTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSC
T ss_pred HHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhh
Confidence 999999999999999998764 3456788899999999999999999999997653321 1 3378889999999
Q ss_pred -CCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHH
Q 047359 338 -NRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIV 400 (440)
Q Consensus 338 -~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 400 (440)
.|++++|...++++.+.... +..++..+...|.+.|++++|...|+++.+..+.++..+..+
T Consensus 427 ~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 427 TVENFIEATNLLEKASKLDPR-SEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp CTTHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence 99999999999999987543 677889999999999999999999999999988877666554
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.92 E-value=1.6e-21 Score=172.10 Aligned_cols=304 Identities=12% Similarity=0.039 Sum_probs=179.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhcCCCCCC-chhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCcccccchHHHHH
Q 047359 115 YNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTP-GFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQ 193 (440)
Q Consensus 115 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~ 193 (440)
+..+...+...|++++|+..|+++.+ ..| +...+..+..++...|++++|...++.+.+.. |+. ...+..+..
T Consensus 6 ~~~~~~~~~~~g~~~~A~~~~~~~l~---~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~-~~~~~~l~~ 79 (359)
T 3ieg_A 6 HLELGKKLLAAGQLADALSQFHAAVD---GDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK--MDF-TAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTC-HHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh---hCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCc-chHHHHHHH
Confidence 44444445555555555555555443 122 23344444555555555555555555554432 221 344445555
Q ss_pred HHhhcCcHHHHHHHHHHHHhcCCC--CCHHhHHHH------------HHHHhhhccHHHHHHHHHHHHHcCCCCChhhHH
Q 047359 194 KLSDMGKTYAAEMIFKRACDEKIE--LQDDTCGCM------------LKALSKEGRVKEAIQIYHLISERGITVRDSDYY 259 (440)
Q Consensus 194 ~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 259 (440)
.+...|++++|...++++.+..+. .+...+..+ ...+...|++++|...++++.+..+. +...+.
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ 158 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVW-DAELRE 158 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-chHHHH
Confidence 555555555555555555443220 022222222 45566667777777777776665432 455666
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhH----------
Q 047359 260 AFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCS---------- 329 (440)
Q Consensus 260 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---------- 329 (440)
.+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...+++..+..+. +...+.
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~ 236 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNK 236 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHHH
Confidence 66666677777777777777666543 345556666666666677777777777766655332 222222
Q ss_pred --HHHHHHHcCCcHHHHHHHHHHHHhccCCcCH----HhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHH
Q 047359 330 --SLMEYYCSNRQIDKAIALHIKIEKLKGSLDV----ATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSR 403 (440)
Q Consensus 330 --~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 403 (440)
.+...+...|++++|...++++.+.... +. ..+..+...+...|++++|...++++.+..|.++.++..+...
T Consensus 237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 315 (359)
T 3ieg_A 237 LIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEA 315 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 2245577778888888888877765433 22 2344566777788888888888888887777777788888888
Q ss_pred HHhcccHHHHHHHHHHHHHCCCCCCHH
Q 047359 404 LCHLKELRKAMKNHDEMLKMGHKPDEA 430 (440)
Q Consensus 404 ~~~~g~~~~a~~~~~~m~~~~~~p~~~ 430 (440)
+...|++++|...++++.+ +.|+..
T Consensus 316 ~~~~g~~~~A~~~~~~a~~--~~p~~~ 340 (359)
T 3ieg_A 316 YLIEEMYDEAIQDYEAAQE--HNENDQ 340 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHT--TCTTCH
T ss_pred HHHcCCHHHHHHHHHHHHh--cCCCCh
Confidence 8888888888888888877 456543
No 13
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.92 E-value=2.3e-21 Score=180.89 Aligned_cols=371 Identities=10% Similarity=-0.011 Sum_probs=284.4
Q ss_pred CCChHhHHHHHHHHHccCCcchHHHHHHHHHhcCCccChHhHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHH
Q 047359 9 DSQSDALSLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLV 88 (440)
Q Consensus 9 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 88 (440)
+.++.+|..+..++.+.|++++|++.|+.+.+.+ +.+..++..+...+...|++++|...|+.+ .. .|+.. ...
T Consensus 56 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~-~~--~~~~~--~~~ 129 (537)
T 3fp2_A 56 PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTDAMFDLSVL-SL--NGDFD--GAS 129 (537)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH-C-------------
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHHHHHHHHHH-hc--CCCCC--hHH
Confidence 4577899999999999999999999999999876 457888999999999999999999999744 22 22221 112
Q ss_pred HHHHHhcCChHHHHHHHhccc-------------------------------------CCch----hHHHHHHHHHh---
Q 047359 89 AQILCRSGKFEVVLGLLDSGI-------------------------------------YSSV----MYNLVIDFYSK--- 124 (440)
Q Consensus 89 ~~~~~~~~~~~~a~~~~~~~~-------------------------------------~~~~----~~~~li~~~~~--- 124 (440)
+..+...+....|...++++. .... ....+...+..
T Consensus 130 ~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 209 (537)
T 3fp2_A 130 IEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDE 209 (537)
T ss_dssp --CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhh
Confidence 223333334445555554442 1111 12222222221
Q ss_pred -----cCChhHHHHHHHHHhcCCCCCCc--------hhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCcccccchHHH
Q 047359 125 -----KGDFGAAFDRLNEMCNGRNLTPG--------FSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYV 191 (440)
Q Consensus 125 -----~~~~~~a~~~~~~~~~~~~~~p~--------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 191 (440)
.|++++|..+|+++.+ ..|+ ..++..+...+...|++++|...++.+.+.. |+ ...+..+
T Consensus 210 ~~~~a~~~~~~A~~~~~~~l~---~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~--~~~~~~l 282 (537)
T 3fp2_A 210 GYLVANDLLTKSTDMYHSLLS---ANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PT--PNSYIFL 282 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CC--HHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHH---HCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CC--chHHHHH
Confidence 2588999999999987 4454 2346667778889999999999999999865 66 6788889
Q ss_pred HHHHhhcCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh
Q 047359 192 IQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQP 271 (440)
Q Consensus 192 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 271 (440)
...+...|++++|...++++.+..+. +..++..+...+...|++++|...+++..+.... +...+..+...+...|++
T Consensus 283 ~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~ 360 (537)
T 3fp2_A 283 ALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE-NVYPYIQLACLLYKQGKF 360 (537)
T ss_dssp HHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CSHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCH
Confidence 99999999999999999999887654 6788999999999999999999999999987643 567888999999999999
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCC-----chhhhHHHHHHHHcC--------
Q 047359 272 EEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLL-----DSFCCSSLMEYYCSN-------- 338 (440)
Q Consensus 272 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~-------- 338 (440)
++|...++.+.+.. +.+...+..+...+...|++++|...++++.+..+.. ....+......+...
T Consensus 361 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 439 (537)
T 3fp2_A 361 TESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQL 439 (537)
T ss_dssp HHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----C
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhh
Confidence 99999999998874 4456788899999999999999999999987653221 111233445667777
Q ss_pred --CcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhh
Q 047359 339 --RQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSS 396 (440)
Q Consensus 339 --~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 396 (440)
|++++|...++++.+..+. +...+..+...|.+.|++++|.+.|+++.+..+.+...
T Consensus 440 ~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 498 (537)
T 3fp2_A 440 DEEKFNAAIKLLTKACELDPR-SEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEK 498 (537)
T ss_dssp CHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHH
T ss_pred hHhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 9999999999999987543 67889999999999999999999999999988775544
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.92 E-value=3.1e-21 Score=170.20 Aligned_cols=329 Identities=12% Similarity=0.086 Sum_probs=223.2
Q ss_pred ChHhHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhccc---C-CchhHHHHHHH
Q 047359 46 AVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSGKFEVVLGLLDSGI---Y-SSVMYNLVIDF 121 (440)
Q Consensus 46 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~-~~~~~~~li~~ 121 (440)
++..+..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|...+++.. | +...+..+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 45667788888888999999999999987764 3467778888888888888888888888766 3 45667778888
Q ss_pred HHhcCChhHHHHHHHHHhcCCCCCC---c-hhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCcccccchHHHHHHHhh
Q 047359 122 YSKKGDFGAAFDRLNEMCNGRNLTP---G-FSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSD 197 (440)
Q Consensus 122 ~~~~~~~~~a~~~~~~~~~~~~~~p---~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 197 (440)
+...|++++|...|++..+ ..| + ...+..+..... ...+..+...+..
T Consensus 81 ~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~-------------------------~~~~~~~a~~~~~ 132 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLK---SNPSEQEEKEAESQLVKADE-------------------------MQRLRSQALDAFD 132 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHh---cCCcccChHHHHHHHHHHHH-------------------------HHHHHHHHHHHHH
Confidence 8888888888888888866 445 3 223333311000 0111223445555
Q ss_pred cCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHH
Q 047359 198 MGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGL 277 (440)
Q Consensus 198 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 277 (440)
.|++++|...++++.+..+. +...+..+...+...|++++|...++.+.+..+. +...+..+...+...|++++|...
T Consensus 133 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~ 210 (359)
T 3ieg_A 133 GADYTAAITFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLKSD-NTEAFYKISTLYYQLGDHELSLSE 210 (359)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSC-CHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Confidence 56666666666655554332 4455555666666666666666666666554322 445555666666666666666666
Q ss_pred HHHHHHcCCCCChhhH------------HHHHHHHHcCCCHHHHHHHHHHHHhcCCCCch----hhhHHHHHHHHcCCcH
Q 047359 278 LRDVVERGYIPCAMEL------------SRFVASQCGKGKWKEVEELLSAVLDKGLLLDS----FCCSSLMEYYCSNRQI 341 (440)
Q Consensus 278 ~~~~~~~~~~~~~~~~------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~ 341 (440)
++...+.. +.+...+ ..+...+...|++++|...++++.+..+. +. ..+..+...+...|++
T Consensus 211 ~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~ 288 (359)
T 3ieg_A 211 VRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKP 288 (359)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCH
Confidence 66665542 1112211 12355677889999999999998876543 22 2344577788999999
Q ss_pred HHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcc
Q 047359 342 DKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLK 408 (440)
Q Consensus 342 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 408 (440)
++|.+.+++..+..+. +..++..+...+...|++++|.+.|+++.+..|.++..+..+..+....+
T Consensus 289 ~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 289 VEAIRICSEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLK 354 (359)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 9999999999886433 67889999999999999999999999999998888888777776655443
No 15
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.90 E-value=1.2e-19 Score=168.44 Aligned_cols=404 Identities=10% Similarity=0.045 Sum_probs=296.8
Q ss_pred CCChHhHHHHHHHHHccCCcchHHHHHHHHHhcCCccChHhHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHH
Q 047359 9 DSQSDALSLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLV 88 (440)
Q Consensus 9 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 88 (440)
+-|...|..++.. .+.|++++|..+|+++.+.. |.+...|...+..+.+.|++++|..+|+++++. .|+...|...
T Consensus 10 P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~ 85 (530)
T 2ooe_A 10 PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCY 85 (530)
T ss_dssp TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHH
T ss_pred CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHH
Confidence 4467889999984 78999999999999999864 557788999999999999999999999999886 4687788777
Q ss_pred HHHH-HhcCChHHHHH----HHhccc-------CCchhHHHHHHHHHh---------cCChhHHHHHHHHHhcCCCCCCc
Q 047359 89 AQIL-CRSGKFEVVLG----LLDSGI-------YSSVMYNLVIDFYSK---------KGDFGAAFDRLNEMCNGRNLTPG 147 (440)
Q Consensus 89 ~~~~-~~~~~~~~a~~----~~~~~~-------~~~~~~~~li~~~~~---------~~~~~~a~~~~~~~~~~~~~~p~ 147 (440)
+... ...|+.+.|.+ +|++.. ++...|...+....+ .|++++|..+|++..+ ....+.
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~P~~~~ 164 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-NPMINI 164 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-SCCTTH
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-chhhhH
Confidence 7533 45677776655 666543 345678777776655 7899999999999976 322211
Q ss_pred hhhHHHHHHHH-------------HhcCChhhHHHHHHHHH------hcC---CCCcc------cccchHHHHHHHhhc-
Q 047359 148 FSTYSSILDGA-------------RRYEKTEVSDRIVGLMV------EKK---LLPKH------FLSGNDYVIQKLSDM- 198 (440)
Q Consensus 148 ~~~~~~l~~~~-------------~~~~~~~~a~~~~~~~~------~~~---~~~~~------~~~~~~~l~~~~~~~- 198 (440)
...|....... .+.++++.|..++.... +.. +.|+. ....|...+......
T Consensus 165 ~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~ 244 (530)
T 2ooe_A 165 EQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNP 244 (530)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCC
Confidence 23443322211 12345667777666532 221 22321 012344333332221
Q ss_pred ---CcH----HHHHHHHHHHHhcCCCCCHHhHHHHHHHHhh-------hccHH-------HHHHHHHHHHHcCCCCChhh
Q 047359 199 ---GKT----YAAEMIFKRACDEKIELQDDTCGCMLKALSK-------EGRVK-------EAIQIYHLISERGITVRDSD 257 (440)
Q Consensus 199 ---~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~ 257 (440)
++. ..+..+|++.....+. ++..|..+...+.+ .|+++ +|..+|++..+.-.+.+...
T Consensus 245 ~~~~~~~~~~~~a~~~y~~al~~~p~-~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l 323 (530)
T 2ooe_A 245 LRTEDQTLITKRVMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLL 323 (530)
T ss_dssp SCCSCSHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHH
T ss_pred ccCCcchhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHH
Confidence 232 4777889988876544 67888888888775 68877 89999999987322336788
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh--hhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHH-
Q 047359 258 YYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCA--MELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEY- 334 (440)
Q Consensus 258 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~- 334 (440)
|..++..+.+.|++++|..+++.+.+. .|+. ..|..++..+.+.|++++|.++|++..+.... +...+......
T Consensus 324 ~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~ 400 (530)
T 2ooe_A 324 YFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALME 400 (530)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHH
Confidence 899999999999999999999999985 4542 47888888888899999999999999876322 23333322222
Q ss_pred HHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchh----hHHHHHHHHHhcccH
Q 047359 335 YCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSS----SFVIVVSRLCHLKEL 410 (440)
Q Consensus 335 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~ 410 (440)
+...|+.++|..+|++..+..+. +...|..++..+.+.|+.++|..+|+++...++.++. .|...+......|+.
T Consensus 401 ~~~~~~~~~A~~~~e~al~~~p~-~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~ 479 (530)
T 2ooe_A 401 YYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDL 479 (530)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCH
T ss_pred HHHcCChhHHHHHHHHHHHHCCC-CHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 34689999999999999987543 6789999999999999999999999999988655443 788888888899999
Q ss_pred HHHHHHHHHHHH
Q 047359 411 RKAMKNHDEMLK 422 (440)
Q Consensus 411 ~~a~~~~~~m~~ 422 (440)
+.+..+.+++.+
T Consensus 480 ~~~~~~~~r~~~ 491 (530)
T 2ooe_A 480 ASILKVEKRRFT 491 (530)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999887
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.90 E-value=1.2e-20 Score=164.55 Aligned_cols=291 Identities=12% Similarity=0.007 Sum_probs=194.3
Q ss_pred CCchhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCC-chhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCcccccch
Q 047359 110 YSSVMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTP-GFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGN 188 (440)
Q Consensus 110 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 188 (440)
.+...+..+...+...|++++|.++|+++.+ ..| +...+..++.++...|++++|...++++.+.. |++ ...+
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~---~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~-~~~~ 93 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVME---KDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY--PSN-PVSW 93 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTS-THHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCC-HHHH
Confidence 5556667777777777777777777777765 223 33455556667777777777777777777653 332 5566
Q ss_pred HHHHHHHhhcC-cHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 047359 189 DYVIQKLSDMG-KTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCK 267 (440)
Q Consensus 189 ~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 267 (440)
..+...+...| ++++|...+++..+..+. +...|..+...+...|++++|...++++.+.... +...+..+...+..
T Consensus 94 ~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~ 171 (330)
T 3hym_B 94 FAVGCYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGL 171 (330)
T ss_dssp HHHHHHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHH
Confidence 67777777777 777777777777765443 4556777777777777777777777777765433 34555567777777
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCC--------CCchhhhHHHHHHHHcCC
Q 047359 268 EHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGL--------LLDSFCCSSLMEYYCSNR 339 (440)
Q Consensus 268 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~ 339 (440)
.|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+... ......+..+...|...|
T Consensus 172 ~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 250 (330)
T 3hym_B 172 TNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLK 250 (330)
T ss_dssp TTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTT
T ss_pred HhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhc
Confidence 777777777777776653 33456666777777777777777777777765311 223456666777777777
Q ss_pred cHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHH-HhcccH
Q 047359 340 QIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRL-CHLKEL 410 (440)
Q Consensus 340 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~ 410 (440)
++++|...+++..+.... +...+..+...+.+.|++++|.+.++++.+..|.++..+..+..++ ...|+.
T Consensus 251 ~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 251 KYAEALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp CHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred CHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 777777777777765433 5566677777777777777777777777777666666777776666 344443
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.90 E-value=2.4e-20 Score=162.50 Aligned_cols=277 Identities=12% Similarity=0.033 Sum_probs=197.4
Q ss_pred CCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCcccccchHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHhH
Q 047359 144 LTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTC 223 (440)
Q Consensus 144 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 223 (440)
...+...+..+...+...|++++|.++++++.+.. |++ ...+..++..+...|++++|...++++.+..+. +...+
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~-~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~ 93 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD--PFH-ASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSW 93 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTC-TTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCC-hhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHH
Confidence 34455566677777777788888888888777654 332 455666777777778888888888877776543 56677
Q ss_pred HHHHHHHhhhc-cHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHc
Q 047359 224 GCMLKALSKEG-RVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCG 302 (440)
Q Consensus 224 ~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 302 (440)
..+...+...| ++++|...|++..+.... +...+..+...+...|++++|...++.+.+.. +.+...+..+...+..
T Consensus 94 ~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~ 171 (330)
T 3hym_B 94 FAVGCYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGL 171 (330)
T ss_dssp HHHHHHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHH
Confidence 77777777777 788888888877766533 45667777777778888888888888777653 2344556667777777
Q ss_pred CCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccC--------CcCHHhHHHHHHHHHhcC
Q 047359 303 KGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKG--------SLDVATYDVLLDGLFKDG 374 (440)
Q Consensus 303 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------~p~~~~~~~l~~~~~~~g 374 (440)
.|++++|...++++.+..+. +...+..+...+...|++++|...++++.+... ..+..++..+...+...|
T Consensus 172 ~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 250 (330)
T 3hym_B 172 TNNSKLAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLK 250 (330)
T ss_dssp TTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTT
T ss_pred HhhHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhc
Confidence 78888888888877776543 566777777777888888888888877776421 223457777777788888
Q ss_pred cHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcccHHHHHHHHHHHHHCCCCCCH
Q 047359 375 RMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDE 429 (440)
Q Consensus 375 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 429 (440)
++++|...++++.+..+.++.++..+...+.+.|++++|.+.++++.+ +.|+.
T Consensus 251 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~ 303 (330)
T 3hym_B 251 KYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG--LRRDD 303 (330)
T ss_dssp CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT--TCSCC
T ss_pred CHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc--cCCCc
Confidence 888888888888777777777777788888888888888888877766 34543
No 18
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.89 E-value=1.4e-18 Score=159.76 Aligned_cols=349 Identities=12% Similarity=0.033 Sum_probs=183.5
Q ss_pred hHhHHHHHHHHHc----cCCcchHHHHHHHHHhcCCccChHhHHHHHHHHHh----ccchhHHHHHHHHHHHcCCCCChh
Q 047359 12 SDALSLVLDCYSH----KGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYR----QNEIRLASCLYGAMVRDGVSPNKF 83 (440)
Q Consensus 12 ~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~ 83 (440)
+..+..+-..|.. .+++++|+..|+...+.| +...+..+...+.. .+++++|.+.|++..+.| +..
T Consensus 39 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~ 112 (490)
T 2xm6_A 39 AKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQ 112 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence 3444444444544 555666666666555542 34455555555555 555666666666655543 344
Q ss_pred hHHHHHHHHHh----cCChHHHHHHHhccc--CCchhHHHHHHHHHh----cCChhHHHHHHHHHhcCCCCCCchhhHHH
Q 047359 84 TWSLVAQILCR----SGKFEVVLGLLDSGI--YSSVMYNLVIDFYSK----KGDFGAAFDRLNEMCNGRNLTPGFSTYSS 153 (440)
Q Consensus 84 ~~~~l~~~~~~----~~~~~~a~~~~~~~~--~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ 153 (440)
.+..|...|.. .+++++|...|++.. .+...+..+...|.. .+++++|++.|++..+ .+ +...+..
T Consensus 113 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~-~~---~~~a~~~ 188 (490)
T 2xm6_A 113 AQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAE-QG---NVWSCNQ 188 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-TT---CHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH-CC---CHHHHHH
Confidence 44555555555 455666666665544 334445555555554 4556666666665554 22 3444555
Q ss_pred HHHHHHh----cCChhhHHHHHHHHHhcCCCCcccccchHHHHHHHhh----cCcHHHHHHHHHHHHhcCCCCCHHhHHH
Q 047359 154 ILDGARR----YEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSD----MGKTYAAEMIFKRACDEKIELQDDTCGC 225 (440)
Q Consensus 154 l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 225 (440)
+...|.. .++.++|.+.+++..+.+ + ...+..+...|.. .+++++|..+|++..+.+ +...+..
T Consensus 189 Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~--~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~ 260 (490)
T 2xm6_A 189 LGYMYSRGLGVERNDAISAQWYRKSATSG---D--ELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFR 260 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C--HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHH
T ss_pred HHHHHhcCCCCCcCHHHHHHHHHHHHHCC---C--HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 5555554 555666666666555543 1 3344445555544 555666666666555432 2334444
Q ss_pred HHHHHhh----hccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCChhhHHHH
Q 047359 226 MLKALSK----EGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKE-----HQPEEVCGLLRDVVERGYIPCAMELSRF 296 (440)
Q Consensus 226 l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l 296 (440)
+...|.. .+++++|...|+...+.| +...+..+...+... +++++|...++...+.+ +...+..+
T Consensus 261 lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~l 334 (490)
T 2xm6_A 261 LGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANL 334 (490)
T ss_dssp HHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHH
Confidence 4444444 555666666666555543 233444455555444 55666666666555543 22344444
Q ss_pred HHHHHcCC---CHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHc----CCcHHHHHHHHHHHHhccCCcCHHhHHHHHHH
Q 047359 297 VASQCGKG---KWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCS----NRQIDKAIALHIKIEKLKGSLDVATYDVLLDG 369 (440)
Q Consensus 297 ~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 369 (440)
...|...| ++++|.+.+++..+.+ +...+..+...|.. .+++++|.+.|++..+.+ +...+..|...
T Consensus 335 g~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~ 408 (490)
T 2xm6_A 335 GAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEI 408 (490)
T ss_dssp HHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHH
Confidence 44444433 4555666666555542 34455555555555 556666666666655543 34455555555
Q ss_pred HHh----cCcHHHHHHHHHHHHHcC
Q 047359 370 LFK----DGRMEEAVRIFDYMKELK 390 (440)
Q Consensus 370 ~~~----~g~~~~a~~~~~~~~~~~ 390 (440)
|.. .++.++|...|++..+.+
T Consensus 409 y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 409 YYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 555 556666666666665555
No 19
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.89 E-value=5.3e-18 Score=155.90 Aligned_cols=364 Identities=10% Similarity=0.010 Sum_probs=304.5
Q ss_pred chHHHHHHHHHhcCCccChHhHHHHHHHHHh----ccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCChHH
Q 047359 29 MDGLEVYRMMRVYGFVPAVSACNALLDALYR----QNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILCR----SGKFEV 100 (440)
Q Consensus 29 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~ 100 (440)
..+++.++...+. .+...+..+...+.. .+++++|...|++..+.| +...+..|...|.. .++.++
T Consensus 24 ~~~~~~~~~~a~~---g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~ 97 (490)
T 2xm6_A 24 NVNLEQLKQKAES---GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQ 97 (490)
T ss_dssp -CCHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred hHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHH
Confidence 4456666666664 477788888888887 899999999999998864 56788889999998 899999
Q ss_pred HHHHHhccc--CCchhHHHHHHHHHh----cCChhHHHHHHHHHhcCCCCCCchhhHHHHHHHHHh----cCChhhHHHH
Q 047359 101 VLGLLDSGI--YSSVMYNLVIDFYSK----KGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDGARR----YEKTEVSDRI 170 (440)
Q Consensus 101 a~~~~~~~~--~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~ 170 (440)
|.+.|++.. .+...+..|...|.. .+++++|...|++..+ .+ +...+..+...|.. .+++++|.+.
T Consensus 98 A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~-~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 173 (490)
T 2xm6_A 98 AVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAE-QG---RDSGQQSMGDAYFEGDGVTRDYVMAREW 173 (490)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 999999977 566778888888988 8899999999999987 43 45677778888877 7899999999
Q ss_pred HHHHHhcCCCCcccccchHHHHHHHhh----cCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhh----hccHHHHHHH
Q 047359 171 VGLMVEKKLLPKHFLSGNDYVIQKLSD----MGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSK----EGRVKEAIQI 242 (440)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~ 242 (440)
|++..+.+ + ...+..+...|.. .++.++|.+.|++..+.+ +...+..+...|.. .+++++|..+
T Consensus 174 ~~~a~~~~---~--~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~ 245 (490)
T 2xm6_A 174 YSKAAEQG---N--VWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVL 245 (490)
T ss_dssp HHHHHHTT---C--HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHCC---C--HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 99998864 3 6678888888888 899999999999998864 56677778888876 7899999999
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcC-----CCHHHHHHHH
Q 047359 243 YHLISERGITVRDSDYYAFVNVLCK----EHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGK-----GKWKEVEELL 313 (440)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~ 313 (440)
|++..+.+ +...+..+...+.. .+++++|..+++...+.+ +...+..+...|... +++++|...+
T Consensus 246 ~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~ 319 (490)
T 2xm6_A 246 FSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWY 319 (490)
T ss_dssp HHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHH
Confidence 99998875 44566777777777 899999999999998765 445667777777776 8999999999
Q ss_pred HHHHhcCCCCchhhhHHHHHHHHcCC---cHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHh----cCcHHHHHHHHHHH
Q 047359 314 SAVLDKGLLLDSFCCSSLMEYYCSNR---QIDKAIALHIKIEKLKGSLDVATYDVLLDGLFK----DGRMEEAVRIFDYM 386 (440)
Q Consensus 314 ~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~ 386 (440)
++..+.+ +...+..+...|...| +.++|.+.|++..+.+ +...+..|...|.. .++.++|.+.|++.
T Consensus 320 ~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A 393 (490)
T 2xm6_A 320 TKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKA 393 (490)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 9998875 4566777877887766 8999999999999863 67788899999988 89999999999999
Q ss_pred HHcCCCchhhHHHHHHHHHh----cccHHHHHHHHHHHHHCC
Q 047359 387 KELKVVSSSSFVIVVSRLCH----LKELRKAMKNHDEMLKMG 424 (440)
Q Consensus 387 ~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~ 424 (440)
.+.+ ++.++..+...|.. .++.++|...|++..+.+
T Consensus 394 ~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 394 AEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 9875 67888999999988 899999999999999865
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.89 E-value=7.1e-21 Score=168.62 Aligned_cols=297 Identities=12% Similarity=-0.004 Sum_probs=177.8
Q ss_pred cCChHHHHH-HHhccc---C-----CchhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCC-chhhHHHHHHHHHhcCCh
Q 047359 95 SGKFEVVLG-LLDSGI---Y-----SSVMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTP-GFSTYSSILDGARRYEKT 164 (440)
Q Consensus 95 ~~~~~~a~~-~~~~~~---~-----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~ 164 (440)
.|++++|.. .+++.. | +...+..+...+.+.|++++|...|+++.+ ..| +...+..+..++.+.|++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQ---QDPKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHH---SCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCcCH
Confidence 355555555 555433 1 223355555555555555555555555554 222 233455555555555555
Q ss_pred hhHHHHHHHHHhcCCCCcccccchHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHH
Q 047359 165 EVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYH 244 (440)
Q Consensus 165 ~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 244 (440)
++|...++++.+.. |+. ..++..+...+...|++++|...++++....+.. ...+..+. .....
T Consensus 115 ~~A~~~~~~al~~~--~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~-------~~~~~----- 178 (368)
T 1fch_A 115 LLAISALRRCLELK--PDN-QTALMALAVSFTNESLQRQACEILRDWLRYTPAY-AHLVTPAE-------EGAGG----- 178 (368)
T ss_dssp HHHHHHHHHHHHHC--TTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTT-GGGCC--------------------
T ss_pred HHHHHHHHHHHhcC--CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHH-------HHhhh-----
Confidence 55555555555433 221 3444445555555555555555555554433221 11111000 00000
Q ss_pred HHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCC
Q 047359 245 LISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIP-CAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLL 323 (440)
Q Consensus 245 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 323 (440)
..+ ...+. .+..+...|++++|...++.+.+..... +..++..+...+...|++++|...++++....+.
T Consensus 179 ------~~~-~~~~~-~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~- 249 (368)
T 1fch_A 179 ------AGL-GPSKR-ILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN- 249 (368)
T ss_dssp --------------C-TTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred ------hcc-cHHHH-HHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-
Confidence 000 00001 1223337788888888888887754211 4667778888888888888888888888776433
Q ss_pred chhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCc----------
Q 047359 324 DSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVS---------- 393 (440)
Q Consensus 324 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---------- 393 (440)
+...+..+...+...|++++|...++++.+..+. +...+..+..+|.+.|++++|...|+++.+..+.+
T Consensus 250 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 328 (368)
T 1fch_A 250 DYLLWNKLGATLANGNQSEEAVAAYRRALELQPG-YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAM 328 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccch
Confidence 5678888888889999999999999988876432 67788888999999999999999999888766554
Q ss_pred -hhhHHHHHHHHHhcccHHHHHHHHHHH
Q 047359 394 -SSSFVIVVSRLCHLKELRKAMKNHDEM 420 (440)
Q Consensus 394 -~~~~~~l~~~~~~~g~~~~a~~~~~~m 420 (440)
..+|..+..++...|++++|..++++.
T Consensus 329 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 329 SENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp CHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred hhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 788999999999999999998887643
No 21
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.88 E-value=1.4e-18 Score=161.29 Aligned_cols=380 Identities=11% Similarity=0.057 Sum_probs=279.0
Q ss_pred HHHHHhcCCccChHhHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhccc---CC
Q 047359 35 YRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSGKFEVVLGLLDSGI---YS 111 (440)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~ 111 (440)
|+...+.. +-+...|..++. +.+.|++++|..+|+++.+.. +.+...|..++..+.+.|++++|..+|++.. |+
T Consensus 2 le~al~~~-P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~ 78 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLH 78 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCC
T ss_pred hhhHhhhC-CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Confidence 45555554 457889999998 478899999999999998863 4467789999999999999999999999987 87
Q ss_pred chhHHHHHHHH-HhcCChhHHHH----HHHHHhcCCCCCC-chhhHHHHHHHHHh---------cCChhhHHHHHHHHHh
Q 047359 112 SVMYNLVIDFY-SKKGDFGAAFD----RLNEMCNGRNLTP-GFSTYSSILDGARR---------YEKTEVSDRIVGLMVE 176 (440)
Q Consensus 112 ~~~~~~li~~~-~~~~~~~~a~~----~~~~~~~~~~~~p-~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~ 176 (440)
...|..++... ...|+.++|.+ +|++.....|..| +...|...+..... .|+++.|..+|++.++
T Consensus 79 ~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~ 158 (530)
T 2ooe_A 79 IDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV 158 (530)
T ss_dssp HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh
Confidence 77777777533 45688877765 7777665345554 45577777766554 6889999999999988
Q ss_pred cCCCCccc-ccchHHHHHHH-------------hhcCcHHHHHHHHHHH------HhcC---CCCC--------HHhHHH
Q 047359 177 KKLLPKHF-LSGNDYVIQKL-------------SDMGKTYAAEMIFKRA------CDEK---IELQ--------DDTCGC 225 (440)
Q Consensus 177 ~~~~~~~~-~~~~~~l~~~~-------------~~~~~~~~a~~~~~~~------~~~~---~~~~--------~~~~~~ 225 (440)
. |... ...|....... ...+++..|..++... .+.. +.|+ ...|..
T Consensus 159 ~---P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~ 235 (530)
T 2ooe_A 159 N---PMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKK 235 (530)
T ss_dssp S---CCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHH
T ss_pred c---hhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHH
Confidence 3 3310 22332222211 1345677787777663 2221 2333 235555
Q ss_pred HHHHHhhh----ccH----HHHHHHHHHHHHcCCCCChhhHHHHHHHHHh-------cCChH-------HHHHHHHHHHH
Q 047359 226 MLKALSKE----GRV----KEAIQIYHLISERGITVRDSDYYAFVNVLCK-------EHQPE-------EVCGLLRDVVE 283 (440)
Q Consensus 226 l~~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~ 283 (440)
.+...... ++. +.+..+|++.....+ .+...|..++..+.+ .|+++ +|..+++...+
T Consensus 236 ~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p-~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~ 314 (530)
T 2ooe_A 236 YIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIS 314 (530)
T ss_dssp HHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHH
Confidence 54332221 222 477889999888643 367788888887775 68987 89999999986
Q ss_pred cCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCc-hhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHh
Q 047359 284 RGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLD-SFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVAT 362 (440)
Q Consensus 284 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~ 362 (440)
.-.+.+...+..++..+.+.|++++|..+|+++.+..+. + ...|..++..+.+.|+.++|.++|++..+.... +...
T Consensus 315 ~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~ 392 (530)
T 2ooe_A 315 TLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHV 392 (530)
T ss_dssp TTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHH
T ss_pred HhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHH
Confidence 323446778889999999999999999999999986332 3 257888888888999999999999999986322 3333
Q ss_pred HHHHHHH-HHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcccHHHHHHHHHHHHHC
Q 047359 363 YDVLLDG-LFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLKELRKAMKNHDEMLKM 423 (440)
Q Consensus 363 ~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 423 (440)
|...... +...|+.++|..+|++..+..|.++..|..++..+.+.|+.++|..+|++.+..
T Consensus 393 ~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 393 YVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 454 (530)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence 3333222 346899999999999999998889999999999999999999999999999985
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.87 E-value=1e-19 Score=161.21 Aligned_cols=304 Identities=8% Similarity=-0.066 Sum_probs=213.5
Q ss_pred HHHhccchhHHHH-HHHHHHHcCC-CC--ChhhHHHHHHHHHhcCChHHHHHHHhccc----CCchhHHHHHHHHHhcCC
Q 047359 56 ALYRQNEIRLASC-LYGAMVRDGV-SP--NKFTWSLVAQILCRSGKFEVVLGLLDSGI----YSSVMYNLVIDFYSKKGD 127 (440)
Q Consensus 56 ~~~~~~~~~~a~~-~~~~~~~~~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~li~~~~~~~~ 127 (440)
.+...|++++|.+ .+++..+... .| +...+..+...+.+.|++++|...|+++. .+..++..+..++...|+
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC
Confidence 4556688999998 8887654321 11 35668889999999999999999999987 456678999999999999
Q ss_pred hhHHHHHHHHHhcCCCCCC-chhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCcccccchHHHHHHHhhcCcHHHHHH
Q 047359 128 FGAAFDRLNEMCNGRNLTP-GFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEM 206 (440)
Q Consensus 128 ~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 206 (440)
+++|.+.|+++.+ ..| +..++..+..++...|++++|...++++.+.. |+. ...+..+... ...
T Consensus 114 ~~~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~-~~~~~~~~~~-------~~~-- 178 (368)
T 1fch_A 114 ELLAISALRRCLE---LKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAY-AHLVTPAEEG-------AGG-- 178 (368)
T ss_dssp HHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTT-GGGCC-----------------
T ss_pred HHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCc-HHHHHHHHHH-------hhh--
Confidence 9999999999987 334 56788999999999999999999999999865 432 2222111000 000
Q ss_pred HHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 047359 207 IFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITV-RDSDYYAFVNVLCKEHQPEEVCGLLRDVVERG 285 (440)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 285 (440)
..+ ...+..+...+ ..|++++|...++++.+..+.. +..++..+...+...|++++|...++.+.+..
T Consensus 179 ---------~~~-~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 247 (368)
T 1fch_A 179 ---------AGL-GPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR 247 (368)
T ss_dssp -----------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ---------hcc-cHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 000 01111222223 7788888888888887764332 46677778888888888888888888887753
Q ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCc-------
Q 047359 286 YIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSL------- 358 (440)
Q Consensus 286 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p------- 358 (440)
+.+...+..+...+...|++++|...++++.+..+. +...+..+..+|...|++++|...++++.+.....
T Consensus 248 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 325 (368)
T 1fch_A 248 -PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG-YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEG 325 (368)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------C
T ss_pred -cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccc
Confidence 345667888888888888888888888888776433 56778888888888999999999888887653321
Q ss_pred ---CHHhHHHHHHHHHhcCcHHHHHHHHHHHH
Q 047359 359 ---DVATYDVLLDGLFKDGRMEEAVRIFDYMK 387 (440)
Q Consensus 359 ---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 387 (440)
...+|..+..+|...|+.++|..++++..
T Consensus 326 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 326 GAMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp CCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred cchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 15788889999999999999988876443
No 23
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.87 E-value=1e-18 Score=160.21 Aligned_cols=368 Identities=12% Similarity=-0.004 Sum_probs=245.5
Q ss_pred cChHhHHHHHHHHHhccchhHHHHHHHHHHHc--------CCCCChhhHHHHHHHHHhcCChHHHHHHHhccc-------
Q 047359 45 PAVSACNALLDALYRQNEIRLASCLYGAMVRD--------GVSPNKFTWSLVAQILCRSGKFEVVLGLLDSGI------- 109 (440)
Q Consensus 45 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~------- 109 (440)
.....||.+...+...|++++|++.|++..+. ..+....+|+.+..+|...|++++|...+++..
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34567888989999999999999999877542 112235678889999999999999998887754
Q ss_pred -----CCchhHHHHHHHHHh--cCChhHHHHHHHHHhcCCCCCCchh-hHHHHHHH---HHhcCChhhHHHHHHHHHhcC
Q 047359 110 -----YSSVMYNLVIDFYSK--KGDFGAAFDRLNEMCNGRNLTPGFS-TYSSILDG---ARRYEKTEVSDRIVGLMVEKK 178 (440)
Q Consensus 110 -----~~~~~~~~li~~~~~--~~~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~ 178 (440)
....++..+..++.. .+++++|++.|++..+ +.|+.. .+..+..+ +...++.++|++.+++.++..
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~---~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~ 205 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALE---KKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN 205 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC
Confidence 122345555555554 3578999999999877 556533 44444333 445677888999998888754
Q ss_pred CCCcccccchHHHHHHHhh----cCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCC
Q 047359 179 LLPKHFLSGNDYVIQKLSD----MGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVR 254 (440)
Q Consensus 179 ~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 254 (440)
|+. ...+..+...+.. .+++++|.+.+++.....+. +..++..+...|...|++++|...+++..+..+. +
T Consensus 206 --p~~-~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~ 280 (472)
T 4g1t_A 206 --PDN-QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-N 280 (472)
T ss_dssp --SSC-HHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-C
T ss_pred --Ccc-hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-h
Confidence 442 4455555444443 46778899999988877654 6778888999999999999999999999887543 4
Q ss_pred hhhHHHHHHHHHhc-------------------CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHH
Q 047359 255 DSDYYAFVNVLCKE-------------------HQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSA 315 (440)
Q Consensus 255 ~~~~~~l~~~~~~~-------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 315 (440)
..++..+..+|... +.+++|...++...+.. +.+...+..+...+...|++++|+..|++
T Consensus 281 ~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~k 359 (472)
T 4g1t_A 281 AYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQK 359 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHH
Confidence 55666555554321 23567777888877654 44567788899999999999999999999
Q ss_pred HHhcCCCCchh--hhHHHHH-HHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCC
Q 047359 316 VLDKGLLLDSF--CCSSLME-YYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVV 392 (440)
Q Consensus 316 ~~~~~~~~~~~--~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 392 (440)
..+..+.+... .+..+.. .....|+.++|+..|.+..+. .|+.... .+....+.+++++..+.+|.
T Consensus 360 aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~---------~~~~~~l~~~~~~~l~~~p~ 428 (472)
T 4g1t_A 360 EFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREK---------EKMKDKLQKIAKMRLSKNGA 428 (472)
T ss_dssp HHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHH---------HHHHHHHHHHHHHHHHHCC-
T ss_pred HHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHH---------HHHHHHHHHHHHHHHHhCCC
Confidence 98875543322 2222222 245789999999999999874 4443322 22345566778888888888
Q ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHCC-CCCCHHHH
Q 047359 393 SSSSFVIVVSRLCHLKELRKAMKNHDEMLKMG-HKPDEATY 432 (440)
Q Consensus 393 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~t~ 432 (440)
++.+|..+...|...|++++|++.|++.++.+ ..|+..+|
T Consensus 429 ~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 429 DSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp CTTHHHHHHHHHHHHHHCC----------------------
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 99999999999999999999999999998843 45555544
No 24
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.86 E-value=2.1e-19 Score=158.98 Aligned_cols=264 Identities=9% Similarity=-0.040 Sum_probs=174.9
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCcccccchHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHH
Q 047359 150 TYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKA 229 (440)
Q Consensus 150 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 229 (440)
.+..+...+.+.|++++|...|+++.+.. |+. ..++..+...+...|++++|...|+++.+..+. +..++..+..+
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 142 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQD--PGD-AEAWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMALAVS 142 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHH
Confidence 34555555555555555555555555543 222 445555556666666666666666665554332 45566666666
Q ss_pred HhhhccHHHHHHHHHHHHHcCCCC---------ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CChhhHHHHHHH
Q 047359 230 LSKEGRVKEAIQIYHLISERGITV---------RDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYI-PCAMELSRFVAS 299 (440)
Q Consensus 230 ~~~~~~~~~a~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~ 299 (440)
|...|++++|...++++.+..... ....+..+...+...|++++|...++.+.+.... ++..++..+...
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 666666666666666665543110 1122334466777788888888888888776421 156677888888
Q ss_pred HHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHH
Q 047359 300 QCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEA 379 (440)
Q Consensus 300 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 379 (440)
+...|++++|...++++.+..+. +..++..+..+|...|++++|...++++.+..+. +..++..+..+|.+.|++++|
T Consensus 223 ~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCHHHH
Confidence 88888888888888888776543 6778888888888999999999999888876433 577888888899999999999
Q ss_pred HHHHHHHHHcCCC------------chhhHHHHHHHHHhcccHHHHHHHHHH
Q 047359 380 VRIFDYMKELKVV------------SSSSFVIVVSRLCHLKELRKAMKNHDE 419 (440)
Q Consensus 380 ~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 419 (440)
...|+++.+..+. +..+|..+..++...|+.+.+..+.++
T Consensus 301 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 301 VSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999988776544 357888999999999999888877655
No 25
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.85 E-value=8e-20 Score=158.36 Aligned_cols=280 Identities=15% Similarity=0.068 Sum_probs=127.0
Q ss_pred ccCCcchHHHHHHHHHhcCCccChHhHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHH
Q 047359 24 HKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSGKFEVVLG 103 (440)
Q Consensus 24 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 103 (440)
+.|++++|.+.++++.. +.+|..+..++.+.|++++|.+.|.+. +|..+|..++..+...|++++|+.
T Consensus 15 ~~~~ld~A~~fae~~~~------~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNE------PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCC------hHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 56778999999988832 248889999999999999999999652 567788888999999999999999
Q ss_pred HHhccc---CCchhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCC
Q 047359 104 LLDSGI---YSSVMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLL 180 (440)
Q Consensus 104 ~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 180 (440)
.++... +++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|...|..+
T Consensus 83 yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~--------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------ 148 (449)
T 1b89_A 83 YLQMARKKARESYVETELIFALAKTNRLAELEEFIN--------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------ 148 (449)
T ss_dssp --------------------------CHHHHTTTTT--------CC----------------CTTTHHHHHHHT------
T ss_pred HHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHc--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh------
Confidence 777666 556778889999999999988876663 266678999999999999999999999854
Q ss_pred CcccccchHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHH
Q 047359 181 PKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYA 260 (440)
Q Consensus 181 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 260 (440)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+. ..+.....
T Consensus 149 -----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~ 212 (449)
T 1b89_A 149 -----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEE 212 (449)
T ss_dssp -----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHH
T ss_pred -----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHH
Confidence 46888999999999999999999888 267899999999999999999966554322 23333556
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHh-cCCCC------chhhhHHHHH
Q 047359 261 FVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLD-KGLLL------DSFCCSSLME 333 (440)
Q Consensus 261 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~------~~~~~~~l~~ 333 (440)
++..|.+.|.+++|..+++...... +.....|+.+..+|++- ++++.++.++.... .+++| +...|..+..
T Consensus 213 lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ 290 (449)
T 1b89_A 213 LINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVF 290 (449)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 8888999999999999999888654 45566777777777764 34444444333221 22222 4667888888
Q ss_pred HHHcCCcHHHHHHH
Q 047359 334 YYCSNRQIDKAIAL 347 (440)
Q Consensus 334 ~~~~~~~~~~a~~~ 347 (440)
.|...++++.|...
T Consensus 291 ly~~~~e~d~A~~t 304 (449)
T 1b89_A 291 LYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHTTCHHHHHHH
T ss_pred HHHhhchHHHHHHH
Confidence 88899999988764
No 26
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.85 E-value=3.3e-19 Score=155.06 Aligned_cols=264 Identities=8% Similarity=-0.074 Sum_probs=174.1
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCcccccchHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHH
Q 047359 150 TYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKA 229 (440)
Q Consensus 150 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 229 (440)
.+..+...+...|++++|...++++.+.. |+. ...+..+...+...|++++|...++++.+..+. +..++..+...
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 98 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA--PER-EEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVS 98 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC-CHHHHHHHHHH
Confidence 34444445555555555555555555433 221 444555555555555555555555555554332 44455555555
Q ss_pred HhhhccHHHHHHHHHHHHHcCCCCChhhHHHH--------------HH-HHHhcCChHHHHHHHHHHHHcCCCCChhhHH
Q 047359 230 LSKEGRVKEAIQIYHLISERGITVRDSDYYAF--------------VN-VLCKEHQPEEVCGLLRDVVERGYIPCAMELS 294 (440)
Q Consensus 230 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 294 (440)
+...|++++|...++++.+.... +...+..+ .. .+...|++++|...++.+.+.. +.+...+.
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 176 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHA 176 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHH
Confidence 66666666666666665554322 11222222 22 2556677788888887777654 33566777
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcC
Q 047359 295 RFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDG 374 (440)
Q Consensus 295 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 374 (440)
.+...+...|++++|...++++.+..+. +...+..+...+...|++++|...++++.+.... +...+..+...+.+.|
T Consensus 177 ~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g 254 (327)
T 3cv0_A 177 SLGVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYNRALDINPG-YVRVMYNMAVSYSNMS 254 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhc
Confidence 7777888888888888888888776433 5677888888888888888888888888876433 5678888888888999
Q ss_pred cHHHHHHHHHHHHHcCCC------------chhhHHHHHHHHHhcccHHHHHHHHHHHH
Q 047359 375 RMEEAVRIFDYMKELKVV------------SSSSFVIVVSRLCHLKELRKAMKNHDEML 421 (440)
Q Consensus 375 ~~~~a~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 421 (440)
++++|.+.++++.+..+. ++.++..+..++.+.|++++|..++++..
T Consensus 255 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 255 QYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp CHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred cHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 999999999888877766 67788889999999999999988887544
No 27
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.85 E-value=1.8e-19 Score=159.41 Aligned_cols=267 Identities=9% Similarity=-0.074 Sum_probs=203.4
Q ss_pred CchhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCC-chhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCcccccchH
Q 047359 111 SSVMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTP-GFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGND 189 (440)
Q Consensus 111 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 189 (440)
+...+..+...+.+.|++++|...|+++.+ ..| +..++..+..++.+.|++++|...|+++.+.. |+. ..++.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~-~~~~~ 137 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAIL---QDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ--PNN-LKALM 137 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTC-HHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCC-HHHHH
Confidence 344577777888888888888888888876 233 45677788888888888888888888887754 432 66777
Q ss_pred HHHHHHhhcCcHHHHHHHHHHHHhcCCCC---------CHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCC-CChhhHH
Q 047359 190 YVIQKLSDMGKTYAAEMIFKRACDEKIEL---------QDDTCGCMLKALSKEGRVKEAIQIYHLISERGIT-VRDSDYY 259 (440)
Q Consensus 190 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~ 259 (440)
.+...|...|++++|...++++.+..+.. ....+..+...+...|++++|...++++.+..+. ++..++.
T Consensus 138 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 217 (365)
T 4eqf_A 138 ALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQT 217 (365)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHH
T ss_pred HHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHH
Confidence 88888888888888888888887653220 1223334577888999999999999999887543 2577888
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCC
Q 047359 260 AFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNR 339 (440)
Q Consensus 260 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 339 (440)
.+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...++++.+..+. +...+..+..+|...|
T Consensus 218 ~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g 295 (365)
T 4eqf_A 218 GLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLG 295 (365)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCC
Confidence 89999999999999999999998864 446778999999999999999999999999887543 5778889999999999
Q ss_pred cHHHHHHHHHHHHhccCC-----------cCHHhHHHHHHHHHhcCcHHHHHHHHHH
Q 047359 340 QIDKAIALHIKIEKLKGS-----------LDVATYDVLLDGLFKDGRMEEAVRIFDY 385 (440)
Q Consensus 340 ~~~~a~~~~~~~~~~~~~-----------p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 385 (440)
++++|...++++.+.... .+...|..+..++...|+.+.+.++.++
T Consensus 296 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 296 AYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp CCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999999999875322 1367889999999999999988877654
No 28
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.84 E-value=1.2e-18 Score=147.95 Aligned_cols=258 Identities=11% Similarity=0.016 Sum_probs=160.5
Q ss_pred HHHHhcCChhHHHHHHHHHhcCCCCCCch--hhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCcccccchHHHHHHHhh
Q 047359 120 DFYSKKGDFGAAFDRLNEMCNGRNLTPGF--STYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSD 197 (440)
Q Consensus 120 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 197 (440)
+-....|+++.|+..++.... ..|+. .....+.++|...|+++.|...++. .-.|+ ..++..+...+..
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~---~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~--~~a~~~la~~~~~ 77 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKP---SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPE--LQAVRMFAEYLAS 77 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCC---CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHH--HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhccc---CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChh--HHHHHHHHHHHcC
Confidence 445566777777777776643 44443 2445566777777777777765433 12233 5566667777777
Q ss_pred cCcHHHHHHHHHHHHhcCCCC-CHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHH
Q 047359 198 MGKTYAAEMIFKRACDEKIEL-QDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCG 276 (440)
Q Consensus 198 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 276 (440)
.++.++|.+.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|.+
T Consensus 78 ~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~ 151 (291)
T 3mkr_A 78 HSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARK 151 (291)
T ss_dssp STTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 777777777777776654333 344555555677777777777777765 2455666667777777777777777
Q ss_pred HHHHHHHcCCCCChhhH---HHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHh
Q 047359 277 LLRDVVERGYIPCAMEL---SRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEK 353 (440)
Q Consensus 277 ~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 353 (440)
.++.+.+.. |+.... ...+..+...|++++|..+|+++.+..+ .+...++.+..++...|++++|...++++.+
T Consensus 152 ~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~eA~~~l~~al~ 228 (291)
T 3mkr_A 152 ELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS-PTLLLLNGQAACHMAQGRWEAAEGVLQEALD 228 (291)
T ss_dssp HHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777776653 332211 1122333344667777777777766533 3566666666677777777777777777666
Q ss_pred ccCCcCHHhHHHHHHHHHhcCcHHH-HHHHHHHHHHcCCCchhh
Q 047359 354 LKGSLDVATYDVLLDGLFKDGRMEE-AVRIFDYMKELKVVSSSS 396 (440)
Q Consensus 354 ~~~~p~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~~~~~~~ 396 (440)
..+. +..++..++..+...|+.++ +.++++++.+.+|.++.+
T Consensus 229 ~~p~-~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~ 271 (291)
T 3mkr_A 229 KDSG-HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFI 271 (291)
T ss_dssp HCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH
T ss_pred hCCC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHH
Confidence 5433 55666666666666666654 456667777666665543
No 29
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.84 E-value=1.4e-17 Score=152.66 Aligned_cols=371 Identities=11% Similarity=-0.046 Sum_probs=248.5
Q ss_pred CCChHhHHHHHHHHHccCCcchHHHHHHHHHhc--------CCccChHhHHHHHHHHHhccchhHHHHHHHHHHHc----
Q 047359 9 DSQSDALSLVLDCYSHKGLFMDGLEVYRMMRVY--------GFVPAVSACNALLDALYRQNEIRLASCLYGAMVRD---- 76 (440)
Q Consensus 9 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---- 76 (440)
......||.+...+...|++++|++.|++..+. ..+....+|+.+..+|...|++++|...+++..+.
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 344678999999999999999999999987642 11224568999999999999999999999887542
Q ss_pred -C-CC-CChhhHHHHHHHHHhc--CChHHHHHHHhccc---CCc-hhHHHHHHH---HHhcCChhHHHHHHHHHhcCCCC
Q 047359 77 -G-VS-PNKFTWSLVAQILCRS--GKFEVVLGLLDSGI---YSS-VMYNLVIDF---YSKKGDFGAAFDRLNEMCNGRNL 144 (440)
Q Consensus 77 -~-~~-~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~---~~~-~~~~~li~~---~~~~~~~~~a~~~~~~~~~~~~~ 144 (440)
+ .. ....++..+..++... +++++|+..|++.. |+. ..+..+..+ +...++.++|++.+++..+ +
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~---l 204 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIR---L 204 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHH---H
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhh---c
Confidence 1 11 1245566666566554 46899999999977 543 344444444 4456888999999999876 4
Q ss_pred CCc-hhhHHHHHHHHHh----cCChhhHHHHHHHHHhcCCCCcccccchHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCC
Q 047359 145 TPG-FSTYSSILDGARR----YEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQ 219 (440)
Q Consensus 145 ~p~-~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 219 (440)
.|+ ...+..+...+.. .+++++|.+.+++..... |+. ..++..+...|...|++++|...+++..+..+. +
T Consensus 205 ~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~--~~~-~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~ 280 (472)
T 4g1t_A 205 NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA--PGV-TDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-N 280 (472)
T ss_dssp CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC--SSC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-C
T ss_pred CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC--ccH-HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-h
Confidence 454 3455555444443 467889999999988765 443 677888999999999999999999999987655 5
Q ss_pred HHhHHHHHHHHhhh-------------------ccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 047359 220 DDTCGCMLKALSKE-------------------GRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRD 280 (440)
Q Consensus 220 ~~~~~~l~~~~~~~-------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 280 (440)
..++..+..+|... +.++.|...++...+..+. +..++..+...+...|++++|...|+.
T Consensus 281 ~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~k 359 (472)
T 4g1t_A 281 AYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEYYFQK 359 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHHHHHH
Confidence 66677666665432 3467788888888776543 567788899999999999999999999
Q ss_pred HHHcCCCCChh--hHHHHHH-HHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCC
Q 047359 281 VVERGYIPCAM--ELSRFVA-SQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGS 357 (440)
Q Consensus 281 ~~~~~~~~~~~--~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 357 (440)
..+....+... .+..+.. .....|+.++|+..+++..+.. |+.... .+....+.+++++..+.++.
T Consensus 360 aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~--~~~~~~---------~~~~~~l~~~~~~~l~~~p~ 428 (472)
T 4g1t_A 360 EFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN--QKSREK---------EKMKDKLQKIAKMRLSKNGA 428 (472)
T ss_dssp HHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC--CCCHHH---------HHHHHHHHHHHHHHHHHCC-
T ss_pred HHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHH---------HHHHHHHHHHHHHHHHhCCC
Confidence 98865333221 2222222 2346799999999999998864 333222 12234455666666665443
Q ss_pred cCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHH
Q 047359 358 LDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVI 399 (440)
Q Consensus 358 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 399 (440)
+..+|..+...|...|++++|++.|+++.+.++.+|.+...
T Consensus 429 -~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 429 -DSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp -CTTHHHHHHHHHHHHHHCC----------------------
T ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 67899999999999999999999999999988776555443
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.83 E-value=3.4e-18 Score=148.66 Aligned_cols=264 Identities=12% Similarity=-0.012 Sum_probs=187.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhcCCCCCC-chhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCcccccchHHHHH
Q 047359 115 YNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTP-GFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQ 193 (440)
Q Consensus 115 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~ 193 (440)
+..+...+...|++++|..+|+++.+ ..| +...+..+..++...|++++|...++++.+.. |+. ..++..+..
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-~~~~~~la~ 97 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQ---AAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKD-IAVHAALAV 97 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTC-HHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--cCC-HHHHHHHHH
Confidence 44455555566666666666666554 122 34455555556666666666666666665543 322 445555666
Q ss_pred HHhhcCcHHHHHHHHHHHHhcCCCCCHHhHHHH--------------HH-HHhhhccHHHHHHHHHHHHHcCCCCChhhH
Q 047359 194 KLSDMGKTYAAEMIFKRACDEKIELQDDTCGCM--------------LK-ALSKEGRVKEAIQIYHLISERGITVRDSDY 258 (440)
Q Consensus 194 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 258 (440)
.+...|++++|.+.++++.+..+. +...+..+ .. .+...|++++|...++++.+.... +...+
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~ 175 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLH 175 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHHH
Confidence 666666666666666666554332 22222222 22 377889999999999998887543 67788
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcC
Q 047359 259 YAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSN 338 (440)
Q Consensus 259 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 338 (440)
..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+..+. +...+..+...|...
T Consensus 176 ~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~ 253 (327)
T 3cv0_A 176 ASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPG-YVRVMYNMAVSYSNM 253 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHh
Confidence 888899999999999999999988764 345678888899999999999999999999877543 677888899999999
Q ss_pred CcHHHHHHHHHHHHhccCCc-----------CHHhHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 047359 339 RQIDKAIALHIKIEKLKGSL-----------DVATYDVLLDGLFKDGRMEEAVRIFDYMKE 388 (440)
Q Consensus 339 ~~~~~a~~~~~~~~~~~~~p-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 388 (440)
|++++|.+.++++.+..... +...|..+..++.+.|+.++|..++++..+
T Consensus 254 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 254 SQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp TCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred ccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 99999999999998765442 467888999999999999999999875543
No 31
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.83 E-value=1.1e-17 Score=142.14 Aligned_cols=256 Identities=9% Similarity=0.025 Sum_probs=140.9
Q ss_pred HHhcCChhhHHHHHHHHHhcCCCCcccccchHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHH
Q 047359 158 ARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVK 237 (440)
Q Consensus 158 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 237 (440)
....|++..|+..++...... |+........+.++|...|+++.|...++. .-.|+..++..+...+...++.+
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~--p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSS--PERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCS--HHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHhcccCC--chhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHH
Confidence 344566666666555443322 321122334455666666666666654433 12334555556666666666666
Q ss_pred HHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHH
Q 047359 238 EAIQIYHLISERGITV-RDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAV 316 (440)
Q Consensus 238 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 316 (440)
+|++.++++...+..| +...+..+...+...|++++|+..++. +.+...+..++..+.+.|++++|.+.++++
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 6666666666554333 333444445566666666666666655 244555666666666666666666666666
Q ss_pred HhcCCCCchhhh---HHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCc
Q 047359 317 LDKGLLLDSFCC---SSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVS 393 (440)
Q Consensus 317 ~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 393 (440)
.+.. |+.... ...+..+...|++++|..+|+++.+..+ .+...++.+..++.+.|++++|...|+++.+..|.+
T Consensus 157 ~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~ 233 (291)
T 3mkr_A 157 QDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS-PTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGH 233 (291)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 6543 222111 1122333344666666666666665532 355566666666666666666666666666666666
Q ss_pred hhhHHHHHHHHHhcccHHH-HHHHHHHHHHCCCCCCHH
Q 047359 394 SSSFVIVVSRLCHLKELRK-AMKNHDEMLKMGHKPDEA 430 (440)
Q Consensus 394 ~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~~~~~p~~~ 430 (440)
+.++..++..+...|+.++ +.++++++.+ +.|+..
T Consensus 234 ~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~--~~P~~~ 269 (291)
T 3mkr_A 234 PETLINLVVLSQHLGKPPEVTNRYLSQLKD--AHRSHP 269 (291)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--hCCCCh
Confidence 6666666666666666544 3456666655 345443
No 32
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.82 E-value=2.2e-17 Score=143.18 Aligned_cols=362 Identities=10% Similarity=0.014 Sum_probs=174.2
Q ss_pred CChHhHHHHHHHHHccCCcchHHHHHHHHHhcCCccChHhHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHH
Q 047359 10 SQSDALSLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVA 89 (440)
Q Consensus 10 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 89 (440)
+++.+|+.+..++.+.|++++|++.|.+. +|..+|..++..+...|++++|+..++..++. .+++.+.+.++
T Consensus 30 ~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li 101 (449)
T 1b89_A 30 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELI 101 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHH
Confidence 45579999999999999999999999653 57779999999999999999999988877764 45678899999
Q ss_pred HHHHhcCChHHHHHHHhcccCCchhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCchhhHHHHHHHHHhcCChhhHHH
Q 047359 90 QILCRSGKFEVVLGLLDSGIYSSVMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDR 169 (440)
Q Consensus 90 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 169 (440)
.+|.+.|+++++.++++. |+..+|+.+...|...|.+++|...|..+ ..|..++.++.+.|++++|.+
T Consensus 102 ~~Y~Klg~l~e~e~f~~~--pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----------~n~~~LA~~L~~Lg~yq~AVe 169 (449)
T 1b89_A 102 FALAKTNRLAELEEFING--PNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------SNFGRLASTLVHLGEYQAAVD 169 (449)
T ss_dssp -------CHHHHTTTTTC--C----------------CTTTHHHHHHHT----------TCHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHhCCHHHHHHHHcC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHh----------hhHHHHHHHHHHhccHHHHHH
Confidence 999999999999988865 77789999999999999999999999987 269999999999999999999
Q ss_pred HHHHHHhcCCCCcccccchHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHc
Q 047359 170 IVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISER 249 (440)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 249 (440)
.+.++. + +.+|..++.+|...|+++.|...... +..++.-...++..|.+.|.+++|..+++.....
T Consensus 170 a~~KA~------~--~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~l 236 (449)
T 1b89_A 170 GARKAN------S--TRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGL 236 (449)
T ss_dssp HHHHHT------C--HHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred HHHHcC------C--chhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCC
Confidence 999881 3 78999999999999999999665544 2234444567899999999999999999998876
Q ss_pred CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH-cCCCC------ChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCC
Q 047359 250 GITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVE-RGYIP------CAMELSRFVASQCGKGKWKEVEELLSAVLDKGLL 322 (440)
Q Consensus 250 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 322 (440)
. +-....|+-+.-+|++- ++++..+.++.... -+++| +...|..+...|...++++.|... |.+. .
T Consensus 237 e-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t---m~~h--~ 309 (449)
T 1b89_A 237 E-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MMNH--P 309 (449)
T ss_dssp T-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH---HHHS--T
T ss_pred c-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH---HHhC--C
Confidence 5 34566777777777654 44444444443322 23333 467889999999999999988764 3332 1
Q ss_pred CchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHH-------------HHHHc
Q 047359 323 LDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFD-------------YMKEL 389 (440)
Q Consensus 323 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~-------------~~~~~ 389 (440)
|+..-...+.....+..+.+--.+...-..+. .+...+.|+.++...=|...+.++|+ .+...
T Consensus 310 ~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~----~p~~l~~ll~~l~~~ld~~r~v~~~~~~~~l~l~~~yl~~v~~~ 385 (449)
T 1b89_A 310 TDAWKEGQFKDIITKVANVELYYRAIQFYLEF----KPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNH 385 (449)
T ss_dssp TTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH----CGGGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTT
T ss_pred hhhhhhHHHHHHHhchhHHHHHHHHHHHHHhc----CHHHHHHHHHHHHhccCcHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 23333333444444444444333333333321 22234455555544444444444444 33332
Q ss_pred CCCchhhHHHHHHHHHhcccHHHHHHHH
Q 047359 390 KVVSSSSFVIVVSRLCHLKELRKAMKNH 417 (440)
Q Consensus 390 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 417 (440)
+ +..+=.++-..|....+++.-....
T Consensus 386 n--~~~vnealn~l~ieeed~~~lr~si 411 (449)
T 1b89_A 386 N--NKSVNESLNNLFITEEDYQALRTSI 411 (449)
T ss_dssp C--CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred h--HHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 2 2222334444555666665544433
No 33
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.81 E-value=3.7e-16 Score=151.24 Aligned_cols=354 Identities=10% Similarity=0.070 Sum_probs=266.4
Q ss_pred ChHhHHHHHHHHHccCCcchHHHHHHHHHhcCC--ccChHhHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHH
Q 047359 11 QSDALSLVLDCYSHKGLFMDGLEVYRMMRVYGF--VPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLV 88 (440)
Q Consensus 11 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 88 (440)
++.--...++.|...|.+.+|++++++..-.+- .-+....+.++....+. +..+..+..+..... ....+
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~-------d~~eI 1055 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY-------DAPDI 1055 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-------cHHHH
Confidence 444446678889999999999999999984321 12346667777777666 556666666655421 13447
Q ss_pred HHHHHhcCChHHHHHHHhcccCCchhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCchhhHHHHHHHHHhcCChhhHH
Q 047359 89 AQILCRSGKFEVVLGLLDSGIYSSVMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSD 168 (440)
Q Consensus 89 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 168 (440)
...+...|.+++|..+|++........+.++. ..+++++|.++.++.. +..+|..+..++...|++++|.
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~~~~~A~~VLie---~i~nldrAiE~Aervn-------~p~vWsqLAKAql~~G~~kEAI 1125 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFDVNTSAVQVLIE---HIGNLDRAYEFAERCN-------EPAVWSQLAKAQLQKGMVKEAI 1125 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHH---HHhhHHHHHHHHHhcC-------CHHHHHHHHHHHHhCCCHHHHH
Confidence 77888899999999999997633333333322 6788999999988762 3568889999999999999999
Q ss_pred HHHHHHHhcCCCCcccccchHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHH
Q 047359 169 RIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISE 248 (440)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 248 (440)
..|.+. .+ ...|..++.++.+.|++++|.+++....+... ++...+.++.+|++.+++++...+. +
T Consensus 1126 dsYiKA------dD--~say~eVa~~~~~lGkyEEAIeyL~mArk~~~--e~~Idt~LafaYAKl~rleele~fI----~ 1191 (1630)
T 1xi4_A 1126 DSYIKA------DD--PSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAKTNRLAELEEFI----N 1191 (1630)
T ss_pred HHHHhc------CC--hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc--cccccHHHHHHHHhhcCHHHHHHHH----h
Confidence 998664 23 67888899999999999999999998877653 3333445888999998888544332 2
Q ss_pred cCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhh
Q 047359 249 RGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCC 328 (440)
Q Consensus 249 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 328 (440)
.++...+..+...|...|++++|..+|..+ ..|..+..++++.|++++|.+.+++. .+..+|
T Consensus 1192 ---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aW 1253 (1630)
T 1xi4_A 1192 ---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTW 1253 (1630)
T ss_pred ---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHH
Confidence 245567778999999999999999999985 37889999999999999999999877 266888
Q ss_pred HHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHh--
Q 047359 329 SSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCH-- 406 (440)
Q Consensus 329 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 406 (440)
..+..+|...|++..|......+ ..++..+..++..|.+.|.+++|+.+++.....++.....|..+...|.+
T Consensus 1254 kev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~ 1328 (1630)
T 1xi4_A 1254 KEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK 1328 (1630)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCC
Confidence 88889999999999988876543 23667778999999999999999999998887775577777777666664
Q ss_pred cccHHHHHHHHHH
Q 047359 407 LKELRKAMKNHDE 419 (440)
Q Consensus 407 ~g~~~~a~~~~~~ 419 (440)
.++..++.++|..
T Consensus 1329 peklmEhlk~f~~ 1341 (1630)
T 1xi4_A 1329 PQKMREHLELFWS 1341 (1630)
T ss_pred HHHHHHHHHHHHH
Confidence 3455555555543
No 34
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.80 E-value=3.2e-17 Score=137.32 Aligned_cols=240 Identities=12% Similarity=-0.005 Sum_probs=180.7
Q ss_pred ccchHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCC--C----hhhH
Q 047359 185 LSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITV--R----DSDY 258 (440)
Q Consensus 185 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~----~~~~ 258 (440)
...+..+...+...|++++|...+++..+.. .+...+..+..++...|++++|...+++..+..... + ...+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3455666677777777777777777776665 466677777777777777777777777766543211 1 4667
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcC
Q 047359 259 YAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSN 338 (440)
Q Consensus 259 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 338 (440)
..+...+...|++++|...++.+.+.. |+. ..+...|++++|...++++....+. +...+..+...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVNPE-KAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHh
Confidence 777778888888888888888887753 332 2355567888888888888876433 566778888889999
Q ss_pred CcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcccHHHHHHHHH
Q 047359 339 RQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLKELRKAMKNHD 418 (440)
Q Consensus 339 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 418 (440)
|++++|...++++.+.... +...+..+...+...|++++|.+.++++.+..+.++.++..+..++...|++++|...++
T Consensus 153 ~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9999999999999886543 677888899999999999999999999999888888899999999999999999999999
Q ss_pred HHHHC----CCCCCHHHHHHHhh
Q 047359 419 EMLKM----GHKPDEATYKQVIS 437 (440)
Q Consensus 419 ~m~~~----~~~p~~~t~~~ll~ 437 (440)
+..+. +..|+.......+.
T Consensus 232 ~a~~~~~~~~~~p~~~~~~~~l~ 254 (258)
T 3uq3_A 232 AARTKDAEVNNGSSAREIDQLYY 254 (258)
T ss_dssp HHHHHHHHHHTTTTHHHHHHHHH
T ss_pred HHHHhChhhcCCCchHHHHHHHH
Confidence 88772 12276655544443
No 35
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.78 E-value=5.2e-15 Score=143.42 Aligned_cols=350 Identities=12% Similarity=0.108 Sum_probs=199.7
Q ss_pred HHHHHHccCCcchHHHHHHHHHhcCCccChHhHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 047359 18 VLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSGK 97 (440)
Q Consensus 18 li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 97 (440)
+...+...|.+++|..+|++.. -.....+.++. ..+++++|.++.++. -+..+|..+..++...|+
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~ 1120 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGM 1120 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCC
Confidence 3444555566666666666542 11112222222 445566666665543 134556666666666666
Q ss_pred hHHHHHHHhcccCCchhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 047359 98 FEVVLGLLDSGIYSSVMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEK 177 (440)
Q Consensus 98 ~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 177 (440)
+++|+..|.+. .+...|..++.++.+.|++++|.+.|...++ . .++....+.++.+|++.++++..... ++
T Consensus 1121 ~kEAIdsYiKA-dD~say~eVa~~~~~lGkyEEAIeyL~mArk-~--~~e~~Idt~LafaYAKl~rleele~f----I~- 1191 (1630)
T 1xi4_A 1121 VKEAIDSYIKA-DDPSSYMEVVQAANTSGNWEELVKYLQMARK-K--ARESYVETELIFALAKTNRLAELEEF----IN- 1191 (1630)
T ss_pred HHHHHHHHHhc-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHh-h--cccccccHHHHHHHHhhcCHHHHHHH----Hh-
Confidence 66666666554 4455556666666666666666666666554 2 22222223366666666665543222 11
Q ss_pred CCCCcccccchHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhh
Q 047359 178 KLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSD 257 (440)
Q Consensus 178 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 257 (440)
.++ ...+..+...|...|++++|..+|... ..|..+..++.+.|+++.|.+.+++. .+..+
T Consensus 1192 --~~n--~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~a 1252 (1630)
T 1xi4_A 1192 --GPN--NAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRT 1252 (1630)
T ss_pred --CCC--HHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHH
Confidence 123 344555666666666666666666653 25666666666666666666666654 23456
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHc
Q 047359 258 YYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCS 337 (440)
Q Consensus 258 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 337 (440)
|..+..+|...|++..|......+ ..+...+..++..|.+.|.+++|+.+++...... +-+...|+.+...|++
T Consensus 1253 Wkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaK 1326 (1630)
T 1xi4_A 1253 WKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK 1326 (1630)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHh
Confidence 666666666666666666544432 2344556677777888888888888887776554 2245566666666654
Q ss_pred C--CcHHHHHHHHHHHHhccCCc------CHHhHHHHHHHHHhcCcHHHHHHHHH-------------HHHHcCCCchhh
Q 047359 338 N--RQIDKAIALHIKIEKLKGSL------DVATYDVLLDGLFKDGRMEEAVRIFD-------------YMKELKVVSSSS 396 (440)
Q Consensus 338 ~--~~~~~a~~~~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~a~~~~~-------------~~~~~~~~~~~~ 396 (440)
. ++..++.+.|..-.. ++| +...|.-++-.|.+.|+++.|....- .... .+.++..
T Consensus 1327 y~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~-kv~n~el 1403 (1630)
T 1xi4_A 1327 FKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT-KVANVEL 1403 (1630)
T ss_pred CCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhc-ccccHHH
Confidence 3 344444444442222 221 45678888888888888888873222 1111 2336777
Q ss_pred HHHHHHHHHhcc---------------cHHHHHHHHH
Q 047359 397 FVIVVSRLCHLK---------------ELRKAMKNHD 418 (440)
Q Consensus 397 ~~~l~~~~~~~g---------------~~~~a~~~~~ 418 (440)
|...+..|...+ +++++.++|.
T Consensus 1404 yykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A 1404 YYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred HHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHH
Confidence 777777776665 6666666655
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.77 E-value=1.8e-16 Score=132.68 Aligned_cols=225 Identities=12% Similarity=0.017 Sum_probs=144.5
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCcccccchHHHHHHHhhcCcHHHHHHHHHHHHhcCCCC--C----HHhH
Q 047359 150 TYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIEL--Q----DDTC 223 (440)
Q Consensus 150 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~----~~~~ 223 (440)
.+..+...+...|++++|...+++..+.. .+ ...+..+..++...|++++|...+++..+..+.. + ..++
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~--~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KD--ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CC--THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--cc--HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 34444555555555555555555555544 33 4455555555555555555555555554432211 1 3556
Q ss_pred HHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcC
Q 047359 224 GCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGK 303 (440)
Q Consensus 224 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 303 (440)
..+...+...|++++|...+++..+.. |+ ...+...|++++|...++.+.... +.+...+..+...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~-------~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEH--RT-------ADILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CC-------HHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC--ch-------hHHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence 666666667777777777777666643 22 123455566777777777766643 23445666777777777
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHH
Q 047359 304 GKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIF 383 (440)
Q Consensus 304 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 383 (440)
|++++|...++++.+..+. +...+..+...|...|++++|...+++..+.... +...|..+...+.+.|++++|.+.+
T Consensus 153 ~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 8888888888877766543 5667777788888888888888888888776433 5677778888888888888888888
Q ss_pred HHHHHcC
Q 047359 384 DYMKELK 390 (440)
Q Consensus 384 ~~~~~~~ 390 (440)
+++.+..
T Consensus 231 ~~a~~~~ 237 (258)
T 3uq3_A 231 DAARTKD 237 (258)
T ss_dssp HHHHHHH
T ss_pred HHHHHhC
Confidence 8877765
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.77 E-value=1e-16 Score=130.13 Aligned_cols=198 Identities=13% Similarity=-0.020 Sum_probs=131.9
Q ss_pred CHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 047359 219 QDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVA 298 (440)
Q Consensus 219 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 298 (440)
+...+..+...+.+.|++++|...|++..+..+. +...+..+...+.+.|++++|...++...+.. +.+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 3344445555555555555555555555554332 44445555555555555555555555555442 223344555555
Q ss_pred HHHcC-----------CCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHH
Q 047359 299 SQCGK-----------GKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLL 367 (440)
Q Consensus 299 ~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 367 (440)
.+... |++++|...+++..+..+. +...+..+..++...|++++|+..|++..+.. .+...+..+.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 55555 8899999999998887554 67778888889999999999999999999887 5888899999
Q ss_pred HHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcccHHHHHHHHHHHH
Q 047359 368 DGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLKELRKAMKNHDEML 421 (440)
Q Consensus 368 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 421 (440)
.+|...|++++|+..|+++.+..|.++.++..+...+.+.|++++|...+++.-
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 999999999999999999999988888999999999999999999999888754
No 38
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.77 E-value=1.5e-18 Score=162.53 Aligned_cols=116 Identities=12% Similarity=0.126 Sum_probs=88.0
Q ss_pred ccchHHHHHHHhhcCcHHHHHHHHHHHH---hcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHH
Q 047359 185 LSGNDYVIQKLSDMGKTYAAEMIFKRAC---DEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAF 261 (440)
Q Consensus 185 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 261 (440)
..+|+.+|++|++.|++++|.++|++|. ..|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 4567777777777777777777776654 3467778888888888888888888888888888888888888888888
Q ss_pred HHHHHhcCCh-HHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 047359 262 VNVLCKEHQP-EEVCGLLRDVVERGYIPCAMELSRFVASQ 300 (440)
Q Consensus 262 ~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 300 (440)
|.++++.|+. ++|.++|++|.+.|+.||..+|+.++...
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~ 246 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEE 246 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChh
Confidence 8888777764 67777888888888888888777776544
No 39
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.76 E-value=4.5e-16 Score=140.87 Aligned_cols=376 Identities=9% Similarity=-0.020 Sum_probs=251.1
Q ss_pred HHHHHHccCCcchHHHHHHHHHhcCCccChHhHHHHHHHHHhccch---hHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 047359 18 VLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEI---RLASCLYGAMVRDGVSPNKFTWSLVAQILCR 94 (440)
Q Consensus 18 li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 94 (440)
+...+.+.|++++|.+.|+...+.| +..++..+...+...|+. ++|..+|++..+. ++..+..|...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 5667788899999999999998865 344555666666777777 8999999998753 55566677775555
Q ss_pred cC-----ChHHHHHHHhccc--CCchhHHHHHHHHHhcCChhH---HHHHHHHHhcCCCCCCchhhHHHHHHHHHhcCCh
Q 047359 95 SG-----KFEVVLGLLDSGI--YSSVMYNLVIDFYSKKGDFGA---AFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKT 164 (440)
Q Consensus 95 ~~-----~~~~a~~~~~~~~--~~~~~~~~li~~~~~~~~~~~---a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 164 (440)
.+ +.++|...|++.. .+...+..|...|...+..++ +.+.+....+ .| +......+...|...+.+
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~-~g---~~~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQA-AG---YPEAGLAQVLLYRTQGTY 157 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHH-HT---CTTHHHHHHHHHHHHTCG
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH-CC---CHHHHHHHHHHHHcCCCc
Confidence 55 7789999998877 445578888888887765444 4444444433 22 345666777778888876
Q ss_pred hhHHHHHHHHHhcCCCCcccccchHHHHHHHhhcC---cHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhh----ccHH
Q 047359 165 EVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMG---KTYAAEMIFKRACDEKIELQDDTCGCMLKALSKE----GRVK 237 (440)
Q Consensus 165 ~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~ 237 (440)
+.+......+.+.-...+ +..+..+...|...| +.++|.+.|++..+.+.. +...+..+...|... ++++
T Consensus 158 ~~~~~~a~~~~~~a~~~~--~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~ 234 (452)
T 3e4b_A 158 DQHLDDVERICKAALNTT--DICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEK 234 (452)
T ss_dssp GGGHHHHHHHHHHHTTTC--TTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHH
T ss_pred ccCHHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHH
Confidence 666655444444322233 557888899999999 999999999999888764 555556666677654 7899
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHH-H--HhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCC-----CHHHH
Q 047359 238 EAIQIYHLISERGITVRDSDYYAFVNV-L--CKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKG-----KWKEV 309 (440)
Q Consensus 238 ~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~a 309 (440)
+|...|+... .| +...+..+... + ...+++++|..+|+...+.| +...+..+...|. .| ++++|
T Consensus 235 ~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A 306 (452)
T 3e4b_A 235 TAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAA 306 (452)
T ss_dssp HHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHH
T ss_pred HHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHH
Confidence 9999999987 33 44566666666 4 46889999999999998876 5566777777776 45 99999
Q ss_pred HHHHHHHHhcCCCCchhhhHHHHHHHHc----CCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHh----cCcHHHHHH
Q 047359 310 EELLSAVLDKGLLLDSFCCSSLMEYYCS----NRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFK----DGRMEEAVR 381 (440)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~ 381 (440)
.+.|++.. .| +......+...|.. ..+.++|...|++..+.|. ......|...|.. ..+.++|..
T Consensus 307 ~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~ 379 (452)
T 3e4b_A 307 EAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYV 379 (452)
T ss_dssp HHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHH
T ss_pred HHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHH
Confidence 99999887 32 66677777777766 4489999999999988753 4456667777764 468999999
Q ss_pred HHHHHHHcCCCchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Q 047359 382 IFDYMKELKVVSSSSFVIVVSRLCHLKELRKAMKNHDEMLK 422 (440)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 422 (440)
+|+...+.|.++.......+......++..+|..+.++..+
T Consensus 380 ~~~~A~~~g~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 380 FSQLAKAQDTPEANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 99999998866444444444444455677888888776554
No 40
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.75 E-value=1.6e-18 Score=162.43 Aligned_cols=151 Identities=18% Similarity=0.136 Sum_probs=114.2
Q ss_pred CHHhHHHHHHHHhhhccHHHHHHHHHHHHH---cCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHH
Q 047359 219 QDDTCGCMLKALSKEGRVKEAIQIYHLISE---RGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSR 295 (440)
Q Consensus 219 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 295 (440)
-..||+++|++|++.|++++|.++|.+|.+ .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 345888999999999999999998877653 47888889999999999999999999999999988888899999999
Q ss_pred HHHHHHcCCC-HHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcC------HHhHHHHHH
Q 047359 296 FVASQCGKGK-WKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLD------VATYDVLLD 368 (440)
Q Consensus 296 l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~------~~~~~~l~~ 368 (440)
+|.++++.|+ .++|.++|++|.+.|+.||..+|++++..+.+. ..++..+++ ..+..|+ ..+...|.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 9988888887 477888899998888888988888887655443 333333333 2234433 334445556
Q ss_pred HHHhcC
Q 047359 369 GLFKDG 374 (440)
Q Consensus 369 ~~~~~g 374 (440)
.|.+.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 665554
No 41
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.74 E-value=2.5e-15 Score=126.81 Aligned_cols=248 Identities=10% Similarity=-0.050 Sum_probs=142.2
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhcCCCCcccccchHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCC--HHhHHHHHHH
Q 047359 152 SSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQ--DDTCGCMLKA 229 (440)
Q Consensus 152 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~ 229 (440)
......+...|++++|...+++..+.. |+. ...+..+..++...|++++|...+++..+....++ ...|..+...
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKLEAKK--YNS-PYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTT--CCC-STTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC--CCc-HHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 334445555566666666666555543 321 33555555566666666666666666555221111 2235566666
Q ss_pred HhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHH
Q 047359 230 LSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEV 309 (440)
Q Consensus 230 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 309 (440)
+...|++++|...|++..+.... +...+..+...+...|++++|...++...+.. +.+...+..+...+...+++++|
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666665432 44566666666667777777777776666542 23344455555223333477777
Q ss_pred HHHHHHHHhcCCCCchhhhHHHHHHHHcCCc---HHHHHHHHHHHHhcc-CCcC------HHhHHHHHHHHHhcCcHHHH
Q 047359 310 EELLSAVLDKGLLLDSFCCSSLMEYYCSNRQ---IDKAIALHIKIEKLK-GSLD------VATYDVLLDGLFKDGRMEEA 379 (440)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~p~------~~~~~~l~~~~~~~g~~~~a 379 (440)
.+.++++.+..+. +...+..+...+...|+ .++|...++++.+.. ..|+ ..+|..+...|...|++++|
T Consensus 162 ~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 162 DSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 7777777665432 34555556666666666 666777777666542 1122 24566677777777777777
Q ss_pred HHHHHHHHHcCCCchhhHHHHHHHHH
Q 047359 380 VRIFDYMKELKVVSSSSFVIVVSRLC 405 (440)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~l~~~~~ 405 (440)
.+.|+++.+..|.++.++..+.....
T Consensus 241 ~~~~~~al~~~p~~~~a~~~l~~~~~ 266 (272)
T 3u4t_A 241 DAAWKNILALDPTNKKAIDGLKMKLE 266 (272)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHC----
T ss_pred HHHHHHHHhcCccHHHHHHHhhhhhc
Confidence 77777777777766666655544443
No 42
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.73 E-value=2.2e-15 Score=125.69 Aligned_cols=213 Identities=13% Similarity=0.062 Sum_probs=149.3
Q ss_pred HHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 047359 220 DDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVAS 299 (440)
Q Consensus 220 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 299 (440)
...+..+...+...|++++|...++++.+.... +...+..+...+...|++++|...++.+.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS-SADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 345555666666667777777777666665422 45566666667777777777777777766653 2345566667777
Q ss_pred HHcCCCHHHHHHHHHHHHhcCCCC-chhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHH
Q 047359 300 QCGKGKWKEVEELLSAVLDKGLLL-DSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEE 378 (440)
Q Consensus 300 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 378 (440)
+...|++++|.+.++++...+..| +...+..+...+...|++++|.+.++++.+.... +...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHH
Confidence 777777777777777776622223 4556677777788888888888888887775433 56677788888888888888
Q ss_pred HHHHHHHHHHcCCCchhhHHHHHHHHHhcccHHHHHHHHHHHHHCCCCCCHHHHHHHhh
Q 047359 379 AVRIFDYMKELKVVSSSSFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDEATYKQVIS 437 (440)
Q Consensus 379 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~ 437 (440)
|...++++.+..+.+...+..+...+...|++++|.+.++++.+ ..|+...+..++.
T Consensus 194 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~l~ 250 (252)
T 2ho1_A 194 ARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKR--LYPGSLEYQEFQA 250 (252)
T ss_dssp HHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTSHHHHHHHT
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH--HCCCCHHHHHHHh
Confidence 88888888887777777788888888888888888888888877 4566666555543
No 43
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.73 E-value=2.2e-15 Score=127.18 Aligned_cols=246 Identities=12% Similarity=0.011 Sum_probs=198.7
Q ss_pred ccchHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCC--hhhHHHHH
Q 047359 185 LSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVR--DSDYYAFV 262 (440)
Q Consensus 185 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~ 262 (440)
...+......+...|++++|...+++..+..+. +...+..+..++...|++++|...+++..+.+..++ ...|..+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 345667788999999999999999999987654 566888899999999999999999999998432222 23488899
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHH
Q 047359 263 NVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQID 342 (440)
Q Consensus 263 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 342 (440)
..+...|++++|...++...+.. +.+...+..+...+...|++++|...+++..+..+. +...+..+...+...++++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-DPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999864 346678999999999999999999999999877433 5666777773444456999
Q ss_pred HHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCc---HHHHHHHHHHHHHcCCC--c------hhhHHHHHHHHHhcccHH
Q 047359 343 KAIALHIKIEKLKGSLDVATYDVLLDGLFKDGR---MEEAVRIFDYMKELKVV--S------SSSFVIVVSRLCHLKELR 411 (440)
Q Consensus 343 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~--~------~~~~~~l~~~~~~~g~~~ 411 (440)
+|.+.++++.+..+. +...+..+...+...|+ +++|...++++.+.... + ..++..+...|...|+++
T Consensus 160 ~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 160 KADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 999999999986443 56778888888888888 88899999988765422 1 257888999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHh
Q 047359 412 KAMKNHDEMLKMGHKPDEATYKQVI 436 (440)
Q Consensus 412 ~a~~~~~~m~~~~~~p~~~t~~~ll 436 (440)
+|.+.++++.+ +.|+.......+
T Consensus 239 ~A~~~~~~al~--~~p~~~~a~~~l 261 (272)
T 3u4t_A 239 KADAAWKNILA--LDPTNKKAIDGL 261 (272)
T ss_dssp HHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred HHHHHHHHHHh--cCccHHHHHHHh
Confidence 99999999998 567766554443
No 44
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.73 E-value=4e-15 Score=121.62 Aligned_cols=213 Identities=8% Similarity=0.011 Sum_probs=150.5
Q ss_pred HHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 047359 220 DDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVAS 299 (440)
Q Consensus 220 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 299 (440)
...+..+...+...|++++|...++.+.+.... +...+..+...+...|++++|...++.+.+.. +.+...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPK-NELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 445566666666667777777777666665432 45566666667777777777777777776653 3345566677777
Q ss_pred HHcC-CCHHHHHHHHHHHHhcCCCC-chhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHH
Q 047359 300 QCGK-GKWKEVEELLSAVLDKGLLL-DSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRME 377 (440)
Q Consensus 300 ~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 377 (440)
+... |++++|...++++.+.+..| +...+..+...+...|++++|...++++.+.... +...+..+...+.+.|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCCHH
Confidence 7777 77888887777777622222 3456777777888888888888888888775433 5677778888888888888
Q ss_pred HHHHHHHHHHHcCC-CchhhHHHHHHHHHhcccHHHHHHHHHHHHHCCCCCCHHHHHHHhh
Q 047359 378 EAVRIFDYMKELKV-VSSSSFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDEATYKQVIS 437 (440)
Q Consensus 378 ~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~ 437 (440)
+|...++++.+..+ .++..+..+...+...|+.++|..+++.+.+ ..|+......+++
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~p~~~~~~~~l~ 223 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA--NFPYSEELQTVLT 223 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH--hCCCCHHHHHHhc
Confidence 88888888888877 6777777777778888888888888888776 3577666665554
No 45
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.73 E-value=1.8e-15 Score=132.65 Aligned_cols=227 Identities=11% Similarity=0.059 Sum_probs=107.0
Q ss_pred hHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhcc-HHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 047359 188 NDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGR-VKEAIQIYHLISERGITVRDSDYYAFVNVLC 266 (440)
Q Consensus 188 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 266 (440)
|..+...+.+.|++++|+..++++.+..+. +...|+.+..++...|+ +++|+..|++..+.... +...|..+..++.
T Consensus 100 ~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~~~~ 177 (382)
T 2h6f_A 100 YDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVLVE 177 (382)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHH
Confidence 333444444444444444444444443332 34444444444444443 55555555554444332 3444444444444
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHc-CCcHHHH-
Q 047359 267 KEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCS-NRQIDKA- 344 (440)
Q Consensus 267 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a- 344 (440)
..|++++|+..++.+++.+ +-+...|..+..++...|++++|+..++++.+..+. +...|+.+..++.. .|..++|
T Consensus 178 ~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~eA~ 255 (382)
T 2h6f_A 178 WLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRAV 255 (382)
T ss_dssp HHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHHH
T ss_pred HccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcchHHH
Confidence 5555555555555554432 223344444444444455555555555555544333 44445555555544 3333444
Q ss_pred ----HHHHHHHHhccCCcCHHhHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcc---------c
Q 047359 345 ----IALHIKIEKLKGSLDVATYDVLLDGLFKDG--RMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLK---------E 409 (440)
Q Consensus 345 ----~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---------~ 409 (440)
++.+++.++..+. +...|..+...+...| ++++|.+.+.++ +..+.++.++..++.+|.+.| .
T Consensus 256 ~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~ 333 (382)
T 2h6f_A 256 LEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDI 333 (382)
T ss_dssp HHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHH
T ss_pred HHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHH
Confidence 3455555544332 3445555555555554 355555555555 444445555555555555542 1
Q ss_pred HHHHHHHHHHH
Q 047359 410 LRKAMKNHDEM 420 (440)
Q Consensus 410 ~~~a~~~~~~m 420 (440)
.++|+++++++
T Consensus 334 ~~~A~~~~~~l 344 (382)
T 2h6f_A 334 LNKALELCEIL 344 (382)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 35555555555
No 46
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.73 E-value=5.4e-15 Score=133.78 Aligned_cols=342 Identities=12% Similarity=-0.012 Sum_probs=236.2
Q ss_pred HHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh---HHHHHHHhccc-CCchhHHHHHHHHHhcC--
Q 047359 53 LLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSGKF---EVVLGLLDSGI-YSSVMYNLVIDFYSKKG-- 126 (440)
Q Consensus 53 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~-~~~~~~~~li~~~~~~~-- 126 (440)
+...+.+.|++++|.++|++..+.| +...+..|...|...|+. ++|...|++.. .+...+..+...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--C
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC
Confidence 5667788899999999999998876 334455566667778887 89999999877 55566777777566655
Q ss_pred ---ChhHHHHHHHHHhcCCCCCCchhhHHHHHHHHHhcCChh---hHHHHHHHHHhcCCCCcccccchHHHHHHHhhcCc
Q 047359 127 ---DFGAAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTE---VSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGK 200 (440)
Q Consensus 127 ---~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 200 (440)
++++|+..|++..+ .|. ...+..|...|...+..+ .+.+.+......|. ......+...|...+.
T Consensus 86 ~~~~~~~A~~~~~~Aa~-~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~-----~~a~~~Lg~~y~~~~~ 156 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFA-NGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY-----PEAGLAQVLLYRTQGT 156 (452)
T ss_dssp CHHHHHHHHHHHHHHHH-TTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC-----TTHHHHHHHHHHHHTC
T ss_pred CCcCHHHHHHHHHHHHH-CCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC-----HHHHHHHHHHHHcCCC
Confidence 78899999999987 443 226667777777666544 34555555544442 4566778888888884
Q ss_pred H----HHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhc---cHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc----C
Q 047359 201 T----YAAEMIFKRACDEKIELQDDTCGCMLKALSKEG---RVKEAIQIYHLISERGITVRDSDYYAFVNVLCKE----H 269 (440)
Q Consensus 201 ~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~ 269 (440)
+ +.+..+++..... ++..+..+...|...| +.++|+..|+...+.|.. +...+..+...|... +
T Consensus 157 ~~~~~~~a~~~~~~a~~~----~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~ 231 (452)
T 3e4b_A 157 YDQHLDDVERICKAALNT----TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTP 231 (452)
T ss_dssp GGGGHHHHHHHHHHHTTT----CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSC
T ss_pred cccCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCC
Confidence 4 4444455444433 4448888888999999 999999999999998854 555446677777554 7
Q ss_pred ChHHHHHHHHHHHHcCCCCChhhHHHHHHH-H--HcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCC-----cH
Q 047359 270 QPEEVCGLLRDVVERGYIPCAMELSRFVAS-Q--CGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNR-----QI 341 (440)
Q Consensus 270 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~ 341 (440)
++++|..+|+... .| +...+..+... + ...+++++|.+.|++..+.| +...+..+...|. .| ++
T Consensus 232 d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~ 303 (452)
T 3e4b_A 232 DEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADA 303 (452)
T ss_dssp CHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCH
T ss_pred CHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCH
Confidence 9999999999988 43 45566666665 3 45799999999999999876 6667777777776 45 99
Q ss_pred HHHHHHHHHHHhccCCcCHHhHHHHHHHHHh----cCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHh----cccHHHH
Q 047359 342 DKAIALHIKIEKLKGSLDVATYDVLLDGLFK----DGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCH----LKELRKA 413 (440)
Q Consensus 342 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a 413 (440)
++|.+.|++.. . -+...+..|...|.. ..+.++|...|++..+.| ++.+...+...|.. ..+.++|
T Consensus 304 ~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~G~g~~~d~~~A 377 (452)
T 3e4b_A 304 KAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG--QNSADFAIAQLFSQGKGTKPDPLNA 377 (452)
T ss_dssp HHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT--CTTHHHHHHHHHHSCTTBCCCHHHH
T ss_pred HHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC--hHHHHHHHHHHHHhCCCCCCCHHHH
Confidence 99999999888 3 366777788877776 449999999999998865 56677778887764 4589999
Q ss_pred HHHHHHHHHCCC
Q 047359 414 MKNHDEMLKMGH 425 (440)
Q Consensus 414 ~~~~~~m~~~~~ 425 (440)
...|+...+.|.
T Consensus 378 ~~~~~~A~~~g~ 389 (452)
T 3e4b_A 378 YVFSQLAKAQDT 389 (452)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHHCCC
Confidence 999999988774
No 47
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.72 E-value=1.5e-15 Score=123.20 Aligned_cols=114 Identities=21% Similarity=0.098 Sum_probs=47.7
Q ss_pred CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHH
Q 047359 269 HQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALH 348 (440)
Q Consensus 269 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 348 (440)
|++++|...++...+.. +.+...+..+...+...|++++|+..+++..+.. .+...+..+..+|...|++++|+..+
T Consensus 98 g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~ 174 (217)
T 2pl2_A 98 GYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQY 174 (217)
T ss_dssp HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 44444444444444432 1223344444444455555555555555554443 24444555555555555555555555
Q ss_pred HHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHH
Q 047359 349 IKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYM 386 (440)
Q Consensus 349 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 386 (440)
++..+..+. +...+..+...+...|++++|.+.|++.
T Consensus 175 ~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 175 AKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHSTT-CHHHHHHHHHHHTC--------------
T ss_pred HHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 555544322 3444455555555555555555555444
No 48
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.72 E-value=1.4e-15 Score=128.63 Aligned_cols=247 Identities=14% Similarity=0.011 Sum_probs=151.4
Q ss_pred CChhhHHHHHHHHHhcCC-CCcccccchHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHH
Q 047359 162 EKTEVSDRIVGLMVEKKL-LPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAI 240 (440)
Q Consensus 162 ~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 240 (440)
|++++|...++++.+... .+......+..+...+...|++++|...|+++.+..+. +...+..+...+...|++++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHHHHH
Confidence 455556666665555421 11111445555666666666666666666666655433 4556666666677777777777
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcC
Q 047359 241 QIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKG 320 (440)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 320 (440)
..|++..+..+. +...+..+...+...|++++|...++.+.+.. |+.......+..+...|++++|...+++.....
T Consensus 98 ~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 98 EAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 777766665432 45566666677777777777777777776643 333333333444455577777877777666543
Q ss_pred CCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCc---CHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhH
Q 047359 321 LLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSL---DVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSF 397 (440)
Q Consensus 321 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 397 (440)
. ++... ..++..+...++.++|.+.+.+..+..... +...+..+...|.+.|++++|...|+++.+..|.+...
T Consensus 175 ~-~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~- 251 (275)
T 1xnf_A 175 D-KEQWG-WNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE- 251 (275)
T ss_dssp C-CCSTH-HHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH-
T ss_pred C-cchHH-HHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH-
Confidence 2 23333 335666667777778888777776543211 24677888888888899999999888888876654333
Q ss_pred HHHHHHHHhcccHHHHHHHH
Q 047359 398 VIVVSRLCHLKELRKAMKNH 417 (440)
Q Consensus 398 ~~l~~~~~~~g~~~~a~~~~ 417 (440)
...++...|++++|++.+
T Consensus 252 --~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 252 --HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --HHHHHHHHHHHHHC----
T ss_pred --HHHHHHHHHHHHhhHHHH
Confidence 355667778888887765
No 49
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.72 E-value=3.6e-15 Score=130.81 Aligned_cols=249 Identities=7% Similarity=-0.015 Sum_probs=180.4
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCcccccchHHHHHHHhhcCc-HHHHHHHHHHHHhcCCCCCHHhHHHHH
Q 047359 149 STYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGK-TYAAEMIFKRACDEKIELQDDTCGCML 227 (440)
Q Consensus 149 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~ 227 (440)
..|..+...+.+.|++++|+..++++++.. |++ ..+|..+..++...|+ +++|+..++++....+. +...|..+.
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~--P~~-~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g 173 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN--AAN-YTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC--TTC-HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC--ccC-HHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHH
Confidence 355666666677777777777777777654 443 5667777777777775 77777777777776655 667777777
Q ss_pred HHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHc-CCCH
Q 047359 228 KALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCG-KGKW 306 (440)
Q Consensus 228 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~ 306 (440)
.++...|++++|+..|+++.+.... +...|..+..++...|++++|+..++.+++.+ +-+...|+.+..++.. .|..
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcc
Confidence 7888888888888888888776654 66777777778888888888888888887764 3356677777777777 4554
Q ss_pred HHH-----HHHHHHHHhcCCCCchhhhHHHHHHHHcCC--cHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcC-----
Q 047359 307 KEV-----EELLSAVLDKGLLLDSFCCSSLMEYYCSNR--QIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDG----- 374 (440)
Q Consensus 307 ~~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g----- 374 (440)
++| +..+++.....+. +...|..+..++...| ++++|++.+.++ +.. ..+...+..+...|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhccccc
Confidence 666 4778887776544 6677888888888877 688888888887 432 235677888888888764
Q ss_pred ----cHHHHHHHHHHH-HHcCCCchhhHHHHHHHHHh
Q 047359 375 ----RMEEAVRIFDYM-KELKVVSSSSFVIVVSRLCH 406 (440)
Q Consensus 375 ----~~~~a~~~~~~~-~~~~~~~~~~~~~l~~~~~~ 406 (440)
..++|+++|+++ .+.+|.....|..+...+..
T Consensus 329 ~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 258899999998 78877777777777666543
No 50
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.71 E-value=1.3e-15 Score=126.16 Aligned_cols=197 Identities=17% Similarity=0.136 Sum_probs=99.8
Q ss_pred hHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 047359 222 TCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQC 301 (440)
Q Consensus 222 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 301 (440)
.|..+...+...|++++|...|+++.+.... +...+..+...+...|++++|...++.+.+.. +.+...+..+...+.
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 102 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEENKE-DAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYV 102 (243)
T ss_dssp -----------------CCTTHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHH
Confidence 3444444445555555555555555443322 34444445555555555555555555554432 223444555555555
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHH
Q 047359 302 GKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVR 381 (440)
Q Consensus 302 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 381 (440)
..|++++|.+.++++.+.... +...+..+...+...|++++|...++++.+.... +...+..+...+.+.|++++|..
T Consensus 103 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~ 180 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN-DTEARFQFGMCLANEGMLDEALS 180 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHcCCHHHHHH
Confidence 555555555555555554322 4445555555666666666666666665554322 44555566666666666666666
Q ss_pred HHHHHHHcCCCchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Q 047359 382 IFDYMKELKVVSSSSFVIVVSRLCHLKELRKAMKNHDEMLK 422 (440)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 422 (440)
.++++.+..+.++.++..+..++...|++++|...++++.+
T Consensus 181 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 181 QFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 66666666555555666666666666666666666666655
No 51
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.71 E-value=6.3e-13 Score=124.38 Aligned_cols=422 Identities=9% Similarity=-0.027 Sum_probs=289.1
Q ss_pred CCChHhHHHHHHHHHccCCcchHHHHHHHHHhcCCccChHhHHHHHHHHHhccc---hhHHHHHHHHHHHcC-CCCChhh
Q 047359 9 DSQSDALSLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNE---IRLASCLYGAMVRDG-VSPNKFT 84 (440)
Q Consensus 9 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~-~~~~~~~ 84 (440)
+-|..+|..++..+.+.+.++.+..+|+.+...- +.+...|...+..-.+.++ ++.+.++|++.+... .+|++..
T Consensus 63 p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f-P~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~L 141 (679)
T 4e6h_A 63 PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF-PLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSL 141 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHH
T ss_pred cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHH
Confidence 4678899999999999999999999999999864 5677888888888888888 999999999998763 1378888
Q ss_pred HHHHHHHHHhcCCh--------HHHHHHHhccc--------CCchhHHHHHHHHHh---------cCChhHHHHHHHHHh
Q 047359 85 WSLVAQILCRSGKF--------EVVLGLLDSGI--------YSSVMYNLVIDFYSK---------KGDFGAAFDRLNEMC 139 (440)
Q Consensus 85 ~~~l~~~~~~~~~~--------~~a~~~~~~~~--------~~~~~~~~li~~~~~---------~~~~~~a~~~~~~~~ 139 (440)
|...+....+.++. +...++|+... .+...|...+..... .++++.+..+|++..
T Consensus 142 W~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL 221 (679)
T 4e6h_A 142 WLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL 221 (679)
T ss_dssp HHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHH
Confidence 88888776665553 33446666533 234567777765442 345778899999987
Q ss_pred cCCCCCCchhhHHHHHHHHHh-------------cCChhhHHHHHHHHHhc--CC---CCcc------------------
Q 047359 140 NGRNLTPGFSTYSSILDGARR-------------YEKTEVSDRIVGLMVEK--KL---LPKH------------------ 183 (440)
Q Consensus 140 ~~~~~~p~~~~~~~l~~~~~~-------------~~~~~~a~~~~~~~~~~--~~---~~~~------------------ 183 (440)
. .....-..+|......-.. ..+++.|...+.++... ++ .|..
T Consensus 222 ~-iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ 300 (679)
T 4e6h_A 222 C-QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQ 300 (679)
T ss_dssp T-SCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHH
T ss_pred h-CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHH
Confidence 5 2221122333322221111 11233344444443221 11 1110
Q ss_pred cccchHHHHHHHhhcC-------cHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHH-HHHHHHHHcCCCCCh
Q 047359 184 FLSGNDYVIQKLSDMG-------KTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAI-QIYHLISERGITVRD 255 (440)
Q Consensus 184 ~~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~ 255 (440)
....|...+..-...+ ..+.+..+|++.....+. +...|...+..+...|+.++|. .+|++..... +.+.
T Consensus 301 ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~-~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~ 378 (679)
T 4e6h_A 301 QLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCF-APEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSA 378 (679)
T ss_dssp HHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCH
Confidence 0123333343332222 134456778888776544 7788888888888899999996 9999998754 3356
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcC---------CCCC------------hhhHHHHHHHHHcCCCHHHHHHHHH
Q 047359 256 SDYYAFVNVLCKEHQPEEVCGLLRDVVERG---------YIPC------------AMELSRFVASQCGKGKWKEVEELLS 314 (440)
Q Consensus 256 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------~~~~------------~~~~~~l~~~~~~~~~~~~a~~~~~ 314 (440)
..+...+....+.|++++|..+|+.+.... ..|+ ...|...+....+.|+.+.|..+|.
T Consensus 379 ~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~ 458 (679)
T 4e6h_A 379 VLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFG 458 (679)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 667778888889999999999999987641 0131 2357777777778899999999999
Q ss_pred HHHhcCCCCchhhhHHHHHHHHcC-CcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCC-
Q 047359 315 AVLDKGLLLDSFCCSSLMEYYCSN-RQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVV- 392 (440)
Q Consensus 315 ~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~- 392 (440)
.+.+....+....|...+..-.+. ++.+.|.++|+...+.-. -+...|...+......|+.+.|..+|+++....++
T Consensus 459 ~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p-~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~ 537 (679)
T 4e6h_A 459 KCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFA-TDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDS 537 (679)
T ss_dssp HHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSST
T ss_pred HHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC-CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCH
Confidence 998761112233443333333344 458999999999998733 36667788888888899999999999999987763
Q ss_pred --chhhHHHHHHHHHhcccHHHHHHHHHHHHHCCCCCCHHHHHHHhh
Q 047359 393 --SSSSFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDEATYKQVIS 437 (440)
Q Consensus 393 --~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~ 437 (440)
....|...+..-.+.|+.+.+..+.+++.+. .|+......+.+
T Consensus 538 ~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~ 582 (679)
T 4e6h_A 538 HLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTN 582 (679)
T ss_dssp THHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHH
Confidence 5578888888888999999999999999983 566555554443
No 52
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.71 E-value=5.9e-15 Score=123.01 Aligned_cols=209 Identities=11% Similarity=-0.021 Sum_probs=141.4
Q ss_pred ccchHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 047359 185 LSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNV 264 (440)
Q Consensus 185 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 264 (440)
...+..+...+...|++++|...++++.+..+. +...+..+...+...|++++|...++++.+.... +...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS-SADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHH
Confidence 344555555666666666666666666554332 4556666666677777777777777776665432 45566666777
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHH
Q 047359 265 LCKEHQPEEVCGLLRDVVERGYIP-CAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDK 343 (440)
Q Consensus 265 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 343 (440)
+...|++++|..+++.+.+.+..| +...+..+...+...|++++|...++++.+.... +...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHH
Confidence 777777777777777776622223 4455666777777778888888888777766433 56677777788888888888
Q ss_pred HHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhH
Q 047359 344 AIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSF 397 (440)
Q Consensus 344 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 397 (440)
|...++++.+... .+...+..+...+...|+.++|.+.++++.+..+.++...
T Consensus 194 A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 246 (252)
T 2ho1_A 194 ARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQ 246 (252)
T ss_dssp HHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHH
T ss_pred HHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHH
Confidence 8888888776543 3566777777888888888888888888888776655443
No 53
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.70 E-value=1.9e-15 Score=125.29 Aligned_cols=214 Identities=12% Similarity=0.062 Sum_probs=148.7
Q ss_pred ccchHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 047359 185 LSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNV 264 (440)
Q Consensus 185 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 264 (440)
...+..+...+...|++++|...++++.+..+. +...+..+...+...|++++|...++++.+.... +...+..+...
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~ 100 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE-DAIPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYGAGNV 100 (243)
T ss_dssp -------------------CCTTHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHHHHHH
Confidence 445566666777777777777777777665443 5667777777777888888888888877776432 56677777778
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHH
Q 047359 265 LCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKA 344 (440)
Q Consensus 265 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 344 (440)
+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.... +...+..+...+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN-DTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHcCCHHHH
Confidence 888888888888888877654 345667777788888888888888888888776443 667778888888889999999
Q ss_pred HHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHH
Q 047359 345 IALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSR 403 (440)
Q Consensus 345 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 403 (440)
...++++.+.... +..++..+...|...|++++|.+.++++.+..+.++.++..+...
T Consensus 179 ~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 236 (243)
T 2q7f_A 179 LSQFAAVTEQDPG-HADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLL 236 (243)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC-
T ss_pred HHHHHHHHHhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHH
Confidence 9999888876433 577888888899999999999999999988887777666655443
No 54
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.70 E-value=2.2e-14 Score=117.23 Aligned_cols=211 Identities=9% Similarity=-0.064 Sum_probs=145.5
Q ss_pred ccchHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 047359 185 LSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNV 264 (440)
Q Consensus 185 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 264 (440)
...+..+...+...|++++|.+.++++.+..+. +...+..+...+...|++++|...++++.+.... +..++..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~ 85 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPK-NELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHHHH
Confidence 445555666666666666666666666655433 4556666677777777777777777777665432 45566667777
Q ss_pred HHhc-CChHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHH
Q 047359 265 LCKE-HQPEEVCGLLRDVVERGYIP-CAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQID 342 (440)
Q Consensus 265 ~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 342 (440)
+... |++++|...++.+.+.+..| +...+..+...+...|++++|...++++.+..+. +...+..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCCHH
Confidence 7777 77777777777776622122 2456667777777788888888888887766433 5667777888888888888
Q ss_pred HHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHH
Q 047359 343 KAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFV 398 (440)
Q Consensus 343 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 398 (440)
+|...++++.+.....+...+..+...+...|+.+.|..+++.+.+..|.++....
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 220 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQT 220 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHH
Confidence 88888888877654236666777777778888888888888888777766555443
No 55
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.70 E-value=6.2e-14 Score=118.33 Aligned_cols=222 Identities=15% Similarity=0.118 Sum_probs=135.1
Q ss_pred ccchHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhh----hccHHHHHHHHHHHHHcCCCCChhhHHH
Q 047359 185 LSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSK----EGRVKEAIQIYHLISERGITVRDSDYYA 260 (440)
Q Consensus 185 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 260 (440)
..++..+...+...|++++|...|++..+. -+...+..+...|.. .+++++|...|++..+.+ +...+..
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 79 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 79 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 334445555555556666666666555552 133455555555555 666666666666665554 4455555
Q ss_pred HHHHHHh----cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHc----CCCHHHHHHHHHHHHhcCCCCchhhhHHHH
Q 047359 261 FVNVLCK----EHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCG----KGKWKEVEELLSAVLDKGLLLDSFCCSSLM 332 (440)
Q Consensus 261 l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 332 (440)
+...+.. .+++++|...++...+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..+.
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 153 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILG 153 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHH
Confidence 5666666 666666666666666543 44555556666665 666666666666666653 344555555
Q ss_pred HHHHc----CCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHh----cCcHHHHHHHHHHHHHcCCCchhhHHHHHHHH
Q 047359 333 EYYCS----NRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFK----DGRMEEAVRIFDYMKELKVVSSSSFVIVVSRL 404 (440)
Q Consensus 333 ~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 404 (440)
..|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|.+.|++..+.++ +..+..+...|
T Consensus 154 ~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~ 228 (273)
T 1ouv_A 154 SLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQ 228 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHH
Confidence 56655 667777777777666642 34556666666666 6777777777777666543 55666666666
Q ss_pred Hh----cccHHHHHHHHHHHHHC
Q 047359 405 CH----LKELRKAMKNHDEMLKM 423 (440)
Q Consensus 405 ~~----~g~~~~a~~~~~~m~~~ 423 (440)
.. .+++++|.+.+++..+.
T Consensus 229 ~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 229 YNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HcCCCcccCHHHHHHHHHHHHHc
Confidence 66 67777777777776664
No 56
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.68 E-value=4.1e-15 Score=125.74 Aligned_cols=248 Identities=15% Similarity=-0.005 Sum_probs=183.8
Q ss_pred hcCChhHHHHHHHHHhcCCCCC-C-chhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCcccccchHHHHHHHhhcCcH
Q 047359 124 KKGDFGAAFDRLNEMCNGRNLT-P-GFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKT 201 (440)
Q Consensus 124 ~~~~~~~a~~~~~~~~~~~~~~-p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 201 (440)
..|++++|+..|+++.+..... | +...+..+...+...|++++|...++++.+.. |+. ...+..+...+...|++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~-~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR--PDM-PEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCC-HHHHHHHHHHHHHTTCH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC--CCc-HHHHHHHHHHHHHccCH
Confidence 4577889999999887721111 1 35577888888899999999999999988865 432 67888889999999999
Q ss_pred HHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 047359 202 YAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDV 281 (440)
Q Consensus 202 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 281 (440)
++|...+++..+..+. +...+..+..++...|++++|...++++.+.. |+.......+..+...|++++|...++..
T Consensus 94 ~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 94 DAAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 9999999998887554 57788888999999999999999999988864 33334444555556778999999999888
Q ss_pred HHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCC---chhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCc
Q 047359 282 VERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLL---DSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSL 358 (440)
Q Consensus 282 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 358 (440)
.... +++... ..++..+...++.++|...+++........ +...+..+...|...|++++|...++++.+.. |
T Consensus 171 ~~~~-~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p 246 (275)
T 1xnf_A 171 FEKS-DKEQWG-WNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--V 246 (275)
T ss_dssp HHHS-CCCSTH-HHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--C
T ss_pred HhcC-CcchHH-HHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--c
Confidence 7753 333333 346677777888889999988876543211 25678888899999999999999999998853 3
Q ss_pred CHHhHHHHHHHHHhcCcHHHHHHHH
Q 047359 359 DVATYDVLLDGLFKDGRMEEAVRIF 383 (440)
Q Consensus 359 ~~~~~~~l~~~~~~~g~~~~a~~~~ 383 (440)
+. +.....++...|++++|++.+
T Consensus 247 ~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 247 HN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp TT--CHHHHHHHHHHHHHHHC----
T ss_pred hh--HHHHHHHHHHHHHHHhhHHHH
Confidence 22 333455677888888887766
No 57
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.68 E-value=1.1e-13 Score=116.68 Aligned_cols=226 Identities=11% Similarity=0.045 Sum_probs=161.7
Q ss_pred chhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCcccccchHHHHHHHhh----cCcHHHHHHHHHHHHhcCCCCCHHh
Q 047359 147 GFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSD----MGKTYAAEMIFKRACDEKIELQDDT 222 (440)
Q Consensus 147 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 222 (440)
+..++..+...+...|++++|...|++..+.+ + ...+..+...+.. .+++++|...|++..+.+ +...
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~--~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a 76 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---E--NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNG 76 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---C--HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---C--HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHH
Confidence 34455566666667777777777777766621 1 4556666677777 777777777777776654 5566
Q ss_pred HHHHHHHHhh----hccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCChhhHH
Q 047359 223 CGCMLKALSK----EGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCK----EHQPEEVCGLLRDVVERGYIPCAMELS 294 (440)
Q Consensus 223 ~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 294 (440)
+..+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...++...+.+ +...+.
T Consensus 77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 150 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCT 150 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHH
Confidence 6777777777 777788887777777764 55667777777777 778888888888777754 445566
Q ss_pred HHHHHHHc----CCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHc----CCcHHHHHHHHHHHHhccCCcCHHhHHHH
Q 047359 295 RFVASQCG----KGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCS----NRQIDKAIALHIKIEKLKGSLDVATYDVL 366 (440)
Q Consensus 295 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 366 (440)
.+...+.. .+++++|...+++..+.+ +...+..+...|.. .+++++|.+.+++..+.+ +...+..+
T Consensus 151 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 224 (273)
T 1ouv_A 151 ILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNL 224 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHH
Confidence 66666766 788888888888887763 45666777777777 888888888888887753 25667777
Q ss_pred HHHHHh----cCcHHHHHHHHHHHHHcCCC
Q 047359 367 LDGLFK----DGRMEEAVRIFDYMKELKVV 392 (440)
Q Consensus 367 ~~~~~~----~g~~~~a~~~~~~~~~~~~~ 392 (440)
...|.. .+++++|.+.|++..+.++.
T Consensus 225 ~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 225 GAMQYNGEGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp HHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred HHHHHcCCCcccCHHHHHHHHHHHHHcCCH
Confidence 778887 88888888888888877654
No 58
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.66 E-value=3.3e-14 Score=112.26 Aligned_cols=174 Identities=11% Similarity=-0.002 Sum_probs=130.4
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHH
Q 047359 254 RDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLME 333 (440)
Q Consensus 254 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 333 (440)
+...|..+...+...|++++|...|++..+.. +-+...+..+...+...|++++|...+......... +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence 34566666677777777777777777766653 335556667777777777777777777777665443 5556666777
Q ss_pred HHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcccHHHH
Q 047359 334 YYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLKELRKA 413 (440)
Q Consensus 334 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 413 (440)
.+...++++.|.+.+.+..+..+. +...+..+...|.+.|++++|++.|+++.+.+|.++.++..+..+|.+.|++++|
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 778888888888888888776443 6677888888888888888888888888888888888888888888889999999
Q ss_pred HHHHHHHHHCCCCCCHHHH
Q 047359 414 MKNHDEMLKMGHKPDEATY 432 (440)
Q Consensus 414 ~~~~~~m~~~~~~p~~~t~ 432 (440)
++.|++.++ +.|+...|
T Consensus 161 ~~~~~~al~--~~p~~a~~ 177 (184)
T 3vtx_A 161 VKYFKKALE--KEEKKAKY 177 (184)
T ss_dssp HHHHHHHHH--TTHHHHHH
T ss_pred HHHHHHHHh--CCccCHHH
Confidence 999988887 46765544
No 59
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.66 E-value=4.1e-12 Score=118.96 Aligned_cols=392 Identities=9% Similarity=0.000 Sum_probs=271.1
Q ss_pred CcchHHHHHHHHHhcCCccChHhHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC---hHHHHH
Q 047359 27 LFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSGK---FEVVLG 103 (440)
Q Consensus 27 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~ 103 (440)
...+-+..|+.....+ +-|...|..++..+.+.+.++.+..+|+.+... ++.....|...+..-.+.|+ ++.+..
T Consensus 47 ~~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp CCSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 4566677778877776 569999999999999999999999999999886 45577889999998888898 999999
Q ss_pred HHhccc------CCchhHHHHHHHHHhcCCh--------hHHHHHHHHHhcCCCC-CCc-hhhHHHHHHHHH--------
Q 047359 104 LLDSGI------YSSVMYNLVIDFYSKKGDF--------GAAFDRLNEMCNGRNL-TPG-FSTYSSILDGAR-------- 159 (440)
Q Consensus 104 ~~~~~~------~~~~~~~~li~~~~~~~~~--------~~a~~~~~~~~~~~~~-~p~-~~~~~~l~~~~~-------- 159 (440)
+|++.. |++..|...+....+.++. +.+.++|+......|. .|+ ...|...+....
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ 204 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKF 204 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcH
Confidence 999976 4556677777666665554 3345788887664676 664 457777666443
Q ss_pred -hcCChhhHHHHHHHHHhcCCCCcccccchHH---HHHHHh----------hcCcHHHHHHHHHHHHhc--CCC------
Q 047359 160 -RYEKTEVSDRIVGLMVEKKLLPKHFLSGNDY---VIQKLS----------DMGKTYAAEMIFKRACDE--KIE------ 217 (440)
Q Consensus 160 -~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~---l~~~~~----------~~~~~~~a~~~~~~~~~~--~~~------ 217 (440)
..++.+.+..+|+..+.. +......+|.. ...... ...+++.|...+.++... ++.
T Consensus 205 eeq~~~~~~R~iy~raL~i--P~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~ 282 (679)
T 4e6h_A 205 EEQQRVQYIRKLYKTLLCQ--PMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPIT 282 (679)
T ss_dssp HHHHHHHHHHHHHHHHTTS--CCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSS
T ss_pred HHHhHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccc
Confidence 234567888999998853 11111222221 111110 112344455555543221 110
Q ss_pred ---------C--C------HHhHHHHHHHHhhhc-------cHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHH
Q 047359 218 ---------L--Q------DDTCGCMLKALSKEG-------RVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEE 273 (440)
Q Consensus 218 ---------~--~------~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 273 (440)
| + ...|...+.---..+ ..+.+..+|++.....+ .....|...+..+...|+.++
T Consensus 283 ~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p-~~~~lW~~ya~~~~~~~~~~~ 361 (679)
T 4e6h_A 283 LNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVC-FAPEIWFNMANYQGEKNTDST 361 (679)
T ss_dssp STTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHSCCTT
T ss_pred cccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHhcCcHHH
Confidence 1 0 123444444322221 23456678888877643 367788888888888999999
Q ss_pred HH-HHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCC---------CC------------chhhhHHH
Q 047359 274 VC-GLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGL---------LL------------DSFCCSSL 331 (440)
Q Consensus 274 a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------~~------------~~~~~~~l 331 (440)
|. .+++..... ++.+...+-..+......|++++|.++|+.+..... .| ....|...
T Consensus 362 a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y 440 (679)
T 4e6h_A 362 VITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVY 440 (679)
T ss_dssp HHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHH
Confidence 97 999999875 345556677788888889999999999999876410 13 12367778
Q ss_pred HHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhc-CcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcccH
Q 047359 332 MEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKD-GRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLKEL 410 (440)
Q Consensus 332 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 410 (440)
+....+.|+.+.|..+|.++.+....+....|...+..-.+. ++.+.|.++|+...+..+.++..|...+......|+.
T Consensus 441 ~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~ 520 (679)
T 4e6h_A 441 MNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEE 520 (679)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCH
Confidence 888888899999999999998761122334444443333444 4599999999999998777888888999988899999
Q ss_pred HHHHHHHHHHHHCC
Q 047359 411 RKAMKNHDEMLKMG 424 (440)
Q Consensus 411 ~~a~~~~~~m~~~~ 424 (440)
+.|..+|++.+...
T Consensus 521 ~~AR~lferal~~~ 534 (679)
T 4e6h_A 521 SQVKSLFESSIDKI 534 (679)
T ss_dssp HHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999998853
No 60
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.66 E-value=1.4e-14 Score=129.76 Aligned_cols=292 Identities=12% Similarity=0.011 Sum_probs=192.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCc-----hhhHHHHHHHHHhcCChhhHHHHHHHHHhc----CCCCcccc
Q 047359 115 YNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPG-----FSTYSSILDGARRYEKTEVSDRIVGLMVEK----KLLPKHFL 185 (440)
Q Consensus 115 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~ 185 (440)
+......+...|++++|...|++..+ ..|+ ...+..+...+...|++++|...+++.... +..|. ..
T Consensus 12 l~~~g~~~~~~g~~~~A~~~~~~al~---~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~ 87 (406)
T 3sf4_A 12 LALEGERLCKSGDCRAGVSFFEAAVQ---VGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG-EA 87 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---HCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH-HH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHh---cCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH-HH
Confidence 44445556666666666666666655 2222 234556666666677777777766665432 11111 14
Q ss_pred cchHHHHHHHhhcCcHHHHHHHHHHHHhcCCC-C----CHHhHHHHHHHHhhhcc--------------------HHHHH
Q 047359 186 SGNDYVIQKLSDMGKTYAAEMIFKRACDEKIE-L----QDDTCGCMLKALSKEGR--------------------VKEAI 240 (440)
Q Consensus 186 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~--------------------~~~a~ 240 (440)
.++..+...+...|++++|...+++..+.... + ...++..+...|...|+ +++|.
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 45666677777777777777777766543111 1 13366777777888888 88888
Q ss_pred HHHHHHHHc----CCC-CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----hhhHHHHHHHHHcCCCHHHHH
Q 047359 241 QIYHLISER----GIT-VRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYI-PC----AMELSRFVASQCGKGKWKEVE 310 (440)
Q Consensus 241 ~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~ 310 (440)
..+++..+. +.. ....++..+...+...|++++|...++...+.... ++ ..++..+...+...|++++|.
T Consensus 168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 247 (406)
T 3sf4_A 168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 247 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 887776442 111 12346777778888889999998888887653111 11 236777888888899999999
Q ss_pred HHHHHHHhcCCC----C-chhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCC-c----CHHhHHHHHHHHHhcCcHHHHH
Q 047359 311 ELLSAVLDKGLL----L-DSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGS-L----DVATYDVLLDGLFKDGRMEEAV 380 (440)
Q Consensus 311 ~~~~~~~~~~~~----~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-p----~~~~~~~l~~~~~~~g~~~~a~ 380 (440)
..+++....... + ...++..+...|...|++++|.+.+++..+.... + ...++..+...|...|++++|.
T Consensus 248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 327 (406)
T 3sf4_A 248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAM 327 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 999887643111 0 1456778888899999999999999988764211 1 1457788888999999999999
Q ss_pred HHHHHHHHcCC----C--chhhHHHHHHHHHhcccH
Q 047359 381 RIFDYMKELKV----V--SSSSFVIVVSRLCHLKEL 410 (440)
Q Consensus 381 ~~~~~~~~~~~----~--~~~~~~~l~~~~~~~g~~ 410 (440)
+.+++..+... . ...++..+...+...|+.
T Consensus 328 ~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 328 HFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 99998765421 1 345677788888777765
No 61
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.65 E-value=5.5e-15 Score=132.80 Aligned_cols=273 Identities=11% Similarity=-0.023 Sum_probs=138.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCch-----hhHHHHHHHHHhcCChhhHHHHHHHHHhcC----CCCcccc
Q 047359 115 YNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGF-----STYSSILDGARRYEKTEVSDRIVGLMVEKK----LLPKHFL 185 (440)
Q Consensus 115 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~ 185 (440)
+..+...+...|++++|...|++..+ ..|+. ..+..+...+...|++++|...+++..+.. ..|. ..
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~---~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~ 126 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQ---AGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLG-EA 126 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---HCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH-HH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHH---hcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchH-HH
Confidence 44455666667777777777777665 22331 345566666666777777777776666531 0111 13
Q ss_pred cchHHHHHHHhhcCcHHHHHHHHHHHHhcC-----CCCCHHhHHHHHHHHhhhcc-----------------HHHHHHHH
Q 047359 186 SGNDYVIQKLSDMGKTYAAEMIFKRACDEK-----IELQDDTCGCMLKALSKEGR-----------------VKEAIQIY 243 (440)
Q Consensus 186 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~ 243 (440)
..+..+...+...|++++|...+++..+.. ......++..+...|...|+ +++|...+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 445555666666666666666666554421 01122344455555555555 55555554
Q ss_pred HHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCC
Q 047359 244 HLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGY-IPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLL 322 (440)
Q Consensus 244 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 322 (440)
++..+.. ...+. ......+..+...+...|++++|...+++..+....
T Consensus 207 ~~al~~~-------------------------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 255 (411)
T 4a1s_A 207 QENLKLM-------------------------------RDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIARE 255 (411)
T ss_dssp HHHHHHH-------------------------------HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-------------------------------HHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 4433210 00000 011123444444455555555555555544432100
Q ss_pred -Cc----hhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCC-----cCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCC
Q 047359 323 -LD----SFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGS-----LDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVV 392 (440)
Q Consensus 323 -~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 392 (440)
++ ...+..+...|...|++++|.+.+++..+.... ....++..+...|...|++++|...+++..+....
T Consensus 256 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 335 (411)
T 4a1s_A 256 FGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQE 335 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 00 124455555566666666666666555542110 01344555666666666666666666655443211
Q ss_pred ------chhhHHHHHHHHHhcccHHHHHHHHHHHHH
Q 047359 393 ------SSSSFVIVVSRLCHLKELRKAMKNHDEMLK 422 (440)
Q Consensus 393 ------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 422 (440)
...++..+...|...|++++|...+++..+
T Consensus 336 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 336 LGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 233555666666666666666666666554
No 62
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.64 E-value=2.5e-14 Score=128.16 Aligned_cols=275 Identities=11% Similarity=-0.012 Sum_probs=212.3
Q ss_pred CchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCcc---cccchHHHHHHHhhcCcHHHHHHHHHHHHhc----CCCC
Q 047359 146 PGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKH---FLSGNDYVIQKLSDMGKTYAAEMIFKRACDE----KIEL 218 (440)
Q Consensus 146 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~ 218 (440)
+....+......+...|++++|...+++..+.. |++ ....+..+...+...|++++|...+++.... +..|
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 455566777888999999999999999999874 332 1246788899999999999999999987543 1111
Q ss_pred -CHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCC-C----ChhhHHHHHHHHHhcCC--------------------hH
Q 047359 219 -QDDTCGCMLKALSKEGRVKEAIQIYHLISERGIT-V----RDSDYYAFVNVLCKEHQ--------------------PE 272 (440)
Q Consensus 219 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~--------------------~~ 272 (440)
...++..+...+...|++++|...+++..+.... + ...++..+...+...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 2457788889999999999999999987654211 1 13477888888999999 99
Q ss_pred HHHHHHHHHHHc----CC-CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCC-Cc----hhhhHHHHHHHHcCCcHH
Q 047359 273 EVCGLLRDVVER----GY-IPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLL-LD----SFCCSSLMEYYCSNRQID 342 (440)
Q Consensus 273 ~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~ 342 (440)
+|...++...+. +. +....++..+...+...|++++|...+++..+.... ++ ..++..+...|...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 999998887542 11 112346778888899999999999999988753211 11 237788888999999999
Q ss_pred HHHHHHHHHHhccCC-cC----HHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCC------chhhHHHHHHHHHhcccHH
Q 047359 343 KAIALHIKIEKLKGS-LD----VATYDVLLDGLFKDGRMEEAVRIFDYMKELKVV------SSSSFVIVVSRLCHLKELR 411 (440)
Q Consensus 343 ~a~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~ 411 (440)
+|...+++..+.... ++ ..++..+...|...|++++|...++++.+.... ...++..+...|...|+++
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 999999998754211 11 457788899999999999999999988764322 2568889999999999999
Q ss_pred HHHHHHHHHHH
Q 047359 412 KAMKNHDEMLK 422 (440)
Q Consensus 412 ~a~~~~~~m~~ 422 (440)
+|...+++..+
T Consensus 325 ~A~~~~~~al~ 335 (406)
T 3sf4_A 325 QAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998765
No 63
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.62 E-value=5.1e-14 Score=128.24 Aligned_cols=214 Identities=11% Similarity=-0.029 Sum_probs=170.7
Q ss_pred HHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccH-HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHH
Q 047359 201 TYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRV-KEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLR 279 (440)
Q Consensus 201 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 279 (440)
++++...++....... .+...+..+...+...|++ ++|+..|++..+.... +...+..+..+|...|++++|...++
T Consensus 84 ~~~al~~l~~~~~~~~-~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQ-VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCC-CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCc-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4556666665554433 3667777788888888888 8888888888776543 56778888888888888888888888
Q ss_pred HHHHcCCCCChhhHHHHHHHHHcC---------CCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcC--------CcHH
Q 047359 280 DVVERGYIPCAMELSRFVASQCGK---------GKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSN--------RQID 342 (440)
Q Consensus 280 ~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~ 342 (440)
...+.. |+...+..+...+... |++++|...+++..+..+. +...|..+..+|... |+++
T Consensus 162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHH
Confidence 887754 5667778888888888 8899999999988887544 677888888888888 8899
Q ss_pred HHHHHHHHHHhccCC--cCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcccHHHHHHHHHH
Q 047359 343 KAIALHIKIEKLKGS--LDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLKELRKAMKNHDE 419 (440)
Q Consensus 343 ~a~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 419 (440)
+|++.|++..+.... -+...|..+..+|...|++++|.+.|+++.+..|.++.++..+..++...|++++|++.+.+
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999886431 27788899999999999999999999999999888888899999999999999999876543
No 64
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.62 E-value=4.2e-14 Score=127.04 Aligned_cols=277 Identities=13% Similarity=0.077 Sum_probs=179.8
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHhccc---CCc-----hhHHHHHHHHHhcCChhHHHHHHHHHhcC---CCCCC-chhh
Q 047359 83 FTWSLVAQILCRSGKFEVVLGLLDSGI---YSS-----VMYNLVIDFYSKKGDFGAAFDRLNEMCNG---RNLTP-GFST 150 (440)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~-----~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~p-~~~~ 150 (440)
..+..+...+...|++++|...|++.. |+. .++..+...+...|++++|...|++..+. .+..| ....
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 445567788899999999999999987 442 46888999999999999999999998651 11122 3457
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcCC----CCcccccchHHHHHHHhhcCc-----------------HHHHHHHHH
Q 047359 151 YSSILDGARRYEKTEVSDRIVGLMVEKKL----LPKHFLSGNDYVIQKLSDMGK-----------------TYAAEMIFK 209 (440)
Q Consensus 151 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~ 209 (440)
+..+...+...|++++|...+++..+... .|. ...++..+...+...|+ +++|.+.++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLS-EGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH-HHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHH-HHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 78888899999999999999999887521 122 25578888999999999 777877777
Q ss_pred HHHhcC----C-CCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 047359 210 RACDEK----I-ELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVER 284 (440)
Q Consensus 210 ~~~~~~----~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 284 (440)
+..+.. . .....++..+...+...|++++|...+++..+..... ..
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~---------------------------- 258 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF-GD---------------------------- 258 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TC----------------------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc-CC----------------------------
Confidence 654321 0 0112244444445555555555555555443321000 00
Q ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCC-----CchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCC--
Q 047359 285 GYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLL-----LDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGS-- 357 (440)
Q Consensus 285 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-- 357 (440)
.......+..+...+...|++++|...+++....... ....++..+...|...|++++|.+.+++..+....
T Consensus 259 -~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 337 (411)
T 4a1s_A 259 -RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG 337 (411)
T ss_dssp -HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred -cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 0000124455555666666666666666655432110 11345666777777888888888877777653111
Q ss_pred ---cCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 047359 358 ---LDVATYDVLLDGLFKDGRMEEAVRIFDYMKELK 390 (440)
Q Consensus 358 ---p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 390 (440)
....++..+...|.+.|++++|.+.+++..+..
T Consensus 338 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 373 (411)
T 4a1s_A 338 DRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLA 373 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 113466777888888888888888888877653
No 65
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.62 E-value=4.1e-14 Score=123.20 Aligned_cols=277 Identities=12% Similarity=-0.002 Sum_probs=155.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCc-----hhhHHHHHHHHHhcCChhhHHHHHHHHHhcCC---CCccccc
Q 047359 115 YNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPG-----FSTYSSILDGARRYEKTEVSDRIVGLMVEKKL---LPKHFLS 186 (440)
Q Consensus 115 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~ 186 (440)
+......+...|++++|...|+++.+ ..|+ ...+..+...+...|++++|...+++..+... .+.....
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~---~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQ---VGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---HCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHh---hCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 33444555666666666666666655 2232 23455555566666666666666666544210 0100133
Q ss_pred chHHHHHHHhhcCcHHHHHHHHHHHHhcCCC-CC----HHhHHHHHHHHhhhcc-------------HHHHHHHHHHHHH
Q 047359 187 GNDYVIQKLSDMGKTYAAEMIFKRACDEKIE-LQ----DDTCGCMLKALSKEGR-------------VKEAIQIYHLISE 248 (440)
Q Consensus 187 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~-------------~~~a~~~~~~~~~ 248 (440)
++..+...+...|++++|...+++..+.... ++ ..++..+...+...|+ .+++...
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~------ 158 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNA------ 158 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHH------
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHH------
Confidence 4444455555555555555555544332110 01 1133344444444444 0000000
Q ss_pred cCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc----CC-CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCC-
Q 047359 249 RGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVER----GY-IPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLL- 322 (440)
Q Consensus 249 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~- 322 (440)
+++|...++...+. +. ......+..+...+...|++++|...+++..+....
T Consensus 159 ----------------------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 216 (338)
T 3ro2_A 159 ----------------------LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF 216 (338)
T ss_dssp ----------------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence 44444444443221 10 111234555666666677777777777666532110
Q ss_pred ----CchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCC-cC----HHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCC-
Q 047359 323 ----LDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGS-LD----VATYDVLLDGLFKDGRMEEAVRIFDYMKELKVV- 392 (440)
Q Consensus 323 ----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~- 392 (440)
....++..+...+...|++++|.+.+++..+.... ++ ..++..+...+...|++++|...++++.+..+.
T Consensus 217 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 296 (338)
T 3ro2_A 217 GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 296 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence 11236667777888888888888888877653211 11 456777888888999999999998887654322
Q ss_pred -----chhhHHHHHHHHHhcccHHHHHHHHHHHHH
Q 047359 393 -----SSSSFVIVVSRLCHLKELRKAMKNHDEMLK 422 (440)
Q Consensus 393 -----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 422 (440)
...++..+...+.+.|++++|...+++..+
T Consensus 297 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 297 KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 245777888899999999999999998887
No 66
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.61 E-value=1.1e-12 Score=112.61 Aligned_cols=221 Identities=8% Similarity=-0.083 Sum_probs=115.5
Q ss_pred hhHHHHHHHHHhcCCCCcccccchHHHHHHHhh-------cCcH-------HHHHHHHHHHHhc-CCCCCHHhHHHHHHH
Q 047359 165 EVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSD-------MGKT-------YAAEMIFKRACDE-KIELQDDTCGCMLKA 229 (440)
Q Consensus 165 ~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~a~~~~~~~~~~-~~~~~~~~~~~l~~~ 229 (440)
++|..+|++.+... |++ ...|..++..+.. .|++ ++|..+|++..+. .+. +...|..++..
T Consensus 33 ~~a~~~~~~al~~~--p~~-~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~-~~~~~~~~~~~ 108 (308)
T 2ond_A 33 KRVMFAYEQCLLVL--GHH-PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK-NMLLYFAYADY 108 (308)
T ss_dssp HHHHHHHHHHHHHH--TTC-HHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCC-HHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcc-cHHHHHHHHHH
Confidence 45556666666543 332 4455555555542 3553 5666666666552 222 44456666666
Q ss_pred HhhhccHHHHHHHHHHHHHcCCCCChh-hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHH-cCCCHH
Q 047359 230 LSKEGRVKEAIQIYHLISERGITVRDS-DYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQC-GKGKWK 307 (440)
Q Consensus 230 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~ 307 (440)
+.+.|++++|..+|++..+..+. +.. .|..+...+.+.|++++|..+|+...+.. +++...|........ ..|+++
T Consensus 109 ~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 109 EESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp HHHTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHH
T ss_pred HHhcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHH
Confidence 66666666666666666653221 122 55555555666666666666666665542 122233322222211 245666
Q ss_pred HHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhcc-CCc--CHHhHHHHHHHHHhcCcHHHHHHHHH
Q 047359 308 EVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLK-GSL--DVATYDVLLDGLFKDGRMEEAVRIFD 384 (440)
Q Consensus 308 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~ 384 (440)
+|..+|++..+..+. +...|..++..+.+.|+.++|..+|++..... ..| ....|..++..+.+.|+.+.|..+++
T Consensus 187 ~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~ 265 (308)
T 2ond_A 187 VAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 265 (308)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 666666665554322 44555555555556666666666666665542 222 23455555555555666666666666
Q ss_pred HHHHcCCC
Q 047359 385 YMKELKVV 392 (440)
Q Consensus 385 ~~~~~~~~ 392 (440)
++.+..|.
T Consensus 266 ~a~~~~p~ 273 (308)
T 2ond_A 266 RRFTAFRE 273 (308)
T ss_dssp HHHHHTTT
T ss_pred HHHHHccc
Confidence 66555554
No 67
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.61 E-value=2.4e-13 Score=120.83 Aligned_cols=231 Identities=10% Similarity=-0.035 Sum_probs=174.5
Q ss_pred HHHHHhhcCcHHHHHHHHHHHHhcC----CCC-CHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCC------CChhhHH
Q 047359 191 VIQKLSDMGKTYAAEMIFKRACDEK----IEL-QDDTCGCMLKALSKEGRVKEAIQIYHLISERGIT------VRDSDYY 259 (440)
Q Consensus 191 l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~ 259 (440)
....+...|++++|...+++..+.- ..+ ...++..+...|...|+++.|...+++..+.... ....++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 5677788899999999999887641 111 2457888888999999999999999887664111 1235678
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCC-C----ChhhHHHHHHHHHcCCCHHHHHHHHHHHHhc----CC-CCchhhhH
Q 047359 260 AFVNVLCKEHQPEEVCGLLRDVVERGYI-P----CAMELSRFVASQCGKGKWKEVEELLSAVLDK----GL-LLDSFCCS 329 (440)
Q Consensus 260 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~ 329 (440)
.+...|...|++++|...++...+.... + ...++..+...|...|++++|...+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8888999999999999999988753111 1 1247788899999999999999999998762 22 33466788
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHhcc----CCcCHHhHHHHHHHHHhcCc---HHHHHHHHHHHHHcCCCchhhHHHHHH
Q 047359 330 SLMEYYCSNRQIDKAIALHIKIEKLK----GSLDVATYDVLLDGLFKDGR---MEEAVRIFDYMKELKVVSSSSFVIVVS 402 (440)
Q Consensus 330 ~l~~~~~~~~~~~~a~~~~~~~~~~~----~~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~l~~ 402 (440)
.+...|...|++++|.+.+++..+.. -......+..+...+...|+ .++|..++++... .+.....+..+..
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~-~~~~~~~~~~la~ 347 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKML-YADLEDFAIDVAK 347 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcC-HHHHHHHHHHHHH
Confidence 88999999999999999999887642 11122345678888889998 7778877776611 1114567888999
Q ss_pred HHHhcccHHHHHHHHHHHHH
Q 047359 403 RLCHLKELRKAMKNHDEMLK 422 (440)
Q Consensus 403 ~~~~~g~~~~a~~~~~~m~~ 422 (440)
.|...|++++|...+++..+
T Consensus 348 ~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 348 YYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999999875
No 68
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.60 E-value=9.2e-14 Score=120.94 Aligned_cols=277 Identities=13% Similarity=0.061 Sum_probs=175.0
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHhccc---CC-----chhHHHHHHHHHhcCChhHHHHHHHHHhcC---CCCCC-chhh
Q 047359 83 FTWSLVAQILCRSGKFEVVLGLLDSGI---YS-----SVMYNLVIDFYSKKGDFGAAFDRLNEMCNG---RNLTP-GFST 150 (440)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~-----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~p-~~~~ 150 (440)
..+......+...|++++|...|++.. |+ ...+..+...+...|++++|.+.+++..+. .+..| ....
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 345566778899999999999999977 44 356888999999999999999999997651 11122 2457
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcCCC---CcccccchHHHHHHHhhcCc--------------------HHHHHHH
Q 047359 151 YSSILDGARRYEKTEVSDRIVGLMVEKKLL---PKHFLSGNDYVIQKLSDMGK--------------------TYAAEMI 207 (440)
Q Consensus 151 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~--------------------~~~a~~~ 207 (440)
+..+...+...|++++|...+++..+.... +.....++..+...+...|+ +++|.+.
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 788888999999999999999998875321 11112367778888888888 7777777
Q ss_pred HHHHHhc----CC-CCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 047359 208 FKRACDE----KI-ELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVV 282 (440)
Q Consensus 208 ~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 282 (440)
+++.... +. .....++..+...+...|++++|...+++..+....
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------------------------------ 215 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE------------------------------ 215 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH------------------------------
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh------------------------------
Confidence 7665432 00 001223444444444555555555554444332100
Q ss_pred HcCC-CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCC-----CchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccC
Q 047359 283 ERGY-IPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLL-----LDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKG 356 (440)
Q Consensus 283 ~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 356 (440)
.+. .....++..+...+...|++++|...+++....... ....++..+...|...|++++|...+++..+...
T Consensus 216 -~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 294 (338)
T 3ro2_A 216 -FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 294 (338)
T ss_dssp -HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred -cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 000 001124455555566666666666666655432110 0134566667777788888888887777765321
Q ss_pred C-----cCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 047359 357 S-----LDVATYDVLLDGLFKDGRMEEAVRIFDYMKELK 390 (440)
Q Consensus 357 ~-----p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 390 (440)
. ....++..+...|.+.|++++|...++++.+..
T Consensus 295 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 333 (338)
T 3ro2_A 295 ELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 333 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 1 113466777888888888888888888877653
No 69
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.59 E-value=6.1e-13 Score=104.87 Aligned_cols=170 Identities=15% Similarity=0.055 Sum_probs=113.6
Q ss_pred CHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 047359 219 QDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVA 298 (440)
Q Consensus 219 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 298 (440)
++.+|..+...|.+.|++++|+..|++..+..+. +...+..+..++.+.|++++|...+....... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 4456666666666667777777777666665433 45566666666667777777777776666543 234445555566
Q ss_pred HHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHH
Q 047359 299 SQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEE 378 (440)
Q Consensus 299 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 378 (440)
.+...++++.+...+.+.....+. +...+..+...|...|++++|++.|++..+..+. +..+|..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHH
Confidence 666677777777777777665433 5566667777777777777777777777765443 56677777777777777777
Q ss_pred HHHHHHHHHHcCCC
Q 047359 379 AVRIFDYMKELKVV 392 (440)
Q Consensus 379 a~~~~~~~~~~~~~ 392 (440)
|++.|+++.+.+|.
T Consensus 160 A~~~~~~al~~~p~ 173 (184)
T 3vtx_A 160 AVKYFKKALEKEEK 173 (184)
T ss_dssp HHHHHHHHHHTTHH
T ss_pred HHHHHHHHHhCCcc
Confidence 77777777776544
No 70
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.58 E-value=2.4e-12 Score=110.45 Aligned_cols=181 Identities=10% Similarity=0.013 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHc-CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hh-hHHHHHHHHHcCCCHHHHHHHH
Q 047359 237 KEAIQIYHLISER-GITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPC-AM-ELSRFVASQCGKGKWKEVEELL 313 (440)
Q Consensus 237 ~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~~~~~~a~~~~ 313 (440)
++|..+|++..+. .+ -+...|..++..+.+.|++++|..+|+.+.+. .|+ .. .|..++..+.+.|++++|..+|
T Consensus 81 ~~A~~~~~rAl~~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~ 157 (308)
T 2ond_A 81 DEAANIYERAISTLLK-KNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHH
Confidence 4555555555442 21 13334444555555555555555555555442 222 11 4444444444455555555555
Q ss_pred HHHHhcCCCCchhhhHHHHHHH-HcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHc---
Q 047359 314 SAVLDKGLLLDSFCCSSLMEYY-CSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKEL--- 389 (440)
Q Consensus 314 ~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--- 389 (440)
++..+..+. +...|....... ...|+.++|..+|++..+..+. +...|..++..+.+.|+.++|..+|+++.+.
T Consensus 158 ~~a~~~~p~-~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l 235 (308)
T 2ond_A 158 KKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHhcCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCC
Confidence 555443221 222222222111 1235555555555555443222 3444445555555555555555555555543
Q ss_pred CCC-chhhHHHHHHHHHhcccHHHHHHHHHHHHH
Q 047359 390 KVV-SSSSFVIVVSRLCHLKELRKAMKNHDEMLK 422 (440)
Q Consensus 390 ~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 422 (440)
.+. ....|..++..+.+.|+.++|..+++++.+
T Consensus 236 ~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 111 333444444444455555555555555444
No 71
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.58 E-value=2.8e-14 Score=122.85 Aligned_cols=201 Identities=11% Similarity=0.010 Sum_probs=104.5
Q ss_pred hHHHHHHHHhhhccHHHHHHHHHHHHHc------C-CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc------CC-C
Q 047359 222 TCGCMLKALSKEGRVKEAIQIYHLISER------G-ITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVER------GY-I 287 (440)
Q Consensus 222 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~ 287 (440)
.+..+...|...|++++|...+++..+. + ......++..+...+...|++++|...++.+.+. +. +
T Consensus 71 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 150 (311)
T 3nf1_A 71 MLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHP 150 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCCh
Confidence 3444444555555555555555444332 1 1112334455555555566666666555555432 11 1
Q ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHhc------CCCC-chhhhHHHHHHHHcCCcHHHHHHHHHHHHhcc-----
Q 047359 288 PCAMELSRFVASQCGKGKWKEVEELLSAVLDK------GLLL-DSFCCSSLMEYYCSNRQIDKAIALHIKIEKLK----- 355 (440)
Q Consensus 288 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----- 355 (440)
.....+..+...+...|++++|...++++.+. +..| ...++..+...|...|++++|.+.++++.+..
T Consensus 151 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 230 (311)
T 3nf1_A 151 DVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREF 230 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 22334555666666667777776666666543 1111 23456666667777777777777777766431
Q ss_pred --CCcCH-------HhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Q 047359 356 --GSLDV-------ATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLKELRKAMKNHDEMLK 422 (440)
Q Consensus 356 --~~p~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 422 (440)
..+.. ..+..+...+...+.+.++...++......+....++..+..+|.+.|++++|.+.+++..+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 231 GSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp C------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 11111 12222233334455566666677777666555777888899999999999999999988876
No 72
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.58 E-value=2.8e-13 Score=120.33 Aligned_cols=232 Identities=9% Similarity=-0.069 Sum_probs=148.2
Q ss_pred HHHHHhcCChhhHHHHHHHHHhcCC-CCc--ccccchHHHHHHHhhcCcHHHHHHHHHHHHhcCCC------CCHHhHHH
Q 047359 155 LDGARRYEKTEVSDRIVGLMVEKKL-LPK--HFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIE------LQDDTCGC 225 (440)
Q Consensus 155 ~~~~~~~~~~~~a~~~~~~~~~~~~-~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~~ 225 (440)
...+...|++++|...+++..+.-. .++ ....++..+...+...|+++.|...+.+..+.... ....+++.
T Consensus 110 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 189 (383)
T 3ulq_A 110 GMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL 189 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 3345556666666666666654310 011 01345566666666677777777666665542111 11346667
Q ss_pred HHHHHhhhccHHHHHHHHHHHHHcCCC-----CChhhHHHHHHHHHhcCChHHHHHHHHHHHHc----CC-CCChhhHHH
Q 047359 226 MLKALSKEGRVKEAIQIYHLISERGIT-----VRDSDYYAFVNVLCKEHQPEEVCGLLRDVVER----GY-IPCAMELSR 295 (440)
Q Consensus 226 l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~ 295 (440)
+...|...|++++|...+++..+.... ....++..+...+...|++++|...+++..+. +. +....++..
T Consensus 190 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 269 (383)
T 3ulq_A 190 FATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFL 269 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Confidence 777788888888888888776543111 11236777778888888888888888887662 22 334556777
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhcC----CCCchhhhHHHHHHHHcCCc---HHHHHHHHHHHHhccCCc-CHHhHHHHH
Q 047359 296 FVASQCGKGKWKEVEELLSAVLDKG----LLLDSFCCSSLMEYYCSNRQ---IDKAIALHIKIEKLKGSL-DVATYDVLL 367 (440)
Q Consensus 296 l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~p-~~~~~~~l~ 367 (440)
+...+...|++++|...+++..+.. -......+..+...|...|+ .++|+.++++. +..| ....+..+.
T Consensus 270 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la 346 (383)
T 3ulq_A 270 ITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVA 346 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHH
Confidence 8888888888888888888776431 11122235667777888888 66677766655 2222 334677788
Q ss_pred HHHHhcCcHHHHHHHHHHHHHc
Q 047359 368 DGLFKDGRMEEAVRIFDYMKEL 389 (440)
Q Consensus 368 ~~~~~~g~~~~a~~~~~~~~~~ 389 (440)
..|...|++++|...+++..+.
T Consensus 347 ~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 347 KYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHH
Confidence 8899999999999999887653
No 73
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.52 E-value=2.3e-12 Score=105.39 Aligned_cols=206 Identities=10% Similarity=-0.007 Sum_probs=155.3
Q ss_pred CCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHH
Q 047359 218 LQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFV 297 (440)
Q Consensus 218 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 297 (440)
.|+..+......+...|++++|...|++..+....++...+..+..++...|++++|...++...+.. +.+...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 35678888888899999999999999999887764577777778888999999999999999988764 33566788888
Q ss_pred HHHHcCCCHHHHHHHHHHHHhcCCCCch-------hhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcC---HHhHHHHH
Q 047359 298 ASQCGKGKWKEVEELLSAVLDKGLLLDS-------FCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLD---VATYDVLL 367 (440)
Q Consensus 298 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~---~~~~~~l~ 367 (440)
..+...|++++|...+++..+..+. +. ..|..+...+...|++++|++.+++..+. .|+ ...+..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence 8899999999999999999876543 34 45777777888899999999999998875 444 45677777
Q ss_pred HHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcccHHHHHHHHHHHHHCCCCCCHHHHHHHh
Q 047359 368 DGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDEATYKQVI 436 (440)
Q Consensus 368 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll 436 (440)
.+|...| ...++++...+..++..+.... ....+.+++|+..+++..+ +.|+......++
T Consensus 161 ~~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~--l~p~~~~~~~~l 220 (228)
T 4i17_A 161 VLFYNNG-----ADVLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVT--LSPNRTEIKQMQ 220 (228)
T ss_dssp HHHHHHH-----HHHHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhh--cCCCCHHHHHHH
Confidence 7775544 3445666655544444444333 3456778999999999998 567766554444
No 74
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.52 E-value=9.9e-13 Score=119.76 Aligned_cols=195 Identities=8% Similarity=-0.101 Sum_probs=103.6
Q ss_pred ccchHHHHHHHhhcCcH-HHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 047359 185 LSGNDYVIQKLSDMGKT-YAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVN 263 (440)
Q Consensus 185 ~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 263 (440)
...+..+...+...|++ ++|++.|++..+..+. +...|..+..+|...|++++|...|++..+.. |+...+..+..
T Consensus 102 a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~lg~ 178 (474)
T 4abn_A 102 AQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC--KNKVSLQNLSM 178 (474)
T ss_dssp HHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC--CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCHHHHHHHHH
Confidence 33444444444444444 4444444444443322 34445555555555555555555555554443 23344444455
Q ss_pred HHHhc---------CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcC--------CCHHHHHHHHHHHHhcCCC--Cc
Q 047359 264 VLCKE---------HQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGK--------GKWKEVEELLSAVLDKGLL--LD 324 (440)
Q Consensus 264 ~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~--~~ 324 (440)
.+... |++++|...+++..+.. +.+...+..+..+|... |++++|...|++..+..+. .+
T Consensus 179 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 257 (474)
T 4abn_A 179 VLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSN 257 (474)
T ss_dssp HHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGC
T ss_pred HHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccC
Confidence 55554 55555555555555442 22344455555555555 5666666666666654320 25
Q ss_pred hhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHH
Q 047359 325 SFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFD 384 (440)
Q Consensus 325 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 384 (440)
...|..+..+|...|++++|.+.|++..+.... +...+..+...+...|++++|.+.+.
T Consensus 258 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 258 PDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 556666666666667777777776666665333 44556666666666666666665443
No 75
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.52 E-value=7.1e-12 Score=111.01 Aligned_cols=230 Identities=10% Similarity=-0.069 Sum_probs=160.6
Q ss_pred HHHHHHhhcCcHHHHHHHHHHHHhcCCC-C----CHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCC-----CC-ChhhH
Q 047359 190 YVIQKLSDMGKTYAAEMIFKRACDEKIE-L----QDDTCGCMLKALSKEGRVKEAIQIYHLISERGI-----TV-RDSDY 258 (440)
Q Consensus 190 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~-~~~~~ 258 (440)
.....+...|++++|...+++..+.... + ...++..+...|...|+++.|...+++..+... .+ ...++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 3455667778888888888887653211 1 234677777888888888888888887665311 11 23466
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHc----CCC-CChhhHHHHHHHHHcCCCHHHHHHHHHHHHh-----cCCCCchhhh
Q 047359 259 YAFVNVLCKEHQPEEVCGLLRDVVER----GYI-PCAMELSRFVASQCGKGKWKEVEELLSAVLD-----KGLLLDSFCC 328 (440)
Q Consensus 259 ~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 328 (440)
..+...+...|++++|...++...+. +.. ....++..+...|...|++++|...+++..+ ..+. ...++
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~ 264 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVL 264 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHH
Confidence 77788888888998888888887653 111 1234677788888888999999999888876 3332 36677
Q ss_pred HHHHHHHHcCCcHHHHHHHHHHHHhccC----CcCHHhHHHHHHHHHhcCc---HHHHHHHHHHHHHcCCC-chhhHHHH
Q 047359 329 SSLMEYYCSNRQIDKAIALHIKIEKLKG----SLDVATYDVLLDGLFKDGR---MEEAVRIFDYMKELKVV-SSSSFVIV 400 (440)
Q Consensus 329 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~-~~~~~~~l 400 (440)
..+...|.+.|++++|...+++..+... ......+..+...+...|+ ..+|...+++.. ..+ ....+..+
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~--~~~~~~~~~~~l 342 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN--LHAYIEACARSA 342 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT--CHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC--ChhHHHHHHHHH
Confidence 7888889999999999999988876422 1123345566666777777 777777776521 112 44567788
Q ss_pred HHHHHhcccHHHHHHHHHHHHH
Q 047359 401 VSRLCHLKELRKAMKNHDEMLK 422 (440)
Q Consensus 401 ~~~~~~~g~~~~a~~~~~~m~~ 422 (440)
...|...|++++|...|++..+
T Consensus 343 a~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 343 AAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8899999999999999988765
No 76
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.50 E-value=1.6e-13 Score=118.08 Aligned_cols=238 Identities=14% Similarity=0.018 Sum_probs=118.7
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhcC------CCCcccccchHHHHHHHhhcCcHHHHHHHHHHHHhc------C-C
Q 047359 150 TYSSILDGARRYEKTEVSDRIVGLMVEKK------LLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDE------K-I 216 (440)
Q Consensus 150 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~ 216 (440)
++..+...+...|++++|...++++.+.. ..|. ....+..+...+...|++++|...+++.... + .
T Consensus 29 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 29 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPD-VATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 44444444555555555555555444320 0111 1334445555555555555555555554432 1 1
Q ss_pred CCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHc------CC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc-----
Q 047359 217 ELQDDTCGCMLKALSKEGRVKEAIQIYHLISER------GI-TVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVER----- 284 (440)
Q Consensus 217 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----- 284 (440)
.....++..+...+...|++++|...+++..+. +. +.....+..+...+...|++++|..+++.+.+.
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 112344555556666666666666666655443 11 112344555666666666666666666666543
Q ss_pred -C-CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhc-------CCCCchh-------hhHHHHHHHHcCCcHHHHHHHH
Q 047359 285 -G-YIPCAMELSRFVASQCGKGKWKEVEELLSAVLDK-------GLLLDSF-------CCSSLMEYYCSNRQIDKAIALH 348 (440)
Q Consensus 285 -~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~ 348 (440)
+ .+....++..+...+...|++++|...++++.+. ...+... .+..+...+...+.+.++...+
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 267 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWY 267 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHH
Confidence 1 1112335556666666677777777777666542 1111111 1122222333445555666666
Q ss_pred HHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHc
Q 047359 349 IKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKEL 389 (440)
Q Consensus 349 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 389 (440)
....... ..+..++..+..+|.+.|++++|.+.|+++.+.
T Consensus 268 ~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 268 KACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp ------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 6665432 225567888899999999999999999888764
No 77
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.50 E-value=2.8e-11 Score=107.17 Aligned_cols=237 Identities=10% Similarity=-0.017 Sum_probs=110.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHhcCCCCCCc----hhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCC----CcccccchH
Q 047359 118 VIDFYSKKGDFGAAFDRLNEMCNGRNLTPG----FSTYSSILDGARRYEKTEVSDRIVGLMVEKKLL----PKHFLSGND 189 (440)
Q Consensus 118 li~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~~ 189 (440)
....+...|++++|+..|++..+.....++ ..++..+..++...|+++.|...+++..+.... +.....++.
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 344456677777777777776541111122 235556666666677777777666665542110 001133444
Q ss_pred HHHHHHhhcCcHHHHHHHHHHHHhcCC-----CCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 047359 190 YVIQKLSDMGKTYAAEMIFKRACDEKI-----ELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNV 264 (440)
Q Consensus 190 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 264 (440)
.+...|...|++++|.+.+++..+... .....++..+..+|...|++++|...+++..+..
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~-------------- 252 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVS-------------- 252 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--------------
Confidence 555555555555555555555443110 0011233444444444455555554444443310
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCC----CchhhhHHHHHHHHcCCc
Q 047359 265 LCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLL----LDSFCCSSLMEYYCSNRQ 340 (440)
Q Consensus 265 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~ 340 (440)
...+.+....++..+...+.+.|++++|...+++..+.... .....+..+...|...++
T Consensus 253 -----------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~ 315 (378)
T 3q15_A 253 -----------------REKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVD 315 (378)
T ss_dssp -----------------HHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCC
T ss_pred -----------------HhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCc
Confidence 00011112334444455555555555555555554432111 111223334444445555
Q ss_pred ---HHHHHHHHHHHHhccCCc-CHHhHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 047359 341 ---IDKAIALHIKIEKLKGSL-DVATYDVLLDGLFKDGRMEEAVRIFDYMKE 388 (440)
Q Consensus 341 ---~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 388 (440)
..+|+..+++. +..| ....+..+...|...|++++|...|+++.+
T Consensus 316 ~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 316 ERKIHDLLSYFEKK---NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC---CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44454444431 1111 223445566666666666666666666543
No 78
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.50 E-value=8e-13 Score=104.22 Aligned_cols=163 Identities=16% Similarity=0.079 Sum_probs=105.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHH
Q 047359 257 DYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYC 336 (440)
Q Consensus 257 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 336 (440)
.+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+..+. +...+..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD-NVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHH
Confidence 34444555555566666666555554432 234445555566666666666666666666554322 4555666666677
Q ss_pred cCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcccHHHHHHH
Q 047359 337 SNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLKELRKAMKN 416 (440)
Q Consensus 337 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 416 (440)
..|++++|.+.++++.+... .+...+..+...+...|++++|.+.++++.+..+.++.++..++..+...|++++|...
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 77777777777777766533 25566677777777777777777777777777666777777777777777777777777
Q ss_pred HHHHHH
Q 047359 417 HDEMLK 422 (440)
Q Consensus 417 ~~~m~~ 422 (440)
++++.+
T Consensus 167 ~~~~~~ 172 (186)
T 3as5_A 167 FKKANE 172 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777765
No 79
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.48 E-value=2.6e-12 Score=121.73 Aligned_cols=165 Identities=12% Similarity=0.056 Sum_probs=117.9
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHH
Q 047359 255 DSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEY 334 (440)
Q Consensus 255 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 334 (440)
...++.+...+.+.|++++|+..|++.++.. +-+...+..+..+|.+.|++++|+..|++..+..+. +...|..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 4556666666666677777777776666653 234556666777777777777777777777666443 56677777777
Q ss_pred HHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcccHHHHH
Q 047359 335 YCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLKELRKAM 414 (440)
Q Consensus 335 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 414 (440)
|...|++++|++.|++.++.... +...|..+..+|.+.|++++|++.|+++.+..|.++.++..++.++...|++++|.
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHH
Confidence 77777777777777777775443 56677777778888888888888888888777777777888888888888888777
Q ss_pred HHHHHHHH
Q 047359 415 KNHDEMLK 422 (440)
Q Consensus 415 ~~~~~m~~ 422 (440)
+.++++++
T Consensus 166 ~~~~kal~ 173 (723)
T 4gyw_A 166 ERMKKLVS 173 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77777654
No 80
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.48 E-value=3.7e-11 Score=106.25 Aligned_cols=301 Identities=10% Similarity=-0.091 Sum_probs=196.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCchh----hHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCcc---cccc
Q 047359 115 YNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFS----TYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKH---FLSG 187 (440)
Q Consensus 115 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~ 187 (440)
.......+...|++++|...+++... ..-..+.. .+..+...+...|++++|...+++.......... ...+
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 95 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALE-ELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 95 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH-TCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH-cCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 34455567778999999999998776 22111221 4556667788889999999999888775321110 0122
Q ss_pred hHHHHHHHhhcCcHHHHHHHHHHHHhcC----CC--C-CHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCC----Chh
Q 047359 188 NDYVIQKLSDMGKTYAAEMIFKRACDEK----IE--L-QDDTCGCMLKALSKEGRVKEAIQIYHLISERGITV----RDS 256 (440)
Q Consensus 188 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~ 256 (440)
+..+...+...|++++|...+++..... .. | ....+..+...+...|++++|...+++..+..... ...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 4567778888899999999888876532 11 2 23455667778888899999999998877653221 224
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hhHH-----HHHHHHHcCCCHHHHHHHHHHHHhcCCCCc---hhh
Q 047359 257 DYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCA-MELS-----RFVASQCGKGKWKEVEELLSAVLDKGLLLD---SFC 327 (440)
Q Consensus 257 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~ 327 (440)
++..+...+...|++++|...++........++. ..+. ..+..+...|++++|...+++.......+. ...
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 5667777888889999999998887654212211 1121 223346678999999888888765432211 223
Q ss_pred hHHHHHHHHcCCcHHHHHHHHHHHHhcc----CCcCH-HhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHH
Q 047359 328 CSSLMEYYCSNRQIDKAIALHIKIEKLK----GSLDV-ATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVS 402 (440)
Q Consensus 328 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 402 (440)
+..+...+...|++++|...+++..... ..++. ..+..+..++...|+.++|...+++........ ....
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~~-----g~~~ 330 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRT-----GFIS 330 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH-----CCCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccc-----cHHH
Confidence 5566778888899999998888876532 11122 255666777888899999998888887753221 1233
Q ss_pred HHHhcccHHHHHHHHHHHHHC
Q 047359 403 RLCHLKELRKAMKNHDEMLKM 423 (440)
Q Consensus 403 ~~~~~g~~~~a~~~~~~m~~~ 423 (440)
.+...| +....+++.+...
T Consensus 331 ~~~~~g--~~~~~ll~~~~~~ 349 (373)
T 1hz4_A 331 HFVIEG--EAMAQQLRQLIQL 349 (373)
T ss_dssp HHHTTH--HHHHHHHHHHHHT
T ss_pred HHHHcc--HHHHHHHHHHHhC
Confidence 445555 5677777777774
No 81
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.46 E-value=1.1e-10 Score=103.14 Aligned_cols=299 Identities=12% Similarity=0.046 Sum_probs=193.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHhccc---CCc------hhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCchh----hH
Q 047359 85 WSLVAQILCRSGKFEVVLGLLDSGI---YSS------VMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFS----TY 151 (440)
Q Consensus 85 ~~~l~~~~~~~~~~~~a~~~~~~~~---~~~------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~----~~ 151 (440)
.......+...|++++|...+++.. |+. .+++.+...+...|++++|.+.+++......-.++.. ++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3444556677889999988887754 221 1456667778888999999998888765111112221 24
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhcCC---C---CcccccchHHHHHHHhhcCcHHHHHHHHHHHHhcCCCC----CHH
Q 047359 152 SSILDGARRYEKTEVSDRIVGLMVEKKL---L---PKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIEL----QDD 221 (440)
Q Consensus 152 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~ 221 (440)
..+...+...|++++|...+++..+... . |. ....+..+...+...|++++|...+++........ ...
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPM-HEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcH-HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 5566778888999999999988887421 1 21 13455667788888899999999998877643321 234
Q ss_pred hHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCCh-hhHH-----HHHHHHHhcCChHHHHHHHHHHHHcCCCCC---hhh
Q 047359 222 TCGCMLKALSKEGRVKEAIQIYHLISERGITVRD-SDYY-----AFVNVLCKEHQPEEVCGLLRDVVERGYIPC---AME 292 (440)
Q Consensus 222 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~ 292 (440)
++..+...+...|++++|...+++.......++. ..+. ..+..+...|++++|...++........+. ...
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 5677778888889999999999887654222111 1121 233446788999999998888765432111 224
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhc----CCCCch-hhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHH
Q 047359 293 LSRFVASQCGKGKWKEVEELLSAVLDK----GLLLDS-FCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLL 367 (440)
Q Consensus 293 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 367 (440)
+..+...+...|++++|...++..... +..++. ..+..+..++...|+.++|...+++....... ...+
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~------~g~~ 329 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR------TGFI 329 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH------HCCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc------ccHH
Confidence 566777788889999999988887643 211122 25556677788889999999988888764211 1122
Q ss_pred HHHHhcCcHHHHHHHHHHHHHcCCC
Q 047359 368 DGLFKDGRMEEAVRIFDYMKELKVV 392 (440)
Q Consensus 368 ~~~~~~g~~~~a~~~~~~~~~~~~~ 392 (440)
..+...| +....+++.+....+.
T Consensus 330 ~~~~~~g--~~~~~ll~~~~~~~~~ 352 (373)
T 1hz4_A 330 SHFVIEG--EAMAQQLRQLIQLNTL 352 (373)
T ss_dssp HHHHTTH--HHHHHHHHHHHHTTCS
T ss_pred HHHHHcc--HHHHHHHHHHHhCCCC
Confidence 3333444 5566666666665543
No 82
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.45 E-value=3e-11 Score=98.76 Aligned_cols=206 Identities=12% Similarity=-0.023 Sum_probs=162.4
Q ss_pred ccchHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 047359 185 LSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNV 264 (440)
Q Consensus 185 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 264 (440)
+..+......+...|++++|...|++..+..+.++...+..+..++...|++++|+..+++..+..+. +...+..+...
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 85 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKSAA 85 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHHHH
Confidence 56788889999999999999999999999877567788888999999999999999999999987654 66788999999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCh-------hhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCc---hhhhHHHHHH
Q 047359 265 LCKEHQPEEVCGLLRDVVERGYIPCA-------MELSRFVASQCGKGKWKEVEELLSAVLDKGLLLD---SFCCSSLMEY 334 (440)
Q Consensus 265 ~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~ 334 (440)
+...|++++|...++...+.. +.+. ..|..+...+...|++++|...+++..+. .|+ ...+..+..+
T Consensus 86 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHHH
Confidence 999999999999999999864 2233 45777888888999999999999999886 344 4566677777
Q ss_pred HHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHH
Q 047359 335 YCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVS 402 (440)
Q Consensus 335 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 402 (440)
|...| ...++++...+.. +...|.... ....+.+++|...+++..+..|.++.+...+..
T Consensus 163 ~~~~~-----~~~~~~a~~~~~~-~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~ 222 (228)
T 4i17_A 163 FYNNG-----ADVLRKATPLASS-NKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQ 222 (228)
T ss_dssp HHHHH-----HHHHHHHGGGTTT-CHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHH-----HHHHHHHHhcccC-CHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence 75443 4445555554322 344444433 345677999999999999998887776655544
No 83
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.43 E-value=1.4e-11 Score=96.98 Aligned_cols=166 Identities=14% Similarity=0.022 Sum_probs=93.7
Q ss_pred HHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHc
Q 047359 223 CGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCG 302 (440)
Q Consensus 223 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 302 (440)
+..+...+...|++++|...++++.+... .+...+..+...+...|++++|...++.+.+.. +.+...+..+...+..
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 34444445555555555555555444322 134445555555555555555555555555442 2234455555555556
Q ss_pred CCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHH
Q 047359 303 KGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRI 382 (440)
Q Consensus 303 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 382 (440)
.|++++|.+.++++....+. +...+..+...+...|++++|.+.++++.+.... +...+..+...+...|++++|.+.
T Consensus 89 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEANPI-NFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN-EGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCcH-hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCHHHHHHH
Confidence 66666666666666554322 4555666666666667777777776666655322 455666666777777777777777
Q ss_pred HHHHHHcCCC
Q 047359 383 FDYMKELKVV 392 (440)
Q Consensus 383 ~~~~~~~~~~ 392 (440)
++++.+..+.
T Consensus 167 ~~~~~~~~~~ 176 (186)
T 3as5_A 167 FKKANELDEG 176 (186)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHcCCC
Confidence 7766655444
No 84
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.40 E-value=1.7e-11 Score=116.10 Aligned_cols=164 Identities=12% Similarity=0.034 Sum_probs=81.7
Q ss_pred ccchHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 047359 185 LSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNV 264 (440)
Q Consensus 185 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 264 (440)
..+++.+...+.+.|++++|++.|++..+..+. +...|..+..+|.+.|++++|+..|++..+.... +...|..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 334444444444445555555444444444332 3444455555555555555555555555444322 34445555555
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHH
Q 047359 265 LCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKA 344 (440)
Q Consensus 265 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 344 (440)
+...|++++|.+.+++..+.+ +-+...+..+...+...|++++|++.|++..+..+. +...+..+..++...|++++|
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHHH
Confidence 555555555555555554432 223344555555555555555555555555554332 344555555555555555555
Q ss_pred HHHHHHHH
Q 047359 345 IALHIKIE 352 (440)
Q Consensus 345 ~~~~~~~~ 352 (440)
.+.++++.
T Consensus 165 ~~~~~kal 172 (723)
T 4gyw_A 165 DERMKKLV 172 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555544
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.39 E-value=1.3e-11 Score=104.42 Aligned_cols=227 Identities=13% Similarity=-0.004 Sum_probs=157.6
Q ss_pred hhcCcHHHHHHHHHHHHh-------cCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHc------CC-CCChhhHHHH
Q 047359 196 SDMGKTYAAEMIFKRACD-------EKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISER------GI-TVRDSDYYAF 261 (440)
Q Consensus 196 ~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l 261 (440)
...|++++|...+++..+ ........++..+...|...|++++|...+++..+. +- +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 345666666666666544 222334667888999999999999999999998765 21 2235678889
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc------C-CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhc------CCCC-chhh
Q 047359 262 VNVLCKEHQPEEVCGLLRDVVER------G-YIPCAMELSRFVASQCGKGKWKEVEELLSAVLDK------GLLL-DSFC 327 (440)
Q Consensus 262 ~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~ 327 (440)
...+...|++++|...++.+.+. . .+....++..+...+...|++++|...+++..+. +-.| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998764 1 1234567888899999999999999999998765 1122 3567
Q ss_pred hHHHHHHHHcCCcHHHHHHHHHHHHhcc-------CCcCH-HhHHHHHHHHHhcCc------HHHHHHHHHHHHHcCCCc
Q 047359 328 CSSLMEYYCSNRQIDKAIALHIKIEKLK-------GSLDV-ATYDVLLDGLFKDGR------MEEAVRIFDYMKELKVVS 393 (440)
Q Consensus 328 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~p~~-~~~~~l~~~~~~~g~------~~~a~~~~~~~~~~~~~~ 393 (440)
+..+...|...|++++|.+.++++.+.. ..+.. ..|..+...+...+. +..+...++......+..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 8888899999999999999999988641 12222 233333333333222 333333333332222225
Q ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHH
Q 047359 394 SSSFVIVVSRLCHLKELRKAMKNHDEMLK 422 (440)
Q Consensus 394 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 422 (440)
..++..+...|...|++++|...+++.++
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 67889999999999999999999999876
No 86
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.36 E-value=1.1e-10 Score=99.23 Aligned_cols=213 Identities=8% Similarity=-0.060 Sum_probs=138.0
Q ss_pred cHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHc----CCCCC-hhhHHHHHHHHHhcCChHHH
Q 047359 200 KTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISER----GITVR-DSDYYAFVNVLCKEHQPEEV 274 (440)
Q Consensus 200 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a 274 (440)
++++|...|.+. ...|...|++++|...|.+..+. |..++ ..+|..+..+|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 467777766665 33456677788887777766543 21111 35677777778888888888
Q ss_pred HHHHHHHHHcCCC---C--ChhhHHHHHHHHHcC-CCHHHHHHHHHHHHhcCCCC-c----hhhhHHHHHHHHcCCcHHH
Q 047359 275 CGLLRDVVERGYI---P--CAMELSRFVASQCGK-GKWKEVEELLSAVLDKGLLL-D----SFCCSSLMEYYCSNRQIDK 343 (440)
Q Consensus 275 ~~~~~~~~~~~~~---~--~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~ 343 (440)
...++...+.... + -..++..+...|... |++++|+..+++..+..... + ..++..+...+...|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 8887777643110 1 134677777788885 88888888888876542111 1 3457777888888888899
Q ss_pred HHHHHHHHHhccCCcCH------HhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchh-----hHHHHHHHHH--hcccH
Q 047359 344 AIALHIKIEKLKGSLDV------ATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSS-----SFVIVVSRLC--HLKEL 410 (440)
Q Consensus 344 a~~~~~~~~~~~~~p~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~l~~~~~--~~g~~ 410 (440)
|+..|++..+....... ..|..+..++...|++++|...|++..+..|.... .+..++.++. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 98888888875443221 14667777888888999999888888776665221 3444555554 45678
Q ss_pred HHHHHHHHHHHHCCCCCCH
Q 047359 411 RKAMKNHDEMLKMGHKPDE 429 (440)
Q Consensus 411 ~~a~~~~~~m~~~~~~p~~ 429 (440)
++|+..|+++.. +.|+.
T Consensus 257 ~~A~~~~~~~~~--l~~~~ 273 (292)
T 1qqe_A 257 SEHCKEFDNFMR--LDKWK 273 (292)
T ss_dssp HHHHHHHTTSSC--CCHHH
T ss_pred HHHHHHhccCCc--cHHHH
Confidence 888887776654 34443
No 87
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.35 E-value=3.6e-10 Score=94.12 Aligned_cols=249 Identities=8% Similarity=-0.050 Sum_probs=134.2
Q ss_pred HHHHhcCChhHHHHHHHHHhcCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCcccccchHHHHHHHhhcC
Q 047359 120 DFYSKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMG 199 (440)
Q Consensus 120 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 199 (440)
+-..-.|.+..++.-...+. ...++ ..-.-+.+++...|+++.. ....|. ...+..+...+ ..+
T Consensus 21 kn~fy~G~yq~~i~e~~~~~---~~~~~-~~~~~~~Rs~iAlg~~~~~---------~~~~~~--~~a~~~la~~~-~~~ 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKFS---KVTDN-TLLFYKAKTLLALGQYQSQ---------DPTSKL--GKVLDLYVQFL-DTK 84 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTSS---CCCCH-HHHHHHHHHHHHTTCCCCC---------CSSSTT--HHHHHHHHHHH-TTT
T ss_pred HHHHHhhHHHHHHHHHHhcC---ccchH-HHHHHHHHHHHHcCCCccC---------CCCCHH--HHHHHHHHHHh-ccc
Confidence 33445677777766333221 12222 2333345667777766531 111121 22333233222 222
Q ss_pred cHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCC-CCChhhHHHHHHHHHhcCChHHHHHHH
Q 047359 200 KTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGI-TVRDSDYYAFVNVLCKEHQPEEVCGLL 278 (440)
Q Consensus 200 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~ 278 (440)
|...+++....+ .++..++..+..++...|++++|++++.+....+. .-+...+...+..+.+.|+++.|.+.+
T Consensus 85 ----a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l 159 (310)
T 3mv2_B 85 ----NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIF 159 (310)
T ss_dssp ----CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ----HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 566666665544 23444555666777777777777777777665543 124556666777777777777777777
Q ss_pred HHHHHcCCCC-----ChhhHHHHHHHHHc----CCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHH
Q 047359 279 RDVVERGYIP-----CAMELSRFVASQCG----KGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHI 349 (440)
Q Consensus 279 ~~~~~~~~~~-----~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 349 (440)
+.|.+. .| +..+...++.++.. .+++.+|..+|+++.+.. |+..+...++.++...|++++|.+.++
T Consensus 160 ~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~~eAe~~L~ 235 (310)
T 3mv2_B 160 DNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNIAEAQGIVE 235 (310)
T ss_dssp HHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCHHHHHHHHH
Confidence 777664 34 24444445444222 236777777777765542 332222333446667777777777777
Q ss_pred HHHhccC---------CcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchh
Q 047359 350 KIEKLKG---------SLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSS 395 (440)
Q Consensus 350 ~~~~~~~---------~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 395 (440)
.+.+..+ .-++.+...++......|+ +|.++++++.+..|.++.
T Consensus 236 ~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~ 288 (310)
T 3mv2_B 236 LLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAF 288 (310)
T ss_dssp HHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHH
T ss_pred HHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChH
Confidence 6554310 1144455455544445565 667777777777666443
No 88
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.34 E-value=3.1e-11 Score=102.05 Aligned_cols=230 Identities=14% Similarity=0.023 Sum_probs=161.4
Q ss_pred HhcCChhhHHHHHHHHHhc-----CCCCcccccchHHHHHHHhhcCcHHHHHHHHHHHHhc------CC-CCCHHhHHHH
Q 047359 159 RRYEKTEVSDRIVGLMVEK-----KLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDE------KI-ELQDDTCGCM 226 (440)
Q Consensus 159 ~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l 226 (440)
...|+++.|...+++.++. +..+.....++..+...+...|++++|...+++..+. +. .....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4578888888888887763 1121122677889999999999999999999998764 21 2235678889
Q ss_pred HHHHhhhccHHHHHHHHHHHHHc------C-CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc------C-CCCChhh
Q 047359 227 LKALSKEGRVKEAIQIYHLISER------G-ITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVER------G-YIPCAME 292 (440)
Q Consensus 227 ~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~ 292 (440)
...|...|++++|...+++..+. . .+....++..+...+...|++++|...++.+.+. + .+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998765 1 1224567888999999999999999999998765 1 1223567
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhc-------CCCCch-hhhHHHHHHHHcCCcHH------HHHHHHHHHHhccCCc
Q 047359 293 LSRFVASQCGKGKWKEVEELLSAVLDK-------GLLLDS-FCCSSLMEYYCSNRQID------KAIALHIKIEKLKGSL 358 (440)
Q Consensus 293 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~-~~~~~l~~~~~~~~~~~------~a~~~~~~~~~~~~~p 358 (440)
+..+...+...|++++|...+++..+. ...+.. ..+..+...+...+... .+...++.... ....
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHH
Confidence 888999999999999999999998764 112222 23333333333333322 22222222111 1122
Q ss_pred CHHhHHHHHHHHHhcCcHHHHHHHHHHHHHc
Q 047359 359 DVATYDVLLDGLFKDGRMEEAVRIFDYMKEL 389 (440)
Q Consensus 359 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 389 (440)
...++..+...|...|++++|...++++.+.
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3457888999999999999999999988753
No 89
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.34 E-value=3.1e-09 Score=96.66 Aligned_cols=205 Identities=9% Similarity=-0.063 Sum_probs=134.1
Q ss_pred HHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 047359 201 TYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRD 280 (440)
Q Consensus 201 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 280 (440)
.+.+..+|+++....+. ++..|...+..+.+.|+.+.|..++++.... +.+...+. .|......++. ++.
T Consensus 195 ~~Rv~~~ye~al~~~p~-~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~---~~~ 264 (493)
T 2uy1_A 195 ESRMHFIHNYILDSFYY-AEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAV---YGD 264 (493)
T ss_dssp HHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHH---HHH
T ss_pred HHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHH---HHH
Confidence 34567788888776543 5778888888888889999999999998887 22322222 12221111221 222
Q ss_pred HHHcC------------CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHc-CCcHHHHHHH
Q 047359 281 VVERG------------YIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCS-NRQIDKAIAL 347 (440)
Q Consensus 281 ~~~~~------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~ 347 (440)
+.+.- .......|...+....+.++.+.|..+|+.. .. ...+...|......-.. .++.+.|..+
T Consensus 265 l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~i 342 (493)
T 2uy1_A 265 LKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNI 342 (493)
T ss_dssp HHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHH
T ss_pred HHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHH
Confidence 22110 0111245666666666778899999999998 32 22233344322222222 3369999999
Q ss_pred HHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Q 047359 348 HIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLKELRKAMKNHDEMLK 422 (440)
Q Consensus 348 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 422 (440)
|+...+.-.. ++..+...++...+.|+.+.|..+|+.+. .....|...+..-...|+.+.+..+++++..
T Consensus 343 fe~al~~~~~-~~~~~~~yid~e~~~~~~~~aR~l~er~~----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 343 FSSGLLKHPD-STLLKEEFFLFLLRIGDEENARALFKRLE----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHSC----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999876432 34556667787788999999999999872 3677888888877888999999998888764
No 90
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.32 E-value=3e-09 Score=88.62 Aligned_cols=60 Identities=10% Similarity=0.004 Sum_probs=28.4
Q ss_pred HHHHHHHhhcCcHHHHHHHHHHHHhcCC-CCCHHhHHHHHHHHhhhccHHHHHHHHHHHHH
Q 047359 189 DYVIQKLSDMGKTYAAEMIFKRACDEKI-ELQDDTCGCMLKALSKEGRVKEAIQIYHLISE 248 (440)
Q Consensus 189 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 248 (440)
..+..++...|++++|++++.+....+. .-+...+..++..+.+.|+.+.|.+.++.|.+
T Consensus 104 ~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 104 YLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3444455555555555555554444332 11333444444555555555555555555544
No 91
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.31 E-value=1.5e-10 Score=85.72 Aligned_cols=128 Identities=16% Similarity=0.195 Sum_probs=94.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHh
Q 047359 293 LSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFK 372 (440)
Q Consensus 293 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 372 (440)
+..+...+...|++++|..+++++.+.... +...+..+...+...|++++|...++++.+.+.. +...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHH
Confidence 455566666677777777777777665433 4556666777777777888888888777765432 55667777778888
Q ss_pred cCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Q 047359 373 DGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLKELRKAMKNHDEMLK 422 (440)
Q Consensus 373 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 422 (440)
.|++++|.+.++++.+..+.+...+..++..+.+.|++++|...++++.+
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 88888888888888877766777778888888888888888888888776
No 92
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.29 E-value=4.2e-10 Score=94.01 Aligned_cols=207 Identities=11% Similarity=-0.017 Sum_probs=126.4
Q ss_pred ccchHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCC--HHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCC-C-ChhhHHH
Q 047359 185 LSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQ--DDTCGCMLKALSKEGRVKEAIQIYHLISERGIT-V-RDSDYYA 260 (440)
Q Consensus 185 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~ 260 (440)
...+..+...+.+.|++++|...|+++.+..+... ...+..+..+|.+.|++++|...|+...+..+. | ....+..
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 94 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE 94 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence 55566677777788888888888888777654311 456667777777788888888888877775431 1 1344555
Q ss_pred HHHHHHh--------cCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHH
Q 047359 261 FVNVLCK--------EHQPEEVCGLLRDVVERGYIPCA-MELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSL 331 (440)
Q Consensus 261 l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 331 (440)
+..++.. .|++++|...|+.+.+.. |+. .....+ ..+...... ....+..+
T Consensus 95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~--------------~~~~~~~~~----~~~~~~~l 154 (261)
T 3qky_A 95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDAT--------------QKIRELRAK----LARKQYEA 154 (261)
T ss_dssp HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHH--------------HHHHHHHHH----HHHHHHHH
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHH--------------HHHHHHHHH----HHHHHHHH
Confidence 6666666 777777777777776653 322 111111 111111100 01123556
Q ss_pred HHHHHcCCcHHHHHHHHHHHHhccCCc--CHHhHHHHHHHHHhc----------CcHHHHHHHHHHHHHcCCCchh---h
Q 047359 332 MEYYCSNRQIDKAIALHIKIEKLKGSL--DVATYDVLLDGLFKD----------GRMEEAVRIFDYMKELKVVSSS---S 396 (440)
Q Consensus 332 ~~~~~~~~~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~---~ 396 (440)
...|...|++++|+..|+++.+..+.. ....+..+..+|... |++++|...|+++.+..|.++. +
T Consensus 155 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a 234 (261)
T 3qky_A 155 ARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTA 234 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHH
Confidence 677888888888888888888754321 234666777777755 7888888888888887776543 3
Q ss_pred HHHHHHHHHhcccHH
Q 047359 397 FVIVVSRLCHLKELR 411 (440)
Q Consensus 397 ~~~l~~~~~~~g~~~ 411 (440)
...+...+.+.|+++
T Consensus 235 ~~~l~~~~~~~~~~~ 249 (261)
T 3qky_A 235 EELYTRARQRLTELE 249 (261)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh
Confidence 333444444444433
No 93
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.27 E-value=5.9e-10 Score=89.43 Aligned_cols=135 Identities=11% Similarity=0.066 Sum_probs=90.3
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcC
Q 047359 295 RFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDG 374 (440)
Q Consensus 295 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 374 (440)
.+...+...|++++|...+++..+..+. +...+..+..++...|++++|...|++..+..+. +...|..+...|...|
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHh
Confidence 3667777788888888888888776544 6677777888888888888888888888876544 5667777777766554
Q ss_pred c--HHHHHHHHHHHHHcCCC-chhhHHHHHHHHHhcccHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 047359 375 R--MEEAVRIFDYMKELKVV-SSSSFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDEATYKQV 435 (440)
Q Consensus 375 ~--~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~l 435 (440)
+ .+.+...++.... +. ....+.....++...|++++|+..|++.++ +.|+......+
T Consensus 137 ~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l 196 (208)
T 3urz_A 137 EQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTL 196 (208)
T ss_dssp HHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHH
Confidence 3 3444555555432 22 223445556666777888888888888877 56776555443
No 94
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.27 E-value=7.3e-09 Score=87.20 Aligned_cols=218 Identities=11% Similarity=0.007 Sum_probs=103.0
Q ss_pred hhHHHHHHHHHhcCCCCcccccchHHHHHHHhhcC--cHHHHHHHHHHHHhcCCCCCHHhHHHHHHHH----hhh---cc
Q 047359 165 EVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMG--KTYAAEMIFKRACDEKIELQDDTCGCMLKAL----SKE---GR 235 (440)
Q Consensus 165 ~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~ 235 (440)
++|+...+.++..+ |+. ..+|+.-...+...| +++++++.++.+...+++ +..+|+.-...+ ... ++
T Consensus 50 ~~aL~~t~~~L~~n--P~~-~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 50 ERALHITELGINEL--ASH-YTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp HHHHHHHHHHHHHC--TTC-HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHHHHHHHHHC--cHH-HHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCC
Confidence 45666666665543 432 444555555555555 555555555555554443 334444333333 222 44
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHH
Q 047359 236 VKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSA 315 (440)
Q Consensus 236 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 315 (440)
+++++.+++.+.+...+ +..+|+.-...+.+.|.++ .+++++.+++
T Consensus 126 ~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~---------------------------------~~~EL~~~~~ 171 (306)
T 3dra_A 126 PYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHN---------------------------------DAKELSFVDK 171 (306)
T ss_dssp THHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTT---------------------------------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccC---------------------------------hHHHHHHHHH
Confidence 45555555555544332 3444444444444444444 0044444444
Q ss_pred HHhcCCCCchhhhHHHHHHHHcCCc------HHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHH-HHHHHHHHHH
Q 047359 316 VLDKGLLLDSFCCSSLMEYYCSNRQ------IDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEE-AVRIFDYMKE 388 (440)
Q Consensus 316 ~~~~~~~~~~~~~~~l~~~~~~~~~------~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~ 388 (440)
+.+..+. |...|+.-.......+. ++++++.+++++...+. |...|+.+...+.+.|+... +..+..++.+
T Consensus 172 ~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~ 249 (306)
T 3dra_A 172 VIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVD 249 (306)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEE
T ss_pred HHHhCCC-CHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHh
Confidence 4444333 44444444333434333 45555555555554433 45555555555555444222 3334444333
Q ss_pred cC---CCchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Q 047359 389 LK---VVSSSSFVIVVSRLCHLKELRKAMKNHDEMLK 422 (440)
Q Consensus 389 ~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 422 (440)
.+ +.++.++..++.++.+.|+.++|.++++.+.+
T Consensus 250 ~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 250 LEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp GGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 32 33555555555555555555555555555543
No 95
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.27 E-value=7.2e-10 Score=92.55 Aligned_cols=191 Identities=8% Similarity=0.005 Sum_probs=124.2
Q ss_pred CHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CCChhhHH
Q 047359 219 QDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVR--DSDYYAFVNVLCKEHQPEEVCGLLRDVVERGY--IPCAMELS 294 (440)
Q Consensus 219 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~ 294 (440)
+...+......+.+.|++++|...|+.+.+..+... ...+..+..++.+.|++++|...|+.+.+... +.....+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 445566666777777777777777777776543211 45566667777777777777777777776531 11123455
Q ss_pred HHHHHHHc--------CCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHH
Q 047359 295 RFVASQCG--------KGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVL 366 (440)
Q Consensus 295 ~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 366 (440)
.+..++.. .|++++|...|+++.+..+. +......+. .+..+... ....+..+
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~--------------~~~~~~~~----~~~~~~~l 154 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQ--------------KIRELRAK----LARKQYEA 154 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHH--------------HHHHHHHH----HHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHH--------------HHHHHHHH----HHHHHHHH
Confidence 55566666 67777777777777665322 111111111 11111110 11124677
Q ss_pred HHHHHhcCcHHHHHHHHHHHHHcCCC---chhhHHHHHHHHHhc----------ccHHHHHHHHHHHHHCCCCCCHH
Q 047359 367 LDGLFKDGRMEEAVRIFDYMKELKVV---SSSSFVIVVSRLCHL----------KELRKAMKNHDEMLKMGHKPDEA 430 (440)
Q Consensus 367 ~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~~~~p~~~ 430 (440)
...|.+.|++++|+..|+++.+..|. .+..+..+..+|... |++++|...++++.+ ..|+..
T Consensus 155 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~--~~p~~~ 229 (261)
T 3qky_A 155 ARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ--IFPDSP 229 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH--HCTTCT
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH--HCCCCh
Confidence 88899999999999999999998777 446888888888866 999999999999988 356653
No 96
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.25 E-value=1.6e-08 Score=85.09 Aligned_cols=242 Identities=8% Similarity=-0.015 Sum_probs=169.8
Q ss_pred HhcC-ChhHHHHHHHHHhcCCCCCCchh-hHHHHHHHHHhcC--ChhhHHHHHHHHHhcCCCCcccccchHHHHHHH---
Q 047359 123 SKKG-DFGAAFDRLNEMCNGRNLTPGFS-TYSSILDGARRYE--KTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKL--- 195 (440)
Q Consensus 123 ~~~~-~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~--- 195 (440)
.+.| ..++|+++++.+.. +.|+.. .|+.--.++...+ +++++++.++.++... |.+ ..+|+.-...+
T Consensus 43 ~~~~e~s~~aL~~t~~~L~---~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n--Pk~-y~aW~~R~~iL~~~ 116 (306)
T 3dra_A 43 MKAEEYSERALHITELGIN---ELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN--EKN-YQIWNYRQLIIGQI 116 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC--TTC-CHHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHH---HCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC--ccc-HHHHHHHHHHHHHH
Confidence 3444 44799999999987 777655 5677677777888 9999999999999876 543 56666655555
Q ss_pred -hhc---CcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHH--HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 047359 196 -SDM---GKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVK--EAIQIYHLISERGITVRDSDYYAFVNVLCKEH 269 (440)
Q Consensus 196 -~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 269 (440)
... +++++++.+++.+.+..++ +..+|+.-.-.+.+.|+++ ++++.++.+.+.++. +...|+.-...+...+
T Consensus 117 ~~~l~~~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~ 194 (306)
T 3dra_A 117 MELNNNDFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKK 194 (306)
T ss_dssp HHHTTTCCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSG
T ss_pred HHhccccCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcc
Confidence 555 7899999999999998776 8888888888888888888 999999999988765 6666665555554443
Q ss_pred ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHH-HHHHHH
Q 047359 270 QPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQID-KAIALH 348 (440)
Q Consensus 270 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~ 348 (440)
.. . ....++++++.++++....+. |...|+.+-..+.+.|+.. .+..+.
T Consensus 195 ~~----------------~-------------~~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~ 244 (306)
T 3dra_A 195 HL----------------A-------------TDNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFS 244 (306)
T ss_dssp GG----------------C-------------CHHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHH
T ss_pred cc----------------c-------------hhhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHH
Confidence 30 0 001245666666666666554 6666766666666666533 344555
Q ss_pred HHHHhcc--CCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHH-cCCCchhhHHHHHH
Q 047359 349 IKIEKLK--GSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKE-LKVVSSSSFVIVVS 402 (440)
Q Consensus 349 ~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~l~~ 402 (440)
.++.+.+ -..+...+..+...|.+.|+.++|.++++.+.+ .+|.....|...+.
T Consensus 245 ~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 245 LQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHHh
Confidence 5555433 123667777888888888888888888888876 56666666655443
No 97
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.25 E-value=2.1e-10 Score=109.29 Aligned_cols=174 Identities=11% Similarity=-0.076 Sum_probs=143.3
Q ss_pred hhhccHHHHHHHHHHHH--------HcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHc
Q 047359 231 SKEGRVKEAIQIYHLIS--------ERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCG 302 (440)
Q Consensus 231 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 302 (440)
...|++++|++.+++.. +... .+...+..+..++...|++++|...++.+.+.+ +.+...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFS-ESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccc-cchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 67899999999999988 4332 356678888889999999999999999988763 3466788888888999
Q ss_pred CCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHH
Q 047359 303 KGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRI 382 (440)
Q Consensus 303 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 382 (440)
.|++++|.+.|++..+..+. +...+..+..+|...|++++ ++.|++..+.+.. +...|..+..++.+.|++++|++.
T Consensus 480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999887654 67788888889999999999 9999999887554 677888999999999999999999
Q ss_pred HHHHHHcCCCchhhHHHHHHHHHhccc
Q 047359 383 FDYMKELKVVSSSSFVIVVSRLCHLKE 409 (440)
Q Consensus 383 ~~~~~~~~~~~~~~~~~l~~~~~~~g~ 409 (440)
|+++.+.++.+..++..+..++...|+
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCC
Confidence 999999888888888888888876554
No 98
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.23 E-value=5.9e-11 Score=89.67 Aligned_cols=138 Identities=10% Similarity=0.010 Sum_probs=65.6
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHH
Q 047359 268 EHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIAL 347 (440)
Q Consensus 268 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 347 (440)
.|++++|+..++...... +.+...+..+...|.+.|++++|++.|++..+..+. +...|..+..+|...|++++|+..
T Consensus 10 ~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~ 87 (150)
T 4ga2_A 10 KADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTDKAVEC 87 (150)
T ss_dssp HHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchHHHHHH
Confidence 344444444444443321 112223334444555555555555555555544332 444555555555555555555555
Q ss_pred HHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHH-HHHHHHcCCCchhhHHHHHHHHHhcc
Q 047359 348 HIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRI-FDYMKELKVVSSSSFVIVVSRLCHLK 408 (440)
Q Consensus 348 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g 408 (440)
|++..+..+. +...|..+...|.+.|+.++|.+. ++++.+..|.++.+|......+.+.|
T Consensus 88 ~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 88 YRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 5555554322 344555555555555555443332 35555555555555554444444444
No 99
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.22 E-value=4.6e-10 Score=95.32 Aligned_cols=200 Identities=12% Similarity=0.006 Sum_probs=139.9
Q ss_pred HHHHhhcCcHHHHHHHHHHHHhc----CCCC-CHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCC---C--ChhhHHHH
Q 047359 192 IQKLSDMGKTYAAEMIFKRACDE----KIEL-QDDTCGCMLKALSKEGRVKEAIQIYHLISERGIT---V--RDSDYYAF 261 (440)
Q Consensus 192 ~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~--~~~~~~~l 261 (440)
...|...|++++|...|.+..+. +..+ ...+|+.+..+|.+.|++++|+..+++..+.... + -..++..+
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 123 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44566778888888888776553 1111 1457888888888889999998888877654211 1 13467788
Q ss_pred HHHHHhc-CChHHHHHHHHHHHHcCCCC-C----hhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchh------hhH
Q 047359 262 VNVLCKE-HQPEEVCGLLRDVVERGYIP-C----AMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSF------CCS 329 (440)
Q Consensus 262 ~~~~~~~-~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~ 329 (440)
...|... |++++|...+++..+..... + ..++..+...+...|++++|...+++..+..+..... .+.
T Consensus 124 g~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 203 (292)
T 1qqe_A 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (292)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 8888886 99999999999887642111 1 3467888889999999999999999998865443221 456
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHhccCC-cC---HHhHHHHHHHHH--hcCcHHHHHHHHHHHHHcCC
Q 047359 330 SLMEYYCSNRQIDKAIALHIKIEKLKGS-LD---VATYDVLLDGLF--KDGRMEEAVRIFDYMKELKV 391 (440)
Q Consensus 330 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~-p~---~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~~ 391 (440)
.+..++...|++++|...+++..+..+. ++ ...+..++.++. ..+++++|+..|+.+...+|
T Consensus 204 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~ 271 (292)
T 1qqe_A 204 KKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK 271 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHH
Confidence 7777888999999999999998864221 11 113445566664 45778889888877766543
No 100
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.21 E-value=1e-08 Score=93.34 Aligned_cols=340 Identities=10% Similarity=-0.006 Sum_probs=199.5
Q ss_pred ccC-CcchHHHHHHHHHhcCCccChHhHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC-hHHH
Q 047359 24 HKG-LFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSGK-FEVV 101 (440)
Q Consensus 24 ~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a 101 (440)
+.| +++.|..+|+.+... -|. |+++.+..+|++.+.. .|+...|...+....+.++ .+..
T Consensus 6 ~~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp ------CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred HcCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 456 488888888888764 244 8899999999999874 5788899888887777663 3445
Q ss_pred HHHHhccc-------CCchhHHHHHHHHH----hcCChhHHHHHHHHHhcCCCCCCc--hhhHHHHHHHHHhcCChhhHH
Q 047359 102 LGLLDSGI-------YSSVMYNLVIDFYS----KKGDFGAAFDRLNEMCNGRNLTPG--FSTYSSILDGARRYEKTEVSD 168 (440)
Q Consensus 102 ~~~~~~~~-------~~~~~~~~li~~~~----~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~ 168 (440)
..+|+... .+...|...+..+. ..++.+.+.++|++... +++. ...|...... .+......+.
T Consensus 68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~---~P~~~~~~lw~~Y~~f-E~~~~~~~~~ 143 (493)
T 2uy1_A 68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQ---TPMGSLSELWKDFENF-ELELNKITGK 143 (493)
T ss_dssp HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHT---SCCTTHHHHHHHHHHH-HHHHCHHHHH
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHh---ChhhhHHHHHHHHHHH-HHHhccccHH
Confidence 55555533 34456666666543 24567778888888876 2221 1122222111 1111122222
Q ss_pred HHHHHHHhcCCCCcccccchHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhh-------ccHHHHHH
Q 047359 169 RIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKE-------GRVKEAIQ 241 (440)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~a~~ 241 (440)
++..+. .+.+..|..+++.+...-...+...|...+.--... +..+.+..
T Consensus 144 ~~~~~~-----------------------~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~ 200 (493)
T 2uy1_A 144 KIVGDT-----------------------LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHF 200 (493)
T ss_dssp HHHHHH-----------------------HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHH
T ss_pred HHHHHH-----------------------hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHH
Confidence 222211 112333444444433211111334555544432211 11456778
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcC-
Q 047359 242 IYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKG- 320 (440)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~- 320 (440)
+|+++....+ .+...|...+..+.+.|+++.|..+++..... +.+...+.. |....+.++. ++.+.+.-
T Consensus 201 ~ye~al~~~p-~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~---~~~l~~~~~ 270 (493)
T 2uy1_A 201 IHNYILDSFY-YAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAV---YGDLKRKYS 270 (493)
T ss_dssp HHHHHHHHTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHH---HHHHHHHTC
T ss_pred HHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHH---HHHHHHHHH
Confidence 9999888643 35778888888889999999999999999987 333333322 2221111111 22222110
Q ss_pred -----------CCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhc-CcHHHHHHHHHHHHH
Q 047359 321 -----------LLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKD-GRMEEAVRIFDYMKE 388 (440)
Q Consensus 321 -----------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~ 388 (440)
.......|...+....+.++.+.|..+|++. +. ...+...|......-... ++.+.|..+|+...+
T Consensus 271 ~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~ 348 (493)
T 2uy1_A 271 MGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLL 348 (493)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHH
T ss_pred hhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 0112245666677777788899999999999 32 223444554333332233 369999999999998
Q ss_pred cCCCchhhHHHHHHHHHhcccHHHHHHHHHHH
Q 047359 389 LKVVSSSSFVIVVSRLCHLKELRKAMKNHDEM 420 (440)
Q Consensus 389 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 420 (440)
..+.++..+...+....+.|+.+.|..+|+++
T Consensus 349 ~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 349 KHPDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 87667777777888888899999999998886
No 101
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.20 E-value=4.1e-09 Score=85.68 Aligned_cols=184 Identities=7% Similarity=-0.044 Sum_probs=122.7
Q ss_pred CHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh----h
Q 047359 219 QDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVR--DSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAM----E 292 (440)
Q Consensus 219 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~ 292 (440)
+...+..+...+.+.|++++|...|+++.+..+... ...+..+..++.+.|++++|...++.+.+.. |+.. .
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a 80 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYV 80 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHH
Confidence 445566677788899999999999999988643321 3567778888999999999999999988764 3322 3
Q ss_pred HHHHHHHHHc------------------CCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhc
Q 047359 293 LSRFVASQCG------------------KGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKL 354 (440)
Q Consensus 293 ~~~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 354 (440)
+..+..++.. .|++++|...|+++.+..+. +...+..... ...+...
T Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~--------------l~~~~~~ 145 (225)
T 2yhc_A 81 MYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKR--------------LVFLKDR 145 (225)
T ss_dssp HHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHH--------------HHHHHHH
T ss_pred HHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHH--------------HHHHHHH
Confidence 3344444433 34555555555555554221 1111111100 0000000
Q ss_pred cCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCch---hhHHHHHHHHHhcccHHHHHHHHHHHHHC
Q 047359 355 KGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSS---SSFVIVVSRLCHLKELRKAMKNHDEMLKM 423 (440)
Q Consensus 355 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 423 (440)
.......+...|.+.|++++|+..|+++.+..|.++ .++..+..++.+.|++++|.+.++.+...
T Consensus 146 ----~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 146 ----LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp ----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred ----HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 001113456778899999999999999999887744 67889999999999999999999998874
No 102
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.20 E-value=6.6e-11 Score=89.40 Aligned_cols=133 Identities=12% Similarity=0.036 Sum_probs=110.3
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCc
Q 047359 296 FVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGR 375 (440)
Q Consensus 296 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 375 (440)
|...+...|++++|+..++......+. +...+..+...|...|++++|++.|++.++..+. +..+|..+..+|.+.|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~-~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQ-KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHH-HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCc
Confidence 344556678999999999988765322 4556778889999999999999999999987655 78899999999999999
Q ss_pred HHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcccHHHHHHH-HHHHHHCCCCCCHHHH
Q 047359 376 MEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLKELRKAMKN-HDEMLKMGHKPDEATY 432 (440)
Q Consensus 376 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~-~~~m~~~~~~p~~~t~ 432 (440)
+++|+..|+++.+.+|.++.++..+...|.+.|++++|.+. +++..+ +.|+....
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~--l~P~~~~~ 136 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK--LFPGSPAV 136 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH--HSTTCHHH
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH--hCcCCHHH
Confidence 99999999999999999999999999999999999877665 588887 56766543
No 103
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.20 E-value=1.8e-09 Score=79.67 Aligned_cols=127 Identities=18% Similarity=0.199 Sum_probs=60.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCc
Q 047359 261 FVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQ 340 (440)
Q Consensus 261 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 340 (440)
+...+...|++++|..+++.+.+.+ +.+...+..+...+...|++++|...++++...+.. +...+..+...+...|+
T Consensus 7 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 84 (136)
T 2fo7_A 7 LGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGD 84 (136)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHHhcC
Confidence 3344444444444444444444332 122333444444444445555555555544443222 33444445555555555
Q ss_pred HHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 047359 341 IDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELK 390 (440)
Q Consensus 341 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 390 (440)
+++|.+.++++.+.... +...+..+...+.+.|++++|...++++.+.+
T Consensus 85 ~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 85 YDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 55555555555544222 34455555555556666666666665555443
No 104
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.18 E-value=4.6e-09 Score=84.45 Aligned_cols=175 Identities=13% Similarity=0.038 Sum_probs=90.3
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCC----CHHHHHHHHH
Q 047359 239 AIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKG----KWKEVEELLS 314 (440)
Q Consensus 239 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~ 314 (440)
|++.|++..+.| +...+..+...+...+++++|..+|+...+.+ +...+..+...|.. + ++++|.+.|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 334444444432 33444444445555555555555555555443 23344444444444 3 5555555555
Q ss_pred HHHhcCCCCchhhhHHHHHHHHc----CCcHHHHHHHHHHHHhccCC-cCHHhHHHHHHHHHh----cCcHHHHHHHHHH
Q 047359 315 AVLDKGLLLDSFCCSSLMEYYCS----NRQIDKAIALHIKIEKLKGS-LDVATYDVLLDGLFK----DGRMEEAVRIFDY 385 (440)
Q Consensus 315 ~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~----~g~~~~a~~~~~~ 385 (440)
+..+.+ +...+..+...|.. .+++++|.+.|++..+.+.. .+...+..|...|.. .++.++|...|++
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 555443 34444455555544 55666666666666554321 014455555555555 5566666666666
Q ss_pred HHHcCCCchhhHHHHHHHHHhc-c-----cHHHHHHHHHHHHHCC
Q 047359 386 MKELKVVSSSSFVIVVSRLCHL-K-----ELRKAMKNHDEMLKMG 424 (440)
Q Consensus 386 ~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~m~~~~ 424 (440)
..+. +.++.++..+...|... | ++++|...|++..+.|
T Consensus 155 A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 155 SSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 6555 22444555555555432 2 5666666666666654
No 105
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.18 E-value=3.7e-09 Score=100.68 Aligned_cols=173 Identities=10% Similarity=-0.086 Sum_probs=107.1
Q ss_pred hhcCcHHHHHHHHHHHH--------hcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 047359 196 SDMGKTYAAEMIFKRAC--------DEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCK 267 (440)
Q Consensus 196 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 267 (440)
...|++++|.+.+++.. +..+. +...+..+..++.+.|++++|+..|++..+.+.. +...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSE-SVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTT-CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccccc-chhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 56667777777777666 33222 4456666666677777777777777776665432 45566666666777
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHH
Q 047359 268 EHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIAL 347 (440)
Q Consensus 268 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 347 (440)
.|++++|...|+++.+.. +.+...+..+..++.+.|++++ .+.|++..+.++. +...|..+..++...|++++|++.
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHH
Confidence 777777777777776653 2344556666666777777777 7777777665443 555666667777777777777777
Q ss_pred HHHHHhccCCcCHHhHHHHHHHHHhcC
Q 047359 348 HIKIEKLKGSLDVATYDVLLDGLFKDG 374 (440)
Q Consensus 348 ~~~~~~~~~~p~~~~~~~l~~~~~~~g 374 (440)
|+++.+.+.. +...+..+..++...+
T Consensus 557 ~~~al~l~P~-~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 557 LDEVPPTSRH-FTTARLTSAVTLLSGR 582 (681)
T ss_dssp HHTSCTTSTT-HHHHHHHHHHHTC---
T ss_pred HHhhcccCcc-cHHHHHHHHHHHHccC
Confidence 7766654322 3445555555554433
No 106
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.17 E-value=1.3e-09 Score=92.18 Aligned_cols=165 Identities=13% Similarity=-0.017 Sum_probs=119.7
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhH-HHH
Q 047359 254 RDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCS-SLM 332 (440)
Q Consensus 254 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~ 332 (440)
+...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.... |+..... ...
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHH
Confidence 44555666667777788888888888777653 3355667777777778888888888887776553 3333222 222
Q ss_pred HHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCc--hhhHHHHHHHHHhcccH
Q 047359 333 EYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVS--SSSFVIVVSRLCHLKEL 410 (440)
Q Consensus 333 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~ 410 (440)
..+...++.+.|...+++.....+. +...+..+...+...|++++|...|+++.+..|.+ ..++..++..+...|+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 2355667777788888888876544 67788888888888888888888888888888774 77888888888888888
Q ss_pred HHHHHHHHHHHH
Q 047359 411 RKAMKNHDEMLK 422 (440)
Q Consensus 411 ~~a~~~~~~m~~ 422 (440)
++|...+++.+.
T Consensus 272 ~~a~~~~r~al~ 283 (287)
T 3qou_A 272 DALASXYRRQLY 283 (287)
T ss_dssp CHHHHHHHHHHH
T ss_pred CcHHHHHHHHHH
Confidence 888888877653
No 107
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.15 E-value=5.9e-10 Score=86.82 Aligned_cols=161 Identities=10% Similarity=-0.010 Sum_probs=107.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHH-HH
Q 047359 258 YYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEY-YC 336 (440)
Q Consensus 258 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~ 336 (440)
+......+...|++++|...++...+.. +.+...+..+...+...|++++|...++++....+ +...+...... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHH
Confidence 4445556666777777777777665542 23455666666777777777777777776655432 32222221111 11
Q ss_pred cCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCC--chhhHHHHHHHHHhcccHHHHH
Q 047359 337 SNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVV--SSSSFVIVVSRLCHLKELRKAM 414 (440)
Q Consensus 337 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~ 414 (440)
..++...|...+++..+..+. +...+..+...+...|++++|...|+++.+..|. ++..+..+...+...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 222233467778887775443 5778888888888899999999999988888776 3568888888888889988888
Q ss_pred HHHHHHHH
Q 047359 415 KNHDEMLK 422 (440)
Q Consensus 415 ~~~~~m~~ 422 (440)
..|++.+.
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887654
No 108
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.15 E-value=1e-09 Score=102.65 Aligned_cols=165 Identities=8% Similarity=-0.069 Sum_probs=118.2
Q ss_pred hccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHH
Q 047359 233 EGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEEL 312 (440)
Q Consensus 233 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 312 (440)
.|++++|...+++..+.... +...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 47888899999888776533 56778888888889999999999999988764 34567788888888889999999999
Q ss_pred HHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhc---CcHHHHHHHHHHHHHc
Q 047359 313 LSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKD---GRMEEAVRIFDYMKEL 389 (440)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~ 389 (440)
+++..+.... +...+..+..+|...|++++|.+.+++..+.... +...+..+...+... |+.++|.+.++++.+.
T Consensus 80 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9988877544 6678888888899999999999999988876543 567788888888888 8999999999999888
Q ss_pred CCCchhhHHHHH
Q 047359 390 KVVSSSSFVIVV 401 (440)
Q Consensus 390 ~~~~~~~~~~l~ 401 (440)
++.+...+..+.
T Consensus 158 ~p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVGAVEPFAFLS 169 (568)
T ss_dssp TCCCSCHHHHTT
T ss_pred CCcccChHHHhC
Confidence 887665555544
No 109
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.14 E-value=1.2e-08 Score=82.88 Aligned_cols=189 Identities=10% Similarity=-0.077 Sum_probs=135.1
Q ss_pred ccchHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCC--HHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCCh--hhHHH
Q 047359 185 LSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQ--DDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRD--SDYYA 260 (440)
Q Consensus 185 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ 260 (440)
...+..+...+.+.|++++|...|+++.+..+... ...+..+..++.+.|++++|+..|+++.+..+.... ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 44566778889999999999999999998755422 357788899999999999999999999987543221 23444
Q ss_pred HHHHHHh------------------cCChHHHHHHHHHHHHcCCCCChh-hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC
Q 047359 261 FVNVLCK------------------EHQPEEVCGLLRDVVERGYIPCAM-ELSRFVASQCGKGKWKEVEELLSAVLDKGL 321 (440)
Q Consensus 261 l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 321 (440)
+..++.. .|++++|...|+.+.+.. |+.. ....... +..+...
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~--------------l~~~~~~-- 145 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKR--------------LVFLKDR-- 145 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHH--------------HHHHHHH--
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHH--------------HHHHHHH--
Confidence 4555543 578999999999998763 4432 2221111 1111100
Q ss_pred CCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcC--HHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCc
Q 047359 322 LLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLD--VATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVS 393 (440)
Q Consensus 322 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 393 (440)
.......+...|.+.|++++|+..|+++++..+... ...+..+..+|.+.|+.++|.+.++.+...+|.+
T Consensus 146 --~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 146 --LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp --HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred --HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 011123456778899999999999999998643311 2568889999999999999999999998887763
No 110
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.12 E-value=2.8e-09 Score=85.49 Aligned_cols=128 Identities=11% Similarity=-0.030 Sum_probs=88.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCc
Q 047359 261 FVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQ 340 (440)
Q Consensus 261 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 340 (440)
+..++.+.|++++|...++...+.. +.+...+..+...+...|++++|...|++..+..+. +...+..+...|...|+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhH
Confidence 6777788888888888888887764 345667778888888888888888888888877544 56677777777655543
Q ss_pred --HHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCC
Q 047359 341 --IDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVV 392 (440)
Q Consensus 341 --~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 392 (440)
...+...++.... ..|....+.....++...|++++|+..|+++.+..|.
T Consensus 138 ~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 138 QEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 3444555555432 2333334445566677788888888888888887665
No 111
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.10 E-value=3.3e-09 Score=99.28 Aligned_cols=156 Identities=8% Similarity=-0.076 Sum_probs=120.2
Q ss_pred cCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHH
Q 047359 198 MGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGL 277 (440)
Q Consensus 198 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 277 (440)
.|++++|.+.+++..+..+. +...+..+...+...|++++|...+++..+.... +...+..+...+...|++++|...
T Consensus 2 ~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 47889999999998876554 6788999999999999999999999999987643 677889999999999999999999
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcC---CcHHHHHHHHHHHHhc
Q 047359 278 LRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSN---RQIDKAIALHIKIEKL 354 (440)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~ 354 (440)
+++..+.. +.+...+..+...+...|++++|.+.+++..+.... +...+..+...+... |+.++|.+.+++..+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99998874 445678889999999999999999999999887554 677888899999999 9999999999999987
Q ss_pred cCC
Q 047359 355 KGS 357 (440)
Q Consensus 355 ~~~ 357 (440)
+..
T Consensus 158 ~p~ 160 (568)
T 2vsy_A 158 GVG 160 (568)
T ss_dssp TCC
T ss_pred CCc
Confidence 544
No 112
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.09 E-value=5.3e-09 Score=81.37 Aligned_cols=158 Identities=11% Similarity=0.014 Sum_probs=88.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhccc----CCchhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCchhhHHHHHHH-H
Q 047359 84 TWSLVAQILCRSGKFEVVLGLLDSGI----YSSVMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDG-A 158 (440)
Q Consensus 84 ~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~-~ 158 (440)
.+..+...+...|++++|...|++.. .+...+..+..++.+.|++++|...|++..+ ..|+...+..+... +
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~---~~p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPL---EYQDNSYKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG---GGCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh---ccCChHHHHHHHHHHH
Confidence 34455556666777777777777665 3445566677777777777777777777654 33332222211111 1
Q ss_pred HhcCChhhHHHHHHHHHhcCCCCcccccchHHHHHHHhhcCcHHHHHHHHHHHHhcCCCC-CHHhHHHHHHHHhhhccHH
Q 047359 159 RRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIEL-QDDTCGCMLKALSKEGRVK 237 (440)
Q Consensus 159 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~ 237 (440)
...+....+...+++..+.. |++ ...+..+...+...|++++|...|+++.+..+.+ +...+..+...+...|+.+
T Consensus 85 ~~~~~~~~a~~~~~~al~~~--P~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 161 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAAN--PDN-FELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGN 161 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHS--TTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSC
T ss_pred HhhcccchHHHHHHHHHHhC--CCC-HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCC
Confidence 12222334566666665543 432 4555556666666666666666666666554432 2345556666666666666
Q ss_pred HHHHHHHHHH
Q 047359 238 EAIQIYHLIS 247 (440)
Q Consensus 238 ~a~~~~~~~~ 247 (440)
+|...|++..
T Consensus 162 ~A~~~y~~al 171 (176)
T 2r5s_A 162 AIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHHH
T ss_pred cHHHHHHHHH
Confidence 6666665543
No 113
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.08 E-value=3.9e-09 Score=76.79 Aligned_cols=103 Identities=15% Similarity=0.081 Sum_probs=73.8
Q ss_pred hhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHh
Q 047359 327 CCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCH 406 (440)
Q Consensus 327 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 406 (440)
.+......|.+.|++++|++.|++.++..+. +...|..+..+|.+.|++++|+..|+++.+.++.++.+|..+..++..
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 4555666777777777777777777765443 566777777777777777777777777777777777777777777777
Q ss_pred cccHHHHHHHHHHHHHCCCCCCHHHH
Q 047359 407 LKELRKAMKNHDEMLKMGHKPDEATY 432 (440)
Q Consensus 407 ~g~~~~a~~~~~~m~~~~~~p~~~t~ 432 (440)
.|++++|++.|++.++ +.|+....
T Consensus 94 ~~~~~~A~~~~~~al~--l~P~~~~a 117 (126)
T 4gco_A 94 MREWSKAQRAYEDALQ--VDPSNEEA 117 (126)
T ss_dssp TTCHHHHHHHHHHHHH--HCTTCHHH
T ss_pred CCCHHHHHHHHHHHHH--HCcCCHHH
Confidence 7777777777777777 45655433
No 114
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.07 E-value=3.3e-09 Score=79.60 Aligned_cols=104 Identities=13% Similarity=-0.004 Sum_probs=85.2
Q ss_pred chhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHH
Q 047359 324 DSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSR 403 (440)
Q Consensus 324 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 403 (440)
+...+..+...+.+.|++++|...|+++.+..+. +...|..+..+|...|++++|+..|+++.+.+|.++..|..+..+
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHH
Confidence 3445667777888888888888888888886544 677888888888888999999999998888888888888888888
Q ss_pred HHhcccHHHHHHHHHHHHHCCCCCCHH
Q 047359 404 LCHLKELRKAMKNHDEMLKMGHKPDEA 430 (440)
Q Consensus 404 ~~~~g~~~~a~~~~~~m~~~~~~p~~~ 430 (440)
|.+.|++++|...|++.++ +.||..
T Consensus 114 ~~~lg~~~eA~~~~~~al~--l~~~~~ 138 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQ--HSNDEK 138 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCCCHH
T ss_pred HHHcCCHHHHHHHHHHHHH--hCCCHH
Confidence 8899999999999988887 456654
No 115
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.06 E-value=7.8e-09 Score=88.42 Aligned_cols=226 Identities=9% Similarity=-0.053 Sum_probs=154.3
Q ss_pred hcCChhhHHHHHHHHHhcCCCCcccccchHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHH
Q 047359 160 RYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEA 239 (440)
Q Consensus 160 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 239 (440)
..|++++|.+++++..+.. +. .+ +...++++.|...|.+. ...|...|++++|
T Consensus 3 ~~~~~~eA~~~~~~a~k~~--~~----~~------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A 55 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL--KT----SF------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQA 55 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH--CC----CS------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHHHHHHc--cc----cc------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHH
Confidence 3567888888888877642 11 00 11146777777777654 3466778899999
Q ss_pred HHHHHHHHHcCC----CC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CC--ChhhHHHHHHHHHcCCCHHHH
Q 047359 240 IQIYHLISERGI----TV-RDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGY---IP--CAMELSRFVASQCGKGKWKEV 309 (440)
Q Consensus 240 ~~~~~~~~~~~~----~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~a 309 (440)
...|.+..+... .+ -..+|..+...|...|++++|...++...+... .+ ...++..+...|.. |++++|
T Consensus 56 ~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A 134 (307)
T 2ifu_A 56 KDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKA 134 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHH
Confidence 888887755311 11 134677888888899999999999988765311 11 23567778888888 999999
Q ss_pred HHHHHHHHhcCCCC-----chhhhHHHHHHHHcCCcHHHHHHHHHHHHhccC----CcC-HHhHHHHHHHHHhcCcHHHH
Q 047359 310 EELLSAVLDKGLLL-----DSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKG----SLD-VATYDVLLDGLFKDGRMEEA 379 (440)
Q Consensus 310 ~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~p~-~~~~~~l~~~~~~~g~~~~a 379 (440)
+..+++..+..... ...++..+...|...|++++|+..|++..+... .+. ...+..++.++...|++++|
T Consensus 135 ~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A 214 (307)
T 2ifu_A 135 VHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAA 214 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHH
Confidence 99999887542111 145677888899999999999999999886421 111 23566677788888999999
Q ss_pred HHHHHHHHHcCCCch-----hhHHHHHHHHHhcccHHHHHH
Q 047359 380 VRIFDYMKELKVVSS-----SSFVIVVSRLCHLKELRKAMK 415 (440)
Q Consensus 380 ~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~a~~ 415 (440)
...|++.. ..|... .....++.++ ..|+.+.+.+
T Consensus 215 ~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 215 QKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 99999988 666521 2344455555 5667665555
No 116
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.05 E-value=5.7e-08 Score=77.97 Aligned_cols=177 Identities=10% Similarity=-0.055 Sum_probs=105.8
Q ss_pred HHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC----ChHHHHHHHH
Q 047359 204 AEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEH----QPEEVCGLLR 279 (440)
Q Consensus 204 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~ 279 (440)
|.+.|++..+. -++..+..+...|...+++++|...|++..+.| +...+..+...|.. + ++++|..+|+
T Consensus 5 A~~~~~~aa~~---g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEA---GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHC---CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 34444444443 244555556666666666666666666666554 33445555555555 4 6666666666
Q ss_pred HHHHcCCCCChhhHHHHHHHHHc----CCCHHHHHHHHHHHHhcCCC-CchhhhHHHHHHHHc----CCcHHHHHHHHHH
Q 047359 280 DVVERGYIPCAMELSRFVASQCG----KGKWKEVEELLSAVLDKGLL-LDSFCCSSLMEYYCS----NRQIDKAIALHIK 350 (440)
Q Consensus 280 ~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~ 350 (440)
...+.+ +...+..|...|.. .+++++|.+.|++..+.+.. .+...+..|...|.. .+++++|...|++
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 666543 34455555555655 56777777777777665431 024556666666666 6677777777777
Q ss_pred HHhccCCcCHHhHHHHHHHHHhc-C-----cHHHHHHHHHHHHHcCCC
Q 047359 351 IEKLKGSLDVATYDVLLDGLFKD-G-----RMEEAVRIFDYMKELKVV 392 (440)
Q Consensus 351 ~~~~~~~p~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~~~~ 392 (440)
..+. ..+...+..|...|... | +.++|...|++..+.|.+
T Consensus 155 A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 155 SSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 7765 12344566666666543 2 677777777777776543
No 117
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.04 E-value=1.1e-07 Score=80.63 Aligned_cols=163 Identities=17% Similarity=0.104 Sum_probs=120.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCC-CCCh----hhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCC-c----hhhhH
Q 047359 260 AFVNVLCKEHQPEEVCGLLRDVVERGY-IPCA----MELSRFVASQCGKGKWKEVEELLSAVLDKGLLL-D----SFCCS 329 (440)
Q Consensus 260 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~----~~~~~ 329 (440)
..+..+...|++++|..+++...+... .|+. ..+..+...+...+++++|...+++..+..... + ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 345667788999999999988876421 2221 123346666777789999999999998743222 2 22688
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHhc-----cCCcC-HHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCC------chhhH
Q 047359 330 SLMEYYCSNRQIDKAIALHIKIEKL-----KGSLD-VATYDVLLDGLFKDGRMEEAVRIFDYMKELKVV------SSSSF 397 (440)
Q Consensus 330 ~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------~~~~~ 397 (440)
.+...|...|++++|...++++.+. +..+. ..++..+...|.+.|++++|...+++..+.... -..++
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 8888999999999999999998842 11222 347788999999999999999999988754322 25688
Q ss_pred HHHHHHHHhccc-HHHHHHHHHHHHH
Q 047359 398 VIVVSRLCHLKE-LRKAMKNHDEMLK 422 (440)
Q Consensus 398 ~~l~~~~~~~g~-~~~a~~~~~~m~~ 422 (440)
..+..++.+.|+ +++|.+.+++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 999999999994 6999999988764
No 118
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.03 E-value=9.5e-09 Score=86.87 Aligned_cols=166 Identities=9% Similarity=-0.024 Sum_probs=121.1
Q ss_pred CHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHH-HH
Q 047359 219 QDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSR-FV 297 (440)
Q Consensus 219 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~ 297 (440)
+...+..+...+...|++++|...|++..+..+. +...+..+...+.+.|++++|...++.+.... |+...... ..
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHH
Confidence 4456666777778888888888888888776543 56677778888888888888888888876653 44332222 22
Q ss_pred HHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCc-CHHhHHHHHHHHHhcCcH
Q 047359 298 ASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSL-DVATYDVLLDGLFKDGRM 376 (440)
Q Consensus 298 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~ 376 (440)
..+...++.+.|...+++.....+. +...+..+...+...|++++|...+.++.+..+.. +...+..++..+...|+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 2345566777788888888776544 67778888888888888888888888888765432 256788888888888888
Q ss_pred HHHHHHHHHHHH
Q 047359 377 EEAVRIFDYMKE 388 (440)
Q Consensus 377 ~~a~~~~~~~~~ 388 (440)
++|...+++...
T Consensus 272 ~~a~~~~r~al~ 283 (287)
T 3qou_A 272 DALASXYRRQLY 283 (287)
T ss_dssp CHHHHHHHHHHH
T ss_pred CcHHHHHHHHHH
Confidence 888888776543
No 119
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.03 E-value=1.2e-09 Score=82.15 Aligned_cols=95 Identities=14% Similarity=-0.004 Sum_probs=53.2
Q ss_pred hhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHh
Q 047359 327 CCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCH 406 (440)
Q Consensus 327 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 406 (440)
.+..+...+...|++++|...|++.....+. +...|..+..+|...|++++|+..|+++.+.+|.++..+..+..++..
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~ 101 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQ 101 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 3444455555555555555555555554332 445555555555555666666666665555555555555555555555
Q ss_pred cccHHHHHHHHHHHHH
Q 047359 407 LKELRKAMKNHDEMLK 422 (440)
Q Consensus 407 ~g~~~~a~~~~~~m~~ 422 (440)
.|++++|...|++.++
T Consensus 102 ~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 102 XGELAEAESGLFLAQE 117 (148)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 6666666655555554
No 120
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.02 E-value=1.9e-08 Score=80.96 Aligned_cols=131 Identities=8% Similarity=-0.075 Sum_probs=96.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHH
Q 047359 257 DYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYC 336 (440)
Q Consensus 257 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 336 (440)
.+..+...+...|++++|...++... .|+...+..+...+...|++++|...+++....... +...+..+..+|.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHH
Confidence 34556667777888888888887763 456677778888888888888888888888776533 5667777778888
Q ss_pred cCCcHHHHHHHHHHHHhccCCc---------------CHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCC
Q 047359 337 SNRQIDKAIALHIKIEKLKGSL---------------DVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVV 392 (440)
Q Consensus 337 ~~~~~~~a~~~~~~~~~~~~~p---------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 392 (440)
..|++++|.+.+++..+..... ....+..+..+|.+.|++++|.+.|+++.+..+.
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 8888888888888887753321 1256777777888888888888888888777665
No 121
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.02 E-value=2.8e-09 Score=83.04 Aligned_cols=123 Identities=12% Similarity=0.124 Sum_probs=54.5
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHH-HHcCCcH--HH
Q 047359 267 KEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEY-YCSNRQI--DK 343 (440)
Q Consensus 267 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~--~~ 343 (440)
..|++++|...++...+.. +.+...+..+...+...|++++|...+++.....+. +...+..+..+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchHH
Confidence 3444555555555544432 223344444445555555555555555555443222 33344444444 4444444 55
Q ss_pred HHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCC
Q 047359 344 AIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVV 392 (440)
Q Consensus 344 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 392 (440)
|...++++.+..+. +...+..+...|...|++++|...|+++.+..+.
T Consensus 100 A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 147 (177)
T 2e2e_A 100 TRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDLNSP 147 (177)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Confidence 55555554443222 3344444444555555555555555555544444
No 122
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.02 E-value=1.2e-08 Score=74.12 Aligned_cols=111 Identities=10% Similarity=0.000 Sum_probs=91.6
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHH
Q 047359 291 MELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGL 370 (440)
Q Consensus 291 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 370 (440)
..+......+.+.|++++|++.|++..+..+. +...|..+..+|...|++++|+..+++.++.+.. +...|..+..++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHH
Confidence 34566777888889999999999888877554 6778888888999999999999999998886544 677888899999
Q ss_pred HhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHH
Q 047359 371 FKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSR 403 (440)
Q Consensus 371 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 403 (440)
...|++++|.+.|+++.+..|.+..++..+..+
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 999999999999999999988888777766543
No 123
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.01 E-value=1.8e-07 Score=79.57 Aligned_cols=226 Identities=10% Similarity=0.029 Sum_probs=106.9
Q ss_pred ChhhHHHHHHHHHhcCCCCcccccchHHHHHHHhhcC-cHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhh-c-cHHHH
Q 047359 163 KTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMG-KTYAAEMIFKRACDEKIELQDDTCGCMLKALSKE-G-RVKEA 239 (440)
Q Consensus 163 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~a 239 (440)
..++|+++++.++..+ |+. ..+|+.--..+...| .+++++.+++.+...+++ +..+|+.-...+... + +++++
T Consensus 69 ~se~AL~lt~~~L~~n--P~~-ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~E 144 (349)
T 3q7a_A 69 KSERALELTEIIVRMN--PAH-YTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSE 144 (349)
T ss_dssp CSHHHHHHHHHHHHHC--TTC-HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHH
T ss_pred CCHHHHHHHHHHHHhC--chh-HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHH
Confidence 3345666666665543 332 344444444444445 355555555555555444 444555444444443 4 45555
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 047359 240 IQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDK 319 (440)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 319 (440)
+.+++.+.+...+ +...|+.-...+.+.+.++. .+ ...+.++++.++++.+.
T Consensus 145 L~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~--------------~~-------------~~~~~eELe~~~k~I~~ 196 (349)
T 3q7a_A 145 IEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGR--------------IS-------------EAQWGSELDWCNEMLRV 196 (349)
T ss_dssp HHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTC--------------CC-------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccc--------------cc-------------hhhHHHHHHHHHHHHHh
Confidence 5555555544332 33444333333333333320 00 00012455555555554
Q ss_pred CCCCchhhhHHHHHHHHcCCc-------HHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcH----------------
Q 047359 320 GLLLDSFCCSSLMEYYCSNRQ-------IDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRM---------------- 376 (440)
Q Consensus 320 ~~~~~~~~~~~l~~~~~~~~~-------~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~---------------- 376 (440)
.+. |...|+.....+.+.++ ++++++.+++.+...+. |...|+.+-..+.+.|+.
T Consensus 197 dp~-N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~ 274 (349)
T 3q7a_A 197 DGR-NNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKL 274 (349)
T ss_dssp CTT-CHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC---
T ss_pred CCC-CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCcccccccccccccccc
Confidence 433 44455555444444443 45555555555554433 455555544444444432
Q ss_pred ----HHHHHHHHHHHHcC------CCchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Q 047359 377 ----EEAVRIFDYMKELK------VVSSSSFVIVVSRLCHLKELRKAMKNHDEMLK 422 (440)
Q Consensus 377 ----~~a~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 422 (440)
....++..++.... +.++.++..++..|...|+.++|.++++.+.+
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 275 NPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp -----------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 22222222332222 33666777777777777777777777777654
No 124
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.01 E-value=2.7e-08 Score=76.39 Aligned_cols=130 Identities=10% Similarity=0.110 Sum_probs=99.8
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHH
Q 047359 291 MELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGL 370 (440)
Q Consensus 291 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 370 (440)
..+..+...+...|++++|...+++..+.... +...+..+...+...|++++|...+++..+.... +...+..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 34556666777788888888888888776443 5677778888888888899998888888876433 567788888888
Q ss_pred HhcCcHHHHHHHHHHHHHcCCCchhhHHHH--HHHHHhcccHHHHHHHHHHHHH
Q 047359 371 FKDGRMEEAVRIFDYMKELKVVSSSSFVIV--VSRLCHLKELRKAMKNHDEMLK 422 (440)
Q Consensus 371 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~a~~~~~~m~~ 422 (440)
...|++++|.+.++++.+..+.+...+..+ +..+...|++++|+..+++...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 899999999999999988887766666444 4447788899999988877643
No 125
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.98 E-value=1.2e-08 Score=87.21 Aligned_cols=199 Identities=11% Similarity=-0.027 Sum_probs=148.1
Q ss_pred hcCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHH
Q 047359 197 DMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCG 276 (440)
Q Consensus 197 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 276 (440)
..|++++|.+++++..+.... . .+...++++.|...|... ...|...|++++|..
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 357788899888887764221 0 111157888888887765 456778899999999
Q ss_pred HHHHHHHcCC----C-CChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCC---CC--chhhhHHHHHHHHcCCcHHHHHH
Q 047359 277 LLRDVVERGY----I-PCAMELSRFVASQCGKGKWKEVEELLSAVLDKGL---LL--DSFCCSSLMEYYCSNRQIDKAIA 346 (440)
Q Consensus 277 ~~~~~~~~~~----~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~a~~ 346 (440)
.+....+... . .-..+|+.+...|...|++++|...+++..+... .+ ...++..+...|.. |++++|++
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 9988765311 1 1134788888899999999999999998865311 11 23567788888888 99999999
Q ss_pred HHHHHHhccCCc-----CHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCc------hhhHHHHHHHHHhcccHHHHHH
Q 047359 347 LHIKIEKLKGSL-----DVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVS------SSSFVIVVSRLCHLKELRKAMK 415 (440)
Q Consensus 347 ~~~~~~~~~~~p-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~a~~ 415 (440)
.+++..+..... ...++..+...|.+.|++++|+..|+++.+..+.+ ...+..++.++...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 999988642211 14578889999999999999999999988754331 2366777788888899999999
Q ss_pred HHHHHH
Q 047359 416 NHDEML 421 (440)
Q Consensus 416 ~~~~m~ 421 (440)
.|++.+
T Consensus 217 ~~~~al 222 (307)
T 2ifu_A 217 CVRESY 222 (307)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 999988
No 126
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.92 E-value=5.4e-08 Score=70.46 Aligned_cols=113 Identities=16% Similarity=0.157 Sum_probs=63.5
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHH
Q 047359 291 MELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGL 370 (440)
Q Consensus 291 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 370 (440)
..+..+...+...|++++|.+.++++.+.... +...+..+...+...|++++|...++++.+.... +..++..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHH
Confidence 34445555555556666666666655544322 3445555555666666666666666666554322 445555666666
Q ss_pred HhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHH
Q 047359 371 FKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLC 405 (440)
Q Consensus 371 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 405 (440)
...|++++|...++++.+..|.++..+..+...+.
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 122 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 66666666666666666665555555555544443
No 127
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.92 E-value=1.6e-08 Score=85.20 Aligned_cols=194 Identities=12% Similarity=-0.068 Sum_probs=102.0
Q ss_pred HHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 047359 220 DDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVAS 299 (440)
Q Consensus 220 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 299 (440)
...+..+...+.+.|++++|...|++..+.... +...+..+..++.+.|++++|...++...+.. +.+...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 344555555566666666666666666554332 45555666666666666666666666665542 2344556666666
Q ss_pred HHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHH
Q 047359 300 QCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEA 379 (440)
Q Consensus 300 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 379 (440)
+...|++++|...+++..+..+. +...+...+....+ ..++.. +..........+......+... ..|+.++|
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~i~~~l~~l--~~~~~~~A 154 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALR---IAKKKR-WNSIEERRIHQESELHSYLTRL--IAAERERE 154 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHH---HHHHHH-HHHHHHTCCCCCCHHHHHHHHH--HHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHH---HHHHHH-HHHHHHHHHhhhHHHHHHHHHH--HHHHHHHH
Confidence 66666677776666666543211 11111111211111 111111 1112222233333333333222 25777778
Q ss_pred HHHHHHHHHcCCCchhhHHHHHHHHHhc-ccHHHHHHHHHHHHH
Q 047359 380 VRIFDYMKELKVVSSSSFVIVVSRLCHL-KELRKAMKNHDEMLK 422 (440)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~ 422 (440)
.+.+++..+..+.+......+...+.+. +.+++|.++|.++.+
T Consensus 155 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 155 LEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 7777777777666555555555555554 567778888877654
No 128
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.92 E-value=4.3e-08 Score=71.96 Aligned_cols=118 Identities=10% Similarity=0.024 Sum_probs=75.6
Q ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHH
Q 047359 289 CAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLD 368 (440)
Q Consensus 289 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 368 (440)
+...+..+...+...|++++|...+++..+.... +...+..+...+...|++++|.+.+++..+.... +...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHHH
Confidence 3345555666666666666666666666655332 4556666666677777777777777776665332 4566666777
Q ss_pred HHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcc
Q 047359 369 GLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLK 408 (440)
Q Consensus 369 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 408 (440)
++.+.|++++|.+.|++..+..+.+...+..+..++.+.|
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 7777777777777777777666666666666666665544
No 129
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.92 E-value=9.7e-07 Score=75.14 Aligned_cols=262 Identities=8% Similarity=-0.004 Sum_probs=155.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhcCCCCCCchh-hHHHHHHHHHhcC-ChhhHHHHHHHHHhcCCCCcccccchHHHHH
Q 047359 116 NLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFS-TYSSILDGARRYE-KTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQ 193 (440)
Q Consensus 116 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~ 193 (440)
+.+-....+.+..++|+++++.+.. +.|+.. .|+.--.++...| .+++++..++.++... |.+ ..+|+.-..
T Consensus 58 ~~~r~~~~~~e~se~AL~lt~~~L~---~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n--PKn-y~aW~hR~w 131 (349)
T 3q7a_A 58 DYFRAIAAKEEKSERALELTEIIVR---MNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN--LKS-YQVWHHRLL 131 (349)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT--CCC-HHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHH---hCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC--CCc-HHHHHHHHH
Confidence 3333444555666899999999987 667654 5666666677778 5999999999999866 543 677877777
Q ss_pred HHhhc-C-cHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHH--------HHHHHHHHHHHcCCCCChhhHHHHHH
Q 047359 194 KLSDM-G-KTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVK--------EAIQIYHLISERGITVRDSDYYAFVN 263 (440)
Q Consensus 194 ~~~~~-~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~ 263 (440)
.+.+. + ++++++++++.+.+..++ |...|+--.-.+.+.|.++ ++++.++++.+..+. +...|+....
T Consensus 132 lL~~l~~~~~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~ 209 (349)
T 3q7a_A 132 LLDRISPQDPVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWY 209 (349)
T ss_dssp HHHHHCCSCCHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 77776 7 889999999999988766 7888887777776666666 788888888877654 6667777666
Q ss_pred HHHhcCC-------hHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHH
Q 047359 264 VLCKEHQ-------PEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYC 336 (440)
Q Consensus 264 ~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 336 (440)
.+.+.+. ++++++.++.++... +-|...|+-+-..+.+.|+... .++.. +.|... ..+..
T Consensus 210 lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~--~~~~~-----~~~~~~---~~~~~-- 276 (349)
T 3q7a_A 210 LRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLV--PILPA-----ILPYTA---SKLNP-- 276 (349)
T ss_dssp HHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSG--GGHHH-----HGGGTC----------
T ss_pred HHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcc--ccccc-----cccccc---ccccc--
Confidence 6666554 345555555555442 2233444333333332222100 00000 000000 00000
Q ss_pred cCCcHHHHHHHHHHHHhcc-----CCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHH-HcCCCchhhHHHHH
Q 047359 337 SNRQIDKAIALHIKIEKLK-----GSLDVATYDVLLDGLFKDGRMEEAVRIFDYMK-ELKVVSSSSFVIVV 401 (440)
Q Consensus 337 ~~~~~~~a~~~~~~~~~~~-----~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~l~ 401 (440)
......++...+...+ -.++...+..|+..|...|+.++|.++++.+. +.+|.....|...+
T Consensus 277 ---~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~ 344 (349)
T 3q7a_A 277 ---DIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRR 344 (349)
T ss_dssp ------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred ---cchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHH
Confidence 0111112222222111 12466677778888888888888888888876 34444444444433
No 130
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.91 E-value=5.7e-09 Score=77.93 Aligned_cols=92 Identities=14% Similarity=0.009 Sum_probs=45.9
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhccc
Q 047359 330 SLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLKE 409 (440)
Q Consensus 330 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 409 (440)
.+...+...|++++|...|++.....+. +...|..+..+|.+.|++++|+..|+++.+.+|.++..+..+..++...|+
T Consensus 23 ~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 101 (142)
T 2xcb_A 23 ALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGD 101 (142)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCC
Confidence 3344444555555555555555443322 344444555555555555555555555555554444555555555555555
Q ss_pred HHHHHHHHHHHHH
Q 047359 410 LRKAMKNHDEMLK 422 (440)
Q Consensus 410 ~~~a~~~~~~m~~ 422 (440)
+++|...|++.++
T Consensus 102 ~~~A~~~~~~al~ 114 (142)
T 2xcb_A 102 LDGAESGFYSARA 114 (142)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555444
No 131
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.91 E-value=3.6e-08 Score=72.13 Aligned_cols=119 Identities=12% Similarity=0.010 Sum_probs=84.5
Q ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHH
Q 047359 290 AMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDG 369 (440)
Q Consensus 290 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 369 (440)
...+..+...+...|++++|...+++.....+. +...+..+...+...|++++|.+.+++..+.... +...+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHHHH
Confidence 445556666677777777777777777665432 5566677777777778888888888777765332 46677777777
Q ss_pred HHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcccH
Q 047359 370 LFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLKEL 410 (440)
Q Consensus 370 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 410 (440)
+...|++++|...++++.+..+.++..+..+..++.+.|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 88888888888888888777777777777777777766653
No 132
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.91 E-value=3.8e-08 Score=71.63 Aligned_cols=96 Identities=15% Similarity=0.038 Sum_probs=66.2
Q ss_pred hhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHH
Q 047359 326 FCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLC 405 (440)
Q Consensus 326 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 405 (440)
..+..+...+...|++++|+..|++..+..+. +...|..+..++.+.|++++|+..++++.+.+|.++..+..+..++.
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 34555556666777777777777777665433 55666777777777777777777777777776666777777777777
Q ss_pred hcccHHHHHHHHHHHHH
Q 047359 406 HLKELRKAMKNHDEMLK 422 (440)
Q Consensus 406 ~~g~~~~a~~~~~~m~~ 422 (440)
..|++++|...+++..+
T Consensus 84 ~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 84 AVKEYASALETLDAART 100 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHH
Confidence 77777777777777665
No 133
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.90 E-value=1.6e-07 Score=75.43 Aligned_cols=130 Identities=9% Similarity=-0.056 Sum_probs=106.9
Q ss_pred HhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 047359 221 DTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQ 300 (440)
Q Consensus 221 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 300 (440)
..+..+...+...|++++|...|++.. .|+...+..+...+...|++++|...++...+.. +.+...+..+...+
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHH
Confidence 345667778888999999999998773 4577888889999999999999999999988764 44667888888999
Q ss_pred HcCCCHHHHHHHHHHHHhcCCCCch----------------hhhHHHHHHHHcCCcHHHHHHHHHHHHhccC
Q 047359 301 CGKGKWKEVEELLSAVLDKGLLLDS----------------FCCSSLMEYYCSNRQIDKAIALHIKIEKLKG 356 (440)
Q Consensus 301 ~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 356 (440)
...|++++|...+++..+.... +. ..+..+..+|...|++++|.+.+++..+...
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRG-NQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTT-CSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHcccHHHHHHHHHHHHHhCCC-ccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 9999999999999999876433 22 6777888889999999999999999988543
No 134
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.90 E-value=5.4e-08 Score=84.20 Aligned_cols=129 Identities=11% Similarity=-0.044 Sum_probs=94.1
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCC--------------chhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCC
Q 047359 292 ELSRFVASQCGKGKWKEVEELLSAVLDKGLLL--------------DSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGS 357 (440)
Q Consensus 292 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 357 (440)
.+..+...+.+.|++++|...|++........ ....|..+..+|.+.|++++|+..+++.++....
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 228 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN 228 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 34444455555555555555555555443221 1467778888888888888888888888886543
Q ss_pred cCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcccHHHH-HHHHHHHH
Q 047359 358 LDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLKELRKA-MKNHDEML 421 (440)
Q Consensus 358 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a-~~~~~~m~ 421 (440)
+...|..+..+|...|++++|+..|+++.+..|.+..++..+..++.+.|+.++| ...+++|.
T Consensus 229 -~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 229 -NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888888888899999999999988888888888888888888888888888 44566654
No 135
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.88 E-value=2.5e-06 Score=72.25 Aligned_cols=132 Identities=8% Similarity=-0.031 Sum_probs=66.3
Q ss_pred hcCChh-hHHHHHHHHHhcCCCCcccccchHHHHHHHhhcCc----------HHHHHHHHHHHHhcCCCCCHHhHHHHHH
Q 047359 160 RYEKTE-VSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGK----------TYAAEMIFKRACDEKIELQDDTCGCMLK 228 (440)
Q Consensus 160 ~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 228 (440)
+.|.++ +|+...+.++..+ |++ ..+|+.--..+...+. +++++.+++.+...+++ +..+|+.-..
T Consensus 41 ~~~e~s~eaL~~t~~~L~~n--P~~-ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~w 116 (331)
T 3dss_A 41 QAGELDESVLELTSQILGAN--PDF-ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCW 116 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTC--TTC-HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC--chh-HHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 445543 5677777776644 442 3444443333333322 45555555555555444 5555555544
Q ss_pred HHhhhc--cHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCCChhhHHHHH
Q 047359 229 ALSKEG--RVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQ-PEEVCGLLRDVVERGYIPCAMELSRFV 297 (440)
Q Consensus 229 ~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~ 297 (440)
.+...+ ++++++.+++.+.+..+. +...|+.-...+...|. ++++++.+..+.+.+ +-|...|+...
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~ 186 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRS 186 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHH
T ss_pred HHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 444444 255666666666555443 44455544444445555 355555555555543 23444444333
No 136
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.87 E-value=7.1e-07 Score=75.67 Aligned_cols=166 Identities=16% Similarity=0.107 Sum_probs=114.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-----hhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCC---Cc--hh
Q 047359 257 DYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPC-----AMELSRFVASQCGKGKWKEVEELLSAVLDKGLL---LD--SF 326 (440)
Q Consensus 257 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~--~~ 326 (440)
.+...+..+...|++++|.+.++...+...... ...+..+...+...|++++|...+++..+.... +. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344456667778888888888877766432111 112334555667778888888888888753221 11 34
Q ss_pred hhHHHHHHHHcCCcHHHHHHHHHHHHhc---cC-Cc--CHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCC------ch
Q 047359 327 CCSSLMEYYCSNRQIDKAIALHIKIEKL---KG-SL--DVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVV------SS 394 (440)
Q Consensus 327 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~-~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------~~ 394 (440)
+++.+...|...|++++|...+++..+. .. .+ ...++..+...|.+.|++++|...+++..+.... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 6778888888999999999999888732 11 11 1257788888899999999999999887643211 25
Q ss_pred hhHHHHHHHHHhcccHHHH-HHHHHHHHH
Q 047359 395 SSFVIVVSRLCHLKELRKA-MKNHDEMLK 422 (440)
Q Consensus 395 ~~~~~l~~~~~~~g~~~~a-~~~~~~m~~ 422 (440)
.++..+..+|.+.|++++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6788888899999999999 776777653
No 137
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.87 E-value=4.3e-07 Score=76.99 Aligned_cols=166 Identities=12% Similarity=0.049 Sum_probs=90.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhcCCCCCCchh----hHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCccc---ccchH
Q 047359 117 LVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFS----TYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHF---LSGND 189 (440)
Q Consensus 117 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~ 189 (440)
..+..+...|++++|..++++..+.....|+.. .+..+...+...+++++|...+++..+......+. ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346677788888888888888776222333321 22335555566677788888887777643222110 12456
Q ss_pred HHHHHHhhcCcHHHHHHHHHHHHhc-----CCCC-CHHhHHHHHHHHhhhccHHHHHHHHHHHHHc----CCCCC-hhhH
Q 047359 190 YVIQKLSDMGKTYAAEMIFKRACDE-----KIEL-QDDTCGCMLKALSKEGRVKEAIQIYHLISER----GITVR-DSDY 258 (440)
Q Consensus 190 ~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~ 258 (440)
.+...|...|++++|...++++.+. +..+ ...++..+...|.+.|++++|...+++..+. +..+. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 6666666777777777666666531 1111 1224555556666666666666666554432 11111 3345
Q ss_pred HHHHHHHHhcCC-hHHHHHHHHHHH
Q 047359 259 YAFVNVLCKEHQ-PEEVCGLLRDVV 282 (440)
Q Consensus 259 ~~l~~~~~~~~~-~~~a~~~~~~~~ 282 (440)
..+..++.+.|+ +++|...++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 555555555553 355555555543
No 138
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.85 E-value=5.4e-08 Score=70.87 Aligned_cols=106 Identities=16% Similarity=0.144 Sum_probs=74.5
Q ss_pred hhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCc-------hhhHHH
Q 047359 327 CCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVS-------SSSFVI 399 (440)
Q Consensus 327 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-------~~~~~~ 399 (440)
.+..+...+.+.|++++|++.|++.++..+. +...|..+..+|.+.|++++|++.+++..+.++.+ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 4555667777777888888877777775443 56677777777888888888888887777655442 135666
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 047359 400 VVSRLCHLKELRKAMKNHDEMLKMGHKPDEATYKQV 435 (440)
Q Consensus 400 l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~l 435 (440)
+..++...|++++|++.|++.+. ..||..+...+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~~~l 122 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS--EFRDPELVKKV 122 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HSCCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh--hCcCHHHHHHH
Confidence 77777788888888888888776 45666555443
No 139
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.84 E-value=2.6e-08 Score=74.77 Aligned_cols=106 Identities=16% Similarity=0.034 Sum_probs=81.4
Q ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHH
Q 047359 289 CAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLD 368 (440)
Q Consensus 289 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 368 (440)
+...+..+...+...|++++|...|+......+. +...|..+..+|...|++++|+..|++.....+. +...+..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHH
Confidence 3445666777777888888888888888776544 6777778888888888888888888888876543 5677788888
Q ss_pred HHHhcCcHHHHHHHHHHHHHcCCCchhh
Q 047359 369 GLFKDGRMEEAVRIFDYMKELKVVSSSS 396 (440)
Q Consensus 369 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 396 (440)
+|...|++++|.+.|+++.+..+.++..
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence 8888888888888888888876664433
No 140
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.84 E-value=2.8e-08 Score=81.69 Aligned_cols=134 Identities=12% Similarity=-0.002 Sum_probs=86.0
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcC--HHhHHHHHHHHHh
Q 047359 295 RFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLD--VATYDVLLDGLFK 372 (440)
Q Consensus 295 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~ 372 (440)
.+...+...|++++|.++|..+...+ |+......+...+.+.+++++|+..|+...... .|. ...+..+..++..
T Consensus 107 ayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~ 183 (282)
T 4f3v_A 107 GFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAAN 183 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHH
Confidence 34555666777777777777776543 333244445556777788888888776444321 111 2356677777888
Q ss_pred cCcHHHHHHHHHHHHHcC--CC-chhhHHHHHHHHHhcccHHHHHHHHHHHHHCCCCCCHHHHH
Q 047359 373 DGRMEEAVRIFDYMKELK--VV-SSSSFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDEATYK 433 (440)
Q Consensus 373 ~g~~~~a~~~~~~~~~~~--~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~ 433 (440)
.|++++|+..|++..... |. .+........++.+.|+.++|...|+++.. ..|+...+.
T Consensus 184 LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a--~~P~~~~~~ 245 (282)
T 4f3v_A 184 LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT--THPEPKVAA 245 (282)
T ss_dssp TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSCCHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcHHHHH
Confidence 888888888888776433 22 445667777777788888888888888877 356633333
No 141
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.84 E-value=8.5e-08 Score=71.86 Aligned_cols=102 Identities=13% Similarity=0.032 Sum_probs=76.0
Q ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHH
Q 047359 290 AMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDG 369 (440)
Q Consensus 290 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 369 (440)
...+..+...+.+.|++++|...|++.....+. +...|..+..+|...|++++|+..|++..+..+. +...|..+..+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHH
Confidence 345666666777778888888888888776544 6677777778888888888888888888776544 56677778888
Q ss_pred HHhcCcHHHHHHHHHHHHHcCCCc
Q 047359 370 LFKDGRMEEAVRIFDYMKELKVVS 393 (440)
Q Consensus 370 ~~~~g~~~~a~~~~~~~~~~~~~~ 393 (440)
|.+.|++++|...|+++.+..+.+
T Consensus 114 ~~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCH
Confidence 888888888888888887776553
No 142
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.84 E-value=7.3e-07 Score=73.31 Aligned_cols=186 Identities=11% Similarity=-0.018 Sum_probs=82.5
Q ss_pred ccCCcchHHHHHHHHHhcCCccChHhHHHH-------HHHHHhccchhHHHHHHHHHHHcCCCCCh--------------
Q 047359 24 HKGLFMDGLEVYRMMRVYGFVPAVSACNAL-------LDALYRQNEIRLASCLYGAMVRDGVSPNK-------------- 82 (440)
Q Consensus 24 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l-------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------------- 82 (440)
+.++...|.+.|.++.+.. +-....|..+ ...+.+.++..++...+..-.+ +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 4677777777777777654 2345566655 3444444444444444444333 22221
Q ss_pred --------hhHHHHHHHHHhcCChHHHHHHHhccc---CCchhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCc--hh
Q 047359 83 --------FTWSLVAQILCRSGKFEVVLGLLDSGI---YSSVMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPG--FS 149 (440)
Q Consensus 83 --------~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~ 149 (440)
.....+...+...|++++|.++|+.+. |+......+...+.+.+++++|+..|+...+ .. .|. ..
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~-~~-d~~~~~~ 172 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGK-WP-DKFLAGA 172 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG-CS-CHHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhc-cC-CcccHHH
Confidence 112223344445555555555555544 2222333333344555555555555543322 00 010 11
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCcccccchHHHHHHHhhcCcHHHHHHHHHHHHhc
Q 047359 150 TYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDE 214 (440)
Q Consensus 150 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 214 (440)
.+..+..++...|++++|+..|++.......|............++.+.|+.++|...|+++...
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 33344444445555555555555444222112211223333444444444444444444444443
No 143
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.83 E-value=1.1e-07 Score=75.81 Aligned_cols=157 Identities=9% Similarity=-0.047 Sum_probs=76.9
Q ss_pred hhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc----CC-CCChhhHHHHHHHHHcCCC
Q 047359 231 SKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVER----GY-IPCAMELSRFVASQCGKGK 305 (440)
Q Consensus 231 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~ 305 (440)
...|++++|.++++.+.. ........+..+...+...|++++|...+++..+. +. +.....+..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 345677777774444433 22224455666666666677777777766666541 11 1122345555555556666
Q ss_pred HHHHHHHHHHHHhc----CCCC--chhhhHHHHHHHHcCCcHHHHHHHHHHHHhccC---CcC--HHhHHHHHHHHHhcC
Q 047359 306 WKEVEELLSAVLDK----GLLL--DSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKG---SLD--VATYDVLLDGLFKDG 374 (440)
Q Consensus 306 ~~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~p~--~~~~~~l~~~~~~~g 374 (440)
+++|...+++..+. +-.| ....+..+...+...|++++|...+++..+... .+. ..++..+...+...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 66666666555432 1011 122344455555555666666665555543210 011 122344555555555
Q ss_pred cHHHHHHHHHHHHH
Q 047359 375 RMEEAVRIFDYMKE 388 (440)
Q Consensus 375 ~~~~a~~~~~~~~~ 388 (440)
++++|.+.+++..+
T Consensus 162 ~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 162 NLLEAQQHWLRARD 175 (203)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 55555555555543
No 144
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.81 E-value=1.4e-05 Score=67.79 Aligned_cols=250 Identities=9% Similarity=0.037 Sum_probs=141.5
Q ss_pred HhcCChh-HHHHHHHHHhcCCCCCCchh-hHHHHHHHHHhcCC----------hhhHHHHHHHHHhcCCCCcccccchHH
Q 047359 123 SKKGDFG-AAFDRLNEMCNGRNLTPGFS-TYSSILDGARRYEK----------TEVSDRIVGLMVEKKLLPKHFLSGNDY 190 (440)
Q Consensus 123 ~~~~~~~-~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~~~ 190 (440)
.+.|.+. +|+++++.+.. +.|+.. .|+.--.++...+. +++++.+++.+.... |.+ ..+|+.
T Consensus 40 ~~~~e~s~eaL~~t~~~L~---~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~--PKn-y~aW~h 113 (331)
T 3dss_A 40 RQAGELDESVLELTSQILG---ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKS-YGTWHH 113 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHT---TCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--TTC-HHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHH---HCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC--CCC-HHHHHH
Confidence 4556654 78888888876 666544 34433333333332 567778888887755 443 667777
Q ss_pred HHHHHhhcC--cHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhcc-HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 047359 191 VIQKLSDMG--KTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGR-VKEAIQIYHLISERGITVRDSDYYAFVNVLCK 267 (440)
Q Consensus 191 l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 267 (440)
-...+...+ ++++++.+++.+.+..+. |...|+.-...+...|. ++++++.++.+.+..+. |...|+.....+..
T Consensus 114 R~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~ 191 (331)
T 3dss_A 114 RCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQ 191 (331)
T ss_dssp HHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHH
T ss_pred HHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHH
Confidence 777777777 478888888888887766 77778777777777777 58888888888887655 66677666655544
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcC---------
Q 047359 268 EHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSN--------- 338 (440)
Q Consensus 268 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------- 338 (440)
.+....+ ++. .-...+.++++++.+.......+. |...|+.+-..+.+.
T Consensus 192 l~~~~~~-------------~~~--------~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~~~~ 249 (331)
T 3dss_A 192 LHPQPDS-------------GPQ--------GRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCELSVE 249 (331)
T ss_dssp HSCCC---------------------------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGCCHH
T ss_pred hhhcccc-------------ccc--------cccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccccchH
Confidence 3210000 000 000012234444444444444332 344444333333322
Q ss_pred --CcHHHHHHHHHHHHhccCCcCH-HhHHHHH---HHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHH
Q 047359 339 --RQIDKAIALHIKIEKLKGSLDV-ATYDVLL---DGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRL 404 (440)
Q Consensus 339 --~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~---~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 404 (440)
+.++++++.++++.+.. |+. ..+..++ ......|..+++...+.++.+.+|....-|..+...+
T Consensus 250 ~~~~l~~el~~~~elle~~--pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 250 KSTVLQSELESCKELQELE--PENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp HHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhC--cccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 34566666666666643 332 1221111 1112345666777777777777666555555544433
No 145
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.81 E-value=6.9e-08 Score=69.55 Aligned_cols=100 Identities=7% Similarity=-0.065 Sum_probs=83.5
Q ss_pred hhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHh
Q 047359 327 CCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCH 406 (440)
Q Consensus 327 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 406 (440)
.+..+...+.+.|++++|...+++..+..+. +...|..+..++...|++++|+..|+++.+.+|.++.++..+..++..
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 4556667788999999999999999886544 777888899999999999999999999999998888899999999999
Q ss_pred cccHHHHHHHHHHHHHCCCCCCH
Q 047359 407 LKELRKAMKNHDEMLKMGHKPDE 429 (440)
Q Consensus 407 ~g~~~~a~~~~~~m~~~~~~p~~ 429 (440)
.|++++|+..+++.++ ..|+.
T Consensus 98 ~g~~~~A~~~~~~al~--~~P~~ 118 (121)
T 1hxi_A 98 EHNANAALASLRAWLL--SQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHHHC-------
T ss_pred cCCHHHHHHHHHHHHH--hCcCC
Confidence 9999999999999887 45543
No 146
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.80 E-value=1.7e-07 Score=67.68 Aligned_cols=102 Identities=17% Similarity=0.241 Sum_probs=90.8
Q ss_pred hhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHH
Q 047359 325 SFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRL 404 (440)
Q Consensus 325 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 404 (440)
...+..+...+...|++++|.+.++++.+... .+...+..+...+.+.|++++|...++++.+..+.++..+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 56778888899999999999999999998643 36778899999999999999999999999998888889999999999
Q ss_pred HhcccHHHHHHHHHHHHHCCCCCCH
Q 047359 405 CHLKELRKAMKNHDEMLKMGHKPDE 429 (440)
Q Consensus 405 ~~~g~~~~a~~~~~~m~~~~~~p~~ 429 (440)
...|++++|...++++.+. .|+.
T Consensus 88 ~~~~~~~~A~~~~~~~~~~--~~~~ 110 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALEL--DPNN 110 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTC
T ss_pred HHhcCHHHHHHHHHHHHHh--CCCc
Confidence 9999999999999999883 4544
No 147
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.80 E-value=3.8e-07 Score=69.82 Aligned_cols=127 Identities=9% Similarity=-0.072 Sum_probs=74.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHc
Q 047359 258 YYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCS 337 (440)
Q Consensus 258 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 337 (440)
+..+...+...|++++|...++...+.. +.+...+..+...+...|++++|...+++..+..+. +...+..+..++..
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHH
Confidence 4444555555666666666666655542 224455556666666666666666666666655332 45566666667777
Q ss_pred CCcHHHHHHHHHHHHhccCCcCHHhHH--HHHHHHHhcCcHHHHHHHHHHHH
Q 047359 338 NRQIDKAIALHIKIEKLKGSLDVATYD--VLLDGLFKDGRMEEAVRIFDYMK 387 (440)
Q Consensus 338 ~~~~~~a~~~~~~~~~~~~~p~~~~~~--~l~~~~~~~g~~~~a~~~~~~~~ 387 (440)
.|++++|...+++..+.... +...+. ..+..+.+.|++++|.+.++...
T Consensus 94 ~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 77777777777777665332 333332 23333566677777777766554
No 148
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.79 E-value=2.6e-06 Score=72.15 Aligned_cols=167 Identities=12% Similarity=-0.052 Sum_probs=115.8
Q ss_pred hHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCCh-----hhHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CCC--hh
Q 047359 222 TCGCMLKALSKEGRVKEAIQIYHLISERGITVRD-----SDYYAFVNVLCKEHQPEEVCGLLRDVVERGY---IPC--AM 291 (440)
Q Consensus 222 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~ 291 (440)
.+...+..+...|++++|.+.+.+..+.....+. ..+..+...+...|++++|...++...+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3444566677778888888888777665322111 2233455556777888888888888765321 111 34
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHh---cCCC-C--chhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCC-----cCH
Q 047359 292 ELSRFVASQCGKGKWKEVEELLSAVLD---KGLL-L--DSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGS-----LDV 360 (440)
Q Consensus 292 ~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~-~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----p~~ 360 (440)
+++.+...|...|++++|...+++..+ .... + ...++..+...|...|++++|...+++..+.... .-.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 677888888889999999999988862 2111 1 1257788888999999999999999988754211 115
Q ss_pred HhHHHHHHHHHhcCcHHHH-HHHHHHHHH
Q 047359 361 ATYDVLLDGLFKDGRMEEA-VRIFDYMKE 388 (440)
Q Consensus 361 ~~~~~l~~~~~~~g~~~~a-~~~~~~~~~ 388 (440)
.+|..+..+|.+.|++++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6788899999999999999 777877654
No 149
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.79 E-value=1.9e-07 Score=67.84 Aligned_cols=110 Identities=12% Similarity=-0.005 Sum_probs=77.1
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHH
Q 047359 291 MELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGL 370 (440)
Q Consensus 291 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 370 (440)
..+..+...+...|++++|...|++..+..+. +...|..+..+|...|++++|+..+++..+..+. +...|..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 34555666677777777777777777766443 5667777777788888888888888887776443 566777777888
Q ss_pred HhcCcHHHHHHHHHHHHHcC------CCchhhHHHHHH
Q 047359 371 FKDGRMEEAVRIFDYMKELK------VVSSSSFVIVVS 402 (440)
Q Consensus 371 ~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~l~~ 402 (440)
...|++++|...|+++.+.. +.+..++..+..
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~ 120 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 120 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHH
Confidence 88888888888888877766 445444444443
No 150
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.78 E-value=2.3e-07 Score=66.22 Aligned_cols=96 Identities=19% Similarity=0.057 Sum_probs=60.3
Q ss_pred hhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHH
Q 047359 326 FCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLC 405 (440)
Q Consensus 326 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 405 (440)
..+..+...+...|++++|...+++..+.... +...+..+...+...|++++|...++++.+..+.++..+..+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 34455555666666666666666666654322 45556666666666666666666666666666556666666666666
Q ss_pred hcccHHHHHHHHHHHHH
Q 047359 406 HLKELRKAMKNHDEMLK 422 (440)
Q Consensus 406 ~~g~~~~a~~~~~~m~~ 422 (440)
..|++++|...+++..+
T Consensus 84 ~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HTTCHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 66666666666666665
No 151
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.78 E-value=1.3e-07 Score=70.48 Aligned_cols=104 Identities=13% Similarity=0.055 Sum_probs=76.9
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHH
Q 047359 291 MELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGL 370 (440)
Q Consensus 291 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 370 (440)
..+..+...+...|++++|...|+......+. +...|..+..+|...|++++|...|++..+..+. +...+..+..+|
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHH
Confidence 34555666677778888888888887776543 6667777777888888888888888888876543 566777788888
Q ss_pred HhcCcHHHHHHHHHHHHHcCCCchhh
Q 047359 371 FKDGRMEEAVRIFDYMKELKVVSSSS 396 (440)
Q Consensus 371 ~~~g~~~~a~~~~~~~~~~~~~~~~~ 396 (440)
...|++++|.+.|+++.+..|.++..
T Consensus 97 ~~~g~~~~A~~~~~~al~~~p~~~~~ 122 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALAAAQPAH 122 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTCGGG
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCcch
Confidence 88888888888888887776654443
No 152
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.75 E-value=1.5e-07 Score=73.10 Aligned_cols=119 Identities=12% Similarity=0.155 Sum_probs=68.5
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHH-HHhcCcH--HH
Q 047359 302 GKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDG-LFKDGRM--EE 378 (440)
Q Consensus 302 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~--~~ 378 (440)
..|++++|...+++.....+. +...+..+...|...|++++|...+++..+.... +...+..+..+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHCCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchHH
Confidence 345566666666665554332 4455566666666666666666666666654332 44555555555 5566665 66
Q ss_pred HHHHHHHHHHcCCCchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Q 047359 379 AVRIFDYMKELKVVSSSSFVIVVSRLCHLKELRKAMKNHDEMLK 422 (440)
Q Consensus 379 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 422 (440)
|...++++.+.+|.++..+..+...+...|++++|...++++.+
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 66666666666555566666666666666666666666666665
No 153
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.75 E-value=1.3e-07 Score=66.97 Aligned_cols=99 Identities=13% Similarity=0.039 Sum_probs=79.8
Q ss_pred chhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCC--chhhHHHHH
Q 047359 324 DSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVV--SSSSFVIVV 401 (440)
Q Consensus 324 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~ 401 (440)
+...+..+...+...|++++|...+++..+.... +...+..+...+...|++++|.+.++++.+..+. +...+..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 4456667777788888888888888888776433 5667778888888888888888888888888887 788888888
Q ss_pred HHHHhc-ccHHHHHHHHHHHHHC
Q 047359 402 SRLCHL-KELRKAMKNHDEMLKM 423 (440)
Q Consensus 402 ~~~~~~-g~~~~a~~~~~~m~~~ 423 (440)
.++... |++++|.+.+++..+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHhCCHHHHHHHHHHHhhc
Confidence 888888 8888888888888773
No 154
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.75 E-value=2.2e-07 Score=73.89 Aligned_cols=154 Identities=9% Similarity=-0.063 Sum_probs=68.5
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhc----CC-CCchhhhHHHHHHHHcCCcH
Q 047359 267 KEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDK----GL-LLDSFCCSSLMEYYCSNRQI 341 (440)
Q Consensus 267 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~ 341 (440)
..|++++|.++++.+.. ........+..+...+...|++++|...+++.... +. .....++..+...|...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 34555555553333322 11123344455555555555555555555554431 11 11223444455555555555
Q ss_pred HHHHHHHHHHHhc----cCCc--CHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcC----CC--chhhHHHHHHHHHhccc
Q 047359 342 DKAIALHIKIEKL----KGSL--DVATYDVLLDGLFKDGRMEEAVRIFDYMKELK----VV--SSSSFVIVVSRLCHLKE 409 (440)
Q Consensus 342 ~~a~~~~~~~~~~----~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~--~~~~~~~l~~~~~~~g~ 409 (440)
++|.+.+++..+. +..| ....+..+...+...|++++|...+++..+.. .. ...++..+...+...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 5555555554432 1011 12334455555555555555555555544221 11 11233445555555555
Q ss_pred HHHHHHHHHHHH
Q 047359 410 LRKAMKNHDEML 421 (440)
Q Consensus 410 ~~~a~~~~~~m~ 421 (440)
+++|...+++..
T Consensus 163 ~~~A~~~~~~al 174 (203)
T 3gw4_A 163 LLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555544
No 155
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.75 E-value=4.5e-07 Score=64.72 Aligned_cols=111 Identities=16% Similarity=0.021 Sum_probs=80.4
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHH
Q 047359 291 MELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGL 370 (440)
Q Consensus 291 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 370 (440)
..+..+...+...|++++|...+++.....+. +...+..+...+...|++++|...+++..+.... +...+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 44556666677777888888887777765433 5666777777788888888888888888776433 566777788888
Q ss_pred HhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHH
Q 047359 371 FKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSR 403 (440)
Q Consensus 371 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 403 (440)
...|++++|.+.+++..+.++.++..+..+...
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 888888888888888888777766665555443
No 156
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.75 E-value=1.3e-07 Score=72.51 Aligned_cols=108 Identities=12% Similarity=0.035 Sum_probs=88.6
Q ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHH
Q 047359 289 CAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLD 368 (440)
Q Consensus 289 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 368 (440)
+...+..+...+...|++++|...|++..+..+. +...|..+..+|...|++++|+..+++.++.... +...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 4556777888888899999999999998887544 6778888888899999999999999998887544 6778888888
Q ss_pred HHHhcCcHHHHHHHHHHHHHcCCCchhhHH
Q 047359 369 GLFKDGRMEEAVRIFDYMKELKVVSSSSFV 398 (440)
Q Consensus 369 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 398 (440)
+|...|++++|.+.|+++.+..+.+...+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 117 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAM 117 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHH
Confidence 999999999999999999888877655443
No 157
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.74 E-value=1.8e-07 Score=78.76 Aligned_cols=191 Identities=10% Similarity=-0.058 Sum_probs=102.1
Q ss_pred cchHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 047359 186 SGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVL 265 (440)
Q Consensus 186 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 265 (440)
..+..+...+.+.|++++|...|++.....+. +...|..+..+|.+.|++++|...+++..+.... +...+..+..++
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 82 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 34455566666666666666666666655433 5556666666677777777777777766665432 455666666777
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHH
Q 047359 266 CKEHQPEEVCGLLRDVVERGYIPCA-MELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKA 344 (440)
Q Consensus 266 ~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 344 (440)
...|++++|...++...+.+ |+. ..+...+....+ ..++.. +..........+......+.. + ..|+.++|
T Consensus 83 ~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~i~~~l~~-l-~~~~~~~A 154 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALR---IAKKKR-WNSIEERRIHQESELHSYLTR-L-IAAERERE 154 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHH---HHHHHH-HHHHHHTCCCCCCHHHHHHHH-H-HHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHH---HHHHHH-HHHHHHHHHhhhHHHHHHHHH-H-HHHHHHHH
Confidence 77777777777777665532 111 111111111111 111111 111222223333333333322 2 25778888
Q ss_pred HHHHHHHHhccCCcCH-HhHHHHHHHHHhc-CcHHHHHHHHHHHHH
Q 047359 345 IALHIKIEKLKGSLDV-ATYDVLLDGLFKD-GRMEEAVRIFDYMKE 388 (440)
Q Consensus 345 ~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~-g~~~~a~~~~~~~~~ 388 (440)
.+.+++..+. .|+. .....+...+.+. +.+++|.++|+++.+
T Consensus 155 ~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 155 LEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 8877776664 3333 3333343344444 667788888887754
No 158
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.74 E-value=2.2e-07 Score=68.06 Aligned_cols=104 Identities=13% Similarity=0.007 Sum_probs=92.3
Q ss_pred CchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHH
Q 047359 323 LDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVS 402 (440)
Q Consensus 323 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 402 (440)
.+...+..+...+...|++++|...+++..+.... +...+..+...+...|++++|.+.++++.+..+.+...+..+..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 35667888888999999999999999999986443 67889999999999999999999999999998888999999999
Q ss_pred HHHhcccHHHHHHHHHHHHHCCCCCCH
Q 047359 403 RLCHLKELRKAMKNHDEMLKMGHKPDE 429 (440)
Q Consensus 403 ~~~~~g~~~~a~~~~~~m~~~~~~p~~ 429 (440)
++.+.|++++|.+.+++..+ ..|+.
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~--~~p~~ 117 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALD--LDSSC 117 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HCGGG
T ss_pred HHHHHhhHHHHHHHHHHHHH--hCCCc
Confidence 99999999999999999987 34544
No 159
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.74 E-value=2.9e-07 Score=73.02 Aligned_cols=97 Identities=23% Similarity=0.122 Sum_probs=75.0
Q ss_pred hhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHH
Q 047359 326 FCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLC 405 (440)
Q Consensus 326 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 405 (440)
..+..+..+|...|++++|+..+++..+.... +...+..+..+|...|++++|.+.|+++.+..|.+..++..+..++.
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 167 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN 167 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Confidence 56777888889999999999999999886443 67788889999999999999999999999998888889999999888
Q ss_pred hcccHHHHH-HHHHHHHHC
Q 047359 406 HLKELRKAM-KNHDEMLKM 423 (440)
Q Consensus 406 ~~g~~~~a~-~~~~~m~~~ 423 (440)
..|+.+++. ..+..|...
T Consensus 168 ~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 168 KLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HHHHHHC------------
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 888887777 556666553
No 160
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.71 E-value=4.2e-07 Score=67.08 Aligned_cols=99 Identities=17% Similarity=0.107 Sum_probs=50.5
Q ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHH
Q 047359 289 CAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLD 368 (440)
Q Consensus 289 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 368 (440)
+...+..+...+...|++++|...++......+. +...+..+..++...|++++|...+++..+.... +...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHHH
Confidence 3344455555555555555555555555544322 3444555555555555555555555555544322 3445555555
Q ss_pred HHHhcCcHHHHHHHHHHHHHc
Q 047359 369 GLFKDGRMEEAVRIFDYMKEL 389 (440)
Q Consensus 369 ~~~~~g~~~~a~~~~~~~~~~ 389 (440)
++...|++++|...|+++.+.
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHH
Confidence 555555555555555555444
No 161
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.70 E-value=4.1e-07 Score=69.62 Aligned_cols=101 Identities=13% Similarity=-0.047 Sum_probs=72.0
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHH
Q 047359 254 RDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLME 333 (440)
Q Consensus 254 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 333 (440)
+...+..+...+...|++++|...|+...+.. +.+...+..+..++...|++++|+..+++..+..+. +...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 34556667777777778888888777777653 335666777777777778888888877777776543 5667777777
Q ss_pred HHHcCCcHHHHHHHHHHHHhccC
Q 047359 334 YYCSNRQIDKAIALHIKIEKLKG 356 (440)
Q Consensus 334 ~~~~~~~~~~a~~~~~~~~~~~~ 356 (440)
+|...|++++|.+.|++..+...
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p 110 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEG 110 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHS
T ss_pred HHHHccCHHHHHHHHHHHHHhCC
Confidence 77777888888887777776543
No 162
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.69 E-value=5.2e-07 Score=66.57 Aligned_cols=98 Identities=12% Similarity=-0.040 Sum_probs=60.2
Q ss_pred chhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHH
Q 047359 324 DSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSR 403 (440)
Q Consensus 324 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 403 (440)
+...+..+...+...|++++|...|++..+.... +...|..+..++...|++++|...++++.+.++.++..+..+..+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 3445555566666666666666666666654332 455566666666666666666666666666665566666666666
Q ss_pred HHhcccHHHHHHHHHHHHH
Q 047359 404 LCHLKELRKAMKNHDEMLK 422 (440)
Q Consensus 404 ~~~~g~~~~a~~~~~~m~~ 422 (440)
+...|++++|...|++..+
T Consensus 87 ~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 6666666666666666554
No 163
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.68 E-value=5.7e-07 Score=65.54 Aligned_cols=103 Identities=14% Similarity=0.066 Sum_probs=91.1
Q ss_pred chhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHH
Q 047359 324 DSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSR 403 (440)
Q Consensus 324 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 403 (440)
+...+..+...+...|++++|...+++..+.... +...+..+...+...|++++|.+.+++..+..+.++..+..+...
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 4567778888999999999999999999986443 678889999999999999999999999999988888999999999
Q ss_pred HHhcccHHHHHHHHHHHHHCCCCCCH
Q 047359 404 LCHLKELRKAMKNHDEMLKMGHKPDE 429 (440)
Q Consensus 404 ~~~~g~~~~a~~~~~~m~~~~~~p~~ 429 (440)
+...|++++|...+++..+. .|+.
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~--~p~~ 113 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALEL--DPDN 113 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--STTC
T ss_pred HHHhCCHHHHHHHHHHHHhc--Cccc
Confidence 99999999999999999884 4543
No 164
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.66 E-value=8.3e-07 Score=66.38 Aligned_cols=94 Identities=11% Similarity=-0.088 Sum_probs=44.5
Q ss_pred hhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcC----HHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHH
Q 047359 327 CCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLD----VATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVS 402 (440)
Q Consensus 327 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 402 (440)
.+..+...+...|++++|.+.|++..+.. |+ ...+..+..+|...|++++|...+++..+..+.++..+..+..
T Consensus 30 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 30 QLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 33344444444444444444444444421 22 3344444444555555555555555554444444444445555
Q ss_pred HHHhcccHHHHHHHHHHHHH
Q 047359 403 RLCHLKELRKAMKNHDEMLK 422 (440)
Q Consensus 403 ~~~~~g~~~~a~~~~~~m~~ 422 (440)
++...|++++|...+++..+
T Consensus 108 ~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555555444
No 165
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.65 E-value=3.6e-07 Score=69.75 Aligned_cols=61 Identities=11% Similarity=0.083 Sum_probs=30.7
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Q 047359 362 TYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLKELRKAMKNHDEMLK 422 (440)
Q Consensus 362 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 422 (440)
.|..+..+|.+.|++++|+..++++.+.+|.++.+|..+..++...|++++|...|++.++
T Consensus 65 ~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 65 LYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 4444444455555555555555555554444444555555555555555555555555444
No 166
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.65 E-value=8.7e-07 Score=76.61 Aligned_cols=96 Identities=13% Similarity=-0.045 Sum_probs=72.0
Q ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHH
Q 047359 290 AMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDG 369 (440)
Q Consensus 290 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 369 (440)
...+..+..++.+.|++++|...+++..+..+. +...+..+..+|...|++++|+..|+++.+..+. +...+..+..+
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~ 273 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVC 273 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence 356777777888888888888888888776544 6677778888888888888888888888876443 56677788888
Q ss_pred HHhcCcHHHH-HHHHHHHH
Q 047359 370 LFKDGRMEEA-VRIFDYMK 387 (440)
Q Consensus 370 ~~~~g~~~~a-~~~~~~~~ 387 (440)
+.+.|+.++| ...++.|.
T Consensus 274 ~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 274 QQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8888888877 34555554
No 167
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.65 E-value=4.8e-07 Score=65.96 Aligned_cols=99 Identities=10% Similarity=0.116 Sum_probs=50.1
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCC--cC----HHhHHH
Q 047359 292 ELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGS--LD----VATYDV 365 (440)
Q Consensus 292 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--p~----~~~~~~ 365 (440)
.+..+...+...|++++|...+++.....+. +...+..+...+...|++++|...+++..+.... ++ ..++..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 3444555555555555555555555544322 3444555555555555555555555555543221 11 344445
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHHcCC
Q 047359 366 LLDGLFKDGRMEEAVRIFDYMKELKV 391 (440)
Q Consensus 366 l~~~~~~~g~~~~a~~~~~~~~~~~~ 391 (440)
+...+...|++++|.+.|+++.+..+
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~~ 110 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEHR 110 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 55555555555555555555555433
No 168
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.63 E-value=1.6e-06 Score=64.74 Aligned_cols=115 Identities=15% Similarity=0.012 Sum_probs=85.7
Q ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCC--chhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHH
Q 047359 289 CAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLL--DSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVL 366 (440)
Q Consensus 289 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 366 (440)
+...+..+...+...|++++|...+++..+..... ....+..+...|...|++++|...+++..+.... +...+..+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~ 105 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALYRR 105 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHHHH
Confidence 44556667777778888888888888887654321 0566777788888888888888888888876433 56777888
Q ss_pred HHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHH
Q 047359 367 LDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRL 404 (440)
Q Consensus 367 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 404 (440)
..++...|++++|...|++..+..+.+...+..+....
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 88888899999999999988888777766666555443
No 169
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.61 E-value=1.1e-06 Score=63.97 Aligned_cols=97 Identities=15% Similarity=0.074 Sum_probs=49.4
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhcCCCCch---hhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcC---HHhHHHHHHH
Q 047359 296 FVASQCGKGKWKEVEELLSAVLDKGLLLDS---FCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLD---VATYDVLLDG 369 (440)
Q Consensus 296 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~---~~~~~~l~~~ 369 (440)
+...+...|++++|...++.+.+..+. +. ..+..+..++...|++++|...++++.+..+. + ...+..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHH
Confidence 344455555666666666555554322 12 24444555555555555555555555554322 1 3344455555
Q ss_pred HHhcCcHHHHHHHHHHHHHcCCCch
Q 047359 370 LFKDGRMEEAVRIFDYMKELKVVSS 394 (440)
Q Consensus 370 ~~~~g~~~~a~~~~~~~~~~~~~~~ 394 (440)
+...|++++|...|+++.+..|.++
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~p~~~ 110 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQYPGSD 110 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTSH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCCh
Confidence 5555555555555555555544433
No 170
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.59 E-value=8.6e-08 Score=68.68 Aligned_cols=85 Identities=11% Similarity=-0.089 Sum_probs=43.5
Q ss_pred CCcHHHHHHHHHHHHhccC--CcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcccHHHHHH
Q 047359 338 NRQIDKAIALHIKIEKLKG--SLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLKELRKAMK 415 (440)
Q Consensus 338 ~~~~~~a~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 415 (440)
.|++++|+..|++..+.+. +.+...+..+..+|...|++++|+..|+++.+..|.++.++..+..++...|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 3455555555555554321 11234455555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHH
Q 047359 416 NHDEMLK 422 (440)
Q Consensus 416 ~~~~m~~ 422 (440)
.+++.++
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555554
No 171
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.56 E-value=1.3e-07 Score=74.96 Aligned_cols=104 Identities=11% Similarity=0.007 Sum_probs=82.2
Q ss_pred hhhHHHHHHHHcCCcHHHHHHHHHHHHhccCC-c--------------CHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 047359 326 FCCSSLMEYYCSNRQIDKAIALHIKIEKLKGS-L--------------DVATYDVLLDGLFKDGRMEEAVRIFDYMKELK 390 (440)
Q Consensus 326 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-p--------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 390 (440)
..+..+...+...|++++|...|++..+.... | ....+..+..+|.+.|++++|+..++++.+..
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 34455556666677777777777766654222 1 13678889999999999999999999999998
Q ss_pred CCchhhHHHHHHHHHhcccHHHHHHHHHHHHHCCCCCCHHH
Q 047359 391 VVSSSSFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDEAT 431 (440)
Q Consensus 391 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t 431 (440)
+.+..++..+..++...|++++|...|++..+ +.|+...
T Consensus 119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~ 157 (198)
T 2fbn_A 119 KNNVKALYKLGVANMYFGFLEEAKENLYKAAS--LNPNNLD 157 (198)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCHH
T ss_pred cccHHHHHHHHHHHHHcccHHHHHHHHHHHHH--HCCCcHH
Confidence 88999999999999999999999999999988 4565543
No 172
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.56 E-value=3.8e-07 Score=82.80 Aligned_cols=119 Identities=9% Similarity=0.101 Sum_probs=86.1
Q ss_pred HHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHH
Q 047359 298 ASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRME 377 (440)
Q Consensus 298 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 377 (440)
..+.+.|++++|.+.+++..+..+. +...+..+..+|.+.|++++|++.+++..+.... +...+..+..+|...|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHH
Confidence 3455677888888888887776443 5677777888888888888888888888876433 5667778888888888888
Q ss_pred HHHHHHHHHHHcCCCchhhHHHHHHH--HHhcccHHHHHHHHH
Q 047359 378 EAVRIFDYMKELKVVSSSSFVIVVSR--LCHLKELRKAMKNHD 418 (440)
Q Consensus 378 ~a~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 418 (440)
+|.+.|+++.+..+.+...+..+..+ +.+.|++++|++.++
T Consensus 92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 88888888888777766666666666 777788888888877
No 173
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.56 E-value=9e-07 Score=63.62 Aligned_cols=99 Identities=15% Similarity=-0.058 Sum_probs=71.9
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHH
Q 047359 292 ELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLF 371 (440)
Q Consensus 292 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 371 (440)
.+..+...+.+.|++++|...+++..+..+. +...|..+..++...|++++|+..+++..+..+. +...+..+..++.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 3445566677778888888888888776544 6667777777888888888888888888876544 5667777888888
Q ss_pred hcCcHHHHHHHHHHHHHcCCC
Q 047359 372 KDGRMEEAVRIFDYMKELKVV 392 (440)
Q Consensus 372 ~~g~~~~a~~~~~~~~~~~~~ 392 (440)
..|++++|...++++.+..|.
T Consensus 97 ~~g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHHHHC----
T ss_pred HcCCHHHHHHHHHHHHHhCcC
Confidence 888888888888888776554
No 174
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.55 E-value=1.4e-06 Score=63.48 Aligned_cols=95 Identities=11% Similarity=0.111 Sum_probs=53.6
Q ss_pred hhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCc-------hhhHHH
Q 047359 327 CCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVS-------SSSFVI 399 (440)
Q Consensus 327 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-------~~~~~~ 399 (440)
.+..+...+...|++++|...+++..+.... +...+..+...+...|++++|...++++.+..+.+ ..++..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 3444555555666666666666665554322 44555555556666666666666666555544332 445555
Q ss_pred HHHHHHhcccHHHHHHHHHHHHH
Q 047359 400 VVSRLCHLKELRKAMKNHDEMLK 422 (440)
Q Consensus 400 l~~~~~~~g~~~~a~~~~~~m~~ 422 (440)
+..++...|++++|.+.++++.+
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHH
Confidence 55666666666666666666555
No 175
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.55 E-value=8.5e-06 Score=73.29 Aligned_cols=57 Identities=9% Similarity=0.025 Sum_probs=30.0
Q ss_pred HHHHHhhcCcHHHHHHHHHHHHhcCCCCCH----------------HhHHHHHHHHhhhccHHHHHHHHHHHH
Q 047359 191 VIQKLSDMGKTYAAEMIFKRACDEKIELQD----------------DTCGCMLKALSKEGRVKEAIQIYHLIS 247 (440)
Q Consensus 191 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~ 247 (440)
-...+.+.|++++|.+.|..+.+....... ..+..+...|.+.|++++|.+.+..+.
T Consensus 10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~ 82 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHST 82 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 345566667777777777766654332111 123444555555555555555555443
No 176
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.54 E-value=4.5e-06 Score=61.88 Aligned_cols=106 Identities=16% Similarity=0.098 Sum_probs=73.9
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHhccCCc------C-----HHhHHHHHHHHHhcCcHHHHHHHHHHHHHc-------CC
Q 047359 330 SLMEYYCSNRQIDKAIALHIKIEKLKGSL------D-----VATYDVLLDGLFKDGRMEEAVRIFDYMKEL-------KV 391 (440)
Q Consensus 330 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p------~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~ 391 (440)
.....+...|++++|+..|++.++..+.. + ...|..+..++.+.|++++|+..+++..+. +|
T Consensus 16 ~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~p 95 (159)
T 2hr2_A 16 SDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQ 95 (159)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCC
Confidence 33444555566666666666665543220 1 237888888888888888888888888888 87
Q ss_pred CchhhH----HHHHHHHHhcccHHHHHHHHHHHHH-----CCCCCCHHHHHHH
Q 047359 392 VSSSSF----VIVVSRLCHLKELRKAMKNHDEMLK-----MGHKPDEATYKQV 435 (440)
Q Consensus 392 ~~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~t~~~l 435 (440)
.+...| +....++...|++++|+..|++.++ .|+.+........
T Consensus 96 d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~ 148 (159)
T 2hr2_A 96 DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEV 148 (159)
T ss_dssp THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHH
T ss_pred chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 777888 8888888889999999998888875 4555554444333
No 177
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.54 E-value=5.2e-06 Score=60.29 Aligned_cols=92 Identities=11% Similarity=0.028 Sum_probs=60.8
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHhccCCcCH---HhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCc---hhhHHHHHHH
Q 047359 330 SLMEYYCSNRQIDKAIALHIKIEKLKGSLDV---ATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVS---SSSFVIVVSR 403 (440)
Q Consensus 330 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~ 403 (440)
.+...+...|++++|...|+++.+..+. +. ..+..+..++.+.|++++|...|+++.+..|.+ +.++..+..+
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 3455566677777777777777664332 22 355666667777777777777777777666665 5566667777
Q ss_pred HHhcccHHHHHHHHHHHHH
Q 047359 404 LCHLKELRKAMKNHDEMLK 422 (440)
Q Consensus 404 ~~~~g~~~~a~~~~~~m~~ 422 (440)
+...|++++|...|+++.+
T Consensus 86 ~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 7777777777777777666
No 178
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.53 E-value=1.7e-06 Score=61.02 Aligned_cols=102 Identities=13% Similarity=-0.025 Sum_probs=69.8
Q ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCC-cCHHhHHHHHH
Q 047359 290 AMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGS-LDVATYDVLLD 368 (440)
Q Consensus 290 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~ 368 (440)
...+..+...+...|++++|...+++..+.... +...+..+...+...|++++|.+.+++..+.... .+...+..+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 445556666677777777777777777665433 5556667777777777777777777777764221 03566777777
Q ss_pred HHHhc-CcHHHHHHHHHHHHHcCCC
Q 047359 369 GLFKD-GRMEEAVRIFDYMKELKVV 392 (440)
Q Consensus 369 ~~~~~-g~~~~a~~~~~~~~~~~~~ 392 (440)
++.+. |++++|.+.++++....+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccC
Confidence 77777 8888888888777776655
No 179
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.51 E-value=2.4e-06 Score=77.27 Aligned_cols=129 Identities=12% Similarity=-0.007 Sum_probs=88.6
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCC--------------chhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCC
Q 047359 292 ELSRFVASQCGKGKWKEVEELLSAVLDKGLLL--------------DSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGS 357 (440)
Q Consensus 292 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 357 (440)
.+..+...+.+.|++++|...|++..+..... ....|..+..+|.+.|++++|+..++++++....
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 349 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA 349 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Confidence 34444555555555555555555555432221 1467777888888888888888888888876544
Q ss_pred cCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcccHHHHHH-HHHHHH
Q 047359 358 LDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLKELRKAMK-NHDEML 421 (440)
Q Consensus 358 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~-~~~~m~ 421 (440)
+...|..+..+|...|++++|+..|+++.+..|.+..++..+..++.+.|+.+++.. .+++|.
T Consensus 350 -~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 350 -NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred -cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888888888888888888888888888887777888888888888888877764 444443
No 180
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.49 E-value=2.4e-06 Score=61.97 Aligned_cols=99 Identities=7% Similarity=0.044 Sum_probs=65.8
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCC--cC----HHhHHH
Q 047359 292 ELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGS--LD----VATYDV 365 (440)
Q Consensus 292 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--p~----~~~~~~ 365 (440)
.+..+...+.+.|++++|+..|++..+..+. +...|..+..+|...|++++|++.+++.++.... ++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 3455666667777777777777777665443 5666777777777777777777777777654321 11 235666
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHHcCC
Q 047359 366 LLDGLFKDGRMEEAVRIFDYMKELKV 391 (440)
Q Consensus 366 l~~~~~~~g~~~~a~~~~~~~~~~~~ 391 (440)
+..++...|++++|++.|++..+..+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~~~ 114 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSEFR 114 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 77777778888888888887776543
No 181
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.47 E-value=1.9e-06 Score=65.41 Aligned_cols=131 Identities=12% Similarity=-0.000 Sum_probs=79.8
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHhcCCC-Cc----hhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCC----c-CHH
Q 047359 292 ELSRFVASQCGKGKWKEVEELLSAVLDKGLL-LD----SFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGS----L-DVA 361 (440)
Q Consensus 292 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----p-~~~ 361 (440)
++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|.+.+++..+.... + ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3444444555555555555555554432110 01 134555666677777777777777766543111 0 134
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHHcCC----C--chhhHHHHHHHHHhcccHHHHHHHHHHHHH
Q 047359 362 TYDVLLDGLFKDGRMEEAVRIFDYMKELKV----V--SSSSFVIVVSRLCHLKELRKAMKNHDEMLK 422 (440)
Q Consensus 362 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 422 (440)
.+..+...+...|++++|.+.+++..+... . ...++..+...+...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 566677777888888888888877654321 1 245677788888888888888888888765
No 182
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.47 E-value=2.3e-06 Score=74.78 Aligned_cols=122 Identities=10% Similarity=0.052 Sum_probs=91.3
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHh----------------cCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccC
Q 047359 293 LSRFVASQCGKGKWKEVEELLSAVLD----------------KGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKG 356 (440)
Q Consensus 293 ~~~l~~~~~~~~~~~~a~~~~~~~~~----------------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 356 (440)
+..+...+.+.|++++|...|++..+ .. ..+...|..+..+|.+.|++++|++.+++.++...
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~-~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 304 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQ-PVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP 304 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHH-HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc
Confidence 33344445555555555555555543 11 11456778888889999999999999999988644
Q ss_pred CcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcccHHHHHHH
Q 047359 357 SLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLKELRKAMKN 416 (440)
Q Consensus 357 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 416 (440)
. +...|..+..+|...|++++|.+.|+++.+..|.+...+..+..++...++.+++.+.
T Consensus 305 ~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 305 S-NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred h-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 6778888999999999999999999999999888888888888888888887777553
No 183
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.46 E-value=1.4e-05 Score=71.78 Aligned_cols=199 Identities=8% Similarity=-0.051 Sum_probs=125.9
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhcCCCCcccc--------------cchHHHHHHHhhcCcHHHHHHHHHHHHhcCCC-C
Q 047359 154 ILDGARRYEKTEVSDRIVGLMVEKKLLPKHFL--------------SGNDYVIQKLSDMGKTYAAEMIFKRACDEKIE-L 218 (440)
Q Consensus 154 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~ 218 (440)
-.+.+.+.|++++|.+.+..+.+......... ..+..+...|...|++++|.+.+..+.+.... +
T Consensus 10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 35667889999999999999998754332101 12567899999999999999999987653211 1
Q ss_pred CHH----hHHHHHHHHhhhccHHHHHHHHHHHHHc----CCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-
Q 047359 219 QDD----TCGCMLKALSKEGRVKEAIQIYHLISER----GITV-RDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIP- 288 (440)
Q Consensus 219 ~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~- 288 (440)
+.. +.+.+-..+...|+++.|..+++..... +..+ -..++..+...+...|++++|..+++.+...-...
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 221 2333334445568888888888776542 2222 23456677777888888888888887765431111
Q ss_pred ----ChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcC--C-CC-c--hhhhHHHHHHHHcCCcHHHHHHHHHHHH
Q 047359 289 ----CAMELSRFVASQCGKGKWKEVEELLSAVLDKG--L-LL-D--SFCCSSLMEYYCSNRQIDKAIALHIKIE 352 (440)
Q Consensus 289 ----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~-~~-~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 352 (440)
....+..++..|...|++++|..++++..... . .| . ...+..+...+...|++++|...|.+..
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 12356666677777777777777777665321 1 11 1 1234445555666677777766665554
No 184
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.45 E-value=2.4e-06 Score=65.09 Aligned_cols=76 Identities=7% Similarity=-0.008 Sum_probs=61.3
Q ss_pred chhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCch-hhHHHH
Q 047359 324 DSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSS-SSFVIV 400 (440)
Q Consensus 324 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~l 400 (440)
+...|..+..+|.+.|++++|+..+++.++..+. +...|..+..+|...|++++|...|++..+..|.++ .+...+
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l 138 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREM 138 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 3457778888888999999999999999887544 677888899999999999999999999998887766 434333
No 185
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.43 E-value=7.7e-07 Score=65.81 Aligned_cols=98 Identities=10% Similarity=0.084 Sum_probs=67.5
Q ss_pred cCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCc----------HHHHHHHHHHHHHcCCCchhhHHHHHHHHHh
Q 047359 337 SNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGR----------MEEAVRIFDYMKELKVVSSSSFVIVVSRLCH 406 (440)
Q Consensus 337 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 406 (440)
+.+.+++|.+.+++..+..+. +...|..+..++...++ +++|+..|+++.+.+|....+|+.+..+|..
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 344566666666666665443 55566666666665554 4588888888888887777788888888876
Q ss_pred cc-----------cHHHHHHHHHHHHHCCCCCCHHHHHHHhh
Q 047359 407 LK-----------ELRKAMKNHDEMLKMGHKPDEATYKQVIS 437 (440)
Q Consensus 407 ~g-----------~~~~a~~~~~~m~~~~~~p~~~t~~~ll~ 437 (440)
.| ++++|++.|++.++ +.|+...|...+.
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~ 132 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLE 132 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 64 78888888888887 6777777665543
No 186
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.40 E-value=1.3e-06 Score=75.64 Aligned_cols=148 Identities=12% Similarity=-0.011 Sum_probs=82.1
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHH
Q 047359 255 DSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEY 334 (440)
Q Consensus 255 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 334 (440)
...+..+...+.+.|++++|...|+...... |+... +...++.+++...+ ....|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l----------~~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAV----------KNPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHH----------HTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHH----------HHHHHHHHHHH
Confidence 3445566666777777788877777776642 33221 22233333333222 12367788889
Q ss_pred HHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHH-HhcccHHHH
Q 047359 335 YCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRL-CHLKELRKA 413 (440)
Q Consensus 335 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~a 413 (440)
|.+.|++++|+..+++.++.... +...|..+..+|...|++++|...|+++.+..|.+..++..+.... ...+..+++
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999986543 6788999999999999999999999999988888777777777663 355677888
Q ss_pred HHHHHHHHH
Q 047359 414 MKNHDEMLK 422 (440)
Q Consensus 414 ~~~~~~m~~ 422 (440)
...|++|..
T Consensus 319 ~~~~~~~l~ 327 (338)
T 2if4_A 319 KEMYKGIFK 327 (338)
T ss_dssp ---------
T ss_pred HHHHHHhhC
Confidence 889998876
No 187
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.40 E-value=2.2e-05 Score=72.61 Aligned_cols=173 Identities=9% Similarity=-0.045 Sum_probs=120.3
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC----------hHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCC-
Q 047359 236 VKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQ----------PEEVCGLLRDVVERGYIPCAMELSRFVASQCGKG- 304 (440)
Q Consensus 236 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~- 304 (440)
.++|++.++.+.+.++. +...|+.--.++...|+ ++++++.++.+.+.+ +-+..+|.--...+.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence 35667777777665543 44455554444444444 677777777777654 335556666666666667
Q ss_pred -CHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCC-cHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhc---------
Q 047359 305 -KWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNR-QIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKD--------- 373 (440)
Q Consensus 305 -~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--------- 373 (440)
+++++.+.++++.+..+. +...|+.-..++...| .++++++.++++++..+. |...|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccccccccc
Confidence 668888888888877655 6777777777777777 778888888888776555 667777666665552
Q ss_pred -----CcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcccHHH
Q 047359 374 -----GRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLKELRK 412 (440)
Q Consensus 374 -----g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 412 (440)
+.++++.+.++++...+|.+..+|+.+...+.+.++.++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 567889999999998888888888888888877776443
No 188
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.40 E-value=6.5e-07 Score=64.00 Aligned_cols=92 Identities=15% Similarity=0.016 Sum_probs=61.0
Q ss_pred CCCHHHHHHHHHHHHhcC--CCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHH
Q 047359 303 KGKWKEVEELLSAVLDKG--LLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAV 380 (440)
Q Consensus 303 ~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 380 (440)
.|++++|+..|++..+.+ -+.+...+..+..+|...|++++|+..+++..+..+. +...+..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence 466667777777776653 1124456667777777778888888888777776544 5667777777777888888888
Q ss_pred HHHHHHHHcCCCchh
Q 047359 381 RIFDYMKELKVVSSS 395 (440)
Q Consensus 381 ~~~~~~~~~~~~~~~ 395 (440)
..+++..+..+.++.
T Consensus 82 ~~~~~al~~~p~~~~ 96 (117)
T 3k9i_A 82 ELLLKIIAETSDDET 96 (117)
T ss_dssp HHHHHHHHHHCCCHH
T ss_pred HHHHHHHHhCCCcHH
Confidence 888877777666443
No 189
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.38 E-value=2.4e-05 Score=72.44 Aligned_cols=158 Identities=11% Similarity=-0.010 Sum_probs=130.2
Q ss_pred CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCC----------HHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcC
Q 047359 269 HQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGK----------WKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSN 338 (440)
Q Consensus 269 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 338 (440)
...++|++.++.+...+ +-+...|+.--..+...|+ ++++.+.++.+.+..++ +..+|+.-..++.+.
T Consensus 43 ~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 34568899999998865 3345556665555555566 89999999999998776 888898888888899
Q ss_pred C--cHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcC-cHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhc--------
Q 047359 339 R--QIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDG-RMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHL-------- 407 (440)
Q Consensus 339 ~--~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------- 407 (440)
+ +++++++.++++.+...+ +...|+.-...+.+.| .++++.+.++++.+.++.+..+|+.....+.+.
T Consensus 121 ~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 121 PEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred ccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccc
Confidence 9 779999999999998766 8889998888888889 899999999999999999999999888887763
Q ss_pred ------ccHHHHHHHHHHHHHCCCCCCHHH
Q 047359 408 ------KELRKAMKNHDEMLKMGHKPDEAT 431 (440)
Q Consensus 408 ------g~~~~a~~~~~~m~~~~~~p~~~t 431 (440)
+.++++++.++++.. +.|+..+
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~--~~P~~~s 227 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFF--TDPNDQS 227 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHH--HCSSCSH
T ss_pred cccccHHHHHHHHHHHHHHHh--hCCCCcc
Confidence 678999999999988 4566543
No 190
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.31 E-value=1e-05 Score=61.33 Aligned_cols=98 Identities=17% Similarity=0.147 Sum_probs=58.8
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHhcCCC-----CchhhhHHHHHHHHcCCcHHHHHHHHHHHHhcc----CC-cCHH
Q 047359 292 ELSRFVASQCGKGKWKEVEELLSAVLDKGLL-----LDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLK----GS-LDVA 361 (440)
Q Consensus 292 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~-p~~~ 361 (440)
++..+...+...|++++|...+++..+.... .....+..+...+...|++++|.+.+++..+.. .. ....
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 3444555555556666666666555432100 013345566667777777777777777766431 11 1134
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHHc
Q 047359 362 TYDVLLDGLFKDGRMEEAVRIFDYMKEL 389 (440)
Q Consensus 362 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 389 (440)
.+..+...+...|++++|.+.+++..+.
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 5667777888888888888888877653
No 191
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.29 E-value=5.1e-06 Score=75.45 Aligned_cols=121 Identities=16% Similarity=0.045 Sum_probs=76.0
Q ss_pred HHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCC
Q 047359 226 MLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGK 305 (440)
Q Consensus 226 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 305 (440)
+...+.+.|++++|.+.|++..+.... +...+..+..++.+.|++++|...+++..+.. +.+...+..+..+|...|+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 344566777777777777777776433 46667777777777777777777777777653 3345566667777777777
Q ss_pred HHHHHHHHHHHHhcCCCCchhhhHHHHHH--HHcCCcHHHHHHHHH
Q 047359 306 WKEVEELLSAVLDKGLLLDSFCCSSLMEY--YCSNRQIDKAIALHI 349 (440)
Q Consensus 306 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 349 (440)
+++|.+.+++..+..+. +...+..+..+ +.+.|++++|++.++
T Consensus 90 ~~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 77777777777665432 33344444444 666677777777766
No 192
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.26 E-value=8.6e-06 Score=71.21 Aligned_cols=105 Identities=11% Similarity=0.040 Sum_probs=89.3
Q ss_pred hhhHHHHHHHHcCCcHHHHHHHHHHHHhcc--------------CC-cCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 047359 326 FCCSSLMEYYCSNRQIDKAIALHIKIEKLK--------------GS-LDVATYDVLLDGLFKDGRMEEAVRIFDYMKELK 390 (440)
Q Consensus 326 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------------~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 390 (440)
..+..+...+.+.|++++|++.|++.++.- .. .+...|..+..+|.+.|++++|++.++++.+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 346677788999999999999999988610 11 245688899999999999999999999999999
Q ss_pred CCchhhHHHHHHHHHhcccHHHHHHHHHHHHHCCCCCCHHHH
Q 047359 391 VVSSSSFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDEATY 432 (440)
Q Consensus 391 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~ 432 (440)
+.+..++..+..+|...|++++|+..|+++.+ +.|+....
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~--l~P~~~~~ 343 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQE--IAPEDKAI 343 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHH
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHH
Confidence 88999999999999999999999999999988 46765433
No 193
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.24 E-value=1.4e-05 Score=72.22 Aligned_cols=105 Identities=14% Similarity=0.061 Sum_probs=90.3
Q ss_pred chhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcC--------------HHhHHHHHHHHHhcCcHHHHHHHHHHHHHc
Q 047359 324 DSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLD--------------VATYDVLLDGLFKDGRMEEAVRIFDYMKEL 389 (440)
Q Consensus 324 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~--------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 389 (440)
....+..+...|.+.|++++|+..|++.++...... ...|..+..+|.+.|++++|+..++++.+.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 455677788899999999999999999998644321 578899999999999999999999999999
Q ss_pred CCCchhhHHHHHHHHHhcccHHHHHHHHHHHHHCCCCCCHH
Q 047359 390 KVVSSSSFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDEA 430 (440)
Q Consensus 390 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 430 (440)
.+.+..+|..+..+|...|++++|+..|+++++ +.|+..
T Consensus 347 ~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~--l~P~~~ 385 (457)
T 1kt0_A 347 DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE--VNPQNK 385 (457)
T ss_dssp STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TC----
T ss_pred CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCH
Confidence 998999999999999999999999999999998 567654
No 194
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.20 E-value=1.8e-06 Score=60.83 Aligned_cols=94 Identities=9% Similarity=-0.045 Sum_probs=66.4
Q ss_pred chhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCc------hhhH
Q 047359 324 DSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVS------SSSF 397 (440)
Q Consensus 324 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~ 397 (440)
+...+..+...+...|++++|.+.+++..+..+. +...+..+..++.+.|++++|++.++++.+..|.+ ...+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 4455666777777888888888888887776433 56677778888888888888888888888777665 5556
Q ss_pred HHHHHHHHhcccHHHHHHHHH
Q 047359 398 VIVVSRLCHLKELRKAMKNHD 418 (440)
Q Consensus 398 ~~l~~~~~~~g~~~~a~~~~~ 418 (440)
..+..++...|+.+.|...++
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHhHhhhHhHHH
Confidence 666666666666555554443
No 195
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.17 E-value=1.3e-05 Score=56.80 Aligned_cols=82 Identities=17% Similarity=0.135 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHH
Q 047359 308 EVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMK 387 (440)
Q Consensus 308 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 387 (440)
.|...+++..+..+. +...+..+...|...|++++|+..+++..+.... +...|..+..+|...|++++|...|++..
T Consensus 3 ~a~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 355666666665433 5566666777777777777777777777765433 45566677777777777777777777776
Q ss_pred HcCC
Q 047359 388 ELKV 391 (440)
Q Consensus 388 ~~~~ 391 (440)
+..+
T Consensus 81 ~~~~ 84 (115)
T 2kat_A 81 AAAQ 84 (115)
T ss_dssp HHHH
T ss_pred Hhcc
Confidence 6544
No 196
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.16 E-value=1.2e-05 Score=59.55 Aligned_cols=98 Identities=19% Similarity=0.179 Sum_probs=66.4
Q ss_pred HHHHcCCCHHHHHHHHHHHHhcCCCC-----------chhhhHHHHHHHHcCCcHHHHHHHHHHHHhc-------cCCcC
Q 047359 298 ASQCGKGKWKEVEELLSAVLDKGLLL-----------DSFCCSSLMEYYCSNRQIDKAIALHIKIEKL-------KGSLD 359 (440)
Q Consensus 298 ~~~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~p~ 359 (440)
..+.+.|++++|...|++..+..+.. +...|..+..++.+.|++++|+..+++.++. .+. +
T Consensus 19 ~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd-~ 97 (159)
T 2hr2_A 19 QRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQD-E 97 (159)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTST-H
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCc-h
Confidence 33444455555555555554432210 1237777888888888888888888888875 332 4
Q ss_pred HHhH----HHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhh
Q 047359 360 VATY----DVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSS 396 (440)
Q Consensus 360 ~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 396 (440)
...| .....++...|++++|+..|++..+..|.+...
T Consensus 98 ~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 98 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 5577 888889999999999999999988876554433
No 197
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.15 E-value=2.7e-05 Score=52.25 Aligned_cols=82 Identities=17% Similarity=0.166 Sum_probs=51.8
Q ss_pred hhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHH
Q 047359 325 SFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRL 404 (440)
Q Consensus 325 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 404 (440)
...+..+...+...|++++|...+++..+.... +...+..+..++.+.|++++|...+++..+..|.++..+..+..++
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 344555666666667777777777666654332 4556666666777777777777777777766666666666665555
Q ss_pred Hhc
Q 047359 405 CHL 407 (440)
Q Consensus 405 ~~~ 407 (440)
.+.
T Consensus 88 ~~~ 90 (91)
T 1na3_A 88 QKQ 90 (91)
T ss_dssp HHH
T ss_pred Hhc
Confidence 443
No 198
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.13 E-value=9.6e-05 Score=54.25 Aligned_cols=110 Identities=14% Similarity=0.092 Sum_probs=63.8
Q ss_pred CHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHh----cCcHHHHH
Q 047359 305 KWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFK----DGRMEEAV 380 (440)
Q Consensus 305 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~ 380 (440)
++++|.+.|++..+.|. |+.. +...|...+..++|.+.|++..+.| +...+..|...|.. .++.++|.
T Consensus 10 d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 45566666666655541 1221 4445555555666666666666542 44555555556655 56666666
Q ss_pred HHHHHHHHcCCCchhhHHHHHHHHHh----cccHHHHHHHHHHHHHCC
Q 047359 381 RIFDYMKELKVVSSSSFVIVVSRLCH----LKELRKAMKNHDEMLKMG 424 (440)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~ 424 (440)
+.|++..+.+ ++.++..+...|.. .++.++|.+.|++..+.|
T Consensus 82 ~~~~~Aa~~g--~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC--CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 6666666543 45556666666665 566666666666666654
No 199
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.13 E-value=1.1e-05 Score=69.78 Aligned_cols=153 Identities=14% Similarity=-0.017 Sum_probs=85.5
Q ss_pred CHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 047359 219 QDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVA 298 (440)
Q Consensus 219 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 298 (440)
....+..+...+.+.|++++|...|++..+.. |+... +...++.+++...+. ...|..+..
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~ 238 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHH
Confidence 34567778888999999999999999988753 33221 222333333332221 236777888
Q ss_pred HHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHH-HHhcCcHH
Q 047359 299 SQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDG-LFKDGRME 377 (440)
Q Consensus 299 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~ 377 (440)
++.+.|++++|...+++..+.... +...|..+..+|...|++++|...|++..+.... +...+..+... ....+..+
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999887543 6778888889999999999999999988775332 34455555544 33456677
Q ss_pred HHHHHHHHHHHcCCC
Q 047359 378 EAVRIFDYMKELKVV 392 (440)
Q Consensus 378 ~a~~~~~~~~~~~~~ 392 (440)
.+...|.++....+.
T Consensus 317 ~a~~~~~~~l~~~p~ 331 (338)
T 2if4_A 317 KQKEMYKGIFKGKDE 331 (338)
T ss_dssp ---------------
T ss_pred HHHHHHHHhhCCCCC
Confidence 788888888776655
No 200
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.12 E-value=3.4e-05 Score=54.66 Aligned_cols=78 Identities=12% Similarity=-0.038 Sum_probs=34.8
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHh
Q 047359 274 VCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEK 353 (440)
Q Consensus 274 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 353 (440)
+...++...+.. +.+...+..+...+...|++++|...+++.....+. +...|..+..+|...|++++|...|++..+
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444332 223334444444444455555555555544443322 333444444444455555555555544443
No 201
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.03 E-value=7.5e-05 Score=67.43 Aligned_cols=124 Identities=12% Similarity=-0.021 Sum_probs=87.7
Q ss_pred HHHcCCCHHHHHHHHHHHHhc-----CCC-C-chhhhHHHHHHHHcCCcHHHHHHHHHHHHhc-----cC-CcC-HHhHH
Q 047359 299 SQCGKGKWKEVEELLSAVLDK-----GLL-L-DSFCCSSLMEYYCSNRQIDKAIALHIKIEKL-----KG-SLD-VATYD 364 (440)
Q Consensus 299 ~~~~~~~~~~a~~~~~~~~~~-----~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~p~-~~~~~ 364 (440)
.+...|++++|+.++++.++. |.. | ...+++.|..+|...|++++|..++++..+. |. .|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 345678888888888777642 111 1 2346778888888888888888888887642 21 222 34678
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHH-----cCCCch---hhHHHHHHHHHhcccHHHHHHHHHHHHH
Q 047359 365 VLLDGLFKDGRMEEAVRIFDYMKE-----LKVVSS---SSFVIVVSRLCHLKELRKAMKNHDEMLK 422 (440)
Q Consensus 365 ~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 422 (440)
.|...|...|++++|+.+++++.+ .|+..+ .+...+..++...|.+++|..++.++++
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888889999999888887653 466533 3455677777788888999988888875
No 202
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.99 E-value=1.5e-05 Score=56.04 Aligned_cols=96 Identities=13% Similarity=0.034 Sum_probs=70.9
Q ss_pred CChHhHHHHHHHHHccCCcchHHHHHHHHHhcCCccChHhHHHHHHHHHhccchhHHHHHHHHHHHcCCCCC-------h
Q 047359 10 SQSDALSLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPN-------K 82 (440)
Q Consensus 10 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~ 82 (440)
++...+..+...+.+.|++++|++.|+...+.. +.+...+..+..++.+.|++++|.+.+++..+. .|+ .
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~ 78 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRS 78 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHH
Confidence 456777888888889999999999999988765 446778888888888999999999999988875 344 3
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHhcc
Q 047359 83 FTWSLVAQILCRSGKFEVVLGLLDSG 108 (440)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~a~~~~~~~ 108 (440)
..+..+..++...|+.+.|...++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 79 KLQYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHHHHhHhhhHhHHHHh
Confidence 44555555566666665555555444
No 203
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.98 E-value=4.9e-05 Score=52.20 Aligned_cols=65 Identities=20% Similarity=0.185 Sum_probs=38.4
Q ss_pred chhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHc
Q 047359 324 DSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKEL 389 (440)
Q Consensus 324 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 389 (440)
+...+..+...|...|++++|+..|++..+..+. +...|..+..+|...|++++|.+.|++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3445555666666666666666666666655433 4445666666666666666666666665544
No 204
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.93 E-value=0.00041 Score=50.84 Aligned_cols=110 Identities=15% Similarity=0.103 Sum_probs=56.6
Q ss_pred ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHc----CCcHHHHH
Q 047359 270 QPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCS----NRQIDKAI 345 (440)
Q Consensus 270 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~ 345 (440)
++++|..+|+...+.+ .|... +...|...+.+++|.+.|++..+.| +...+..+...|.. .++.++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 3444555555554443 11111 3344444445555555555555542 34444445555554 55666666
Q ss_pred HHHHHHHhccCCcCHHhHHHHHHHHHh----cCcHHHHHHHHHHHHHcC
Q 047359 346 ALHIKIEKLKGSLDVATYDVLLDGLFK----DGRMEEAVRIFDYMKELK 390 (440)
Q Consensus 346 ~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~ 390 (440)
+.|++..+.| +...+..|...|.. .++.++|.+.|++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 6666665542 34455555555555 566666666666665554
No 205
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.89 E-value=4.5e-05 Score=56.40 Aligned_cols=91 Identities=9% Similarity=-0.020 Sum_probs=65.8
Q ss_pred CCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCc----------HHHHHHHHHHHHhccCCcCHHhHHHHHHHHHh
Q 047359 303 KGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQ----------IDKAIALHIKIEKLKGSLDVATYDVLLDGLFK 372 (440)
Q Consensus 303 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 372 (440)
.+.+++|.+.++...+..+. +...|..+..++...++ +++|+..|++.++..+. +...|..+..+|..
T Consensus 15 ~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHH
Confidence 34566677777777666544 56666666666666554 45888888888886554 66788888888887
Q ss_pred cC-----------cHHHHHHHHHHHHHcCCCchh
Q 047359 373 DG-----------RMEEAVRIFDYMKELKVVSSS 395 (440)
Q Consensus 373 ~g-----------~~~~a~~~~~~~~~~~~~~~~ 395 (440)
.| ++++|++.|+++.+.+|.+..
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~ 126 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTH 126 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhCCCCHH
Confidence 64 899999999999998877543
No 206
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.88 E-value=0.00011 Score=66.35 Aligned_cols=126 Identities=12% Similarity=-0.004 Sum_probs=92.7
Q ss_pred HHHhcCChHHHHHHHHHHHHcC---CCC----ChhhHHHHHHHHHcCCCHHHHHHHHHHHHhc-----CCC-C-chhhhH
Q 047359 264 VLCKEHQPEEVCGLLRDVVERG---YIP----CAMELSRFVASQCGKGKWKEVEELLSAVLDK-----GLL-L-DSFCCS 329 (440)
Q Consensus 264 ~~~~~~~~~~a~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~-~-~~~~~~ 329 (440)
.+...|++++|+.++++..+.. +.| ...+++.|...|...|++++|+.++++..+. |.. | ...+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3557889999999888876431 112 3457888899999999999999998887642 322 2 234678
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHhc-----cCC-cC-HHhHHHHHHHHHhcCcHHHHHHHHHHHHHc
Q 047359 330 SLMEYYCSNRQIDKAIALHIKIEKL-----KGS-LD-VATYDVLLDGLFKDGRMEEAVRIFDYMKEL 389 (440)
Q Consensus 330 ~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~-p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 389 (440)
.|...|...|++++|+.++++..+. |.. |+ ..+...+..++...+.+++|+.+++++++.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999999999888742 321 22 234566777888899999999999998764
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.84 E-value=9.9e-05 Score=50.64 Aligned_cols=63 Identities=13% Similarity=0.095 Sum_probs=33.9
Q ss_pred HHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Q 047359 360 VATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLKELRKAMKNHDEMLK 422 (440)
Q Consensus 360 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 422 (440)
...+..+...|...|++++|+..|+++.+.+|.++.+|..+..+|...|++++|.+.+++.++
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344455555555555555555555555555555555555555555555555555555555443
No 208
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.79 E-value=0.00018 Score=48.08 Aligned_cols=69 Identities=14% Similarity=0.294 Sum_probs=61.7
Q ss_pred CHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcccHHHHHHHHHHHHHCCCCCCH
Q 047359 359 DVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDE 429 (440)
Q Consensus 359 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 429 (440)
+...+..+...+...|++++|...+++..+..+.++..+..+..++.+.|++++|...+++..+. .|+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~ 76 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNN 76 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCC
Confidence 45678888899999999999999999999998888899999999999999999999999999883 4543
No 209
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.67 E-value=0.00046 Score=50.46 Aligned_cols=85 Identities=13% Similarity=0.033 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCC---cHHHHHHHHHHHHhccCCc--CHHhHHHHHHHHHhcCcHHHHH
Q 047359 306 WKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNR---QIDKAIALHIKIEKLKGSL--DVATYDVLLDGLFKDGRMEEAV 380 (440)
Q Consensus 306 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~ 380 (440)
...+.+-|.+....+. ++..+.-.+..++++.+ +.++++.+++...+.. .| +...+..|.-+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 3344444444444333 34444444444555554 3445555555555542 12 2334444444555555555555
Q ss_pred HHHHHHHHcCCC
Q 047359 381 RIFDYMKELKVV 392 (440)
Q Consensus 381 ~~~~~~~~~~~~ 392 (440)
+.++.+.+..|.
T Consensus 92 ~y~~~lL~ieP~ 103 (152)
T 1pc2_A 92 KYVRGLLQTEPQ 103 (152)
T ss_dssp HHHHHHHHHCTT
T ss_pred HHHHHHHhcCCC
Confidence 555555555544
No 210
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.64 E-value=0.00024 Score=48.47 Aligned_cols=82 Identities=12% Similarity=0.090 Sum_probs=54.5
Q ss_pred HHHHHHcCCcHHHHHHHHHHHHhccCCcCHH-hHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhccc
Q 047359 331 LMEYYCSNRQIDKAIALHIKIEKLKGSLDVA-TYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLKE 409 (440)
Q Consensus 331 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 409 (440)
....+...|++++|.+.+++..+.... +.. .+..+..+|...|++++|.+.|+++.+.+|.+..++.. +.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~ 76 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KM 76 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HH
Confidence 344566777888888888877775433 455 77777777888888888888888888777775555422 44
Q ss_pred HHHHHHHHHHHH
Q 047359 410 LRKAMKNHDEML 421 (440)
Q Consensus 410 ~~~a~~~~~~m~ 421 (440)
+.++...+++..
T Consensus 77 ~~~a~~~~~~~~ 88 (99)
T 2kc7_A 77 VMDILNFYNKDM 88 (99)
T ss_dssp HHHHHHHHCCTT
T ss_pred HHHHHHHHHHHh
Confidence 555555554443
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.62 E-value=0.0021 Score=54.83 Aligned_cols=73 Identities=14% Similarity=0.104 Sum_probs=49.8
Q ss_pred cCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcccHHHHHHHHHHHHHCCCCCCHHHHH
Q 047359 358 LDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDEATYK 433 (440)
Q Consensus 358 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~ 433 (440)
.+..+|..+...+...|++++|...++++...+ ++...|..+...+.-.|++++|.+.+++... +.|...||.
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln-~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~~ 347 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE-MSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTLY 347 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChHH
Confidence 355666666666666677777777777777776 3455566666777777777777777777776 456666654
No 212
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.60 E-value=0.00055 Score=45.92 Aligned_cols=66 Identities=8% Similarity=0.117 Sum_probs=50.7
Q ss_pred cCHHhHHHHHHHHHhcCc---HHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcccHHHHHHHHHHHHHC
Q 047359 358 LDVATYDVLLDGLFKDGR---MEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLKELRKAMKNHDEMLKM 423 (440)
Q Consensus 358 p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 423 (440)
.+...+..+..++...++ .++|..++++..+.+|.++.+...+...+.+.|++++|+..|+++++.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 356666777777654444 688888888888888888888888888888888888888888888873
No 213
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.38 E-value=0.00065 Score=46.22 Aligned_cols=62 Identities=18% Similarity=0.401 Sum_probs=55.4
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHHcCCCchh-hHHHHHHHHHhcccHHHHHHHHHHHHHCCCCCCH
Q 047359 366 LLDGLFKDGRMEEAVRIFDYMKELKVVSSS-SFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDE 429 (440)
Q Consensus 366 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 429 (440)
....+.+.|++++|.+.|+++.+..+.++. .+..+..++...|++++|.+.|++.++. .|+.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~ 68 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL--NPDS 68 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCc
Confidence 456778899999999999999999988888 9999999999999999999999999983 4554
No 214
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.28 E-value=0.0015 Score=57.96 Aligned_cols=86 Identities=7% Similarity=-0.046 Sum_probs=63.8
Q ss_pred cCCcHHHHHHHHHHHHhcc---CC---cC-HHhHHHHHHHHHhcCcHHHHHHHHHHHHH-----cCCC---chhhHHHHH
Q 047359 337 SNRQIDKAIALHIKIEKLK---GS---LD-VATYDVLLDGLFKDGRMEEAVRIFDYMKE-----LKVV---SSSSFVIVV 401 (440)
Q Consensus 337 ~~~~~~~a~~~~~~~~~~~---~~---p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~---~~~~~~~l~ 401 (440)
..|++++|+.++++..+.. +. |+ ..+++.|..+|...|++++|+.+++++.+ .|+. ...+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 3467888888888776531 11 22 35778888888889999999888887753 4555 334688888
Q ss_pred HHHHhcccHHHHHHHHHHHHH
Q 047359 402 SRLCHLKELRKAMKNHDEMLK 422 (440)
Q Consensus 402 ~~~~~~g~~~~a~~~~~~m~~ 422 (440)
..|..+|++++|..++++.++
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 899999999999999888765
No 215
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.28 E-value=2.1e-05 Score=68.44 Aligned_cols=245 Identities=11% Similarity=0.035 Sum_probs=156.8
Q ss_pred ChHhHHHHHHHHHccCCcchHHHHHHHHHhcCCccChHhHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHH
Q 047359 11 QSDALSLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQ 90 (440)
Q Consensus 11 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 90 (440)
.+.+|+.|..+....++..+|++.|-+. .|+..|..++....+.|.+++-.+.+...++.. .++..=+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHH
Confidence 4567888888888888888887755322 366678899999999999999999888776653 34455568999
Q ss_pred HHHhcCChHHHHHHHhcccCCchhHHHHHHHHHhcCChhHHHHHHHHHhcC-------------------CCCCCchhhH
Q 047359 91 ILCRSGKFEVVLGLLDSGIYSSVMYNLVIDFYSKKGDFGAAFDRLNEMCNG-------------------RNLTPGFSTY 151 (440)
Q Consensus 91 ~~~~~~~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-------------------~~~~p~~~~~ 151 (440)
+|++.++..+-.+++.. |+..-...+.+-|...|.++.|.-+|..+..- ..-.-++.||
T Consensus 125 ayAk~~rL~elEefl~~--~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktW 202 (624)
T 3lvg_A 125 ALAKTNRLAELEEFING--PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTW 202 (624)
T ss_dssp HHHTSCSSSTTTSTTSC--CSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSH
T ss_pred HHHhhCcHHHHHHHHcC--CCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHH
Confidence 99999987654443322 66666677777777778877777666655320 1112366789
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhcCCCCcccccchHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHh
Q 047359 152 SSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALS 231 (440)
Q Consensus 152 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 231 (440)
..+-.+|...+.+..|.-.--.++-. |+ -...++..|-..|.+++.+.+++..... -+....+|+-|.-.|+
T Consensus 203 KeV~~ACvd~~EfrLAqicGLniIvh---ad----eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYs 274 (624)
T 3lvg_A 203 KEVCFACVDGKEFRLAQMCGLHIVVH---AD----ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYS 274 (624)
T ss_dssp HHHTHHHHHSCTTTTTTHHHHHHHCC---SS----CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCchHHHHHHHhcchhccc---HH----HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHH
Confidence 99999999998888776554444322 11 2233666778888888888888776632 2345667777777776
Q ss_pred hhccHHHHHHHHHHHHHc-CCCC------ChhhHHHHHHHHHhcCChHHH
Q 047359 232 KEGRVKEAIQIYHLISER-GITV------RDSDYYAFVNVLCKEHQPEEV 274 (440)
Q Consensus 232 ~~~~~~~a~~~~~~~~~~-~~~~------~~~~~~~l~~~~~~~~~~~~a 274 (440)
+- ++++..+.++....+ +++- ....|.-++-.|..-.++|.|
T Consensus 275 KY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA 323 (624)
T 3lvg_A 275 KF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNA 323 (624)
T ss_dssp SS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHH
T ss_pred hc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHH
Confidence 54 333333333221111 1110 223455555555555555544
No 216
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.26 E-value=0.015 Score=56.89 Aligned_cols=102 Identities=11% Similarity=0.069 Sum_probs=54.1
Q ss_pred HHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhcccCCchhHHHHHHHHHhcCChhH
Q 047359 51 NALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSGKFEVVLGLLDSGIYSSVMYNLVIDFYSKKGDFGA 130 (440)
Q Consensus 51 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 130 (440)
..++..+.+.|..+.|.++.+. . ..-.......|++++|.++.+.+ .+...|..+...+.+.|+++.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~---------~---~~~f~~~l~~~~~~~A~~~~~~~-~~~~~W~~la~~al~~~~~~~ 699 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPD---------Q---DQKFELALKVGQLTLARDLLTDE-SAEMKWRALGDASLQRFNFKL 699 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCC---------H---HHHHHHHHHHTCHHHHHHHHTTC-CCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhCCChHHheecCCC---------c---chheehhhhcCCHHHHHHHHHhh-CcHhHHHHHHHHHHHcCCHHH
Confidence 5555556666666666654421 1 01123344566666666665544 344566666666666666666
Q ss_pred HHHHHHHHhcCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHH
Q 047359 131 AFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMV 175 (440)
Q Consensus 131 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 175 (440)
|.+.|..+.. |..+...+...|+.+...++.+...
T Consensus 700 A~~~y~~~~d----------~~~l~~l~~~~~~~~~~~~~~~~a~ 734 (814)
T 3mkq_A 700 AIEAFTNAHD----------LESLFLLHSSFNNKEGLVTLAKDAE 734 (814)
T ss_dssp HHHHHHHHTC----------HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHccC----------hhhhHHHHHHcCCHHHHHHHHHHHH
Confidence 6666666643 3334444444555554444433333
No 217
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.22 E-value=0.0033 Score=53.61 Aligned_cols=137 Identities=12% Similarity=0.064 Sum_probs=91.0
Q ss_pred ccChHhHHHHHHHHHh--c---cchhHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHh---cC--C------hHHHHHHHh
Q 047359 44 VPAVSACNALLDALYR--Q---NEIRLASCLYGAMVRDGVSPN-KFTWSLVAQILCR---SG--K------FEVVLGLLD 106 (440)
Q Consensus 44 ~~~~~~~~~ll~~~~~--~---~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~---~~--~------~~~a~~~~~ 106 (440)
+.+..+|...+++... . .+..+|..+|++.++. .|+ ...|..+.-++.. .+ . ...+.+...
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 5677788877766543 2 3357889999998876 454 3444433333321 11 0 112222222
Q ss_pred ccc---CCchhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCcc
Q 047359 107 SGI---YSSVMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKH 183 (440)
Q Consensus 107 ~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 183 (440)
.+. .+..+|..+...+...|++++|...+++... +.|+...|..+...+.-.|++++|.+.+++....+ |.
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~---Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~--P~- 342 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGID---LEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR--PG- 342 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CS-
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CC-
Confidence 222 5666777777777778999999999999988 45888788788888889999999999999988865 55
Q ss_pred cccchH
Q 047359 184 FLSGND 189 (440)
Q Consensus 184 ~~~~~~ 189 (440)
..+|.
T Consensus 343 -~~t~~ 347 (372)
T 3ly7_A 343 -ANTLY 347 (372)
T ss_dssp -HHHHH
T ss_pred -cChHH
Confidence 44443
No 218
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.18 E-value=0.0028 Score=43.58 Aligned_cols=77 Identities=12% Similarity=0.057 Sum_probs=56.7
Q ss_pred chhhhHHHHHHHHcCCcHHHHHHHHHHHHhcc------CCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhH
Q 047359 324 DSFCCSSLMEYYCSNRQIDKAIALHIKIEKLK------GSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSF 397 (440)
Q Consensus 324 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 397 (440)
+..-+..+...+...|+++.|...++...+.. ..+....+..|..++.+.|+++.|...++++.+..|.++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 44455677778888888888888888877642 123456778888888888888888888888888877766554
Q ss_pred HHH
Q 047359 398 VIV 400 (440)
Q Consensus 398 ~~l 400 (440)
..+
T Consensus 84 ~n~ 86 (104)
T 2v5f_A 84 GNL 86 (104)
T ss_dssp HHH
T ss_pred hhH
Confidence 433
No 219
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.12 E-value=0.0033 Score=55.85 Aligned_cols=90 Identities=18% Similarity=0.074 Sum_probs=61.0
Q ss_pred HHHHcCCcHHHHHHHHHHHHhcc---CCcC----HHhHHHHHHHHHhcCcHHHHHHHHHHHHH-----cCCCc---hhhH
Q 047359 333 EYYCSNRQIDKAIALHIKIEKLK---GSLD----VATYDVLLDGLFKDGRMEEAVRIFDYMKE-----LKVVS---SSSF 397 (440)
Q Consensus 333 ~~~~~~~~~~~a~~~~~~~~~~~---~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~---~~~~ 397 (440)
..+.+.|++++|+.++++..+.. +.|+ ..+++.|..+|...|++++|+.+++++.+ .|+.. ..++
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 34456677777777777776431 1121 34677777788888888888888776652 34442 3467
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHH
Q 047359 398 VIVVSRLCHLKELRKAMKNHDEMLK 422 (440)
Q Consensus 398 ~~l~~~~~~~g~~~~a~~~~~~m~~ 422 (440)
+.|...|...|++++|..++++.++
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 7788888888888888888887764
No 220
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.08 E-value=0.008 Score=43.92 Aligned_cols=87 Identities=13% Similarity=0.071 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcC---cHHHHHHHHHHHHHcC-CC-chhhHHHHHHHHHhcccHHHHHH
Q 047359 341 IDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDG---RMEEAVRIFDYMKELK-VV-SSSSFVIVVSRLCHLKELRKAMK 415 (440)
Q Consensus 341 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~a~~ 415 (440)
...+.+-|.+..+.+. ++..+...+..++++.+ +.++++.+|++..+.+ |. +...+..+..++.+.|++++|.+
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 4445555555555444 46666666666676666 5557777777766665 42 45566666666777777777777
Q ss_pred HHHHHHHCCCCCCHH
Q 047359 416 NHDEMLKMGHKPDEA 430 (440)
Q Consensus 416 ~~~~m~~~~~~p~~~ 430 (440)
.++.+++ ++|+..
T Consensus 93 y~~~lL~--ieP~n~ 105 (152)
T 1pc2_A 93 YVRGLLQ--TEPQNN 105 (152)
T ss_dssp HHHHHHH--HCTTCH
T ss_pred HHHHHHh--cCCCCH
Confidence 7777766 456543
No 221
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.08 E-value=0.00044 Score=60.38 Aligned_cols=212 Identities=12% Similarity=0.027 Sum_probs=140.5
Q ss_pred CChHhHHHHHHHHHccCCcchHHHHHHHHHhcCCccChHhHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHH
Q 047359 10 SQSDALSLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVA 89 (440)
Q Consensus 10 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 89 (440)
-|+..|..+|....+.|.+++-++.+...++.. .++..=+.|+-+|++.++..+..+++. .||..-...+.
T Consensus 81 ~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ayAk~~rL~elEefl~-------~~N~A~iq~VG 151 (624)
T 3lvg_A 81 DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVG 151 (624)
T ss_dssp SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHHHhhCcHHHHHHHHc-------CCCcccHHHHH
Confidence 466778889999999999999999998887653 344555689999999998766554432 36666667788
Q ss_pred HHHHhcCChHHHHHHHhccc-------------------------CCchhHHHHHHHHHhcCChhHHHHHHHHHhcCCCC
Q 047359 90 QILCRSGKFEVVLGLLDSGI-------------------------YSSVMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNL 144 (440)
Q Consensus 90 ~~~~~~~~~~~a~~~~~~~~-------------------------~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 144 (440)
+-|...|.++.|.-+|..+. .++.+|-.+-.+|...+.+.-|.-.--.+.-
T Consensus 152 Drcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIv---- 227 (624)
T 3lvg_A 152 DRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---- 227 (624)
T ss_dssp HHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC----
T ss_pred HHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcc----
Confidence 88888888888888877654 5667899999999999998887655444432
Q ss_pred CCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCcccccchHHHHHHHhhcCcHHHHHHHHHHHHhc-CCC------
Q 047359 145 TPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDE-KIE------ 217 (440)
Q Consensus 145 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~------ 217 (440)
.|| -...++..|-..|.+++.+.+++.-.. +.--+ ...|+-|.-.|++- ++++..+.++....+ +++
T Consensus 228 had--eL~elv~~YE~~G~f~ELIsLlEaglg--lErAH-mGmFTELaILYsKY-~PeKlmEHlklf~sriNipKvirac 301 (624)
T 3lvg_A 228 HAD--ELEELINYYQDRGYFEELITMLEAALG--LERAH-MGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAA 301 (624)
T ss_dssp CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTT--STTCC-HHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHH
T ss_pred cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhC--CCchh-HHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHH
Confidence 122 122345557778888888888777653 22221 56677777777665 344444444332221 111
Q ss_pred CCHHhHHHHHHHHhhhccHHHHH
Q 047359 218 LQDDTCGCMLKALSKEGRVKEAI 240 (440)
Q Consensus 218 ~~~~~~~~l~~~~~~~~~~~~a~ 240 (440)
-....|..++-.|.+-.+++.|.
T Consensus 302 E~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 302 EQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp TTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHhhHHHHHHHHhcchhHHHHH
Confidence 12335666666676666666554
No 222
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=97.01 E-value=0.046 Score=38.53 Aligned_cols=138 Identities=14% Similarity=0.107 Sum_probs=72.9
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHH
Q 047359 267 KEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIA 346 (440)
Q Consensus 267 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 346 (440)
-.|..++..++..+.... .+..-+|.++--....-+-+-..++++.+-+. .|. ...|++.....
T Consensus 19 ldG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrVi~ 82 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVVE 82 (172)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHHH
T ss_pred HhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHHHH
Confidence 356666666666666553 23334444444433334444444444433221 121 12333333333
Q ss_pred HHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcccHHHHHHHHHHHHHCCC
Q 047359 347 LHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLKELRKAMKNHDEMLKMGH 425 (440)
Q Consensus 347 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 425 (440)
.+-.+- .+...+..-+..+...|+-+.-.+++..+....++++.....+..+|.+.|+..+|.+++.++.+.|+
T Consensus 83 C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 83 CGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 332221 13444555566666677777777777665444444666677777777777777777777777776664
No 223
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.01 E-value=0.013 Score=57.27 Aligned_cols=151 Identities=10% Similarity=-0.007 Sum_probs=70.2
Q ss_pred HhcCChHHHHH-HHhcccCCchhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCchhhHHHHHHHHHhcCChhhHHHHH
Q 047359 93 CRSGKFEVVLG-LLDSGIYSSVMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIV 171 (440)
Q Consensus 93 ~~~~~~~~a~~-~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 171 (440)
...+++++|.+ ++..+. +......++..+.+.|..+.|+++.+.-. .-.......|+++.|.++.
T Consensus 610 ~~~~~~~~a~~~~l~~i~-~~~~~~~~~~~l~~~~~~~~a~~~~~~~~-------------~~f~~~l~~~~~~~A~~~~ 675 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNVE-GKDSLTKIARFLEGQEYYEEALNISPDQD-------------QKFELALKVGQLTLARDLL 675 (814)
T ss_dssp HHTTCHHHHHHHTGGGCC-CHHHHHHHHHHHHHTTCHHHHHHHCCCHH-------------HHHHHHHHHTCHHHHHHHH
T ss_pred HHhCCHHHHHHHHHhcCC-chHHHHHHHHHHHhCCChHHheecCCCcc-------------hheehhhhcCCHHHHHHHH
Confidence 34556666655 443322 01122555555556666666554432110 0122334556666666554
Q ss_pred HHHHhcCCCCcccccchHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCC
Q 047359 172 GLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGI 251 (440)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 251 (440)
+.+ .+ ...|..+...+.+.++++.|++.|.++.+ |..+...+...|+.+...++-+.....|.
T Consensus 676 ~~~------~~--~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~ 738 (814)
T 3mkq_A 676 TDE------SA--EMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK 738 (814)
T ss_dssp TTC------CC--HHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred Hhh------Cc--HhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc
Confidence 322 12 45566666666666666666666665542 22333334444555444444433333321
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 047359 252 TVRDSDYYAFVNVLCKEHQPEEVCGLLRD 280 (440)
Q Consensus 252 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 280 (440)
++....++.+.|++++|.+++.+
T Consensus 739 ------~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 739 ------FNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp ------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred ------hHHHHHHHHHcCCHHHHHHHHHH
Confidence 22333334444555555544443
No 224
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.93 E-value=0.0091 Score=41.91 Aligned_cols=79 Identities=13% Similarity=0.029 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHH---HHHHHHHHHHcC-CC-chhhHHHHHHHHHhcccHHHHHHHH
Q 047359 343 KAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEE---AVRIFDYMKELK-VV-SSSSFVIVVSRLCHLKELRKAMKNH 417 (440)
Q Consensus 343 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~a~~~~ 417 (440)
.+.+-|.+....|. |+..+-..+.+++.+..+... ++.+++.+...+ |. .......+.-++.+.|++++|.+.+
T Consensus 19 ~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~ 97 (126)
T 1nzn_A 19 KFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 97 (126)
T ss_dssp HHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 33334443333322 344444455555555444333 555555555444 22 3344455555555555555555555
Q ss_pred HHHHH
Q 047359 418 DEMLK 422 (440)
Q Consensus 418 ~~m~~ 422 (440)
+.+++
T Consensus 98 ~~lL~ 102 (126)
T 1nzn_A 98 RGLLQ 102 (126)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55555
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.91 E-value=0.012 Score=40.37 Aligned_cols=64 Identities=14% Similarity=0.073 Sum_probs=36.9
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHhcC------CCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhc
Q 047359 291 MELSRFVASQCGKGKWKEVEELLSAVLDKG------LLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKL 354 (440)
Q Consensus 291 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 354 (440)
..+..+...+...++++.|...++...+.. -.+....+..+..+|.+.|+++.|...++++.+.
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 344455666666666666666666655421 1123445566666666666666666666666653
No 226
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.90 E-value=0.0082 Score=49.07 Aligned_cols=86 Identities=12% Similarity=0.062 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHhcCCCC-chhhhHHHHHHHHcC-----CcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhc-CcHHHH
Q 047359 307 KEVEELLSAVLDKGLLL-DSFCCSSLMEYYCSN-----RQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKD-GRMEEA 379 (440)
Q Consensus 307 ~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~a 379 (440)
..|...+++..+..+.- +...|..+...|... |+.++|.+.|++.++.+..-+..++......++.. |+.+++
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a 259 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGF 259 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHH
Confidence 44555555555542210 133555555555552 66666666666666543322344555555555553 666666
Q ss_pred HHHHHHHHHcCCC
Q 047359 380 VRIFDYMKELKVV 392 (440)
Q Consensus 380 ~~~~~~~~~~~~~ 392 (440)
.+.+++.....+.
T Consensus 260 ~~~L~kAL~a~p~ 272 (301)
T 3u64_A 260 DEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHCCGG
T ss_pred HHHHHHHHcCCCC
Confidence 6666666655444
No 227
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.90 E-value=0.015 Score=38.84 Aligned_cols=68 Identities=12% Similarity=0.071 Sum_probs=36.5
Q ss_pred chhhhHHHHHHHHcCCc---HHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCC
Q 047359 324 DSFCCSSLMEYYCSNRQ---IDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVV 392 (440)
Q Consensus 324 ~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 392 (440)
+...+..+..++...++ .++|..++++..+..+. +......+...+.+.|++++|+..|+++.+..+.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 34444444444433332 45666666666654333 4445555555566666666666666666655544
No 228
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.90 E-value=0.027 Score=40.57 Aligned_cols=66 Identities=11% Similarity=0.029 Sum_probs=47.1
Q ss_pred CCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHH
Q 047359 338 NRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRL 404 (440)
Q Consensus 338 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 404 (440)
.++.++|.++|+.+++..-+- ...|-.....-.++|+.+.|.+++.+....++.+...+...+.-+
T Consensus 73 i~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~nl 138 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALRNL 138 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHHhh
Confidence 367788888888887653332 666766677777888888888888888887777766666655543
No 229
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.82 E-value=0.0041 Score=55.17 Aligned_cols=63 Identities=8% Similarity=-0.007 Sum_probs=31.8
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHhc-----CCC-Cc-hhhhHHHHHHHHcCCcHHHHHHHHHHHHh
Q 047359 291 MELSRFVASQCGKGKWKEVEELLSAVLDK-----GLL-LD-SFCCSSLMEYYCSNRQIDKAIALHIKIEK 353 (440)
Q Consensus 291 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~-~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 353 (440)
.+++.+..+|...|++++|+.++++..+. |.. |+ ..+++.|...|...|++++|+.++++..+
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 34555555555555555555555554321 111 11 22455555566666666666666655543
No 230
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.72 E-value=0.0065 Score=53.98 Aligned_cols=61 Identities=7% Similarity=-0.151 Sum_probs=28.5
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHhc-----CCC-C-chhhhHHHHHHHHcCCcHHHHHHHHHHHH
Q 047359 292 ELSRFVASQCGKGKWKEVEELLSAVLDK-----GLL-L-DSFCCSSLMEYYCSNRQIDKAIALHIKIE 352 (440)
Q Consensus 292 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 352 (440)
+++.+...|...|++++|+.++++.... |.. | ...+++.|...|...|++++|+.++++..
T Consensus 331 ~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 331 VLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3444444454455555555554444321 111 1 12234455555555555555555555554
No 231
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.60 E-value=0.11 Score=36.75 Aligned_cols=138 Identities=14% Similarity=0.064 Sum_probs=72.6
Q ss_pred hccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHH
Q 047359 233 EGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEEL 312 (440)
Q Consensus 233 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 312 (440)
.|..++..++..+..... +..-||-++.-....-+-+-..++++.+-+. -|. ..+|++.....-
T Consensus 20 dG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrVi~C 83 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVVEC 83 (172)
T ss_dssp TTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHHHH
T ss_pred hhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHHHHH
Confidence 466666666666665542 3344555555444444545555555544332 111 112333333222
Q ss_pred HHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCC
Q 047359 313 LSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVV 392 (440)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 392 (440)
+-.+- .+.......+......|+-++-.+++..+.. +.+|++...-.+..+|.+.|+..+|.+++.++-+.|.+
T Consensus 84 ~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 84 GVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 22211 1344455556666666776666666666543 23456666666677777777777777777776666654
No 232
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.32 E-value=0.061 Score=38.83 Aligned_cols=54 Identities=11% Similarity=0.079 Sum_probs=37.1
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCc
Q 047359 304 GKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSL 358 (440)
Q Consensus 304 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 358 (440)
+++++|.++|+.+.+.+-+. ...|....+.-.+.|++..|.+++.+.+..+.+|
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 67777777777776543332 5556566666667888888888888887776664
No 233
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.25 E-value=0.24 Score=37.19 Aligned_cols=44 Identities=14% Similarity=0.091 Sum_probs=19.4
Q ss_pred hcCChHHHHHHHhcccCCchhHHHHHHHHHhcCChhHHHHHHHHH
Q 047359 94 RSGKFEVVLGLLDSGIYSSVMYNLVIDFYSKKGDFGAAFDRLNEM 138 (440)
Q Consensus 94 ~~~~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 138 (440)
..|+++.|.++.+.+ .+...|..|.......|+++-|.+.|...
T Consensus 17 ~lg~l~~A~e~a~~l-~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL-NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HTTCHHHHHHHHHHH-CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHh-CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 344444444443332 23334444444444444444444444444
No 234
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.20 E-value=0.062 Score=37.73 Aligned_cols=91 Identities=11% Similarity=0.010 Sum_probs=57.9
Q ss_pred CHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHH---HHHHHHHHHhcc-CCcCHHhHHHHHHHHHhcCcHHHHH
Q 047359 305 KWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDK---AIALHIKIEKLK-GSLDVATYDVLLDGLFKDGRMEEAV 380 (440)
Q Consensus 305 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~ 380 (440)
.+..+.+-+......|. |+..+--.+..++.+..+... ++.+++.+.+.+ +.-.....-.|.-++.+.|+++.|.
T Consensus 16 ~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 34455555555554443 455555566667777665554 777777777653 1113445556677788888888888
Q ss_pred HHHHHHHHcCCCchhh
Q 047359 381 RIFDYMKELKVVSSSS 396 (440)
Q Consensus 381 ~~~~~~~~~~~~~~~~ 396 (440)
+.++.+.+..|.+..+
T Consensus 95 ~~~~~lL~~eP~n~QA 110 (126)
T 1nzn_A 95 KYVRGLLQTEPQNNQA 110 (126)
T ss_dssp HHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHhCCCCHHH
Confidence 8888888887765443
No 235
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.16 E-value=0.27 Score=36.90 Aligned_cols=46 Identities=20% Similarity=0.091 Sum_probs=23.7
Q ss_pred HhhcCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHH
Q 047359 195 LSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLI 246 (440)
Q Consensus 195 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 246 (440)
..+.|+++.|.++.+.+ .+...|..+.......|+++-|.+.|...
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 34445555555554443 13445555555555555555555555543
No 236
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.10 E-value=0.46 Score=38.98 Aligned_cols=84 Identities=14% Similarity=0.027 Sum_probs=50.6
Q ss_pred hHHHHHHHHHhcCCCCCCc---hhhHHHHHHHHHhc-----CChhhHHHHHHHHHhcCCCCcccccchHHHHHHHhhc-C
Q 047359 129 GAAFDRLNEMCNGRNLTPG---FSTYSSILDGARRY-----EKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDM-G 199 (440)
Q Consensus 129 ~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~ 199 (440)
..|...+++..+ +.|+ ...|..+...|.+. |+.++|.+.|++.++.+ |+....++......++.. |
T Consensus 180 ~~A~a~lerAle---LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~Ln--P~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 180 HAAVMMLERACD---LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYC--SAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHH---HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHC--CTTCSHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHH---hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhC--CCCCchHHHHHHHHHHHhcC
Confidence 455566666655 5555 33566666666663 67777777777776654 322245555566666663 6
Q ss_pred cHHHHHHHHHHHHhcCCC
Q 047359 200 KTYAAEMIFKRACDEKIE 217 (440)
Q Consensus 200 ~~~~a~~~~~~~~~~~~~ 217 (440)
+.+.+.+.+++.....+.
T Consensus 255 d~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 255 NRAGFDEALDRALAIDPE 272 (301)
T ss_dssp CHHHHHHHHHHHHHCCGG
T ss_pred CHHHHHHHHHHHHcCCCC
Confidence 667777777766665555
No 237
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.87 E-value=0.91 Score=40.47 Aligned_cols=187 Identities=12% Similarity=0.051 Sum_probs=95.6
Q ss_pred CChhhHHHHHHHHHhcC-----CCCcccccchHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHh----h
Q 047359 162 EKTEVSDRIVGLMVEKK-----LLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALS----K 232 (440)
Q Consensus 162 ~~~~~a~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~ 232 (440)
|+++.|.+.+-.+.+.. .... ......++..|...|+++...+.+..+.+..-.. ......++..+. .
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~--~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~ 106 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASS--KEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKS 106 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTC--HHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhH--HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhc
Confidence 67777777776665431 1122 4445667778888888888777776655432221 112223332221 2
Q ss_pred hccHHHHHHHHHHHHHc--CCC-----C---ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-----hhhHHHHH
Q 047359 233 EGRVKEAIQIYHLISER--GIT-----V---RDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPC-----AMELSRFV 297 (440)
Q Consensus 233 ~~~~~~a~~~~~~~~~~--~~~-----~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~ 297 (440)
....+.... ....+. .+. . .......+...+...|++.+|.+++..+...-...+ ...+...+
T Consensus 107 ~~~~d~~~~--~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~ 184 (445)
T 4b4t_P 107 SKSLDLNTR--ISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQM 184 (445)
T ss_dssp HCTTHHHHH--HHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHH
T ss_pred CCchhHHHH--HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 222221111 111111 111 1 011224556667777777777777777653211111 12445556
Q ss_pred HHHHcCCCHHHHHHHHHHHHh----cCCCCc--hhhhHHHHHHHHcCCcHHHHHHHHHHHHh
Q 047359 298 ASQCGKGKWKEVEELLSAVLD----KGLLLD--SFCCSSLMEYYCSNRQIDKAIALHIKIEK 353 (440)
Q Consensus 298 ~~~~~~~~~~~a~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 353 (440)
+.|...+++.+|..+++++.. ....|+ ...+...+..+...+++.+|-+.|.++.+
T Consensus 185 rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 185 ELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 666677777777777776532 111121 12345555666667777777766666654
No 238
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=95.83 E-value=0.2 Score=35.29 Aligned_cols=72 Identities=14% Similarity=0.122 Sum_probs=41.1
Q ss_pred CCcCHHhHHHHHHHHHhcCc---HHHHHHHHHHHHHcCCC-chhhHHHHHHHHHhcccHHHHHHHHHHHHHCCCCCCH
Q 047359 356 GSLDVATYDVLLDGLFKDGR---MEEAVRIFDYMKELKVV-SSSSFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDE 429 (440)
Q Consensus 356 ~~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 429 (440)
..|+..+--.+.+++.+..+ ..+++.+++.+.+.++. ....+..+.-++.+.|++++|.+..+.+++ +.|+.
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N 111 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 111 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTC
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCC
Confidence 34455555555555555443 33456666666655554 445556666666666666666666666666 45554
No 239
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.31 E-value=0.25 Score=46.83 Aligned_cols=53 Identities=23% Similarity=0.191 Sum_probs=42.3
Q ss_pred HHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcccHHHHHHHHHHH
Q 047359 368 DGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLKELRKAMKNHDEM 420 (440)
Q Consensus 368 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 420 (440)
+.|...|+++.|+++-++....-|.+-.+|..|..+|...|+++.|+-.+..+
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 34556788888888888888877778888888888888888888888877776
No 240
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=95.19 E-value=0.56 Score=33.57 Aligned_cols=70 Identities=14% Similarity=0.126 Sum_probs=34.1
Q ss_pred cCHHhHHHHHHHHHhcCc---HHHHHHHHHHHHHcCCC-chhhHHHHHHHHHhcccHHHHHHHHHHHHHCCCCCCH
Q 047359 358 LDVATYDVLLDGLFKDGR---MEEAVRIFDYMKELKVV-SSSSFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDE 429 (440)
Q Consensus 358 p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 429 (440)
|+..+--.+.+++.+..+ ..+++.+++.+...++. .......+.-++.+.|++++|.+..+.+++ +.|+.
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~n 110 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 110 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCCC
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCc
Confidence 444444444444444432 23445555555544443 334444555555555555555555555555 34543
No 241
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.16 E-value=0.11 Score=45.53 Aligned_cols=69 Identities=7% Similarity=0.079 Sum_probs=50.0
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcccHHHHHHHHHHHHH-----CCCCCCHHH
Q 047359 363 YDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLKELRKAMKNHDEMLK-----MGHKPDEAT 431 (440)
Q Consensus 363 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~t 431 (440)
...++..+...|++++|...++.+....|.+...+..++.++.+.|+..+|++.|+++.+ .|+.|+..+
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 345566667777777777777777777777777777777888888887778777777643 477777654
No 242
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.91 E-value=3.1 Score=40.61 Aligned_cols=257 Identities=11% Similarity=-0.010 Sum_probs=127.8
Q ss_pred HHHhcCChhhHHHHHHHHHhcCCCCcccccchHHHHHHHhhcCcHHHHHHHHHHHHhcCC-------CCCHHhHHHHH--
Q 047359 157 GARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKI-------ELQDDTCGCML-- 227 (440)
Q Consensus 157 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~l~-- 227 (440)
+....|+.+++..++......+...+.....-..+.-+....|..+++..++.......- .+....-..+.
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 345667777777776655442101111122223333445555555567776666554321 01111122222
Q ss_pred HHHhhhccHHHHHHHHHHHHHcCCCCChhhHH--HHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHH--HHHHHHHcC
Q 047359 228 KALSKEGRVKEAIQIYHLISERGITVRDSDYY--AFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELS--RFVASQCGK 303 (440)
Q Consensus 228 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~ 303 (440)
.+|.-.++ +++.+.+..+....-. ...... ++...+.-.|+.+....++..+.+.. +..... .+.-++...
T Consensus 463 la~~GS~~-eev~e~L~~~L~dd~~-~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~ 537 (963)
T 4ady_A 463 LAAMGSAN-IEVYEALKEVLYNDSA-TSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINY 537 (963)
T ss_dssp HHSTTCCC-HHHHHHHHHHHHTCCH-HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTT
T ss_pred HHhcCCCC-HHHHHHHHHHHhcCCH-HHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhC
Confidence 22233333 3455555555543211 111122 23333456677777777777766532 222333 333334466
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhhhH--HHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHH
Q 047359 304 GKWKEVEELLSAVLDKGLLLDSFCCS--SLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVR 381 (440)
Q Consensus 304 ~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 381 (440)
|+.+.+..+++.+... ..|....-. .+.-+|+..|+.....+++..+.+. ...+......+.-++...|+.+.+.+
T Consensus 538 g~~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~r 615 (963)
T 4ady_A 538 GRQELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVPR 615 (963)
T ss_dssp TCGGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHHH
T ss_pred CChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHHH
Confidence 8888888888877653 122222222 2334567778877777788887764 22233333344445555677666667
Q ss_pred HHHHHHHcCCCchhhHHHHHHHH--HhcccH-HHHHHHHHHHHH
Q 047359 382 IFDYMKELKVVSSSSFVIVVSRL--CHLKEL-RKAMKNHDEMLK 422 (440)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~-~~a~~~~~~m~~ 422 (440)
+++.+.+.+ ++.+-.....++ ...|.. .+++.++..+..
T Consensus 616 lv~~L~~~~--d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 616 IVQLLSKSH--NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp HTTTGGGCS--CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHHhcC--CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 766555433 333333333333 333332 567778887764
No 243
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=94.48 E-value=0.75 Score=46.73 Aligned_cols=83 Identities=19% Similarity=0.061 Sum_probs=50.1
Q ss_pred chHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCH----HhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 047359 187 GNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQD----DTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFV 262 (440)
Q Consensus 187 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 262 (440)
-|..++..+.+.+.++.+.++-....+....-+. ..|..+.+.+...|++++|...+-.+.....+ ......++
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~LV 978 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDFV 978 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHHH
Confidence 4556667777777777777666655543221111 24666777777778888777777776654432 34555566
Q ss_pred HHHHhcCCh
Q 047359 263 NVLCKEHQP 271 (440)
Q Consensus 263 ~~~~~~~~~ 271 (440)
..++..|..
T Consensus 979 ~~lce~~~~ 987 (1139)
T 4fhn_B 979 NQLTKQGKI 987 (1139)
T ss_dssp HHHHHHCCH
T ss_pred HHHHhCCCh
Confidence 666555543
No 244
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.09 E-value=0.63 Score=44.23 Aligned_cols=52 Identities=13% Similarity=0.148 Sum_probs=30.1
Q ss_pred HHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHH
Q 047359 334 YYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYM 386 (440)
Q Consensus 334 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 386 (440)
.+...|+++.|+++-++....-+. +-.+|..|..+|...|+++.|+-.+..+
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~aPs-eF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTELALD-SFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHhccCcHHHHHHHHHHHHhcCch-hhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 344556666666666666554222 3456666666666666666666655544
No 245
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=93.68 E-value=4.5 Score=37.68 Aligned_cols=115 Identities=9% Similarity=-0.029 Sum_probs=59.5
Q ss_pred ChHHHHHHHHHHHHcCCCCChhh----HHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHH
Q 047359 270 QPEEVCGLLRDVVERGYIPCAME----LSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAI 345 (440)
Q Consensus 270 ~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 345 (440)
+++.|...+....+... .+... ...+.......+...++...+....... ++.....-.+....+.|+++.|.
T Consensus 229 d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp CHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHH
Confidence 66777777777654331 12222 1222222333342445555555544332 22222333444445667777777
Q ss_pred HHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 047359 346 ALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKE 388 (440)
Q Consensus 346 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 388 (440)
..|+.|...... .....--+..++...|+.++|..+|+.+..
T Consensus 306 ~~~~~l~~~~~~-~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 306 TWLARLPMEAKE-KDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHSCTTGGG-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHccccccc-cHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 777766543211 233334455566677777777777777764
No 246
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.39 E-value=4.1 Score=36.28 Aligned_cols=189 Identities=11% Similarity=0.059 Sum_probs=114.7
Q ss_pred cCcHHHHHHHHHHHHhc-----CCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH----hc
Q 047359 198 MGKTYAAEMIFKRACDE-----KIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLC----KE 268 (440)
Q Consensus 198 ~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~ 268 (440)
.|+++.|.+.+..+.+. +..........++..|...|+++...+.+..+...... .......+++.+. ..
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~q-lk~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQ-LKLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTT-SHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcC
Confidence 37888888887766542 23345667788889999999999888877766554222 1223334443332 23
Q ss_pred CChHHHHH--HHHHHHHcCCCCC--------hhhHHHHHHHHHcCCCHHHHHHHHHHHHhc--CCCCc---hhhhHHHHH
Q 047359 269 HQPEEVCG--LLRDVVERGYIPC--------AMELSRFVASQCGKGKWKEVEELLSAVLDK--GLLLD---SFCCSSLME 333 (440)
Q Consensus 269 ~~~~~a~~--~~~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~ 333 (440)
...+.... +.+... .+... ......|...+...|++.+|..++..+... +.... ...+...++
T Consensus 108 ~~~d~~~~~~~i~~l~--~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~r 185 (445)
T 4b4t_P 108 KSLDLNTRISVIETIR--VVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQME 185 (445)
T ss_dssp CTTHHHHHHHHHHCCS--SSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHH--HHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 33222111 111111 11111 122345677788889999999999888643 22211 235666677
Q ss_pred HHHcCCcHHHHHHHHHHHHhc----cCCcC--HHhHHHHHHHHHhcCcHHHHHHHHHHHHHc
Q 047359 334 YYCSNRQIDKAIALHIKIEKL----KGSLD--VATYDVLLDGLFKDGRMEEAVRIFDYMKEL 389 (440)
Q Consensus 334 ~~~~~~~~~~a~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 389 (440)
.|...+++.+|..+++++... ...|+ ...+...+..+...+++.+|.+.|.++.+.
T Consensus 186 l~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 186 LSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 888889999998888887531 12222 234566677777888888888887777653
No 247
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.53 E-value=0.51 Score=41.21 Aligned_cols=57 Identities=12% Similarity=0.038 Sum_probs=28.8
Q ss_pred HHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhcc
Q 047359 51 NALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSGKFEVVLGLLDSG 108 (440)
Q Consensus 51 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 108 (440)
..++..+...|+++++...+..+.... +-+...+..+|.++.+.|+..+|++.|+..
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344444555555555555555554432 224445555555555555555555555443
No 248
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=92.39 E-value=2.1 Score=30.27 Aligned_cols=74 Identities=15% Similarity=-0.026 Sum_probs=47.2
Q ss_pred CCchhhhHHHHHHHHcCCc---HHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchh
Q 047359 322 LLDSFCCSSLMEYYCSNRQ---IDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSS 395 (440)
Q Consensus 322 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 395 (440)
.|+..+--.+..++.+..+ ..+++.+++.+.+.+..-....+-.|.-++.+.|++++|.+..+.+.+..|.+..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~Q 113 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 113 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHH
Confidence 3455544445555555543 4467777777776543223455666777788888888888888888877776443
No 249
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=92.02 E-value=6.4 Score=40.06 Aligned_cols=21 Identities=14% Similarity=0.050 Sum_probs=11.7
Q ss_pred HHHHHHhcCChHHHHHHHhcc
Q 047359 88 VAQILCRSGKFEVVLGLLDSG 108 (440)
Q Consensus 88 l~~~~~~~~~~~~a~~~~~~~ 108 (440)
+..++...|++++|.+.|.+.
T Consensus 848 ~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 848 KALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp HHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHhcCCHHHHHHHHHHH
Confidence 444555556666666666553
No 250
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=91.92 E-value=5.8 Score=34.44 Aligned_cols=95 Identities=7% Similarity=-0.064 Sum_probs=51.2
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhcCCC---CcccccchHHHHHHHhhcCcHHHHHHHHHHHHhc--CCCCCHHhHHHH-
Q 047359 153 SILDGARRYEKTEVSDRIVGLMVEKKLL---PKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDE--KIELQDDTCGCM- 226 (440)
Q Consensus 153 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l- 226 (440)
.++..|...|++.+|.+++..+.+.-.. +......+..-++.|...+++.++...+...... .+.+++.+...+
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 4566666677777776666666553111 1112334555566677777777777777665432 122333322211
Q ss_pred ---HHHHh-hhccHHHHHHHHHHHH
Q 047359 227 ---LKALS-KEGRVKEAIQIYHLIS 247 (440)
Q Consensus 227 ---~~~~~-~~~~~~~a~~~~~~~~ 247 (440)
...+. ..+++..|...|-+..
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHH
Confidence 22334 5677777777665543
No 251
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=90.89 E-value=2.4 Score=31.36 Aligned_cols=70 Identities=14% Similarity=0.126 Sum_probs=43.2
Q ss_pred CCCCCChHh--HHHHHHHHHccCCcchHHHHHHHHHhcC-CccCh-------HhHHHHHHHHHhccchhHHHHHHHHHHH
Q 047359 6 EGRDSQSDA--LSLVLDCYSHKGLFMDGLEVYRMMRVYG-FVPAV-------SACNALLDALYRQNEIRLASCLYGAMVR 75 (440)
Q Consensus 6 ~g~~~~~~~--~~~li~~~~~~~~~~~A~~~~~~~~~~~-~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 75 (440)
+|.-|.-.. +-.-++.+...|.++.|.-+.+.+.... ..|+. .++..+.+++...|++..|...|++.++
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 455454433 3344677888899999988888765421 12331 2566677888899999999999998643
No 252
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=89.90 E-value=0.89 Score=36.68 Aligned_cols=59 Identities=22% Similarity=0.165 Sum_probs=45.6
Q ss_pred HHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCC
Q 047359 333 EYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVV 392 (440)
Q Consensus 333 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 392 (440)
....+.|++++|++....-++..+. |...-..|+..++-.|+++.|.+-++...+.+|.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~ 63 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 63 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence 3456778888888888877776554 6677777888888888888888888888887766
No 253
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=89.89 E-value=3.3 Score=31.72 Aligned_cols=56 Identities=9% Similarity=-0.087 Sum_probs=39.1
Q ss_pred CCcHHHHHHHHHHHHhccCCc-CHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCc
Q 047359 338 NRQIDKAIALHIKIEKLKGSL-DVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVS 393 (440)
Q Consensus 338 ~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 393 (440)
.+....+.++|..|...|+-- -...|......+...|++++|.++|+.-.+.+..+
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 344667778888887776643 34566777777778888888888888777765444
No 254
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=89.80 E-value=3.1 Score=27.63 Aligned_cols=63 Identities=21% Similarity=0.186 Sum_probs=37.7
Q ss_pred CcchHHHHHHHHHhcCCccChHhHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHH
Q 047359 27 LFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQ 90 (440)
Q Consensus 27 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 90 (440)
+.-+..+-++.+......|++....+.+++|-+.+++..|..+|+-.+.+- .+...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 344555556666666666777777777777777777777777777664432 222344555543
No 255
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=89.74 E-value=8 Score=32.28 Aligned_cols=25 Identities=8% Similarity=0.054 Sum_probs=17.1
Q ss_pred chhhhHHHHHHHHcCCcHHHHHHHH
Q 047359 324 DSFCCSSLMEYYCSNRQIDKAIALH 348 (440)
Q Consensus 324 ~~~~~~~l~~~~~~~~~~~~a~~~~ 348 (440)
++.....+...|.+.|++.+|...|
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 5556666777777777777776655
No 256
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=89.68 E-value=4.9 Score=29.71 Aligned_cols=114 Identities=11% Similarity=-0.031 Sum_probs=56.6
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhcC-CCCch-------hhhHHHHHHHHcCCcHHHHHHHHHHHHhcc-CCc-CHHhHH
Q 047359 295 RFVASQCGKGKWKEVEELLSAVLDKG-LLLDS-------FCCSSLMEYYCSNRQIDKAIALHIKIEKLK-GSL-DVATYD 364 (440)
Q Consensus 295 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p-~~~~~~ 364 (440)
.-++.+...+.++.|+-+.+.+.... ..|+. .++..+..++...+++.+|...|++.++.. .-+ +..+..
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~ 104 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRP 104 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 33455556677777766666544321 12221 134455566667777777777777654321 101 111110
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcccHHHHHHHHHHH
Q 047359 365 VLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLKELRKAMKNHDEM 420 (440)
Q Consensus 365 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 420 (440)
.+. ....... ...-+.+.+.-..+..+|.+.|++++|+.+++..
T Consensus 105 ~~~----~~ss~p~--------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 105 STG----NSASTPQ--------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp ------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred ccc----ccCCCcc--------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 110 0000000 0000113456667889999999999999998764
No 257
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=89.62 E-value=9.7 Score=33.08 Aligned_cols=241 Identities=9% Similarity=-0.019 Sum_probs=135.6
Q ss_pred ccchHHHHHHHhhcCcHHHHHHHHHHHHhcCC-CC---CHHhHHHHHHHHhhh-ccHHHHHHHHHHHHHcCCCCChhhH-
Q 047359 185 LSGNDYVIQKLSDMGKTYAAEMIFKRACDEKI-EL---QDDTCGCMLKALSKE-GRVKEAIQIYHLISERGITVRDSDY- 258 (440)
Q Consensus 185 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~---~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~- 258 (440)
......+...|.+.|+.++..+++......-. -| .......++..+... +..+.-.++..+..+..-. +..+|
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~r~fl 97 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ-EKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 56677889999999999999999987754311 11 223466777777764 3344444555444432111 22334
Q ss_pred -----HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-----hhHHHHHHHHHcCCCHHHHHHHHHHHHhc--CCCCchh
Q 047359 259 -----YAFVNVLCKEHQPEEVCGLLRDVVERGYIPCA-----MELSRFVASQCGKGKWKEVEELLSAVLDK--GLLLDSF 326 (440)
Q Consensus 259 -----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~ 326 (440)
..++..|...|++.+|.+++..+.+.=-..|. ..+..-++.|...+++.++...+...... .+.+++.
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~ 177 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPK 177 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHH
Confidence 25788899999999999999888764112221 23555667788889999999999887542 2223333
Q ss_pred hhHHH----HHHHH-cCCcHHHHHHHHHHHHhccCC---c---CHHhHHHHHHHHHhcCcHHHHHHHHH-HHHHcCCC-c
Q 047359 327 CCSSL----MEYYC-SNRQIDKAIALHIKIEKLKGS---L---DVATYDVLLDGLFKDGRMEEAVRIFD-YMKELKVV-S 393 (440)
Q Consensus 327 ~~~~l----~~~~~-~~~~~~~a~~~~~~~~~~~~~---p---~~~~~~~l~~~~~~~g~~~~a~~~~~-~~~~~~~~-~ 393 (440)
.-..+ ...+. ..+++..|...|-+..+.-.. | +...|..|. +.. .++..+...++. +....-.. .
T Consensus 178 i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~-aLl-~~~r~el~~~l~~~~~~~~~~pe 255 (394)
T 3txn_A 178 VQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLC-KIM-LGQSDDVNQLVSGKLAITYSGRD 255 (394)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-HHH-TTCGGGHHHHHHSHHHHTTCSHH
T ss_pred HHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHH-HHH-cCCHHHHHHHhccccccccCCcc
Confidence 22211 22355 789999998888776532111 1 112232222 222 233222223222 21111111 2
Q ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHCCCCCCHH
Q 047359 394 SSSFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDEA 430 (440)
Q Consensus 394 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 430 (440)
...+..++.+ ...+++.+...+++.... .+..|..
T Consensus 256 i~~l~~L~~a-~~~~dl~~f~~iL~~~~~-~l~~D~~ 290 (394)
T 3txn_A 256 IDAMKSVAEA-SHKRSLADFQAALKEYKK-ELAEDVI 290 (394)
T ss_dssp HHHHHHHHHH-HHTTCHHHHHHHHHHSTT-TTTTSHH
T ss_pred HHHHHHHHHH-HHhCCHHHHHHHHHHHHH-HHhcChH
Confidence 2334455554 456677777777766543 2445554
No 258
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.40 E-value=3.8 Score=36.27 Aligned_cols=100 Identities=5% Similarity=-0.098 Sum_probs=64.9
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCcccccchHHHHHHHhhcCcHHHHHHHHHHHHhc---CCCCCHHh--HH
Q 047359 150 TYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDE---KIELQDDT--CG 224 (440)
Q Consensus 150 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~--~~ 224 (440)
+...+...+.+.|+++.|.+.+.++......+.+-...+..+++.+...+++..+...+.++... +..|+... ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 56677778888888888888888887754444444667777788888888888888888776542 22222211 11
Q ss_pred HHHHHHhhhccHHHHHHHHHHHHHc
Q 047359 225 CMLKALSKEGRVKEAIQIYHLISER 249 (440)
Q Consensus 225 ~l~~~~~~~~~~~~a~~~~~~~~~~ 249 (440)
.-...+...+++..|-..|-+....
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 1122334567888888877776554
No 259
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=88.79 E-value=5.1 Score=28.73 Aligned_cols=73 Identities=15% Similarity=-0.027 Sum_probs=45.6
Q ss_pred CCchhhhHHHHHHHHcCCc---HHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCch
Q 047359 322 LLDSFCCSSLMEYYCSNRQ---IDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSS 394 (440)
Q Consensus 322 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 394 (440)
.|+..+--.+..++.+..+ ..+++.+++.+.+.+..-.....-.|.-++.+.|++++|.+..+.+.+..|.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~ 111 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 111 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH
Confidence 3455544445555555543 446677777777654332444555666677788888888888888877776644
No 260
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=88.66 E-value=3.9 Score=27.20 Aligned_cols=45 Identities=7% Similarity=0.098 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHH
Q 047359 308 EVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIE 352 (440)
Q Consensus 308 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 352 (440)
+..+-++.+....+-|++.+....+++|-+.+++..|.++++-++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK 72 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 72 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444443
No 261
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=87.96 E-value=5.5 Score=28.13 Aligned_cols=57 Identities=14% Similarity=0.088 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhccc----CCchhHHHHHH
Q 047359 64 RLASCLYGAMVRDGVSPNKFTWSLVAQILCRSGKFEVVLGLLDSGI----YSSVMYNLVID 120 (440)
Q Consensus 64 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~li~ 120 (440)
=+..+-++.+...++.|++......+++|.+.+|+..|.++|+-++ +...+|..++.
T Consensus 70 wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lq 130 (152)
T 2y69_E 70 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHH
Confidence 3456666666667778888888888888888888888888888776 44445766663
No 262
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=87.00 E-value=4.4 Score=26.79 Aligned_cols=54 Identities=11% Similarity=0.002 Sum_probs=23.6
Q ss_pred chhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhccc-CCchhHHH
Q 047359 62 EIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSGKFEVVLGLLDSGI-YSSVMYNL 117 (440)
Q Consensus 62 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~ 117 (440)
..++|..+-+.+...|. ...+-..-+..+...|++++|..+.+... ||...|..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~A 76 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLA 76 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHH
Confidence 35566666666655432 11111112223444455555555544444 44444433
No 263
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=86.86 E-value=3.9 Score=33.02 Aligned_cols=118 Identities=14% Similarity=0.095 Sum_probs=77.5
Q ss_pred HHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCC--cCHHhHHHHHHHHHhcCc
Q 047359 298 ASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGS--LDVATYDVLLDGLFKDGR 375 (440)
Q Consensus 298 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~ 375 (440)
....+.|+++++++....-.+..+. |...-..+++.+|-.|++++|.+-++...+.... |....|..+|.+-...
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~~R-- 81 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQAR-- 81 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH--
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHH--
Confidence 4566789999999999988888665 8888889999999999999999999988875332 2223444444431100
Q ss_pred HHHHHHHHHHHHHcCCC--chhhHHHHHHHHH--hcccHHHHHHHHHHHHH
Q 047359 376 MEEAVRIFDYMKELKVV--SSSSFVIVVSRLC--HLKELRKAMKNHDEMLK 422 (440)
Q Consensus 376 ~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~--~~g~~~~a~~~~~~m~~ 422 (440)
.++|.--..-+.. ++.-...++.+.. ..|+.++|..+-.++.+
T Consensus 82 ----~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e 128 (273)
T 1zbp_A 82 ----KDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 128 (273)
T ss_dssp ----HHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ----HHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Confidence 0111111111111 3334445555554 56999999999888865
No 264
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=85.91 E-value=6.7 Score=28.54 Aligned_cols=49 Identities=16% Similarity=0.217 Sum_probs=24.9
Q ss_pred HHHHHHHHHHcCCC--chhhHHHHHHHHHhcccHHHHHHHHHHHHHCCCCC
Q 047359 379 AVRIFDYMKELKVV--SSSSFVIVVSRLCHLKELRKAMKNHDEMLKMGHKP 427 (440)
Q Consensus 379 a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p 427 (440)
+..+|..|..+++. -...|......+...|++++|.++|+.-++.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 44555555554444 33444445555555555555555555555544444
No 265
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=85.50 E-value=8 Score=29.67 Aligned_cols=55 Identities=11% Similarity=0.035 Sum_probs=39.3
Q ss_pred ChhhHHHHHHHHHhcCCCCcccccchHHHHHHHhhcCcHHHHHHHHHHHHhcCCCC
Q 047359 163 KTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIEL 218 (440)
Q Consensus 163 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 218 (440)
....+..+|..|...|+-... ...|......+...|++.+|.++|+.-.+.+-.|
T Consensus 94 ~~~~p~~if~~L~~~~IG~~~-AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 94 NFHESENTFKYMFNKGIGTKL-SLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp CHHHHHHHHHHHHHHTSSTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccCCHHHHHHHHHHCCCcHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 355778888888887765553 5566677777777788888888777777766665
No 266
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=85.37 E-value=16 Score=30.83 Aligned_cols=82 Identities=10% Similarity=-0.008 Sum_probs=43.9
Q ss_pred CchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHH
Q 047359 323 LDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVS 402 (440)
Q Consensus 323 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 402 (440)
-++.....+...|.+.+++.+|...|- .|-.+....+..++.-+...+...+ ........+-
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~~~~~~~e--------------~dlfiaRaVL 195 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEWYKQDESHT--------------APLYCARAVL 195 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHHHHTSCGGG--------------HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHHHHhcCCcc--------------HHHHHHHHHH
Confidence 356666677778888888888877662 2333333555444444433332111 1112222333
Q ss_pred HHHhcccHHHHHHHHHHHHH
Q 047359 403 RLCHLKELRKAMKNHDEMLK 422 (440)
Q Consensus 403 ~~~~~g~~~~a~~~~~~m~~ 422 (440)
-|.-.++...|..+++.+.+
T Consensus 196 ~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 196 PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHH
Confidence 45566777777776666553
No 267
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=85.22 E-value=4.2 Score=26.85 Aligned_cols=73 Identities=15% Similarity=0.075 Sum_probs=32.8
Q ss_pred chhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhccc-CCchhHHHHHHHHHhcCChhHHHHHHHHH
Q 047359 62 EIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSGKFEVVLGLLDSGI-YSSVMYNLVIDFYSKKGDFGAAFDRLNEM 138 (440)
Q Consensus 62 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 138 (440)
..++|..+-+.+...|. ...+-..-+..+...|++++|..+.+... ||...|..|- -.+.|..+++..-+.++
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALc--e~rlGl~s~le~rL~~l 94 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALC--EWHLGLGAALDRRLAGL 94 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHH--HHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHH--HHhcccHHHHHHHHHHH
Confidence 35666666666655432 11111122233445555555555555544 4444444332 22344444444444344
No 268
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=84.95 E-value=14 Score=29.92 Aligned_cols=21 Identities=10% Similarity=0.126 Sum_probs=9.8
Q ss_pred cCChHHHHHHHHHHHHcCCCC
Q 047359 268 EHQPEEVCGLLRDVVERGYIP 288 (440)
Q Consensus 268 ~~~~~~a~~~~~~~~~~~~~~ 288 (440)
.+.......+++.+.+.|..+
T Consensus 192 ~~~~~~~~~i~~~Ll~~g~~~ 212 (285)
T 1wdy_A 192 SSDDSDVEAITHLLLDHGADV 212 (285)
T ss_dssp CSCTTTHHHHHHHHHHTTCCS
T ss_pred ccccchHHHHHHHHHHcCCCC
Confidence 344444444555555554433
No 269
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=84.25 E-value=33 Score=33.68 Aligned_cols=24 Identities=8% Similarity=0.164 Sum_probs=14.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcc
Q 047359 85 WSLVAQILCRSGKFEVVLGLLDSG 108 (440)
Q Consensus 85 ~~~l~~~~~~~~~~~~a~~~~~~~ 108 (440)
|..++++..+.++.+.+.++|.++
T Consensus 233 y~~a~~~ai~LnD~~li~~if~~l 256 (963)
T 4ady_A 233 YLTLNKVVVNLNDAGLALQLFKKL 256 (963)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444555556666666666666664
No 270
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=83.53 E-value=9.7 Score=26.93 Aligned_cols=46 Identities=15% Similarity=0.050 Sum_probs=23.5
Q ss_pred HHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHc
Q 047359 344 AIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKEL 389 (440)
Q Consensus 344 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 389 (440)
..+-++.+....+.|++......+.+|.+.+|+..|.++|+-++.+
T Consensus 72 lrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K 117 (152)
T 2y69_E 72 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 117 (152)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 3333444444444555555555555555555555555555555433
No 271
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=83.28 E-value=9.9 Score=28.09 Aligned_cols=53 Identities=9% Similarity=-0.016 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhccCCc-CHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchh
Q 047359 343 KAIALHIKIEKLKGSL-DVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSS 395 (440)
Q Consensus 343 ~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 395 (440)
.+.++|..|...|+-. -...|......+...|++.+|.++|+.-.+.+..+..
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 3556677777666532 3345566666666777777777777777766544443
No 272
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=83.19 E-value=14 Score=29.93 Aligned_cols=15 Identities=7% Similarity=-0.035 Sum_probs=6.5
Q ss_pred HHHHHHHHHhccCCc
Q 047359 344 AIALHIKIEKLKGSL 358 (440)
Q Consensus 344 a~~~~~~~~~~~~~p 358 (440)
..++.+.+.+.|..+
T Consensus 198 ~~~i~~~Ll~~g~~~ 212 (285)
T 1wdy_A 198 VEAITHLLLDHGADV 212 (285)
T ss_dssp HHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHcCCCC
Confidence 334444444444433
No 273
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.00 E-value=24 Score=31.13 Aligned_cols=100 Identities=10% Similarity=-0.039 Sum_probs=70.9
Q ss_pred ccchHHHHHHHhhcCcHHHHHHHHHHHHhcCCC--CCHHhHHHHHHHHhhhccHHHHHHHHHHHHHc---CCCCChhhH-
Q 047359 185 LSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIE--LQDDTCGCMLKALSKEGRVKEAIQIYHLISER---GITVRDSDY- 258 (440)
Q Consensus 185 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~- 258 (440)
..+...+...|.+.|+++.|.+.+.++...... .-...+-..+..+...+++..+...+.+.... +..|+....
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~l 210 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRY 210 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence 557888999999999999999999999875332 23456777888999999999999999887543 322222111
Q ss_pred -HHHHHHHHhcCChHHHHHHHHHHHHc
Q 047359 259 -YAFVNVLCKEHQPEEVCGLLRDVVER 284 (440)
Q Consensus 259 -~~l~~~~~~~~~~~~a~~~~~~~~~~ 284 (440)
..-...+...+++..|...|-+....
T Consensus 211 k~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 211 KTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 11112234578898888888776543
No 274
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=80.71 E-value=26 Score=29.92 Aligned_cols=75 Identities=7% Similarity=0.005 Sum_probs=37.8
Q ss_pred cchHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhcc--HHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 047359 186 SGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGR--VKEAIQIYHLISERGITVRDSDYYAFVN 263 (440)
Q Consensus 186 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 263 (440)
.....++.-|...++.++|...++++..... .......++..-...++ -+.+-.++..+.. ++-+.......+..
T Consensus 55 k~~~~ii~EYf~~~d~~Ea~~~l~eL~~p~~--~~~~v~~~I~~aLdr~~~erE~~s~LLs~L~~-~~ls~~~i~~gf~~ 131 (358)
T 3eiq_C 55 KTLTPIIQEYFEHGDTNEVAEMLRDLNLGEM--KSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTNDVEKSFDK 131 (358)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHTTTCCGG--GGGHHHHHHHHHTTSCHHHHHHHHHHHHTTTT-TSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHhCCchh--HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHh-CCCCHHHHHHHHHH
Confidence 3456677778888888888888877643221 22233333333222222 2334455555553 44434433333333
No 275
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=80.06 E-value=15 Score=26.74 Aligned_cols=53 Identities=9% Similarity=0.026 Sum_probs=32.2
Q ss_pred hhHHHHHHHHHhcCCCCcccccchHHHHHHHhhcCcHHHHHHHHHHHHhcCCCC
Q 047359 165 EVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIEL 218 (440)
Q Consensus 165 ~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 218 (440)
+.+..+|..|...|+-... ...|......+...|++.+|.++|+.-.+.+-.|
T Consensus 82 ~dp~~if~~L~~~~IG~~~-AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLS-SPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CCHHHHHHHHHHCCCcHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3466677777666654442 4455556666666666666666666666655554
No 276
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=77.61 E-value=17 Score=28.47 Aligned_cols=11 Identities=0% Similarity=-0.203 Sum_probs=4.3
Q ss_pred HcCCcHHHHHH
Q 047359 336 CSNRQIDKAIA 346 (440)
Q Consensus 336 ~~~~~~~~a~~ 346 (440)
.+.|+.+-+..
T Consensus 218 ~~~~~~~~v~~ 228 (240)
T 3eu9_A 218 KQRKNVWMINH 228 (240)
T ss_dssp HHTTCHHHHHH
T ss_pred HHcCcHHHHHH
Confidence 33444443333
No 277
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=77.38 E-value=30 Score=28.83 Aligned_cols=25 Identities=8% Similarity=-0.149 Sum_probs=13.7
Q ss_pred ChhhHHHHHHHHHcCCCHHHHHHHH
Q 047359 289 CAMELSRFVASQCGKGKWKEVEELL 313 (440)
Q Consensus 289 ~~~~~~~l~~~~~~~~~~~~a~~~~ 313 (440)
+......+...|.+.|++.+|+..|
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 3344555555566666666655544
No 278
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=76.53 E-value=25 Score=28.75 Aligned_cols=145 Identities=8% Similarity=-0.092 Sum_probs=67.3
Q ss_pred HHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCCh---hhHHHHHHHHHh
Q 047359 191 VIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRD---SDYYAFVNVLCK 267 (440)
Q Consensus 191 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~ 267 (440)
.+...+..|+.+-+..+++. |..++...-.+.+...+..|+.+-+ +.+.+.|..++. .-.+. +...+.
T Consensus 34 ~L~~A~~~g~~~~v~~Ll~~----g~~~~~~~g~t~L~~A~~~g~~~~v----~~Ll~~ga~~~~~d~~g~t~-L~~A~~ 104 (285)
T 3kea_A 34 ASYYAIADNNVRLVCTLLNA----GALKNLLENEFPLHQAATLEDTKIV----KILLFSGLDDSQFDDKGNTA-LYYAVD 104 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHT----TGGGSCCTTCCHHHHHTTSSSCHHH----HHHHHTTCCTTCCCTTSCCH-HHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHhC----CCCCCCCCCCCHHHHHHHcCCHHHH----HHHHHCCCCCCCcCCCCCcH-HHHHHH
Confidence 45556667777766655544 3333222112334445556665544 334445554432 12222 333445
Q ss_pred cCChHHHHHHHHHHHHcCCCCChh---hHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchh-hhHHHHHHHHcCCcHHH
Q 047359 268 EHQPEEVCGLLRDVVERGYIPCAM---ELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSF-CCSSLMEYYCSNRQIDK 343 (440)
Q Consensus 268 ~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~ 343 (440)
.|+.+-+..+++ .|..++.. -+.+.+...+..|+.+-+.. +.+.|..+... .-.+.+...+..|+.+-
T Consensus 105 ~g~~~~v~~Ll~----~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~----Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~ 176 (285)
T 3kea_A 105 SGNMQTVKLFVK----KNWRLMFYGKTGWKTSFYHAVMLNDVSIVSY----FLSEIPSTFDLAILLSCIHITIKNGHVDM 176 (285)
T ss_dssp TTCHHHHHHHHH----HCGGGGGCSSSGGGSHHHHHHHTTCHHHHHH----HHTTSCTTCCCSTHHHHHHHHHHTTCHHH
T ss_pred cCCHHHHHHHHh----cCCCCCccCCCCCCCHHHHHHHcCCHHHHHH----HHhCCCccccccCCccHHHHHHHcChHHH
Confidence 566554444433 34433322 21233444455566554433 34444333221 33344555566777766
Q ss_pred HHHHHHHHH
Q 047359 344 AIALHIKIE 352 (440)
Q Consensus 344 a~~~~~~~~ 352 (440)
+.-+++.-.
T Consensus 177 v~~Ll~~ga 185 (285)
T 3kea_A 177 MILLLDYMT 185 (285)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHcCC
Confidence 655555433
No 279
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=75.39 E-value=42 Score=29.44 Aligned_cols=334 Identities=16% Similarity=0.138 Sum_probs=152.5
Q ss_pred HHHHHHhccchhHHHHHHHHHHHcCCCCChhh--HHHHHHHHHhcCChHHHHHHHhccc----CCchhHHHHHHHHHhcC
Q 047359 53 LLDALYRQNEIRLASCLYGAMVRDGVSPNKFT--WSLVAQILCRSGKFEVVLGLLDSGI----YSSVMYNLVIDFYSKKG 126 (440)
Q Consensus 53 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~li~~~~~~~ 126 (440)
.+...+..|+.+-+..+ .+.|..|+... ....+...+..|+.+-+..+++.-. .+.... +.+...+..|
T Consensus 17 ~L~~Aa~~g~~~~v~~L----l~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~-t~L~~A~~~g 91 (437)
T 1n11_A 17 PLHVASFMGHLPIVKNL----LQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQ-TPLHCAARIG 91 (437)
T ss_dssp HHHHHHHHTCHHHHHHH----HHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSC-CHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHH----HHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCC-CHHHHHHHCC
Confidence 44455667776654444 45565554321 2234555667888888888877643 222222 3344455667
Q ss_pred ChhHHHHHHHHHhcCCCCCCc---hhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCcccccchHHHHHHHhhcCcHHH
Q 047359 127 DFGAAFDRLNEMCNGRNLTPG---FSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYA 203 (440)
Q Consensus 127 ~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 203 (440)
+.+-+.-+++. |..|+ ....+. +...+..|+.+.+..++ +.+..++.....-...+...+..|+.+-
T Consensus 92 ~~~~v~~Ll~~-----ga~~~~~~~~g~t~-L~~A~~~g~~~~v~~Ll----~~~~~~~~~~~~g~t~L~~A~~~g~~~~ 161 (437)
T 1n11_A 92 HTNMVKLLLEN-----NANPNLATTAGHTP-LHIAAREGHVETVLALL----EKEASQACMTKKGFTPLHVAAKYGKVRV 161 (437)
T ss_dssp CHHHHHHHHHH-----TCCTTCCCTTCCCH-HHHHHHHTCHHHHHHHH----HTTCCSCCCCTTSCCHHHHHHHTTCHHH
T ss_pred CHHHHHHHHhC-----CCCCCCCCCCCCcH-HHHHHHcCCHHHHHHHH----hCCCCCcCCCCCCCCHHHHHHHcCCHHH
Confidence 76544444443 33332 222223 33345667766554444 4443332101111224555666777765
Q ss_pred HHHHHHHHHhcCCCCCHHh--HHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhH--HHHHHHHHhcCChHHHHHHHH
Q 047359 204 AEMIFKRACDEKIELQDDT--CGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDY--YAFVNVLCKEHQPEEVCGLLR 279 (440)
Q Consensus 204 a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~ 279 (440)
+..++ +.+..++... -.+.+...+..|+.+ +.+.+.+.|..++...+ ...+...+..|+.+-+..+
T Consensus 162 v~~Ll----~~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~L-- 231 (437)
T 1n11_A 162 AELLL----ERDAHPNAAGKNGLTPLHVAVHHNNLD----IVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSL-- 231 (437)
T ss_dssp HHHHH----HTTCCTTCCCSSCCCHHHHHHHTTCHH----HHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHH--
T ss_pred HHHHH----hCCCCCCCCCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHH--
Confidence 54444 3444333211 112233444556654 44445555544433211 1233344566666544444
Q ss_pred HHHHcCCCCCh---hhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCch---hhhHHHHHHHHcCCcHHHHHHHHHHHHh
Q 047359 280 DVVERGYIPCA---MELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDS---FCCSSLMEYYCSNRQIDKAIALHIKIEK 353 (440)
Q Consensus 280 ~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 353 (440)
.+.|..++. ...+.+ ...+..|+.+-+..+ .+.+..++. .-.+. +...+..|+.+-+. .+.+
T Consensus 232 --l~~g~~~~~~~~~g~t~L-~~A~~~g~~~~v~~L----l~~~~~~~~~~~~g~t~-L~~A~~~~~~~~~~----~Ll~ 299 (437)
T 1n11_A 232 --LQYGGSANAESVQGVTPL-HLAAQEGHAEMVALL----LSKQANGNLGNKSGLTP-LHLVAQEGHVPVAD----VLIK 299 (437)
T ss_dssp --HHTTCCTTCCCTTCCCHH-HHHHHTTCHHHHHHH----HTTTCCTTCCCTTCCCH-HHHHHHHTCHHHHH----HHHH
T ss_pred --HHcCCCCCCCCCCCCCHH-HHHHHCCCHHHHHHH----HhcCCCCCCCCCCCCCH-HHHHHHcCCHHHHH----HHHh
Confidence 444433322 222233 334455666544433 344443332 22222 33344566655443 3444
Q ss_pred ccCCcCHH---hHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcccHHHHHHHHHHHHHCCCCCCH
Q 047359 354 LKGSLDVA---TYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDE 429 (440)
Q Consensus 354 ~~~~p~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 429 (440)
.|..++.. -.+. +...+..|+.+-+.-+++.-...+..+..-.+.+.. ..+.|.. ++.+.+++.|..|+.
T Consensus 300 ~g~~~~~~~~~g~t~-L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~-A~~~g~~----~iv~~Ll~~ga~~~~ 372 (437)
T 1n11_A 300 HGVMVDATTRMGYTP-LHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQ-AAQQGHT----DIVTLLLKNGASPNE 372 (437)
T ss_dssp HTCCTTCCCSSCCCH-HHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHH-HHHTTCH----HHHHHHHHTTCCSCC
T ss_pred CCccCCCCCCCCCCH-HHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHH-HHHCChH----HHHHHHHHCcCCCCC
Confidence 45443322 2223 333455677665544443211111112222233333 3345554 455556677877764
No 280
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=75.15 E-value=28 Score=27.27 Aligned_cols=20 Identities=15% Similarity=0.117 Sum_probs=9.5
Q ss_pred HhcCChhhHHHHHHHHHhcC
Q 047359 159 RRYEKTEVSDRIVGLMVEKK 178 (440)
Q Consensus 159 ~~~~~~~~a~~~~~~~~~~~ 178 (440)
+..|+.+.+..+++.+.+.+
T Consensus 17 ~~~g~~~~v~~Ll~~~~~~~ 36 (241)
T 1k1a_A 17 VVQGNLPAVHRLVNLFQQGG 36 (241)
T ss_dssp HHTTCHHHHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHHHHhcC
Confidence 34455555555554444443
No 281
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=75.02 E-value=23 Score=26.19 Aligned_cols=54 Identities=9% Similarity=-0.027 Sum_probs=35.3
Q ss_pred hhHHHHHHHHHhcCCCCcccccchHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCC
Q 047359 165 EVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQ 219 (440)
Q Consensus 165 ~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 219 (440)
+.+..+|..|...|+-... ...|......+-..|++.+|.++|..-.+.+-.|-
T Consensus 77 ~~p~~if~~L~~~~IG~~~-AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSL-AQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CCHHHHHHHHHHCCcchhh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 4466677777777655542 45566666666777777777777777766665553
No 282
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=74.37 E-value=38 Score=28.52 Aligned_cols=82 Identities=6% Similarity=-0.076 Sum_probs=44.1
Q ss_pred CCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHH
Q 047359 217 ELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRF 296 (440)
Q Consensus 217 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 296 (440)
.-|+.....+...|.+.+++.+|...|- .|-.++...+..++.-+...+...++ +...-.++
T Consensus 133 ~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~~~~~~~e~--------------dlfiaRaV 194 (336)
T 3lpz_A 133 AGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEWYKQDESHTA--------------PLYCARAV 194 (336)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHHHHTSCGGGH--------------HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHHHHhcCCccH--------------HHHHHHHH
Confidence 3456667777788888888888777662 12222334555555444443332221 22222222
Q ss_pred HHHHHcCCCHHHHHHHHHHHH
Q 047359 297 VASQCGKGKWKEVEELLSAVL 317 (440)
Q Consensus 297 ~~~~~~~~~~~~a~~~~~~~~ 317 (440)
+ .|...+++..|..+++...
T Consensus 195 L-~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 195 L-PYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp H-HHHHTTCHHHHHHHHHHHH
T ss_pred H-HHHHhCCHHHHHHHHHHHH
Confidence 3 3444577888877666554
No 283
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=72.51 E-value=21 Score=27.01 Aligned_cols=47 Identities=17% Similarity=0.172 Sum_probs=20.8
Q ss_pred HHhccchhHHHHHHHHHHHcCCCCChhh--HHHHHHHHHhcCChHHHHHHHhc
Q 047359 57 LYRQNEIRLASCLYGAMVRDGVSPNKFT--WSLVAQILCRSGKFEVVLGLLDS 107 (440)
Q Consensus 57 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~ 107 (440)
.++.|+.+ +++.+.+.|..++... -...+...+..|+.+-+..+++.
T Consensus 46 A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ 94 (201)
T 3hra_A 46 AVHNNDIE----IAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKH 94 (201)
T ss_dssp HHHHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHcCCHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 34455543 3444444554443221 11223333455666666655543
No 284
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=70.07 E-value=29 Score=27.52 Aligned_cols=87 Identities=14% Similarity=0.044 Sum_probs=48.9
Q ss_pred HHHHHHccCCcchHHHHHHHHHhc--CCcc----ChHhHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 047359 18 VLDCYSHKGLFMDGLEVYRMMRVY--GFVP----AVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQI 91 (440)
Q Consensus 18 li~~~~~~~~~~~A~~~~~~~~~~--~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 91 (440)
-++.+....++++|++++++..+. +.++ ........+..-.....-.-+..+.+.+.. .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHH
Confidence 467778888888888888876642 1111 112222333333444444455555555532 3445555566667
Q ss_pred HHhcCChHHHHHHHhc
Q 047359 92 LCRSGKFEVVLGLLDS 107 (440)
Q Consensus 92 ~~~~~~~~~a~~~~~~ 107 (440)
+.+.|+-++|.++|-+
T Consensus 101 L~rLg~~~~A~~lfL~ 116 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQ 116 (235)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHH
Confidence 7777777777766644
No 285
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=69.18 E-value=34 Score=25.78 Aligned_cols=12 Identities=17% Similarity=0.097 Sum_probs=5.1
Q ss_pred hcCChhHHHHHH
Q 047359 124 KKGDFGAAFDRL 135 (440)
Q Consensus 124 ~~~~~~~a~~~~ 135 (440)
..|+.+....++
T Consensus 14 ~~g~~~~v~~ll 25 (201)
T 3hra_A 14 NQRDTKKVKEIL 25 (201)
T ss_dssp HTTCHHHHHHHH
T ss_pred HhccHHHHHHHH
Confidence 344444444333
No 286
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=68.74 E-value=35 Score=26.66 Aligned_cols=52 Identities=13% Similarity=0.164 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHhccCCc-CHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCc
Q 047359 342 DKAIALHIKIEKLKGSL-DVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVS 393 (440)
Q Consensus 342 ~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 393 (440)
+.+..+|..|...|+-- -...|......+...|++.+|.++|+.-.+.+-.+
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 45666777777666532 34456666666777777777777777776655443
No 287
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=68.41 E-value=21 Score=25.14 Aligned_cols=67 Identities=12% Similarity=0.111 Sum_probs=43.0
Q ss_pred hhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCCch
Q 047359 327 CCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDG--RMEEAVRIFDYMKELKVVSS 394 (440)
Q Consensus 327 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~ 394 (440)
....++.-|...|+.++|.+.++++...... ...+...+..++-+.+ ..+.+..++..+...+.-+.
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 3467888888999999999999887532111 2234445555555543 24567777877777665533
No 288
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=67.50 E-value=27 Score=27.31 Aligned_cols=54 Identities=6% Similarity=0.044 Sum_probs=39.2
Q ss_pred hhhHHHHHHHHHhcCCCCcccccchHHHHHHHhhcCcHHHHHHHHHHHHhcCCCC
Q 047359 164 TEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIEL 218 (440)
Q Consensus 164 ~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 218 (440)
.+.+..+|..|...|+-... ...|......+...|++.+|..+|+.-.+.+-.|
T Consensus 130 ~~~p~~if~~L~~~~IG~~~-AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 130 IDEPVELFSFLAHHHIGQES-SIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp CSCHHHHHHHHHHTTCSTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred cCCHHHHHHHHHHCCcchhH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 35777888888887765553 5566677777777888888888888777766665
No 289
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=67.31 E-value=35 Score=26.60 Aligned_cols=19 Identities=11% Similarity=-0.008 Sum_probs=9.7
Q ss_pred HHcCCCHHHHHHHHHHHHh
Q 047359 300 QCGKGKWKEVEELLSAVLD 318 (440)
Q Consensus 300 ~~~~~~~~~a~~~~~~~~~ 318 (440)
....|+...+.++.+.+.+
T Consensus 217 A~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 217 ASLNSQVWSALQMSKALQD 235 (237)
T ss_dssp SCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 3344555555555555543
No 290
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=67.19 E-value=22 Score=27.83 Aligned_cols=17 Identities=6% Similarity=0.106 Sum_probs=7.8
Q ss_pred HHHhcCChHHHHHHHhc
Q 047359 91 ILCRSGKFEVVLGLLDS 107 (440)
Q Consensus 91 ~~~~~~~~~~a~~~~~~ 107 (440)
..+..|+.+-+..+++.
T Consensus 48 ~A~~~~~~~~v~~Ll~~ 64 (240)
T 3eu9_A 48 WAAINNRIDLVKYYISK 64 (240)
T ss_dssp HHHHTTCHHHHHHHHHT
T ss_pred HHHHhCCHHHHHHHHHc
Confidence 33444555444444443
No 291
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=67.06 E-value=54 Score=27.27 Aligned_cols=63 Identities=10% Similarity=0.132 Sum_probs=30.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCC--HHHHHHHHHHHHhcCCC
Q 047359 259 YAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGK--WKEVEELLSAVLDKGLL 322 (440)
Q Consensus 259 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~ 322 (440)
..++.-|...|+.++|...++++....+. .......+..+.-+.++ .+...+++..+.+.|+-
T Consensus 170 ~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~l 234 (307)
T 2zu6_B 170 DMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTI 234 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCC
Confidence 45566666667777777777766422111 11222333333333222 33455566666555443
No 292
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=66.92 E-value=66 Score=28.17 Aligned_cols=327 Identities=13% Similarity=0.113 Sum_probs=155.1
Q ss_pred HHHHHHccCCcchHHHHHHHHHhcCCccChHh--HHHHHHHHHhccchhHHHHHHHHHHHcCCCCChh--hHHHHHHHHH
Q 047359 18 VLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSA--CNALLDALYRQNEIRLASCLYGAMVRDGVSPNKF--TWSLVAQILC 93 (440)
Q Consensus 18 li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~ 93 (440)
.+...+..|+.+-. +.+.+.|..++... ..+.+...+..|+.+-+..+++ .|..++.. .-.+.+...+
T Consensus 17 ~L~~Aa~~g~~~~v----~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~ 88 (437)
T 1n11_A 17 PLHVASFMGHLPIV----KNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQ----NKAKVNAKAKDDQTPLHCAA 88 (437)
T ss_dssp HHHHHHHHTCHHHH----HHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHH----HTCCSSCCCTTSCCHHHHHH
T ss_pred HHHHHHHCCCHHHH----HHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh----CCCCCCCCCCCCCCHHHHHH
Confidence 45555677776544 44445565554321 2234555567787665555544 45443321 1123445556
Q ss_pred hcCChHHHHHHHhccc----CCchhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCchhhHHHHHHHHHhcCChhhHHH
Q 047359 94 RSGKFEVVLGLLDSGI----YSSVMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDR 169 (440)
Q Consensus 94 ~~~~~~~a~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 169 (440)
+.|+.+-+.-+++.-. .+....+ .+...+..|+.+-+..+++.-.. .. ..+...++. +...+..|+.+
T Consensus 89 ~~g~~~~v~~Ll~~ga~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~~~~~-~~-~~~~~g~t~-L~~A~~~g~~~---- 160 (437)
T 1n11_A 89 RIGHTNMVKLLLENNANPNLATTAGHT-PLHIAAREGHVETVLALLEKEAS-QA-CMTKKGFTP-LHVAAKYGKVR---- 160 (437)
T ss_dssp HHTCHHHHHHHHHHTCCTTCCCTTCCC-HHHHHHHHTCHHHHHHHHHTTCC-SC-CCCTTSCCH-HHHHHHTTCHH----
T ss_pred HCCCHHHHHHHHhCCCCCCCCCCCCCc-HHHHHHHcCCHHHHHHHHhCCCC-Cc-CCCCCCCCH-HHHHHHcCCHH----
Confidence 7888888887777644 2222223 33445667887766666554321 11 112222223 33445667765
Q ss_pred HHHHHHhcCCCCcccccchHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHhH--HHHHHHHhhhccHHHHHHHHHHHH
Q 047359 170 IVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTC--GCMLKALSKEGRVKEAIQIYHLIS 247 (440)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~ 247 (440)
+++.+.+.|..++.....-...+...+..|+.+-+ +.+.+.+..++...+ .+.+...+..|+.+-+ +.+.
T Consensus 161 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~----~~Ll 232 (437)
T 1n11_A 161 VAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIV----KLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVA----RSLL 232 (437)
T ss_dssp HHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHH----HHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHH----HHHH
T ss_pred HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHH----HHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHH----HHHH
Confidence 44555566655542111222345556667776544 444455544433211 1234444566776544 4444
Q ss_pred HcCCCCChh---hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh---hhHHHHHHHHHcCCCHHHHHHHHHHHHhcCC
Q 047359 248 ERGITVRDS---DYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCA---MELSRFVASQCGKGKWKEVEELLSAVLDKGL 321 (440)
Q Consensus 248 ~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 321 (440)
+.|..++.. -.+ .+...+..|..+-+. .+.+.+..++. .-.+.+ ...+..|+.+-+..++ +.|.
T Consensus 233 ~~g~~~~~~~~~g~t-~L~~A~~~g~~~~v~----~Ll~~~~~~~~~~~~g~t~L-~~A~~~~~~~~~~~Ll----~~g~ 302 (437)
T 1n11_A 233 QYGGSANAESVQGVT-PLHLAAQEGHAEMVA----LLLSKQANGNLGNKSGLTPL-HLVAQEGHVPVADVLI----KHGV 302 (437)
T ss_dssp HTTCCTTCCCTTCCC-HHHHHHHTTCHHHHH----HHHTTTCCTTCCCTTCCCHH-HHHHHHTCHHHHHHHH----HHTC
T ss_pred HcCCCCCCCCCCCCC-HHHHHHHCCCHHHHH----HHHhcCCCCCCCCCCCCCHH-HHHHHcCCHHHHHHHH----hCCc
Confidence 555443322 222 333444566655443 33444433322 222233 3334557766544444 4444
Q ss_pred CCchh---hhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHH---hHHHHHHHHHhcCcHHHHHHHHH
Q 047359 322 LLDSF---CCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVA---TYDVLLDGLFKDGRMEEAVRIFD 384 (440)
Q Consensus 322 ~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~g~~~~a~~~~~ 384 (440)
.++.. -.+ .+...+..|+.+-+ +.+.+.|..++.. -.+.|. ..++.|+.+-+.-+++
T Consensus 303 ~~~~~~~~g~t-~L~~A~~~g~~~~v----~~Ll~~gad~n~~~~~g~t~L~-~A~~~g~~~iv~~Ll~ 365 (437)
T 1n11_A 303 MVDATTRMGYT-PLHVASHYGNIKLV----KFLLQHQADVNAKTKLGYSPLH-QAAQQGHTDIVTLLLK 365 (437)
T ss_dssp CTTCCCSSCCC-HHHHHHHSSCSHHH----HHHHHTTCCTTCCCTTSCCHHH-HHHHTTCHHHHHHHHH
T ss_pred cCCCCCCCCCC-HHHHHHHcCcHHHH----HHHHhcCCCCCCCCCCCCCHHH-HHHHCChHHHHHHHHH
Confidence 43322 222 33444566776544 4445556555432 223333 3345666654444443
No 293
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=66.33 E-value=85 Score=29.28 Aligned_cols=145 Identities=10% Similarity=0.005 Sum_probs=76.8
Q ss_pred hHHHHHHHHHccCCcchHHHHHHHHHhcCCccChHhHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 047359 14 ALSLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILC 93 (440)
Q Consensus 14 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 93 (440)
.|.....+ .+.|++..+..+...+....+. ....|..+...+ ......+...++++-.. .+.....-..-+..+.
T Consensus 9 ~~~~a~~a-~~~~~~~~~~~l~~~l~~~pL~-~yl~y~~l~~~l-~~~~~~ev~~Fl~~~~~--~p~~~~Lr~~~l~~l~ 83 (618)
T 1qsa_A 9 RYAQIKQA-WDNRQMDVVEQMMPGLKDYPLY-PYLEYRQITDDL-MNQPAVTVTNFVRANPT--LPPARTLQSRFVNELA 83 (618)
T ss_dssp HHHHHHHH-HHTTCHHHHHHHSGGGTTSTTH-HHHHHHHHHHTG-GGCCHHHHHHHHHHCTT--CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHCCCHHHHHHHHHhhcCCCcH-HHHHHHHHHhCc-ccCCHHHHHHHHHHCCC--ChhHHHHHHHHHHHHH
Confidence 34444443 4567777777766555432111 112333333222 11234444444433221 1112233455567777
Q ss_pred hcCChHHHHHHHhcccCCchhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCchhhHHHHHHHHHhcCChh
Q 047359 94 RSGKFEVVLGLLDSGIYSSVMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTE 165 (440)
Q Consensus 94 ~~~~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 165 (440)
+.+++......+...+.+...-.....+....|+..+|......+=. .|. .....+..++..+.+.|...
T Consensus 84 ~~~~w~~~l~~~~~~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~-~~~-~~p~~c~~l~~~~~~~g~lt 153 (618)
T 1qsa_A 84 RREDWRGLLAFSPEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWL-TGK-SQPNACDKLFSVWRASGKQD 153 (618)
T ss_dssp HTTCHHHHHHHCCSCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHS-CSS-CCCTHHHHHHHHHHHTTCSC
T ss_pred hCCCHHHHHHhccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh-CCC-CCcHHHHHHHHHHHHCCCCC
Confidence 88889988887776323444445566777888888777777766654 222 23345566777776665543
No 294
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=66.06 E-value=29 Score=27.09 Aligned_cols=18 Identities=39% Similarity=0.704 Sum_probs=9.3
Q ss_pred HHHhcCChHHHHHHHhcc
Q 047359 91 ILCRSGKFEVVLGLLDSG 108 (440)
Q Consensus 91 ~~~~~~~~~~a~~~~~~~ 108 (440)
..+..|+.+-+..+++.-
T Consensus 83 ~A~~~~~~~~~~~Ll~~~ 100 (237)
T 3b7b_A 83 LAAKKGHYEVVQYLLSNG 100 (237)
T ss_dssp HHHHTTCHHHHHHHHTTT
T ss_pred HHHHcCCHHHHHHHHhCC
Confidence 334555655555555543
No 295
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=64.39 E-value=61 Score=26.95 Aligned_cols=67 Identities=13% Similarity=0.162 Sum_probs=42.7
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhccc--HHHHHHHHHHHHHCCCCCCH
Q 047359 363 YDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLKE--LRKAMKNHDEMLKMGHKPDE 429 (440)
Q Consensus 363 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~m~~~~~~p~~ 429 (440)
...++.-|...|+.++|.+.++++..-......+...+..++-+.++ .+....++..+.+.|+-+..
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~ 237 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVD 237 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHH
Confidence 46788889999999999999988753222234444555555555432 45566777777765554433
No 296
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=63.72 E-value=45 Score=25.21 Aligned_cols=110 Identities=10% Similarity=-0.005 Sum_probs=46.8
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHhccc-CCchhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCchhhHHHHHHHHH
Q 047359 81 NKFTWSLVAQILCRSGKFEVVLGLLDSGI-YSSVMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDGAR 159 (440)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 159 (440)
+...-...+.++.+.|+.+....+.+.+. ++...-...+.++.+.++.+.. ..+..+.. .++...-...+.++.
T Consensus 58 ~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~-~~L~~~l~----d~~~~vr~~a~~aL~ 132 (201)
T 3ltj_A 58 DAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDERAV-EPLIKALK----DEDWFVRIAAAFALG 132 (201)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGH-HHHHHHTT----CSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcHHHH-HHHHHHHc----CCCHHHHHHHHHHHH
Confidence 44444444444455444333333333232 4444445555555555554322 22222322 134444444555555
Q ss_pred hcCChhhHHHHHHHHHhcCCCCcccccchHHHHHHHhhcCcH
Q 047359 160 RYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKT 201 (440)
Q Consensus 160 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 201 (440)
+.++.+ +...+..+... ++ ...-...+.++.+.|+.
T Consensus 133 ~~~~~~-~~~~L~~~l~d---~~--~~vr~~A~~aL~~~~~~ 168 (201)
T 3ltj_A 133 EIGDER-AVEPLIKALKD---ED--GWVRQSAADALGEIGGE 168 (201)
T ss_dssp HHTCGG-GHHHHHHHTTC---SS--HHHHHHHHHHHHHHCSH
T ss_pred HhCCHH-HHHHHHHHHcC---CC--HHHHHHHHHHHHHhCch
Confidence 555433 22333333321 23 33444455555555553
No 297
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=62.32 E-value=30 Score=25.20 Aligned_cols=67 Identities=12% Similarity=0.116 Sum_probs=42.6
Q ss_pred hhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCc--HHHHHHHHHHHHHcCCCch
Q 047359 327 CCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGR--MEEAVRIFDYMKELKVVSS 394 (440)
Q Consensus 327 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~~~ 394 (440)
....++.-|...|+.++|.+.++++...... ...+...+..++-+.++ .+.+..++..+...+.-+.
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 3567888898999999999999888532111 22344455555555322 4566777777776665533
No 298
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=60.09 E-value=55 Score=24.98 Aligned_cols=166 Identities=11% Similarity=-0.005 Sum_probs=95.0
Q ss_pred chHHHHHHHHHhcCCccChHhHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHhcc
Q 047359 29 MDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSGKFEVVLGLLDSG 108 (440)
Q Consensus 29 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 108 (440)
.++...+-...+ .++...-...+..+.+.+..+ +...+..+.. .++..+-...+.++.+.++.+....+.+.+
T Consensus 18 ~~~~~~L~~~L~---~~~~~vR~~A~~~L~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l 90 (211)
T 3ltm_A 18 PEKVEMYIKNLQ---DDSYYVRRAAAYALGKIGDER-AVEPLIKALK---DEDAWVRRAAADALGQIGDERAVEPLIKAL 90 (211)
T ss_dssp GGGHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSCHHHHHHHHHHHHHHCCGGGHHHHHHHT
T ss_pred HhHHHHHHHHHc---CCCHHHHHHHHHHHHHhCCcc-HHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHHHHHHHHHHH
Confidence 444444444443 256666666667777766643 3344444443 356666667777777777655444444444
Q ss_pred c-CCchhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCcccccc
Q 047359 109 I-YSSVMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSG 187 (440)
Q Consensus 109 ~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 187 (440)
. ++...-...+.++.+.++.+. ...+..+.+ .++...-...+.++.+.++.+ +...+..+.+ .++ ..+
T Consensus 91 ~~~~~~vr~~a~~aL~~~~~~~~-~~~L~~~l~----d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~--~~v 159 (211)
T 3ltm_A 91 KDEDGWVRQSAAVALGQIGDERA-VEPLIKALK----DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DED--GWV 159 (211)
T ss_dssp TCSSHHHHHHHHHHHHHHCCGGG-HHHHHHHTT----CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSS--HHH
T ss_pred cCCCHHHHHHHHHHHHHhCcHHH-HHHHHHHHh----CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCC--HHH
Confidence 4 666677777777777777543 444444432 256666666777777777654 3444444443 234 555
Q ss_pred hHHHHHHHhhcCcHHHHHHHHHHHHh
Q 047359 188 NDYVIQKLSDMGKTYAAEMIFKRACD 213 (440)
Q Consensus 188 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (440)
-...+.++.+.+.. .+...+..+.+
T Consensus 160 r~~a~~aL~~~~~~-~~~~~L~~~l~ 184 (211)
T 3ltm_A 160 RQSAADALGEIGGE-RVRAAMEKLAE 184 (211)
T ss_dssp HHHHHHHHHHHCSH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhCch-hHHHHHHHHHh
Confidence 56667777777764 44444555444
No 299
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=58.54 E-value=24 Score=31.20 Aligned_cols=21 Identities=19% Similarity=0.207 Sum_probs=9.4
Q ss_pred hHHHHHHHHHhccchhHHHHH
Q 047359 49 ACNALLDALYRQNEIRLASCL 69 (440)
Q Consensus 49 ~~~~ll~~~~~~~~~~~a~~~ 69 (440)
.|..-...+...|++++|.++
T Consensus 363 L~~~~F~~l~~~g~y~~AA~~ 383 (494)
T 1bpo_A 363 LFARKFNALFAQGNYSEAAKV 383 (494)
T ss_dssp HHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHH
Confidence 343344444444555444433
No 300
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=56.25 E-value=64 Score=26.93 Aligned_cols=130 Identities=12% Similarity=0.031 Sum_probs=0.0
Q ss_pred HHhcCChHHHHHHHhcccCCchhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCchhhHHHHHHHHHhc---CChhhHH
Q 047359 92 LCRSGKFEVVLGLLDSGIYSSVMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDGARRY---EKTEVSD 168 (440)
Q Consensus 92 ~~~~~~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---~~~~~a~ 168 (440)
+...|++++|+..|+.+. +...+.......+.+++.+++....+ .....-++.-.+. .+..+..
T Consensus 124 ~~t~gKf~eAl~~Fr~iL-----~~i~l~~v~~~~e~~e~~eli~icrE--------Yilal~iEl~Rr~l~~~~~kR~l 190 (325)
T 3mv2_A 124 NFKLNKPDIAIECFREAI-----YRITLLMVDDAEDEKLAHKILETARE--------YILGLSIELERRSLKEGNTVRML 190 (325)
T ss_dssp HHHTTCHHHHHHHHHHHH-----HHHHTCCBCSSHHHHHHHHHHHHHHH--------HHHHHHHHHHHHTCCTTCHHHHH
T ss_pred HHhcCCHHHHHHHHHHHH-----HHhheeeeccHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhcCcccHHHHH
Q ss_pred HHHHHHHhcCCCCcccccchHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhc
Q 047359 169 RIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEG 234 (440)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 234 (440)
++-..+..-.+.|.+..-+....|....+.+++..|-.+-+++.+.++.++...-..-+..-+...
T Consensus 191 ELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~~a~qArkil~~ce~~ 256 (325)
T 3mv2_A 191 ELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGPRAEQARKIKNKADSM 256 (325)
T ss_dssp HHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHHTS
T ss_pred HHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC
No 301
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=55.20 E-value=35 Score=30.81 Aligned_cols=69 Identities=7% Similarity=-0.091 Sum_probs=44.8
Q ss_pred hhhHHHHHHHHHhcCChhhHHHHHHHHHhcCC-CCccc-ccchHHHHHHHhhcCcHHHHHHHHHHHHhcCC
Q 047359 148 FSTYSSILDGARRYEKTEVSDRIVGLMVEKKL-LPKHF-LSGNDYVIQKLSDMGKTYAAEMIFKRACDEKI 216 (440)
Q Consensus 148 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 216 (440)
...++.+++.|...+.++.|..+..+..--.. .++.- ..-+..+...+.-.+++.+|.+.+.......+
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap 301 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAP 301 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 34678888888999999999988887742100 01100 11123356677778889999888888776543
No 302
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=55.12 E-value=68 Score=24.45 Aligned_cols=171 Identities=13% Similarity=-0.012 Sum_probs=100.9
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHhccc-CCchhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCchhhHHHHHHHH
Q 047359 80 PNKFTWSLVAQILCRSGKFEVVLGLLDSGI-YSSVMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDGA 158 (440)
Q Consensus 80 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 158 (440)
++...-...+..+.+.|+.+....+.+.+. ++...-...+.++.+.++.+. ...+..+.. .++...-...+.++
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~-~~~L~~~l~----~~~~~vr~~a~~aL 105 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERA-VEPLIKALK----DEDGWVRQSAAVAL 105 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGG-HHHHHHHTT----CSSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHH-HHHHHHHHc----CCCHHHHHHHHHHH
Confidence 566666666677777776444444444444 666666677777777777544 444444433 25666667777788
Q ss_pred HhcCChhhHHHHHHHHHhcCCCCcccccchHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHH
Q 047359 159 RRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKE 238 (440)
Q Consensus 159 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 238 (440)
.+.++.+.. ..+..+.+ .++ ...-...+.++.+.|+.+ +...+..+.+ .++..+-...+.++.+.+. ..
T Consensus 106 ~~~~~~~~~-~~L~~~l~---d~~--~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~-~~ 174 (211)
T 3ltm_A 106 GQIGDERAV-EPLIKALK---DED--WFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG-ER 174 (211)
T ss_dssp HHHCCGGGH-HHHHHHTT---CSS--HHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-HH
T ss_pred HHhCcHHHH-HHHHHHHh---CCC--HHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-hh
Confidence 888875544 33444443 244 556666777777777654 4444444443 3566677777778887776 44
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 047359 239 AIQIYHLISERGITVRDSDYYAFVNVLCKEH 269 (440)
Q Consensus 239 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 269 (440)
+...+..+.+. ++...-...+.++.+.+
T Consensus 175 ~~~~L~~~l~d---~~~~vr~~A~~aL~~~~ 202 (211)
T 3ltm_A 175 VRAAMEKLAET---GTGFARKVAVNYLETHK 202 (211)
T ss_dssp HHHHHHHHHHH---CCHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHhC---CCHHHHHHHHHHHHhcC
Confidence 55566666553 35555555666655443
No 303
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=55.02 E-value=72 Score=24.76 Aligned_cols=24 Identities=13% Similarity=0.084 Sum_probs=12.1
Q ss_pred HHHhccchhHHHHHHHHHHHcCCC
Q 047359 56 ALYRQNEIRLASCLYGAMVRDGVS 79 (440)
Q Consensus 56 ~~~~~~~~~~a~~~~~~~~~~~~~ 79 (440)
..++.|+.+.+..+++.+.+.|..
T Consensus 15 ~A~~~g~~~~v~~Ll~~~~~~~~~ 38 (241)
T 1k1a_A 15 IAVVQGNLPAVHRLVNLFQQGGRE 38 (241)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCC
Confidence 334455555555555555444433
No 304
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=54.21 E-value=67 Score=24.79 Aligned_cols=19 Identities=11% Similarity=-0.094 Sum_probs=10.4
Q ss_pred HHHHHccCCcchHHHHHHH
Q 047359 19 LDCYSHKGLFMDGLEVYRM 37 (440)
Q Consensus 19 i~~~~~~~~~~~A~~~~~~ 37 (440)
+...++.|+.+....+++.
T Consensus 10 l~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 4444556666665555554
No 305
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=52.91 E-value=39 Score=26.90 Aligned_cols=55 Identities=11% Similarity=-0.106 Sum_probs=30.8
Q ss_pred HHHHHccCCcchHHHHHHHHHhcCCccChH-------hHHHHHHHHH--hccchhHHHHHHHHH
Q 047359 19 LDCYSHKGLFMDGLEVYRMMRVYGFVPAVS-------ACNALLDALY--RQNEIRLASCLYGAM 73 (440)
Q Consensus 19 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~~ll~~~~--~~~~~~~a~~~~~~~ 73 (440)
+...++.|+.+....+++.+.+.|..++.. -.+.|..+.. +.|+.+-+..+++.-
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 344456777777777777766665444422 2233333332 456666666666554
No 306
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=52.77 E-value=69 Score=23.87 Aligned_cols=108 Identities=11% Similarity=0.089 Sum_probs=54.9
Q ss_pred hHHHHHHH-HHhcCChhHHHHHHHHHhcCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCcccccchHHHH
Q 047359 114 MYNLVIDF-YSKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVI 192 (440)
Q Consensus 114 ~~~~li~~-~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~ 192 (440)
-|..|+.. +.-.|.+.+++-++..... .+..-|..| ++-+..++..|...++.++...+..+ +..-..+-
T Consensus 34 eY~lL~~I~LyyngEY~R~Lf~L~~lNT-----~Ts~YYk~L--Cy~klKdYkkA~~~le~il~~kvd~d--~~~d~~~~ 104 (242)
T 3kae_A 34 EYRMLMSIVLYLNGEYTRALFHLHKLNT-----CTSKYYESL--CYKKKKDYKKAIKSLESILEGKVERD--PDVDARIQ 104 (242)
T ss_dssp CTHHHHHHHHHHTTCHHHHHHHHHTCCB-----HHHHHHHHH--HHHHTTCHHHHHHHHHHHHTTCSBCC--CCCCHHHH
T ss_pred HHHhhhhhhhhhcchHhHHHHHHHhcch-----HHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcccccC--cccccccc
Confidence 34444432 3345666666655544311 122223332 45667778888888887776554432 11111000
Q ss_pred HHHhhcCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHH
Q 047359 193 QKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISE 248 (440)
Q Consensus 193 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 248 (440)
..+. ++.-....++.+...+.+.|+.++|+..+..--.
T Consensus 105 ~ffv------------------d~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~ 142 (242)
T 3kae_A 105 EMFV------------------DPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFG 142 (242)
T ss_dssp TTSC------------------CTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred eeee------------------ccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcC
Confidence 0000 1111234566667777778888888887765443
No 307
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=49.49 E-value=71 Score=23.05 Aligned_cols=58 Identities=10% Similarity=0.065 Sum_probs=27.3
Q ss_pred HHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcC
Q 047359 316 VLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDG 374 (440)
Q Consensus 316 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 374 (440)
+.+.|.+++.. -..++..+...+..-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 18 l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 18 IKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 33445443322 23344444444455566666666665555445554444444444444
No 308
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=49.47 E-value=75 Score=23.34 Aligned_cols=60 Identities=8% Similarity=0.065 Sum_probs=34.5
Q ss_pred HHHHHHHHHccCCcchHHHHHHHHHhcCCcc--ChHhHHHHHH-H-----HHhccchhHHHHHHHHHHH
Q 047359 15 LSLVLDCYSHKGLFMDGLEVYRMMRVYGFVP--AVSACNALLD-A-----LYRQNEIRLASCLYGAMVR 75 (440)
Q Consensus 15 ~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~ll~-~-----~~~~~~~~~a~~~~~~~~~ 75 (440)
|...+..|-. |++-+|-++|+..-.....+ ....|..||+ . ..+.|+...|..++.+...
T Consensus 36 ~~~~i~lFn~-g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 36 VVHGVRLYNS-GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHT-TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3344444433 77777777777776554334 3445555555 2 2345777777777776644
No 309
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=48.57 E-value=57 Score=21.67 Aligned_cols=52 Identities=10% Similarity=0.112 Sum_probs=34.1
Q ss_pred HHHHhcCChhHHHHHHHHHhcCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcC
Q 047359 120 DFYSKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKK 178 (440)
Q Consensus 120 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 178 (440)
..+...|++++|..+.+.. ..||...|.+|.. .+.|..+.+...+..+..+|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~-----c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 47 SSLANQGRYQEALAFAHGN-----PWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HHHHHTTCHHHHHGGGTTC-----CCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS
T ss_pred HHHHcchhHHHHHHhcCCC-----CCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 3456677787777766555 3477777766654 46777777777776666654
No 310
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=47.93 E-value=1.3e+02 Score=25.49 Aligned_cols=25 Identities=8% Similarity=0.074 Sum_probs=15.1
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHH
Q 047359 151 YSSILDGARRYEKTEVSDRIVGLMV 175 (440)
Q Consensus 151 ~~~l~~~~~~~~~~~~a~~~~~~~~ 175 (440)
...++.-|...|+.++|.+.++++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 3455666666666666666666553
No 311
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=47.86 E-value=52 Score=26.12 Aligned_cols=22 Identities=5% Similarity=0.022 Sum_probs=10.4
Q ss_pred hhhccHHHHHHHHHHHHHcCCC
Q 047359 231 SKEGRVKEAIQIYHLISERGIT 252 (440)
Q Consensus 231 ~~~~~~~~a~~~~~~~~~~~~~ 252 (440)
++.|+.+....+++.+.+.+..
T Consensus 13 ~~~g~~~~v~~ll~~l~~~~~~ 34 (260)
T 3jxi_A 13 VSRGSPDGLEGLLSFLLTHKKR 34 (260)
T ss_dssp HHHTCGGGGTTHHHHHHHHTCC
T ss_pred HHhCCHHHHHHHHHHHHhcCCC
Confidence 3445555544455544444433
No 312
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=47.75 E-value=59 Score=21.63 Aligned_cols=51 Identities=12% Similarity=0.287 Sum_probs=30.3
Q ss_pred HHHhcCChhHHHHHHHHHhcCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcC
Q 047359 121 FYSKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKK 178 (440)
Q Consensus 121 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 178 (440)
.+...|++++|..+.+.. ..||...|.+|.. .+.|..+.+...+..+..+|
T Consensus 49 SLmNrG~Yq~Al~l~~~~-----c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 49 SLMNRGDYASALQQGNKL-----AYPDLEPWLALCE--YRLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp HHHHTTCHHHHHHHHTTS-----CCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC
T ss_pred HHHcchhHHHHHHhcCCC-----CCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 455667777776666555 2466666665543 35666666666665555544
No 313
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=47.68 E-value=1.2e+02 Score=25.51 Aligned_cols=92 Identities=16% Similarity=0.123 Sum_probs=46.7
Q ss_pred HHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHh--HHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 047359 190 YVIQKLSDMGKTYAAEMIFKRACDEKIELQDDT--CGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCK 267 (440)
Q Consensus 190 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 267 (440)
..+...+..|+.+.+..+++ .|..++... -.+.+...+..|+.+-+. .+.+.|..++...-...+...+.
T Consensus 22 t~L~~Aa~~g~~~~v~~Ll~----~g~~~~~~d~~g~t~L~~A~~~g~~~~v~----~Ll~~g~~~~~~~g~t~L~~A~~ 93 (364)
T 3ljn_A 22 EKIHVAARKGQTDEVRRLIE----TGVSPTIQNRFGCTALHLACKFGCVDTAK----YLASVGEVHSLWHGQKPIHLAVM 93 (364)
T ss_dssp HHHHHHHHHTCHHHHHHHHH----TTCCTTCCCTTCCCHHHHHHHHCCHHHHH----HHHHHCCCCCCBTTBCHHHHHHH
T ss_pred CHHHHHHHcCCHHHHHHHHH----cCCCccccCCCCCcHHHHHHHcCCHHHHH----HHHHCCCCccccCCCCHHHHHHH
Confidence 44556666777766666554 344333221 122344445566665443 33444443333222223444456
Q ss_pred cCChHHHHHHHHHHHHcCCCCC
Q 047359 268 EHQPEEVCGLLRDVVERGYIPC 289 (440)
Q Consensus 268 ~~~~~~a~~~~~~~~~~~~~~~ 289 (440)
.|+.+-+..+++.....+..++
T Consensus 94 ~g~~~~v~~Ll~~~~~~~~~~~ 115 (364)
T 3ljn_A 94 ANKTDLVVALVEGAKERGQMPE 115 (364)
T ss_dssp TTCHHHHHHHHHHHHHHTCCHH
T ss_pred cCCHHHHHHHHHhccccCCCHH
Confidence 6777777777766555555444
No 314
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=47.66 E-value=68 Score=23.14 Aligned_cols=43 Identities=26% Similarity=0.327 Sum_probs=18.8
Q ss_pred HHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 047359 227 LKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEH 269 (440)
Q Consensus 227 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 269 (440)
+..+...+..-.|.++++.+.+.++..+..|.-..+..+...|
T Consensus 33 L~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 33 VSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 3333333344445555555554444444444444444444433
No 315
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=47.28 E-value=63 Score=23.12 Aligned_cols=32 Identities=16% Similarity=0.173 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 047359 238 EAIQIYHLISERGITVRDSDYYAFVNVLCKEH 269 (440)
Q Consensus 238 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 269 (440)
.|.++++.+.+.+...+..|.-..+..+...|
T Consensus 39 sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 39 TADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp CHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 34444444444333333333333333443333
No 316
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=45.07 E-value=29 Score=20.34 Aligned_cols=29 Identities=14% Similarity=0.149 Sum_probs=14.7
Q ss_pred chHHHHHHHHHhcCCccChHhHHHHHHHH
Q 047359 29 MDGLEVYRMMRVYGFVPAVSACNALLDAL 57 (440)
Q Consensus 29 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~~ 57 (440)
++|.+.|-+|.+..-.++.-+|...++.+
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 45555555555443334444555555555
No 317
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=44.15 E-value=85 Score=22.43 Aligned_cols=42 Identities=21% Similarity=0.114 Sum_probs=18.9
Q ss_pred HHHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcC
Q 047359 333 EYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDG 374 (440)
Q Consensus 333 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 374 (440)
..+...+..-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 29 ~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 29 EYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 333334444455555555555444444444444444444333
No 318
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=43.71 E-value=1.5e+02 Score=25.06 Aligned_cols=24 Identities=0% Similarity=-0.051 Sum_probs=13.8
Q ss_pred HHHHHHHHhcCChHHHHHHHhccc
Q 047359 86 SLVAQILCRSGKFEVVLGLLDSGI 109 (440)
Q Consensus 86 ~~l~~~~~~~~~~~~a~~~~~~~~ 109 (440)
..++.-|...|+.++|...++++.
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcC
Confidence 445555555566666666666554
No 319
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=43.51 E-value=83 Score=22.14 Aligned_cols=61 Identities=18% Similarity=0.123 Sum_probs=39.2
Q ss_pred HHHhcCCccChHhHHHHHHHHHhcc-chhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh
Q 047359 37 MMRVYGFVPAVSACNALLDALYRQN-EIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSGKF 98 (440)
Q Consensus 37 ~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 98 (440)
.+.+.|.+++. .-..++..+...+ ..-.|.++++.+.+.+...+..|.-.-++.+...|-+
T Consensus 8 ~l~~~g~r~T~-qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 8 ELRKAGLKVTL-PRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHHTTCCCCH-HHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHCCCCCCH-HHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 35566665544 3345566666655 6777889999888877666666666666666666643
No 320
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=43.51 E-value=77 Score=22.69 Aligned_cols=61 Identities=15% Similarity=0.101 Sum_probs=39.8
Q ss_pred HHHHhcCCccChHhHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh
Q 047359 36 RMMRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSGKF 98 (440)
Q Consensus 36 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 98 (440)
+.+.+.|.+++.. -..++..+...+ .-.|.++++.+.+.+...+..|.-.-++.+...|-+
T Consensus 8 ~~L~~~g~r~T~q-R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 8 SDLRQRGYRLTPQ-RQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHHHTTTCCCCHH-HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHcCCCcCHH-HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 3455667665543 344555565556 678899999998877666777766666777766643
No 321
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=43.35 E-value=94 Score=24.51 Aligned_cols=207 Identities=11% Similarity=-0.054 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhcCCCCcc----cccchHHHHHHHhhc---CcHHHHHHHHHHHHhcCCCC------
Q 047359 152 SSILDGARRYEKTEVSDRIVGLMVEKKLLPKH----FLSGNDYVIQKLSDM---GKTYAAEMIFKRACDEKIEL------ 218 (440)
Q Consensus 152 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~------ 218 (440)
.+.+...+..|+.+....+++.+.+.|..++. ....-...+...+.. |+.+-+..+++.-...+...
T Consensus 3 ~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~ 82 (256)
T 2etb_A 3 RDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQ 82 (256)
T ss_dssp HHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCC
T ss_pred ccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccc
Q ss_pred ----CHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhh---------------HHHHHHHHHhcCChHHHHHHHH
Q 047359 219 ----QDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSD---------------YYAFVNVLCKEHQPEEVCGLLR 279 (440)
Q Consensus 219 ----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---------------~~~l~~~~~~~~~~~~a~~~~~ 279 (440)
|..-.+.+..+..... .++.+.+.+.|..++... -.+.+...+..|+.+-+..+++
T Consensus 83 ~~~~d~~g~t~L~~A~~~g~-----~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~ 157 (256)
T 2etb_A 83 CTDEFYQGHSALHIAIEKRS-----LQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLE 157 (256)
T ss_dssp CCSTTTTTCCHHHHHHHTTC-----HHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred cccccccCCCHHHHHHHcCC-----HHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHh
Q ss_pred ---HHHHcCCCCChhhHHHHHHHHHcCCCHH---HHHHHHHHHHhcCCCC---------chhhhHHHHHHHHcCCcHHHH
Q 047359 280 ---DVVERGYIPCAMELSRFVASQCGKGKWK---EVEELLSAVLDKGLLL---------DSFCCSSLMEYYCSNRQIDKA 344 (440)
Q Consensus 280 ---~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a 344 (440)
.-...+.......--....+....+..+ ...++++.+.+.|..+ ....-.+-+...+..|+.+-+
T Consensus 158 ~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v 237 (256)
T 2etb_A 158 NPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIF 237 (256)
T ss_dssp CSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHH
T ss_pred ccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHH
Q ss_pred HHHHHHHHhccCCcCHHhH
Q 047359 345 IALHIKIEKLKGSLDVATY 363 (440)
Q Consensus 345 ~~~~~~~~~~~~~p~~~~~ 363 (440)
..+++.-......+....+
T Consensus 238 ~~Ll~~g~~~~~~~~~~~~ 256 (256)
T 2etb_A 238 RHILQREFSGAAAHHHHHH 256 (256)
T ss_dssp HHHHHHHHHHHHHHC----
T ss_pred HHHHhCCCCCCCccccccC
No 322
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=42.81 E-value=1.8e+02 Score=25.77 Aligned_cols=142 Identities=11% Similarity=0.058 Sum_probs=77.1
Q ss_pred cHHHHHHHHHHHHHc--------CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC----CChhhHHHHHHHHHc
Q 047359 235 RVKEAIQIYHLISER--------GITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYI----PCAMELSRFVASQCG 302 (440)
Q Consensus 235 ~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~ 302 (440)
..++...+++..... ++..+......++.. ..|+..++..+++.+...... ....+...+-.+..+
T Consensus 166 ~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~--~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~~ 243 (447)
T 3pvs_A 166 STEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAEL--VNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGE 243 (447)
T ss_dssp CHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHH--HCSCHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccccCCCCccCHHHHHHHHhh
Confidence 345666666666553 233455556655554 468888888888887654210 112222222222211
Q ss_pred CCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHH---HcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCc----
Q 047359 303 KGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYY---CSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGR---- 375 (440)
Q Consensus 303 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---- 375 (440)
... ....+...+..++.++ .+.++.+.|+..+.+|.+.|..|....-..+..+....|.
T Consensus 244 ~~~--------------~~dk~gd~~yd~isal~ksirgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~ 309 (447)
T 3pvs_A 244 RSA--------------RFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPR 309 (447)
T ss_dssp CCC--------------C---CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTH
T ss_pred hhh--------------ccCCccchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChh
Confidence 100 0000111122233333 3567899999999999998887766555555666655554
Q ss_pred -HHHHHHHHHHHHHcCCC
Q 047359 376 -MEEAVRIFDYMKELKVV 392 (440)
Q Consensus 376 -~~~a~~~~~~~~~~~~~ 392 (440)
..-|...++.....|.+
T Consensus 310 a~~~~~~~~~~~~~~g~p 327 (447)
T 3pvs_A 310 AMQVAIAAWDCFTRVGPA 327 (447)
T ss_dssp HHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHHHHHHhCCc
Confidence 34455566666666666
No 323
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=42.49 E-value=50 Score=19.32 Aligned_cols=16 Identities=31% Similarity=0.459 Sum_probs=8.0
Q ss_pred cCChhHHHHHHHHHhc
Q 047359 125 KGDFGAAFDRLNEMCN 140 (440)
Q Consensus 125 ~~~~~~a~~~~~~~~~ 140 (440)
.|+.+.|++.+-.|..
T Consensus 36 ~gdvd~aI~~LL~m~~ 51 (59)
T 1wgl_A 36 RGNKDAAINSLLQMGE 51 (59)
T ss_dssp TTCHHHHHHHHHHSSC
T ss_pred CCCHHHHHHHHHcCcC
Confidence 3455555555555543
No 324
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=42.33 E-value=94 Score=22.39 Aligned_cols=62 Identities=16% Similarity=0.128 Sum_probs=41.7
Q ss_pred HHHHhcCCccChHhHHHHHHHHHhcc-chhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh
Q 047359 36 RMMRVYGFVPAVSACNALLDALYRQN-EIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSGKF 98 (440)
Q Consensus 36 ~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 98 (440)
+.+.+.|.+++.. -..++..+...+ ..-.|.++++.+.+.+...+..|.-.-++.+...|-+
T Consensus 6 ~~l~~~g~r~T~q-R~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 6 QALKDAGLKVTLP-RLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHHTTCCCCHH-HHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 3456677665543 345556666655 6778999999998877666777766667777777644
No 325
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=42.15 E-value=1.6e+02 Score=25.09 Aligned_cols=26 Identities=12% Similarity=0.057 Sum_probs=22.1
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHH
Q 047359 150 TYSSILDGARRYEKTEVSDRIVGLMV 175 (440)
Q Consensus 150 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 175 (440)
....++.-|...++.+++...++++.
T Consensus 56 ~~~~ii~EYf~~~d~~Ea~~~l~eL~ 81 (358)
T 3eiq_C 56 TLTPIIQEYFEHGDTNEVAEMLRDLN 81 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTT
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhC
Confidence 45678888999999999999988864
No 326
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=41.63 E-value=1.1e+02 Score=23.81 Aligned_cols=49 Identities=12% Similarity=0.100 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHhcCCCCchh--hhH-----HHHHHHHcCCcHHHHHHHHHHHHhc
Q 047359 306 WKEVEELLSAVLDKGLLLDSF--CCS-----SLMEYYCSNRQIDKAIALHIKIEKL 354 (440)
Q Consensus 306 ~~~a~~~~~~~~~~~~~~~~~--~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~ 354 (440)
++.|+.+|+.+.+....++.. ... ..+..|.+.|.+++|.+++++....
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 567777777776553222211 111 2233566777777777777776653
No 327
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=41.44 E-value=75 Score=22.38 Aligned_cols=57 Identities=14% Similarity=0.056 Sum_probs=27.1
Q ss_pred HhcCCCCchhhhHHHHHHHHcCC-cHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcC
Q 047359 317 LDKGLLLDSFCCSSLMEYYCSNR-QIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDG 374 (440)
Q Consensus 317 ~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 374 (440)
.+.|.+++.. -..++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 10 ~~~g~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 10 RKAGLKVTLP-RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHTTCCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHCCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 3445443332 223344444444 45556666666666555545554444444444444
No 328
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=41.27 E-value=1e+02 Score=22.58 Aligned_cols=57 Identities=16% Similarity=0.080 Sum_probs=31.1
Q ss_pred HhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHhc--cCCcCHHhHHHHHHHHHhcC
Q 047359 317 LDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKL--KGSLDVATYDVLLDGLFKDG 374 (440)
Q Consensus 317 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g 374 (440)
.+.|.+++. .-..++..+...+..-.|.++++.+.+. +...+..|...-+..+...|
T Consensus 25 ~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~G 83 (162)
T 4ets_A 25 RQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAE 83 (162)
T ss_dssp HHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTT
T ss_pred HHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Confidence 344555433 2344455555555666667777766665 55555555544555555555
No 329
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=40.83 E-value=1.1e+02 Score=22.57 Aligned_cols=54 Identities=6% Similarity=-0.052 Sum_probs=40.2
Q ss_pred HHcCCcHHHHHHHHHHHHhccCCc--CHHhHHHHHH-H-----HHhcCcHHHHHHHHHHHHH
Q 047359 335 YCSNRQIDKAIALHIKIEKLKGSL--DVATYDVLLD-G-----LFKDGRMEEAVRIFDYMKE 388 (440)
Q Consensus 335 ~~~~~~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~-~-----~~~~g~~~~a~~~~~~~~~ 388 (440)
+...|++-+|-++++..-+....+ ....|..||+ . ..+.|+...|..++.+...
T Consensus 42 lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 42 LYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 345589999999998887765555 5567777777 2 2357999999999988865
No 330
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=39.39 E-value=1.6e+02 Score=24.35 Aligned_cols=103 Identities=12% Similarity=0.032 Sum_probs=44.5
Q ss_pred HHHHHHhcCCCCchhh--hHHHHHHHHcCCcHHHHHHHHHHHHhccCCcC---HHhHHHHHHHHHhcCcHHHHHHHHHHH
Q 047359 312 LLSAVLDKGLLLDSFC--CSSLMEYYCSNRQIDKAIALHIKIEKLKGSLD---VATYDVLLDGLFKDGRMEEAVRIFDYM 386 (440)
Q Consensus 312 ~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~ 386 (440)
+.+.+.+.|..++... -.+.+...+..|..+....++.. .|..++ ..-.+.|..+ ++.|+.+-+ +.+
T Consensus 221 i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~---~~~~vn~~d~~G~TpL~~A-~~~g~~~iv----~~L 292 (337)
T 4g8k_A 221 ITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ---EHIEINDTDSDGKTALLLA-VELKLKKIA----ELL 292 (337)
T ss_dssp HHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTS---TTCCTTCBCTTSCBHHHHH-HHTTCHHHH----HHH
T ss_pred HHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHh---cCCcccCcCCCCCCHHHHH-HHcCCHHHH----HHH
Confidence 3334455555544321 11233445566666655444321 222222 2222233332 355665443 334
Q ss_pred HHcCCC-chhhHHHHHHHHHhcccHHHHHHHHHHHHHCCCCCCH
Q 047359 387 KELKVV-SSSSFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDE 429 (440)
Q Consensus 387 ~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 429 (440)
.+.|.. +... . +....+.|+. ++.+-+++.|-.||.
T Consensus 293 l~~GAd~n~~~--~-L~~A~~~~~~----~iv~~Ll~~GA~~d~ 329 (337)
T 4g8k_A 293 CKRGASTDCGD--L-VMTARRNYDH----SLVKVLLSHGAKEDF 329 (337)
T ss_dssp HTTSCSSTTCC--H-HHHHHHTTCH----HHHHHHHHTTCCC--
T ss_pred HHCCCCCCCCC--H-HHHHHHcCCH----HHHHHHHHCcCCCCC
Confidence 455544 3222 2 2233445654 355566777766664
No 331
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=39.25 E-value=1.4e+02 Score=23.58 Aligned_cols=89 Identities=9% Similarity=-0.067 Sum_probs=46.3
Q ss_pred HHHHHhhcCcHHHHHHHHHHHHhc--CCCC----CHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 047359 191 VIQKLSDMGKTYAAEMIFKRACDE--KIEL----QDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNV 264 (440)
Q Consensus 191 l~~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 264 (440)
-++.+....++++|.+++++..+. +..+ +.......+..-.....-.-+..+.+++.. .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHH
Confidence 355566666666666666655432 1111 111222223333333333344445555522 3445556667777
Q ss_pred HHhcCChHHHHHHHHHHH
Q 047359 265 LCKEHQPEEVCGLLRDVV 282 (440)
Q Consensus 265 ~~~~~~~~~a~~~~~~~~ 282 (440)
+.+.|+.++|..+|-+..
T Consensus 101 L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHH
Confidence 788888888888776543
No 332
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=39.17 E-value=55 Score=23.48 Aligned_cols=31 Identities=13% Similarity=0.090 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 047359 238 EAIQIYHLISERGITVRDSDYYAFVNVLCKE 268 (440)
Q Consensus 238 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 268 (440)
.|.++++.+.+.+...+..|.-.-+..+...
T Consensus 35 ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~ 65 (145)
T 3eyy_A 35 TPDDILGEVRKTASGINISTVYRTLELLEEL 65 (145)
T ss_dssp CHHHHHHHHHTTCTTCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhhCCCCCHhHHHHHHHHHHHC
Confidence 3444444444333333333333333333333
No 333
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=38.68 E-value=73 Score=23.39 Aligned_cols=69 Identities=17% Similarity=0.146 Sum_probs=45.6
Q ss_pred chHHHHHHH-HHhcCCccChHhHHHHHHHHHhccchhHHHHHHHHHHHc--CCCCChhhHHHHHHHHHhcCCh
Q 047359 29 MDGLEVYRM-MRVYGFVPAVSACNALLDALYRQNEIRLASCLYGAMVRD--GVSPNKFTWSLVAQILCRSGKF 98 (440)
Q Consensus 29 ~~A~~~~~~-~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~ 98 (440)
+.+++-+++ +.+.|.+.+. .-..++..+...+..-.|.++++.+.+. +...+..|.-.-++.+...|-+
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 444444443 4556766544 4456677777777788899999999876 6556666666666777777643
No 334
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=38.53 E-value=1.3e+02 Score=23.02 Aligned_cols=14 Identities=14% Similarity=0.264 Sum_probs=5.7
Q ss_pred HhcCChhHHHHHHH
Q 047359 123 SKKGDFGAAFDRLN 136 (440)
Q Consensus 123 ~~~~~~~~a~~~~~ 136 (440)
++.|+.+....++.
T Consensus 14 ~~~g~~~~v~~ll~ 27 (231)
T 3aji_A 14 AYSGKLDELKERIL 27 (231)
T ss_dssp HHHTCHHHHHHHHH
T ss_pred HHhCCHHHHHHHHH
Confidence 33444444444433
No 335
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=38.10 E-value=83 Score=22.68 Aligned_cols=32 Identities=22% Similarity=0.089 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHhccCCcCHHhHHHHHHHHHh
Q 047359 341 IDKAIALHIKIEKLKGSLDVATYDVLLDGLFK 372 (440)
Q Consensus 341 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 372 (440)
.-.|.++++.+.+.+...+..|...-+..+..
T Consensus 33 h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e 64 (150)
T 2w57_A 33 HISAEELYKKLIDLGEEIGLATVYRVLNQFDD 64 (150)
T ss_dssp SEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 34444444444444333333333333333333
No 336
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=38.00 E-value=2.6e+02 Score=27.86 Aligned_cols=110 Identities=10% Similarity=-0.059 Sum_probs=67.4
Q ss_pred HHHHHHhcCChHHHHHHHhcccCCchhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCC----------------------
Q 047359 88 VAQILCRSGKFEVVLGLLDSGIYSSVMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLT---------------------- 145 (440)
Q Consensus 88 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---------------------- 145 (440)
++..+...|..+-|.++......+...--.+..+|...|++++|.+.|.+.-. |+.
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~--gl~~~~~~~~~~~~~~~ll~~~e~~ 893 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL--VLYSHTSQFAVLREFQEIAEKYHHQ 893 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC--TTCSSCCSCGGGHHHHHHHHHTTTC
T ss_pred HHHHHHHhcHHHHHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh--hcccCcccccchhhhhhccCccccc
Confidence 55556666666666665555554433333455666677777777777765531 111
Q ss_pred -CchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCc--ccccchHHHHHHHhhcC
Q 047359 146 -PGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPK--HFLSGNDYVIQKLSDMG 199 (440)
Q Consensus 146 -p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~ 199 (440)
....-|..+++.+-+.+-++.+.++-+..++.--..+ .....+..+.++.+..|
T Consensus 894 ~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 894 NLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp SHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 1123788888999999999999888888876421111 11346777777776654
No 337
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=37.95 E-value=72 Score=19.83 Aligned_cols=60 Identities=17% Similarity=0.138 Sum_probs=36.6
Q ss_pred HHHhcCCccChHhHHHHHHHHHhcc-chhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 047359 37 MMRVYGFVPAVSACNALLDALYRQN-EIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSGK 97 (440)
Q Consensus 37 ~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 97 (440)
.+.+.|...+..- ..++..+...+ ..-.+.++++.+.+.+...+..|....+..+...|-
T Consensus 7 ~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 3555665555433 45555665554 456677888888776555566666666666666654
No 338
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=37.85 E-value=1.3e+02 Score=22.55 Aligned_cols=14 Identities=14% Similarity=0.150 Sum_probs=6.5
Q ss_pred HHHHHHHHhcCCCC
Q 047359 168 DRIVGLMVEKKLLP 181 (440)
Q Consensus 168 ~~~~~~~~~~~~~~ 181 (440)
.++.+.+++.|..+
T Consensus 94 ~~iv~~Ll~~Gadi 107 (186)
T 3t8k_A 94 TELCKIFLEKGADI 107 (186)
T ss_dssp HHHHHHHHHTTCCS
T ss_pred HHHHHHHHHCCCCC
Confidence 34444455554443
No 339
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=37.53 E-value=84 Score=21.94 Aligned_cols=47 Identities=23% Similarity=0.152 Sum_probs=26.4
Q ss_pred HHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh
Q 047359 52 ALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSGKF 98 (440)
Q Consensus 52 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 98 (440)
.++..+...+..-.|.++++.+.+.+...+..|.-..++.+...|-+
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCE
Confidence 34444444455556666666666655445555555555666666543
No 340
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=37.18 E-value=85 Score=22.21 Aligned_cols=13 Identities=23% Similarity=0.317 Sum_probs=5.1
Q ss_pred hcCChhHHHHHHH
Q 047359 124 KKGDFGAAFDRLN 136 (440)
Q Consensus 124 ~~~~~~~a~~~~~ 136 (440)
+.|+.+.+..+++
T Consensus 11 ~~g~~~~v~~ll~ 23 (156)
T 1bd8_A 11 ARGDVQEVRRLLH 23 (156)
T ss_dssp HHTCHHHHHHHHH
T ss_pred HhCCHHHHHHHHH
Confidence 3344444433333
No 341
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=37.14 E-value=1.2e+02 Score=22.03 Aligned_cols=65 Identities=12% Similarity=0.079 Sum_probs=40.4
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCc--HHHHHHHHHHHHhccCC
Q 047359 292 ELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQ--IDKAIALHIKIEKLKGS 357 (440)
Q Consensus 292 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~ 357 (440)
....++.-|...|+.++|...++++...... ...+...+..++-+.++ .+.+..++..+.+.++-
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 4567888899999999999999988532111 22233344444544322 44566677777665543
No 342
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=37.04 E-value=1.6e+02 Score=23.69 Aligned_cols=27 Identities=11% Similarity=-0.242 Sum_probs=0.0
Q ss_pred ChHhHHHHHHHHHccCCcchHHHHHHH
Q 047359 11 QSDALSLVLDCYSHKGLFMDGLEVYRM 37 (440)
Q Consensus 11 ~~~~~~~li~~~~~~~~~~~A~~~~~~ 37 (440)
+.......+...+..|+.++..++...
T Consensus 11 ~~~~~~~~lH~Aa~~g~~~~~~~~~~~ 37 (285)
T 3d9h_A 11 SSGLVPRGSHMASMDGKQGGMDGSKPA 37 (285)
T ss_dssp ---------------------------
T ss_pred cchHHHHHHHHHhhcCCCCCcccCCCC
Confidence 344445566666677776666665444
No 343
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=36.55 E-value=1.3e+02 Score=22.48 Aligned_cols=169 Identities=13% Similarity=-0.009 Sum_probs=82.7
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHhccc-CCchhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCchhhHHHHHHHHH
Q 047359 81 NKFTWSLVAQILCRSGKFEVVLGLLDSGI-YSSVMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDGAR 159 (440)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 159 (440)
+...-...+..+.+.+..+....+.+.+. ++...-...+.++...++.+.. ..+..+.. .++...-...+.++.
T Consensus 27 ~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~-~~L~~~l~----d~~~~vr~~a~~aL~ 101 (201)
T 3ltj_A 27 SYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAV-EPLIKALK----DEDGWVRQSAAVALG 101 (201)
T ss_dssp CHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGH-HHHHHHTT----CSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHH-HHHHHHHc----CCCHHHHHHHHHHHH
Confidence 33333344444444444333333333333 4444455555666666655433 33333332 255556666666777
Q ss_pred hcCChhhHHHHHHHHHhcCCCCcccccchHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHH
Q 047359 160 RYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEA 239 (440)
Q Consensus 160 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 239 (440)
+.++.+....+ ..+.. .++ ...-...+.++.+.++.+ +...+..+.. .++..+-...+.++...|+. ++
T Consensus 102 ~~~~~~~~~~L-~~~l~---d~~--~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~A~~aL~~~~~~-~~ 170 (201)
T 3ltj_A 102 QIGDERAVEPL-IKALK---DED--WFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGGE-RV 170 (201)
T ss_dssp HHCCGGGHHHH-HHHTT---CSS--HHHHHHHHHHHHHHTCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCSH-HH
T ss_pred HhCcHHHHHHH-HHHHc---CCC--HHHHHHHHHHHHHhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCch-hH
Confidence 77765433333 33332 233 445555666666666543 3333444433 24556666666777766654 34
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 047359 240 IQIYHLISERGITVRDSDYYAFVNVLCKE 268 (440)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 268 (440)
...+..+... ++...-...+.++.+.
T Consensus 171 ~~~L~~~l~d---~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 171 RAAMEKLAET---GTGFARKVAVNYLETH 196 (201)
T ss_dssp HHHHHHHHHH---CCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhC---CCHHHHHHHHHHHHHH
Confidence 5555555443 3444444555555443
No 344
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=36.01 E-value=83 Score=22.30 Aligned_cols=48 Identities=25% Similarity=0.169 Sum_probs=30.4
Q ss_pred HHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh
Q 047359 51 NALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSGKF 98 (440)
Q Consensus 51 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 98 (440)
..++..+...+..-.|.++++.+.+.+...+..|.-.-++.+...|-+
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 345555555555666777777777666555666666666667766654
No 345
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=35.49 E-value=86 Score=22.18 Aligned_cols=14 Identities=29% Similarity=0.349 Sum_probs=6.1
Q ss_pred hcCChHHHHHHHhc
Q 047359 94 RSGKFEVVLGLLDS 107 (440)
Q Consensus 94 ~~~~~~~a~~~~~~ 107 (440)
+.|+.+.+..+++.
T Consensus 11 ~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 11 ARGDVQEVRRLLHR 24 (156)
T ss_dssp HHTCHHHHHHHHHT
T ss_pred HhCCHHHHHHHHHh
Confidence 34444444444443
No 346
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=35.23 E-value=2e+02 Score=24.15 Aligned_cols=100 Identities=11% Similarity=-0.011 Sum_probs=54.6
Q ss_pred CchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCcccccchHHHHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHhHHH
Q 047359 146 PGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGC 225 (440)
Q Consensus 146 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 225 (440)
.|..-++.|..+ +..|+.+.+.. +++.|..++.....-...+...+..|+.+-+..+++. +..++...-.+
T Consensus 16 ~d~~g~t~L~~A-a~~g~~~~v~~----Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~----g~~~~~~~g~t 86 (364)
T 3ljn_A 16 SDDENMEKIHVA-ARKGQTDEVRR----LIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASV----GEVHSLWHGQK 86 (364)
T ss_dssp CCHHHHHHHHHH-HHHTCHHHHHH----HHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHH----CCCCCCBTTBC
T ss_pred cCCCCCCHHHHH-HHcCCHHHHHH----HHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHC----CCCccccCCCC
Confidence 455556655554 56677665544 4456655552122223355666677887666555544 33333322222
Q ss_pred HHHHHhhhccHHHHHHHHHHHHHcCCCCC
Q 047359 226 MLKALSKEGRVKEAIQIYHLISERGITVR 254 (440)
Q Consensus 226 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 254 (440)
.+...+..|+.+-+..+++.....|..++
T Consensus 87 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~ 115 (364)
T 3ljn_A 87 PIHLAVMANKTDLVVALVEGAKERGQMPE 115 (364)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHHHHcCCHHHHHHHHHhccccCCCHH
Confidence 34445567888877777776666565543
No 347
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=34.52 E-value=74 Score=22.23 Aligned_cols=47 Identities=11% Similarity=0.058 Sum_probs=30.8
Q ss_pred HHHHHHHccCCcchHHHHHHHHHhcCCccChHhHHHHHHHHHhccch
Q 047359 17 LVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNEI 63 (440)
Q Consensus 17 ~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 63 (440)
.+++.+...+.+-.|.++++.+.+.+...+..|-...+..+...|-+
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCE
Confidence 45666666677788888888887776555555555555666655543
No 348
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=34.18 E-value=1.8e+02 Score=23.41 Aligned_cols=13 Identities=23% Similarity=0.370 Sum_probs=5.2
Q ss_pred hcCChHHHHHHHh
Q 047359 94 RSGKFEVVLGLLD 106 (440)
Q Consensus 94 ~~~~~~~a~~~~~ 106 (440)
..|+.+.+..+++
T Consensus 40 ~~g~~~~v~~Ll~ 52 (285)
T 3kea_A 40 ADNNVRLVCTLLN 52 (285)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HcCCHHHHHHHHh
Confidence 3444444443333
No 349
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=33.77 E-value=3.7e+02 Score=26.76 Aligned_cols=132 Identities=10% Similarity=-0.061 Sum_probs=75.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhcCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCcccccchHHHHHHHh
Q 047359 117 LVIDFYSKKGDFGAAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVIQKLS 196 (440)
Q Consensus 117 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 196 (440)
.++..+...|..+-|.++...+. .+...--.+..+|...|++++|...|++.- .|+..+ ......
T Consensus 815 ~l~~~L~~~~~~~~a~eL~~~~~------~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA-~gl~~~--~~~~~~------ 879 (950)
T 4gq2_M 815 ELVEKLFLFKQYNACMQLIGWLN------SDPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSH--TSQFAV------ 879 (950)
T ss_dssp HHHHHHHHTTCHHHHHHHGGGCC------SSHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CTTCSS--CCSCGG------
T ss_pred HHHHHHHHhcHHHHHHHHHhhcC------CChHHHHHHHHHHHHcCCHHHHHHHHHHHh-hhcccC--cccccc------
Confidence 36777788888887665443332 233333356778999999999999998764 333332 111100
Q ss_pred hcCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcC
Q 047359 197 DMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRD----SDYYAFVNVLCKEH 269 (440)
Q Consensus 197 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~ 269 (440)
......++..... ......-|..++..+-+.+.++.+.++-+...+.--.-|. ..|..+.++.+..|
T Consensus 880 ----~~~~~~ll~~~e~--~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 880 ----LREFQEIAEKYHH--QNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp ----GHHHHHHHHHTTT--CSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred ----hhhhhhccCcccc--cchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 0111112211111 1112336778888888889999888888887764222222 35566666655443
No 350
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=33.60 E-value=67 Score=22.79 Aligned_cols=46 Identities=17% Similarity=0.159 Sum_probs=30.2
Q ss_pred HHHHHHHccCCcchHHHHHHHHHhcCCccChHhHHHHHHHHHhccc
Q 047359 17 LVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVSACNALLDALYRQNE 62 (440)
Q Consensus 17 ~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 62 (440)
.++..+...+.+-.|.++++.+.+.+...+..|-...+..+...|-
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Gl 63 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGE 63 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCC
Confidence 4566666666777888888888776655565555555555555554
No 351
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=33.58 E-value=1.2e+02 Score=21.14 Aligned_cols=65 Identities=12% Similarity=0.070 Sum_probs=40.5
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCC--cHHHHHHHHHHHHhccCC
Q 047359 292 ELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNR--QIDKAIALHIKIEKLKGS 357 (440)
Q Consensus 292 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~ 357 (440)
....++.-|...|+.++|...++++...... .......+..++-+.+ ..+....++..+.+.|+-
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 3567888899999999999999988532111 2223334444454443 245566777777665543
No 352
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=33.17 E-value=1.6e+02 Score=22.51 Aligned_cols=19 Identities=5% Similarity=-0.092 Sum_probs=8.3
Q ss_pred cCCCHHHHHHHHHHHHhcC
Q 047359 302 GKGKWKEVEELLSAVLDKG 320 (440)
Q Consensus 302 ~~~~~~~a~~~~~~~~~~~ 320 (440)
..|+.+-+..+++.+.+.|
T Consensus 163 ~~~~~~~~~~i~~~Ll~~g 181 (232)
T 2rfa_A 163 LQPNKTFACQMYNLLLSYD 181 (232)
T ss_dssp TCSCHHHHHHHHHHHHHTT
T ss_pred HcCChHHHHHHHHHHHhcC
Confidence 3444444444444444443
No 353
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=32.41 E-value=1.5e+02 Score=27.19 Aligned_cols=27 Identities=11% Similarity=0.067 Sum_probs=13.8
Q ss_pred HhHHHHHHHHHhccchhHHHHHHHHHH
Q 047359 48 SACNALLDALYRQNEIRLASCLYGAMV 74 (440)
Q Consensus 48 ~~~~~ll~~~~~~~~~~~a~~~~~~~~ 74 (440)
.....++..|.+.|-.+.|.++++.+-
T Consensus 517 dd~e~vL~iCa~l~L~~~ar~I~k~~g 543 (570)
T 3f3f_C 517 DDIEWMLSICVEWRLPEIAKEIYTTLG 543 (570)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 334445555555555555555555543
No 354
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=32.38 E-value=3.2e+02 Score=25.71 Aligned_cols=80 Identities=13% Similarity=-0.050 Sum_probs=38.3
Q ss_pred HHHHHhhcCcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH---h
Q 047359 191 VIQKLSDMGKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLC---K 267 (440)
Q Consensus 191 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---~ 267 (440)
....+.-.|+++.|.+++-.. ...+.+++...+..|.-.+- ...++.. . .+ .| ..-+..|+..|. +
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~---~~~lls~-~-~~-~~-~lN~arLI~~Yt~~F~ 368 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI---DSSTRLT-K-KP-KR-DIRFANILANYTKSFR 368 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC------------------------CHHHHHHHHHTTTT
T ss_pred HHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC---CCccccc-C-CC-cc-cccHHHHHHHHHHHhh
Confidence 455666778888888877654 12344444444443332221 1111100 0 00 11 223666776665 3
Q ss_pred cCChHHHHHHHHHH
Q 047359 268 EHQPEEVCGLLRDV 281 (440)
Q Consensus 268 ~~~~~~a~~~~~~~ 281 (440)
..++.+|.+++-.+
T Consensus 369 ~td~~~Al~Y~~li 382 (661)
T 2qx5_A 369 YSDPRVAVEYLVLI 382 (661)
T ss_dssp TTCHHHHHHHHHGG
T ss_pred cCCHHHHHHHHHHH
Confidence 56777777776655
No 355
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=31.78 E-value=28 Score=25.75 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=14.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHh
Q 047359 116 NLVIDFYSKKGDFGAAFDRLNEMC 139 (440)
Q Consensus 116 ~~li~~~~~~~~~~~a~~~~~~~~ 139 (440)
..++.-|...++.++|...++++.
T Consensus 14 ~~ii~EYf~~~D~~Ea~~~l~eL~ 37 (165)
T 2rg8_A 14 TPIIQEYFEHGDTNEVAEMLRDLN 37 (165)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhC
Confidence 345555666666666666666654
No 356
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=31.07 E-value=1.1e+02 Score=19.97 Aligned_cols=32 Identities=9% Similarity=0.121 Sum_probs=13.8
Q ss_pred cHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhcc
Q 047359 200 KTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGR 235 (440)
Q Consensus 200 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 235 (440)
..++|.++++.+...|+. .|..++.++...|.
T Consensus 52 ~~~~ar~Lld~L~~rG~~----Af~~F~~aL~et~~ 83 (97)
T 3ygs_P 52 RRDQARQLIIDLETRGSQ----ALPLFISCLEDTGQ 83 (97)
T ss_dssp HHHHHHHHHHHHTTSCTT----HHHHHHHHHHTTTC
T ss_pred hHHHHHHHHHHHHHcChH----HHHHHHHHHHHcCc
Confidence 344444444444444332 44444444443333
No 357
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=30.80 E-value=89 Score=18.74 Aligned_cols=45 Identities=13% Similarity=0.172 Sum_probs=24.6
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhc
Q 047359 363 YDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHL 407 (440)
Q Consensus 363 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 407 (440)
++-++..++...-.+.++..++++.+.|..+...|..-++.+++.
T Consensus 5 ~~Qll~l~Aed~AieDaiy~L~~aL~~g~I~l~~ylK~vR~LaRe 49 (65)
T 2f6m_A 5 LNQLYNLVAQDYALTDTIEALSRMLHRGTIPLDTFVKQGRELARQ 49 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 344455555555556666666666666555555555555555443
No 358
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=30.68 E-value=3.1e+02 Score=24.90 Aligned_cols=15 Identities=7% Similarity=0.076 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHcCC
Q 047359 237 KEAIQIYHLISERGI 251 (440)
Q Consensus 237 ~~a~~~~~~~~~~~~ 251 (440)
++|+.+...|+..|.
T Consensus 417 eeaE~iVAkmI~dG~ 431 (523)
T 4b4t_S 417 QTVEYMVSRAIRDGV 431 (523)
T ss_dssp SCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcCC
Confidence 456667777766654
No 359
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=30.21 E-value=1.6e+02 Score=21.62 Aligned_cols=22 Identities=9% Similarity=0.040 Sum_probs=9.8
Q ss_pred HHHHHHHhcCChhhHHHHHHHH
Q 047359 153 SILDGARRYEKTEVSDRIVGLM 174 (440)
Q Consensus 153 ~l~~~~~~~~~~~~a~~~~~~~ 174 (440)
.++.-|...++.++|...++++
T Consensus 15 ~ii~EYf~~~D~~Ea~~~l~eL 36 (165)
T 2rg8_A 15 PIIQEYFEHGDTNEVAEMLRDL 36 (165)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHh
Confidence 3344444444444444444443
No 360
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=29.06 E-value=42 Score=19.66 Aligned_cols=24 Identities=4% Similarity=0.033 Sum_probs=17.0
Q ss_pred cCChhHHHHHHHHHhcCCCCCCch
Q 047359 125 KGDFGAAFDRLNEMCNGRNLTPGF 148 (440)
Q Consensus 125 ~~~~~~a~~~~~~~~~~~~~~p~~ 148 (440)
.-|++.|...|.++.....++|+.
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~eA 56 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEVA 56 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHH
Confidence 457888899998887635566554
No 361
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=28.01 E-value=66 Score=24.75 Aligned_cols=19 Identities=0% Similarity=0.151 Sum_probs=10.0
Q ss_pred HHHHhhcCcHHHHHHHHHH
Q 047359 192 IQKLSDMGKTYAAEMIFKR 210 (440)
Q Consensus 192 ~~~~~~~~~~~~a~~~~~~ 210 (440)
+...++.|+.+....+++.
T Consensus 6 L~~A~~~g~~~~v~~Ll~~ 24 (228)
T 2dzn_A 6 LHQACMENEFFKVQELLHS 24 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHhc
Confidence 3444555666555555544
No 362
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=28.01 E-value=1.9e+02 Score=21.58 Aligned_cols=25 Identities=8% Similarity=-0.185 Sum_probs=12.8
Q ss_pred HHHHHHHHHhcc-cHHHHHHHHHHHH
Q 047359 397 FVIVVSRLCHLK-ELRKAMKNHDEML 421 (440)
Q Consensus 397 ~~~l~~~~~~~g-~~~~a~~~~~~m~ 421 (440)
..-+...+.+.| .++.+..+++++.
T Consensus 139 ~~K~~~~L~rrGF~~~~I~~vl~~l~ 164 (177)
T 3e3v_A 139 QNKIKQSLLTKGFSYDIIDTIIQELD 164 (177)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHCc
Confidence 344455555555 4455555555543
No 363
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=27.29 E-value=1.7e+02 Score=26.82 Aligned_cols=74 Identities=12% Similarity=0.065 Sum_probs=34.8
Q ss_pred ccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHH
Q 047359 234 GRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEV 309 (440)
Q Consensus 234 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 309 (440)
.+.+......+++..+-+.-+..-...++..|.+.|-.+.|.++++.+-.+-.. +...+ .-+..|.++|+++.+
T Consensus 495 ~~~~~gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~-~g~~g-eAL~~f~rA~~~~~V 568 (570)
T 3f3f_C 495 GTRSAKKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLS-AHNII-ESIANFSRAGKYELV 568 (570)
T ss_dssp SCHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC--------------------------
T ss_pred cchhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH-CccHH-HHHHHHHHcCChhhc
Confidence 344555566666665543335566777888888888888888888887655332 33344 445577788877764
No 364
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=27.02 E-value=1.9e+02 Score=21.44 Aligned_cols=28 Identities=11% Similarity=0.277 Sum_probs=14.8
Q ss_pred HHHHhhhccHHHHHHHHHHHHHcCCCCC
Q 047359 227 LKALSKEGRVKEAIQIYHLISERGITVR 254 (440)
Q Consensus 227 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 254 (440)
+...+..|+.+.-.++.+.+.+.|..++
T Consensus 42 Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn 69 (186)
T 3t8k_A 42 LYDVLRNNNDEARYKISMFLINKGADIK 69 (186)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHTTCCSS
T ss_pred HHHHHHcCCcchHHHHHHHHHHCCCCCC
Confidence 3344445555555555666666655444
No 365
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=26.71 E-value=2.2e+02 Score=21.86 Aligned_cols=35 Identities=17% Similarity=0.116 Sum_probs=17.1
Q ss_pred CcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhc
Q 047359 199 GKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEG 234 (440)
Q Consensus 199 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 234 (440)
.+.+.|+-++.+|.+.| .|.-..-..++.+.-..|
T Consensus 28 SDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 28 SDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp TCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTG
T ss_pred CCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Confidence 45555555555555555 444433444444443333
No 366
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=26.43 E-value=96 Score=23.11 Aligned_cols=53 Identities=15% Similarity=0.097 Sum_probs=33.7
Q ss_pred ccChHhHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 047359 44 VPAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSGK 97 (440)
Q Consensus 44 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 97 (440)
.|....++.++..++...-.+.++..+.+..+.| ..+..+|..-++.+++..-
T Consensus 108 ~~~~~l~~Qll~l~Aed~AieDaIy~L~~al~~g-~I~ld~ylK~vR~LaReQF 160 (174)
T 2p22_A 108 VAKTDGLNQLYNLVAQDYALTDTIECLSRMLHRG-TIPLDTFVKQGRELARQQF 160 (174)
T ss_dssp ECSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHH
Confidence 3455556777777777777777777777777766 3466666666666555433
No 367
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=26.36 E-value=2.2e+02 Score=21.82 Aligned_cols=55 Identities=13% Similarity=0.126 Sum_probs=23.6
Q ss_pred cCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCc-----HHHHHHHHHHHHHcCCC
Q 047359 337 SNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGR-----MEEAVRIFDYMKELKVV 392 (440)
Q Consensus 337 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-----~~~a~~~~~~~~~~~~~ 392 (440)
+..+.+.|+-.+.+|++.| .|....-..++.+....|. ...|...++.....|.+
T Consensus 26 RGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 85 (204)
T 2r9g_A 26 RGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLP 85 (204)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTT
T ss_pred hcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 3445555555555555555 4333333333333333332 22333344444444544
No 368
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=25.55 E-value=2.3e+02 Score=21.69 Aligned_cols=21 Identities=14% Similarity=-0.035 Sum_probs=9.5
Q ss_pred CcHHHHHHHHHHHHhcCCCCC
Q 047359 199 GKTYAAEMIFKRACDEKIELQ 219 (440)
Q Consensus 199 ~~~~~a~~~~~~~~~~~~~~~ 219 (440)
.|.+.|+-++.+|.+.|-.|.
T Consensus 21 SDpDAAly~LaRMl~~GEDp~ 41 (201)
T 3bge_A 21 SAPDAALYWYARILTAGGDPL 41 (201)
T ss_dssp TCHHHHHHHHHHHHHTTCCHH
T ss_pred CCHHHHHHHHHHHHHcCCCHH
Confidence 344444444444444444433
No 369
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=24.97 E-value=3.6e+02 Score=23.82 Aligned_cols=140 Identities=11% Similarity=0.060 Sum_probs=72.1
Q ss_pred cHHHHHHHHHHHHhc--------CCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCC----CChhhHHHHHHHHHh
Q 047359 200 KTYAAEMIFKRACDE--------KIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGIT----VRDSDYYAFVNVLCK 267 (440)
Q Consensus 200 ~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~ 267 (440)
..++...++...... ++..+......++.. ..|+...++.+++.+...... ....+...+-.+..+
T Consensus 166 ~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~--~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~~ 243 (447)
T 3pvs_A 166 STEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAEL--VNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGE 243 (447)
T ss_dssp CHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHH--HCSCHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccccCCCCccCHHHHHHHHhh
Confidence 456666677666542 234455566656554 468888888888887654220 011222222222211
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHH---HcCCCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCc----
Q 047359 268 EHQPEEVCGLLRDVVERGYIPCAMELSRFVASQ---CGKGKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQ---- 340 (440)
Q Consensus 268 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---- 340 (440)
... ....+......++.++ .+.++.+.|..++.+|.+.|..|....-..+..+...-|.
T Consensus 244 ~~~--------------~~dk~gd~~yd~isal~ksirgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~ 309 (447)
T 3pvs_A 244 RSA--------------RFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPR 309 (447)
T ss_dssp CCC--------------C---CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTH
T ss_pred hhh--------------ccCCccchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChh
Confidence 100 0001111122233333 2347889999999999998887766555555555555443
Q ss_pred -HHHHHHHHHHHHhcc
Q 047359 341 -IDKAIALHIKIEKLK 355 (440)
Q Consensus 341 -~~~a~~~~~~~~~~~ 355 (440)
...|...++.....|
T Consensus 310 a~~~~~~~~~~~~~~g 325 (447)
T 3pvs_A 310 AMQVAIAAWDCFTRVG 325 (447)
T ss_dssp HHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhC
Confidence 233444444444444
No 370
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=24.96 E-value=2.6e+02 Score=22.26 Aligned_cols=216 Identities=8% Similarity=-0.016 Sum_probs=106.8
Q ss_pred cChHhHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC----hHHHHHHHhcc-c--CCchhHHH
Q 047359 45 PAVSACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFTWSLVAQILCRSGK----FEVVLGLLDSG-I--YSSVMYNL 117 (440)
Q Consensus 45 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~a~~~~~~~-~--~~~~~~~~ 117 (440)
++...-...+..+...+. ..+...+..+.+ .++...-...+.++.+.|. ......++... . ++...-..
T Consensus 35 ~~~~vr~~A~~~L~~~~~-~~~~~~L~~~l~---d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~d~~~~vr~~ 110 (280)
T 1oyz_A 35 HNSLKRISSARVLQLRGG-QDAVRLAIEFCS---DKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALNDKSACVRAT 110 (280)
T ss_dssp SSHHHHHHHHHHHHHHCC-HHHHHHHHHHHT---CSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHHCSCHHHHHH
T ss_pred CCHHHHHHHHHHHHccCC-chHHHHHHHHHc---CCCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhcCCCHHHHHH
Confidence 344444445555555554 334444444444 3455555555666666653 22333344321 1 55555555
Q ss_pred HHHHHHhcCC-----hhHHHHHHHHHhcCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCcccccchHHHH
Q 047359 118 VIDFYSKKGD-----FGAAFDRLNEMCNGRNLTPGFSTYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKHFLSGNDYVI 192 (440)
Q Consensus 118 li~~~~~~~~-----~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~ 192 (440)
.+.++...+. ...+...+..... .|+...-...+.++.+.++.+ +...+..+.+. ++ ...-...+
T Consensus 111 a~~aL~~l~~~~~~~~~~~~~~L~~~l~----d~~~~vR~~a~~aL~~~~~~~-~~~~L~~~l~d---~~--~~vr~~a~ 180 (280)
T 1oyz_A 111 AIESTAQRCKKNPIYSPKIVEQSQITAF----DKSTNVRRATAFAISVINDKA-TIPLLINLLKD---PN--GDVRNWAA 180 (280)
T ss_dssp HHHHHHHHHHHCGGGHHHHHHHHHHHTT----CSCHHHHHHHHHHHHTC---C-CHHHHHHHHTC---SS--HHHHHHHH
T ss_pred HHHHHHHHhccCCcccHHHHHHHHHHhh----CCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHcC---CC--HHHHHHHH
Confidence 5555555441 3345555544433 256666666667777777644 33334344332 33 33444455
Q ss_pred HHHhhcC-cHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhccHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh
Q 047359 193 QKLSDMG-KTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGRVKEAIQIYHLISERGITVRDSDYYAFVNVLCKEHQP 271 (440)
Q Consensus 193 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 271 (440)
.++...+ +...+...+..+.+ .++..+-...+.++.+.|+......+.. ..+. ++ .-...+.++.+.|..
T Consensus 181 ~aL~~~~~~~~~~~~~L~~~l~---d~~~~vR~~A~~aL~~~~~~~~~~~L~~-~l~d---~~--vr~~a~~aL~~i~~~ 251 (280)
T 1oyz_A 181 FAININKYDNSDIRDCFVEMLQ---DKNEEVRIEAIIGLSYRKDKRVLSVLCD-ELKK---NT--VYDDIIEAAGELGDK 251 (280)
T ss_dssp HHHHHHTCCCHHHHHHHHHHTT---CSCHHHHHHHHHHHHHTTCGGGHHHHHH-HHTS---SS--CCHHHHHHHHHHCCG
T ss_pred HHHHhhccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHhCCHhhHHHHHH-HhcC---cc--HHHHHHHHHHhcCch
Confidence 5555554 23344444444443 3466666667777777776543333333 3332 22 234456667777764
Q ss_pred HHHHHHHHHHHHc
Q 047359 272 EEVCGLLRDVVER 284 (440)
Q Consensus 272 ~~a~~~~~~~~~~ 284 (440)
.+...+..+.+.
T Consensus 252 -~~~~~L~~~l~~ 263 (280)
T 1oyz_A 252 -TLLPVLDTMLYK 263 (280)
T ss_dssp -GGHHHHHHHHTT
T ss_pred -hhhHHHHHHHhc
Confidence 555566665543
No 371
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=24.91 E-value=1.6e+02 Score=21.95 Aligned_cols=49 Identities=12% Similarity=0.156 Sum_probs=27.0
Q ss_pred HHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcc
Q 047359 360 VATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLK 408 (440)
Q Consensus 360 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 408 (440)
...++-++..++...-.+.++..+.++...|..+...|.--++.+++..
T Consensus 111 ~~l~~Qll~l~Aed~AieDaIy~L~~al~~g~I~ld~ylK~vR~LaReQ 159 (174)
T 2p22_A 111 TDGLNQLYNLVAQDYALTDTIECLSRMLHRGTIPLDTFVKQGRELARQQ 159 (174)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 3344555555555555666666666666555555555555555554443
No 372
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=24.37 E-value=1.3e+02 Score=19.50 Aligned_cols=19 Identities=32% Similarity=0.422 Sum_probs=8.8
Q ss_pred HHHHHHHhcCcHHHHHHHH
Q 047359 365 VLLDGLFKDGRMEEAVRIF 383 (440)
Q Consensus 365 ~l~~~~~~~g~~~~a~~~~ 383 (440)
-....+.+.|++++|++..
T Consensus 20 RrAe~ll~~gkydeAIech 38 (97)
T 2crb_A 20 RRADRLLAAGKYEEAISCH 38 (97)
T ss_dssp HHHHHHHHTTCHHHHHHHH
T ss_pred hHHHHHHhcCCHHHHHHHH
Confidence 3344444455555554443
No 373
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=24.19 E-value=3e+02 Score=22.67 Aligned_cols=277 Identities=13% Similarity=0.039 Sum_probs=116.9
Q ss_pred HHHHHHHHccCCcchHHHHHHHHHhcCCccChH----hHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhh--HHHHH
Q 047359 16 SLVLDCYSHKGLFMDGLEVYRMMRVYGFVPAVS----ACNALLDALYRQNEIRLASCLYGAMVRDGVSPNKFT--WSLVA 89 (440)
Q Consensus 16 ~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~ 89 (440)
+..+...++.|+.+-...++ +.|..++.. -++. +...+..|+.+ +.+.+++.|..|+... ....+
T Consensus 26 ~t~L~~Av~~g~~~~V~~LL----~~Gadvn~~~~~~g~Tp-Lh~A~~~g~~~----iv~~Ll~~ga~~~~~~~~~~~~~ 96 (337)
T 4g8k_A 26 NHLLIKAVQNEDVDLVQQLL----EGGANVNFQEEEGGWTP-LHNAVQMSRED----IVELLLRHGADPVLRKKNGATPF 96 (337)
T ss_dssp HHHHHHHHHTTCHHHHHHHH----HHTCCTTCCCTTTCCCH-HHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCCCHH
T ss_pred ChHHHHHHHcCCHHHHHHHH----HCCCCCCccCCCCCcCH-HHHHHHcCCHH----HHHHHHHcCCchhhhccCCCchh
Confidence 34455557788876555544 445444422 1233 33445667654 4445556665443221 11122
Q ss_pred HHHHhcCChHHHHHHHhccc----CCchhHHHHHHHHHhcCChhHHHHHHHHHhcCCCC---------CCchhhHHHHHH
Q 047359 90 QILCRSGKFEVVLGLLDSGI----YSSVMYNLVIDFYSKKGDFGAAFDRLNEMCNGRNL---------TPGFSTYSSILD 156 (440)
Q Consensus 90 ~~~~~~~~~~~a~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~---------~p~~~~~~~l~~ 156 (440)
......+.......+..... .+..-++.+ ...+..|..+-+..+++.-.. ... ..+..-.+.|.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l-~~A~~~~~~~~~~~ll~~ga~-~~~~~~~~~~~~~~~~~g~T~L~- 173 (337)
T 4g8k_A 97 ILAAIAGSVKLLKLFLSKGADVNECDFYGFTAF-MEAAVYGKVKALKFLYKRGAN-VNLRRKTKEDQERLRKGGATALM- 173 (337)
T ss_dssp HHHHHHTCHHHHHHHHTTTCCTTCBCTTCCBHH-HHHHHTTCHHHHHHHHHTTCC-TTCCCCCC-----CTTCSCCHHH-
T ss_pred HHHHhcccchhhHHhhhccchhhhhccCCCCHH-HHHHHcCcHHHHHHHHHcCCC-cchhhccccccccccCCCCcHHH-
Confidence 22333444444444443332 222222222 233455665544444432111 000 00111122233
Q ss_pred HHHhcCChhhHHHHHHHHHhcCCCCccc-ccchHHHHHHH--hhcCcHHHHHHHHHHHHhcCCCCCHHh--HHHHHHHHh
Q 047359 157 GARRYEKTEVSDRIVGLMVEKKLLPKHF-LSGNDYVIQKL--SDMGKTYAAEMIFKRACDEKIELQDDT--CGCMLKALS 231 (440)
Q Consensus 157 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~ 231 (440)
..+..|+.+-+..+++ +.|..++.. ....+.+..+. ...+..+. +.+.+.+.|..++... -.+.+...+
T Consensus 174 ~A~~~g~~~~v~~LL~---~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~---i~~lLl~~gad~n~~d~~g~t~L~~a~ 247 (337)
T 4g8k_A 174 DAAEKGHVEVLKILLD---EMGADVNACDNMGRNALIHALLSSDDSDVEA---ITHLLLDHGADVNVRGERGKTPLILAV 247 (337)
T ss_dssp HHHHHTCHHHHHHHHH---HSCCCTTCCCTTSCCHHHHHHHHSCTTTHHH---HHHHHHHTTCCTTCCCGGGCCHHHHHH
T ss_pred HHHHCCCHHHHHHHHh---ccCCCcCccCCCCCcHHHHHHHHcCcccHHH---HHHHHHHCCCCCCCcCCCCCCHHHHHH
Confidence 3345677655444433 234333210 11222233222 22233333 3344455555443321 122344455
Q ss_pred hhccHHHHHHHHHHHHHcCCCCC---hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHH
Q 047359 232 KEGRVKEAIQIYHLISERGITVR---DSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKE 308 (440)
Q Consensus 232 ~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 308 (440)
..|..+.+..+++. .|..++ ..-.+.|. ..++.|+.+ +.+.+.+.|..++..+ . +...++.|+.+
T Consensus 248 ~~~~~~~v~~Ll~~---~~~~vn~~d~~G~TpL~-~A~~~g~~~----iv~~Ll~~GAd~n~~~--~-L~~A~~~~~~~- 315 (337)
T 4g8k_A 248 EKKHLGLVQRLLEQ---EHIEINDTDSDGKTALL-LAVELKLKK----IAELLCKRGASTDCGD--L-VMTARRNYDHS- 315 (337)
T ss_dssp HTTCHHHHHHHHTS---TTCCTTCBCTTSCBHHH-HHHHTTCHH----HHHHHHTTSCSSTTCC--H-HHHHHHTTCHH-
T ss_pred HhhhhHHHHHHHHh---cCCcccCcCCCCCCHHH-HHHHcCCHH----HHHHHHHCCCCCCCCC--H-HHHHHHcCCHH-
Confidence 66776655544331 232222 11122333 334556654 4455566776676654 2 33344567654
Q ss_pred HHHHHHHHHhcCCCCch
Q 047359 309 VEELLSAVLDKGLLLDS 325 (440)
Q Consensus 309 a~~~~~~~~~~~~~~~~ 325 (440)
+.+.+.+.|-.||.
T Consensus 316 ---iv~~Ll~~GA~~d~ 329 (337)
T 4g8k_A 316 ---LVKVLLSHGAKEDF 329 (337)
T ss_dssp ---HHHHHHHTTCCC--
T ss_pred ---HHHHHHHCcCCCCC
Confidence 44555667766664
No 374
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=23.98 E-value=1.8e+02 Score=19.88 Aligned_cols=77 Identities=17% Similarity=0.148 Sum_probs=42.7
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHh-ccCCcCHHhHHHHHHHHHhcCcHHHHHHH
Q 047359 304 GKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEK-LKGSLDVATYDVLLDGLFKDGRMEEAVRI 382 (440)
Q Consensus 304 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 382 (440)
.++.+|..-+++.... .+|......++..+.. -++.++++.+...+ .|+ .+.++...+....+.|-.+.. +.
T Consensus 2 ~~~~~al~~L~e~~~~--~~~~~~~dg~i~~fe~--t~Elawk~~k~~l~~~g~--~~~s~rd~~r~a~~~glI~~~-~~ 74 (119)
T 1wty_A 2 ASLARAVERLKAALER--PKDEFIRDSAIQRFEF--TFELAWKTLKTFLELQGL--EARSPRAAIRGAFQVGLLPED-PF 74 (119)
T ss_dssp CCHHHHHHHHHHHHSS--CCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTC--CCSSHHHHHHHHHHHTSSCCC-HH
T ss_pred hHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHcCC--CCCCHHHHHHHHHHcCCCCcH-HH
Confidence 3567777777777654 3455555555554433 24555665555553 344 355666666666666655444 34
Q ss_pred HHHHH
Q 047359 383 FDYMK 387 (440)
Q Consensus 383 ~~~~~ 387 (440)
+..|.
T Consensus 75 w~~m~ 79 (119)
T 1wty_A 75 WLEML 79 (119)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 375
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=23.65 E-value=2.6e+02 Score=21.74 Aligned_cols=22 Identities=18% Similarity=0.181 Sum_probs=13.1
Q ss_pred HHHHHhcCChhHHHHHHHHHhc
Q 047359 119 IDFYSKKGDFGAAFDRLNEMCN 140 (440)
Q Consensus 119 i~~~~~~~~~~~a~~~~~~~~~ 140 (440)
+..|.+.|.+++|.+++++...
T Consensus 121 V~VCiek~~f~kA~eiLkr~~~ 142 (235)
T 3bu8_A 121 VIICIKNKEFEKASKILKKHMS 142 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHST
T ss_pred HHHHHHhcchHHHHHHHHHHhc
Confidence 3455666666666666666643
No 376
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=23.48 E-value=4.1e+02 Score=23.94 Aligned_cols=71 Identities=13% Similarity=-0.014 Sum_probs=44.6
Q ss_pred HHHcCCcHHHHHHHHHHHHhccCCcCHHhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCchhhHHHHHHHHH
Q 047359 334 YYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFKDGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLC 405 (440)
Q Consensus 334 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 405 (440)
..-.....+.|...|.++....+. +...|+.|.-.....|+.-+|.-.|-+......+-+.+...+...+.
T Consensus 161 L~RY~~~~~~A~~~Y~~A~~~~P~-~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 161 IARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCC-CCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence 333445567778888777776443 56677777777777777777666666555554445555555555544
No 377
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=23.14 E-value=3.6e+02 Score=23.24 Aligned_cols=58 Identities=19% Similarity=0.048 Sum_probs=35.0
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhcC----------------CCCchhhhHHHHHHHHcCCcHHHHHHHHHHHHh
Q 047359 296 FVASQCGKGKWKEVEELLSAVLDKG----------------LLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEK 353 (440)
Q Consensus 296 l~~~~~~~~~~~~a~~~~~~~~~~~----------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 353 (440)
++.......+.+++.+.++.+...- ..+.......+.+.|...|+.+.|..++++...
T Consensus 82 ~~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~ 155 (393)
T 4b4t_O 82 LLASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEK 155 (393)
T ss_dssp THHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3445556677888888877663221 011223344555667777888888877777653
No 378
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=22.56 E-value=4.4e+02 Score=23.96 Aligned_cols=30 Identities=10% Similarity=0.140 Sum_probs=17.8
Q ss_pred hHHHHHHHHhhhccHHHHHHHHHHHHHcCC
Q 047359 222 TCGCMLKALSKEGRVKEAIQIYHLISERGI 251 (440)
Q Consensus 222 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 251 (440)
....+-..|.+.+++-.|-+++..+-..+.
T Consensus 219 ~~dLLWryy~k~~~~~~AA~VL~~LA~s~~ 248 (525)
T 3i5p_A 219 ISNILWVYYSRRSKFFESAEILYRLATSNF 248 (525)
T ss_dssp HHHHHHTHHHHCCSHHHHHHHHHHHHSSSS
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhCCC
Confidence 344445556666666666666666665543
No 379
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=22.36 E-value=2.6e+02 Score=21.33 Aligned_cols=33 Identities=9% Similarity=-0.237 Sum_probs=18.3
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhhhHHHHHHHH
Q 047359 304 GKWKEVEELLSAVLDKGLLLDSFCCSSLMEYYC 336 (440)
Q Consensus 304 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 336 (440)
.+.+.|+..+-+|++.|..|....-..++.+.-
T Consensus 21 SDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsE 53 (201)
T 3bge_A 21 SAPDAALYWYARILTAGGDPLYVARRLLAIASE 53 (201)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 566666666666666665554444444444433
No 380
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=21.80 E-value=1.9e+02 Score=19.85 Aligned_cols=19 Identities=11% Similarity=-0.003 Sum_probs=9.3
Q ss_pred HHhcCcHHHHHHHHHHHHH
Q 047359 370 LFKDGRMEEAVRIFDYMKE 388 (440)
Q Consensus 370 ~~~~g~~~~a~~~~~~~~~ 388 (440)
+...++++.|.++...+..
T Consensus 71 al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 71 ELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 3344555555555544443
No 381
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=21.74 E-value=1.8e+02 Score=25.79 Aligned_cols=61 Identities=13% Similarity=0.047 Sum_probs=35.7
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCchh--------hhH-HHHHHHHcCCcHHHHHHHHHHHH
Q 047359 292 ELSRFVASQCGKGKWKEVEELLSAVLDKGLLLDSF--------CCS-SLMEYYCSNRQIDKAIALHIKIE 352 (440)
Q Consensus 292 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--------~~~-~l~~~~~~~~~~~~a~~~~~~~~ 352 (440)
..+.+...|.+.++...+..+++.+...+..|+.. +|. .+.+.+...+++.+|.+.+.++.
T Consensus 178 l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~ 247 (455)
T 3t5v_B 178 LVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAF 247 (455)
T ss_dssp HHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHH
Confidence 45566777777888888888887777665533222 222 22334455666666666555443
No 382
>1jog_A Hypothetical protein HI0074; structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: a.24.16.2
Probab=21.67 E-value=2.3e+02 Score=20.31 Aligned_cols=47 Identities=11% Similarity=0.075 Sum_probs=26.4
Q ss_pred hHHHHHHHHHhcCCCCCC---chhhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 047359 129 GAAFDRLNEMCNGRNLTP---GFSTYSSILDGARRYEKTEVSDRIVGLMVE 176 (440)
Q Consensus 129 ~~a~~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 176 (440)
+.++++.....+..|..| ++.++..+++...+.|-.+.. +.+..|..
T Consensus 55 Elawk~~k~~L~~~g~~~~~~~~~s~rd~~r~a~~~GlI~d~-~~w~~m~~ 104 (146)
T 1jog_A 55 ELSLKMMKRQLQQDAINTDDIGAYGFKDILREALRFGLIGDM-SKWVAYRD 104 (146)
T ss_dssp HHHHHHHHHHHHHHTCSCCCTTSCCHHHHHHHHHHTTSCSCH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCccccCCCCHHHHHHHHHHcCCCCcH-HHHHHHHH
Confidence 445555555444344443 355677777777777777666 34444443
No 383
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=21.35 E-value=6e+02 Score=25.10 Aligned_cols=87 Identities=11% Similarity=-0.066 Sum_probs=47.8
Q ss_pred HHHHHHHhccc---hhHHHHHHHHHHHcC----CCCChhhHHHHHHHHHhcCChHHHHHHHhccc--CCchhHHHHHHHH
Q 047359 52 ALLDALYRQNE---IRLASCLYGAMVRDG----VSPNKFTWSLVAQILCRSGKFEVVLGLLDSGI--YSSVMYNLVIDFY 122 (440)
Q Consensus 52 ~ll~~~~~~~~---~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~li~~~ 122 (440)
.++...++.|. .+.|.+.|+.....+ ++||.. ..+...-.+.|..++-..+++... .+..--..++.++
T Consensus 691 ~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr--~~vy~~~~~~g~~~~~~~l~~~~~~~~~~~ek~~ll~aL 768 (909)
T 4fke_A 691 NAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLR--STIYCNAIAQGGQDQWDFAWGQLQQAQLVNEADKLRSAL 768 (909)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTH--HHHHHHHHHHSCHHHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHccCCHHHHHHHHHHh
Confidence 34455555554 556777777765532 444432 233333445566555555555544 2333345566666
Q ss_pred HhcCChhHHHHHHHHHhc
Q 047359 123 SKKGDFGAAFDRLNEMCN 140 (440)
Q Consensus 123 ~~~~~~~~a~~~~~~~~~ 140 (440)
+...+.....++++....
T Consensus 769 ~~~~d~~~l~~~L~~~l~ 786 (909)
T 4fke_A 769 ACSNEVWLLNRYLGYTLN 786 (909)
T ss_dssp TTCCCHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 666777666677766654
No 384
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=21.02 E-value=6.1e+02 Score=25.05 Aligned_cols=24 Identities=8% Similarity=-0.071 Sum_probs=11.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHH
Q 047359 259 YAFVNVLCKEHQPEEVCGLLRDVV 282 (440)
Q Consensus 259 ~~l~~~~~~~~~~~~a~~~~~~~~ 282 (440)
..++.+++...+.....++++...
T Consensus 762 ~~ll~aL~~~~d~~~l~~~L~~~l 785 (909)
T 4fke_A 762 DKLRSALACSNEVWLLNRYLGYTL 785 (909)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHh
Confidence 344555555555555444444443
No 385
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=20.56 E-value=3.4e+02 Score=24.11 Aligned_cols=65 Identities=12% Similarity=-0.001 Sum_probs=43.7
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCcc------cccch-HHHHHHHhhcCcHHHHHHHHHHHHhc
Q 047359 150 TYSSILDGARRYEKTEVSDRIVGLMVEKKLLPKH------FLSGN-DYVIQKLSDMGKTYAAEMIFKRACDE 214 (440)
Q Consensus 150 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~ 214 (440)
..+.+++.|.+.++...+..+++.+...+..|+- ...+| ..+...+...+++.+|.+.+....+.
T Consensus 178 l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~ 249 (455)
T 3t5v_B 178 LVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQS 249 (455)
T ss_dssp HHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHh
Confidence 3567888999999999999999988887654330 01111 23556666777777777776665543
No 386
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=20.47 E-value=1.3e+02 Score=16.87 Aligned_cols=15 Identities=20% Similarity=0.195 Sum_probs=7.6
Q ss_pred cchHHHHHHHHHhcC
Q 047359 28 FMDGLEVYRMMRVYG 42 (440)
Q Consensus 28 ~~~A~~~~~~~~~~~ 42 (440)
..+|+++++.+.+.|
T Consensus 9 v~RaiELle~lq~sg 23 (53)
T 1zl8_A 9 VQRILELMEHVQKTG 23 (53)
T ss_dssp HHHHHHHHHHHGGGS
T ss_pred HHHHHHHHHHHHHcC
Confidence 344555555555544
No 387
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=20.24 E-value=3e+02 Score=21.24 Aligned_cols=95 Identities=8% Similarity=-0.075 Sum_probs=0.0
Q ss_pred hHHHHHHHhhc---CcHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHhhhcc-----HHHHHHHHHHHHHcCCCCChhhHH
Q 047359 188 NDYVIQKLSDM---GKTYAAEMIFKRACDEKIELQDDTCGCMLKALSKEGR-----VKEAIQIYHLISERGITVRDSDYY 259 (440)
Q Consensus 188 ~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~~~~~~~~ 259 (440)
...+|+++.++ .+.+.|+-++.+|.+.|-.|.-..-..++.+.-..|. ...|...++.....|.+--.....
T Consensus 35 HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i~La 114 (213)
T 3ctd_A 35 HFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFPEGLFFLS 114 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTTTTHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHHHHHHH
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH
Q 047359 260 AFVNVLCKEHQPEEVCGLLRDVVE 283 (440)
Q Consensus 260 ~l~~~~~~~~~~~~a~~~~~~~~~ 283 (440)
..+-.++.+-+-..+ ..+....+
T Consensus 115 qaviyLA~APKSNs~-~A~~~A~~ 137 (213)
T 3ctd_A 115 QASLYLAISPKSNST-KSIFKAME 137 (213)
T ss_dssp HHHHHHHHSCCCCGG-GHHHHHHH
T ss_pred HHHHHHHcCCccHHH-HHHHHHHH
Done!