BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047360
(104 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1AVA|A Chain A, Amy2BASI PROTEIN-Protein Complex From Barley Seed
pdb|1AVA|B Chain B, Amy2BASI PROTEIN-Protein Complex From Barley Seed
pdb|1AMY|A Chain A, Crystal And Molecular Structure Of Barley Alpha-Amylase
pdb|1BG9|A Chain A, Barley Alpha-Amylase With Substrate Analogue Acarbose
Length = 403
Score = 55.1 bits (131), Expect = 9e-09, Method: Composition-based stats.
Identities = 23/34 (67%), Positives = 25/34 (73%)
Query: 2 GGWYNFLKKRIPDIANAGTTHVWLPPPSQHAAPQ 35
GGWYNFL ++ DIA AG THVWLPP SQ A Q
Sbjct: 16 GGWYNFLMGKVDDIAAAGITHVWLPPASQSVAEQ 49
>pdb|1RP8|A Chain A, Crystal Structure Of Barley Alpha-Amylase Isozyme 1
(Amy1) Inactive Mutant D180a In Complex With
Maltoheptaose
pdb|1RP9|A Chain A, Crystal Structure Of Barley Alpha-amylase Isozyme 1
(amy1) Inactive Mutant D180a In Complex With Acarbose
Length = 405
Score = 51.6 bits (122), Expect = 1e-07, Method: Composition-based stats.
Identities = 21/35 (60%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
Query: 2 GGWYNFLKKRIPDIANAGTTHVWLPPPSQHAAPQE 36
GGWYN + ++ DIA AG THVWLPPPS H+ E
Sbjct: 17 GGWYNMMMGKVDDIAAAGVTHVWLPPPS-HSVSNE 50
>pdb|1HT6|A Chain A, Crystal Structure At 1.5a Resolution Of The Barley
Alpha- Amylase Isozyme 1
pdb|1P6W|A Chain A, Crystal Structure Of Barley Alpha-Amylase Isozyme 1
(Amy1) In Complex With The Substrate Analogue, Methyl
4i,4ii,4iii- Tri-Thiomaltotetraoside (Thio-Dp4)
pdb|1RPK|A Chain A, Crystal Structure Of Barley Alpha-Amylase Isozyme 1
(Amy1) In Complex With Acarbose
Length = 405
Score = 51.6 bits (122), Expect = 1e-07, Method: Composition-based stats.
Identities = 21/35 (60%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
Query: 2 GGWYNFLKKRIPDIANAGTTHVWLPPPSQHAAPQE 36
GGWYN + ++ DIA AG THVWLPPPS H+ E
Sbjct: 17 GGWYNMMMGKVDDIAAAGVTHVWLPPPS-HSVSNE 50
>pdb|3BSG|A Chain A, Barley Alpha-Amylase Isozyme 1 (Amy1) H395a Mutant
Length = 414
Score = 51.6 bits (122), Expect = 1e-07, Method: Composition-based stats.
Identities = 21/35 (60%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
Query: 2 GGWYNFLKKRIPDIANAGTTHVWLPPPSQHAAPQE 36
GGWYN + ++ DIA AG THVWLPPPS H+ E
Sbjct: 17 GGWYNMMMGKVDDIAAAGVTHVWLPPPS-HSVSNE 50
>pdb|2QPU|A Chain A, Sugar Tongs Mutant S378p In Complex With Acarbose
pdb|2QPU|B Chain B, Sugar Tongs Mutant S378p In Complex With Acarbose
pdb|2QPU|C Chain C, Sugar Tongs Mutant S378p In Complex With Acarbose
Length = 405
Score = 51.6 bits (122), Expect = 1e-07, Method: Composition-based stats.
Identities = 21/35 (60%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
Query: 2 GGWYNFLKKRIPDIANAGTTHVWLPPPSQHAAPQE 36
GGWYN + ++ DIA AG THVWLPPPS H+ E
Sbjct: 17 GGWYNMMMGKVDDIAAAGVTHVWLPPPS-HSVSNE 50
>pdb|2QPS|A Chain A, "sugar Tongs" Mutant Y380a In Complex With Acarbose
Length = 405
Score = 51.6 bits (122), Expect = 1e-07, Method: Composition-based stats.
Identities = 21/35 (60%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
Query: 2 GGWYNFLKKRIPDIANAGTTHVWLPPPSQHAAPQE 36
GGWYN + ++ DIA AG THVWLPPPS H+ E
Sbjct: 17 GGWYNMMMGKVDDIAAAGVTHVWLPPPS-HSVSNE 50
>pdb|3BSH|A Chain A, Barley Alpha-Amylase Isozyme 1 (Amy1) Double Mutant
Y105aY380A IN COMPLEX WITH INHIBITOR ACARBOSE
Length = 414
Score = 51.6 bits (122), Expect = 1e-07, Method: Composition-based stats.
Identities = 21/35 (60%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
Query: 2 GGWYNFLKKRIPDIANAGTTHVWLPPPSQHAAPQE 36
GGWYN + ++ DIA AG THVWLPPPS H+ E
Sbjct: 17 GGWYNMMMGKVDDIAAAGVTHVWLPPPS-HSVSNE 50
>pdb|1MWO|A Chain A, Crystal Structure Analysis Of The Hyperthermostable
Pyrocoocus Woesei Alpha-Amylase
pdb|1MXD|A Chain A, Structure Of A (Ca,Zn)-Dependent Alpha-Amylase From The
Hyperthermophilic Archaeon Pyrococcus Woesei
pdb|1MXG|A Chain A, Crystal Strucutre Of A (Ca,Zn)-Dependent Alpha-Amylase
From The Hyperthermophilic Archaeon Pyrococcus Woesei
In Complex With Acarbose
Length = 435
Score = 38.1 bits (87), Expect = 0.001, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 21/29 (72%)
Query: 2 GGWYNFLKKRIPDIANAGTTHVWLPPPSQ 30
G W++ ++ +IP+ AG + +WLPPPS+
Sbjct: 24 GIWWDHIRSKIPEWYEAGISAIWLPPPSK 52
>pdb|3BC9|A Chain A, Alpha-Amylase B In Complex With Acarbose
pdb|3BCD|A Chain A, Alpha-Amylase B In Complex With Maltotetraose And
Alpha-Cyclodextrin
pdb|3BCF|A Chain A, Alpha-Amylase B From Halothermothrix Orenii
Length = 599
Score = 35.4 bits (80), Expect = 0.009, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 5 YNFLKKRIPDIANAGTTHVWLPPPSQHAA 33
+N L +R P++A AG T VWLPP ++ A
Sbjct: 149 WNLLAERAPELAEAGFTAVWLPPANKGMA 177
>pdb|3QGV|A Chain A, Crystal Structure Of A Thermostable Amylase Variant
Length = 435
Score = 34.7 bits (78), Expect = 0.015, Method: Composition-based stats.
Identities = 10/29 (34%), Positives = 22/29 (75%)
Query: 2 GGWYNFLKKRIPDIANAGTTHVWLPPPSQ 30
G W++ ++++IP+ +AG + +W+PP S+
Sbjct: 24 GIWWDTIRQKIPEWYDAGISAIWIPPASK 52
>pdb|1QPK|A Chain A, Mutant (D193g) Maltotetraose-Forming Exo-Amylase In
Complex With Maltotetraose
Length = 418
Score = 29.6 bits (65), Expect = 0.44, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 4 WYNFLKKRIPDIANAGTTHVWLPPP 28
WYN L+++ IA G + +W+P P
Sbjct: 35 WYNILRQQAATIAADGFSAIWMPVP 59
>pdb|1QI4|A Chain A, Mutant (e219g) Maltotetraose-forming Exo-amylase In
Complex With Maltotetraose
Length = 429
Score = 29.6 bits (65), Expect = 0.44, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 4 WYNFLKKRIPDIANAGTTHVWLPPP 28
WYN L+++ IA G + +W+P P
Sbjct: 35 WYNILRQQAATIAADGFSAIWMPVP 59
>pdb|1JDA|A Chain A, Maltotetraose-Forming Exo-Amylase
pdb|1JDC|A Chain A, Mutant (E219q) Maltotetraose-Forming Exo-Amylase
Cocrystallized With Maltotetraose (Crystal Type 1)
pdb|1JDD|A Chain A, Mutant (E219q) Maltotetraose-Forming Exo-Amylase
Cocrystallized With Maltotetraose (Crystal Type 2)
Length = 429
Score = 29.6 bits (65), Expect = 0.45, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 4 WYNFLKKRIPDIANAGTTHVWLPPP 28
WYN L+++ IA G + +W+P P
Sbjct: 35 WYNILRQQAATIAADGFSAIWMPVP 59
>pdb|2AMG|A Chain A, Structure Of Hydrolase (Glycosidase)
Length = 418
Score = 29.6 bits (65), Expect = 0.46, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 4 WYNFLKKRIPDIANAGTTHVWLPPP 28
WYN L+++ IA G + +W+P P
Sbjct: 35 WYNILRQQAATIAADGFSAIWMPVP 59
>pdb|1QI3|A Chain A, Mutant (D193n) Maltotetraose-Forming Exo-Amylase In
Complex With Maltotetraose
Length = 429
Score = 29.6 bits (65), Expect = 0.46, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 4 WYNFLKKRIPDIANAGTTHVWLPPP 28
WYN L+++ IA G + +W+P P
Sbjct: 35 WYNILRQQAATIAADGFSAIWMPVP 59
>pdb|1GCY|A Chain A, High Resolution Crystal Structure Of
Maltotetraose-Forming Exo-Amylase
Length = 527
Score = 29.6 bits (65), Expect = 0.46, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 4 WYNFLKKRIPDIANAGTTHVWLPPP 28
WYN L+++ IA G + +W+P P
Sbjct: 35 WYNILRQQAATIAADGFSAIWMPVP 59
>pdb|1QI5|A Chain A, Mutant (D294n) Maltotetraose-Forming Exo-Amylase In
Complex With Maltotetraose
Length = 429
Score = 29.6 bits (65), Expect = 0.46, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 4 WYNFLKKRIPDIANAGTTHVWLPPP 28
WYN L+++ IA G + +W+P P
Sbjct: 35 WYNILRQQAATIAADGFSAIWMPVP 59
>pdb|1JQI|A Chain A, Crystal Structure Of Rat Short Chain Acyl-Coa
Dehydrogenase Complexed With Acetoacetyl-Coa
pdb|1JQI|B Chain B, Crystal Structure Of Rat Short Chain Acyl-Coa
Dehydrogenase Complexed With Acetoacetyl-Coa
Length = 388
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 17 NAGTTHVWLPPPSQHAAPQEKKEKAKNRNAPISNFELGALRIPKSNLL 64
N G + +P P+ +K++K R + +N RIPK NLL
Sbjct: 183 NKGISAFLVPMPTPGLTLGKKEDKLGIRASSTANLIFEDCRIPKENLL 230
>pdb|2A50|B Chain B, Fluorescent Protein Asfp595, Wt, Off-State
pdb|2A50|D Chain D, Fluorescent Protein Asfp595, Wt, Off-State
Length = 168
Score = 27.3 bits (59), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 53 LGALRIPKSNLLSLHLHQQTQKAKSTEKLRMGGSH 87
L AL+ P L+ HLH + K L+M G H
Sbjct: 95 LMALKCPGGRHLTCHLHTTYRSKKPASALKMPGFH 129
>pdb|2A52|B Chain B, Fluorescent Protein Asfp595, S158v, On-State
pdb|2A52|D Chain D, Fluorescent Protein Asfp595, S158v, On-State
Length = 168
Score = 27.3 bits (59), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 53 LGALRIPKSNLLSLHLHQQTQKAKSTEKLRMGGSH 87
L AL+ P L+ HLH + K L+M G H
Sbjct: 95 LMALKCPGGRHLTCHLHTTYRSKKPASALKMPGFH 129
>pdb|2A53|B Chain B, Fluorescent Protein Asfp595, A143s, Off-state
pdb|2A53|D Chain D, Fluorescent Protein Asfp595, A143s, Off-state
pdb|2A54|B Chain B, Fluorescent Protein Asfp595, A143s, On-state, 1min
Irradiation
pdb|2A54|D Chain D, Fluorescent Protein Asfp595, A143s, On-state, 1min
Irradiation
pdb|2A56|B Chain B, Fluorescent Protein Asfp595, A143s, On-State, 5min
Irradiation
pdb|2A56|D Chain D, Fluorescent Protein Asfp595, A143s, On-State, 5min
Irradiation
Length = 168
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 53 LGALRIPKSNLLSLHLHQQTQKAKSTEKLRMGGSH 87
L AL+ P L+ HLH + K L+M G H
Sbjct: 95 LMALKCPGGRHLTCHLHTTYRSKKPASALKMPGFH 129
>pdb|1XQM|A Chain A, Variations On The Gfp Chromophore Scaffold: A Fragmented
5-Membered Heterocycle Revealed In The 2.1a Crystal
Structure Of A Non- Fluorescent Chromoprotein
Length = 230
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 53 LGALRIPKSNLLSLHLHQQTQKAKSTEKLRMGGSH 87
L AL+ P L+ HLH + K L+M G H
Sbjct: 157 LMALKCPGGRHLTCHLHTTYRSKKPASALKMPGFH 191
>pdb|1XMZ|A Chain A, Crystal Structure Of The Dark State Of Kindling
Fluorescent Protein Kfp From Anemonia Sulcata
pdb|1XMZ|B Chain B, Crystal Structure Of The Dark State Of Kindling
Fluorescent Protein Kfp From Anemonia Sulcata
Length = 241
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 53 LGALRIPKSNLLSLHLHQQTQKAKSTEKLRMGGSH 87
L AL+ P L+ HLH + K L+M G H
Sbjct: 168 LMALKCPGGRHLTCHLHTTYRSKKPASALKMPGFH 202
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.309 0.127 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,238,693
Number of Sequences: 62578
Number of extensions: 113471
Number of successful extensions: 198
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 175
Number of HSP's gapped (non-prelim): 23
length of query: 104
length of database: 14,973,337
effective HSP length: 69
effective length of query: 35
effective length of database: 10,655,455
effective search space: 372940925
effective search space used: 372940925
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 45 (21.9 bits)