Query 047360
Match_columns 104
No_of_seqs 128 out of 285
Neff 3.2
Searched_HMMs 46136
Date Fri Mar 29 10:21:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047360.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047360hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00196 alpha-amylase; Provis 99.8 2.4E-21 5.2E-26 160.5 5.5 82 2-87 40-121 (428)
2 PLN02361 alpha-amylase 99.8 3.5E-21 7.6E-26 159.0 5.9 82 2-87 25-106 (401)
3 PLN02784 alpha-amylase 99.8 3.2E-20 7E-25 166.8 5.4 80 2-85 517-596 (894)
4 PRK09441 cytoplasmic alpha-amy 99.8 1.1E-19 2.5E-24 149.3 6.4 83 2-87 18-111 (479)
5 PF00128 Alpha-amylase: Alpha 99.6 3.9E-16 8.5E-21 113.1 2.2 78 5-87 3-82 (316)
6 smart00642 Aamy Alpha-amylase 99.6 1.4E-15 3.1E-20 111.5 4.9 78 3-84 16-97 (166)
7 PRK10933 trehalose-6-phosphate 99.4 5.8E-13 1.3E-17 112.9 5.1 78 5-87 32-110 (551)
8 TIGR02456 treS_nterm trehalose 99.3 2.1E-12 4.6E-17 108.2 5.0 78 5-87 27-105 (539)
9 TIGR02403 trehalose_treC alpha 99.3 3.3E-12 7.2E-17 107.7 4.8 78 5-87 26-104 (543)
10 TIGR02402 trehalose_TreZ malto 99.2 1.1E-11 2.5E-16 105.0 5.3 78 5-87 110-189 (542)
11 COG0366 AmyA Glycosidases [Car 99.2 1.2E-11 2.6E-16 97.5 4.3 75 5-83 28-103 (505)
12 PRK10785 maltodextrin glucosid 99.2 2.3E-11 5E-16 103.8 4.6 78 5-87 178-255 (598)
13 TIGR02100 glgX_debranch glycog 99.2 2.7E-11 5.9E-16 105.9 4.4 75 11-87 189-275 (688)
14 PRK09505 malS alpha-amylase; R 99.1 3.5E-11 7.5E-16 105.7 4.7 75 5-83 229-318 (683)
15 KOG0471 Alpha-amylase [Carbohy 99.1 1.9E-11 4E-16 104.2 2.2 77 3-83 37-114 (545)
16 TIGR02401 trehalose_TreY malto 99.1 6.4E-11 1.4E-15 106.5 5.4 77 5-85 15-93 (825)
17 PRK14511 maltooligosyl trehalo 99.1 6.6E-11 1.4E-15 107.1 5.4 77 5-85 19-97 (879)
18 TIGR02104 pulA_typeI pullulana 99.0 1.7E-10 3.7E-15 98.4 4.2 82 8-89 166-261 (605)
19 TIGR01515 branching_enzym alph 99.0 3.4E-10 7.3E-15 97.0 4.8 75 5-83 155-232 (613)
20 PRK12313 glycogen branching en 99.0 5.6E-10 1.2E-14 95.6 5.3 77 5-85 169-248 (633)
21 PRK03705 glycogen debranching 99.0 5.1E-10 1.1E-14 97.8 4.9 72 11-86 184-271 (658)
22 TIGR02102 pullulan_Gpos pullul 99.0 8E-10 1.7E-14 101.9 5.5 82 4-85 478-583 (1111)
23 PRK05402 glycogen branching en 98.9 1.1E-09 2.3E-14 95.6 5.5 79 5-87 264-345 (726)
24 PRK14507 putative bifunctional 98.8 3.7E-09 8.1E-14 100.8 5.3 75 5-83 757-833 (1693)
25 PRK14510 putative bifunctional 98.8 2.9E-09 6.3E-14 98.4 3.8 74 10-87 191-277 (1221)
26 PRK12568 glycogen branching en 98.8 8.8E-09 1.9E-13 91.8 5.5 80 5-88 268-350 (730)
27 PLN02447 1,4-alpha-glucan-bran 98.7 1.3E-08 2.9E-13 91.0 5.0 72 9-84 254-327 (758)
28 PRK14706 glycogen branching en 98.7 1.2E-08 2.6E-13 88.9 4.5 74 5-82 166-242 (639)
29 PRK14705 glycogen branching en 98.7 1.6E-08 3.5E-13 94.2 4.7 75 5-83 764-841 (1224)
30 PF02324 Glyco_hydro_70: Glyco 98.7 1.1E-08 2.4E-13 92.1 3.3 77 5-81 586-671 (809)
31 PLN02960 alpha-amylase 98.6 3.1E-08 6.7E-13 90.3 4.9 77 5-85 415-494 (897)
32 COG1523 PulA Type II secretory 98.5 6.3E-08 1.4E-12 86.1 4.0 88 7-96 199-304 (697)
33 TIGR02455 TreS_stutzeri trehal 98.3 2.7E-07 6E-12 82.4 3.1 64 13-83 81-156 (688)
34 PLN02877 alpha-amylase/limit d 98.2 1.2E-06 2.7E-11 80.5 4.5 73 11-85 378-494 (970)
35 TIGR02103 pullul_strch alpha-1 98.0 3.6E-06 7.8E-11 76.8 3.5 48 36-84 380-431 (898)
36 TIGR03852 sucrose_gtfA sucrose 97.9 1.4E-05 3.1E-10 68.4 5.0 66 6-82 17-84 (470)
37 PRK13840 sucrose phosphorylase 97.8 1.8E-05 3.9E-10 68.2 4.3 67 5-82 19-89 (495)
38 TIGR01531 glyc_debranch glycog 97.7 4.5E-05 9.8E-10 72.9 4.6 77 6-83 132-211 (1464)
39 COG0296 GlgB 1,4-alpha-glucan 97.6 6.7E-05 1.5E-09 66.6 4.6 87 4-95 163-261 (628)
40 KOG0470 1,4-alpha-glucan branc 97.4 0.00013 2.9E-09 66.2 4.1 85 5-89 253-343 (757)
41 COG3280 TreY Maltooligosyl tre 97.3 0.00019 4.1E-09 65.9 3.5 76 6-85 19-96 (889)
42 PF14701 hDGE_amylase: glucano 94.0 0.081 1.8E-06 45.5 4.4 76 7-83 23-103 (423)
43 TIGR03356 BGL beta-galactosida 90.4 0.29 6.3E-06 40.9 3.2 64 3-77 51-114 (427)
44 PLN03244 alpha-amylase; Provis 86.5 0.22 4.7E-06 46.5 0.1 33 53-85 437-469 (872)
45 PF02638 DUF187: Glycosyl hydr 78.9 2.1 4.6E-05 34.5 3.0 66 6-77 19-90 (311)
46 PF00150 Cellulase: Cellulase 78.1 1.2 2.6E-05 32.6 1.2 62 7-80 22-85 (281)
47 PRK09589 celA 6-phospho-beta-g 71.9 4.6 0.0001 34.6 3.4 67 3-81 64-130 (476)
48 PRK09852 cryptic 6-phospho-bet 71.3 3.8 8.3E-05 35.2 2.8 64 3-76 68-131 (474)
49 PRK09593 arb 6-phospho-beta-gl 70.5 5.3 0.00011 34.3 3.5 63 3-75 70-132 (478)
50 PRK15014 6-phospho-beta-glucos 70.3 4 8.7E-05 35.0 2.7 65 3-77 66-130 (477)
51 PF03537 Glyco_hydro_114: Glyc 69.8 2.7 5.9E-05 27.5 1.3 44 21-75 2-54 (74)
52 PRK13511 6-phospho-beta-galact 68.8 5.5 0.00012 33.9 3.2 63 3-76 51-113 (469)
53 PLN02998 beta-glucosidase 66.6 5.7 0.00012 34.4 2.9 66 3-81 79-144 (497)
54 PLN02849 beta-glucosidase 64.9 6.4 0.00014 34.1 2.9 66 3-81 76-141 (503)
55 PLN02814 beta-glucosidase 64.9 7 0.00015 33.9 3.1 66 3-81 74-139 (504)
56 KOG2212 Alpha-amylase [Carbohy 64.8 12 0.00026 33.1 4.6 70 13-88 48-126 (504)
57 PF14871 GHL6: Hypothetical gl 64.5 13 0.00028 26.8 4.0 59 9-75 3-62 (132)
58 TIGR01233 lacG 6-phospho-beta- 61.1 10 0.00022 32.4 3.4 75 3-90 50-132 (467)
59 TIGR03560 F420_Rv1855c probabl 59.2 10 0.00022 28.8 2.8 24 4-27 11-34 (227)
60 cd06593 GH31_xylosidase_YicI Y 56.4 18 0.0004 28.3 3.9 58 6-76 24-85 (308)
61 PLN02660 pantoate--beta-alanin 54.4 15 0.00031 30.2 3.1 53 7-59 73-140 (284)
62 PF00232 Glyco_hydro_1: Glycos 52.4 6 0.00013 33.1 0.6 63 3-75 55-117 (455)
63 KOG3904 Predicted hydrolase RP 52.0 3.9 8.5E-05 32.8 -0.5 16 42-57 155-171 (209)
64 cd06592 GH31_glucosidase_KIAA1 49.1 30 0.00066 27.4 4.1 55 6-75 30-88 (303)
65 TIGR03555 F420_mer 5,10-methyl 45.7 22 0.00047 28.2 2.8 24 5-28 11-34 (325)
66 TIGR03854 F420_MSMEG_3544 prob 45.1 26 0.00056 27.7 3.2 25 5-29 246-270 (290)
67 cd01094 Alkanesulfonate_monoxy 43.2 27 0.00058 26.4 2.8 23 5-27 27-49 (244)
68 TIGR03565 alk_sulf_monoox alka 42.9 26 0.00056 28.2 2.9 23 5-27 26-48 (346)
69 TIGR03856 F420_MSMEG_2906 prob 42.1 28 0.0006 27.2 2.8 22 5-26 15-36 (249)
70 TIGR03551 F420_cofH 7,8-dideme 40.8 15 0.00033 29.4 1.3 60 9-80 141-202 (343)
71 PRK10426 alpha-glucosidase; Pr 40.4 49 0.0011 29.5 4.5 65 6-75 221-287 (635)
72 PF00296 Bac_luciferase: Lucif 39.8 28 0.00061 26.3 2.5 27 4-30 21-47 (307)
73 PRK06256 biotin synthase; Vali 37.8 26 0.00055 27.7 2.1 60 9-81 152-211 (336)
74 cd00347 Flavin_utilizing_monox 36.6 19 0.0004 21.1 0.9 23 4-26 20-42 (90)
75 cd06599 GH31_glycosidase_Aec37 36.4 79 0.0017 25.2 4.7 59 6-75 29-91 (317)
76 PF13380 CoA_binding_2: CoA bi 35.8 40 0.00086 23.2 2.6 22 7-28 67-88 (116)
77 TIGR00018 panC pantoate--beta- 35.5 30 0.00066 28.3 2.2 52 7-59 74-137 (282)
78 PF12419 DUF3670: SNF2 Helicas 35.4 35 0.00075 24.5 2.3 65 4-69 16-95 (141)
79 TIGR03857 F420_MSMEG_2249 prob 35.2 40 0.00087 27.2 2.9 24 5-28 13-36 (329)
80 PRK00719 alkanesulfonate monoo 34.3 42 0.00091 27.5 2.9 24 4-27 26-49 (378)
81 cd06597 GH31_transferase_CtsY 34.3 1.1E+02 0.0024 24.9 5.3 69 6-75 24-103 (340)
82 TIGR03558 oxido_grp_1 lucifera 34.3 44 0.00094 26.3 2.9 24 4-27 18-41 (323)
83 PF14488 DUF4434: Domain of un 34.2 82 0.0018 23.3 4.2 66 8-80 22-88 (166)
84 cd06604 GH31_glucosidase_II_Ma 32.5 76 0.0017 25.4 4.0 55 6-75 24-82 (339)
85 PRK02271 methylenetetrahydrome 32.2 47 0.001 26.3 2.8 24 5-28 13-36 (325)
86 PRK13477 bifunctional pantoate 30.6 41 0.00089 29.6 2.4 52 7-59 72-135 (512)
87 PF13200 DUF4015: Putative gly 30.4 58 0.0012 27.1 3.1 65 6-78 13-82 (316)
88 TIGR03841 F420_Rv3093c probabl 30.4 55 0.0012 25.7 2.8 22 6-27 10-31 (301)
89 cd01097 Tetrahydromethanopteri 29.1 32 0.0007 24.7 1.3 22 5-26 14-35 (202)
90 cd01096 Alkanal_monooxygenase 28.9 60 0.0013 25.5 2.8 23 5-27 21-43 (315)
91 PF05706 CDKN3: Cyclin-depende 28.9 29 0.00063 26.8 1.1 23 2-24 54-76 (168)
92 PF00981 Rota_NS53: Rotavirus 28.6 42 0.00091 30.0 2.1 26 4-29 10-35 (488)
93 TIGR00433 bioB biotin syntheta 28.3 45 0.00098 25.5 2.0 60 9-81 123-182 (296)
94 PRK11181 23S rRNA (guanosine-2 28.2 1.2E+02 0.0026 23.5 4.4 64 7-75 108-173 (244)
95 COG1834 N-Dimethylarginine dim 28.0 87 0.0019 25.8 3.7 71 10-86 42-122 (267)
96 cd00481 Ribosomal_L19e Ribosom 28.0 38 0.00082 25.8 1.5 22 9-30 5-26 (145)
97 PRK13384 delta-aminolevulinic 27.7 1.1E+02 0.0025 26.0 4.4 61 5-81 60-125 (322)
98 cd00377 ICL_PEPM Members of th 27.6 57 0.0012 25.3 2.5 25 5-29 159-183 (243)
99 cd01418 Ribosomal_L19e_A Ribos 27.6 41 0.00089 25.6 1.7 22 9-30 5-26 (145)
100 cd06598 GH31_transferase_CtsZ 27.4 1.2E+02 0.0026 24.2 4.4 62 6-76 24-89 (317)
101 PF04785 Rhabdo_M2: Rhabdoviru 27.0 23 0.0005 28.0 0.2 9 21-29 29-37 (202)
102 TIGR03842 F420_CPS_4043 F420-d 26.8 67 0.0015 25.5 2.8 23 5-27 12-34 (330)
103 cd07245 Glo_EDI_BRP_like_9 Thi 26.6 1E+02 0.0022 18.4 3.0 21 8-28 75-95 (114)
104 PF09445 Methyltransf_15: RNA 26.5 32 0.00069 25.9 0.9 30 20-52 70-100 (163)
105 PRK07094 biotin synthase; Prov 26.5 56 0.0012 25.6 2.3 22 60-81 168-189 (323)
106 TIGR03854 F420_MSMEG_3544 prob 26.0 71 0.0015 25.2 2.8 24 5-28 12-35 (290)
107 TIGR03621 F420_MSMEG_2516 prob 26.0 72 0.0016 25.4 2.8 23 5-27 13-35 (295)
108 PF02569 Pantoate_ligase: Pant 25.1 47 0.001 27.3 1.7 32 6-38 73-104 (280)
109 PRK08570 rpl19e 50S ribosomal 24.7 55 0.0012 25.0 1.9 23 8-30 7-29 (150)
110 cd06602 GH31_MGAM_SI_GAA This 24.1 1.6E+02 0.0034 23.9 4.5 56 6-76 24-85 (339)
111 PRK01060 endonuclease IV; Prov 23.9 60 0.0013 24.4 2.0 24 5-28 11-36 (281)
112 COG2147 RPL19A Ribosomal prote 23.8 65 0.0014 24.8 2.1 22 7-28 6-27 (150)
113 PF01280 Ribosomal_L19e: Ribos 23.7 54 0.0012 24.9 1.7 22 8-29 6-27 (148)
114 TIGR00542 hxl6Piso_put hexulos 23.6 89 0.0019 23.7 2.8 20 8-27 18-37 (279)
115 cd04823 ALAD_PBGS_aspartate_ri 23.6 1.3E+02 0.0028 25.6 4.0 61 5-81 53-120 (320)
116 cd06591 GH31_xylosidase_XylS X 23.5 1.3E+02 0.0029 24.0 4.0 57 6-75 24-84 (319)
117 cd07253 Glo_EDI_BRP_like_2 Thi 23.2 1.1E+02 0.0023 18.9 2.8 22 8-29 79-100 (125)
118 cd01417 Ribosomal_L19e_E Ribos 22.9 52 0.0011 25.5 1.5 22 9-30 5-26 (164)
119 PF05762 VWA_CoxE: VWA domain 22.9 1.2E+02 0.0025 23.0 3.4 35 4-39 164-198 (222)
120 TIGR03554 F420_G6P_DH glucose- 22.8 87 0.0019 25.0 2.8 22 6-27 16-37 (331)
121 PF11871 DUF3391: Domain of un 22.5 77 0.0017 21.2 2.1 79 9-87 38-121 (128)
122 TIGR03571 lucif_BA3436 lucifer 22.5 91 0.002 24.8 2.8 23 5-27 24-46 (298)
123 cd06589 GH31 The enzymes of gl 22.4 2E+02 0.0043 22.2 4.6 59 6-75 24-84 (265)
124 PF00490 ALAD: Delta-aminolevu 22.2 83 0.0018 26.7 2.7 60 6-81 57-123 (324)
125 smart00733 Mterf Mitochondrial 22.2 87 0.0019 15.1 1.8 16 6-21 16-31 (31)
126 TIGR03858 LLM_2I7G probable ox 22.1 93 0.002 24.8 2.8 22 6-27 26-47 (337)
127 PTZ00097 60S ribosomal protein 22.1 55 0.0012 25.6 1.5 21 10-30 7-27 (175)
128 PRK02271 methylenetetrahydrome 22.1 97 0.0021 24.5 2.9 22 6-27 286-308 (325)
129 TIGR02761 TraE_TIGR type IV co 21.9 87 0.0019 23.4 2.5 21 6-26 110-130 (181)
130 TIGR03559 F420_Rv3520c probabl 21.7 97 0.0021 24.8 2.8 23 6-28 13-35 (325)
131 TIGR03557 F420_G6P_family F420 21.5 86 0.0019 24.9 2.5 23 6-28 13-35 (316)
132 PF01321 Creatinase_N: Creatin 21.4 72 0.0016 20.6 1.7 23 7-29 1-23 (132)
133 cd02072 Glm_B12_BD B12 binding 20.9 1.1E+02 0.0024 22.2 2.8 17 10-26 99-115 (128)
134 PRK00380 panC pantoate--beta-a 20.3 84 0.0018 25.5 2.3 31 7-38 74-104 (281)
135 TIGR01370 cysRS possible cyste 20.2 1E+02 0.0022 25.6 2.7 24 3-26 144-167 (315)
No 1
>PLN00196 alpha-amylase; Provisional
Probab=99.84 E-value=2.4e-21 Score=160.52 Aligned_cols=82 Identities=35% Similarity=0.532 Sum_probs=74.2
Q ss_pred CchhHHHHhhhhHHHHcCCCeEEcCCCCCCCCCCCCCccccccCCCCCccccCccccchhhHHHHHHhcccchhhhhhhh
Q 047360 2 GGWYNFLKKRIPDIANAGTTHVWLPPPSQHAAPQEKKEKAKNRNAPISNFELGALRIPKSNLLSLHLHQQTQKAKSTEKL 81 (104)
Q Consensus 2 g~wWk~Lk~~apeLa~aGITaVWLPPpsKg~s~~GY~pyDLyd~~~lgefdkgsvrt~k~~i~~l~~~~~~~~~d~v~~h 81 (104)
|.||+.|.++++.|+++|||+||||||+++.+.+||+|+|+|+ +++.-.||-..-|+-|+++|++||.|++|+|.||
T Consensus 40 gg~~~~i~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~---ld~~~fGt~~elk~Lv~~aH~~GIkVilDvV~NH 116 (428)
T PLN00196 40 GGWYNFLMGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYD---LDASKYGNEAQLKSLIEAFHGKGVQVIADIVINH 116 (428)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCC---CCcccCCCHHHHHHHHHHHHHCCCEEEEEECccC
Confidence 6799999999999999999999999999999999999999999 5544467777778889999999999999999999
Q ss_pred hcCCCC
Q 047360 82 RMGGSH 87 (104)
Q Consensus 82 ~~g~d~ 87 (104)
++ ++|
T Consensus 117 ~~-~~~ 121 (428)
T PLN00196 117 RT-AEH 121 (428)
T ss_pred cc-ccc
Confidence 97 555
No 2
>PLN02361 alpha-amylase
Probab=99.83 E-value=3.5e-21 Score=159.03 Aligned_cols=82 Identities=29% Similarity=0.471 Sum_probs=74.0
Q ss_pred CchhHHHHhhhhHHHHcCCCeEEcCCCCCCCCCCCCCccccccCCCCCccccCccccchhhHHHHHHhcccchhhhhhhh
Q 047360 2 GGWYNFLKKRIPDIANAGTTHVWLPPPSQHAAPQEKKEKAKNRNAPISNFELGALRIPKSNLLSLHLHQQTQKAKSTEKL 81 (104)
Q Consensus 2 g~wWk~Lk~~apeLa~aGITaVWLPPpsKg~s~~GY~pyDLyd~~~lgefdkgsvrt~k~~i~~l~~~~~~~~~d~v~~h 81 (104)
++||+.|+++++.|+++|||+||||||+++.+++||.|+|+|++ +-..||...-|.-|++||++||.|++|+|.||
T Consensus 25 ~~~w~~i~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~----~~~~Gt~~el~~li~~~h~~gi~vi~D~V~NH 100 (401)
T PLN02361 25 HDWWRNLEGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSL----NSAYGSEHLLKSLLRKMKQYNVRAMADIVINH 100 (401)
T ss_pred cHHHHHHHHHHHHHHHcCCCEEEeCCCCcCCCCCCCCccccccc----CcccCCHHHHHHHHHHHHHcCCEEEEEEcccc
Confidence 57999999999999999999999999999999999999999995 33378877778889999999999999999999
Q ss_pred hcCCCC
Q 047360 82 RMGGSH 87 (104)
Q Consensus 82 ~~g~d~ 87 (104)
++|...
T Consensus 101 ~~g~~~ 106 (401)
T PLN02361 101 RVGTTQ 106 (401)
T ss_pred ccCCCC
Confidence 987543
No 3
>PLN02784 alpha-amylase
Probab=99.80 E-value=3.2e-20 Score=166.79 Aligned_cols=80 Identities=24% Similarity=0.387 Sum_probs=73.8
Q ss_pred CchhHHHHhhhhHHHHcCCCeEEcCCCCCCCCCCCCCccccccCCCCCccccCccccchhhHHHHHHhcccchhhhhhhh
Q 047360 2 GGWYNFLKKRIPDIANAGTTHVWLPPPSQHAAPQEKKEKAKNRNAPISNFELGALRIPKSNLLSLHLHQQTQKAKSTEKL 81 (104)
Q Consensus 2 g~wWk~Lk~~apeLa~aGITaVWLPPpsKg~s~~GY~pyDLyd~~~lgefdkgsvrt~k~~i~~l~~~~~~~~~d~v~~h 81 (104)
+.||+.|.++++.|+++|||+||||||+++.+++||+|+|+|++ + ..+||....|.-|++||++||.|++|+|+||
T Consensus 517 g~w~~~I~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~l---d-s~yGT~~ELk~LI~a~H~~GIkVIlDiViNH 592 (894)
T PLN02784 517 GRWYMELGEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNL---N-SRYGTIDELKDLVKSFHEVGIKVLGDAVLNH 592 (894)
T ss_pred CchHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCCcCccccccc---C-cCcCCHHHHHHHHHHHHHCCCEEEEEECccc
Confidence 57999999999999999999999999999999999999999994 2 4478877778889999999999999999999
Q ss_pred hcCC
Q 047360 82 RMGG 85 (104)
Q Consensus 82 ~~g~ 85 (104)
++|+
T Consensus 593 ~ag~ 596 (894)
T PLN02784 593 RCAH 596 (894)
T ss_pred cccc
Confidence 9875
No 4
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=99.79 E-value=1.1e-19 Score=149.29 Aligned_cols=83 Identities=25% Similarity=0.396 Sum_probs=75.3
Q ss_pred CchhHHHHhhhhHHHHcCCCeEEcCCCCCCCC---CCCCCccccccCCCCCccc-cCccccc-------hhhHHHHHHhc
Q 047360 2 GGWYNFLKKRIPDIANAGTTHVWLPPPSQHAA---PQEKKEKAKNRNAPISNFE-LGALRIP-------KSNLLSLHLHQ 70 (104)
Q Consensus 2 g~wWk~Lk~~apeLa~aGITaVWLPPpsKg~s---~~GY~pyDLyd~~~lgefd-kgsvrt~-------k~~i~~l~~~~ 70 (104)
+.||+.|.++++.|+++|||+|||+|++++.+ ..||.|+|+|+ +++|+ +|+|..+ |.-|.+||++|
T Consensus 18 ~~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~---~~~~~~~~~id~~fGt~~dl~~Li~~~H~~G 94 (479)
T PRK09441 18 GKLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFD---LGEFDQKGTVRTKYGTKEELLNAIDALHENG 94 (479)
T ss_pred ccHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccc---cccccccCCcCcCcCCHHHHHHHHHHHHHCC
Confidence 67999999999999999999999999999864 58999999999 89998 8888877 44499999999
Q ss_pred ccchhhhhhhhhcCCCC
Q 047360 71 QTQKAKSTEKLRMGGSH 87 (104)
Q Consensus 71 ~~~~~d~v~~h~~g~d~ 87 (104)
|.|++|+|.||..++++
T Consensus 95 i~vi~D~V~NH~~~~~~ 111 (479)
T PRK09441 95 IKVYADVVLNHKAGADE 111 (479)
T ss_pred CEEEEEECcccccCCCc
Confidence 99999999999998765
No 5
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=99.59 E-value=3.9e-16 Score=113.15 Aligned_cols=78 Identities=9% Similarity=0.112 Sum_probs=65.0
Q ss_pred hHHHHhhhhHHHHcCCCeEEcCCCCCCC-CCCCCCcccccc-CCCCCccccCccccchhhHHHHHHhcccchhhhhhhhh
Q 047360 5 YNFLKKRIPDIANAGTTHVWLPPPSQHA-APQEKKEKAKNR-NAPISNFELGALRIPKSNLLSLHLHQQTQKAKSTEKLR 82 (104)
Q Consensus 5 Wk~Lk~~apeLa~aGITaVWLPPpsKg~-s~~GY~pyDLyd-~~~lgefdkgsvrt~k~~i~~l~~~~~~~~~d~v~~h~ 82 (104)
|+-|.++++.|+++|||+|||+|+.++. +..||.|.|+|. ..++ ||...-|+=|+++|++||.|++|+|.||.
T Consensus 3 ~~gi~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~-----Gt~~d~~~Lv~~~h~~gi~VilD~V~NH~ 77 (316)
T PF00128_consen 3 FRGIIDKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRF-----GTMEDFKELVDAAHKRGIKVILDVVPNHT 77 (316)
T ss_dssp HHHHHHTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTT-----BHHHHHHHHHHHHHHTTCEEEEEEETSEE
T ss_pred HHHHHHhhHHHHHcCCCceecccccccccccccccceeeecccccc-----chhhhhhhhhhccccccceEEEeeecccc
Confidence 6778999999999999999999999986 788999999998 4444 44433355599999999999999999997
Q ss_pred cCCCC
Q 047360 83 MGGSH 87 (104)
Q Consensus 83 ~g~d~ 87 (104)
.....
T Consensus 78 ~~~~~ 82 (316)
T PF00128_consen 78 SDDHP 82 (316)
T ss_dssp ETTSH
T ss_pred ccccc
Confidence 66543
No 6
>smart00642 Aamy Alpha-amylase domain.
Probab=99.59 E-value=1.4e-15 Score=111.48 Aligned_cols=78 Identities=13% Similarity=0.139 Sum_probs=68.1
Q ss_pred chhHHHHhhhhHHHHcCCCeEEcCCCCCCC----CCCCCCccccccCCCCCccccCccccchhhHHHHHHhcccchhhhh
Q 047360 3 GWYNFLKKRIPDIANAGTTHVWLPPPSQHA----APQEKKEKAKNRNAPISNFELGALRIPKSNLLSLHLHQQTQKAKST 78 (104)
Q Consensus 3 ~wWk~Lk~~apeLa~aGITaVWLPPpsKg~----s~~GY~pyDLyd~~~lgefdkgsvrt~k~~i~~l~~~~~~~~~d~v 78 (104)
.-|+.+.++++.|+++|||+|||+|+.++. +..||.|.|+|...+ .+|+...-|.=|+++|++||.|++|+|
T Consensus 16 G~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~----~~Gt~~d~~~lv~~~h~~Gi~vilD~V 91 (166)
T smart00642 16 GDLQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDP----RFGTMEDFKELVDAAHARGIKVILDVV 91 (166)
T ss_pred cCHHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCc----ccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 348899999999999999999999999987 578999999998431 467776667779999999999999999
Q ss_pred hhhhcC
Q 047360 79 EKLRMG 84 (104)
Q Consensus 79 ~~h~~g 84 (104)
.||..+
T Consensus 92 ~NH~~~ 97 (166)
T smart00642 92 INHTSD 97 (166)
T ss_pred CCCCCC
Confidence 999876
No 7
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=99.36 E-value=5.8e-13 Score=112.94 Aligned_cols=78 Identities=10% Similarity=0.043 Sum_probs=66.8
Q ss_pred hHHHHhhhhHHHHcCCCeEEcCCCCCCCC-CCCCCccccccCCCCCccccCccccchhhHHHHHHhcccchhhhhhhhhc
Q 047360 5 YNFLKKRIPDIANAGTTHVWLPPPSQHAA-PQEKKEKAKNRNAPISNFELGALRIPKSNLLSLHLHQQTQKAKSTEKLRM 83 (104)
Q Consensus 5 Wk~Lk~~apeLa~aGITaVWLPPpsKg~s-~~GY~pyDLyd~~~lgefdkgsvrt~k~~i~~l~~~~~~~~~d~v~~h~~ 83 (104)
++-+.++++.|+++|||+|||+|++.+.. +.||.+.|+|.. +-.+||...-|.=|+++|++||.|++|+|+||..
T Consensus 32 l~gi~~~ldyl~~lGv~~i~l~P~~~~~~~~~gY~~~d~~~i----d~~~Gt~~d~~~lv~~~h~~gi~vilD~V~NH~s 107 (551)
T PRK10933 32 LRGVTQRLDYLQKLGVDAIWLTPFYVSPQVDNGYDVANYTAI----DPTYGTLDDFDELVAQAKSRGIRIILDMVFNHTS 107 (551)
T ss_pred HHHHHHhhHHHHhCCCCEEEECCCCCCCCCCCCCCcccCCCc----CcccCCHHHHHHHHHHHHHCCCEEEEEECCCCcc
Confidence 45677899999999999999999998753 579999999984 4458887766777999999999999999999985
Q ss_pred CCCC
Q 047360 84 GGSH 87 (104)
Q Consensus 84 g~d~ 87 (104)
. +|
T Consensus 108 ~-~~ 110 (551)
T PRK10933 108 T-QH 110 (551)
T ss_pred C-ch
Confidence 4 44
No 8
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=99.30 E-value=2.1e-12 Score=108.24 Aligned_cols=78 Identities=14% Similarity=0.077 Sum_probs=66.2
Q ss_pred hHHHHhhhhHHHHcCCCeEEcCCCCCCCC-CCCCCccccccCCCCCccccCccccchhhHHHHHHhcccchhhhhhhhhc
Q 047360 5 YNFLKKRIPDIANAGTTHVWLPPPSQHAA-PQEKKEKAKNRNAPISNFELGALRIPKSNLLSLHLHQQTQKAKSTEKLRM 83 (104)
Q Consensus 5 Wk~Lk~~apeLa~aGITaVWLPPpsKg~s-~~GY~pyDLyd~~~lgefdkgsvrt~k~~i~~l~~~~~~~~~d~v~~h~~ 83 (104)
.+-|.++++.|+++|||+|||+|+.++.+ +.||.+.|+|.. +-.+|+...-|.=|+++|++||.|++|+|.||.
T Consensus 27 l~gi~~~Ldyl~~LGv~~i~L~Pi~~~~~~~~gY~~~dy~~v----d~~~Gt~~df~~Lv~~ah~~Gi~vilD~V~NH~- 101 (539)
T TIGR02456 27 FPGLTSKLDYLKWLGVDALWLLPFFQSPLRDDGYDVSDYRAI----LPEFGTIDDFKDFVDEAHARGMRVIIDLVLNHT- 101 (539)
T ss_pred HHHHHHhHHHHHHCCCCEEEECCCcCCCCCCCCCCccccccc----ChhhCCHHHHHHHHHHHHHCCCEEEEEeccCcC-
Confidence 45677899999999999999999999864 789999999984 223687766677799999999999999999998
Q ss_pred CCCC
Q 047360 84 GGSH 87 (104)
Q Consensus 84 g~d~ 87 (104)
+.+|
T Consensus 102 s~~~ 105 (539)
T TIGR02456 102 SDQH 105 (539)
T ss_pred CCCC
Confidence 4444
No 9
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=99.28 E-value=3.3e-12 Score=107.72 Aligned_cols=78 Identities=9% Similarity=0.019 Sum_probs=66.1
Q ss_pred hHHHHhhhhHHHHcCCCeEEcCCCCCCCC-CCCCCccccccCCCCCccccCccccchhhHHHHHHhcccchhhhhhhhhc
Q 047360 5 YNFLKKRIPDIANAGTTHVWLPPPSQHAA-PQEKKEKAKNRNAPISNFELGALRIPKSNLLSLHLHQQTQKAKSTEKLRM 83 (104)
Q Consensus 5 Wk~Lk~~apeLa~aGITaVWLPPpsKg~s-~~GY~pyDLyd~~~lgefdkgsvrt~k~~i~~l~~~~~~~~~d~v~~h~~ 83 (104)
++-+.++++.|+++|||+|||+|++++.+ ..||.+.|+|.. +-..|+...-|.-|+++|++||.|++|+|.||.+
T Consensus 26 ~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~i----d~~~Gt~~~~~~lv~~ah~~gi~vilD~v~NH~~ 101 (543)
T TIGR02403 26 LRGIIEKLDYLKKLGVDYIWLNPFYVSPQKDNGYDVSDYYAI----NPLFGTMADFEELVSEAKKRNIKIMLDMVFNHTS 101 (543)
T ss_pred HHHHHHhHHHHHHcCCCEEEECCcccCCCCCCCCCccccCcc----CcccCCHHHHHHHHHHHHHCCCEEEEEECccccc
Confidence 45677899999999999999999999863 469999999973 1227887777888999999999999999999984
Q ss_pred CCCC
Q 047360 84 GGSH 87 (104)
Q Consensus 84 g~d~ 87 (104)
.+|
T Consensus 102 -~~~ 104 (543)
T TIGR02403 102 -TEH 104 (543)
T ss_pred -cch
Confidence 455
No 10
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=99.22 E-value=1.1e-11 Score=104.98 Aligned_cols=78 Identities=14% Similarity=0.048 Sum_probs=65.5
Q ss_pred hHHHHhhhhHHHHcCCCeEEcCCCCCCC--CCCCCCccccccCCCCCccccCccccchhhHHHHHHhcccchhhhhhhhh
Q 047360 5 YNFLKKRIPDIANAGTTHVWLPPPSQHA--APQEKKEKAKNRNAPISNFELGALRIPKSNLLSLHLHQQTQKAKSTEKLR 82 (104)
Q Consensus 5 Wk~Lk~~apeLa~aGITaVWLPPpsKg~--s~~GY~pyDLyd~~~lgefdkgsvrt~k~~i~~l~~~~~~~~~d~v~~h~ 82 (104)
|+-+.++++.|+++|||+|||.|.+... ..-||++.|+|.. +-.+|+...-|+=|+++|++||.|++|+|.||
T Consensus 110 ~~gi~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~----~~~~G~~~e~k~lV~~aH~~Gi~VilD~V~NH- 184 (542)
T TIGR02402 110 FDAAIEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAP----HNAYGGPDDLKALVDAAHGLGLGVILDVVYNH- 184 (542)
T ss_pred HHHHHHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCcccc----ccccCCHHHHHHHHHHHHHCCCEEEEEEccCC-
Confidence 5778889999999999999999997754 4569999999984 33478877668889999999999999999999
Q ss_pred cCCCC
Q 047360 83 MGGSH 87 (104)
Q Consensus 83 ~g~d~ 87 (104)
+|-++
T Consensus 185 ~~~~~ 189 (542)
T TIGR02402 185 FGPEG 189 (542)
T ss_pred CCCcc
Confidence 45443
No 11
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=99.21 E-value=1.2e-11 Score=97.52 Aligned_cols=75 Identities=12% Similarity=0.118 Sum_probs=67.0
Q ss_pred hHHHHhhhhHHHHcCCCeEEcCCCCCC-CCCCCCCccccccCCCCCccccCccccchhhHHHHHHhcccchhhhhhhhhc
Q 047360 5 YNFLKKRIPDIANAGTTHVWLPPPSQH-AAPQEKKEKAKNRNAPISNFELGALRIPKSNLLSLHLHQQTQKAKSTEKLRM 83 (104)
Q Consensus 5 Wk~Lk~~apeLa~aGITaVWLPPpsKg-~s~~GY~pyDLyd~~~lgefdkgsvrt~k~~i~~l~~~~~~~~~d~v~~h~~ 83 (104)
|+=+.++++.|+.+||++|||.|..++ .++.||++.|++...+ ..|++...+.-|.++|+.||.|..|+|+||..
T Consensus 28 l~Gi~~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~----~~Gt~~d~~~li~~~H~~gi~vi~D~V~NH~s 103 (505)
T COG0366 28 LKGITEKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDP----HFGTEEDFKELVEEAHKRGIKVILDLVFNHTS 103 (505)
T ss_pred HHhHHHhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCc----ccCCHHHHHHHHHHHHHCCCEEEEEeccCcCC
Confidence 445569999999999999999999999 7899999999999432 68888888888999999999999999999953
No 12
>PRK10785 maltodextrin glucosidase; Provisional
Probab=99.17 E-value=2.3e-11 Score=103.83 Aligned_cols=78 Identities=13% Similarity=0.121 Sum_probs=68.1
Q ss_pred hHHHHhhhhHHHHcCCCeEEcCCCCCCCCCCCCCccccccCCCCCccccCccccchhhHHHHHHhcccchhhhhhhhhcC
Q 047360 5 YNFLKKRIPDIANAGTTHVWLPPPSQHAAPQEKKEKAKNRNAPISNFELGALRIPKSNLLSLHLHQQTQKAKSTEKLRMG 84 (104)
Q Consensus 5 Wk~Lk~~apeLa~aGITaVWLPPpsKg~s~~GY~pyDLyd~~~lgefdkgsvrt~k~~i~~l~~~~~~~~~d~v~~h~~g 84 (104)
++-+.++++.|+++|||+|||.|..++.+..||++.|+|.. +-.+|+...-|.=|+++|++||.|++|+|.||- |
T Consensus 178 l~GI~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~i----Dp~~Gt~~df~~Lv~~aH~rGikVilD~V~NH~-~ 252 (598)
T PRK10785 178 LDGISEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHV----DPQLGGDAALLRLRHATQQRGMRLVLDGVFNHT-G 252 (598)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCcccCCCCCCcCccccccc----CcccCCHHHHHHHHHHHHHCCCEEEEEECCCcC-C
Confidence 46788999999999999999999999988899999999984 233788777788899999999999999999996 4
Q ss_pred CCC
Q 047360 85 GSH 87 (104)
Q Consensus 85 ~d~ 87 (104)
.+|
T Consensus 253 ~~~ 255 (598)
T PRK10785 253 DSH 255 (598)
T ss_pred CCC
Confidence 455
No 13
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=99.15 E-value=2.7e-11 Score=105.89 Aligned_cols=75 Identities=15% Similarity=-0.012 Sum_probs=60.7
Q ss_pred hhhHHHHcCCCeEEcCCCCCCCCC-----------CCCCccccccC-CCCCccccCccccchhhHHHHHHhcccchhhhh
Q 047360 11 RIPDIANAGTTHVWLPPPSQHAAP-----------QEKKEKAKNRN-APISNFELGALRIPKSNLLSLHLHQQTQKAKST 78 (104)
Q Consensus 11 ~apeLa~aGITaVWLPPpsKg~s~-----------~GY~pyDLyd~-~~lgefdkgsvrt~k~~i~~l~~~~~~~~~d~v 78 (104)
.++.|+++|||+|||.|+....+. -||+|.|+|.. .++|. .|++..-|+-|++||++||.|++|+|
T Consensus 189 ~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~--~g~~~efk~LV~~~H~~GI~VIlDvV 266 (688)
T TIGR02100 189 MIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLA--SGQVAEFKTMVRALHDAGIEVILDVV 266 (688)
T ss_pred hhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhcC--CCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 589999999999999999987532 49999999983 22221 26666668889999999999999999
Q ss_pred hhhhcCCCC
Q 047360 79 EKLRMGGSH 87 (104)
Q Consensus 79 ~~h~~g~d~ 87 (104)
.||...+..
T Consensus 267 ~NHt~~~~~ 275 (688)
T TIGR02100 267 YNHTAEGNE 275 (688)
T ss_pred cCCccCcCC
Confidence 999876543
No 14
>PRK09505 malS alpha-amylase; Reviewed
Probab=99.14 E-value=3.5e-11 Score=105.70 Aligned_cols=75 Identities=9% Similarity=0.070 Sum_probs=62.7
Q ss_pred hHHHHhhhhHHHHcCCCeEEcCCCCCCC---------------CCCCCCccccccCCCCCccccCccccchhhHHHHHHh
Q 047360 5 YNFLKKRIPDIANAGTTHVWLPPPSQHA---------------APQEKKEKAKNRNAPISNFELGALRIPKSNLLSLHLH 69 (104)
Q Consensus 5 Wk~Lk~~apeLa~aGITaVWLPPpsKg~---------------s~~GY~pyDLyd~~~lgefdkgsvrt~k~~i~~l~~~ 69 (104)
|+-|.++++.|+++|||+|||+|+.++. +..||.+.|++.. +-..|+...-|.-|.++|++
T Consensus 229 l~Gi~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~i----d~~~Gt~~dfk~Lv~~aH~~ 304 (683)
T PRK09505 229 LRGLTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKL----DANMGTEADLRTLVDEAHQR 304 (683)
T ss_pred HHHHHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccC----CCCCCCHHHHHHHHHHHHHC
Confidence 6778999999999999999999998752 3458888887763 22378876667779999999
Q ss_pred cccchhhhhhhhhc
Q 047360 70 QQTQKAKSTEKLRM 83 (104)
Q Consensus 70 ~~~~~~d~v~~h~~ 83 (104)
||.|++|+|.||..
T Consensus 305 Gi~VilD~V~NH~~ 318 (683)
T PRK09505 305 GIRILFDVVMNHTG 318 (683)
T ss_pred CCEEEEEECcCCCc
Confidence 99999999999965
No 15
>KOG0471 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=99.13 E-value=1.9e-11 Score=104.19 Aligned_cols=77 Identities=18% Similarity=0.183 Sum_probs=68.6
Q ss_pred chhHHHHhhhhHHHHcCCCeEEcCCCCCCCCC-CCCCccccccCCCCCccccCccccchhhHHHHHHhcccchhhhhhhh
Q 047360 3 GWYNFLKKRIPDIANAGTTHVWLPPPSQHAAP-QEKKEKAKNRNAPISNFELGALRIPKSNLLSLHLHQQTQKAKSTEKL 81 (104)
Q Consensus 3 ~wWk~Lk~~apeLa~aGITaVWLPPpsKg~s~-~GY~pyDLyd~~~lgefdkgsvrt~k~~i~~l~~~~~~~~~d~v~~h 81 (104)
.+|+-+..++..|+++|||+|||||++|+..+ .||.+.|+|.+. =-.||.+.-++=|.++|+-||-+.+|+|.||
T Consensus 37 G~~~GI~~kldyi~~lG~taiWisP~~~s~~~~~GY~~~d~~~l~----p~fGt~edf~~Li~~~h~~gi~ii~D~viNh 112 (545)
T KOG0471|consen 37 GDLKGITSKLDYIKELGFTAIWLSPFTKSSKPDFGYDASDLEQLR----PRFGTEEDFKELILAMHKLGIKIIADLVINH 112 (545)
T ss_pred cccccchhhhhHHHhcCCceEEeCCCcCCCHHHhccCccchhhhc----ccccHHHHHHHHHHHHhhcceEEEEeecccc
Confidence 36999999999999999999999999999755 899999999952 2267777778889999999999999999999
Q ss_pred hc
Q 047360 82 RM 83 (104)
Q Consensus 82 ~~ 83 (104)
+.
T Consensus 113 ~~ 114 (545)
T KOG0471|consen 113 RS 114 (545)
T ss_pred CC
Confidence 94
No 16
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=99.12 E-value=6.4e-11 Score=106.54 Aligned_cols=77 Identities=12% Similarity=0.058 Sum_probs=66.3
Q ss_pred hHHHHhhhhHHHHcCCCeEEcCCCCCCC--CCCCCCccccccCCCCCccccCccccchhhHHHHHHhcccchhhhhhhhh
Q 047360 5 YNFLKKRIPDIANAGTTHVWLPPPSQHA--APQEKKEKAKNRNAPISNFELGALRIPKSNLLSLHLHQQTQKAKSTEKLR 82 (104)
Q Consensus 5 Wk~Lk~~apeLa~aGITaVWLPPpsKg~--s~~GY~pyDLyd~~~lgefdkgsvrt~k~~i~~l~~~~~~~~~d~v~~h~ 82 (104)
++.+.++++.|+++|||+|||.|+.++. +..||++.|++.. +-++|+...-+.=+++||++||.|++|+|.||.
T Consensus 15 f~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~i----dp~lGt~edf~~Lv~aah~~Gm~vIlDiVpNH~ 90 (825)
T TIGR02401 15 FDDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEI----NPELGGEEGLRRLSEAARARGLGLIVDIVPNHM 90 (825)
T ss_pred HHHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCc----CCCCCCHHHHHHHHHHHHHCCCEEEEEeccccc
Confidence 5678999999999999999999999974 6789999999974 445777555566699999999999999999998
Q ss_pred cCC
Q 047360 83 MGG 85 (104)
Q Consensus 83 ~g~ 85 (104)
.-.
T Consensus 91 a~~ 93 (825)
T TIGR02401 91 AVH 93 (825)
T ss_pred ccc
Confidence 754
No 17
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=99.12 E-value=6.6e-11 Score=107.07 Aligned_cols=77 Identities=18% Similarity=0.177 Sum_probs=65.8
Q ss_pred hHHHHhhhhHHHHcCCCeEEcCCCCCCC--CCCCCCccccccCCCCCccccCccccchhhHHHHHHhcccchhhhhhhhh
Q 047360 5 YNFLKKRIPDIANAGTTHVWLPPPSQHA--APQEKKEKAKNRNAPISNFELGALRIPKSNLLSLHLHQQTQKAKSTEKLR 82 (104)
Q Consensus 5 Wk~Lk~~apeLa~aGITaVWLPPpsKg~--s~~GY~pyDLyd~~~lgefdkgsvrt~k~~i~~l~~~~~~~~~d~v~~h~ 82 (104)
++.+.++++.|+++|||+|||+|..++. +..||++.|++.. +-++|+...-+.-|+++|++||.|++|+|.||.
T Consensus 19 f~~~~~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~i----dp~lGt~e~f~~Lv~aah~~Gi~VIlDiV~NH~ 94 (879)
T PRK14511 19 FDDAAELVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRI----NPELGGEEGLRRLAAALRAHGMGLILDIVPNHM 94 (879)
T ss_pred HHHHHHHhHHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCc----CCCCCCHHHHHHHHHHHHHCCCEEEEEeccccc
Confidence 5778999999999999999999999974 6789999999874 444677655566699999999999999999997
Q ss_pred cCC
Q 047360 83 MGG 85 (104)
Q Consensus 83 ~g~ 85 (104)
...
T Consensus 95 ~~~ 97 (879)
T PRK14511 95 AVG 97 (879)
T ss_pred cCc
Confidence 643
No 18
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=99.04 E-value=1.7e-10 Score=98.35 Aligned_cols=82 Identities=20% Similarity=0.070 Sum_probs=62.2
Q ss_pred HHhhhhHHHHcCCCeEEcCCCCCCCC----------CCCCCccccccC-CCCC-ccccCc--cccchhhHHHHHHhcccc
Q 047360 8 LKKRIPDIANAGTTHVWLPPPSQHAA----------PQEKKEKAKNRN-APIS-NFELGA--LRIPKSNLLSLHLHQQTQ 73 (104)
Q Consensus 8 Lk~~apeLa~aGITaVWLPPpsKg~s----------~~GY~pyDLyd~-~~lg-efdkgs--vrt~k~~i~~l~~~~~~~ 73 (104)
+.++++.|+++|||+|||.|.....+ .-||.|.|+|.. .++| +-..|+ +..-|.=|++||++||.|
T Consensus 166 ~~~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~y~~~p~~~~~~~~efk~lV~~~H~~Gi~V 245 (605)
T TIGR02104 166 VSTGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPEGSYSTNPYDPATRIRELKQMIQALHENGIRV 245 (605)
T ss_pred chhHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcChhhhcCCCccchHHHHHHHHHHHHHHCCCEE
Confidence 44679999999999999999987642 359999999973 2233 222333 233366699999999999
Q ss_pred hhhhhhhhhcCCCCCC
Q 047360 74 KAKSTEKLRMGGSHSR 89 (104)
Q Consensus 74 ~~d~v~~h~~g~d~~~ 89 (104)
++|+|.||-.+++++.
T Consensus 246 ilDvV~NH~~~~~~~~ 261 (605)
T TIGR02104 246 IMDVVYNHTYSREESP 261 (605)
T ss_pred EEEEEcCCccCCCCCc
Confidence 9999999998766653
No 19
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=99.01 E-value=3.4e-10 Score=97.03 Aligned_cols=75 Identities=15% Similarity=0.045 Sum_probs=62.7
Q ss_pred hHHHHhhh-hHHHHcCCCeEEcCCCCCCC--CCCCCCccccccCCCCCccccCccccchhhHHHHHHhcccchhhhhhhh
Q 047360 5 YNFLKKRI-PDIANAGTTHVWLPPPSQHA--APQEKKEKAKNRNAPISNFELGALRIPKSNLLSLHLHQQTQKAKSTEKL 81 (104)
Q Consensus 5 Wk~Lk~~a-peLa~aGITaVWLPPpsKg~--s~~GY~pyDLyd~~~lgefdkgsvrt~k~~i~~l~~~~~~~~~d~v~~h 81 (104)
|+-+.+++ +.|+++|||+|||-|..... ..-||.+.|+|.. +-.+|+...-|.=|++||++||.|++|+|.||
T Consensus 155 ~~~i~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~----~~~~Gt~~dlk~lV~~~H~~Gi~VilD~V~NH 230 (613)
T TIGR01515 155 YRELADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAP----TSRFGTPDDFMYFVDACHQAGIGVILDWVPGH 230 (613)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCccc----ccccCCHHHHHHHHHHHHHCCCEEEEEecccC
Confidence 45566774 99999999999999998864 3469999999983 44577766667779999999999999999999
Q ss_pred hc
Q 047360 82 RM 83 (104)
Q Consensus 82 ~~ 83 (104)
-.
T Consensus 231 ~~ 232 (613)
T TIGR01515 231 FP 232 (613)
T ss_pred cC
Confidence 64
No 20
>PRK12313 glycogen branching enzyme; Provisional
Probab=98.98 E-value=5.6e-10 Score=95.57 Aligned_cols=77 Identities=17% Similarity=0.039 Sum_probs=63.6
Q ss_pred hHHHHhh-hhHHHHcCCCeEEcCCCCCCC--CCCCCCccccccCCCCCccccCccccchhhHHHHHHhcccchhhhhhhh
Q 047360 5 YNFLKKR-IPDIANAGTTHVWLPPPSQHA--APQEKKEKAKNRNAPISNFELGALRIPKSNLLSLHLHQQTQKAKSTEKL 81 (104)
Q Consensus 5 Wk~Lk~~-apeLa~aGITaVWLPPpsKg~--s~~GY~pyDLyd~~~lgefdkgsvrt~k~~i~~l~~~~~~~~~d~v~~h 81 (104)
++-+.++ ++.|+++|||+|||.|..... ..-||.+.|+|.. +-.+|+...-|.=|+++|++||.|++|+|.||
T Consensus 169 ~~~~~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i----~~~~Gt~~d~k~lv~~~H~~Gi~VilD~V~nH 244 (633)
T PRK12313 169 YRELADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAP----TSRYGTPEDFMYLVDALHQNGIGVILDWVPGH 244 (633)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcC----CCCCCCHHHHHHHHHHHHHCCCEEEEEECCCC
Confidence 4556667 599999999999999998764 3569999999984 33477776667779999999999999999999
Q ss_pred hcCC
Q 047360 82 RMGG 85 (104)
Q Consensus 82 ~~g~ 85 (104)
-...
T Consensus 245 ~~~~ 248 (633)
T PRK12313 245 FPKD 248 (633)
T ss_pred CCCC
Confidence 7543
No 21
>PRK03705 glycogen debranching enzyme; Provisional
Probab=98.98 E-value=5.1e-10 Score=97.78 Aligned_cols=72 Identities=14% Similarity=-0.062 Sum_probs=56.9
Q ss_pred hhhHHHHcCCCeEEcCCCCCCCC-----------CCCCCccccccCCCCCccccCcc-----ccchhhHHHHHHhcccch
Q 047360 11 RIPDIANAGTTHVWLPPPSQHAA-----------PQEKKEKAKNRNAPISNFELGAL-----RIPKSNLLSLHLHQQTQK 74 (104)
Q Consensus 11 ~apeLa~aGITaVWLPPpsKg~s-----------~~GY~pyDLyd~~~lgefdkgsv-----rt~k~~i~~l~~~~~~~~ 74 (104)
+++.|+++|||+|||-|.....+ .-||.|.|+|.. +-.+|+- ..-|+=|++||++||.|+
T Consensus 184 ~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~----d~~ygt~~~~~~~efk~LV~~~H~~GI~VI 259 (658)
T PRK03705 184 MIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFAL----DPAYASGPETALDEFRDAVKALHKAGIEVI 259 (658)
T ss_pred chHHHHHcCCCEEEecCcccCCCcccccccccccccCccccccccc----ccccCCCCcchHHHHHHHHHHHHHCCCEEE
Confidence 58999999999999999988642 238999999984 2224442 233666999999999999
Q ss_pred hhhhhhhhcCCC
Q 047360 75 AKSTEKLRMGGS 86 (104)
Q Consensus 75 ~d~v~~h~~g~d 86 (104)
+|+|.||-.-++
T Consensus 260 lDvV~NHt~~~~ 271 (658)
T PRK03705 260 LDVVFNHSAELD 271 (658)
T ss_pred EEEcccCccCcC
Confidence 999999987543
No 22
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=98.95 E-value=8e-10 Score=101.88 Aligned_cols=82 Identities=13% Similarity=0.026 Sum_probs=63.2
Q ss_pred hhHHHHhhhhHHHHcCCCeEEcCCCCCC--------------------CCCCCCCccccccC-CCCC-ccccCccccc--
Q 047360 4 WYNFLKKRIPDIANAGTTHVWLPPPSQH--------------------AAPQEKKEKAKNRN-APIS-NFELGALRIP-- 59 (104)
Q Consensus 4 wWk~Lk~~apeLa~aGITaVWLPPpsKg--------------------~s~~GY~pyDLyd~-~~lg-efdkgsvrt~-- 59 (104)
-|+-|.++++.|+++|||+|||.|+..- ...-||+|.++|.. .++| +-.-++.|+.
T Consensus 478 tf~gl~ekLdYLkeLGVT~I~LmPv~d~~~~~e~~~~~~~~~~~~~~~~ynWGYdp~~yfape~~Ygtdp~dp~~ri~Ef 557 (1111)
T TIGR02102 478 TFAAFVEKLDYLQDLGVTHIQLLPVLSYFFVNEFKNKERMLDYASSNTNYNWGYDPQNYFALSGMYSEDPKDPELRIAEF 557 (1111)
T ss_pred CHHHHHHhHHHHHHcCCCEEEEcCccccccccccccccccccccccccccccCCCcCcCcccccccccCCcCccccHHHH
Confidence 3677888999999999999999999631 11369999999983 2333 2223455544
Q ss_pred hhhHHHHHHhcccchhhhhhhhhcCC
Q 047360 60 KSNLLSLHLHQQTQKAKSTEKLRMGG 85 (104)
Q Consensus 60 k~~i~~l~~~~~~~~~d~v~~h~~g~ 85 (104)
|+-|++||++||.|++|+|.||....
T Consensus 558 K~LV~alH~~GI~VILDVVyNHt~~~ 583 (1111)
T TIGR02102 558 KNLINEIHKRGMGVILDVVYNHTAKV 583 (1111)
T ss_pred HHHHHHHHHCCCEEEEeccccccccc
Confidence 77799999999999999999998643
No 23
>PRK05402 glycogen branching enzyme; Provisional
Probab=98.94 E-value=1.1e-09 Score=95.58 Aligned_cols=79 Identities=16% Similarity=0.095 Sum_probs=64.4
Q ss_pred hHHHHhhh-hHHHHcCCCeEEcCCCCCCC--CCCCCCccccccCCCCCccccCccccchhhHHHHHHhcccchhhhhhhh
Q 047360 5 YNFLKKRI-PDIANAGTTHVWLPPPSQHA--APQEKKEKAKNRNAPISNFELGALRIPKSNLLSLHLHQQTQKAKSTEKL 81 (104)
Q Consensus 5 Wk~Lk~~a-peLa~aGITaVWLPPpsKg~--s~~GY~pyDLyd~~~lgefdkgsvrt~k~~i~~l~~~~~~~~~d~v~~h 81 (104)
++-+.+++ +.|+++|||+|||-|..... ..-||.+.|+|.. +-.+|+...-|.=|+++|++||.|++|+|.||
T Consensus 264 ~~~i~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai----~~~~Gt~~dfk~lV~~~H~~Gi~VilD~V~NH 339 (726)
T PRK05402 264 YRELADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAP----TSRFGTPDDFRYFVDACHQAGIGVILDWVPAH 339 (726)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCc----CcccCCHHHHHHHHHHHHHCCCEEEEEECCCC
Confidence 45667774 99999999999999998754 3569999999973 33467766668889999999999999999999
Q ss_pred hcCCCC
Q 047360 82 RMGGSH 87 (104)
Q Consensus 82 ~~g~d~ 87 (104)
-...+|
T Consensus 340 ~~~~~~ 345 (726)
T PRK05402 340 FPKDAH 345 (726)
T ss_pred CCCCcc
Confidence 755444
No 24
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=98.83 E-value=3.7e-09 Score=100.82 Aligned_cols=75 Identities=16% Similarity=0.107 Sum_probs=63.9
Q ss_pred hHHHHhhhhHHHHcCCCeEEcCCCCCCC--CCCCCCccccccCCCCCccccCccccchhhHHHHHHhcccchhhhhhhhh
Q 047360 5 YNFLKKRIPDIANAGTTHVWLPPPSQHA--APQEKKEKAKNRNAPISNFELGALRIPKSNLLSLHLHQQTQKAKSTEKLR 82 (104)
Q Consensus 5 Wk~Lk~~apeLa~aGITaVWLPPpsKg~--s~~GY~pyDLyd~~~lgefdkgsvrt~k~~i~~l~~~~~~~~~d~v~~h~ 82 (104)
++.+.++++.|+++|||+|||.|..++. +..||++.|+|.. +-++|+...-+.=|+++|++||.|++|+|.||.
T Consensus 757 f~~~~~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~i----dp~lG~~edf~~Lv~~ah~~Gi~vilDiV~NH~ 832 (1693)
T PRK14507 757 FADAEAILPYLAALGISHVYASPILKARPGSTHGYDIVDHSQI----NPEIGGEEGFERFCAALKAHGLGQLLDIVPNHM 832 (1693)
T ss_pred HHHHHHHhHHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCcc----CcccCCHHHHHHHHHHHHHCCCEEEEEeccccc
Confidence 4568899999999999999999999973 6779999999984 334677554466699999999999999999998
Q ss_pred c
Q 047360 83 M 83 (104)
Q Consensus 83 ~ 83 (104)
.
T Consensus 833 ~ 833 (1693)
T PRK14507 833 G 833 (1693)
T ss_pred C
Confidence 7
No 25
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=98.81 E-value=2.9e-09 Score=98.39 Aligned_cols=74 Identities=11% Similarity=-0.069 Sum_probs=59.8
Q ss_pred hhhhHHHHcCCCeEEcCCCCCCCCC-----------CCCCccccccCCCCCccccC--ccccchhhHHHHHHhcccchhh
Q 047360 10 KRIPDIANAGTTHVWLPPPSQHAAP-----------QEKKEKAKNRNAPISNFELG--ALRIPKSNLLSLHLHQQTQKAK 76 (104)
Q Consensus 10 ~~apeLa~aGITaVWLPPpsKg~s~-----------~GY~pyDLyd~~~lgefdkg--svrt~k~~i~~l~~~~~~~~~d 76 (104)
+.++.|+++|||+|||-|.....+. =||.|.|+|.. +-.+| ++..-|.=|++||++||.|++|
T Consensus 191 ~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~----dp~yg~~~~~efk~lV~~~H~~GI~VILD 266 (1221)
T PRK14510 191 EAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAP----DPRLAPGGEEEFAQAIKEAQSAGIAVILD 266 (1221)
T ss_pred hhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCc----ChhhccCcHHHHHHHHHHHHHCCCEEEEE
Confidence 5678999999999999999987532 26999999983 22355 5544477799999999999999
Q ss_pred hhhhhhcCCCC
Q 047360 77 STEKLRMGGSH 87 (104)
Q Consensus 77 ~v~~h~~g~d~ 87 (104)
+|.||-.-+++
T Consensus 267 vV~NHt~~~~~ 277 (1221)
T PRK14510 267 VVFNHTGESNH 277 (1221)
T ss_pred EccccccCCCC
Confidence 99999886654
No 26
>PRK12568 glycogen branching enzyme; Provisional
Probab=98.77 E-value=8.8e-09 Score=91.77 Aligned_cols=80 Identities=15% Similarity=0.065 Sum_probs=65.2
Q ss_pred hHHHHhh-hhHHHHcCCCeEEcCCCCCCC--CCCCCCccccccCCCCCccccCccccchhhHHHHHHhcccchhhhhhhh
Q 047360 5 YNFLKKR-IPDIANAGTTHVWLPPPSQHA--APQEKKEKAKNRNAPISNFELGALRIPKSNLLSLHLHQQTQKAKSTEKL 81 (104)
Q Consensus 5 Wk~Lk~~-apeLa~aGITaVWLPPpsKg~--s~~GY~pyDLyd~~~lgefdkgsvrt~k~~i~~l~~~~~~~~~d~v~~h 81 (104)
|..|.++ ++.|+++|||+|||-|.+... ..-||.|.++|.. +...|+...-|.=|++||++||.|++|+|.||
T Consensus 268 ~~~la~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~----~~~~G~~~dfk~lV~~~H~~Gi~VIlD~V~nH 343 (730)
T PRK12568 268 WPTLAEQLIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAP----TARHGSPDGFAQFVDACHRAGIGVILDWVSAH 343 (730)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCcc----CcccCCHHHHHHHHHHHHHCCCEEEEEecccc
Confidence 6677776 699999999999999998764 4569999999973 33467766667779999999999999999999
Q ss_pred hcCCCCC
Q 047360 82 RMGGSHS 88 (104)
Q Consensus 82 ~~g~d~~ 88 (104)
-.-..|.
T Consensus 344 ~~~d~~~ 350 (730)
T PRK12568 344 FPDDAHG 350 (730)
T ss_pred CCccccc
Confidence 7654453
No 27
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=98.72 E-value=1.3e-08 Score=91.02 Aligned_cols=72 Identities=14% Similarity=-0.034 Sum_probs=61.5
Q ss_pred HhhhhHHHHcCCCeEEcCCCCCCC--CCCCCCccccccCCCCCccccCccccchhhHHHHHHhcccchhhhhhhhhcC
Q 047360 9 KKRIPDIANAGTTHVWLPPPSQHA--APQEKKEKAKNRNAPISNFELGALRIPKSNLLSLHLHQQTQKAKSTEKLRMG 84 (104)
Q Consensus 9 k~~apeLa~aGITaVWLPPpsKg~--s~~GY~pyDLyd~~~lgefdkgsvrt~k~~i~~l~~~~~~~~~d~v~~h~~g 84 (104)
.+.++.|+++|||+|||-|..... ..-||.+.++|.. +...|+...-|.-|++||++||.|++|+|.||-..
T Consensus 254 ~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~----~~~~Gtp~dlk~LVd~aH~~GI~VilDvV~nH~~~ 327 (758)
T PLN02447 254 DDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAV----SSRSGTPEDLKYLIDKAHSLGLRVLMDVVHSHASK 327 (758)
T ss_pred HHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCccc----ccccCCHHHHHHHHHHHHHCCCEEEEEeccccccc
Confidence 457999999999999999998864 4679999999994 33467766668889999999999999999999864
No 28
>PRK14706 glycogen branching enzyme; Provisional
Probab=98.71 E-value=1.2e-08 Score=88.94 Aligned_cols=74 Identities=19% Similarity=0.020 Sum_probs=61.4
Q ss_pred hHHHHhhh-hHHHHcCCCeEEcCCCCCCC--CCCCCCccccccCCCCCccccCccccchhhHHHHHHhcccchhhhhhhh
Q 047360 5 YNFLKKRI-PDIANAGTTHVWLPPPSQHA--APQEKKEKAKNRNAPISNFELGALRIPKSNLLSLHLHQQTQKAKSTEKL 81 (104)
Q Consensus 5 Wk~Lk~~a-peLa~aGITaVWLPPpsKg~--s~~GY~pyDLyd~~~lgefdkgsvrt~k~~i~~l~~~~~~~~~d~v~~h 81 (104)
|+.+.+++ +.|+++|||+|||=|..... ..-||.+.++|.. +...|+...-|.=|++||++||.|++|+|.||
T Consensus 166 y~~~~~~l~~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~----~~~~g~~~~~~~lv~~~H~~gi~VilD~v~nH 241 (639)
T PRK14706 166 YRELAHRLGEYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAP----TSRLGTPEDFKYLVNHLHGLGIGVILDWVPGH 241 (639)
T ss_pred HHHHHHHHHHHHHHcCCCEEEccchhcCCCCCCCCcCccccccc----ccccCCHHHHHHHHHHHHHCCCEEEEEecccc
Confidence 55677775 78999999999999998753 4569999999883 33367776668889999999999999999999
Q ss_pred h
Q 047360 82 R 82 (104)
Q Consensus 82 ~ 82 (104)
-
T Consensus 242 ~ 242 (639)
T PRK14706 242 F 242 (639)
T ss_pred c
Confidence 4
No 29
>PRK14705 glycogen branching enzyme; Provisional
Probab=98.69 E-value=1.6e-08 Score=94.17 Aligned_cols=75 Identities=17% Similarity=0.030 Sum_probs=62.0
Q ss_pred hHHHHhh-hhHHHHcCCCeEEcCCCCCCC--CCCCCCccccccCCCCCccccCccccchhhHHHHHHhcccchhhhhhhh
Q 047360 5 YNFLKKR-IPDIANAGTTHVWLPPPSQHA--APQEKKEKAKNRNAPISNFELGALRIPKSNLLSLHLHQQTQKAKSTEKL 81 (104)
Q Consensus 5 Wk~Lk~~-apeLa~aGITaVWLPPpsKg~--s~~GY~pyDLyd~~~lgefdkgsvrt~k~~i~~l~~~~~~~~~d~v~~h 81 (104)
|+.+.++ ++.|+++|||+|||=|.+... ..-||.|.++|-. +..+|+...-|.=|++||++||.|++|+|.||
T Consensus 764 ~~~l~~~lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap----~~ryGt~~dfk~lVd~~H~~GI~VILD~V~nH 839 (1224)
T PRK14705 764 YRELAKELVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAP----TSRFGHPDEFRFLVDSLHQAGIGVLLDWVPAH 839 (1224)
T ss_pred hHHHHHHHHHHHHHhCCCEEEECccccCCCCCCCCCCccccCCc----CcccCCHHHHHHHHHHHHHCCCEEEEEecccc
Confidence 5666666 699999999999999998764 4569999999993 33466655557779999999999999999999
Q ss_pred hc
Q 047360 82 RM 83 (104)
Q Consensus 82 ~~ 83 (104)
-.
T Consensus 840 ~~ 841 (1224)
T PRK14705 840 FP 841 (1224)
T ss_pred CC
Confidence 63
No 30
>PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) (2.4.1.5 from EC, GH70 from CAZY) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules []. This signature roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this group also contain the putative cell wall binding repeat (IPR002479 from INTERPRO).; GO: 0009250 glucan biosynthetic process; PDB: 3AIE_G 3AIB_D 3AIC_E 3TTQ_A 3TTO_D 3KLL_A 3KLK_A 3HZ3_A.
Probab=98.68 E-value=1.1e-08 Score=92.09 Aligned_cols=77 Identities=10% Similarity=0.016 Sum_probs=53.1
Q ss_pred hHHHHhhhhHHHHcCCCeEEcCCCCCCC---------CCCCCCccccccCCCCCccccCccccchhhHHHHHHhcccchh
Q 047360 5 YNFLKKRIPDIANAGTTHVWLPPPSQHA---------APQEKKEKAKNRNAPISNFELGALRIPKSNLLSLHLHQQTQKA 75 (104)
Q Consensus 5 Wk~Lk~~apeLa~aGITaVWLPPpsKg~---------s~~GY~pyDLyd~~~lgefdkgsvrt~k~~i~~l~~~~~~~~~ 75 (104)
.+.+++.+.-+++.|||..||+|.+.+. -..||.-.|-||+..--.=-+||+.-.+..|++||..||||+|
T Consensus 586 N~~IA~Na~lFk~wGITsFemAPQY~Ss~D~tFLDSiiqNGYAFtDRYDLg~s~ptKYGs~~dL~~AikALH~~Giqvia 665 (809)
T PF02324_consen 586 NVVIAKNADLFKSWGITSFEMAPQYRSSTDGTFLDSIIQNGYAFTDRYDLGMSKPTKYGSVEDLRNAIKALHAAGIQVIA 665 (809)
T ss_dssp HHHHHHTHHHHHHTTEEEEE----S-B--SSSSHHHHTT-SSSBS-TT-SSSSS-BTTB-HHHHHHHHHHHHHTT-EEEE
T ss_pred HHHHHHhHHHHHhcCcceeeeCcceecCCCCcchhhHhhcCccccchhhhcCCCCCCCCCHHHHHHHHHHHHHcCcchhh
Confidence 4678999999999999999999999974 2569999999994322111278887778889999999999999
Q ss_pred hhhhhh
Q 047360 76 KSTEKL 81 (104)
Q Consensus 76 d~v~~h 81 (104)
|.|.+.
T Consensus 666 DwVpdQ 671 (809)
T PF02324_consen 666 DWVPDQ 671 (809)
T ss_dssp EE-TSE
T ss_pred hhchHh
Confidence 999864
No 31
>PLN02960 alpha-amylase
Probab=98.64 E-value=3.1e-08 Score=90.30 Aligned_cols=77 Identities=13% Similarity=0.019 Sum_probs=62.5
Q ss_pred hHHHH-hhhhHHHHcCCCeEEcCCCCCCC--CCCCCCccccccCCCCCccccCccccchhhHHHHHHhcccchhhhhhhh
Q 047360 5 YNFLK-KRIPDIANAGTTHVWLPPPSQHA--APQEKKEKAKNRNAPISNFELGALRIPKSNLLSLHLHQQTQKAKSTEKL 81 (104)
Q Consensus 5 Wk~Lk-~~apeLa~aGITaVWLPPpsKg~--s~~GY~pyDLyd~~~lgefdkgsvrt~k~~i~~l~~~~~~~~~d~v~~h 81 (104)
++-+. +.++.|+++|||+|||=|..... .+-||.+.++|.- +..+|+...-|.=|+++|++||.|++|+|.||
T Consensus 415 f~~~~e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~----~~~yGtp~dfk~LVd~aH~~GI~VILDvV~NH 490 (897)
T PLN02960 415 FKEFTQKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAV----SSRFGTPDDFKRLVDEAHGLGLLVFLDIVHSY 490 (897)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCc----ccccCCHHHHHHHHHHHHHCCCEEEEEecccc
Confidence 44555 45999999999999999998643 5679999999983 33467765557779999999999999999999
Q ss_pred hcCC
Q 047360 82 RMGG 85 (104)
Q Consensus 82 ~~g~ 85 (104)
-.-.
T Consensus 491 ~~~d 494 (897)
T PLN02960 491 AAAD 494 (897)
T ss_pred cCCc
Confidence 7543
No 32
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=98.54 E-value=6.3e-08 Score=86.12 Aligned_cols=88 Identities=17% Similarity=0.033 Sum_probs=66.3
Q ss_pred HHHhh--hhHHHHcCCCeEEcCCCCCCC-----------CCCCCCccccccCCCCCccc-cC--ccccc--hhhHHHHHH
Q 047360 7 FLKKR--IPDIANAGTTHVWLPPPSQHA-----------APQEKKEKAKNRNAPISNFE-LG--ALRIP--KSNLLSLHL 68 (104)
Q Consensus 7 ~Lk~~--apeLa~aGITaVWLPPpsKg~-----------s~~GY~pyDLyd~~~lgefd-kg--svrt~--k~~i~~l~~ 68 (104)
-|.+. ++.|+++|||+|=|=|...-. .-=||.|+-.|-+ =|-+. .+ +-|++ |.-|++||+
T Consensus 199 gl~~~~~i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp--~~~Yss~p~p~~~i~EfK~mV~~lHk 276 (697)
T COG1523 199 GLAEPVIIDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAP--EGRYASNPEPATRIKEFKDMVKALHK 276 (697)
T ss_pred hhccccHHHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCC--CccccCCCCcchHHHHHHHHHHHHHH
Confidence 34455 899999999999988876431 1229999999985 33444 22 23333 888999999
Q ss_pred hcccchhhhhhhhhcCCCCCCcCCCCCC
Q 047360 69 HQQTQKAKSTEKLRMGGSHSREDLDISD 96 (104)
Q Consensus 69 ~~~~~~~d~v~~h~~g~d~~~~~~~~~~ 96 (104)
+||.|+.|+|-||-+.|+|..+.+-...
T Consensus 277 aGI~VILDVVfNHTae~~~~g~t~~f~~ 304 (697)
T COG1523 277 AGIEVILDVVFNHTAEGNELGPTLSFRG 304 (697)
T ss_pred cCCEEEEEEeccCcccccCcCccccccc
Confidence 9999999999999999999877665443
No 33
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=98.35 E-value=2.7e-07 Score=82.41 Aligned_cols=64 Identities=8% Similarity=-0.047 Sum_probs=55.1
Q ss_pred hHHHHcCCCeEEcCCCCCC---------C-CCCCCCccccccCCCCCccc--cCccccchhhHHHHHHhcccchhhhhhh
Q 047360 13 PDIANAGTTHVWLPPPSQH---------A-APQEKKEKAKNRNAPISNFE--LGALRIPKSNLLSLHLHQQTQKAKSTEK 80 (104)
Q Consensus 13 peLa~aGITaVWLPPpsKg---------~-s~~GY~pyDLyd~~~lgefd--kgsvrt~k~~i~~l~~~~~~~~~d~v~~ 80 (104)
+.|+++||+.|||.|.+++ . .+.||++.| |. +| .||...-+.-|++.|++||.|+.|+|.|
T Consensus 81 dyL~~LGV~~iwl~P~~~SGgi~g~~~tP~~D~gyDi~d-~~------Idp~~GT~eDf~~L~~~Ah~~G~~vi~DlVpn 153 (688)
T TIGR02455 81 KALSEIGVQGIHNGPIKLSGGIRGREFTPSIDGNFDRIS-FD------IDPLLGSEEELIQLSRMAAAHNAITIDDIIPA 153 (688)
T ss_pred HHHHHhCCCEEEeCcceecccccccCCCCCCCCCCCccc-Cc------cCcccCCHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 5678899999999999999 3 477999988 54 44 7888777777999999999999999999
Q ss_pred hhc
Q 047360 81 LRM 83 (104)
Q Consensus 81 h~~ 83 (104)
|-.
T Consensus 154 HTs 156 (688)
T TIGR02455 154 HTG 156 (688)
T ss_pred CCC
Confidence 974
No 34
>PLN02877 alpha-amylase/limit dextrinase
Probab=98.22 E-value=1.2e-06 Score=80.47 Aligned_cols=73 Identities=18% Similarity=0.104 Sum_probs=55.6
Q ss_pred hhhHHHHcCCCeEEcCCCCCCC---------------------------------------CCCCCCccccccCCCCCcc
Q 047360 11 RIPDIANAGTTHVWLPPPSQHA---------------------------------------APQEKKEKAKNRNAPISNF 51 (104)
Q Consensus 11 ~apeLa~aGITaVWLPPpsKg~---------------------------------------s~~GY~pyDLyd~~~lgef 51 (104)
.+++|+++|||+|.|=|.+.-. ..=||+|..+|-. =|-|
T Consensus 378 hLk~LkelGVThVeLLPvfDf~tvdE~~~~~~~~~~~~l~~~~~~s~~~q~~v~~~~~~d~yNWGYDP~~YfaP--EgSY 455 (970)
T PLN02877 378 HLKKLADAGLTHVHLLPTFQFGSVDDEKENWKCVDPKELEKLPPDSEEQQAAITAIQDDDGYNWGYNPVLWGVP--KGSY 455 (970)
T ss_pred HHHHHHHcCCCEEEeCCccccCCcccccccccccccchhccccccchhhhhcccccccCCCCCCCCCccccCCC--Cccc
Confidence 4778888899999999987521 1129999998872 2222
Q ss_pred c---cCccccc--hhhHHHHHHhcccchhhhhhhhhcCC
Q 047360 52 E---LGALRIP--KSNLLSLHLHQQTQKAKSTEKLRMGG 85 (104)
Q Consensus 52 d---kgsvrt~--k~~i~~l~~~~~~~~~d~v~~h~~g~ 85 (104)
- -|..|++ |.-|++||++||.|+.|+|.||-..+
T Consensus 456 atdP~g~~RI~efk~mV~~lH~~GI~VImDVVyNHt~~~ 494 (970)
T PLN02877 456 ASNPDGPCRIIEFRKMVQALNRIGLRVVLDVVYNHLHSS 494 (970)
T ss_pred ccCCCCcchHHHHHHHHHHHHHCCCEEEEEECCccccCC
Confidence 2 2456666 66699999999999999999999764
No 35
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=98.03 E-value=3.6e-06 Score=76.77 Aligned_cols=48 Identities=8% Similarity=-0.063 Sum_probs=37.7
Q ss_pred CCCcccccc--CCCCCccccCccccc--hhhHHHHHHhcccchhhhhhhhhcC
Q 047360 36 EKKEKAKNR--NAPISNFELGALRIP--KSNLLSLHLHQQTQKAKSTEKLRMG 84 (104)
Q Consensus 36 GY~pyDLyd--~~~lgefdkgsvrt~--k~~i~~l~~~~~~~~~d~v~~h~~g 84 (104)
||+|..+|- .||-.+- -|+.|++ |+-|++||++||.|++|+|.||-.-
T Consensus 380 GYDP~~y~aPegSYatdp-~g~~Ri~Efk~mV~alH~~Gi~VIlDVVyNHt~~ 431 (898)
T TIGR02103 380 GYDPFHYTVPEGSYATDP-EGPARIKEFREMVQALNKTGLNVVMDVVYNHTNA 431 (898)
T ss_pred CCCCcccCCcChhhccCC-CCchHHHHHHHHHHHHHHCCCEEEEEeecccccc
Confidence 899999876 2333322 3677777 7779999999999999999999764
No 36
>TIGR03852 sucrose_gtfA sucrose phosphorylase. In the forward direction, this enzyme uses phosphate to cleave sucrose into D-fructose + alpha-D-glucose 1-phosphate. Characterized representatives from Streptococcus mutans and Bifidobacterium adolescentis represent well-separated branches of a molecular phylogenetic tree. In S. mutans, the region including this gene has been associated with neighboring transporter genes and multiple sugar metabolism.
Probab=97.92 E-value=1.4e-05 Score=68.43 Aligned_cols=66 Identities=11% Similarity=-0.031 Sum_probs=50.6
Q ss_pred HHHHhhhh-HHHHcCCCeEEcCCCCCCCCCCCCCcccccc-CCCCCccccCccccchhhHHHHHHhcccchhhhhhhhh
Q 047360 6 NFLKKRIP-DIANAGTTHVWLPPPSQHAAPQEKKEKAKNR-NAPISNFELGALRIPKSNLLSLHLHQQTQKAKSTEKLR 82 (104)
Q Consensus 6 k~Lk~~ap-eLa~aGITaVWLPPpsKg~s~~GY~pyDLyd-~~~lgefdkgsvrt~k~~i~~l~~~~~~~~~d~v~~h~ 82 (104)
..|+..+. .|+. ||+.|||-|.+.+.++.||++.|++. ..++| +. +.+++|-+. +.|.+|.|+||-
T Consensus 17 gdl~g~l~~yL~~-~v~~i~LlPffps~sD~GYdv~DY~~VDP~~G-----t~----~Df~~L~~~-~kvmlDlV~NHt 84 (470)
T TIGR03852 17 KELNKVLENYFKD-AVGGVHLLPFFPSTGDRGFAPMDYTEVDPAFG-----DW----SDVEALSEK-YYLMFDFMINHI 84 (470)
T ss_pred hhHHHHHHHHHHH-hCCEEEECCCCcCCCCCCcCchhhceeCcccC-----CH----HHHHHHHHh-hhHHhhhccccc
Confidence 34555555 7877 89999999999998899999999997 33344 32 345666554 899999999994
No 37
>PRK13840 sucrose phosphorylase; Provisional
Probab=97.84 E-value=1.8e-05 Score=68.16 Aligned_cols=67 Identities=10% Similarity=0.036 Sum_probs=53.4
Q ss_pred hHHHHhhhhH-HHHcCCCeEEcCCCCCC--CCCCCCCcccccc-CCCCCccccCccccchhhHHHHHHhcccchhhhhhh
Q 047360 5 YNFLKKRIPD-IANAGTTHVWLPPPSQH--AAPQEKKEKAKNR-NAPISNFELGALRIPKSNLLSLHLHQQTQKAKSTEK 80 (104)
Q Consensus 5 Wk~Lk~~ape-La~aGITaVWLPPpsKg--~s~~GY~pyDLyd-~~~lgefdkgsvrt~k~~i~~l~~~~~~~~~d~v~~ 80 (104)
.+-|.++++. |+.+ |+.|||=|+++. .++.||++.|++. +.++ |+. +++++|-+ ||.|.+|+|.|
T Consensus 19 L~gl~~kLd~yL~~l-v~~vhllPff~psp~sD~GYdv~DY~~VDP~f-----Gt~----eDf~~L~~-giklmlDlV~N 87 (495)
T PRK13840 19 LKSLTALLDGRLDGL-FGGVHILPFFYPIDGADAGFDPIDHTKVDPRL-----GDW----DDVKALGK-THDIMADLIVN 87 (495)
T ss_pred HhHHHHHHHHHHHHH-hCeEEECCCccCCCCCCCCCCCcChhhcCccc-----CCH----HHHHHHHh-CCeEEEEECCC
Confidence 5678899994 9999 999999999963 4688999999997 3333 432 34666664 99999999999
Q ss_pred hh
Q 047360 81 LR 82 (104)
Q Consensus 81 h~ 82 (104)
|-
T Consensus 88 Ht 89 (495)
T PRK13840 88 HM 89 (495)
T ss_pred cC
Confidence 94
No 38
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=97.68 E-value=4.5e-05 Score=72.92 Aligned_cols=77 Identities=6% Similarity=-0.045 Sum_probs=58.0
Q ss_pred HHHHhhhhHHHHcCCCeEEcCCCC-CCCCCCCCCccccccCCC-CCccccCccccchhhHHHHHHh-cccchhhhhhhhh
Q 047360 6 NFLKKRIPDIANAGTTHVWLPPPS-QHAAPQEKKEKAKNRNAP-ISNFELGALRIPKSNLLSLHLH-QQTQKAKSTEKLR 82 (104)
Q Consensus 6 k~Lk~~apeLa~aGITaVWLPPps-Kg~s~~GY~pyDLyd~~~-lgefdkgsvrt~k~~i~~l~~~-~~~~~~d~v~~h~ 82 (104)
+...++++.|++.|++.|||+|-. .|.+..-|..+|.+.-.+ +|. ++|+..--++-|+++|+. ||-+..|+|.||-
T Consensus 132 ~~w~~~L~~ik~lGyN~IhftPI~~~G~SnS~Ysi~Dyl~idP~~~~-~~~~~~d~~~lV~~~h~~~Gm~~ilDvV~NHT 210 (1464)
T TIGR01531 132 SEWEPRLRVAKEKGYNMIHFTPLQELGGSNSCYSLYDQLQLNQHFKS-QKDGKNDVQALVEKLHRDWNVLSITDIVFNHT 210 (1464)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCccccchhhcChhhcc-cCCcHHHHHHHHHHHHHhcCCEEEEEeeeccc
Confidence 556788999999999999999999 677777888888776322 221 113332224559999996 9999999999997
Q ss_pred c
Q 047360 83 M 83 (104)
Q Consensus 83 ~ 83 (104)
+
T Consensus 211 a 211 (1464)
T TIGR01531 211 A 211 (1464)
T ss_pred c
Confidence 5
No 39
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=97.63 E-value=6.7e-05 Score=66.62 Aligned_cols=87 Identities=14% Similarity=0.084 Sum_probs=65.6
Q ss_pred hhHHHHhhhhHHHHcCCCeEEcCCCCCCC--CCCCCCcccccc-CCCCCccccCccccchhhHHHHHHhcccchhhhhhh
Q 047360 4 WYNFLKKRIPDIANAGTTHVWLPPPSQHA--APQEKKEKAKNR-NAPISNFELGALRIPKSNLLSLHLHQQTQKAKSTEK 80 (104)
Q Consensus 4 wWk~Lk~~apeLa~aGITaVWLPPpsKg~--s~~GY~pyDLyd-~~~lgefdkgsvrt~k~~i~~l~~~~~~~~~d~v~~ 80 (104)
+.+-..+++|.|+++|||+|=|=|-..-. .+=||.+-=+|- -||+| +-.--|.=|+++|.+||.|++|+|-|
T Consensus 163 ~~e~a~~llpYl~elG~T~IELMPv~e~p~~~sWGYq~~g~yAp~sryG-----tPedfk~fVD~aH~~GIgViLD~V~~ 237 (628)
T COG0296 163 YFELAIELLPYLKELGITHIELMPVAEHPGDRSWGYQGTGYYAPTSRYG-----TPEDFKALVDAAHQAGIGVILDWVPN 237 (628)
T ss_pred HHHHHHHHhHHHHHhCCCEEEEcccccCCCCCCCCCCcceeccccccCC-----CHHHHHHHHHHHHHcCCEEEEEecCC
Confidence 45666789999999999999998887754 344999999998 34444 33333666999999999999999999
Q ss_pred hhc---------CCCCCCcCCCCC
Q 047360 81 LRM---------GGSHSREDLDIS 95 (104)
Q Consensus 81 h~~---------g~d~~~~~~~~~ 95 (104)
|-- .|.+..|.-|.+
T Consensus 238 HF~~d~~~L~~fdg~~~~e~~~~~ 261 (628)
T COG0296 238 HFPPDGNYLARFDGTFLYEHEDPR 261 (628)
T ss_pred cCCCCcchhhhcCCccccccCCcc
Confidence 953 455555554443
No 40
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=97.44 E-value=0.00013 Score=66.15 Aligned_cols=85 Identities=12% Similarity=0.002 Sum_probs=68.8
Q ss_pred hHHHHhh-hhHHHHcCCCeEEcCCCCCC-C--CCCCCCcccccc-CCCCCccc-cCccccchhhHHHHHHhcccchhhhh
Q 047360 5 YNFLKKR-IPDIANAGTTHVWLPPPSQH-A--APQEKKEKAKNR-NAPISNFE-LGALRIPKSNLLSLHLHQQTQKAKST 78 (104)
Q Consensus 5 Wk~Lk~~-apeLa~aGITaVWLPPpsKg-~--s~~GY~pyDLyd-~~~lgefd-kgsvrt~k~~i~~l~~~~~~~~~d~v 78 (104)
|..+.++ +|.|+.+|+++|=|=|--.- . +.-||-|-..|- .+|+|--+ .+.+-.-|.=|++||.-||.|.+|||
T Consensus 253 Y~~FteKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~nFFapssrYgt~~s~~ri~efK~lVd~aHs~GI~VlLDVV 332 (757)
T KOG0470|consen 253 YLGFTEKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTNFFAPSSRYGTPESPCRINEFKELVDKAHSLGIEVLLDVV 332 (757)
T ss_pred hhhhhhhhhhHHHHhCccceEEeehhhhhhhhhccCcceeEeecccccccCCCcccchHHHHHHHHHHhhCCcEEehhhh
Confidence 7888888 99999999999999887765 2 577999999998 56676666 33322337779999999999999999
Q ss_pred hhhhcCCCCCC
Q 047360 79 EKLRMGGSHSR 89 (104)
Q Consensus 79 ~~h~~g~d~~~ 89 (104)
.||-+-++|-.
T Consensus 333 ~sHaa~n~~d~ 343 (757)
T KOG0470|consen 333 HSHAAKNSKDG 343 (757)
T ss_pred hhhcccCcCCc
Confidence 99988766643
No 41
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=97.30 E-value=0.00019 Score=65.89 Aligned_cols=76 Identities=14% Similarity=0.076 Sum_probs=60.0
Q ss_pred HHHHhhhhHHHHcCCCeEEcCCCCCCC--CCCCCCccccccCCCCCccccCccccchhhHHHHHHhcccchhhhhhhhhc
Q 047360 6 NFLKKRIPDIANAGTTHVWLPPPSQHA--APQEKKEKAKNRNAPISNFELGALRIPKSNLLSLHLHQQTQKAKSTEKLRM 83 (104)
Q Consensus 6 k~Lk~~apeLa~aGITaVWLPPpsKg~--s~~GY~pyDLyd~~~lgefdkgsvrt~k~~i~~l~~~~~~~~~d~v~~h~~ 83 (104)
..-.+.+|.|+++||+++++.|=.++. |..||++-|--.. |=++|.-.--..=+.+||..||.++.|||=||-+
T Consensus 19 ~~A~~~l~yl~~LGIShLY~SPIftA~pGStHGYDVvD~t~I----nPeLGG~egl~rLvaalk~~GlGlI~DIVPNHMa 94 (889)
T COG3280 19 ADARALLDYLADLGISHLYLSPIFTARPGSTHGYDVVDPTEI----NPELGGEEGLERLVAALKSRGLGLIVDIVPNHMA 94 (889)
T ss_pred HHHHHhhHHHHhcCchheeccchhhcCCCCCCCccCCCcccc----ChhhcChHHHHHHHHHHHhcCCceEEEecccchh
Confidence 345678999999999999999999986 7779999886652 2235544333444999999999999999999965
Q ss_pred CC
Q 047360 84 GG 85 (104)
Q Consensus 84 g~ 85 (104)
=|
T Consensus 95 v~ 96 (889)
T COG3280 95 VG 96 (889)
T ss_pred cc
Confidence 44
No 42
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=94.02 E-value=0.081 Score=45.48 Aligned_cols=76 Identities=11% Similarity=0.030 Sum_probs=50.5
Q ss_pred HHHhhhhHHHHcCCCeEEcCCCCCC-CCCCCCCccccccCCCCCccccCc-cccc--hhhHHHH-HHhcccchhhhhhhh
Q 047360 7 FLKKRIPDIANAGTTHVWLPPPSQH-AAPQEKKEKAKNRNAPISNFELGA-LRIP--KSNLLSL-HLHQQTQKAKSTEKL 81 (104)
Q Consensus 7 ~Lk~~apeLa~aGITaVWLPPpsKg-~s~~GY~pyDLyd~~~lgefdkgs-vrt~--k~~i~~l-~~~~~~~~~d~v~~h 81 (104)
...+..+.+++.|+..|-++|--+- .|..=|.++|-....+- =|+.+. .... ++-|.++ +++||-+..|+|+||
T Consensus 23 ~W~~~l~~~~~~GYNmIHftPlq~~G~S~S~YSI~Dql~~~~~-~~~~~~~~~~~~v~~~v~~~~~~~~ll~~~DvV~NH 101 (423)
T PF14701_consen 23 DWEKHLKVISEKGYNMIHFTPLQERGESNSPYSIYDQLKFDPD-FFPPGKESTFEDVKEFVKEAEKKYGLLSMTDVVLNH 101 (423)
T ss_pred HHHHHHHHHHHcCCcEEEecccccCCCCCCCccccchhhcChh-hcCCCccccHHHHHHHHHHHHHHcCceEEEEEeecc
Confidence 3445668899999999999998874 46666777766553211 111111 1111 3337777 589999999999999
Q ss_pred hc
Q 047360 82 RM 83 (104)
Q Consensus 82 ~~ 83 (104)
-+
T Consensus 102 tA 103 (423)
T PF14701_consen 102 TA 103 (423)
T ss_pred Cc
Confidence 76
No 43
>TIGR03356 BGL beta-galactosidase.
Probab=90.37 E-value=0.29 Score=40.94 Aligned_cols=64 Identities=8% Similarity=-0.004 Sum_probs=51.0
Q ss_pred chhHHHHhhhhHHHHcCCCeEEcCCCCCCCCCCCCCccccccCCCCCccccCccccchhhHHHHHHhcccchhhh
Q 047360 3 GWYNFLKKRIPDIANAGTTHVWLPPPSQHAAPQEKKEKAKNRNAPISNFELGALRIPKSNLLSLHLHQQTQKAKS 77 (104)
Q Consensus 3 ~wWk~Lk~~apeLa~aGITaVWLPPpsKg~s~~GY~pyDLyd~~~lgefdkgsvrt~k~~i~~l~~~~~~~~~d~ 77 (104)
.+|.+.++.+..|+++||+++=++=.+--..|.|- |+++...|.--+.-|++|.++||++.+++
T Consensus 51 d~y~~y~eDi~l~~~~G~~~~R~si~Wsri~p~g~-----------~~~n~~~~~~y~~~i~~l~~~gi~pivtL 114 (427)
T TIGR03356 51 DHYHRYEEDVALMKELGVDAYRFSIAWPRIFPEGT-----------GPVNPKGLDFYDRLVDELLEAGIEPFVTL 114 (427)
T ss_pred cHHHhHHHHHHHHHHcCCCeEEcccchhhcccCCC-----------CCcCHHHHHHHHHHHHHHHHcCCeeEEee
Confidence 58999999999999999999999988887777763 23443334333556999999999999876
No 44
>PLN03244 alpha-amylase; Provisional
Probab=86.48 E-value=0.22 Score=46.54 Aligned_cols=33 Identities=9% Similarity=-0.178 Sum_probs=26.5
Q ss_pred cCccccchhhHHHHHHhcccchhhhhhhhhcCC
Q 047360 53 LGALRIPKSNLLSLHLHQQTQKAKSTEKLRMGG 85 (104)
Q Consensus 53 kgsvrt~k~~i~~l~~~~~~~~~d~v~~h~~g~ 85 (104)
+|+...-|.=|+++|.+||.|++|+|.||-...
T Consensus 437 YGTPeDLK~LVD~aH~~GI~VILDvV~NH~~~d 469 (872)
T PLN03244 437 YGTPDDFKRLVDEAHGLGLLVFLDIVHSYAAAD 469 (872)
T ss_pred cCCHHHHHHHHHHHHHCCCEEEEEecCccCCCc
Confidence 444444466699999999999999999998653
No 45
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=78.87 E-value=2.1 Score=34.48 Aligned_cols=66 Identities=14% Similarity=0.126 Sum_probs=39.9
Q ss_pred HHHHhhhhHHHHcCCCeEEcCCCCCC--CCCCCCCccccccC-CCCC--ccc-cCccccchhhHHHHHHhcccchhhh
Q 047360 6 NFLKKRIPDIANAGTTHVWLPPPSQH--AAPQEKKEKAKNRN-APIS--NFE-LGALRIPKSNLLSLHLHQQTQKAKS 77 (104)
Q Consensus 6 k~Lk~~apeLa~aGITaVWLPPpsKg--~s~~GY~pyDLyd~-~~lg--efd-kgsvrt~k~~i~~l~~~~~~~~~d~ 77 (104)
+.+++.+..|+++||++|.+--=..| ..+.-+.|.--|.. .... .|| + ..-|++.|+.||+|.|=+
T Consensus 19 ~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~DpL------~~~I~eaHkrGlevHAW~ 90 (311)
T PF02638_consen 19 EQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFDPL------EFMIEEAHKRGLEVHAWF 90 (311)
T ss_pred HHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCccHH------HHHHHHHHHcCCEEEEEE
Confidence 46888999999999999987533333 12333333211110 0000 022 1 334999999999999866
No 46
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=78.11 E-value=1.2 Score=32.63 Aligned_cols=62 Identities=8% Similarity=-0.034 Sum_probs=41.6
Q ss_pred HHHhhhhHHHHcCCCeEEcCCCCCCCC--CCCCCccccccCCCCCccccCccccchhhHHHHHHhcccchhhhhhh
Q 047360 7 FLKKRIPDIANAGTTHVWLPPPSQHAA--PQEKKEKAKNRNAPISNFELGALRIPKSNLLSLHLHQQTQKAKSTEK 80 (104)
Q Consensus 7 ~Lk~~apeLa~aGITaVWLPPpsKg~s--~~GY~pyDLyd~~~lgefdkgsvrt~k~~i~~l~~~~~~~~~d~v~~ 80 (104)
...+.+..|+++||+.|=||.++.... ..+| +.+...+..-+.-|..++++||.|++|.-..
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~------------~~~~~~~~~ld~~v~~a~~~gi~vild~h~~ 85 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGY------------NYDETYLARLDRIVDAAQAYGIYVILDLHNA 85 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTT------------SBTHHHHHHHHHHHHHHHHTT-EEEEEEEES
T ss_pred CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCc------------cccHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 678889999999999999998863321 1122 2222233333566999999999998776443
No 47
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=71.93 E-value=4.6 Score=34.58 Aligned_cols=67 Identities=13% Similarity=0.015 Sum_probs=47.5
Q ss_pred chhHHHHhhhhHHHHcCCCeEEcCCCCCCCCCCCCCccccccCCCCCccccCccccchhhHHHHHHhcccchhhhhhhh
Q 047360 3 GWYNFLKKRIPDIANAGTTHVWLPPPSQHAAPQEKKEKAKNRNAPISNFELGALRIPKSNLLSLHLHQQTQKAKSTEKL 81 (104)
Q Consensus 3 ~wWk~Lk~~apeLa~aGITaVWLPPpsKg~s~~GY~pyDLyd~~~lgefdkgsvrt~k~~i~~l~~~~~~~~~d~v~~h 81 (104)
.+|.+.++.+.-|+++|+++.=+.=.+--.-|.|.. |+++...|.-=+.-|++|.++||++.+ +|.|
T Consensus 64 D~Yhry~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~~----------~~~N~~gl~~Y~~lid~L~~~GI~P~V--TL~H 130 (476)
T PRK09589 64 DFYHRYKEDIALFAEMGFKCFRTSIAWTRIFPQGDE----------LEPNEEGLQFYDDLFDECLKQGIEPVV--TLSH 130 (476)
T ss_pred cHHHhhHHHHHHHHHcCCCEEEeccchhhcCcCCCC----------CCCCHHHHHHHHHHHHHHHHcCCEEEE--EecC
Confidence 589999999999999999998776665555666552 223322232224559999999999885 4444
No 48
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=71.27 E-value=3.8 Score=35.16 Aligned_cols=64 Identities=13% Similarity=0.040 Sum_probs=47.9
Q ss_pred chhHHHHhhhhHHHHcCCCeEEcCCCCCCCCCCCCCccccccCCCCCccccCccccchhhHHHHHHhcccchhh
Q 047360 3 GWYNFLKKRIPDIANAGTTHVWLPPPSQHAAPQEKKEKAKNRNAPISNFELGALRIPKSNLLSLHLHQQTQKAK 76 (104)
Q Consensus 3 ~wWk~Lk~~apeLa~aGITaVWLPPpsKg~s~~GY~pyDLyd~~~lgefdkgsvrt~k~~i~~l~~~~~~~~~d 76 (104)
.+|.+.++.+.-|+++|+++.=++-.+--.-|.|.. ++++...|.-=+.-|.+|.++||++.+.
T Consensus 68 D~Yhry~eDi~l~~~lG~~~yR~si~WsRi~P~g~~----------~~~n~~~~~~Y~~~i~~l~~~gi~p~Vt 131 (474)
T PRK09852 68 DFYHRYKEDIALMAEMGFKVFRTSIAWSRLFPQGDE----------LTPNQQGIAFYRSVFEECKKYGIEPLVT 131 (474)
T ss_pred chhhhhHHHHHHHHHcCCCeEEeeceeeeeeeCCCC----------CCCCHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 489999999999999999999888877776676542 2233333333345599999999999753
No 49
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=70.54 E-value=5.3 Score=34.25 Aligned_cols=63 Identities=13% Similarity=0.077 Sum_probs=46.4
Q ss_pred chhHHHHhhhhHHHHcCCCeEEcCCCCCCCCCCCCCccccccCCCCCccccCccccchhhHHHHHHhcccchh
Q 047360 3 GWYNFLKKRIPDIANAGTTHVWLPPPSQHAAPQEKKEKAKNRNAPISNFELGALRIPKSNLLSLHLHQQTQKA 75 (104)
Q Consensus 3 ~wWk~Lk~~apeLa~aGITaVWLPPpsKg~s~~GY~pyDLyd~~~lgefdkgsvrt~k~~i~~l~~~~~~~~~ 75 (104)
.+|.+.++.+.-|+++|+++.=+.=.+--.-|.|.. |+++...|.-=..-|++|.++||++.+
T Consensus 70 d~Yhry~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~~----------~~~N~~gl~~Y~~lId~L~~~GI~P~V 132 (478)
T PRK09593 70 DMYHHYKEDIALFAEMGFKTYRMSIAWTRIFPKGDE----------LEPNEAGLQFYEDIFKECHKYGIEPLV 132 (478)
T ss_pred chHHhhHHHHHHHHHcCCCEEEEecchhhcccCCCC----------CCCCHHHHHHHHHHHHHHHHcCCEEEE
Confidence 499999999999999999998877776656676652 223322232224449999999999885
No 50
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=70.34 E-value=4 Score=35.01 Aligned_cols=65 Identities=12% Similarity=0.058 Sum_probs=47.9
Q ss_pred chhHHHHhhhhHHHHcCCCeEEcCCCCCCCCCCCCCccccccCCCCCccccCccccchhhHHHHHHhcccchhhh
Q 047360 3 GWYNFLKKRIPDIANAGTTHVWLPPPSQHAAPQEKKEKAKNRNAPISNFELGALRIPKSNLLSLHLHQQTQKAKS 77 (104)
Q Consensus 3 ~wWk~Lk~~apeLa~aGITaVWLPPpsKg~s~~GY~pyDLyd~~~lgefdkgsvrt~k~~i~~l~~~~~~~~~d~ 77 (104)
.+|.+.++.+.-|+++|+++.=++=.+--.-|.|.. |+++...|.-=+.-|++|.++||++.+.+
T Consensus 66 D~Yhry~EDI~Lm~elG~~~yRfSIsWsRI~P~G~~----------~~~N~~gl~~Y~~lid~l~~~GI~P~vTL 130 (477)
T PRK15014 66 DFYGHYKEDIKLFAEMGFKCFRTSIAWTRIFPKGDE----------AQPNEEGLKFYDDMFDELLKYNIEPVITL 130 (477)
T ss_pred CcccccHHHHHHHHHcCCCEEEecccceeeccCCCC----------CCCCHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 589999999999999999998887777666666532 23333333332455999999999998654
No 51
>PF03537 Glyco_hydro_114: Glycoside-hydrolase family GH114; InterPro: IPR004352 Eighty-one archaeal-like genes, ranging in size from 4-20kb, are clustered in 15 regions of the Thermotoga maritima genome []. Conservation of gene order between T. maritima and Archaea in many of these regions suggests that lateral gene transfer may have occurred between thermophilic Eubacteria and Archaea []. One of the T. maritima sequences (hypothetical protein TM1410) shares similarity with Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1477 and with hypothetical protein DR0705 from Deinococcus radiodurans. The sequences are characterised by relatively variable N- and C-terminal domains, and a more conserved central domain. They share no similarity with any other known, functionally or structurally characterised proteins. ; PDB: 2AAM_F.
Probab=69.76 E-value=2.7 Score=27.45 Aligned_cols=44 Identities=14% Similarity=0.296 Sum_probs=19.0
Q ss_pred CeEEcCCCCCCC---------CCCCCCccccccCCCCCccccCccccchhhHHHHHHhcccchh
Q 047360 21 THVWLPPPSQHA---------APQEKKEKAKNRNAPISNFELGALRIPKSNLLSLHLHQQTQKA 75 (104)
Q Consensus 21 TaVWLPPpsKg~---------s~~GY~pyDLyd~~~lgefdkgsvrt~k~~i~~l~~~~~~~~~ 75 (104)
.++|-|++...- .+.+|..+++-- | .+.+++|..||..|..|++
T Consensus 2 ~~~~~p~~~~~w~~qL~~~~~~~~~~~v~~iD~------~-----~~~~~~I~~L~~~G~~vic 54 (74)
T PF03537_consen 2 SAIWPPAPGTTWQYQLGGPIDPDPDVDVVVIDL------F-----DFSKEEIARLKAQGKKVIC 54 (74)
T ss_dssp --------SS--EEE-SS-HHHTSS-SEEEE-S------B-----S--HHHHHHHHHTT-EEEE
T ss_pred cccccccCCCEEEEEeCCCcCCCCCCCEEEECC------c-----cCCHHHHHHHHHCCCEEEE
Confidence 357777777652 234554444322 1 1668999999999987764
No 52
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=68.83 E-value=5.5 Score=33.88 Aligned_cols=63 Identities=6% Similarity=0.052 Sum_probs=47.0
Q ss_pred chhHHHHhhhhHHHHcCCCeEEcCCCCCCCCCCCCCccccccCCCCCccccCccccchhhHHHHHHhcccchhh
Q 047360 3 GWYNFLKKRIPDIANAGTTHVWLPPPSQHAAPQEKKEKAKNRNAPISNFELGALRIPKSNLLSLHLHQQTQKAK 76 (104)
Q Consensus 3 ~wWk~Lk~~apeLa~aGITaVWLPPpsKg~s~~GY~pyDLyd~~~lgefdkgsvrt~k~~i~~l~~~~~~~~~d 76 (104)
.+|.+.++.+.-++++|+++.=+.=++--.-|.|. |+++...|.-=++-|++|.++||++.+-
T Consensus 51 d~Y~ry~eDi~L~~~lG~~~yRfSIsWsRI~P~G~-----------g~vN~~gl~~Y~~lid~l~~~GI~P~VT 113 (469)
T PRK13511 51 DFYHRYPEDLKLAEEFGVNGIRISIAWSRIFPDGY-----------GEVNPKGVEYYHRLFAECHKRHVEPFVT 113 (469)
T ss_pred chhhhhHHHHHHHHHhCCCEEEeeccHhhcCcCCC-----------CCcCHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 58999999999999999999877766666667663 2333333333245599999999999863
No 53
>PLN02998 beta-glucosidase
Probab=66.57 E-value=5.7 Score=34.39 Aligned_cols=66 Identities=14% Similarity=0.099 Sum_probs=47.1
Q ss_pred chhHHHHhhhhHHHHcCCCeEEcCCCCCCCCCCCCCccccccCCCCCccccCccccchhhHHHHHHhcccchhhhhhhh
Q 047360 3 GWYNFLKKRIPDIANAGTTHVWLPPPSQHAAPQEKKEKAKNRNAPISNFELGALRIPKSNLLSLHLHQQTQKAKSTEKL 81 (104)
Q Consensus 3 ~wWk~Lk~~apeLa~aGITaVWLPPpsKg~s~~GY~pyDLyd~~~lgefdkgsvrt~k~~i~~l~~~~~~~~~d~v~~h 81 (104)
++|.+.++.+.-++++|+++.=+.=.+--.-|.|- |+++...|.-=+.-|++|.++||++.+ +|.|
T Consensus 79 D~Yhry~EDi~lmk~lG~~~YRfSIsWsRI~P~G~-----------g~vN~~gl~~Y~~lid~L~~~GIeP~V--TL~H 144 (497)
T PLN02998 79 DQYHKYKEDVKLMADMGLEAYRFSISWSRLLPSGR-----------GPINPKGLQYYNNLIDELITHGIQPHV--TLHH 144 (497)
T ss_pred cHHHhhHHHHHHHHHcCCCeEEeeccHHhcCcCCC-----------CCcCHHHHHHHHHHHHHHHHcCCceEE--EecC
Confidence 58999999999999999998766555555556662 234433333334559999999999884 4444
No 54
>PLN02849 beta-glucosidase
Probab=64.94 E-value=6.4 Score=34.13 Aligned_cols=66 Identities=14% Similarity=0.106 Sum_probs=46.3
Q ss_pred chhHHHHhhhhHHHHcCCCeEEcCCCCCCCCCCCCCccccccCCCCCccccCccccchhhHHHHHHhcccchhhhhhhh
Q 047360 3 GWYNFLKKRIPDIANAGTTHVWLPPPSQHAAPQEKKEKAKNRNAPISNFELGALRIPKSNLLSLHLHQQTQKAKSTEKL 81 (104)
Q Consensus 3 ~wWk~Lk~~apeLa~aGITaVWLPPpsKg~s~~GY~pyDLyd~~~lgefdkgsvrt~k~~i~~l~~~~~~~~~d~v~~h 81 (104)
.+|.+.++.+.-|+++|+++.=+.=.+--.-|.|- |+++...|.-=+.-|++|.++||++.+ +|.|
T Consensus 76 D~YhrY~eDI~Lm~~lG~~aYRfSIsWsRI~P~G~-----------g~vN~~gl~fY~~lid~l~~~GI~P~V--TL~H 141 (503)
T PLN02849 76 DGYHKYKEDVKLMVETGLDAFRFSISWSRLIPNGR-----------GSVNPKGLQFYKNFIQELVKHGIEPHV--TLFH 141 (503)
T ss_pred cHHHhHHHHHHHHHHcCCCeEEEeccHHhcCcCCC-----------CCCCHHHHHHHHHHHHHHHHcCCeEEE--eecC
Confidence 58999999999999999998866555544555552 233333333334559999999999875 4444
No 55
>PLN02814 beta-glucosidase
Probab=64.92 E-value=7 Score=33.93 Aligned_cols=66 Identities=15% Similarity=0.097 Sum_probs=47.5
Q ss_pred chhHHHHhhhhHHHHcCCCeEEcCCCCCCCCCCCCCccccccCCCCCccccCccccchhhHHHHHHhcccchhhhhhhh
Q 047360 3 GWYNFLKKRIPDIANAGTTHVWLPPPSQHAAPQEKKEKAKNRNAPISNFELGALRIPKSNLLSLHLHQQTQKAKSTEKL 81 (104)
Q Consensus 3 ~wWk~Lk~~apeLa~aGITaVWLPPpsKg~s~~GY~pyDLyd~~~lgefdkgsvrt~k~~i~~l~~~~~~~~~d~v~~h 81 (104)
.+|.+.++.+.-++++|+++.=+.=.+--.-|.|- |+++...|.-=++-|++|.++||++.+ +|.|
T Consensus 74 D~Yhry~EDI~L~k~lG~~ayRfSIsWsRI~P~G~-----------g~~N~~Gl~fY~~lId~l~~~GI~P~V--TL~H 139 (504)
T PLN02814 74 DGYHKYKEDVKLMAEMGLESFRFSISWSRLIPNGR-----------GLINPKGLLFYKNLIKELRSHGIEPHV--TLYH 139 (504)
T ss_pred cHHHhhHHHHHHHHHcCCCEEEEeccHhhcCcCCC-----------CCCCHHHHHHHHHHHHHHHHcCCceEE--EecC
Confidence 58999999999999999999876655555566662 234433333335559999999999874 4444
No 56
>KOG2212 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=64.84 E-value=12 Score=33.12 Aligned_cols=70 Identities=13% Similarity=0.075 Sum_probs=48.1
Q ss_pred hHHHHcCCCeEEcCCCCCCCCCCC--CCccccccCCCCCccccCccccc---hhh----HHHHHHhcccchhhhhhhhhc
Q 047360 13 PDIANAGTTHVWLPPPSQHAAPQE--KKEKAKNRNAPISNFELGALRIP---KSN----LLSLHLHQQTQKAKSTEKLRM 83 (104)
Q Consensus 13 peLa~aGITaVWLPPpsKg~s~~G--Y~pyDLyd~~~lgefdkgsvrt~---k~~----i~~l~~~~~~~~~d~v~~h~~ 83 (104)
.-|.-.|+-.|=..||......-+ |-+..-|. --.+ -++|+ .+| ++.+.+-|+..|+|+|+||-.
T Consensus 48 ~FL~p~G~~gVQVSP~nEn~~~~~~~rPWWeRYQ-----PvSY-KL~tRSGNE~eF~dMV~RCN~VGVRiyVDvv~NHM~ 121 (504)
T KOG2212|consen 48 RFLAPKGFGGVQVSPPNENVAIHNPFRPWWERYQ-----PVSY-KLCTRSGNEDEFRDMVTRCNNVGVRIYVDAVINHMC 121 (504)
T ss_pred hhcCcCCcceeeecCcchhhhhcCCCCCceeecc-----cceE-EeeccCCCHHHHHHHHHHhhccceEEEehhhhhhhc
Confidence 346678999999999998753333 55544444 2221 14455 222 899999999999999999999
Q ss_pred CCCCC
Q 047360 84 GGSHS 88 (104)
Q Consensus 84 g~d~~ 88 (104)
|-+-+
T Consensus 122 g~~~~ 126 (504)
T KOG2212|consen 122 GNAVS 126 (504)
T ss_pred ccccc
Confidence 84443
No 57
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=64.49 E-value=13 Score=26.78 Aligned_cols=59 Identities=5% Similarity=-0.006 Sum_probs=34.9
Q ss_pred HhhhhHHHHcCCCeEEcCCCCCCCCCCCCCcccccc-CCCCCccccCccccchhhHHHHHHhcccchh
Q 047360 9 KKRIPDIANAGTTHVWLPPPSQHAAPQEKKEKAKNR-NAPISNFELGALRIPKSNLLSLHLHQQTQKA 75 (104)
Q Consensus 9 k~~apeLa~aGITaVWLPPpsKg~s~~GY~pyDLyd-~~~lgefdkgsvrt~k~~i~~l~~~~~~~~~ 75 (104)
++-+..|+++|+++|=+---|.+. .-|-|..+.- ...|+ +| ..++.|+++|+.||.|.|
T Consensus 3 ~~~~~~lk~~~v~si~i~a~~h~g--~ayYPt~~~~~hp~L~-~D-----llge~v~a~h~~Girv~a 62 (132)
T PF14871_consen 3 EQFVDTLKEAHVNSITIFAKCHGG--YAYYPTKVGPRHPGLK-RD-----LLGEQVEACHERGIRVPA 62 (132)
T ss_pred HHHHHHHHHhCCCEEEEEcccccE--EEEccCCCCcCCCCCC-cC-----HHHHHHHHHHHCCCEEEE
Confidence 345778999999999875443332 2233333311 11111 22 115679999999999865
No 58
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=61.10 E-value=10 Score=32.42 Aligned_cols=75 Identities=11% Similarity=0.066 Sum_probs=51.5
Q ss_pred chhHHHHhhhhHHHHcCCCeEEcCCCCCCCCCCCCCccccccCCCCCccccCccccchhhHHHHHHhcccchhhhhhhh-
Q 047360 3 GWYNFLKKRIPDIANAGTTHVWLPPPSQHAAPQEKKEKAKNRNAPISNFELGALRIPKSNLLSLHLHQQTQKAKSTEKL- 81 (104)
Q Consensus 3 ~wWk~Lk~~apeLa~aGITaVWLPPpsKg~s~~GY~pyDLyd~~~lgefdkgsvrt~k~~i~~l~~~~~~~~~d~v~~h- 81 (104)
.+|.+.++.+.-|+++|+++.=+.=.+--.-|.|. |+++...|.-=++-|++|.++||++.+ +|.|
T Consensus 50 d~yhry~eDi~L~~~lG~~~yRfSIsWsRI~P~g~-----------~~~N~~gl~~Y~~lid~l~~~GI~P~V--TL~H~ 116 (467)
T TIGR01233 50 DFYHKYPVDLELAEEYGVNGIRISIAWSRIFPTGY-----------GEVNEKGVEFYHKLFAECHKRHVEPFV--TLHHF 116 (467)
T ss_pred chhhhHHHHHHHHHHcCCCEEEEecchhhccCCCC-----------CCcCHHHHHHHHHHHHHHHHcCCEEEE--eccCC
Confidence 58999999999999999998876655555566653 233333333335559999999999874 4444
Q ss_pred -------hcCCCCCCc
Q 047360 82 -------RMGGSHSRE 90 (104)
Q Consensus 82 -------~~g~d~~~~ 90 (104)
..||=.+|+
T Consensus 117 dlP~~L~~~GGW~n~~ 132 (467)
T TIGR01233 117 DTPEALHSNGDFLNRE 132 (467)
T ss_pred CCcHHHHHcCCCCCHH
Confidence 236665554
No 59
>TIGR03560 F420_Rv1855c probable F420-dependent oxidoreductase, Rv1855c family. Coenzyme F420 has a limited phylogenetic distribution, including methanogenic archaea, Mycobacterium tuberculosis and related species, Colwellia psychrerythraea 34H, Rhodopseudomonas palustris HaA2, and others. Partial phylogenetic profiling identifies protein subfamilies, within the larger family called luciferase-like monooxygenanases (pfam00296), that appear only in F420-positive genomes and are likely to be F420-dependent. This model describes one such subfamily, exemplified by Rv1855c from Mycobacterium tuberculosis.
Probab=59.17 E-value=10 Score=28.79 Aligned_cols=24 Identities=17% Similarity=0.134 Sum_probs=21.4
Q ss_pred hhHHHHhhhhHHHHcCCCeEEcCC
Q 047360 4 WYNFLKKRIPDIANAGTTHVWLPP 27 (104)
Q Consensus 4 wWk~Lk~~apeLa~aGITaVWLPP 27 (104)
-|+.+.+.+...-++||+.||+|-
T Consensus 11 ~~~~~~~~a~~AE~~Gfd~vw~~e 34 (227)
T TIGR03560 11 LYPDLLAVARAAEDAGFDALFRSD 34 (227)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEch
Confidence 478889999999999999999983
No 60
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=56.44 E-value=18 Score=28.28 Aligned_cols=58 Identities=12% Similarity=-0.013 Sum_probs=40.4
Q ss_pred HHHHhhhhHHHHcC--CCeEEcCCCCCCCCCCCCCccccccCCCCCccc--cCccccchhhHHHHHHhcccchhh
Q 047360 6 NFLKKRIPDIANAG--TTHVWLPPPSQHAAPQEKKEKAKNRNAPISNFE--LGALRIPKSNLLSLHLHQQTQKAK 76 (104)
Q Consensus 6 k~Lk~~apeLa~aG--ITaVWLPPpsKg~s~~GY~pyDLyd~~~lgefd--kgsvrt~k~~i~~l~~~~~~~~~d 76 (104)
..+.+.|..+++.| ++.|||-.-+.. +|. .|.|. ....+-+|.=|+.||++|+.+.+-
T Consensus 24 ~~v~~~~~~~~~~~iP~d~~~lD~~w~~----~~~---------~~~f~~d~~~FPd~~~~i~~l~~~G~~~~~~ 85 (308)
T cd06593 24 EEVNEFADGMRERNLPCDVIHLDCFWMK----EFQ---------WCDFEFDPDRFPDPEGMLSRLKEKGFKVCLW 85 (308)
T ss_pred HHHHHHHHHHHHcCCCeeEEEEeccccc----CCc---------ceeeEECcccCCCHHHHHHHHHHCCCeEEEE
Confidence 46788999999999 677888655541 111 23555 444555577799999999987653
No 61
>PLN02660 pantoate--beta-alanine ligase
Probab=54.44 E-value=15 Score=30.25 Aligned_cols=53 Identities=11% Similarity=0.134 Sum_probs=36.0
Q ss_pred HHHhhhhHHHHcCCCeEEcCC------CCCCCCCCCCCc--------cccccCCCCCccc-cCccccc
Q 047360 7 FLKKRIPDIANAGTTHVWLPP------PSQHAAPQEKKE--------KAKNRNAPISNFE-LGALRIP 59 (104)
Q Consensus 7 ~Lk~~apeLa~aGITaVWLPP------psKg~s~~GY~p--------yDLyd~~~lgefd-kgsvrt~ 59 (104)
.+.+++.-|+++||+.||.|- +++...|.|+.. .-|---+|=|-|+ -.||-+|
T Consensus 73 tle~d~~ll~~~GVD~vf~P~~~emY~~~~~~~p~~~~~~v~~~~l~~~leG~~RPghF~GV~TVV~K 140 (284)
T PLN02660 73 DFDGDLRKLAALGVDAVFNPHDLYVYVSCLEEGGAGHETWVRVERLEKGLCGKSRPVFFRGVATIVTK 140 (284)
T ss_pred CHHHHHHHHHHcCCCEEECCChHHhcccccccCCCCcceEEeccccccccCCCCCCcccccHHHHHHH
Confidence 378899999999999999993 333333555432 1222345777788 7788887
No 62
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=52.43 E-value=6 Score=33.12 Aligned_cols=63 Identities=11% Similarity=0.034 Sum_probs=42.6
Q ss_pred chhHHHHhhhhHHHHcCCCeEEcCCCCCCCCCCCCCccccccCCCCCccccCccccchhhHHHHHHhcccchh
Q 047360 3 GWYNFLKKRIPDIANAGTTHVWLPPPSQHAAPQEKKEKAKNRNAPISNFELGALRIPKSNLLSLHLHQQTQKA 75 (104)
Q Consensus 3 ~wWk~Lk~~apeLa~aGITaVWLPPpsKg~s~~GY~pyDLyd~~~lgefdkgsvrt~k~~i~~l~~~~~~~~~ 75 (104)
++|.+.++.+.-|+++|+++.=+.-.+--..|.| .-|.++...|.-=++-|++|.++||++.+
T Consensus 55 d~y~~y~eDi~l~~~lg~~~yRfsi~W~Ri~P~g----------~~g~~n~~~~~~Y~~~i~~l~~~gi~P~v 117 (455)
T PF00232_consen 55 DHYHRYKEDIALMKELGVNAYRFSISWSRIFPDG----------FEGKVNEEGLDFYRDLIDELLENGIEPIV 117 (455)
T ss_dssp GHHHHHHHHHHHHHHHT-SEEEEE--HHHHSTTS----------SSSSS-HHHHHHHHHHHHHHHHTT-EEEE
T ss_pred cchhhhhHHHHHHHhhccceeeeecchhheeecc----------cccccCHhHhhhhHHHHHHHHhhccceee
Confidence 6899999999999999999987665554445555 12344433343335559999999999986
No 63
>KOG3904 consensus Predicted hydrolase RP2 (NUDIX/MutT superfamily) [Function unknown]
Probab=51.99 E-value=3.9 Score=32.82 Aligned_cols=16 Identities=25% Similarity=0.231 Sum_probs=11.8
Q ss_pred cccCCCCCccc-cCccc
Q 047360 42 KNRNAPISNFE-LGALR 57 (104)
Q Consensus 42 Lyd~~~lgefd-kgsvr 57 (104)
+|++||+|+|- .-.++
T Consensus 155 ~yelsr~~~f~~~~~l~ 171 (209)
T KOG3904|consen 155 FYELSRVGVFISLDNLR 171 (209)
T ss_pred hhhHhHhhhhhhHHhhc
Confidence 78899999996 44443
No 64
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=49.07 E-value=30 Score=27.39 Aligned_cols=55 Identities=13% Similarity=0.104 Sum_probs=37.2
Q ss_pred HHHHhhhhHHHHcCC--CeEEcCCCCCCCCCCCCCccccccCCCCCccc--cCccccchhhHHHHHHhcccchh
Q 047360 6 NFLKKRIPDIANAGT--THVWLPPPSQHAAPQEKKEKAKNRNAPISNFE--LGALRIPKSNLLSLHLHQQTQKA 75 (104)
Q Consensus 6 k~Lk~~apeLa~aGI--TaVWLPPpsKg~s~~GY~pyDLyd~~~lgefd--kgsvrt~k~~i~~l~~~~~~~~~ 75 (104)
+.|.+.|..+++.|| +.|||- .||+. ..|.|. ....+-+|+-|+.||+.|+.+.+
T Consensus 30 ~~v~~~~~~~~~~~iP~d~i~iD--------~~w~~-------~~g~f~~d~~~FPdp~~mi~~l~~~G~k~~l 88 (303)
T cd06592 30 ETVLNYAQEIIDNGFPNGQIEID--------DNWET-------CYGDFDFDPTKFPDPKGMIDQLHDLGFRVTL 88 (303)
T ss_pred HHHHHHHHHHHHcCCCCCeEEeC--------CCccc-------cCCccccChhhCCCHHHHHHHHHHCCCeEEE
Confidence 357888999999996 466654 34432 145555 44445557779999999997643
No 65
>TIGR03555 F420_mer 5,10-methylenetetrahydromethanopterin reductase. Members of this protein family are 5,10-methylenetetrahydromethanopterin reductase, an F420-dependent enzyme of methanogenesis. It is restricted to the Archaea.
Probab=45.67 E-value=22 Score=28.16 Aligned_cols=24 Identities=8% Similarity=0.170 Sum_probs=20.9
Q ss_pred hHHHHhhhhHHHHcCCCeEEcCCC
Q 047360 5 YNFLKKRIPDIANAGTTHVWLPPP 28 (104)
Q Consensus 5 Wk~Lk~~apeLa~aGITaVWLPPp 28 (104)
|+.+.+.+...-++||+.||++--
T Consensus 11 ~~~~~~~a~~AE~~Gfd~~w~~eh 34 (325)
T TIGR03555 11 ITKIAYYVKLAEDNGFEYAWITDH 34 (325)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccc
Confidence 778888888889999999999874
No 66
>TIGR03854 F420_MSMEG_3544 probable F420-dependent oxidoreductase, MSMEG_3544 family. Coenzyme F420 has a limited phylogenetic distribution, including methanogenic archaea, Mycobacterium tuberculosis and related species, Colwellia psychrerythraea 34H, Rhodopseudomonas palustris HaA2, and others. Partial phylogenetic profiling identifies protein subfamilies, within the larger family called luciferase-like monooxygenanases (pfam00296), that appear only in F420-positive genomes and are likely to be F420-dependent. This model describes a small family, closely related to other such families in the putative F420-binding region, exemplified by MSMEG_3544 in Mycobacterium smegmatis.
Probab=45.07 E-value=26 Score=27.67 Aligned_cols=25 Identities=28% Similarity=0.468 Sum_probs=21.7
Q ss_pred hHHHHhhhhHHHHcCCCeEEcCCCC
Q 047360 5 YNFLKKRIPDIANAGTTHVWLPPPS 29 (104)
Q Consensus 5 Wk~Lk~~apeLa~aGITaVWLPPps 29 (104)
++.+.+++..+.++|||+|.|-|+.
T Consensus 246 ~~~v~~~l~~~~~aG~~~~~l~~~~ 270 (290)
T TIGR03854 246 WAQLHRRIDAYLDAGLTKFVIRPAG 270 (290)
T ss_pred HHHHHHHHHHHHHcCCcEEEEcCCC
Confidence 5788999999999999999996643
No 67
>cd01094 Alkanesulfonate_monoxygenase Alkanesulfonate monoxygenase is the monoxygenase of a two-component system that catalyzes the conversion of alkanesulfonates to the corresponding aldehyde and sulfite. Alkanesulfonate monoxygenase (SsuD) has an absolute requirement for reduced flavin mononucleotide (FMNH2), which is provided by the NADPH-dependent FMN oxidoreductase (SsuE).
Probab=43.24 E-value=27 Score=26.37 Aligned_cols=23 Identities=9% Similarity=0.226 Sum_probs=19.5
Q ss_pred hHHHHhhhhHHHHcCCCeEEcCC
Q 047360 5 YNFLKKRIPDIANAGTTHVWLPP 27 (104)
Q Consensus 5 Wk~Lk~~apeLa~aGITaVWLPP 27 (104)
|..+-+.+...-++||+.||++.
T Consensus 27 ~~~~~~~a~~Ae~~Gfd~~w~~e 49 (244)
T cd01094 27 FEYNRQIAQAAEELGFDGALSPT 49 (244)
T ss_pred HHHHHHHHHHHHHCCCCEEEccC
Confidence 67777778888889999999985
No 68
>TIGR03565 alk_sulf_monoox alkanesulfonate monooxygenase, FMNH(2)-dependent. Members of this protein family are monooxygenases that catalyze desulfonation of aliphatic sulfonates such as methane sulfonate. This enzyme uses reduced FMN, although various others members of the same luciferase-like monooxygenase family (pfam00296) are F420-dependent enzymes.
Probab=42.86 E-value=26 Score=28.17 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=20.8
Q ss_pred hHHHHhhhhHHHHcCCCeEEcCC
Q 047360 5 YNFLKKRIPDIANAGTTHVWLPP 27 (104)
Q Consensus 5 Wk~Lk~~apeLa~aGITaVWLPP 27 (104)
|..+.+.|...-++||+.+|+|.
T Consensus 26 ~~~~~~~a~~AE~~Gfd~~~~~~ 48 (346)
T TIGR03565 26 HGYLKQIAQAADRLGYTGVLLPT 48 (346)
T ss_pred HHHHHHHHHHHHHcCCCEEEecC
Confidence 88888889989999999999986
No 69
>TIGR03856 F420_MSMEG_2906 probable F420-dependent oxidoreductase, MSMEG_2906 family. This model describes a small family of enzymes in the bacterial luciferase-like monooxygenase family, which includes F420-dependent enzymes such as N5,N10-methylenetetrahydromethanopterin reductase as well as FMN-dependent enzymes. All members of this family are from species that produce coenzyme F420; SIMBAL analysis suggests that members of this family bind F420 rather than FMN.
Probab=42.06 E-value=28 Score=27.17 Aligned_cols=22 Identities=9% Similarity=0.202 Sum_probs=19.9
Q ss_pred hHHHHhhhhHHHHcCCCeEEcC
Q 047360 5 YNFLKKRIPDIANAGTTHVWLP 26 (104)
Q Consensus 5 Wk~Lk~~apeLa~aGITaVWLP 26 (104)
|..+.+.+...-++||+.||++
T Consensus 15 ~~~~~~~a~~AE~~Gfd~vw~~ 36 (249)
T TIGR03856 15 YRTWRDAVRRAEDLGVDVIFNW 36 (249)
T ss_pred HHHHHHHHHHHHHcCCCEEEEc
Confidence 7888999999999999999983
No 70
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=40.81 E-value=15 Score=29.42 Aligned_cols=60 Identities=8% Similarity=-0.042 Sum_probs=33.8
Q ss_pred HhhhhHHHHcCCCeEEcCCCCCCCCCCCCCccccccCCCCCccccC--ccccchhhHHHHHHhcccchhhhhhh
Q 047360 9 KKRIPDIANAGTTHVWLPPPSQHAAPQEKKEKAKNRNAPISNFELG--ALRIPKSNLLSLHLHQQTQKAKSTEK 80 (104)
Q Consensus 9 k~~apeLa~aGITaVWLPPpsKg~s~~GY~pyDLyd~~~lgefdkg--svrt~k~~i~~l~~~~~~~~~d~v~~ 80 (104)
.+.+..|+++|++.+. +.+.+ ...-.++. ..-++ +.....+.|+.+|+.|+.+-+=++..
T Consensus 141 ~e~l~~LkeAGl~~i~------~~~~E-~~~~~v~~-----~i~~~~~~~~~~~~~i~~a~~~Gi~v~s~~i~G 202 (343)
T TIGR03551 141 EEALKRLKEAGLDSMP------GTAAE-ILDDEVRK-----VICPDKLSTAEWIEIIKTAHKLGIPTTATIMYG 202 (343)
T ss_pred HHHHHHHHHhCccccc------Ccchh-hcCHHHHH-----hcCCCCCCHHHHHHHHHHHHHcCCcccceEEEe
Confidence 5678889999999885 11111 22222333 11111 22233555888888888876655544
No 71
>PRK10426 alpha-glucosidase; Provisional
Probab=40.43 E-value=49 Score=29.54 Aligned_cols=65 Identities=11% Similarity=0.121 Sum_probs=41.0
Q ss_pred HHHHhhhhHHHHcC--CCeEEcCCCCCCCCCCCCCccccccCCCCCccccCccccchhhHHHHHHhcccchh
Q 047360 6 NFLKKRIPDIANAG--TTHVWLPPPSQHAAPQEKKEKAKNRNAPISNFELGALRIPKSNLLSLHLHQQTQKA 75 (104)
Q Consensus 6 k~Lk~~apeLa~aG--ITaVWLPPpsKg~s~~GY~pyDLyd~~~lgefdkgsvrt~k~~i~~l~~~~~~~~~ 75 (104)
+.+.+.+..+.+.| +++|||- -+.+.....|.-+..++ . +||+...+.+|+-|+.||+.|+.+.+
T Consensus 221 ~~v~~v~~~~r~~~IP~d~i~ld-dw~~~~~~~~g~~~~~~---~-~~d~~~FPdp~~mi~~L~~~G~k~v~ 287 (635)
T PRK10426 221 EVVQKKLDTMRNAGVKVNGIWAQ-DWSGIRMTSFGKRLMWN---W-KWDSERYPQLDSRIKQLNEEGIQFLG 287 (635)
T ss_pred HHHHHHHHHHHHcCCCeeEEEEe-ccccccccccccccccc---c-eEChhhCCCHHHHHHHHHHCCCEEEE
Confidence 46888999999999 4899994 23221111222111112 0 34566666778889999999987654
No 72
>PF00296 Bac_luciferase: Luciferase-like monooxygenase; InterPro: IPR011251 Bacterial luciferase is a flavin monooxygenase that catalyses the oxidation of long-chain aldehydes and releases energy in the form of visible light, and which uses flavin as a substrate rather than a cofactor []. Bacterial luciferase is an alpha/beta (LuxA/LuxB) heterodimer, where each individual subunit folds into a single TIM (beta/alpha)8-barrel domain. There are structural similarities between bacterial luciferase and nonfluorescent flavoproteins (LuxF, FP390), alkanesulphonate monooxygenase (SsuD), and coenzyme F420-dependent terahydromethanopterin reductase, which make up clearly related families with somewhat different folds [, , ]. More information about these proteins can be found at Protein of the Month: Luciferase [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0055114 oxidation-reduction process; PDB: 2I7G_B 1NFP_A 1TVL_A 1YW1_A 1M41_B 1NQK_A 2B81_A 3RAO_A 1LUC_B 3FGC_B ....
Probab=39.83 E-value=28 Score=26.33 Aligned_cols=27 Identities=15% Similarity=0.102 Sum_probs=21.6
Q ss_pred hhHHHHhhhhHHHHcCCCeEEcCCCCC
Q 047360 4 WYNFLKKRIPDIANAGTTHVWLPPPSQ 30 (104)
Q Consensus 4 wWk~Lk~~apeLa~aGITaVWLPPpsK 30 (104)
-++.+.+.+...-++||+.||++.-.-
T Consensus 21 ~~~~~~~~a~~ae~~Gfd~~w~~eh~~ 47 (307)
T PF00296_consen 21 PLDELVELAQLAEELGFDSVWVSEHHF 47 (307)
T ss_dssp HHHHHHHHHHHHHHTT-SEEEEE-SSS
T ss_pred CHHHHHHHHHHHHHcCCCEEEecccCC
Confidence 578889999999999999999986554
No 73
>PRK06256 biotin synthase; Validated
Probab=37.75 E-value=26 Score=27.67 Aligned_cols=60 Identities=5% Similarity=-0.051 Sum_probs=35.6
Q ss_pred HhhhhHHHHcCCCeEEcCCCCCCCCCCCCCccccccCCCCCccccCccccchhhHHHHHHhcccchhhhhhhh
Q 047360 9 KKRIPDIANAGTTHVWLPPPSQHAAPQEKKEKAKNRNAPISNFELGALRIPKSNLLSLHLHQQTQKAKSTEKL 81 (104)
Q Consensus 9 k~~apeLa~aGITaVWLPPpsKg~s~~GY~pyDLyd~~~lgefdkgsvrt~k~~i~~l~~~~~~~~~d~v~~h 81 (104)
.+.+..|+++|++.|.+..=+ + ..+|+. +.- ..+.....+.|+.+|+.|+.+.+.++..+
T Consensus 152 ~e~l~~LkeaG~~~v~~~lEt-s--------~~~~~~--i~~--~~t~~~~i~~i~~a~~~Gi~v~~~~I~Gl 211 (336)
T PRK06256 152 EEQAERLKEAGVDRYNHNLET-S--------RSYFPN--VVT--THTYEDRIDTCEMVKAAGIEPCSGGIIGM 211 (336)
T ss_pred HHHHHHHHHhCCCEEecCCcc-C--------HHHHhh--cCC--CCCHHHHHHHHHHHHHcCCeeccCeEEeC
Confidence 356677888888888764322 1 123331 100 11222224459999999999988887765
No 74
>cd00347 Flavin_utilizing_monoxygenases Flavin-utilizing monoxygenases
Probab=36.62 E-value=19 Score=21.10 Aligned_cols=23 Identities=13% Similarity=0.215 Sum_probs=19.6
Q ss_pred hhHHHHhhhhHHHHcCCCeEEcC
Q 047360 4 WYNFLKKRIPDIANAGTTHVWLP 26 (104)
Q Consensus 4 wWk~Lk~~apeLa~aGITaVWLP 26 (104)
-|+.+.+.+...-+.||+.+|++
T Consensus 20 ~~~~~~~~a~~ae~~G~~~~~~~ 42 (90)
T cd00347 20 DLEYLVELARLAERLGFDAAWVA 42 (90)
T ss_pred HHHHHHHHHHHHHHcCchhhHHH
Confidence 47778888888888999999998
No 75
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=36.44 E-value=79 Score=25.23 Aligned_cols=59 Identities=10% Similarity=0.032 Sum_probs=40.3
Q ss_pred HHHHhhhhHHHHcCC--CeEEcCCCCCCCCCCCCCccccccCCCCC--ccccCccccchhhHHHHHHhcccchh
Q 047360 6 NFLKKRIPDIANAGT--THVWLPPPSQHAAPQEKKEKAKNRNAPIS--NFELGALRIPKSNLLSLHLHQQTQKA 75 (104)
Q Consensus 6 k~Lk~~apeLa~aGI--TaVWLPPpsKg~s~~GY~pyDLyd~~~lg--efdkgsvrt~k~~i~~l~~~~~~~~~ 75 (104)
+.+.+.|..+.+.|| +.|||-+-+... |+ .... +||....+.+++=|+.||++|+.+.+
T Consensus 29 ~~v~~~~~~~r~~~iP~d~i~ld~~~~~~----~~-------~~~~~f~~d~~~FPdp~~mi~~L~~~g~k~~~ 91 (317)
T cd06599 29 EALLEFIDKCREHDIPCDSFHLSSGYTSI----EG-------GKRYVFNWNKDRFPDPAAFVAKFHERGIRLAP 91 (317)
T ss_pred HHHHHHHHHHHHcCCCeeEEEEecccccc----CC-------CceeeeecCcccCCCHHHHHHHHHHCCCEEEE
Confidence 578888999999997 889986533221 00 0112 34455666668779999999998865
No 76
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=35.81 E-value=40 Score=23.23 Aligned_cols=22 Identities=27% Similarity=0.534 Sum_probs=17.0
Q ss_pred HHHhhhhHHHHcCCCeEEcCCC
Q 047360 7 FLKKRIPDIANAGTTHVWLPPP 28 (104)
Q Consensus 7 ~Lk~~apeLa~aGITaVWLPPp 28 (104)
.+-+-++++.++|+.+|||-|.
T Consensus 67 ~~~~~v~~~~~~g~~~v~~~~g 88 (116)
T PF13380_consen 67 KVPEIVDEAAALGVKAVWLQPG 88 (116)
T ss_dssp HHHHHHHHHHHHT-SEEEE-TT
T ss_pred HHHHHHHHHHHcCCCEEEEEcc
Confidence 4556788999999999999987
No 77
>TIGR00018 panC pantoate--beta-alanine ligase. This family is pantoate--beta-alanine ligase, the last enzyme of pantothenate biosynthesis.
Probab=35.53 E-value=30 Score=28.30 Aligned_cols=52 Identities=12% Similarity=0.227 Sum_probs=35.9
Q ss_pred HHHhhhhHHHHcCCCeEEcCCCCCCCCCCCCCc-----------cccccCCCCCccc-cCccccc
Q 047360 7 FLKKRIPDIANAGTTHVWLPPPSQHAAPQEKKE-----------KAKNRNAPISNFE-LGALRIP 59 (104)
Q Consensus 7 ~Lk~~apeLa~aGITaVWLPPpsKg~s~~GY~p-----------yDLyd~~~lgefd-kgsvrt~ 59 (104)
.+++++.-|.++|++.|++|.+.. +.|.||.. .-|---+|=|-|+ -.||-+|
T Consensus 74 tle~d~~ll~~~GVD~vf~P~~~e-mYP~~~~~~t~v~~~~~l~~~leG~~RPghF~GV~TVV~K 137 (282)
T TIGR00018 74 TLEEDCALLEKLGVDVVFAPSVHE-MYPNGTEQHTTVDVPLGLSEVLEGASRPGHFRGVATIVTK 137 (282)
T ss_pred CHHHHHHHHHHcCCCEEECCCHHH-cCCCCCCcceEEecCcccccccCCCCCCccccchHHHHHH
Confidence 367889999999999999986433 55665421 1122245777888 7888777
No 78
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=35.35 E-value=35 Score=24.49 Aligned_cols=65 Identities=17% Similarity=0.266 Sum_probs=39.7
Q ss_pred hhHHHHhhhhHHHHcCCCeEEcCCCCCCC-----------CCCCCCccccccCCCCCccc----cCccccchhhHHHHHH
Q 047360 4 WYNFLKKRIPDIANAGTTHVWLPPPSQHA-----------APQEKKEKAKNRNAPISNFE----LGALRIPKSNLLSLHL 68 (104)
Q Consensus 4 wWk~Lk~~apeLa~aGITaVWLPPpsKg~-----------s~~GY~pyDLyd~~~lgefd----kgsvrt~k~~i~~l~~ 68 (104)
-|..|.+.+|.|.++||+.+| |+-.+.. ...+=...=.+.+..+-.|| .|-.+.-.+|+.+|=+
T Consensus 16 a~~FL~~~~~~L~~~Gi~V~l-P~~w~~~~~~~l~l~~~~~~~~~~~~~~lgl~~l~~f~W~lalGd~~Ls~eEf~~L~~ 94 (141)
T PF12419_consen 16 AYDFLTEAAPRLRAAGIGVLL-PSWWKKVRRPRLRLRAKATSPGGSSQSFLGLDQLLDFDWELALGDEELSEEEFEQLVE 94 (141)
T ss_pred HHHHHHHHHHHHHHCCCeEEc-CHHHhhccCCCcEEEEEeccCCCCCCCccChHHHhcceEEEEECCEECCHHHHHHHHH
Confidence 478899999999999998654 7655321 11111223334444455677 6666666666666544
Q ss_pred h
Q 047360 69 H 69 (104)
Q Consensus 69 ~ 69 (104)
.
T Consensus 95 ~ 95 (141)
T PF12419_consen 95 Q 95 (141)
T ss_pred c
Confidence 4
No 79
>TIGR03857 F420_MSMEG_2249 probable F420-dependent oxidoreductase, MSMEG_2249 family. Coenzyme F420 has a limited phylogenetic distribution, including methanogenic archaea, Mycobacterium tuberculosis and related species, Colwellia psychrerythraea 34H, Rhodopseudomonas palustris HaA2, and others. Partial phylogenetic profiling identifies protein subfamilies, within the larger family called luciferase-like monooxygenanases (pfam00296), that appear only in F420-positive genomes and are likely to be F420-dependent. This model describes a distinctive subfamily, found only in F420-biosynthesizing members of the Actinobacteria of the bacterial luciferase-like monooxygenase (LLM) superfamily.
Probab=35.21 E-value=40 Score=27.17 Aligned_cols=24 Identities=13% Similarity=0.022 Sum_probs=20.2
Q ss_pred hHHHHhhhhHHHHcCCCeEEcCCC
Q 047360 5 YNFLKKRIPDIANAGTTHVWLPPP 28 (104)
Q Consensus 5 Wk~Lk~~apeLa~aGITaVWLPPp 28 (104)
...+.+.+...-++||++||++--
T Consensus 13 ~~~~~~~a~~AE~~Gfd~vw~~E~ 36 (329)
T TIGR03857 13 PAQAIDEARAAERLGFGTVYLSER 36 (329)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccc
Confidence 456777888889999999999974
No 80
>PRK00719 alkanesulfonate monooxygenase; Provisional
Probab=34.34 E-value=42 Score=27.51 Aligned_cols=24 Identities=21% Similarity=0.257 Sum_probs=21.4
Q ss_pred hhHHHHhhhhHHHHcCCCeEEcCC
Q 047360 4 WYNFLKKRIPDIANAGTTHVWLPP 27 (104)
Q Consensus 4 wWk~Lk~~apeLa~aGITaVWLPP 27 (104)
.|..+.+.+...-++||+.||+|.
T Consensus 26 ~~~~~~~~a~~AE~~Gfd~~~~~~ 49 (378)
T PRK00719 26 DHGYLQQIAQAADRLGYTGVLIPT 49 (378)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCC
Confidence 588899999999999999999985
No 81
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=34.28 E-value=1.1e+02 Score=24.88 Aligned_cols=69 Identities=16% Similarity=0.116 Sum_probs=42.2
Q ss_pred HHHHhhhhHHHHcCC--CeEEcCCCCCCCC------CCCCCccccccCCCCCc--cc-cCccccchhhHHHHHHhcccch
Q 047360 6 NFLKKRIPDIANAGT--THVWLPPPSQHAA------PQEKKEKAKNRNAPISN--FE-LGALRIPKSNLLSLHLHQQTQK 74 (104)
Q Consensus 6 k~Lk~~apeLa~aGI--TaVWLPPpsKg~s------~~GY~pyDLyd~~~lge--fd-kgsvrt~k~~i~~l~~~~~~~~ 74 (104)
..+.+.|..+.+.|| +.|||- .+.+.. +-.|++.|-+..-.+++ |+ ....+-++.=|+.||+.|+.+.
T Consensus 24 ~ev~~v~~~~~~~~iP~d~i~lD-~W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f~~~~~FPdp~~mi~~Lh~~G~kv~ 102 (340)
T cd06597 24 AEVMRQMDAHEEHGIPVTVVVIE-QWSDEATFYVFNDAQYTPKDGGAPLSYDDFSFPVEGRWPNPKGMIDELHEQGVKVL 102 (340)
T ss_pred HHHHHHHHHHHHcCCCeeEEEEe-cccCcceeeeeccchhcccccCCcceecccccCccccCCCHHHHHHHHHHCCCEEE
Confidence 568889999999997 789997 354421 22333322111001222 33 2445556777999999999884
Q ss_pred h
Q 047360 75 A 75 (104)
Q Consensus 75 ~ 75 (104)
+
T Consensus 103 l 103 (340)
T cd06597 103 L 103 (340)
T ss_pred E
Confidence 3
No 82
>TIGR03558 oxido_grp_1 luciferase family oxidoreductase, group 1. The Pfam domain family pfam00296 is named for luciferase-like monooxygenases, but the family also contains several coenzyme F420-dependent enzymes. This protein family represents a well-resolved clade within family pfam00296 and shows no restriction to coenzyme F420-positive species, unlike some other clades within pfam00296.
Probab=34.28 E-value=44 Score=26.29 Aligned_cols=24 Identities=8% Similarity=0.116 Sum_probs=20.1
Q ss_pred hhHHHHhhhhHHHHcCCCeEEcCC
Q 047360 4 WYNFLKKRIPDIANAGTTHVWLPP 27 (104)
Q Consensus 4 wWk~Lk~~apeLa~aGITaVWLPP 27 (104)
=|+.+.+.+...-++||+.+|++-
T Consensus 18 ~~~~~~~~a~~AE~lGfd~~w~~E 41 (323)
T TIGR03558 18 ALRNTVELAQHAERLGYHRFWVAE 41 (323)
T ss_pred HHHHHHHHHHHHHHcCCCEEEecc
Confidence 367777888888899999999984
No 83
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=34.22 E-value=82 Score=23.34 Aligned_cols=66 Identities=8% Similarity=-0.100 Sum_probs=41.1
Q ss_pred HHhhhhHHHHcCCCeEEcCCCCCCCCCCCCCccccccCCC-CCccccCccccchhhHHHHHHhcccchhhhhhh
Q 047360 8 LKKRIPDIANAGTTHVWLPPPSQHAAPQEKKEKAKNRNAP-ISNFELGALRIPKSNLLSLHLHQQTQKAKSTEK 80 (104)
Q Consensus 8 Lk~~apeLa~aGITaVWLPPpsKg~s~~GY~pyDLyd~~~-lgefdkgsvrt~k~~i~~l~~~~~~~~~d~v~~ 80 (104)
-.+....++++||+.|=|- -.||.-...|.... =+.|.++++..-...+.+..++||.|+.-.-.+
T Consensus 22 W~~~~~~m~~~GidtlIlq-------~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~~ 88 (166)
T PF14488_consen 22 WREEFRAMKAIGIDTLILQ-------WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYFD 88 (166)
T ss_pred HHHHHHHHHHcCCcEEEEE-------EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCCC
Confidence 4567889999999999765 23333333333111 123445444444555899999999998755443
No 84
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=32.47 E-value=76 Score=25.42 Aligned_cols=55 Identities=11% Similarity=0.085 Sum_probs=38.7
Q ss_pred HHHHhhhhHHHHcCC--CeEEcCCCCCCCCCCCCCccccccCCCCCccc--cCccccchhhHHHHHHhcccchh
Q 047360 6 NFLKKRIPDIANAGT--THVWLPPPSQHAAPQEKKEKAKNRNAPISNFE--LGALRIPKSNLLSLHLHQQTQKA 75 (104)
Q Consensus 6 k~Lk~~apeLa~aGI--TaVWLPPpsKg~s~~GY~pyDLyd~~~lgefd--kgsvrt~k~~i~~l~~~~~~~~~ 75 (104)
..+.+.|..+.+.|| +.|||-+.+.. + .+.|+ ....+.++.=|+.||++|+.+.+
T Consensus 24 ~~v~~~~~~~~~~~iP~d~i~lD~~~~~----~-----------~~~f~~d~~~fPdp~~m~~~l~~~g~~~~~ 82 (339)
T cd06604 24 EEVREIADEFRERDIPCDAIYLDIDYMD----G-----------YRVFTWDKERFPDPKELIKELHEQGFKVVT 82 (339)
T ss_pred HHHHHHHHHHHHhCCCcceEEECchhhC----C-----------CCceeeccccCCCHHHHHHHHHHCCCEEEE
Confidence 567888999999986 68888655431 1 33444 44455557779999999998853
No 85
>PRK02271 methylenetetrahydromethanopterin reductase; Provisional
Probab=32.21 E-value=47 Score=26.25 Aligned_cols=24 Identities=8% Similarity=0.110 Sum_probs=20.1
Q ss_pred hHHHHhhhhHHHHcCCCeEEcCCC
Q 047360 5 YNFLKKRIPDIANAGTTHVWLPPP 28 (104)
Q Consensus 5 Wk~Lk~~apeLa~aGITaVWLPPp 28 (104)
|..+-+.+...-++||+.||++--
T Consensus 13 ~~~~~~~a~~AE~~Gfd~vw~~eh 36 (325)
T PRK02271 13 VKKIAYLAKLAEDNGFDYAWITDH 36 (325)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccc
Confidence 667778888888999999999863
No 86
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=30.63 E-value=41 Score=29.61 Aligned_cols=52 Identities=15% Similarity=0.228 Sum_probs=36.7
Q ss_pred HHHhhhhHHHHcCCCeEEcCCCCCCCCCCCCC-------c----cccccCCCCCccc-cCccccc
Q 047360 7 FLKKRIPDIANAGTTHVWLPPPSQHAAPQEKK-------E----KAKNRNAPISNFE-LGALRIP 59 (104)
Q Consensus 7 ~Lk~~apeLa~aGITaVWLPPpsKg~s~~GY~-------p----yDLyd~~~lgefd-kgsvrt~ 59 (104)
.+++.+.-|.++|++.||.|-+.. +.|.||. + .-|---+|-|-|+ -.||-+|
T Consensus 72 ~~~~D~~~l~~~gvd~vf~P~~~e-mYp~~~~~~~~v~~~~~~~~~leG~~RPghF~GV~Tvv~K 135 (512)
T PRK13477 72 TLEADRELCESAGVDAIFAPSPEE-LYPGGAKSITQVQPPSELTSHLCGASRPGHFDGVATVVTR 135 (512)
T ss_pred CHHHHHHHHHhcCCCEEECCCHHh-cCCCCCCceEEEecCcccccccCCCCCCcceeeHHHHHHH
Confidence 477888999999999999987633 6666653 1 1122245667788 8888877
No 87
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=30.43 E-value=58 Score=27.07 Aligned_cols=65 Identities=15% Similarity=0.060 Sum_probs=47.4
Q ss_pred HHHHhhhhHHHHcCCCeEEcCCCCCCCCCCCCCccccccCCCCCccc-cCccccc----hhhHHHHHHhcccchhhhh
Q 047360 6 NFLKKRIPDIANAGTTHVWLPPPSQHAAPQEKKEKAKNRNAPISNFE-LGALRIP----KSNLLSLHLHQQTQKAKST 78 (104)
Q Consensus 6 k~Lk~~apeLa~aGITaVWLPPpsKg~s~~GY~pyDLyd~~~lgefd-kgsvrt~----k~~i~~l~~~~~~~~~d~v 78 (104)
.++.+.+..+++.|+++|=+.= | .+.|+..|+.-. .+.. .|+++.. +.=++.||++||-++|-+|
T Consensus 13 ~~~~~~~~~i~~t~lNavVIDv--K--dd~G~i~y~s~~----~~~~~~ga~~~~i~D~~~l~~~l~e~gIY~IARIv 82 (316)
T PF13200_consen 13 ERLDKLLDLIKRTELNAVVIDV--K--DDDGNITYDSQV----PLAREIGAVKPYIKDLKALVKKLKEHGIYPIARIV 82 (316)
T ss_pred HHHHHHHHHHHhcCCceEEEEE--e--cCCceEEecCCC----chhhhcccccccccCHHHHHHHHHHCCCEEEEEEE
Confidence 5688888999999999987752 1 567888887633 2222 5665544 4449999999999999776
No 88
>TIGR03841 F420_Rv3093c probable F420-dependent oxidoreductase, Rv3093c family. This model describes a small family of enzymes in the bacterial luciferase-like monooxygenase family, which includes F420-dependent enzymes such as N5,N10-methylenetetrahydromethanopterin reductase as well as FMN-dependent enzymes. All members of this family are from species that produce coenzyme F420; SIMBAL analysis suggests that members of this family bind F420 rather than FMN.
Probab=30.38 E-value=55 Score=25.67 Aligned_cols=22 Identities=18% Similarity=0.196 Sum_probs=18.3
Q ss_pred HHHHhhhhHHHHcCCCeEEcCC
Q 047360 6 NFLKKRIPDIANAGTTHVWLPP 27 (104)
Q Consensus 6 k~Lk~~apeLa~aGITaVWLPP 27 (104)
+.+.+.+...-++||++||++.
T Consensus 10 ~~~~~~a~~AE~~Gfd~~w~~e 31 (301)
T TIGR03841 10 AEATRLARAADELGYTDVWSGE 31 (301)
T ss_pred HHHHHHHHHHHHcCCCEEEecc
Confidence 4567778888899999999985
No 89
>cd01097 Tetrahydromethanopterin_reductase N5,N10-methylenetetrahydromethanopterin reductase (Mer) catalyzes the reduction of N5,N10-methylenetetrahydromethanopterin with reduced coenzyme F420 to N5-methyltetrahydromethanopterin and oxidized coenzyme F420.
Probab=29.14 E-value=32 Score=24.73 Aligned_cols=22 Identities=23% Similarity=0.291 Sum_probs=19.6
Q ss_pred hHHHHhhhhHHHHcCCCeEEcC
Q 047360 5 YNFLKKRIPDIANAGTTHVWLP 26 (104)
Q Consensus 5 Wk~Lk~~apeLa~aGITaVWLP 26 (104)
|..+.+.+....++||+++|++
T Consensus 14 ~~~~~~~a~~ae~~Gf~~~w~~ 35 (202)
T cd01097 14 PRELVELARAAEEAGFDSVWVS 35 (202)
T ss_pred HHHHHHHHHHHHHcCCchhHHh
Confidence 6778888888888999999999
No 90
>cd01096 Alkanal_monooxygenase Alkanal monooxygenase are flavin monoxygenases. Molecular oxygen is activated by reaction with reduced flavin mononucleotide (FMNH2) and reacts with an aldehyde to yield the carboxylic acid, oxidized flavin (FMN) and a blue-green light. Bacterial luciferases are heterodimers made of alpha and beta subunits which are homologous. The single activer center is on the alpha subunit. The alpha subunit has a stretch of 30 amino acid residues that is not present in the beta subunit. The beta subunit does not contain the active site and is required for the formation of the fully active heterodimer. The beta subunit does not contribute anything directly to the active site. Its role is probably to stabilize the high quantum yield conformation of the alpha subunit through interactionbs across the subunit interface.
Probab=28.94 E-value=60 Score=25.50 Aligned_cols=23 Identities=0% Similarity=-0.159 Sum_probs=18.9
Q ss_pred hHHHHhhhhHHHHcCCCeEEcCC
Q 047360 5 YNFLKKRIPDIANAGTTHVWLPP 27 (104)
Q Consensus 5 Wk~Lk~~apeLa~aGITaVWLPP 27 (104)
|+.+.+.+...-++||+.||++-
T Consensus 21 ~~~~~~~a~~Ae~lGfd~~w~~E 43 (315)
T cd01096 21 LDRMVDTGVLVDKLNFDTALVLE 43 (315)
T ss_pred HHHHHHHHHHHHHcCCCEEEecc
Confidence 56677777778889999999984
No 91
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=28.88 E-value=29 Score=26.78 Aligned_cols=23 Identities=17% Similarity=0.341 Sum_probs=17.1
Q ss_pred CchhHHHHhhhhHHHHcCCCeEE
Q 047360 2 GGWYNFLKKRIPDIANAGTTHVW 24 (104)
Q Consensus 2 g~wWk~Lk~~apeLa~aGITaVW 24 (104)
..|++.|++.+..|++.|++.|-
T Consensus 54 ~d~~RdL~~DL~~Lk~~G~~~Vv 76 (168)
T PF05706_consen 54 KDWRRDLQADLERLKDWGAQDVV 76 (168)
T ss_dssp TTEEB-HHHHHHHHHHTT--EEE
T ss_pred ccccchHHHHHHHHHHCCCCEEE
Confidence 35888999999999999999884
No 92
>PF00981 Rota_NS53: Rotavirus RNA-binding Protein 53 (NS53); InterPro: IPR002148 The proteins in this entry are variously described as either non-structural protein 1 (NSP1) or non-structural RNA-binding protein 53(NS53). They are RNA binding proteins that contain a characteristic cysteine rich region [, ]. They are made at low levels in infected cells and are a component of early replication and are known to accumulate on the cytoskeleton of the infected cell.; GO: 0003723 RNA binding
Probab=28.58 E-value=42 Score=30.03 Aligned_cols=26 Identities=27% Similarity=0.624 Sum_probs=23.3
Q ss_pred hhHHHHhhhhHHHHcCCCeEEcCCCC
Q 047360 4 WYNFLKKRIPDIANAGTTHVWLPPPS 29 (104)
Q Consensus 4 wWk~Lk~~apeLa~aGITaVWLPPps 29 (104)
||+++.+-=.++=.+|...+|-|-|.
T Consensus 10 hYrkinKLN~~vLklGaN~~WrP~p~ 35 (488)
T PF00981_consen 10 HYRKINKLNREVLKLGANDVWRPSPP 35 (488)
T ss_pred HHHHHHHHHHHhhccCCCCccccCCc
Confidence 89999998899999999999999654
No 93
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=28.33 E-value=45 Score=25.45 Aligned_cols=60 Identities=10% Similarity=-0.093 Sum_probs=33.1
Q ss_pred HhhhhHHHHcCCCeEEcCCCCCCCCCCCCCccccccCCCCCccccCccccchhhHHHHHHhcccchhhhhhhh
Q 047360 9 KKRIPDIANAGTTHVWLPPPSQHAAPQEKKEKAKNRNAPISNFELGALRIPKSNLLSLHLHQQTQKAKSTEKL 81 (104)
Q Consensus 9 k~~apeLa~aGITaVWLPPpsKg~s~~GY~pyDLyd~~~lgefdkgsvrt~k~~i~~l~~~~~~~~~d~v~~h 81 (104)
.+.+..|+++|++.|.+-.= . -.++|+.-+ + ..+.....+.|+.+|++|+.+-+-++..+
T Consensus 123 ~e~l~~Lk~aG~~~v~i~~E---~------~~~~~~~i~-~---~~s~~~~~~ai~~l~~~Gi~v~~~~i~Gl 182 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHNLD---T------SQEFYSNII-S---THTYDDRVDTLENAKKAGLKVCSGGIFGL 182 (296)
T ss_pred HHHHHHHHHcCCCEEEEccc---C------CHHHHhhcc-C---CCCHHHHHHHHHHHHHcCCEEEEeEEEeC
Confidence 34566677777777766311 1 122343110 0 22333335559999999998776665543
No 94
>PRK11181 23S rRNA (guanosine-2'-O-)-methyltransferase; Provisional
Probab=28.16 E-value=1.2e+02 Score=23.55 Aligned_cols=64 Identities=13% Similarity=0.014 Sum_probs=37.6
Q ss_pred HHHhhhhHHHHcCCCeEEcCCCCCCCCCCCCCccccccCCCCCccccCccc--cchhhHHHHHHhcccchh
Q 047360 7 FLKKRIPDIANAGTTHVWLPPPSQHAAPQEKKEKAKNRNAPISNFELGALR--IPKSNLLSLHLHQQTQKA 75 (104)
Q Consensus 7 ~Lk~~apeLa~aGITaVWLPPpsKg~s~~GY~pyDLyd~~~lgefdkgsvr--t~k~~i~~l~~~~~~~~~ 75 (104)
++-..+......|++.|++|+.+-.. |.| ....-|..+.|-.--++ ...+.|+.|+++|.++++
T Consensus 108 NlGai~Rta~a~G~~~vi~~~~~~~~----~~~-~~~r~s~Ga~~~l~~~~~~~~~~~l~~l~~~g~~i~~ 173 (244)
T PRK11181 108 NLGACLRSADAAGVHAVIVPKDRSAQ----LNA-TAKKVACGAAETVPLIRVTNLARTMRMLQEKNIWIVG 173 (244)
T ss_pred hHHHHHHHHHHcCCCEEEECCCCCCC----CCC-ceEEecCCHHHcCeEEEcCCHHHHHHHHHHCCCEEEE
Confidence 45566778889999999998765321 111 11122222222221111 224558999999999887
No 95
>COG1834 N-Dimethylarginine dimethylaminohydrolase [Amino acid transport and metabolism]
Probab=28.01 E-value=87 Score=25.78 Aligned_cols=71 Identities=11% Similarity=0.037 Sum_probs=42.3
Q ss_pred hhhhHHHHcCCCeEEcCCCCCCC-----CCCCCCccccccCCCCCccccCccccchhh----HHHHHHhcccchhhhhhh
Q 047360 10 KRIPDIANAGTTHVWLPPPSQHA-----APQEKKEKAKNRNAPISNFELGALRIPKSN----LLSLHLHQQTQKAKSTEK 80 (104)
Q Consensus 10 ~~apeLa~aGITaVWLPPpsKg~-----s~~GY~pyDLyd~~~lgefdkgsvrt~k~~----i~~l~~~~~~~~~d~v~~ 80 (104)
+-+.-+.+.||+-.||||-.+=. .+-|-...+-.-++|.|+= .|+.| ...|+..|+++|......
T Consensus 42 ~lve~l~~~gv~V~ll~~~~~~Pd~VFt~D~~~v~~~~avl~r~~~p------~R~gE~~~~~~~~~~lgi~i~~~~~~~ 115 (267)
T COG1834 42 ALVEALEKNGVEVHLLPPIEGLPDQVFTRDPGLVTGEGAVLARMGAP------ERRGEEEAIKETLESLGIPIYPRVEAG 115 (267)
T ss_pred HHHHHHHHCCCEEEEcCcccCCCcceEeccceeEecccEEEeccCCh------hhccCHHHHHHHHHHcCCcccccccCC
Confidence 34556788899999999765521 2335444444444444331 22222 677899999987766554
Q ss_pred hhcC-CC
Q 047360 81 LRMG-GS 86 (104)
Q Consensus 81 h~~g-~d 86 (104)
=--| ||
T Consensus 116 ~~eG~GD 122 (267)
T COG1834 116 VFEGAGD 122 (267)
T ss_pred Ccccccc
Confidence 4445 44
No 96
>cd00481 Ribosomal_L19e Ribosomal protein L19e. L19e is found in the large ribosomal subunit of eukaryotes and archaea. L19e is distinct from the ribosomal subunit L19, which is found in prokaryotes. It consists of two small globular domains connected by an extended segment. It is located toward the surface of the large subunit, with one exposed end involved in forming the intersubunit bridge with the small subunit. The other exposed end is involved in forming the translocon binding site, along with L22, L23, L24, L29, and L31e subunits.
Probab=27.95 E-value=38 Score=25.77 Aligned_cols=22 Identities=32% Similarity=0.679 Sum_probs=17.2
Q ss_pred HhhhhHHHHcCCCeEEcCCCCC
Q 047360 9 KKRIPDIANAGTTHVWLPPPSQ 30 (104)
Q Consensus 9 k~~apeLa~aGITaVWLPPpsK 30 (104)
+..|.++-..|...|||.|-.-
T Consensus 5 kRLAA~vL~~G~~rVW~DP~~~ 26 (145)
T cd00481 5 KRLAADILKCGKNRVWIDPNEL 26 (145)
T ss_pred HHHHHHHHCCCCCceeeCHHHH
Confidence 3456778889999999988643
No 97
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=27.68 E-value=1.1e+02 Score=25.99 Aligned_cols=61 Identities=8% Similarity=-0.079 Sum_probs=37.5
Q ss_pred hHHHHhhhhHHHHcCCCeEEcCCC--CCCC-CCCCCCccccccCCCCCccccCccccchhhHHHHHHh--cccchhhhhh
Q 047360 5 YNFLKKRIPDIANAGTTHVWLPPP--SQHA-APQEKKEKAKNRNAPISNFELGALRIPKSNLLSLHLH--QQTQKAKSTE 79 (104)
Q Consensus 5 Wk~Lk~~apeLa~aGITaVWLPPp--sKg~-s~~GY~pyDLyd~~~lgefdkgsvrt~k~~i~~l~~~--~~~~~~d~v~ 79 (104)
.+.|.+.+.++.++||.+|=|=|- .|.. ..+.|.|--+.. ..|++|++. .+.|++|+-|
T Consensus 60 id~l~~~~~~~~~~Gi~~v~lFgv~~~Kd~~gs~A~~~~g~v~----------------~air~iK~~~pdl~vi~DVcL 123 (322)
T PRK13384 60 ESALADEIERLYALGIRYVMPFGISHHKDAKGSDTWDDNGLLA----------------RMVRTIKAAVPEMMVIPDICF 123 (322)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccCCCChHH----------------HHHHHHHHHCCCeEEEeeeec
Confidence 467889999999999999985443 2322 333443322222 225555554 6777887766
Q ss_pred hh
Q 047360 80 KL 81 (104)
Q Consensus 80 ~h 81 (104)
..
T Consensus 124 c~ 125 (322)
T PRK13384 124 CE 125 (322)
T ss_pred cc
Confidence 43
No 98
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=27.60 E-value=57 Score=25.33 Aligned_cols=25 Identities=16% Similarity=0.191 Sum_probs=21.1
Q ss_pred hHHHHhhhhHHHHcCCCeEEcCCCC
Q 047360 5 YNFLKKRIPDIANAGTTHVWLPPPS 29 (104)
Q Consensus 5 Wk~Lk~~apeLa~aGITaVWLPPps 29 (104)
....-+++....++|-+.||+|+|.
T Consensus 159 ~~eai~Ra~ay~~AGAD~v~v~~~~ 183 (243)
T cd00377 159 LDEAIERAKAYAEAGADGIFVEGLK 183 (243)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 3455678888999999999999997
No 99
>cd01418 Ribosomal_L19e_A Ribosomal protein L19e, archaeal. L19e is found in the large ribosomal subunit of eukaryotes and archaea. L19e is distinct from the ribosomal subunit L19, which is found in prokaryotes. It consists of two small globular domains connected by an extended segment. It is located toward the surface of the large subunit, with one exposed end involved in forming the intersubunit bridge with the small subunit. The other exposed end is involved in forming the translocon binding site, along with L22, L23, L24, L29, and L31e subunits.
Probab=27.57 E-value=41 Score=25.59 Aligned_cols=22 Identities=27% Similarity=0.649 Sum_probs=17.3
Q ss_pred HhhhhHHHHcCCCeEEcCCCCC
Q 047360 9 KKRIPDIANAGTTHVWLPPPSQ 30 (104)
Q Consensus 9 k~~apeLa~aGITaVWLPPpsK 30 (104)
+..|.++-..|...|||.|-.-
T Consensus 5 kRLAA~iL~~G~~rVw~DP~~~ 26 (145)
T cd01418 5 RRLAADILGVGINRVWIDPERL 26 (145)
T ss_pred HHHHHHHHCCCCCeeeeChHHH
Confidence 4457778899999999988643
No 100
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=27.45 E-value=1.2e+02 Score=24.18 Aligned_cols=62 Identities=10% Similarity=-0.002 Sum_probs=40.6
Q ss_pred HHHHhhhhHHHHcCC--CeEEcCCCCCCCCCCCCCccccccCCCCCccc--cCccccchhhHHHHHHhcccchhh
Q 047360 6 NFLKKRIPDIANAGT--THVWLPPPSQHAAPQEKKEKAKNRNAPISNFE--LGALRIPKSNLLSLHLHQQTQKAK 76 (104)
Q Consensus 6 k~Lk~~apeLa~aGI--TaVWLPPpsKg~s~~GY~pyDLyd~~~lgefd--kgsvrt~k~~i~~l~~~~~~~~~d 76 (104)
..+.+.|..+.+.|| +.|||-.-+-+. +. +....|.|+ ....+.+++=|+.||.+|+.+.+=
T Consensus 24 ~~v~~~~~~~~~~~iP~d~i~lD~~w~~~--------~~-~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~ 89 (317)
T cd06598 24 QEVDDTIKTLREKDFPLDAAILDLYWFGK--------DI-DKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVI 89 (317)
T ss_pred HHHHHHHHHHHHhCCCceEEEEechhhcC--------cc-cCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEE
Confidence 567888889999886 678776543221 11 112244565 555566677799999999977553
No 101
>PF04785 Rhabdo_M2: Rhabdovirus matrix protein M2; InterPro: IPR006870 M protein is involved in condensing and targeting the ribonucleoprotein (RNP) coil to the plasma membrane. M interacts specifically with the transmembrane spike protein (G) and it is important for the incorporation of G protein into budding virions [].; GO: 0016032 viral reproduction, 0019031 viral envelope; PDB: 2W2S_A.
Probab=26.96 E-value=23 Score=27.99 Aligned_cols=9 Identities=56% Similarity=1.604 Sum_probs=2.0
Q ss_pred CeEEcCCCC
Q 047360 21 THVWLPPPS 29 (104)
Q Consensus 21 TaVWLPPps 29 (104)
+.+|||||-
T Consensus 29 ddlwlpppe 37 (202)
T PF04785_consen 29 DDLWLPPPE 37 (202)
T ss_dssp ---EE----
T ss_pred ccccCCCcc
Confidence 568999995
No 102
>TIGR03842 F420_CPS_4043 F420-dependent oxidoreductase, CPS_4043 family. This model represents a family of putative F420-dependent oxidoreductases, fairly closely related to 5,10-methylenetetrahydromethanopterin reductase (mer, TIGR03555), both within the bacterial luciferase-like monoxygenase (LLM) family. A fairly deep split (to about 40 % sequence identity) in the present family separates a strictly Actinobacterial clade from an alpha/beta/gamma-proteobacterial clade, in which the member is often the only apparent F420-dependent LLM family member. The specific function, and whether Actinobacterial and Proteobacterial clades differ in function, are unknown.
Probab=26.75 E-value=67 Score=25.51 Aligned_cols=23 Identities=13% Similarity=0.096 Sum_probs=18.9
Q ss_pred hHHHHhhhhHHHHcCCCeEEcCC
Q 047360 5 YNFLKKRIPDIANAGTTHVWLPP 27 (104)
Q Consensus 5 Wk~Lk~~apeLa~aGITaVWLPP 27 (104)
|..+.+.+...-++||+.||++-
T Consensus 12 ~~~~~~~a~~AE~~Gfd~~w~~e 34 (330)
T TIGR03842 12 ASRVVELARQAERHGFDYVWTFD 34 (330)
T ss_pred HHHHHHHHHHHHHcCCcEEEecC
Confidence 56677778888889999999964
No 103
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=26.62 E-value=1e+02 Score=18.41 Aligned_cols=21 Identities=19% Similarity=0.101 Sum_probs=16.5
Q ss_pred HHhhhhHHHHcCCCeEEcCCC
Q 047360 8 LKKRIPDIANAGTTHVWLPPP 28 (104)
Q Consensus 8 Lk~~apeLa~aGITaVWLPPp 28 (104)
+.+.+..|++.|++.++-|.+
T Consensus 75 ~~~~~~~l~~~g~~~~~~~~~ 95 (114)
T cd07245 75 LDAFRARLKAAGVPYTESDVP 95 (114)
T ss_pred HHHHHHHHHHcCCCcccccCC
Confidence 556678899999999886644
No 104
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=26.54 E-value=32 Score=25.95 Aligned_cols=30 Identities=20% Similarity=0.234 Sum_probs=14.1
Q ss_pred CCeEEcCCCCCCCCCCCCCccccccC-CCCCccc
Q 047360 20 TTHVWLPPPSQHAAPQEKKEKAKNRN-APISNFE 52 (104)
Q Consensus 20 ITaVWLPPpsKg~s~~GY~pyDLyd~-~~lgefd 52 (104)
++.|.|-||+-|. .|.-.+.||+ ..+..++
T Consensus 70 ~D~vFlSPPWGGp---~Y~~~~~fdL~~~~~p~~ 100 (163)
T PF09445_consen 70 FDVVFLSPPWGGP---SYSKKDVFDLEKSMQPFN 100 (163)
T ss_dssp -SEEEE---BSSG---GGGGSSSB-TTTSSSS--
T ss_pred ccEEEECCCCCCc---cccccCccCHHHccCCCC
Confidence 8999999999975 3444444443 2345544
No 105
>PRK07094 biotin synthase; Provisional
Probab=26.53 E-value=56 Score=25.56 Aligned_cols=22 Identities=14% Similarity=-0.123 Sum_probs=17.0
Q ss_pred hhhHHHHHHhcccchhhhhhhh
Q 047360 60 KSNLLSLHLHQQTQKAKSTEKL 81 (104)
Q Consensus 60 k~~i~~l~~~~~~~~~d~v~~h 81 (104)
.+.|+.|++.|+.+-+.++..+
T Consensus 168 ~~~i~~l~~~Gi~v~~~~iiGl 189 (323)
T PRK07094 168 IACLKDLKELGYEVGSGFMVGL 189 (323)
T ss_pred HHHHHHHHHcCCeecceEEEEC
Confidence 4459999999998877777653
No 106
>TIGR03854 F420_MSMEG_3544 probable F420-dependent oxidoreductase, MSMEG_3544 family. Coenzyme F420 has a limited phylogenetic distribution, including methanogenic archaea, Mycobacterium tuberculosis and related species, Colwellia psychrerythraea 34H, Rhodopseudomonas palustris HaA2, and others. Partial phylogenetic profiling identifies protein subfamilies, within the larger family called luciferase-like monooxygenanases (pfam00296), that appear only in F420-positive genomes and are likely to be F420-dependent. This model describes a small family, closely related to other such families in the putative F420-binding region, exemplified by MSMEG_3544 in Mycobacterium smegmatis.
Probab=26.03 E-value=71 Score=25.23 Aligned_cols=24 Identities=17% Similarity=0.331 Sum_probs=18.6
Q ss_pred hHHHHhhhhHHHHcCCCeEEcCCC
Q 047360 5 YNFLKKRIPDIANAGTTHVWLPPP 28 (104)
Q Consensus 5 Wk~Lk~~apeLa~aGITaVWLPPp 28 (104)
+..+.+.+...-++||++||++--
T Consensus 12 ~~~~~~~a~~AE~~Gfd~~w~~eh 35 (290)
T TIGR03854 12 PAELPAIVDRLESTGVDSLWLSEL 35 (290)
T ss_pred HHHHHHHHHHHHHhCCCEEEeccc
Confidence 455667777888899999998753
No 107
>TIGR03621 F420_MSMEG_2516 probable F420-dependent oxidoreductase, MSMEG_2516 family. Coenzyme F420 is produced by methanogenic archaea, a number of the Actinomycetes (including Mycobacterium tuberculosis), and rare members of other lineages. The resulting information-rich phylogenetic profile identifies candidate F420-dependent oxidoreductases within the family of luciferase-like enzymes (pfam00296), where the species range for the subfamily encompasses many F420-positive genomes without straying beyond. This family is uncharacterized, and named for member MSMEG_2516 from Mycobacterium smegmatis.
Probab=26.00 E-value=72 Score=25.44 Aligned_cols=23 Identities=17% Similarity=0.081 Sum_probs=19.8
Q ss_pred hHHHHhhhhHHHHcCCCeEEcCC
Q 047360 5 YNFLKKRIPDIANAGTTHVWLPP 27 (104)
Q Consensus 5 Wk~Lk~~apeLa~aGITaVWLPP 27 (104)
+..+.+.+...-++||+.||++-
T Consensus 13 ~~~~~~~a~~AE~~Gfd~~~~~e 35 (295)
T TIGR03621 13 ARDLVDLARRAEDAGFDVLTVPD 35 (295)
T ss_pred HHHHHHHHHHHHHcCCCEEEecc
Confidence 57778888888899999999975
No 108
>PF02569 Pantoate_ligase: Pantoate-beta-alanine ligase; InterPro: IPR003721 D-Pantothenate is synthesized via four enzymes from ketoisovalerate, which is an intermediate of branched-chain amino acid synthesis []. Pantoate-beta-alanine ligase, also know as pantothenate synthase, (6.3.2.1 from EC) catalyzes the formation of pantothenate from pantoate and alanine in the pantothenate biosynthesis pathway [].; GO: 0004592 pantoate-beta-alanine ligase activity, 0015940 pantothenate biosynthetic process; PDB: 3MUE_C 1V8F_B 1UFV_A 2X3F_B 1MOP_A 3COY_B 3IOC_A 1N2E_A 3IVX_A 1N2H_A ....
Probab=25.15 E-value=47 Score=27.29 Aligned_cols=32 Identities=19% Similarity=0.336 Sum_probs=20.0
Q ss_pred HHHHhhhhHHHHcCCCeEEcCCCCCCCCCCCCC
Q 047360 6 NFLKKRIPDIANAGTTHVWLPPPSQHAAPQEKK 38 (104)
Q Consensus 6 k~Lk~~apeLa~aGITaVWLPPpsKg~s~~GY~ 38 (104)
+.++..+.-|.++|++.||+|.+.. +.|.|+.
T Consensus 73 R~~e~D~~ll~~~gvD~vF~Ps~~e-mYP~~~~ 104 (280)
T PF02569_consen 73 RTLERDLELLEKAGVDAVFAPSVEE-MYPEGFS 104 (280)
T ss_dssp --HHHHHHHHHHTT-SEEE---HHH-HSTTTST
T ss_pred CChHHHHHHHhccCCCEEEcCCCCc-cCCCCCc
Confidence 4578889999999999999997433 4566654
No 109
>PRK08570 rpl19e 50S ribosomal protein L19e; Reviewed
Probab=24.73 E-value=55 Score=25.04 Aligned_cols=23 Identities=30% Similarity=0.647 Sum_probs=17.8
Q ss_pred HHhhhhHHHHcCCCeEEcCCCCC
Q 047360 8 LKKRIPDIANAGTTHVWLPPPSQ 30 (104)
Q Consensus 8 Lk~~apeLa~aGITaVWLPPpsK 30 (104)
.+..|.++-..|...|||.|-.-
T Consensus 7 qkRLAA~iL~~G~~rVw~DP~~~ 29 (150)
T PRK08570 7 QKRLAADILGVGVSRVWIDPEAL 29 (150)
T ss_pred HHHHHHHHHCCCccceeeCHHHH
Confidence 34567788899999999987543
No 110
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=24.11 E-value=1.6e+02 Score=23.90 Aligned_cols=56 Identities=14% Similarity=0.112 Sum_probs=39.0
Q ss_pred HHHHhhhhHHHHcCC--CeEEcCCCCCCCCCCCCCccccccCCCCCccc--cCccccc--hhhHHHHHHhcccchhh
Q 047360 6 NFLKKRIPDIANAGT--THVWLPPPSQHAAPQEKKEKAKNRNAPISNFE--LGALRIP--KSNLLSLHLHQQTQKAK 76 (104)
Q Consensus 6 k~Lk~~apeLa~aGI--TaVWLPPpsKg~s~~GY~pyDLyd~~~lgefd--kgsvrt~--k~~i~~l~~~~~~~~~d 76 (104)
..+.+.|..+.+.|| +.|||-.-+ ... .++|. ....+.+ ++=|..||+.|+.+.+=
T Consensus 24 ~~v~~~~~~~r~~~iP~d~i~lD~~~--------~~~-------~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~ 85 (339)
T cd06602 24 DEVKEVVENMRAAGIPLDVQWNDIDY--------MDR-------RRDFTLDPVRFPGLKMPEFVDELHANGQHYVPI 85 (339)
T ss_pred HHHHHHHHHHHHhCCCcceEEECccc--------ccC-------ccceecccccCCCccHHHHHHHHHHCCCEEEEE
Confidence 457788888888886 688885433 211 24555 6667777 66799999999986553
No 111
>PRK01060 endonuclease IV; Provisional
Probab=23.87 E-value=60 Score=24.42 Aligned_cols=24 Identities=17% Similarity=0.261 Sum_probs=19.2
Q ss_pred hHHHHhhhhHHHHcCCCeE--EcCCC
Q 047360 5 YNFLKKRIPDIANAGTTHV--WLPPP 28 (104)
Q Consensus 5 Wk~Lk~~apeLa~aGITaV--WLPPp 28 (104)
|.-+.+.+..++++|++.| |+.+|
T Consensus 11 ~~~~~~~l~~~~~~G~d~vEl~~~~p 36 (281)
T PRK01060 11 AGGLEGAVAEAAEIGANAFMIFTGNP 36 (281)
T ss_pred CCCHHHHHHHHHHcCCCEEEEECCCC
Confidence 3447888999999999999 76544
No 112
>COG2147 RPL19A Ribosomal protein L19E [Translation, ribosomal structure and biogenesis]
Probab=23.77 E-value=65 Score=24.81 Aligned_cols=22 Identities=32% Similarity=0.628 Sum_probs=18.2
Q ss_pred HHHhhhhHHHHcCCCeEEcCCC
Q 047360 7 FLKKRIPDIANAGTTHVWLPPP 28 (104)
Q Consensus 7 ~Lk~~apeLa~aGITaVWLPPp 28 (104)
..+..|.++...|+..|||-|-
T Consensus 6 ~qkRLAA~il~vG~~Rvwidp~ 27 (150)
T COG2147 6 TQKRLAADILGVGENRVWIDPN 27 (150)
T ss_pred HHHHHHHHHHccCcceeeeChH
Confidence 3456688999999999999983
No 113
>PF01280 Ribosomal_L19e: Ribosomal protein L19e; InterPro: IPR000196 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents structural domain of the ribosomal protein L19 from eukaryotes, as well as L19e from archaea []. L19/L19e is absent in bacteria. L19/L19e is part of the large ribosomal subunit, whose structure has been determined in a number of eukaryotic and archaeal species []. L19/L19e is a multi-helical protein consisting of two different 3-helical domains connected by a long, partly helical linker.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3IZR_T 3O58_S 3O5H_S 3IZS_T 2WWA_J 1S1I_P 2WW9_J 2ZKR_7 4A1A_O 4A1C_O ....
Probab=23.68 E-value=54 Score=24.92 Aligned_cols=22 Identities=23% Similarity=0.596 Sum_probs=15.3
Q ss_pred HHhhhhHHHHcCCCeEEcCCCC
Q 047360 8 LKKRIPDIANAGTTHVWLPPPS 29 (104)
Q Consensus 8 Lk~~apeLa~aGITaVWLPPps 29 (104)
-+..|.++-..|...|||.|-.
T Consensus 6 QKRLAa~vL~~G~~rVw~DP~~ 27 (148)
T PF01280_consen 6 QKRLAASVLGCGKNRVWIDPNE 27 (148)
T ss_dssp HHHHHHHHHTS-GGGEEE-STT
T ss_pred HHHHHHHHHCCCCCcEEeCHHH
Confidence 3455778888999999997754
No 114
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=23.61 E-value=89 Score=23.69 Aligned_cols=20 Identities=15% Similarity=0.107 Sum_probs=16.0
Q ss_pred HHhhhhHHHHcCCCeEEcCC
Q 047360 8 LKKRIPDIANAGTTHVWLPP 27 (104)
Q Consensus 8 Lk~~apeLa~aGITaVWLPP 27 (104)
+.+.++.++++||+.|=|++
T Consensus 18 ~~e~l~~~~~~G~~~VEl~~ 37 (279)
T TIGR00542 18 WLERLQLAKTCGFDFVEMSV 37 (279)
T ss_pred HHHHHHHHHHcCCCEEEEec
Confidence 56778899999999995543
No 115
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=23.57 E-value=1.3e+02 Score=25.64 Aligned_cols=61 Identities=10% Similarity=0.023 Sum_probs=38.2
Q ss_pred hHHHHhhhhHHHHcCCCeEEcCCC---C-CCC-CCCCCCccccccCCCCCccccCccccchhhHHHHHH--hcccchhhh
Q 047360 5 YNFLKKRIPDIANAGTTHVWLPPP---S-QHA-APQEKKEKAKNRNAPISNFELGALRIPKSNLLSLHL--HQQTQKAKS 77 (104)
Q Consensus 5 Wk~Lk~~apeLa~aGITaVWLPPp---s-Kg~-s~~GY~pyDLyd~~~lgefdkgsvrt~k~~i~~l~~--~~~~~~~d~ 77 (104)
.+.|.+.+.++.++||.+|=|=|. . |.. +.+.|.+--+.. ..|+.+++ -.+.|++|+
T Consensus 53 ~d~l~~~v~~~~~~Gi~~v~lFgv~~~~~KD~~gs~A~~~~g~v~----------------~air~iK~~~p~l~vi~DV 116 (320)
T cd04823 53 IDELLKEAEEAVDLGIPAVALFPVTPPELKSEDGSEAYNPDNLVC----------------RAIRAIKEAFPELGIITDV 116 (320)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCCCcccCCcccccccCCCChHH----------------HHHHHHHHhCCCcEEEEee
Confidence 478899999999999999987443 2 432 344554433322 12333333 367888887
Q ss_pred hhhh
Q 047360 78 TEKL 81 (104)
Q Consensus 78 v~~h 81 (104)
-|..
T Consensus 117 clc~ 120 (320)
T cd04823 117 ALDP 120 (320)
T ss_pred eccC
Confidence 7654
No 116
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=23.54 E-value=1.3e+02 Score=23.96 Aligned_cols=57 Identities=12% Similarity=-0.014 Sum_probs=38.0
Q ss_pred HHHHhhhhHHHHcC--CCeEEcCCCCCCCCCCCCCccccccCCCCCccc--cCccccchhhHHHHHHhcccchh
Q 047360 6 NFLKKRIPDIANAG--TTHVWLPPPSQHAAPQEKKEKAKNRNAPISNFE--LGALRIPKSNLLSLHLHQQTQKA 75 (104)
Q Consensus 6 k~Lk~~apeLa~aG--ITaVWLPPpsKg~s~~GY~pyDLyd~~~lgefd--kgsvrt~k~~i~~l~~~~~~~~~ 75 (104)
..+.+.+..+.+.| ++.|||---+- ...| .++|+ +...+.+++=|+.||++|+.+.+
T Consensus 24 ~ev~~~~~~~~~~~iP~d~i~lD~~~~--~~~~-----------~~~f~~d~~~FPdp~~mi~~L~~~G~kv~~ 84 (319)
T cd06591 24 EELLDVAKEYRKRGIPLDVIVQDWFYW--PKQG-----------WGEWKFDPERFPDPKAMVRELHEMNAELMI 84 (319)
T ss_pred HHHHHHHHHHHHhCCCccEEEEechhh--cCCC-----------ceeEEEChhhCCCHHHHHHHHHHCCCEEEE
Confidence 56788888888885 57888853211 1111 14665 55555557779999999998766
No 117
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=23.18 E-value=1.1e+02 Score=18.91 Aligned_cols=22 Identities=14% Similarity=0.228 Sum_probs=17.6
Q ss_pred HHhhhhHHHHcCCCeEEcCCCC
Q 047360 8 LKKRIPDIANAGTTHVWLPPPS 29 (104)
Q Consensus 8 Lk~~apeLa~aGITaVWLPPps 29 (104)
+.+....|.++|++-++-|.+.
T Consensus 79 ~~~~~~~l~~~G~~~~~~~~~~ 100 (125)
T cd07253 79 IDELVAHLEAHGVPIEEGPVPR 100 (125)
T ss_pred HHHHHHHHHHCCceeecCcccc
Confidence 6777889999999988866543
No 118
>cd01417 Ribosomal_L19e_E Ribosomal protein L19e, eukaryotic. L19e is found in the large ribosomal subunit of eukaryotes and archaea. L19e is distinct from the ribosomal subunit L19, which is found in prokaryotes. It consists of two small globular domains connected by an extended segment. It is located toward the surface of the large subunit, with one exposed end involved in forming the intersubunit bridge with the small subunit. The other exposed end is involved in forming the translocon binding site, along with L22, L23, L24, L29, and L31e subunits.
Probab=22.93 E-value=52 Score=25.49 Aligned_cols=22 Identities=27% Similarity=0.605 Sum_probs=16.9
Q ss_pred HhhhhHHHHcCCCeEEcCCCCC
Q 047360 9 KKRIPDIANAGTTHVWLPPPSQ 30 (104)
Q Consensus 9 k~~apeLa~aGITaVWLPPpsK 30 (104)
+..|.++-..|...|||.|-.-
T Consensus 5 KRLAA~vL~cG~~rVW~DP~~~ 26 (164)
T cd01417 5 KRLAASVLKCGKRKVWLDPNEI 26 (164)
T ss_pred HHHHHHHHCCCCCceeeCHHHH
Confidence 3456777789999999988543
No 119
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon in several bacteria [].
Probab=22.90 E-value=1.2e+02 Score=23.01 Aligned_cols=35 Identities=14% Similarity=0.201 Sum_probs=26.5
Q ss_pred hhHHHHhhhhHHHHcCCCeEEcCCCCCCCCCCCCCc
Q 047360 4 WYNFLKKRIPDIANAGTTHVWLPPPSQHAAPQEKKE 39 (104)
Q Consensus 4 wWk~Lk~~apeLa~aGITaVWLPPpsKg~s~~GY~p 39 (104)
.=..+.+.+..|+..|---|||-|..... -.||+|
T Consensus 164 ~~~~~~~~l~~l~~r~~rviwLnP~~~~~-~~~~~~ 198 (222)
T PF05762_consen 164 DPEPLAEELRRLRRRGRRVIWLNPLPRAG-WPGYDP 198 (222)
T ss_pred ChHHHHHHHHHHHHhCCEEEEECCccccc-CCCCCh
Confidence 34567888999999999999999986543 334444
No 120
>TIGR03554 F420_G6P_DH glucose-6-phosphate dehydrogenase, F420-dependent. This family consists of the F420-dependent glucose-6-phosphate dehydrogenase of Mycobacterium and Nocardia. It shows homology to several other F420-dependent enzymes rather than to the NAD or NADP-dependent glucose-6-phosphate dehydrogenases.
Probab=22.81 E-value=87 Score=25.01 Aligned_cols=22 Identities=9% Similarity=-0.102 Sum_probs=17.4
Q ss_pred HHHHhhhhHHHHcCCCeEEcCC
Q 047360 6 NFLKKRIPDIANAGTTHVWLPP 27 (104)
Q Consensus 6 k~Lk~~apeLa~aGITaVWLPP 27 (104)
..+.+.+...-++||++||++-
T Consensus 16 ~~~~~~a~~AE~~Gfd~~w~~e 37 (331)
T TIGR03554 16 RELVELAVLAEAHGMDSATVSD 37 (331)
T ss_pred HHHHHHHHHHHHcCCCEEEEhh
Confidence 4556677778889999999974
No 121
>PF11871 DUF3391: Domain of unknown function (DUF3391); InterPro: IPR021812 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is typically between 122 to 139 amino acids in length. This domain is found associated with PF01966 from PFAM.
Probab=22.52 E-value=77 Score=21.25 Aligned_cols=79 Identities=14% Similarity=0.179 Sum_probs=40.3
Q ss_pred HhhhhHHHHcCCCeEEcCCCCCCCCCC-CCCccccccCCCCCcc----ccCccccchhhHHHHHHhcccchhhhhhhhhc
Q 047360 9 KKRIPDIANAGTTHVWLPPPSQHAAPQ-EKKEKAKNRNAPISNF----ELGALRIPKSNLLSLHLHQQTQKAKSTEKLRM 83 (104)
Q Consensus 9 k~~apeLa~aGITaVWLPPpsKg~s~~-GY~pyDLyd~~~lgef----dkgsvrt~k~~i~~l~~~~~~~~~d~v~~h~~ 83 (104)
.+.+..|.+.||..||+-+.---..+. -.-+-.-....+=... .+.+++..-.....++..-.++.-++..+-++
T Consensus 38 ~~~I~~L~~~gi~~V~Id~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~A~~~~~~a~~~~~~~~~~~~~ 117 (128)
T PF11871_consen 38 QADIEKLRRLGIQEVYIDPDKSRDVPPEKPPPEAAAKQAAPPAAPSKPKKASLEEELRRAERLYQEAKQVVRSLFNDVRA 117 (128)
T ss_pred HHHHHHHHHCCCcEEEEECCCCcCcccccCCcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 467888999999999995432211110 0000000000000000 01111111222667777888888888888888
Q ss_pred CCCC
Q 047360 84 GGSH 87 (104)
Q Consensus 84 g~d~ 87 (104)
|..=
T Consensus 118 g~~i 121 (128)
T PF11871_consen 118 GKAI 121 (128)
T ss_pred CCcc
Confidence 8643
No 122
>TIGR03571 lucif_BA3436 luciferase-type oxidoreductase, BA3436 family. This family is a distinct subgroup among members of the luciferase monooxygenase domain family. The larger family contains both FMN-binding enzymes (luciferase, alkane monooxygenase) and F420-binding enzymes (methylenetetrahydromethanopterin reductase, secondary alcohol dehydrogenase, glucose-6-phosphate dehydrogenase). Although some members of the domain family bind coenzyme F420 rather than FMN, members of this family are from species that lack the genes for F420 biosynthesis. A crystal structure, but not function, is known (but unpublished) for the member from Bacillus cereus, PDB|2B81.
Probab=22.52 E-value=91 Score=24.77 Aligned_cols=23 Identities=13% Similarity=0.179 Sum_probs=19.0
Q ss_pred hHHHHhhhhHHHHcCCCeEEcCC
Q 047360 5 YNFLKKRIPDIANAGTTHVWLPP 27 (104)
Q Consensus 5 Wk~Lk~~apeLa~aGITaVWLPP 27 (104)
+..+.+.+...-++||++||++-
T Consensus 24 ~~~~~~~a~~AE~~Gfd~vw~~d 46 (298)
T TIGR03571 24 MERQVELAQRAEALGFAALWLRD 46 (298)
T ss_pred HHHHHHHHHHHHHcCCCEEEecc
Confidence 56677778888899999999964
No 123
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=22.35 E-value=2e+02 Score=22.16 Aligned_cols=59 Identities=14% Similarity=0.076 Sum_probs=38.9
Q ss_pred HHHHhhhhHHHHcCC--CeEEcCCCCCCCCCCCCCccccccCCCCCccccCccccchhhHHHHHHhcccchh
Q 047360 6 NFLKKRIPDIANAGT--THVWLPPPSQHAAPQEKKEKAKNRNAPISNFELGALRIPKSNLLSLHLHQQTQKA 75 (104)
Q Consensus 6 k~Lk~~apeLa~aGI--TaVWLPPpsKg~s~~GY~pyDLyd~~~lgefdkgsvrt~k~~i~~l~~~~~~~~~ 75 (104)
..+.+.|..+.+.|| +.|||-+-+... | .++. =+||....+.+++-|+.||.+|+.+.+
T Consensus 24 ~~v~~~~~~~~~~~iP~d~~~lD~~~~~~----~--~~f~-----~~~d~~~Fpdp~~~i~~l~~~g~~~~~ 84 (265)
T cd06589 24 DKVLEVIDGMRENDIPLDGFVLDDDYTDG----Y--GDFT-----FDWDAGKFPNPKSMIDELHDNGVKLVL 84 (265)
T ss_pred HHHHHHHHHHHHcCCCccEEEECcccccC----C--ceee-----eecChhhCCCHHHHHHHHHHCCCEEEE
Confidence 567888889998776 588886555432 1 0110 034455556668779999999998754
No 124
>PF00490 ALAD: Delta-aminolevulinic acid dehydratase; InterPro: IPR001731 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents porphobilinogen (PBG) synthase (PBGS, or 5-aminoaevulinic acid dehydratase, or ALAD, 4.2.1.24 from EC), which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses a Knorr-type condensation reaction between two molecules of ALA to generate porphobilinogen, the pyrrolic building block used in later steps []. The structure of the enzyme is based on a TIM barrel topology made up of eight identical subunits, where each subunit binds to a metal ion that is essential for activity, usually zinc (in yeast, mammals and certain bacteria) or magnesium (in plants and other bacteria). A lysine has been implicated in the catalytic mechanism []. The lack of PBGS enzyme causes a rare porphyric disorder known as ALAD porphyria, which appears to involve conformational changes in the enzyme [.; GO: 0004655 porphobilinogen synthase activity, 0046872 metal ion binding, 0033014 tetrapyrrole biosynthetic process; PDB: 2C1H_A 1W1Z_A 1GZG_B 1W5O_B 1W5Q_B 2C18_A 1B4K_A 2C19_B 1W56_B 2C13_B ....
Probab=22.24 E-value=83 Score=26.75 Aligned_cols=60 Identities=10% Similarity=0.078 Sum_probs=33.0
Q ss_pred HHHHhhhhHHHHcCCCeEEcC----CCCCCC-CCCCCCccccccCCCCCccccCccccchhhHHHHHH--hcccchhhhh
Q 047360 6 NFLKKRIPDIANAGTTHVWLP----PPSQHA-APQEKKEKAKNRNAPISNFELGALRIPKSNLLSLHL--HQQTQKAKST 78 (104)
Q Consensus 6 k~Lk~~apeLa~aGITaVWLP----PpsKg~-s~~GY~pyDLyd~~~lgefdkgsvrt~k~~i~~l~~--~~~~~~~d~v 78 (104)
+.|.+.+.++.++||.+|-|= |-.|.. +++.|.+-.+.. ..|++|++ -.+.|++|+-
T Consensus 57 d~l~~~v~~~~~~GI~~v~lFgvi~~~~Kd~~gs~a~~~~g~v~----------------~air~iK~~~pdl~vi~Dvc 120 (324)
T PF00490_consen 57 DSLVKEVEEAVDLGIRAVILFGVIDPSKKDEEGSEAYNPDGLVQ----------------RAIRAIKKAFPDLLVITDVC 120 (324)
T ss_dssp HHHHHHHHHHHHTT--EEEEEEE-SCSC-BSS-GGGGSTTSHHH----------------HHHHHHHHHSTTSEEEEEE-
T ss_pred HHHHHHHHHHHHCCCCEEEEEeeCCcccCCcchhcccCCCChHH----------------HHHHHHHHhCCCcEEEEecc
Confidence 678899999999999999872 333432 233333333332 12333333 3688888887
Q ss_pred hhh
Q 047360 79 EKL 81 (104)
Q Consensus 79 ~~h 81 (104)
|..
T Consensus 121 lc~ 123 (324)
T PF00490_consen 121 LCE 123 (324)
T ss_dssp STT
T ss_pred ccc
Confidence 654
No 125
>smart00733 Mterf Mitochondrial termination factor repeats. Human mitochondrial termination factor is a DNA-binding protein that acts as a transcription termination factor. Six repeats occur in human mTERF, that also are present in numerous plant proteins.
Probab=22.17 E-value=87 Score=15.13 Aligned_cols=16 Identities=19% Similarity=0.270 Sum_probs=12.8
Q ss_pred HHHHhhhhHHHHcCCC
Q 047360 6 NFLKKRIPDIANAGTT 21 (104)
Q Consensus 6 k~Lk~~apeLa~aGIT 21 (104)
+.|+.++.-|..+||+
T Consensus 16 ~~l~~~~~~l~~~g~~ 31 (31)
T smart00733 16 KKLKPKVEFLKELGFS 31 (31)
T ss_pred HHhhHHHHHHHHcCCC
Confidence 4678888888888875
No 126
>TIGR03858 LLM_2I7G probable oxidoreductase, LLM family. This model describes a highly conserved, somewhat broadly distributed family withing the luciferase-like monooxygenase (LLM) superfamily. Most members are from species incapable of synthesizing coenzyme F420, bound by some members of the LLM superfamily. Members, therefore, are more likely to use FMN as a cofactor.
Probab=22.14 E-value=93 Score=24.80 Aligned_cols=22 Identities=14% Similarity=0.001 Sum_probs=15.7
Q ss_pred HHHHhhhhHHHHcCCCeEEcCC
Q 047360 6 NFLKKRIPDIANAGTTHVWLPP 27 (104)
Q Consensus 6 k~Lk~~apeLa~aGITaVWLPP 27 (104)
..+-+.+...-++||+.||++-
T Consensus 26 ~~~~~~a~~AE~lGfd~~w~~e 47 (337)
T TIGR03858 26 RQLVEEIELADQVGLDVFGVGE 47 (337)
T ss_pred HHHHHHHHHHHHcCCcEEEecc
Confidence 3344455557788999999984
No 127
>PTZ00097 60S ribosomal protein L19; Provisional
Probab=22.14 E-value=55 Score=25.65 Aligned_cols=21 Identities=24% Similarity=0.621 Sum_probs=16.5
Q ss_pred hhhhHHHHcCCCeEEcCCCCC
Q 047360 10 KRIPDIANAGTTHVWLPPPSQ 30 (104)
Q Consensus 10 ~~apeLa~aGITaVWLPPpsK 30 (104)
..|.++-..|...|||.|-.-
T Consensus 7 RLAA~vL~cG~~rVWiDP~~~ 27 (175)
T PTZ00097 7 RLAASVLKCGKNRVWLDPNEA 27 (175)
T ss_pred HHHHHHHCCCCCceeeCHHHH
Confidence 456777789999999988543
No 128
>PRK02271 methylenetetrahydromethanopterin reductase; Provisional
Probab=22.11 E-value=97 Score=24.49 Aligned_cols=22 Identities=18% Similarity=0.350 Sum_probs=18.7
Q ss_pred HHHHhhhhHHHHcCCCeEEc-CC
Q 047360 6 NFLKKRIPDIANAGTTHVWL-PP 27 (104)
Q Consensus 6 k~Lk~~apeLa~aGITaVWL-PP 27 (104)
..+.+++.++.++|||.|-| +|
T Consensus 286 e~v~~~l~~~~~aGvd~v~l~~~ 308 (325)
T PRK02271 286 EDVVEKIEALLEMGVTQIVAGSP 308 (325)
T ss_pred HHHHHHHHHHHHcCCCEEEecCC
Confidence 56778888999999999998 44
No 129
>TIGR02761 TraE_TIGR type IV conjugative transfer system protein TraE. TraE is a component of type IV secretion systems involved in conjugative transfer of plasmid DNA. The function of the TraE protein is unknown.
Probab=21.88 E-value=87 Score=23.41 Aligned_cols=21 Identities=29% Similarity=0.477 Sum_probs=18.6
Q ss_pred HHHHhhhhHHHHcCCCeEEcC
Q 047360 6 NFLKKRIPDIANAGTTHVWLP 26 (104)
Q Consensus 6 k~Lk~~apeLa~aGITaVWLP 26 (104)
..|.+.|..+++.+|+.+|.|
T Consensus 110 ~~L~~~a~~ik~~~vSs~F~~ 130 (181)
T TIGR02761 110 SRLAKEAEEIKKANASSVFYP 130 (181)
T ss_pred HHHHHHHHHHHhcCceEEEEe
Confidence 467788999999999999987
No 130
>TIGR03559 F420_Rv3520c probable F420-dependent oxidoreductase, Rv3520c family. Members of this protein family are predicted to be oxidoreductases dependent on coenzyme F420. The family includes a single member in Mycobacterium tuberculosis (Rv3520c/MT3621) but four in Mycobacterium smegmatis. Prediction that this family is F420-dependent is based primarily on Partial Phylogenetic Profiling vs. F420 biosynthesis.
Probab=21.73 E-value=97 Score=24.75 Aligned_cols=23 Identities=17% Similarity=0.330 Sum_probs=18.1
Q ss_pred HHHHhhhhHHHHcCCCeEEcCCC
Q 047360 6 NFLKKRIPDIANAGTTHVWLPPP 28 (104)
Q Consensus 6 k~Lk~~apeLa~aGITaVWLPPp 28 (104)
..+-+.+...-++||+.||++.-
T Consensus 13 ~~~~~~a~~AE~~Gfd~~w~~eh 35 (325)
T TIGR03559 13 RNAVDLVAAAEKAGLDSVWVAEA 35 (325)
T ss_pred HHHHHHHHHHHHcCCCEEEeccc
Confidence 45566777788899999999863
No 131
>TIGR03557 F420_G6P_family F420-dependent oxidoreductase, G6PDH family. Members of this protein family include F420-dependent glucose-6-phosphate dehydrogenases (TIGR03554) and related proteins. All members of this family come from species that synthesize coenzyme F420.
Probab=21.48 E-value=86 Score=24.93 Aligned_cols=23 Identities=17% Similarity=0.349 Sum_probs=18.6
Q ss_pred HHHHhhhhHHHHcCCCeEEcCCC
Q 047360 6 NFLKKRIPDIANAGTTHVWLPPP 28 (104)
Q Consensus 6 k~Lk~~apeLa~aGITaVWLPPp 28 (104)
..+.+.+...-++||+.||++-.
T Consensus 13 ~~~~~~a~~AE~~Gfd~~w~~eh 35 (316)
T TIGR03557 13 RELVRQAVAAEQAGFDFLWISDH 35 (316)
T ss_pred HHHHHHHHHHHHcCCCEEEEHhh
Confidence 45667777888899999999874
No 132
>PF01321 Creatinase_N: Creatinase/Prolidase N-terminal domain; InterPro: IPR000587 Creatinase or creatine amidinohydrolase (3.5.3.3 from EC) catalyses the conversion of creatine and water to sarcosine and urea. The enzyme works as a homodimer, and is induced by choline chloride. Each monomer of creatinase has two clearly defined domains, a small N-terminal domain, and a large C-terminal domain. The structure of the C-terminal region represents the "pita-bread" fold. The fold contains both alpha helices and an anti-parallel beta sheet within two structurally similar domains that are thought to be derived from an ancient gene duplication. The active site, where conserved, is located between the two domains. The fold is common to methionine aminopeptidase (3.4.11.18 from EC), aminopeptidase P (3.4.11.9 from EC), prolidase (3.4.13.9 from EC), agropine synthase and creatinase (3.5.3.3 from EC). Though many of these peptidases require a divalent cation, creatinase is not a metal-dependent enzyme [, , ]. ; GO: 0016787 hydrolase activity; PDB: 1PV9_A 3CTZ_A 3IL0_B 3PN9_A 2HOW_A 1WN1_B 3I7M_A 1CHM_B 3QOC_D 1KP0_B ....
Probab=21.38 E-value=72 Score=20.56 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=18.2
Q ss_pred HHHhhhhHHHHcCCCeEEcCCCC
Q 047360 7 FLKKRIPDIANAGTTHVWLPPPS 29 (104)
Q Consensus 7 ~Lk~~apeLa~aGITaVWLPPps 29 (104)
|++.--..|++.|++++.+.+|.
T Consensus 1 Rl~rl~~~m~~~gid~lll~~~~ 23 (132)
T PF01321_consen 1 RLERLRAAMAEAGIDALLLTSPE 23 (132)
T ss_dssp HHHHHHHHHHHTT-SEEEEESHH
T ss_pred CHHHHHHHHHHCCCCEEEEcChh
Confidence 46667778999999999999884
No 133
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=20.89 E-value=1.1e+02 Score=22.24 Aligned_cols=17 Identities=18% Similarity=0.278 Sum_probs=12.5
Q ss_pred hhhhHHHHcCCCeEEcC
Q 047360 10 KRIPDIANAGTTHVWLP 26 (104)
Q Consensus 10 ~~apeLa~aGITaVWLP 26 (104)
+..+.|.++||++|+=|
T Consensus 99 ~~~~~L~~~Gv~~vf~p 115 (128)
T cd02072 99 DVEKRFKEMGFDRVFAP 115 (128)
T ss_pred HHHHHHHHcCCCEEECc
Confidence 34567889999999743
No 134
>PRK00380 panC pantoate--beta-alanine ligase; Reviewed
Probab=20.33 E-value=84 Score=25.45 Aligned_cols=31 Identities=23% Similarity=0.344 Sum_probs=23.5
Q ss_pred HHHhhhhHHHHcCCCeEEcCCCCCCCCCCCCC
Q 047360 7 FLKKRIPDIANAGTTHVWLPPPSQHAAPQEKK 38 (104)
Q Consensus 7 ~Lk~~apeLa~aGITaVWLPPpsKg~s~~GY~ 38 (104)
.+++++.-|.++||+.|++| --..++|++|.
T Consensus 74 t~e~~~~ll~~~GvD~v~~p-~~~~myp~~f~ 104 (281)
T PRK00380 74 TLEADLALLEAAGVDLVFAP-SVEEMYPQGLQ 104 (281)
T ss_pred CHHHHHHHHHHcCCCEEEeC-CHHHCCCccce
Confidence 36888999999999999998 22335666654
No 135
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=20.19 E-value=1e+02 Score=25.58 Aligned_cols=24 Identities=17% Similarity=0.324 Sum_probs=21.4
Q ss_pred chhHHHHhhhhHHHHcCCCeEEcC
Q 047360 3 GWYNFLKKRIPDIANAGTTHVWLP 26 (104)
Q Consensus 3 ~wWk~Lk~~apeLa~aGITaVWLP 26 (104)
.|.+.|.+++..|.+.||+.|+|-
T Consensus 144 ~W~~il~~rl~~l~~kGfDGvfLD 167 (315)
T TIGR01370 144 EWKAIAFSYLDRVIAQGFDGVYLD 167 (315)
T ss_pred HHHHHHHHHHHHHHHcCCCeEeec
Confidence 588889999999999999999984
Done!