BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 047362
         (109 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1VRG|A Chain A, Crystal Structure Of Propionyl-coa Carboxylase, Beta
           Subunit (tm0716) From Thermotoga Maritima At 2.30 A
           Resolution
 pdb|1VRG|B Chain B, Crystal Structure Of Propionyl-coa Carboxylase, Beta
           Subunit (tm0716) From Thermotoga Maritima At 2.30 A
           Resolution
 pdb|1VRG|C Chain C, Crystal Structure Of Propionyl-coa Carboxylase, Beta
           Subunit (tm0716) From Thermotoga Maritima At 2.30 A
           Resolution
 pdb|1VRG|D Chain D, Crystal Structure Of Propionyl-coa Carboxylase, Beta
           Subunit (tm0716) From Thermotoga Maritima At 2.30 A
           Resolution
 pdb|1VRG|E Chain E, Crystal Structure Of Propionyl-coa Carboxylase, Beta
           Subunit (tm0716) From Thermotoga Maritima At 2.30 A
           Resolution
 pdb|1VRG|F Chain F, Crystal Structure Of Propionyl-coa Carboxylase, Beta
           Subunit (tm0716) From Thermotoga Maritima At 2.30 A
           Resolution
          Length = 527

 Score = 28.1 bits (61), Expect = 1.4,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 4/51 (7%)

Query: 58  NPPIKTYVGTTTNFPRRLKQHNGELRGGAKA----SQAGRPWISACIIQGF 104
           N PI T+V T    P   ++H G +R GAK     S+A  P I+  + + +
Sbjct: 365 NIPILTFVDTPGYLPGVAQEHGGIIRHGAKLLYAYSEATVPKITVILRKAY 415


>pdb|1MK0|A Chain A, Catalytic Domain Of Intron Endonuclease I-Tevi, E75a
          Mutant
          Length = 97

 Score = 28.1 bits (61), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 11/28 (39%), Positives = 17/28 (60%)

Query: 62 KTYVGTTTNFPRRLKQHNGELRGGAKAS 89
          K YVG+  +F +R K+H  +L  G  +S
Sbjct: 15 KVYVGSAKDFEKRWKRHFKDLEKGCHSS 42


>pdb|2IFS|A Chain A, Structure Of The N-Wasp Evh1 Domain In Complex With An
          Extended Wip Peptide
          Length = 169

 Score = 25.8 bits (55), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 2/31 (6%)

Query: 55 ISTNPPIKTYVGTTTNFPRRLKQHNGELRGG 85
          IS  PP + YV TT ++P +L ++  E RGG
Sbjct: 11 ISDLPPPEPYVQTTKSYPSKLARN--ESRGG 39


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.131    0.406 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,725,024
Number of Sequences: 62578
Number of extensions: 82757
Number of successful extensions: 106
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 104
Number of HSP's gapped (non-prelim): 3
length of query: 109
length of database: 14,973,337
effective HSP length: 73
effective length of query: 36
effective length of database: 10,405,143
effective search space: 374585148
effective search space used: 374585148
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)