Query 047362
Match_columns 109
No_of_seqs 120 out of 1010
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 18:12:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047362.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047362hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ywl_A Hypothetical UPF0213 pr 99.9 1.2E-24 4.1E-29 150.1 5.7 61 44-109 2-64 (96)
2 1zg2_A Hypothetical UPF0213 pr 99.9 4.3E-24 1.5E-28 149.8 6.2 59 46-109 5-63 (107)
3 1mk0_A Intron-associated endon 97.7 7.4E-05 2.5E-09 49.8 5.3 33 47-80 1-33 (97)
4 1yd6_A UVRC; DNA binding prote 96.9 0.00088 3E-08 45.5 3.7 33 47-80 14-46 (99)
5 1yd0_A Uvrabc system protein C 96.5 0.0018 6.1E-08 43.8 3.2 31 48-80 15-45 (96)
6 2wsh_A Endonuclease II; GIY-YI 92.9 0.1 3.5E-06 37.9 3.9 30 49-80 41-70 (143)
7 3h3g_B Parathyroid hormone-rel 18.4 44 0.0015 17.3 0.9 12 69-80 5-16 (24)
8 1m93_C Serine proteinase inhib 15.0 1.2E+02 0.004 16.7 2.3 22 49-71 17-38 (41)
9 2ju4_A GMP-PDE gamma, retinal 14.4 1.9E+02 0.0065 19.0 3.5 22 19-40 3-24 (87)
10 2ljk_A Protein C17ORF37; MIEN1 13.4 2.6E+02 0.0088 19.0 4.2 35 17-60 2-36 (117)
No 1
>1ywl_A Hypothetical UPF0213 protein EF2693; alpha and beta, structural genomics, northeast structural genomics consortium (NESG); NMR {Enterococcus faecalis}
Probab=99.90 E-value=1.2e-24 Score=150.07 Aligned_cols=61 Identities=33% Similarity=0.489 Sum_probs=55.2
Q ss_pred CCCCccEEEEeEeCCCCCceEEEEeCCHHHHHHHHhcCCCCCccccC--CCCCcEEEEEEeeeCCCCC
Q 047362 44 SNSRSWSVYLIISTNPPIKTYVGTTTNFPRRLKQHNGELRGGAKASQ--AGRPWISACIIQGFHDQSD 109 (109)
Q Consensus 44 ~~~~~yyVYIL~s~~~~~~lYiG~T~DL~rRl~qHn~~~~~gak~Tr--~~~Pw~LV~~~E~f~~kse 109 (109)
.+.|+||||||.|.++. ||||+|+||.+||+|||+ ++|++||+ +++||+|| |+|.|+++++
T Consensus 2 ~~~~~~~vYIL~~~~g~--lY~G~T~dl~rRl~qHn~--g~ga~~T~~~~~~p~~LV-y~e~f~~~~~ 64 (96)
T 1ywl_A 2 ENKKSHYFYVLLCQDGS--FYGGYTTEPERRLTEHNS--GTGAKYTRLAKRRPVIMI-HTEKFETRSE 64 (96)
T ss_dssp CSSSSEEEEEEECTTCC--CEEEEESCHHHHHHHHHH--HHSCSSCSSCCSSCCEEE-EEEEESSHHH
T ss_pred CCCCceEEEEEEcCCCC--EEEEEeCCHHHHHHHHHc--CCCCCcccccCCCCeEEE-EEEecCCHHH
Confidence 45688999999998877 999999999999999998 46899999 99999999 8999999753
No 2
>1zg2_A Hypothetical UPF0213 protein BH0048; BHR2, structure, autostructure, northeast structural genomics consortium, PSI; NMR {Bacillus halodurans}
Probab=99.90 E-value=4.3e-24 Score=149.76 Aligned_cols=59 Identities=25% Similarity=0.420 Sum_probs=53.6
Q ss_pred CCccEEEEeEeCCCCCceEEEEeCCHHHHHHHHhcCCCCCccccCCCCCcEEEEEEeeeCCCCC
Q 047362 46 SRSWSVYLIISTNPPIKTYVGTTTNFPRRLKQHNGELRGGAKASQAGRPWISACIIQGFHDQSD 109 (109)
Q Consensus 46 ~~~yyVYIL~s~~~~~~lYiG~T~DL~rRl~qHn~~~~~gak~Tr~~~Pw~LV~~~E~f~~kse 109 (109)
+|+||||||.|.++. +|||+|+||.+||+|||+ ++|++||++++||+|| |+|.|+++++
T Consensus 5 ~~~~~VYIL~~~~g~--lY~G~T~dl~rRl~qH~~--g~ga~~T~~~~p~~LV-y~e~f~~~~~ 63 (107)
T 1zg2_A 5 PMNHYVYILECKDGS--WYTGYTTDVDRRIKKHAS--GKGAKYTRGRGPFRLV-ATWAFPSKEE 63 (107)
T ss_dssp -CCEEEEEEECTTSC--EEEEEECCHHHHHHHHHH--HTTCCSCCCCSSCEEE-EEEEESCHHH
T ss_pred CCceEEEEEEcCCCC--EEEEEECCHHHHHHHHHc--cCCCCccccCCCCEEE-EEEecCCHHH
Confidence 578999999998877 999999999999999998 4689999999999999 8999999753
No 3
>1mk0_A Intron-associated endonuclease 1; alpha/beta fold, catalytic domain, DNA-binding surface, hydrolase; HET: CIT; 1.60A {Enterobacteria phage T4} SCOP: d.226.1.1 PDB: 1ln0_A
Probab=97.66 E-value=7.4e-05 Score=49.80 Aligned_cols=33 Identities=33% Similarity=0.510 Sum_probs=28.8
Q ss_pred CccEEEEeEeCCCCCceEEEEeCCHHHHHHHHhc
Q 047362 47 RSWSVYLIISTNPPIKTYVGTTTNFPRRLKQHNG 80 (109)
Q Consensus 47 ~~yyVYIL~s~~~~~~lYiG~T~DL~rRl~qHn~ 80 (109)
|.--||+|.|...+ ++|||.|.||..|+.+|..
T Consensus 1 mk~GIY~I~n~~ng-k~YIGst~~l~~R~~~~~~ 33 (97)
T 1mk0_A 1 MKSGIYQIKNTLNN-KVYVGSAKDFEKRWKRHFK 33 (97)
T ss_dssp CCCEEEEEEETTTC-CEEEEEESSHHHHHHHHHH
T ss_pred CceEEEEEEECCCC-CEEEEecCCHHHHHHHHHH
Confidence 44569999999777 7999999999999999963
No 4
>1yd6_A UVRC; DNA binding protein; 2.00A {Bacillus caldotenax}
Probab=96.87 E-value=0.00088 Score=45.54 Aligned_cols=33 Identities=18% Similarity=0.309 Sum_probs=29.4
Q ss_pred CccEEEEeEeCCCCCceEEEEeCCHHHHHHHHhc
Q 047362 47 RSWSVYLIISTNPPIKTYVGTTTNFPRRLKQHNG 80 (109)
Q Consensus 47 ~~yyVYIL~s~~~~~~lYiG~T~DL~rRl~qHn~ 80 (109)
..--||++...++. .+|||-+.||.+|+.+|-.
T Consensus 14 ~~pGVY~~~d~~g~-vlYVGKAknLr~Rv~syf~ 46 (99)
T 1yd6_A 14 EQPGCYLMKDKHGT-VIYVGKAKSLKERVRSYFT 46 (99)
T ss_dssp SSCEEEEEECSSCC-EEEEEEESCHHHHHHGGGS
T ss_pred CCCeEEEEEcCCCC-EEEEecCcCHHHHHHHHcc
Confidence 34469999999998 9999999999999999965
No 5
>1yd0_A Uvrabc system protein C; DNA binding protein; 1.50A {Thermotoga maritima} PDB: 1ycz_A 1yd1_A 1yd4_A 1yd3_A 1yd2_A 1yd5_A
Probab=96.51 E-value=0.0018 Score=43.83 Aligned_cols=31 Identities=19% Similarity=0.364 Sum_probs=27.7
Q ss_pred ccEEEEeEeCCCCCceEEEEeCCHHHHHHHHhc
Q 047362 48 SWSVYLIISTNPPIKTYVGTTTNFPRRLKQHNG 80 (109)
Q Consensus 48 ~yyVYIL~s~~~~~~lYiG~T~DL~rRl~qHn~ 80 (109)
.--||++.. ++. .+|||-+.||.+|+.+|-.
T Consensus 15 ~pGVY~~~d-~g~-vlYVGKAknLr~Rv~syf~ 45 (96)
T 1yd0_A 15 EPGVYIFKN-KGV-PIYIGKAKRLSNRLRSYLN 45 (96)
T ss_dssp SCEEEEEEE-TTE-EEEEEEESSHHHHHHGGGS
T ss_pred CCeEEEEEC-CCe-EEEEecCcCHHHHHHHHcc
Confidence 346999999 887 8999999999999999975
No 6
>2wsh_A Endonuclease II; GIY-YIG, hydrolase; 1.90A {Enterobacteria phage T4}
Probab=92.87 E-value=0.1 Score=37.88 Aligned_cols=30 Identities=27% Similarity=0.428 Sum_probs=25.5
Q ss_pred cEEEEeEeCCCCCceEEEEeCCHHHHHHHHhc
Q 047362 49 WSVYLIISTNPPIKTYVGTTTNFPRRLKQHNG 80 (109)
Q Consensus 49 yyVYIL~s~~~~~~lYiG~T~DL~rRl~qHn~ 80 (109)
--||++.. ++. .+|||-+.||.+|+...-.
T Consensus 41 ~GVY~~~~-~g~-ViYVGKAknLkkRv~sYf~ 70 (143)
T 2wsh_A 41 NVIYAIAI-NDE-LVYIGKTKNLRKRINYYRT 70 (143)
T ss_dssp SEEEEEEE-TTE-EEEEEEESCHHHHHHHHHH
T ss_pred ceEEEEEc-CCe-EEEEEecccHhHHHHHhcC
Confidence 35888885 777 8999999999999999843
No 7
>3h3g_B Parathyroid hormone-related protein; GPCR, extracellular domain, PTHRP, PTH, PThr1, sugar transpo transport, membrane protein; HET: MAL; 1.94A {Escherichia coli}
Probab=18.37 E-value=44 Score=17.30 Aligned_cols=12 Identities=25% Similarity=0.351 Sum_probs=10.2
Q ss_pred CCHHHHHHHHhc
Q 047362 69 TNFPRRLKQHNG 80 (109)
Q Consensus 69 ~DL~rRl~qHn~ 80 (109)
.|+.||++-|+.
T Consensus 5 Q~~rRr~wL~~l 16 (24)
T 3h3g_B 5 QDLRRRFFLHHL 16 (26)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 489999999984
No 8
>1m93_C Serine proteinase inhibitor 2; serpin, CRMA, apoptosis, ICE inhibitor, viral protein; 1.65A {Cowpox virus} SCOP: e.1.1.1 PDB: 1c8o_B 1f0c_B
Probab=15.00 E-value=1.2e+02 Score=16.67 Aligned_cols=22 Identities=18% Similarity=0.221 Sum_probs=14.8
Q ss_pred cEEEEeEeCCCCCceEEEEeCCH
Q 047362 49 WSVYLIISTNPPIKTYVGTTTNF 71 (109)
Q Consensus 49 yyVYIL~s~~~~~~lYiG~T~DL 71 (109)
-|+|+|+..++. .|+.|.-.|+
T Consensus 17 PFlf~I~~~~~~-iLF~G~v~~P 38 (41)
T 1m93_C 17 PFIYVIRHVDGK-ILFVGRYSSP 38 (41)
T ss_dssp CEEEEEEETTSC-EEEEEEECSC
T ss_pred CEEEEEEECCCC-EEEEEEeCCc
Confidence 356666655566 7999987664
No 9
>2ju4_A GMP-PDE gamma, retinal ROD rhodopsin-sensitive CGMP 3',5'-cyclic phosphodiesterase subunit gamma...; intrinsic disordered protein; HET: RCY; NMR {Bos taurus}
Probab=14.35 E-value=1.9e+02 Score=18.96 Aligned_cols=22 Identities=14% Similarity=0.075 Sum_probs=11.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC
Q 047362 19 PSKLSSSSSSPTPIRSQSQSKR 40 (109)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~ 40 (109)
.+.|++++.+++...+++-+..
T Consensus 3 ~~~p~~~~~~~~~~~~gPttpr 24 (87)
T 2ju4_A 3 LEPPKAECRSATRVMGGPCTPR 24 (87)
T ss_dssp SSCCCCCCTTCSSSSCSSCCCS
T ss_pred CCCCCcccccCCccCCCCCCCC
Confidence 3455555555555554444433
No 10
>2ljk_A Protein C17ORF37; MIEN1, oncoprotein, signaling protein; NMR {Homo sapiens}
Probab=13.43 E-value=2.6e+02 Score=18.98 Aligned_cols=35 Identities=6% Similarity=0.001 Sum_probs=20.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccEEEEeEeCCCC
Q 047362 17 PNPSKLSSSSSSPTPIRSQSQSKRTPNSNSRSWSVYLIISTNPP 60 (109)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yyVYIL~s~~~~ 60 (109)
+-+|||.+++++| +++..++.... -|=|-+|..-.
T Consensus 2 ~~~~~~g~~~~~p--~~~~~~~~~~v-------rV~IeYC~~C~ 36 (117)
T 2ljk_A 2 SMSGEPGQTSVAP--PPEEVEPGSGV-------RIVVEYCEPCG 36 (117)
T ss_dssp CSCCSCCCSCCCC--CCCCCCTTCSC-------CCEEEECTTTT
T ss_pred CCCCCCCCcccCC--CccccCCCCCC-------eEEEEECCCCC
Confidence 3467887777776 44554443222 36666776665
Done!