BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047363
(876 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1U2R|A Chain A, Crystal Structure Of Adp-Ribosylated Ribosomal Translocase
From Saccharomyces Cerevisiae
pdb|1ZM2|A Chain A, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM2|C Chain C, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM2|E Chain E, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM3|A Chain A, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM3|C Chain C, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM3|E Chain E, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM4|A Chain A, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM4|C Chain C, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM4|E Chain E, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM9|A Chain A, Structure Of Eef2-Eta In Complex With Pj34
pdb|1ZM9|C Chain C, Structure Of Eef2-Eta In Complex With Pj34
pdb|1ZM9|E Chain E, Structure Of Eef2-Eta In Complex With Pj34
pdb|2P8X|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-Eef2:gdpnp
Cryo-Em Reconstruction
pdb|2P8Y|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-
Eef2:gdp:sordarin Cryo-Em Reconstruction
pdb|2P8Z|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-
Eef2:gdpnp:sordarin Cryo-Em Reconstruction
pdb|3B78|A Chain A, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B78|C Chain C, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B78|E Chain E, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B82|A Chain A, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B82|C Chain C, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B82|E Chain E, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B8H|A Chain A, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|3B8H|C Chain C, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|3B8H|E Chain E, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|2ZIT|A Chain A, Structure Of The Eef2-Exoa-Nad+ Complex
pdb|2ZIT|C Chain C, Structure Of The Eef2-Exoa-Nad+ Complex
pdb|2ZIT|E Chain E, Structure Of The Eef2-Exoa-Nad+ Complex
Length = 842
Score = 372 bits (955), Expect = e-103, Method: Compositional matrix adjust.
Identities = 224/632 (35%), Positives = 351/632 (55%), Gaps = 95/632 (15%)
Query: 9 IRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIA 68
+RN+S++AHVDHGK+TL D L+ G++ AG+ RF D +EQ R IT+KS++I+
Sbjct: 19 VRNMSVIAHVDHGKSTLTDSLVQR--AGIISAAKAGEARFTDTRKDEQERGITIKSTAIS 76
Query: 69 LHYK----------------DYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVH 112
L+ + + INLIDSPGH+DF SEV+ A R++DGALV+VD +EGV
Sbjct: 77 LYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVC 136
Query: 113 IQTHAVLRQSWIEKLTPCLVLNKIDRLISELKLTPLEAYNRLLRIVHEVNGIMSAYKSEK 172
+QT VLRQ+ E++ P +V+NK+DR + EL+++ + Y R V VN I+S Y E
Sbjct: 137 VQTETVLRQALGERIKPVVVINKVDRALLELQVSKEDLYQTFARTVESVNVIVSTYADEV 196
Query: 173 YXXXXXXXXXXPSEKLGDENLQFIEDDEEDTFQPQKGNVAFVCGLDGWGFSISEFAEFYA 232
LGD + P +G VAF GL GW F+I +FA YA
Sbjct: 197 ---------------LGDVQVY-----------PARGTVAFGSGLHGWAFTIRQFATRYA 230
Query: 233 TKLGASTAALEKALWGPRYFNPKTKMIVGKKGISTGTKARPMFVQFVLEPLWQVYQAALE 292
K G A + LWG +FNPKTK K + G F F+L+P+++++ A +
Sbjct: 231 KKFGVDKAKMMDRLWGDSFFNPKTKKWTNKDTDAEGKPLERAFNMFILDPIFRLFTAIMN 290
Query: 293 PDGDK--GVLEKVIKSFNLSIPRRELQNKDPKAVLQAVLSHWLPLSDAILSMVVKCIPDP 350
D+ +LEK+ L ++L+ K A+L+ V+ +LP +DA+L M+V +P P
Sbjct: 291 FKKDEIPVLLEKL--EIVLKGDEKDLEGK---ALLKVVMRKFLPAADALLEMIVLHLPSP 345
Query: 351 ISAQSYRISRLLPKREILDNDVDCNVLTEADFVRKSVEVCNSSPEAPCVAFVSKMFAVPI 410
++AQ+YR +L E +D +C + + N P+A + +VSKM VP
Sbjct: 346 VTAQAYRAEQLY---EGPADDANC------------IAIKNCDPKADLMLYVSKM--VPT 388
Query: 411 KMLPQRGSNGEILDNYADKGGNGESEECFLAFARIFSGVLYSGQRVFVLSALYDPLKVES 470
+DKG F AF R+F+G + SGQ+V + Y P K +
Sbjct: 389 ----------------SDKGR-------FYAFGRVFAGTVKSGQKVRIQGPNYVPGKKDD 425
Query: 471 MQKHIQEAELQSLYLMMGQGLKPVASAKAGNVVAIRGLGQQILKSATLSSTRNCWPFSSM 530
+ I+ +Q + LMMG+ ++P+ AGN++ + G+ Q +LK+ TL+++ M
Sbjct: 426 L--FIKA--IQRVVLMMGRFVEPIDDCPAGNIIGLVGIDQFLLKTGTLTTSETAHNMKVM 481
Query: 531 VFQVSPTLRVAIEPSDPADMGALMKGLRLLNRADPFVEVSVSSRGENVLAAAGEVHLERC 590
F VSP ++VA+E + D+ L++GL+ L+++DP V +S GE+++A GE+HLE C
Sbjct: 482 KFSVSPVVQVAVEVKNANDLPKLVEGLKRLSKSDPCVLTYMSESGEHIVAGTGELHLEIC 541
Query: 591 IKDLKERFAKVSLEVSPPLVSYKETIEGDTSN 622
++DL+ A V L++SPP+V+Y+ET+E ++S
Sbjct: 542 LQDLEHDHAGVPLKISPPVVAYRETVESESSQ 573
>pdb|1N0V|C Chain C, Crystal Structure Of Elongation Factor 2
pdb|1N0V|D Chain D, Crystal Structure Of Elongation Factor 2
pdb|1N0U|A Chain A, Crystal Structure Of Yeast Elongation Factor 2 In Complex
With Sordarin
pdb|1S1H|T Chain T, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From
Yeast Obtained By Docking Atomic Models For Rna And
Protein Components Into A 11.7 A Cryo-Em Map. This File,
1s1h, Contains 40s Subunit. The 60s Ribosomal Subunit Is
In File 1s1i.
pdb|2E1R|A Chain A, Structure Of Eef2 In Complex With A Sordarin Derivative
pdb|2NPF|A Chain A, Structure Of Eef2 In Complex With Moriniafungin
pdb|2NPF|B Chain B, Structure Of Eef2 In Complex With Moriniafungin
pdb|2P8W|T Chain T, Fitted Structure Of Eef2 In The 80s:eef2:gdpnp Cryo-Em
Reconstruction
pdb|3DNY|T Chain T, Fitting Of The Eef2 Crystal Structure Into The Cryo-Em
Density Map Of The Eef2.80s.Alf4-.Gdp Complex
Length = 842
Score = 372 bits (955), Expect = e-103, Method: Compositional matrix adjust.
Identities = 224/632 (35%), Positives = 351/632 (55%), Gaps = 95/632 (15%)
Query: 9 IRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIA 68
+RN+S++AHVDHGK+TL D L+ G++ AG+ RF D +EQ R IT+KS++I+
Sbjct: 19 VRNMSVIAHVDHGKSTLTDSLVQR--AGIISAAKAGEARFTDTRKDEQERGITIKSTAIS 76
Query: 69 LHYK----------------DYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVH 112
L+ + + INLIDSPGH+DF SEV+ A R++DGALV+VD +EGV
Sbjct: 77 LYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVC 136
Query: 113 IQTHAVLRQSWIEKLTPCLVLNKIDRLISELKLTPLEAYNRLLRIVHEVNGIMSAYKSEK 172
+QT VLRQ+ E++ P +V+NK+DR + EL+++ + Y R V VN I+S Y E
Sbjct: 137 VQTETVLRQALGERIKPVVVINKVDRALLELQVSKEDLYQTFARTVESVNVIVSTYADEV 196
Query: 173 YXXXXXXXXXXPSEKLGDENLQFIEDDEEDTFQPQKGNVAFVCGLDGWGFSISEFAEFYA 232
LGD + P +G VAF GL GW F+I +FA YA
Sbjct: 197 ---------------LGDVQVY-----------PARGTVAFGSGLHGWAFTIRQFATRYA 230
Query: 233 TKLGASTAALEKALWGPRYFNPKTKMIVGKKGISTGTKARPMFVQFVLEPLWQVYQAALE 292
K G A + LWG +FNPKTK K + G F F+L+P+++++ A +
Sbjct: 231 KKFGVDKAKMMDRLWGDSFFNPKTKKWTNKDTDAEGKPLERAFNMFILDPIFRLFTAIMN 290
Query: 293 PDGDK--GVLEKVIKSFNLSIPRRELQNKDPKAVLQAVLSHWLPLSDAILSMVVKCIPDP 350
D+ +LEK+ L ++L+ K A+L+ V+ +LP +DA+L M+V +P P
Sbjct: 291 FKKDEIPVLLEKL--EIVLKGDEKDLEGK---ALLKVVMRKFLPAADALLEMIVLHLPSP 345
Query: 351 ISAQSYRISRLLPKREILDNDVDCNVLTEADFVRKSVEVCNSSPEAPCVAFVSKMFAVPI 410
++AQ+YR +L E +D +C + + N P+A + +VSKM VP
Sbjct: 346 VTAQAYRAEQLY---EGPADDANC------------IAIKNCDPKADLMLYVSKM--VPT 388
Query: 411 KMLPQRGSNGEILDNYADKGGNGESEECFLAFARIFSGVLYSGQRVFVLSALYDPLKVES 470
+DKG F AF R+F+G + SGQ+V + Y P K +
Sbjct: 389 ----------------SDKGR-------FYAFGRVFAGTVKSGQKVRIQGPNYVPGKKDD 425
Query: 471 MQKHIQEAELQSLYLMMGQGLKPVASAKAGNVVAIRGLGQQILKSATLSSTRNCWPFSSM 530
+ I+ +Q + LMMG+ ++P+ AGN++ + G+ Q +LK+ TL+++ M
Sbjct: 426 L--FIKA--IQRVVLMMGRFVEPIDDCPAGNIIGLVGIDQFLLKTGTLTTSETAHNMKVM 481
Query: 531 VFQVSPTLRVAIEPSDPADMGALMKGLRLLNRADPFVEVSVSSRGENVLAAAGEVHLERC 590
F VSP ++VA+E + D+ L++GL+ L+++DP V +S GE+++A GE+HLE C
Sbjct: 482 KFSVSPVVQVAVEVKNANDLPKLVEGLKRLSKSDPCVLTYMSESGEHIVAGTGELHLEIC 541
Query: 591 IKDLKERFAKVSLEVSPPLVSYKETIEGDTSN 622
++DL+ A V L++SPP+V+Y+ET+E ++S
Sbjct: 542 LQDLEHDHAGVPLKISPPVVAYRETVESESSQ 573
>pdb|2YWE|A Chain A, Crystal Structure Of Lepa From Aquifex Aeolicus
pdb|2YWF|A Chain A, Crystal Structure Of Gmppnp-Bound Lepa From Aquifex
Aeolicus
pdb|2YWH|A Chain A, Crystal Structure Of Gdp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 105 bits (262), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 85/261 (32%), Positives = 127/261 (48%), Gaps = 35/261 (13%)
Query: 5 DTRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKS 64
+ + +RN I+AHVDHGK+TLAD L+ TG K + + +D LD E+ R IT+K
Sbjct: 2 EQKNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREK---REQLLDTLDVERERGITVKM 58
Query: 65 SSIALHYK-----DYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVL 119
++ + YK Y ++LID+PGH+DF EVS A +GAL+L+DA +G+ QT A
Sbjct: 59 QAVRMFYKAKDGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANF 118
Query: 120 RQSWIEKLTPCLVLNKIDRLISELKLTPLEAYNRLLRIVHEVNG------IMSAYKS--- 170
++ + L V+NKID P +R+ + + EV G I+++ K
Sbjct: 119 WKAVEQDLVIIPVINKID--------LPSADVDRVKKQIEEVLGLDPEEAILASAKEGIG 170
Query: 171 -EKYXXXXXXXXXXPSEKLGDENLQFIEDDEEDTFQPQKGNVAFVCGLDGW---GFSI-- 224
E+ P GD + + P +G VAFV DG G I
Sbjct: 171 IEEILEAIVNRIPPPK---GDPQKPLKALIFDSYYDPYRGAVAFVRIFDGEVKPGDKIML 227
Query: 225 -SEFAEFYATKLGASTAALEK 244
S E+ T++GA T + K
Sbjct: 228 MSTGKEYEVTEVGAQTPKMTK 248
>pdb|3CB4|D Chain D, The Crystal Structure Of Lepa
pdb|3CB4|A Chain A, The Crystal Structure Of Lepa
pdb|3CB4|B Chain B, The Crystal Structure Of Lepa
pdb|3CB4|C Chain C, The Crystal Structure Of Lepa
pdb|3CB4|E Chain E, The Crystal Structure Of Lepa
pdb|3CB4|F Chain F, The Crystal Structure Of Lepa
Length = 599
Score = 103 bits (256), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 59/136 (43%), Positives = 84/136 (61%), Gaps = 8/136 (5%)
Query: 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSS 66
+ IRN SI+AH+DHGK+TL+D +I GG L ++ ++ +D +D E+ R IT+K+ S
Sbjct: 2 KNIRNFSIIAHIDHGKSTLSDRIIQICGG-LSDREMEAQV--LDSMDLERERGITIKAQS 58
Query: 67 IALHYK-----DYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQ 121
+ L YK Y +N ID+PGH+DF EVS + +GAL++VDA +GV QT A
Sbjct: 59 VTLDYKASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYT 118
Query: 122 SWIEKLTPCLVLNKID 137
+ L VLNKID
Sbjct: 119 AMEMDLEVVPVLNKID 134
>pdb|2YWG|A Chain A, Crystal Structure Of Gtp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 103 bits (256), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 62/165 (37%), Positives = 93/165 (56%), Gaps = 16/165 (9%)
Query: 5 DTRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKS 64
+ + +RN I+AHVDHGK+TLAD L+ TG K + + +D LD E+ R IT+K
Sbjct: 2 EQKNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREK---REQLLDTLDVERERGITVKX 58
Query: 65 SSIALHYK-----DYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVL 119
++ YK Y ++LID+PGH+DF EVS A +GAL+L+DA +G+ QT A
Sbjct: 59 QAVRXFYKAKDGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANF 118
Query: 120 RQSWIEKLTPCLVLNKIDRLISELKLTPLEAYNRLLRIVHEVNGI 164
++ + L V+NKID P +R+ + + EV G+
Sbjct: 119 WKAVEQDLVIIPVINKID--------LPSADVDRVKKQIEEVLGL 155
>pdb|3DEG|C Chain C, Complex Of Elongating Escherichia Coli 70s Ribosome And
Ef4(Lepa)- Gmppnp
Length = 545
Score = 103 bits (256), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 59/136 (43%), Positives = 84/136 (61%), Gaps = 8/136 (5%)
Query: 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSS 66
+ IRN SI+AH+DHGK+TL+D +I GG L ++ ++ +D +D E+ R IT+K+ S
Sbjct: 2 KNIRNFSIIAHIDHGKSTLSDRIIQICGG-LSDREMEAQV--LDSMDLERERGITIKAQS 58
Query: 67 IALHYK-----DYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQ 121
+ L YK Y +N ID+PGH+DF EVS + +GAL++VDA +GV QT A
Sbjct: 59 VTLDYKASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYT 118
Query: 122 SWIEKLTPCLVLNKID 137
+ L VLNKID
Sbjct: 119 AMEMDLEVVPVLNKID 134
>pdb|1FNM|A Chain A, Structure Of Thermus Thermophilus Ef-G H573a
pdb|1PN6|A Chain A, Domain-Wise Fitting Of The Crystal Structure Of
T.Thermophilus Ef-G Into The Low Resolution Map Of The
Release Complex.Puromycin.Efg.Gdpnp Of E.Coli 70s
Ribosome
Length = 691
Score = 102 bits (255), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 91/156 (58%), Gaps = 8/156 (5%)
Query: 3 DSDTRKIRNISILAHVDHGKTTLADHLIAATGG----GLLHPKLAGKLRFMDYLDEEQRR 58
+ D +++RNI I AH+D GKTT + ++ TG G +H A MD++++E+ R
Sbjct: 6 EYDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAA----TMDFMEQERER 61
Query: 59 AITMKSSSIALHYKDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAV 118
IT+ ++ +KD+ IN+ID+PGH+DF EV + R+ DGA+V+ D+ +GV Q+ V
Sbjct: 62 GITITAAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETV 121
Query: 119 LRQSWIEKLTPCLVLNKIDRLISELKLTPLEAYNRL 154
RQ+ K+ NK+D+ ++L L RL
Sbjct: 122 WRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERL 157
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 95/220 (43%), Gaps = 27/220 (12%)
Query: 409 PIKMLPQRGSN--GEILDNYADKGGN---------GESEECFLAFARIFSGVLYSGQRVF 457
P+ + P +G+ GE+++ + D G + L F R++SG L SG
Sbjct: 283 PLDIPPIKGTTPEGEVVEIHPDPNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSG---- 338
Query: 458 VLSALYDPLKVESMQKHIQEAELQSLYLMMGQGLKPVASAKAGNVVAIRGLGQQILKSAT 517
S +Y+ K ++ + L M + V KAG++ A+ GL + I
Sbjct: 339 --SYVYNTTKG-------RKERVARLLRMHANHREEVEELKAGDLGAVVGLKETITGDTL 389
Query: 518 LSSTRNCWPFSSMVFQVSPTLRVAIEPSDPADMGALMKGLRLLNRADPFVEVSVSSR-GE 576
+ S+ P + VAIEP AD L + L L DP VS G+
Sbjct: 390 VGEDAPRVILESIEVP-EPVIDVAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQ 448
Query: 577 NVLAAAGEVHLERCIKDLKERFAKVSLEVSPPLVSYKETI 616
+++ GE+HLE + LK F KV V P V+Y+ETI
Sbjct: 449 TIISGMGELHLEIIVDRLKREF-KVDANVGKPQVAYRETI 487
>pdb|3IZP|E Chain E, Conformation Of Ef-G During Translocation
Length = 688
Score = 102 bits (255), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 91/156 (58%), Gaps = 8/156 (5%)
Query: 3 DSDTRKIRNISILAHVDHGKTTLADHLIAATGG----GLLHPKLAGKLRFMDYLDEEQRR 58
+ D +++RNI I AH+D GKTT + ++ TG G +H A MD++++E+ R
Sbjct: 6 EYDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAA----TMDFMEQERER 61
Query: 59 AITMKSSSIALHYKDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAV 118
IT+ ++ +KD+ IN+ID+PGH+DF EV + R+ DGA+V+ D+ +GV Q+ V
Sbjct: 62 GITITAAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETV 121
Query: 119 LRQSWIEKLTPCLVLNKIDRLISELKLTPLEAYNRL 154
RQ+ K+ NK+D+ ++L L RL
Sbjct: 122 WRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERL 157
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 95/220 (43%), Gaps = 27/220 (12%)
Query: 409 PIKMLPQRGSN--GEILDNYADKGGN---------GESEECFLAFARIFSGVLYSGQRVF 457
P+ + P +G+ GE+++ + D G + L F R++SG L SG
Sbjct: 283 PLDIPPIKGTTPEGEVVEIHPDPNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSG---- 338
Query: 458 VLSALYDPLKVESMQKHIQEAELQSLYLMMGQGLKPVASAKAGNVVAIRGLGQQILKSAT 517
S +Y+ K ++ + L M + V KAG++ A+ GL + I
Sbjct: 339 --SYVYNTTKG-------RKERVARLLRMHANHREEVEELKAGDLGAVVGLKETITGDTL 389
Query: 518 LSSTRNCWPFSSMVFQVSPTLRVAIEPSDPADMGALMKGLRLLNRADPFVEVSVSSR-GE 576
+ S+ P + VAIEP AD L + L L DP VS G+
Sbjct: 390 VGEDAPRVILESIEVP-EPVIDVAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQ 448
Query: 577 NVLAAAGEVHLERCIKDLKERFAKVSLEVSPPLVSYKETI 616
+++ GE+HLE + LK F KV V P V+Y+ETI
Sbjct: 449 TIISGMGELHLEIIVDRLKREF-KVDANVGKPQVAYRETI 487
>pdb|2BV3|A Chain A, Crystal Structure Of A Mutant Elongation Factor G Trapped
With A Gtp Analogue
Length = 691
Score = 102 bits (255), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 91/156 (58%), Gaps = 8/156 (5%)
Query: 3 DSDTRKIRNISILAHVDHGKTTLADHLIAATGG----GLLHPKLAGKLRFMDYLDEEQRR 58
+ D +++RNI I AH+D GKTT + ++ TG G +H A MD++++E+ R
Sbjct: 6 EYDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAA----TMDFMEQERER 61
Query: 59 AITMKSSSIALHYKDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAV 118
IT+ ++ +KD+ IN+ID+PGH+DF EV + R+ DGA+V+ D+ +GV Q+ V
Sbjct: 62 GITITAAVTTCFWKDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETV 121
Query: 119 LRQSWIEKLTPCLVLNKIDRLISELKLTPLEAYNRL 154
RQ+ K+ NK+D+ ++L L RL
Sbjct: 122 WRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERL 157
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 92/220 (41%), Gaps = 27/220 (12%)
Query: 409 PIKMLPQRGSN--GEILDNYADKGGN---------GESEECFLAFARIFSGVLYSGQRVF 457
P+ + P +G+ GE+++ + D G + L F R++SG L SG
Sbjct: 283 PLDIPPIKGTTPEGEVVEIHPDPNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSG---- 338
Query: 458 VLSALYDPLKVESMQKHIQEAELQSLYLMMGQGLKPVASAKAGNVVAIRGLGQQILKSAT 517
S +Y+ K ++ + L M + V KAG++ A+ GL + I
Sbjct: 339 --SYVYNTTKG-------RKERVARLLRMHANHREEVEELKAGDLGAVVGLKETITGDTL 389
Query: 518 LSSTRNCWPFSSMVFQVSPTLRVAIEPSDPADMGALMKGLRLLNRADPFVEVSVSSR-GE 576
+ S+ P + VAIEP AD L + L L P VS G
Sbjct: 390 VGEDAPRVILESIEVP-EPVIDVAIEPKTKADQEKLSQALARLAEESPTFSVSTHPETGS 448
Query: 577 NVLAAAGEVHLERCIKDLKERFAKVSLEVSPPLVSYKETI 616
+++ GE+ LE + LK F KV V P V+Y+ETI
Sbjct: 449 TIISGMGELSLEIIVDRLKREF-KVDANVGKPQVAYRETI 487
>pdb|1EFG|A Chain A, The Crystal Structure Of Elongation Factor G Complexed
With Gdp, At 2.7 Angstroms Resolution
pdb|2EFG|A Chain A, Translational Elongation Factor G Complexed With Gdp
pdb|1JQM|B Chain B, Fitting Of L11 Protein And Elongation Factor G (Ef-G) In
The Cryo-Em Map Of E. Coli 70s Ribosome Bound With Ef-G,
Gdp And Fusidic Acid
Length = 691
Score = 102 bits (255), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 91/156 (58%), Gaps = 8/156 (5%)
Query: 3 DSDTRKIRNISILAHVDHGKTTLADHLIAATGG----GLLHPKLAGKLRFMDYLDEEQRR 58
+ D +++RNI I AH+D GKTT + ++ TG G +H A MD++++E+ R
Sbjct: 6 EYDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAA----TMDFMEQERER 61
Query: 59 AITMKSSSIALHYKDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAV 118
IT+ ++ +KD+ IN+ID+PGH+DF EV + R+ DGA+V+ D+ +GV Q+ V
Sbjct: 62 GITITAAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETV 121
Query: 119 LRQSWIEKLTPCLVLNKIDRLISELKLTPLEAYNRL 154
RQ+ K+ NK+D+ ++L L RL
Sbjct: 122 WRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERL 157
Score = 66.2 bits (160), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 95/220 (43%), Gaps = 27/220 (12%)
Query: 409 PIKMLPQRGSN--GEILDNYADKGGN---------GESEECFLAFARIFSGVLYSGQRVF 457
P+ + P +G+ GE+++ + D G + L F R++SG L SG
Sbjct: 283 PLDIPPIKGTTPEGEVVEIHPDPNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSG---- 338
Query: 458 VLSALYDPLKVESMQKHIQEAELQSLYLMMGQGLKPVASAKAGNVVAIRGLGQQILKSAT 517
S +Y+ K ++ + L M + V KAG++ A+ GL + I
Sbjct: 339 --SYVYNTTKG-------RKERVARLLRMHANHREEVEELKAGDLGAVVGLKETITGDTL 389
Query: 518 LSSTRNCWPFSSMVFQVSPTLRVAIEPSDPADMGALMKGLRLLNRADPFVEVSVSSR-GE 576
+ S+ P + VAIEP AD L + L L DP VS G+
Sbjct: 390 VGEDAPRVILESIEVP-EPVIDVAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQ 448
Query: 577 NVLAAAGEVHLERCIKDLKERFAKVSLEVSPPLVSYKETI 616
+++ GE+HLE + LK F KV V P V+Y+ETI
Sbjct: 449 TIISGMGELHLEIIVDRLKREF-KVDANVGKPQVAYRETI 487
>pdb|1KTV|A Chain A, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1KTV|B Chain B, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1DAR|A Chain A, Elongation Factor G In Complex With Gdp
pdb|1ELO|A Chain A, Elongation Factor G Without Nucleotide
pdb|2OM7|L Chain L, Structural Basis For Interaction Of The Ribosome With The
Switch Regions Of Gtp-Bound Elongation Factors
pdb|2WRI|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 1 Of 4).
pdb|2WRK|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 3 Of 4).
pdb|2XSY|Y Chain Y, Trna Tranlocation On The 70s Ribosome: The Pre-
Translocational Translocation Intermediate Ti(Pre)
pdb|2XUY|Y Chain Y, Trna Translocation On The 70s Ribosome: The Post-
Translocational Translocation Intermediate Ti(Post)
pdb|3J18|Y Chain Y, Structure Of The Bacterial Ribosome Complexed By
Tmrna-Smpb And Ef-G During Translocation And Mld-Loading
(30s Subunit)
Length = 691
Score = 102 bits (255), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 91/156 (58%), Gaps = 8/156 (5%)
Query: 3 DSDTRKIRNISILAHVDHGKTTLADHLIAATGG----GLLHPKLAGKLRFMDYLDEEQRR 58
+ D +++RNI I AH+D GKTT + ++ TG G +H A MD++++E+ R
Sbjct: 6 EYDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAA----TMDFMEQERER 61
Query: 59 AITMKSSSIALHYKDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAV 118
IT+ ++ +KD+ IN+ID+PGH+DF EV + R+ DGA+V+ D+ +GV Q+ V
Sbjct: 62 GITITAAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETV 121
Query: 119 LRQSWIEKLTPCLVLNKIDRLISELKLTPLEAYNRL 154
RQ+ K+ NK+D+ ++L L RL
Sbjct: 122 WRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERL 157
Score = 65.9 bits (159), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 95/220 (43%), Gaps = 27/220 (12%)
Query: 409 PIKMLPQRGSN--GEILDNYADKGGN---------GESEECFLAFARIFSGVLYSGQRVF 457
P+ + P +G+ GE+++ + D G + L F R++SG L SG
Sbjct: 283 PLDIPPIKGTTPEGEVVEIHPDPNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSG---- 338
Query: 458 VLSALYDPLKVESMQKHIQEAELQSLYLMMGQGLKPVASAKAGNVVAIRGLGQQILKSAT 517
S +Y+ K ++ + L M + V KAG++ A+ GL + I
Sbjct: 339 --SYVYNTTKG-------RKERVARLLRMHANHREEVEELKAGDLGAVVGLKETITGDTL 389
Query: 518 LSSTRNCWPFSSMVFQVSPTLRVAIEPSDPADMGALMKGLRLLNRADPFVEVSVSSR-GE 576
+ S+ P + VAIEP AD L + L L DP VS G+
Sbjct: 390 VGEDAPRVILESIEVP-EPVIDVAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQ 448
Query: 577 NVLAAAGEVHLERCIKDLKERFAKVSLEVSPPLVSYKETI 616
+++ GE+HLE + LK F KV V P V+Y+ETI
Sbjct: 449 TIISGMGELHLEIIVDRLKREF-KVDANVGKPQVAYRETI 487
>pdb|2J7K|A Chain A, Crystal Structure Of The T84a Mutant Ef-G:gdpcp Complex
Length = 691
Score = 102 bits (254), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 91/156 (58%), Gaps = 8/156 (5%)
Query: 3 DSDTRKIRNISILAHVDHGKTTLADHLIAATGG----GLLHPKLAGKLRFMDYLDEEQRR 58
+ D +++RNI I AH+D GKTT + ++ TG G +H A MD++++E+ R
Sbjct: 6 EYDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAA----TMDFMEQERER 61
Query: 59 AITMKSSSIALHYKDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAV 118
IT+ ++ +KD+ IN+ID+PGH+DF EV + R+ DGA+V+ D+ +GV Q+ V
Sbjct: 62 GITITAAVTTCFWKDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETV 121
Query: 119 LRQSWIEKLTPCLVLNKIDRLISELKLTPLEAYNRL 154
RQ+ K+ NK+D+ ++L L RL
Sbjct: 122 WRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERL 157
Score = 65.9 bits (159), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 95/220 (43%), Gaps = 27/220 (12%)
Query: 409 PIKMLPQRGSN--GEILDNYADKGGN---------GESEECFLAFARIFSGVLYSGQRVF 457
P+ + P +G+ GE+++ + D G + L F R++SG L SG
Sbjct: 283 PLDIPPIKGTTPEGEVVEIHPDPNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSG---- 338
Query: 458 VLSALYDPLKVESMQKHIQEAELQSLYLMMGQGLKPVASAKAGNVVAIRGLGQQILKSAT 517
S +Y+ K ++ + L M + V KAG++ A+ GL + I
Sbjct: 339 --SYVYNTTKG-------RKERVARLLRMHANHREEVEELKAGDLGAVVGLKETITGDTL 389
Query: 518 LSSTRNCWPFSSMVFQVSPTLRVAIEPSDPADMGALMKGLRLLNRADPFVEVSVSSR-GE 576
+ S+ P + VAIEP AD L + L L DP VS G+
Sbjct: 390 VGEDAPRVILESIEVP-EPVIDVAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQ 448
Query: 577 NVLAAAGEVHLERCIKDLKERFAKVSLEVSPPLVSYKETI 616
+++ GE+HLE + LK F KV V P V+Y+ETI
Sbjct: 449 TIISGMGELHLEIIVDRLKREF-KVDANVGKPQVAYRETI 487
>pdb|2BM1|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant G16v
Length = 691
Score = 102 bits (253), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 91/156 (58%), Gaps = 8/156 (5%)
Query: 3 DSDTRKIRNISILAHVDHGKTTLADHLIAATGG----GLLHPKLAGKLRFMDYLDEEQRR 58
+ D +++RNI I AH+D GKTT + ++ TG G +H A MD++++E+ R
Sbjct: 6 EYDLKRLRNIVIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAA----TMDFMEQERER 61
Query: 59 AITMKSSSIALHYKDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAV 118
IT+ ++ +KD+ IN+ID+PGH+DF EV + R+ DGA+V+ D+ +GV Q+ V
Sbjct: 62 GITITAAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETV 121
Query: 119 LRQSWIEKLTPCLVLNKIDRLISELKLTPLEAYNRL 154
RQ+ K+ NK+D+ ++L L RL
Sbjct: 122 WRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERL 157
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 95/220 (43%), Gaps = 27/220 (12%)
Query: 409 PIKMLPQRGSN--GEILDNYADKGGN---------GESEECFLAFARIFSGVLYSGQRVF 457
P+ + P +G+ GE+++ + D G + L F R++SG L SG
Sbjct: 283 PLDIPPIKGTTPEGEVVEIHPDPNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSG---- 338
Query: 458 VLSALYDPLKVESMQKHIQEAELQSLYLMMGQGLKPVASAKAGNVVAIRGLGQQILKSAT 517
S +Y+ K ++ + L M + V KAG++ A+ GL + I
Sbjct: 339 --SYVYNTTKG-------RKERVARLLRMHANHREEVEELKAGDLGAVVGLKETITGDTL 389
Query: 518 LSSTRNCWPFSSMVFQVSPTLRVAIEPSDPADMGALMKGLRLLNRADPFVEVSVSSR-GE 576
+ S+ P + VAIEP AD L + L L DP VS G+
Sbjct: 390 VGEDAPRVILESIEVP-EPVIDVAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQ 448
Query: 577 NVLAAAGEVHLERCIKDLKERFAKVSLEVSPPLVSYKETI 616
+++ GE+HLE + LK F KV V P V+Y+ETI
Sbjct: 449 TIISGMGELHLEIIVDRLKREF-KVDANVGKPQVAYRETI 487
>pdb|2BM0|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant T84a
Length = 691
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 89/152 (58%)
Query: 3 DSDTRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITM 62
+ D +++RNI I AH+D GKTT + ++ TG ++ MD++++E+ R IT+
Sbjct: 6 EYDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIAEVHEGAATMDFMEQERERGITI 65
Query: 63 KSSSIALHYKDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQS 122
++ +KD+ IN+ID+PGH+DF EV + R+ DGA+V+ D+ +GV Q+ V RQ+
Sbjct: 66 TAAVTTCFWKDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQA 125
Query: 123 WIEKLTPCLVLNKIDRLISELKLTPLEAYNRL 154
K+ NK+D+ ++L L RL
Sbjct: 126 EKYKVPRIAFANKMDKTGADLWLVIRTMQERL 157
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 95/220 (43%), Gaps = 27/220 (12%)
Query: 409 PIKMLPQRGSN--GEILDNYADKGGN---------GESEECFLAFARIFSGVLYSGQRVF 457
P+ + P +G+ GE+++ + D G + L F R++SG L SG
Sbjct: 283 PLDIPPIKGTTPEGEVVEIHPDPNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSG---- 338
Query: 458 VLSALYDPLKVESMQKHIQEAELQSLYLMMGQGLKPVASAKAGNVVAIRGLGQQILKSAT 517
S +Y+ K ++ + L M + V KAG++ A+ GL + I
Sbjct: 339 --SYVYNTTKG-------RKERVARLLRMHANHREEVEELKAGDLGAVVGLKETITGDTL 389
Query: 518 LSSTRNCWPFSSMVFQVSPTLRVAIEPSDPADMGALMKGLRLLNRADPFVEVSVSSR-GE 576
+ S+ P + VAIEP AD L + L L DP VS G+
Sbjct: 390 VGEDAPRVILESIEVP-EPVIDVAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQ 448
Query: 577 NVLAAAGEVHLERCIKDLKERFAKVSLEVSPPLVSYKETI 616
+++ GE+HLE + LK F KV V P V+Y+ETI
Sbjct: 449 TIISGMGELHLEIIVDRLKREF-KVDANVGKPQVAYRETI 487
>pdb|3J0E|H Chain H, Models For The T. Thermophilus Ribosome Recycling Factor
And The E. Coli Elongation Factor G Bound To The E. Coli
Post-Termination Complex
Length = 702
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 81/139 (58%), Gaps = 7/139 (5%)
Query: 8 KIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKS--- 64
+ RNI I AH+D GKTT + ++ TG ++ MD++++EQ R IT+ S
Sbjct: 8 RYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAAT 67
Query: 65 ----SSIALHYKDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLR 120
S +A Y+ + IN+ID+PGH+DF EV + R+ DGA+++ AV GV Q+ V R
Sbjct: 68 TAFWSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWR 127
Query: 121 QSWIEKLTPCLVLNKIDRL 139
Q+ K+ +NK+DR+
Sbjct: 128 QANKYKVPRIAFVNKMDRM 146
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 78/182 (42%), Gaps = 25/182 (13%)
Query: 440 LAFARIFSGVLYSGQRVFVLSALYDPLKVESMQKHIQEAELQSLYLMMGQGLKPVASAKA 499
L F R++SGV+ SG V + K +E + M + + +A
Sbjct: 332 LTFFRVYSGVVNSGDTVL------------NSVKAARE-RFGRIVQMHANKREEIKEVRA 378
Query: 500 GNVVAIRGLGQQILKSATLSSTRNCWPFSSMVFQV----SPTLRVAIEPSDPADMGALMK 555
G++ A GL K T T C P + ++ + P + +A+EP AD +
Sbjct: 379 GDIAAAIGL-----KDVTTGDTL-CDPDAPIILERMEFPEPVISIAVEPKTKADQEKMGL 432
Query: 556 GLRLLNRADPFVEV-SVSSRGENVLAAAGEVHLERCIKDLKERFAKVSLEVSPPLVSYKE 614
L L + DP V + + ++A GE+HL+ + +K F V V P V+Y+E
Sbjct: 433 ALGRLAKEDPSFRVWTDEESNQTIIAGMGELHLDIIVDRMKREF-NVEANVGKPQVAYRE 491
Query: 615 TI 616
TI
Sbjct: 492 TI 493
>pdb|2RDO|7 Chain 7, 50s Subunit With Ef-G(Gdpnp) And Rrf Bound
Length = 704
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 81/139 (58%), Gaps = 7/139 (5%)
Query: 8 KIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKS--- 64
+ RNI I AH+D GKTT + ++ TG ++ MD++++EQ R IT+ S
Sbjct: 9 RYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAAT 68
Query: 65 ----SSIALHYKDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLR 120
S +A Y+ + IN+ID+PGH+DF EV + R+ DGA+++ AV GV Q+ V R
Sbjct: 69 TAFWSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWR 128
Query: 121 QSWIEKLTPCLVLNKIDRL 139
Q+ K+ +NK+DR+
Sbjct: 129 QANKYKVPRIAFVNKMDRM 147
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 78/182 (42%), Gaps = 25/182 (13%)
Query: 440 LAFARIFSGVLYSGQRVFVLSALYDPLKVESMQKHIQEAELQSLYLMMGQGLKPVASAKA 499
L F R++SGV+ SG V + K +E + M + + +A
Sbjct: 333 LTFFRVYSGVVNSGDTVL------------NSVKAARE-RFGRIVQMHANKREEIKEVRA 379
Query: 500 GNVVAIRGLGQQILKSATLSSTRNCWPFSSMVFQV----SPTLRVAIEPSDPADMGALMK 555
G++ A GL K T T C P + ++ + P + +A+EP AD +
Sbjct: 380 GDIAAAIGL-----KDVTTGDTL-CDPDAPIILERMEFPEPVISIAVEPKTKADQEKMGL 433
Query: 556 GLRLLNRADPFVEV-SVSSRGENVLAAAGEVHLERCIKDLKERFAKVSLEVSPPLVSYKE 614
L L + DP V + + ++A GE+HL+ + +K F V V P V+Y+E
Sbjct: 434 ALGRLAKEDPSFRVWTDEESNQTIIAGMGELHLDIIVDRMKREF-NVEANVGKPQVAYRE 492
Query: 615 TI 616
TI
Sbjct: 493 TI 494
>pdb|2XEX|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G
pdb|2XEX|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G
Length = 693
Score = 92.4 bits (228), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 89/151 (58%), Gaps = 8/151 (5%)
Query: 8 KIRNISILAHVDHGKTTLADHLIAATGG----GLLHPKLAGKLRFMDYLDEEQRRAITMK 63
K RNI I+AH+D GKTT + ++ TG G H + MD++++EQ R IT+
Sbjct: 9 KTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQ----MDWMEQEQDRGITIT 64
Query: 64 SSSIALHYKDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSW 123
S++ ++ + +N+ID+PGH+DF EV + R+ DGA+ ++DA GV QT V RQ+
Sbjct: 65 SAATTAAWEGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQAT 124
Query: 124 IEKLTPCLVLNKIDRLISELKLTPLEAYNRL 154
+ + +NK+D+L + + + ++RL
Sbjct: 125 TYGVPRIVFVNKMDKLGANFEYSVSTLHDRL 155
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 76/179 (42%), Gaps = 17/179 (9%)
Query: 440 LAFARIFSGVLYSGQRVFVLSALYDPLKVESMQKHIQEAELQSLYLMMGQGLKPVASAKA 499
L F R++SG + SG V K + K + L ++ Q + V S
Sbjct: 325 LTFFRVYSGTMTSGSYV----------KNSTKGKRERVGRLLQMHANSRQEIDTVYSGDI 374
Query: 500 GNVVAIRGLGQQILKSATLSSTRNCWPFSSMVFQVSPTLRVAIEPSDPADMGALMKGLRL 559
V ++ G TL +N SM F P + +++EP AD + + L
Sbjct: 375 AAAVGLKDTG----TGDTLCGEKNDIILESMEFP-EPVIHLSVEPKSKADQDKMTQALVK 429
Query: 560 LNRADP-FVEVSVSSRGENVLAAAGEVHLERCIKDLKERFAKVSLEVSPPLVSYKETIE 617
L DP F + G+ ++ GE+HL+ + +K+ F V V P+VSY+ET +
Sbjct: 430 LQEEDPTFHAHTDEETGQVIIGGMGELHLDILVDRMKKEF-NVECNVGAPMVSYRETFK 487
>pdb|3ZZ0|A Chain A, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
pdb|3ZZ0|B Chain B, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
Length = 693
Score = 92.4 bits (228), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 89/151 (58%), Gaps = 8/151 (5%)
Query: 8 KIRNISILAHVDHGKTTLADHLIAATGG----GLLHPKLAGKLRFMDYLDEEQRRAITMK 63
K RNI I+AH+D GKTT + ++ TG G H + MD++++EQ R IT+
Sbjct: 9 KTRNIGIIAHIDAGKTTTTERILYYTGRIHKIGETHEGASQ----MDWMEQEQDRGITIT 64
Query: 64 SSSIALHYKDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSW 123
S++ ++ + +N+ID+PGH+DF EV + R+ DGA+ ++DA GV QT V RQ+
Sbjct: 65 SAATTAAWEGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQAT 124
Query: 124 IEKLTPCLVLNKIDRLISELKLTPLEAYNRL 154
+ + +NK+D+L + + + ++RL
Sbjct: 125 TYGVPRIVFVNKMDKLGANFEYSVSTLHDRL 155
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 76/179 (42%), Gaps = 17/179 (9%)
Query: 440 LAFARIFSGVLYSGQRVFVLSALYDPLKVESMQKHIQEAELQSLYLMMGQGLKPVASAKA 499
L F R++SG + SG V K + K + L ++ Q + V S
Sbjct: 325 LTFFRVYSGTMTSGSYV----------KNSTKGKRERVGRLLQMHANSRQEIDTVYSGDI 374
Query: 500 GNVVAIRGLGQQILKSATLSSTRNCWPFSSMVFQVSPTLRVAIEPSDPADMGALMKGLRL 559
V ++ G TL +N SM F P + +++EP AD + + L
Sbjct: 375 AAAVGLKDTG----TGDTLCGEKNDIILESMEFP-EPVIHLSVEPKSKADQDKMTQALVK 429
Query: 560 LNRADP-FVEVSVSSRGENVLAAAGEVHLERCIKDLKERFAKVSLEVSPPLVSYKETIE 617
L DP F + G+ ++ GE+HL+ + +K+ F V V P+VSY+ET +
Sbjct: 430 LQEEDPTFHAHTDEETGQVIIGGMGELHLDILVDRMKKEF-NVECNVGAPMVSYRETFK 487
>pdb|3ZZT|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With A Fusidic-Acid-Resistant Mutation F88l
pdb|3ZZT|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With A Fusidic-Acid-Resistant Mutation F88l
Length = 693
Score = 89.7 bits (221), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 88/151 (58%), Gaps = 8/151 (5%)
Query: 8 KIRNISILAHVDHGKTTLADHLIAATGG----GLLHPKLAGKLRFMDYLDEEQRRAITMK 63
K RNI I+AH+D GKTT + ++ TG G H + MD++++EQ R IT+
Sbjct: 9 KTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQ----MDWMEQEQDRGITIT 64
Query: 64 SSSIALHYKDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSW 123
S++ ++ + +N+ID+PGH+D EV + R+ DGA+ ++DA GV QT V RQ+
Sbjct: 65 SAATTAAWEGHRVNIIDTPGHVDLTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQAT 124
Query: 124 IEKLTPCLVLNKIDRLISELKLTPLEAYNRL 154
+ + +NK+D+L + + + ++RL
Sbjct: 125 TYGVPRIVFVNKMDKLGANFEYSVSTLHDRL 155
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 76/179 (42%), Gaps = 17/179 (9%)
Query: 440 LAFARIFSGVLYSGQRVFVLSALYDPLKVESMQKHIQEAELQSLYLMMGQGLKPVASAKA 499
L F R++SG + SG V K + K + L ++ Q + V S
Sbjct: 325 LTFFRVYSGTMTSGSYV----------KNSTKGKRERVGRLLQMHANSRQEIDTVYSGDI 374
Query: 500 GNVVAIRGLGQQILKSATLSSTRNCWPFSSMVFQVSPTLRVAIEPSDPADMGALMKGLRL 559
V ++ G TL +N SM F P + +++EP AD + + L
Sbjct: 375 AAAVGLKDTG----TGDTLCGEKNDIILESMEFP-EPVIHLSVEPKSKADQDKMTQALVK 429
Query: 560 LNRADP-FVEVSVSSRGENVLAAAGEVHLERCIKDLKERFAKVSLEVSPPLVSYKETIE 617
L DP F + G+ ++ GE+HL+ + +K+ F V V P+VSY+ET +
Sbjct: 430 LQEEDPTFHAHTDEETGQVIIGGMGELHLDILVDRMKKEF-NVECNVGAPMVSYRETFK 487
>pdb|3ZZU|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
pdb|3ZZU|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
Length = 693
Score = 89.7 bits (221), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 88/151 (58%), Gaps = 8/151 (5%)
Query: 8 KIRNISILAHVDHGKTTLADHLIAATGG----GLLHPKLAGKLRFMDYLDEEQRRAITMK 63
K RNI I+AH+D GKTT + ++ TG G H + MD++++EQ R IT+
Sbjct: 9 KTRNIGIIAHIDAGKTTTTERILYYTGRIHKIGETHEGASQ----MDWMEQEQDRGITIT 64
Query: 64 SSSIALHYKDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSW 123
S++ ++ + +N+ID+PGH+D EV + R+ DGA+ ++DA GV QT V RQ+
Sbjct: 65 SAATTAAWEGHRVNIIDTPGHVDLTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQAT 124
Query: 124 IEKLTPCLVLNKIDRLISELKLTPLEAYNRL 154
+ + +NK+D+L + + + ++RL
Sbjct: 125 TYGVPRIVFVNKMDKLGANFEYSVSTLHDRL 155
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 76/179 (42%), Gaps = 17/179 (9%)
Query: 440 LAFARIFSGVLYSGQRVFVLSALYDPLKVESMQKHIQEAELQSLYLMMGQGLKPVASAKA 499
L F R++SG + SG V K + K + L ++ Q + V S
Sbjct: 325 LTFFRVYSGTMTSGSYV----------KNSTKGKRERVGRLLQMHANSRQEIDTVYSGDI 374
Query: 500 GNVVAIRGLGQQILKSATLSSTRNCWPFSSMVFQVSPTLRVAIEPSDPADMGALMKGLRL 559
V ++ G TL +N SM F P + +++EP AD + + L
Sbjct: 375 AAAVGLKDTG----TGDTLCGEKNDIILESMEFP-EPVIHLSVEPKSKADQDKMTQALVK 429
Query: 560 LNRADP-FVEVSVSSRGENVLAAAGEVHLERCIKDLKERFAKVSLEVSPPLVSYKETIE 617
L DP F + G+ ++ GE+HL+ + +K+ F V V P+VSY+ET +
Sbjct: 430 LQEEDPTFHAHTDEETGQVIIGGMGELHLDILVDRMKKEF-NVECNVGAPMVSYRETFK 487
>pdb|4FN5|A Chain A, Elongation Factor G 1 (Pseudomonas Aeruginosa) In Complex
With Argyrin B
Length = 709
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 76/138 (55%), Gaps = 7/138 (5%)
Query: 8 KIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSI 67
+ RNI I AHVD GKTT + ++ TG ++ D++ +EQ R IT+ S+++
Sbjct: 12 RYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAV 71
Query: 68 AL-------HYKDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLR 120
Y +Y +N+ID+PGH+DF EV + R+ DGA+V+ GV Q+ V R
Sbjct: 72 TTFWKGSRGQYDNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWR 131
Query: 121 QSWIEKLTPCLVLNKIDR 138
Q+ + + +NK+DR
Sbjct: 132 QANKYGVPRIVYVNKMDR 149
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 92/211 (43%), Gaps = 23/211 (10%)
Query: 440 LAFARIFSGVLYSGQRVFVLSALYDPLKVESMQKHIQEAELQSLYLMMGQGLKPVASAKA 499
L FAR++SGVL SG VL+++ K E + + +Q M + + +A
Sbjct: 336 LTFARVYSGVLSSGDS--VLNSVKG--KKERVGRMVQ---------MHANQREEIKEVRA 382
Query: 500 GNVVAIRGLGQQILKSATLSSTRNCWPFSSMVFQVSPTLRVAIEPSDPADMGALMKGLRL 559
G++ A+ G+ + + TL S M F P + VA+EP AD + L
Sbjct: 383 GDIAALIGM-KDVTTGDTLCSIEKPIILERMDFP-EPVISVAVEPKTKADQEKMGIALGK 440
Query: 560 LNRADPFVEVSVSSR-GENVLAAAGEVHLERCIKDLKERFAKVSLEVSPPLVSYKETIEG 618
L + DP V G+ +++ GE+HL+ + +K F V + P V+Y+ETI
Sbjct: 441 LAQEDPSFRVKTDEESGQTIISGMGELHLDIIVDRMKREFG-VEANIGKPQVAYRETITK 499
Query: 619 DTSNPLQNVILLSGSSDYFEKTTPNGRCVVR 649
D + SG F G C +R
Sbjct: 500 DNVEIEGKFVRQSGGRGQF------GHCWIR 524
>pdb|3J25|A Chain A, Structural Basis For Tetm-Mediated Tetracycline Resistance
Length = 638
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 75/132 (56%), Gaps = 2/132 (1%)
Query: 8 KIRNISILAHVDHGKTTLADHLIAATGG-GLLHPKLAGKLRFMDYLDEEQRRAITMKSSS 66
KI NI +LAHVD GKTTL + L+ +G L G R + L E QR IT+++
Sbjct: 1 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQR-GITIQTGI 59
Query: 67 IALHYKDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEK 126
+ +++ +N+ID+PGHMDF +EV + + DGA++L+ A +GV QT +
Sbjct: 60 TSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMG 119
Query: 127 LTPCLVLNKIDR 138
+ +NKID+
Sbjct: 120 IPTIFFINKIDQ 131
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 85/188 (45%), Gaps = 26/188 (13%)
Query: 440 LAFARIFSGVLYSGQRVFVLSALYDPLKVESMQKHIQEAELQSLYLMMGQGLKPVASAKA 499
LA+ R++SGVL+ L D ++V +K ++ +Y + L + A +
Sbjct: 264 LAYIRLYSGVLH----------LRDSVRVSEKEK----IKVTEMYTSINGELCKIDRAYS 309
Query: 500 GNVVAIRGLGQQILKSATLSSTRNCWPFSSMVFQVSPTLRVAIEPSDPADMGALMKGLRL 559
G +V ++ + LK ++ P + P L+ +EPS P L+ L
Sbjct: 310 GEIVILQN---EFLKLNSVLGDTKLLPQRKKIENPHPLLQTTVEPSKPEQREMLLDALLE 366
Query: 560 LNRADPFVEVSV-SSRGENVLAAAGEVHLERCIKDLKERFAKVSLEVSPPLVSYKETIEG 618
++ +DP + V S+ E +L+ G+V +E L+E++ V +E+ P V Y E
Sbjct: 367 ISDSDPLLRYYVDSTTHEIILSFLGKVQMEVISALLQEKY-HVEIELKEPTVIYME---- 421
Query: 619 DTSNPLQN 626
PL+N
Sbjct: 422 ---RPLKN 426
>pdb|1ZN0|B Chain B, Coordinates Of Rrf And Ef-G Fitted Into Cryo-Em Map Of The
50s Subunit Bound With Both Ef-G (Gdpnp) And Rrf
Length = 655
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 77/152 (50%), Gaps = 28/152 (18%)
Query: 3 DSDTRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITM 62
+ D +++RNI I AH+D GKTT + ++ TG R A+T
Sbjct: 1 EYDLKRLRNIGIAAHIDAGKTTTTERILYYTG----------------------RIAVT- 37
Query: 63 KSSSIALHYKDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQS 122
+KD+ IN+ID+PGH+DF EV + R+ DGA+V+ D+ +GV Q+ V RQ+
Sbjct: 38 -----TCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQA 92
Query: 123 WIEKLTPCLVLNKIDRLISELKLTPLEAYNRL 154
K+ NK+D+ ++L L RL
Sbjct: 93 EKYKVPRIAFANKMDKTGADLWLVIRTMQERL 124
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 95/220 (43%), Gaps = 27/220 (12%)
Query: 409 PIKMLPQRGSN--GEILDNYADKGGN---------GESEECFLAFARIFSGVLYSGQRVF 457
P+ + P +G+ GE+++ + D G + L F R++SG L SG
Sbjct: 250 PLDIPPIKGTTPEGEVVEIHPDPNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSG---- 305
Query: 458 VLSALYDPLKVESMQKHIQEAELQSLYLMMGQGLKPVASAKAGNVVAIRGLGQQILKSAT 517
S +Y+ K ++ + L M + V KAG++ A+ GL + I
Sbjct: 306 --SYVYNTTKG-------RKERVARLLRMHANHREEVEELKAGDLGAVVGLKETITGDTL 356
Query: 518 LSSTRNCWPFSSMVFQVSPTLRVAIEPSDPADMGALMKGLRLLNRADPFVEVSVSSR-GE 576
+ S+ P + VAIEP AD L + L L DP VS G+
Sbjct: 357 VGEDAPRVILESIEVP-EPVIDVAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQ 415
Query: 577 NVLAAAGEVHLERCIKDLKERFAKVSLEVSPPLVSYKETI 616
+++ GE+HLE + LK F KV V P V+Y+ETI
Sbjct: 416 TIISGMGELHLEIIVDRLKREF-KVDANVGKPQVAYRETI 454
>pdb|3TR5|A Chain A, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|B Chain B, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|C Chain C, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|D Chain D, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
Length = 528
Score = 77.4 bits (189), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 70/140 (50%), Gaps = 4/140 (2%)
Query: 3 DSDTRKIRNISILAHVDHGKTTLADHLIAATGG----GLLHPKLAGKLRFMDYLDEEQRR 58
+ T R +I++H D GKTTL + L+ G G + + A + D+ + E++R
Sbjct: 7 EKQTAXRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWXELEKQR 66
Query: 59 AITMKSSSIALHYKDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAV 118
I++ +S YKDY INL+D+PGH DF + D AL ++DA +GV +T +
Sbjct: 67 GISVTTSVXQFPYKDYLINLLDTPGHADFTEDTYRTLTAVDSALXVIDAAKGVEPRTIKL 126
Query: 119 LRQSWIEKLTPCLVLNKIDR 138
+ +NK DR
Sbjct: 127 XEVCRLRHTPIXTFINKXDR 146
>pdb|3VQT|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|B Chain B, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|C Chain C, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|D Chain D, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|B Chain B, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|C Chain C, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|D Chain D, Crystal Structure Analysis Of The Translation Factor Rf3
Length = 548
Score = 76.3 bits (186), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 73/133 (54%), Gaps = 6/133 (4%)
Query: 11 NISILAHVDHGKTTLADHLIAATGG----GLLHPKLAGKLRFMDYLDEEQRRAITMKSSS 66
+I++H D GKTTL + L+ G G + + A + D++ E+ R I++ +S
Sbjct: 33 TFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSV 92
Query: 67 IALHYKDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEK 126
+ Y+D +NL+D+PGH DF + D ALV++DA +GV QT ++ + +
Sbjct: 93 MQFPYRDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRM-R 151
Query: 127 LTPCLV-LNKIDR 138
TP + +NK+DR
Sbjct: 152 ATPVMTFVNKMDR 164
>pdb|4AC9|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4ACA|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACB|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
Length = 482
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 57/107 (53%), Gaps = 15/107 (14%)
Query: 11 NISILAHVDHGKTTLADHL--IAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIA 68
N+ I H+DHGKTTL+ L IA+T D L E Q+R IT+ A
Sbjct: 21 NLGIFGHIDHGKTTLSKVLTEIASTSA-------------HDKLPESQKRGITIDIGFSA 67
Query: 69 LHYKDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQT 115
++Y I L+D+PGH D V +AA + D AL++VDA EG QT
Sbjct: 68 FKLENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQT 114
>pdb|3UOQ|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome (Without
Viomycin)
Length = 534
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 77/140 (55%), Gaps = 6/140 (4%)
Query: 8 KIRNISILAHVDHGKTTLADHLI----AATGGGLLHPKLAGKLRFMDYLDEEQRRAITMK 63
K R +I++H D GKTT+ + ++ A G + + + + D+++ E++R I++
Sbjct: 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISIT 71
Query: 64 SSSIALHYKDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSW 123
+S + Y D +NL+D+PGH DF + D L+++DA +GV +T ++ +
Sbjct: 72 TSVMQFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTR 131
Query: 124 IEKLTPCLV-LNKIDRLISE 142
+ TP L +NK+DR I +
Sbjct: 132 LRD-TPILTFMNKLDRDIRD 150
>pdb|2H5E|A Chain A, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3
pdb|2H5E|B Chain B, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3
pdb|2O0F|A Chain A, Docking Of The Modified Rf3 X-Ray Structure Into Cryo-Em
Map Of E.Coli 70s Ribosome Bound With Rf3
pdb|3ZVO|Y Chain Y, Crystal Structure Of The Hybrid State Of Ribosome In
Complex With The Guanosine Triphosphatase Release Factor
3
pdb|3SFS|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome
Length = 529
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 77/140 (55%), Gaps = 6/140 (4%)
Query: 8 KIRNISILAHVDHGKTTLADHLI----AATGGGLLHPKLAGKLRFMDYLDEEQRRAITMK 63
K R +I++H D GKTT+ + ++ A G + + + + D+++ E++R I++
Sbjct: 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISIT 71
Query: 64 SSSIALHYKDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSW 123
+S + Y D +NL+D+PGH DF + D L+++DA +GV +T ++ +
Sbjct: 72 TSVMQFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTR 131
Query: 124 IEKLTPCLV-LNKIDRLISE 142
+ TP L +NK+DR I +
Sbjct: 132 LRD-TPILTFMNKLDRDIRD 150
>pdb|3AGJ|A Chain A, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|C Chain C, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|E Chain E, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|G Chain G, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
Length = 437
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 57/113 (50%), Gaps = 13/113 (11%)
Query: 11 NISILAHVDHGKTTLADHLIAATG--------GGLLHPKLAGKLRF-----MDYLDEEQR 57
N+ ++ HVDHGK+TL HL+ G K GK F +D + EE+
Sbjct: 8 NLVVIGHVDHGKSTLVGHLLYRLGYIEEKKLKELEEQAKSRGKESFKFAWILDKMKEERE 67
Query: 58 RAITMKSSSIALHYKDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEG 110
R IT+ + + K Y +ID+PGH DF + T A +D A+++V A +G
Sbjct: 68 RGITIDLTFMKFETKKYVFTIIDAPGHRDFVKNMITGASQADAAILVVSARKG 120
>pdb|3VMF|A Chain A, Archaeal Protein
Length = 440
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 57/113 (50%), Gaps = 13/113 (11%)
Query: 11 NISILAHVDHGKTTLADHLIAATG--------GGLLHPKLAGKLRF-----MDYLDEEQR 57
N+ ++ HVDHGK+TL HL+ G K GK F +D + EE+
Sbjct: 11 NLVVIGHVDHGKSTLVGHLLYRLGYIEEKKLKELEEQAKSRGKESFKFAWILDKMKEERE 70
Query: 58 RAITMKSSSIALHYKDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEG 110
R IT+ + + K Y +ID+PGH DF + T A +D A+++V A +G
Sbjct: 71 RGITIDLTFMKFETKKYVFTIIDAPGHRDFVKNMITGASQADAAILVVSARKG 123
>pdb|1WDT|A Chain A, Crystal Structure Of Ttk003000868 From Thermus
Thermophilus Hb8
pdb|2DY1|A Chain A, Crystal Structure Of Ef-G-2 From Thermus Thermophilus
Length = 665
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 66/138 (47%)
Query: 1 MGDSDTRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAI 60
MG IR ++++ H GKTTL + L+ TG ++ DY E +
Sbjct: 1 MGTEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRT 60
Query: 61 TMKSSSIALHYKDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLR 120
T+++ L ++ + + L+D+PG+ DF E+ A +D ALV V A GV + T
Sbjct: 61 TVRTGVAPLLFRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWT 120
Query: 121 QSWIEKLTPCLVLNKIDR 138
+ L +V+ K+D+
Sbjct: 121 VAERLGLPRMVVVTKLDK 138
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 81/182 (44%), Gaps = 24/182 (13%)
Query: 440 LAFARIFSGVLYSGQRVFVLSALYDPLKVESMQKHIQEAELQSLYLMMGQGLKPVASAKA 499
+A+ R++ G L G +S+Q + L LY+ MG+ L V A+A
Sbjct: 300 VAYLRLYRGRLKPG---------------DSLQSEAGQVRLPHLYVPMGKDLLEVEEAEA 344
Query: 500 GNVVAI---RGLGQQILKSATLSSTRNCWPFSSMVFQVSPTLRVAIEPSDPADMGALMKG 556
G V+ + GL + ++ PF+ + P + VA+ P D L +
Sbjct: 345 GFVLGVPKAEGLHRGMVLWQGEKPESEEVPFARL---PDPNVPVALHPKGRTDEARLGEA 401
Query: 557 LRLLNRADPFVEVSVSSR-GENVLAAAGEVHLERCIKDLKERFAKVSLEVSPPLVSYKET 615
LR L DP +++ GE +L GE+HL + L++ V +E S P V Y+ET
Sbjct: 402 LRKLLEEDPSLKLERQEETGELLLWGHGELHLATAKERLQDY--GVEVEFSVPKVPYRET 459
Query: 616 IE 617
I+
Sbjct: 460 IK 461
>pdb|1JNY|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1JNY|B Chain B, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1SKQ|A Chain A, The Crystal Structure Of Sulfolobus Solfataricus
Elongation Factor 1-Alpha In Complex With Magnesium And
Gdp
pdb|1SKQ|B Chain B, The Crystal Structure Of Sulfolobus Solfataricus
Elongation Factor 1-Alpha In Complex With Magnesium And
Gdp
Length = 435
Score = 66.2 bits (160), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 83/175 (47%), Gaps = 19/175 (10%)
Query: 11 NISILAHVDHGKTTLADHLIAATG------------GGLLHPKLAGKLRFM-DYLDEEQR 57
N+ ++ HVDHGK+TL L+ G K + K F+ D L EE+
Sbjct: 8 NLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERE 67
Query: 58 RAITMKSSSIALHYKDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVH---IQ 114
R +T+ + + K Y +ID+PGH DF + T A +D A+++V A +G + +
Sbjct: 68 RGVTINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMS 127
Query: 115 THAVLRQSWIEKLTPCLVLNKIDRLISELKLT-PLEAYNRLLRIVHEVNGIMSAY 168
R+ I L + L+++ ++++ LT P R IV +V+ M +Y
Sbjct: 128 VEGQTREHII--LAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSY 180
>pdb|1EFC|A Chain A, Intact Elongation Factor From E.Coli
pdb|1EFC|B Chain B, Intact Elongation Factor From E.Coli
pdb|1LS2|A Chain A, Fitting Of Ef-Tu And Trna In The Low Resolution Cryo-Em
Map Of An Ef-Tu Ternary Complex (Gdp And Kirromycin)
Bound To E. Coli 70s Ribosome
pdb|1QZD|A Chain A, Ef-Tu.Kirromycin Coordinates Fitted Into The Cryo-Em Map
Of Ef-Tu Ternary Complex (Gdp.Kirromycin) Bound 70s
Ribosome
pdb|2BVN|A Chain A, E. Coli Ef-Tu:gdpnp In Complex With The Antibiotic
Enacyloxin Iia
pdb|2BVN|B Chain B, E. Coli Ef-Tu:gdpnp In Complex With The Antibiotic
Enacyloxin Iia
pdb|3EP2|X Chain X, Model Of Phe-Trna(Phe) In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ3|X Chain X, Model Of Trna(Trp)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ4|X Chain X, Model Of Trna(Leu)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3FIH|Z Chain Z, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry
Consists Of The 30s Subunit, Trnas And The Ternary
Complex.
pdb|3IZV|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding. This Entry Contains The
Small Subunit Of A Ribosome Programmed With A
Near-Cognate Codon, AT-Site Trna, P-Site Trna, Mrna And
Ef-Tu
pdb|3IZW|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding.This Entry Contains The
Small Subunit Of A Ribosome Programmed With A Cognate
Codon, AT-Site Trna, P-Site Trna, Mrna And Ef-Tu
Length = 393
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 64/133 (48%), Gaps = 13/133 (9%)
Query: 11 NISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLD---EEQRRAITMKSSSI 67
N+ + HVDHGKTTL + +L G R D +D EE+ R IT+ +S +
Sbjct: 13 NVGTIGHVDHGKTTLTAAITT-----VLAKTYGGAARAFDQIDNAPEEKARGITINTSHV 67
Query: 68 ALHYKDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQT--HAVL-RQSWI 124
+D PGH D+ + T A DGA+++V A +G QT H +L RQ +
Sbjct: 68 EYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGV 127
Query: 125 EKLTPCLVLNKID 137
+ + LNK D
Sbjct: 128 PYI--IVFLNKCD 138
>pdb|1OB2|A Chain A, E. Coli Elongation Factor Ef-Tu Complexed With The
Antibiotic Kirromycin, A Gtp Analog, And Phe-Trna
Length = 393
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 64/133 (48%), Gaps = 13/133 (9%)
Query: 11 NISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLD---EEQRRAITMKSSSI 67
N+ + HVDHGKTTL + +L G R D +D EE+ R IT+ +S +
Sbjct: 13 NVGTIGHVDHGKTTLTAAITT-----VLAKTYGGAARAFDQIDNAPEEKARGITINTSHV 67
Query: 68 ALHYKDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQT--HAVL-RQSWI 124
+D PGH D+ + T A DGA+++V A +G QT H +L RQ +
Sbjct: 68 EYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGV 127
Query: 125 EKLTPCLVLNKID 137
+ + LNK D
Sbjct: 128 PYI--IVFLNKCD 138
>pdb|1D8T|A Chain A, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|1D8T|B Chain B, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|2FX3|A Chain A, Crystal Structure Determination Of E. Coli Elongation
Factor, Tu Using A Twinned Data Set
pdb|1ETU|A Chain A, Structural Details Of The Binding Of Guanosine Diphosphate
To Elongation Factor Tu From E. Coli As Studied By X-Ray
Crystallography
Length = 393
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 64/133 (48%), Gaps = 13/133 (9%)
Query: 11 NISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLD---EEQRRAITMKSSSI 67
N+ + HVDHGKTTL + +L G R D +D EE+ R IT+ +S +
Sbjct: 13 NVGTIGHVDHGKTTLTAAITT-----VLAKTYGGAARAFDQIDNAPEEKARGITINTSHV 67
Query: 68 ALHYKDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQT--HAVL-RQSWI 124
+D PGH D+ + T A DGA+++V A +G QT H +L RQ +
Sbjct: 68 EYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGV 127
Query: 125 EKLTPCLVLNKID 137
+ + LNK D
Sbjct: 128 PYI--IVFLNKCD 138
>pdb|1DG1|G Chain G, Whole, Unmodified, Ef-Tu(Elongation Factor Tu).
pdb|1DG1|H Chain H, Whole, Unmodified, Ef-Tu(Elongation Factor Tu)
Length = 394
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 64/133 (48%), Gaps = 13/133 (9%)
Query: 11 NISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLD---EEQRRAITMKSSSI 67
N+ + HVDHGKTTL + +L G R D +D EE+ R IT+ +S +
Sbjct: 14 NVGTIGHVDHGKTTLTAAITT-----VLAKTYGGAARAFDQIDNAPEEKARGITINTSHV 68
Query: 68 ALHYKDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQT--HAVL-RQSWI 124
+D PGH D+ + T A DGA+++V A +G QT H +L RQ +
Sbjct: 69 EYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGV 128
Query: 125 EKLTPCLVLNKID 137
+ + LNK D
Sbjct: 129 PYI--IVFLNKCD 139
>pdb|3U6B|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028
pdb|3U6B|B Chain B, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028
pdb|3U6K|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldk733
pdb|3U6K|B Chain B, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldk733
pdb|3U2Q|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Lff571
pdb|4G5G|A Chain A, Ef-Tu (Escherichia Coli) Complexed With Nvp-Ldu796
Length = 394
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 64/133 (48%), Gaps = 13/133 (9%)
Query: 11 NISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLD---EEQRRAITMKSSSI 67
N+ + HVDHGKTTL + +L G R D +D EE+ R IT+ +S +
Sbjct: 14 NVGTIGHVDHGKTTLTAAITT-----VLAKTYGGAARAFDQIDNAPEEKARGITINTSHV 68
Query: 68 ALHYKDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQT--HAVL-RQSWI 124
+D PGH D+ + T A DGA+++V A +G QT H +L RQ +
Sbjct: 69 EYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGV 128
Query: 125 EKLTPCLVLNKID 137
+ + LNK D
Sbjct: 129 PYI--IVFLNKCD 139
>pdb|3MMP|A Chain A, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
pdb|3MMP|C Chain C, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
Length = 678
Score = 63.2 bits (152), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 64/133 (48%), Gaps = 13/133 (9%)
Query: 11 NISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLD---EEQRRAITMKSSSI 67
N+ + HVDHGKTTL + +L G R D +D EE+ R IT+ +S +
Sbjct: 298 NVGTIGHVDHGKTTLTAAITT-----VLAKTYGGAARAFDQIDNAPEEKARGITINTSHV 352
Query: 68 ALHYKDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQT--HAVL-RQSWI 124
+D PGH D+ + T A DGA+++V A +G QT H +L RQ +
Sbjct: 353 EYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGV 412
Query: 125 EKLTPCLVLNKID 137
+ + LNK D
Sbjct: 413 PYI--IVFLNKCD 423
>pdb|1EFU|A Chain A, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
pdb|1EFU|C Chain C, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
Length = 385
Score = 63.2 bits (152), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 64/133 (48%), Gaps = 13/133 (9%)
Query: 11 NISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLD---EEQRRAITMKSSSI 67
N+ + HVDHGKTTL + +L G R D +D EE+ R IT+ +S +
Sbjct: 5 NVGTIGHVDHGKTTLTAAITT-----VLAKTYGGAARAFDQIDNAPEEKARGITINTSHV 59
Query: 68 ALHYKDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQT--HAVL-RQSWI 124
+D PGH D+ + T A DGA+++V A +G QT H +L RQ +
Sbjct: 60 EYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGV 119
Query: 125 EKLTPCLVLNKID 137
+ + LNK D
Sbjct: 120 PYI--IVFLNKCD 130
>pdb|3AGP|A Chain A, Structure Of Viral Polymerase Form I
pdb|3AGQ|A Chain A, Structure Of Viral Polymerase Form Ii
pdb|3AVT|A Chain A, Structure Of Viral Rna Polymerase Complex 1
pdb|3AVU|A Chain A, Structure Of Viral Rna Polymerase Complex 2
pdb|3AVV|A Chain A, Structure Of Viral Rna Polymerase Complex 3
pdb|3AVW|A Chain A, Structure Of Viral Rna Polymerase Complex 4
pdb|3AVX|A Chain A, Structure Of Viral Rna Polymerase Complex 5
pdb|3AVY|A Chain A, Structure Of Viral Rna Polymerase Complex 6
pdb|3VNU|A Chain A, Complex Structure Of Viral Rna Polymerase I
pdb|3VNV|A Chain A, Complex Structure Of Viral Rna Polymerase Ii
pdb|4FWT|A Chain A, Complex Structure Of Viral Rna Polymerase Form Iii
Length = 1289
Score = 62.8 bits (151), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 64/133 (48%), Gaps = 13/133 (9%)
Query: 11 NISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLD---EEQRRAITMKSSSI 67
N+ + HVDHGKTTL + +L G R D +D EE+ R IT+ +S +
Sbjct: 298 NVGTIGHVDHGKTTLTAAITT-----VLAKTYGGAARAFDQIDNAPEEKARGITINTSHV 352
Query: 68 ALHYKDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQT--HAVL-RQSWI 124
+D PGH D+ + T A DGA+++V A +G QT H +L RQ +
Sbjct: 353 EYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGV 412
Query: 125 EKLTPCLVLNKID 137
+ + LNK D
Sbjct: 413 PYI--IVFLNKCD 423
>pdb|1AIP|A Chain A, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|B Chain B, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|E Chain E, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|F Chain F, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
Length = 405
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 67/135 (49%), Gaps = 16/135 (11%)
Query: 11 NISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLD-----EEQRRAITMKSS 65
N+ + HVDHGKTTL L T +P + K DY D EE+ R IT+ ++
Sbjct: 13 NVGTIGHVDHGKTTLTAALTYVTAA--ENPNVEVK----DYGDIDKAPEERARGITINTA 66
Query: 66 SIALHYKDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQT--HAVL-RQS 122
+ + +D PGH D+ + T A DGA+++V A +G QT H +L RQ
Sbjct: 67 HVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV 126
Query: 123 WIEKLTPCLVLNKID 137
+ + + +NK+D
Sbjct: 127 GVPYI--VVFMNKVD 139
>pdb|2C77|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Ge2270 A
Length = 405
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 67/135 (49%), Gaps = 16/135 (11%)
Query: 11 NISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLD-----EEQRRAITMKSS 65
N+ + HVDHGKTTL L T +P + K DY D EE+ R IT+ ++
Sbjct: 13 NVGTIGHVDHGKTTLTAALTYVTAA--ENPNVEVK----DYGDIDKAPEERARGITINTA 66
Query: 66 SIALHYKDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQT--HAVL-RQS 122
+ + +D PGH D+ + T A DGA+++V A +G QT H +L RQ
Sbjct: 67 HVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV 126
Query: 123 WIEKLTPCLVLNKID 137
+ + + +NK+D
Sbjct: 127 GVPYI--VVFMNKVD 139
>pdb|1EXM|A Chain A, Crystal Structure Of Thermus Thermophilus Elongation
Factor Tu (Ef-Tu) In Complex With The Gtp Analogue
Gppnhp.
pdb|1HA3|A Chain A, Elongation Factor Tu In Complex With Aurodox
pdb|1HA3|B Chain B, Elongation Factor Tu In Complex With Aurodox
pdb|3FIC|Z Chain Z, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas
And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A
6.4 A Cryo-Em Map. This File Contains The 30s Subunit
And The Ligands
pdb|2XQD|Z Chain Z, The Structure Of Ef-Tu And Aminoacyl-Trna Bound To The 70s
Ribosome With A Gtp Analog
Length = 405
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 67/135 (49%), Gaps = 16/135 (11%)
Query: 11 NISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLD-----EEQRRAITMKSS 65
N+ + HVDHGKTTL L T +P + K DY D EE+ R IT+ ++
Sbjct: 13 NVGTIGHVDHGKTTLTAALTFVTAA--ENPNVEVK----DYGDIDKAPEERARGITINTA 66
Query: 66 SIALHYKDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQT--HAVL-RQS 122
+ + +D PGH D+ + T A DGA+++V A +G QT H +L RQ
Sbjct: 67 HVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV 126
Query: 123 WIEKLTPCLVLNKID 137
+ + + +NK+D
Sbjct: 127 GVPYI--VVFMNKVD 139
>pdb|2C78|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Pulvomycin
Length = 405
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 67/132 (50%), Gaps = 10/132 (7%)
Query: 11 NISILAHVDHGKTTLADHL--IAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIA 68
N+ + HVDHGKTTL L +AA + K G + D EE+ R IT+ ++ +
Sbjct: 13 NVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDI---DKAPEERARGITINTAHVE 69
Query: 69 LHYKDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQT--HAVL-RQSWIE 125
+ +D PGH D+ + T A DGA+++V A +G QT H +L RQ +
Sbjct: 70 YETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVP 129
Query: 126 KLTPCLVLNKID 137
+ + +NK+D
Sbjct: 130 YI--VVFMNKVD 139
>pdb|2Y0Y|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y10|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome.
pdb|2Y12|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y14|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y16|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y18|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome
Length = 405
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 67/132 (50%), Gaps = 10/132 (7%)
Query: 11 NISILAHVDHGKTTLADHL--IAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIA 68
N+ + HVDHGKTTL L +AA + K G + D EE+ R IT+ ++ +
Sbjct: 13 NVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDI---DKAPEERARGITINTAHVE 69
Query: 69 LHYKDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQT--HAVL-RQSWIE 125
+ +D PGH D+ + T A DGA+++V A +G QT H +L RQ +
Sbjct: 70 YETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVP 129
Query: 126 KLTPCLVLNKID 137
+ + +NK+D
Sbjct: 130 YI--VVFMNKVD 139
>pdb|2WRN|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 1 Of 4).
pdb|2WRQ|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 3 Of 4)
Length = 406
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 67/132 (50%), Gaps = 10/132 (7%)
Query: 11 NISILAHVDHGKTTLADHL--IAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIA 68
N+ + HVDHGKTTL L +AA + K G + D EE+ R IT+ ++ +
Sbjct: 14 NVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDI---DKAPEERARGITINTAHVE 70
Query: 69 LHYKDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQT--HAVL-RQSWIE 125
+ +D PGH D+ + T A DGA+++V A +G QT H +L RQ +
Sbjct: 71 YETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVP 130
Query: 126 KLTPCLVLNKID 137
+ + +NK+D
Sbjct: 131 YI--VVFMNKVD 140
>pdb|2Y0U|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
pdb|2Y0W|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
Length = 405
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 67/132 (50%), Gaps = 10/132 (7%)
Query: 11 NISILAHVDHGKTTLADHL--IAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIA 68
N+ + HVDHGKTTL L +AA + K G + D EE+ R IT+ ++ +
Sbjct: 13 NVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDI---DKAPEERARGITINTAHVE 69
Query: 69 LHYKDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQT--HAVL-RQSWIE 125
+ +D PGH D+ + T A DGA+++V A +G QT H +L RQ +
Sbjct: 70 YETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVP 129
Query: 126 KLTPCLVLNKID 137
+ + +NK+D
Sbjct: 130 YI--VVFMNKVD 139
>pdb|1EFT|A Chain A, The Crystal Structure Of Elongation Factor Ef-Tu From
Thermus Aquaticus In The Gtp Conformation
Length = 405
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 67/135 (49%), Gaps = 16/135 (11%)
Query: 11 NISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLD-----EEQRRAITMKSS 65
N+ + HVDHGKTTL L T +P + K DY D EE+ R IT+ ++
Sbjct: 13 NVGTIGHVDHGKTTLTAALTFVTAA--ENPNVEVK----DYGDIDKAPEERARGITINTA 66
Query: 66 SIALHYKDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQT--HAVL-RQS 122
+ + +D PGH D+ + T A DGA+++V A +G QT H +L RQ
Sbjct: 67 HVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV 126
Query: 123 WIEKLTPCLVLNKID 137
+ + + +NK+D
Sbjct: 127 GVPYI--VVFMNKVD 139
>pdb|1TTT|A Chain A, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|B Chain B, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|C Chain C, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TUI|A Chain A, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|B Chain B, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|C Chain C, Intact Elongation Factor Tu In Complex With Gdp
pdb|1B23|P Chain P, E. Coli Cysteinyl-Trna And T. Aquaticus Elongation Factor
Ef-Tu:gtp Ternary Complex
pdb|1ZC8|Y Chain Y, Coordinates Of Tmrna, Smpb, Ef-tu And H44 Fitted Into
Cryo- Em Map Of The 70s Ribosome And Tmrna Complex
pdb|1OB5|A Chain A, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|C Chain C, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|E Chain E, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
Length = 405
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 67/132 (50%), Gaps = 10/132 (7%)
Query: 11 NISILAHVDHGKTTLADHL--IAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIA 68
N+ + HVDHGKTTL L +AA + K G + D EE+ R IT+ ++ +
Sbjct: 13 NVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDI---DKAPEERARGITINTAHVE 69
Query: 69 LHYKDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQT--HAVL-RQSWIE 125
+ +D PGH D+ + T A DGA+++V A +G QT H +L RQ +
Sbjct: 70 YETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVP 129
Query: 126 KLTPCLVLNKID 137
+ + +NK+D
Sbjct: 130 YI--VVFMNKVD 139
>pdb|4ABR|Z Chain Z, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
With The 70s Ribosome
Length = 405
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 67/132 (50%), Gaps = 10/132 (7%)
Query: 11 NISILAHVDHGKTTLADHL--IAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIA 68
N+ + HVDHGKTTL L +AA + K G + D EE+ R IT+ ++ +
Sbjct: 13 NVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDI---DKAPEERARGITINTAHVE 69
Query: 69 LHYKDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQT--HAVL-RQSWIE 125
+ +D PGH D+ + T A DGA+++V A +G QT H +L RQ +
Sbjct: 70 YETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVP 129
Query: 126 KLTPCLVLNKID 137
+ + +NK+D
Sbjct: 130 YI--VVFMNKVD 139
>pdb|1MJ1|A Chain A, Fitting The Ternary Complex Of Ef-TuTRNAGTP AND RIBOSOMAL
PROTEINS Into A 13 A Cryo-Em Map Of The Coli 70s
Ribosome
Length = 405
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 69/137 (50%), Gaps = 10/137 (7%)
Query: 6 TRKIRNISILAHVDHGKTTLADHL--IAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMK 63
T++ N+ + HVDHGKTTL L +AA + K G + D EE+ R IT+
Sbjct: 8 TKRHVNVGTIGHVDHGKTTLTAALTYVAAAENRNVEVKDYGDI---DKAREERARGITIN 64
Query: 64 SSSIALHYKDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQT--HAVL-R 120
++ + + +D GH D+ + T A DGA+++V A +G QT H +L R
Sbjct: 65 TAHVEYETAKRHYSHVDCRGHADYIKNMITGAAQMDGAILVVSAADGRMRQTREHILLAR 124
Query: 121 QSWIEKLTPCLVLNKID 137
Q + + + +NK+D
Sbjct: 125 QVGVRYI--VVFMNKVD 139
>pdb|1G7S|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdp
pdb|1G7T|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdpnp
Length = 594
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 69/141 (48%), Gaps = 16/141 (11%)
Query: 8 KIRN--ISILAHVDHGKTTLADHL----IAATGGGLLHPKLAGKLRFMDYLDE---EQRR 58
KIR+ +S+L HVDHGKTTL DH+ +A+ G + + MD ++ + +
Sbjct: 2 KIRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLK 61
Query: 59 AITMKSSSIALHYKDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAV 118
+++ + L + ID+PGH F + L+D A+++VD EG QT
Sbjct: 62 KFSIRETLPGLFF-------IDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEA 114
Query: 119 LRQSWIEKLTPCLVLNKIDRL 139
L + + + NKIDR+
Sbjct: 115 LNILRMYRTPFVVAANKIDRI 135
>pdb|1D2E|A Chain A, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|B Chain B, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|C Chain C, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|D Chain D, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
Length = 397
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 66/137 (48%), Gaps = 21/137 (15%)
Query: 11 NISILAHVDHGKTTLADHL--IAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKS---- 64
N+ + HVDHGKTTL + I A GGG K +D EE+ R IT+ +
Sbjct: 5 NVGTIGHVDHGKTTLTAAITKILAEGGGAKFK----KYEEIDNAPEERARGITINAAHVE 60
Query: 65 -SSIALHYKDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQT--HAVL-R 120
S+ A HY D PGH D+ + T DG +++V A +G QT H +L R
Sbjct: 61 YSTAARHYAH-----TDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLAR 115
Query: 121 QSWIEKLTPCLVLNKID 137
Q +E + + +NK D
Sbjct: 116 QIGVEHV--VVYVNKAD 130
>pdb|1XB2|A Chain A, Crystal Structure Of Bos Taurus Mitochondrial Elongation
Factor TuTS COMPLEX
Length = 409
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 65/137 (47%), Gaps = 21/137 (15%)
Query: 11 NISILAHVDHGKTTLADHL--IAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKS---- 64
N+ + HVDHGKTTL + I A GGG K +D EE+ R IT+ +
Sbjct: 16 NVGTIGHVDHGKTTLTAAITKILAEGGGAKFK----KYEEIDNAPEERARGITINAAHVE 71
Query: 65 -SSIALHYKDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQT--HAVL-R 120
S+ A HY D PGH D+ T DG +++V A +G QT H +L R
Sbjct: 72 YSTAARHYAH-----TDCPGHADYVKNXITGTAPLDGCILVVAANDGPXPQTREHLLLAR 126
Query: 121 QSWIEKLTPCLVLNKID 137
Q +E + + +NK D
Sbjct: 127 QIGVEHV--VVYVNKAD 141
>pdb|1F60|A Chain A, Crystal Structure Of The Yeast Elongation Factor Complex
Eef1a:eef1ba
pdb|1G7C|A Chain A, Yeast Eef1a:eef1ba In Complex With Gdpnp
pdb|1IJE|A Chain A, Nucleotide Exchange Intermediates In The Eef1a-eef1ba
Complex
pdb|1IJF|A Chain A, Nucleotide Exchange Mechanisms In The Eef1a-Eef1ba Complex
pdb|2B7B|A Chain A, Yeast Guanine Nucleotide Exchange Factor Eef1balpha K205a
Mutant In Complex With Eef1a And Gdp
pdb|2B7C|A Chain A, Yeast Guanine Nucleotide Exchange Factor Eef1balpha K205a
Mutant In Complex With Eef1a
Length = 458
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 13/108 (12%)
Query: 11 NISILAHVDHGKTTLADHLIAATGG------GLLHPKLA--GKLRF-----MDYLDEEQR 57
N+ ++ HVD GK+T HLI GG + A GK F +D L E+
Sbjct: 9 NVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERE 68
Query: 58 RAITMKSSSIALHYKDYAINLIDSPGHMDFCSEVSTAARLSDGALVLV 105
R IT+ + Y + +ID+PGH DF + T +D A++++
Sbjct: 69 RGITIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILII 116
>pdb|2LKC|A Chain A, Free B.St If2-G2
pdb|2LKD|A Chain A, If2-G2 Gdp Complex
Length = 178
Score = 53.9 bits (128), Expect = 4e-07, Method: Composition-based stats.
Identities = 34/127 (26%), Positives = 61/127 (48%), Gaps = 18/127 (14%)
Query: 12 ISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHY 71
++I+ HVDHGKTTL D + H K+ E++ IT + +
Sbjct: 11 VTIMGHVDHGKTTLLD--------AIRHSKVT----------EQEAGGITQHIGAYQVTV 52
Query: 72 KDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCL 131
D I +D+PGH F + + A+++D +++V A +GV QT + + + +
Sbjct: 53 NDKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIV 112
Query: 132 VLNKIDR 138
+NK+D+
Sbjct: 113 AINKMDK 119
>pdb|1G7R|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Length = 594
Score = 52.8 bits (125), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 67/141 (47%), Gaps = 16/141 (11%)
Query: 8 KIRN--ISILAHVDHGKTTLADHL----IAATGGGLLHPKLAGKLRFMDYLD---EEQRR 58
KIR+ +S+L HVDHGKTTL DH+ +A+ G + + D ++ + +
Sbjct: 2 KIRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPXDVIEGICGDFLK 61
Query: 59 AITMKSSSIALHYKDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAV 118
+++ + L + ID+PGH F + L+D A+++VD EG QT
Sbjct: 62 KFSIRETLPGLFF-------IDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEA 114
Query: 119 LRQSWIEKLTPCLVLNKIDRL 139
L + + NKIDR+
Sbjct: 115 LNILRXYRTPFVVAANKIDRI 135
>pdb|1EFM|A Chain A, Structure Of The Gdp Domain Of Ef-Tu And Location Of The
Amino Acids Homologous To Ras Oncogene Proteins
Length = 379
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 59/133 (44%), Gaps = 27/133 (20%)
Query: 11 NISILAHVDHGKTTLA---DHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSI 67
N+ + HVDHGKTTL ++A T GG R IT+ +S +
Sbjct: 13 NVGTIGHVDHGKTTLTAAITTVLAKTYGG-------------------AARGITINTSHV 53
Query: 68 ALHYKDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQT--HAVL-RQSWI 124
+D PGH D+ + T A DGA+++V A +G QT H +L RQ +
Sbjct: 54 EYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGV 113
Query: 125 EKLTPCLVLNKID 137
+ + LNK D
Sbjct: 114 PYI--IVFLNKCD 124
>pdb|2D74|A Chain A, Crystal Structure Of Translation Initiation Factor
Aif2betagamma Heterodimer
pdb|2DCU|A Chain A, Crystal Structure Of Translation Initiation Factor
Aif2betagamma Heterodimer With Gdp
Length = 419
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 54/133 (40%), Gaps = 42/133 (31%)
Query: 4 SDTRKIR----NISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRA 59
+ RK R NI ++ HVDHGKTTL L + D EE RR
Sbjct: 2 GEKRKTRQAEVNIGMVGHVDHGKTTLTKALTGV---------------WTDTHSEELRRG 46
Query: 60 ITMK-----------------SSSIALHYKDYA------INLIDSPGHMDFCSEVSTAAR 96
IT+K S+S Y + ++ IDSPGH + + A
Sbjct: 47 ITIKIGFADAEIRRCSNCGRYSTSPICPYCGHETEFIRRVSFIDSPGHEALMTTMLAGAS 106
Query: 97 LSDGALVLVDAVE 109
L DGA++++ A E
Sbjct: 107 LMDGAILVIAANE 119
>pdb|3MCA|A Chain A, Structure Of The Dom34-Hbs1 Complex And Implications For
Its Role In No-Go Decay
Length = 592
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 74/157 (47%), Gaps = 25/157 (15%)
Query: 4 SDTRKIRNISILAHVDHGKTTLADHLIAATGG------GLLHPKLA--GKLRF-----MD 50
S+ + + ++ + HVD GK+T+ ++ G LH + A GK F +D
Sbjct: 172 SNPKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLD 231
Query: 51 YLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDA--- 107
+EE+ R +TM +S + D+PGH DF S + A +D A+++VD+
Sbjct: 232 TTEEERARGVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQN 291
Query: 108 ------VEGVHIQTHA-VLRQSWIEKLTPCLVLNKID 137
+E + HA +LR I ++ + +NK+D
Sbjct: 292 NFERGFLENGQTREHAYLLRALGISEI--VVSVNKLD 326
>pdb|1KK3|A Chain A, Structure Of The Wild-Type Large Gamma Subunit Of
Initiation Factor Eif2 From Pyrococcus Abyssi Complexed
With Gdp-Mg2+
Length = 410
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 50/122 (40%), Gaps = 38/122 (31%)
Query: 11 NISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMK------- 63
NI ++ HVDHGKTTL L + D EE RR IT+K
Sbjct: 12 NIGMVGHVDHGKTTLTKALTGV---------------WTDTHSEELRRGITIKIGFADAE 56
Query: 64 ----------SSSIALHYKDYA------INLIDSPGHMDFCSEVSTAARLSDGALVLVDA 107
S+S Y + ++ ID+PGH + + A L DGA++++ A
Sbjct: 57 IRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAA 116
Query: 108 VE 109
E
Sbjct: 117 NE 118
>pdb|1KJZ|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant
pdb|1KK1|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdpnp-Mg2+
pdb|1KK2|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdp-Mg2+
Length = 410
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 50/122 (40%), Gaps = 38/122 (31%)
Query: 11 NISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMK------- 63
NI ++ HVDHGKTTL L + D EE RR IT+K
Sbjct: 12 NIGMVGHVDHGKTTLTKALTGV---------------WTDTHSEELRRGITIKIGFADAE 56
Query: 64 ----------SSSIALHYKDYA------INLIDSPGHMDFCSEVSTAARLSDGALVLVDA 107
S+S Y + ++ ID+PGH + + A L DGA++++ A
Sbjct: 57 IRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAA 116
Query: 108 VE 109
E
Sbjct: 117 NE 118
>pdb|1KK0|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi
Length = 410
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 48/122 (39%), Gaps = 38/122 (31%)
Query: 11 NISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMK------- 63
NI + HVDHGKTTL L + D EE RR IT+K
Sbjct: 12 NIGXVGHVDHGKTTLTKALTGV---------------WTDTHSEELRRGITIKIGFADAE 56
Query: 64 ----------SSSIALHYKDYA------INLIDSPGHMDFCSEVSTAARLSDGALVLVDA 107
S+S Y + ++ ID+PGH + A L DGA++++ A
Sbjct: 57 IRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALXTTXLAGASLXDGAILVIAA 116
Query: 108 VE 109
E
Sbjct: 117 NE 118
>pdb|3IZY|P Chain P, Mammalian Mitochondrial Translation Initiation Factor 2
Length = 537
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 61/135 (45%), Gaps = 33/135 (24%)
Query: 12 ISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHY 71
++I+ HVDHGKTTL D KLR + + M++ I H
Sbjct: 7 VTIMGHVDHGKTTLLD-----------------KLR--------KTQVAAMEAGGITQHI 41
Query: 72 KDYAINL--------IDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSW 123
+ ++L +D+PGH F + + +++D +++V A +GV QT ++ +
Sbjct: 42 GAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAK 101
Query: 124 IEKLTPCLVLNKIDR 138
+ L +NK D+
Sbjct: 102 DAHVPIVLAINKCDK 116
>pdb|1ZO1|I Chain I, If2, If1, And Trna Fitted To Cryo-Em Data Of E. Coli 70s
Initiation Complex
Length = 501
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 63/127 (49%), Gaps = 18/127 (14%)
Query: 12 ISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHY 71
++I+ HVDHGKT+L +++ + K+A + IT + +
Sbjct: 7 VTIMGHVDHGKTSLLEYIRST--------KVASG----------EAGGITQHIGAYHVET 48
Query: 72 KDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCL 131
++ I +D+PGH F S + A+ +D +++V A +GV QT ++ + ++ +
Sbjct: 49 ENGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVV 108
Query: 132 VLNKIDR 138
+NKID+
Sbjct: 109 AVNKIDK 115
>pdb|1R5B|A Chain A, Crystal Structure Analysis Of Sup35
pdb|1R5N|A Chain A, Crystal Structure Analysis Of Sup35 Complexed With Gdp
pdb|1R5O|A Chain A, Crystal Structure Analysis Of Sup35 Complexed With Gmppnp
Length = 467
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 66/150 (44%), Gaps = 25/150 (16%)
Query: 11 NISILAHVDHGKTTLADHLIAATG--------GGLLHPKLAGKLRF-----MDYLDEEQR 57
NI + HVD GK+TL +++ TG K AGK + +D EE+
Sbjct: 45 NIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEERE 104
Query: 58 RAITMKSSSIALHYKDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGV------ 111
+ T++ + +L+D+PGH + + + A +D ++++ A G
Sbjct: 105 KGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFE 164
Query: 112 ---HIQTHAVL-RQSWIEKLTPCLVLNKID 137
+ HAVL R I L +V+NK+D
Sbjct: 165 RGGQTREHAVLARTQGINHL--VVVINKMD 192
>pdb|1S0U|A Chain A, Eif2gamma Apo
Length = 408
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 48/127 (37%), Gaps = 48/127 (37%)
Query: 11 NISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALH 70
NI ++ HVDHGKT+L L + D EE RR I SI L
Sbjct: 10 NIGMVGHVDHGKTSLTKALTGV---------------WTDRHSEELRRGI-----SIRLG 49
Query: 71 YKDYAI----------------------------NLIDSPGHMDFCSEVSTAARLSDGAL 102
Y D I + +DSPGH + + + A L DGA+
Sbjct: 50 YADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAI 109
Query: 103 VLVDAVE 109
+++ A E
Sbjct: 110 LVIAANE 116
>pdb|3P26|A Chain A, Crystal Structure Of S. Cerevisiae Hbs1 Protein
(Apo-Form), A Translational Gtpase Involved In Rna
Quality Control Pathways And Interacting With
Dom34PELOTA
pdb|3P26|B Chain B, Crystal Structure Of S. Cerevisiae Hbs1 Protein
(Apo-Form), A Translational Gtpase Involved In Rna
Quality Control Pathways And Interacting With
Dom34PELOTA
Length = 483
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 49/108 (45%), Gaps = 17/108 (15%)
Query: 14 ILAHVDHGKTTLADHLI--------AATGGGLLHPKLAGKLRF-----MDYLDEEQRRAI 60
+L HVD GK+TL L+ + + GK F MD +EE+ R +
Sbjct: 38 VLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGV 97
Query: 61 TMK--SSSIALHYKDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVD 106
T+ +S + H ++ I +D+PGH DF +D A++ VD
Sbjct: 98 TVSICTSHFSTHRANFTI--VDAPGHRDFVPNAIMGISQADMAILCVD 143
>pdb|3IZQ|1 Chain 1, Structure Of The Dom34-Hbs1-Gdpnp Complex Bound To A
Translating Ribosome
Length = 611
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 49/108 (45%), Gaps = 17/108 (15%)
Query: 14 ILAHVDHGKTTLADHLI--------AATGGGLLHPKLAGKLRF-----MDYLDEEQRRAI 60
+L HVD GK+TL L+ + + GK F MD +EE+ R +
Sbjct: 172 VLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGV 231
Query: 61 TMK--SSSIALHYKDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVD 106
T+ +S + H ++ I +D+PGH DF +D A++ VD
Sbjct: 232 TVSICTSHFSTHRANFTI--VDAPGHRDFVPNAIMGISQADMAILCVD 277
>pdb|1ZUN|B Chain B, Crystal Structure Of A Gtp-Regulated Atp Sulfurylase
Heterodimer From Pseudomonas Syringae
Length = 434
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 7/94 (7%)
Query: 48 FMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDA 107
+D L E+ + IT+ + + D+PGH + +T A D A++LVDA
Sbjct: 78 LVDGLQAEREQGITIDVAYRYFSTAKRKFIIADTPGHEQYTRNXATGASTCDLAIILVDA 137
Query: 108 VEGVHIQTHAVLRQSWIEKLTP----CLVLNKID 137
GV QT R S+I L + +NK D
Sbjct: 138 RYGVQTQTR---RHSYIASLLGIKHIVVAINKXD 168
>pdb|3P27|A Chain A, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Gdp-Bound
Form), A Translational Gtpase Involved In Rna Quality
Control Pathways And Interacting With Dom34PELOTA
pdb|3P27|B Chain B, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Gdp-Bound
Form), A Translational Gtpase Involved In Rna Quality
Control Pathways And Interacting With Dom34PELOTA
Length = 483
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 17/108 (15%)
Query: 14 ILAHVDHGKTTLADHLI--------AATGGGLLHPKLAGKLRF-----MDYLDEEQRRAI 60
+L HVD GK+TL L+ + + GK F D +EE+ R +
Sbjct: 38 VLGHVDAGKSTLXGRLLYDLNIVNQSQLRKLQRESETXGKSSFKFAWIXDQTNEERERGV 97
Query: 61 TMK--SSSIALHYKDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVD 106
T+ +S + H ++ I +D+PGH DF +D A++ VD
Sbjct: 98 TVSICTSHFSTHRANFTI--VDAPGHRDFVPNAIXGISQADXAILCVD 143
>pdb|3PEN|A Chain A, Structure Of Archaeal Initiation Factor Aif2gamma Subunit
Delta 37-47 From Sulfolobus Solfataricus In The
Gdp-Bound Form.
pdb|3SJY|A Chain A, The Structure Of Initiation Factor Aif2 Gamma Subunit
Delta 37-47 From Archaeon Sulfolobus Solfataricus
Complexed With Gdpcp
Length = 403
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 12/106 (11%)
Query: 11 NISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRR--AITMKSSSIA 68
NI ++ HVDHGKTTL + G+ K G + E ++ A + S +
Sbjct: 10 NIGVVGHVDHGKTTLVQAIT-----GIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKS 64
Query: 69 LHYKDYA-----INLIDSPGHMDFCSEVSTAARLSDGALVLVDAVE 109
D I+ ID+PGH + + + A L DGA+++V A E
Sbjct: 65 CGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANE 110
>pdb|3SJZ|A Chain A, The Structure Of Aif2gamma Subunit Delta 41-45 From
Archaeon Sulfolobus Solfataricus Complexed With Gdp And
Gdpnp
Length = 409
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 18/112 (16%)
Query: 11 NISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDE--------EQRRAITM 62
NI ++ HVDHGKTTL + G+ K + + + Y + ++ A
Sbjct: 10 NIGVVGHVDHGKTTLVQAIT-----GIWTSKHSEETIKLGYAETNIGVCESCKKPEAYVT 64
Query: 63 KSSSIALHYKDYA-----INLIDSPGHMDFCSEVSTAARLSDGALVLVDAVE 109
+ S + D I+ ID+PGH + + + A L DGA+++V A E
Sbjct: 65 EPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANE 116
>pdb|2HCJ|B Chain B, "trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline"
Length = 335
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Query: 59 AITMKSSSIALHYKDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQT--H 116
IT+ +S + +D PGH D+ + T A DGA+++V A +G QT H
Sbjct: 1 GITINTSHVEYDTPTRHYAHVDXPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREH 60
Query: 117 AVL-RQSWIEKLTPCLVLNKID 137
+L RQ + + + LNK D
Sbjct: 61 ILLGRQVGVPYI--IVFLNKCD 80
>pdb|2HDN|B Chain B, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|D Chain D, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|F Chain F, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|H Chain H, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|J Chain J, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|L Chain L, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
Length = 335
Score = 37.7 bits (86), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Query: 59 AITMKSSSIALHYKDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQT--H 116
IT+ +S + +D PGH D+ + T A DGA+++V A +G QT H
Sbjct: 1 GITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREH 60
Query: 117 AVL-RQSWIEKLTPCLVLNKID 137
+L RQ + + + LNK D
Sbjct: 61 ILLGRQVGVPYI--IVFLNKCD 80
>pdb|2AHO|A Chain A, Structure Of The Archaeal Initiation Factor Eif2 Alpha-
Gamma Heterodimer From Sulfolobus Solfataricus Complexed
With Gdpnp
pdb|2PLF|A Chain A, The Structure Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Nucleotide-Free Form.
pdb|2QMU|A Chain A, Structure Of An Archaeal Heterotrimeric Initiation Factor
2 Reveals A Nucleotide State Between The Gtp And The Gdp
States
pdb|2QN6|A Chain A, Structure Of An Archaeal Heterotrimeric Initiation Factor
2 Reveals A Nucleotide State Between The Gtp And The Gdp
States
pdb|3V11|A Chain A, Structure Of The Ternary Initiation Complex
Aif2:gdpnp:methionylated Initiator Trna
Length = 414
Score = 37.0 bits (84), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 53/117 (45%), Gaps = 23/117 (19%)
Query: 11 NISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRF-----MDYLDE--------EQR 57
NI ++ HVDHGKTTL + G+ K + +L+ + Y + ++
Sbjct: 10 NIGVVGHVDHGKTTLVQAIT-----GIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKP 64
Query: 58 RAITMKSSSIALHYKD-----YAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVE 109
A + S + D I+ ID+PGH + + + A L DGA+++V A E
Sbjct: 65 EAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANE 121
>pdb|2PMD|A Chain A, The Structures Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Gdp-Bound Form.
pdb|2PMD|B Chain B, The Structures Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Gdp-Bound Form.
pdb|3CW2|A Chain A, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|B Chain B, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|E Chain E, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|F Chain F, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3I1F|A Chain A, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus In Complex With Gpp(Ch2)p
pdb|3I1F|B Chain B, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus In Complex With Gpp(Ch2)p
pdb|3P3M|A Chain A, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|B Chain B, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|C Chain C, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|D Chain D, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|E Chain E, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|F Chain F, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3QSY|A Chain A, Recognition Of The Methionylated Initiator Trna By The
Translation Initiation Factor 2 In Archaea
Length = 415
Score = 37.0 bits (84), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 53/117 (45%), Gaps = 23/117 (19%)
Query: 11 NISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRF-----MDYLDE--------EQR 57
NI ++ HVDHGKTTL + G+ K + +L+ + Y + ++
Sbjct: 11 NIGVVGHVDHGKTTLVQAIT-----GIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKP 65
Query: 58 RAITMKSSSIALHYKD-----YAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVE 109
A + S + D I+ ID+PGH + + + A L DGA+++V A E
Sbjct: 66 EAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANE 122
>pdb|3J2K|7 Chain 7, Cryo-Em Structure Of The Mammalian Erf1-Erf3-Associated
Termination Complex
Length = 439
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/115 (20%), Positives = 49/115 (42%), Gaps = 17/115 (14%)
Query: 11 NISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLR---------------FMDYLDEE 55
N+ + HVD GK+T+ ++ TG ++ + K +D EE
Sbjct: 19 NVVFIGHVDAGKSTIGGQIMYLTG--MVDKRTLEKYEREAKEKNRETWYLSWALDTNQEE 76
Query: 56 QRRAITMKSSSIALHYKDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEG 110
+ + T++ + ++D+PGH F + A +D A++++ A +G
Sbjct: 77 RDKGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKG 131
>pdb|3RMK|B Chain B, Toluene 4 Monooxygenase H With 4-bromophenol
pdb|3RMK|E Chain E, Toluene 4 Monooxygenase H With 4-bromophenol
Length = 306
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 19/102 (18%)
Query: 256 TKMIVGKKGISTGTKARPMFVQFVLEPLWQVYQAALEPDGDKGVLEKVIKS--------- 306
T G+ +S +PM V+ + +PL Q A E + +L +I S
Sbjct: 207 TAFDWGEAFVSLNLVVKPMIVESIFKPL---QQQAWE--NNDTLLPLLIDSQLKDAERHS 261
Query: 307 -FNLSIPRRELQNKDPKAVLQAVLSHWLPLSD----AILSMV 343
++ ++ + L+N D AV++ + W PL+D A LSM+
Sbjct: 262 RWSKALVKHALENPDNHAVIEGWIEKWRPLADRAAEAYLSML 303
>pdb|3Q14|B Chain B, Toluene 4 Monooxygenase Hd Complex With P-Cresol
pdb|3Q2A|B Chain B, Toluene 4 Monooxygenase Hd Complex With Inhibitor
P-Aminobenzoate
pdb|3Q3M|B Chain B, Toluene 4 Monooxygenase Hd Complex With Inhibitor
4-Bromobenzoate
pdb|3Q3M|F Chain F, Toluene 4 Monooxygenase Hd Complex With Inhibitor
4-Bromobenzoate
pdb|3Q3N|B Chain B, Toluene 4 Monooxygenase Hd Complex With P-Nitrophenol
pdb|3Q3O|B Chain B, Toluene 4 Monooxygenase Hd Complex With Phenol
Length = 307
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 19/102 (18%)
Query: 256 TKMIVGKKGISTGTKARPMFVQFVLEPLWQVYQAALEPDGDKGVLEKVIKS--------- 306
T G+ +S +PM V+ + +PL Q A E + +L +I S
Sbjct: 208 TAFDWGEAFVSLNLVVKPMIVESIFKPL---QQQAWE--NNDTLLPLLIDSQLKDAERHS 262
Query: 307 -FNLSIPRRELQNKDPKAVLQAVLSHWLPLSD----AILSMV 343
++ ++ + L+N D AV++ + W PL+D A LSM+
Sbjct: 263 RWSKALVKHALENPDNHAVIEGWIEKWRPLADRAAEAYLSML 304
>pdb|3RI7|B Chain B, Toluene 4 Monooxygenase Hd Mutant G103l
Length = 305
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 19/102 (18%)
Query: 256 TKMIVGKKGISTGTKARPMFVQFVLEPLWQVYQAALEPDGDKGVLEKVIKS--------- 306
T G+ +S +PM V+ + +PL Q A E + +L +I S
Sbjct: 207 TAFDWGEAFVSLNLVVKPMIVESIFKPL---QQQAWE--NNDTLLPLLIDSQLKDAERHS 261
Query: 307 -FNLSIPRRELQNKDPKAVLQAVLSHWLPLSD----AILSMV 343
++ ++ + L+N D AV++ + W PL+D A LSM+
Sbjct: 262 RWSKALVKHALENPDNHAVIEGWIEKWRPLADRAAEAYLSML 303
>pdb|3GE3|B Chain B, Crystal Structure Of The Reduced Toluene 4-Monooxygenase
Hd T201a Mutant Complex
pdb|3GE8|B Chain B, Toluene 4-Monooxygenase Hd T201a Diferric, Resting State
Complex
pdb|3GE8|F Chain F, Toluene 4-Monooxygenase Hd T201a Diferric, Resting State
Complex
pdb|3I5J|B Chain B, Diferric Resting State Toluene 4-Monooxygenase Hd Complex
pdb|3I63|B Chain B, Peroxide Bound Toluene 4-Monooxygenase
Length = 327
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 19/102 (18%)
Query: 256 TKMIVGKKGISTGTKARPMFVQFVLEPLWQVYQAALEPDGDKGVLEKVIKS--------- 306
T G+ +S +PM V+ + +PL Q A E + +L +I S
Sbjct: 208 TAFDWGEAFVSLNLVVKPMIVESIFKPL---QQQAWE--NNDTLLPLLIDSQLKDAERHS 262
Query: 307 -FNLSIPRRELQNKDPKAVLQAVLSHWLPLSD----AILSMV 343
++ ++ + L+N D AV++ + W PL+D A LSM+
Sbjct: 263 RWSKALVKHALENPDNHAVIEGWIEKWRPLADRAAEAYLSML 304
>pdb|3DHG|B Chain B, Crystal Struture Of Toluene 4-monoxygenase Hydroxylase
pdb|3DHG|E Chain E, Crystal Struture Of Toluene 4-monoxygenase Hydroxylase
pdb|3DHH|B Chain B, Crystal Structure Of Resting State Toluene 4-monoxygenase
Hydroxylase Complexed With Effector Protein
pdb|3DHI|B Chain B, Crystal Structure Of Reduced Toluene 4-monoxygenase
Hydroxylase Complexed With Effector Protein
Length = 327
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 19/102 (18%)
Query: 256 TKMIVGKKGISTGTKARPMFVQFVLEPLWQVYQAALEPDGDKGVLEKVIKS--------- 306
T G+ +S +PM V+ + +PL Q A E + +L +I S
Sbjct: 208 TAFDWGEAFVSLNLVVKPMIVESIFKPL---QQQAWE--NNDTLLPLLIDSQLKDAERHS 262
Query: 307 -FNLSIPRRELQNKDPKAVLQAVLSHWLPLSD----AILSMV 343
++ ++ + L+N D AV++ + W PL+D A LSM+
Sbjct: 263 RWSKALVKHALENPDNHAVIEGWIEKWRPLADRAAEAYLSML 304
>pdb|3MQM|A Chain A, Crystal Structure Of The Bromodomain Of Human Ash1l
pdb|3MQM|B Chain B, Crystal Structure Of The Bromodomain Of Human Ash1l
Length = 126
Score = 30.4 bits (67), Expect = 4.3, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 597 RFAKVSLEVSPPLVSYKETIEGDTSNPLQNVILLSGSSDYFEKTT-PNGRCVVRVQVMKL 655
R A++ E+ ++SYK++ + PL N+ ++DY+EK + P + Q++
Sbjct: 9 RLAQIFKEICDGIISYKDSSRQALAAPLLNLPPKKKNADYYEKISDPLDLITIEKQILTG 68
Query: 656 PFTVTKVLDECADLLGI 672
+ + D AD+L +
Sbjct: 69 YYKTVEAFD--ADMLKV 83
>pdb|3FWL|A Chain A, Crystal Structure Of The Full-Length Transglycosylase
Pbp1b From Escherichia Coli
Length = 751
Score = 30.0 bits (66), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 8/77 (10%)
Query: 454 QRVFVLSALYDPLKVESM----QKHIQEAELQSLYLMMGQGLKPVASAKAGNVV-AIRGL 508
QR+FV + + L V+++ +H E + SLY + G +A+ AG V L
Sbjct: 159 QRLFVPRSGFPDLLVDTLLATEDRHFYEHDGISLYSI---GRAVLANLTAGRTVQGASTL 215
Query: 509 GQQILKSATLSSTRNCW 525
QQ++K+ LSS R+ W
Sbjct: 216 TQQLVKNLFLSSERSYW 232
>pdb|3VMA|A Chain A, Crystal Structure Of The Full-Length Transglycosylase
Pbp1b From Escherichia Coli
Length = 768
Score = 29.6 bits (65), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 8/77 (10%)
Query: 454 QRVFVLSALYDPLKVESM----QKHIQEAELQSLYLMMGQGLKPVASAKAGNVV-AIRGL 508
QR+FV + + L V+++ +H E + SLY + G +A+ AG V L
Sbjct: 176 QRLFVPRSGFPDLLVDTLLATEDRHFYEHDGISLYSI---GRAVLANLTAGRTVQGASTL 232
Query: 509 GQQILKSATLSSTRNCW 525
QQ++K+ LSS R+ W
Sbjct: 233 TQQLVKNLFLSSERSYW 249
>pdb|2HCJ|A Chain A, "trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline"
pdb|2HDN|A Chain A, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|C Chain C, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|E Chain E, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|G Chain G, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|I Chain I, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|K Chain K, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
Length = 37
Score = 29.3 bits (64), Expect = 8.9, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Query: 11 NISILAHVDHGKTTLADHL---IAATGGG 36
N+ + HVDHGKTTL + +A T GG
Sbjct: 6 NVGTIGHVDHGKTTLTAAITTVLAKTYGG 34
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,517,852
Number of Sequences: 62578
Number of extensions: 973620
Number of successful extensions: 2474
Number of sequences better than 100.0: 92
Number of HSP's better than 100.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 2240
Number of HSP's gapped (non-prelim): 128
length of query: 876
length of database: 14,973,337
effective HSP length: 107
effective length of query: 769
effective length of database: 8,277,491
effective search space: 6365390579
effective search space used: 6365390579
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)