Query 047363
Match_columns 876
No_of_seqs 396 out of 2680
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 10:23:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047363.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047363hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0469 Elongation factor 2 [T 100.0 1E-152 3E-157 1232.9 41.0 668 5-846 15-701 (842)
2 KOG0468 U5 snRNP-specific prot 100.0 3E-132 7E-137 1103.1 50.1 671 4-847 123-804 (971)
3 KOG0467 Translation elongation 100.0 2E-129 5E-134 1101.3 43.1 714 1-840 1-717 (887)
4 PLN00116 translation elongatio 100.0 4E-118 8E-123 1092.6 64.8 663 4-841 14-696 (843)
5 PTZ00416 elongation factor 2; 100.0 2E-116 5E-121 1074.9 62.8 663 5-841 15-689 (836)
6 PRK07560 elongation factor EF- 100.0 3E-91 6.5E-96 846.6 55.7 573 5-841 16-594 (731)
7 COG0480 FusA Translation elong 100.0 8.7E-90 1.9E-94 811.5 48.7 496 6-659 7-519 (697)
8 TIGR00490 aEF-2 translation el 100.0 5.1E-88 1.1E-92 816.4 51.1 571 5-841 15-592 (720)
9 PRK12739 elongation factor G; 100.0 6E-82 1.3E-86 761.8 50.0 474 3-620 2-488 (691)
10 PRK00007 elongation factor G; 100.0 2.2E-81 4.8E-86 756.4 48.9 504 1-658 2-520 (693)
11 TIGR00484 EF-G translation elo 100.0 2.4E-78 5.1E-83 730.9 51.4 504 1-657 2-517 (689)
12 PRK13351 elongation factor G; 100.0 1.1E-77 2.3E-82 726.6 51.4 498 3-657 2-515 (687)
13 KOG0465 Mitochondrial elongati 100.0 2E-78 4.4E-83 673.9 30.0 495 7-658 37-548 (721)
14 PRK12740 elongation factor G; 100.0 3.1E-72 6.6E-77 677.9 48.1 484 15-658 1-499 (668)
15 KOG0464 Elongation factor G [T 100.0 1.4E-62 3E-67 523.2 18.0 470 5-619 33-539 (753)
16 PRK00741 prfC peptide chain re 100.0 1.4E-59 3E-64 547.2 36.5 443 6-618 7-473 (526)
17 TIGR00503 prfC peptide chain r 100.0 2E-57 4.3E-62 529.3 39.4 445 5-614 7-470 (527)
18 TIGR01394 TypA_BipA GTP-bindin 100.0 2.8E-54 6.1E-59 508.6 43.3 383 9-621 1-393 (594)
19 PRK10218 GTP-binding protein; 100.0 5.7E-54 1.2E-58 505.2 44.2 380 7-615 3-392 (607)
20 PRK05433 GTP-binding protein L 100.0 1.7E-51 3.8E-56 486.6 40.8 363 6-618 4-381 (600)
21 TIGR01393 lepA GTP-binding pro 100.0 2.9E-50 6.2E-55 475.8 42.4 361 7-618 1-377 (595)
22 COG1217 TypA Predicted membran 100.0 3.3E-50 7.3E-55 436.7 37.0 388 7-624 3-400 (603)
23 KOG0462 Elongation factor-type 100.0 1.9E-49 4.1E-54 438.7 28.4 363 7-616 58-431 (650)
24 COG0481 LepA Membrane GTPase L 100.0 2.7E-44 5.9E-49 391.9 31.2 368 2-618 2-383 (603)
25 COG4108 PrfC Peptide chain rel 100.0 2.3E-44 5E-49 390.0 27.6 440 7-607 10-464 (528)
26 cd01885 EF2 EF2 (for archaea a 100.0 4.1E-41 8.8E-46 352.6 20.9 199 10-231 1-209 (222)
27 cd01886 EF-G Elongation factor 100.0 6.3E-31 1.4E-35 283.9 20.9 259 11-350 1-270 (270)
28 CHL00071 tufA elongation facto 100.0 3E-29 6.5E-34 286.6 29.8 296 5-522 8-307 (409)
29 cd04167 Snu114p Snu114p subfam 100.0 5.8E-30 1.3E-34 267.6 20.1 193 10-232 1-201 (213)
30 cd01683 EF2_IV_snRNP EF-2_doma 100.0 1.4E-30 3.1E-35 263.1 13.1 141 607-841 1-142 (178)
31 cd04169 RF3 RF3 subfamily. Pe 100.0 1E-29 2.3E-34 274.1 19.9 253 8-350 1-267 (267)
32 PRK12736 elongation factor Tu; 100.0 2.4E-28 5.2E-33 277.9 29.8 133 6-140 9-142 (394)
33 cd04168 TetM_like Tet(M)-like 100.0 8.1E-30 1.8E-34 270.5 14.1 228 11-350 1-237 (237)
34 cd01681 aeEF2_snRNP_like_IV Th 100.0 8E-30 1.7E-34 258.8 12.9 142 607-842 1-143 (177)
35 PRK12735 elongation factor Tu; 100.0 6.8E-27 1.5E-31 266.2 29.4 133 6-140 9-142 (396)
36 TIGR00485 EF-Tu translation el 100.0 1.1E-26 2.3E-31 264.7 28.9 132 6-140 9-142 (394)
37 PLN03126 Elongation factor Tu; 100.0 1.3E-26 2.8E-31 267.7 29.0 133 6-140 78-211 (478)
38 PRK05306 infB translation init 100.0 3.1E-26 6.8E-31 275.9 32.9 314 6-586 287-628 (787)
39 PRK00049 elongation factor Tu; 100.0 3.5E-26 7.5E-31 260.3 29.9 132 6-140 9-142 (396)
40 PLN00043 elongation factor 1-a 99.9 3.3E-26 7.1E-31 263.3 29.0 152 7-166 5-179 (447)
41 PTZ00141 elongation factor 1- 99.9 1.3E-25 2.8E-30 258.6 29.9 151 7-165 5-178 (446)
42 cd04170 EF-G_bact Elongation f 99.9 1.6E-26 3.5E-31 250.0 19.9 257 11-350 1-268 (268)
43 PLN03127 Elongation factor Tu; 99.9 3.9E-25 8.5E-30 254.2 29.2 134 4-140 56-191 (447)
44 PRK12317 elongation factor 1-a 99.9 1.3E-24 2.9E-29 250.1 29.2 132 7-140 4-153 (425)
45 TIGR00487 IF-2 translation ini 99.9 6E-24 1.3E-28 251.0 32.3 117 7-141 85-202 (587)
46 PF00009 GTP_EFTU: Elongation 99.9 4E-26 8.8E-31 233.8 11.7 134 7-142 1-138 (188)
47 PRK05124 cysN sulfate adenylyl 99.9 3.2E-24 6.9E-29 248.8 27.8 132 7-140 25-174 (474)
48 TIGR02034 CysN sulfate adenyly 99.9 6.8E-24 1.5E-28 242.3 28.6 128 11-140 2-147 (406)
49 TIGR00483 EF-1_alpha translati 99.9 1.4E-23 3.1E-28 241.5 27.0 133 6-140 4-155 (426)
50 COG5256 TEF1 Translation elong 99.9 5.8E-23 1.2E-27 224.7 25.3 148 7-164 5-175 (428)
51 CHL00189 infB translation init 99.9 3.9E-23 8.4E-28 247.2 25.7 118 6-141 241-362 (742)
52 cd01884 EF_Tu EF-Tu subfamily. 99.9 1.3E-23 2.8E-28 216.6 16.0 128 10-139 3-131 (195)
53 COG0050 TufB GTPases - transla 99.9 3.4E-23 7.3E-28 215.5 18.2 133 6-140 9-142 (394)
54 PRK05506 bifunctional sulfate 99.9 6.3E-22 1.4E-26 238.2 29.3 130 9-140 24-171 (632)
55 PTZ00327 eukaryotic translatio 99.9 7.4E-22 1.6E-26 226.8 26.9 118 8-140 33-185 (460)
56 KOG0460 Mitochondrial translat 99.9 1.4E-22 3E-27 214.4 15.6 129 9-140 54-184 (449)
57 PRK04000 translation initiatio 99.9 7.8E-21 1.7E-25 217.3 28.8 120 6-140 6-153 (411)
58 cd01883 EF1_alpha Eukaryotic e 99.9 4.1E-22 8.8E-27 209.4 15.2 129 11-141 1-152 (219)
59 PRK10512 selenocysteinyl-tRNA- 99.9 8.5E-21 1.8E-25 225.9 27.1 115 11-140 2-118 (614)
60 TIGR03680 eif2g_arch translati 99.9 4.5E-20 9.7E-25 211.1 29.2 118 8-140 3-148 (406)
61 TIGR00475 selB selenocysteine- 99.8 1.4E-19 3E-24 214.9 27.2 115 11-140 2-117 (581)
62 cd04166 CysN_ATPS CysN_ATPS su 99.8 4E-21 8.7E-26 200.2 11.5 128 11-140 1-144 (208)
63 cd01891 TypA_BipA TypA (tyrosi 99.8 4.4E-20 9.5E-25 190.0 18.1 132 8-141 1-132 (194)
64 KOG0458 Elongation factor 1 al 99.8 1.6E-18 3.4E-23 196.0 22.3 151 5-165 173-346 (603)
65 cd01890 LepA LepA subfamily. 99.8 4.3E-19 9.3E-24 179.2 15.2 128 10-140 1-133 (179)
66 PRK04004 translation initiatio 99.8 6.6E-18 1.4E-22 200.3 25.6 127 7-139 4-136 (586)
67 COG5257 GCD11 Translation init 99.8 1.2E-17 2.6E-22 176.4 22.7 121 7-142 8-156 (415)
68 cd01888 eIF2_gamma eIF2-gamma 99.8 1.9E-18 4.2E-23 179.4 15.4 116 10-140 1-151 (203)
69 COG2895 CysN GTPases - Sulfate 99.8 2.2E-18 4.9E-23 184.1 15.0 133 8-142 5-155 (431)
70 cd01889 SelB_euk SelB subfamil 99.8 2.8E-18 6.1E-23 176.3 11.7 119 11-140 2-134 (192)
71 PF14492 EFG_II: Elongation Fa 99.8 2.3E-18 5E-23 149.9 8.7 73 534-607 2-75 (75)
72 cd00881 GTP_translation_factor 99.7 2.9E-17 6.3E-22 166.4 17.2 128 11-140 1-128 (189)
73 COG3276 SelB Selenocysteine-sp 99.7 5.2E-17 1.1E-21 179.5 20.2 116 11-141 2-118 (447)
74 COG0532 InfB Translation initi 99.7 8.9E-18 1.9E-22 190.0 11.4 127 7-155 3-132 (509)
75 KOG1145 Mitochondrial translat 99.7 1.6E-17 3.4E-22 185.7 11.2 126 7-154 151-277 (683)
76 TIGR00491 aIF-2 translation in 99.7 9.3E-16 2E-20 181.4 25.3 127 8-140 3-135 (590)
77 cd04090 eEF2_II_snRNP Loc2 eEF 99.7 5.4E-17 1.2E-21 147.8 10.8 94 398-520 1-94 (94)
78 cd04165 GTPBP1_like GTPBP1-lik 99.7 7.1E-17 1.5E-21 170.2 13.0 125 11-140 1-152 (224)
79 cd04171 SelB SelB subfamily. 99.7 3.9E-16 8.3E-21 154.5 12.6 115 11-140 2-118 (164)
80 COG5258 GTPBP1 GTPase [General 99.6 1E-13 2.3E-18 149.5 21.7 131 6-141 114-270 (527)
81 cd03690 Tet_II Tet_II: This su 99.6 7.3E-15 1.6E-19 131.2 10.4 83 396-519 2-84 (85)
82 cd01887 IF2_eIF5B IF2/eIF5B (i 99.6 2.3E-14 5E-19 142.6 13.7 113 10-140 1-116 (168)
83 PRK00093 GTP-binding protein D 99.6 5.2E-14 1.1E-18 162.9 18.3 115 8-139 172-297 (435)
84 TIGR03594 GTPase_EngA ribosome 99.6 3.4E-14 7.3E-19 164.1 16.4 115 8-139 171-296 (429)
85 cd04092 mtEFG2_II_like mtEFG2_ 99.6 1.5E-14 3.3E-19 128.6 10.0 83 398-520 1-83 (83)
86 KOG0461 Selenocysteine-specifi 99.5 2.6E-14 5.7E-19 152.0 11.2 139 10-159 8-156 (522)
87 cd03700 eEF2_snRNP_like_II EF2 99.5 3.8E-14 8.2E-19 128.8 10.3 84 398-510 1-84 (93)
88 COG1160 Predicted GTPases [Gen 99.5 1.8E-13 4E-18 153.0 17.2 117 8-141 177-304 (444)
89 cd01894 EngA1 EngA1 subfamily. 99.5 7.7E-14 1.7E-18 136.8 10.5 112 13-141 1-120 (157)
90 cd04088 EFG_mtEFG_II EFG_mtEFG 99.5 1.1E-13 2.5E-18 122.9 10.0 82 398-519 1-82 (83)
91 COG1159 Era GTPase [General fu 99.5 1E-13 2.2E-18 147.6 10.4 118 8-142 5-130 (298)
92 cd04160 Arfrp1 Arfrp1 subfamil 99.5 1.1E-13 2.4E-18 137.9 10.0 116 11-140 1-121 (167)
93 cd01895 EngA2 EngA2 subfamily. 99.5 2.8E-13 6.1E-18 134.6 12.9 116 9-141 2-128 (174)
94 PRK14845 translation initiatio 99.5 1.8E-12 3.9E-17 160.4 22.3 100 22-139 474-591 (1049)
95 PRK03003 GTP-binding protein D 99.5 7.6E-13 1.6E-17 154.6 16.9 117 7-140 209-336 (472)
96 COG2229 Predicted GTPase [Gene 99.5 3.3E-13 7.1E-18 133.8 11.3 138 9-157 10-149 (187)
97 cd04091 mtEFG1_II_like mtEFG1_ 99.5 3.5E-13 7.5E-18 119.3 10.3 80 398-519 1-80 (81)
98 KOG0459 Polypeptide release fa 99.5 2.9E-13 6.2E-18 147.2 11.4 138 5-144 75-235 (501)
99 COG1160 Predicted GTPases [Gen 99.5 2.8E-13 6.1E-18 151.5 11.5 114 10-140 4-126 (444)
100 cd01864 Rab19 Rab19 subfamily. 99.4 5.3E-13 1.2E-17 133.1 12.3 116 8-141 2-123 (165)
101 cd04105 SR_beta Signal recogni 99.4 2E-12 4.4E-17 134.4 16.2 129 10-162 1-142 (203)
102 cd03691 BipA_TypA_II BipA_TypA 99.4 7E-13 1.5E-17 118.6 10.7 85 398-519 1-85 (86)
103 PF02421 FeoB_N: Ferrous iron 99.4 9.9E-13 2.2E-17 130.3 11.9 111 11-141 2-120 (156)
104 TIGR03598 GTPase_YsxC ribosome 99.4 6.7E-13 1.4E-17 134.9 10.9 117 5-140 14-143 (179)
105 PRK15494 era GTPase Era; Provi 99.4 4.5E-13 9.7E-18 149.9 10.4 116 8-140 51-174 (339)
106 cd03689 RF3_II RF3_II: this su 99.4 7.8E-13 1.7E-17 118.1 9.8 68 439-520 17-84 (85)
107 PRK03003 GTP-binding protein D 99.4 9.1E-13 2E-17 153.9 12.6 117 7-140 36-160 (472)
108 PRK09518 bifunctional cytidyla 99.4 2.8E-12 6.1E-17 156.8 16.5 117 7-140 448-575 (712)
109 TIGR03594 GTPase_EngA ribosome 99.4 7.4E-13 1.6E-17 153.0 10.9 114 11-141 1-122 (429)
110 cd04113 Rab4 Rab4 subfamily. 99.4 2E-12 4.3E-17 128.2 12.1 114 11-140 2-119 (161)
111 cd04124 RabL2 RabL2 subfamily. 99.4 1.6E-12 3.6E-17 129.4 11.3 113 11-139 2-117 (161)
112 cd01898 Obg Obg subfamily. Th 99.4 2.1E-12 4.6E-17 128.9 11.4 112 11-140 2-128 (170)
113 cd04145 M_R_Ras_like M-Ras/R-R 99.4 3.1E-12 6.8E-17 126.7 12.4 114 10-140 3-121 (164)
114 cd04164 trmE TrmE (MnmE, ThdF, 99.4 2.1E-12 4.6E-17 126.4 11.0 112 11-141 3-122 (157)
115 PRK00093 GTP-binding protein D 99.4 1.9E-12 4.2E-17 149.9 11.9 113 10-139 2-122 (435)
116 cd01866 Rab2 Rab2 subfamily. 99.4 5.5E-12 1.2E-16 126.4 13.0 116 9-140 4-123 (168)
117 cd04157 Arl6 Arl6 subfamily. 99.4 2.2E-12 4.8E-17 127.6 10.0 111 11-140 1-118 (162)
118 cd04154 Arl2 Arl2 subfamily. 99.4 3.3E-12 7.2E-17 128.7 11.4 113 7-140 12-129 (173)
119 cd04115 Rab33B_Rab33A Rab33B/R 99.4 3.4E-12 7.3E-17 128.3 11.3 117 8-140 1-123 (170)
120 cd01879 FeoB Ferrous iron tran 99.4 2E-12 4.2E-17 127.2 9.3 108 14-141 1-116 (158)
121 cd00878 Arf_Arl Arf (ADP-ribos 99.4 3.3E-12 7.1E-17 126.2 10.8 110 11-141 1-115 (158)
122 cd01867 Rab8_Rab10_Rab13_like 99.4 7E-12 1.5E-16 125.5 13.4 117 8-140 2-122 (167)
123 cd04114 Rab30 Rab30 subfamily. 99.4 4.4E-12 9.5E-17 126.6 11.8 116 7-140 5-126 (169)
124 cd01862 Rab7 Rab7 subfamily. 99.3 6.6E-12 1.4E-16 125.4 12.7 114 11-140 2-123 (172)
125 TIGR00436 era GTP-binding prot 99.3 3.4E-12 7.3E-17 138.6 11.2 111 11-139 2-120 (270)
126 cd04106 Rab23_lke Rab23-like s 99.3 8.3E-12 1.8E-16 123.6 12.9 114 11-140 2-120 (162)
127 TIGR00231 small_GTP small GTP- 99.3 1.6E-12 3.4E-17 126.0 7.1 113 10-141 2-123 (161)
128 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.3 1E-11 2.2E-16 123.8 13.1 117 9-141 2-122 (166)
129 smart00175 RAB Rab subfamily o 99.3 6.9E-12 1.5E-16 124.1 11.8 114 11-140 2-119 (164)
130 cd04151 Arl1 Arl1 subfamily. 99.3 4.5E-12 9.9E-17 125.5 10.4 110 11-141 1-115 (158)
131 PRK09518 bifunctional cytidyla 99.3 5.7E-12 1.2E-16 154.1 13.4 119 5-140 271-397 (712)
132 cd04122 Rab14 Rab14 subfamily. 99.3 9.2E-12 2E-16 124.4 12.6 117 9-141 2-122 (166)
133 cd04161 Arl2l1_Arl13_like Arl2 99.3 6.1E-12 1.3E-16 126.3 11.1 110 11-141 1-115 (167)
134 cd01897 NOG NOG1 is a nucleola 99.3 8.7E-12 1.9E-16 124.3 11.9 113 10-140 1-127 (168)
135 KOG1144 Translation initiation 99.3 2.2E-12 4.8E-17 148.2 8.4 128 9-140 475-606 (1064)
136 smart00173 RAS Ras subfamily o 99.3 8.8E-12 1.9E-16 123.8 11.8 113 11-140 2-119 (164)
137 cd04107 Rab32_Rab38 Rab38/Rab3 99.3 1.3E-11 2.9E-16 127.7 13.3 114 11-140 2-124 (201)
138 cd04162 Arl9_Arfrp2_like Arl9/ 99.3 8.1E-12 1.7E-16 125.2 11.3 110 12-141 2-114 (164)
139 cd01860 Rab5_related Rab5-rela 99.3 1.1E-11 2.4E-16 122.8 11.9 114 11-140 3-120 (163)
140 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.3 1.3E-11 2.9E-16 124.6 12.6 112 8-140 14-130 (174)
141 cd04147 Ras_dva Ras-dva subfam 99.3 8.2E-12 1.8E-16 129.0 11.1 112 11-141 1-119 (198)
142 cd04163 Era Era subfamily. Er 99.3 1.4E-11 3E-16 121.1 12.3 115 9-140 3-125 (168)
143 cd04138 H_N_K_Ras_like H-Ras/N 99.3 1.4E-11 2.9E-16 121.5 12.0 113 11-140 3-120 (162)
144 cd01863 Rab18 Rab18 subfamily. 99.3 1.3E-11 2.9E-16 122.1 11.9 114 11-140 2-120 (161)
145 cd04119 RJL RJL (RabJ-Like) su 99.3 1.8E-11 3.8E-16 121.4 12.8 114 11-140 2-124 (168)
146 smart00178 SAR Sar1p-like memb 99.3 1.2E-11 2.5E-16 126.4 11.7 113 7-140 15-132 (184)
147 cd00154 Rab Rab family. Rab G 99.3 1.6E-11 3.5E-16 119.7 12.0 113 11-139 2-118 (159)
148 cd04146 RERG_RasL11_like RERG/ 99.3 1.2E-11 2.5E-16 123.4 11.2 113 11-140 1-120 (165)
149 PF01926 MMR_HSR1: 50S ribosom 99.3 1.2E-11 2.6E-16 116.4 10.7 107 11-135 1-116 (116)
150 PRK09554 feoB ferrous iron tra 99.3 1.1E-11 2.3E-16 151.5 13.0 111 10-140 4-126 (772)
151 cd01861 Rab6 Rab6 subfamily. 99.3 1.3E-11 2.8E-16 122.1 11.1 112 10-139 1-118 (161)
152 PRK00089 era GTPase Era; Revie 99.3 1.1E-11 2.5E-16 135.9 11.7 115 8-139 4-126 (292)
153 cd00879 Sar1 Sar1 subfamily. 99.3 1.3E-11 2.8E-16 126.1 11.2 112 8-140 18-134 (190)
154 PTZ00369 Ras-like protein; Pro 99.3 1.5E-11 3.2E-16 126.1 11.6 115 9-140 5-124 (189)
155 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.3 9.1E-12 2E-16 127.1 9.8 114 10-140 4-123 (183)
156 cd04116 Rab9 Rab9 subfamily. 99.3 2.7E-11 5.8E-16 121.3 13.0 116 8-139 4-127 (170)
157 cd01893 Miro1 Miro1 subfamily. 99.3 2E-11 4.3E-16 122.2 12.0 113 11-141 2-118 (166)
158 cd04110 Rab35 Rab35 subfamily. 99.3 3.1E-11 6.7E-16 124.9 13.6 118 7-140 4-124 (199)
159 cd04140 ARHI_like ARHI subfami 99.3 1.5E-11 3.3E-16 122.8 11.0 114 10-140 2-122 (165)
160 cd04120 Rab12 Rab12 subfamily. 99.3 1.6E-11 3.5E-16 127.6 11.4 114 11-140 2-119 (202)
161 PRK15467 ethanolamine utilizat 99.3 1.3E-11 2.9E-16 123.1 10.2 100 10-140 2-105 (158)
162 cd01882 BMS1 Bms1. Bms1 is an 99.3 8.1E-11 1.7E-15 124.4 16.7 108 8-140 38-147 (225)
163 PLN03118 Rab family protein; P 99.3 3.6E-11 7.8E-16 125.5 13.9 115 9-140 14-134 (211)
164 PRK00454 engB GTP-binding prot 99.3 3.7E-11 8.1E-16 123.1 13.6 121 2-141 17-150 (196)
165 cd01878 HflX HflX subfamily. 99.3 2.4E-11 5.3E-16 125.8 12.3 117 7-141 39-168 (204)
166 cd01865 Rab3 Rab3 subfamily. 99.3 1.8E-11 3.8E-16 122.3 10.8 115 10-140 2-120 (165)
167 cd00877 Ran Ran (Ras-related n 99.3 1.7E-11 3.7E-16 123.0 10.7 113 11-139 2-117 (166)
168 PRK04213 GTP-binding protein; 99.3 2.4E-11 5.3E-16 125.4 12.1 118 1-140 1-144 (201)
169 cd03699 lepA_II lepA_II: This 99.3 2.2E-11 4.9E-16 109.0 10.1 81 398-519 1-85 (86)
170 cd04123 Rab21 Rab21 subfamily. 99.3 3.9E-11 8.5E-16 118.2 12.8 114 11-140 2-119 (162)
171 cd01868 Rab11_like Rab11-like. 99.3 4.2E-11 9.1E-16 119.1 13.0 116 9-140 3-122 (165)
172 TIGR00450 mnmE_trmE_thdF tRNA 99.3 2.2E-11 4.8E-16 140.6 12.5 113 10-140 204-324 (442)
173 cd04149 Arf6 Arf6 subfamily. 99.3 2.7E-11 5.9E-16 121.9 11.4 111 9-140 9-124 (168)
174 cd04159 Arl10_like Arl10-like 99.3 2.8E-11 6.1E-16 118.1 11.2 109 12-140 2-115 (159)
175 KOG0084 GTPase Rab1/YPT1, smal 99.3 2.5E-11 5.3E-16 121.6 10.6 121 5-141 5-129 (205)
176 cd04136 Rap_like Rap-like subf 99.3 2.3E-11 5.1E-16 120.4 10.4 114 10-140 2-120 (163)
177 cd04127 Rab27A Rab27a subfamil 99.3 5.5E-11 1.2E-15 120.2 13.3 117 8-140 3-134 (180)
178 cd04137 RheB Rheb (Ras Homolog 99.3 2.1E-11 4.5E-16 123.4 10.2 114 10-140 2-120 (180)
179 cd00880 Era_like Era (E. coli 99.3 2.5E-11 5.5E-16 117.6 10.3 111 14-141 1-119 (163)
180 cd04139 RalA_RalB RalA/RalB su 99.2 2.1E-11 4.5E-16 120.5 9.6 113 11-140 2-119 (164)
181 PLN03110 Rab GTPase; Provision 99.2 3.7E-11 8E-16 126.1 11.8 121 4-140 7-131 (216)
182 PRK05291 trmE tRNA modificatio 99.2 2.5E-11 5.3E-16 140.8 11.4 112 10-140 216-335 (449)
183 PF09439 SRPRB: Signal recogni 99.2 2.1E-11 4.6E-16 123.4 9.5 131 9-164 3-147 (181)
184 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.2 4.1E-11 8.9E-16 121.1 11.6 114 10-140 3-121 (172)
185 cd04177 RSR1 RSR1 subgroup. R 99.2 5.6E-11 1.2E-15 119.1 12.3 113 11-140 3-120 (168)
186 cd04108 Rab36_Rab34 Rab34/Rab3 99.2 5.7E-11 1.2E-15 119.8 12.4 114 11-140 2-120 (170)
187 cd04176 Rap2 Rap2 subgroup. T 99.2 2.9E-11 6.2E-16 120.1 10.1 113 11-140 3-120 (163)
188 cd04175 Rap1 Rap1 subgroup. T 99.2 4.3E-11 9.3E-16 119.1 10.9 113 11-140 3-120 (164)
189 TIGR02528 EutP ethanolamine ut 99.2 2E-11 4.4E-16 118.6 8.3 98 10-140 1-102 (142)
190 cd04150 Arf1_5_like Arf1-Arf5- 99.2 7.7E-11 1.7E-15 117.4 12.7 109 11-140 2-115 (159)
191 PLN00223 ADP-ribosylation fact 99.2 6.6E-11 1.4E-15 120.7 12.4 112 8-140 16-132 (181)
192 cd04158 ARD1 ARD1 subfamily. 99.2 5E-11 1.1E-15 119.8 11.2 109 11-140 1-114 (169)
193 cd04121 Rab40 Rab40 subfamily. 99.2 1.1E-10 2.4E-15 120.1 13.8 119 6-140 3-124 (189)
194 cd00876 Ras Ras family. The R 99.2 7.6E-11 1.6E-15 115.9 11.4 113 11-140 1-118 (160)
195 cd04155 Arl3 Arl3 subfamily. 99.2 4.5E-11 9.9E-16 119.9 10.0 113 7-140 12-129 (173)
196 PLN03071 GTP-binding nuclear p 99.2 5.3E-11 1.2E-15 125.2 10.9 118 7-140 11-131 (219)
197 cd04156 ARLTS1 ARLTS1 subfamil 99.2 4.3E-11 9.4E-16 118.3 9.6 110 11-140 1-115 (160)
198 cd00157 Rho Rho (Ras homology) 99.2 3.6E-11 7.8E-16 120.0 9.0 114 11-141 2-119 (171)
199 cd04112 Rab26 Rab26 subfamily. 99.2 4.4E-11 9.6E-16 122.8 9.9 115 11-140 2-120 (191)
200 cd04144 Ras2 Ras2 subfamily. 99.2 4.5E-11 9.7E-16 122.7 9.9 113 11-140 1-120 (190)
201 cd04142 RRP22 RRP22 subfamily. 99.2 4.5E-11 9.7E-16 123.9 9.9 114 11-140 2-130 (198)
202 cd04126 Rab20 Rab20 subfamily. 99.2 1.4E-10 3E-15 122.1 13.5 109 11-140 2-114 (220)
203 cd04135 Tc10 TC10 subfamily. 99.2 2.9E-11 6.4E-16 121.4 8.0 113 11-140 2-118 (174)
204 smart00177 ARF ARF-like small 99.2 8.9E-11 1.9E-15 118.9 11.2 111 9-140 13-128 (175)
205 cd01881 Obg_like The Obg-like 99.2 5.4E-11 1.2E-15 119.1 9.4 110 14-141 1-135 (176)
206 PF08477 Miro: Miro-like prote 99.2 3.7E-11 8E-16 113.1 7.6 113 11-137 1-119 (119)
207 cd04101 RabL4 RabL4 (Rab-like4 99.2 1.1E-10 2.3E-15 116.0 11.2 116 11-140 2-121 (164)
208 cd04118 Rab24 Rab24 subfamily. 99.2 8.6E-11 1.9E-15 120.5 10.4 115 11-140 2-119 (193)
209 PLN03108 Rab family protein; P 99.2 2.5E-10 5.5E-15 119.2 13.9 118 7-140 4-125 (210)
210 smart00176 RAN Ran (Ras-relate 99.2 7.4E-11 1.6E-15 122.4 9.6 110 15-140 1-113 (200)
211 cd04132 Rho4_like Rho4-like su 99.2 1.2E-10 2.5E-15 118.8 10.3 113 11-140 2-119 (187)
212 cd04125 RabA_like RabA-like su 99.2 1.1E-10 2.5E-15 119.2 10.1 114 11-140 2-119 (188)
213 TIGR03156 GTP_HflX GTP-binding 99.2 1.1E-10 2.4E-15 131.1 10.8 115 8-140 188-315 (351)
214 KOG0090 Signal recognition par 99.2 2.4E-10 5.1E-15 115.8 12.0 134 9-166 38-182 (238)
215 smart00174 RHO Rho (Ras homolo 99.2 7.7E-11 1.7E-15 118.3 8.6 112 12-140 1-116 (174)
216 PRK12299 obgE GTPase CgtA; Rev 99.2 2E-10 4.4E-15 128.1 12.7 115 9-141 158-286 (335)
217 cd04134 Rho3 Rho3 subfamily. 99.1 8.1E-11 1.7E-15 120.7 8.5 114 10-140 1-118 (189)
218 cd04143 Rhes_like Rhes_like su 99.1 1.7E-10 3.7E-15 123.6 11.4 113 11-140 2-127 (247)
219 cd01874 Cdc42 Cdc42 subfamily. 99.1 1.2E-10 2.5E-15 118.2 9.5 114 10-140 2-119 (175)
220 PTZ00133 ADP-ribosylation fact 99.1 2.2E-10 4.7E-15 117.0 11.6 111 9-140 17-132 (182)
221 COG0218 Predicted GTPase [Gene 99.1 2E-10 4.3E-15 116.6 10.9 121 2-141 17-150 (200)
222 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.1 1.6E-10 3.5E-15 118.2 10.4 115 8-139 4-122 (182)
223 cd01875 RhoG RhoG subfamily. 99.1 1.4E-10 3.1E-15 119.2 10.0 114 10-140 4-121 (191)
224 cd04109 Rab28 Rab28 subfamily. 99.1 2E-10 4.4E-15 120.3 11.2 114 11-140 2-123 (215)
225 cd04102 RabL3 RabL3 (Rab-like3 99.1 4.3E-10 9.3E-15 116.9 13.3 114 11-140 2-143 (202)
226 cd04131 Rnd Rnd subfamily. Th 99.1 2.7E-10 5.9E-15 116.0 11.4 113 11-140 3-119 (178)
227 PRK12298 obgE GTPase CgtA; Rev 99.1 3.7E-10 7.9E-15 128.4 13.6 114 9-140 159-289 (390)
228 PTZ00132 GTP-binding nuclear p 99.1 3.5E-10 7.6E-15 118.3 12.4 124 1-140 1-127 (215)
229 PRK11058 GTPase HflX; Provisio 99.1 1.9E-10 4.1E-15 132.2 11.1 115 8-140 196-323 (426)
230 cd04128 Spg1 Spg1p. Spg1p (se 99.1 2.6E-10 5.6E-15 116.5 11.0 113 11-140 2-118 (182)
231 cd01892 Miro2 Miro2 subfamily. 99.1 2.2E-10 4.8E-15 115.3 10.2 118 7-140 2-122 (169)
232 cd01871 Rac1_like Rac1-like su 99.1 1.8E-10 3.9E-15 116.7 9.4 113 11-140 3-119 (174)
233 cd00882 Ras_like_GTPase Ras-li 99.1 1.3E-10 2.9E-15 110.9 7.8 113 14-142 1-118 (157)
234 cd04130 Wrch_1 Wrch-1 subfamil 99.1 1.5E-10 3.2E-15 116.7 8.3 113 11-140 2-118 (173)
235 KOG1423 Ras-like GTPase ERA [C 99.1 2.3E-10 5E-15 121.3 10.0 117 7-140 70-199 (379)
236 cd01870 RhoA_like RhoA-like su 99.1 1.5E-10 3.2E-15 116.4 8.2 114 10-140 2-119 (175)
237 KOG0078 GTP-binding protein SE 99.1 7.8E-10 1.7E-14 112.4 13.3 121 4-140 7-131 (207)
238 cd04133 Rop_like Rop subfamily 99.1 2E-10 4.2E-15 116.9 9.0 114 10-140 2-119 (176)
239 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.1 4.1E-10 8.8E-15 112.5 10.7 121 5-141 18-143 (221)
240 cd01852 AIG1 AIG1 (avrRpt2-ind 99.1 5.4E-10 1.2E-14 115.4 12.3 115 10-141 1-131 (196)
241 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.1 6.5E-10 1.4E-14 117.9 13.0 113 10-139 14-130 (232)
242 KOG0080 GTPase Rab18, small G 99.1 2.3E-10 5E-15 110.4 8.4 118 7-140 9-131 (209)
243 COG0486 ThdF Predicted GTPase 99.1 5E-10 1.1E-14 126.1 12.4 115 10-142 218-340 (454)
244 TIGR02729 Obg_CgtA Obg family 99.1 4.7E-10 1E-14 125.0 12.1 114 9-140 157-287 (329)
245 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.1 2.8E-10 6.1E-15 119.9 9.8 114 10-140 2-119 (222)
246 PRK12296 obgE GTPase CgtA; Rev 99.1 8.9E-10 1.9E-14 127.7 14.5 114 9-140 159-298 (500)
247 cd04117 Rab15 Rab15 subfamily. 99.1 4.2E-10 9.2E-15 112.1 10.3 114 11-140 2-119 (161)
248 cd04111 Rab39 Rab39 subfamily. 99.1 4.8E-10 1E-14 117.3 10.5 115 10-140 3-123 (211)
249 PRK12297 obgE GTPase CgtA; Rev 99.1 7.6E-10 1.7E-14 126.6 12.6 113 9-139 158-287 (424)
250 PLN00023 GTP-binding protein; 99.1 7E-10 1.5E-14 121.6 11.7 119 6-140 18-165 (334)
251 PF10662 PduV-EutP: Ethanolami 99.1 7.8E-10 1.7E-14 107.6 10.4 98 9-139 1-102 (143)
252 PF00071 Ras: Ras family; Int 99.0 2.4E-09 5.2E-14 106.0 13.3 123 11-150 1-127 (162)
253 PF00025 Arf: ADP-ribosylation 99.0 1E-09 2.3E-14 111.3 10.4 114 7-141 12-130 (175)
254 cd04148 RGK RGK subfamily. Th 99.0 8.8E-10 1.9E-14 116.2 10.2 113 11-140 2-120 (221)
255 cd01850 CDC_Septin CDC/Septin. 99.0 2.6E-09 5.7E-14 116.3 13.7 122 10-140 5-157 (276)
256 PF03764 EFG_IV: Elongation fa 99.0 2.7E-10 5.8E-15 108.4 5.2 70 729-841 26-96 (120)
257 COG1084 Predicted GTPase [Gene 99.0 2.6E-09 5.7E-14 115.1 12.5 116 8-141 167-295 (346)
258 KOG0394 Ras-related GTPase [Ge 99.0 1.2E-09 2.6E-14 108.2 8.5 125 1-141 1-133 (210)
259 TIGR00437 feoB ferrous iron tr 99.0 1.7E-09 3.6E-14 129.4 10.7 105 16-140 1-113 (591)
260 KOG0466 Translation initiation 99.0 4E-10 8.8E-15 118.7 4.7 120 8-142 37-195 (466)
261 KOG0095 GTPase Rab30, small G 99.0 5.1E-09 1.1E-13 99.9 11.6 118 7-140 5-126 (213)
262 KOG1532 GTPase XAB1, interacts 99.0 4E-09 8.7E-14 110.3 11.8 204 6-235 16-270 (366)
263 KOG0098 GTPase Rab2, small G p 99.0 2.2E-09 4.8E-14 106.5 9.1 118 8-141 5-126 (216)
264 KOG0092 GTPase Rab5/YPT51 and 98.9 1.8E-09 4E-14 107.9 8.1 116 9-140 5-124 (200)
265 cd01876 YihA_EngB The YihA (En 98.9 2.7E-09 5.7E-14 105.2 9.2 110 12-140 2-124 (170)
266 KOG0079 GTP-binding protein H- 98.9 2.6E-09 5.5E-14 101.9 8.2 118 8-141 7-127 (198)
267 cd04103 Centaurin_gamma Centau 98.9 6.6E-09 1.4E-13 103.6 11.4 106 11-139 2-112 (158)
268 cd01896 DRG The developmentall 98.9 6.7E-09 1.5E-13 110.4 11.7 82 11-110 2-90 (233)
269 KOG0086 GTPase Rab4, small G p 98.9 4E-09 8.6E-14 101.0 8.6 118 7-140 7-128 (214)
270 cd04104 p47_IIGP_like p47 (47- 98.9 9.3E-09 2E-13 106.4 11.1 115 10-141 2-122 (197)
271 KOG0073 GTP-binding ADP-ribosy 98.9 5.8E-09 1.3E-13 101.5 8.8 112 8-140 15-131 (185)
272 cd04129 Rho2 Rho2 subfamily. 98.9 5.3E-09 1.2E-13 107.0 9.1 114 10-140 2-119 (187)
273 COG1100 GTPase SAR1 and relate 98.8 1.2E-08 2.6E-13 106.5 10.4 115 10-141 6-126 (219)
274 KOG0087 GTPase Rab11/YPT3, sma 98.8 9.9E-09 2.1E-13 104.1 8.4 118 7-140 12-133 (222)
275 cd01873 RhoBTB RhoBTB subfamil 98.8 2.1E-08 4.5E-13 103.7 11.0 67 72-140 64-134 (195)
276 PF03144 GTP_EFTU_D2: Elongati 98.8 3.5E-09 7.7E-14 91.7 4.1 73 439-519 2-74 (74)
277 cd01680 EFG_like_IV Elongation 98.8 1.5E-08 3.3E-13 95.7 8.5 40 803-842 54-93 (116)
278 KOG0093 GTPase Rab3, small G p 98.8 3.3E-08 7.1E-13 94.4 9.7 117 8-140 20-140 (193)
279 COG0370 FeoB Fe2+ transport sy 98.8 6.2E-08 1.4E-12 113.7 13.5 111 10-140 4-122 (653)
280 KOG1489 Predicted GTP-binding 98.7 2.9E-08 6.3E-13 106.3 9.5 117 8-142 195-328 (366)
281 cd01853 Toc34_like Toc34-like 98.7 1.6E-07 3.5E-12 100.7 15.2 119 7-142 29-165 (249)
282 KOG0395 Ras-related GTPase [Ge 98.7 1.7E-08 3.6E-13 104.4 6.9 115 9-140 3-122 (196)
283 KOG1191 Mitochondrial GTPase [ 98.7 7.6E-08 1.6E-12 108.4 10.8 110 10-136 269-387 (531)
284 COG3596 Predicted GTPase [Gene 98.6 3.8E-07 8.1E-12 96.6 14.1 117 8-141 38-163 (296)
285 KOG0075 GTP-binding ADP-ribosy 98.6 2.5E-08 5.5E-13 95.3 4.0 111 11-141 22-137 (186)
286 COG2262 HflX GTPases [General 98.6 1.6E-07 3.5E-12 104.4 10.7 118 6-141 189-319 (411)
287 KOG0088 GTPase Rab21, small G 98.6 4.1E-08 8.8E-13 94.8 4.8 116 9-140 13-132 (218)
288 KOG0070 GTP-binding ADP-ribosy 98.6 5.4E-08 1.2E-12 97.2 5.8 123 8-154 16-143 (181)
289 PF04670 Gtr1_RagA: Gtr1/RagA 98.6 3.1E-07 6.8E-12 97.1 11.9 116 11-143 1-128 (232)
290 PRK09866 hypothetical protein; 98.6 4.6E-07 1E-11 106.0 14.2 68 73-140 229-303 (741)
291 smart00053 DYNc Dynamin, GTPas 98.6 2.8E-07 6.2E-12 98.0 11.3 134 8-141 25-207 (240)
292 TIGR00991 3a0901s02IAP34 GTP-b 98.5 1.2E-06 2.5E-11 96.0 14.5 116 8-140 37-167 (313)
293 KOG0052 Translation elongation 98.5 3.5E-08 7.6E-13 108.9 1.7 128 9-141 7-157 (391)
294 COG5192 BMS1 GTP-binding prote 98.5 7.5E-07 1.6E-11 100.6 11.3 122 10-157 70-192 (1077)
295 KOG4252 GTP-binding protein [S 98.5 8.7E-08 1.9E-12 94.3 3.3 125 1-141 12-139 (246)
296 KOG0071 GTP-binding ADP-ribosy 98.5 6.8E-07 1.5E-11 85.0 9.0 121 10-154 18-143 (180)
297 KOG0074 GTP-binding ADP-ribosy 98.4 6E-07 1.3E-11 85.5 8.3 114 7-141 15-134 (185)
298 PRK13768 GTPase; Provisional 98.4 5.6E-07 1.2E-11 97.0 8.9 68 74-141 97-177 (253)
299 PF00350 Dynamin_N: Dynamin fa 98.4 4.7E-07 1E-11 90.5 7.5 64 73-136 100-168 (168)
300 KOG0097 GTPase Rab14, small G 98.4 1.4E-06 3E-11 82.6 8.5 121 4-140 6-130 (215)
301 KOG1143 Predicted translation 98.4 5.9E-07 1.3E-11 97.5 6.6 126 10-140 168-317 (591)
302 TIGR02836 spore_IV_A stage IV 98.3 3E-06 6.6E-11 94.8 10.3 128 10-139 18-193 (492)
303 PF04548 AIG1: AIG1 family; I 98.3 1.5E-05 3.2E-10 83.7 14.6 115 10-141 1-131 (212)
304 PTZ00099 rab6; Provisional 98.3 2.9E-06 6.4E-11 86.3 8.7 74 67-140 22-99 (176)
305 COG0536 Obg Predicted GTPase [ 98.3 6.8E-06 1.5E-10 89.5 11.8 115 9-141 159-290 (369)
306 PF03029 ATP_bind_1: Conserved 98.2 2.3E-06 5E-11 91.3 7.4 67 75-141 92-171 (238)
307 KOG0076 GTP-binding ADP-ribosy 98.2 2.1E-06 4.5E-11 84.8 6.4 120 9-141 17-141 (197)
308 PTZ00258 GTP-binding protein; 98.2 5.1E-06 1.1E-10 94.1 9.2 83 8-108 20-126 (390)
309 cd01900 YchF YchF subfamily. 98.2 4.1E-06 8.8E-11 91.0 8.1 80 12-109 1-104 (274)
310 PF00735 Septin: Septin; Inte 98.2 1.4E-05 3E-10 87.4 12.0 123 10-141 5-157 (281)
311 cd01434 EFG_mtEFG1_IV EFG_mtEF 98.1 6.6E-06 1.4E-10 77.9 8.1 40 802-841 53-92 (116)
312 PRK09435 membrane ATPase/prote 98.1 1.1E-05 2.5E-10 89.7 11.1 60 73-141 148-209 (332)
313 COG1163 DRG Predicted GTPase [ 98.1 6.2E-06 1.3E-10 89.1 7.7 112 9-139 63-186 (365)
314 KOG3883 Ras family small GTPas 98.1 1.3E-05 2.8E-10 77.5 8.7 116 8-139 8-131 (198)
315 KOG0077 Vesicle coat complex C 98.1 5.7E-06 1.2E-10 81.2 6.3 114 8-142 19-137 (193)
316 TIGR00073 hypB hydrogenase acc 98.1 1.1E-05 2.3E-10 84.3 8.8 126 7-140 20-162 (207)
317 PRK09601 GTP-binding protein Y 98.1 1.1E-05 2.5E-10 90.4 9.3 82 10-109 3-108 (364)
318 PRK14722 flhF flagellar biosyn 98.0 1.3E-05 2.8E-10 90.5 8.5 126 9-140 137-295 (374)
319 cd01342 Translation_Factor_II_ 98.0 3.6E-05 7.7E-10 66.3 9.4 65 439-518 16-81 (83)
320 PF05049 IIGP: Interferon-indu 98.0 1.2E-05 2.6E-10 90.3 7.9 113 10-139 36-154 (376)
321 COG5019 CDC3 Septin family pro 98.0 4.7E-05 1E-09 84.0 11.8 142 9-162 23-195 (373)
322 cd01899 Ygr210 Ygr210 subfamil 98.0 2E-05 4.4E-10 87.5 9.0 88 12-109 1-111 (318)
323 COG4917 EutP Ethanolamine util 98.0 1E-05 2.2E-10 76.0 5.4 100 9-140 1-104 (148)
324 KOG0091 GTPase Rab39, small G 98.0 3.7E-05 7.9E-10 75.2 9.4 114 10-140 9-130 (213)
325 PRK09602 translation-associate 97.9 2.8E-05 6E-10 89.0 9.7 95 10-109 2-114 (396)
326 KOG0463 GTP-binding protein GP 97.9 6.9E-06 1.5E-10 89.3 4.1 128 10-142 134-289 (641)
327 KOG0096 GTPase Ran/TC4/GSP1 (n 97.9 2E-05 4.4E-10 78.9 6.9 117 8-140 9-128 (216)
328 TIGR00750 lao LAO/AO transport 97.9 3.8E-05 8.3E-10 84.9 9.8 62 73-141 126-187 (300)
329 TIGR00993 3a0901s04IAP86 chlor 97.9 0.00011 2.4E-09 86.9 13.7 115 9-140 118-250 (763)
330 cd03110 Fer4_NifH_child This p 97.9 6.5E-05 1.4E-09 76.3 10.6 66 72-139 91-156 (179)
331 KOG0083 GTPase Rab26/Rab37, sm 97.9 3.1E-06 6.8E-11 79.7 0.3 112 14-140 2-117 (192)
332 cd03115 SRP The signal recogni 97.8 6.9E-05 1.5E-09 75.7 9.6 66 73-140 82-153 (173)
333 KOG0081 GTPase Rab27, small G 97.8 4.9E-06 1.1E-10 80.7 1.0 115 10-140 10-138 (219)
334 KOG2486 Predicted GTPase [Gene 97.8 6.2E-05 1.3E-09 80.0 9.2 116 7-140 134-262 (320)
335 TIGR00064 ftsY signal recognit 97.7 0.0002 4.3E-09 78.0 11.8 125 7-139 70-230 (272)
336 cd01693 mtEFG2_like_IV mtEF-G2 97.7 0.00017 3.6E-09 68.7 9.7 40 802-841 58-97 (120)
337 KOG1707 Predicted Ras related/ 97.7 0.00015 3.2E-09 83.9 10.8 117 8-142 8-131 (625)
338 TIGR01425 SRP54_euk signal rec 97.7 0.0002 4.4E-09 82.2 11.9 122 9-139 100-252 (429)
339 cd03114 ArgK-like The function 97.7 0.00014 3.1E-09 72.0 9.2 58 73-137 91-148 (148)
340 COG0523 Putative GTPases (G3E 97.7 0.00027 5.9E-09 78.6 12.2 145 9-163 1-175 (323)
341 PRK10416 signal recognition pa 97.7 0.00022 4.7E-09 79.4 11.4 121 8-139 113-272 (318)
342 KOG0467 Translation elongation 97.7 1.1E-07 2.4E-12 111.1 -15.1 197 5-229 176-378 (887)
343 PF03308 ArgK: ArgK protein; 97.7 0.00023 5E-09 75.7 10.4 127 7-142 27-183 (266)
344 KOG2655 Septin family protein 97.7 0.00023 5.1E-09 79.1 10.8 140 10-162 22-191 (366)
345 KOG1547 Septin CDC10 and relat 97.7 0.00068 1.5E-08 70.5 13.2 124 9-142 46-200 (336)
346 KOG1954 Endocytosis/signaling 97.6 0.00053 1.1E-08 75.2 12.3 133 8-141 57-226 (532)
347 KOG1490 GTP-binding protein CR 97.6 0.00013 2.9E-09 82.7 7.9 117 7-142 166-297 (620)
348 cd03112 CobW_like The function 97.6 0.00025 5.4E-09 71.0 9.1 123 11-138 2-158 (158)
349 cd01684 Tet_like_IV EF-G_domai 97.6 0.0003 6.4E-09 66.6 9.0 38 803-841 54-91 (115)
350 KOG0072 GTP-binding ADP-ribosy 97.6 5.4E-05 1.2E-09 72.7 3.7 113 8-141 17-134 (182)
351 cd02038 FleN-like FleN is a me 97.6 0.0008 1.7E-08 65.7 11.8 120 12-159 2-125 (139)
352 KOG0393 Ras-related small GTPa 97.6 4E-05 8.8E-10 78.6 2.6 114 9-139 4-122 (198)
353 cd01858 NGP_1 NGP-1. Autoanti 97.5 0.00011 2.5E-09 73.0 5.5 56 9-84 102-157 (157)
354 PRK11537 putative GTP-binding 97.5 0.00065 1.4E-08 75.7 11.9 143 8-163 3-178 (318)
355 cd03111 CpaE_like This protein 97.5 0.00071 1.5E-08 63.0 9.6 100 12-135 2-106 (106)
356 PF03193 DUF258: Protein of un 97.5 7.3E-05 1.6E-09 74.7 3.0 64 10-88 36-101 (161)
357 PF00448 SRP54: SRP54-type pro 97.4 0.00075 1.6E-08 70.0 9.8 123 10-140 2-154 (196)
358 cd01851 GBP Guanylate-binding 97.4 0.00053 1.1E-08 72.6 8.6 91 6-108 4-102 (224)
359 TIGR02475 CobW cobalamin biosy 97.4 0.00084 1.8E-08 75.6 10.6 134 7-141 2-188 (341)
360 PRK12727 flagellar biosynthesi 97.4 0.00093 2E-08 78.1 10.8 125 8-139 349-497 (559)
361 cd01849 YlqF_related_GTPase Yl 97.3 0.00026 5.6E-09 70.3 5.4 57 8-84 99-155 (155)
362 cd02036 MinD Bacterial cell di 97.3 0.0011 2.4E-08 66.8 10.0 64 75-140 64-128 (179)
363 TIGR00101 ureG urease accessor 97.3 0.00054 1.2E-08 71.2 7.7 59 73-140 91-151 (199)
364 cd04178 Nucleostemin_like Nucl 97.3 0.00029 6.3E-09 71.5 5.5 56 9-84 117-172 (172)
365 KOG2743 Cobalamin synthesis pr 97.3 0.00092 2E-08 71.7 9.2 154 5-165 53-243 (391)
366 COG1703 ArgK Putative periplas 97.3 0.0027 5.9E-08 68.7 12.6 128 8-142 50-205 (323)
367 PRK14974 cell division protein 97.3 0.0016 3.4E-08 73.0 11.3 120 8-139 139-292 (336)
368 PRK00771 signal recognition pa 97.3 0.0011 2.5E-08 76.6 10.3 120 8-139 94-245 (437)
369 cd03698 eRF3_II_like eRF3_II_l 97.3 0.0022 4.7E-08 57.0 9.8 64 439-519 16-82 (83)
370 cd01857 HSR1_MMR1 HSR1/MMR1. 97.2 0.00032 7E-09 68.5 4.8 22 11-32 85-106 (141)
371 cd01855 YqeH YqeH. YqeH is an 97.2 0.00032 6.9E-09 72.0 4.9 63 10-84 128-190 (190)
372 PRK10463 hydrogenase nickel in 97.2 0.00061 1.3E-08 74.4 6.8 125 7-140 102-244 (290)
373 KOG1673 Ras GTPases [General f 97.2 0.00041 8.8E-09 67.5 4.7 115 10-140 21-138 (205)
374 TIGR03597 GTPase_YqeH ribosome 97.2 0.00044 9.6E-09 78.4 5.7 115 10-140 155-280 (360)
375 PRK11889 flhF flagellar biosyn 97.2 0.0018 3.9E-08 73.3 10.1 124 8-140 240-391 (436)
376 cd02042 ParA ParA and ParB of 97.2 0.002 4.4E-08 59.2 8.9 82 12-120 2-84 (104)
377 PF02492 cobW: CobW/HypB/UreG, 97.1 0.0012 2.6E-08 67.3 7.2 142 11-163 2-172 (178)
378 PRK13849 putative crown gall t 97.1 0.003 6.4E-08 67.3 10.2 64 72-137 82-151 (231)
379 PRK12288 GTPase RsgA; Reviewed 97.1 0.00065 1.4E-08 76.5 5.4 22 11-32 207-228 (347)
380 KOG0410 Predicted GTP binding 97.1 0.0016 3.4E-08 70.8 7.9 116 8-140 177-308 (410)
381 TIGR00092 GTP-binding protein 97.0 0.002 4.2E-08 72.7 8.9 92 10-109 3-109 (368)
382 cd01857 HSR1_MMR1 HSR1/MMR1. 97.0 0.0011 2.4E-08 64.8 5.7 51 89-139 3-55 (141)
383 TIGR03596 GTPase_YlqF ribosome 97.0 0.00098 2.1E-08 72.8 5.8 56 9-84 118-173 (276)
384 cd01856 YlqF YlqF. Proteins o 97.0 0.0011 2.3E-08 67.0 5.7 57 8-84 114-170 (171)
385 TIGR00959 ffh signal recogniti 97.0 0.0036 7.8E-08 72.4 10.4 62 73-139 182-252 (428)
386 PRK10867 signal recognition pa 96.9 0.0048 1E-07 71.4 11.2 119 9-139 100-253 (433)
387 KOG0448 Mitofusin 1 GTPase, in 96.9 0.0042 9.2E-08 73.3 10.5 130 8-142 108-277 (749)
388 cd02037 MRP-like MRP (Multiple 96.9 0.0017 3.6E-08 65.4 6.4 66 72-139 66-134 (169)
389 PRK05703 flhF flagellar biosyn 96.9 0.0029 6.3E-08 73.3 9.1 125 9-139 221-370 (424)
390 TIGR00157 ribosome small subun 96.9 0.0012 2.6E-08 71.0 5.4 62 10-87 121-184 (245)
391 PRK12289 GTPase RsgA; Reviewed 96.9 0.0012 2.6E-08 74.4 5.5 22 11-32 174-195 (352)
392 COG1162 Predicted GTPases [Gen 96.9 0.00084 1.8E-08 73.1 4.0 63 10-87 165-229 (301)
393 COG0012 Predicted GTPase, prob 96.9 0.0031 6.8E-08 70.3 8.4 93 10-109 3-109 (372)
394 KOG3886 GTP-binding protein [S 96.8 0.0021 4.6E-08 66.7 6.3 118 8-142 3-132 (295)
395 TIGR01969 minD_arch cell divis 96.8 0.0049 1.1E-07 65.7 9.5 65 73-139 108-173 (251)
396 cd00066 G-alpha G protein alph 96.8 0.0022 4.7E-08 71.6 6.9 82 59-140 146-242 (317)
397 cd01854 YjeQ_engC YjeQ/EngC. 96.8 0.0013 2.8E-08 72.4 5.0 66 10-88 162-227 (287)
398 PRK09563 rbgA GTPase YlqF; Rev 96.8 0.0017 3.6E-08 71.5 5.8 58 9-86 121-178 (287)
399 COG3640 CooC CO dehydrogenase 96.8 0.0027 5.9E-08 66.5 6.8 63 74-139 134-198 (255)
400 PRK12726 flagellar biosynthesi 96.8 0.0036 7.8E-08 70.6 8.0 26 7-32 204-229 (407)
401 PRK12724 flagellar biosynthesi 96.7 0.0054 1.2E-07 70.2 9.4 121 10-139 224-372 (432)
402 cd01858 NGP_1 NGP-1. Autoanti 96.7 0.0019 4E-08 64.3 4.9 51 90-140 1-53 (157)
403 COG1419 FlhF Flagellar GTP-bin 96.7 0.0033 7.2E-08 71.0 7.2 129 8-140 202-352 (407)
404 KOG1486 GTP-binding protein DR 96.7 0.0027 5.9E-08 66.6 6.0 83 10-110 63-152 (364)
405 COG0378 HypB Ni2+-binding GTPa 96.7 0.0031 6.6E-08 64.4 6.2 24 9-32 13-36 (202)
406 cd01859 MJ1464 MJ1464. This f 96.7 0.0025 5.5E-08 63.1 5.5 25 8-32 100-124 (156)
407 PRK12723 flagellar biosynthesi 96.7 0.0071 1.5E-07 69.1 9.7 128 9-140 174-326 (388)
408 KOG0447 Dynamin-like GTP bindi 96.7 0.014 3E-07 67.0 11.6 138 7-149 306-501 (980)
409 PRK14721 flhF flagellar biosyn 96.6 0.0034 7.3E-08 72.2 7.0 126 9-140 191-340 (420)
410 smart00275 G_alpha G protein a 96.6 0.0043 9.4E-08 69.9 7.7 83 58-140 168-265 (342)
411 PRK06995 flhF flagellar biosyn 96.6 0.0058 1.3E-07 71.4 8.7 123 9-139 256-404 (484)
412 COG1161 Predicted GTPases [Gen 96.6 0.0034 7.5E-08 70.1 6.3 57 10-86 133-189 (322)
413 TIGR01968 minD_bact septum sit 96.6 0.011 2.3E-07 63.5 9.7 64 73-138 111-175 (261)
414 cd03693 EF1_alpha_II EF1_alpha 96.5 0.019 4.2E-07 51.9 9.4 83 395-520 2-87 (91)
415 PRK13796 GTPase YqeH; Provisio 96.5 0.0028 6E-08 72.1 4.8 60 10-85 161-221 (365)
416 PHA02518 ParA-like protein; Pr 96.5 0.015 3.2E-07 60.3 9.8 64 73-138 76-145 (211)
417 cd01859 MJ1464 MJ1464. This f 96.4 0.0053 1.1E-07 60.8 5.6 51 89-139 4-54 (156)
418 KOG2485 Conserved ATP/GTP bind 96.3 0.0061 1.3E-07 66.2 5.9 77 10-98 144-221 (335)
419 PRK14723 flhF flagellar biosyn 96.3 0.0062 1.3E-07 74.5 6.6 125 9-140 185-337 (767)
420 PRK06731 flhF flagellar biosyn 96.3 0.014 3.1E-07 63.4 8.8 124 9-140 75-225 (270)
421 PRK00098 GTPase RsgA; Reviewed 96.3 0.0041 9E-08 68.7 4.7 23 10-32 165-187 (298)
422 cd01983 Fer4_NifH The Fer4_Nif 96.1 0.029 6.2E-07 49.7 8.7 76 12-118 2-79 (99)
423 KOG1424 Predicted GTP-binding 96.1 0.0052 1.1E-07 70.6 4.1 74 9-102 314-387 (562)
424 PRK08099 bifunctional DNA-bind 96.1 0.02 4.2E-07 65.9 8.8 31 6-38 216-246 (399)
425 KOG1533 Predicted GTPase [Gene 96.0 0.0098 2.1E-07 62.1 5.6 69 73-141 96-178 (290)
426 PF01656 CbiA: CobQ/CobB/MinD/ 96.0 0.0038 8.2E-08 63.6 2.7 64 74-139 95-161 (195)
427 PRK13695 putative NTPase; Prov 96.0 0.023 5E-07 57.5 8.1 35 102-136 99-136 (174)
428 cd04089 eRF3_II eRF3_II: domai 95.9 0.052 1.1E-06 48.1 9.1 51 439-506 15-65 (82)
429 KOG1534 Putative transcription 95.9 0.0058 1.3E-07 62.8 3.3 67 74-140 98-178 (273)
430 KOG1491 Predicted GTP-binding 95.9 0.021 4.6E-07 62.7 7.6 82 10-109 21-126 (391)
431 KOG3887 Predicted small GTPase 95.9 0.012 2.7E-07 61.4 5.5 129 10-155 28-165 (347)
432 TIGR03371 cellulose_yhjQ cellu 95.9 0.071 1.5E-06 56.7 11.7 64 74-139 115-181 (246)
433 cd02117 NifH_like This family 95.8 0.024 5.2E-07 59.3 7.7 68 71-139 114-188 (212)
434 cd01856 YlqF YlqF. Proteins o 95.8 0.01 2.2E-07 59.9 4.6 57 81-139 2-59 (171)
435 cd02032 Bchl_like This family 95.7 0.047 1E-06 59.2 9.6 65 73-138 115-184 (267)
436 PRK10818 cell division inhibit 95.7 0.054 1.2E-06 58.7 10.0 65 73-139 113-186 (270)
437 TIGR03815 CpaE_hom_Actino heli 95.6 0.11 2.3E-06 58.1 12.0 63 73-137 204-266 (322)
438 PRK10751 molybdopterin-guanine 95.6 0.044 9.6E-07 55.7 8.1 26 7-32 4-29 (173)
439 TIGR03596 GTPase_YlqF ribosome 95.5 0.014 3.1E-07 63.8 4.7 57 81-139 4-61 (276)
440 TIGR00157 ribosome small subun 95.5 0.037 8E-07 59.5 7.7 48 93-140 32-81 (245)
441 PRK13185 chlL protochlorophyll 95.5 0.04 8.8E-07 59.7 7.9 64 73-137 117-185 (270)
442 TIGR03348 VI_IcmF type VI secr 95.4 0.02 4.4E-07 74.5 6.3 116 9-139 111-256 (1169)
443 cd02040 NifH NifH gene encodes 95.4 0.04 8.6E-07 59.6 7.5 37 73-109 116-153 (270)
444 PRK13232 nifH nitrogenase redu 95.2 0.059 1.3E-06 58.7 8.2 67 71-137 114-185 (273)
445 PF07015 VirC1: VirC1 protein; 95.2 0.12 2.5E-06 54.8 9.8 64 73-138 83-152 (231)
446 smart00010 small_GTPase Small 95.1 0.043 9.4E-07 51.2 6.1 22 11-32 2-23 (124)
447 cd01855 YqeH YqeH. YqeH is an 95.1 0.018 3.9E-07 59.1 3.7 57 82-140 19-75 (190)
448 PRK13230 nitrogenase reductase 95.1 0.039 8.4E-07 60.3 6.4 37 73-109 116-153 (279)
449 cd04178 Nucleostemin_like Nucl 95.1 0.023 4.9E-07 57.8 4.2 42 99-140 1-44 (172)
450 CHL00072 chlL photochlorophyll 95.1 0.076 1.7E-06 58.5 8.6 64 73-137 115-183 (290)
451 PRK09563 rbgA GTPase YlqF; Rev 95.0 0.022 4.7E-07 62.7 4.1 57 81-139 7-64 (287)
452 PRK10037 cell division protein 94.9 0.15 3.2E-06 54.8 10.3 58 72-137 116-174 (250)
453 COG0541 Ffh Signal recognition 94.9 0.097 2.1E-06 59.7 9.0 64 73-139 182-252 (451)
454 PF06564 YhjQ: YhjQ protein; 94.9 0.099 2.1E-06 55.9 8.7 61 73-140 117-177 (243)
455 cd01849 YlqF_related_GTPase Yl 94.7 0.033 7.2E-07 55.2 4.2 42 99-140 1-43 (155)
456 PRK14493 putative bifunctional 94.6 0.065 1.4E-06 58.5 6.6 24 9-32 1-24 (274)
457 cd03697 EFTU_II EFTU_II: Elong 94.6 0.22 4.7E-06 44.6 8.7 53 439-506 16-68 (87)
458 TIGR01281 DPOR_bchL light-inde 94.5 0.14 3.1E-06 55.4 9.0 66 73-139 115-185 (268)
459 TIGR03018 pepcterm_TyrKin exop 94.4 0.32 6.8E-06 50.7 11.0 57 75-134 150-207 (207)
460 TIGR01007 eps_fam capsular exo 94.3 0.091 2E-06 54.5 6.6 67 73-140 127-194 (204)
461 TIGR03597 GTPase_YqeH ribosome 94.3 0.1 2.2E-06 59.3 7.4 54 85-140 51-104 (360)
462 KOG4423 GTP-binding protein-li 94.3 0.0045 9.8E-08 62.3 -3.0 116 7-140 23-149 (229)
463 PRK01889 GTPase RsgA; Reviewed 94.2 0.058 1.2E-06 61.3 5.3 65 10-87 196-260 (356)
464 cd03696 selB_II selB_II: this 94.1 0.32 6.9E-06 43.0 8.8 51 439-506 16-66 (83)
465 COG1618 Predicted nucleotide k 94.0 0.61 1.3E-05 46.7 11.1 120 9-138 5-142 (179)
466 cd03695 CysN_NodQ_II CysN_NodQ 93.8 0.2 4.2E-06 44.4 6.8 51 439-506 16-66 (81)
467 cd03688 eIF2_gamma_II eIF2_gam 93.8 0.52 1.1E-05 44.2 9.6 104 394-520 2-106 (113)
468 PRK13231 nitrogenase reductase 93.7 0.18 3.9E-06 54.5 7.6 65 73-137 113-179 (264)
469 COG1192 Soj ATPases involved i 93.6 0.23 5E-06 53.4 8.3 66 73-140 119-191 (259)
470 COG1763 MobB Molybdopterin-gua 93.6 0.1 2.3E-06 52.3 5.1 24 9-32 2-25 (161)
471 TIGR01287 nifH nitrogenase iro 93.4 0.15 3.3E-06 55.4 6.6 63 73-135 115-183 (275)
472 TIGR03499 FlhF flagellar biosy 93.4 0.069 1.5E-06 58.7 3.8 25 8-32 193-217 (282)
473 KOG0780 Signal recognition par 93.4 0.23 5E-06 55.6 7.7 125 10-139 102-253 (483)
474 KOG2423 Nucleolar GTPase [Gene 93.3 0.051 1.1E-06 60.6 2.6 25 8-32 306-330 (572)
475 COG0552 FtsY Signal recognitio 93.3 0.27 5.9E-06 54.4 8.2 122 8-139 138-297 (340)
476 cd03692 mtIF2_IVc mtIF2_IVc: t 93.3 0.27 5.9E-06 43.8 6.8 54 439-506 16-69 (84)
477 cd03116 MobB Molybdenum is an 93.2 0.32 7E-06 48.8 8.0 24 9-32 1-24 (159)
478 PRK12288 GTPase RsgA; Reviewed 93.2 0.47 1E-05 53.7 10.2 46 95-140 118-164 (347)
479 PF13207 AAA_17: AAA domain; P 93.1 0.095 2.1E-06 49.2 3.8 22 11-32 1-22 (121)
480 KOG2484 GTPase [General functi 93.1 0.076 1.6E-06 59.6 3.4 53 11-85 254-308 (435)
481 KOG1707 Predicted Ras related/ 93.1 0.36 7.7E-06 56.8 8.9 116 8-142 424-542 (625)
482 KOG1487 GTP-binding protein DR 93.1 0.077 1.7E-06 56.3 3.3 115 10-144 60-187 (358)
483 PRK08118 topology modulation p 93.0 0.091 2E-06 53.1 3.7 23 10-32 2-24 (167)
484 COG1121 ZnuC ABC-type Mn/Zn tr 93.0 0.33 7.1E-06 52.3 8.0 21 11-31 32-52 (254)
485 PRK05800 cobU adenosylcobinami 93.0 0.31 6.8E-06 49.4 7.5 140 10-168 2-154 (170)
486 PF06858 NOG1: Nucleolar GTP-b 92.9 0.19 4.1E-06 41.4 4.6 47 91-137 6-58 (58)
487 PF13555 AAA_29: P-loop contai 92.9 0.11 2.3E-06 43.7 3.3 22 11-32 25-46 (62)
488 PRK12289 GTPase RsgA; Reviewed 92.9 0.12 2.7E-06 58.4 4.9 48 93-140 85-134 (352)
489 PF09547 Spore_IV_A: Stage IV 92.7 0.35 7.6E-06 55.1 8.1 128 10-139 18-193 (492)
490 PF00503 G-alpha: G-protein al 92.7 0.12 2.6E-06 59.3 4.7 83 58-140 219-317 (389)
491 PF05621 TniB: Bacterial TniB 92.7 0.58 1.3E-05 51.5 9.6 28 5-32 57-84 (302)
492 cd03694 GTPBP_II Domain II of 92.6 0.41 8.9E-06 42.9 7.0 55 439-506 16-70 (87)
493 TIGR01005 eps_transp_fam exopo 92.6 0.25 5.5E-06 61.7 7.7 66 73-139 655-721 (754)
494 cd01120 RecA-like_NTPases RecA 92.4 0.68 1.5E-05 45.0 9.1 21 12-32 2-22 (165)
495 COG0455 flhG Antiactivator of 92.4 0.76 1.6E-05 49.9 10.0 63 74-138 113-178 (262)
496 KOG0082 G-protein alpha subuni 92.3 0.21 4.6E-06 56.1 5.7 83 58-140 179-276 (354)
497 PRK09841 cryptic autophosphory 92.3 0.45 9.8E-06 59.2 9.2 65 73-138 640-705 (726)
498 cd02034 CooC The accessory pro 92.0 0.23 5.1E-06 47.0 4.8 21 12-32 2-22 (116)
499 COG3523 IcmF Type VI protein s 91.9 0.15 3.3E-06 65.1 4.4 68 73-140 173-270 (1188)
500 COG0563 Adk Adenylate kinase a 91.8 0.15 3.2E-06 52.1 3.6 23 10-32 1-23 (178)
No 1
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.4e-152 Score=1232.88 Aligned_cols=668 Identities=37% Similarity=0.663 Sum_probs=609.0
Q ss_pred CCCCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEc------------
Q 047363 5 DTRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYK------------ 72 (876)
Q Consensus 5 ~~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~------------ 72 (876)
+..+|||+.+++|++||||||+++|+.. +|+|+...+|..||+|++.+||+|||||+++.+++.+.
T Consensus 15 k~~NiRNmSVIAHVDHGKSTLTDsLV~k--AgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~ 92 (842)
T KOG0469|consen 15 KKKNIRNMSVIAHVDHGKSTLTDSLVQK--AGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQE 92 (842)
T ss_pred cccccccceEEEEecCCcchhhHHHHHh--hceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCC
Confidence 3578999999999999999999999999 99999888999999999999999999999999999875
Q ss_pred ----CeEEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccccccccChH
Q 047363 73 ----DYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLISELKLTPL 148 (876)
Q Consensus 73 ----~~~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~~e~~~~~~ 148 (876)
++.||+||+|||+||++|+.+|+|+.|||++|||+++|+|.||+++++|+..+++.+++|+||+||...|++++.+
T Consensus 93 ~d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ERIkPvlv~NK~DRAlLELq~~~E 172 (842)
T KOG0469|consen 93 GDGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLVMNKMDRALLELQLSQE 172 (842)
T ss_pred CCCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHhhccceEEeehhhHHHHhhcCCHH
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhccccccccccccccccCcccccccccccccccccccccCCCCcEEEEeccCCCccchHHHH
Q 047363 149 EAYNRLLRIVHEVNGIMSAYKSEKYLSDVDSLLSVPSEKLGDENLQFIEDDEEDTFQPQKGNVAFVCGLDGWGFSISEFA 228 (876)
Q Consensus 149 ~~~~~l~~~l~~vn~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~~gnV~f~Sa~~Gw~ftl~~fa 228 (876)
++|+.|+++++.+|.+++.+..+. ..+....|++|+|.|+|+++||+||+.+||
T Consensus 173 eLyqtf~R~VE~vNviisTy~d~~--------------------------~g~~~v~P~kg~v~F~SGLhGWaFTlrQFa 226 (842)
T KOG0469|consen 173 ELYQTFQRIVENVNVIISTYGDGP--------------------------MGDVQVDPEKGTVGFGSGLHGWAFTLRQFA 226 (842)
T ss_pred HHHHHHHHHHhcccEEEEecccCC--------------------------cCceEecCCCCceeeccccchhhhhHHHHH
Confidence 999999999999999988764321 123457899999999999999999999999
Q ss_pred HHHHHhcCCCHHHHHHhhcccceecCCCcccccccCC-CCCCCCCCchhhhhchhHHHHHHHHcCCCCcHHHHHHHHHHc
Q 047363 229 EFYATKLGASTAALEKALWGPRYFNPKTKMIVGKKGI-STGTKARPMFVQFVLEPLWQVYQAALEPDGDKGVLEKVIKSF 307 (876)
Q Consensus 229 ~~y~~k~~~~~~~l~k~LWGd~y~~~ktkk~~~~~~~-~~~~~~~p~Fv~fiL~pi~~l~~~v~~~d~~~~~l~k~l~~~ 307 (876)
++|++|||++..+|.+.||||.|||++|+||.+.... .+++. ++.||+|||+|||++++++++...+ .+..+++++
T Consensus 227 ~~Y~~KF~~~~~kmm~~LWg~~~f~~ktkk~~~s~t~~~gn~~-~r~F~~~iLdPIykvfdaimN~kke--ei~~llekl 303 (842)
T KOG0469|consen 227 EMYAKKFGIDVRKMMNRLWGDNFFNPKTKKWSKSATDAEGNPL-RRAFCMFILDPIYKVFDAIMNFKKE--EIATLLEKL 303 (842)
T ss_pred HHHHHHhCCcHHHHHHHhhcccccCccCCcccccccccccCcc-ccceeEEeechHHHHHHHHhhccHH--HHHHHHHHh
Confidence 9999999999999999999999999999999765443 34444 8999999999999999999887655 889999999
Q ss_pred CCCCCHHHHhccChHHHHHHhhhcccccHHHHHHHHhhcCCCcccccchhhhcccccccccCCcccccccchhhhhhhhh
Q 047363 308 NLSIPRRELQNKDPKAVLQAVLSHWLPLSDAILSMVVKCIPDPISAQSYRISRLLPKREILDNDVDCNVLTEADFVRKSV 387 (876)
Q Consensus 308 g~~l~~~~l~~~~~k~ll~~v~~~~lp~~~~lLd~i~~~lPsP~~a~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (876)
++.+...+.. ...|+|++.+|++|||.+++||.||+-|||||..+|++|.+.+|.|+ ..|+.+-++
T Consensus 304 ~v~lk~~~kd-~eGK~LlK~vMr~wLPAadallemIalhLPSPvtaQkyR~e~LYEGP-------------~DDe~a~ai 369 (842)
T KOG0469|consen 304 EVTLKGDEKD-LEGKALLKVVMRKWLPAADALLEMIALHLPSPVTAQKYRAEYLYEGP-------------ADDEAAVAI 369 (842)
T ss_pred cceecccccc-ccchHHHHHHHHHhcchHHHHHHHHHhhCCCchHHHHHHHHHhhcCC-------------CchHHhhHh
Confidence 9999887654 58999999999999999999999999999999999999999999431 235788899
Q ss_pred cccCCCCCCCeEEEEEEeeeecccccCCCCCCccccccccCCCCCCCCccceEEEEEEEeCccCCCCEEEEeccccCCcc
Q 047363 388 EVCNSSPEAPCVAFVSKMFAVPIKMLPQRGSNGEILDNYADKGGNGESEECFLAFARIFSGVLYSGQRVFVLSALYDPLK 467 (876)
Q Consensus 388 ~~cd~~~~~plv~~V~K~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iaf~RV~SGtL~~G~~v~vlg~~y~~~~ 467 (876)
.+|| |++|+++||+||++. +++.+|+||+|||||++.+|+++++.||+|.|.+
T Consensus 370 k~CD--~~aplmmYvSKMvPt-------------------------sDkgRFyAFGRVFsG~v~~G~KvRiqgPnY~PGk 422 (842)
T KOG0469|consen 370 KNCD--PKAPLMMYVSKMVPT-------------------------SDKGRFYAFGRVFSGKVFTGLKVRIQGPNYVPGK 422 (842)
T ss_pred hccC--CCCCeEEeeeecccc-------------------------CCCceEEEEeeeecceeccCcEEEEeCCCCCCCc
Confidence 9999 999999999999843 3456799999999999999999999999999998
Q ss_pred hhhhccccceeEEeEEEEecCCceeecceeeCCCeEEEecCCceeeccceecCCCCcccCCCccccCCceeEEEEeeCCC
Q 047363 468 VESMQKHIQEAELQSLYLMMGQGLKPVASAKAGNVVAIRGLGQQILKSATLSSTRNCWPFSSMVFQVSPTLRVAIEPSDP 547 (876)
Q Consensus 468 ~~~~~~~~~~~~I~~L~l~~G~~~~~v~~v~AGnIv~I~GL~~~i~k~~Tl~s~~~~~~~~~~~~~~~Pvv~vaIEP~~~ 547 (876)
.++. ....|++..+||||..++|+.+|||||+++.|++++++|++||++....++++.|+|+.+||++||||++||
T Consensus 423 kedl----~~K~iqRtvlMMGr~vepied~PaGNIiGlvGvDqfLvKtGTiTt~e~AHNmrvMKFSVSPVV~VAVe~Knp 498 (842)
T KOG0469|consen 423 KEDL----YIKAIQRTVLMMGRFVEPIEDCPAGNIIGLVGVDQFLVKTGTITTSEAAHNMRVMKFSVSPVVRVAVEAKNP 498 (842)
T ss_pred HHHH----HHHHHHHHHHHhcccccccccCCCCcEEEEeehhHhhhccCceeehhhhccceEEEeeccceEEEEEecCCh
Confidence 8874 345678889999999999999999999999999999999999999888999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHhcCCceEEEEccCCcEEEEecchhHHHHHHHHHHhhhccceEEEeCCeeeEEecCCCCCCCCcccc
Q 047363 548 ADMGALMKGLRLLNRADPFVEVSVSSRGENVLAAAGEVHLERCIKDLKERFAKVSLEVSPPLVSYKETIEGDTSNPLQNV 627 (876)
Q Consensus 548 ~d~~kL~~gL~~L~~~DP~l~v~~~etGE~vl~g~GElHLe~~l~dL~~~fa~vei~vs~P~V~yrETI~~~~~~~~~~~ 627 (876)
.|+|||++||++|+++||++.+..+|+|||+|.|+||||||+||+||++.||+|.++.|+|+|+|||||...
T Consensus 499 ~DLpKLvEGLkrLakSDP~v~~~~~esGehiiAgaGeLHLEICLkDLeedhA~iPlk~sdPvVsYrEtvs~~-------- 570 (842)
T KOG0469|consen 499 ADLPKLVEGLKRLAKSDPMVQCIIEESGEHIIAGAGELHLEICLKDLEEDHACIPLKKSDPVVSYRETVSEE-------- 570 (842)
T ss_pred hhhHHHHHHHHHHhccCCeEEEEeccCCceEEeccchhhHHHHHhhHhhcccCCceecCCCeeeeecccccc--------
Confidence 999999999999999999999999999999999999999999999999999999999999999999999774
Q ss_pred ccccCCcceEEeecCCCceEEEEEeecCChhHHHHHHhhhhhhhhhhccCCCcccccccCCCCCCCChHHHHHHHHHHHH
Q 047363 628 ILLSGSSDYFEKTTPNGRCVVRVQVMKLPFTVTKVLDECADLLGIIIGGQANKSLETQRSSSGEDDNPIEALRKRIMDAV 707 (876)
Q Consensus 628 ~~~~~~~~~~~~~t~n~~~~i~v~a~PLp~~v~~~le~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 707 (876)
++..+..++|||||||+|+|+|||+++.+.|++ |.. ...++++.
T Consensus 571 -----ss~~~lsKSpNKHNRi~mtaeP~~~~l~~~i~~----------g~v---------------~~rd~fK~------ 614 (842)
T KOG0469|consen 571 -----SSQTCLSKSPNKHNRIYMTAEPMDDGLSDDIEN----------GKV---------------NARDEFKA------ 614 (842)
T ss_pred -----cchhhhccCCcccceeEEecccCCchhhhhhhc----------Ccc---------------ChhHHHHH------
Confidence 344678899999999999999999999999886 330 11112221
Q ss_pred HhhhhcCCCchHHHHHHhhhHHHH-hhccEEEECCCCCCCeEEEcCCCCCCCCcccceecccccccccccccCCCCCCCC
Q 047363 708 EDHISAGNENDQYRMEKCKVKWQK-LLRRIWALGPRQIGPNILFKPDDKQIDTESSVLVRGSAHVSERLGFVDNSDDGDA 786 (876)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~w~~-~~~~IwafGP~~~g~NiL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (876)
+++.+.++|+ ||. .+++||||||+.+|||+|+ |.|++++|
T Consensus 615 ---------rAr~~aeky~--~dvt~aRKIWCfgPd~tg~Nll~-------D~TK~vqy--------------------- 655 (842)
T KOG0469|consen 615 ---------RARILAEKYG--WDVTEARKIWCFGPDGTGPNLLV-------DQTKGVQY--------------------- 655 (842)
T ss_pred ---------HHHHHHHHhC--CchhhhheeeEeCCCCCCCcEEE-------ecchhhHH---------------------
Confidence 1456667788 985 6999999999999999999 89999988
Q ss_pred ccCCCCCCCccchhhhhhhHHHHHHHHHHHhcCCCCCCCCcceeEEEEEEEeec-cccccc
Q 047363 787 AEEIPPGVNRASFVEAQSLESSIVSGFQLATASGPLCDEPMWGLAFIVEAYISS-NFLRIL 846 (876)
Q Consensus 787 ~~~~~~~~~~~~~~~~~~~~~siv~GFq~at~~GPLceEp~~gv~f~i~d~~~~-~~~~~~ 846 (876)
|+|+|+|+++|||||+++||||+|.||||+|.|.|+.+| ++||-=
T Consensus 656 ---------------lnEIKdsVvagFqwA~keG~l~~E~mRgvrfni~DvtLHADAIHRG 701 (842)
T KOG0469|consen 656 ---------------LNEIKDSVVAGFQWATKEGPLFGENMRGVRFNILDVTLHADAIHRG 701 (842)
T ss_pred ---------------HHHHHHHHHHHHHHHhccCCcccccccceeEEeeeeeeehhhhhcC
Confidence 899999999999999999999999999999999999998 899853
No 2
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.3e-132 Score=1103.15 Aligned_cols=671 Identities=31% Similarity=0.563 Sum_probs=598.4
Q ss_pred CCCCCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEc-----CeEEEE
Q 047363 4 SDTRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYK-----DYAINL 78 (876)
Q Consensus 4 ~~~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~-----~~~inl 78 (876)
.+++++|||+++||.+||||+|++.|..+||... ++......+|+|.+..|++||++|++.+.++... +|.+|+
T Consensus 123 ~~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~-~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~ni 201 (971)
T KOG0468|consen 123 DNPERIRNVGLVGHLHHGKTALMDLLVEQTHPDF-SKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNI 201 (971)
T ss_pred cCcceEEEEEEeeccccChhHHHHhhceeccccc-cccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeee
Confidence 3788999999999999999999999999988432 2222345699999999999999999999999875 689999
Q ss_pred EcCCCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccccccccChHHHHHHHHHHH
Q 047363 79 IDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLISELKLTPLEAYNRLLRIV 158 (876)
Q Consensus 79 IDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~~e~~~~~~~~~~~l~~~l 158 (876)
+|||||++|++|+.++++.+||||+|||+.+|++.+|+++++++.+.++|+++||||+||++.|++++|.++|.+|++++
T Consensus 202 lDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~~~~i~vviNKiDRLilELkLPP~DAY~KLrHii 281 (971)
T KOG0468|consen 202 LDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQNRLPIVVVINKVDRLILELKLPPMDAYYKLRHII 281 (971)
T ss_pred ecCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHhccCcEEEEEehhHHHHHHhcCChHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhccccccccccccccccCcccccccccccccccccccccCCCCcEEEEeccCCCccchHHHHHHHHHhc-CC
Q 047363 159 HEVNGIMSAYKSEKYLSDVDSLLSVPSEKLGDENLQFIEDDEEDTFQPQKGNVAFVCGLDGWGFSISEFAEFYATKL-GA 237 (876)
Q Consensus 159 ~~vn~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~~gnV~f~Sa~~Gw~ftl~~fa~~y~~k~-~~ 237 (876)
+++|..++++.. +....+||..|||+|+|+..||+||+.+||.+|++.. ++
T Consensus 282 ~~iN~~is~~s~----------------------------~~~~~~sP~~gNvcFaS~~~g~cFtl~sFak~Y~~~~~~~ 333 (971)
T KOG0468|consen 282 DEINNLISTFSK----------------------------DDNPVVSPILGNVCFASGKLGFCFTLKSFAKLYADAHGHI 333 (971)
T ss_pred HHhcchhhhccc----------------------------ccccccccccCceeeeccccceeeehHHHHHHHHHhcCCc
Confidence 999998887632 1356799999999999999999999999999999987 48
Q ss_pred CHHHHHHhhcccceecCCCcccccccCCCCCCCCCCchhhhhchhHHHHHHHHcCCCCcHHHHHHHHHHcCCCCCHHHHh
Q 047363 238 STAALEKALWGPRYFNPKTKMIVGKKGISTGTKARPMFVQFVLEPLWQVYQAALEPDGDKGVLEKVIKSFNLSIPRRELQ 317 (876)
Q Consensus 238 ~~~~l~k~LWGd~y~~~ktkk~~~~~~~~~~~~~~p~Fv~fiL~pi~~l~~~v~~~d~~~~~l~k~l~~~g~~l~~~~l~ 317 (876)
+...+.++||||.||++||+||.+++.... . +++||+|||+|+|||++.++...++ .++..+..+|+.|++++++
T Consensus 334 ~~d~Fa~RLWGdvYf~~ktrkF~kk~~~~~-~--~rsFVeFILePlYKi~sq~igd~~~--~l~~~l~e~~v~ls~e~~k 408 (971)
T KOG0468|consen 334 DVDDFAKRLWGDVYFHSKTRKFVKKPPDGS-G--SRSFVEFILEPLYKIFSQVIGDEKD--SLKGLLAELGVRLSKEAYK 408 (971)
T ss_pred chhhhhhhhhccccccccccccccCCCCCc-c--cchhhhhhHhHHHHHHHHHhcchhh--hhhhhhhhhcccccHHHhh
Confidence 899999999999999999999987654433 2 6799999999999999999887666 8999999999999999998
Q ss_pred ccChHHHHHHhhhcccccHHHHHHHHhhcCCCcccccchhhhcccccccccCCcccccccchhhhhhhhhcccCCCCCCC
Q 047363 318 NKDPKAVLQAVLSHWLPLSDAILSMVVKCIPDPISAQSYRISRLLPKREILDNDVDCNVLTEADFVRKSVEVCNSSPEAP 397 (876)
Q Consensus 318 ~~~~k~ll~~v~~~~lp~~~~lLd~i~~~lPsP~~a~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~cd~~~~~p 397 (876)
. ++|.+|+.+|..+|.....+.||+++|+|||.+..+.++...|+| ..+ ..+.++|..|+ +.+|
T Consensus 409 ~-n~rPll~lvc~~ffg~~sgfvd~~v~hi~sP~e~a~~K~~hsy~G------~~~-------~~i~~~m~~c~--~~~p 472 (971)
T KOG0468|consen 409 L-NPRPLLRLVCKSFFGIESGFVDMPVEHIPSPRENAARKAEHSYTG------TKD-------SLIYEGMVECN--ASGP 472 (971)
T ss_pred c-CccHHHHHHHHHhccchhhhhHhhHhhcCChhhhhccccceeecC------CCc-------chHHHHHHhhC--CCCc
Confidence 5 999999999999999999999999999999999999999887753 111 25788999999 8899
Q ss_pred eEEEEEEeeeecccccCCCCCCccccccccCCCCCCCCccceEEEEEEEeCccCCCCEEEEeccccCCcchhhhccccce
Q 047363 398 CVAFVSKMFAVPIKMLPQRGSNGEILDNYADKGGNGESEECFLAFARIFSGVLYSGQRVFVLSALYDPLKVESMQKHIQE 477 (876)
Q Consensus 398 lv~~V~K~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iaf~RV~SGtL~~G~~v~vlg~~y~~~~~~~~~~~~~~ 477 (876)
++.+++||+... +...|.+|+|||||+++.||.|+++|++|...+++++ ..
T Consensus 473 Lm~h~tklyp~d-------------------------D~~~f~~f~rv~Sg~~~~~q~V~vlgeny~leDEeD~----~~ 523 (971)
T KOG0468|consen 473 LMVHVTKLYPRD-------------------------DTVQFHVFGRVYSGQVVTGQDVRVLGENYSLEDEEDM----VI 523 (971)
T ss_pred eeEEeecceecC-------------------------CceeeeeeeeeeecceeecceeeEeeccccCCCcccc----ee
Confidence 999999999542 4456999999999999999999999999999888774 35
Q ss_pred eEEeEEEEecCCceeecceeeCCCeEEEecCCceeeccceecCC---CCcccCCCccccCCceeEEEEeeCCCccHHHHH
Q 047363 478 AELQSLYLMMGQGLKPVASAKAGNVVAIRGLGQQILKSATLSST---RNCWPFSSMVFQVSPTLRVAIEPSDPADMGALM 554 (876)
Q Consensus 478 ~~I~~L~l~~G~~~~~v~~v~AGnIv~I~GL~~~i~k~~Tl~s~---~~~~~~~~~~~~~~Pvv~vaIEP~~~~d~~kL~ 554 (876)
..|++|+++.+|+..+|++|+||+||.|.|+++.++|++|+++. .....|+|+.|.+.|++++|+||.||+++|||+
T Consensus 524 ~~v~el~v~~arY~i~V~~~~~G~~VLI~Gidq~i~KtaTi~~~~~ked~yiFrpl~~~t~~VvKiaveP~nPsELPKml 603 (971)
T KOG0468|consen 524 CEVGELWVVRARYRIPVSRAPAGLWVLIEGVDQSIVKTATIKSLEYKEDVYIFRPLKFNTEPVVKVAVEPLNPSELPKML 603 (971)
T ss_pred eeeeeeeeeeeeEEEEecccCCCcEEEEeccchHHhhhhheeccccccceeeccchhcCCcceEEEEeccCChhhhhHHH
Confidence 78999999999999999999999999999999999999999875 345789999999999999999999999999999
Q ss_pred HHHHHHHhcCCceEEEEccCCcEEEEecchhHHHHHHHHHHhhhccceEEEeCCeeeEEecCCCCCCCCccccccccCCc
Q 047363 555 KGLRLLNRADPFVEVSVSSRGENVLAAAGEVHLERCIKDLKERFAKVSLEVSPPLVSYKETIEGDTSNPLQNVILLSGSS 634 (876)
Q Consensus 555 ~gL~~L~~~DP~l~v~~~etGE~vl~g~GElHLe~~l~dL~~~fa~vei~vs~P~V~yrETI~~~~~~~~~~~~~~~~~~ 634 (876)
+||++.++++|.+..+++|+|||+|.|.|||+|+|+++|||+.|+.|||+|++|+|.|+||+.++ ++
T Consensus 604 dgLrKinKsYPl~~tkVEESGEHvilGtGElYmDcvlyDLR~~yseieikvaDPvv~F~Et~vet-------------ss 670 (971)
T KOG0468|consen 604 DGLRKINKSYPLVITKVEESGEHVILGTGELYMDCVLYDLRKSYSEIEIKVADPVVRFCETVVET-------------SS 670 (971)
T ss_pred HHHHhhcccCCcEEEehhhcCceEEecCchhhHHHHHHHHHHHHhhhceeecCceeEEEEeeecc-------------cc
Confidence 99999999999999999999999999999999999999999999999999999999999999763 45
Q ss_pred ceEEeecCCCceEEEEEeecCChhHHHHHHhhhhhhhhhhccCCCcccccccCCCCCCCChHHHHHHHHHHHHHhhhhcC
Q 047363 635 DYFEKTTPNGRCVVRVQVMKLPFTVTKVLDECADLLGIIIGGQANKSLETQRSSSGEDDNPIEALRKRIMDAVEDHISAG 714 (876)
Q Consensus 635 ~~~~~~t~n~~~~i~v~a~PLp~~v~~~le~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 714 (876)
..|.+.|||++|+|+|.+|||..++.+.||++ .... .+. ++++-+.|+.
T Consensus 671 ikcfaetpnkknkItmiaEPlek~l~eDiEng----------~v~I------------~wn----~krl~effqt----- 719 (971)
T KOG0468|consen 671 IKCFAETPNKKNKITMIAEPLEKGLAEDIENG----------VVVI------------DWN----RKRLGEFFQT----- 719 (971)
T ss_pred hhhhccCCCccCceeeeechhhhhhhHHhhcC----------eEEe------------ccc----hhhhhhhhhc-----
Confidence 57899999999999999999999999998863 2100 011 5556555554
Q ss_pred CCchHHHHHHhhhHHHHh-hccEEEECCCCCCCeEEEcCCCCCCCCcccceecccccccccccccCCCCCCCCccCCCCC
Q 047363 715 NENDQYRMEKCKVKWQKL-LRRIWALGPRQIGPNILFKPDDKQIDTESSVLVRGSAHVSERLGFVDNSDDGDAAEEIPPG 793 (876)
Q Consensus 715 ~~~~~~~~~~~~~~w~~~-~~~IwafGP~~~g~NiL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 793 (876)
+|+ ||.+ +++||||||+.+|||||+ |+ ||. .+.+
T Consensus 720 ---------~Yd--WDlLAaRsiWaFgpd~~GpNiL~-------dD--------------TLp--~evd----------- 754 (971)
T KOG0468|consen 720 ---------KYD--WDLLAARSIWAFGPDYTGPNILL-------DD--------------TLP--TEVD----------- 754 (971)
T ss_pred ---------ccc--hhhhhhcceeccCCCCCCCceee-------cC--------------cCc--chhh-----------
Confidence 377 9986 667999999999999999 55 222 1222
Q ss_pred CCccchhhhhhhHHHHHHHHHHHhcCCCCCCCCcceeEEEEEEEee-cccccccc
Q 047363 794 VNRASFVEAQSLESSIVSGFQLATASGPLCDEPMWGLAFIVEAYIS-SNFLRILS 847 (876)
Q Consensus 794 ~~~~~~~~~~~~~~siv~GFq~at~~GPLceEp~~gv~f~i~d~~~-~~~~~~~~ 847 (876)
+.+++.+|+||+|||||+++|||||+||+|||+|+|.|+++ .+.||.-.
T Consensus 755 -----k~ll~~vkesivQGFqW~trEGPLc~EpIr~VkfKlld~~ia~e~l~rgg 804 (971)
T KOG0468|consen 755 -----KNLLSSVKESIVQGFQWGTREGPLCDEPIRNVKFKLLDAVIAPEPLHRGG 804 (971)
T ss_pred -----HHHHHHHHHHHHHHHHHHhccCCccCCcccceeEEEeecccCccccccCC
Confidence 77899999999999999999999999999999999999965 67777543
No 3
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.2e-129 Score=1101.26 Aligned_cols=714 Identities=51% Similarity=0.808 Sum_probs=606.3
Q ss_pred CCCCCCCCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEc
Q 047363 1 MGDSDTRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLID 80 (876)
Q Consensus 1 m~~~~~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlID 80 (876)
|.+.++++|||||+++|+|||||||+++|+.. +|+|+++.+|++||+|++++||.||||++++.|++..++|.+||||
T Consensus 1 ~~~~~~~~irn~~~vahvdhgktsladsl~as--ngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlid 78 (887)
T KOG0467|consen 1 ALQKGSEGIRNICLVAHVDHGKTSLADSLVAS--NGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLID 78 (887)
T ss_pred CCCCCCCceeEEEEEEEecCCccchHHHHHhh--ccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEec
Confidence 45678899999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred CCCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccccccccChHHHHHHHHHHHHH
Q 047363 81 SPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLISELKLTPLEAYNRLLRIVHE 160 (876)
Q Consensus 81 TPGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~~e~~~~~~~~~~~l~~~l~~ 160 (876)
+|||+||++|+.+|.+.||||+++||+++|++.||..++||++..++.++||||||||++.+++++|.++|.++-+++++
T Consensus 79 spghvdf~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~~~~~~lvinkidrl~~el~lsp~ea~~~l~r~i~~ 158 (887)
T KOG0467|consen 79 SPGHVDFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIEGLKPILVINKIDRLITELKLSPQEAYEHLLRVIEQ 158 (887)
T ss_pred CCCccchhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHccCceEEEEehhhhHHHHHhcChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccccccccccccccccCcccccccccccccccccccccCCCCcEEEEeccCCCccchHHHHHHHHHhcCCCHH
Q 047363 161 VNGIMSAYKSEKYLSDVDSLLSVPSEKLGDENLQFIEDDEEDTFQPQKGNVAFVCGLDGWGFSISEFAEFYATKLGASTA 240 (876)
Q Consensus 161 vn~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~~gnV~f~Sa~~Gw~ftl~~fa~~y~~k~~~~~~ 240 (876)
+|.++++++.+....+ +..+.++ +...+|+|.+|||+|+||++||+|.+.+||++|.+|+|.+.+
T Consensus 159 vn~~i~~~~~~~v~l~--------------~~~~~i~-d~~~~F~p~kgNVif~~A~~~~~f~~~~fak~~~~kl~~k~~ 223 (887)
T KOG0467|consen 159 VNGVIGQFLGGIVELD--------------DNWENIE-DEEITFGPEDGNVIFASALDGWGFGIEQFAKFYAKKLGLKDA 223 (887)
T ss_pred hhhHHHHhhcchhhcc--------------chhhhhh-hcceeecCCCCcEEEEEecccccccHHHHHHHHHHhcChhhh
Confidence 9999999877633221 1112233 578899999999999999999999999999999999999999
Q ss_pred HHHHhhcccceecCCCcccccccCCCCCCCCCCchhhhhchhHHHHHHHHcCCCCcHHHHHHHHHHcCCCCCHHHHhccC
Q 047363 241 ALEKALWGPRYFNPKTKMIVGKKGISTGTKARPMFVQFVLEPLWQVYQAALEPDGDKGVLEKVIKSFNLSIPRRELQNKD 320 (876)
Q Consensus 241 ~l~k~LWGd~y~~~ktkk~~~~~~~~~~~~~~p~Fv~fiL~pi~~l~~~v~~~d~~~~~l~k~l~~~g~~l~~~~l~~~~ 320 (876)
.+.+.||||||++||||++...++.+++ +|+|+||||+|+|++|+...... +.++++|++.++|+++.+++++
T Consensus 224 al~k~lwgd~y~~~ktk~I~~~~~~~gr---kplf~~~vle~lw~iy~~~~~~~-d~~~~~ki~k~l~i~~l~r~~~--- 296 (887)
T KOG0467|consen 224 ALLKFLWGDRYIDPKTKRICEGKKLKGR---KPLFVQFVLENLWRIYELALKSR-DKEKLEKIAKSLNIKLLPRDLR--- 296 (887)
T ss_pred hhhhhhccceeecchhhhhhcccCcccC---CCccceeehhhHHHHHHHHhccc-hHHHHHHHhhhcccccchHHHH---
Confidence 9999999999999999999877776665 79999999999999999764433 3459999999999999999987
Q ss_pred hHHHHHHhhhcccccHHHHHHHHhhcCCCcccccchhhhcccccccccCCcccccccchhhhhhhhhcccCCCCCCCeEE
Q 047363 321 PKAVLQAVLSHWLPLSDAILSMVVKCIPDPISAQSYRISRLLPKREILDNDVDCNVLTEADFVRKSVEVCNSSPEAPCVA 400 (876)
Q Consensus 321 ~k~ll~~v~~~~lp~~~~lLd~i~~~lPsP~~a~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~cd~~~~~plv~ 400 (876)
.++.++|++|||++++++-+++.++|+|.+++..|..++++.+. +. ..-+++.++.+|+ +++|+++
T Consensus 297 --~ll~~im~~wLPls~avll~a~~~lp~pl~~~~~r~~rl~~s~~------~~----~~~~~~~~v~~~~--~~~pviv 362 (887)
T KOG0467|consen 297 --NLLDAIMSTWLPLSDAVLLTVVYKLPDPIRSQAERGLRLLSSSD------HR----SDPPLTKAVKSCS--KESPVLV 362 (887)
T ss_pred --HHHHHHHHhhcccccchHHHHHHhcCCHHHHHHHhhceeccCcc------cc----cChHhhhhhhcCC--CCCcEEE
Confidence 79999999999999999999999999999999999999885311 10 0115677888898 8899999
Q ss_pred EEEEeeeecccccCCCCCCccccccccCCCCCCCCccceEEEEEEEeCccCCCCEEEEeccccCCcchhhhccccceeEE
Q 047363 401 FVSKMFAVPIKMLPQRGSNGEILDNYADKGGNGESEECFLAFARIFSGVLYSGQRVFVLSALYDPLKVESMQKHIQEAEL 480 (876)
Q Consensus 401 ~V~K~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iaf~RV~SGtL~~G~~v~vlg~~y~~~~~~~~~~~~~~~~I 480 (876)
||+||++.|.+.+|.+ ++++|+||||||++.||.||+++| +|..++ |+.+.+|
T Consensus 363 ~Vskm~~~~~k~lp~~---------------------~l~~~ari~sgTlr~g~~v~v~~p--d~~~~e----~i~~~~i 415 (887)
T KOG0467|consen 363 FVSKMLATPLKYLPQS---------------------RLLAFARIFSGTLRVGQVVYVLGP--DPLSPE----HITECTV 415 (887)
T ss_pred EEEeeeccchhhCchh---------------------hheeeeeeccCceeeccEeeecCC--CCCCcc----eeeeeee
Confidence 9999999998877741 279999999999999999999998 555554 6788999
Q ss_pred eEEEEecCCceeecceeeCCCeEEEecCCceeeccceecCCCCcccCCCccccCCceeEEEEeeCCCccHHHHHHHHHHH
Q 047363 481 QSLYLMMGQGLKPVASAKAGNVVAIRGLGQQILKSATLSSTRNCWPFSSMVFQVSPTLRVAIEPSDPADMGALMKGLRLL 560 (876)
Q Consensus 481 ~~L~l~~G~~~~~v~~v~AGnIv~I~GL~~~i~k~~Tl~s~~~~~~~~~~~~~~~Pvv~vaIEP~~~~d~~kL~~gL~~L 560 (876)
.+||++||+++++.+++++||+++|+| .+.+++++|||+...|.++..+.|...|++||||||.+|.||++|.+||++|
T Consensus 416 e~lyl~mgqelv~~d~v~~gnv~~I~g-~~~vlks~TL~s~~~~~p~~~~~f~~tp~vrvaiep~~p~em~~L~~glkll 494 (887)
T KOG0467|consen 416 ESLYLFMGQELVPLDEVPSGNVVAIGG-AGIVLKSATLCSKVPCGPNLVVNFQITPIVRVAIEPDDPDEMDKLVEGLKLL 494 (887)
T ss_pred hhhHHhhcccceeeeccCCCcEEEecc-cceEeccceecccCCCcceeeeeeeeeeEEEEEeecCChHHhHHHHHHHHhh
Confidence 999999999999999999999999999 8889999999998777777668888999999999999999999999999999
Q ss_pred HhcCCceEEEEccCCcEEEEecchhHHHHHHHHHHhhhccceEEEeCCeeeEEecCCCC-CCCCccccccccCCcceEEe
Q 047363 561 NRADPFVEVSVSSRGENVLAAAGEVHLERCIKDLKERFAKVSLEVSPPLVSYKETIEGD-TSNPLQNVILLSGSSDYFEK 639 (876)
Q Consensus 561 ~~~DP~l~v~~~etGE~vl~g~GElHLe~~l~dL~~~fa~vei~vs~P~V~yrETI~~~-~~~~~~~~~~~~~~~~~~~~ 639 (876)
++.|||+++.++++|||++.++||+|||+|++||++ |++++|++|+|.||||||+.+. .++ .+ .+.+....
T Consensus 495 ~~adp~v~i~v~~~gEhvl~~aGevhlerc~kDL~e-fa~i~i~vSeP~vpfrET~~e~s~l~--~~-----~~I~~~~~ 566 (887)
T KOG0467|consen 495 NQADPFVKIRVEENGEHVLVTAGEVHLERCLKDLKE-FAKIEISVSEPLVPFRETIIEDSDLL--AN-----LSIGQETK 566 (887)
T ss_pred cccchhhHHHHhhccceeeeeccHHHHHHHHHHHhh-hhceEEEecCCccchhhhccccchhh--hh-----hhcCcccc
Confidence 999999999999999999999999999999999999 9999999999999999999332 222 11 23455667
Q ss_pred ecCCCceEEEEEeecCChhHHHHHHhhhhhhhhhhccCCCccc--ccccCCCCCCCChHHHHHHHHHHHHHhhhhcCCCc
Q 047363 640 TTPNGRCVVRVQVMKLPFTVTKVLDECADLLGIIIGGQANKSL--ETQRSSSGEDDNPIEALRKRIMDAVEDHISAGNEN 717 (876)
Q Consensus 640 ~t~n~~~~i~v~a~PLp~~v~~~le~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 717 (876)
..++++..|.+++.||+..+++++.+|+.++..+..|..+... ..+..+ ..+ .-.+++.+..... .
T Consensus 567 ~~~~~~~ki~~~~~pl~~~~v~~l~~~~~ti~~i~~~~~~~~~i~e~~k~~----~~e----~ls~~~s~~~~~~----~ 634 (887)
T KOG0467|consen 567 CLPRGQLKIKLRVVPLSGAVVDLLDKNSSLISNILRGESRQVPIDESQKGS----FEE----NLSLLISLERLYE----F 634 (887)
T ss_pred cccccceeEEeeecccccceeccccccchhccchhcccccccccccccccc----ccc----cccHHHHHHHHhh----c
Confidence 8899999999999999999999999999999988877631110 000000 001 1112222322210 0
Q ss_pred hHHHHHHhhhHHHHhhccEEEECCCCCCCeEEEcCCCCCCCCcccceecccccccccccccCCCCCCCCccCCCCCCCcc
Q 047363 718 DQYRMEKCKVKWQKLLRRIWALGPRQIGPNILFKPDDKQIDTESSVLVRGSAHVSERLGFVDNSDDGDAAEEIPPGVNRA 797 (876)
Q Consensus 718 ~~~~~~~~~~~w~~~~~~IwafGP~~~g~NiL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 797 (876)
++. .++. | .+.+++|||||+++|||||++.+. .+.. ..+ . .
T Consensus 635 ek~-~e~~---~-~~~~~~~Afgp~r~g~nilf~~~~-------~~~~-s~~--~------------------------~ 675 (887)
T KOG0467|consen 635 EKP-REKL---G-SFKDQIIAFGPRRVGPNILFNKDS-------KLYR-SVR--R------------------------G 675 (887)
T ss_pred ccc-HHHH---H-HHHhhhhcccccccCCceeecccc-------chhh-hhh--h------------------------c
Confidence 011 1111 2 223889999999999999995431 1111 000 0 0
Q ss_pred chhhhhhhHHHHHHHHHHHhcCCCCCCCCcceeEEEEEEEeec
Q 047363 798 SFVEAQSLESSIVSGFQLATASGPLCDEPMWGLAFIVEAYISS 840 (876)
Q Consensus 798 ~~~~~~~~~~siv~GFq~at~~GPLceEp~~gv~f~i~d~~~~ 840 (876)
..-..+ +.++|++|||+||.+||||+|||+|+||.++.+...
T Consensus 676 t~~~~~-l~~~ivsgfql~~~sGPlc~Ep~~g~~~~~es~~~e 717 (887)
T KOG0467|consen 676 TPFVAR-LSESIVSGFQLATSSGPLCNEPMQGICFVLESGSAE 717 (887)
T ss_pred chHHHH-HHHHHhhhHhhhhccCcccccCcccEEEEeeccCcc
Confidence 011244 999999999999999999999999999999986443
No 4
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=100.00 E-value=3.8e-118 Score=1092.62 Aligned_cols=663 Identities=37% Similarity=0.655 Sum_probs=577.1
Q ss_pred CCCCCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEc-----------
Q 047363 4 SDTRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYK----------- 72 (876)
Q Consensus 4 ~~~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~----------- 72 (876)
.++++||||||+||+|||||||+++|++. +|.++....|..+++|+.++|++||+|++++.+++.|.
T Consensus 14 ~~~~~Irni~iiGhvd~GKTTL~~~Ll~~--~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~ 91 (843)
T PLN00116 14 DKKHNIRNMSVIAHVDHGKSTLTDSLVAA--AGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKG 91 (843)
T ss_pred hCccCccEEEEEcCCCCCHHHHHHHHHHh--cCCcccccCCceeeccCcHHHHHhCCceecceeEEEeeccccccccccc
Confidence 46889999999999999999999999999 88888877888899999999999999999999999984
Q ss_pred -----CeEEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccccccccCh
Q 047363 73 -----DYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLISELKLTP 147 (876)
Q Consensus 73 -----~~~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~~e~~~~~ 147 (876)
++.|||||||||.||..++.+|++.+|+||+|||+.+|++.||+.+|+++...++|+|+|+||||++..++++++
T Consensus 92 ~~~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p~i~~iNK~D~~~~~~~~~~ 171 (843)
T PLN00116 92 ERDGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDG 171 (843)
T ss_pred ccCCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCCEEEEEECCcccchhhcCCH
Confidence 789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhccccccccccccccccCcccccccccccccccccccccCCCCcEEEEeccCCCccchHHH
Q 047363 148 LEAYNRLLRIVHEVNGIMSAYKSEKYLSDVDSLLSVPSEKLGDENLQFIEDDEEDTFQPQKGNVAFVCGLDGWGFSISEF 227 (876)
Q Consensus 148 ~~~~~~l~~~l~~vn~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~~gnV~f~Sa~~Gw~ftl~~f 227 (876)
+++|.++.++++++|.++..+... ....++|+|.+|||+|+|+++||+|++..|
T Consensus 172 ~~~~~~~~~vi~~in~~~~~~~~~--------------------------~~~~~~~~P~~~nv~F~s~~~~~~~~l~~~ 225 (843)
T PLN00116 172 EEAYQTFSRVIENANVIMATYEDP--------------------------LLGDVQVYPEKGTVAFSAGLHGWAFTLTNF 225 (843)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccc--------------------------ccCceEEccCCCeeeeeecccCEEEEhHHH
Confidence 999999999999999888765311 012357999999999999999999999999
Q ss_pred HHHHHHhcCCCHHHHHHhhcccceecCCCcccccccCCCCCCCCCCchhhhhchhHHHHHHHHcCCCCcHHHHHHHHHHc
Q 047363 228 AEFYATKLGASTAALEKALWGPRYFNPKTKMIVGKKGISTGTKARPMFVQFVLEPLWQVYQAALEPDGDKGVLEKVIKSF 307 (876)
Q Consensus 228 a~~y~~k~~~~~~~l~k~LWGd~y~~~ktkk~~~~~~~~~~~~~~p~Fv~fiL~pi~~l~~~v~~~d~~~~~l~k~l~~~ 307 (876)
+.+|..++++..+.|.+.||||+||+++++++...+. ..... .+.|++|||+|+|++|+++++.|++ +|++|++.+
T Consensus 226 ~~~y~~~~~~~~~~l~~~lwg~~~~~~~~~~~~~~~~-~~~~~-~~~f~~~il~~~~~l~e~v~~~d~~--lle~~l~~~ 301 (843)
T PLN00116 226 AKMYASKFGVDESKMMERLWGENFFDPATKKWTTKNT-GSPTC-KRGFVQFCYEPIKQIINTCMNDQKD--KLWPMLEKL 301 (843)
T ss_pred HHHHHHHhCCcHHHHHHHhhccceEcCCCceEEecCC-CCchh-hHHHHHHHHHHHHHHHHHHHhcCHH--HHHHHHHhC
Confidence 9999999999999999999999999999988865432 11112 5789999999999999999988766 999999988
Q ss_pred CCCCCHHHHhccChHHHHHHhhhcccccHHHHHHHHhhcCCCcccccchhhhcccccccccCCcccccccchhhhhhhhh
Q 047363 308 NLSIPRRELQNKDPKAVLQAVLSHWLPLSDAILSMVVKCIPDPISAQSYRISRLLPKREILDNDVDCNVLTEADFVRKSV 387 (876)
Q Consensus 308 g~~l~~~~l~~~~~k~ll~~v~~~~lp~~~~lLd~i~~~lPsP~~a~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (876)
+++|++++++. +++.+++.+|.+|||++++|||+|++++|||.++++.|+..+|.+. . .++...++
T Consensus 302 ~~~l~~~el~~-~~~~l~~~~~~pv~~~s~~Lld~i~~~lPsP~~~~~~~~~~~~~~~------~-------~~~~~~~~ 367 (843)
T PLN00116 302 GVTLKSDEKEL-MGKALMKRVMQTWLPASDALLEMIIFHLPSPAKAQRYRVENLYEGP------L-------DDKYATAI 367 (843)
T ss_pred CCCCCHHHHhh-hhHHHHHHHHHhhcCChHHHHHHHHHhCCChHHhhhHHhhhccCCC------C-------Cccccchh
Confidence 89999999998 9999999999999999999999999999999999888888877321 0 11334567
Q ss_pred cccCCCCCCCeEEEEEEeeeecccccCCCCCCccccccccCCCCCCCCccceEEEEEEEeCccCCCCEEEEeccccCCcc
Q 047363 388 EVCNSSPEAPCVAFVSKMFAVPIKMLPQRGSNGEILDNYADKGGNGESEECFLAFARIFSGVLYSGQRVFVLSALYDPLK 467 (876)
Q Consensus 388 ~~cd~~~~~plv~~V~K~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iaf~RV~SGtL~~G~~v~vlg~~y~~~~ 467 (876)
..|| +++|++|||||++++++. +.|++|+|||||+|++||+|+|+|++|+..+
T Consensus 368 ~~~d--~~~pl~a~VfK~~~~~~~-------------------------g~~l~~~RVysGtL~~g~~v~v~~~n~~~~~ 420 (843)
T PLN00116 368 RNCD--PNGPLMLYVSKMIPASDK-------------------------GRFFAFGRVFSGTVATGMKVRIMGPNYVPGE 420 (843)
T ss_pred hcCC--CCCCeEEEEEeeeecCCC-------------------------CeEEEEEEEEeeeecCCCEEEEeCCCCCCCC
Confidence 8999 889999999999876532 2379999999999999999999999988764
Q ss_pred hhhhccccceeEEeEEEEecCCceeecceeeCCCeEEEecCCceeeccceecCCC--CcccCCCccccCCceeEEEEeeC
Q 047363 468 VESMQKHIQEAELQSLYLMMGQGLKPVASAKAGNVVAIRGLGQQILKSATLSSTR--NCWPFSSMVFQVSPTLRVAIEPS 545 (876)
Q Consensus 468 ~~~~~~~~~~~~I~~L~l~~G~~~~~v~~v~AGnIv~I~GL~~~i~k~~Tl~s~~--~~~~~~~~~~~~~Pvv~vaIEP~ 545 (876)
.++ ...++|++||+++|++.++|++|+|||||+|.||++++.+|+||++.. .+.++.++.++.+|+++++|||.
T Consensus 421 ~~~----~~~~~v~~l~~~~g~~~~~v~~~~AGdI~ai~gl~~~~~~gdTL~~~~~~~~~~l~~~~~~~~Pv~~~aIeP~ 496 (843)
T PLN00116 421 KKD----LYVKSVQRTVIWMGKKQESVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIKAMKFSVSPVVRVAVQCK 496 (843)
T ss_pred ccc----cceeEhheEEEecCCCceECcEECCCCEEEEEeecccccCCceecCCcccCCccccccccCCCceEEEEEEEC
Confidence 432 234689999999999999999999999999999998778899998776 56778888875599999999999
Q ss_pred CCccHHHHHHHHHHHHhcCCceEEEEccCCcEEEEecchhHHHHHHHHHHhhhc-cceEEEeCCeeeEEecCCCCCCCCc
Q 047363 546 DPADMGALMKGLRLLNRADPFVEVSVSSRGENVLAAAGEVHLERCIKDLKERFA-KVSLEVSPPLVSYKETIEGDTSNPL 624 (876)
Q Consensus 546 ~~~d~~kL~~gL~~L~~~DP~l~v~~~etGE~vl~g~GElHLe~~l~dL~~~fa-~vei~vs~P~V~yrETI~~~~~~~~ 624 (876)
+++|++||.+||++|+++||+++++.+||||++|+||||+|||+|++||+++|+ +|+|++|+|+|+|||||.+++.
T Consensus 497 ~~~d~~kL~~aL~~L~~eDPsl~v~~~etge~il~g~GElHLEi~~~rL~~~f~~~vev~~s~p~V~yrETI~~~~~--- 573 (843)
T PLN00116 497 NASDLPKLVEGLKRLAKSDPMVQCTIEESGEHIIAGAGELHLEICLKDLQDDFMGGAEIKVSDPVVSFRETVLEKSC--- 573 (843)
T ss_pred ChhhHHHHHHHHHHHHHhCCCeEEEEcCCCCEEEEEccHHHHHHHHHHHHHHhhCCCcEEEcCCeEEEEeccccccc---
Confidence 999999999999999999999999888999999999999999999999999998 9999999999999999987542
Q ss_pred cccccccCCcceEEeecCCCceEEEEEeecCChhHHHHHHhhhhhhhhhhccCCCcccccccCCCCCCCChHHHHHHHHH
Q 047363 625 QNVILLSGSSDYFEKTTPNGRCVVRVQVMKLPFTVTKVLDECADLLGIIIGGQANKSLETQRSSSGEDDNPIEALRKRIM 704 (876)
Q Consensus 625 ~~~~~~~~~~~~~~~~t~n~~~~i~v~a~PLp~~v~~~le~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (876)
.....++++++++++++++|||+++.+.++.+. + +. .++ .+.+.
T Consensus 574 ----------~~~~~~~~~~~~~v~l~iePl~~~~~~~ie~~~-----~--~~---------------~~~----~~~~~ 617 (843)
T PLN00116 574 ----------RTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGR-----I--GP---------------RDD----PKIRS 617 (843)
T ss_pred ----------CcEEEecCCceEEEEEEEEECCHHHHHHHHcCC-----c--cc---------------Ccc----hHHHH
Confidence 122356789999999999999999988888642 0 00 000 11111
Q ss_pred HHHHhhhhcCCCchHHHHHHhhhHHHH-hhccEEEECCCCCCCeEEEcCCCCCCCCcccceecccccccccccccCCCCC
Q 047363 705 DAVEDHISAGNENDQYRMEKCKVKWQK-LLRRIWALGPRQIGPNILFKPDDKQIDTESSVLVRGSAHVSERLGFVDNSDD 783 (876)
Q Consensus 705 ~~l~~~~~~~~~~~~~~~~~~~~~w~~-~~~~IwafGP~~~g~NiL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 783 (876)
+.|+ .+|+ |+. .+++||||||+..|||+|+ |.+.+.++
T Consensus 618 ~~l~--------------~~~~--~~~~~~~~i~~~gp~~~~~~~~~-------~~~~g~~~------------------ 656 (843)
T PLN00116 618 KILA--------------EEFG--WDKDLAKKIWCFGPETTGPNMVV-------DMCKGVQY------------------ 656 (843)
T ss_pred HHhh--------------hhcC--cchhhhcCeeeecCCCCCceEEE-------ECCcchhh------------------
Confidence 1111 1244 875 6788999999999999999 54444222
Q ss_pred CCCccCCCCCCCccchhhhhhhHHHHHHHHHHHhcCCCCCCCCcceeEEEEEEEeecc
Q 047363 784 GDAAEEIPPGVNRASFVEAQSLESSIVSGFQLATASGPLCDEPMWGLAFIVEAYISSN 841 (876)
Q Consensus 784 ~~~~~~~~~~~~~~~~~~~~~~~~siv~GFq~at~~GPLceEp~~gv~f~i~d~~~~~ 841 (876)
+++++++|++|||||+++||||+|||+||+|.|.|+.+|.
T Consensus 657 ------------------~~~i~~ai~~G~~~a~~~GpL~g~Pv~~V~v~l~d~~~h~ 696 (843)
T PLN00116 657 ------------------LNEIKDSVVAGFQWATKEGALAEENMRGICFEVCDVVLHA 696 (843)
T ss_pred ------------------HHHHHHHHHHHHHHHHhcCCccCCeeeeEEEEEEEeeccC
Confidence 5689999999999999999999999999999999998885
No 5
>PTZ00416 elongation factor 2; Provisional
Probab=100.00 E-value=2.2e-116 Score=1074.94 Aligned_cols=663 Identities=37% Similarity=0.670 Sum_probs=572.4
Q ss_pred CCCCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEc----------Ce
Q 047363 5 DTRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYK----------DY 74 (876)
Q Consensus 5 ~~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~----------~~ 74 (876)
++++||||+|+||+|||||||+++|++. +|.+++...|+.+++|+.++|++||+|++++.+++.|. ++
T Consensus 15 ~~~~irni~iiGh~d~GKTTL~~~Ll~~--~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~ 92 (836)
T PTZ00416 15 NPDQIRNMSVIAHVDHGKSTLTDSLVCK--AGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPF 92 (836)
T ss_pred CccCcCEEEEECCCCCCHHHHHHHHHHh--cCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCce
Confidence 5789999999999999999999999999 88888777888889999999999999999999999987 78
Q ss_pred EEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccccccccChHHHHHHH
Q 047363 75 AINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLISELKLTPLEAYNRL 154 (876)
Q Consensus 75 ~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~~e~~~~~~~~~~~l 154 (876)
.|||+|||||.||..++..+++.+|+||+|||+.+|++.|++.+|+++.+.++|+|+|+||+|+...+++++|+++|.++
T Consensus 93 ~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~iv~iNK~D~~~~~~~~~~~~~~~~~ 172 (836)
T PTZ00416 93 LINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIRPVLFINKVDRAILELQLDPEEIYQNF 172 (836)
T ss_pred EEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCEEEEEEChhhhhhhcCCCHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhccccccccccccccccCcccccccccccccccccccccCCCCcEEEEeccCCCccchHHHHHHHHHh
Q 047363 155 LRIVHEVNGIMSAYKSEKYLSDVDSLLSVPSEKLGDENLQFIEDDEEDTFQPQKGNVAFVCGLDGWGFSISEFAEFYATK 234 (876)
Q Consensus 155 ~~~l~~vn~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~~gnV~f~Sa~~Gw~ftl~~fa~~y~~k 234 (876)
.++++++|..+..+... ..+.++|+|..|||.|+|+.+||+||+.+|+..|+++
T Consensus 173 ~~ii~~in~~l~~~~~~--------------------------~~~~~~~~p~~~~vp~~s~~~~~~f~~~~F~~~y~~~ 226 (836)
T PTZ00416 173 VKTIENVNVIIATYNDE--------------------------LMGDVQVYPEKGTVAFGSGLQGWAFTLTTFARIYAKK 226 (836)
T ss_pred HHHHHHHHHHHHhcccc--------------------------cccceecceeccEEEEEeccccceeehHHhhhhhhhh
Confidence 99999999988765321 0023568999999999999999999999999999999
Q ss_pred cCCCHHHHHHhhcccceecCCCcccccccCC-CCCCCCCCchhhhhchhHHHHHHHHcCCCCcHHHHHHHHHHcCCCCCH
Q 047363 235 LGASTAALEKALWGPRYFNPKTKMIVGKKGI-STGTKARPMFVQFVLEPLWQVYQAALEPDGDKGVLEKVIKSFNLSIPR 313 (876)
Q Consensus 235 ~~~~~~~l~k~LWGd~y~~~ktkk~~~~~~~-~~~~~~~p~Fv~fiL~pi~~l~~~v~~~d~~~~~l~k~l~~~g~~l~~ 313 (876)
++++...|.+.+|||+||+++++++...+.. ..+.. +++|++|+++|+|+||+++++.|++ +|++|++.+|+++++
T Consensus 227 ~~~~~~~l~~~~wg~~~~~~~~~~~~~~~~~~~~~~~-~~~f~~~~~~~~~~l~e~~~~~dd~--lle~~l~~~~~~l~~ 303 (836)
T PTZ00416 227 FGVEESKMMERLWGDNFFDAKTKKWIKDETNAQGKKL-KRAFCQFILDPICQLFDAVMNEDKE--KYDKMLKSLNISLTG 303 (836)
T ss_pred cCCcHHHHHHHHhccccccCCCCEEEeccCCcccccc-chHHHHHHHHHHHHHHHHHHhcCHH--HHHHHHHHcCCCcCh
Confidence 9999999999999999999998887644321 12223 6899999999999999999988876 999999999999999
Q ss_pred HHHhccChHHHHHHhhhcccccHHHHHHHHhhcCCCcccccchhhhcccccccccCCcccccccchhhhhhhhhcccCCC
Q 047363 314 RELQNKDPKAVLQAVLSHWLPLSDAILSMVVKCIPDPISAQSYRISRLLPKREILDNDVDCNVLTEADFVRKSVEVCNSS 393 (876)
Q Consensus 314 ~~l~~~~~k~ll~~v~~~~lp~~~~lLd~i~~~lPsP~~a~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~cd~~ 393 (876)
++++. ..+.++++++++|+|+.++|||+|++++|||.+++..|+.++|.+. ..+....+++.||
T Consensus 304 ~e~~~-~~~~l~~~~~~~~~Pv~~~Lld~i~~~lPsP~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~d-- 367 (836)
T PTZ00416 304 EDKEL-TGKPLLKAVMQKWLPAADTLLEMIVDHLPSPKEAQKYRVENLYEGP-------------MDDEAANAIRNCD-- 367 (836)
T ss_pred HHhcc-ChHHHHHHHHHHHhchHHHHHHHHHHhCCChhHhCchhhhccccCC-------------CCccccceeeccC--
Confidence 88653 3468999999999999999999999999999998888887776321 0112344678999
Q ss_pred CCCCeEEEEEEeeeecccccCCCCCCccccccccCCCCCCCCccceEEEEEEEeCccCCCCEEEEeccccCCcchhhhcc
Q 047363 394 PEAPCVAFVSKMFAVPIKMLPQRGSNGEILDNYADKGGNGESEECFLAFARIFSGVLYSGQRVFVLSALYDPLKVESMQK 473 (876)
Q Consensus 394 ~~~plv~~V~K~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iaf~RV~SGtL~~G~~v~vlg~~y~~~~~~~~~~ 473 (876)
+++|++|||||++++++. +.|++|+|||||||++||+|+|+|++++.++.++
T Consensus 368 ~~~plva~VfK~~~~~~~-------------------------g~~~s~~RV~SGtL~~g~~v~v~~~~~~~~~~e~--- 419 (836)
T PTZ00416 368 PNGPLMMYISKMVPTSDK-------------------------GRFYAFGRVFSGTVATGQKVRIQGPNYVPGKKED--- 419 (836)
T ss_pred CCCCeEEEEEeeeecCCC-------------------------CcEEEEEEEEeeeecCCCEEEEeCCCCCCCCccc---
Confidence 889999999999987642 2379999999999999999999999988754332
Q ss_pred ccceeEEeEEEEecCCceeecceeeCCCeEEEecCCceeeccceecCCCCcccCCCccccCCceeEEEEeeCCCccHHHH
Q 047363 474 HIQEAELQSLYLMMGQGLKPVASAKAGNVVAIRGLGQQILKSATLSSTRNCWPFSSMVFQVSPTLRVAIEPSDPADMGAL 553 (876)
Q Consensus 474 ~~~~~~I~~L~l~~G~~~~~v~~v~AGnIv~I~GL~~~i~k~~Tl~s~~~~~~~~~~~~~~~Pvv~vaIEP~~~~d~~kL 553 (876)
....+|++||+++|++..+|++|+|||||+|.||++++.+++||++...+.++.++.++++|+++++|||.+++|++||
T Consensus 420 -~~~~~i~~l~~~~g~~~~~v~~v~AGdI~~i~gl~~~~~~tgTL~~~~~~~~l~~i~~~~~Pv~~vaIep~~~~d~~kL 498 (836)
T PTZ00416 420 -LFEKNIQRTVLMMGRYVEQIEDVPCGNTVGLVGVDQYLVKSGTITTSETAHNIRDMKYSVSPVVRVAVEPKNPKDLPKL 498 (836)
T ss_pred -chheecceeEEecCCCceECcEECCCCEEEEEecccceecceeecCCCCcccccccccCCCCeEEEEEEECCHHHHHHH
Confidence 1224699999999999999999999999999999987666779988777788888887669999999999999999999
Q ss_pred HHHHHHHHhcCCceEEEEccCCcEEEEecchhHHHHHHHHHHhhhccceEEEeCCeeeEEecCCCCCCCCccccccccCC
Q 047363 554 MKGLRLLNRADPFVEVSVSSRGENVLAAAGEVHLERCIKDLKERFAKVSLEVSPPLVSYKETIEGDTSNPLQNVILLSGS 633 (876)
Q Consensus 554 ~~gL~~L~~~DP~l~v~~~etGE~vl~g~GElHLe~~l~dL~~~fa~vei~vs~P~V~yrETI~~~~~~~~~~~~~~~~~ 633 (876)
.+||++|.++||++.++.+||||++|+||||+|||+|++||+++|++|+|++|+|+|+|||||.+++
T Consensus 499 ~~aL~~L~~eDPsl~~~~~etgE~il~g~GElHLei~l~~L~~~f~~vev~~s~P~V~yrETI~~~s------------- 565 (836)
T PTZ00416 499 VEGLKRLAKSDPLVVCTTEESGEHIVAGCGELHVEICLKDLEDDYANIDIIVSDPVVSYRETVTEES------------- 565 (836)
T ss_pred HHHHHHHHhhCCceEEEEcCCCCeEEEeCcHhHHHHHHHHHHHHhcCcceEecCCEEEEEEEecccc-------------
Confidence 9999999999999999888999999999999999999999999999999999999999999998753
Q ss_pred cceEEeecCCCceEEEEEeecCChhHHHHHHhhhhhhhhhhccCCCcccccccCCCCCCCChHHHHHHHHHHHHHhhhhc
Q 047363 634 SDYFEKTTPNGRCVVRVQVMKLPFTVTKVLDECADLLGIIIGGQANKSLETQRSSSGEDDNPIEALRKRIMDAVEDHISA 713 (876)
Q Consensus 634 ~~~~~~~t~n~~~~i~v~a~PLp~~v~~~le~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 713 (876)
...+..++++++++++++++|||+++.+.++.+...++. . .+...+.+
T Consensus 566 ~~~~~~~~~~~~~~v~~~~ePl~~~~~~~~~~~~~~~~~---------------------~-----~~~~~~~~------ 613 (836)
T PTZ00416 566 SQTCLSKSPNKHNRLYMKAEPLTEELAEAIEEGKVGPED---------------------D-----PKERANFL------ 613 (836)
T ss_pred cceEEEECCCCCeeEEEEEEECCHHHHhHhhcCcccccc---------------------c-----hhHHHhhh------
Confidence 223556778999999999999999998888864211100 0 01100111
Q ss_pred CCCchHHHHHHhhhHHHH-hhccEEEECCCCCCCeEEEcCCCCCCCCcccceecccccccccccccCCCCCCCCccCCCC
Q 047363 714 GNENDQYRMEKCKVKWQK-LLRRIWALGPRQIGPNILFKPDDKQIDTESSVLVRGSAHVSERLGFVDNSDDGDAAEEIPP 792 (876)
Q Consensus 714 ~~~~~~~~~~~~~~~w~~-~~~~IwafGP~~~g~NiL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 792 (876)
..+|+ |+. .+++||||||+..|+|||+ |.+.+.++
T Consensus 614 --------~~~~~--~~~~~~~~i~~f~~~~~g~nil~-------~~~~~~~~--------------------------- 649 (836)
T PTZ00416 614 --------ADKYE--WDKNDARKIWCFGPENKGPNVLV-------DVTKGVQY--------------------------- 649 (836)
T ss_pred --------hcccC--cchhhhhCeeeccCCCCCCcEEE-------ecCCcccc---------------------------
Confidence 11344 875 5788999999999999999 54333222
Q ss_pred CCCccchhhhhhhHHHHHHHHHHHhcCCCCCCCCcceeEEEEEEEeecc
Q 047363 793 GVNRASFVEAQSLESSIVSGFQLATASGPLCDEPMWGLAFIVEAYISSN 841 (876)
Q Consensus 793 ~~~~~~~~~~~~~~~siv~GFq~at~~GPLceEp~~gv~f~i~d~~~~~ 841 (876)
+.+++++|+.|||||+++||||+|||+||+|.|.|+.+|+
T Consensus 650 ---------~~~~~~av~~G~~~a~~~GpL~g~pv~dv~v~l~d~~~h~ 689 (836)
T PTZ00416 650 ---------MNEIKDSCVSAFQWATKEGVLCDENMRGIRFNILDVTLHA 689 (836)
T ss_pred ---------hHHHHHHHHHHHHHHHhcCcccCCcccceEEEEEEeeccc
Confidence 5579999999999999999999999999999999998885
No 6
>PRK07560 elongation factor EF-2; Reviewed
Probab=100.00 E-value=3e-91 Score=846.55 Aligned_cols=573 Identities=35% Similarity=0.581 Sum_probs=477.4
Q ss_pred CCCCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEE----cCeEEEEEc
Q 047363 5 DTRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHY----KDYAINLID 80 (876)
Q Consensus 5 ~~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~----~~~~inlID 80 (876)
++++||||+|+||+|||||||+++|++. +|.+++...|+.+++|+.+.|++||+|++++.+++.| +++.|||||
T Consensus 16 ~~~~iRni~iigh~d~GKTTL~e~ll~~--~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liD 93 (731)
T PRK07560 16 NPEQIRNIGIIAHIDHGKTTLSDNLLAG--AGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLID 93 (731)
T ss_pred chhcccEEEEEEeCCCCHHHHHHHHHHH--cCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEc
Confidence 5689999999999999999999999999 8888877778888999999999999999999999888 478999999
Q ss_pred CCCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccccccccChHHHHHHHHHHHHH
Q 047363 81 SPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLISELKLTPLEAYNRLLRIVHE 160 (876)
Q Consensus 81 TPGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~~e~~~~~~~~~~~l~~~l~~ 160 (876)
||||.||..++.++++.+|+||+|||+.+|++.+++.+|+++.+.++|+|+|+||+|+..++++.++++++.++...+++
T Consensus 94 tPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~~iv~iNK~D~~~~~~~~~~~~~~~~~~~~~~e 173 (731)
T PRK07560 94 TPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVKPVLFINKVDRLIKELKLTPQEMQQRLLKIIKD 173 (731)
T ss_pred CCCccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCCeEEEEECchhhcccccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccccccccccccccccCcccccccccccccccccccccCCCCcEEEEeccCCCccchHHHHHHHHHhcCCCHH
Q 047363 161 VNGIMSAYKSEKYLSDVDSLLSVPSEKLGDENLQFIEDDEEDTFQPQKGNVAFVCGLDGWGFSISEFAEFYATKLGASTA 240 (876)
Q Consensus 161 vn~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~~gnV~f~Sa~~Gw~ftl~~fa~~y~~k~~~~~~ 240 (876)
+|.++..+....+ ...+.++|.+|||+|+|+++||+|++..+.+.+ +
T Consensus 174 ~~~~l~~~~~~~~-------------------------~~~~~~~~~~~~v~~~sa~~~~~~~~~~~~~~~-----~--- 220 (731)
T PRK07560 174 VNKLIKGMAPEEF-------------------------KEKWKVDVEDGTVAFGSALYNWAISVPMMQKTG-----I--- 220 (731)
T ss_pred HHHHHHHhhhhhh-------------------------hcceeecCCCCcEeeeecccccceeHHHHHHhC-----C---
Confidence 9988765532110 124567899999999999999999997664421 1
Q ss_pred HHHHhhcccceecCCCcccccccCCCCCCCCCCchhhhhchhHHHHHHHHcCCCCcHHHHHHHHHHcCCCCCHHHHhccC
Q 047363 241 ALEKALWGPRYFNPKTKMIVGKKGISTGTKARPMFVQFVLEPLWQVYQAALEPDGDKGVLEKVIKSFNLSIPRRELQNKD 320 (876)
Q Consensus 241 ~l~k~LWGd~y~~~ktkk~~~~~~~~~~~~~~p~Fv~fiL~pi~~l~~~v~~~d~~~~~l~k~l~~~g~~l~~~~l~~~~ 320 (876)
.|. ++|+...+. + .++
T Consensus 221 ---------------------------------~~~--------~l~e~~~~~--~----------------~~~----- 236 (731)
T PRK07560 221 ---------------------------------KFK--------DIIDYYEKG--K----------------QKE----- 236 (731)
T ss_pred ---------------------------------CHH--------HHHHHHhcC--C----------------HHH-----
Confidence 111 122222111 1 111
Q ss_pred hHHHHHHhhhcccccHHHHHHHHhhcCCCcccccchhhhcccccccccCCcccccccchhhhhhhhhcccCCCCCCCeEE
Q 047363 321 PKAVLQAVLSHWLPLSDAILSMVVKCIPDPISAQSYRISRLLPKREILDNDVDCNVLTEADFVRKSVEVCNSSPEAPCVA 400 (876)
Q Consensus 321 ~k~ll~~v~~~~lp~~~~lLd~i~~~lPsP~~a~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~cd~~~~~plv~ 400 (876)
+.+|+|+.+.|||+|++++|||.++++.|.+.++.+ ..+ ++..+.+..|| +++|+++
T Consensus 237 --------l~~~~Pv~~~Lld~I~~~lPsP~~~~~~~~~~~~~~------~~~-------~~~~~~~~~~d--~~~p~~a 293 (731)
T PRK07560 237 --------LAEKAPLHEVVLDMVVKHLPNPIEAQKYRIPKIWKG------DLN-------SEVGKAMLNCD--PNGPLVM 293 (731)
T ss_pred --------HHhhccchhHHHHHHHHhCCChhhhhhhcccccccC------CCC-------ccccceeeccC--CCCCEEE
Confidence 235799999999999999999999998888877632 110 12234567898 8899999
Q ss_pred EEEEeeeecccccCCCCCCccccccccCCCCCCCCccceEEEEEEEeCccCCCCEEEEeccccCCcchhhhccccceeEE
Q 047363 401 FVSKMFAVPIKMLPQRGSNGEILDNYADKGGNGESEECFLAFARIFSGVLYSGQRVFVLSALYDPLKVESMQKHIQEAEL 480 (876)
Q Consensus 401 ~V~K~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iaf~RV~SGtL~~G~~v~vlg~~y~~~~~~~~~~~~~~~~I 480 (876)
||||++++++. .+++|+|||||+|++||.|++.+++ .+++|
T Consensus 294 ~VfK~~~d~~~--------------------------G~va~~RV~sGtL~~Gd~v~~~~~~-------------~~~~v 334 (731)
T PRK07560 294 MVTDIIVDPHA--------------------------GEVATGRVFSGTLRKGQEVYLVGAK-------------KKNRV 334 (731)
T ss_pred EEEeeEEcCCC--------------------------CeEEEEEEEEeEEcCCCEEEEcCCC-------------CceEe
Confidence 99999987752 1699999999999999999987643 23789
Q ss_pred eEEEEecCCceeecceeeCCCeEEEecCCceeeccceecCCCCcccCCCccccCCceeEEEEeeCCCccHHHHHHHHHHH
Q 047363 481 QSLYLMMGQGLKPVASAKAGNVVAIRGLGQQILKSATLSSTRNCWPFSSMVFQVSPTLRVAIEPSDPADMGALMKGLRLL 560 (876)
Q Consensus 481 ~~L~l~~G~~~~~v~~v~AGnIv~I~GL~~~i~k~~Tl~s~~~~~~~~~~~~~~~Pvv~vaIEP~~~~d~~kL~~gL~~L 560 (876)
++||+++|++.+++++++|||||+|.|+++. .+|+||++...+.+|.++.+.++|+++++|+|.+++|.+||.+||++|
T Consensus 335 ~~i~~~~g~~~~~v~~a~AGdIv~i~gl~~~-~~GdtL~~~~~~~~~~~~~~~p~Pv~~~aI~p~~~~d~~kL~~aL~~L 413 (731)
T PRK07560 335 QQVGIYMGPEREEVEEIPAGNIAAVTGLKDA-RAGETVVSVEDMTPFESLKHISEPVVTVAIEAKNPKDLPKLIEVLRQL 413 (731)
T ss_pred heehhhhcCCCceeeeECCCCEEEEEccccc-ccCCEEeCCCccccccccccCCCCeEEEEEEECCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999874 579999887777788887656899999999999999999999999999
Q ss_pred HhcCCceEEEEc-cCCcEEEEecchhHHHHHHHHHHhhhccceEEEeCCeeeEEecCCCCCCCCccccccccCCcceEEe
Q 047363 561 NRADPFVEVSVS-SRGENVLAAAGEVHLERCIKDLKERFAKVSLEVSPPLVSYKETIEGDTSNPLQNVILLSGSSDYFEK 639 (876)
Q Consensus 561 ~~~DP~l~v~~~-etGE~vl~g~GElHLe~~l~dL~~~fa~vei~vs~P~V~yrETI~~~~~~~~~~~~~~~~~~~~~~~ 639 (876)
+++||+++|..+ +|||++|+|+||+|||+|++||+++| +|+|++++|.|+|||||.+++. .+..
T Consensus 414 ~~eDPsl~v~~~~etge~~l~g~GElHLei~~~rL~~~~-~vev~~~~p~V~yrETI~~~~~--------------~~~~ 478 (731)
T PRK07560 414 AKEDPTLVVKINEETGEHLLSGMGELHLEVITYRIKRDY-GIEVVTSEPIVVYRETVRGKSQ--------------VVEG 478 (731)
T ss_pred HhhCCcEEEEEcCCCCCeEEEcCCHHHHHHHHHHHHHHh-CCceEecCCEEEEEEecccCcc--------------ceEE
Confidence 999999999996 79999999999999999999999999 9999999999999999977531 2445
Q ss_pred ecCCCceEEEEEeecCChhHHHHHHhhhhhhhhhhccCCCcccccccCCCCCCCChHHHHHHHHHHHHHhhhhcCCCchH
Q 047363 640 TTPNGRCVVRVQVMKLPFTVTKVLDECADLLGIIIGGQANKSLETQRSSSGEDDNPIEALRKRIMDAVEDHISAGNENDQ 719 (876)
Q Consensus 640 ~t~n~~~~i~v~a~PLp~~v~~~le~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 719 (876)
+++|++++++++++|||.+..+.++.+. +..+ .+ .+++ +.|+..
T Consensus 479 ~~~~~~~~v~l~iePl~~~~~~~~~~~~-----~~~~-----------------~~----~~~~-~~l~~~--------- 522 (731)
T PRK07560 479 KSPNKHNRFYISVEPLEEEVIEAIKEGE-----ISED-----------------MD----KKEA-KILREK--------- 522 (731)
T ss_pred ECCCCceEEEEEEEECCHHHHHHHhcCC-----cccc-----------------cc----hHHH-HHHHHh---------
Confidence 6889999999999999999888887642 0000 11 1112 333331
Q ss_pred HHHHHhhhHHHH-hhccEEEECCCCCCCeEEEcCCCCCCCCcccceecccccccccccccCCCCCCCCccCCCCCCCccc
Q 047363 720 YRMEKCKVKWQK-LLRRIWALGPRQIGPNILFKPDDKQIDTESSVLVRGSAHVSERLGFVDNSDDGDAAEEIPPGVNRAS 798 (876)
Q Consensus 720 ~~~~~~~~~w~~-~~~~IwafGP~~~g~NiL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 798 (876)
..+++ |+. .+++||||+ ++|+|+ |.+.+..+
T Consensus 523 --~~~~g--~~~~~~~~i~~~~----~~~~f~-------~~~~gg~~--------------------------------- 554 (731)
T PRK07560 523 --LIEAG--MDKDEAKRVWAIY----NGNVFI-------DMTKGIQY--------------------------------- 554 (731)
T ss_pred --hhhcC--Cchhhhhceeecc----CCeEEE-------ECCCCccC---------------------------------
Confidence 11244 875 678899995 789999 65444322
Q ss_pred hhhhhhhHHHHHHHHHHHhcCCCCCCCCcceeEEEEEEEeecc
Q 047363 799 FVEAQSLESSIVSGFQLATASGPLCDEPMWGLAFIVEAYISSN 841 (876)
Q Consensus 799 ~~~~~~~~~siv~GFq~at~~GPLceEp~~gv~f~i~d~~~~~ 841 (876)
+++++++|+.|||||+++||||+|||+||+|.|.|+.+|+
T Consensus 555 ---~~~~~~av~~G~~~a~~~GpL~g~pv~~v~v~l~d~~~h~ 594 (731)
T PRK07560 555 ---LNEVMELIIEGFREAMKEGPLAAEPVRGVKVRLHDAKLHE 594 (731)
T ss_pred ---HHHHHHHHHHHHHHHHhcCCccCCceeeEEEEEEEeeecc
Confidence 5689999999999999999999999999999999999884
No 7
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.7e-90 Score=811.52 Aligned_cols=496 Identities=32% Similarity=0.448 Sum_probs=411.0
Q ss_pred CCCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCcee----eccChhhhhhcceeeeeeEEEEEEcC-eEEEEEc
Q 047363 6 TRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLR----FMDYLDEEQRRAITMKSSSIALHYKD-YAINLID 80 (876)
Q Consensus 6 ~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~----~~d~~~~E~~rgiti~~~~i~~~~~~-~~inlID 80 (876)
.+++|||+|+||+|||||||+++|+++ +|.+++ .|+++ ++|++++|++|||||+++.+++.|++ ++|||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~--tG~i~k--~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlID 82 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFY--TGIISK--IGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLID 82 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHH--cCCcCC--CccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeC
Confidence 689999999999999999999999999 888886 57776 99999999999999999999999995 9999999
Q ss_pred CCCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccccccccChHHHHHHHHHHHHH
Q 047363 81 SPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLISELKLTPLEAYNRLLRIVHE 160 (876)
Q Consensus 81 TPGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~~e~~~~~~~~~~~l~~~l~~ 160 (876)
||||+||..|+.+++|++||||+|||+++|+++||+++|+++.++++|+++|+|||||.++++...+++++.+|...+..
T Consensus 83 TPGHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i~fiNKmDR~~a~~~~~~~~l~~~l~~~~~~ 162 (697)
T COG0480 83 TPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRILFVNKMDRLGADFYLVVEQLKERLGANPVP 162 (697)
T ss_pred CCCccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCCCeEEEEECccccccChhhhHHHHHHHhCCCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998775555
Q ss_pred hhhhhhhccccccccccccccccCcccccccccccccccccccccCCCCcEEEE-eccCCCccchHHHHHHHHHhcCCCH
Q 047363 161 VNGIMSAYKSEKYLSDVDSLLSVPSEKLGDENLQFIEDDEEDTFQPQKGNVAFV-CGLDGWGFSISEFAEFYATKLGAST 239 (876)
Q Consensus 161 vn~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~~gnV~f~-Sa~~Gw~ftl~~fa~~y~~k~~~~~ 239 (876)
+|..+.. .+.| ..+...+..++++|+ ++.+.| +.+. +++.++..
T Consensus 163 v~~pIg~---------------------~~~f-------~g~idl~~~~~~~~~~~~~~~~-~~ip------~~~~~~~~ 207 (697)
T COG0480 163 VQLPIGA---------------------EEEF-------EGVIDLVEMKAVAFGDGAKYEW-IEIP------ADLKEIAE 207 (697)
T ss_pred eeccccC---------------------cccc-------CceeEhhhcCeEEEcCCcccce-eeCC------HHHHhHHH
Confidence 5433322 1122 234455677888898 999999 7776 11111111
Q ss_pred HHHHHhhcccceecCCCcccccccCCCCCCCCCCchhhhhchhHHHHHHHHcCCCCcHHHHHHHHHHcCCCCCHHHHhcc
Q 047363 240 AALEKALWGPRYFNPKTKMIVGKKGISTGTKARPMFVQFVLEPLWQVYQAALEPDGDKGVLEKVIKSFNLSIPRRELQNK 319 (876)
Q Consensus 240 ~~l~k~LWGd~y~~~ktkk~~~~~~~~~~~~~~p~Fv~fiL~pi~~l~~~v~~~d~~~~~l~k~l~~~g~~l~~~~l~~~ 319 (876)
+ + +. ++++++++.|++ ++++|++ |..++..+++..
T Consensus 208 e-----~-------------------------r~-----------~~~e~i~e~de~--l~e~yl~--g~e~~~~~i~~~ 242 (697)
T COG0480 208 E-----A-------------------------RE-----------KLLEALAEFDEE--LMEKYLE--GEEPTEEEIKKA 242 (697)
T ss_pred H-----H-------------------------HH-----------HHHHHHhhcCHH--HHHHHhc--CCCccHHHHHHH
Confidence 1 0 12 344555555533 7777776 666777888877
Q ss_pred ChHHHHHHhhhccccc-------HHHHHHHHhhcCCCcccccchhhhcccccccccCCcccccccchhhhhhhhhcccCC
Q 047363 320 DPKAVLQAVLSHWLPL-------SDAILSMVVKCIPDPISAQSYRISRLLPKREILDNDVDCNVLTEADFVRKSVEVCNS 392 (876)
Q Consensus 320 ~~k~ll~~v~~~~lp~-------~~~lLd~i~~~lPsP~~a~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~cd~ 392 (876)
.++.++...+.+.|++ .++|||+|+++||||.+++..... .+ ++...++.. ++
T Consensus 243 i~~~~~~~~~~pvl~gsa~kn~gv~~lLdav~~~lPsP~e~~~~~g~------------~~-------~~~~~~~~~-~~ 302 (697)
T COG0480 243 LRKGTIAGKIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPPIKGD------------LD-------DEIEKAVLR-KA 302 (697)
T ss_pred HHHhhhccceeeEEeeecccCCcHHHHHHHHHHHCCChhhccccccc------------CC-------ccccchhcc-cC
Confidence 7778777666666655 589999999999999998832211 11 122233333 66
Q ss_pred CCCCCeEEEEEEeeeecccccCCCCCCccccccccCCCCCCCCccceEEEEEEEeCccCCCCEEEEeccccCCcchhhhc
Q 047363 393 SPEAPCVAFVSKMFAVPIKMLPQRGSNGEILDNYADKGGNGESEECFLAFARIFSGVLYSGQRVFVLSALYDPLKVESMQ 472 (876)
Q Consensus 393 ~~~~plv~~V~K~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iaf~RV~SGtL~~G~~v~vlg~~y~~~~~~~~~ 472 (876)
++++|++|+|||+..+|+.. .++|+|||||||++||.|++.+++
T Consensus 303 ~~e~p~~a~vfKi~~d~~~g--------------------------~l~~~RvysGtl~~G~~v~n~~~~---------- 346 (697)
T COG0480 303 SDEGPLSALVFKIMTDPFVG--------------------------KLTFVRVYSGTLKSGSEVLNSTKG---------- 346 (697)
T ss_pred CCCCceEEEEEEeEecCCCC--------------------------eEEEEEEeccEEcCCCEEEeCCCC----------
Confidence 68999999999999987631 488999999999999998665422
Q ss_pred cccceeEEeEEEEecCCceeecceeeCCCeEEEecCCceeeccceecCCCCcccCCCccccCCceeEEEEeeCCCccHHH
Q 047363 473 KHIQEAELQSLYLMMGQGLKPVASAKAGNVVAIRGLGQQILKSATLSSTRNCWPFSSMVFQVSPTLRVAIEPSDPADMGA 552 (876)
Q Consensus 473 ~~~~~~~I~~L~l~~G~~~~~v~~v~AGnIv~I~GL~~~i~k~~Tl~s~~~~~~~~~~~~~~~Pvv~vaIEP~~~~d~~k 552 (876)
++++|++|++|||++++++++++||||+++.||+++ .+|+|+|+.....++.++.|+ +|++++||||++++|++|
T Consensus 347 ---~~erv~~l~~~~~~~~~~v~~~~AG~I~a~~Gl~~~-~tGdTl~~~~~~v~~~~~~~p-ePVi~vavepk~~~d~~K 421 (697)
T COG0480 347 ---KKERVGRLLLMHGNEREEVDEVPAGDIVALVGLKDA-TTGDTLCDENKPVILESMEFP-EPVISVAVEPKTKADQEK 421 (697)
T ss_pred ---ccEEEEEEEEccCCceeecccccCccEEEEEccccc-ccCCeeecCCCccccccccCC-CceEEEEEeECChhhHHH
Confidence 358999999999999999999999999999999995 688999987655788889885 999999999999999999
Q ss_pred HHHHHHHHHhcCCceEEEE-ccCCcEEEEecchhHHHHHHHHHHhhhccceEEEeCCeeeEEecCCCCCCCCcccccccc
Q 047363 553 LMKGLRLLNRADPFVEVSV-SSRGENVLAAAGEVHLERCIKDLKERFAKVSLEVSPPLVSYKETIEGDTSNPLQNVILLS 631 (876)
Q Consensus 553 L~~gL~~L~~~DP~l~v~~-~etGE~vl~g~GElHLe~~l~dL~~~fa~vei~vs~P~V~yrETI~~~~~~~~~~~~~~~ 631 (876)
|.+||++|+++||++.++. +|||||+|+||||||||+|+++|++.| ||++.+++|+|+|||||.+++..
T Consensus 422 l~~aL~~l~~eDPt~~v~~d~Etge~iIsGmGELHLei~~drl~~~~-~Vev~~~~PqV~YrETi~~~~~~--------- 491 (697)
T COG0480 422 LSEALNKLAEEDPTFRVETDEETGETIISGMGELHLEIIVDRLKREF-GVEVEVGKPQVAYRETIRKKSEV--------- 491 (697)
T ss_pred HHHHHHHHHhhCCceEEEEcCCcccEEEEecchhhHHHHHHHHHhhc-CceEEecCCeeEEEEeecccccc---------
Confidence 9999999999999999999 589999999999999999999999988 99999999999999999875421
Q ss_pred CCcceEE---eecCCCceEEEEEeecCChhH
Q 047363 632 GSSDYFE---KTTPNGRCVVRVQVMKLPFTV 659 (876)
Q Consensus 632 ~~~~~~~---~~t~n~~~~i~v~a~PLp~~v 659 (876)
.... ...+|+++++++++||++++.
T Consensus 492 ---~~~~~kqsgg~~q~~~v~i~~EP~~~~~ 519 (697)
T COG0480 492 ---EGKHKKQSGGPGQYGHVYIEIEPLEDGS 519 (697)
T ss_pred ---eeeeeeccCCCCcccEEEEEEEeCCCCc
Confidence 1111 357788899999999999863
No 8
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=100.00 E-value=5.1e-88 Score=816.42 Aligned_cols=571 Identities=32% Similarity=0.542 Sum_probs=469.3
Q ss_pred CCCCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEE----EEEcCeEEEEEc
Q 047363 5 DTRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIA----LHYKDYAINLID 80 (876)
Q Consensus 5 ~~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~----~~~~~~~inlID 80 (876)
+++++|||+|+||.|||||||+++|++. +|.+++...|..+++|+.++|++||+|+.++.++ +.|.++.+||||
T Consensus 15 ~~~~irnI~ivGh~~~GKTTL~~~ll~~--~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liD 92 (720)
T TIGR00490 15 KPKFIRNIGIVAHIDHGKTTLSDNLLAG--AGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLID 92 (720)
T ss_pred CcccccEEEEEEeCCCCHHHHHHHHHHH--cCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEe
Confidence 5678999999999999999999999999 8888877777788999999999999999988776 556789999999
Q ss_pred CCCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccccccccChHHHHHHHHHHHHH
Q 047363 81 SPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLISELKLTPLEAYNRLLRIVHE 160 (876)
Q Consensus 81 TPGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~~e~~~~~~~~~~~l~~~l~~ 160 (876)
||||.+|..++..+++.+|++|+|+|+.+|+..+++.+|+++...++|+++|+||+|+..++++.++++++.++...+..
T Consensus 93 TPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~~~~~~~~~~~~ 172 (720)
T TIGR00490 93 TPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVKPVLFINKVDRLINELKLTPQELQERFIKIITE 172 (720)
T ss_pred CCCccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHcCCCEEEEEEChhcccchhcCCHHHHHHHHhhhhHH
Confidence 99999999999999999999999999999999999999999989999999999999999999999999999999999998
Q ss_pred hhhhhhhccccccccccccccccCcccccccccccccccccccccCCCCcEEEEeccCCCccchHHHHHHHHHhcCCCHH
Q 047363 161 VNGIMSAYKSEKYLSDVDSLLSVPSEKLGDENLQFIEDDEEDTFQPQKGNVAFVCGLDGWGFSISEFAEFYATKLGASTA 240 (876)
Q Consensus 161 vn~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~~gnV~f~Sa~~Gw~ftl~~fa~~y~~k~~~~~~ 240 (876)
++.++..... +++. ..+.++|..||+.|+|++.+|+|++.+|.+. +++
T Consensus 173 v~~~~~~~~~-------------------~~~~------~~~~~~~~~~~~~f~s~~~~~~~~~~~~~~~-----~~~-- 220 (720)
T TIGR00490 173 VNKLIKAMAP-------------------EEFR------DKWKVRVEDGSVAFGSAYYNWAISVPSMKKT-----GIG-- 220 (720)
T ss_pred HHhhhhccCC-------------------HHHh------hceEechhhCCHHHHhhhhcccccchhHhhc-----CCC--
Confidence 8877643210 0000 2356899999999999999999999876332 111
Q ss_pred HHHHhhcccceecCCCcccccccCCCCCCCCCCchhhhhchhHHHHHHHHcCCCCcHHHHHHHHHHcCCCCCHHHHhccC
Q 047363 241 ALEKALWGPRYFNPKTKMIVGKKGISTGTKARPMFVQFVLEPLWQVYQAALEPDGDKGVLEKVIKSFNLSIPRRELQNKD 320 (876)
Q Consensus 241 ~l~k~LWGd~y~~~ktkk~~~~~~~~~~~~~~p~Fv~fiL~pi~~l~~~v~~~d~~~~~l~k~l~~~g~~l~~~~l~~~~ 320 (876)
| ++||+++.... .++
T Consensus 221 ----------------------------------~--------~~l~~~~~~~~------------------~~~----- 235 (720)
T TIGR00490 221 ----------------------------------F--------KDIYKYCKEDK------------------QKE----- 235 (720)
T ss_pred ----------------------------------H--------HHHHHHHHhcc------------------HHH-----
Confidence 1 12233221110 011
Q ss_pred hHHHHHHhhhcccccHHHHHHHHhhcCCCcccccchhhhcccccccccCCcccccccchhhhhhhhhcccCCCCCCCeEE
Q 047363 321 PKAVLQAVLSHWLPLSDAILSMVVKCIPDPISAQSYRISRLLPKREILDNDVDCNVLTEADFVRKSVEVCNSSPEAPCVA 400 (876)
Q Consensus 321 ~k~ll~~v~~~~lp~~~~lLd~i~~~lPsP~~a~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~cd~~~~~plv~ 400 (876)
+.+|+|+.++|||+|++++|||.++++.|++.++.+ ..+ ++...++..|+ +++|+++
T Consensus 236 --------~~~~~Pv~~~Lld~i~~~lPsP~~~~~~~~~~~~~~------~~~-------~~~~~~~~~~d--~~~pl~a 292 (720)
T TIGR00490 236 --------LAKKSPLHQVVLDMVIRHLPSPIEAQKYRIPVIWKG------DLN-------SEVGKAMLNCD--PKGPLAL 292 (720)
T ss_pred --------HhhhhhHHHHHHHHHHHhCCChhhhhhhcccccccC------CCC-------ccchhhcccCC--CCCCeEE
Confidence 224899999999999999999999988888776631 000 12234567898 8899999
Q ss_pred EEEEeeeecccccCCCCCCccccccccCCCCCCCCccceEEEEEEEeCccCCCCEEEEeccccCCcchhhhccccceeEE
Q 047363 401 FVSKMFAVPIKMLPQRGSNGEILDNYADKGGNGESEECFLAFARIFSGVLYSGQRVFVLSALYDPLKVESMQKHIQEAEL 480 (876)
Q Consensus 401 ~V~K~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iaf~RV~SGtL~~G~~v~vlg~~y~~~~~~~~~~~~~~~~I 480 (876)
+|||+.++++. ..++|+|||||+|++||.|++.+++ ..++|
T Consensus 293 ~VfK~~~~~~~--------------------------G~ia~~RV~sGtL~~G~~l~~~~~~-------------~~~kv 333 (720)
T TIGR00490 293 MITKIVVDKHA--------------------------GEVAVGRLYSGTIRPGMEVYIVDRK-------------AKARI 333 (720)
T ss_pred EEEEEEecCCC--------------------------cEEEEEEEEeCEEcCCCEEEEcCCC-------------CeeEe
Confidence 99999977642 1599999999999999999987644 23789
Q ss_pred eEEEEecCCceeecceeeCCCeEEEecCCceeeccceecCCCC-cccCCCccccCCceeEEEEeeCCCccHHHHHHHHHH
Q 047363 481 QSLYLMMGQGLKPVASAKAGNVVAIRGLGQQILKSATLSSTRN-CWPFSSMVFQVSPTLRVAIEPSDPADMGALMKGLRL 559 (876)
Q Consensus 481 ~~L~l~~G~~~~~v~~v~AGnIv~I~GL~~~i~k~~Tl~s~~~-~~~~~~~~~~~~Pvv~vaIEP~~~~d~~kL~~gL~~ 559 (876)
++||+++|++.+++++++|||||+|.|+++. .+|+||++... +.+|.++.+.++|+++++|||.+++|.+||.+||++
T Consensus 334 ~~l~~~~g~~~~~v~~a~aGdIv~i~gl~~~-~~GdtL~~~~~~~~~~~~~~~~~~Pv~~~~i~p~~~~d~~kL~~aL~~ 412 (720)
T TIGR00490 334 QQVGVYMGPERVEVDEIPAGNIVAVIGLKDA-VAGETICTTVENITPFESIKHISEPVVTVAIEAKNTKDLPKLIEVLRQ 412 (720)
T ss_pred eEEEEeccCCccCccEECCCCEEEEECcccc-ccCceeecCCcccccCcccccCCCceEEEEEEECCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999874 68999987653 455677765679999999999999999999999999
Q ss_pred HHhcCCceEEEEc-cCCcEEEEecchhHHHHHHHHHHhhhccceEEEeCCeeeEEecCCCCCCCCccccccccCCcceEE
Q 047363 560 LNRADPFVEVSVS-SRGENVLAAAGEVHLERCIKDLKERFAKVSLEVSPPLVSYKETIEGDTSNPLQNVILLSGSSDYFE 638 (876)
Q Consensus 560 L~~~DP~l~v~~~-etGE~vl~g~GElHLe~~l~dL~~~fa~vei~vs~P~V~yrETI~~~~~~~~~~~~~~~~~~~~~~ 638 (876)
|+++||++.+.++ ||||++|+|+||+|||+|+++|+++| +|+|++++|.|+|||||.+.+. .++
T Consensus 413 L~~eDPsl~v~~d~etge~il~g~GElHLei~~~rL~~~~-~vev~~~~P~V~YrETi~~~~~--------------~~~ 477 (720)
T TIGR00490 413 VAKEDPTVHVEINEETGEHLISGMGELHLEIIVEKIREDY-GLDVETSPPIVVYRETVTGTSP--------------VVE 477 (720)
T ss_pred HHhhCCeEEEEECCCCCCeEEEEccceeHHHHHHHHHHHh-CCceeecCCEEEEEEecccccc--------------ceE
Confidence 9999999999995 89999999999999999999999999 9999999999999999987531 133
Q ss_pred eecCCCceEEEEEeecCChhHHHHHHhhhhhhhhhhccCCCcccccccCCCCCCCChHHHHHHHHHHHHHhhhhcCCCch
Q 047363 639 KTTPNGRCVVRVQVMKLPFTVTKVLDECADLLGIIIGGQANKSLETQRSSSGEDDNPIEALRKRIMDAVEDHISAGNEND 718 (876)
Q Consensus 639 ~~t~n~~~~i~v~a~PLp~~v~~~le~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 718 (876)
.+++|++++++++++|||+++.++++.+. +..+ . .. ++.+...|.
T Consensus 478 ~~~~~~~~~v~l~iePl~~~~~~~i~~~~--~~~~---~----------------~~----~~~~~~~~~---------- 522 (720)
T TIGR00490 478 GKSPNKHNRFYIVVEPLEESVIQAFKEGK--IVDM---K----------------MK----KKERRRLLI---------- 522 (720)
T ss_pred EEcCCCcEEEEEEEEECCcchhhhhhccc--cccc---c----------------cc----hHHHHHHHH----------
Confidence 45688999999999999999988888641 1000 0 00 122222221
Q ss_pred HHHHHHhhhHHHH-hhccEEEECCCCCCCeEEEcCCCCCCCCcccceecccccccccccccCCCCCCCCccCCCCCCCcc
Q 047363 719 QYRMEKCKVKWQK-LLRRIWALGPRQIGPNILFKPDDKQIDTESSVLVRGSAHVSERLGFVDNSDDGDAAEEIPPGVNRA 797 (876)
Q Consensus 719 ~~~~~~~~~~w~~-~~~~IwafGP~~~g~NiL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 797 (876)
+++ |+. .+++||||| ++|+|+ |.+.+..+
T Consensus 523 -----~~~--~~~~~~~~i~~~~----~~~~f~-------~~~~gg~i-------------------------------- 552 (720)
T TIGR00490 523 -----EAG--MDSEEAARVEEYY----EGNLFI-------NMTRGIQY-------------------------------- 552 (720)
T ss_pred -----hcC--CchhhhcCEEEec----CCeEEE-------ECCCCCCC--------------------------------
Confidence 244 886 578899998 589999 65444322
Q ss_pred chhhhhhhHHHHHHHHHHHhcCCCCCCCCcceeEEEEEEEeecc
Q 047363 798 SFVEAQSLESSIVSGFQLATASGPLCDEPMWGLAFIVEAYISSN 841 (876)
Q Consensus 798 ~~~~~~~~~~siv~GFq~at~~GPLceEp~~gv~f~i~d~~~~~ 841 (876)
.++|++||..|||||+++||||+|||+||+|.|.|+..|+
T Consensus 553 ----~~~~~~av~~G~~~a~~~GpL~g~pv~~v~v~l~d~~~h~ 592 (720)
T TIGR00490 553 ----LDETKELILEGFREAMRNGPIAREKCMGVKVKLMDAKLHE 592 (720)
T ss_pred ----HHHHHHHHHHHHHHHHHcCCcCCCcccceEEEEEeecccc
Confidence 5689999999999999999999999999999999998884
No 9
>PRK12739 elongation factor G; Reviewed
Probab=100.00 E-value=6e-82 Score=761.81 Aligned_cols=474 Identities=27% Similarity=0.405 Sum_probs=382.9
Q ss_pred CCCCCCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccc--cCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEc
Q 047363 3 DSDTRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPK--LAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLID 80 (876)
Q Consensus 3 ~~~~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~--~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlID 80 (876)
...+++||||+|+||+|||||||+++|++. +|.+... ..+..+++|+.+.|++||+|++++.+++.|+++.++|||
T Consensus 2 ~~~~~~irni~iiGh~~~GKsTL~~~ll~~--~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liD 79 (691)
T PRK12739 2 EFPLEKTRNIGIMAHIDAGKTTTTERILYY--TGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIID 79 (691)
T ss_pred CCCccCeeEEEEECCCCCCHHHHHHHHHHh--CCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEc
Confidence 456789999999999999999999999998 6655432 122357899999999999999999999999999999999
Q ss_pred CCCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccccccccChHHHHHHHHHHHHH
Q 047363 81 SPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLISELKLTPLEAYNRLLRIVHE 160 (876)
Q Consensus 81 TPGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~~e~~~~~~~~~~~l~~~l~~ 160 (876)
||||.+|..++.++++.+|+||+|||+.+|+..|++.+|+++.+.++|+|+|+||+|+..+++ .+ .+++
T Consensus 80 TPG~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~iv~iNK~D~~~~~~----~~-------~~~~ 148 (691)
T PRK12739 80 TPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRIGADF----FR-------SVEQ 148 (691)
T ss_pred CCCHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCH----HH-------HHHH
Confidence 999999999999999999999999999999999999999999999999999999999996542 22 2222
Q ss_pred hhhhhhhccccccccccccccccCcccccccccccccccccccccCCCCcEEEEeccCCCccchHHHHHHHHHhcCCCHH
Q 047363 161 VNGIMSAYKSEKYLSDVDSLLSVPSEKLGDENLQFIEDDEEDTFQPQKGNVAFVCGLDGWGFSISEFAEFYATKLGASTA 240 (876)
Q Consensus 161 vn~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~~gnV~f~Sa~~Gw~ftl~~fa~~y~~k~~~~~~ 240 (876)
++..+... .....+ |. |+..++. -.++..
T Consensus 149 i~~~l~~~---~~~~~i------Pi-----------------------------s~~~~f~-------------g~vd~~ 177 (691)
T PRK12739 149 IKDRLGAN---AVPIQL------PI-----------------------------GAEDDFK-------------GVIDLI 177 (691)
T ss_pred HHHHhCCC---ceeEEe------cc-----------------------------cccccce-------------EEEEcc
Confidence 22221110 000000 11 1111111 012333
Q ss_pred HHHHhhcccceecCCCcccccccCCCCCCCCCCchhhhhchhHHHHHHHHcCCCCcHHHHHHHHHHcCCCCCHHHHhccC
Q 047363 241 ALEKALWGPRYFNPKTKMIVGKKGISTGTKARPMFVQFVLEPLWQVYQAALEPDGDKGVLEKVIKSFNLSIPRRELQNKD 320 (876)
Q Consensus 241 ~l~k~LWGd~y~~~ktkk~~~~~~~~~~~~~~p~Fv~fiL~pi~~l~~~v~~~d~~~~~l~k~l~~~g~~l~~~~l~~~~ 320 (876)
.+...+||+..+. +++... .. ...+.++++++++++++++++.|++ +|++|++ +..++.+++++..
T Consensus 178 ~~~~~~~~~~~~~---~~~~~~------~~-~~~~~~~~~~~~~~l~e~v~e~dd~--lle~yl~--~~~~~~~~l~~~l 243 (691)
T PRK12739 178 KMKAIIWDDETLG---AKYEEE------DI-PADLKEKAEEYREKLIEAVAEVDEE--LMEKYLE--GEEITEEEIKAAI 243 (691)
T ss_pred hhhhhhccCCCCC---CeeEEc------CC-CHHHHHHHHHHHHHHHHhhhhcCHH--HHHHHhc--cCCCCHHHHHHHH
Confidence 4566789886222 222111 11 2367899999999999999999877 9999997 5678889988877
Q ss_pred hHHHHHHhhhccccc----------HHHHHHHHhhcCCCcccccchhhhcccccccccCCcccccccchhhhhhhhhccc
Q 047363 321 PKAVLQAVLSHWLPL----------SDAILSMVVKCIPDPISAQSYRISRLLPKREILDNDVDCNVLTEADFVRKSVEVC 390 (876)
Q Consensus 321 ~k~ll~~v~~~~lp~----------~~~lLd~i~~~lPsP~~a~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~c 390 (876)
.+.+++ .+|+|+ .+.|||+|++++|||.+++..+...+.. . ..++..|
T Consensus 244 ~~~~~~---~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~------------------~-~~~~~~~ 301 (691)
T PRK12739 244 RKATIN---MEFFPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPAIKGINPDT------------------E-EEIERPA 301 (691)
T ss_pred HHHHHc---CCEEEEEeccccCCccHHHHHHHHHHHCCChhhccccccccCCC------------------C-cceeecc
Confidence 777665 466776 5899999999999999877655432210 1 2346789
Q ss_pred CCCCCCCeEEEEEEeeeecccccCCCCCCccccccccCCCCCCCCccceEEEEEEEeCccCCCCEEEEeccccCCcchhh
Q 047363 391 NSSPEAPCVAFVSKMFAVPIKMLPQRGSNGEILDNYADKGGNGESEECFLAFARIFSGVLYSGQRVFVLSALYDPLKVES 470 (876)
Q Consensus 391 d~~~~~plv~~V~K~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iaf~RV~SGtL~~G~~v~vlg~~y~~~~~~~ 470 (876)
+ +++|+++||||++++++.. .++|+|||||+|++||.|++. +.+
T Consensus 302 ~--~~~pl~a~VfK~~~d~~~G--------------------------~i~~~RV~sGtL~~g~~v~~~------~~~-- 345 (691)
T PRK12739 302 S--DDEPFAALAFKIMTDPFVG--------------------------RLTFFRVYSGVLESGSYVLNT------TKG-- 345 (691)
T ss_pred C--CCCCeEEEEEEeeeCCCCC--------------------------eEEEEEEeeeEEcCCCEEEeC------CCC--
Confidence 8 8899999999999887621 499999999999999998642 211
Q ss_pred hccccceeEEeEEEEecCCceeecceeeCCCeEEEecCCceeeccceecCCCCcccCCCccccCCceeEEEEeeCCCccH
Q 047363 471 MQKHIQEAELQSLYLMMGQGLKPVASAKAGNVVAIRGLGQQILKSATLSSTRNCWPFSSMVFQVSPTLRVAIEPSDPADM 550 (876)
Q Consensus 471 ~~~~~~~~~I~~L~l~~G~~~~~v~~v~AGnIv~I~GL~~~i~k~~Tl~s~~~~~~~~~~~~~~~Pvv~vaIEP~~~~d~ 550 (876)
++++|++||.++|++..++++++|||||+|.|+++ +.+|+||++...+..++++.+ +.|+++++|||.+++|+
T Consensus 346 -----~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~-~~~gdtl~~~~~~~~l~~~~~-~~Pv~~~aiep~~~~d~ 418 (691)
T PRK12739 346 -----KKERIGRLLQMHANKREEIKEVYAGDIAAAVGLKD-TTTGDTLCDEKAPIILESMEF-PEPVISLAVEPKTKADQ 418 (691)
T ss_pred -----ceEEecceEEEecCCcccccccCCCCEEEEeCCCc-ccCCCEEeCCCCccccCCCCC-CCceEEEEEEECCcccH
Confidence 34789999999999999999999999999999998 578999988777778888877 69999999999999999
Q ss_pred HHHHHHHHHHHhcCCceEEEEc-cCCcEEEEecchhHHHHHHHHHHhhhccceEEEeCCeeeEEecCCCCC
Q 047363 551 GALMKGLRLLNRADPFVEVSVS-SRGENVLAAAGEVHLERCIKDLKERFAKVSLEVSPPLVSYKETIEGDT 620 (876)
Q Consensus 551 ~kL~~gL~~L~~~DP~l~v~~~-etGE~vl~g~GElHLe~~l~dL~~~fa~vei~vs~P~V~yrETI~~~~ 620 (876)
+||.+||++|.++||+++|.++ ||||++|.|+||||||+|++||+++| +++|++|+|.|+|||||.+++
T Consensus 419 ~kL~~aL~~L~~eDpsl~v~~~~etge~il~g~GelHLei~~~rL~~~f-~vev~~s~p~V~yrEti~~~~ 488 (691)
T PRK12739 419 DKMGLALQKLAEEDPTFRVETDEETGQTIISGMGELHLDIIVDRMKREF-KVEANVGAPQVAYRETITKSV 488 (691)
T ss_pred HHHHHHHHHHHHhCCeEEEEEcCCCCCEEEEEecHHHHHHHHHHHHHHh-CCeeEecCCEEEEeeccCCcc
Confidence 9999999999999999999995 79999999999999999999999999 999999999999999997653
No 10
>PRK00007 elongation factor G; Reviewed
Probab=100.00 E-value=2.2e-81 Score=756.44 Aligned_cols=504 Identities=26% Similarity=0.365 Sum_probs=392.9
Q ss_pred CCCCCCCCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccc--cCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEE
Q 047363 1 MGDSDTRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPK--LAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINL 78 (876)
Q Consensus 1 m~~~~~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~--~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inl 78 (876)
|..+.+++||||+|+||+|||||||+++|++. +|.+... ..+..+++|+.+.|++||+|++++.+++.|+++.+||
T Consensus 2 ~~~~~~~~Irni~iiG~~~~GKsTL~~~ll~~--~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~l 79 (693)
T PRK00007 2 ARETPLERYRNIGIMAHIDAGKTTTTERILFY--TGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINI 79 (693)
T ss_pred CCcCcccceeEEEEECCCCCCHHHHHHHHHHh--cCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEE
Confidence 56677899999999999999999999999998 6665432 1234579999999999999999999999999999999
Q ss_pred EcCCCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccccccccChHHHHHHHHHHH
Q 047363 79 IDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLISELKLTPLEAYNRLLRIV 158 (876)
Q Consensus 79 IDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~~e~~~~~~~~~~~l~~~l 158 (876)
||||||.+|..++.++++.+|+||+|||+.+|++.|++.+|+++.+.++|+|+|+||+|+..+++ .+....++..+
T Consensus 80 iDTPG~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~~~~~----~~~~~~i~~~l 155 (693)
T PRK00007 80 IDTPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRIAFVNKMDRTGADF----YRVVEQIKDRL 155 (693)
T ss_pred EeCCCcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCCCCCCH----HHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999997552 22222222221
Q ss_pred HHhhhhhhhccccccccccccccccCcccccccccccccccccccccCCCCcEEEEeccCCCccchHHHHHHHHHhcCCC
Q 047363 159 HEVNGIMSAYKSEKYLSDVDSLLSVPSEKLGDENLQFIEDDEEDTFQPQKGNVAFVCGLDGWGFSISEFAEFYATKLGAS 238 (876)
Q Consensus 159 ~~vn~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~~gnV~f~Sa~~Gw~ftl~~fa~~y~~k~~~~ 238 (876)
+..... -+++.|+..|+.= -++
T Consensus 156 ---~~~~~~------------------------------------------~~ipisa~~~f~g-------------~~d 177 (693)
T PRK00007 156 ---GANPVP------------------------------------------IQLPIGAEDDFKG-------------VVD 177 (693)
T ss_pred ---CCCeee------------------------------------------EEecCccCCcceE-------------EEE
Confidence 110000 0011122222100 011
Q ss_pred HHHHHHhhcccceecCCCcccccccCCCCCCCCCCchhhhhchhHHHHHHHHcCCCCcHHHHHHHHHHcCCCCCHHHHhc
Q 047363 239 TAALEKALWGPRYFNPKTKMIVGKKGISTGTKARPMFVQFVLEPLWQVYQAALEPDGDKGVLEKVIKSFNLSIPRRELQN 318 (876)
Q Consensus 239 ~~~l~k~LWGd~y~~~ktkk~~~~~~~~~~~~~~p~Fv~fiL~pi~~l~~~v~~~d~~~~~l~k~l~~~g~~l~~~~l~~ 318 (876)
.-.+...+||+.. .++++... .. .....+++.++++++.+++++.|++ +|++|++ |..++++++++
T Consensus 178 ~~~~~~~~~~~~~---~~~~~~~~------~~-~~~~~~~~~~~~~~l~e~v~e~dd~--lle~yle--~~~l~~~~l~~ 243 (693)
T PRK00007 178 LVKMKAIIWNEAD---LGATFEYE------EI-PADLKDKAEEYREKLIEAAAEADEE--LMEKYLE--GEELTEEEIKA 243 (693)
T ss_pred cceeeeeecccCC---CCCcceEc------cC-CHHHHHHHHHHHHHHHHHHHccCHH--HHHHHhC--cCCCCHHHHHH
Confidence 1224456787422 22222211 11 2246678999999999999999877 9999998 78999999988
Q ss_pred cChHHHHHHhhhcccccH----------HHHHHHHhhcCCCcccccchhhhcccccccccCCcccccccchhhhhhhhhc
Q 047363 319 KDPKAVLQAVLSHWLPLS----------DAILSMVVKCIPDPISAQSYRISRLLPKREILDNDVDCNVLTEADFVRKSVE 388 (876)
Q Consensus 319 ~~~k~ll~~v~~~~lp~~----------~~lLd~i~~~lPsP~~a~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (876)
...+.++. .+|+|+. +.|||+|++++|||.+++..+... . .+.......
T Consensus 244 ~l~~~~~~---~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~--------~----------~~~~~~~~~ 302 (693)
T PRK00007 244 ALRKATIA---NEIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPAIKGIL--------P----------DGEEEEVER 302 (693)
T ss_pred HHHHHHhc---CcEEEEEecccccCcCHHHHHHHHHHHCCChhhcccccccC--------C----------Cccccceee
Confidence 66666664 4667763 899999999999998765432100 0 011233457
Q ss_pred ccCCCCCCCeEEEEEEeeeecccccCCCCCCccccccccCCCCCCCCccceEEEEEEEeCccCCCCEEEEeccccCCcch
Q 047363 389 VCNSSPEAPCVAFVSKMFAVPIKMLPQRGSNGEILDNYADKGGNGESEECFLAFARIFSGVLYSGQRVFVLSALYDPLKV 468 (876)
Q Consensus 389 ~cd~~~~~plv~~V~K~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iaf~RV~SGtL~~G~~v~vlg~~y~~~~~ 468 (876)
.|| +++|+++||||++++++.. .++|+|||||+|++||+|++. +.+
T Consensus 303 ~~~--~~~~l~a~VfK~~~d~~~G--------------------------~ia~~RV~sGtl~~g~~v~~~------~~~ 348 (693)
T PRK00007 303 KAS--DDEPFSALAFKIMTDPFVG--------------------------KLTFFRVYSGVLESGSYVLNS------TKG 348 (693)
T ss_pred cCC--CCCCeEEEEEEeeecCCCC--------------------------cEEEEEEeeeEEcCCCEEEeC------CCC
Confidence 898 8899999999999887621 499999999999999999642 111
Q ss_pred hhhccccceeEEeEEEEecCCceeecceeeCCCeEEEecCCceeeccceecCCCCcccCCCccccCCceeEEEEeeCCCc
Q 047363 469 ESMQKHIQEAELQSLYLMMGQGLKPVASAKAGNVVAIRGLGQQILKSATLSSTRNCWPFSSMVFQVSPTLRVAIEPSDPA 548 (876)
Q Consensus 469 ~~~~~~~~~~~I~~L~l~~G~~~~~v~~v~AGnIv~I~GL~~~i~k~~Tl~s~~~~~~~~~~~~~~~Pvv~vaIEP~~~~ 548 (876)
+.++|++||.++|++..+|++++|||||+|.|+++ +.+|+||++...+..+.++.+ +.|+++++|||.+++
T Consensus 349 -------~~eki~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~-~~~GdtL~~~~~~~~l~~~~~-~~Pv~~~aIep~~~~ 419 (693)
T PRK00007 349 -------KKERIGRILQMHANKREEIKEVRAGDIAAAVGLKD-TTTGDTLCDEKNPIILESMEF-PEPVISVAVEPKTKA 419 (693)
T ss_pred -------ceeEeceeEEeccCCcccccccCCCcEEEEeCCcc-CCcCCEeeCCCCccccCCCCC-CCceEEEEEEECCcc
Confidence 34799999999999999999999999999999988 478999988776777878776 699999999999999
Q ss_pred cHHHHHHHHHHHHhcCCceEEEEc-cCCcEEEEecchhHHHHHHHHHHhhhccceEEEeCCeeeEEecCCCCCCCCcccc
Q 047363 549 DMGALMKGLRLLNRADPFVEVSVS-SRGENVLAAAGEVHLERCIKDLKERFAKVSLEVSPPLVSYKETIEGDTSNPLQNV 627 (876)
Q Consensus 549 d~~kL~~gL~~L~~~DP~l~v~~~-etGE~vl~g~GElHLe~~l~dL~~~fa~vei~vs~P~V~yrETI~~~~~~~~~~~ 627 (876)
|.+||.+||++|.++||+++|.++ ||||++|.|+||||||+|++||+++| ++++++|+|+|+|||||.+++..
T Consensus 420 d~~kL~~aL~~L~~eDpsl~v~~~~etge~~l~g~GelHLei~~~rL~~~~-~vev~~s~p~V~yrETi~~~~~~----- 493 (693)
T PRK00007 420 DQEKMGIALQKLAEEDPSFRVSTDEETGQTIIAGMGELHLDIIVDRMKREF-KVEANVGKPQVAYRETIRKKVEV----- 493 (693)
T ss_pred cHHHHHHHHHHHHHhCCeEEEEEcCCCCCEEEEEecHHhHHHHHHHHHHHh-CCeeEecCCEEEEeecccCcccc-----
Confidence 999999999999999999999995 79999999999999999999999999 99999999999999999775421
Q ss_pred ccccCCcceEEeecC--CCceEEEEEeecCChh
Q 047363 628 ILLSGSSDYFEKTTP--NGRCVVRVQVMKLPFT 658 (876)
Q Consensus 628 ~~~~~~~~~~~~~t~--n~~~~i~v~a~PLp~~ 658 (876)
.+.....+. +....++++++|++.+
T Consensus 494 ------~~~~~~~~gg~~~~~~v~l~~eP~~~~ 520 (693)
T PRK00007 494 ------EGKFVKQSGGRGQYGHVVIEFEPNEPG 520 (693)
T ss_pred ------CcccccccCCCCceEEEEEEEEeCCCC
Confidence 111111111 1236888889988653
No 11
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=100.00 E-value=2.4e-78 Score=730.93 Aligned_cols=504 Identities=26% Similarity=0.362 Sum_probs=389.8
Q ss_pred CCCCCCCCceEEEEEeCCCCcHHHHHHHHHHhhCCCCccccc--CCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEE
Q 047363 1 MGDSDTRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKL--AGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINL 78 (876)
Q Consensus 1 m~~~~~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~--~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inl 78 (876)
|.++.+++||||+|+||+|||||||+++|++. +|.+.... ....+++|+.+.|++||+|+++...++.|+++.++|
T Consensus 2 ~~~~~~~~irni~iiG~~~~GKsTL~~~ll~~--~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~l 79 (689)
T TIGR00484 2 ARTTDLNRFRNIGISAHIDAGKTTTTERILFY--TGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINI 79 (689)
T ss_pred CCcCccccccEEEEECCCCCCHHHHHHHHHHh--CCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEE
Confidence 56788999999999999999999999999998 77664321 122378999999999999999999999999999999
Q ss_pred EcCCCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccccccccChHHHHHHHHHHH
Q 047363 79 IDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLISELKLTPLEAYNRLLRIV 158 (876)
Q Consensus 79 IDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~~e~~~~~~~~~~~l~~~l 158 (876)
||||||.+|..++..+++.+|++|+|||+.+|+..+++.+|+++.+.++|+++|+||+|+..+++ .+..+.+...+
T Consensus 80 iDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~----~~~~~~i~~~l 155 (689)
T TIGR00484 80 IDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRIAFVNKMDKTGANF----LRVVNQIKQRL 155 (689)
T ss_pred EECCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEEEEEECCCCCCCCH----HHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999987652 22222222221
Q ss_pred HHhhhhhhhccccccccccccccccCcccccccccccccccccccccCCCCcEEEEeccCCCccchHHHHHHHHHhcCCC
Q 047363 159 HEVNGIMSAYKSEKYLSDVDSLLSVPSEKLGDENLQFIEDDEEDTFQPQKGNVAFVCGLDGWGFSISEFAEFYATKLGAS 238 (876)
Q Consensus 159 ~~vn~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~~gnV~f~Sa~~Gw~ftl~~fa~~y~~k~~~~ 238 (876)
. .+.+. ..+ |.+... .+.++++... .
T Consensus 156 ~-~~~~~---------~~i------pis~~~-~~~~~id~~~--------~----------------------------- 181 (689)
T TIGR00484 156 G-ANAVP---------IQL------PIGAED-NFIGVIDLVE--------M----------------------------- 181 (689)
T ss_pred C-CCcee---------EEe------ccccCC-CceEEEECcc--------c-----------------------------
Confidence 1 00000 000 111111 1111111100 0
Q ss_pred HHHHHHhhcccceecCCCcccccccCCCCCCCCCCchhhhhchhHHHHHHHHcCCCCcHHHHHHHHHHcCCCCCHHHHhc
Q 047363 239 TAALEKALWGPRYFNPKTKMIVGKKGISTGTKARPMFVQFVLEPLWQVYQAALEPDGDKGVLEKVIKSFNLSIPRRELQN 318 (876)
Q Consensus 239 ~~~l~k~LWGd~y~~~ktkk~~~~~~~~~~~~~~p~Fv~fiL~pi~~l~~~v~~~d~~~~~l~k~l~~~g~~l~~~~l~~ 318 (876)
+.+||++..+.-.. .... ...+.++++++.+++++++++.|++ +|++|++ |..++.++++.
T Consensus 182 ---------~~~~~~~~~~~~~~-----~~~~-~~~~~~~~~~~~~~l~e~v~e~dd~--lle~yle--~~~~~~~~l~~ 242 (689)
T TIGR00484 182 ---------KAYFFNGDKGTKAI-----EKEI-PSDLLEQAKELRENLVEAVAEFDEE--LMEKYLE--GEELTIEEIKN 242 (689)
T ss_pred ---------eEEecccCCCceee-----eccC-CHHHHHHHHHHHHHHHHHHHhcCHH--HHHHHhC--CCCCCHHHHHH
Confidence 12344432211000 0011 2357788999999999999999877 9999998 77899999887
Q ss_pred cChHHHHHHhhhcccccH-------HHHHHHHhhcCCCcccccchhhhcccccccccCCcccccccchhhhhhhhhcccC
Q 047363 319 KDPKAVLQAVLSHWLPLS-------DAILSMVVKCIPDPISAQSYRISRLLPKREILDNDVDCNVLTEADFVRKSVEVCN 391 (876)
Q Consensus 319 ~~~k~ll~~v~~~~lp~~-------~~lLd~i~~~lPsP~~a~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~cd 391 (876)
...+.++...+.++|.++ ++|||+|++++|||.+++..+.... + ....+...|+
T Consensus 243 ~l~~~~~~~~~~PV~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~-----------~--------~~~~~~~~~~ 303 (689)
T TIGR00484 243 AIRKGVLNCEFFPVLCGSAFKNKGVQLLLDAVVDYLPSPTDVPAIKGIDP-----------D--------TEKEIERKAS 303 (689)
T ss_pred HHHHHHhcCCEEEEEeccccCCccHHHHHHHHHHHCCCchhcccccccCC-----------C--------CCceeeecCC
Confidence 777777665554554443 9999999999999987654332110 0 1122357888
Q ss_pred CCCCCCeEEEEEEeeeecccccCCCCCCccccccccCCCCCCCCccceEEEEEEEeCccCCCCEEEEeccccCCcchhhh
Q 047363 392 SSPEAPCVAFVSKMFAVPIKMLPQRGSNGEILDNYADKGGNGESEECFLAFARIFSGVLYSGQRVFVLSALYDPLKVESM 471 (876)
Q Consensus 392 ~~~~~plv~~V~K~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iaf~RV~SGtL~~G~~v~vlg~~y~~~~~~~~ 471 (876)
+++|++|||||+.++++. .+++|+|||||+|++||+|++.. .+
T Consensus 304 --~~~~l~a~VfK~~~d~~~--------------------------G~i~~~RV~sGtL~~g~~v~~~~------~~--- 346 (689)
T TIGR00484 304 --DDEPFSALAFKVATDPFV--------------------------GQLTFVRVYSGVLKSGSYVKNSR------KN--- 346 (689)
T ss_pred --CCCceEEEEEEeeecCCC--------------------------CeEEEEEEEEeEEcCCCEEEeCC------CC---
Confidence 889999999999988763 15999999999999999997532 11
Q ss_pred ccccceeEEeEEEEecCCceeecceeeCCCeEEEecCCceeeccceecCCCCcccCCCccccCCceeEEEEeeCCCccHH
Q 047363 472 QKHIQEAELQSLYLMMGQGLKPVASAKAGNVVAIRGLGQQILKSATLSSTRNCWPFSSMVFQVSPTLRVAIEPSDPADMG 551 (876)
Q Consensus 472 ~~~~~~~~I~~L~l~~G~~~~~v~~v~AGnIv~I~GL~~~i~k~~Tl~s~~~~~~~~~~~~~~~Pvv~vaIEP~~~~d~~ 551 (876)
.+++|++||.++|++..++++++|||||+|.|+++. .+|+||++...+..++++.+ +.|+++++|+|.+++|++
T Consensus 347 ----~~~~i~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~-~~gdtl~~~~~~~~~~~~~~-~~Pvl~~~i~p~~~~d~~ 420 (689)
T TIGR00484 347 ----KKERVGRLVKMHANNREEIKEVRAGDICAAIGLKDT-TTGDTLCDPKIDVILERMEF-PEPVISLAVEPKTKADQE 420 (689)
T ss_pred ----ceEEecceEEeecCCcccccccCCCCEEEEcCCCCC-CCCCEEeCCCCccccCCCCC-CCceEEEEEEECCcccHH
Confidence 347899999999999999999999999999999885 78999988776777777876 699999999999999999
Q ss_pred HHHHHHHHHHhcCCceEEEEc-cCCcEEEEecchhHHHHHHHHHHhhhccceEEEeCCeeeEEecCCCCCCCCccccccc
Q 047363 552 ALMKGLRLLNRADPFVEVSVS-SRGENVLAAAGEVHLERCIKDLKERFAKVSLEVSPPLVSYKETIEGDTSNPLQNVILL 630 (876)
Q Consensus 552 kL~~gL~~L~~~DP~l~v~~~-etGE~vl~g~GElHLe~~l~dL~~~fa~vei~vs~P~V~yrETI~~~~~~~~~~~~~~ 630 (876)
||.+||++|.++||+++|.++ ||||++|+|+||||||+|++||+++| ++++++++|.|+|||||.+++..
T Consensus 421 kL~~aL~~L~~eDpsl~v~~~~etge~il~g~GelHLei~~~~L~~~~-~vev~~~~p~V~yrEti~~~~~~-------- 491 (689)
T TIGR00484 421 KMGIALGKLAEEDPTFRTFTDPETGQTIIAGMGELHLDIIVDRMKREF-KVEANVGAPQVAYRETIRSKVEV-------- 491 (689)
T ss_pred HHHHHHHHHHHhCCEEEEEECCCCCCEEEEEeeHHHHHHHHHHHHHHh-CCeeEecCCEEEEeecccCcccc--------
Confidence 999999999999999999996 79999999999999999999999999 99999999999999999765421
Q ss_pred cCCcceEEeec--CCCceEEEEEeecCCh
Q 047363 631 SGSSDYFEKTT--PNGRCVVRVQVMKLPF 657 (876)
Q Consensus 631 ~~~~~~~~~~t--~n~~~~i~v~a~PLp~ 657 (876)
.+.....+ .+..++++++++|+|.
T Consensus 492 ---~~~~~~~~~~~~~~~~v~l~~eP~~~ 517 (689)
T TIGR00484 492 ---EGKHAKQSGGRGQYGHVKIRFEPLEP 517 (689)
T ss_pred ---ccccccccCCCCceEEEEEEEEECCC
Confidence 01111111 1224688999999975
No 12
>PRK13351 elongation factor G; Reviewed
Probab=100.00 E-value=1.1e-77 Score=726.61 Aligned_cols=498 Identities=27% Similarity=0.397 Sum_probs=396.7
Q ss_pred CCCCCCceEEEEEeCCCCcHHHHHHHHHHhhCCCCccccc--CCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEc
Q 047363 3 DSDTRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKL--AGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLID 80 (876)
Q Consensus 3 ~~~~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~--~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlID 80 (876)
++.++++|||+|+||.|||||||+++|++. +|.+.... .+..+++|+.+.|++||+|+.++..++.|.++.++|||
T Consensus 2 ~~~~~~irni~iiG~~~~GKTtL~~~ll~~--~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liD 79 (687)
T PRK13351 2 EMPLMQIRNIGILAHIDAGKTTLTERILFY--TGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLID 79 (687)
T ss_pred CCccccccEEEEECCCCCcchhHHHHHHHh--cCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEE
Confidence 456788999999999999999999999998 66655321 12346889999999999999999999999999999999
Q ss_pred CCCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccccccccChHHHHHHHHHHHHH
Q 047363 81 SPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLISELKLTPLEAYNRLLRIVHE 160 (876)
Q Consensus 81 TPGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~~e~~~~~~~~~~~l~~~l~~ 160 (876)
||||.+|..++..+++.+|++|+|+|+.+++..++..+|+++...++|+++|+||+|+.++++. ..+++
T Consensus 80 tPG~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~~~~-----------~~~~~ 148 (687)
T PRK13351 80 TPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRLIFINKMDRVGADLF-----------KVLED 148 (687)
T ss_pred CCCcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEECCCCCCCCHH-----------HHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999987643 34444
Q ss_pred hhhhhhhccccccccccccccccCcccccccccccccccccccccCCCCcEEEEeccCCCccchHHHHHHHHHhcCCCHH
Q 047363 161 VNGIMSAYKSEKYLSDVDSLLSVPSEKLGDENLQFIEDDEEDTFQPQKGNVAFVCGLDGWGFSISEFAEFYATKLGASTA 240 (876)
Q Consensus 161 vn~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~~gnV~f~Sa~~Gw~ftl~~fa~~y~~k~~~~~~ 240 (876)
++..+... ....+.|..+++.|.+.++ +|.
T Consensus 149 i~~~l~~~-------------------------------~~~~~~P~~~~~~~~g~id-----------~~~-------- 178 (687)
T PRK13351 149 IEERFGKR-------------------------------PLPLQLPIGSEDGFEGVVD-----------LIT-------- 178 (687)
T ss_pred HHHHHCCC-------------------------------eEEEEeccccCCceEEEEE-----------Ccc--------
Confidence 44332210 0123445555555554332 111
Q ss_pred HHHHhhcccceecCCCcccccccCCCCCCCCCCchhhhhchhHHHHHHHHcCCCCcHHHHHHHHHHcCCCCCHHHHhccC
Q 047363 241 ALEKALWGPRYFNPKTKMIVGKKGISTGTKARPMFVQFVLEPLWQVYQAALEPDGDKGVLEKVIKSFNLSIPRRELQNKD 320 (876)
Q Consensus 241 ~l~k~LWGd~y~~~ktkk~~~~~~~~~~~~~~p~Fv~fiL~pi~~l~~~v~~~d~~~~~l~k~l~~~g~~l~~~~l~~~~ 320 (876)
.....|+.. +.++.+... .. .+.|.++++++.+++++++++.|++ +|++|++ +..++.++++...
T Consensus 179 -~~~~~~~~~---~~~~~~~~~------~~-~~~~~~~~~~~~~~l~e~~~~~d~~--lle~~l~--~~~l~~~~l~~~~ 243 (687)
T PRK13351 179 -EPELHFSEG---DGGSTVEEG------PI-PEELLEEVEEAREKLIEALAEFDDE--LLELYLE--GEELSAEQLRAPL 243 (687)
T ss_pred -ceEEecccC---CCCCceEEc------cC-CHHHHHHHHHHHHHHHHHHHhcCHH--HHHHHhC--CCCCCHHHHHHHH
Confidence 112345432 122222211 11 3479999999999999999998776 9999998 7899999998866
Q ss_pred hHHHHHHhhhccccc---H-------HHHHHHHhhcCCCcccccchhhhcccccccccCCcccccccchhhhhhhhhccc
Q 047363 321 PKAVLQAVLSHWLPL---S-------DAILSMVVKCIPDPISAQSYRISRLLPKREILDNDVDCNVLTEADFVRKSVEVC 390 (876)
Q Consensus 321 ~k~ll~~v~~~~lp~---~-------~~lLd~i~~~lPsP~~a~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~c 390 (876)
++.++. .+|+|+ + +.|||+|++++|+|.+++..+... . .. ......|
T Consensus 244 ~~~~~~---~~~~PV~~gSA~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~-~------~~-------------~~~~~~~ 300 (687)
T PRK13351 244 REGTRS---GHLVPVLFGSALKNIGIEPLLDAVVDYLPSPLEVPPPRGSK-D------NG-------------KPVKVDP 300 (687)
T ss_pred HHHHHh---CCEEEEEecccCcCccHHHHHHHHHHHCCChhhcccccccC-C------CC-------------CceeecC
Confidence 766654 455665 3 799999999999998766554421 0 00 0123678
Q ss_pred CCCCCCCeEEEEEEeeeecccccCCCCCCccccccccCCCCCCCCccceEEEEEEEeCccCCCCEEEEeccccCCcchhh
Q 047363 391 NSSPEAPCVAFVSKMFAVPIKMLPQRGSNGEILDNYADKGGNGESEECFLAFARIFSGVLYSGQRVFVLSALYDPLKVES 470 (876)
Q Consensus 391 d~~~~~plv~~V~K~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iaf~RV~SGtL~~G~~v~vlg~~y~~~~~~~ 470 (876)
+ +++|+++||||++++|+. ..++|+|||||+|++||+|++.+++
T Consensus 301 ~--~~~pl~a~VfK~~~d~~~--------------------------G~i~~~RV~sGtl~~g~~v~~~~~~-------- 344 (687)
T PRK13351 301 D--PEKPLLALVFKVQYDPYA--------------------------GKLTYLRVYSGTLRAGSQLYNGTGG-------- 344 (687)
T ss_pred C--CCCCeEEEEEEeeecCCC--------------------------ceEEEEEEeEEEEcCCCEEEeCCCC--------
Confidence 8 889999999999988752 1599999999999999999887532
Q ss_pred hccccceeEEeEEEEecCCceeecceeeCCCeEEEecCCceeeccceecCCCCcccCCCccccCCceeEEEEeeCCCccH
Q 047363 471 MQKHIQEAELQSLYLMMGQGLKPVASAKAGNVVAIRGLGQQILKSATLSSTRNCWPFSSMVFQVSPTLRVAIEPSDPADM 550 (876)
Q Consensus 471 ~~~~~~~~~I~~L~l~~G~~~~~v~~v~AGnIv~I~GL~~~i~k~~Tl~s~~~~~~~~~~~~~~~Pvv~vaIEP~~~~d~ 550 (876)
+.++|++||.++|++.+++++++||||++|.||++. .+|+||++...+..+.++.+ +.|+++++|||.+++|.
T Consensus 345 -----~~~~i~~i~~~~g~~~~~v~~~~aGdI~~i~gl~~~-~~gdtl~~~~~~~~~~~~~~-~~pv~~~~Iep~~~~d~ 417 (687)
T PRK13351 345 -----KREKVGRLFRLQGNKREEVDRAKAGDIVAVAGLKEL-ETGDTLHDSADPVLLELLTF-PEPVVSLAVEPERRGDE 417 (687)
T ss_pred -----CceEeeeEEEEccCCeeECCccCCCCEEEEECcccC-ccCCEEeCCCCccccCCCCC-CCccEEEEEEECCcccH
Confidence 247899999999999999999999999999999985 68999987766667777655 78999999999999999
Q ss_pred HHHHHHHHHHHhcCCceEEEEc-cCCcEEEEecchhHHHHHHHHHHhhhccceEEEeCCeeeEEecCCCCCCCCcccccc
Q 047363 551 GALMKGLRLLNRADPFVEVSVS-SRGENVLAAAGEVHLERCIKDLKERFAKVSLEVSPPLVSYKETIEGDTSNPLQNVIL 629 (876)
Q Consensus 551 ~kL~~gL~~L~~~DP~l~v~~~-etGE~vl~g~GElHLe~~l~dL~~~fa~vei~vs~P~V~yrETI~~~~~~~~~~~~~ 629 (876)
+||.+||++|.++||+++|+.+ ||||++|+|+||||||+|++||+++| ++++++|+|.|+|||||.+.+..
T Consensus 418 ~kL~~aL~~L~~eDpsl~v~~~~etge~ii~g~GelHLei~~~rL~~~~-~vev~~~~p~V~y~Eti~~~~~~------- 489 (687)
T PRK13351 418 QKLAEALEKLVWEDPSLRVEEDEETGQTILSGMGELHLEVALERLRREF-KLEVNTGKPQVAYRETIRKMAEG------- 489 (687)
T ss_pred HHHHHHHHHHHHhCCeEEEEECCCCCCEEEEEecHHHHHHHHHHHHHHh-CCceEecCCeEEEEeeccccccc-------
Confidence 9999999999999999999996 89999999999999999999999999 99999999999999999875421
Q ss_pred ccCCcceEEeecCC---CceEEEEEeecCCh
Q 047363 630 LSGSSDYFEKTTPN---GRCVVRVQVMKLPF 657 (876)
Q Consensus 630 ~~~~~~~~~~~t~n---~~~~i~v~a~PLp~ 657 (876)
.. ...+..+ ....++++++|+|.
T Consensus 490 ----~~-~~~~~~~~~~~~~~v~~~~ep~~~ 515 (687)
T PRK13351 490 ----VY-RHKKQFGGKGQFGEVHLRVEPLER 515 (687)
T ss_pred ----cc-eeeeccCCCceEEEEEEEEEECCC
Confidence 11 1222222 23688999999875
No 13
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2e-78 Score=673.88 Aligned_cols=495 Identities=26% Similarity=0.391 Sum_probs=399.0
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCCCccccc--CCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCC
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKL--AGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGH 84 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~--~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh 84 (876)
+++|||+|++|.++||||++++++++ +|.+.... .++-+.+|+.+.|+.||||+.++++++.|.+++|||||||||
T Consensus 37 ~k~RNIgi~AhidsgKTT~tEr~Lyy--~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGH 114 (721)
T KOG0465|consen 37 NKIRNIGISAHIDAGKTTLTERMLYY--TGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGH 114 (721)
T ss_pred hhhcccceEEEEecCCceeeheeeee--cceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCc
Confidence 57999999999999999999999999 77775432 344578999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccccccccChHHHHHHHHHHHHHhhhh
Q 047363 85 MDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLISELKLTPLEAYNRLLRIVHEVNGI 164 (876)
Q Consensus 85 ~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~~e~~~~~~~~~~~l~~~l~~vn~~ 164 (876)
+||.-|+.+|+++.||||+|+|++.|++.||+.+|+|+.++++|.|.|+|||||.++++.-+..+++.+|. .+..
T Consensus 115 vDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry~vP~i~FiNKmDRmGa~~~~~l~~i~~kl~-----~~~a 189 (721)
T KOG0465|consen 115 VDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKRYNVPRICFINKMDRMGASPFRTLNQIRTKLN-----HKPA 189 (721)
T ss_pred eeEEEEehhhhhhccCeEEEEEcccceehhhHHHHHHHHhcCCCeEEEEehhhhcCCChHHHHHHHHhhcC-----Cchh
Confidence 99999999999999999999999999999999999999999999999999999999986544444444443 1111
Q ss_pred hhhccccccccccccccccCccccccccccccccc--ccccccCCCCcEEEEeccCCCccchHHHHHHHHHhcCCCHHHH
Q 047363 165 MSAYKSEKYLSDVDSLLSVPSEKLGDENLQFIEDD--EEDTFQPQKGNVAFVCGLDGWGFSISEFAEFYATKLGASTAAL 242 (876)
Q Consensus 165 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~f~p~~gnV~f~Sa~~Gw~ftl~~fa~~y~~k~~~~~~~l 242 (876)
+++-|.+.. +.|.+++|.. ..+||++++|..++.--+++ ++...|.
T Consensus 190 ---------------~vqiPig~e-~~f~GvvDlv~~kai~~~g~~g~~i~~~eIP~---~l~~~~~------------- 237 (721)
T KOG0465|consen 190 ---------------VVQIPIGSE-SNFKGVVDLVNGKAIYWDGENGEIVRKDEIPE---DLEELAE------------- 237 (721)
T ss_pred ---------------eeEcccccc-ccchhHHhhhhceEEEEcCCCCceeEeccCCH---HHHHHHH-------------
Confidence 111134332 3566776643 46788888877766522221 1111111
Q ss_pred HHhhcccceecCCCcccccccCCCCCCCCCCchhhhhchhHHHHHHHHcCCCCcHHHHHHHHHHcCCCCCHHHHhccChH
Q 047363 243 EKALWGPRYFNPKTKMIVGKKGISTGTKARPMFVQFVLEPLWQVYQAALEPDGDKGVLEKVIKSFNLSIPRRELQNKDPK 322 (876)
Q Consensus 243 ~k~LWGd~y~~~ktkk~~~~~~~~~~~~~~p~Fv~fiL~pi~~l~~~v~~~d~~~~~l~k~l~~~g~~l~~~~l~~~~~k 322 (876)
|---.|++.+++-|++ +.+.||+ +...+..+|+.+.+|
T Consensus 238 --------------------------------------e~R~~LIE~lad~DE~--l~e~fLe--e~~ps~~~l~~aIRr 275 (721)
T KOG0465|consen 238 --------------------------------------EKRQALIETLADVDET--LAEMFLE--EEEPSAQQLKAAIRR 275 (721)
T ss_pred --------------------------------------HHHHHHHHHHhhhhHH--HHHHHhc--cCCCCHHHHHHHHHH
Confidence 1112577888877766 9999998 567999999999999
Q ss_pred HHHHHhhhcccccH-------HHHHHHHhhcCCCcccccchhhhcccccccccCCcccccccchhhhhhhhhcccCCCCC
Q 047363 323 AVLQAVLSHWLPLS-------DAILSMVVKCIPDPISAQSYRISRLLPKREILDNDVDCNVLTEADFVRKSVEVCNSSPE 395 (876)
Q Consensus 323 ~ll~~v~~~~lp~~-------~~lLd~i~~~lPsP~~a~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~cd~~~~ 395 (876)
.++++.+.++|.++ ++|||+|++|||||.|.+.+.+.+- .+ + + + + ..|.+++|
T Consensus 276 ~Ti~r~fvPVl~GSAlKNkGVQPlLDAVvdYLPsP~Ev~n~a~~ke--------~~--~---~---e--k--v~l~~~~d 335 (721)
T KOG0465|consen 276 ATIKRSFVPVLCGSALKNKGVQPLLDAVVDYLPSPSEVENYALNKE--------TN--S---K---E--K--VTLSPSRD 335 (721)
T ss_pred HHhhcceeeEEechhhcccCcchHHHHHHHhCCChhhhcccccccC--------CC--C---c---c--c--eEeccCCC
Confidence 99999999999985 9999999999999999887655321 00 0 0 1 1 22333344
Q ss_pred C-CeEEEEEEeeeecccccCCCCCCccccccccCCCCCCCCccceEEEEEEEeCccCCCCEEEEeccccCCcchhhhccc
Q 047363 396 A-PCVAFVSKMFAVPIKMLPQRGSNGEILDNYADKGGNGESEECFLAFARIFSGVLYSGQRVFVLSALYDPLKVESMQKH 474 (876)
Q Consensus 396 ~-plv~~V~K~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iaf~RV~SGtL~~G~~v~vlg~~y~~~~~~~~~~~ 474 (876)
. |+++..||+...+++ .+.|+|||+|+|++|+.| ||++++
T Consensus 336 ~~Pfv~LAFKle~g~fG---------------------------qLTyvRvYqG~L~kG~~i------yN~rtg------ 376 (721)
T KOG0465|consen 336 KDPFVALAFKLEEGRFG---------------------------QLTYVRVYQGTLSKGDTI------YNVRTG------ 376 (721)
T ss_pred CCceeeeEEEeeecCcc---------------------------ceEEEEEeeeeecCCcEE------EecCCC------
Confidence 4 999999999988775 389999999999999999 555554
Q ss_pred cceeEEeEEEEecCCceeecceeeCCCeEEEecCCceeeccceecCC-CCcccCCCccccCCceeEEEEeeCCCccHHHH
Q 047363 475 IQEAELQSLYLMMGQGLKPVASAKAGNVVAIRGLGQQILKSATLSST-RNCWPFSSMVFQVSPTLRVAIEPSDPADMGAL 553 (876)
Q Consensus 475 ~~~~~I~~L~l~~G~~~~~v~~v~AGnIv~I~GL~~~i~k~~Tl~s~-~~~~~~~~~~~~~~Pvv~vaIEP~~~~d~~kL 553 (876)
+++|+++|+.|+...+++|++|.|||||++.|++- ..|+|+++. .....+.+|.. |+||+.+||+|.+..|.+++
T Consensus 377 -KKvrv~RL~rmHa~~medV~~v~AG~I~alfGidc--asGDTftd~~~~~~~m~si~v-PePVis~aikP~~k~d~~~f 452 (721)
T KOG0465|consen 377 -KKVRVGRLVRMHANDMEDVNEVLAGDICALFGIDC--ASGDTFTDKQNLALSMESIHI-PEPVISVAIKPVNKKDADNF 452 (721)
T ss_pred -ceeEhHHHhHhcccccchhhhhhccceeeeecccc--ccCceeccCccccceeeeeec-CCCeeEEEecccccccHHHH
Confidence 45899999999999999999999999999999954 479999887 44567777755 89999999999999999999
Q ss_pred HHHHHHHHhcCCceEEEEc-cCCcEEEEecchhHHHHHHHHHHhhhccceEEEeCCeeeEEecCCCCCCCCccccccccC
Q 047363 554 MKGLRLLNRADPFVEVSVS-SRGENVLAAAGEVHLERCIKDLKERFAKVSLEVSPPLVSYKETIEGDTSNPLQNVILLSG 632 (876)
Q Consensus 554 ~~gL~~L~~~DP~l~v~~~-etGE~vl~g~GElHLe~~l~dL~~~fa~vei~vs~P~V~yrETI~~~~~~~~~~~~~~~~ 632 (876)
.+||.++.+|||++++..+ |+||+||+||||||||+..+||+++| |+++.++.|.|.|||||..+.
T Consensus 453 skaL~rf~~EDPtFrv~~d~E~kqTvIsGMGELHLEIy~eRl~rEy-~~~~~~Gkp~VayRETi~~~~------------ 519 (721)
T KOG0465|consen 453 SKALNRFTKEDPTFRVSLDPEMKQTVISGMGELHLEIYVERLVREY-KVDAELGKPQVAYRETITSPV------------ 519 (721)
T ss_pred HHHHHhhcccCCceEEEeccccccchhhccchhhHHHHHHHHHHHh-CCccccCCceeeehhhcCCcc------------
Confidence 9999999999999999996 89999999999999999999999999 999999999999999998653
Q ss_pred CcceEEeecCCCc---eEEEEEeecCChh
Q 047363 633 SSDYFEKTTPNGR---CVVRVQVMKLPFT 658 (876)
Q Consensus 633 ~~~~~~~~t~n~~---~~i~v~a~PLp~~ 658 (876)
...+.+.+..++. .++.-..+|||.+
T Consensus 520 ~f~~~hKkqSgG~gqy~kv~g~~epl~~~ 548 (721)
T KOG0465|consen 520 EFDYTHKKQSGGAGQYGKVEGVIEPLPPG 548 (721)
T ss_pred cceeeeccccCCCccccceeeEEeecCCC
Confidence 2334555554443 3455666777664
No 14
>PRK12740 elongation factor G; Reviewed
Probab=100.00 E-value=3.1e-72 Score=677.88 Aligned_cols=484 Identities=27% Similarity=0.395 Sum_probs=381.4
Q ss_pred EeCCCCcHHHHHHHHHHhhCCCCccccc--CCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccchHHHH
Q 047363 15 LAHVDHGKTTLADHLIAATGGGLLHPKL--AGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFCSEVS 92 (876)
Q Consensus 15 vG~~~~GKTTL~~~Ll~~t~~g~i~~~~--~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~~e~~ 92 (876)
+||+|||||||+++|++. +|.+.... .+..+++|+...|++||+|+.....++.|+++.++|||||||.+|..++.
T Consensus 1 ig~~~~GKTTL~~~Ll~~--~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~ 78 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFY--TGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVE 78 (668)
T ss_pred CCCCCCcHHHHHHHHHHh--cCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHH
Confidence 699999999999999999 77765431 22347899999999999999999999999999999999999999999999
Q ss_pred HHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccccccccChHHHHHHHHHHHHHhhhhhhhccccc
Q 047363 93 TAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLISELKLTPLEAYNRLLRIVHEVNGIMSAYKSEK 172 (876)
Q Consensus 93 ~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~~e~~~~~~~~~~~l~~~l~~vn~~~~s~~~~~ 172 (876)
.+++.+|++|+|+|+.++...++..+|+++...++|+++|+||+|+...++ .+ .+.+++..+...
T Consensus 79 ~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~~~----~~-------~~~~l~~~l~~~---- 143 (668)
T PRK12740 79 RALRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRIIFVNKMDRAGADF----FR-------VLAQLQEKLGAP---- 143 (668)
T ss_pred HHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCH----HH-------HHHHHHHHHCCC----
Confidence 999999999999999999999999999999999999999999999986542 22 222233221110
Q ss_pred cccccccccccCcccccccccccccccccccccCCCCcEEEEeccCCCccchHHHHHHHHHhcCCCHHHHHHhhccccee
Q 047363 173 YLSDVDSLLSVPSEKLGDENLQFIEDDEEDTFQPQKGNVAFVCGLDGWGFSISEFAEFYATKLGASTAALEKALWGPRYF 252 (876)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~~gnV~f~Sa~~Gw~ftl~~fa~~y~~k~~~~~~~l~k~LWGd~y~ 252 (876)
....+.|.+++..|.+-++ + +..++ +||
T Consensus 144 ---------------------------~~~~~~p~~~~~~~~~~id-----------~-----------~~~~~---~~~ 171 (668)
T PRK12740 144 ---------------------------VVPLQLPIGEGDDFTGVVD-----------L-----------LSMKA---YRY 171 (668)
T ss_pred ---------------------------ceeEEecccCCCCceEEEE-----------C-----------ccceE---EEe
Confidence 0001223333333322111 0 11112 366
Q ss_pred cCCCcccccccCCCCCCCCCCchhhhhchhHHHHHHHHcCCCCcHHHHHHHHHHcCCCCCHHHHhccChHHHHHHhhhcc
Q 047363 253 NPKTKMIVGKKGISTGTKARPMFVQFVLEPLWQVYQAALEPDGDKGVLEKVIKSFNLSIPRRELQNKDPKAVLQAVLSHW 332 (876)
Q Consensus 253 ~~ktkk~~~~~~~~~~~~~~p~Fv~fiL~pi~~l~~~v~~~d~~~~~l~k~l~~~g~~l~~~~l~~~~~k~ll~~v~~~~ 332 (876)
+ +++.+... .. ...+.++++++.+++++++++.|++ ++++|++ +..++.++++....+.++ ...|
T Consensus 172 ~-~~~~~~~~------~~-~~~~~~~~~~~~~~l~e~~~~~d~~--~le~~l~--~~~l~~~~~~~~~~~~~~---~~~~ 236 (668)
T PRK12740 172 D-EGGPSEEI------EI-PAELLDRAEEAREELLEALAEFDDE--LMEKYLE--GEELSEEEIKAGLRKATL---AGEI 236 (668)
T ss_pred c-CCCeeEEe------cC-CHHHHHHHHHHHHHHHHHHHhcCHH--HHHHHHC--CCCCCHHHHHHHHHHHHH---cCCE
Confidence 6 44444321 11 3467889999999999999988776 9999997 578999998876666665 3577
Q ss_pred ccc----------HHHHHHHHhhcCCCcccccchhhhcccccccccCCcccccccchhhhhhhhhcccCCCCCCCeEEEE
Q 047363 333 LPL----------SDAILSMVVKCIPDPISAQSYRISRLLPKREILDNDVDCNVLTEADFVRKSVEVCNSSPEAPCVAFV 402 (876)
Q Consensus 333 lp~----------~~~lLd~i~~~lPsP~~a~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~cd~~~~~plv~~V 402 (876)
+|+ .+.||++|++++|+|.++++.. .. . ....++..|+ +++|+++||
T Consensus 237 ~Pv~~gSA~~~~Gv~~LLd~i~~~lPsp~~~~~~~--~~--------~-----------~~~~~~~~~~--~~~~l~a~v 293 (668)
T PRK12740 237 VPVFCGSALKNKGVQRLLDAVVDYLPSPLEVPPVD--GE--------D-----------GEEGAELAPD--PDGPLVALV 293 (668)
T ss_pred EEEEeccccCCccHHHHHHHHHHHCCChhhccccc--CC--------C-----------CccccccccC--CCCCeEEEE
Confidence 777 6899999999999998765421 00 0 1112356788 889999999
Q ss_pred EEeeeecccccCCCCCCccccccccCCCCCCCCccceEEEEEEEeCccCCCCEEEEeccccCCcchhhhccccceeEEeE
Q 047363 403 SKMFAVPIKMLPQRGSNGEILDNYADKGGNGESEECFLAFARIFSGVLYSGQRVFVLSALYDPLKVESMQKHIQEAELQS 482 (876)
Q Consensus 403 ~K~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iaf~RV~SGtL~~G~~v~vlg~~y~~~~~~~~~~~~~~~~I~~ 482 (876)
||++++++. .+++|+|||||+|++||+|++.+.+ ++++|++
T Consensus 294 ~k~~~~~~~--------------------------G~i~~~RV~sG~L~~g~~v~~~~~~-------------~~~~i~~ 334 (668)
T PRK12740 294 FKTMDDPFV--------------------------GKLSLVRVYSGTLKKGDTLYNSGTG-------------KKERVGR 334 (668)
T ss_pred EEeeecCCC--------------------------CcEEEEEEeeeEEcCCCEEEeCCCC-------------CcEEecc
Confidence 999987652 1599999999999999999886521 2478999
Q ss_pred EEEecCCceeecceeeCCCeEEEecCCceeeccceecCCCCcccCCCccccCCceeEEEEeeCCCccHHHHHHHHHHHHh
Q 047363 483 LYLMMGQGLKPVASAKAGNVVAIRGLGQQILKSATLSSTRNCWPFSSMVFQVSPTLRVAIEPSDPADMGALMKGLRLLNR 562 (876)
Q Consensus 483 L~l~~G~~~~~v~~v~AGnIv~I~GL~~~i~k~~Tl~s~~~~~~~~~~~~~~~Pvv~vaIEP~~~~d~~kL~~gL~~L~~ 562 (876)
||.++|++.+++++++||||++|.|++. +.+|+||++...+.+++++.+ ++|+++++|+|.+++|.++|.+||++|.+
T Consensus 335 l~~l~g~~~~~v~~~~aGdI~~i~gl~~-~~~Gdtl~~~~~~~~~~~~~~-~~P~~~~~i~p~~~~d~~~L~~aL~~l~~ 412 (668)
T PRK12740 335 LYRMHGKQREEVDEAVAGDIVAVAKLKD-AATGDTLCDKGDPILLEPMEF-PEPVISLAIEPKDKGDEEKLSEALGKLAE 412 (668)
T ss_pred eeeecCCCccccCccCCCCEEEEeccCc-cCCCCEEeCCCCccccCCCCC-CCcceEEEEEECCcchHHHHHHHHHHHHH
Confidence 9999999999999999999999999986 789999987766677888877 59999999999999999999999999999
Q ss_pred cCCceEEEEc-cCCcEEEEecchhHHHHHHHHHHhhhccceEEEeCCeeeEEecCCCCCCCCccccccccCCcceEEeec
Q 047363 563 ADPFVEVSVS-SRGENVLAAAGEVHLERCIKDLKERFAKVSLEVSPPLVSYKETIEGDTSNPLQNVILLSGSSDYFEKTT 641 (876)
Q Consensus 563 ~DP~l~v~~~-etGE~vl~g~GElHLe~~l~dL~~~fa~vei~vs~P~V~yrETI~~~~~~~~~~~~~~~~~~~~~~~~t 641 (876)
+||+++|..+ +|||++|.|+||||||+|++||+++| ++++.+++|.|+|||||.+++.. .......+
T Consensus 413 ~Dpsl~v~~~~~~ge~~l~g~GelhLei~~~~L~~~~-~~~v~~~~p~V~yrEti~~~~~~-----------~~~~~~~~ 480 (668)
T PRK12740 413 EDPTLRVERDEETGQTILSGMGELHLDVALERLKREY-GVEVETGPPQVPYRETIRKKAEG-----------HGRHKKQS 480 (668)
T ss_pred hCCeEEEEECCCCCCEEEEEecHHHHHHHHHHHHHHh-CceeEecCCeeEEeeccCCCccc-----------cceecccc
Confidence 9999999996 89999999999999999999999999 99999999999999999875421 11111122
Q ss_pred CC--CceEEEEEeecCChh
Q 047363 642 PN--GRCVVRVQVMKLPFT 658 (876)
Q Consensus 642 ~n--~~~~i~v~a~PLp~~ 658 (876)
.+ ...+++++++|+|.+
T Consensus 481 ~~~~~~~~v~l~~ep~~~~ 499 (668)
T PRK12740 481 GGHGQFGDVWLEVEPLPRG 499 (668)
T ss_pred CCCCceEEEEEEEEECCCC
Confidence 22 225899999999764
No 15
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.4e-62 Score=523.17 Aligned_cols=470 Identities=24% Similarity=0.355 Sum_probs=365.4
Q ss_pred CCCCceEEEEEeCCCCcHHHHHHHHHHhhCCCCccccc--CCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCC
Q 047363 5 DTRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKL--AGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSP 82 (876)
Q Consensus 5 ~~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~--~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTP 82 (876)
.+.+||||+|++|.++||||.++++++. +|.+.... ...-+++|+...|++||||+.++.+.+.|++|++|+||||
T Consensus 33 ~~akirnigiiahidagktttterily~--ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtp 110 (753)
T KOG0464|consen 33 AIAKIRNIGIIAHIDAGKTTTTERILYL--AGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTP 110 (753)
T ss_pred chhhhhcceeEEEecCCCchhHHHHHHH--hhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCC
Confidence 3467999999999999999999999999 88775421 1223789999999999999999999999999999999999
Q ss_pred CCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccccccccChHHHHHHHHHHHHHhh
Q 047363 83 GHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLISELKLTPLEAYNRLLRIVHEVN 162 (876)
Q Consensus 83 Gh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~~e~~~~~~~~~~~l~~~l~~vn 162 (876)
||+||.-|+.+++|+.||+|.|+|++.|++.||.++|+|+.+.++|.++|+||||++.++|+...+.+.+++.. .
T Consensus 111 ghvdf~leverclrvldgavav~dasagve~qtltvwrqadk~~ip~~~finkmdk~~anfe~avdsi~ekl~a-----k 185 (753)
T KOG0464|consen 111 GHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKFKIPAHCFINKMDKLAANFENAVDSIEEKLGA-----K 185 (753)
T ss_pred CcceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhccccCCchhhhhhhhhhhhhhhhhHHHHHHHHhCC-----c
Confidence 99999999999999999999999999999999999999999999999999999999998876544444433321 0
Q ss_pred hhhhhccccccccccccccccCcccccccccccccccccccccCCCCcEEEEeccCCCccchHHHHHHHHHhcCCCHHHH
Q 047363 163 GIMSAYKSEKYLSDVDSLLSVPSEKLGDENLQFIEDDEEDTFQPQKGNVAFVCGLDGWGFSISEFAEFYATKLGASTAAL 242 (876)
Q Consensus 163 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~~gnV~f~Sa~~Gw~ftl~~fa~~y~~k~~~~~~~l 242 (876)
. -.+..|.++.+.-.+ .|.+...++
T Consensus 186 ~---------------l~l~lpi~eak~fnk--------------------------------g~ldil~ke-------- 210 (753)
T KOG0464|consen 186 A---------------LKLQLPIGEAKGFNK--------------------------------GFLDILHKE-------- 210 (753)
T ss_pred e---------------EEEEecccccccccc--------------------------------hHHHHHHHh--------
Confidence 0 112225554431111 122332221
Q ss_pred HHhhcccceecCCCcccccccCCCCCCCCCCchhhhhchhHHHHHHHHcCCCCcHHHHHHHHHHcCC---CCCHHHHhcc
Q 047363 243 EKALWGPRYFNPKTKMIVGKKGISTGTKARPMFVQFVLEPLWQVYQAALEPDGDKGVLEKVIKSFNL---SIPRRELQNK 319 (876)
Q Consensus 243 ~k~LWGd~y~~~ktkk~~~~~~~~~~~~~~p~Fv~fiL~pi~~l~~~v~~~d~~~~~l~k~l~~~g~---~l~~~~l~~~ 319 (876)
+.||.=+--| .|-|.++ +.-.+. .|......-+.--.+.+.++..+++ .-+++++.+.. .++..+++..
T Consensus 211 -~l~~ncnsnd--gkd~e~~-plle~n--dpel~e~~ae~knal~~qlad~~~d--fad~~ldef~~n~d~i~a~elksa 282 (753)
T KOG0464|consen 211 -KLLGNCNSND--GKDFENK-PLLEKN--DPELAEELAEAKNALCEQLADLDAD--FADKFLDEFDENFDKIDAEELKSA 282 (753)
T ss_pred -hccCCCCCCc--cccccCC-cccccC--CHHHHHHHHHHHHHHHHHHhhccHH--HHHHHHHHhhccccccCHHHHHHH
Confidence 2344221111 1223222 211111 4555555555555677777777666 77788876643 4788889888
Q ss_pred ChHHHHHHhhhcccccH-------HHHHHHHhhcCCCcccccchhhhcccccccccCCcccccccchhhhhhhhhcccCC
Q 047363 320 DPKAVLQAVLSHWLPLS-------DAILSMVVKCIPDPISAQSYRISRLLPKREILDNDVDCNVLTEADFVRKSVEVCNS 392 (876)
Q Consensus 320 ~~k~ll~~v~~~~lp~~-------~~lLd~i~~~lPsP~~a~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~cd~ 392 (876)
.++........++++++ ++|||+|.-|||||.+.... +...|
T Consensus 283 i~~lt~aq~a~~i~cgsaiknkgiqplldavtmylpspeernye-flqwy------------------------------ 331 (753)
T KOG0464|consen 283 IHELTCAQKAAPILCGSAIKNKGIQPLLDAVTMYLPSPEERNYE-FLQWY------------------------------ 331 (753)
T ss_pred HHHHhhhhhhcceehhhhhcccCccchhhhhhhccCChhhcchH-HHhhh------------------------------
Confidence 88888777777777775 89999999999999765432 22222
Q ss_pred CCCCCeEEEEEEeeeecccccCCCCCCccccccccCCCCCCCCccceEEEEEEEeCccCCCCEEEEeccccCCcchhhhc
Q 047363 393 SPEAPCVAFVSKMFAVPIKMLPQRGSNGEILDNYADKGGNGESEECFLAFARIFSGVLYSGQRVFVLSALYDPLKVESMQ 472 (876)
Q Consensus 393 ~~~~plv~~V~K~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iaf~RV~SGtL~~G~~v~vlg~~y~~~~~~~~~ 472 (876)
...+++..||+.++..+ ..++|.|||||++++...++..+.
T Consensus 332 --kddlcalafkvlhdkqr--------------------------g~l~fmriysgsi~~~~ai~nin~----------- 372 (753)
T KOG0464|consen 332 --KDDLCALAFKVLHDKQR--------------------------GPLSFMRIYSGSIHNNLAIFNING----------- 372 (753)
T ss_pred --hhhHHHHhhhhhccccc--------------------------CceeEEEEecccccCceeeeeccc-----------
Confidence 12367889999987642 148999999999999999976531
Q ss_pred cccceeEEeEEEEecCCceeecceeeCCCeEEEecCCceeeccceecCCCC------------------------cccCC
Q 047363 473 KHIQEAELQSLYLMMGQGLKPVASAKAGNVVAIRGLGQQILKSATLSSTRN------------------------CWPFS 528 (876)
Q Consensus 473 ~~~~~~~I~~L~l~~G~~~~~v~~v~AGnIv~I~GL~~~i~k~~Tl~s~~~------------------------~~~~~ 528 (876)
...+.|.+|+++.+++..+|+++.||||....||+. ..+|+|+.++.. ..-|+
T Consensus 373 --~~se~~~kl~~pfade~~~i~qlsagnialt~glk~-tatgdtivaskasa~aa~qk~~~egekk~~q~~daerll~a 449 (753)
T KOG0464|consen 373 --MCSEGILKLFLPFADEHREIEQLSAGNIALTAGLKH-TATGDTIVASKASAEAAAQKAAGEGEKKHLQNKDAERLLFA 449 (753)
T ss_pred --ccccchHhhhccchhhhhhhhhcccccEEEEeccee-eccCCeEEecchhHHHHHHHhhccchhhccCCccccceeee
Confidence 134789999999999999999999999999999988 468999975421 12455
Q ss_pred CccccCCceeEEEEeeCCCccHHHHHHHHHHHHhcCCceEEEEc-cCCcEEEEecchhHHHHHHHHHHhhhccceEEEeC
Q 047363 529 SMVFQVSPTLRVAIEPSDPADMGALMKGLRLLNRADPFVEVSVS-SRGENVLAAAGEVHLERCIKDLKERFAKVSLEVSP 607 (876)
Q Consensus 529 ~~~~~~~Pvv~vaIEP~~~~d~~kL~~gL~~L~~~DP~l~v~~~-etGE~vl~g~GElHLe~~l~dL~~~fa~vei~vs~ 607 (876)
++.. +.||+.+.|||.+.+.++.+..||+.|.++||++.++.+ +|||+|++||||||+|.+-+++++.| |+++-+++
T Consensus 450 gie~-pd~vffc~iepps~~k~~d~ehale~lqredpslkir~d~dsgqtil~~~gelhie~ihdrikrey-~ldtfig~ 527 (753)
T KOG0464|consen 450 GIEI-PDAVFFCCIEPPSLRKLNDFEHALECLQREDPSLKIRFDPDSGQTILCGMGELHIEAIHDRIKREY-GLDTFIGK 527 (753)
T ss_pred cccC-CCceEEEeccCcccccchhHHHHHHHHhccCCceeEEecCCCCceEEeccchhhHHHHHHHHHhhc-Cchheehh
Confidence 6655 799999999999999999999999999999999999997 89999999999999999999999999 99999999
Q ss_pred CeeeEEecCCCC
Q 047363 608 PLVSYKETIEGD 619 (876)
Q Consensus 608 P~V~yrETI~~~ 619 (876)
-+|.|||+|.+.
T Consensus 528 lqvayre~i~~~ 539 (753)
T KOG0464|consen 528 LQVAYREMILEE 539 (753)
T ss_pred HHHHHHHHHHHH
Confidence 999999999654
No 16
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=100.00 E-value=1.4e-59 Score=547.23 Aligned_cols=443 Identities=24% Similarity=0.333 Sum_probs=339.4
Q ss_pred CCCceEEEEEeCCCCcHHHHHHHHHHhhCCCCccccc------CCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEE
Q 047363 6 TRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKL------AGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLI 79 (876)
Q Consensus 6 ~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~------~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlI 79 (876)
..++|||+|+||+|||||||+++|++. +|.+.... .+..+.+|+.+.|++||+|+.++..++.|+++.+|+|
T Consensus 7 ~~~~Rni~IiGh~daGKTTL~e~Ll~~--~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inli 84 (526)
T PRK00741 7 VAKRRTFAIISHPDAGKTTLTEKLLLF--GGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLL 84 (526)
T ss_pred hhcCCEEEEECCCCCCHHHHHHHHHHh--CCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEE
Confidence 468999999999999999999999998 77665321 2334568999999999999999999999999999999
Q ss_pred cCCCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccccccccChHHHHHHHHHHHH
Q 047363 80 DSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLISELKLTPLEAYNRLLRIVH 159 (876)
Q Consensus 80 DTPGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~~e~~~~~~~~~~~l~~~l~ 159 (876)
|||||.||..++.++++.+|+||+|||+.+|+..+++.+|+.+...++|+++|+||+|+..+++ .++...++..+.
T Consensus 85 DTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPiiv~iNK~D~~~a~~----~~~l~~i~~~l~ 160 (526)
T PRK00741 85 DTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRDGREP----LELLDEIEEVLG 160 (526)
T ss_pred ECCCchhhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEEECCcccccCH----HHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999999987653 233333332222
Q ss_pred HhhhhhhhccccccccccccccccCcccccccccccccccccccccCCCCcEEEEeccCCCccchHHHHHHHHHhcCCCH
Q 047363 160 EVNGIMSAYKSEKYLSDVDSLLSVPSEKLGDENLQFIEDDEEDTFQPQKGNVAFVCGLDGWGFSISEFAEFYATKLGAST 239 (876)
Q Consensus 160 ~vn~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~~gnV~f~Sa~~Gw~ftl~~fa~~y~~k~~~~~ 239 (876)
...+. +..|.+.+. .|.++++......+
T Consensus 161 -~~~~p---------------~~~Pig~~~-~f~Gvvdl~~~~~~----------------------------------- 188 (526)
T PRK00741 161 -IACAP---------------ITWPIGMGK-RFKGVYDLYNDEVE----------------------------------- 188 (526)
T ss_pred -CCCee---------------EEeccccCC-ceeEEEEeecceee-----------------------------------
Confidence 11111 111555443 34444432221111
Q ss_pred HHHHHhhcccceecCCCcccccccCCCCCCCCCCchhhhhchhHHHHHHHHcCCCCcHHHHHHHHHHc-------CCCCC
Q 047363 240 AALEKALWGPRYFNPKTKMIVGKKGISTGTKARPMFVQFVLEPLWQVYQAALEPDGDKGVLEKVIKSF-------NLSIP 312 (876)
Q Consensus 240 ~~l~k~LWGd~y~~~ktkk~~~~~~~~~~~~~~p~Fv~fiL~pi~~l~~~v~~~d~~~~~l~k~l~~~-------g~~l~ 312 (876)
.|+..++ + .. ++.+.+++.|++ +|++|++.. ++++.
T Consensus 189 -----------~~~~~~~---------~----~~-----------~~~e~~~~~dd~--lle~~l~~~~~~~l~~~lel~ 231 (526)
T PRK00741 189 -----------LYQPGEG---------H----TI-----------QEVEIIKGLDNP--ELDELLGEDLAEQLREELELV 231 (526)
T ss_pred -----------ecccCCC---------C----cc-----------eeeeeccCCCHH--HHHHHhcccHHHHHHHHHHhh
Confidence 0100000 0 00 112233444444 666666521 11344
Q ss_pred HHHHhccChHHHHHHhhhcccccH-------HHHHHHHhhcCCCcccccchhhhcccccccccCCcccccccchhhhhhh
Q 047363 313 RRELQNKDPKAVLQAVLSHWLPLS-------DAILSMVVKCIPDPISAQSYRISRLLPKREILDNDVDCNVLTEADFVRK 385 (876)
Q Consensus 313 ~~~l~~~~~k~ll~~v~~~~lp~~-------~~lLd~i~~~lPsP~~a~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 385 (876)
..++...+.+.++++.+.++|.+| +.|||+|++++|+|.+.....
T Consensus 232 ~~~~~~~~~~~~~~~~~~PV~~GSA~~n~Gv~~LLd~i~~~~P~P~~~~~~~---------------------------- 283 (526)
T PRK00741 232 QGASNEFDLEAFLAGELTPVFFGSALNNFGVQEFLDAFVEWAPAPQPRQTDE---------------------------- 283 (526)
T ss_pred hhcccchhHHHHhcCCeEEEEEeecccCcCHHHHHHHHHHHCCCCCcccccc----------------------------
Confidence 444445567788888788887774 999999999999996532110
Q ss_pred hhcccCCCCCCCeEEEEEEeee--ec-ccccCCCCCCccccccccCCCCCCCCccceEEEEEEEeCccCCCCEEEEeccc
Q 047363 386 SVEVCNSSPEAPCVAFVSKMFA--VP-IKMLPQRGSNGEILDNYADKGGNGESEECFLAFARIFSGVLYSGQRVFVLSAL 462 (876)
Q Consensus 386 ~~~~cd~~~~~plv~~V~K~~~--~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iaf~RV~SGtL~~G~~v~vlg~~ 462 (876)
..+++ .+.|+++||||+.+ +| + ...+||+|||||++++|+.|++..
T Consensus 284 --~~~~~-~~~~~~~~VFK~~~~m~~~~--------------------------~grlafvRV~sG~l~~g~~v~~~~-- 332 (526)
T PRK00741 284 --REVEP-TEEKFSGFVFKIQANMDPKH--------------------------RDRIAFVRVCSGKFEKGMKVRHVR-- 332 (526)
T ss_pred --eeecC-CCCceEEEEEEEEecCCCCc--------------------------CceEEEEEEeccEECCCCEEEecc--
Confidence 01111 34569999999985 22 2 125999999999999999996532
Q ss_pred cCCcchhhhccccceeEEeEEEEecCCceeecceeeCCCeEEEecCCceeeccceecCCCCcccCCCccccCCceeEEEE
Q 047363 463 YDPLKVESMQKHIQEAELQSLYLMMGQGLKPVASAKAGNVVAIRGLGQQILKSATLSSTRNCWPFSSMVFQVSPTLRVAI 542 (876)
Q Consensus 463 y~~~~~~~~~~~~~~~~I~~L~l~~G~~~~~v~~v~AGnIv~I~GL~~~i~k~~Tl~s~~~~~~~~~~~~~~~Pvv~vaI 542 (876)
.+ ++++|+++|.++|+++++|+++.||||++|.|+++ +.+|+||++.. ...|.++++ +.|++.++|
T Consensus 333 ----~~-------k~~ri~~~~~~~g~~~~~v~~a~aGDIv~v~~l~~-~~~GDTL~~~~-~~~~~~i~~-~~P~~~~~v 398 (526)
T PRK00741 333 ----TG-------KDVRISNALTFMAQDREHVEEAYAGDIIGLHNHGT-IQIGDTFTQGE-KLKFTGIPN-FAPELFRRV 398 (526)
T ss_pred ----CC-------ceEEecceEEEecCCceECceeCCCCEEEEECCCC-CccCCCccCCC-ccccCCCCC-CCccEEEEE
Confidence 22 34899999999999999999999999999999988 57899998755 566778877 589999999
Q ss_pred eeCCCccHHHHHHHHHHHHhcCCceEEEEc-cCCcEEEEecchhHHHHHHHHHHhhhccceEEEeCCeeeEEecCCC
Q 047363 543 EPSDPADMGALMKGLRLLNRADPFVEVSVS-SRGENVLAAAGEVHLERCIKDLKERFAKVSLEVSPPLVSYKETIEG 618 (876)
Q Consensus 543 EP~~~~d~~kL~~gL~~L~~~DP~l~v~~~-etGE~vl~g~GElHLe~~l~dL~~~fa~vei~vs~P~V~yrETI~~ 618 (876)
+|++++|.+||.+||++|.+||| +++..+ +|||++|+|+||+|||+++++|+++| ||++.+.+|.|++-.-|.+
T Consensus 399 ~p~~~~d~~kl~~aL~~L~eED~-l~~~~~~~t~e~il~g~G~lhleV~~~RL~~ey-~v~v~~~~~~v~~~rw~~~ 473 (526)
T PRK00741 399 RLKNPLKQKQLQKGLVQLSEEGA-VQVFRPLDNNDLILGAVGQLQFEVVAHRLKNEY-NVEAIYEPVGVATARWVEC 473 (526)
T ss_pred EECCchhHHHHHHHHHHHhhcCC-eEEEECCCCCCEEEEEEeHHHHHHHHHHHHHHh-CCEEEEecCCccEEEEEeC
Confidence 99999999999999999999996 889885 79999999999999999999999999 9999999999999888753
No 17
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=100.00 E-value=2e-57 Score=529.25 Aligned_cols=445 Identities=23% Similarity=0.318 Sum_probs=324.6
Q ss_pred CCCCceEEEEEeCCCCcHHHHHHHHHHhhCCCCccccc----CC--ceeeccChhhhhhcceeeeeeEEEEEEcCeEEEE
Q 047363 5 DTRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKL----AG--KLRFMDYLDEEQRRAITMKSSSIALHYKDYAINL 78 (876)
Q Consensus 5 ~~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~----~g--~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inl 78 (876)
...++|||+|+||+|+|||||+++|++. .|.+.... .| ..+++|+.+.|++||+|+.++.+.+.|+++.+||
T Consensus 7 ~~~~~RniaiiGh~~aGKTTL~e~Ll~~--~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inl 84 (527)
T TIGR00503 7 EVDKRRTFAIISHPDAGKTTITEKVLLY--GGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNL 84 (527)
T ss_pred hhccCCEEEEEcCCCCCHHHHHHHHHHh--CCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEE
Confidence 3468999999999999999999999998 77765421 11 2467999999999999999999999999999999
Q ss_pred EcCCCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccccccccChHHHHHHHHHHH
Q 047363 79 IDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLISELKLTPLEAYNRLLRIV 158 (876)
Q Consensus 79 IDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~~e~~~~~~~~~~~l~~~l 158 (876)
||||||.+|..++..+++.+|++|+|||+..|+..+++.+|+.+...++|+++|+||+|+..++ ++++...++..+
T Consensus 85 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~PiivviNKiD~~~~~----~~~ll~~i~~~l 160 (527)
T TIGR00503 85 LDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTFMNKLDRDIRD----PLELLDEVENEL 160 (527)
T ss_pred EECCChhhHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECccccCCC----HHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999998999999999999998654 334444443332
Q ss_pred HHhhhhhhhccccccccccccccccCccccccccccccccc--ccccccCCCCcEEEEeccCCCccchHHHHHHHHHhcC
Q 047363 159 HEVNGIMSAYKSEKYLSDVDSLLSVPSEKLGDENLQFIEDD--EEDTFQPQKGNVAFVCGLDGWGFSISEFAEFYATKLG 236 (876)
Q Consensus 159 ~~vn~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~f~p~~gnV~f~Sa~~Gw~ftl~~fa~~y~~k~~ 236 (876)
. ...+.. .-|++.+. .+.++++.. ..++|.+.. .||..... ...
T Consensus 161 ~-~~~~~~---------------~~PIg~~~-~f~gv~d~l~~~~~~y~~~~---------~~~~~~~~-~~~------- 206 (527)
T TIGR00503 161 K-INCAPI---------------TWPIGCGK-LFKGVYHLLKDETYLYQSGT---------GGTIQAVR-QVK------- 206 (527)
T ss_pred C-CCCccE---------------EEEecCCC-ceeEEEEcccCcceecCccC---------CCceeEee-hhc-------
Confidence 2 111100 01332221 233333321 122221111 11110000 000
Q ss_pred CCHHHHHHhhcccceecCCCcccccccCCCCCCCCCCchhhhhchhHHHHHHHHcCCCCcHHHHHHHHHHcCCCCCHHHH
Q 047363 237 ASTAALEKALWGPRYFNPKTKMIVGKKGISTGTKARPMFVQFVLEPLWQVYQAALEPDGDKGVLEKVIKSFNLSIPRREL 316 (876)
Q Consensus 237 ~~~~~l~k~LWGd~y~~~ktkk~~~~~~~~~~~~~~p~Fv~fiL~pi~~l~~~v~~~d~~~~~l~k~l~~~g~~l~~~~l 316 (876)
. ...|....++.+..++-|. +.+ ..++..+-.+
T Consensus 207 ------------------------------~--~~~~~~e~~~~~~~~~~~~---------~~l-e~~~~~~~~~----- 239 (527)
T TIGR00503 207 ------------------------------G--LNNPALDSAVGSDLAQQLR---------DEL-ELVEGASNEF----- 239 (527)
T ss_pred ------------------------------c--CCChhhhhhhhHHHHHHHH---------HHH-HHHhhhcccc-----
Confidence 0 0011111111111110000 011 1122212223
Q ss_pred hccChHHHHHHhhhcccccH-------HHHHHHHhhcCCCcccccchhhhcccccccccCCcccccccchhhhhhhhhcc
Q 047363 317 QNKDPKAVLQAVLSHWLPLS-------DAILSMVVKCIPDPISAQSYRISRLLPKREILDNDVDCNVLTEADFVRKSVEV 389 (876)
Q Consensus 317 ~~~~~k~ll~~v~~~~lp~~-------~~lLd~i~~~lPsP~~a~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (876)
+.+.++++.+.++|.+| +.|||+|++++|+|.+..... . ...
T Consensus 240 ---~~~~~~~~~~~PV~~GSA~~n~Gv~~LLd~i~~~~PsP~~~~~~~------------~----------------~~~ 288 (527)
T TIGR00503 240 ---DLAAFHGGEMTPVFFGTALGNFGVDHFLDGLLQWAPKPEARQSDT------------R----------------TVE 288 (527)
T ss_pred ---CHHHHhcCCeeEEEEeecccCccHHHHHHHHHHHCCCCccccCCc------------e----------------ecC
Confidence 34566667777777774 999999999999996532110 0 011
Q ss_pred cCCCCCCCeEEEEEEeee--ec-ccccCCCCCCccccccccCCCCCCCCccceEEEEEEEeCccCCCCEEEEeccccCCc
Q 047363 390 CNSSPEAPCVAFVSKMFA--VP-IKMLPQRGSNGEILDNYADKGGNGESEECFLAFARIFSGVLYSGQRVFVLSALYDPL 466 (876)
Q Consensus 390 cd~~~~~plv~~V~K~~~--~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iaf~RV~SGtL~~G~~v~vlg~~y~~~ 466 (876)
+ +++|+++||||+.+ +| +. ..+||+|||||+|++|++|++.+
T Consensus 289 ~---~~~~~~~~VFK~~~~mdp~~~--------------------------griaf~RV~sG~l~~g~~v~~~~------ 333 (527)
T TIGR00503 289 P---TEEKFSGFVFKIQANMDPKHR--------------------------DRVAFMRVVSGKYEKGMKLKHVR------ 333 (527)
T ss_pred C---CCCCeeEEEEEEEeccCcccC--------------------------ceEEEEEEeeeEEcCCCEEEecC------
Confidence 2 35679999999987 64 32 14999999999999999996543
Q ss_pred chhhhccccceeEEeEEEEecCCceeecceeeCCCeEEEecCCceeeccceecCCCCcccCCCccccCCceeEEEEeeCC
Q 047363 467 KVESMQKHIQEAELQSLYLMMGQGLKPVASAKAGNVVAIRGLGQQILKSATLSSTRNCWPFSSMVFQVSPTLRVAIEPSD 546 (876)
Q Consensus 467 ~~~~~~~~~~~~~I~~L~l~~G~~~~~v~~v~AGnIv~I~GL~~~i~k~~Tl~s~~~~~~~~~~~~~~~Pvv~vaIEP~~ 546 (876)
++ ++++|++++.++|+++++|+++.||||+++.|+++ +.+|+||++. ....+.++.+ +.|++.++|+|++
T Consensus 334 ~~-------k~~ri~~~~~~~g~~~~~v~~a~aGDI~~~~~~~~-~~~GDtl~~~-~~~~~~~i~~-~~P~~~~~v~~~~ 403 (527)
T TIGR00503 334 TG-------KDVVISDALTFMAGDREHVEEAYAGDIIGLHNHGT-IQIGDTFTQG-EKIKFTGIPN-FAPELFRRIRLKD 403 (527)
T ss_pred CC-------CcEEecchhhhhcCCceEcceeCCCCEEEEECCCC-cccCCEecCC-CceeecCCCC-CCcceEEEEEECC
Confidence 22 34899999999999999999999999999999988 5789999874 3566777776 5899999999999
Q ss_pred CccHHHHHHHHHHHHhcCCceEEEEc-cCCcEEEEecchhHHHHHHHHHHhhhccceEEEeCCeeeEEe
Q 047363 547 PADMGALMKGLRLLNRADPFVEVSVS-SRGENVLAAAGEVHLERCIKDLKERFAKVSLEVSPPLVSYKE 614 (876)
Q Consensus 547 ~~d~~kL~~gL~~L~~~DP~l~v~~~-etGE~vl~g~GElHLe~~l~dL~~~fa~vei~vs~P~V~yrE 614 (876)
++|.+||.+||++|.+||| +++..+ +|||++|+|+||+|||+++++|+++| ||++.+.+|.|+.-=
T Consensus 404 ~~d~~kl~~aL~~L~eED~-l~v~~~~~t~e~il~g~GelhleV~~~RL~~ey-~v~v~~~~~~v~~~r 470 (527)
T TIGR00503 404 PLKQKQLLKGLVQLSEEGA-VQVFRPLDNNDLIVGAVGVLQFDVVVYRLKEEY-NVEARYEPVNVATAR 470 (527)
T ss_pred hhhHHHHHHHHHHHHhhCC-eEEEEcCCCCCEEEEEEeHHHHHHHHHHHHHHh-CCeEEEeCCCceEEE
Confidence 9999999999999999999 899885 79999999999999999999999999 999999999988543
No 18
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=100.00 E-value=2.8e-54 Score=508.64 Aligned_cols=383 Identities=30% Similarity=0.451 Sum_probs=312.8
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccch
Q 047363 9 IRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFC 88 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~ 88 (876)
||||+|+||+|||||||+++|++. +|.+.....-..+++|+.+.|++||+|+.++..++.|++++|||||||||.||.
T Consensus 1 iRNIaIiGHvd~GKTTLv~~LL~~--sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~ 78 (594)
T TIGR01394 1 IRNIAIIAHVDHGKTTLVDALLKQ--SGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFG 78 (594)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh--cCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHH
Confidence 799999999999999999999999 777765433334789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccccccccChHHHHHHHHHHHHHhhhhhhhc
Q 047363 89 SEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLISELKLTPLEAYNRLLRIVHEVNGIMSAY 168 (876)
Q Consensus 89 ~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~~e~~~~~~~~~~~l~~~l~~vn~~~~s~ 168 (876)
.++.++++.+|+||+|||+.+|+..|++.+|+.+...++|+|+|+||+|+..+++ .++...+...+..+.
T Consensus 79 ~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~~a~~----~~v~~ei~~l~~~~g------ 148 (594)
T TIGR01394 79 GEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPSARP----DEVVDEVFDLFAELG------ 148 (594)
T ss_pred HHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCCCcCH----HHHHHHHHHHHHhhc------
Confidence 9999999999999999999999999999999999999999999999999976442 233333322222110
Q ss_pred cccccccccccccccCcccccccccccccccccccccCCCCcEEEEeccCCCccchHHHHHHHHHhcCCCHHHHHHhhcc
Q 047363 169 KSEKYLSDVDSLLSVPSEKLGDENLQFIEDDEEDTFQPQKGNVAFVCGLDGWGFSISEFAEFYATKLGASTAALEKALWG 248 (876)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~~gnV~f~Sa~~Gw~ftl~~fa~~y~~k~~~~~~~l~k~LWG 248 (876)
. .++...| .|+++||+.||++.-.
T Consensus 149 -~---------------------------~~e~l~~-----pvl~~SA~~g~~~~~~----------------------- 172 (594)
T TIGR01394 149 -A---------------------------DDEQLDF-----PIVYASGRAGWASLDL----------------------- 172 (594)
T ss_pred -c---------------------------ccccccC-----cEEechhhcCcccccC-----------------------
Confidence 0 0011111 3789999999863110
Q ss_pred cceecCCCcccccccCCCCCCCCCCchhhhhchhHHHHHHHHcCCCCcHHHHHHHHHHcCCCCCHHHHhccChHHHHHHh
Q 047363 249 PRYFNPKTKMIVGKKGISTGTKARPMFVQFVLEPLWQVYQAALEPDGDKGVLEKVIKSFNLSIPRRELQNKDPKAVLQAV 328 (876)
Q Consensus 249 d~y~~~ktkk~~~~~~~~~~~~~~p~Fv~fiL~pi~~l~~~v~~~d~~~~~l~k~l~~~g~~l~~~~l~~~~~k~ll~~v 328 (876)
... .+
T Consensus 173 ------------------------------------------~~~-~~-------------------------------- 177 (594)
T TIGR01394 173 ------------------------------------------DDP-SD-------------------------------- 177 (594)
T ss_pred ------------------------------------------ccc-cc--------------------------------
Confidence 000 00
Q ss_pred hhcccccHHHHHHHHhhcCCCcccccchhhhcccccccccCCcccccccchhhhhhhhhcccCCCCCCCeEEEEEEeeee
Q 047363 329 LSHWLPLSDAILSMVVKCIPDPISAQSYRISRLLPKREILDNDVDCNVLTEADFVRKSVEVCNSSPEAPCVAFVSKMFAV 408 (876)
Q Consensus 329 ~~~~lp~~~~lLd~i~~~lPsP~~a~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~cd~~~~~plv~~V~K~~~~ 408 (876)
....||++|++++|+|.. + +++|+.++|+|++++
T Consensus 178 ------gi~~Lld~Iv~~lP~P~~--------------------------------------~--~~~pl~~~V~~i~~d 211 (594)
T TIGR01394 178 ------NMAPLFDAIVRHVPAPKG--------------------------------------D--LDEPLQMLVTNLDYD 211 (594)
T ss_pred ------CHHHHHHHHHHhCCCCCC--------------------------------------C--CCCCEEEEEEEEEee
Confidence 012578899999999931 1 468999999999998
Q ss_pred cccccCCCCCCccccccccCCCCCCCCccceEEEEEEEeCccCCCCEEEEeccccCCcchhhhccccceeEEeEEEEecC
Q 047363 409 PIKMLPQRGSNGEILDNYADKGGNGESEECFLAFARIFSGVLYSGQRVFVLSALYDPLKVESMQKHIQEAELQSLYLMMG 488 (876)
Q Consensus 409 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iaf~RV~SGtL~~G~~v~vlg~~y~~~~~~~~~~~~~~~~I~~L~l~~G 488 (876)
++.. .++++|||||+|++||.|++...+ + ....++|++|+.++|
T Consensus 212 ~~~G--------------------------rv~~gRV~sG~lk~G~~V~~~~~~-----~-----~~~~~kV~~i~~~~g 255 (594)
T TIGR01394 212 EYLG--------------------------RIAIGRVHRGTVKKGQQVALMKRD-----G-----TIENGRISKLLGFEG 255 (594)
T ss_pred CCCc--------------------------eEEEEEEEeCEEccCCEEEEecCC-----C-----ceeEEEEEEEEEccC
Confidence 7631 489999999999999999886421 1 112479999999999
Q ss_pred CceeecceeeCCCeEEEecCCceeeccceecCCCCcccCCCccccCCceeEEEEeeCCC---ccHHH------HHHHHHH
Q 047363 489 QGLKPVASAKAGNVVAIRGLGQQILKSATLSSTRNCWPFSSMVFQVSPTLRVAIEPSDP---ADMGA------LMKGLRL 559 (876)
Q Consensus 489 ~~~~~v~~v~AGnIv~I~GL~~~i~k~~Tl~s~~~~~~~~~~~~~~~Pvv~vaIEP~~~---~d~~k------L~~gL~~ 559 (876)
.+..++++|.|||||+|.|+++ +..|+||++.....+++++.+ ++|++.++++|.+. .+..| |.++|.+
T Consensus 256 ~~~~~v~~a~aGDiv~i~gl~~-i~~Gdtl~~~~~~~~l~~~~~-~~P~~~~~~~~~~~p~~~~e~k~~t~~~l~~~L~k 333 (594)
T TIGR01394 256 LERVEIDEAGAGDIVAVAGLED-INIGETIADPEVPEALPTITV-DEPTLSMTFSVNDSPLAGKEGKKVTSRHIRDRLMR 333 (594)
T ss_pred CCceECCEECCCCEEEEeCCcc-cCCCCEEeCCCccccCCCCCC-CCCeEEEEEEecCCCcccccchhhhHHHHHHHHHH
Confidence 9999999999999999999988 678999998877777877766 79999999999743 33333 9999999
Q ss_pred HHhcCCceEEEEc-cCCcEEEEecchhHHHHHHHHHHhhhccceEEEeCCeeeEEecCCCCCC
Q 047363 560 LNRADPFVEVSVS-SRGENVLAAAGEVHLERCIKDLKERFAKVSLEVSPPLVSYKETIEGDTS 621 (876)
Q Consensus 560 L~~~DP~l~v~~~-etGE~vl~g~GElHLe~~l~dL~~~fa~vei~vs~P~V~yrETI~~~~~ 621 (876)
+.++||++.|..+ +++|++|+|+|||||++++++||++ |+|+.+|+|.|+||| |.+...
T Consensus 334 ~~~~d~sl~v~~~~~~~~~~v~g~GelHL~il~e~lrre--g~e~~~~~P~V~yre-i~g~ll 393 (594)
T TIGR01394 334 ELETNVALRVEDTESADKFEVSGRGELHLSILIETMRRE--GFELQVGRPQVIYKE-IDGKKL 393 (594)
T ss_pred hhccCCeEEEEEecCCCeEEEEEECHHHHHHHHHHHhcc--CceEEEeCCEEEEEe-CCCeEE
Confidence 9999999999985 7999999999999999999999987 999999999999999 765433
No 19
>PRK10218 GTP-binding protein; Provisional
Probab=100.00 E-value=5.7e-54 Score=505.23 Aligned_cols=380 Identities=27% Similarity=0.421 Sum_probs=312.0
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCcc
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMD 86 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~d 86 (876)
++||||+|+||+|||||||+++|++. .|.+........+++|+.+.|++||+|+.+..+++.|+++.+|+||||||.+
T Consensus 3 ~~iRnIaIiGh~d~GKTTLv~~Ll~~--~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~d 80 (607)
T PRK10218 3 EKLRNIAIIAHVDHGKTTLVDKLLQQ--SGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHAD 80 (607)
T ss_pred CCceEEEEECCCCCcHHHHHHHHHHh--cCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcch
Confidence 57999999999999999999999998 7777654332348999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccccccccChHHHHHHHHHHHHHhhhhhh
Q 047363 87 FCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLISELKLTPLEAYNRLLRIVHEVNGIMS 166 (876)
Q Consensus 87 F~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~~e~~~~~~~~~~~l~~~l~~vn~~~~ 166 (876)
|..++..+++.+|++|+|||+.+|+..|++.+|+.+...++|+++|+||+|+..+++. ++...+...+..+..
T Consensus 81 f~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~~a~~~----~vl~ei~~l~~~l~~--- 153 (607)
T PRK10218 81 FGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGARPD----WVVDQVFDLFVNLDA--- 153 (607)
T ss_pred hHHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCCCCchh----HHHHHHHHHHhccCc---
Confidence 9999999999999999999999999999999999999999999999999999876533 222222222111100
Q ss_pred hccccccccccccccccCcccccccccccccccccccccCCCCcEEEEeccCCCccchHHHHHHHHHhcCCCHHHHHHhh
Q 047363 167 AYKSEKYLSDVDSLLSVPSEKLGDENLQFIEDDEEDTFQPQKGNVAFVCGLDGWGFSISEFAEFYATKLGASTAALEKAL 246 (876)
Q Consensus 167 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~~gnV~f~Sa~~Gw~ftl~~fa~~y~~k~~~~~~~l~k~L 246 (876)
. +...-| .|+++||+.||+- .+
T Consensus 154 ------------------~-------------~~~~~~-----PVi~~SA~~G~~~--------------~~-------- 175 (607)
T PRK10218 154 ------------------T-------------DEQLDF-----PIVYASALNGIAG--------------LD-------- 175 (607)
T ss_pred ------------------c-------------ccccCC-----CEEEeEhhcCccc--------------CC--------
Confidence 0 000001 3889999999851 00
Q ss_pred cccceecCCCcccccccCCCCCCCCCCchhhhhchhHHHHHHHHcCCCCcHHHHHHHHHHcCCCCCHHHHhccChHHHHH
Q 047363 247 WGPRYFNPKTKMIVGKKGISTGTKARPMFVQFVLEPLWQVYQAALEPDGDKGVLEKVIKSFNLSIPRRELQNKDPKAVLQ 326 (876)
Q Consensus 247 WGd~y~~~ktkk~~~~~~~~~~~~~~p~Fv~fiL~pi~~l~~~v~~~d~~~~~l~k~l~~~g~~l~~~~l~~~~~k~ll~ 326 (876)
.+.. .
T Consensus 176 ----------------------------------------------~~~~--------------------~--------- 180 (607)
T PRK10218 176 ----------------------------------------------HEDM--------------------A--------- 180 (607)
T ss_pred ----------------------------------------------cccc--------------------c---------
Confidence 0000 0
Q ss_pred HhhhcccccHHHHHHHHhhcCCCcccccchhhhcccccccccCCcccccccchhhhhhhhhcccCCCCCCCeEEEEEEee
Q 047363 327 AVLSHWLPLSDAILSMVVKCIPDPISAQSYRISRLLPKREILDNDVDCNVLTEADFVRKSVEVCNSSPEAPCVAFVSKMF 406 (876)
Q Consensus 327 ~v~~~~lp~~~~lLd~i~~~lPsP~~a~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~cd~~~~~plv~~V~K~~ 406 (876)
.....||++|++++|+|.. + +++|+.++|||++
T Consensus 181 -------~~i~~Lld~Ii~~iP~P~~--------------------------------------~--~~~Pl~~~V~k~~ 213 (607)
T PRK10218 181 -------EDMTPLYQAIVDHVPAPDV--------------------------------------D--LDGPFQMQISQLD 213 (607)
T ss_pred -------cchHHHHHHHHHhCCCCCC--------------------------------------C--CCCCeEEEEEeeE
Confidence 0112678999999999931 1 5689999999999
Q ss_pred eecccccCCCCCCccccccccCCCCCCCCccceEEEEEEEeCccCCCCEEEEeccccCCcchhhhccccceeEEeEEEEe
Q 047363 407 AVPIKMLPQRGSNGEILDNYADKGGNGESEECFLAFARIFSGVLYSGQRVFVLSALYDPLKVESMQKHIQEAELQSLYLM 486 (876)
Q Consensus 407 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iaf~RV~SGtL~~G~~v~vlg~~y~~~~~~~~~~~~~~~~I~~L~l~ 486 (876)
.+++.. .++++|||||+|++||.|++.... + ...+++|++||.+
T Consensus 214 ~d~~~G--------------------------~i~~gRV~sG~lk~Gd~v~~~~~~-----~-----~~~~~rv~~l~~~ 257 (607)
T PRK10218 214 YNSYVG--------------------------VIGIGRIKRGKVKPNQQVTIIDSE-----G-----KTRNAKVGKVLGH 257 (607)
T ss_pred ecCCCc--------------------------EEEEEEEEeCcCcCCCEEEEecCC-----C-----cEeeEEEEEEEEE
Confidence 887631 499999999999999999876421 1 1124789999999
Q ss_pred cCCceeecceeeCCCeEEEecCCceeeccceecCCCCcccCCCccccCCceeEEEEeeCC---CccHHHHHH---HHHHH
Q 047363 487 MGQGLKPVASAKAGNVVAIRGLGQQILKSATLSSTRNCWPFSSMVFQVSPTLRVAIEPSD---PADMGALMK---GLRLL 560 (876)
Q Consensus 487 ~G~~~~~v~~v~AGnIv~I~GL~~~i~k~~Tl~s~~~~~~~~~~~~~~~Pvv~vaIEP~~---~~d~~kL~~---gL~~L 560 (876)
+|.+..++++|.|||||+|.|+++ +..|+||++.....+++++.+ ++|++.+++.|.+ ..|..|+.. +|.+|
T Consensus 258 ~g~~~~~v~~a~AGdIvai~gl~~-~~~GdTl~~~~~~~~l~~~~~-~~P~~~~~~~~~~sp~~g~e~k~~t~~~~~~rL 335 (607)
T PRK10218 258 LGLERIETDLAEAGDIVAITGLGE-LNISDTVCDTQNVEALPALSV-DEPTVSMFFCVNTSPFCGKEGKFVTSRQILDRL 335 (607)
T ss_pred ecCCceECCEEcCCCEEEEECccc-cccCcEEecCCCcccCCCCCC-CCCeEEEEEEeCCCccccchhhhhhHHHHHHHH
Confidence 999999999999999999999998 578999988766666776766 6999999999999 779999876 77777
Q ss_pred Hh---cCCceEEEEc-cCCcEEEEecchhHHHHHHHHHHhhhccceEEEeCCeeeEEec
Q 047363 561 NR---ADPFVEVSVS-SRGENVLAAAGEVHLERCIKDLKERFAKVSLEVSPPLVSYKET 615 (876)
Q Consensus 561 ~~---~DP~l~v~~~-etGE~vl~g~GElHLe~~l~dL~~~fa~vei~vs~P~V~yrET 615 (876)
.+ +||++.|..+ +++|++|+|+|||||++++++|+++ |+|+.+|+|.|+||||
T Consensus 336 ~~~~~~D~sl~v~~~~~~~~~~v~g~GelHL~il~e~lrre--g~e~~~~~P~V~yret 392 (607)
T PRK10218 336 NKELVHNVALRVEETEDADAFRVSGRGELHLSVLIENMRRE--GFELAVSRPKVIFREI 392 (607)
T ss_pred HHhhCCCCeEEEEEcCCCCeEEEEEEcHHHHHHHHHHHHhC--CceEEEeCCEEEEEEE
Confidence 77 8999999985 7999999999999999999999998 9999999999999998
No 20
>PRK05433 GTP-binding protein LepA; Provisional
Probab=100.00 E-value=1.7e-51 Score=486.58 Aligned_cols=363 Identities=30% Similarity=0.473 Sum_probs=298.9
Q ss_pred CCCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEc-----CeEEEEEc
Q 047363 6 TRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYK-----DYAINLID 80 (876)
Q Consensus 6 ~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~-----~~~inlID 80 (876)
.++||||+|+||+|||||||+++|++. +|.++.+.. ..+++|+.+.|++||+|++++.+++.|. ++.+||||
T Consensus 4 ~~~iRNi~IiGhvd~GKTTL~~rLl~~--tg~i~~~~~-~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiD 80 (600)
T PRK05433 4 MKNIRNFSIIAHIDHGKSTLADRLIEL--TGTLSEREM-KAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLID 80 (600)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHh--cCCCccccc-ccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEE
Confidence 468999999999999999999999999 777765432 3478999999999999999999999886 68999999
Q ss_pred CCCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccccccccChHHHHHHHHHHHHH
Q 047363 81 SPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLISELKLTPLEAYNRLLRIVHE 160 (876)
Q Consensus 81 TPGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~~e~~~~~~~~~~~l~~~l~~ 160 (876)
||||.+|..++.++++.||++|+|||+.+|++.++...|..+...++|+++|+||+|+..++. ++. ..+
T Consensus 81 TPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~a~~----~~v-------~~e 149 (600)
T PRK05433 81 TPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPAADP----ERV-------KQE 149 (600)
T ss_pred CCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCcccH----HHH-------HHH
Confidence 999999999999999999999999999999999999999888888999999999999875431 111 111
Q ss_pred hhhhhhhccccccccccccccccCcccccccccccccccccccccCCCCcEEEEeccCCCccchHHHHHHHHHhcCCCHH
Q 047363 161 VNGIMSAYKSEKYLSDVDSLLSVPSEKLGDENLQFIEDDEEDTFQPQKGNVAFVCGLDGWGFSISEFAEFYATKLGASTA 240 (876)
Q Consensus 161 vn~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~~gnV~f~Sa~~Gw~ftl~~fa~~y~~k~~~~~~ 240 (876)
+...+. +. ...|+++||+.|++.
T Consensus 150 i~~~lg-------------------------------------~~--~~~vi~iSAktG~GI------------------ 172 (600)
T PRK05433 150 IEDVIG-------------------------------------ID--ASDAVLVSAKTGIGI------------------ 172 (600)
T ss_pred HHHHhC-------------------------------------CC--cceEEEEecCCCCCH------------------
Confidence 111100 00 013567777666420
Q ss_pred HHHHhhcccceecCCCcccccccCCCCCCCCCCchhhhhchhHHHHHHHHcCCCCcHHHHHHHHHHcCCCCCHHHHhccC
Q 047363 241 ALEKALWGPRYFNPKTKMIVGKKGISTGTKARPMFVQFVLEPLWQVYQAALEPDGDKGVLEKVIKSFNLSIPRRELQNKD 320 (876)
Q Consensus 241 ~l~k~LWGd~y~~~ktkk~~~~~~~~~~~~~~p~Fv~fiL~pi~~l~~~v~~~d~~~~~l~k~l~~~g~~l~~~~l~~~~ 320 (876)
T Consensus 173 -------------------------------------------------------------------------------- 172 (600)
T PRK05433 173 -------------------------------------------------------------------------------- 172 (600)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHhhhcccccHHHHHHHHhhcCCCcccccchhhhcccccccccCCcccccccchhhhhhhhhcccCCCCCCCeEE
Q 047363 321 PKAVLQAVLSHWLPLSDAILSMVVKCIPDPISAQSYRISRLLPKREILDNDVDCNVLTEADFVRKSVEVCNSSPEAPCVA 400 (876)
Q Consensus 321 ~k~ll~~v~~~~lp~~~~lLd~i~~~lPsP~~a~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~cd~~~~~plv~ 400 (876)
+.|++.+++.+|+|.. + +++|+.+
T Consensus 173 ----------------~~Ll~~I~~~lp~P~~--------------------------------------~--~~~pl~~ 196 (600)
T PRK05433 173 ----------------EEVLEAIVERIPPPKG--------------------------------------D--PDAPLKA 196 (600)
T ss_pred ----------------HHHHHHHHHhCccccC--------------------------------------C--CCCCceE
Confidence 1346667777888831 1 5689999
Q ss_pred EEEEeeeecccccCCCCCCccccccccCCCCCCCCccceEEEEEEEeCccCCCCEEEEeccccCCcchhhhccccceeEE
Q 047363 401 FVSKMFAVPIKMLPQRGSNGEILDNYADKGGNGESEECFLAFARIFSGVLYSGQRVFVLSALYDPLKVESMQKHIQEAEL 480 (876)
Q Consensus 401 ~V~K~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iaf~RV~SGtL~~G~~v~vlg~~y~~~~~~~~~~~~~~~~I 480 (876)
+|||.+.+++.. .++++||+||+|++||+|++...+ ...+|
T Consensus 197 ~Vfd~~~d~~~G--------------------------~v~~~rV~sG~Lk~Gd~i~~~~~~-------------~~~~V 237 (600)
T PRK05433 197 LIFDSWYDNYRG--------------------------VVVLVRVVDGTLKKGDKIKMMSTG-------------KEYEV 237 (600)
T ss_pred EEEEEEecCCCc--------------------------eEEEEEEEcCEEecCCEEEEecCC-------------ceEEE
Confidence 999999887631 489999999999999999876411 24789
Q ss_pred eEEEEecCCceeecceeeCCCeEEEe-cCCc--eeeccceecCCCCc--ccCCCccccCCceeEEEEeeCCCccHHHHHH
Q 047363 481 QSLYLMMGQGLKPVASAKAGNVVAIR-GLGQ--QILKSATLSSTRNC--WPFSSMVFQVSPTLRVAIEPSDPADMGALMK 555 (876)
Q Consensus 481 ~~L~l~~G~~~~~v~~v~AGnIv~I~-GL~~--~i~k~~Tl~s~~~~--~~~~~~~~~~~Pvv~vaIEP~~~~d~~kL~~ 555 (876)
.+|+++.+ +..+++++.||+|+.+. |+++ .+..|+||++.... .+++++.+ ++|++.++|+|.+.+|.++|.+
T Consensus 238 ~~i~~~~~-~~~~v~~~~aGdIg~i~~~ik~~~~~~~Gdtl~~~~~~~~~~l~~~~~-~~P~v~~~i~p~~~~d~~kL~~ 315 (600)
T PRK05433 238 DEVGVFTP-KMVPVDELSAGEVGYIIAGIKDVRDARVGDTITLAKNPAEEPLPGFKE-VKPMVFAGLYPVDSDDYEDLRD 315 (600)
T ss_pred EEeeccCC-CceECcEEcCCCEEEEecccccccccCCCCEEECCCCccccCCCCCCC-CCcEEEEEEEECCccCHHHHHH
Confidence 99996655 89999999999998885 5432 26789999876543 46666665 6899999999999999999999
Q ss_pred HHHHHHhcCCceEEEEccCCcEEEEe-----cchhHHHHHHHHHHhhhccceEEEeCCeeeEEecCCC
Q 047363 556 GLRLLNRADPFVEVSVSSRGENVLAA-----AGEVHLERCIKDLKERFAKVSLEVSPPLVSYKETIEG 618 (876)
Q Consensus 556 gL~~L~~~DP~l~v~~~etGE~vl~g-----~GElHLe~~l~dL~~~fa~vei~vs~P~V~yrETI~~ 618 (876)
||.+|..+||++.+. .||+|.++.| +|+||||+++++|+++| |+++.+++|.|+||||+.+
T Consensus 316 aL~kL~~eD~sl~~~-~e~~~~l~~g~r~gf~G~lHlev~~erL~~e~-~~~v~~~~P~V~Yreti~~ 381 (600)
T PRK05433 316 ALEKLQLNDASLTYE-PETSQALGFGFRCGFLGLLHMEIIQERLEREF-DLDLITTAPSVVYEVTLTD 381 (600)
T ss_pred HHHHHHHhCCeEEEE-ecCCcceecceEeecHHHHHHHHHHHHHHHhh-CceEEEecCEEEEEEEEeC
Confidence 999999999999987 7899999999 99999999999999999 9999999999999999965
No 21
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=100.00 E-value=2.9e-50 Score=475.84 Aligned_cols=361 Identities=29% Similarity=0.467 Sum_probs=294.5
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEc--C---eEEEEEcC
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYK--D---YAINLIDS 81 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~--~---~~inlIDT 81 (876)
.+||||+|+||+|||||||+++|++. .|.++.+.. ..+++|+.+.|++||+|++++.+++.|. + +.++||||
T Consensus 1 ~~iRNi~IIGh~d~GKTTL~~rLl~~--~g~i~~~~~-~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDT 77 (595)
T TIGR01393 1 KNIRNFSIIAHIDHGKSTLADRLLEY--TGAISEREM-REQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDT 77 (595)
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHH--cCCCccccc-cccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEEC
Confidence 36999999999999999999999999 777775432 3468999999999999999999999885 3 88999999
Q ss_pred CCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccccccccChHHHHHHHHHHHHHh
Q 047363 82 PGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLISELKLTPLEAYNRLLRIVHEV 161 (876)
Q Consensus 82 PGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~~e~~~~~~~~~~~l~~~l~~v 161 (876)
|||.+|..++.++++.||++|+|+|+.+|++.++...|..+...++|+++|+||+|+...+ .++.. .++
T Consensus 78 PG~~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~~~~----~~~~~-------~el 146 (595)
T TIGR01393 78 PGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLPSAD----PERVK-------KEI 146 (595)
T ss_pred CCcHHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCCccC----HHHHH-------HHH
Confidence 9999999999999999999999999999999999988888888899999999999986432 11111 111
Q ss_pred hhhhhhccccccccccccccccCcccccccccccccccccccccCCCCcEEEEeccCCCccchHHHHHHHHHhcCCCHHH
Q 047363 162 NGIMSAYKSEKYLSDVDSLLSVPSEKLGDENLQFIEDDEEDTFQPQKGNVAFVCGLDGWGFSISEFAEFYATKLGASTAA 241 (876)
Q Consensus 162 n~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~~gnV~f~Sa~~Gw~ftl~~fa~~y~~k~~~~~~~ 241 (876)
...+. +. ...++++||+.|.+
T Consensus 147 ~~~lg-------------------------------------~~--~~~vi~vSAktG~G-------------------- 167 (595)
T TIGR01393 147 EEVIG-------------------------------------LD--ASEAILASAKTGIG-------------------- 167 (595)
T ss_pred HHHhC-------------------------------------CC--cceEEEeeccCCCC--------------------
Confidence 11100 00 01256666666532
Q ss_pred HHHhhcccceecCCCcccccccCCCCCCCCCCchhhhhchhHHHHHHHHcCCCCcHHHHHHHHHHcCCCCCHHHHhccCh
Q 047363 242 LEKALWGPRYFNPKTKMIVGKKGISTGTKARPMFVQFVLEPLWQVYQAALEPDGDKGVLEKVIKSFNLSIPRRELQNKDP 321 (876)
Q Consensus 242 l~k~LWGd~y~~~ktkk~~~~~~~~~~~~~~p~Fv~fiL~pi~~l~~~v~~~d~~~~~l~k~l~~~g~~l~~~~l~~~~~ 321 (876)
T Consensus 168 -------------------------------------------------------------------------------- 167 (595)
T TIGR01393 168 -------------------------------------------------------------------------------- 167 (595)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhhhcccccHHHHHHHHhhcCCCcccccchhhhcccccccccCCcccccccchhhhhhhhhcccCCCCCCCeEEE
Q 047363 322 KAVLQAVLSHWLPLSDAILSMVVKCIPDPISAQSYRISRLLPKREILDNDVDCNVLTEADFVRKSVEVCNSSPEAPCVAF 401 (876)
Q Consensus 322 k~ll~~v~~~~lp~~~~lLd~i~~~lPsP~~a~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~cd~~~~~plv~~ 401 (876)
.+.|++.+++++|+|.. + +++|+.++
T Consensus 168 --------------I~~Lle~I~~~lp~p~~--------------------------------------~--~~~pl~~~ 193 (595)
T TIGR01393 168 --------------IEEILEAIVKRVPPPKG--------------------------------------D--PDAPLKAL 193 (595)
T ss_pred --------------HHHHHHHHHHhCCCCCC--------------------------------------C--CCCCeEEE
Confidence 01346677778888831 1 56899999
Q ss_pred EEEeeeecccccCCCCCCccccccccCCCCCCCCccceEEEEEEEeCccCCCCEEEEeccccCCcchhhhccccceeEEe
Q 047363 402 VSKMFAVPIKMLPQRGSNGEILDNYADKGGNGESEECFLAFARIFSGVLYSGQRVFVLSALYDPLKVESMQKHIQEAELQ 481 (876)
Q Consensus 402 V~K~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iaf~RV~SGtL~~G~~v~vlg~~y~~~~~~~~~~~~~~~~I~ 481 (876)
|||.+.+++.. .++++||+||+|++||+|++...+ ...+|.
T Consensus 194 V~~~~~d~~~G--------------------------~v~~~rV~sG~lk~Gd~v~~~~~~-------------~~~~v~ 234 (595)
T TIGR01393 194 IFDSHYDNYRG--------------------------VVALVRVFEGTIKPGDKIRFMSTG-------------KEYEVD 234 (595)
T ss_pred EEEEEEeCCCc--------------------------EEEEEEEECCEEecCCEEEEecCC-------------CeeEEe
Confidence 99999987631 499999999999999999876421 247899
Q ss_pred EEEEecCCceeecceeeCCCeEEEe-cC---CceeeccceecCCCCc--ccCCCccccCCceeEEEEeeCCCccHHHHHH
Q 047363 482 SLYLMMGQGLKPVASAKAGNVVAIR-GL---GQQILKSATLSSTRNC--WPFSSMVFQVSPTLRVAIEPSDPADMGALMK 555 (876)
Q Consensus 482 ~L~l~~G~~~~~v~~v~AGnIv~I~-GL---~~~i~k~~Tl~s~~~~--~~~~~~~~~~~Pvv~vaIEP~~~~d~~kL~~ 555 (876)
+|+++.+.. .+++++.||||+.+. |+ ++ +..|+||++.... .+++++.+ ++|++.++|+|.+.+|.+||.+
T Consensus 235 ~i~~~~~~~-~~v~~~~aGdIg~i~~~~~~~~~-~~~Gdtl~~~~~~~~~~l~~~~~-~~P~v~~~i~p~~~~d~~kL~~ 311 (595)
T TIGR01393 235 EVGVFTPKL-TKTDELSAGEVGYIIAGIKDVSD-VRVGDTITHVKNPAKEPLPGFKE-VKPMVFAGLYPIDTEDYEDLRD 311 (595)
T ss_pred EEEEecCCc-eECCEEcCCCEEEEeccccccCc-cCCCCEEECCCCccccCCCCCcC-CCcEEEEEEEECCcccHHHHHH
Confidence 999777666 999999999998885 54 44 5789999876543 36666665 6899999999999999999999
Q ss_pred HHHHHHhcCCceEEEEccCCcEEEEe-----cchhHHHHHHHHHHhhhccceEEEeCCeeeEEecCCC
Q 047363 556 GLRLLNRADPFVEVSVSSRGENVLAA-----AGEVHLERCIKDLKERFAKVSLEVSPPLVSYKETIEG 618 (876)
Q Consensus 556 gL~~L~~~DP~l~v~~~etGE~vl~g-----~GElHLe~~l~dL~~~fa~vei~vs~P~V~yrETI~~ 618 (876)
||.+|..+||++.+.. ||+|.++.| +|+||||+++++|+++| |+++.+++|.|+||||+.+
T Consensus 312 aL~kL~~eD~sl~~~~-e~~~~l~~g~r~g~lG~lHlei~~erL~re~-~~~v~~~~P~V~Yreti~~ 377 (595)
T TIGR01393 312 ALEKLKLNDASLTYEP-ESSPALGFGFRCGFLGLLHMEIIQERLEREF-NLDLITTAPSVIYRVYLTN 377 (595)
T ss_pred HHHHHhccCCeEEEEe-cCCcccccccEEeeeeHHHHHHHHHHHHHHh-CCeeEEecCEEEEEEEecC
Confidence 9999999999999974 899988885 99999999999999999 9999999999999999965
No 22
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=100.00 E-value=3.3e-50 Score=436.67 Aligned_cols=388 Identities=29% Similarity=0.445 Sum_probs=313.2
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCcc
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMD 86 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~d 86 (876)
..+|||+|++|+|||||||++.|+.+ +|....+..-.-+++|+...|++|||||=+....+.|++++|||+|||||.|
T Consensus 3 ~~iRNIAIIAHVDHGKTTLVD~LLkQ--SGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHAD 80 (603)
T COG1217 3 EDIRNIAIIAHVDHGKTTLVDALLKQ--SGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHAD 80 (603)
T ss_pred cccceeEEEEEecCCcchHHHHHHhh--ccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCC
Confidence 47999999999999999999999999 8888765444458999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccccccccChHHHHHHHHHHHHHhhhhhh
Q 047363 87 FCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLISELKLTPLEAYNRLLRIVHEVNGIMS 166 (876)
Q Consensus 87 F~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~~e~~~~~~~~~~~l~~~l~~vn~~~~ 166 (876)
|..|+++.+...||++++|||.+|.++||+-+++.+.+.++++|+|+||+||+.+. |+++....-..+-.+.
T Consensus 81 FGGEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIVVvNKiDrp~Ar----p~~Vvd~vfDLf~~L~---- 152 (603)
T COG1217 81 FGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLKPIVVINKIDRPDAR----PDEVVDEVFDLFVELG---- 152 (603)
T ss_pred ccchhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHcCCCcEEEEeCCCCCCCC----HHHHHHHHHHHHHHhC----
Confidence 99999999999999999999999999999999999999999999999999999876 4444333222222111
Q ss_pred hccccccccccccccccCcccccccccccccccccccccCCCCcEEEEeccCCCccchHHHHHHHHHhcCCCHHHHHHhh
Q 047363 167 AYKSEKYLSDVDSLLSVPSEKLGDENLQFIEDDEEDTFQPQKGNVAFVCGLDGWGFSISEFAEFYATKLGASTAALEKAL 246 (876)
Q Consensus 167 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~~gnV~f~Sa~~Gw~ftl~~fa~~y~~k~~~~~~~l~k~L 246 (876)
..++++-| .|+|+||+.||+..-
T Consensus 153 ------------------------------A~deQLdF-----PivYAS~~~G~a~~~---------------------- 175 (603)
T COG1217 153 ------------------------------ATDEQLDF-----PIVYASARNGTASLD---------------------- 175 (603)
T ss_pred ------------------------------CChhhCCC-----cEEEeeccCceeccC----------------------
Confidence 11233444 589999999997210
Q ss_pred cccceecCCCcccccccCCCCCCCCCCchhhhhchhHHHHHHHHcCCCCcHHHHHHHHHHcCCCCCHHHHhccChHHHHH
Q 047363 247 WGPRYFNPKTKMIVGKKGISTGTKARPMFVQFVLEPLWQVYQAALEPDGDKGVLEKVIKSFNLSIPRRELQNKDPKAVLQ 326 (876)
Q Consensus 247 WGd~y~~~ktkk~~~~~~~~~~~~~~p~Fv~fiL~pi~~l~~~v~~~d~~~~~l~k~l~~~g~~l~~~~l~~~~~k~ll~ 326 (876)
| +...+ +
T Consensus 176 --------------------------~------------------~~~~~------------------~----------- 182 (603)
T COG1217 176 --------------------------P------------------EDEAD------------------D----------- 182 (603)
T ss_pred --------------------------c------------------ccccc------------------c-----------
Confidence 0 00001 0
Q ss_pred HhhhcccccHHHHHHHHhhcCCCcccccchhhhcccccccccCCcccccccchhhhhhhhhcccCCCCCCCeEEEEEEee
Q 047363 327 AVLSHWLPLSDAILSMVVKCIPDPISAQSYRISRLLPKREILDNDVDCNVLTEADFVRKSVEVCNSSPEAPCVAFVSKMF 406 (876)
Q Consensus 327 ~v~~~~lp~~~~lLd~i~~~lPsP~~a~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~cd~~~~~plv~~V~K~~ 406 (876)
..+|+++|++|+|.|.. + .++|+-+.|+-+-
T Consensus 183 ---------m~pLfe~I~~hvp~P~~--------------------------------------~--~d~PlQ~qvt~Ld 213 (603)
T COG1217 183 ---------MAPLFETILDHVPAPKG--------------------------------------D--LDEPLQMQVTQLD 213 (603)
T ss_pred ---------hhHHHHHHHHhCCCCCC--------------------------------------C--CCCCeEEEEEeec
Confidence 12688999999999941 1 6789999999987
Q ss_pred eecccccCCCCCCccccccccCCCCCCCCccceEEEEEEEeCccCCCCEEEEeccccCCcchhhhccccceeEEeEEEEe
Q 047363 407 AVPIKMLPQRGSNGEILDNYADKGGNGESEECFLAFARIFSGVLYSGQRVFVLSALYDPLKVESMQKHIQEAELQSLYLM 486 (876)
Q Consensus 407 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iaf~RV~SGtL~~G~~v~vlg~~y~~~~~~~~~~~~~~~~I~~L~l~ 486 (876)
+.+|- | .++.+|||+|++++||.|.++... . .....+|++|+-+
T Consensus 214 yn~y~-----------------G---------rIgigRi~~G~vk~~q~V~~i~~~--g--------~~~~gri~kllgf 257 (603)
T COG1217 214 YNSYV-----------------G---------RIGIGRIFRGTVKPNQQVALIKSD--G--------TTENGRITKLLGF 257 (603)
T ss_pred ccccc-----------------c---------eeEEEEEecCcccCCCeEEEEcCC--C--------cEEeeEEEeeeec
Confidence 77662 1 499999999999999999998622 1 2345899999999
Q ss_pred cCCceeecceeeCCCeEEEecCCceeeccceecCCCCcccCCCccccCCceeEEEEeeCC----Ccc-----HHHHHHHH
Q 047363 487 MGQGLKPVASAKAGNVVAIRGLGQQILKSATLSSTRNCWPFSSMVFQVSPTLRVAIEPSD----PAD-----MGALMKGL 557 (876)
Q Consensus 487 ~G~~~~~v~~v~AGnIv~I~GL~~~i~k~~Tl~s~~~~~~~~~~~~~~~Pvv~vaIEP~~----~~d-----~~kL~~gL 557 (876)
.|-++.++++|.|||||||.|+++ +..|+|+|+.....+++.+.. -+|.+.+..-.-+ -.+ -.++.+-|
T Consensus 258 ~GL~R~ei~eA~AGDIVaiaG~~~-~~igdTi~d~~~~~aLp~l~i-DePTlsMtf~vN~SPfAG~EGk~vTSR~i~dRL 335 (603)
T COG1217 258 LGLERIEIEEAEAGDIVAIAGLED-INIGDTICDPDNPEALPALSV-DEPTLSMTFSVNDSPFAGKEGKFVTSRQIRDRL 335 (603)
T ss_pred cceeeeecccccccCEEEEcCccc-ccccccccCCCCccCCCCccc-CCCceEEEEEecCCCCCCcCCceeeHHHHHHHH
Confidence 999999999999999999999998 567899999887777777766 5888888876432 222 34566667
Q ss_pred HHHHhcCCceEEEEc-cCCcEEEEecchhHHHHHHHHHHhhhccceEEEeCCeeeEEecCCCCCCCCc
Q 047363 558 RLLNRADPFVEVSVS-SRGENVLAAAGEVHLERCIKDLKERFAKVSLEVSPPLVSYKETIEGDTSNPL 624 (876)
Q Consensus 558 ~~L~~~DP~l~v~~~-etGE~vl~g~GElHLe~~l~dL~~~fa~vei~vs~P~V~yrETI~~~~~~~~ 624 (876)
.+=.+.+-++.|.-. +-....++|-|||||-++++.+|++ |.|+.||.|.|.||| |.+....|.
T Consensus 336 ~~El~~NValrVe~t~~pd~f~VsGRGELhLsILiE~MRRE--GfEl~VsrP~Vi~ke-idG~~~EP~ 400 (603)
T COG1217 336 NKELETNVALRVEETESPDAFEVSGRGELHLSILIENMRRE--GFELQVSRPEVIIKE-IDGVKCEPF 400 (603)
T ss_pred HHHhhhceeEEEeecCCCCeEEEeccceeehHHHHHHhhhc--ceEEEecCceEEEEe-cCCcCcCcc
Confidence 666677777777653 3478999999999999999999986 999999999999999 766544443
No 23
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.9e-49 Score=438.67 Aligned_cols=363 Identities=29% Similarity=0.442 Sum_probs=304.0
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcC---eEEEEEcCCC
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKD---YAINLIDSPG 83 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~---~~inlIDTPG 83 (876)
++|||++||+|+|||||||+|+|+.. +|.+... .+.-+++|....|++||||+++...++.|++ |.+|+|||||
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~--tg~i~~~-~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPG 134 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLEL--TGTIDNN-IGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPG 134 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHH--hCCCCCC-CchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCC
Confidence 89999999999999999999999999 6677643 3566899999999999999999999999998 9999999999
Q ss_pred CccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccccccccChHHHHHHHHHHHHHhhh
Q 047363 84 HMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLISELKLTPLEAYNRLLRIVHEVNG 163 (876)
Q Consensus 84 h~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~~e~~~~~~~~~~~l~~~l~~vn~ 163 (876)
|+||..|+.+++..|||||+||||.+|++.||...+..|.+.++.+|.|+||+|++.++ |+++..++...++
T Consensus 135 HvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp~ad----pe~V~~q~~~lF~---- 206 (650)
T KOG0462|consen 135 HVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLPSAD----PERVENQLFELFD---- 206 (650)
T ss_pred cccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCeEEEeeeccCCCCCC----HHHHHHHHHHHhc----
Confidence 99999999999999999999999999999999999999999999999999999999987 4444433332222
Q ss_pred hhhhccccccccccccccccCcccccccccccccccccccccCCCCcEEEEeccCCCccchHHHHHHHHHhcCCCHHHHH
Q 047363 164 IMSAYKSEKYLSDVDSLLSVPSEKLGDENLQFIEDDEEDTFQPQKGNVAFVCGLDGWGFSISEFAEFYATKLGASTAALE 243 (876)
Q Consensus 164 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~~gnV~f~Sa~~Gw~ftl~~fa~~y~~k~~~~~~~l~ 243 (876)
+.++ .++++||+.||+-
T Consensus 207 ----------------------------------------~~~~--~~i~vSAK~G~~v--------------------- 223 (650)
T KOG0462|consen 207 ----------------------------------------IPPA--EVIYVSAKTGLNV--------------------- 223 (650)
T ss_pred ----------------------------------------CCcc--ceEEEEeccCccH---------------------
Confidence 0111 4788998888740
Q ss_pred HhhcccceecCCCcccccccCCCCCCCCCCchhhhhchhHHHHHHHHcCCCCcHHHHHHHHHHcCCCCCHHHHhccChHH
Q 047363 244 KALWGPRYFNPKTKMIVGKKGISTGTKARPMFVQFVLEPLWQVYQAALEPDGDKGVLEKVIKSFNLSIPRRELQNKDPKA 323 (876)
Q Consensus 244 k~LWGd~y~~~ktkk~~~~~~~~~~~~~~p~Fv~fiL~pi~~l~~~v~~~d~~~~~l~k~l~~~g~~l~~~~l~~~~~k~ 323 (876)
+
T Consensus 224 ----------------------------------------------------~--------------------------- 224 (650)
T KOG0462|consen 224 ----------------------------------------------------E--------------------------- 224 (650)
T ss_pred ----------------------------------------------------H---------------------------
Confidence 1
Q ss_pred HHHHhhhcccccHHHHHHHHhhcCCCcccccchhhhcccccccccCCcccccccchhhhhhhhhcccCCCCCCCeEEEEE
Q 047363 324 VLQAVLSHWLPLSDAILSMVVKCIPDPISAQSYRISRLLPKREILDNDVDCNVLTEADFVRKSVEVCNSSPEAPCVAFVS 403 (876)
Q Consensus 324 ll~~v~~~~lp~~~~lLd~i~~~lPsP~~a~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~cd~~~~~plv~~V~ 403 (876)
.+|++|++++|.|.. ..++|+.+.+|
T Consensus 225 --------------~lL~AII~rVPpP~~----------------------------------------~~d~plr~Lif 250 (650)
T KOG0462|consen 225 --------------ELLEAIIRRVPPPKG----------------------------------------IRDAPLRMLIF 250 (650)
T ss_pred --------------HHHHHHHhhCCCCCC----------------------------------------CCCcchHHHhh
Confidence 368899999999941 15789999999
Q ss_pred EeeeecccccCCCCCCccccccccCCCCCCCCccceEEEEEEEeCccCCCCEEEEeccccCCcchhhhccccceeEEeEE
Q 047363 404 KMFAVPIKMLPQRGSNGEILDNYADKGGNGESEECFLAFARIFSGVLYSGQRVFVLSALYDPLKVESMQKHIQEAELQSL 483 (876)
Q Consensus 404 K~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iaf~RV~SGtL~~G~~v~vlg~~y~~~~~~~~~~~~~~~~I~~L 483 (876)
.++.|.+.. .++++||.+|.+++||+|..+... + ..+++.-.+
T Consensus 251 ds~yD~y~G--------------------------~I~~vrv~~G~vrkGdkV~~~~t~------~-----~yev~~vgv 293 (650)
T KOG0462|consen 251 DSEYDEYRG--------------------------VIALVRVVDGVVRKGDKVQSAATG------K-----SYEVKVVGV 293 (650)
T ss_pred hhhhhhhcc--------------------------eEEEEEEeeeeeecCCEEEEeecC------c-----ceEeEEeEE
Confidence 999887731 499999999999999999876321 1 134566677
Q ss_pred EEecCCceeecceeeCCCeEEEec-CCceeeccceecCCCC---cccCCCccccCCceeEEEEeeCCCccHHHHHHHHHH
Q 047363 484 YLMMGQGLKPVASAKAGNVVAIRG-LGQQILKSATLSSTRN---CWPFSSMVFQVSPTLRVAIEPSDPADMGALMKGLRL 559 (876)
Q Consensus 484 ~l~~G~~~~~v~~v~AGnIv~I~G-L~~~i~k~~Tl~s~~~---~~~~~~~~~~~~Pvv~vaIEP~~~~d~~kL~~gL~~ 559 (876)
+.+.+-+..+++...+|.|++--| ++.. ..|+|++.... .++++... +..|++.+..-|.+.+|...|-.++.+
T Consensus 294 m~p~~~~~~~l~agqvGyIi~~mr~~~ea-~IGdTi~~~~~~~~v~tl~~~~-~~~pMvFvg~fP~dgsd~~~l~~a~er 371 (650)
T KOG0462|consen 294 MRPEMTPVVELDAGQVGYIICNMRNVKEA-QIGDTIAHKSVTKAVETLPGFE-PTKPMVFVGLFPLDGSDYETLRDAIER 371 (650)
T ss_pred eccCceeeeeecccccceeEecccccccc-cccceeeecccCcccCcCCCCC-CCcceEEeccccCccchhhhHHHHHHH
Confidence 777777777788888888888888 7774 46899987542 23444443 367999999999999999999999999
Q ss_pred HHhcCCceEEEEccCC----cEEEEecchhHHHHHHHHHHhhhccceEEEeCCeeeEEecC
Q 047363 560 LNRADPFVEVSVSSRG----ENVLAAAGEVHLERCIKDLKERFAKVSLEVSPPLVSYKETI 616 (876)
Q Consensus 560 L~~~DP~l~v~~~etG----E~vl~g~GElHLe~~l~dL~~~fa~vei~vs~P~V~yrETI 616 (876)
|+.+|+++.+..+.+| -+.+.+.|.|||++.+++|+++| |.++.+++|.|+||=-.
T Consensus 372 L~lnd~sv~v~~~~s~aLg~gwr~gflG~LHm~Vf~erle~Ey-g~elivt~PtV~Yr~~~ 431 (650)
T KOG0462|consen 372 LVLNDESVTVIKESSGALGQGWRLGFLGLLHMEVFIERLEREY-GAELIVTPPTVPYRVVY 431 (650)
T ss_pred HhcccccceeeecCCcccccceEeeccceeeHHHHHHHHHHhc-CceeeecCCcceEEEEe
Confidence 9999999999987655 46888999999999999999999 99999999999999554
No 24
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=2.7e-44 Score=391.88 Aligned_cols=368 Identities=30% Similarity=0.444 Sum_probs=295.4
Q ss_pred CCCCCCCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEc-----CeEE
Q 047363 2 GDSDTRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYK-----DYAI 76 (876)
Q Consensus 2 ~~~~~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~-----~~~i 76 (876)
.....++|||++|++|.|||||||+++|+.. +|.++.+. -+..++|++..|++|||||++..+.+.|+ .|.+
T Consensus 2 ~~~~~~~IRNFsIIAHIDHGKSTLaDRlle~--t~~~~~Re-m~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~l 78 (603)
T COG0481 2 TFTPQKNIRNFSIIAHIDHGKSTLADRLLEL--TGGLSERE-MRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVL 78 (603)
T ss_pred CccchhhccceEEEEEecCCcchHHHHHHHH--hcCcChHH-HHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEE
Confidence 3456689999999999999999999999999 77776553 23358999999999999999999999987 3999
Q ss_pred EEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccccccccChHHHHHHHHH
Q 047363 77 NLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLISELKLTPLEAYNRLLR 156 (876)
Q Consensus 77 nlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~~e~~~~~~~~~~~l~~ 156 (876)
||||||||+||.-|+.+++..|.||++||||+.|++.||..-...+.+.++-+|-|+||+|++.++ |+.+.+.++.
T Consensus 79 nlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~~LeIiPViNKIDLP~Ad----pervk~eIe~ 154 (603)
T COG0481 79 NLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPAAD----PERVKQEIED 154 (603)
T ss_pred EEcCCCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHcCcEEEEeeecccCCCCC----HHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999887 5555444433
Q ss_pred HHHHhhhhhhhccccccccccccccccCcccccccccccccccccccccCCCCcEEEEeccCCCccchHHHHHHHHHhcC
Q 047363 157 IVHEVNGIMSAYKSEKYLSDVDSLLSVPSEKLGDENLQFIEDDEEDTFQPQKGNVAFVCGLDGWGFSISEFAEFYATKLG 236 (876)
Q Consensus 157 ~l~~vn~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~~gnV~f~Sa~~Gw~ftl~~fa~~y~~k~~ 236 (876)
++. - + ....+-+||+.|.+
T Consensus 155 ~iG-------i----------d-----------------------------~~dav~~SAKtG~g--------------- 173 (603)
T COG0481 155 IIG-------I----------D-----------------------------ASDAVLVSAKTGIG--------------- 173 (603)
T ss_pred HhC-------C----------C-----------------------------cchheeEecccCCC---------------
Confidence 222 0 0 00123344444311
Q ss_pred CCHHHHHHhhcccceecCCCcccccccCCCCCCCCCCchhhhhchhHHHHHHHHcCCCCcHHHHHHHHHHcCCCCCHHHH
Q 047363 237 ASTAALEKALWGPRYFNPKTKMIVGKKGISTGTKARPMFVQFVLEPLWQVYQAALEPDGDKGVLEKVIKSFNLSIPRREL 316 (876)
Q Consensus 237 ~~~~~l~k~LWGd~y~~~ktkk~~~~~~~~~~~~~~p~Fv~fiL~pi~~l~~~v~~~d~~~~~l~k~l~~~g~~l~~~~l 316 (876)
T Consensus 174 -------------------------------------------------------------------------------- 173 (603)
T COG0481 174 -------------------------------------------------------------------------------- 173 (603)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hccChHHHHHHhhhcccccHHHHHHHHhhcCCCcccccchhhhcccccccccCCcccccccchhhhhhhhhcccCCCCCC
Q 047363 317 QNKDPKAVLQAVLSHWLPLSDAILSMVVKCIPDPISAQSYRISRLLPKREILDNDVDCNVLTEADFVRKSVEVCNSSPEA 396 (876)
Q Consensus 317 ~~~~~k~ll~~v~~~~lp~~~~lLd~i~~~lPsP~~a~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~cd~~~~~ 396 (876)
...+|+.|++.+|.|.. ++++
T Consensus 174 -------------------I~~iLe~Iv~~iP~P~g----------------------------------------~~~~ 194 (603)
T COG0481 174 -------------------IEDVLEAIVEKIPPPKG----------------------------------------DPDA 194 (603)
T ss_pred -------------------HHHHHHHHHhhCCCCCC----------------------------------------CCCC
Confidence 11468888999999941 1789
Q ss_pred CeEEEEEEeeeecccccCCCCCCccccccccCCCCCCCCccceEEEEEEEeCccCCCCEEEEeccccCCcchhhhccccc
Q 047363 397 PCVAFVSKMFAVPIKMLPQRGSNGEILDNYADKGGNGESEECFLAFARIFSGVLYSGQRVFVLSALYDPLKVESMQKHIQ 476 (876)
Q Consensus 397 plv~~V~K~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iaf~RV~SGtL~~G~~v~vlg~~y~~~~~~~~~~~~~ 476 (876)
|+-|.+|.-+.|++.. -++++||+.|++++||+|++++.+ +
T Consensus 195 pLkALifDS~yD~Y~G--------------------------Vv~~vRi~dG~ik~gdki~~m~tg-------------~ 235 (603)
T COG0481 195 PLKALIFDSWYDNYLG--------------------------VVVLVRIFDGTLKKGDKIRMMSTG-------------K 235 (603)
T ss_pred cceEEEEeccccccce--------------------------EEEEEEEeeceecCCCEEEEEecC-------------C
Confidence 9999999999988742 489999999999999999998522 2
Q ss_pred eeEEeEEEEecCCceeecceeeCCCeEEEe-cCCce--eeccceecCC--CCcccCCCccccCCceeEEEEeeCCCccHH
Q 047363 477 EAELQSLYLMMGQGLKPVASAKAGNVVAIR-GLGQQ--ILKSATLSST--RNCWPFSSMVFQVSPTLRVAIEPSDPADMG 551 (876)
Q Consensus 477 ~~~I~~L~l~~G~~~~~v~~v~AGnIv~I~-GL~~~--i~k~~Tl~s~--~~~~~~~~~~~~~~Pvv~vaIEP~~~~d~~ 551 (876)
+-.|.++.++.- ....++++.||+++-+. |+++. ..-|+|++.. +...++++.+- .+|++.+++-|.+.+|.+
T Consensus 236 ~y~V~evGvftP-~~~~~~~L~aGeVG~~~a~iK~v~d~~VGDTiT~~~~p~~e~LpGfk~-~~P~Vf~GlyPid~~dye 313 (603)
T COG0481 236 EYEVDEVGIFTP-KMVKVDELKAGEVGYIIAGIKDVRDARVGDTITLASNPATEPLPGFKE-VKPMVFAGLYPVDSDDYE 313 (603)
T ss_pred EEEEEEEeeccC-CccccccccCCceeEEEEeeeecccCcccceEeccCCCccccCCCCCc-CCceEEEeecccChhHHH
Confidence 356777777665 77889999999987553 44321 3558888743 33456666655 689999999999999999
Q ss_pred HHHHHHHHHHhcCCceEEEEccC---Cc-EEEEecchhHHHHHHHHHHhhhccceEEEeCCeeeEEecCCC
Q 047363 552 ALMKGLRLLNRADPFVEVSVSSR---GE-NVLAAAGEVHLERCIKDLKERFAKVSLEVSPPLVSYKETIEG 618 (876)
Q Consensus 552 kL~~gL~~L~~~DP~l~v~~~et---GE-~vl~g~GElHLe~~l~dL~~~fa~vei~vs~P~V~yrETI~~ 618 (876)
.|.+||.+|.-.|.++.+.-+.| |- .-..-.|-||||++.+||+++| ++++....|.|.|+=..+.
T Consensus 314 ~LrdAleKL~LNDasl~~E~EtS~ALGfGfRcGFLGlLHmeiiqERLeREf-~ldlI~TaPsV~Y~v~~~~ 383 (603)
T COG0481 314 DLRDALEKLQLNDASLTYEPETSQALGFGFRCGFLGLLHMEIIQERLEREF-DLDLITTAPSVVYKVELTD 383 (603)
T ss_pred HHHHHHHhcccccceeeeccccchhccCceeehhhhHHHHHHHHHHHHHhh-CcceEecCCceEEEEEEcC
Confidence 99999999999999998876422 32 2334489999999999999999 9999999999999977643
No 25
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.3e-44 Score=389.96 Aligned_cols=440 Identities=23% Similarity=0.315 Sum_probs=316.6
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcc------cccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEc
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLH------PKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLID 80 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~------~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlID 80 (876)
.+-|+++||.|+|+|||||++.|+.. .|+|. .+..++.+.+|++..|++|||++.++.+++.|.++.+||+|
T Consensus 10 ~rRRTFAIISHPDAGKTTlTEkLLlf--GgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLD 87 (528)
T COG4108 10 ARRRTFAIISHPDAGKTTLTEKLLLF--GGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLD 87 (528)
T ss_pred hhhcceeEEecCCCCcccHHHHHHHh--cchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccC
Confidence 45699999999999999999999988 66664 23334457799999999999999999999999999999999
Q ss_pred CCCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccccccccChHHHHHHHHHHHHH
Q 047363 81 SPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLISELKLTPLEAYNRLLRIVHE 160 (876)
Q Consensus 81 TPGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~~e~~~~~~~~~~~l~~~l~~ 160 (876)
||||.||+.++.+.|.++|.||.|+|+..|+.+||..+++-|+.+++|++-||||+||...+ |-++...+...|.
T Consensus 88 TPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~TFiNKlDR~~rd----P~ELLdEiE~~L~- 162 (528)
T COG4108 88 TPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTFINKLDREGRD----PLELLDEIEEELG- 162 (528)
T ss_pred CCCccccchhHHHHHHhhheeeEEEecccCccHHHHHHHHHHhhcCCceEEEeeccccccCC----hHHHHHHHHHHhC-
Confidence 99999999999999999999999999999999999999999999999999999999999765 6666665555443
Q ss_pred hhhhhhhccccccccccccccccCcccccccccccccccccccccCCCCcEE-EEeccCCCccchHHHHHHHHHhcCCCH
Q 047363 161 VNGIMSAYKSEKYLSDVDSLLSVPSEKLGDENLQFIEDDEEDTFQPQKGNVA-FVCGLDGWGFSISEFAEFYATKLGAST 239 (876)
Q Consensus 161 vn~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~~gnV~-f~Sa~~Gw~ftl~~fa~~y~~k~~~~~ 239 (876)
+...+.. .|+|.+. .|.++.+ -.++.|. |.+...+-.... .
T Consensus 163 i~~~Pit---------------WPIG~gk-~F~Gvy~--------l~~~~v~~y~~~~~~~~~~~----~---------- 204 (528)
T COG4108 163 IQCAPIT---------------WPIGMGK-DFKGVYH--------LYNDEVELYESGHTDQERRA----D---------- 204 (528)
T ss_pred cceeccc---------------ccccCCc-ccceeee--------eccCEEEEeccCCCcccccc----c----------
Confidence 2222211 1555543 2333322 1111111 111100000000 0
Q ss_pred HHHHHhhcccceecCCCcccccccCCCCCCCCCCchhhhhchhHHHHHHHHcCCCCcHHHHHHHHHHcCCCCCHHHHhcc
Q 047363 240 AALEKALWGPRYFNPKTKMIVGKKGISTGTKARPMFVQFVLEPLWQVYQAALEPDGDKGVLEKVIKSFNLSIPRRELQNK 319 (876)
Q Consensus 240 ~~l~k~LWGd~y~~~ktkk~~~~~~~~~~~~~~p~Fv~fiL~pi~~l~~~v~~~d~~~~~l~k~l~~~g~~l~~~~l~~~ 319 (876)
...+ ...|.--++.=+++| +...+ +-+++.. .+ ..-
T Consensus 205 ------------------------~~~~--~~~p~~~~~l~~~~~---~~~~e---e~EL~~~----a~--------~~F 240 (528)
T COG4108 205 ------------------------IVKG--LDNPELDALLGEDLA---EQLRE---ELELVQG----AG--------NEF 240 (528)
T ss_pred ------------------------cccC--CCChhHHhhhchHHH---HHHHH---HHHHHHh----hc--------ccc
Confidence 0000 001211111112221 11111 0011111 11 123
Q ss_pred ChHHHHHHhhhcccccH-------HHHHHHHhhcCCCcccccchhhhcccccccccCCcccccccchhhhhhhhhcccCC
Q 047363 320 DPKAVLQAVLSHWLPLS-------DAILSMVVKCIPDPISAQSYRISRLLPKREILDNDVDCNVLTEADFVRKSVEVCNS 392 (876)
Q Consensus 320 ~~k~ll~~v~~~~lp~~-------~~lLd~i~~~lPsP~~a~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~cd~ 392 (876)
|....|.+.|.++|-+| +.+|+.++++.|+|...+...- ..+.
T Consensus 241 d~~~fl~G~~TPVFFGSAl~NFGV~~~L~~~~~~AP~P~~~~a~~~----------------------------~v~p-- 290 (528)
T COG4108 241 DLEAFLAGELTPVFFGSALGNFGVDHFLDALVDWAPSPRARQADTR----------------------------EVEP-- 290 (528)
T ss_pred CHHHHhcCCccceEehhhhhccCHHHHHHHHHhhCCCCCcccCCcC----------------------------cccC--
Confidence 55667778888887764 8999999999999975432110 0111
Q ss_pred CCCCCeEEEEEEeeeecccccCCCCCCccccccccCCCCCCCCccceEEEEEEEeCccCCCCEEEEeccccCCcchhhhc
Q 047363 393 SPEAPCVAFVSKMFAVPIKMLPQRGSNGEILDNYADKGGNGESEECFLAFARIFSGVLYSGQRVFVLSALYDPLKVESMQ 472 (876)
Q Consensus 393 ~~~~plv~~V~K~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iaf~RV~SGtL~~G~~v~vlg~~y~~~~~~~~~ 472 (876)
.+..+.+||||+-+.-. +.....+||.||.||.+.+|++|.... ++
T Consensus 291 -~e~kfsGFVFKIQANMD-----------------------p~HRDRIAFmRv~SGkferGMkv~h~r------tG---- 336 (528)
T COG4108 291 -TEDKFSGFVFKIQANMD-----------------------PKHRDRIAFMRVCSGKFERGMKVTHVR------TG---- 336 (528)
T ss_pred -CCCccceEEEEEEcCCC-----------------------cccccceeEEEeccccccCCceeeeee------cC----
Confidence 12348999999965432 233446999999999999999997653 22
Q ss_pred cccceeEEeEEEEecCCceeecceeeCCCeEEEecCCceeeccceecCCCCcccCCCccccCCceeEEEEeeCCCccHHH
Q 047363 473 KHIQEAELQSLYLMMGQGLKPVASAKAGNVVAIRGLGQQILKSATLSSTRNCWPFSSMVFQVSPTLRVAIEPSDPADMGA 552 (876)
Q Consensus 473 ~~~~~~~I~~L~l~~G~~~~~v~~v~AGnIv~I~GL~~~i~k~~Tl~s~~~~~~~~~~~~~~~Pvv~vaIEP~~~~d~~k 552 (876)
+..+++.-..+|+++++.|++|.||||+||..- +.+..|+|++.. ....|.+++.. .|=+...|..+||....+
T Consensus 337 ---K~~~ls~~~~f~A~dRe~ve~A~aGDIIGl~nh-G~~~IGDT~t~G-e~l~f~giP~F-aPE~frrvr~kd~~K~Kq 410 (528)
T COG4108 337 ---KDVKLSDALTFMAQDRETVEEAYAGDIIGLHNH-GTIQIGDTFTEG-EKLKFTGIPNF-APELFRRVRLKDPLKQKQ 410 (528)
T ss_pred ---CceEecchHhhhhhhhhhhhhccCCCeEeccCC-CceeecceeecC-ceeeecCCCCC-CHHHHHHHhcCChHHHHH
Confidence 347888999999999999999999999999864 346779999765 55677777664 677777788899999999
Q ss_pred HHHHHHHHHhcCCceEEEE-ccCCcEEEEecchhHHHHHHHHHHhhhccceEEEeC
Q 047363 553 LMKGLRLLNRADPFVEVSV-SSRGENVLAAAGEVHLERCIKDLKERFAKVSLEVSP 607 (876)
Q Consensus 553 L~~gL~~L~~~DP~l~v~~-~etGE~vl~g~GElHLe~~l~dL~~~fa~vei~vs~ 607 (876)
|.+||..|++|-- +++.. ..+++.||...|.||+|++.++|+++| ++|+...+
T Consensus 411 l~Kgl~QL~eEGa-vQ~f~p~~~~d~IlGAVG~LQFeV~~~RL~~EY-~ve~~~e~ 464 (528)
T COG4108 411 LKKGLEQLAEEGA-VQVFKPLDGNDLILGAVGQLQFEVVQARLKNEY-NVEAVFEP 464 (528)
T ss_pred HHHHHHHHhhcCe-eEEEecCCCCCceEEeeeeeehHHHHHHHHhhh-CCeEEEee
Confidence 9999999999875 55655 468999999999999999999999999 99988754
No 26
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=100.00 E-value=4.1e-41 Score=352.58 Aligned_cols=199 Identities=61% Similarity=0.974 Sum_probs=181.1
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEc----------CeEEEEE
Q 047363 10 RNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYK----------DYAINLI 79 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~----------~~~inlI 79 (876)
|||+|+||+|||||||+++|+.. +|.++....|+.+++|+.+.|++||+|++++.+++.|. ++.++||
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~--~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~ii 78 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLAS--AGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLI 78 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--cCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEE
Confidence 89999999999999999999999 78888777788899999999999999999999999887 7899999
Q ss_pred cCCCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccccccccChHHHHHHHHHHHH
Q 047363 80 DSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLISELKLTPLEAYNRLLRIVH 159 (876)
Q Consensus 80 DTPGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~~e~~~~~~~~~~~l~~~l~ 159 (876)
|||||.+|..++..+++.+|++|+|||+.+|++.+++.+++++...++|+++|+||+|+.+.+++++++++|.++.++++
T Consensus 79 DTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~ilviNKiD~~~~e~~~~~~~~~~~~~~ii~ 158 (222)
T cd01885 79 DSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRLILELKLSPEEAYQRLARIIE 158 (222)
T ss_pred CCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCcchhhhcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhccccccccccccccccCcccccccccccccccccccccCCCCcEEEEeccCCCccchHHHHHHH
Q 047363 160 EVNGIMSAYKSEKYLSDVDSLLSVPSEKLGDENLQFIEDDEEDTFQPQKGNVAFVCGLDGWGFSISEFAEFY 231 (876)
Q Consensus 160 ~vn~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~~gnV~f~Sa~~Gw~ftl~~fa~~y 231 (876)
++|.++..+....... ..++.+.|+|.+|||+|+|+++||+|++.+||++|
T Consensus 159 ~~n~~i~~~~~~~~~~---------------------~~~~~~~~~p~~gnv~f~S~~~gw~f~~~~f~~~~ 209 (222)
T cd01885 159 QVNAIIGTYADEEFKE---------------------KDDEKWYFSPQKGNVAFGSALHGWGFTIIKFARIY 209 (222)
T ss_pred HHhHHHHhcccccccc---------------------cCcCCcEEeeCCCcEEEEecccCEEeccccccchH
Confidence 9999987753211100 01235689999999999999999999999999887
No 27
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.97 E-value=6.3e-31 Score=283.89 Aligned_cols=259 Identities=28% Similarity=0.404 Sum_probs=191.7
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhhCCCCcccc--cCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccch
Q 047363 11 NISILAHVDHGKTTLADHLIAATGGGLLHPK--LAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFC 88 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~--~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~ 88 (876)
||+|+||+|||||||+++|++. .|.+.+. ..+..+++|+.+.|++||+|+.++..++.|+++.++|||||||.+|.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~--~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~ 78 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYY--TGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFT 78 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH--cCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHH
Confidence 7999999999999999999998 6666532 12335789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccccccccChHHHHHHHHHHHHHhhhhhhhc
Q 047363 89 SEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLISELKLTPLEAYNRLLRIVHEVNGIMSAY 168 (876)
Q Consensus 89 ~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~~e~~~~~~~~~~~l~~~l~~vn~~~~s~ 168 (876)
.++..+++.+|++|+|||+.+|+..+++.+|+.+.+.++|+++|+||+|+..+++ +++...++..+.. ..+..
T Consensus 79 ~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~a~~----~~~~~~l~~~l~~-~~~~~-- 151 (270)
T cd01886 79 IEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRTGADF----FRVVEQIREKLGA-NPVPL-- 151 (270)
T ss_pred HHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCH----HHHHHHHHHHhCC-CceEE--
Confidence 9999999999999999999999999999999999999999999999999987653 2333333322221 10000
Q ss_pred cccccccccccccccCccccccccccccccccc--ccccCCCCcEEEEeccCCCccchHHHHHHHHHhcCCCHHHHHHhh
Q 047363 169 KSEKYLSDVDSLLSVPSEKLGDENLQFIEDDEE--DTFQPQKGNVAFVCGLDGWGFSISEFAEFYATKLGASTAALEKAL 246 (876)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~f~p~~gnV~f~Sa~~Gw~ftl~~fa~~y~~k~~~~~~~l~k~L 246 (876)
.-|.+.. ..|.++++.... +.|...+|.. ++...++..+
T Consensus 152 -------------~~Pisa~-~~f~g~vd~~~~~a~~~~~~~~~~----------~~~~~ip~~~--------------- 192 (270)
T cd01886 152 -------------QLPIGEE-DDFRGVVDLIEMKALYWDGELGEK----------IEETEIPEDL--------------- 192 (270)
T ss_pred -------------EeccccC-CCceEEEEccccEEEecccCCCce----------eEEecCCHHH---------------
Confidence 0133332 245555554322 2221111110 1111111111
Q ss_pred cccceecCCCcccccccCCCCCCCCCCchhhhhchhHHHHHHHHcCCCCcHHHHHHHHHHcCCCCCHHHHhccChHHHHH
Q 047363 247 WGPRYFNPKTKMIVGKKGISTGTKARPMFVQFVLEPLWQVYQAALEPDGDKGVLEKVIKSFNLSIPRRELQNKDPKAVLQ 326 (876)
Q Consensus 247 WGd~y~~~ktkk~~~~~~~~~~~~~~p~Fv~fiL~pi~~l~~~v~~~d~~~~~l~k~l~~~g~~l~~~~l~~~~~k~ll~ 326 (876)
...+-+-.-++++++++.|++ +|++|++ |..++.++|....++.+.+
T Consensus 193 -----------------------------~~~~~~~r~~l~e~vae~dd~--L~e~yl~--~~~~~~~el~~~l~~~~~~ 239 (270)
T cd01886 193 -----------------------------LEEAEEAREELIETLAEFDDE--LMEKYLE--GEEITEEEIKAAIRKGTIA 239 (270)
T ss_pred -----------------------------HHHHHHHHHHHHHHHhcCCHH--HHHHHhC--CCCCCHHHHHHHHHHHHHc
Confidence 111111122678899998877 9999998 6789999999989999999
Q ss_pred HhhhcccccH-------HHHHHHHhhcCCCc
Q 047363 327 AVLSHWLPLS-------DAILSMVVKCIPDP 350 (876)
Q Consensus 327 ~v~~~~lp~~-------~~lLd~i~~~lPsP 350 (876)
+.+.|+|++| +.|||+|++++|||
T Consensus 240 ~~~~PV~~gSa~~~~Gi~~lld~i~~~~p~p 270 (270)
T cd01886 240 NKIVPVLCGSAFKNKGVQPLLDAVVDYLPSP 270 (270)
T ss_pred CcEEEEEeCcCCCCcCHHHHHHHHHHhcCCC
Confidence 8888888885 99999999999998
No 28
>CHL00071 tufA elongation factor Tu
Probab=99.97 E-value=3e-29 Score=286.63 Aligned_cols=296 Identities=23% Similarity=0.319 Sum_probs=216.8
Q ss_pred CCCCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCC
Q 047363 5 DTRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGH 84 (876)
Q Consensus 5 ~~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh 84 (876)
+....+||+++||+|||||||+++|++. .|.++.........+|..+.|++||+|+.++...+.++++.++|+|||||
T Consensus 8 ~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~--~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh 85 (409)
T CHL00071 8 RKKPHVNIGTIGHVDHGKTTLTAAITMT--LAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGH 85 (409)
T ss_pred CCCCeEEEEEECCCCCCHHHHHHHHHHH--hCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCCh
Confidence 3456799999999999999999999998 66665433334457899999999999999999999888999999999999
Q ss_pred ccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCC-cEEEEecccccccccccChHHHHHHHHHHHHHhhh
Q 047363 85 MDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLT-PCLVLNKIDRLISELKLTPLEAYNRLLRIVHEVNG 163 (876)
Q Consensus 85 ~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip-~ilviNKiD~~~~e~~~~~~~~~~~l~~~l~~vn~ 163 (876)
.+|...+.++++.+|++++|||+.+|+..|++.++..+...++| +|+|+||+|+...+ +.++.+ ..++..
T Consensus 86 ~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~~------~~~~~~---~~~l~~ 156 (409)
T CHL00071 86 ADYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDDE------ELLELV---ELEVRE 156 (409)
T ss_pred HHHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCCHH------HHHHHH---HHHHHH
Confidence 99999999999999999999999999999999999999999999 56889999997422 222222 123333
Q ss_pred hhhhccccccccccccccccCcccccccccccccccccccccCCCCcEEEEeccCCCccchHHHHHHHHHhcCCCHHHHH
Q 047363 164 IMSAYKSEKYLSDVDSLLSVPSEKLGDENLQFIEDDEEDTFQPQKGNVAFVCGLDGWGFSISEFAEFYATKLGASTAALE 243 (876)
Q Consensus 164 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~~gnV~f~Sa~~Gw~ftl~~fa~~y~~k~~~~~~~l~ 243 (876)
.+..+ -|.+..-.+++.||+.||.....
T Consensus 157 ~l~~~----------------------------------~~~~~~~~ii~~Sa~~g~n~~~~------------------ 184 (409)
T CHL00071 157 LLSKY----------------------------------DFPGDDIPIVSGSALLALEALTE------------------ 184 (409)
T ss_pred HHHHh----------------------------------CCCCCcceEEEcchhhccccccc------------------
Confidence 22211 01111124678899988741100
Q ss_pred HhhcccceecCCCcccccccCCCCCCCCCCchhhhhchhHHHHHHHHcCCCCcHHHHHHHHHHcCCCCCHHHHhccChHH
Q 047363 244 KALWGPRYFNPKTKMIVGKKGISTGTKARPMFVQFVLEPLWQVYQAALEPDGDKGVLEKVIKSFNLSIPRRELQNKDPKA 323 (876)
Q Consensus 244 k~LWGd~y~~~ktkk~~~~~~~~~~~~~~p~Fv~fiL~pi~~l~~~v~~~d~~~~~l~k~l~~~g~~l~~~~l~~~~~k~ 323 (876)
.+.+ . . |
T Consensus 185 ----------------------------~~~~---------------~----~-----------~--------------- 191 (409)
T CHL00071 185 ----------------------------NPKI---------------K----R-----------G--------------- 191 (409)
T ss_pred ----------------------------Cccc---------------c----c-----------c---------------
Confidence 0000 0 0 0
Q ss_pred HHHHhhhcccccHHHHHHHHhhcCCCcccccchhhhcccccccccCCcccccccchhhhhhhhhcccCCCCCCCeEEEEE
Q 047363 324 VLQAVLSHWLPLSDAILSMVVKCIPDPISAQSYRISRLLPKREILDNDVDCNVLTEADFVRKSVEVCNSSPEAPCVAFVS 403 (876)
Q Consensus 324 ll~~v~~~~lp~~~~lLd~i~~~lPsP~~a~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~cd~~~~~plv~~V~ 403 (876)
..+|+.....||+++.+++|.|.. + .++|+.++|.
T Consensus 192 -----~~~w~~~~~~ll~~l~~~~~~p~~--------------------------------------~--~~~p~r~~I~ 226 (409)
T CHL00071 192 -----ENKWVDKIYNLMDAVDSYIPTPER--------------------------------------D--TDKPFLMAIE 226 (409)
T ss_pred -----CCchhhhHHHHHHHHHhhCCCCCC--------------------------------------C--CCCCEEEEEE
Confidence 123444445788888888887731 0 3578999999
Q ss_pred EeeeecccccCCCCCCccccccccCCCCCCCCccceEEEEEEEeCccCCCCEEEEeccccCCcchhhhccccceeEEeEE
Q 047363 404 KMFAVPIKMLPQRGSNGEILDNYADKGGNGESEECFLAFARIFSGVLYSGQRVFVLSALYDPLKVESMQKHIQEAELQSL 483 (876)
Q Consensus 404 K~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iaf~RV~SGtL~~G~~v~vlg~~y~~~~~~~~~~~~~~~~I~~L 483 (876)
+++.++.. ..+++|||+||+++.||.|.++++..+ ...+|.+|
T Consensus 227 ~v~~~~g~--------------------------G~Vv~G~V~sG~l~~Gd~v~i~p~~~~-----------~~~~VksI 269 (409)
T CHL00071 227 DVFSITGR--------------------------GTVATGRIERGTVKVGDTVEIVGLRET-----------KTTTVTGL 269 (409)
T ss_pred EEEEeCCC--------------------------eEEEEEEEecCEEeeCCEEEEeeCCCC-----------cEEEEEEE
Confidence 99987642 148999999999999999988753210 23688888
Q ss_pred EEecCCceeecceeeCCCeEEEe--cCC-ceeeccceecCCC
Q 047363 484 YLMMGQGLKPVASAKAGNVVAIR--GLG-QQILKSATLSSTR 522 (876)
Q Consensus 484 ~l~~G~~~~~v~~v~AGnIv~I~--GL~-~~i~k~~Tl~s~~ 522 (876)
.... .++++|.|||+|+|. |++ ..+.+|+.|++..
T Consensus 270 ~~~~----~~v~~a~aGd~v~i~l~~i~~~~i~~G~vl~~~~ 307 (409)
T CHL00071 270 EMFQ----KTLDEGLAGDNVGILLRGIQKEDIERGMVLAKPG 307 (409)
T ss_pred EEcC----cCCCEECCCceeEEEEcCCCHHHcCCeEEEecCC
Confidence 7642 478999999999765 654 2367888887653
No 29
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.97 E-value=5.8e-30 Score=267.55 Aligned_cols=193 Identities=44% Similarity=0.703 Sum_probs=169.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhhCCCCccc---ccCCceeeccChhhhhhcceeeeeeEEEEEEc-----CeEEEEEcC
Q 047363 10 RNISILAHVDHGKTTLADHLIAATGGGLLHP---KLAGKLRFMDYLDEEQRRAITMKSSSIALHYK-----DYAINLIDS 81 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~---~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~-----~~~inlIDT 81 (876)
|||+|+||+|||||||+++|+.. .+.+.. ...+..+++|..++|++||+|++...+.+.+. .+.+++|||
T Consensus 1 rnv~iiG~~~~GKTtL~~~l~~~--~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDt 78 (213)
T cd04167 1 RNVAIAGHLHHGKTSLLDMLIEQ--THDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDT 78 (213)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHh--cCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEEC
Confidence 89999999999999999999998 655542 23445678999999999999999999988765 388999999
Q ss_pred CCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccccccccChHHHHHHHHHHHHHh
Q 047363 82 PGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLISELKLTPLEAYNRLLRIVHEV 161 (876)
Q Consensus 82 PGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~~e~~~~~~~~~~~l~~~l~~v 161 (876)
|||.+|...+..+++.+|++|+|+|+.++...+++.+++.+...++|+++|+||+|+...+..+++.+.+.++.++++++
T Consensus 79 pG~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~~~~l~~~~~~~~l~~~i~~~ 158 (213)
T cd04167 79 PGHVNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRLILELKLPPNDAYFKLRHIIDEV 158 (213)
T ss_pred CCCcchHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCcccccCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988888888888878899999999999998888888999999999999999
Q ss_pred hhhhhhccccccccccccccccCcccccccccccccccccccccCCCCcEEEEeccCCCccchHHHHHHHH
Q 047363 162 NGIMSAYKSEKYLSDVDSLLSVPSEKLGDENLQFIEDDEEDTFQPQKGNVAFVCGLDGWGFSISEFAEFYA 232 (876)
Q Consensus 162 n~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~~gnV~f~Sa~~Gw~ftl~~fa~~y~ 232 (876)
|.++..+.. .....|.|.++||+|+|+.+||+|++.+|+.+|.
T Consensus 159 n~~~~~~~~----------------------------~~~~~~~p~~~nv~~~s~~~~w~~~~~~~~~~~~ 201 (213)
T cd04167 159 NNIIASFST----------------------------TLSFLFSPENGNVCFASSKFGFCFTLESFAKKYG 201 (213)
T ss_pred HHHHHHhcC----------------------------CCceEeccCCCeEEEEecCCCeEEecHHHHhhhh
Confidence 988754311 0125799999999999999999999999999883
No 30
>cd01683 EF2_IV_snRNP EF-2_domain IV_snRNP domain is a part of 116kD U5-specific protein of the U5 small nucleoprotein (snRNP) particle, essential component of the spliceosome. The protein is structurally closely related to the eukaryotic translational elongation factor EF2. This domain has been also identified in 114kD U5-specific protein of Saccharomyces cerevisiae and may play an important role either in splicing process itself or the recycling of spliceosomal snRNP.
Probab=99.97 E-value=1.4e-30 Score=263.12 Aligned_cols=141 Identities=29% Similarity=0.451 Sum_probs=111.1
Q ss_pred CCeeeEEecCCCCCCCCccccccccCCcceEEeecCCCceEEEEEeecCChhHHHHHHhhhhhhhhhhccCCCccccccc
Q 047363 607 PPLVSYKETIEGDTSNPLQNVILLSGSSDYFEKTTPNGRCVVRVQVMKLPFTVTKVLDECADLLGIIIGGQANKSLETQR 686 (876)
Q Consensus 607 ~P~V~yrETI~~~~~~~~~~~~~~~~~~~~~~~~t~n~~~~i~v~a~PLp~~v~~~le~~~~~~~~~~~g~~~~~~~~~~ 686 (876)
+|+|+|||||.+.+ ...++++|||+||+|+++|+|||++++++|+++ ....
T Consensus 1 ~P~V~f~ETv~~~s-------------~~~~~~ks~nk~n~i~~~aepL~~~l~~~i~~g----------~~~~------ 51 (178)
T cd01683 1 DPVVTFCETVVETS-------------SAKCFAETPNKKNKITMIAEPLDKGLAEDIENG----------QLKL------ 51 (178)
T ss_pred CCcceEEeeccccC-------------CCceeeECCCcccEEEEEEEeCCHHHHHHHHcC----------CCCc------
Confidence 69999999998643 346889999999999999999999999999874 3110
Q ss_pred CCCCCCCChHHHHHHHHHHHHHhhhhcCCCchHHHHHHhhhHHHH-hhccEEEECCCCCCCeEEEcCCCCCCCCccccee
Q 047363 687 SSSGEDDNPIEALRKRIMDAVEDHISAGNENDQYRMEKCKVKWQK-LLRRIWALGPRQIGPNILFKPDDKQIDTESSVLV 765 (876)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~w~~-~~~~IwafGP~~~g~NiL~~~~~~~~~~~~~~~~ 765 (876)
..+ .+++.+.|++ +|+ ||. .+++||||||+++|||||+ |++.+...
T Consensus 52 ------~~~----~~~~~~~l~~--------------~~~--wd~~~~~~iw~fgP~~~g~Nilv-------d~t~~~~~ 98 (178)
T cd01683 52 ------SWN----RKKLGKFLRT--------------KYG--WDALAARSIWAFGPDTKGPNVLI-------DDTLPEEV 98 (178)
T ss_pred ------CcC----HHHHHHHHHH--------------HhC--CCHHHhcCeEEEcCCCCCCeEEE-------ecCcCccc
Confidence 011 2233344443 366 986 6889999999999999999 55443211
Q ss_pred cccccccccccccCCCCCCCCccCCCCCCCccchhhhhhhHHHHHHHHHHHhcCCCCCCCCcceeEEEEEEEeecc
Q 047363 766 RGSAHVSERLGFVDNSDDGDAAEEIPPGVNRASFVEAQSLESSIVSGFQLATASGPLCDEPMWGLAFIVEAYISSN 841 (876)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~siv~GFq~at~~GPLceEp~~gv~f~i~d~~~~~ 841 (876)
.+..+.+++++|++|||||+++||||+|||+||+|+|+|+.+|+
T Consensus 99 --------------------------------~~~~~~~~~~sI~~Gf~~a~~~GPL~gepv~gv~v~l~d~~~~~ 142 (178)
T cd01683 99 --------------------------------DKNLLNSVKESIVQGFQWAVREGPLCEEPIRNVKFKLLDADIAS 142 (178)
T ss_pred --------------------------------chhhHHHHHHHHHHHHHHHHHcCCcCCCeeecEEEEEEEeeecc
Confidence 02347899999999999999999999999999999999999885
No 31
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.97 E-value=1e-29 Score=274.10 Aligned_cols=253 Identities=24% Similarity=0.346 Sum_probs=185.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccC------CceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcC
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLA------GKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDS 81 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~------g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDT 81 (876)
++|||+|+||+|+|||||+++|++. +|.+.+... ...+++|+.+.|++||+++..+...+.|+++++++|||
T Consensus 1 ~~Rni~ivGh~~~GKTTL~e~ll~~--~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDT 78 (267)
T cd04169 1 RRRTFAIISHPDAGKTTLTEKLLLF--GGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDT 78 (267)
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHh--cCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEEC
Confidence 5799999999999999999999999 777764321 13457899999999999999999999999999999999
Q ss_pred CCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccccccccChHHHHHHHHHHHHHh
Q 047363 82 PGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLISELKLTPLEAYNRLLRIVHEV 161 (876)
Q Consensus 82 PGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~~e~~~~~~~~~~~l~~~l~~v 161 (876)
|||.+|..++..+++.+|++|+|+|+..|+..+++.+|+.+...++|+++|+||+|+..+++ .+++..++..+. .
T Consensus 79 PG~~df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~iivvNK~D~~~a~~----~~~~~~l~~~l~-~ 153 (267)
T cd04169 79 PGHEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDREGRDP----LELLDEIEEELG-I 153 (267)
T ss_pred CCchHHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEEEEEECCccCCCCH----HHHHHHHHHHHC-C
Confidence 99999999999999999999999999999999999999999888999999999999987653 222333322221 0
Q ss_pred hhhhhhccccccccccccccccCcccccccccccccccccccccCCCCcEEEEeccCCCccchHHHHHHHHHhcCCCHHH
Q 047363 162 NGIMSAYKSEKYLSDVDSLLSVPSEKLGDENLQFIEDDEEDTFQPQKGNVAFVCGLDGWGFSISEFAEFYATKLGASTAA 241 (876)
Q Consensus 162 n~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~~gnV~f~Sa~~Gw~ftl~~fa~~y~~k~~~~~~~ 241 (876)
..+. +..|.+++ ..|.++++......
T Consensus 154 ~~~~---------------~~~Pi~~~-~~~~g~vd~~~~~a-------------------------------------- 179 (267)
T cd04169 154 DCTP---------------LTWPIGMG-KDFKGVYDRRTGEV-------------------------------------- 179 (267)
T ss_pred Ccee---------------EEecccCC-CceEEEEEhhhCEE--------------------------------------
Confidence 1110 11144433 23444444322211
Q ss_pred HHHhhccccee-cCCCcccccccCCCCCCCCCCchhhhhchhHHHHHHHHcCCCCcHHHHHHHHHHcCCCCCHHHHhccC
Q 047363 242 LEKALWGPRYF-NPKTKMIVGKKGISTGTKARPMFVQFVLEPLWQVYQAALEPDGDKGVLEKVIKSFNLSIPRRELQNKD 320 (876)
Q Consensus 242 l~k~LWGd~y~-~~ktkk~~~~~~~~~~~~~~p~Fv~fiL~pi~~l~~~v~~~d~~~~~l~k~l~~~g~~l~~~~l~~~~ 320 (876)
|+| ++..++...... .|. .+.+.+++.+++ +|++|++ +..++.+++....
T Consensus 180 --------~~~~~~~~~~~~~~~~-------~p~----------~~~e~~~e~~~~--l~e~~~e--~~~~~~~~~~~~~ 230 (267)
T cd04169 180 --------ELYDRGAGGATIAPEE-------TKG----------LDDPKLDELGGD--LAEQLRE--ELELLEGAGPEFD 230 (267)
T ss_pred --------EEecCCCCCccceecc-------CCc----------ccHHHHHhcCHH--HHHHHhC--CCccchhhhHHHh
Confidence 122 111110000000 111 122677777666 9999998 5677777888778
Q ss_pred hHHHHHHhhhcccccH-------HHHHHHHhhcCCCc
Q 047363 321 PKAVLQAVLSHWLPLS-------DAILSMVVKCIPDP 350 (876)
Q Consensus 321 ~k~ll~~v~~~~lp~~-------~~lLd~i~~~lPsP 350 (876)
++.+++..+.|+|++| +.|||+|++++|||
T Consensus 231 ~~~~~~~~~~Pv~~gsa~~~~Gv~~Lld~i~~~~P~p 267 (267)
T cd04169 231 QEAFLAGELTPVFFGSALNNFGVQELLDALVDLAPAP 267 (267)
T ss_pred HHHHHcCCEEEEEecccccCcCHHHHHHHHHHHCCCC
Confidence 8899988888888885 89999999999998
No 32
>PRK12736 elongation factor Tu; Reviewed
Probab=99.97 E-value=2.4e-28 Score=277.92 Aligned_cols=133 Identities=28% Similarity=0.367 Sum_probs=113.9
Q ss_pred CCCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCc
Q 047363 6 TRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHM 85 (876)
Q Consensus 6 ~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~ 85 (876)
....+||+++||+|||||||+++|+.. .+..........+++|..++|++||+|+.++.+.+.++++.++|||||||.
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~--~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~ 86 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKV--LAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHA 86 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhh--hhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHH
Confidence 456799999999999999999999875 221110001112368999999999999999988888888999999999999
Q ss_pred cchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCC-cEEEEecccccc
Q 047363 86 DFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLT-PCLVLNKIDRLI 140 (876)
Q Consensus 86 dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip-~ilviNKiD~~~ 140 (876)
+|...+.++++.+|++++|||+.+|+..|+++++..+...++| +|+|+||+|+..
T Consensus 87 ~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~ 142 (394)
T PRK12736 87 DYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVD 142 (394)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcc
Confidence 9999999999999999999999999999999999999999999 468899999863
No 33
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.96 E-value=8.1e-30 Score=270.53 Aligned_cols=228 Identities=30% Similarity=0.435 Sum_probs=181.7
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhhCCCCccccc--CCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccch
Q 047363 11 NISILAHVDHGKTTLADHLIAATGGGLLHPKL--AGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFC 88 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~--~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~ 88 (876)
||+++||+|+|||||+++|++. .|.+.+.. ....+++|+.+.|++||+|+..+...+.|+++++++||||||.+|.
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~--~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~ 78 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYT--SGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFI 78 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH--cCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchH
Confidence 7999999999999999999999 77765432 2334788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccccccccChHHHHHHHHHHHHHhhhhhhhc
Q 047363 89 SEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLISELKLTPLEAYNRLLRIVHEVNGIMSAY 168 (876)
Q Consensus 89 ~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~~e~~~~~~~~~~~l~~~l~~vn~~~~s~ 168 (876)
.++..+++.+|++|+|+|+.+|+..+++.+|+.+.+.++|+++|+||+|+..+++ ++.+..++..+.. ..+
T Consensus 79 ~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~~a~~----~~~~~~i~~~~~~-~~~---- 149 (237)
T cd04168 79 AEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRAGADL----EKVYQEIKEKLSS-DIV---- 149 (237)
T ss_pred HHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccccCCCH----HHHHHHHHHHHCC-CeE----
Confidence 9999999999999999999999999999999999999999999999999987653 2333333222110 000
Q ss_pred cccccccccccccccCcccccccccccccccccccccCCCCcEEEEeccCCCccchHHHHHHHHHhcCCCHHHHHHhhcc
Q 047363 169 KSEKYLSDVDSLLSVPSEKLGDENLQFIEDDEEDTFQPQKGNVAFVCGLDGWGFSISEFAEFYATKLGASTAALEKALWG 248 (876)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~~gnV~f~Sa~~Gw~ftl~~fa~~y~~k~~~~~~~l~k~LWG 248 (876)
| ..-| + |+
T Consensus 150 ---------------~------------------~~~p------------~---------------------------~~ 157 (237)
T cd04168 150 ---------------P------------------MQKV------------G---------------------------LA 157 (237)
T ss_pred ---------------E------------------EECC------------c---------------------------Ee
Confidence 0 0001 0 11
Q ss_pred cceecCCCcccccccCCCCCCCCCCchhhhhchhHHHHHHHHcCCCCcHHHHHHHHHHcCCCCCHHHHhccChHHHHHHh
Q 047363 249 PRYFNPKTKMIVGKKGISTGTKARPMFVQFVLEPLWQVYQAALEPDGDKGVLEKVIKSFNLSIPRRELQNKDPKAVLQAV 328 (876)
Q Consensus 249 d~y~~~ktkk~~~~~~~~~~~~~~p~Fv~fiL~pi~~l~~~v~~~d~~~~~l~k~l~~~g~~l~~~~l~~~~~k~ll~~v 328 (876)
+.++. . .. .| -++++++++.|++ +|++|++ |..+++++|.+..++.++.+.
T Consensus 158 ~~~~~-----~--------~~--~~----------~~l~e~vae~dd~--l~e~yl~--~~~~~~~el~~~l~~~~~~~~ 208 (237)
T cd04168 158 PNICE-----T--------NE--ID----------DEFWETLAEGDDE--LLEKYLE--GGPIEELELDNELSARIAKRK 208 (237)
T ss_pred eeeee-----e--------ee--cc----------HHHHHHHhcCCHH--HHHHHhC--CCCCCHHHHHHHHHHHHHhCC
Confidence 10000 0 00 12 1688999998877 9999998 679999999999999999988
Q ss_pred hhcccccH-------HHHHHHHhhcCCCc
Q 047363 329 LSHWLPLS-------DAILSMVVKCIPDP 350 (876)
Q Consensus 329 ~~~~lp~~-------~~lLd~i~~~lPsP 350 (876)
+.|+|++| +.|||+|++++|||
T Consensus 209 ~~Pv~~gsa~~~~Gv~~ll~~~~~~~p~~ 237 (237)
T cd04168 209 VFPVYHGSALKGIGIEELLEGITKLFPTS 237 (237)
T ss_pred eEEEEEccccCCcCHHHHHHHHHHhcCCC
Confidence 88888774 89999999999998
No 34
>cd01681 aeEF2_snRNP_like_IV This family represents domain IV of archaeal and eukaryotic elongation factor 2 (aeEF-2) and of an evolutionarily conserved U5 snRNP-specific protein. U5 snRNP is a GTP-binding factor closely related to the ribosomal translocase EF-2. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site of the small subunit of ribosome and the mRNA is shifted one codon relative to the ribosome. It has been shown that EF-2_IV domain mimics the shape of anticodon arm of the tRNA in the structurally homologous ternary complex of Phe-tRNA, EF-1 (another transcriptional elongation factor) and GTP analog. The tip portion of this domain is found in a position that overlaps the anticodon arm of the A-site tRNA, implying that EF-2 displaces the A-site tRNA to the P-site by physical interaction with the anticodon arm.
Probab=99.96 E-value=8e-30 Score=258.79 Aligned_cols=142 Identities=32% Similarity=0.508 Sum_probs=112.7
Q ss_pred CCeeeEEecCCCCCCCCccccccccCCcceEEeecCCCceEEEEEeecCChhHHHHHHhhhhhhhhhhccCCCccccccc
Q 047363 607 PPLVSYKETIEGDTSNPLQNVILLSGSSDYFEKTTPNGRCVVRVQVMKLPFTVTKVLDECADLLGIIIGGQANKSLETQR 686 (876)
Q Consensus 607 ~P~V~yrETI~~~~~~~~~~~~~~~~~~~~~~~~t~n~~~~i~v~a~PLp~~v~~~le~~~~~~~~~~~g~~~~~~~~~~ 686 (876)
+|+|||||||.+.+ .+.+..+|+|++++|+++|+|||.+++++|+++...++.+..
T Consensus 1 ~PiV~frETi~~~~-------------~~~~~~~s~n~~~~i~~~a~PLp~~~~~~i~~~~~~~~~~~~----------- 56 (177)
T cd01681 1 DPVVSFRETVVETS-------------SGTCLAKSPNKHNRLYMRAEPLPEELIEDIEKGKITLKDDKK----------- 56 (177)
T ss_pred CCCCCEeeecccCC-------------CccEEEEcCCcceEEEEEEecCCHHHHHHHHcCCCCcchhHH-----------
Confidence 69999999997642 357889999999999999999999999999986433332211
Q ss_pred CCCCCCCChHHHHHHHHHHHHHhhhhcCCCchHHHHHHhhhHHHHh-hccEEEECCCCCCCeEEEcCCCCCCCCccccee
Q 047363 687 SSSGEDDNPIEALRKRIMDAVEDHISAGNENDQYRMEKCKVKWQKL-LRRIWALGPRQIGPNILFKPDDKQIDTESSVLV 765 (876)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~w~~~-~~~IwafGP~~~g~NiL~~~~~~~~~~~~~~~~ 765 (876)
...+.+. ++++ |+.. +++||||||+++|||||+ |++.+.++
T Consensus 57 ---------------~~~~~~~--------------~~~~--w~~~~~~~Iw~fGP~~~gpNiLi-------~~t~~~~~ 98 (177)
T cd01681 57 ---------------KRARILL--------------DKYG--WDKLAARKIWAFGPDRTGPNILV-------DDTKGVQY 98 (177)
T ss_pred ---------------HHHHHHH--------------HHcC--CCHHHhCcEEEECCCCCCceEEE-------eCCCCccc
Confidence 1111122 2244 9876 999999999999999999 65555443
Q ss_pred cccccccccccccCCCCCCCCccCCCCCCCccchhhhhhhHHHHHHHHHHHhcCCCCCCCCcceeEEEEEEEeeccc
Q 047363 766 RGSAHVSERLGFVDNSDDGDAAEEIPPGVNRASFVEAQSLESSIVSGFQLATASGPLCDEPMWGLAFIVEAYISSNF 842 (876)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~siv~GFq~at~~GPLceEp~~gv~f~i~d~~~~~~ 842 (876)
. +..+.+++++|++|||||+++||||+|||+||+|.|+++.+|+.
T Consensus 99 ~--------------------------------~~~~~~~~~si~~Gf~~a~~~GpL~~ePv~gv~v~l~~~~~~~~ 143 (177)
T cd01681 99 D--------------------------------KSLLNEIKDSIVAGFQWATKEGPLCEEPMRGVKFKLEDATLHAD 143 (177)
T ss_pred c--------------------------------cccHHHHHHHHHHHHHHHHhcCCcCCCcccceEEEEEeeeeccc
Confidence 1 22367999999999999999999999999999999999999864
No 35
>PRK12735 elongation factor Tu; Reviewed
Probab=99.96 E-value=6.8e-27 Score=266.20 Aligned_cols=133 Identities=29% Similarity=0.352 Sum_probs=113.6
Q ss_pred CCCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCc
Q 047363 6 TRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHM 85 (876)
Q Consensus 6 ~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~ 85 (876)
.....||+++||+|||||||+++|++. .+............+|..++|++||+|+..+...+.+++..++|+|||||.
T Consensus 9 ~~~~~~i~iiGhvd~GKSTL~~~L~~~--~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~ 86 (396)
T PRK12735 9 TKPHVNVGTIGHVDHGKTTLTAAITKV--LAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHA 86 (396)
T ss_pred CCCeEEEEEECcCCCCHHHHHHHHHHh--hhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHH
Confidence 345689999999999999999999985 221111011122468999999999999999988888888999999999999
Q ss_pred cchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcE-EEEecccccc
Q 047363 86 DFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPC-LVLNKIDRLI 140 (876)
Q Consensus 86 dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~i-lviNKiD~~~ 140 (876)
+|...+..++..+|++++|+|+.+|...|+++++..+...++|.+ +|+||+|+..
T Consensus 87 ~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~ 142 (396)
T PRK12735 87 DYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVD 142 (396)
T ss_pred HHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcc
Confidence 999999999999999999999999999999999999999999977 5799999963
No 36
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.95 E-value=1.1e-26 Score=264.68 Aligned_cols=132 Identities=30% Similarity=0.394 Sum_probs=113.9
Q ss_pred CCCceEEEEEeCCCCcHHHHHHHHHHhhCC-CCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCC
Q 047363 6 TRKIRNISILAHVDHGKTTLADHLIAATGG-GLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGH 84 (876)
Q Consensus 6 ~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~-g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh 84 (876)
....+||+++||+|||||||+++|++.++. |... .....++|..++|++||+|+..+.+.+.++++.++|||||||
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~---~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh 85 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAA---ARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGH 85 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhccc---ccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCch
Confidence 456799999999999999999999865211 1110 111246899999999999999998888888899999999999
Q ss_pred ccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcE-EEEecccccc
Q 047363 85 MDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPC-LVLNKIDRLI 140 (876)
Q Consensus 85 ~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~i-lviNKiD~~~ 140 (876)
.+|...+..++..+|++++|||+.+|...|+.+++..+...++|.+ +|+||+|+..
T Consensus 86 ~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~ 142 (394)
T TIGR00485 86 ADYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVD 142 (394)
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCC
Confidence 9999999999999999999999999999999999999999999987 5899999864
No 37
>PLN03126 Elongation factor Tu; Provisional
Probab=99.95 E-value=1.3e-26 Score=267.69 Aligned_cols=133 Identities=29% Similarity=0.380 Sum_probs=121.1
Q ss_pred CCCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCc
Q 047363 6 TRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHM 85 (876)
Q Consensus 6 ~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~ 85 (876)
....+||+++||+|||||||+++|++. .|.+......+..++|..++|++||+|+......+.++++.++|||||||.
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~--~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~ 155 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMA--LASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHA 155 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHh--hhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHH
Confidence 456799999999999999999999998 666655444455689999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCC-cEEEEecccccc
Q 047363 86 DFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLT-PCLVLNKIDRLI 140 (876)
Q Consensus 86 dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip-~ilviNKiD~~~ 140 (876)
+|..++..+++.+|++|+|||+.+|+..||++++..+...++| +|+++||||+..
T Consensus 156 ~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~ 211 (478)
T PLN03126 156 DYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVD 211 (478)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccC
Confidence 9999999999999999999999999999999999999999999 567899999864
No 38
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.95 E-value=3.1e-26 Score=275.89 Aligned_cols=314 Identities=20% Similarity=0.247 Sum_probs=223.8
Q ss_pred CCCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCc
Q 047363 6 TRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHM 85 (876)
Q Consensus 6 ~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~ 85 (876)
..+..+|+|+||+|||||||+++|... . +. ....+|+|.......+.|.++.++|||||||.
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~--~--v~--------------~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe 348 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKT--N--VA--------------AGEAGGITQHIGAYQVETNGGKITFLDTPGHE 348 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhC--C--cc--------------ccccCceeeeccEEEEEECCEEEEEEECCCCc
Confidence 357799999999999999999999654 1 11 01136888888888899989999999999999
Q ss_pred cchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccccccccChHHHHHHHHHHHHHhhhhh
Q 047363 86 DFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLISELKLTPLEAYNRLLRIVHEVNGIM 165 (876)
Q Consensus 86 dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~~e~~~~~~~~~~~l~~~l~~vn~~~ 165 (876)
+|...+.++++.+|++|+|||+.+|+..+|...|+++...++|+|+|+||+|+...+ ++.+...+. +.+.+.
T Consensus 349 ~F~~m~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~~a~----~e~V~~eL~----~~~~~~ 420 (787)
T PRK05306 349 AFTAMRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPGAN----PDRVKQELS----EYGLVP 420 (787)
T ss_pred cchhHHHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCcEEEEEECccccccC----HHHHHHHHH----HhcccH
Confidence 999999999999999999999999999999999999999999999999999997643 222222221 110000
Q ss_pred hhccccccccccccccccCcccccccccccccccccccccCCCCcEEEEeccCCCccchHHHHHHHHHhcCCCHHHHHHh
Q 047363 166 SAYKSEKYLSDVDSLLSVPSEKLGDENLQFIEDDEEDTFQPQKGNVAFVCGLDGWGFSISEFAEFYATKLGASTAALEKA 245 (876)
Q Consensus 166 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~~gnV~f~Sa~~Gw~ftl~~fa~~y~~k~~~~~~~l~k~ 245 (876)
. . +. ..-.++.+||+.|.+..
T Consensus 421 e----------------------------------~--~g-~~vp~vpvSAktG~GI~---------------------- 441 (787)
T PRK05306 421 E----------------------------------E--WG-GDTIFVPVSAKTGEGID---------------------- 441 (787)
T ss_pred H----------------------------------H--hC-CCceEEEEeCCCCCCch----------------------
Confidence 0 0 00 00135667777764310
Q ss_pred hcccceecCCCcccccccCCCCCCCCCCchhhhhchhHHHHHHHHcCCCCcHHHHHHHHHHcCCCCCHHHHhccChHHHH
Q 047363 246 LWGPRYFNPKTKMIVGKKGISTGTKARPMFVQFVLEPLWQVYQAALEPDGDKGVLEKVIKSFNLSIPRRELQNKDPKAVL 325 (876)
Q Consensus 246 LWGd~y~~~ktkk~~~~~~~~~~~~~~p~Fv~fiL~pi~~l~~~v~~~d~~~~~l~k~l~~~g~~l~~~~l~~~~~k~ll 325 (876)
+ +++.++.
T Consensus 442 --------------------------------------------------e--Lle~I~~-------------------- 449 (787)
T PRK05306 442 --------------------------------------------------E--LLEAILL-------------------- 449 (787)
T ss_pred --------------------------------------------------H--HHHhhhh--------------------
Confidence 0 1110000
Q ss_pred HHhhhcccccHHHHHHHHhhcCCCcccccchhhhcccccccccCCcccccccchhhhhhhhhcccCCCCCCCeEEEEEEe
Q 047363 326 QAVLSHWLPLSDAILSMVVKCIPDPISAQSYRISRLLPKREILDNDVDCNVLTEADFVRKSVEVCNSSPEAPCVAFVSKM 405 (876)
Q Consensus 326 ~~v~~~~lp~~~~lLd~i~~~lPsP~~a~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~cd~~~~~plv~~V~K~ 405 (876)
+.++ .. ..++ +++|+.++|++.
T Consensus 450 -------------~~e~---------------~~----------------------------l~~~--~~~~~~g~V~es 471 (787)
T PRK05306 450 -------------QAEV---------------LE----------------------------LKAN--PDRPARGTVIEA 471 (787)
T ss_pred -------------hhhh---------------hh----------------------------cccC--CCCCcEEEEEEE
Confidence 0000 00 0112 568899999999
Q ss_pred eeecccccCCCCCCccccccccCCCCCCCCccceEEEEEEEeCccCCCCEEEEeccccCCcchhhhccccceeEEeEEEE
Q 047363 406 FAVPIKMLPQRGSNGEILDNYADKGGNGESEECFLAFARIFSGVLYSGQRVFVLSALYDPLKVESMQKHIQEAELQSLYL 485 (876)
Q Consensus 406 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iaf~RV~SGtL~~G~~v~vlg~~y~~~~~~~~~~~~~~~~I~~L~l 485 (876)
+.+++. ..++++||++|+|++||.|.+ |+ +.++++.
T Consensus 472 ~~dkg~--------------------------G~v~~v~V~sGtLk~Gd~vv~-g~-----------------~~gkVr~ 507 (787)
T PRK05306 472 KLDKGR--------------------------GPVATVLVQNGTLKVGDIVVA-GT-----------------TYGRVRA 507 (787)
T ss_pred EEcCCC--------------------------eEEEEEEEecCeEecCCEEEE-CC-----------------cEEEEEE
Confidence 877642 159999999999999999965 22 3567777
Q ss_pred ecCCceeecceeeCCCeEEEecCCceeeccceecCCCCc------------------------ccCCCccc----cCCce
Q 047363 486 MMGQGLKPVASAKAGNVVAIRGLGQQILKSATLSSTRNC------------------------WPFSSMVF----QVSPT 537 (876)
Q Consensus 486 ~~G~~~~~v~~v~AGnIv~I~GL~~~i~k~~Tl~s~~~~------------------------~~~~~~~~----~~~Pv 537 (876)
|.+....++++|.||++|+|.||++.-..|+||+...+. ..+..+.. ...+.
T Consensus 508 m~~~~~~~v~~A~pGd~V~I~gl~~~p~~Gd~l~~~~~e~~a~~~~~~r~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 587 (787)
T PRK05306 508 MVDDNGKRVKEAGPSTPVEILGLSGVPQAGDEFVVVEDEKKAREIAEYRQEKAREKKLARQQRVSLENLFEQMKEGEVKE 587 (787)
T ss_pred EECCCCCCCCEEcCCCeEEEeCCCCCCCCCCEEEEcCCHHHHHHHHHHHHHHHHHHHhhhccccCHHHhhhhhhcCCceE
Confidence 888777889999999999999999854788999732110 11222211 11136
Q ss_pred eEEEEeeCCCccHHHHHHHHHHHHhcCCceEEEEccCCcEEEEecchhH
Q 047363 538 LRVAIEPSDPADMGALMKGLRLLNRADPFVEVSVSSRGENVLAAAGEVH 586 (876)
Q Consensus 538 v~vaIEP~~~~d~~kL~~gL~~L~~~DP~l~v~~~etGE~vl~g~GElH 586 (876)
+.+.|.+.....+.+|..+|.+|..+++.+.|- -+|.|.+.
T Consensus 588 ~~~iikad~~Gs~eai~~~l~~l~~~~v~~~i~--------~~~vG~it 628 (787)
T PRK05306 588 LNLIIKADVQGSVEALKDSLEKLSTDEVKVNII--------HSGVGAIT 628 (787)
T ss_pred EEEEEEeCCcchHHHHHHHHHhhcccCCceEEE--------eeccCCCC
Confidence 899999999999999999999999999987664 35566654
No 39
>PRK00049 elongation factor Tu; Reviewed
Probab=99.95 E-value=3.5e-26 Score=260.29 Aligned_cols=132 Identities=29% Similarity=0.380 Sum_probs=114.3
Q ss_pred CCCceEEEEEeCCCCcHHHHHHHHHHhhCC-CCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCC
Q 047363 6 TRKIRNISILAHVDHGKTTLADHLIAATGG-GLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGH 84 (876)
Q Consensus 6 ~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~-g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh 84 (876)
....+||+++||+|||||||+++|++.++. |. ........+|..++|++||+|+.++.+.+.++++.++|+|||||
T Consensus 9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~---~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~ 85 (396)
T PRK00049 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGG---AEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGH 85 (396)
T ss_pred CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccC---CcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCH
Confidence 356799999999999999999999986211 11 00112236899999999999999998888888899999999999
Q ss_pred ccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcE-EEEecccccc
Q 047363 85 MDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPC-LVLNKIDRLI 140 (876)
Q Consensus 85 ~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~i-lviNKiD~~~ 140 (876)
.+|..++..++..+|++++|||+.+|+..+++.++..+...++|.+ +++||+|+..
T Consensus 86 ~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~ 142 (396)
T PRK00049 86 ADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVD 142 (396)
T ss_pred HHHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcc
Confidence 9999999999999999999999999999999999999999999987 5899999964
No 40
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.95 E-value=3.3e-26 Score=263.33 Aligned_cols=152 Identities=27% Similarity=0.368 Sum_probs=125.7
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCCCccccc---------CC---c---eeeccChhhhhhcceeeeeeEEEEEE
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKL---------AG---K---LRFMDYLDEEQRRAITMKSSSIALHY 71 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~---------~g---~---~~~~d~~~~E~~rgiti~~~~i~~~~ 71 (876)
...+||+++||+|||||||+++|++. .|.++++. .+ . .+++|..++|++||+|++.+...+.+
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~--~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~ 82 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYK--LGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFET 82 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHH--hCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecC
Confidence 44689999999999999999999999 77665432 11 1 25789999999999999999999999
Q ss_pred cCeEEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCccc-------cchHHHHHHhhhhcCCc-EEEEeccccccccc
Q 047363 72 KDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVH-------IQTHAVLRQSWIEKLTP-CLVLNKIDRLISEL 143 (876)
Q Consensus 72 ~~~~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv~-------~~t~~~l~~~~~~~ip~-ilviNKiD~~~~e~ 143 (876)
+++.++|||||||.+|..++..+++.+|+||+|||+.+|.. .||++.+..+...++|. |+|+||||+...+
T Consensus 83 ~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~~~~~- 161 (447)
T PLN00043 83 TKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPK- 161 (447)
T ss_pred CCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEcccCCchh-
Confidence 99999999999999999999999999999999999999842 68999999999999975 6789999986322
Q ss_pred ccChHHHHHHHHHHHHHhhhhhh
Q 047363 144 KLTPLEAYNRLLRIVHEVNGIMS 166 (876)
Q Consensus 144 ~~~~~~~~~~l~~~l~~vn~~~~ 166 (876)
....++..++++++.++.
T Consensus 162 -----~~~~~~~~i~~ei~~~l~ 179 (447)
T PLN00043 162 -----YSKARYDEIVKEVSSYLK 179 (447)
T ss_pred -----hhHHHHHHHHHHHHHHHH
Confidence 123455666666665543
No 41
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.95 E-value=1.3e-25 Score=258.57 Aligned_cols=151 Identities=26% Similarity=0.403 Sum_probs=125.5
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCCCccccc------------CCce---eeccChhhhhhcceeeeeeEEEEEE
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKL------------AGKL---RFMDYLDEEQRRAITMKSSSIALHY 71 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~------------~g~~---~~~d~~~~E~~rgiti~~~~i~~~~ 71 (876)
....||+++||+|||||||+++|++. .|.++.+. .|.. +++|..++|++||+|+..+...+.+
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~--~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~ 82 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYK--CGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET 82 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHH--cCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEcc
Confidence 45589999999999999999999999 77766431 1222 3599999999999999999999999
Q ss_pred cCeEEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCcc-------ccchHHHHHHhhhhcCCc-EEEEeccccccccc
Q 047363 72 KDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGV-------HIQTHAVLRQSWIEKLTP-CLVLNKIDRLISEL 143 (876)
Q Consensus 72 ~~~~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv-------~~~t~~~l~~~~~~~ip~-ilviNKiD~~~~e~ 143 (876)
+++.++|||||||.+|..++..++..+|+||+|||+.+|+ ..||.+.|..+...++|. |+|+||||+...++
T Consensus 83 ~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD~~~~~~ 162 (446)
T PTZ00141 83 PKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKMDDKTVNY 162 (446)
T ss_pred CCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEccccccchh
Confidence 9999999999999999999999999999999999999998 479999999999999996 57999999754332
Q ss_pred ccChHHHHHHHHHHHHHhhhhh
Q 047363 144 KLTPLEAYNRLLRIVHEVNGIM 165 (876)
Q Consensus 144 ~~~~~~~~~~l~~~l~~vn~~~ 165 (876)
. ..++..+..++...+
T Consensus 163 ~------~~~~~~i~~~i~~~l 178 (446)
T PTZ00141 163 S------QERYDEIKKEVSAYL 178 (446)
T ss_pred h------HHHHHHHHHHHHHHH
Confidence 1 133445555554443
No 42
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.94 E-value=1.6e-26 Score=250.02 Aligned_cols=257 Identities=26% Similarity=0.338 Sum_probs=188.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhhCCCCccccc--CCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccch
Q 047363 11 NISILAHVDHGKTTLADHLIAATGGGLLHPKL--AGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFC 88 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~--~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~ 88 (876)
||+|+||+|+|||||+++|++. .|.+.+.. ....+.+|+.+.|.+|++|+.++...+.|+++.+++||||||.+|.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~--~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~ 78 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYA--TGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFV 78 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHh--cCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHH
Confidence 7999999999999999999998 66654321 1234678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccccccccChHHHHHHHHHHHHHhhhhhhhc
Q 047363 89 SEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLISELKLTPLEAYNRLLRIVHEVNGIMSAY 168 (876)
Q Consensus 89 ~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~~e~~~~~~~~~~~l~~~l~~vn~~~~s~ 168 (876)
.++..+++.+|++|+|+|+..|...++..+|+++...++|.++|+||+|+..+++ ++....++..+.. +.+...
T Consensus 79 ~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~~~~~----~~~~~~l~~~~~~-~~~~~~- 152 (268)
T cd04170 79 GETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRERADF----DKTLAALQEAFGR-PVVPLQ- 152 (268)
T ss_pred HHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCccCCCCH----HHHHHHHHHHhCC-CeEEEE-
Confidence 9999999999999999999999999999999999999999999999999987643 2333333322210 100000
Q ss_pred cccccccccccccccCcccccccccccccccc--cccccCCCCcEEEEeccCCCccchHHHHHHHHHhcCCCHHHHHHhh
Q 047363 169 KSEKYLSDVDSLLSVPSEKLGDENLQFIEDDE--EDTFQPQKGNVAFVCGLDGWGFSISEFAEFYATKLGASTAALEKAL 246 (876)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~f~p~~gnV~f~Sa~~Gw~ftl~~fa~~y~~k~~~~~~~l~k~L 246 (876)
-|.+++ +.+.++++... .+.|.+.+ +.....++.
T Consensus 153 --------------ip~~~~-~~~~~~vd~~~~~~~~~~~~~------------~~~~~~~p~----------------- 188 (268)
T cd04170 153 --------------LPIGEG-DDFKGVVDLLTEKAYIYSPGA------------PSEEIEIPE----------------- 188 (268)
T ss_pred --------------ecccCC-CceeEEEEcccCEEEEccCCC------------cceeccCCH-----------------
Confidence 022222 23333333221 11221100 000000000
Q ss_pred cccceecCCCcccccccCCCCCCCCCCchhhhhchhHHHHHHHHcCCCCcHHHHHHHHHHcCCCCCHHHHhccChHHHHH
Q 047363 247 WGPRYFNPKTKMIVGKKGISTGTKARPMFVQFVLEPLWQVYQAALEPDGDKGVLEKVIKSFNLSIPRRELQNKDPKAVLQ 326 (876)
Q Consensus 247 WGd~y~~~ktkk~~~~~~~~~~~~~~p~Fv~fiL~pi~~l~~~v~~~d~~~~~l~k~l~~~g~~l~~~~l~~~~~k~ll~ 326 (876)
.....+-+..-++.+++++.|++ +|++|++ +..+++++|....++.+++
T Consensus 189 ---------------------------~~~~~~~~~~~~l~e~~a~~dd~--l~e~yl~--~~~~~~~~l~~~l~~~~~~ 237 (268)
T cd04170 189 ---------------------------ELKEEVAEAREELLEAVAETDDE--LMEKYLE--GGELTEEELHAGLRRALRA 237 (268)
T ss_pred ---------------------------HHHHHHHHHHHHHHHHHhhCCHH--HHHHHhC--CCCCCHHHHHHHHHHHHHh
Confidence 11111222233678888888877 9999998 6789999999999999999
Q ss_pred HhhhcccccH-------HHHHHHHhhcCCCc
Q 047363 327 AVLSHWLPLS-------DAILSMVVKCIPDP 350 (876)
Q Consensus 327 ~v~~~~lp~~-------~~lLd~i~~~lPsP 350 (876)
..+.++|++| +.||+++++++|+|
T Consensus 238 ~~~~pv~~gSa~~~~G~~~ll~~~~~~~p~p 268 (268)
T cd04170 238 GLLVPVLCGSALTNIGVRELLDALVHLLPSP 268 (268)
T ss_pred CCEEEEEEeeCCCCcCHHHHHHHHHHhCCCC
Confidence 9999999885 99999999999998
No 43
>PLN03127 Elongation factor Tu; Provisional
Probab=99.94 E-value=3.9e-25 Score=254.21 Aligned_cols=134 Identities=28% Similarity=0.385 Sum_probs=114.6
Q ss_pred CCCCCceEEEEEeCCCCcHHHHHHHHHHhhC-CCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCC
Q 047363 4 SDTRKIRNISILAHVDHGKTTLADHLIAATG-GGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSP 82 (876)
Q Consensus 4 ~~~~~irnI~IvG~~~~GKTTL~~~Ll~~t~-~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTP 82 (876)
+......||+++||+|||||||+++|....+ .|.. .......+|..++|++||+|++.+...+.++++.++|+|||
T Consensus 56 ~~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~---~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtP 132 (447)
T PLN03127 56 TRTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKA---KAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCP 132 (447)
T ss_pred hcCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcc---cceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECC
Confidence 3455679999999999999999999975411 0110 01112358999999999999999999998889999999999
Q ss_pred CCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCc-EEEEecccccc
Q 047363 83 GHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTP-CLVLNKIDRLI 140 (876)
Q Consensus 83 Gh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~-ilviNKiD~~~ 140 (876)
||.+|...+..++..+|++++|||+.+|+..|+++++..+...++|. |+++||+|+..
T Consensus 133 Gh~~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~ 191 (447)
T PLN03127 133 GHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVD 191 (447)
T ss_pred CccchHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCC
Confidence 99999999999999999999999999999999999999999999995 67899999864
No 44
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.94 E-value=1.3e-24 Score=250.07 Aligned_cols=132 Identities=30% Similarity=0.495 Sum_probs=117.0
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCCCccccc----------CCc-----eeeccChhhhhhcceeeeeeEEEEEE
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKL----------AGK-----LRFMDYLDEEQRRAITMKSSSIALHY 71 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~----------~g~-----~~~~d~~~~E~~rgiti~~~~i~~~~ 71 (876)
....||+++||+|||||||+++|++. .|.++... .|+ .+++|..++|++||+|++.....+.+
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~--~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~ 81 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYE--TGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFET 81 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHH--cCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEec
Confidence 45689999999999999999999999 77775431 132 24789999999999999999999999
Q ss_pred cCeEEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCC--ccccchHHHHHHhhhhcCC-cEEEEecccccc
Q 047363 72 KDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVE--GVHIQTHAVLRQSWIEKLT-PCLVLNKIDRLI 140 (876)
Q Consensus 72 ~~~~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~e--gv~~~t~~~l~~~~~~~ip-~ilviNKiD~~~ 140 (876)
+++.++|||||||.+|...+..+++.+|++|+|||+.+ +...++...+..+...++| +++|+||+|+..
T Consensus 82 ~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~ 153 (425)
T PRK12317 82 DKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAVN 153 (425)
T ss_pred CCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEcccccc
Confidence 99999999999999999999999999999999999999 8999999888888888874 778999999975
No 45
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.93 E-value=6e-24 Score=250.98 Aligned_cols=117 Identities=27% Similarity=0.411 Sum_probs=100.7
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCe-EEEEEcCCCCc
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDY-AINLIDSPGHM 85 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~-~inlIDTPGh~ 85 (876)
.+.++|+|+||+|||||||+++|... . +.. ...+|+|.......+.+.+. .++|||||||.
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~--~--v~~--------------~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe 146 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKT--K--VAQ--------------GEAGGITQHIGAYHVENEDGKMITFLDTPGHE 146 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhC--C--ccc--------------ccCCceeecceEEEEEECCCcEEEEEECCCCc
Confidence 35689999999999999999999754 1 110 11357888877777877655 89999999999
Q ss_pred cchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEeccccccc
Q 047363 86 DFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLIS 141 (876)
Q Consensus 86 dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~~ 141 (876)
+|...+.++++.+|++|+|||+.+|+..||...++++...++|+++++||+|+...
T Consensus 147 ~F~~~r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~~ 202 (587)
T TIGR00487 147 AFTSMRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKPEA 202 (587)
T ss_pred chhhHHHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcccccC
Confidence 99999999999999999999999999999999999998899999999999999754
No 46
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.93 E-value=4e-26 Score=233.83 Aligned_cols=134 Identities=38% Similarity=0.530 Sum_probs=119.5
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCCCccccc--CCceeeccChhhhhhcceeeeeeEEEEE--EcCeEEEEEcCC
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKL--AGKLRFMDYLDEEQRRAITMKSSSIALH--YKDYAINLIDSP 82 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~--~g~~~~~d~~~~E~~rgiti~~~~i~~~--~~~~~inlIDTP 82 (876)
+++|||+++||+|||||||+++|++. .+.+.... .+..+++|..+.|++||+|+..+...+. +..+.++|||||
T Consensus 1 k~~~~I~i~G~~~sGKTTL~~~L~~~--~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtP 78 (188)
T PF00009_consen 1 KNIRNIAIIGHVDSGKTTLLGALLGK--AGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTP 78 (188)
T ss_dssp STEEEEEEEESTTSSHHHHHHHHHHH--HTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEES
T ss_pred CCEEEEEEECCCCCCcEeechhhhhh--ccccccccccccccccccccchhhhcccccccccccccccccccceeecccc
Confidence 36899999999999999999999999 55554321 0123468999999999999999999999 999999999999
Q ss_pred CCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccccc
Q 047363 83 GHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLISE 142 (876)
Q Consensus 83 Gh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~~e 142 (876)
||.+|..++.++++.+|+||+|||+.+|+..++..+++.+...++|+++|+||+|+...+
T Consensus 79 G~~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~~~~ 138 (188)
T PF00009_consen 79 GHEDFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLIEKE 138 (188)
T ss_dssp SSHHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSSHHH
T ss_pred cccceeecccceecccccceeeeecccccccccccccccccccccceEEeeeeccchhhh
Confidence 999999999999999999999999999999999999999999999999999999998443
No 47
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.93 E-value=3.2e-24 Score=248.81 Aligned_cols=132 Identities=23% Similarity=0.301 Sum_probs=117.5
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCCCccccc----------CCce-------eeccChhhhhhcceeeeeeEEEE
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKL----------AGKL-------RFMDYLDEEQRRAITMKSSSIAL 69 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~----------~g~~-------~~~d~~~~E~~rgiti~~~~i~~ 69 (876)
....||+|+||+|+|||||+++|++. .|.+..+. .|+. +++|..++|++||+|++.....+
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~--~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~ 102 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHD--TKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYF 102 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHh--cCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEe
Confidence 45689999999999999999999999 77776521 2332 47999999999999999999999
Q ss_pred EEcCeEEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCC-cEEEEecccccc
Q 047363 70 HYKDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLT-PCLVLNKIDRLI 140 (876)
Q Consensus 70 ~~~~~~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip-~ilviNKiD~~~ 140 (876)
.++++.++|||||||.+|..++..+++.+|+||+|||+.+|+..||...+..+...+++ +|+|+||+|+..
T Consensus 103 ~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD~~~ 174 (474)
T PRK05124 103 STEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDLVD 174 (474)
T ss_pred ccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeecccc
Confidence 99999999999999999999999999999999999999999999999988888877765 577999999974
No 48
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.93 E-value=6.8e-24 Score=242.27 Aligned_cols=128 Identities=26% Similarity=0.312 Sum_probs=115.9
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhhCCCCccccc----------CCc-------eeeccChhhhhhcceeeeeeEEEEEEcC
Q 047363 11 NISILAHVDHGKTTLADHLIAATGGGLLHPKL----------AGK-------LRFMDYLDEEQRRAITMKSSSIALHYKD 73 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~----------~g~-------~~~~d~~~~E~~rgiti~~~~i~~~~~~ 73 (876)
+|+|+||+|||||||+++|++. .|.++.+. .|+ .+++|..++|++||+|++.....+.+++
T Consensus 2 ~~~~vGhvd~GKSTL~~~ll~~--~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~ 79 (406)
T TIGR02034 2 RFLTCGSVDDGKSTLIGRLLHD--TKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDK 79 (406)
T ss_pred eEEEECCCCCCchhhhHHHHHH--cCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCC
Confidence 7999999999999999999999 77776532 232 2578999999999999999999999999
Q ss_pred eEEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCC-cEEEEecccccc
Q 047363 74 YAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLT-PCLVLNKIDRLI 140 (876)
Q Consensus 74 ~~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip-~ilviNKiD~~~ 140 (876)
+.++|||||||.+|..++..++..+|+||+|||+.+|+..||++.+..+...++| +|+|+||+|+..
T Consensus 80 ~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~~ 147 (406)
T TIGR02034 80 RKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLVD 147 (406)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEeccccc
Confidence 9999999999999999999999999999999999999999999999998888886 567999999974
No 49
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.92 E-value=1.4e-23 Score=241.55 Aligned_cols=133 Identities=29% Similarity=0.479 Sum_probs=113.3
Q ss_pred CCCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccc----------cCCc-----eeeccChhhhhhcceeeeeeEEEEE
Q 047363 6 TRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPK----------LAGK-----LRFMDYLDEEQRRAITMKSSSIALH 70 (876)
Q Consensus 6 ~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~----------~~g~-----~~~~d~~~~E~~rgiti~~~~i~~~ 70 (876)
....+||+++||+|||||||+++|++. .|.++.+ ..|+ .+++|..++|++||+|++.....+.
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~--~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~ 81 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYK--CGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFE 81 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHH--hCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEc
Confidence 356799999999999999999999998 7766532 1122 2468999999999999999999999
Q ss_pred EcCeEEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCc---cccchHHHHHHhhhhcC-CcEEEEecccccc
Q 047363 71 YKDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEG---VHIQTHAVLRQSWIEKL-TPCLVLNKIDRLI 140 (876)
Q Consensus 71 ~~~~~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~eg---v~~~t~~~l~~~~~~~i-p~ilviNKiD~~~ 140 (876)
++++.++|||||||.+|...+..+++.+|++|+|||+.++ ...++...+..+...++ |+|+|+||+|+..
T Consensus 82 ~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~ 155 (426)
T TIGR00483 82 TDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVN 155 (426)
T ss_pred cCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccC
Confidence 9999999999999999999999999999999999999999 67777766666666665 5677999999964
No 50
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=5.8e-23 Score=224.69 Aligned_cols=148 Identities=30% Similarity=0.429 Sum_probs=126.1
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCCCccccc----------CCc-----eeeccChhhhhhcceeeeeeEEEEEE
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKL----------AGK-----LRFMDYLDEEQRRAITMKSSSIALHY 71 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~----------~g~-----~~~~d~~~~E~~rgiti~~~~i~~~~ 71 (876)
...-|++++||+|||||||+.+|++. .|.++++. .|+ .+++|...+|++||+|+..+...+..
T Consensus 5 Kph~nl~~iGHVD~GKSTl~GrLly~--~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet 82 (428)
T COG5256 5 KPHLNLVFIGHVDAGKSTLVGRLLYD--LGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET 82 (428)
T ss_pred CCceEEEEEcCCCCCchhhhhhhHHH--hCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec
Confidence 34579999999999999999999999 88887531 232 26799999999999999999999999
Q ss_pred cCeEEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCc-------cccchHHHHHHhhhhcCCcE-EEEeccccccccc
Q 047363 72 KDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEG-------VHIQTHAVLRQSWIEKLTPC-LVLNKIDRLISEL 143 (876)
Q Consensus 72 ~~~~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~eg-------v~~~t~~~l~~~~~~~ip~i-lviNKiD~~~~e~ 143 (876)
+.+.++|+|||||.||..++..+...||.|||||||..| +..||.+.+-.+...++..+ +++||||...-+
T Consensus 83 ~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~wd- 161 (428)
T COG5256 83 DKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVSWD- 161 (428)
T ss_pred CCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccccccC-
Confidence 999999999999999999999999999999999999998 89999999888888898765 568999998633
Q ss_pred ccChHHHHHHHHHHHHHhhhh
Q 047363 144 KLTPLEAYNRLLRIVHEVNGI 164 (876)
Q Consensus 144 ~~~~~~~~~~l~~~l~~vn~~ 164 (876)
.++++.+..++..+
T Consensus 162 -------e~rf~ei~~~v~~l 175 (428)
T COG5256 162 -------EERFEEIVSEVSKL 175 (428)
T ss_pred -------HHHHHHHHHHHHHH
Confidence 14555555555543
No 51
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.91 E-value=3.9e-23 Score=247.15 Aligned_cols=118 Identities=30% Similarity=0.421 Sum_probs=99.9
Q ss_pred CCCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEc----CeEEEEEcC
Q 047363 6 TRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYK----DYAINLIDS 81 (876)
Q Consensus 6 ~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~----~~~inlIDT 81 (876)
..+.++|+|+||+|||||||+++|... .... ...+|+|.......+.+. ++.++||||
T Consensus 241 ~~r~p~V~IvGhvdvGKTSLld~L~~~--~~~~----------------~e~~GiTq~i~~~~v~~~~~~~~~kItfiDT 302 (742)
T CHL00189 241 INRPPIVTILGHVDHGKTTLLDKIRKT--QIAQ----------------KEAGGITQKIGAYEVEFEYKDENQKIVFLDT 302 (742)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHhc--cCcc----------------ccCCccccccceEEEEEEecCCceEEEEEEC
Confidence 357899999999999999999999765 3221 112567766555555443 589999999
Q ss_pred CCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEeccccccc
Q 047363 82 PGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLIS 141 (876)
Q Consensus 82 PGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~~ 141 (876)
|||.+|...+.++++.+|++|+|||+.+|+..||...|+.+...++|+|+|+||+|+...
T Consensus 303 PGhe~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~~ 362 (742)
T CHL00189 303 PGHEAFSSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKANA 362 (742)
T ss_pred CcHHHHHHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCcccc
Confidence 999999999999999999999999999999999999999999999999999999999764
No 52
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.91 E-value=1.3e-23 Score=216.64 Aligned_cols=128 Identities=29% Similarity=0.375 Sum_probs=112.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccchH
Q 047363 10 RNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFCS 89 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~~ 89 (876)
.||+++||+|||||||+++|++.+. ...........++|+.+.|++||+|+.++.+.+.++++.++|+|||||.+|..
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~--~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~ 80 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLA--KKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIK 80 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH--hcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHH
Confidence 6899999999999999999998721 11100011224689999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCC-cEEEEeccccc
Q 047363 90 EVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLT-PCLVLNKIDRL 139 (876)
Q Consensus 90 e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip-~ilviNKiD~~ 139 (876)
++..+++.+|+|++|||+.+|+..+++.+++.+.+.++| +|+|+||+|+.
T Consensus 81 ~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~ 131 (195)
T cd01884 81 NMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMV 131 (195)
T ss_pred HHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCC
Confidence 999999999999999999999999999999999999998 56899999996
No 53
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=3.4e-23 Score=215.49 Aligned_cols=133 Identities=28% Similarity=0.360 Sum_probs=113.8
Q ss_pred CCCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCc
Q 047363 6 TRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHM 85 (876)
Q Consensus 6 ~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~ 85 (876)
....-||+.+||+|||||||+-++......... ..+..+.-.|..++|++|||||.++.+.+...++.+-.+|||||.
T Consensus 9 ~kphVNigtiGHvdHGKTTLtaAit~~la~~~~--~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHa 86 (394)
T COG0050 9 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGG--AEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHA 86 (394)
T ss_pred CCCeeEEEEeccccCchhhHHHHHHHHHHhhcc--ccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChH
Confidence 345679999999999999999999776221100 011223346888999999999999999999999999999999999
Q ss_pred cchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEE-EEecccccc
Q 047363 86 DFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCL-VLNKIDRLI 140 (876)
Q Consensus 86 dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~il-viNKiD~~~ 140 (876)
||...+..+...+|||||||.|.+|.++||++.+-.+++.++|.|+ |+||+|+..
T Consensus 87 DYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvd 142 (394)
T COG0050 87 DYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVD 142 (394)
T ss_pred HHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEecccccC
Confidence 9999999999999999999999999999999999999999998765 789999986
No 54
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.90 E-value=6.3e-22 Score=238.18 Aligned_cols=130 Identities=25% Similarity=0.322 Sum_probs=115.4
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccc----------cCCc-------eeeccChhhhhhcceeeeeeEEEEEE
Q 047363 9 IRNISILAHVDHGKTTLADHLIAATGGGLLHPK----------LAGK-------LRFMDYLDEEQRRAITMKSSSIALHY 71 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~----------~~g~-------~~~~d~~~~E~~rgiti~~~~i~~~~ 71 (876)
..||+|+||+|||||||+++|++. .|.+..+ ..|+ ..++|..++|++||+|+..+...+.+
T Consensus 24 ~~~i~iiGh~~~GKSTL~~~Ll~~--~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~ 101 (632)
T PRK05506 24 LLRFITCGSVDDGKSTLIGRLLYD--SKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT 101 (632)
T ss_pred eeEEEEECCCCCChHHHHHHHHHH--hCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc
Confidence 457999999999999999999999 7777632 2343 24789999999999999999999999
Q ss_pred cCeEEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCC-cEEEEecccccc
Q 047363 72 KDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLT-PCLVLNKIDRLI 140 (876)
Q Consensus 72 ~~~~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip-~ilviNKiD~~~ 140 (876)
+++.++|||||||.+|...+..++..+|++|+|||+.+|+..|++..+..+...++| +|+|+||+|+..
T Consensus 102 ~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D~~~ 171 (632)
T PRK05506 102 PKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMDLVD 171 (632)
T ss_pred CCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEeccccc
Confidence 999999999999999999999999999999999999999999999998888888865 567999999964
No 55
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.90 E-value=7.4e-22 Score=226.84 Aligned_cols=118 Identities=30% Similarity=0.345 Sum_probs=100.9
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEE---------------c
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHY---------------K 72 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~---------------~ 72 (876)
...||+++||+|||||||+.+|++. .+|..++|++||+|++.....+.+ .
T Consensus 33 ~~~~ig~~GHVDhGKTtLv~aLtg~---------------~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~ 97 (460)
T PTZ00327 33 ATINIGTIGHVAHGKSTVVKALSGV---------------KTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYG 97 (460)
T ss_pred CcEEEEEEccCCCCHHHHHHHHhCC---------------CcccchhhHHhCCchhccccccccccCcccCCcccccccC
Confidence 3478999999999999999999644 246778999999999877665421 1
Q ss_pred ------------------CeEEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCc-cccchHHHHHHhhhhcCC-cEEE
Q 047363 73 ------------------DYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEG-VHIQTHAVLRQSWIEKLT-PCLV 132 (876)
Q Consensus 73 ------------------~~~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~eg-v~~~t~~~l~~~~~~~ip-~ilv 132 (876)
.+.++|||||||.+|..++.+++..+|++++|||+.+| ++.||.+.+..+...+++ +|+|
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVv 177 (460)
T PTZ00327 98 SSKPDNPPCPGCGHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIIL 177 (460)
T ss_pred CCcccccccccccccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEE
Confidence 14799999999999999999999999999999999997 799999998888888887 5679
Q ss_pred Eecccccc
Q 047363 133 LNKIDRLI 140 (876)
Q Consensus 133 iNKiD~~~ 140 (876)
+||+|+..
T Consensus 178 lNKiDlv~ 185 (460)
T PTZ00327 178 QNKIDLVK 185 (460)
T ss_pred EecccccC
Confidence 99999974
No 56
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=1.4e-22 Score=214.40 Aligned_cols=129 Identities=29% Similarity=0.365 Sum_probs=110.4
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhhC-CCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccc
Q 047363 9 IRNISILAHVDHGKTTLADHLIAATG-GGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDF 87 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~t~-~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF 87 (876)
--||+-|||+|||||||+-++..... .|. ....++.-.|..++|+.|||||....+.+....+.+--+|||||.||
T Consensus 54 HvNVGTIGHVDHGKTTLTaAITkila~~g~---A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADY 130 (449)
T KOG0460|consen 54 HVNVGTIGHVDHGKTTLTAAITKILAEKGG---AKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADY 130 (449)
T ss_pred cccccccccccCCchhHHHHHHHHHHhccc---cccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHH
Confidence 46899999999999999999876511 111 01122234688999999999999988888888899999999999999
Q ss_pred hHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEE-EEecccccc
Q 047363 88 CSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCL-VLNKIDRLI 140 (876)
Q Consensus 88 ~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~il-viNKiD~~~ 140 (876)
...+..+....||||+||.+.+|.++||++.+-.+++.+++.|+ |+||.|...
T Consensus 131 IKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~~ivvfiNKvD~V~ 184 (449)
T KOG0460|consen 131 IKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGVKHIVVFINKVDLVD 184 (449)
T ss_pred HHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHHcCCceEEEEEecccccC
Confidence 99999999999999999999999999999999999999998764 799999983
No 57
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.88 E-value=7.8e-21 Score=217.29 Aligned_cols=120 Identities=32% Similarity=0.427 Sum_probs=101.8
Q ss_pred CCCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEc-------------
Q 047363 6 TRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYK------------- 72 (876)
Q Consensus 6 ~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~------------- 72 (876)
...-.||+++||+|||||||+++|... ++|..++|++||+|+..+...+.+.
T Consensus 6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~~---------------~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~ 70 (411)
T PRK04000 6 VQPEVNIGMVGHVDHGKTTLVQALTGV---------------WTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTT 70 (411)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHhhCe---------------ecccCHhHHhcCcEEEecccccccccccccCccccccc
Confidence 344589999999999999999999321 5788999999999998775443331
Q ss_pred -------------CeEEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCcc-ccchHHHHHHhhhhcCC-cEEEEeccc
Q 047363 73 -------------DYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGV-HIQTHAVLRQSWIEKLT-PCLVLNKID 137 (876)
Q Consensus 73 -------------~~~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv-~~~t~~~l~~~~~~~ip-~ilviNKiD 137 (876)
.+.++|||||||.+|..++..++..+|++++|+|+.++. ..++...+..+...+++ +++|+||+|
T Consensus 71 ~~~~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~D 150 (411)
T PRK04000 71 EPKCPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKID 150 (411)
T ss_pred cccccccccccccccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeec
Confidence 268999999999999999999999999999999999998 78888888888777774 788899999
Q ss_pred ccc
Q 047363 138 RLI 140 (876)
Q Consensus 138 ~~~ 140 (876)
+..
T Consensus 151 l~~ 153 (411)
T PRK04000 151 LVS 153 (411)
T ss_pred ccc
Confidence 974
No 58
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.88 E-value=4.1e-22 Score=209.38 Aligned_cols=129 Identities=29% Similarity=0.414 Sum_probs=112.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhhCCCCccccc----------CCce-----eeccChhhhhhcceeeeeeEEEEEEcCeE
Q 047363 11 NISILAHVDHGKTTLADHLIAATGGGLLHPKL----------AGKL-----RFMDYLDEEQRRAITMKSSSIALHYKDYA 75 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~----------~g~~-----~~~d~~~~E~~rgiti~~~~i~~~~~~~~ 75 (876)
||+|+||+|||||||+++|++. .|.+++.. .|.. +++|+.+.|++||+|+......+.++++.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~--~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~ 78 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYL--LGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYR 78 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHH--hcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeE
Confidence 7999999999999999999999 77776432 1221 37899999999999999999999999999
Q ss_pred EEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCC-------ccccchHHHHHHhhhhcC-CcEEEEeccccccc
Q 047363 76 INLIDSPGHMDFCSEVSTAARLSDGALVLVDAVE-------GVHIQTHAVLRQSWIEKL-TPCLVLNKIDRLIS 141 (876)
Q Consensus 76 inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~e-------gv~~~t~~~l~~~~~~~i-p~ilviNKiD~~~~ 141 (876)
+++||||||.+|..++..+++.+|++|+|||+.+ +...++...+..+...++ |+++|+||+|+...
T Consensus 79 i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl~~~ 152 (219)
T cd01883 79 FTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDVTV 152 (219)
T ss_pred EEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEccccccc
Confidence 9999999999999999999999999999999998 566788888877777774 66779999999843
No 59
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.87 E-value=8.5e-21 Score=225.87 Aligned_cols=115 Identities=31% Similarity=0.373 Sum_probs=101.7
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEE-cCeEEEEEcCCCCccchH
Q 047363 11 NISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHY-KDYAINLIDSPGHMDFCS 89 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~-~~~~inlIDTPGh~dF~~ 89 (876)
.|+++||+|||||||+++|.+. .+|..++|++||+|+......+.. ++..++|||||||.+|..
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~---------------~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~ 66 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGV---------------NADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLS 66 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCC---------------CCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHH
Confidence 5899999999999999999543 146778899999999887776655 357899999999999999
Q ss_pred HHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCc-EEEEecccccc
Q 047363 90 EVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTP-CLVLNKIDRLI 140 (876)
Q Consensus 90 e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~-ilviNKiD~~~ 140 (876)
.+..++..+|++++|||+.+|+..||...+..+...++|. |+|+||+|+..
T Consensus 67 ~m~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~ 118 (614)
T PRK10512 67 NMLAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVD 118 (614)
T ss_pred HHHHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCC
Confidence 9999999999999999999999999999999888888886 68999999964
No 60
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.87 E-value=4.5e-20 Score=211.06 Aligned_cols=118 Identities=32% Similarity=0.422 Sum_probs=100.5
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEE----------------
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHY---------------- 71 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~---------------- 71 (876)
.-.||+++||+|||||||+++|... ++|..++|++||+|++.....+.+
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~~---------------~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTGV---------------WTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEP 67 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhCe---------------ecccCHhHHHcCceeEecccccccccccccCccccccccc
Confidence 3468999999999999999999432 468889999999999887554331
Q ss_pred ----------cCeEEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCcc-ccchHHHHHHhhhhcCC-cEEEEeccccc
Q 047363 72 ----------KDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGV-HIQTHAVLRQSWIEKLT-PCLVLNKIDRL 139 (876)
Q Consensus 72 ----------~~~~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv-~~~t~~~l~~~~~~~ip-~ilviNKiD~~ 139 (876)
..+.++|||||||.+|...+..++..+|++|+|||+.+|. ..++.+.+..+...+++ +++|+||+|+.
T Consensus 68 ~~~~~~~~~~~~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~ 147 (406)
T TIGR03680 68 VCPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLV 147 (406)
T ss_pred cccccccccccccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccC
Confidence 1368999999999999999999999999999999999998 88998888888777765 68889999997
Q ss_pred c
Q 047363 140 I 140 (876)
Q Consensus 140 ~ 140 (876)
.
T Consensus 148 ~ 148 (406)
T TIGR03680 148 S 148 (406)
T ss_pred C
Confidence 4
No 61
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.85 E-value=1.4e-19 Score=214.93 Aligned_cols=115 Identities=37% Similarity=0.468 Sum_probs=105.0
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccchHH
Q 047363 11 NISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFCSE 90 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~~e 90 (876)
||+++||+|||||||+++|.+. . +|..+.|.+||+|+......+.+.++.++|||||||.+|...
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~--~-------------~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~ 66 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGI--A-------------ADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISN 66 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCc--c-------------CcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHH
Confidence 7999999999999999999644 1 356678889999999988888888899999999999999999
Q ss_pred HHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCC-cEEEEecccccc
Q 047363 91 VSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLT-PCLVLNKIDRLI 140 (876)
Q Consensus 91 ~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip-~ilviNKiD~~~ 140 (876)
+..++..+|++|+|||+.+|+..|+.+.+..+...++| +++|+||+|+..
T Consensus 67 ~~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~ 117 (581)
T TIGR00475 67 AIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVN 117 (581)
T ss_pred HHhhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCC
Confidence 99999999999999999999999999988888888999 999999999975
No 62
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.84 E-value=4e-21 Score=200.24 Aligned_cols=128 Identities=24% Similarity=0.280 Sum_probs=112.5
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhhCCCCccccc------------C---CceeeccChhhhhhcceeeeeeEEEEEEcCeE
Q 047363 11 NISILAHVDHGKTTLADHLIAATGGGLLHPKL------------A---GKLRFMDYLDEEQRRAITMKSSSIALHYKDYA 75 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~------------~---g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~ 75 (876)
||+|+||+|||||||+++|++. .|.+.... . ...+++|..+.|++||+|+......+.+++..
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~ 78 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYD--SKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRK 78 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHH--cCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCce
Confidence 6899999999999999999999 77766311 0 12367999999999999999999999999999
Q ss_pred EEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCC-cEEEEecccccc
Q 047363 76 INLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLT-PCLVLNKIDRLI 140 (876)
Q Consensus 76 inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip-~ilviNKiD~~~ 140 (876)
++|||||||.+|..++..+++.+|++|+|+|+.++...++...+..+...++| +|+|+||+|+..
T Consensus 79 ~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~ 144 (208)
T cd04166 79 FIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVD 144 (208)
T ss_pred EEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhccc
Confidence 99999999999999999999999999999999999988888888888777766 466899999974
No 63
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.84 E-value=4.4e-20 Score=190.00 Aligned_cols=132 Identities=46% Similarity=0.656 Sum_probs=114.4
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccc
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDF 87 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF 87 (876)
+||||+++|++|+|||||+++|++. .+.+........+.+|+.+.|..+|+|+....+.+.++.+.+++||||||.+|
T Consensus 1 ~~r~i~ivG~~~~GKTsL~~~l~~~--~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~ 78 (194)
T cd01891 1 DIRNIAIIAHVDHGKTTLVDALLKQ--SGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADF 78 (194)
T ss_pred CccEEEEEecCCCCHHHHHHHHHHH--cCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHH
Confidence 4899999999999999999999986 45444322112356788888999999999999999999999999999999999
Q ss_pred hHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEeccccccc
Q 047363 88 CSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLIS 141 (876)
Q Consensus 88 ~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~~ 141 (876)
...+..+++.+|++++|+|+.++...++..+++.+...++|+++|+||+|+...
T Consensus 79 ~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~ 132 (194)
T cd01891 79 GGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPDA 132 (194)
T ss_pred HHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCCCC
Confidence 999999999999999999999988777777788877789999999999999753
No 64
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=1.6e-18 Score=196.01 Aligned_cols=151 Identities=29% Similarity=0.409 Sum_probs=125.0
Q ss_pred CCCCceEEEEEeCCCCcHHHHHHHHHHhhCCCCccccc----------CCc-----eeeccChhhhhhcceeeeeeEEEE
Q 047363 5 DTRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKL----------AGK-----LRFMDYLDEEQRRAITMKSSSIAL 69 (876)
Q Consensus 5 ~~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~----------~g~-----~~~~d~~~~E~~rgiti~~~~i~~ 69 (876)
.+...-|.+++||+++|||||+.+|++. .|.|+.+. .|+ .+++|...+|++||+|+......+
T Consensus 173 ~~k~~l~lvv~GhVdaGKSTLmG~lLyd--Lg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~f 250 (603)
T KOG0458|consen 173 DPKDHLNLVVLGHVDAGKSTLMGHLLYD--LGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWF 250 (603)
T ss_pred CCccceEEEEEeccccchhhhhhHHHHH--hcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEE
Confidence 4445688999999999999999999999 88886432 232 367999999999999999999999
Q ss_pred EEcCeEEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCcc-------ccchHHHHHHhhhhcCCcE-EEEeccccccc
Q 047363 70 HYKDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGV-------HIQTHAVLRQSWIEKLTPC-LVLNKIDRLIS 141 (876)
Q Consensus 70 ~~~~~~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv-------~~~t~~~l~~~~~~~ip~i-lviNKiD~~~~ 141 (876)
.-..+.++|+|+|||-||..++..+...+|.||||||+.-|. ..||.++...++..|+.-+ +++||||....
T Consensus 251 es~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qlivaiNKmD~V~W 330 (603)
T KOG0458|consen 251 ESKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVAINKMDLVSW 330 (603)
T ss_pred ecCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEEEEeecccccCc
Confidence 999999999999999999999999999999999999998653 4688988888888898665 57999999875
Q ss_pred ccccChHHHHHHHHHHHHHhhhhh
Q 047363 142 ELKLTPLEAYNRLLRIVHEVNGIM 165 (876)
Q Consensus 142 e~~~~~~~~~~~l~~~l~~vn~~~ 165 (876)
+ .++|..+...++.++
T Consensus 331 s--------q~RF~eIk~~l~~fL 346 (603)
T KOG0458|consen 331 S--------QDRFEEIKNKLSSFL 346 (603)
T ss_pred c--------HHHHHHHHHHHHHHH
Confidence 4 145555555444444
No 65
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.80 E-value=4.3e-19 Score=179.15 Aligned_cols=128 Identities=45% Similarity=0.666 Sum_probs=110.7
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEE-----cCeEEEEEcCCCC
Q 047363 10 RNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHY-----KDYAINLIDSPGH 84 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~-----~~~~inlIDTPGh 84 (876)
|||+++|++|+|||||+++|+.. .|.+.... ..-.+.++...|.++|+|+....+.+.| .++.++|||||||
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~--~~~~~~~~-~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 77 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLEL--TGTVSKRE-MKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGH 77 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHH--hCCCCcCC-CceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCC
Confidence 89999999999999999999998 66554321 2235788888999999999988877766 4678999999999
Q ss_pred ccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccc
Q 047363 85 MDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 85 ~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~ 140 (876)
.+|...+..+++.+|++|+|+|+.++...++...|..+...++|+++|+||+|+..
T Consensus 78 ~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~ 133 (179)
T cd01890 78 VDFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPS 133 (179)
T ss_pred hhhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCc
Confidence 99999999999999999999999998888887777777778899999999999864
No 66
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.80 E-value=6.6e-18 Score=200.25 Aligned_cols=127 Identities=31% Similarity=0.349 Sum_probs=90.1
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCcee------eccChhhhhhcceeeeeeEEEEEEcCeEEEEEc
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLR------FMDYLDEEQRRAITMKSSSIALHYKDYAINLID 80 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~------~~d~~~~E~~rgiti~~~~i~~~~~~~~inlID 80 (876)
.|...|+|+||+|||||||+++|.+. . +....+|..+ +.+....+..+|.+.+.....+.+ ..++|||
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~--~--v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~iD 77 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRGT--A--VAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKI--PGLLFID 77 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCc--c--cccCCCCceEEeeceeeccccccccccceecccccccccc--CCEEEEE
Confidence 35678999999999999999999654 2 1111122211 111111111122221110011111 1379999
Q ss_pred CCCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEeccccc
Q 047363 81 SPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRL 139 (876)
Q Consensus 81 TPGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~ 139 (876)
||||.+|...+.++++.+|++|+|+|+.+|+..++...+..+...++|+++++||+|+.
T Consensus 78 TPG~e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~ 136 (586)
T PRK04004 78 TPGHEAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRI 136 (586)
T ss_pred CCChHHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCc
Confidence 99999999999999999999999999999999999999988888899999999999986
No 67
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=1.2e-17 Score=176.41 Aligned_cols=121 Identities=34% Similarity=0.431 Sum_probs=102.0
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEc--------------
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYK-------------- 72 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~-------------- 72 (876)
+.--||+++||++||||||+.+|.+- ++|...+|.+|||||+.........
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGv---------------wT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~ 72 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGV---------------WTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTE 72 (415)
T ss_pred CcceEeeeeeecccchhhheehhhce---------------eeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccC
Confidence 34589999999999999999999544 5678889999999999876644321
Q ss_pred ------------CeEEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCcc-ccchHHHHHHhhhhcCCcEE-EEecccc
Q 047363 73 ------------DYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGV-HIQTHAVLRQSWIEKLTPCL-VLNKIDR 138 (876)
Q Consensus 73 ------------~~~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv-~~~t~~~l~~~~~~~ip~il-viNKiD~ 138 (876)
-+.+.|+|+|||.-+..-+.++....|||||||.|.+.. ++||.+.+-.+.-.++.-|+ +=||+|+
T Consensus 73 ~~C~~cg~~~~l~R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDl 152 (415)
T COG5257 73 PKCPNCGAETELVRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDL 152 (415)
T ss_pred CCCCCCCCCccEEEEEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEecccce
Confidence 167999999999999999999999999999999999875 78999988888878886655 5699999
Q ss_pred cccc
Q 047363 139 LISE 142 (876)
Q Consensus 139 ~~~e 142 (876)
...|
T Consensus 153 V~~E 156 (415)
T COG5257 153 VSRE 156 (415)
T ss_pred ecHH
Confidence 8643
No 68
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.78 E-value=1.9e-18 Score=179.38 Aligned_cols=116 Identities=33% Similarity=0.388 Sum_probs=99.6
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEc-----------------
Q 047363 10 RNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYK----------------- 72 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~----------------- 72 (876)
+||+++||.|||||||+++|... +.|..+.|.+||+|++.+...+.|.
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~---------------~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGV---------------WTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKE 65 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC---------------CCCCCCeeEEcCCceeecccccccccccCcCCCCcccccccc
Confidence 58999999999999999999432 3477788899999999888877764
Q ss_pred ----------C------eEEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCc-cccchHHHHHHhhhhcC-CcEEEEe
Q 047363 73 ----------D------YAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEG-VHIQTHAVLRQSWIEKL-TPCLVLN 134 (876)
Q Consensus 73 ----------~------~~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~eg-v~~~t~~~l~~~~~~~i-p~ilviN 134 (876)
+ +.++|||||||.+|..++..+++.+|++|+|+|+.++ ...++...+..+...++ |+++|+|
T Consensus 66 ~~~~~~~~~~~~~~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvN 145 (203)
T cd01888 66 DSPECECPGCGGETKLVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQN 145 (203)
T ss_pred ccccccccccCCccccccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEE
Confidence 3 7899999999999999999999999999999999984 66788888877766666 5788999
Q ss_pred cccccc
Q 047363 135 KIDRLI 140 (876)
Q Consensus 135 KiD~~~ 140 (876)
|+|+..
T Consensus 146 K~Dl~~ 151 (203)
T cd01888 146 KIDLVK 151 (203)
T ss_pred chhccC
Confidence 999964
No 69
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.78 E-value=2.2e-18 Score=184.08 Aligned_cols=133 Identities=24% Similarity=0.318 Sum_probs=113.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhhCCCCcc-----------ccc--CCc-e---eeccChhhhhhcceeeeeeEEEEE
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAATGGGLLH-----------PKL--AGK-L---RFMDYLDEEQRRAITMKSSSIALH 70 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~-----------~~~--~g~-~---~~~d~~~~E~~rgiti~~~~i~~~ 70 (876)
..-+++.+|+++.|||||+.+|++. +..+- ++. .|+ + -.+|-...|++.||||..+...|.
T Consensus 5 ~lLRfiTcGSVDDGKSTLIGRLL~D--tk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs 82 (431)
T COG2895 5 SLLRFITCGSVDDGKSTLIGRLLYD--TKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS 82 (431)
T ss_pred cceeEEEeccccCcchhhhhhhhhc--chhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence 4567889999999999999999998 33331 100 111 1 347889999999999999999999
Q ss_pred EcCeEEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEE-EEecccccccc
Q 047363 71 YKDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCL-VLNKIDRLISE 142 (876)
Q Consensus 71 ~~~~~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~il-viNKiD~~~~e 142 (876)
...++|.+.|||||+.|...|..+..-||.||++|||..|+..||++.--.+...+++.++ .+||||+.+-+
T Consensus 83 T~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVNKmDLvdy~ 155 (431)
T COG2895 83 TEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVAVNKMDLVDYS 155 (431)
T ss_pred cccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCCcEEEEEEeeecccccC
Confidence 9999999999999999999999999999999999999999999999988888888998765 68999998643
No 70
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.76 E-value=2.8e-18 Score=176.26 Aligned_cols=119 Identities=33% Similarity=0.426 Sum_probs=103.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEc--------------CeEE
Q 047363 11 NISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYK--------------DYAI 76 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~--------------~~~i 76 (876)
||+++||+|+|||||+++|+.. .+ ...+|....|++||+|+.....++.+. ++.+
T Consensus 2 ~i~i~G~~~~GKstLi~~l~~~--~~---------~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSEI--AS---------TAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQI 70 (192)
T ss_pred eEEEEecCCCCHHHHHHHHHhc--cc---------hhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceE
Confidence 8999999999999999999875 21 234677888999999999888777776 7899
Q ss_pred EEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccc
Q 047363 77 NLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 77 nlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~ 140 (876)
++||||||.+|...+..+++.+|++++|+|+.++...++...+..+...++|+++|+||+|+..
T Consensus 71 ~i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~ 134 (192)
T cd01889 71 TLVDCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIP 134 (192)
T ss_pred EEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccCC
Confidence 9999999999999999999999999999999999888887766666667889999999999974
No 71
>PF14492 EFG_II: Elongation Factor G, domain II; PDB: 1WDT_A 2DY1_A 2XEX_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y 2XUY_Y 3J0E_H ....
Probab=99.75 E-value=2.3e-18 Score=149.87 Aligned_cols=73 Identities=38% Similarity=0.586 Sum_probs=68.1
Q ss_pred CCceeEEEEeeCCCccHHHHHHHHHHHHhcCCceEEEEc-cCCcEEEEecchhHHHHHHHHHHhhhccceEEEeC
Q 047363 534 VSPTLRVAIEPSDPADMGALMKGLRLLNRADPFVEVSVS-SRGENVLAAAGEVHLERCIKDLKERFAKVSLEVSP 607 (876)
Q Consensus 534 ~~Pvv~vaIEP~~~~d~~kL~~gL~~L~~~DP~l~v~~~-etGE~vl~g~GElHLe~~l~dL~~~fa~vei~vs~ 607 (876)
|+|+++++|+|.+++|.++|.+||++|.++||++.+.++ +|||++|+|+||+|||+|+++|+++| ||+|+++.
T Consensus 2 p~Pv~~~~i~p~~~~d~~kl~~aL~~l~~eDP~l~~~~d~et~e~~l~g~Gelhlev~~~~L~~~~-~v~v~~~~ 75 (75)
T PF14492_consen 2 PPPVLSVAIEPKNKEDEPKLSEALQKLSEEDPSLRVERDEETGELILSGMGELHLEVLLERLKRRF-GVEVEFGK 75 (75)
T ss_dssp SS-SEEEEEEESSHHHHHHHHHHHHHHHHH-TTSEEEEETTTSEEEEEESSHHHHHHHHHHHHHTT-CEBEEEE-
T ss_pred CCCeEEEEEEECCHhHHHHHHHHHHHHHhcCCeEEEEEcchhceEEEEECCHHHHHHHHHHHHHHH-CCeeEecC
Confidence 689999999999999999999999999999999999995 79999999999999999999999999 99999873
No 72
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.75 E-value=2.9e-17 Score=166.39 Aligned_cols=128 Identities=43% Similarity=0.615 Sum_probs=109.7
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccchHH
Q 047363 11 NISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFCSE 90 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~~e 90 (876)
||+|+|.+|+|||||+++|+.. .............+++....+..+|+++......+.+....++||||||+.+|...
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~ 78 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYV--TGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSE 78 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHh--cCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHH
Confidence 6899999999999999999988 43332222222245677778888999998888888888999999999999999999
Q ss_pred HHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccc
Q 047363 91 VSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 91 ~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~ 140 (876)
+..+++.+|++++|+|+.++...+....+..+...++|+++|+||+|+..
T Consensus 79 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~ 128 (189)
T cd00881 79 VIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVG 128 (189)
T ss_pred HHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcc
Confidence 99999999999999999998888888888888888999999999999985
No 73
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.75 E-value=5.2e-17 Score=179.48 Aligned_cols=116 Identities=35% Similarity=0.407 Sum_probs=108.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccchHH
Q 047363 11 NISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFCSE 90 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~~e 90 (876)
+|+..||.+||||||+..+.+. .+|..++|++||+|++....++...++.+.|||+|||++|...
T Consensus 2 ii~t~GhidHgkT~L~~altg~---------------~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~ 66 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGG---------------VTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISN 66 (447)
T ss_pred eEEEeeeeeccchhhhhhhccc---------------ccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHH
Confidence 5889999999999999999544 3588899999999999999999999999999999999999999
Q ss_pred HHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCc-EEEEeccccccc
Q 047363 91 VSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTP-CLVLNKIDRLIS 141 (876)
Q Consensus 91 ~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~-ilviNKiD~~~~ 141 (876)
+..++...|.|++|||+.+|+..||.+.+..+...+++. ++|+||+|+...
T Consensus 67 miag~~~~d~alLvV~~deGl~~qtgEhL~iLdllgi~~giivltk~D~~d~ 118 (447)
T COG3276 67 LLAGLGGIDYALLVVAADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRVDE 118 (447)
T ss_pred HHhhhcCCceEEEEEeCccCcchhhHHHHHHHHhcCCCceEEEEeccccccH
Confidence 999999999999999999999999999999999999999 889999999863
No 74
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=8.9e-18 Score=189.98 Aligned_cols=127 Identities=28% Similarity=0.370 Sum_probs=108.6
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEc---CeEEEEEcCCC
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYK---DYAINLIDSPG 83 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~---~~~inlIDTPG 83 (876)
.+.+-|+|+||+|||||||++.+-.. .+....+ -|||.+.....+.+. ...|.||||||
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t----~Va~~Ea--------------GGITQhIGA~~v~~~~~~~~~itFiDTPG 64 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKT----NVAAGEA--------------GGITQHIGAYQVPLDVIKIPGITFIDTPG 64 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcC----ccccccC--------------CceeeEeeeEEEEeccCCCceEEEEcCCc
Confidence 35678999999999999999999755 2322233 378888888888874 47999999999
Q ss_pred CccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccccccccChHHHHHHHH
Q 047363 84 HMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLISELKLTPLEAYNRLL 155 (876)
Q Consensus 84 h~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~~e~~~~~~~~~~~l~ 155 (876)
|.-|+....++..++|.||||||+.+|+++||.+.+.+++..++|+++++||||++.++ |..++.++.
T Consensus 65 HeAFt~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~~n----p~~v~~el~ 132 (509)
T COG0532 65 HEAFTAMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPEAN----PDKVKQELQ 132 (509)
T ss_pred HHHHHHHHhcCCccccEEEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCCCCC----HHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999654 555555443
No 75
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=1.6e-17 Score=185.67 Aligned_cols=126 Identities=28% Similarity=0.412 Sum_probs=107.5
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEc-CeEEEEEcCCCCc
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYK-DYAINLIDSPGHM 85 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~-~~~inlIDTPGh~ 85 (876)
.+.+.|.|+||+|||||||+++|-.. . +....+ .|||.+...+++.+. +..|+|+|||||.
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks--~--VAA~E~--------------GGITQhIGAF~V~~p~G~~iTFLDTPGHa 212 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKS--S--VAAGEA--------------GGITQHIGAFTVTLPSGKSITFLDTPGHA 212 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhC--c--eehhhc--------------CCccceeceEEEecCCCCEEEEecCCcHH
Confidence 36688999999999999999999765 2 222222 377877777766654 7899999999999
Q ss_pred cchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccccccccChHHHHHHH
Q 047363 86 DFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLISELKLTPLEAYNRL 154 (876)
Q Consensus 86 dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~~e~~~~~~~~~~~l 154 (876)
-|..+..++..++|.+||||.+.+|+++||.+.+.+++..++|+|+.+||+|+++++ |+.++..|
T Consensus 213 AF~aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp~a~----pekv~~eL 277 (683)
T KOG1145|consen 213 AFSAMRARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKPGAN----PEKVKREL 277 (683)
T ss_pred HHHHHHhccCccccEEEEEEEccCCccHhHHHHHHHHHhcCCCEEEEEeccCCCCCC----HHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999775 56655444
No 76
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.71 E-value=9.3e-16 Score=181.41 Aligned_cols=127 Identities=31% Similarity=0.371 Sum_probs=88.5
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCcee------eccChhhhhhcceeeeeeEEEEEEcCeEEEEEcC
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLR------FMDYLDEEQRRAITMKSSSIALHYKDYAINLIDS 81 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~------~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDT 81 (876)
|...|+|+||+|||||||+++|++. . +.....|.++ +.+....+..++...+ ...+.++...+.||||
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~--~--v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~--~~~v~~~~~~l~~iDT 76 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGS--A--VAKREAGGITQHIGATEIPMDVIEGICGDLLK--KFKIRLKIPGLLFIDT 76 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc--c--cccccCCceecccCeeEeeecccccccccccc--ccccccccCcEEEEEC
Confidence 4567999999999999999999865 2 1111112111 0000000000000000 0011111124899999
Q ss_pred CCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccc
Q 047363 82 PGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 82 PGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~ 140 (876)
|||.+|...+..+++.+|++|+|+|+.+|+..++...+..+...++|+++++||+|+..
T Consensus 77 pG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 77 PGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRIP 135 (590)
T ss_pred CCcHhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCccc
Confidence 99999999999999999999999999999999999988888888999999999999963
No 77
>cd04090 eEF2_II_snRNP Loc2 eEF2_C_snRNP, cd01514/C terminal domain:eEF2_C_snRNP: This family includes C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to domain II of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=99.71 E-value=5.4e-17 Score=147.75 Aligned_cols=94 Identities=34% Similarity=0.506 Sum_probs=81.2
Q ss_pred eEEEEEEeeeecccccCCCCCCccccccccCCCCCCCCccceEEEEEEEeCccCCCCEEEEeccccCCcchhhhccccce
Q 047363 398 CVAFVSKMFAVPIKMLPQRGSNGEILDNYADKGGNGESEECFLAFARIFSGVLYSGQRVFVLSALYDPLKVESMQKHIQE 477 (876)
Q Consensus 398 lv~~V~K~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iaf~RV~SGtL~~G~~v~vlg~~y~~~~~~~~~~~~~~ 477 (876)
+++||||+.++|+. ..+++|+|||||+|++||.|++++++++.+++++ ...
T Consensus 1 ~~a~VfK~~~~~~~-------------------------~~~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~----~~~ 51 (94)
T cd04090 1 LVVHVTKLYSTSDG-------------------------GSFWAFGRIYSGTIKKGQKVKVLGENYSLDDEED----MTI 51 (94)
T ss_pred CEEEEEeeeecCCC-------------------------CEEEEEEEEeeCeEcCCCEEEEECCCCCCccCCc----EEE
Confidence 57999999987752 1379999999999999999999998877654322 245
Q ss_pred eEEeEEEEecCCceeecceeeCCCeEEEecCCceeeccceecC
Q 047363 478 AELQSLYLMMGQGLKPVASAKAGNVVAIRGLGQQILKSATLSS 520 (876)
Q Consensus 478 ~~I~~L~l~~G~~~~~v~~v~AGnIv~I~GL~~~i~k~~Tl~s 520 (876)
++|++||.++|.+..++++|+|||||+|.|+++.+.+++||++
T Consensus 52 ~~i~~l~~~~g~~~~~v~~a~aGdIv~v~gl~~~~~~~~t~~~ 94 (94)
T cd04090 52 CTIGRLWILGGRYKIEVNEAPAGNWVLIKGIDSSIVKTATITS 94 (94)
T ss_pred EEEeEEEEecCCCEEEcceeCCCCEEEEECcchheeceEEecC
Confidence 7999999999999999999999999999999999999998864
No 78
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.70 E-value=7.1e-17 Score=170.16 Aligned_cols=125 Identities=23% Similarity=0.213 Sum_probs=103.2
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCc-eeeccChhhhhhcceeeeeeEEEE--------------------
Q 047363 11 NISILAHVDHGKTTLADHLIAATGGGLLHPKLAGK-LRFMDYLDEEQRRAITMKSSSIAL-------------------- 69 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~-~~~~d~~~~E~~rgiti~~~~i~~-------------------- 69 (876)
.|+++||.++|||||+.+|... .... ..|. ..+++...+|.+||+|...+...+
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~----~~~~-~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 75 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQG----ELDN-GRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESD 75 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhC----CcCC-CCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCcccccc
Confidence 3789999999999999999854 2222 1232 357889999999999864333222
Q ss_pred ----EEcCeEEEEEcCCCCccchHHHHHHHH--hcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccc
Q 047363 70 ----HYKDYAINLIDSPGHMDFCSEVSTAAR--LSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 70 ----~~~~~~inlIDTPGh~dF~~e~~~al~--~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~ 140 (876)
...++.++|+|||||.+|..++..++. .+|++++|||+.+|...++..++.++...++|+++|+||+|+..
T Consensus 76 ~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK~D~~~ 152 (224)
T cd04165 76 IEICEKSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKIDLAP 152 (224)
T ss_pred ceeeeeCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEECccccC
Confidence 233688999999999999999999986 79999999999999999999999999999999999999999864
No 79
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.67 E-value=3.9e-16 Score=154.46 Aligned_cols=115 Identities=33% Similarity=0.380 Sum_probs=93.1
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEc-CeEEEEEcCCCCccchH
Q 047363 11 NISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYK-DYAINLIDSPGHMDFCS 89 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~-~~~inlIDTPGh~dF~~ 89 (876)
+|+++|++|+|||||+++|+.. . .+....+..+++|+......+.+. ++.+++|||||+.+|..
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~--~-------------~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~ 66 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGI--E-------------TDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIK 66 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCc--c-------------cccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHH
Confidence 7999999999999999999753 1 112233455677777766666666 78999999999999998
Q ss_pred HHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcC-CcEEEEecccccc
Q 047363 90 EVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKL-TPCLVLNKIDRLI 140 (876)
Q Consensus 90 e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~i-p~ilviNKiD~~~ 140 (876)
.+..+++.+|++|+|+|+.++...++...+..+...+. |+++|+||+|+..
T Consensus 67 ~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~ 118 (164)
T cd04171 67 NMLAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVD 118 (164)
T ss_pred HHHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccC
Confidence 88999999999999999998877777776666655566 8999999999974
No 80
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=99.59 E-value=1e-13 Score=149.53 Aligned_cols=131 Identities=25% Similarity=0.342 Sum_probs=107.7
Q ss_pred CCCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCc-eeeccChhhhhhcceeeeeeEEEEEEc------------
Q 047363 6 TRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGK-LRFMDYLDEEQRRAITMKSSSIALHYK------------ 72 (876)
Q Consensus 6 ~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~-~~~~d~~~~E~~rgiti~~~~i~~~~~------------ 72 (876)
+..--+|+..||+|||||||+.+|+ +|..+.- .|. -.|.|..+.|.+||.|-..+..-+-|+
T Consensus 114 ~~~hv~Vg~aGhVdhGKSTlvG~Lv----tG~~DDG-~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld 188 (527)
T COG5258 114 APEHVLVGVAGHVDHGKSTLVGVLV----TGRLDDG-DGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLD 188 (527)
T ss_pred CCceEEEEEeccccCCcceEEEEEE----ecCCCCC-CcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCccc
Confidence 3445689999999999999999987 3333321 232 258899999999999876665555554
Q ss_pred -----------CeEEEEEcCCCCccchHHHHHHHH--hcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEeccccc
Q 047363 73 -----------DYAINLIDSPGHMDFCSEVSTAAR--LSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRL 139 (876)
Q Consensus 73 -----------~~~inlIDTPGh~dF~~e~~~al~--~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~ 139 (876)
+..+.|+||-||+.+..-+.+++- ..|..++||-|.+|++..|.+.+..+....+|+|++++|+|..
T Consensus 189 ~aE~~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~~lPviVvvTK~D~~ 268 (527)
T COG5258 189 EAEKAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALAMELPVIVVVTKIDMV 268 (527)
T ss_pred HHHHhHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhhhcCCEEEEEEecccC
Confidence 367999999999999988888884 4699999999999999999999999999999999999999997
Q ss_pred cc
Q 047363 140 IS 141 (876)
Q Consensus 140 ~~ 141 (876)
..
T Consensus 269 ~d 270 (527)
T COG5258 269 PD 270 (527)
T ss_pred cH
Confidence 54
No 81
>cd03690 Tet_II Tet_II: This subfamily represents domain II of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to domain II of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=99.58 E-value=7.3e-15 Score=131.21 Aligned_cols=83 Identities=19% Similarity=0.220 Sum_probs=72.4
Q ss_pred CCeEEEEEEeeeecccccCCCCCCccccccccCCCCCCCCccceEEEEEEEeCccCCCCEEEEeccccCCcchhhhcccc
Q 047363 396 APCVAFVSKMFAVPIKMLPQRGSNGEILDNYADKGGNGESEECFLAFARIFSGVLYSGQRVFVLSALYDPLKVESMQKHI 475 (876)
Q Consensus 396 ~plv~~V~K~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iaf~RV~SGtL~~G~~v~vlg~~y~~~~~~~~~~~~ 475 (876)
+|++++|||+.++++.. .++|+|||||+|++||.|++.+ .
T Consensus 2 ~p~~~~Vfkv~~d~~~G--------------------------~la~~RV~sG~l~~g~~v~~~~-------~------- 41 (85)
T cd03690 2 SELSGTVFKIERDDKGE--------------------------RLAYLRLYSGTLRLRDSVRVNR-------E------- 41 (85)
T ss_pred CCcEEEEEEeEECCCCC--------------------------eEEEEEEccCEEcCCCEEEeCC-------C-------
Confidence 68999999999987631 5999999999999999997643 1
Q ss_pred ceeEEeEEEEecCCceeecceeeCCCeEEEecCCceeeccceec
Q 047363 476 QEAELQSLYLMMGQGLKPVASAKAGNVVAIRGLGQQILKSATLS 519 (876)
Q Consensus 476 ~~~~I~~L~l~~G~~~~~v~~v~AGnIv~I~GL~~~i~k~~Tl~ 519 (876)
..++|++||.++|.+..++++|+|||||+|.|+++ +..|+||+
T Consensus 42 ~~~~v~~l~~~~g~~~~~v~~~~aGdI~ai~gl~~-~~~Gdtl~ 84 (85)
T cd03690 42 EKIKITELRVFNNGEVVTADTVTAGDIAILTGLKG-LRVGDVLG 84 (85)
T ss_pred cEEEeceeEEEeCCCeEECcEECCCCEEEEECCCC-CcCccccC
Confidence 23789999999999999999999999999999988 46788885
No 82
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.57 E-value=2.3e-14 Score=142.61 Aligned_cols=113 Identities=30% Similarity=0.398 Sum_probs=89.6
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEc---CeEEEEEcCCCCcc
Q 047363 10 RNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYK---DYAINLIDSPGHMD 86 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~---~~~inlIDTPGh~d 86 (876)
+.|+|+|+.|+|||||+++|... .-.. ...+++|.......+.+. ++.+++|||||+.+
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~--~~~~----------------~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~ 62 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKT--NVAA----------------GEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEA 62 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhc--cccc----------------ccCCCeEEeeccEEEecccCCcceEEEEeCCCcHH
Confidence 36999999999999999999865 2100 011234444433444443 68999999999999
Q ss_pred chHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccc
Q 047363 87 FCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 87 F~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~ 140 (876)
|......+++.+|++++|+|+.++...++...+..+...++|+++|+||+|+..
T Consensus 63 ~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~ 116 (168)
T cd01887 63 FTNMRARGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPN 116 (168)
T ss_pred HHHHHHHHHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEEceeccc
Confidence 988888899999999999999998877777778888888999999999999874
No 83
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.57 E-value=5.2e-14 Score=162.90 Aligned_cols=115 Identities=21% Similarity=0.237 Sum_probs=94.7
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccc
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDF 87 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF 87 (876)
...+|+|+|++|+|||||+++|++. ...+.. ...|.|..+....+.+.+..++++||||+.+.
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~--~~~~~~---------------~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~ 234 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGE--ERVIVS---------------DIAGTTRDSIDTPFERDGQKYTLIDTAGIRRK 234 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCC--Cceeec---------------CCCCceEEEEEEEEEECCeeEEEEECCCCCCC
Confidence 4578999999999999999999876 322211 13467777766777788899999999997542
Q ss_pred h-----------HHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEeccccc
Q 047363 88 C-----------SEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRL 139 (876)
Q Consensus 88 ~-----------~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~ 139 (876)
. ..+..+++.+|++|+|+|+.+|.+.+...+++++.+.++|+++|+||+|+.
T Consensus 235 ~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~ivv~NK~Dl~ 297 (435)
T PRK00093 235 GKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDLV 297 (435)
T ss_pred cchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEEEEEECccCC
Confidence 1 234568899999999999999999999999999999999999999999987
No 84
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.56 E-value=3.4e-14 Score=164.11 Aligned_cols=115 Identities=23% Similarity=0.226 Sum_probs=93.6
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccc
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDF 87 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF 87 (876)
...+|+++|++|+|||||+++|++. ...+.. ...|+|..+....+.+.+..+.+|||||+.++
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~--~~~~~~---------------~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~ 233 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGE--ERVIVS---------------DIAGTTRDSIDIPFERNGKKYLLIDTAGIRRK 233 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCC--CeeecC---------------CCCCceECcEeEEEEECCcEEEEEECCCcccc
Confidence 4568999999999999999999876 322211 12356666666677778889999999998654
Q ss_pred h-----------HHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEeccccc
Q 047363 88 C-----------SEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRL 139 (876)
Q Consensus 88 ~-----------~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~ 139 (876)
. ..+..+++.+|++|+|+|+.++.+.+...+++.+.+.++|+++|+||+|+.
T Consensus 234 ~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~ 296 (429)
T TIGR03594 234 GKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLRIAGLILEAGKALVIVVNKWDLV 296 (429)
T ss_pred ccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEECcccC
Confidence 2 123568899999999999999999999999999999999999999999997
No 85
>cd04092 mtEFG2_II_like mtEFG2_C: C-terminus of mitochondrial Elongation factor G2 (mtEFG2)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. No clear phenotype has been found for mutants in the yeast homologue of mtEFG2, MEF2. There are two forms of mtEFG present in mammals (designated mtEFG1s and mtEFG2s) mtEFG1s are n
Probab=99.56 E-value=1.5e-14 Score=128.57 Aligned_cols=83 Identities=25% Similarity=0.372 Sum_probs=71.5
Q ss_pred eEEEEEEeeeecccccCCCCCCccccccccCCCCCCCCccceEEEEEEEeCccCCCCEEEEeccccCCcchhhhccccce
Q 047363 398 CVAFVSKMFAVPIKMLPQRGSNGEILDNYADKGGNGESEECFLAFARIFSGVLYSGQRVFVLSALYDPLKVESMQKHIQE 477 (876)
Q Consensus 398 lv~~V~K~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iaf~RV~SGtL~~G~~v~vlg~~y~~~~~~~~~~~~~~ 477 (876)
+++||||+.++++. .+++|+|||||+|++||.|++.+.. .+
T Consensus 1 ~~a~VfK~~~d~~~--------------------------g~i~~~Ri~sGtl~~g~~v~~~~~~-------------~~ 41 (83)
T cd04092 1 LCALAFKVVHDPQR--------------------------GPLTFVRVYSGTLKRGSALYNTNTG-------------KK 41 (83)
T ss_pred CEEEEEecccCCCC--------------------------CeEEEEEEecCEECCCCEEEECCCC-------------CE
Confidence 57999999988762 1599999999999999999876421 24
Q ss_pred eEEeEEEEecCCceeecceeeCCCeEEEecCCceeeccceecC
Q 047363 478 AELQSLYLMMGQGLKPVASAKAGNVVAIRGLGQQILKSATLSS 520 (876)
Q Consensus 478 ~~I~~L~l~~G~~~~~v~~v~AGnIv~I~GL~~~i~k~~Tl~s 520 (876)
++|++||.++|.+..++++++||||++|.|+++ +..|+||++
T Consensus 42 ~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~-~~~Gdtl~~ 83 (83)
T cd04092 42 ERISRLLQPFADQYQEIPSLSAGNIGVITGLKQ-TRTGDTLVT 83 (83)
T ss_pred EEeeEEEEEECCCceECCeeCCCCEEEEECCCC-cccCCEEeC
Confidence 789999999999999999999999999999988 567899863
No 86
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=2.6e-14 Score=151.98 Aligned_cols=139 Identities=26% Similarity=0.340 Sum_probs=110.7
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEc---------CeEEEEEc
Q 047363 10 RNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYK---------DYAINLID 80 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~---------~~~inlID 80 (876)
-|++|+||+|+|||||+.+|... +.....|..+...+||+|.+...-.+... ...+.++|
T Consensus 8 ~N~GiLGHvDSGKTtLarals~~-----------~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvD 76 (522)
T KOG0461|consen 8 LNLGILGHVDSGKTTLARALSEL-----------GSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVD 76 (522)
T ss_pred eeeeeEeeccCchHHHHHHHHhh-----------ccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEe
Confidence 79999999999999999999765 23345677888889999988766555433 35679999
Q ss_pred CCCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccccccc-cChHHHHHHHHHHHH
Q 047363 81 SPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLISELK-LTPLEAYNRLLRIVH 159 (876)
Q Consensus 81 TPGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~~e~~-~~~~~~~~~l~~~l~ 159 (876)
||||..+...+..+....|.+++|||+..|.+.||.+.+-.........|+|+||+|.+-.+-+ ...++...++++.++
T Consensus 77 CPGHasLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe 156 (522)
T KOG0461|consen 77 CPGHASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLCKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLE 156 (522)
T ss_pred CCCcHHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhccceEEEEeccccccchhhhhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998877777777789999999999854422 223344444444444
No 87
>cd03700 eEF2_snRNP_like_II EF2_snRNP_like_II: this subfamily represents domain II of elongation factor (EF) EF-2 found eukaryotes and archaea and, the C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. This translocation step is catalyzed by EF-2_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p.
Probab=99.53 E-value=3.8e-14 Score=128.83 Aligned_cols=84 Identities=44% Similarity=0.711 Sum_probs=70.8
Q ss_pred eEEEEEEeeeecccccCCCCCCccccccccCCCCCCCCccceEEEEEEEeCccCCCCEEEEeccccCCcchhhhccccce
Q 047363 398 CVAFVSKMFAVPIKMLPQRGSNGEILDNYADKGGNGESEECFLAFARIFSGVLYSGQRVFVLSALYDPLKVESMQKHIQE 477 (876)
Q Consensus 398 lv~~V~K~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iaf~RV~SGtL~~G~~v~vlg~~y~~~~~~~~~~~~~~ 477 (876)
+++||||+.+++. ...++||+|||||+|++||.|++.++.+++++.+ ...+
T Consensus 1 ~v~~v~Ki~~~~~-------------------------~~g~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~----~~~~ 51 (93)
T cd03700 1 LVMYVTKMVPTPD-------------------------KGGFIAFGRVFSGTIRKGQKVRVLGPNYSPEDEE----DLSK 51 (93)
T ss_pred CeEEEEeCeECCC-------------------------CCEEEEEEEEeeCeEeCCCEEEEECCCCCCCccC----cEEE
Confidence 4789999987762 1237999999999999999999998877653322 2345
Q ss_pred eEEeEEEEecCCceeecceeeCCCeEEEecCCc
Q 047363 478 AELQSLYLMMGQGLKPVASAKAGNVVAIRGLGQ 510 (876)
Q Consensus 478 ~~I~~L~l~~G~~~~~v~~v~AGnIv~I~GL~~ 510 (876)
++|++||+++|++..++++|+|||||+|.|+++
T Consensus 52 ~~v~~l~~~~g~~~~~v~~a~aGdIv~i~g~~~ 84 (93)
T cd03700 52 KTIQRLYLMMGRYREPVDEVPAGNIVLIVGLDQ 84 (93)
T ss_pred EEEeEEEEEcCCCEEEccccCCCCEEEEECCcc
Confidence 789999999999999999999999999999977
No 88
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.52 E-value=1.8e-13 Score=153.02 Aligned_cols=117 Identities=21% Similarity=0.253 Sum_probs=101.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCcc-
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMD- 86 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~d- 86 (876)
....|||+|.+|+|||||+|+|++. ...|.... -|+|..+-.+.+.+++..+.+|||+|...
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilge--eR~Iv~~~---------------aGTTRD~I~~~~e~~~~~~~liDTAGiRrk 239 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGE--ERVIVSDI---------------AGTTRDSIDIEFERDGRKYVLIDTAGIRRK 239 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccC--ceEEecCC---------------CCccccceeeeEEECCeEEEEEECCCCCcc
Confidence 4578999999999999999999988 54444332 36677777788999999999999999543
Q ss_pred ---------c-hHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEeccccccc
Q 047363 87 ---------F-CSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLIS 141 (876)
Q Consensus 87 ---------F-~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~~ 141 (876)
| ...+..|+..||.+++|+|+.+|++.|...+...+.+.+.+.|+|+||+|+...
T Consensus 240 ~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vIvvNKWDl~~~ 304 (444)
T COG1160 240 GKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVIVVNKWDLVEE 304 (444)
T ss_pred cccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcCCCeEEEEEccccCCc
Confidence 3 346889999999999999999999999999999999999999999999999864
No 89
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.50 E-value=7.7e-14 Score=136.78 Aligned_cols=112 Identities=21% Similarity=0.226 Sum_probs=86.1
Q ss_pred EEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccchH---
Q 047363 13 SILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFCS--- 89 (876)
Q Consensus 13 ~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~~--- 89 (876)
+++|++|+|||||+++|+.. .... ... ..++|.........+.++.+++|||||+.++..
T Consensus 1 ~l~G~~~~GKssl~~~l~~~--~~~~----------~~~-----~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~ 63 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGR--RDAI----------VED-----TPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGIS 63 (157)
T ss_pred CccCCCCCCHHHHHHHHhCC--cEEe----------ecC-----CCCceeCceeEEEEECCeEEEEEECCCCCCchhHHH
Confidence 57999999999999999865 2111 110 123344444455667789999999999998644
Q ss_pred -----HHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEeccccccc
Q 047363 90 -----EVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLIS 141 (876)
Q Consensus 90 -----e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~~ 141 (876)
+...+++.+|++++|+|+.++.......+++++.+.++|+++|+||+|+...
T Consensus 64 ~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~ 120 (157)
T cd01894 64 KEIREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKE 120 (157)
T ss_pred HHHHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCCh
Confidence 5567889999999999999887777777778888888999999999999754
No 90
>cd04088 EFG_mtEFG_II EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more compl
Probab=99.49 E-value=1.1e-13 Score=122.86 Aligned_cols=82 Identities=29% Similarity=0.418 Sum_probs=70.7
Q ss_pred eEEEEEEeeeecccccCCCCCCccccccccCCCCCCCCccceEEEEEEEeCccCCCCEEEEeccccCCcchhhhccccce
Q 047363 398 CVAFVSKMFAVPIKMLPQRGSNGEILDNYADKGGNGESEECFLAFARIFSGVLYSGQRVFVLSALYDPLKVESMQKHIQE 477 (876)
Q Consensus 398 lv~~V~K~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iaf~RV~SGtL~~G~~v~vlg~~y~~~~~~~~~~~~~~ 477 (876)
++|+|||+.++++. ..++|+|||||+|++||.|++++. ...
T Consensus 1 ~~a~Vfk~~~d~~~--------------------------G~~~~~Rv~sG~l~~g~~v~~~~~-------------~~~ 41 (83)
T cd04088 1 FVALVFKTIHDPFV--------------------------GKLSFVRVYSGTLKAGSTLYNSTK-------------GKK 41 (83)
T ss_pred CEEEEEEcccCCCC--------------------------ceEEEEEEecCEEcCCCEEEECCC-------------CcE
Confidence 47999999987752 149999999999999999988752 134
Q ss_pred eEEeEEEEecCCceeecceeeCCCeEEEecCCceeeccceec
Q 047363 478 AELQSLYLMMGQGLKPVASAKAGNVVAIRGLGQQILKSATLS 519 (876)
Q Consensus 478 ~~I~~L~l~~G~~~~~v~~v~AGnIv~I~GL~~~i~k~~Tl~ 519 (876)
.+|++|+.++|.+..++++++||||++|.|+++ +..|+||+
T Consensus 42 ~~v~~l~~~~g~~~~~v~~~~aGdI~~i~g~~~-~~~Gdtl~ 82 (83)
T cd04088 42 ERVGRLLRMHGKKQEEVEEAGAGDIGAVAGLKD-TATGDTLC 82 (83)
T ss_pred EEeeEEEEEcCCCceECCEeCCCCEEEEECCCC-CccCCEee
Confidence 789999999999999999999999999999988 56788885
No 91
>COG1159 Era GTPase [General function prediction only]
Probab=99.48 E-value=1e-13 Score=147.62 Aligned_cols=118 Identities=25% Similarity=0.275 Sum_probs=92.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCcc-
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMD- 86 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~d- 86 (876)
+.--|||+|.+|+|||||+|+|++. .-.| +...+++.+..+. .-+..+++.+.|+||||...
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~--KisI----------vS~k~QTTR~~I~-----GI~t~~~~QiIfvDTPGih~p 67 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQ--KISI----------VSPKPQTTRNRIR-----GIVTTDNAQIIFVDTPGIHKP 67 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcC--ceEe----------ecCCcchhhhhee-----EEEEcCCceEEEEeCCCCCCc
Confidence 4567999999999999999999987 3333 2333333333222 22334589999999999543
Q ss_pred -------chHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccccc
Q 047363 87 -------FCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLISE 142 (876)
Q Consensus 87 -------F~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~~e 142 (876)
....+..++..+|.+++|||+.++.....+.++..+...+.|+++++||+|+...+
T Consensus 68 k~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~~ 130 (298)
T COG1159 68 KHALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKPK 130 (298)
T ss_pred chHHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCCcH
Confidence 25678889999999999999999999999999998888778999999999998654
No 92
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.48 E-value=1.1e-13 Score=137.92 Aligned_cols=116 Identities=16% Similarity=0.142 Sum_probs=81.7
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccchHH
Q 047363 11 NISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFCSE 90 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~~e 90 (876)
||+++|+.|+|||||+++|... .+... +. . .. ....|+......+.+.+..+++|||||+.+|...
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~--~~~~~----~~----~--~~--~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 66 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTL--FSKYK----GL----P--PS--KITPTVGLNIGTIEVGNARLKFWDLGGQESLRSL 66 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhh--ccccc----CC----c--cc--ccCCccccceEEEEECCEEEEEEECCCChhhHHH
Confidence 6899999999999999999875 22100 00 0 00 1122333333456677899999999999999999
Q ss_pred HHHHHHhcCeEEEEEcCCCccccc-hHHHHHHh----hhhcCCcEEEEecccccc
Q 047363 91 VSTAARLSDGALVLVDAVEGVHIQ-THAVLRQS----WIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 91 ~~~al~~aDgaIlVvDa~egv~~~-t~~~l~~~----~~~~ip~ilviNKiD~~~ 140 (876)
....++.+|++|+|+|+.+..... ....+... ...++|+++++||+|+..
T Consensus 67 ~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~ 121 (167)
T cd04160 67 WDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPD 121 (167)
T ss_pred HHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEcccccc
Confidence 999999999999999998643221 12222222 235799999999999865
No 93
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.48 E-value=2.8e-13 Score=134.59 Aligned_cols=116 Identities=22% Similarity=0.264 Sum_probs=87.1
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccch
Q 047363 9 IRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFC 88 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~ 88 (876)
..+|+++|++|+|||||+++|++. ...+.. ..++.+.......+...+..+++|||||+.++.
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~--~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~ 64 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGE--ERVIVS---------------DIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKG 64 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCc--cceecc---------------CCCCCccCceeeEEEECCeeEEEEECCCCcccc
Confidence 468999999999999999999865 221111 012333333334555667889999999986541
Q ss_pred -----------HHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEeccccccc
Q 047363 89 -----------SEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLIS 141 (876)
Q Consensus 89 -----------~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~~ 141 (876)
.....+++.+|++|+|+|+..+...+...+++.+...+.|+++++||+|+...
T Consensus 65 ~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~ 128 (174)
T cd01895 65 KVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEK 128 (174)
T ss_pred chhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCCc
Confidence 22345678999999999999988877777888887788999999999999754
No 94
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.48 E-value=1.8e-12 Score=160.43 Aligned_cols=100 Identities=27% Similarity=0.305 Sum_probs=83.8
Q ss_pred HHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcC------------------eEEEEEcCCC
Q 047363 22 KTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKD------------------YAINLIDSPG 83 (876)
Q Consensus 22 KTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~------------------~~inlIDTPG 83 (876)
||||+++|.+. + +. ....+|||.+..+..+.+.. ..++||||||
T Consensus 474 KTtLLD~iR~t--~--v~--------------~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPG 535 (1049)
T PRK14845 474 NTTLLDKIRKT--R--VA--------------KKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPG 535 (1049)
T ss_pred cccHHHHHhCC--C--cc--------------cccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCC
Confidence 99999999655 2 11 12246888887777766542 1289999999
Q ss_pred CccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEeccccc
Q 047363 84 HMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRL 139 (876)
Q Consensus 84 h~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~ 139 (876)
|.+|......+++.+|++++|+|+.+|++.++...+..+...++|+++|+||+|+.
T Consensus 536 he~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~~iPiIVViNKiDL~ 591 (1049)
T PRK14845 536 HEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQYKTPFVVAANKIDLI 591 (1049)
T ss_pred cHHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHHcCCCEEEEEECCCCc
Confidence 99999888889999999999999999999999999999988899999999999986
No 95
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.46 E-value=7.6e-13 Score=154.61 Aligned_cols=117 Identities=19% Similarity=0.240 Sum_probs=90.1
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCc-
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHM- 85 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~- 85 (876)
...++|+|+|++|+|||||+++|++. ...+.. ...|+|.......+.+.+..+.||||||..
T Consensus 209 ~~~~kI~iiG~~nvGKSSLin~l~~~--~~~~~s---------------~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~ 271 (472)
T PRK03003 209 GGPRRVALVGKPNVGKSSLLNKLAGE--ERSVVD---------------DVAGTTVDPVDSLIELGGKTWRFVDTAGLRR 271 (472)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCC--Cccccc---------------CCCCccCCcceEEEEECCEEEEEEECCCccc
Confidence 35689999999999999999999866 221111 123445444445566778899999999963
Q ss_pred --------cchHH--HHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccc
Q 047363 86 --------DFCSE--VSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 86 --------dF~~e--~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~ 140 (876)
+|... ...+++.+|++|+|+|+.++.+.+...++..+...++|+|+|+||+|+..
T Consensus 272 ~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~piIiV~NK~Dl~~ 336 (472)
T PRK03003 272 RVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEAGRALVLAFNKWDLVD 336 (472)
T ss_pred cccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCC
Confidence 22222 23567899999999999999998888888888888999999999999974
No 96
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.46 E-value=3.3e-13 Score=133.83 Aligned_cols=138 Identities=20% Similarity=0.212 Sum_probs=106.3
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcC-eEEEEEcCCCCccc
Q 047363 9 IRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKD-YAINLIDSPGHMDF 87 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~-~~inlIDTPGh~dF 87 (876)
--.|+|+|+.++||||++.++... ...+....... +.... .|..|+.....++.+.+ +.++|+|||||.+|
T Consensus 10 ~~KIvv~G~~~agKtTfv~~~s~k--~~v~t~~~~~~----~s~k~--kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF 81 (187)
T COG2229 10 ETKIVVIGPVGAGKTTFVRALSDK--PLVITEADASS----VSGKG--KRPTTVAMDFGSIELDEDTGVHLFGTPGQERF 81 (187)
T ss_pred ceeEEEEcccccchhhHHHHhhcc--ccceeeccccc----ccccc--ccceeEeecccceEEcCcceEEEecCCCcHHH
Confidence 467999999999999999999887 43322111000 00000 34567666666676665 99999999999999
Q ss_pred hHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhc-CCcEEEEecccccccccccChHHHHHHHHHH
Q 047363 88 CSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEK-LTPCLVLNKIDRLISELKLTPLEAYNRLLRI 157 (876)
Q Consensus 88 ~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~-ip~ilviNKiD~~~~e~~~~~~~~~~~l~~~ 157 (876)
...+...++.++|+|++||++.+.....+.+++.....+ +|+++++||.|+..+ .+|+++.+-+..-
T Consensus 82 ~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a---~ppe~i~e~l~~~ 149 (187)
T COG2229 82 KFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFDA---LPPEKIREALKLE 149 (187)
T ss_pred HHHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccCCC---CCHHHHHHHHHhc
Confidence 999999999999999999999988877778888887777 999999999999985 4677776666544
No 97
>cd04091 mtEFG1_II_like mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals
Probab=99.46 E-value=3.5e-13 Score=119.31 Aligned_cols=80 Identities=23% Similarity=0.366 Sum_probs=68.9
Q ss_pred eEEEEEEeeeecccccCCCCCCccccccccCCCCCCCCccceEEEEEEEeCccCCCCEEEEeccccCCcchhhhccccce
Q 047363 398 CVAFVSKMFAVPIKMLPQRGSNGEILDNYADKGGNGESEECFLAFARIFSGVLYSGQRVFVLSALYDPLKVESMQKHIQE 477 (876)
Q Consensus 398 lv~~V~K~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iaf~RV~SGtL~~G~~v~vlg~~y~~~~~~~~~~~~~~ 477 (876)
++++|||+.+++++ .++|+|||||+|++||.|++... + .+
T Consensus 1 ~~a~vfK~~~~~~G---------------------------~i~~~Rv~sG~lk~gd~v~~~~~------~-------~~ 40 (81)
T cd04091 1 FVGLAFKLEEGRFG---------------------------QLTYMRIYQGKLKKGDTIYNVRT------G-------KK 40 (81)
T ss_pred CeEEEEEeecCCCC---------------------------CEEEEEEecCEEcCCCEEEEcCC------C-------CE
Confidence 47999999987653 49999999999999999987531 1 24
Q ss_pred eEEeEEEEecCCceeecceeeCCCeEEEecCCceeeccceec
Q 047363 478 AELQSLYLMMGQGLKPVASAKAGNVVAIRGLGQQILKSATLS 519 (876)
Q Consensus 478 ~~I~~L~l~~G~~~~~v~~v~AGnIv~I~GL~~~i~k~~Tl~ 519 (876)
++|.+|+.++|.+..+++++.||||+++.|++ +..|+||+
T Consensus 41 ~~v~~i~~~~g~~~~~~~~~~aGdI~~i~g~~--~~~Gdtl~ 80 (81)
T cd04091 41 VRVPRLVRMHSNEMEEVEEAGAGDICAIFGID--CASGDTFT 80 (81)
T ss_pred EEEeEEEEEeCCCceEccEECCCCEEEEECCC--cccCCEec
Confidence 78999999999999999999999999999996 56789985
No 98
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=99.45 E-value=2.9e-13 Score=147.23 Aligned_cols=138 Identities=20% Similarity=0.292 Sum_probs=116.1
Q ss_pred CCCCceEEEEEeCCCCcHHHHHHHHHHhhCCCCccccc----------CC-----ceeeccChhhhhhcceeeeeeEEEE
Q 047363 5 DTRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKL----------AG-----KLRFMDYLDEEQRRAITMKSSSIAL 69 (876)
Q Consensus 5 ~~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~----------~g-----~~~~~d~~~~E~~rgiti~~~~i~~ 69 (876)
++....|+.++||+++||||+-..++.. .|.++.+. .+ -.+++|+..+|+++|-|+......+
T Consensus 75 ~pk~hvn~vfighVdagkstigg~il~l--tg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~F 152 (501)
T KOG0459|consen 75 YPKEHVNAVFIGHVDAGKSTIGGNILFL--TGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYF 152 (501)
T ss_pred CCCCCceEEEEEEEeccccccCCeeEEE--EeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEE
Confidence 4566789999999999999999999888 66665432 11 1367999999999999999999999
Q ss_pred EEcCeEEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCcc-------ccchHHHHHHhhhhcCCc-EEEEeccccccc
Q 047363 70 HYKDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGV-------HIQTHAVLRQSWIEKLTP-CLVLNKIDRLIS 141 (876)
Q Consensus 70 ~~~~~~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv-------~~~t~~~l~~~~~~~ip~-ilviNKiD~~~~ 141 (876)
.....+++++|+|||-.|..++..++..||.+++|+++..|- -.||+.....+...++.. |+++||||-+..
T Consensus 153 Ete~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtv 232 (501)
T KOG0459|consen 153 ETENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTV 232 (501)
T ss_pred EecceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCcc
Confidence 999999999999999999999999999999999999997653 347887777777777765 567899999987
Q ss_pred ccc
Q 047363 142 ELK 144 (876)
Q Consensus 142 e~~ 144 (876)
++.
T Consensus 233 nWs 235 (501)
T KOG0459|consen 233 NWS 235 (501)
T ss_pred Ccc
Confidence 653
No 99
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.45 E-value=2.8e-13 Score=151.52 Aligned_cols=114 Identities=24% Similarity=0.215 Sum_probs=97.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccc--
Q 047363 10 RNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDF-- 87 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF-- 87 (876)
+.|+|+|.+|+|||||.|+|++. .-.|... ..|+|.+.......|.++.+.+|||+|..+.
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~--r~AIV~D---------------~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~ 66 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGR--RIAIVSD---------------TPGVTRDRIYGDAEWLGREFILIDTGGLDDGDE 66 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCC--eeeEeec---------------CCCCccCCccceeEEcCceEEEEECCCCCcCCc
Confidence 67999999999999999999877 3333221 2366777777788899999999999998853
Q ss_pred -------hHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccc
Q 047363 88 -------CSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 88 -------~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~ 140 (876)
...+..|+..||.+|+|||+.+|+++..+.+.+.+++.++|+|||+||+|...
T Consensus 67 ~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~ 126 (444)
T COG1160 67 DELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNLK 126 (444)
T ss_pred hHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCch
Confidence 34588899999999999999999999999999999988899999999999874
No 100
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.45 E-value=5.3e-13 Score=133.08 Aligned_cols=116 Identities=14% Similarity=0.198 Sum_probs=82.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcC--eEEEEEcCCCCc
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKD--YAINLIDSPGHM 85 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~--~~inlIDTPGh~ 85 (876)
..++|+++|+.|+|||||+++|+.. . .... .....+..... ..+.+.+ ..++|+||||+.
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~--~--~~~~------------~~~t~~~~~~~--~~~~~~~~~~~l~i~D~~G~~ 63 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSG--T--FSER------------QGNTIGVDFTM--KTLEIEGKRVKLQIWDTAGQE 63 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhC--C--Cccc------------CCCccceEEEE--EEEEECCEEEEEEEEECCChH
Confidence 4689999999999999999999754 1 1100 00112222222 2333443 678999999999
Q ss_pred cchHHHHHHHHhcCeEEEEEcCCCccccchHHHH-HHhh---hhcCCcEEEEeccccccc
Q 047363 86 DFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVL-RQSW---IEKLTPCLVLNKIDRLIS 141 (876)
Q Consensus 86 dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l-~~~~---~~~ip~ilviNKiD~~~~ 141 (876)
+|.......++.+|++|+|+|+.+..+.+....| .... ..++|+++|+||+|+...
T Consensus 64 ~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~ 123 (165)
T cd01864 64 RFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQ 123 (165)
T ss_pred HHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccc
Confidence 9999899999999999999999887655443333 2222 246899999999998743
No 101
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.44 E-value=2e-12 Score=134.41 Aligned_cols=129 Identities=18% Similarity=0.232 Sum_probs=87.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEE----EcCeEEEEEcCCCCc
Q 047363 10 RNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALH----YKDYAINLIDSPGHM 85 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~----~~~~~inlIDTPGh~ 85 (876)
++|+++|+.|+|||||+.+|....+.... + ++......+. ..+..+.+||||||.
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~~~t~----------~-----------s~~~~~~~~~~~~~~~~~~~~l~D~pG~~ 59 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKYRSTV----------T-----------SIEPNVATFILNSEGKGKKFRLVDVPGHP 59 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCCCcc----------C-----------cEeecceEEEeecCCCCceEEEEECCCCH
Confidence 57999999999999999999765111110 0 0011111111 236789999999999
Q ss_pred cchHHHHHHHHhc-CeEEEEEcCCCccc--cchHHHH----HHhh--hhcCCcEEEEecccccccccccChHHHHHHHHH
Q 047363 86 DFCSEVSTAARLS-DGALVLVDAVEGVH--IQTHAVL----RQSW--IEKLTPCLVLNKIDRLISELKLTPLEAYNRLLR 156 (876)
Q Consensus 86 dF~~e~~~al~~a-DgaIlVvDa~egv~--~~t~~~l----~~~~--~~~ip~ilviNKiD~~~~e~~~~~~~~~~~l~~ 156 (876)
+|.......++.+ +++|+|+|+..... ..+...| .... ..++|+++|+||+|+..+. +++.+...+++
T Consensus 60 ~~~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~---~~~~i~~~le~ 136 (203)
T cd04105 60 KLRDKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAK---PAKKIKEQLEK 136 (203)
T ss_pred HHHHHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccC---CHHHHHHHHHH
Confidence 9999999999999 99999999987531 1112222 2111 2479999999999998643 45566666666
Q ss_pred HHHHhh
Q 047363 157 IVHEVN 162 (876)
Q Consensus 157 ~l~~vn 162 (876)
-++.+.
T Consensus 137 ei~~~~ 142 (203)
T cd04105 137 ELNTLR 142 (203)
T ss_pred HHHHHH
Confidence 555444
No 102
>cd03691 BipA_TypA_II BipA_TypA_II: domain II of BipA (also called TypA) having homology to domain II of the elongation factors (EFs) EF-G and EF-Tu. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secretion.
Probab=99.43 E-value=7e-13 Score=118.62 Aligned_cols=85 Identities=28% Similarity=0.348 Sum_probs=71.2
Q ss_pred eEEEEEEeeeecccccCCCCCCccccccccCCCCCCCCccceEEEEEEEeCccCCCCEEEEeccccCCcchhhhccccce
Q 047363 398 CVAFVSKMFAVPIKMLPQRGSNGEILDNYADKGGNGESEECFLAFARIFSGVLYSGQRVFVLSALYDPLKVESMQKHIQE 477 (876)
Q Consensus 398 lv~~V~K~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iaf~RV~SGtL~~G~~v~vlg~~y~~~~~~~~~~~~~~ 477 (876)
+.++|||+..+++. ..++|+|||||+|++||+|++.+++- ...+
T Consensus 1 ~~~~vfk~~~d~~~--------------------------g~i~~~Rv~sG~l~~g~~v~~~~~~~----------~~~~ 44 (86)
T cd03691 1 LQMLVTTLDYDDYV--------------------------GRIAIGRIFRGTVKVGQQVAVVKRDG----------KIEK 44 (86)
T ss_pred CeEEEEEeEecCCC--------------------------CeEEEEEEEeCEEcCCCEEEEEcCCC----------CEEE
Confidence 36899999988763 15999999999999999999876430 1134
Q ss_pred eEEeEEEEecCCceeecceeeCCCeEEEecCCceeeccceec
Q 047363 478 AELQSLYLMMGQGLKPVASAKAGNVVAIRGLGQQILKSATLS 519 (876)
Q Consensus 478 ~~I~~L~l~~G~~~~~v~~v~AGnIv~I~GL~~~i~k~~Tl~ 519 (876)
.+|++|+.++|++..++++++||||+++.|+++ +..|+||+
T Consensus 45 ~~v~~l~~~~g~~~~~v~~~~aG~I~~i~gl~~-~~~Gdtl~ 85 (86)
T cd03691 45 AKITKLFGFEGLKRVEVEEAEAGDIVAIAGIED-ITIGDTIC 85 (86)
T ss_pred EEEeeEeeeeCCCeeECcEECCCCEEEEECCCC-Ccccceec
Confidence 689999999999999999999999999999987 45788885
No 103
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.42 E-value=9.9e-13 Score=130.27 Aligned_cols=111 Identities=23% Similarity=0.252 Sum_probs=82.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccch--
Q 047363 11 NISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFC-- 88 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~-- 88 (876)
+|+++|.+|+|||||+|+|++. ...+ .. ..|.|+......+.+.+..+.|+||||..++.
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~--~~~v----------~n------~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~ 63 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGA--KQKV----------GN------WPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSK 63 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT--SEEE----------EE------STTSSSEEEEEEEEETTEEEEEEE----SSSSSS
T ss_pred EEEEECCCCCCHHHHHHHHHCC--Ccee----------cC------CCCCCeeeeeEEEEecCceEEEEECCCcccCCCC
Confidence 6999999999999999999876 3111 11 24778888888888899999999999976652
Q ss_pred --HH--HHHHH--HhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEeccccccc
Q 047363 89 --SE--VSTAA--RLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLIS 141 (876)
Q Consensus 89 --~e--~~~al--~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~~ 141 (876)
.| +..++ ...|++|+|+|+.. ..+...+..++.+.++|+++++||+|....
T Consensus 64 s~ee~v~~~~l~~~~~D~ii~VvDa~~--l~r~l~l~~ql~e~g~P~vvvlN~~D~a~~ 120 (156)
T PF02421_consen 64 SEEERVARDYLLSEKPDLIIVVVDATN--LERNLYLTLQLLELGIPVVVVLNKMDEAER 120 (156)
T ss_dssp SHHHHHHHHHHHHTSSSEEEEEEEGGG--HHHHHHHHHHHHHTTSSEEEEEETHHHHHH
T ss_pred CcHHHHHHHHHhhcCCCEEEEECCCCC--HHHHHHHHHHHHHcCCCEEEEEeCHHHHHH
Confidence 11 23333 46899999999975 234456778888999999999999999753
No 104
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.42 E-value=6.7e-13 Score=134.87 Aligned_cols=117 Identities=16% Similarity=0.141 Sum_probs=82.8
Q ss_pred CCCCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCC
Q 047363 5 DTRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGH 84 (876)
Q Consensus 5 ~~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh 84 (876)
...+..+|+|+|++|+|||||+++|++..+.+.++. ..|.|..... +.+. ..+.+|||||+
T Consensus 14 ~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~----------------~~~~t~~~~~--~~~~-~~~~liDtpG~ 74 (179)
T TIGR03598 14 PPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSK----------------TPGRTQLINF--FEVN-DGFRLVDLPGY 74 (179)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccC----------------CCCcceEEEE--EEeC-CcEEEEeCCCC
Confidence 446788999999999999999999986511111110 1123332222 2222 37999999996
Q ss_pred c----------cchHHHHHHHH---hcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccc
Q 047363 85 M----------DFCSEVSTAAR---LSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 85 ~----------dF~~e~~~al~---~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~ 140 (876)
. +|...+...++ .+|++|+|+|+..+.......+++.+...++|+++|+||+|+..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~ 143 (179)
T TIGR03598 75 GYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKADKLK 143 (179)
T ss_pred ccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCC
Confidence 3 23333444444 45899999999988888888888888888999999999999974
No 105
>PRK15494 era GTPase Era; Provisional
Probab=99.42 E-value=4.5e-13 Score=149.91 Aligned_cols=116 Identities=22% Similarity=0.280 Sum_probs=83.0
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccc
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDF 87 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF 87 (876)
+..+|+++|++|+|||||+++|++. ...+.... .+.|.......+.++++.++||||||..+.
T Consensus 51 k~~kV~ivG~~nvGKSTLin~l~~~--k~~ivs~k---------------~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~ 113 (339)
T PRK15494 51 KTVSVCIIGRPNSGKSTLLNRIIGE--KLSIVTPK---------------VQTTRSIITGIITLKDTQVILYDTPGIFEP 113 (339)
T ss_pred ceeEEEEEcCCCCCHHHHHHHHhCC--ceeeccCC---------------CCCccCcEEEEEEeCCeEEEEEECCCcCCC
Confidence 4458999999999999999999865 21111100 112222222344567889999999998543
Q ss_pred --------hHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccc
Q 047363 88 --------CSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 88 --------~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~ 140 (876)
...+..+++.||++|+|+|+.++.......++..+...+.|+++|+||+|+..
T Consensus 114 ~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~ 174 (339)
T PRK15494 114 KGSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIES 174 (339)
T ss_pred cccHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCcc
Confidence 22334568899999999999887766666677777777889999999999864
No 106
>cd03689 RF3_II RF3_II: this subfamily represents the domain II of bacterial Release Factor 3 (RF3). Termination of protein synthesis by the ribosome requires two release factor (RF) classes. The class II RF3 is a GTPase that removes class I RFs (RF1 or RF2) from the ribosome after release of the nascent polypeptide. RF3 in the GDP state binds to the ribosomal class I RF complex, followed by an exchange of GDP for GTP and release of the class I RF. Sequence comparison of class II release factors with elongation factors shows that prokaryotic RF3 is more similar to EF-G whereas eukaryotic eRF3 is more similar to eEF1A, implying that their precise function may differ.
Probab=99.42 E-value=7.8e-13 Score=118.12 Aligned_cols=68 Identities=24% Similarity=0.333 Sum_probs=59.4
Q ss_pred eEEEEEEEeCccCCCCEEEEeccccCCcchhhhccccceeEEeEEEEecCCceeecceeeCCCeEEEecCCceeecccee
Q 047363 439 FLAFARIFSGVLYSGQRVFVLSALYDPLKVESMQKHIQEAELQSLYLMMGQGLKPVASAKAGNVVAIRGLGQQILKSATL 518 (876)
Q Consensus 439 ~iaf~RV~SGtL~~G~~v~vlg~~y~~~~~~~~~~~~~~~~I~~L~l~~G~~~~~v~~v~AGnIv~I~GL~~~i~k~~Tl 518 (876)
.++|+|||||+|++||.|++... + +.++|++||.++|.+..+++++.||||+++.|+++ +..|+||
T Consensus 17 kla~~Rv~sG~l~~g~~v~~~~~------~-------~~~kv~~l~~~~g~~~~~v~~a~aGdIv~v~gl~~-~~~Gdtl 82 (85)
T cd03689 17 RIAFVRVCSGKFERGMKVKHVRL------G-------KEVRLSNPQQFFAQDRETVDEAYPGDIIGLVNPGN-FQIGDTL 82 (85)
T ss_pred EEEEEEEECCEEcCCCEEEEcCC------C-------CEEEeeEeEEEecCCeeEcCEECCCCEEEEECCCC-ccccCEe
Confidence 48999999999999999976431 1 24789999999999999999999999999999988 5689999
Q ss_pred cC
Q 047363 519 SS 520 (876)
Q Consensus 519 ~s 520 (876)
++
T Consensus 83 ~~ 84 (85)
T cd03689 83 TE 84 (85)
T ss_pred eC
Confidence 74
No 107
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.41 E-value=9.1e-13 Score=153.94 Aligned_cols=117 Identities=20% Similarity=0.261 Sum_probs=92.5
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCcc
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMD 86 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~d 86 (876)
.++++|+|+|.+|+|||||+++|++. ...+.. ...|+|.......+.+.++.++||||||+..
T Consensus 36 ~~~~~V~IvG~~nvGKSSL~nrl~~~--~~~~v~---------------~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~ 98 (472)
T PRK03003 36 GPLPVVAVVGRPNVGKSTLVNRILGR--REAVVE---------------DVPGVTRDRVSYDAEWNGRRFTVVDTGGWEP 98 (472)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCc--Cccccc---------------CCCCCCEeeEEEEEEECCcEEEEEeCCCcCC
Confidence 45789999999999999999999865 221111 1235565555556677888999999999763
Q ss_pred --------chHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccc
Q 047363 87 --------FCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 87 --------F~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~ 140 (876)
|...+..+++.||++|+|+|+.++.+.....++..+...++|+++|+||+|+..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~ 160 (472)
T PRK03003 99 DAKGLQASVAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDER 160 (472)
T ss_pred cchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCc
Confidence 445567789999999999999999877777778888888999999999999864
No 108
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.40 E-value=2.8e-12 Score=156.77 Aligned_cols=117 Identities=21% Similarity=0.219 Sum_probs=90.8
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCc-
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHM- 85 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~- 85 (876)
+..++|+|+|++|+|||||+++|++. ...+... ..|+|.......+.+++..+.||||||+.
T Consensus 448 ~~~~kI~ivG~~nvGKSSLin~l~~~--~~~~v~~---------------~~gtT~d~~~~~~~~~~~~~~liDTaG~~~ 510 (712)
T PRK09518 448 SGLRRVALVGRPNVGKSSLLNQLTHE--ERAVVND---------------LAGTTRDPVDEIVEIDGEDWLFIDTAGIKR 510 (712)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCc--cccccCC---------------CCCCCcCcceeEEEECCCEEEEEECCCccc
Confidence 45689999999999999999999876 3211111 12444444445566788899999999964
Q ss_pred --------cchHH--HHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccc
Q 047363 86 --------DFCSE--VSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 86 --------dF~~e--~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~ 140 (876)
+|... ...+++.+|++|+|+|+.++.+.+...+++.+...++|+++|+||+|+..
T Consensus 511 ~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~~~piIiV~NK~DL~~ 575 (712)
T PRK09518 511 RQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLKVMSMAVDAGRALVLVFNKWDLMD 575 (712)
T ss_pred CcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEEchhcCC
Confidence 22222 34568899999999999999999998899888888999999999999964
No 109
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.40 E-value=7.4e-13 Score=152.97 Aligned_cols=114 Identities=21% Similarity=0.220 Sum_probs=92.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCcc----
Q 047363 11 NISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMD---- 86 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~d---- 86 (876)
.|+|+|++|+|||||+++|++. ...+.. ...|+|.......+.|.+..+++|||||+..
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~--~~~~v~---------------~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~ 63 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGK--RDAIVS---------------DTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDG 63 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCC--Ccceec---------------CCCCcccCceEEEEEECCeEEEEEECCCCCCcchh
Confidence 3899999999999999999865 221111 1235565556667788899999999999843
Q ss_pred ----chHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEeccccccc
Q 047363 87 ----FCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLIS 141 (876)
Q Consensus 87 ----F~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~~ 141 (876)
+...+..+++.+|++|+|+|+.+|.......+.+.+.+.++|+++|+||+|....
T Consensus 64 ~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~~ 122 (429)
T TIGR03594 64 LDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKKE 122 (429)
T ss_pred HHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCcc
Confidence 4456788899999999999999999888888888888889999999999998753
No 110
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.39 E-value=2e-12 Score=128.18 Aligned_cols=114 Identities=18% Similarity=0.179 Sum_probs=81.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccchHH
Q 047363 11 NISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFCSE 90 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~~e 90 (876)
+|+++|++++|||||+++|+.. .-... . ...-+.......+.+......+++|||||+.+|...
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~--~~~~~--~------------~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~ 65 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVEN--KFKED--S------------QHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSV 65 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhC--CCCCC--C------------CCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHh
Confidence 7999999999999999999865 21100 0 001122222233333333478899999999999998
Q ss_pred HHHHHHhcCeEEEEEcCCCccccchHHHH-HHh---hhhcCCcEEEEecccccc
Q 047363 91 VSTAARLSDGALVLVDAVEGVHIQTHAVL-RQS---WIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 91 ~~~al~~aDgaIlVvDa~egv~~~t~~~l-~~~---~~~~ip~ilviNKiD~~~ 140 (876)
....++.+|++|+|+|+.+..+.+....| ... ...++|+++|+||+|+..
T Consensus 66 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 119 (161)
T cd04113 66 TRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLAD 119 (161)
T ss_pred HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcch
Confidence 99999999999999999987665543333 222 235789999999999874
No 111
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.39 E-value=1.6e-12 Score=129.44 Aligned_cols=113 Identities=16% Similarity=0.216 Sum_probs=80.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccchHH
Q 047363 11 NISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFCSE 90 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~~e 90 (876)
+|+++|+.|+|||||+++|+.... .... ....+.++....+.+......+++|||||+..|...
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~----~~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 65 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDGY----EPQQ------------LSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTM 65 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC----CCCc------------CCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhh
Confidence 689999999999999999986511 1000 001122332222333344578999999999999999
Q ss_pred HHHHHHhcCeEEEEEcCCCccccchHHHH-HHhhhh--cCCcEEEEeccccc
Q 047363 91 VSTAARLSDGALVLVDAVEGVHIQTHAVL-RQSWIE--KLTPCLVLNKIDRL 139 (876)
Q Consensus 91 ~~~al~~aDgaIlVvDa~egv~~~t~~~l-~~~~~~--~ip~ilviNKiD~~ 139 (876)
...+++.+|++|+|+|+.+....+....| ....+. ++|+++|+||+|+.
T Consensus 66 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~ 117 (161)
T cd04124 66 HASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLD 117 (161)
T ss_pred hHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCc
Confidence 99999999999999999877665443333 333333 68999999999984
No 112
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.38 E-value=2.1e-12 Score=128.88 Aligned_cols=112 Identities=17% Similarity=0.164 Sum_probs=74.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCe-EEEEEcCCCCcc---
Q 047363 11 NISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDY-AINLIDSPGHMD--- 86 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~-~inlIDTPGh~d--- 86 (876)
||+++|++|+|||||+++|.+. ...+... .+.|.......+.+.++ .++|+||||+.+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~--~~~v~~~----------------~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 63 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNA--KPKIADY----------------PFTTLVPNLGVVRVDDGRSFVVADIPGLIEGAS 63 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcC--CccccCC----------------CccccCCcceEEEcCCCCeEEEEecCcccCccc
Confidence 7999999999999999999754 2211110 01122222333445565 999999999753
Q ss_pred ----chHHHHHHHHhcCeEEEEEcCCCc-cccchHH-HHHHhhh-----hcCCcEEEEecccccc
Q 047363 87 ----FCSEVSTAARLSDGALVLVDAVEG-VHIQTHA-VLRQSWI-----EKLTPCLVLNKIDRLI 140 (876)
Q Consensus 87 ----F~~e~~~al~~aDgaIlVvDa~eg-v~~~t~~-~l~~~~~-----~~ip~ilviNKiD~~~ 140 (876)
+.....+.++.+|++++|+|+.+. ...+... ....+.. .++|+++|+||+|+..
T Consensus 64 ~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~ 128 (170)
T cd01898 64 EGKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLD 128 (170)
T ss_pred ccCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCC
Confidence 334455667779999999999876 3333322 2222322 3689999999999864
No 113
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.38 E-value=3.1e-12 Score=126.74 Aligned_cols=114 Identities=15% Similarity=0.179 Sum_probs=77.8
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccchH
Q 047363 10 RNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFCS 89 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~~ 89 (876)
.+|+++|.+|+|||||++++++. ... .. ..... +... .....+......+++|||||+.+|..
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~--~~~-~~-~~~t~------------~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~ 65 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQS--YFV-TD-YDPTI------------EDSY-TKQCEIDGQWAILDILDTAGQEEFSA 65 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhC--CCC-cc-cCCCc------------cceE-EEEEEECCEEEEEEEEECCCCcchhH
Confidence 58999999999999999999876 211 10 00000 0000 11122222346789999999999999
Q ss_pred HHHHHHHhcCeEEEEEcCCCccccchHH-----HHHHhhhhcCCcEEEEecccccc
Q 047363 90 EVSTAARLSDGALVLVDAVEGVHIQTHA-----VLRQSWIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 90 e~~~al~~aDgaIlVvDa~egv~~~t~~-----~l~~~~~~~ip~ilviNKiD~~~ 140 (876)
.....++.+|++++|+|+.+..+.+... +++.....++|+++|+||+|+..
T Consensus 66 ~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~ 121 (164)
T cd04145 66 MREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEH 121 (164)
T ss_pred HHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccc
Confidence 9999999999999999998755433322 22222234789999999999864
No 114
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.38 E-value=2.1e-12 Score=126.38 Aligned_cols=112 Identities=21% Similarity=0.232 Sum_probs=81.7
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccchH-
Q 047363 11 NISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFCS- 89 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~~- 89 (876)
+|+++|++|+|||||+++|... ...... . ..+.+.......+.+.+..++++||||+.++..
T Consensus 3 ~i~l~G~~~~GKstli~~l~~~--~~~~~~----------~-----~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~ 65 (157)
T cd04164 3 KVVIVGKPNVGKSSLLNALAGR--DRAIVS----------D-----IAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDE 65 (157)
T ss_pred EEEEECCCCCCHHHHHHHHHCC--ceEecc----------C-----CCCCccceEEEEEEeCCEEEEEEECCCcCCCcch
Confidence 6899999999999999999765 211110 0 124444444455666788999999999988743
Q ss_pred -------HHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEeccccccc
Q 047363 90 -------EVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLIS 141 (876)
Q Consensus 90 -------e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~~ 141 (876)
.+...++.+|++++|+|+...........+.. ..+.|+++|+||+|+...
T Consensus 66 ~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~vi~v~nK~D~~~~ 122 (157)
T cd04164 66 IEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL--PADKPIIVVLNKSDLLPD 122 (157)
T ss_pred HHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh--hcCCCEEEEEEchhcCCc
Confidence 24567788999999999997655544445444 567899999999999753
No 115
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.37 E-value=1.9e-12 Score=149.85 Aligned_cols=113 Identities=21% Similarity=0.231 Sum_probs=89.0
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCcc---
Q 047363 10 RNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMD--- 86 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~d--- 86 (876)
+.|+|+|++|+|||||+++|++. ...+.. + ..|+|.......+.+.++.+++|||||+.+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~--~~~~v~---------~------~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~ 64 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGK--RDAIVA---------D------TPGVTRDRIYGEAEWLGREFILIDTGGIEPDDD 64 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC--CceeeC---------C------CCCCcccceEEEEEECCcEEEEEECCCCCCcch
Confidence 57999999999999999999765 221111 1 124444444456677889999999999988
Q ss_pred -c----hHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEeccccc
Q 047363 87 -F----CSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRL 139 (876)
Q Consensus 87 -F----~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~ 139 (876)
+ ...+..+++.+|++|+|+|+.++.......+.+++.+.++|+++|+||+|..
T Consensus 65 ~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~ 122 (435)
T PRK00093 65 GFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGP 122 (435)
T ss_pred hHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCc
Confidence 3 3446778899999999999999888777778888888899999999999964
No 116
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.36 E-value=5.5e-12 Score=126.44 Aligned_cols=116 Identities=17% Similarity=0.149 Sum_probs=81.9
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccch
Q 047363 9 IRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFC 88 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~ 88 (876)
.-+|+|+|++|+|||||+++++.. .-.... ....|.+.....+.+......+++|||||+..|.
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~--~~~~~~--------------~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 67 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDK--RFQPVH--------------DLTIGVEFGARMITIDGKQIKLQIWDTAGQESFR 67 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC--CCCCCC--------------CCccceeEEEEEEEECCEEEEEEEEECCCcHHHH
Confidence 468999999999999999999765 210000 0011333333333343334679999999999998
Q ss_pred HHHHHHHHhcCeEEEEEcCCCccccchHHHHH-Hhhh---hcCCcEEEEecccccc
Q 047363 89 SEVSTAARLSDGALVLVDAVEGVHIQTHAVLR-QSWI---EKLTPCLVLNKIDRLI 140 (876)
Q Consensus 89 ~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~-~~~~---~~ip~ilviNKiD~~~ 140 (876)
......++.+|++|+|+|+.+..+.+....|. ...+ .++|+++|+||+|+..
T Consensus 68 ~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~ 123 (168)
T cd01866 68 SITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLES 123 (168)
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccc
Confidence 88899999999999999998765554433332 2222 3689999999999874
No 117
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.36 E-value=2.2e-12 Score=127.57 Aligned_cols=111 Identities=14% Similarity=0.177 Sum_probs=78.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccchHH
Q 047363 11 NISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFCSE 90 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~~e 90 (876)
+|+++|..|+|||||+++|... .-... .+. ..-|.++ ..+.+.+..++++||||+.+|...
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~--~~~~~-------~~~------~t~g~~~----~~~~~~~~~~~l~Dt~G~~~~~~~ 61 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPE--NAQSQ-------IIV------PTVGFNV----ESFEKGNLSFTAFDMSGQGKYRGL 61 (162)
T ss_pred CEEEECCCCCCHHHHHHHHccc--CCCcc-------eec------Cccccce----EEEEECCEEEEEEECCCCHhhHHH
Confidence 5899999999999999999754 10000 000 0112222 234567889999999999999999
Q ss_pred HHHHHHhcCeEEEEEcCCCccccch-HHHHHHh------hhhcCCcEEEEecccccc
Q 047363 91 VSTAARLSDGALVLVDAVEGVHIQT-HAVLRQS------WIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 91 ~~~al~~aDgaIlVvDa~egv~~~t-~~~l~~~------~~~~ip~ilviNKiD~~~ 140 (876)
+..+++.+|++|+|+|+.+...... ...+..+ ...++|+++|+||+|+..
T Consensus 62 ~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~ 118 (162)
T cd04157 62 WEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPD 118 (162)
T ss_pred HHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccC
Confidence 9999999999999999987654321 1112211 124799999999999864
No 118
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.36 E-value=3.3e-12 Score=128.67 Aligned_cols=113 Identities=19% Similarity=0.286 Sum_probs=79.8
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCcc
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMD 86 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~d 86 (876)
..-..|+++|++|+|||||+++|.+. . ... + +...|..+ ..+.++++.+++|||||+..
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~--~--~~~-------~------~~t~g~~~----~~~~~~~~~l~l~D~~G~~~ 70 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGE--D--IDT-------I------SPTLGFQI----KTLEYEGYKLNIWDVGGQKT 70 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccC--C--CCC-------c------CCccccce----EEEEECCEEEEEEECCCCHH
Confidence 34468999999999999999999754 1 100 0 01112222 23445678999999999999
Q ss_pred chHHHHHHHHhcCeEEEEEcCCCccccch-----HHHHHHhhhhcCCcEEEEecccccc
Q 047363 87 FCSEVSTAARLSDGALVLVDAVEGVHIQT-----HAVLRQSWIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 87 F~~e~~~al~~aDgaIlVvDa~egv~~~t-----~~~l~~~~~~~ip~ilviNKiD~~~ 140 (876)
|.......++.+|++|+|+|+.+...... ..++......++|+++|+||+|+..
T Consensus 71 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 129 (173)
T cd04154 71 LRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPG 129 (173)
T ss_pred HHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECccccc
Confidence 98888889999999999999987633222 1122212235789999999999975
No 119
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.36 E-value=3.4e-12 Score=128.26 Aligned_cols=117 Identities=17% Similarity=0.207 Sum_probs=81.7
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccc
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDF 87 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF 87 (876)
++.+|+++|+.|+|||||+++++.. . ..... +..-+.......+.+....+.+++|||||+.+|
T Consensus 1 r~~ki~vvG~~~vGKTsli~~~~~~--~--~~~~~------------~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 64 (170)
T cd04115 1 RIFKIIVIGDSNVGKTCLTYRFCAG--R--FPERT------------EATIGVDFRERTVEIDGERIKVQLWDTAGQERF 64 (170)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC--C--CCCcc------------ccceeEEEEEEEEEECCeEEEEEEEeCCChHHH
Confidence 4679999999999999999999754 1 11000 001122222222333333478999999999998
Q ss_pred hH-HHHHHHHhcCeEEEEEcCCCccccchHHHHHH-hhh----hcCCcEEEEecccccc
Q 047363 88 CS-EVSTAARLSDGALVLVDAVEGVHIQTHAVLRQ-SWI----EKLTPCLVLNKIDRLI 140 (876)
Q Consensus 88 ~~-e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~-~~~----~~ip~ilviNKiD~~~ 140 (876)
.. .....++.+|++|+|+|+.+..+.+....|.. +.. .++|+++|+||+|+..
T Consensus 65 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 123 (170)
T cd04115 65 RKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLRE 123 (170)
T ss_pred HHhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchh
Confidence 74 46777899999999999998776666555543 332 3589999999999864
No 120
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.36 E-value=2e-12 Score=127.25 Aligned_cols=108 Identities=20% Similarity=0.180 Sum_probs=79.2
Q ss_pred EEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccchHH---
Q 047363 14 ILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFCSE--- 90 (876)
Q Consensus 14 IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~~e--- 90 (876)
++|+.|+|||||+++|.+. ...+. ...|+|+......+.+.+..+++|||||+.+|...
T Consensus 1 l~G~~~~GKssl~~~~~~~--~~~~~----------------~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~ 62 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGA--RQKVG----------------NWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSED 62 (158)
T ss_pred CCCCCCCCHHHHHHHHhcC--ccccc----------------CCCCcccccceEEEeeCCeEEEEEECCCccccCCCChh
Confidence 5899999999999999654 21110 12356666666667777889999999999887642
Q ss_pred ---HHHHHH--hcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEeccccccc
Q 047363 91 ---VSTAAR--LSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLIS 141 (876)
Q Consensus 91 ---~~~al~--~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~~ 141 (876)
....+. .+|++|+|+|+... .+....+.++...++|+++|+||+|+...
T Consensus 63 ~~~~~~~~~~~~~d~vi~v~d~~~~--~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~ 116 (158)
T cd01879 63 EKVARDFLLGEKPDLIVNVVDATNL--ERNLYLTLQLLELGLPVVVALNMIDEAEK 116 (158)
T ss_pred HHHHHHHhcCCCCcEEEEEeeCCcc--hhHHHHHHHHHHcCCCEEEEEehhhhccc
Confidence 344443 89999999999863 22344555666788999999999999753
No 121
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.36 E-value=3.3e-12 Score=126.22 Aligned_cols=110 Identities=19% Similarity=0.179 Sum_probs=79.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccchHH
Q 047363 11 NISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFCSE 90 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~~e 90 (876)
+|+++|+.|+|||||+++++.. . ... + ..|+......+.+....+++|||||+..|...
T Consensus 1 ki~iiG~~~~GKssli~~~~~~--~--~~~-------~----------~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 59 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLG--E--VVT-------T----------IPTIGFNVETVEYKNVSFTVWDVGGQDKIRPL 59 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcC--C--CCC-------C----------CCCcCcceEEEEECCEEEEEEECCCChhhHHH
Confidence 4899999999999999999866 2 100 0 01111222345566889999999999999888
Q ss_pred HHHHHHhcCeEEEEEcCCCccccc-hHHHHH----HhhhhcCCcEEEEeccccccc
Q 047363 91 VSTAARLSDGALVLVDAVEGVHIQ-THAVLR----QSWIEKLTPCLVLNKIDRLIS 141 (876)
Q Consensus 91 ~~~al~~aDgaIlVvDa~egv~~~-t~~~l~----~~~~~~ip~ilviNKiD~~~~ 141 (876)
....++.+|++++|+|+....... ....+. .+...+.|+++|+||+|+...
T Consensus 60 ~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~ 115 (158)
T cd00878 60 WKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGA 115 (158)
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccc
Confidence 888999999999999998763221 222232 233457899999999999753
No 122
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.36 E-value=7e-12 Score=125.49 Aligned_cols=117 Identities=17% Similarity=0.142 Sum_probs=81.0
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccc
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDF 87 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF 87 (876)
...+|+++|.+|+|||||++++.......... ..-|++.....+.+......+.++||||+.+|
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~----------------~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~ 65 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFI----------------STIGIDFKIRTIELDGKKIKLQIWDTAGQERF 65 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccc----------------cCccceEEEEEEEECCEEEEEEEEeCCchHHH
Confidence 45789999999999999999998652111000 01122222222333223467899999999999
Q ss_pred hHHHHHHHHhcCeEEEEEcCCCccccchHHHHH-Hhh---hhcCCcEEEEecccccc
Q 047363 88 CSEVSTAARLSDGALVLVDAVEGVHIQTHAVLR-QSW---IEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 88 ~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~-~~~---~~~ip~ilviNKiD~~~ 140 (876)
.......++.+|++|+|+|+.++.+.....-|. ... ..++|+++|+||+|+..
T Consensus 66 ~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~ 122 (167)
T cd01867 66 RTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEE 122 (167)
T ss_pred HHHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECccccc
Confidence 988889999999999999998765544322222 222 24689999999999975
No 123
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.35 E-value=4.4e-12 Score=126.62 Aligned_cols=116 Identities=21% Similarity=0.214 Sum_probs=81.4
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcC--eEEEEEcCCCC
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKD--YAINLIDSPGH 84 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~--~~inlIDTPGh 84 (876)
...++|+++|+.|+|||||+++|+.. ...... + ..+........+.+.+ ..+.++||||+
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~----~~~~~~-~-------------~t~~~~~~~~~~~~~~~~~~~~~~D~~g~ 66 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQG----LFPPGQ-G-------------ATIGVDFMIKTVEIKGEKIKLQIWDTAGQ 66 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhC----CCCCCC-C-------------CceeeEEEEEEEEECCEEEEEEEEECCCc
Confidence 56799999999999999999999754 111100 0 0111112222334444 56788999999
Q ss_pred ccchHHHHHHHHhcCeEEEEEcCCCccccchHHHH----HHhhhhcCCcEEEEecccccc
Q 047363 85 MDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVL----RQSWIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 85 ~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l----~~~~~~~ip~ilviNKiD~~~ 140 (876)
.+|......+++.+|++|+|+|+.++........| +.....++|.++|+||+|+..
T Consensus 67 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~ 126 (169)
T cd04114 67 ERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAE 126 (169)
T ss_pred HHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 99999999999999999999999876554333333 333344789999999999863
No 124
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.35 E-value=6.6e-12 Score=125.42 Aligned_cols=114 Identities=18% Similarity=0.196 Sum_probs=77.0
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccchHH
Q 047363 11 NISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFCSE 90 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~~e 90 (876)
+|+++|++|+|||||+++|+.. . ...... ...+.+.....+.+......+++|||||+.+|...
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~--~--~~~~~~------------~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 65 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNK--K--FSNQYK------------ATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSL 65 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcC--C--CCcCcC------------CccceEEEEEEEEECCEEEEEEEEeCCChHHHHhH
Confidence 6899999999999999999865 2 111000 00111111111222222356789999999999988
Q ss_pred HHHHHHhcCeEEEEEcCCCccccchHHHHHH-----hh---hhcCCcEEEEecccccc
Q 047363 91 VSTAARLSDGALVLVDAVEGVHIQTHAVLRQ-----SW---IEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 91 ~~~al~~aDgaIlVvDa~egv~~~t~~~l~~-----~~---~~~ip~ilviNKiD~~~ 140 (876)
....++.+|++|+|+|+.+..+.+....|.. +. ..++|+++|+||+|+..
T Consensus 66 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 123 (172)
T cd01862 66 GVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEE 123 (172)
T ss_pred HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECccccc
Confidence 8999999999999999987654333322322 11 12789999999999974
No 125
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.35 E-value=3.4e-12 Score=138.60 Aligned_cols=111 Identities=25% Similarity=0.149 Sum_probs=78.0
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccc---
Q 047363 11 NISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDF--- 87 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF--- 87 (876)
.|+++|++|+|||||+++|++. .-.+.....+ .|...........+..+.|+||||+.+.
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~--~~~~vs~~~~---------------TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~ 64 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQ--KISITSPKAQ---------------TTRNRISGIHTTGASQIIFIDTPGFHEKKHS 64 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCC--cEeecCCCCC---------------cccCcEEEEEEcCCcEEEEEECcCCCCCcch
Confidence 5899999999999999999876 3211111111 1111111122234678999999997653
Q ss_pred -----hHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEeccccc
Q 047363 88 -----CSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRL 139 (876)
Q Consensus 88 -----~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~ 139 (876)
...+..+++.+|++++|+|+..+.... ..++..+...+.|+++|+||+|+.
T Consensus 65 l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~ilV~NK~Dl~ 120 (270)
T TIGR00436 65 LNRLMMKEARSAIGGVDLILFVVDSDQWNGDG-EFVLTKLQNLKRPVVLTRNKLDNK 120 (270)
T ss_pred HHHHHHHHHHHHHhhCCEEEEEEECCCCCchH-HHHHHHHHhcCCCEEEEEECeeCC
Confidence 223567889999999999999865544 556666777889999999999986
No 126
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.34 E-value=8.3e-12 Score=123.59 Aligned_cols=114 Identities=14% Similarity=0.192 Sum_probs=79.0
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEE--EcCeEEEEEcCCCCccch
Q 047363 11 NISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALH--YKDYAINLIDSPGHMDFC 88 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~--~~~~~inlIDTPGh~dF~ 88 (876)
+|+++|..++|||||+++|.......... . ..+.......+.+. .....++||||||+.+|.
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~~~~~~----~------------t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 65 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIFTKDYK----K------------TIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFD 65 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCC----C------------cEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHH
Confidence 68999999999999999997641110000 0 01111111222222 235789999999999999
Q ss_pred HHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhh---hcCCcEEEEecccccc
Q 047363 89 SEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWI---EKLTPCLVLNKIDRLI 140 (876)
Q Consensus 89 ~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~---~~ip~ilviNKiD~~~ 140 (876)
......++.+|++++|+|+.+..+......|..... .++|+++|+||+|+..
T Consensus 66 ~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 120 (162)
T cd04106 66 AITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLD 120 (162)
T ss_pred HhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhccc
Confidence 989999999999999999987655444333332222 3789999999999964
No 127
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.34 E-value=1.6e-12 Score=126.03 Aligned_cols=113 Identities=25% Similarity=0.302 Sum_probs=78.5
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcC--eEEEEEcCCCCccc
Q 047363 10 RNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKD--YAINLIDSPGHMDF 87 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~--~~inlIDTPGh~dF 87 (876)
.+|+++|++|+|||||+++|+.. . ... +..++++.......+.+++ +.+.+|||||+.+|
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~--~-~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~ 63 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGN--K-FIT---------------EYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDY 63 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCC--C-CcC---------------cCCCCceeeeeEEEEEECCEEEEEEEEECCCcccc
Confidence 58999999999999999999865 2 111 1112344444444455566 88999999999999
Q ss_pred hHHHHHHHHhcCeEEEEEcCCCcc-------ccchHHHHHHhhhhcCCcEEEEeccccccc
Q 047363 88 CSEVSTAARLSDGALVLVDAVEGV-------HIQTHAVLRQSWIEKLTPCLVLNKIDRLIS 141 (876)
Q Consensus 88 ~~e~~~al~~aDgaIlVvDa~egv-------~~~t~~~l~~~~~~~ip~ilviNKiD~~~~ 141 (876)
........+.+++++.++|....+ ..+...+++.+.. ++|+++++||+|+...
T Consensus 64 ~~~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~~ 123 (161)
T TIGR00231 64 RAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES-NVPIILVGNKIDLRDA 123 (161)
T ss_pred hHHHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc-CCcEEEEEEcccCCcc
Confidence 777777777777777777765442 2223333444433 8899999999999754
No 128
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.34 E-value=1e-11 Score=123.83 Aligned_cols=117 Identities=18% Similarity=0.201 Sum_probs=79.9
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccch
Q 047363 9 IRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFC 88 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~ 88 (876)
+.+|+++|..|+|||||+++|+....... +. ..-|.+.....+.+......+.+|||||+.+|.
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~----------~~------~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 65 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTES----------YI------STIGVDFKIRTIELDGKTIKLQIWDTAGQERFR 65 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCC----------CC------CccceeEEEEEEEECCEEEEEEEEECCCcHhHH
Confidence 46899999999999999999985511100 00 011223333333332234678999999999999
Q ss_pred HHHHHHHHhcCeEEEEEcCCCccccchHHHH-HHhhh---hcCCcEEEEeccccccc
Q 047363 89 SEVSTAARLSDGALVLVDAVEGVHIQTHAVL-RQSWI---EKLTPCLVLNKIDRLIS 141 (876)
Q Consensus 89 ~e~~~al~~aDgaIlVvDa~egv~~~t~~~l-~~~~~---~~ip~ilviNKiD~~~~ 141 (876)
......++.+|++|+|+|+.+..+......| ..... .++|+++|+||+|+...
T Consensus 66 ~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~ 122 (166)
T cd01869 66 TITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDK 122 (166)
T ss_pred HHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccc
Confidence 9889999999999999999875443332222 22222 46899999999998643
No 129
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.34 E-value=6.9e-12 Score=124.11 Aligned_cols=114 Identities=19% Similarity=0.207 Sum_probs=79.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccchHH
Q 047363 11 NISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFCSE 90 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~~e 90 (876)
+|+++|++|+|||||+++|+.. . ..... ....+.+.....+.+......++++||||+..|...
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~--~--~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~ 65 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDG--K--FSEQY------------KSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSI 65 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcC--C--CCCCC------------CCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHH
Confidence 6899999999999999999865 1 11000 001122222222222222368899999999999999
Q ss_pred HHHHHHhcCeEEEEEcCCCccccchHHHHH-Hhhh---hcCCcEEEEecccccc
Q 047363 91 VSTAARLSDGALVLVDAVEGVHIQTHAVLR-QSWI---EKLTPCLVLNKIDRLI 140 (876)
Q Consensus 91 ~~~al~~aDgaIlVvDa~egv~~~t~~~l~-~~~~---~~ip~ilviNKiD~~~ 140 (876)
....++.+|++|+|+|+.+..+.+....|. .... .++|+++|+||+|+..
T Consensus 66 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~ 119 (164)
T smart00175 66 TSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLED 119 (164)
T ss_pred HHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhccc
Confidence 999999999999999998766554433332 2222 4689999999999864
No 130
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.33 E-value=4.5e-12 Score=125.54 Aligned_cols=110 Identities=18% Similarity=0.159 Sum_probs=77.7
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccchHH
Q 047363 11 NISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFCSE 90 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~~e 90 (876)
+|+++|+.++|||||+++|... . .. +.. ..-|.++ ..+.+.+..+++|||||+.+|...
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~--~--~~----------~~~---~t~~~~~----~~~~~~~~~~~i~Dt~G~~~~~~~ 59 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLG--E--VV----------TTI---PTIGFNV----ETVTYKNLKFQVWDLGGQTSIRPY 59 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccC--C--Cc----------CcC---CccCcCe----EEEEECCEEEEEEECCCCHHHHHH
Confidence 4899999999999999999644 1 11 000 0112222 244567889999999999999988
Q ss_pred HHHHHHhcCeEEEEEcCCCccccch-HHHHHH-hh---hhcCCcEEEEeccccccc
Q 047363 91 VSTAARLSDGALVLVDAVEGVHIQT-HAVLRQ-SW---IEKLTPCLVLNKIDRLIS 141 (876)
Q Consensus 91 ~~~al~~aDgaIlVvDa~egv~~~t-~~~l~~-~~---~~~ip~ilviNKiD~~~~ 141 (876)
...+++.+|++|+|+|+.+...... ...+.. .. ..++|+++|+||+|+...
T Consensus 60 ~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~ 115 (158)
T cd04151 60 WRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGA 115 (158)
T ss_pred HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCC
Confidence 8899999999999999986533221 222222 22 247899999999998743
No 131
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.33 E-value=5.7e-12 Score=154.05 Aligned_cols=119 Identities=19% Similarity=0.299 Sum_probs=94.8
Q ss_pred CCCCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCC
Q 047363 5 DTRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGH 84 (876)
Q Consensus 5 ~~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh 84 (876)
.+..+++|+|+|++|+|||||+++|++. ...+.. ...|+|.........|.+..+++|||||.
T Consensus 271 ~~~~~~~V~IvG~~nvGKSSL~n~l~~~--~~~iv~---------------~~pGvT~d~~~~~~~~~~~~~~liDT~G~ 333 (712)
T PRK09518 271 GPKAVGVVAIVGRPNVGKSTLVNRILGR--REAVVE---------------DTPGVTRDRVSYDAEWAGTDFKLVDTGGW 333 (712)
T ss_pred ccccCcEEEEECCCCCCHHHHHHHHhCC--Cceeec---------------CCCCeeEEEEEEEEEECCEEEEEEeCCCc
Confidence 3455789999999999999999999865 221111 12356666555666778899999999997
Q ss_pred cc--------chHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccc
Q 047363 85 MD--------FCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 85 ~d--------F~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~ 140 (876)
.. |...+..+++.+|++|+|+|+.++.......+.+.+...++|+++|+||+|+..
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~ 397 (712)
T PRK09518 334 EADVEGIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQA 397 (712)
T ss_pred CCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECccccc
Confidence 63 455677889999999999999999888777788888889999999999999853
No 132
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.33 E-value=9.2e-12 Score=124.38 Aligned_cols=117 Identities=15% Similarity=0.173 Sum_probs=81.2
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccch
Q 047363 9 IRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFC 88 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~ 88 (876)
+.+|+++|+.|+|||||+++|... ..... .+ ..-|.++....+.+....+.+.+|||||+..|.
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~----~~~~~----------~~--~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~ 65 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEK----KFMAD----------CP--HTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFR 65 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC----CCCCC----------CC--cccceeEEEEEEEECCEEEEEEEEECCCcHHHH
Confidence 368999999999999999999754 11110 00 011223322233333335688999999999999
Q ss_pred HHHHHHHHhcCeEEEEEcCCCccccchHHHH-HHhh---hhcCCcEEEEeccccccc
Q 047363 89 SEVSTAARLSDGALVLVDAVEGVHIQTHAVL-RQSW---IEKLTPCLVLNKIDRLIS 141 (876)
Q Consensus 89 ~e~~~al~~aDgaIlVvDa~egv~~~t~~~l-~~~~---~~~ip~ilviNKiD~~~~ 141 (876)
......++.+|++|+|+|..+..+.+....| .... ..+.|+++|+||+|+...
T Consensus 66 ~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~ 122 (166)
T cd04122 66 AVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQ 122 (166)
T ss_pred HHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc
Confidence 9999999999999999999876554443333 2222 245789999999999653
No 133
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.33 E-value=6.1e-12 Score=126.33 Aligned_cols=110 Identities=20% Similarity=0.251 Sum_probs=79.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccchHH
Q 047363 11 NISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFCSE 90 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~~e 90 (876)
+|+++|..|+|||||+++|... ... . + ...-|.+ ...+.+.++.++++||||+..|...
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~----~~~-----~--~------~~t~g~~----~~~~~~~~~~~~i~D~~G~~~~~~~ 59 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE----IPK-----K--V------APTVGFT----PTKLRLDKYEVCIFDLGGGANFRGI 59 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC----CCc-----c--c------cCcccce----EEEEEECCEEEEEEECCCcHHHHHH
Confidence 4899999999999999998643 110 0 0 0011222 2345567899999999999999999
Q ss_pred HHHHHHhcCeEEEEEcCCCccccch-HHHHHHhhh----hcCCcEEEEeccccccc
Q 047363 91 VSTAARLSDGALVLVDAVEGVHIQT-HAVLRQSWI----EKLTPCLVLNKIDRLIS 141 (876)
Q Consensus 91 ~~~al~~aDgaIlVvDa~egv~~~t-~~~l~~~~~----~~ip~ilviNKiD~~~~ 141 (876)
...+++.+|++|+|+|+.+...... ...+..+.. .++|+++|+||+|+...
T Consensus 60 ~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~ 115 (167)
T cd04161 60 WVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNA 115 (167)
T ss_pred HHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCC
Confidence 9999999999999999987543322 223333322 47899999999999754
No 134
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.33 E-value=8.7e-12 Score=124.32 Aligned_cols=113 Identities=26% Similarity=0.247 Sum_probs=73.0
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccchH
Q 047363 10 RNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFCS 89 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~~ 89 (876)
|+|+++|++|+|||||+++|+.. ...+.. ..+.|.......+.+++..++||||||+.+...
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~--~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 62 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRA--KPEVAP----------------YPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPL 62 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcC--CCccCC----------------CCCcccceeEEEEccCceEEEEEECCCcCCccc
Confidence 68999999999999999999865 211100 012233333334445678999999999854211
Q ss_pred --------HHHHHH-HhcCeEEEEEcCCCccccc---hHHHHHHhhhh--cCCcEEEEecccccc
Q 047363 90 --------EVSTAA-RLSDGALVLVDAVEGVHIQ---THAVLRQSWIE--KLTPCLVLNKIDRLI 140 (876)
Q Consensus 90 --------e~~~al-~~aDgaIlVvDa~egv~~~---t~~~l~~~~~~--~ip~ilviNKiD~~~ 140 (876)
....++ ..+|++|+|+|+.+..... ....+..+... ++|+++|+||+|+..
T Consensus 63 ~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~ 127 (168)
T cd01897 63 EERNTIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLT 127 (168)
T ss_pred cCCchHHHHHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCc
Confidence 112222 3368999999998654321 12344444444 789999999999964
No 135
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=2.2e-12 Score=148.21 Aligned_cols=128 Identities=31% Similarity=0.387 Sum_probs=89.7
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceee---ccChhhhhhcceeee-eeEEEEEEcCeEEEEEcCCCC
Q 047363 9 IRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRF---MDYLDEEQRRAITMK-SSSIALHYKDYAINLIDSPGH 84 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~---~d~~~~E~~rgiti~-~~~i~~~~~~~~inlIDTPGh 84 (876)
-+.+||+||+++|||-|++.|.+. + +.. ..+|.++- ..+.+.+.-+.-|.. .....-.++---+.+||||||
T Consensus 475 SPIcCilGHVDTGKTKlld~ir~t--N-Vqe-geaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpgh 550 (1064)
T KOG1144|consen 475 SPICCILGHVDTGKTKLLDKIRGT--N-VQE-GEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGH 550 (1064)
T ss_pred CceEEEeecccccchHHHHHhhcc--c-ccc-ccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCc
Confidence 456899999999999999999664 2 111 11222110 001111110000000 000000111234789999999
Q ss_pred ccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccc
Q 047363 85 MDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 85 ~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~ 140 (876)
..|..-..++...||.||+|||..+|+.+||..-++.++..+.|+|+.+||+||+-
T Consensus 551 EsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~rktpFivALNKiDRLY 606 (1064)
T KOG1144|consen 551 ESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMRKTPFIVALNKIDRLY 606 (1064)
T ss_pred hhhhhhhhccccccceEEEEeehhccCCcchhHHHHHHHhcCCCeEEeehhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999985
No 136
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.32 E-value=8.8e-12 Score=123.78 Aligned_cols=113 Identities=15% Similarity=0.210 Sum_probs=76.5
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccchHH
Q 047363 11 NISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFCSE 90 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~~e 90 (876)
.|+++|++|+|||||+++|+.. . ......... . .. ....+.+....+.+.+|||||+.+|...
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~--~--~~~~~~~t~---------~---~~-~~~~~~~~~~~~~l~i~Dt~g~~~~~~~ 64 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQG--H--FVDDYDPTI---------E---DS-YRKQIEIDGEVCLLDILDTAGQEEFSAM 64 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC--c--CCcccCCch---------h---hh-EEEEEEECCEEEEEEEEECCCcccchHH
Confidence 6899999999999999999865 2 110000000 0 00 0111222223468899999999999999
Q ss_pred HHHHHHhcCeEEEEEcCCCccccchHHHH-----HHhhhhcCCcEEEEecccccc
Q 047363 91 VSTAARLSDGALVLVDAVEGVHIQTHAVL-----RQSWIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 91 ~~~al~~aDgaIlVvDa~egv~~~t~~~l-----~~~~~~~ip~ilviNKiD~~~ 140 (876)
....++.+|++|+|+|+.+..+.....-| +.....++|+++|+||+|+..
T Consensus 65 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~ 119 (164)
T smart00173 65 RDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLES 119 (164)
T ss_pred HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 99999999999999999865433222222 222234689999999999864
No 137
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.32 E-value=1.3e-11 Score=127.73 Aligned_cols=114 Identities=15% Similarity=0.158 Sum_probs=79.5
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEE-EcCeEEEEEcCCCCccchH
Q 047363 11 NISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALH-YKDYAINLIDSPGHMDFCS 89 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~-~~~~~inlIDTPGh~dF~~ 89 (876)
+|+++|..|+|||||+++|+.. . ..... ....|.......+.+. ...+.+.||||||+..|..
T Consensus 2 KivivG~~~vGKTsli~~l~~~--~--~~~~~------------~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~ 65 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHG--I--FSQHY------------KATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGG 65 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHcC--C--CCCCC------------CCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhh
Confidence 6899999999999999999865 1 11000 0011222222223333 3357889999999999998
Q ss_pred HHHHHHHhcCeEEEEEcCCCccccchHHHHHH-hh-------hhcCCcEEEEecccccc
Q 047363 90 EVSTAARLSDGALVLVDAVEGVHIQTHAVLRQ-SW-------IEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 90 e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~-~~-------~~~ip~ilviNKiD~~~ 140 (876)
.....++.+|++|+|+|..+..+......|.. +. ..++|++||+||+|+..
T Consensus 66 ~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~ 124 (201)
T cd04107 66 MTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKK 124 (201)
T ss_pred hHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCccc
Confidence 88999999999999999987655444433322 11 25689999999999964
No 138
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.32 E-value=8.1e-12 Score=125.17 Aligned_cols=110 Identities=21% Similarity=0.241 Sum_probs=79.2
Q ss_pred EEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccchHHH
Q 047363 12 ISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFCSEV 91 (876)
Q Consensus 12 I~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~~e~ 91 (876)
|+++|..|+|||||+.+|... .- .. ++.+ .-|. ....+.+.+..+.+|||||+.+|....
T Consensus 2 i~ivG~~~vGKTsli~~~~~~--~~-~~----------~~~p---t~g~----~~~~i~~~~~~l~i~Dt~G~~~~~~~~ 61 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSE--RS-LE----------SVVP---TTGF----NSVAIPTQDAIMELLEIGGSQNLRKYW 61 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcC--CC-cc----------cccc---cCCc----ceEEEeeCCeEEEEEECCCCcchhHHH
Confidence 789999999999999999855 11 00 0000 0121 124456778999999999999999999
Q ss_pred HHHHHhcCeEEEEEcCCCccccchH-HHHHHhh--hhcCCcEEEEeccccccc
Q 047363 92 STAARLSDGALVLVDAVEGVHIQTH-AVLRQSW--IEKLTPCLVLNKIDRLIS 141 (876)
Q Consensus 92 ~~al~~aDgaIlVvDa~egv~~~t~-~~l~~~~--~~~ip~ilviNKiD~~~~ 141 (876)
..+++.+|++|+|+|+.+....... ..+..+. ..++|+++|+||+|+...
T Consensus 62 ~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~ 114 (164)
T cd04162 62 KRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAA 114 (164)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCC
Confidence 9999999999999999875433222 2223332 257899999999998653
No 139
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.32 E-value=1.1e-11 Score=122.84 Aligned_cols=114 Identities=16% Similarity=0.204 Sum_probs=79.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccchHH
Q 047363 11 NISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFCSE 90 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~~e 90 (876)
+|+++|++++|||||+++|+.. . .... .....|.+.....+.+...+..+++|||||+.+|...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~--~--~~~~------------~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~ 66 (163)
T cd01860 3 KLVLLGDSSVGKSSLVLRFVKN--E--FSEN------------QESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSL 66 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcC--C--CCCC------------CCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHH
Confidence 6899999999999999999866 2 1100 0111132333333444444578899999999999888
Q ss_pred HHHHHHhcCeEEEEEcCCCccccch-HHHHHHhhh---hcCCcEEEEecccccc
Q 047363 91 VSTAARLSDGALVLVDAVEGVHIQT-HAVLRQSWI---EKLTPCLVLNKIDRLI 140 (876)
Q Consensus 91 ~~~al~~aDgaIlVvDa~egv~~~t-~~~l~~~~~---~~ip~ilviNKiD~~~ 140 (876)
....++.+|++|+|+|+.+...... ...+..+.. .++|+++++||+|+..
T Consensus 67 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 120 (163)
T cd01860 67 APMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLES 120 (163)
T ss_pred HHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 8889999999999999986544332 223333333 3578999999999874
No 140
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.31 E-value=1.3e-11 Score=124.65 Aligned_cols=112 Identities=19% Similarity=0.173 Sum_probs=80.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccc
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDF 87 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF 87 (876)
..++|+++|+.|+|||||+++|... . .. .. ..|+......+.+.+..+.++||||+..|
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~--~--~~----------~~-------~~t~~~~~~~~~~~~~~~~l~D~~G~~~~ 72 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLG--E--VV----------HT-------SPTIGSNVEEIVYKNIRFLMWDIGGQESL 72 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccC--C--CC----------Cc-------CCccccceEEEEECCeEEEEEECCCCHHH
Confidence 4578999999999999999999754 1 10 00 01112222345567889999999999999
Q ss_pred hHHHHHHHHhcCeEEEEEcCCCccccch-HHHHHHh-hh---hcCCcEEEEecccccc
Q 047363 88 CSEVSTAARLSDGALVLVDAVEGVHIQT-HAVLRQS-WI---EKLTPCLVLNKIDRLI 140 (876)
Q Consensus 88 ~~e~~~al~~aDgaIlVvDa~egv~~~t-~~~l~~~-~~---~~ip~ilviNKiD~~~ 140 (876)
......+++.+|++|+|+|+.+...... ...+... .. .++|+++++||+|+..
T Consensus 73 ~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~ 130 (174)
T cd04153 73 RSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKG 130 (174)
T ss_pred HHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCC
Confidence 9888999999999999999987643221 1222222 21 3589999999999864
No 141
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.31 E-value=8.2e-12 Score=129.03 Aligned_cols=112 Identities=17% Similarity=0.201 Sum_probs=77.0
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcC--eEEEEEcCCCCccch
Q 047363 11 NISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKD--YAINLIDSPGHMDFC 88 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~--~~inlIDTPGh~dF~ 88 (876)
+|+++|+.|+|||||+++|+.... ... +..... .. ....+.+.+ ..++||||||+.+|.
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~----~~~------~~~t~~-------~~--~~~~~~~~~~~~~l~i~D~~G~~~~~ 61 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTF----EPK------YRRTVE-------EM--HRKEYEVGGVSLTLDILDTSGSYSFP 61 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC----Ccc------CCCchh-------hh--eeEEEEECCEEEEEEEEECCCchhhh
Confidence 489999999999999999986511 100 000000 00 111233333 688999999999998
Q ss_pred HHHHHHHHhcCeEEEEEcCCCccccchHHHH-----HHhhhhcCCcEEEEeccccccc
Q 047363 89 SEVSTAARLSDGALVLVDAVEGVHIQTHAVL-----RQSWIEKLTPCLVLNKIDRLIS 141 (876)
Q Consensus 89 ~e~~~al~~aDgaIlVvDa~egv~~~t~~~l-----~~~~~~~ip~ilviNKiD~~~~ 141 (876)
.....+++.+|++|+|+|+.+.........| ......++|+++|+||+|+...
T Consensus 62 ~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~ 119 (198)
T cd04147 62 AMRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEE 119 (198)
T ss_pred HHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccc
Confidence 8888899999999999999876544432222 2222357999999999998653
No 142
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.31 E-value=1.4e-11 Score=121.08 Aligned_cols=115 Identities=24% Similarity=0.183 Sum_probs=80.8
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccch
Q 047363 9 IRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFC 88 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~ 88 (876)
.+.|+++|++|+|||||+++|++. .-...... .+.+.......+......+.+|||||+.+..
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~--~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~ 65 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQ--KISIVSPK---------------PQTTRNRIRGIYTDDDAQIIFVDTPGIHKPK 65 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC--ceEeccCC---------------CCceeceEEEEEEcCCeEEEEEECCCCCcch
Confidence 468999999999999999999765 21110000 0011111112233346789999999987643
Q ss_pred --------HHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccc
Q 047363 89 --------SEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 89 --------~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~ 140 (876)
......++.+|++++|+|+.+........+++.+...+.|.++|+||+|+..
T Consensus 66 ~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~ 125 (168)
T cd04163 66 KKLGERMVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVK 125 (168)
T ss_pred HHHHHHHHHHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhccc
Confidence 2445678899999999999987555556666777777899999999999974
No 143
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.31 E-value=1.4e-11 Score=121.46 Aligned_cols=113 Identities=14% Similarity=0.170 Sum_probs=76.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccchHH
Q 047363 11 NISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFCSE 90 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~~e 90 (876)
+|+++|.+|+|||||+++|+.. . ........ .+.+. ...+.+....+.+++|||||+.+|...
T Consensus 3 ki~iiG~~~vGKTsl~~~~~~~--~--~~~~~~~t------------~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l 65 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLIQN--H--FVDEYDPT------------IEDSY-RKQVVIDGETCLLDILDTAGQEEYSAM 65 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhC--C--CcCCcCCc------------chheE-EEEEEECCEEEEEEEEECCCCcchHHH
Confidence 6899999999999999999865 2 11000000 00011 111222222356889999999999999
Q ss_pred HHHHHHhcCeEEEEEcCCCccccchHH-HHHHh----hhhcCCcEEEEecccccc
Q 047363 91 VSTAARLSDGALVLVDAVEGVHIQTHA-VLRQS----WIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 91 ~~~al~~aDgaIlVvDa~egv~~~t~~-~l~~~----~~~~ip~ilviNKiD~~~ 140 (876)
....++.+|++++|+|..+........ .+... ...++|+++|+||+|+..
T Consensus 66 ~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~ 120 (162)
T cd04138 66 RDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA 120 (162)
T ss_pred HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 999999999999999998654333222 22222 234789999999999875
No 144
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.31 E-value=1.3e-11 Score=122.11 Aligned_cols=114 Identities=18% Similarity=0.176 Sum_probs=79.4
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccchHH
Q 047363 11 NISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFCSE 90 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~~e 90 (876)
+|+++|+.|+|||||+++|+.. .-.. . .+...+.+.....+.+......+.++||||+..|...
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~--~~~~--~------------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~ 65 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDD--TFDP--D------------LAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTL 65 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcC--CCCc--c------------cCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhh
Confidence 6899999999999999999865 1100 0 0011122322222333233467999999999999888
Q ss_pred HHHHHHhcCeEEEEEcCCCccccchHHHH-----HHhhhhcCCcEEEEecccccc
Q 047363 91 VSTAARLSDGALVLVDAVEGVHIQTHAVL-----RQSWIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 91 ~~~al~~aDgaIlVvDa~egv~~~t~~~l-----~~~~~~~ip~ilviNKiD~~~ 140 (876)
....++.+|++|+|+|+.+..+.+....| +.+...++|+++|+||+|+..
T Consensus 66 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~ 120 (161)
T cd01863 66 TSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKEN 120 (161)
T ss_pred hHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccc
Confidence 88899999999999999876554443323 222345789999999999973
No 145
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.31 E-value=1.8e-11 Score=121.38 Aligned_cols=114 Identities=14% Similarity=0.208 Sum_probs=78.9
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccchHH
Q 047363 11 NISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFCSE 90 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~~e 90 (876)
+|+++|++|+|||||+++|+..... .. + ...-|.+.....+.+......+++|||||+.+|...
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~---~~-------~------~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 65 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFV---SK-------Y------LPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEV 65 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC---CC-------C------CCccceeEEEEEEEECCeEEEEEEEECCccHHHHHH
Confidence 6899999999999999999876111 00 0 000122222333344344578999999999999988
Q ss_pred HHHHHHhcCeEEEEEcCCCccccchHHHH-HHhh----h----hcCCcEEEEecccccc
Q 047363 91 VSTAARLSDGALVLVDAVEGVHIQTHAVL-RQSW----I----EKLTPCLVLNKIDRLI 140 (876)
Q Consensus 91 ~~~al~~aDgaIlVvDa~egv~~~t~~~l-~~~~----~----~~ip~ilviNKiD~~~ 140 (876)
....++.+|++|+|+|+.+..+.....-| ..+. . .++|+++|+||.|+..
T Consensus 66 ~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 124 (168)
T cd04119 66 RNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTK 124 (168)
T ss_pred HHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhccc
Confidence 88889999999999999876543332222 2221 1 4588999999999863
No 146
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.30 E-value=1.2e-11 Score=126.44 Aligned_cols=113 Identities=23% Similarity=0.164 Sum_probs=80.5
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCcc
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMD 86 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~d 86 (876)
.+-.+|+++|..|+|||||+++|... . ... + ....+.+ ...+.+.++.++++||||+..
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~--~--~~~-------~------~~t~~~~----~~~~~~~~~~~~~~D~~G~~~ 73 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKND--R--LAQ-------H------QPTQHPT----SEELAIGNIKFTTFDLGGHQQ 73 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcC--C--Ccc-------c------CCccccc----eEEEEECCEEEEEEECCCCHH
Confidence 44588999999999999999999754 1 100 0 0011222 234456788999999999999
Q ss_pred chHHHHHHHHhcCeEEEEEcCCCccccch-HHHHHHh----hhhcCCcEEEEecccccc
Q 047363 87 FCSEVSTAARLSDGALVLVDAVEGVHIQT-HAVLRQS----WIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 87 F~~e~~~al~~aDgaIlVvDa~egv~~~t-~~~l~~~----~~~~ip~ilviNKiD~~~ 140 (876)
+......+++.+|++|+|+|+.+...... ...+..+ ...++|+++|+||+|+..
T Consensus 74 ~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~ 132 (184)
T smart00178 74 ARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY 132 (184)
T ss_pred HHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC
Confidence 98888999999999999999986533222 2222222 225789999999999864
No 147
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.30 E-value=1.6e-11 Score=119.70 Aligned_cols=113 Identities=20% Similarity=0.205 Sum_probs=78.9
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccchHH
Q 047363 11 NISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFCSE 90 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~~e 90 (876)
+|+++|++++|||||+++|... ..... .....+.+.....+........++++||||+..|...
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~--~~~~~--------------~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~ 65 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDG--KFDEN--------------YKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSI 65 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhC--cCCCc--------------cCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHH
Confidence 6899999999999999999866 21110 0001122222222222234578999999999999999
Q ss_pred HHHHHHhcCeEEEEEcCCCccccchHHHH-HHhhhh---cCCcEEEEeccccc
Q 047363 91 VSTAARLSDGALVLVDAVEGVHIQTHAVL-RQSWIE---KLTPCLVLNKIDRL 139 (876)
Q Consensus 91 ~~~al~~aDgaIlVvDa~egv~~~t~~~l-~~~~~~---~ip~ilviNKiD~~ 139 (876)
...+++.+|++|+|+|+.+.........| ...... ++|+++++||+|+.
T Consensus 66 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 118 (159)
T cd00154 66 TPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLE 118 (159)
T ss_pred HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEccccc
Confidence 99999999999999999875433332323 333333 48999999999996
No 148
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.30 E-value=1.2e-11 Score=123.41 Aligned_cols=113 Identities=18% Similarity=0.269 Sum_probs=76.0
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCcc-chH
Q 047363 11 NISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMD-FCS 89 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~d-F~~ 89 (876)
+|+++|++|+|||||+++++.....+. +..... +.....+.+......+++|||||+.. +..
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~----------~~~t~~-------~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 63 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGE----------YDPNLE-------SLYSRQVTIDGEQVSLEILDTAGQQQADTE 63 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccc----------cCCChH-------HhceEEEEECCEEEEEEEEECCCCcccccc
Confidence 489999999999999999975411110 000000 11112233334456789999999995 456
Q ss_pred HHHHHHHhcCeEEEEEcCCCccccchHHHH-HHhh-----hhcCCcEEEEecccccc
Q 047363 90 EVSTAARLSDGALVLVDAVEGVHIQTHAVL-RQSW-----IEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 90 e~~~al~~aDgaIlVvDa~egv~~~t~~~l-~~~~-----~~~ip~ilviNKiD~~~ 140 (876)
.....++.+|++|+|+|+.+..+.+....| ..+. ..++|+++|+||+|+..
T Consensus 64 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 120 (165)
T cd04146 64 QLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLH 120 (165)
T ss_pred hHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHH
Confidence 788899999999999999887655433322 2222 23789999999999854
No 149
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.30 E-value=1.2e-11 Score=116.43 Aligned_cols=107 Identities=24% Similarity=0.255 Sum_probs=77.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccc---
Q 047363 11 NISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDF--- 87 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF--- 87 (876)
.|+|+|.+|+|||||+++|++. ...... + ..+.|.......+.+.+..+.|+||||..+-
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~--~~~~~~---------~------~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~ 63 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGK--KLAKVS---------N------IPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQ 63 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS--TSSEES---------S------STTSSSSEEEEEEEETTEEEEEEESSSCSSSSHH
T ss_pred CEEEECCCCCCHHHHHHHHhcc--cccccc---------c------cccceeeeeeeeeeeceeeEEEEeCCCCcccchh
Confidence 4899999999999999999864 211110 0 1133333333455668888899999997652
Q ss_pred ------hHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEec
Q 047363 88 ------CSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNK 135 (876)
Q Consensus 88 ------~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNK 135 (876)
..++...++.+|++++|+|+.+........+++++. .+.|+++|+||
T Consensus 64 ~~~~~~~~~~~~~~~~~d~ii~vv~~~~~~~~~~~~~~~~l~-~~~~~i~v~NK 116 (116)
T PF01926_consen 64 DNDGKEIRKFLEQISKSDLIIYVVDASNPITEDDKNILRELK-NKKPIILVLNK 116 (116)
T ss_dssp HHHHHHHHHHHHHHCTESEEEEEEETTSHSHHHHHHHHHHHH-TTSEEEEEEES
T ss_pred hHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHh-cCCCEEEEEcC
Confidence 334667778899999999988744555567777775 88999999998
No 150
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.30 E-value=1.1e-11 Score=151.47 Aligned_cols=111 Identities=22% Similarity=0.227 Sum_probs=84.9
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccchH
Q 047363 10 RNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFCS 89 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~~ 89 (876)
.+|+++|++|+|||||+|+|++. ...+ | + ..|.|+......+.++++.++++||||+.+|..
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Ltg~--~~~v-----g-----n------~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~ 65 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLTGA--RQRV-----G-----N------WAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTT 65 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHhCC--CCcc-----C-----C------CCCceEeeEEEEEEcCceEEEEEECCCcccccc
Confidence 68999999999999999999654 2111 1 1 146777777777888899999999999998853
Q ss_pred --------HH--HHHH--HhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccc
Q 047363 90 --------EV--STAA--RLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 90 --------e~--~~al--~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~ 140 (876)
|. ...+ ..+|++|+|+|+.+... ...++.++.+.++|+++|+||+|+..
T Consensus 66 ~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~ler--~l~l~~ql~e~giPvIvVlNK~Dl~~ 126 (772)
T PRK09554 66 ISSQTSLDEQIACHYILSGDADLLINVVDASNLER--NLYLTLQLLELGIPCIVALNMLDIAE 126 (772)
T ss_pred ccccccHHHHHHHHHHhccCCCEEEEEecCCcchh--hHHHHHHHHHcCCCEEEEEEchhhhh
Confidence 21 1222 26899999999987533 34466778888999999999999864
No 151
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.30 E-value=1.3e-11 Score=122.08 Aligned_cols=112 Identities=19% Similarity=0.155 Sum_probs=78.7
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEc--CeEEEEEcCCCCccc
Q 047363 10 RNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYK--DYAINLIDSPGHMDF 87 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~--~~~inlIDTPGh~dF 87 (876)
++|+++|++++|||||+++|+.. .-... ...+.+.......+.++ ...+++|||||+..|
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~--~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~ 62 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYD--TFDNQ----------------YQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERF 62 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcC--CCCcc----------------CCCceeeeEEEEEEEECCEEEEEEEEECCCcHHH
Confidence 47999999999999999999866 21111 01122222222233333 357899999999999
Q ss_pred hHHHHHHHHhcCeEEEEEcCCCccccchHH-HHHHh-hhh--cCCcEEEEeccccc
Q 047363 88 CSEVSTAARLSDGALVLVDAVEGVHIQTHA-VLRQS-WIE--KLTPCLVLNKIDRL 139 (876)
Q Consensus 88 ~~e~~~al~~aDgaIlVvDa~egv~~~t~~-~l~~~-~~~--~ip~ilviNKiD~~ 139 (876)
.......++.+|++|+|+|..+..+..... .+... ... ++|+++++||+|+.
T Consensus 63 ~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~ 118 (161)
T cd01861 63 RSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLS 118 (161)
T ss_pred HHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhcc
Confidence 988999999999999999998765544332 23322 223 48999999999995
No 152
>PRK00089 era GTPase Era; Reviewed
Probab=99.29 E-value=1.1e-11 Score=135.87 Aligned_cols=115 Identities=24% Similarity=0.207 Sum_probs=81.5
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccc
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDF 87 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF 87 (876)
+...|+++|++|+|||||+++|++. .-.+.... +. .|...........+..+.++||||+.+.
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~--~~~~vs~~----------~~-----tt~~~i~~i~~~~~~qi~~iDTPG~~~~ 66 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQ--KISIVSPK----------PQ-----TTRHRIRGIVTEDDAQIIFVDTPGIHKP 66 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCC--ceeecCCC----------CC-----cccccEEEEEEcCCceEEEEECCCCCCc
Confidence 5678999999999999999999865 21111100 00 0111000111224579999999997654
Q ss_pred --------hHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEeccccc
Q 047363 88 --------CSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRL 139 (876)
Q Consensus 88 --------~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~ 139 (876)
...+..++..+|++++|+|+.++.......++..+...++|+++|+||+|+.
T Consensus 67 ~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~ 126 (292)
T PRK00089 67 KRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLV 126 (292)
T ss_pred hhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCC
Confidence 3456678889999999999998766666667777776789999999999997
No 153
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.29 E-value=1.3e-11 Score=126.09 Aligned_cols=112 Identities=25% Similarity=0.199 Sum_probs=79.5
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccc
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDF 87 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF 87 (876)
+-..|+++|+.|+|||||+++|... . ... +. .|+......+.+.+..++++||||+.+|
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~--~--~~~-------~~----------~T~~~~~~~i~~~~~~~~l~D~~G~~~~ 76 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDD--R--LAQ-------HV----------PTLHPTSEELTIGNIKFKTFDLGGHEQA 76 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC--C--Ccc-------cC----------CccCcceEEEEECCEEEEEEECCCCHHH
Confidence 4578899999999999999999754 1 110 00 0111222345567789999999999999
Q ss_pred hHHHHHHHHhcCeEEEEEcCCCccccc-hHHHHHH----hhhhcCCcEEEEecccccc
Q 047363 88 CSEVSTAARLSDGALVLVDAVEGVHIQ-THAVLRQ----SWIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 88 ~~e~~~al~~aDgaIlVvDa~egv~~~-t~~~l~~----~~~~~ip~ilviNKiD~~~ 140 (876)
......+++.+|++|+|+|+.+..... ....+.. ....++|+++|+||+|+..
T Consensus 77 ~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~ 134 (190)
T cd00879 77 RRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG 134 (190)
T ss_pred HHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC
Confidence 888888999999999999998653221 1122222 2235689999999999864
No 154
>PTZ00369 Ras-like protein; Provisional
Probab=99.29 E-value=1.5e-11 Score=126.07 Aligned_cols=115 Identities=14% Similarity=0.156 Sum_probs=79.7
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccch
Q 047363 9 IRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFC 88 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~ 88 (876)
..+|+++|..|+|||||+++++.. . .... +... -+.++ ...+.+....+.++||||||+.+|.
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~--~--~~~~------~~~t------~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~ 67 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQN--H--FIDE------YDPT------IEDSY-RKQCVIDEETCLLDILDTAGQEEYS 67 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC--C--CCcC------cCCc------hhhEE-EEEEEECCEEEEEEEEeCCCCccch
Confidence 468999999999999999999865 1 1100 0000 01111 1223344445778999999999999
Q ss_pred HHHHHHHHhcCeEEEEEcCCCccccchHHHH-HHh----hhhcCCcEEEEecccccc
Q 047363 89 SEVSTAARLSDGALVLVDAVEGVHIQTHAVL-RQS----WIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 89 ~e~~~al~~aDgaIlVvDa~egv~~~t~~~l-~~~----~~~~ip~ilviNKiD~~~ 140 (876)
.....+++.+|++|+|+|+.+..+......| ... ...++|+++|+||+|+..
T Consensus 68 ~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~ 124 (189)
T PTZ00369 68 AMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDS 124 (189)
T ss_pred hhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 9999999999999999999876543332222 222 234789999999999864
No 155
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.29 E-value=9.1e-12 Score=127.06 Aligned_cols=114 Identities=19% Similarity=0.205 Sum_probs=77.7
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEE-EEcCeEEEEEcCCCCccch
Q 047363 10 RNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIAL-HYKDYAINLIDSPGHMDFC 88 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~-~~~~~~inlIDTPGh~dF~ 88 (876)
-.|+++|+.|+|||||++++... ... ... ...|++.....+.. .+....+++|||||+..|.
T Consensus 4 ~kv~~vG~~~~GKTsli~~~~~~--~~~------------~~~---~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~ 66 (183)
T cd04152 4 LHIVMLGLDSAGKTTVLYRLKFN--EFV------------NTV---PTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLR 66 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHhcC--CcC------------CcC---CccccceeEEEeeccCCCceEEEEEECCCcHhHH
Confidence 35899999999999999999755 211 000 01122222111111 2245789999999999998
Q ss_pred HHHHHHHHhcCeEEEEEcCCCccccchH-----HHHHHhhhhcCCcEEEEecccccc
Q 047363 89 SEVSTAARLSDGALVLVDAVEGVHIQTH-----AVLRQSWIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 89 ~e~~~al~~aDgaIlVvDa~egv~~~t~-----~~l~~~~~~~ip~ilviNKiD~~~ 140 (876)
......++.+|++|+|+|+.+....... .++......++|+++|+||+|+..
T Consensus 67 ~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~ 123 (183)
T cd04152 67 PLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPN 123 (183)
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccc
Confidence 8888889999999999999876433221 222333345789999999999863
No 156
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.29 E-value=2.7e-11 Score=121.30 Aligned_cols=116 Identities=16% Similarity=0.169 Sum_probs=79.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccc
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDF 87 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF 87 (876)
...+|+++|.+|+|||||+++++.. . ..... ....|.......+.+......+.||||||+..|
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~--~--~~~~~------------~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~ 67 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTN--K--FDTQL------------FHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERF 67 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcC--C--CCcCc------------CCceeeEEEEEEEEECCeEEEEEEEeCCChHHH
Confidence 4578999999999999999999854 1 11000 001122222222333333467889999999999
Q ss_pred hHHHHHHHHhcCeEEEEEcCCCccccchHHHHHH-----hh---hhcCCcEEEEeccccc
Q 047363 88 CSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQ-----SW---IEKLTPCLVLNKIDRL 139 (876)
Q Consensus 88 ~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~-----~~---~~~ip~ilviNKiD~~ 139 (876)
.......++.+|++|+|+|..+..+.+....|.. +. ..++|+++|+||+|+.
T Consensus 68 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 127 (170)
T cd04116 68 RSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP 127 (170)
T ss_pred HHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc
Confidence 9988999999999999999987654444333322 11 2468999999999986
No 157
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.29 E-value=2e-11 Score=122.19 Aligned_cols=113 Identities=13% Similarity=0.063 Sum_probs=78.5
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccchHH
Q 047363 11 NISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFCSE 90 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~~e 90 (876)
+|+++|+.|+|||||+++|+.....+.. ... ....++ ...+....+.+++|||||+.++...
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~~~~----------~~~-----~~~~~~---~~~~~~~~~~~~i~Dt~G~~~~~~~ 63 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFPENV----------PRV-----LPEITI---PADVTPERVPTTIVDTSSRPQDRAN 63 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCccC----------CCc-----ccceEe---eeeecCCeEEEEEEeCCCchhhhHH
Confidence 6899999999999999999865211100 000 001111 1122234678999999999988888
Q ss_pred HHHHHHhcCeEEEEEcCCCccccchH-HHH-HHhh--hhcCCcEEEEeccccccc
Q 047363 91 VSTAARLSDGALVLVDAVEGVHIQTH-AVL-RQSW--IEKLTPCLVLNKIDRLIS 141 (876)
Q Consensus 91 ~~~al~~aDgaIlVvDa~egv~~~t~-~~l-~~~~--~~~ip~ilviNKiD~~~~ 141 (876)
+...++.+|++++|+|+.+..+.... ..| ..+. ..++|+++|+||+|+...
T Consensus 64 ~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~ 118 (166)
T cd01893 64 LAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDG 118 (166)
T ss_pred HhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccc
Confidence 88889999999999999876665542 223 2232 237899999999999753
No 158
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.28 E-value=3.1e-11 Score=124.89 Aligned_cols=118 Identities=19% Similarity=0.211 Sum_probs=80.6
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCcc
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMD 86 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~d 86 (876)
+...+|+++|..|+|||||+++|+..+..+.. ....|+.+....+.+......++||||||+..
T Consensus 4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~----------------~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~ 67 (199)
T cd04110 4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSY----------------ITTIGVDFKIRTVEINGERVKLQIWDTAGQER 67 (199)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCc----------------CccccceeEEEEEEECCEEEEEEEEeCCCchh
Confidence 34689999999999999999999865111000 00112222222222222235789999999999
Q ss_pred chHHHHHHHHhcCeEEEEEcCCCccccchHHHH-HHhh--hhcCCcEEEEecccccc
Q 047363 87 FCSEVSTAARLSDGALVLVDAVEGVHIQTHAVL-RQSW--IEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 87 F~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l-~~~~--~~~ip~ilviNKiD~~~ 140 (876)
|.......++.+|++|+|+|+.+..+.+...-| .... ...+|+++|+||+|+..
T Consensus 68 ~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~ 124 (199)
T cd04110 68 FRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPE 124 (199)
T ss_pred HHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccccc
Confidence 998899999999999999999876544432222 2222 23579999999999864
No 159
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.28 E-value=1.5e-11 Score=122.76 Aligned_cols=114 Identities=14% Similarity=0.148 Sum_probs=78.7
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccchH
Q 047363 10 RNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFCS 89 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~~ 89 (876)
..|+++|..|+|||||+++++....... +.... +.+ ....+.+......++++||||+.+|..
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~----------~~~t~------~~~-~~~~~~~~~~~~~l~i~Dt~G~~~~~~ 64 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRES----------YIPTI------EDT-YRQVISCSKNICTLQITDTTGSHQFPA 64 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCC----------cCCcc------hhe-EEEEEEECCEEEEEEEEECCCCCcchH
Confidence 3689999999999999999986511100 00000 000 111233334457899999999999998
Q ss_pred HHHHHHHhcCeEEEEEcCCCccccch-HHHHHHhhh------hcCCcEEEEecccccc
Q 047363 90 EVSTAARLSDGALVLVDAVEGVHIQT-HAVLRQSWI------EKLTPCLVLNKIDRLI 140 (876)
Q Consensus 90 e~~~al~~aDgaIlVvDa~egv~~~t-~~~l~~~~~------~~ip~ilviNKiD~~~ 140 (876)
....+++.+|++|+|+|..+..+... ...+....+ .++|+++|+||+|+..
T Consensus 65 ~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 122 (165)
T cd04140 65 MQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESH 122 (165)
T ss_pred HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccc
Confidence 88889999999999999987665443 223333322 4689999999999864
No 160
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.28 E-value=1.6e-11 Score=127.58 Aligned_cols=114 Identities=20% Similarity=0.189 Sum_probs=81.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccchHH
Q 047363 11 NISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFCSE 90 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~~e 90 (876)
.|+++|..|+|||||+.++..... .. ... ..-|..+....+.+....+.++||||+|+..|...
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f----~~----------~~~--~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l 65 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTF----CE----------ACK--SGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSI 65 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCC----CC----------cCC--CcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHH
Confidence 489999999999999999986511 10 000 01122222233333333478899999999999999
Q ss_pred HHHHHHhcCeEEEEEcCCCccccchHHHHHHh-h---hhcCCcEEEEecccccc
Q 047363 91 VSTAARLSDGALVLVDAVEGVHIQTHAVLRQS-W---IEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 91 ~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~-~---~~~ip~ilviNKiD~~~ 140 (876)
....++.+|++|+|+|+.+..+.+...-|... . ..++|+++|.||+|+..
T Consensus 66 ~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~ 119 (202)
T cd04120 66 TSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCET 119 (202)
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccc
Confidence 99999999999999999987766655444332 2 24689999999999853
No 161
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.28 E-value=1.3e-11 Score=123.13 Aligned_cols=100 Identities=23% Similarity=0.206 Sum_probs=71.5
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCC----c
Q 047363 10 RNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGH----M 85 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh----~ 85 (876)
++|+++|++|+|||||+++|.+. .. .. .. ...+.+... ++|||||. .
T Consensus 2 ~~i~~iG~~~~GKstl~~~l~~~--~~-~~----------------------~~--~~~v~~~~~--~~iDtpG~~~~~~ 52 (158)
T PRK15467 2 KRIAFVGAVGAGKTTLFNALQGN--YT-LA----------------------RK--TQAVEFNDK--GDIDTPGEYFSHP 52 (158)
T ss_pred cEEEEECCCCCCHHHHHHHHcCC--Cc-cC----------------------cc--ceEEEECCC--CcccCCccccCCH
Confidence 58999999999999999998643 10 00 00 012222222 37999996 4
Q ss_pred cchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccc
Q 047363 86 DFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 86 dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~ 140 (876)
++..++..+++.+|++|+|+|+.++.+.....++.. ..++|+++++||+|+..
T Consensus 53 ~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~--~~~~~ii~v~nK~Dl~~ 105 (158)
T PRK15467 53 RWYHALITTLQDVDMLIYVHGANDPESRLPAGLLDI--GVSKRQIAVISKTDMPD 105 (158)
T ss_pred HHHHHHHHHHhcCCEEEEEEeCCCcccccCHHHHhc--cCCCCeEEEEEccccCc
Confidence 666777788999999999999998876555444432 24679999999999864
No 162
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.28 E-value=8.1e-11 Score=124.42 Aligned_cols=108 Identities=21% Similarity=0.319 Sum_probs=83.7
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcc-eeeeeeEEEEEEcCeEEEEEcCCCCcc
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRA-ITMKSSSIALHYKDYAINLIDSPGHMD 86 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rg-iti~~~~i~~~~~~~~inlIDTPGh~d 86 (876)
.-+.|+|+|++|+|||||++.|+.......+. ...| +++ ....+..++++||||+.
T Consensus 38 ~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~----------------~~~g~i~i------~~~~~~~i~~vDtPg~~- 94 (225)
T cd01882 38 PPLVVAVVGPPGVGKTTLIKSLVKNYTKQNIS----------------DIKGPITV------VTGKKRRLTFIECPNDI- 94 (225)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcccCccc----------------cccccEEE------EecCCceEEEEeCCchH-
Confidence 34789999999999999999998761111000 1122 221 22357889999999975
Q ss_pred chHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEE-EEecccccc
Q 047363 87 FCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCL-VLNKIDRLI 140 (876)
Q Consensus 87 F~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~il-viNKiD~~~ 140 (876)
..+..+++.+|.+++|+|+.++...++..++..+...++|.++ |+||+|+..
T Consensus 95 --~~~l~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~ 147 (225)
T cd01882 95 --NAMIDIAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLFK 147 (225)
T ss_pred --HHHHHHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccCC
Confidence 6777888999999999999999999999999998888999665 999999874
No 163
>PLN03118 Rab family protein; Provisional
Probab=99.28 E-value=3.6e-11 Score=125.51 Aligned_cols=115 Identities=18% Similarity=0.239 Sum_probs=80.5
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccch
Q 047363 9 IRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFC 88 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~ 88 (876)
-.+|+|+|+.|+|||||+++|+.. . +.. . ...-|.+.....+.+....+.++|+||||+.+|.
T Consensus 14 ~~kv~ivG~~~vGKTsli~~l~~~--~--~~~----------~---~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~ 76 (211)
T PLN03118 14 SFKILLIGDSGVGKSSLLVSFISS--S--VED----------L---APTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFR 76 (211)
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC--C--CCC----------c---CCCceeEEEEEEEEECCEEEEEEEEECCCchhhH
Confidence 468999999999999999999865 2 110 0 0011222222223332234688999999999999
Q ss_pred HHHHHHHHhcCeEEEEEcCCCccccchHH-HHHHhh-----hhcCCcEEEEecccccc
Q 047363 89 SEVSTAARLSDGALVLVDAVEGVHIQTHA-VLRQSW-----IEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 89 ~e~~~al~~aDgaIlVvDa~egv~~~t~~-~l~~~~-----~~~ip~ilviNKiD~~~ 140 (876)
.....+++.+|++|+|+|+.+..+..... .|.... ..++|+++|+||+|+..
T Consensus 77 ~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~ 134 (211)
T PLN03118 77 TLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRES 134 (211)
T ss_pred HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 99999999999999999998765544432 343221 23578999999999864
No 164
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.28 E-value=3.7e-11 Score=123.13 Aligned_cols=121 Identities=16% Similarity=0.151 Sum_probs=81.6
Q ss_pred CCCCCCCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcC
Q 047363 2 GDSDTRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDS 81 (876)
Q Consensus 2 ~~~~~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDT 81 (876)
++..+...++|+++|++|+|||||+++|+.......++. ..|.|....... + +..+.||||
T Consensus 17 ~~~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~----------------~~~~t~~~~~~~--~-~~~l~l~Dt 77 (196)
T PRK00454 17 EQLPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSK----------------TPGRTQLINFFE--V-NDKLRLVDL 77 (196)
T ss_pred hhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccC----------------CCCceeEEEEEe--c-CCeEEEeCC
Confidence 445667889999999999999999999986411111110 112333222222 2 478999999
Q ss_pred CCCc----------cchHHHHHHHHhc---CeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEeccccccc
Q 047363 82 PGHM----------DFCSEVSTAARLS---DGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLIS 141 (876)
Q Consensus 82 PGh~----------dF~~e~~~al~~a---DgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~~ 141 (876)
||+. .|.......++.+ +++++|+|+..+.......+++.+...++|+++++||+|+...
T Consensus 78 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~~~ 150 (196)
T PRK00454 78 PGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKADKLKK 150 (196)
T ss_pred CCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECcccCCH
Confidence 9963 2333334444444 6788899988776665556667777788999999999999743
No 165
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.27 E-value=2.4e-11 Score=125.80 Aligned_cols=117 Identities=25% Similarity=0.236 Sum_probs=75.7
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcC-eEEEEEcCCCCc
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKD-YAINLIDSPGHM 85 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~-~~inlIDTPGh~ 85 (876)
+.+.+|+|+|++|+|||||+++|+.. ...... . .+.|+......+.+.+ +.+.+|||||+.
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~--~~~~~~----~------------~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~ 100 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGA--DVYAED----Q------------LFATLDPTTRRLRLPDGREVLLTDTVGFI 100 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcc--hhccCC----c------------cceeccceeEEEEecCCceEEEeCCCccc
Confidence 34689999999999999999999865 211100 0 0112222223344444 489999999985
Q ss_pred cc-h-------HHHHHHHHhcCeEEEEEcCCCccccchHH----HHHHhhhhcCCcEEEEeccccccc
Q 047363 86 DF-C-------SEVSTAARLSDGALVLVDAVEGVHIQTHA----VLRQSWIEKLTPCLVLNKIDRLIS 141 (876)
Q Consensus 86 dF-~-------~e~~~al~~aDgaIlVvDa~egv~~~t~~----~l~~~~~~~ip~ilviNKiD~~~~ 141 (876)
+. . ......+..+|++++|+|+.++....... .++.+...++|+++|+||+|+...
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~ 168 (204)
T cd01878 101 RDLPHQLVEAFRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDD 168 (204)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCCh
Confidence 42 1 11223467899999999998775544332 233333346899999999999753
No 166
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.27 E-value=1.8e-11 Score=122.33 Aligned_cols=115 Identities=16% Similarity=0.112 Sum_probs=78.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccchH
Q 047363 10 RNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFCS 89 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~~ 89 (876)
.+|+++|..|+|||||+++|+.........+ .-|++.....+........+.+|||||+.+|..
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~----------------t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~ 65 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVS----------------TVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRT 65 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCC----------------ceeeEEEEEEEEECCEEEEEEEEECCChHHHHH
Confidence 4799999999999999999986511111000 112222222222222346799999999999998
Q ss_pred HHHHHHHhcCeEEEEEcCCCccccchHH-HHHHhhh---hcCCcEEEEecccccc
Q 047363 90 EVSTAARLSDGALVLVDAVEGVHIQTHA-VLRQSWI---EKLTPCLVLNKIDRLI 140 (876)
Q Consensus 90 e~~~al~~aDgaIlVvDa~egv~~~t~~-~l~~~~~---~~ip~ilviNKiD~~~ 140 (876)
.....++.+|++|+|+|..+........ .++.+.+ ...|+++|+||+|+..
T Consensus 66 ~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~ 120 (165)
T cd01865 66 ITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMED 120 (165)
T ss_pred HHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCc
Confidence 8999999999999999998654333222 2223322 3578999999999864
No 167
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.27 E-value=1.7e-11 Score=122.99 Aligned_cols=113 Identities=15% Similarity=0.188 Sum_probs=78.0
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccchHH
Q 047363 11 NISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFCSE 90 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~~e 90 (876)
+|+++|..|+|||||+++++.. . .... +. ..-|+.+....+........+.+|||||+.+|...
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~--~--~~~~------~~------~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 65 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTG--E--FEKK------YV------ATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGL 65 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhC--C--CCCC------CC------CceeeEEEEEEEEECCEEEEEEEEECCCChhhccc
Confidence 6899999999999999999855 1 1100 00 01122222211222223578999999999999877
Q ss_pred HHHHHHhcCeEEEEEcCCCccccchHHHH-HHhhh--hcCCcEEEEeccccc
Q 047363 91 VSTAARLSDGALVLVDAVEGVHIQTHAVL-RQSWI--EKLTPCLVLNKIDRL 139 (876)
Q Consensus 91 ~~~al~~aDgaIlVvDa~egv~~~t~~~l-~~~~~--~~ip~ilviNKiD~~ 139 (876)
....++.+|++|+|+|+.++.+.+...-| +.+.. .++|+++|+||+|+.
T Consensus 66 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~ 117 (166)
T cd00877 66 RDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIK 117 (166)
T ss_pred cHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcc
Confidence 78888999999999999987665443323 33322 269999999999997
No 168
>PRK04213 GTP-binding protein; Provisional
Probab=99.27 E-value=2.4e-11 Score=125.41 Aligned_cols=118 Identities=19% Similarity=0.230 Sum_probs=77.0
Q ss_pred CCCCCCCCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEc
Q 047363 1 MGDSDTRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLID 80 (876)
Q Consensus 1 m~~~~~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlID 80 (876)
|-...+.+..+|+++|++|+|||||+++|.+. . .. .....|.|..... +.+. .+++||
T Consensus 1 ~~~~~~~~~~~i~i~G~~~~GKSsLin~l~~~--~--~~--------------~~~~~~~t~~~~~--~~~~--~~~l~D 58 (201)
T PRK04213 1 MFETRPDRKPEIVFVGRSNVGKSTLVRELTGK--K--VR--------------VGKRPGVTRKPNH--YDWG--DFILTD 58 (201)
T ss_pred CCcccCCCCCEEEEECCCCCCHHHHHHHHhCC--C--Cc--------------cCCCCceeeCceE--Eeec--ceEEEe
Confidence 33344556678999999999999999999654 1 10 0012255554332 3333 689999
Q ss_pred CCCCcc-----------chHHHHH----HHHhcCeEEEEEcCCCcc-----------ccchHHHHHHhhhhcCCcEEEEe
Q 047363 81 SPGHMD-----------FCSEVST----AARLSDGALVLVDAVEGV-----------HIQTHAVLRQSWIEKLTPCLVLN 134 (876)
Q Consensus 81 TPGh~d-----------F~~e~~~----al~~aDgaIlVvDa~egv-----------~~~t~~~l~~~~~~~ip~ilviN 134 (876)
|||+.. |...+.. ++..+|++++|+|+.... ...+..++..+...++|+++|+|
T Consensus 59 t~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~N 138 (201)
T PRK04213 59 LPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVN 138 (201)
T ss_pred CCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEE
Confidence 999532 2222222 344568999999986432 12235566666677999999999
Q ss_pred cccccc
Q 047363 135 KIDRLI 140 (876)
Q Consensus 135 KiD~~~ 140 (876)
|+|+..
T Consensus 139 K~Dl~~ 144 (201)
T PRK04213 139 KMDKIK 144 (201)
T ss_pred CccccC
Confidence 999864
No 169
>cd03699 lepA_II lepA_II: This subfamily represents the domain II of LepA, a GTP-binding protein localized in the cytoplasmic membrane. The N-terminal domain of LepA shares regions of homology to translation factors. In terms of interaction with the ribosome, EF-G, EF-Tu and IF2 have all been demonstrated to interact at overlapping sites on the ribosome. Chemical protection studies demonstrate that they all include the universally conserved alpha-sarcin loop as part of their binding site. These data indicate that LepA may bind to this location on the ribosome as well. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=99.27 E-value=2.2e-11 Score=109.00 Aligned_cols=81 Identities=22% Similarity=0.359 Sum_probs=65.3
Q ss_pred eEEEEEEeeeecccccCCCCCCccccccccCCCCCCCCccceEEEEEEEeCccCCCCEEEEeccccCCcchhhhccccce
Q 047363 398 CVAFVSKMFAVPIKMLPQRGSNGEILDNYADKGGNGESEECFLAFARIFSGVLYSGQRVFVLSALYDPLKVESMQKHIQE 477 (876)
Q Consensus 398 lv~~V~K~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iaf~RV~SGtL~~G~~v~vlg~~y~~~~~~~~~~~~~~ 477 (876)
+.++|||+.++++.. .++|+|||||+|++||.|++...+ ++
T Consensus 1 ~~~~Vfk~~~d~~~G--------------------------~i~~~Rv~sG~l~~~~~v~~~~~~-------------~~ 41 (86)
T cd03699 1 LRALIFDSWYDPYRG--------------------------VIALVRVFDGTLKKGDKIRFMSTG-------------KE 41 (86)
T ss_pred CEEEEEEeeccCCCC--------------------------EEEEEEEEcCEEcCCCEEEEecCC-------------Ce
Confidence 468999999887631 489999999999999999775311 24
Q ss_pred eEEeEEEEecCCceeecceeeCCCeEEEe-c---CCceeeccceec
Q 047363 478 AELQSLYLMMGQGLKPVASAKAGNVVAIR-G---LGQQILKSATLS 519 (876)
Q Consensus 478 ~~I~~L~l~~G~~~~~v~~v~AGnIv~I~-G---L~~~i~k~~Tl~ 519 (876)
++|++|++ +|.+..+++++.||||+++. | +++ +..|+||+
T Consensus 42 ~~i~~l~~-~~~~~~~~~~~~aGdI~~v~~g~~~l~~-~~~Gdtl~ 85 (86)
T cd03699 42 YEVEEVGI-FRPEMTPTDELSAGQVGYIIAGIKTVKD-ARVGDTIT 85 (86)
T ss_pred EEEEEEEE-ECCCccCCceECCCCEEEEEccccccCc-cccccEee
Confidence 78999994 58888999999999999996 4 554 56788986
No 170
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.27 E-value=3.9e-11 Score=118.15 Aligned_cols=114 Identities=18% Similarity=0.162 Sum_probs=77.7
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccchHH
Q 047363 11 NISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFCSE 90 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~~e 90 (876)
+|+++|..|+|||||+++|+.. .... ..... -+.+.....+.+......+++|||||+..|...
T Consensus 2 ki~i~G~~~~GKStli~~l~~~--~~~~--~~~~~------------~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 65 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVEN--KFNE--KHEST------------TQASFFQKTVNIGGKRIDLAIWDTAGQERYHAL 65 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhC--CCCC--CcCCc------------cceeEEEEEEEECCEEEEEEEEECCchHHHHHh
Confidence 7999999999999999999865 2110 00000 001111122222233457999999999999888
Q ss_pred HHHHHHhcCeEEEEEcCCCccccchHHHHH----HhhhhcCCcEEEEecccccc
Q 047363 91 VSTAARLSDGALVLVDAVEGVHIQTHAVLR----QSWIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 91 ~~~al~~aDgaIlVvDa~egv~~~t~~~l~----~~~~~~ip~ilviNKiD~~~ 140 (876)
....++.+|++|+|+|..++...+....|. .....++|+++|+||+|+..
T Consensus 66 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~ 119 (162)
T cd04123 66 GPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLER 119 (162)
T ss_pred hHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 888899999999999998776544433332 22223689999999999874
No 171
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.27 E-value=4.2e-11 Score=119.15 Aligned_cols=116 Identities=19% Similarity=0.182 Sum_probs=78.7
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccch
Q 047363 9 IRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFC 88 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~ 88 (876)
..+|+++|.+++|||||+++|+.. .-.... . ..-|.+.....+.+......+.++||||+..|.
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~--~~~~~~-----------~---~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~ 66 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRN--EFNLDS-----------K---STIGVEFATRSIQIDGKTIKAQIWDTAGQERYR 66 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC--CCCCCC-----------C---CccceEEEEEEEEECCEEEEEEEEeCCChHHHH
Confidence 468999999999999999999755 210000 0 011222222223332223578999999999998
Q ss_pred HHHHHHHHhcCeEEEEEcCCCccccchHH-HHHHhhh---hcCCcEEEEecccccc
Q 047363 89 SEVSTAARLSDGALVLVDAVEGVHIQTHA-VLRQSWI---EKLTPCLVLNKIDRLI 140 (876)
Q Consensus 89 ~e~~~al~~aDgaIlVvDa~egv~~~t~~-~l~~~~~---~~ip~ilviNKiD~~~ 140 (876)
......++.+|++|+|+|+.+..+.+... .+..+.+ .++|+++|+||.|+..
T Consensus 67 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~ 122 (165)
T cd01868 67 AITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRH 122 (165)
T ss_pred HHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 88888999999999999998655443322 2222222 3589999999999864
No 172
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.26 E-value=2.2e-11 Score=140.57 Aligned_cols=113 Identities=20% Similarity=0.227 Sum_probs=84.8
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccchH
Q 047363 10 RNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFCS 89 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~~ 89 (876)
.+|+++|++|+|||||+++|++. ...+... ..|.|.......+.++++.+++|||||+.++..
T Consensus 204 ~kVvIvG~~nvGKSSLiN~L~~~--~~aivs~---------------~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~ 266 (442)
T TIGR00450 204 FKLAIVGSPNVGKSSLLNALLKQ--DRAIVSD---------------IKGTTRDVVEGDFELNGILIKLLDTAGIREHAD 266 (442)
T ss_pred CEEEEECCCCCcHHHHHHHHhCC--CCcccCC---------------CCCcEEEEEEEEEEECCEEEEEeeCCCcccchh
Confidence 57999999999999999999865 3222111 124455555556777889999999999877643
Q ss_pred H--------HHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccc
Q 047363 90 E--------VSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 90 e--------~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~ 140 (876)
. ...+++.+|++|+|+|+..+.+.... .+..+...++|+++|+||+|+..
T Consensus 267 ~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~~~~piIlV~NK~Dl~~ 324 (442)
T TIGR00450 267 FVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF-LIIDLNKSKKPFILVLNKIDLKI 324 (442)
T ss_pred HHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH-HHHHHhhCCCCEEEEEECccCCC
Confidence 2 34678899999999999887655444 55556556899999999999864
No 173
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.26 E-value=2.7e-11 Score=121.90 Aligned_cols=111 Identities=18% Similarity=0.136 Sum_probs=78.2
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccch
Q 047363 9 IRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFC 88 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~ 88 (876)
..+|+++|+.|+|||||+.+|... . .. ...+ .-|.++ ..+.+....+++|||||+..|.
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~--~--~~----------~~~~---t~g~~~----~~~~~~~~~~~l~Dt~G~~~~~ 67 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLG--Q--SV----------TTIP---TVGFNV----ETVTYKNVKFNVWDVGGQDKIR 67 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccC--C--Cc----------cccC---Ccccce----EEEEECCEEEEEEECCCCHHHH
Confidence 468999999999999999999643 1 10 0000 012222 1334567899999999999998
Q ss_pred HHHHHHHHhcCeEEEEEcCCCccccch-HHHHHHhh----hhcCCcEEEEecccccc
Q 047363 89 SEVSTAARLSDGALVLVDAVEGVHIQT-HAVLRQSW----IEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 89 ~e~~~al~~aDgaIlVvDa~egv~~~t-~~~l~~~~----~~~ip~ilviNKiD~~~ 140 (876)
.....+++.+|++|+|+|+.+...... ...|.... ..++|++||+||+|+..
T Consensus 68 ~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 124 (168)
T cd04149 68 PLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPD 124 (168)
T ss_pred HHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCcc
Confidence 888889999999999999987533221 22333332 23589999999999864
No 174
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.26 E-value=2.8e-11 Score=118.14 Aligned_cols=109 Identities=19% Similarity=0.212 Sum_probs=76.8
Q ss_pred EEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccchHHH
Q 047363 12 ISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFCSEV 91 (876)
Q Consensus 12 I~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~~e~ 91 (876)
|+++|+.|+|||||+++|... . ... ++.+ |+......+.+....+.++||||+..|....
T Consensus 2 i~i~G~~~~GKssl~~~l~~~--~--~~~---------~~~~-------t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~ 61 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG--Q--FSE---------DTIP-------TVGFNMRKVTKGNVTLKVWDLGGQPRFRSMW 61 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC--C--CCc---------CccC-------CCCcceEEEEECCEEEEEEECCCCHhHHHHH
Confidence 799999999999999999755 1 100 0000 1111112344566889999999999999999
Q ss_pred HHHHHhcCeEEEEEcCCCccccc-hHHHHHHhh----hhcCCcEEEEecccccc
Q 047363 92 STAARLSDGALVLVDAVEGVHIQ-THAVLRQSW----IEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 92 ~~al~~aDgaIlVvDa~egv~~~-t~~~l~~~~----~~~ip~ilviNKiD~~~ 140 (876)
..+++.+|++++|+|+.+..... ....+.... ..++|+++|+||+|...
T Consensus 62 ~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~ 115 (159)
T cd04159 62 ERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPG 115 (159)
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC
Confidence 99999999999999997643322 222233322 24789999999999864
No 175
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=2.5e-11 Score=121.59 Aligned_cols=121 Identities=19% Similarity=0.174 Sum_probs=93.6
Q ss_pred CCCCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCC
Q 047363 5 DTRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGH 84 (876)
Q Consensus 5 ~~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh 84 (876)
.-+....|.++|..|+|||.|+.++... . |.+.. ...-|+.++...+.+..+..++.+|||.|+
T Consensus 5 ~~dylFKiiliGds~VGKtCL~~Rf~~~----~----------f~e~~--~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQ 68 (205)
T KOG0084|consen 5 EYDYLFKIILIGDSGVGKTCLLLRFKDD----T----------FTESY--ISTIGVDFKIRTVELDGKTIKLQIWDTAGQ 68 (205)
T ss_pred ccceEEEEEEECCCCcChhhhhhhhccC----C----------cchhh--cceeeeEEEEEEeeecceEEEEEeeecccc
Confidence 3456788999999999999999988643 1 22221 122366666666666666788999999999
Q ss_pred ccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHH-hh---hhcCCcEEEEeccccccc
Q 047363 85 MDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQ-SW---IEKLTPCLVLNKIDRLIS 141 (876)
Q Consensus 85 ~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~-~~---~~~ip~ilviNKiD~~~~ 141 (876)
.+|...+..++|.|+|+|+|+|.++--+......|-+ +. ..++|.+||.||.|+...
T Consensus 69 ERFrtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~ 129 (205)
T KOG0084|consen 69 ERFRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEK 129 (205)
T ss_pred HHHhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhh
Confidence 9999999999999999999999998777666665543 22 346899999999999864
No 176
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.25 E-value=2.3e-11 Score=120.35 Aligned_cols=114 Identities=15% Similarity=0.169 Sum_probs=76.5
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccchH
Q 047363 10 RNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFCS 89 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~~ 89 (876)
.+|+++|.+|+|||||+++++.. . .......+ .. . . ....+.+......+.||||||+.+|..
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~--~--~~~~~~~t----------~~-~-~-~~~~~~~~~~~~~l~i~Dt~G~~~~~~ 64 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQG--I--FVEKYDPT----------IE-D-S-YRKQIEVDGQQCMLEILDTAGTEQFTA 64 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhC--C--CCcccCCc----------hh-h-h-EEEEEEECCEEEEEEEEECCCccccch
Confidence 47999999999999999999865 1 11100000 00 0 0 011122323346788999999999998
Q ss_pred HHHHHHHhcCeEEEEEcCCCccccchHH-HHHHhh----hhcCCcEEEEecccccc
Q 047363 90 EVSTAARLSDGALVLVDAVEGVHIQTHA-VLRQSW----IEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 90 e~~~al~~aDgaIlVvDa~egv~~~t~~-~l~~~~----~~~ip~ilviNKiD~~~ 140 (876)
.....++.+|++|+|+|..+..+..... .+..+. ..++|+++|+||+|+..
T Consensus 65 ~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 120 (163)
T cd04136 65 MRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLED 120 (163)
T ss_pred HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 8888999999999999998654433222 222332 23689999999999864
No 177
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.25 E-value=5.5e-11 Score=120.19 Aligned_cols=117 Identities=17% Similarity=0.102 Sum_probs=79.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEE----------EcCeEEE
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALH----------YKDYAIN 77 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~----------~~~~~in 77 (876)
...+|+++|..|+|||||++++......+...+ .-|.......+.+. .....+.
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~----------------t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFIT----------------TVGIDFREKRVVYNSSGPGGTLGRGQRIHLQ 66 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCC----------------ccceEEEEEEEEEcCccccccccCCCEEEEE
Confidence 457899999999999999999976522111100 01111111111111 1236789
Q ss_pred EEcCCCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHH-HHhhh----hcCCcEEEEecccccc
Q 047363 78 LIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVL-RQSWI----EKLTPCLVLNKIDRLI 140 (876)
Q Consensus 78 lIDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l-~~~~~----~~ip~ilviNKiD~~~ 140 (876)
||||||+..|.......++.+|++|+|+|+.+..+.+...-| ..... .+.|+++|+||+|+..
T Consensus 67 i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~ 134 (180)
T cd04127 67 LWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLED 134 (180)
T ss_pred EEeCCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchh
Confidence 999999999999999999999999999999875544443323 22222 3678999999999864
No 178
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.25 E-value=2.1e-11 Score=123.38 Aligned_cols=114 Identities=17% Similarity=0.220 Sum_probs=78.6
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccchH
Q 047363 10 RNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFCS 89 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~~ 89 (876)
++|+++|++|+|||||+++|+...+.+.. ...... ..+ ..+.+...++.+.++||||+.+|..
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~----------~~t~~~----~~~---~~~~~~~~~~~~~l~D~~g~~~~~~ 64 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESY----------YPTIEN----TFS---KIIRYKGQDYHLEIVDTAGQDEYSI 64 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcccc----------Ccchhh----hEE---EEEEECCEEEEEEEEECCChHhhHH
Confidence 78999999999999999999865211100 000000 001 1122222346789999999999998
Q ss_pred HHHHHHHhcCeEEEEEcCCCccccchHHH-HHHhh----hhcCCcEEEEecccccc
Q 047363 90 EVSTAARLSDGALVLVDAVEGVHIQTHAV-LRQSW----IEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 90 e~~~al~~aDgaIlVvDa~egv~~~t~~~-l~~~~----~~~ip~ilviNKiD~~~ 140 (876)
....++..+|++|+|+|..+....+.... +.... ..++|+++|+||+|+..
T Consensus 65 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 120 (180)
T cd04137 65 LPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHT 120 (180)
T ss_pred HHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhh
Confidence 88899999999999999998765544332 23322 34679999999999864
No 179
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.25 E-value=2.5e-11 Score=117.61 Aligned_cols=111 Identities=22% Similarity=0.186 Sum_probs=81.5
Q ss_pred EEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEc-CeEEEEEcCCCCccch----
Q 047363 14 ILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYK-DYAINLIDSPGHMDFC---- 88 (876)
Q Consensus 14 IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~-~~~inlIDTPGh~dF~---- 88 (876)
|+|+.|+|||||+++|++. ..... ...++.+.......+.+. ...+.++||||+.++.
T Consensus 1 i~G~~gsGKstl~~~l~~~--~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~ 63 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQ--EVAIV---------------SPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGR 63 (163)
T ss_pred CcCCCCCCHHHHHHHHhCc--ccccc---------------CCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchh
Confidence 5899999999999999765 21110 011223333333344444 6799999999988874
Q ss_pred ---HHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEeccccccc
Q 047363 89 ---SEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLIS 141 (876)
Q Consensus 89 ---~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~~ 141 (876)
......++.+|++++|+|+..........++......++|+++|+||+|+...
T Consensus 64 ~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~ 119 (163)
T cd00880 64 EREELARRVLERADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPE 119 (163)
T ss_pred hHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCCh
Confidence 35566889999999999999887766665566677789999999999998753
No 180
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.25 E-value=2.1e-11 Score=120.52 Aligned_cols=113 Identities=18% Similarity=0.211 Sum_probs=77.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccchHH
Q 047363 11 NISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFCSE 90 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~~e 90 (876)
+|+++|.+|+|||||+++|+..... ....+.. .+ .. .....+....+.+.++||||+.+|...
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~~----~~~~~~~--~~----------~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~ 64 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEFV----EDYEPTK--AD----------SY-RKKVVLDGEDVQLNILDTAGQEDYAAI 64 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCc----cccCCcc--hh----------hE-EEEEEECCEEEEEEEEECCChhhhhHH
Confidence 7999999999999999999865111 1000000 00 00 111223334578999999999999999
Q ss_pred HHHHHHhcCeEEEEEcCCCccccc-----hHHHHHHhhhhcCCcEEEEecccccc
Q 047363 91 VSTAARLSDGALVLVDAVEGVHIQ-----THAVLRQSWIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 91 ~~~al~~aDgaIlVvDa~egv~~~-----t~~~l~~~~~~~ip~ilviNKiD~~~ 140 (876)
...+++.+|++++|+|..+..+.. ...+++.....++|+++|+||+|+..
T Consensus 65 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~ 119 (164)
T cd04139 65 RDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLED 119 (164)
T ss_pred HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEcccccc
Confidence 999999999999999987643221 12222222235799999999999875
No 181
>PLN03110 Rab GTPase; Provisional
Probab=99.24 E-value=3.7e-11 Score=126.11 Aligned_cols=121 Identities=14% Similarity=0.141 Sum_probs=84.1
Q ss_pred CCCCCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCC
Q 047363 4 SDTRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPG 83 (876)
Q Consensus 4 ~~~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPG 83 (876)
+..+...+|+++|+.|+|||||+++|+.. .-... + ...-|++.....+.+......++||||||
T Consensus 7 ~~~~~~~Ki~ivG~~~vGKStLi~~l~~~--~~~~~-----------~---~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G 70 (216)
T PLN03110 7 HEYDYLFKIVLIGDSGVGKSNILSRFTRN--EFCLE-----------S---KSTIGVEFATRTLQVEGKTVKAQIWDTAG 70 (216)
T ss_pred cccCceeEEEEECCCCCCHHHHHHHHhcC--CCCCC-----------C---CCceeEEEEEEEEEECCEEEEEEEEECCC
Confidence 34456789999999999999999999765 11000 0 01113333233333333346899999999
Q ss_pred CccchHHHHHHHHhcCeEEEEEcCCCccccchHHHH-HHhh---hhcCCcEEEEecccccc
Q 047363 84 HMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVL-RQSW---IEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 84 h~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l-~~~~---~~~ip~ilviNKiD~~~ 140 (876)
+..|.......++.+|++|+|+|..+....+...-| ..+. ..++|+++|+||+|+..
T Consensus 71 ~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~ 131 (216)
T PLN03110 71 QERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNH 131 (216)
T ss_pred cHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhccc
Confidence 999999999999999999999999876554433323 3332 24789999999999853
No 182
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.24 E-value=2.5e-11 Score=140.80 Aligned_cols=112 Identities=21% Similarity=0.247 Sum_probs=83.0
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccchH
Q 047363 10 RNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFCS 89 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~~ 89 (876)
.+|+++|++|+|||||+++|++. ...+... ..|.|.......+.+.++.++++||||+.++..
T Consensus 216 ~kV~ivG~~nvGKSSLln~L~~~--~~a~v~~---------------~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~ 278 (449)
T PRK05291 216 LKVVIAGRPNVGKSSLLNALLGE--ERAIVTD---------------IAGTTRDVIEEHINLDGIPLRLIDTAGIRETDD 278 (449)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC--CCcccCC---------------CCCcccccEEEEEEECCeEEEEEeCCCCCCCcc
Confidence 57999999999999999999865 2211111 123344444455667788999999999987643
Q ss_pred H--------HHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccc
Q 047363 90 E--------VSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 90 e--------~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~ 140 (876)
. +...++.+|++|+|+|+.++.......+|.. ..++|+++|+||+|+..
T Consensus 279 ~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~--~~~~piiiV~NK~DL~~ 335 (449)
T PRK05291 279 EVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE--LKDKPVIVVLNKADLTG 335 (449)
T ss_pred HHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh--cCCCCcEEEEEhhhccc
Confidence 2 3456888999999999998776655555655 45789999999999964
No 183
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.24 E-value=2.1e-11 Score=123.42 Aligned_cols=131 Identities=19% Similarity=0.247 Sum_probs=81.6
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEE---cCeEEEEEcCCCCc
Q 047363 9 IRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHY---KDYAINLIDSPGHM 85 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~---~~~~inlIDTPGh~ 85 (876)
-+.|.|+|+.|+|||+|..+|.+..+..... ++.. .+.+.. .+..+.+||+|||.
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~t---------------------S~e~-n~~~~~~~~~~~~~~lvD~PGH~ 60 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVT---------------------SMEN-NIAYNVNNSKGKKLRLVDIPGHP 60 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B------------------------SSE-EEECCGSSTCGTCECEEEETT-H
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCeec---------------------cccC-CceEEeecCCCCEEEEEECCCcH
Confidence 4689999999999999999998762111111 2211 112222 24678999999999
Q ss_pred cchHHHHHH---HHhcCeEEEEEcCCCcc---ccchHHH---HHHh--hhhcCCcEEEEecccccccccccChHHHHHHH
Q 047363 86 DFCSEVSTA---ARLSDGALVLVDAVEGV---HIQTHAV---LRQS--WIEKLTPCLVLNKIDRLISELKLTPLEAYNRL 154 (876)
Q Consensus 86 dF~~e~~~a---l~~aDgaIlVvDa~egv---~~~t~~~---l~~~--~~~~ip~ilviNKiD~~~~e~~~~~~~~~~~l 154 (876)
.+....... +..+-|+|+|||++.-. ....+.+ +... ...++|+++++||.|+..+ .++..+...|
T Consensus 61 rlr~~~~~~~~~~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A---~~~~~Ik~~L 137 (181)
T PF09439_consen 61 RLRSKLLDELKYLSNAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA---KPPKKIKKLL 137 (181)
T ss_dssp CCCHHHHHHHHHHGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT------HHHHHHHH
T ss_pred HHHHHHHHhhhchhhCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc---CCHHHHHHHH
Confidence 998877776 88999999999997421 1111222 2222 2457889999999999875 3577788888
Q ss_pred HHHHHHhhhh
Q 047363 155 LRIVHEVNGI 164 (876)
Q Consensus 155 ~~~l~~vn~~ 164 (876)
++-|+.++..
T Consensus 138 E~Ei~~lr~t 147 (181)
T PF09439_consen 138 EKEIDKLRKT 147 (181)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 8877766543
No 184
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.24 E-value=4.1e-11 Score=121.07 Aligned_cols=114 Identities=17% Similarity=0.229 Sum_probs=79.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccchH
Q 047363 10 RNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFCS 89 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~~ 89 (876)
-+|+++|..|+|||||+.+++.........+ + -+.... ..+.+....+.++||||||..+|..
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~------t----------~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~ 65 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSFPDYHDP------T----------IEDAYK-QQARIDNEPALLDILDTAGQAEFTA 65 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcCC------c----------ccceEE-EEEEECCEEEEEEEEeCCCchhhHH
Confidence 4699999999999999999986511110000 0 011111 1122222346789999999999999
Q ss_pred HHHHHHHhcCeEEEEEcCCCccccchHHHH-HHh----hhhcCCcEEEEecccccc
Q 047363 90 EVSTAARLSDGALVLVDAVEGVHIQTHAVL-RQS----WIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 90 e~~~al~~aDgaIlVvDa~egv~~~t~~~l-~~~----~~~~ip~ilviNKiD~~~ 140 (876)
....+++.+|++|+|+|+.+..+.....-| ... ...++|+++|+||+|+..
T Consensus 66 l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~ 121 (172)
T cd04141 66 MRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLES 121 (172)
T ss_pred HhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhh
Confidence 999999999999999999987766654322 222 234689999999999864
No 185
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.24 E-value=5.6e-11 Score=119.07 Aligned_cols=113 Identities=16% Similarity=0.187 Sum_probs=77.0
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccchHH
Q 047363 11 NISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFCSE 90 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~~e 90 (876)
+|+++|.+|+|||||+++|... . ..... +.. -+... ...+.+......+.+|||||+.+|...
T Consensus 3 ki~liG~~~~GKTsli~~~~~~--~--~~~~~-------~~t-----~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 65 (168)
T cd04177 3 KIVVLGAGGVGKSALTVQFVQN--V--FIESY-------DPT-----IEDSY-RKQVEIDGRQCDLEILDTAGTEQFTAM 65 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhC--C--CCccc-------CCc-----chheE-EEEEEECCEEEEEEEEeCCCcccchhh
Confidence 6899999999999999999855 2 11000 000 00010 111222223467899999999999999
Q ss_pred HHHHHHhcCeEEEEEcCCCccccchHHHH-----HHhhhhcCCcEEEEecccccc
Q 047363 91 VSTAARLSDGALVLVDAVEGVHIQTHAVL-----RQSWIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 91 ~~~al~~aDgaIlVvDa~egv~~~t~~~l-----~~~~~~~ip~ilviNKiD~~~ 140 (876)
....++.+|++|+|+|..+....+...-| +.....++|+++++||+|+..
T Consensus 66 ~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~ 120 (168)
T cd04177 66 RELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLED 120 (168)
T ss_pred hHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccc
Confidence 99999999999999999875443332222 222245789999999999864
No 186
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.24 E-value=5.7e-11 Score=119.79 Aligned_cols=114 Identities=15% Similarity=0.168 Sum_probs=76.4
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccchHH
Q 047363 11 NISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFCSE 90 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~~e 90 (876)
.|+++|..|+|||||+++++.........+ .-|.......+.+......++||||||+.+|...
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~----------------t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 65 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKA----------------TIGVDFEMERFEILGVPFSLQLWDTAGQERFKCI 65 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCC----------------ceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhh
Confidence 589999999999999999986522111100 0111222222222222467999999999999998
Q ss_pred HHHHHHhcCeEEEEEcCCCccccchHHHHH-Hhhhh----cCCcEEEEecccccc
Q 047363 91 VSTAARLSDGALVLVDAVEGVHIQTHAVLR-QSWIE----KLTPCLVLNKIDRLI 140 (876)
Q Consensus 91 ~~~al~~aDgaIlVvDa~egv~~~t~~~l~-~~~~~----~ip~ilviNKiD~~~ 140 (876)
....++.+|++|+|+|+.+........-|. ...+. ..|+++|.||+|+..
T Consensus 66 ~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~ 120 (170)
T cd04108 66 ASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSS 120 (170)
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCc
Confidence 999999999999999997644433333332 33332 245789999999853
No 187
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.24 E-value=2.9e-11 Score=120.09 Aligned_cols=113 Identities=20% Similarity=0.224 Sum_probs=76.5
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccchHH
Q 047363 11 NISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFCSE 90 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~~e 90 (876)
+|+++|.+|+|||||+.+++.. ...... +... . . .....+.+......+.||||||+..|...
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~~----~~~~~~-------~~t~--~--~--~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 65 (163)
T cd04176 3 KVVVLGSGGVGKSALTVQFVSG----TFIEKY-------DPTI--E--D--FYRKEIEVDSSPSVLEILDTAGTEQFASM 65 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcC----CCCCCC-------CCch--h--h--eEEEEEEECCEEEEEEEEECCCcccccch
Confidence 6999999999999999999854 111100 0000 0 0 11112233223456889999999999988
Q ss_pred HHHHHHhcCeEEEEEcCCCccccchHH-HHHHhhh----hcCCcEEEEecccccc
Q 047363 91 VSTAARLSDGALVLVDAVEGVHIQTHA-VLRQSWI----EKLTPCLVLNKIDRLI 140 (876)
Q Consensus 91 ~~~al~~aDgaIlVvDa~egv~~~t~~-~l~~~~~----~~ip~ilviNKiD~~~ 140 (876)
....++.+|++|+|+|..+..+.+... .+....+ .++|+++|+||+|+..
T Consensus 66 ~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~ 120 (163)
T cd04176 66 RDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLES 120 (163)
T ss_pred HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchh
Confidence 888999999999999998765433322 2222222 4789999999999853
No 188
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.23 E-value=4.3e-11 Score=119.09 Aligned_cols=113 Identities=14% Similarity=0.183 Sum_probs=76.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccchHH
Q 047363 11 NISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFCSE 90 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~~e 90 (876)
+|+++|..|+|||||+++++.. .........+ +.++ ...+.+....+.+++|||||+..|...
T Consensus 3 ki~~~G~~~~GKTsli~~~~~~----~~~~~~~~t~------------~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 65 (164)
T cd04175 3 KLVVLGSGGVGKSALTVQFVQG----IFVEKYDPTI------------EDSY-RKQVEVDGQQCMLEILDTAGTEQFTAM 65 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC----CCCcccCCcc------------hheE-EEEEEECCEEEEEEEEECCCcccchhH
Confidence 6899999999999999999844 1111100000 0111 111222223567889999999999999
Q ss_pred HHHHHHhcCeEEEEEcCCCccccchH-HHHHHh----hhhcCCcEEEEecccccc
Q 047363 91 VSTAARLSDGALVLVDAVEGVHIQTH-AVLRQS----WIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 91 ~~~al~~aDgaIlVvDa~egv~~~t~-~~l~~~----~~~~ip~ilviNKiD~~~ 140 (876)
....++.+|++|+|+|..+..+.... ..+... ...++|+++|+||+|+..
T Consensus 66 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 120 (164)
T cd04175 66 RDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 120 (164)
T ss_pred HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchh
Confidence 99999999999999998765543322 222222 235689999999999864
No 189
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.23 E-value=2e-11 Score=118.59 Aligned_cols=98 Identities=23% Similarity=0.220 Sum_probs=68.8
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCc----
Q 047363 10 RNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHM---- 85 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~---- 85 (876)
++|+++|++|+|||||+++|+.. .- .+ ..| +.+.+.. .+|||||..
T Consensus 1 ~kv~liG~~~vGKSsL~~~l~~~--~~----------~~----------~~t-----~~~~~~~---~~iDt~G~~~~~~ 50 (142)
T TIGR02528 1 KRIMFIGSVGCGKTTLTQALQGE--EI----------LY----------KKT-----QAVEYND---GAIDTPGEYVENR 50 (142)
T ss_pred CeEEEECCCCCCHHHHHHHHcCC--cc----------cc----------ccc-----eeEEEcC---eeecCchhhhhhH
Confidence 37999999999999999999654 10 00 001 1223332 789999973
Q ss_pred cchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccc
Q 047363 86 DFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 86 dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~ 140 (876)
.+...+..+++.+|++|+|+|+.++.+.+...++.. .+.|+++|+||+|+..
T Consensus 51 ~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~---~~~p~ilv~NK~Dl~~ 102 (142)
T TIGR02528 51 RLYSALIVTAADADVIALVQSATDPESRFPPGFASI---FVKPVIGLVTKIDLAE 102 (142)
T ss_pred HHHHHHHHHhhcCCEEEEEecCCCCCcCCChhHHHh---ccCCeEEEEEeeccCC
Confidence 333344456899999999999998887766544332 2359999999999863
No 190
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.23 E-value=7.7e-11 Score=117.38 Aligned_cols=109 Identities=17% Similarity=0.175 Sum_probs=76.2
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccchHH
Q 047363 11 NISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFCSE 90 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~~e 90 (876)
+|+++|+.++|||||+.+|... . .. .+.+ .-|..+ ..+.+....+++|||||+..|...
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~--~--~~----------~~~p---t~g~~~----~~~~~~~~~~~l~D~~G~~~~~~~ 60 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLG--E--IV----------TTIP---TIGFNV----ETVEYKNISFTVWDVGGQDKIRPL 60 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcC--C--Cc----------ccCC---CCCcce----EEEEECCEEEEEEECCCCHhHHHH
Confidence 5899999999999999999643 1 10 1101 112222 234456789999999999999888
Q ss_pred HHHHHHhcCeEEEEEcCCCccccc-hHHHHHHhh----hhcCCcEEEEecccccc
Q 047363 91 VSTAARLSDGALVLVDAVEGVHIQ-THAVLRQSW----IEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 91 ~~~al~~aDgaIlVvDa~egv~~~-t~~~l~~~~----~~~ip~ilviNKiD~~~ 140 (876)
...+++.+|++|+|+|+.+..... ....|.... ..+.|++|++||+|+..
T Consensus 61 ~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 115 (159)
T cd04150 61 WRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPN 115 (159)
T ss_pred HHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCC
Confidence 888999999999999997643221 122233322 13589999999999864
No 191
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.23 E-value=6.6e-11 Score=120.72 Aligned_cols=112 Identities=16% Similarity=0.139 Sum_probs=79.6
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccc
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDF 87 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF 87 (876)
+..+|+++|..++|||||+.+|... . .. .. ....|.++ ..+.+.+..++++||||+..|
T Consensus 16 ~~~ki~ivG~~~~GKTsl~~~l~~~--~--~~----------~~---~pt~g~~~----~~~~~~~~~~~i~D~~Gq~~~ 74 (181)
T PLN00223 16 KEMRILMVGLDAAGKTTILYKLKLG--E--IV----------TT---IPTIGFNV----ETVEYKNISFTVWDVGGQDKI 74 (181)
T ss_pred CccEEEEECCCCCCHHHHHHHHccC--C--Cc----------cc---cCCcceeE----EEEEECCEEEEEEECCCCHHH
Confidence 3468999999999999999999643 1 10 00 01113332 245567889999999999999
Q ss_pred hHHHHHHHHhcCeEEEEEcCCCccccch-HHHHHHhh----hhcCCcEEEEecccccc
Q 047363 88 CSEVSTAARLSDGALVLVDAVEGVHIQT-HAVLRQSW----IEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 88 ~~e~~~al~~aDgaIlVvDa~egv~~~t-~~~l~~~~----~~~ip~ilviNKiD~~~ 140 (876)
.......++.+|++|+|+|+.+...... ...+.... ..++|++||+||+|+..
T Consensus 75 ~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~ 132 (181)
T PLN00223 75 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
T ss_pred HHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCC
Confidence 8888889999999999999986543222 22222221 13689999999999865
No 192
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.23 E-value=5e-11 Score=119.79 Aligned_cols=109 Identities=16% Similarity=0.149 Sum_probs=76.7
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccchHH
Q 047363 11 NISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFCSE 90 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~~e 90 (876)
+|+++|..++|||||+++|... . .. .+.+ ..|..+ ..+.+.+..++++||||+.+|...
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~--~--~~----------~~~~---T~~~~~----~~~~~~~~~i~l~Dt~G~~~~~~~ 59 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQD--E--FM----------QPIP---TIGFNV----ETVEYKNLKFTIWDVGGKHKLRPL 59 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcC--C--CC----------CcCC---cCceeE----EEEEECCEEEEEEECCCChhcchH
Confidence 4789999999999999999754 1 10 0000 112222 245567899999999999999888
Q ss_pred HHHHHHhcCeEEEEEcCCCccccch-HHHHHHhh----hhcCCcEEEEecccccc
Q 047363 91 VSTAARLSDGALVLVDAVEGVHIQT-HAVLRQSW----IEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 91 ~~~al~~aDgaIlVvDa~egv~~~t-~~~l~~~~----~~~ip~ilviNKiD~~~ 140 (876)
....++.+|++|+|+|+.+...... ...+.... ..+.|+++|+||+|+..
T Consensus 60 ~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 114 (169)
T cd04158 60 WKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG 114 (169)
T ss_pred HHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc
Confidence 8899999999999999986432211 22222222 23479999999999863
No 193
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.22 E-value=1.1e-10 Score=120.11 Aligned_cols=119 Identities=16% Similarity=0.203 Sum_probs=83.8
Q ss_pred CCCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCc
Q 047363 6 TRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHM 85 (876)
Q Consensus 6 ~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~ 85 (876)
.+...+|+++|..++|||||+.++....+. . .. +..-|.......+.+....+.++||||||+.
T Consensus 3 ~~~~~KivviG~~~vGKTsll~~~~~~~~~----~----------~~--~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~ 66 (189)
T cd04121 3 YDYLLKFLLVGDSDVGKGEILASLQDGSTE----S----------PY--GYNMGIDYKTTTILLDGRRVKLQLWDTSGQG 66 (189)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCC----C----------CC--CCcceeEEEEEEEEECCEEEEEEEEeCCCcH
Confidence 345688999999999999999999754110 0 00 0011233333333333334789999999999
Q ss_pred cchHHHHHHHHhcCeEEEEEcCCCccccchHHHH-HHhhh--hcCCcEEEEecccccc
Q 047363 86 DFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVL-RQSWI--EKLTPCLVLNKIDRLI 140 (876)
Q Consensus 86 dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l-~~~~~--~~ip~ilviNKiD~~~ 140 (876)
+|.......++.+|++|+|+|..+..+.....-| .++.+ .++|+|||.||+|+..
T Consensus 67 ~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~ 124 (189)
T cd04121 67 RFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAF 124 (189)
T ss_pred HHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchh
Confidence 9998888899999999999999876655544433 23322 4689999999999864
No 194
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.21 E-value=7.6e-11 Score=115.87 Aligned_cols=113 Identities=16% Similarity=0.227 Sum_probs=76.4
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccchHH
Q 047363 11 NISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFCSE 90 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~~e 90 (876)
+|+|+|+.|+|||||+++|+.. . ..... .+... ........+....+.++++||||+.++...
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~--~--~~~~~---------~~~~~----~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~ 63 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKG--T--FVEEY---------DPTIE----DSYRKTIVVDGETYTLDILDTAGQEEFSAM 63 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhC--C--CCcCc---------CCChh----HeEEEEEEECCEEEEEEEEECCChHHHHHH
Confidence 5899999999999999999865 2 11100 00000 011111122222478999999999999999
Q ss_pred HHHHHHhcCeEEEEEcCCCccccch-HHHHHHhh----hhcCCcEEEEecccccc
Q 047363 91 VSTAARLSDGALVLVDAVEGVHIQT-HAVLRQSW----IEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 91 ~~~al~~aDgaIlVvDa~egv~~~t-~~~l~~~~----~~~ip~ilviNKiD~~~ 140 (876)
....++.+|++++|+|..+...... ...+.... ..++|+++|+||+|+..
T Consensus 64 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 118 (160)
T cd00876 64 RDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLEN 118 (160)
T ss_pred HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccc
Confidence 9999999999999999876543222 22333322 24789999999999975
No 195
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.21 E-value=4.5e-11 Score=119.86 Aligned_cols=113 Identities=15% Similarity=0.214 Sum_probs=79.9
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCcc
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMD 86 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~d 86 (876)
.+-.+|+|+|+.|+|||||+++|.+. . ... + ....|+++ ..+.+.+..+.++||||+..
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~--~--~~~-------~------~~t~g~~~----~~i~~~~~~~~~~D~~G~~~ 70 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASE--D--ISH-------I------TPTQGFNI----KTVQSDGFKLNVWDIGGQRA 70 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcC--C--Ccc-------c------CCCCCcce----EEEEECCEEEEEEECCCCHH
Confidence 34577999999999999999999754 1 000 0 00123322 23445678999999999999
Q ss_pred chHHHHHHHHhcCeEEEEEcCCCccccc-hH----HHHHHhhhhcCCcEEEEecccccc
Q 047363 87 FCSEVSTAARLSDGALVLVDAVEGVHIQ-TH----AVLRQSWIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 87 F~~e~~~al~~aDgaIlVvDa~egv~~~-t~----~~l~~~~~~~ip~ilviNKiD~~~ 140 (876)
|...+...++.+|++++|+|+.+..... .. .+++.....++|+++++||+|+..
T Consensus 71 ~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 129 (173)
T cd04155 71 IRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLAT 129 (173)
T ss_pred HHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCcc
Confidence 9888888999999999999998643221 11 122222345789999999999865
No 196
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.21 E-value=5.3e-11 Score=125.24 Aligned_cols=118 Identities=14% Similarity=0.103 Sum_probs=81.9
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCcc
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMD 86 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~d 86 (876)
....+|+++|..|+|||||+.+++........ ...-|.++....+........+++|||||+.+
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~----------------~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 74 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKY----------------EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCcc----------------CCccceeEEEEEEEECCeEEEEEEEECCCchh
Confidence 34568999999999999999998755111000 01113333222222222357899999999999
Q ss_pred chHHHHHHHHhcCeEEEEEcCCCccccchHHHHHH-hh--hhcCCcEEEEecccccc
Q 047363 87 FCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQ-SW--IEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 87 F~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~-~~--~~~ip~ilviNKiD~~~ 140 (876)
|.......++.+|++|+|+|..+..+.+...-|.. +. ..++|++||+||+|+..
T Consensus 75 ~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~ 131 (219)
T PLN03071 75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (219)
T ss_pred hhhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhh
Confidence 98878888999999999999998766554443322 21 24689999999999853
No 197
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.21 E-value=4.3e-11 Score=118.31 Aligned_cols=110 Identities=19% Similarity=0.222 Sum_probs=75.5
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccchHH
Q 047363 11 NISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFCSE 90 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~~e 90 (876)
.|+++|.+|+|||||+++|... .- .. .. ...|.++. .+.+ ...+.++++||||+..|...
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~--~~-~~-----------~~---~t~~~~~~--~~~~-~~~~~l~i~D~~G~~~~~~~ 60 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHA--EL-VT-----------TI---PTVGFNVE--MLQL-EKHLSLTVWDVGGQEKMRTV 60 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcC--Cc-cc-----------cc---CccCcceE--EEEe-CCceEEEEEECCCCHhHHHH
Confidence 3789999999999999999865 21 00 00 01122221 1221 13578999999999999888
Q ss_pred HHHHHHhcCeEEEEEcCCCccccch-HHHHHHh----hhhcCCcEEEEecccccc
Q 047363 91 VSTAARLSDGALVLVDAVEGVHIQT-HAVLRQS----WIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 91 ~~~al~~aDgaIlVvDa~egv~~~t-~~~l~~~----~~~~ip~ilviNKiD~~~ 140 (876)
+...++.+|++|+|+|+.+...... ...+... ...++|+++|+||+|+..
T Consensus 61 ~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 115 (160)
T cd04156 61 WKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPG 115 (160)
T ss_pred HHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECccccc
Confidence 8888999999999999987642221 1122222 125789999999999863
No 198
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.21 E-value=3.6e-11 Score=119.98 Aligned_cols=114 Identities=15% Similarity=0.071 Sum_probs=75.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccchHH
Q 047363 11 NISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFCSE 90 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~~e 90 (876)
+|+++|..|+|||||+++|+......... .. ..........+....+.+.+|||||+.+|...
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~~~~~~~~----~~-------------~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~ 64 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGKFPTEYV----PT-------------VFDNYSATVTVDGKQVNLGLWDTAGQEEYDRL 64 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCC----Cc-------------eeeeeEEEEEECCEEEEEEEEeCCCccccccc
Confidence 68999999999999999998761100000 00 00001111222334578999999999998766
Q ss_pred HHHHHHhcCeEEEEEcCCCccccchH-H-HHHHhhh--hcCCcEEEEeccccccc
Q 047363 91 VSTAARLSDGALVLVDAVEGVHIQTH-A-VLRQSWI--EKLTPCLVLNKIDRLIS 141 (876)
Q Consensus 91 ~~~al~~aDgaIlVvDa~egv~~~t~-~-~l~~~~~--~~ip~ilviNKiD~~~~ 141 (876)
....++.+|++++|+|+.+..+.... . .+..... .++|+++|+||+|+...
T Consensus 65 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 119 (171)
T cd00157 65 RPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDD 119 (171)
T ss_pred chhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhc
Confidence 66777899999999999875443322 2 2222222 35899999999998754
No 199
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.21 E-value=4.4e-11 Score=122.79 Aligned_cols=115 Identities=19% Similarity=0.181 Sum_probs=77.1
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccchHH
Q 047363 11 NISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFCSE 90 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~~e 90 (876)
+|+++|..|+|||||+++|... .-.... +.. ..+.+.....+.+......++||||||+.+|...
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~--~~~~~~-------~~~------t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 66 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDG--AFLNGN-------FIA------TVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSV 66 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcC--CCCccC-------cCC------cccceeEEEEEEECCEEEEEEEEeCCCcHHHHHh
Confidence 6899999999999999999765 211100 000 0112222222333333468999999999999888
Q ss_pred HHHHHHhcCeEEEEEcCCCccccchHH-HHHHhh---hhcCCcEEEEecccccc
Q 047363 91 VSTAARLSDGALVLVDAVEGVHIQTHA-VLRQSW---IEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 91 ~~~al~~aDgaIlVvDa~egv~~~t~~-~l~~~~---~~~ip~ilviNKiD~~~ 140 (876)
....++.+|++|+|+|+....+..... .+..+. ..++|+++|+||+|+..
T Consensus 67 ~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~ 120 (191)
T cd04112 67 THAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSG 120 (191)
T ss_pred hHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchh
Confidence 888999999999999998754433222 222222 24689999999999864
No 200
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.21 E-value=4.5e-11 Score=122.66 Aligned_cols=113 Identities=13% Similarity=0.177 Sum_probs=75.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccchHH
Q 047363 11 NISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFCSE 90 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~~e 90 (876)
.|+++|..|+|||||+++|... . ........ . +... ...+.+....+.+.||||||+.+|...
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~--~--f~~~~~~t--~----------~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 63 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLN--H--FVETYDPT--I----------EDSY-RKQVVVDGQPCMLEVLDTAGQEEYTAL 63 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhC--C--CCccCCCc--h----------HhhE-EEEEEECCEEEEEEEEECCCchhhHHH
Confidence 3899999999999999999854 1 11000000 0 0011 011222222356899999999999998
Q ss_pred HHHHHHhcCeEEEEEcCCCccccchH-HHHHHhhh------hcCCcEEEEecccccc
Q 047363 91 VSTAARLSDGALVLVDAVEGVHIQTH-AVLRQSWI------EKLTPCLVLNKIDRLI 140 (876)
Q Consensus 91 ~~~al~~aDgaIlVvDa~egv~~~t~-~~l~~~~~------~~ip~ilviNKiD~~~ 140 (876)
...+++.+|++|+|+|..+..+.... ..+..+.. .++|+++|+||+|+..
T Consensus 64 ~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~ 120 (190)
T cd04144 64 RDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVY 120 (190)
T ss_pred HHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccc
Confidence 89999999999999999876543332 22232221 4689999999999864
No 201
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.20 E-value=4.5e-11 Score=123.85 Aligned_cols=114 Identities=17% Similarity=0.196 Sum_probs=73.4
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccch--
Q 047363 11 NISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFC-- 88 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~-- 88 (876)
+|+|+|..|+|||||+++++...+.... .+. . +..+....+.+....+.++||||||+.+|.
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f~~~~-------------~pt-~--~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~ 65 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEFPEEY-------------IPT-E--HRRLYRPAVVLSGRVYDLHILDVPNMQRYPGT 65 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCCCccc-------------CCc-c--ccccceeEEEECCEEEEEEEEeCCCcccCCcc
Confidence 6899999999999999999865111100 000 0 111111112222223678999999987652
Q ss_pred --HH----HHHHHHhcCeEEEEEcCCCccccchHHHH-HHhh------hhcCCcEEEEecccccc
Q 047363 89 --SE----VSTAARLSDGALVLVDAVEGVHIQTHAVL-RQSW------IEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 89 --~e----~~~al~~aDgaIlVvDa~egv~~~t~~~l-~~~~------~~~ip~ilviNKiD~~~ 140 (876)
.+ ...+++.+|++|+|+|+.+..+.+....| .... ..++|+++|+||+|+..
T Consensus 66 ~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~ 130 (198)
T cd04142 66 AGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQR 130 (198)
T ss_pred chhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccc
Confidence 12 44568899999999999877655443333 2222 24689999999999965
No 202
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.20 E-value=1.4e-10 Score=122.09 Aligned_cols=109 Identities=18% Similarity=0.201 Sum_probs=78.1
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccchHH
Q 047363 11 NISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFCSE 90 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~~e 90 (876)
+|+|+|..++|||||+.+|+.. . .. +.. .|+........+..+.++||||||+..|...
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~--~--f~----------~~~-------~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l 60 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMER--R--FK----------DTV-------STVGGAFYLKQWGPYNISIWDTAGREQFHGL 60 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcC--C--CC----------CCC-------CccceEEEEEEeeEEEEEEEeCCCcccchhh
Confidence 6899999999999999999865 1 10 000 0111111223345688999999999999988
Q ss_pred HHHHHHhcCeEEEEEcCCCccccchHH-HHHHhh---hhcCCcEEEEecccccc
Q 047363 91 VSTAARLSDGALVLVDAVEGVHIQTHA-VLRQSW---IEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 91 ~~~al~~aDgaIlVvDa~egv~~~t~~-~l~~~~---~~~ip~ilviNKiD~~~ 140 (876)
....++.+|++|+|+|+.+..+..... .|..+. ..++|+|||+||+|+..
T Consensus 61 ~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~ 114 (220)
T cd04126 61 GSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTE 114 (220)
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 888999999999999998765444432 233222 24589999999999865
No 203
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.20 E-value=2.9e-11 Score=121.36 Aligned_cols=113 Identities=17% Similarity=0.162 Sum_probs=76.4
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccchHH
Q 047363 11 NISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFCSE 90 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~~e 90 (876)
+|+++|++|+|||||++++... . .... +.. .........+.+....+.+++|||||+.+|...
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~--~--~~~~------~~~-------t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 64 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYAND--A--FPEE------YVP-------TVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRL 64 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhC--C--CCCC------CCC-------ceeeeeEEEEEECCEEEEEEEEeCCCccccccc
Confidence 6899999999999999999865 1 1100 000 000011112233333467899999999999887
Q ss_pred HHHHHHhcCeEEEEEcCCCccccchHH-HH-HHhh--hhcCCcEEEEecccccc
Q 047363 91 VSTAARLSDGALVLVDAVEGVHIQTHA-VL-RQSW--IEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 91 ~~~al~~aDgaIlVvDa~egv~~~t~~-~l-~~~~--~~~ip~ilviNKiD~~~ 140 (876)
....++.+|++|+|+|..+....+... .| .... ..++|+++|+||+|+..
T Consensus 65 ~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~ 118 (174)
T cd04135 65 RPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRD 118 (174)
T ss_pred ccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhc
Confidence 778889999999999998765543321 22 2222 35789999999999864
No 204
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.19 E-value=8.9e-11 Score=118.90 Aligned_cols=111 Identities=16% Similarity=0.129 Sum_probs=78.4
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccch
Q 047363 9 IRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFC 88 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~ 88 (876)
...|+++|..|+|||||+.+|... ... +.. ..-|..+ ..+.+....+.++||||+..|.
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~----~~~----------~~~---~t~~~~~----~~~~~~~~~l~l~D~~G~~~~~ 71 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLG----ESV----------TTI---PTIGFNV----ETVTYKNISFTVWDVGGQDKIR 71 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcC----CCC----------CcC---Cccccce----EEEEECCEEEEEEECCCChhhH
Confidence 467999999999999999999643 110 000 0112222 2344567899999999999999
Q ss_pred HHHHHHHHhcCeEEEEEcCCCccccc-hHHHHHHhh----hhcCCcEEEEecccccc
Q 047363 89 SEVSTAARLSDGALVLVDAVEGVHIQ-THAVLRQSW----IEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 89 ~e~~~al~~aDgaIlVvDa~egv~~~-t~~~l~~~~----~~~ip~ilviNKiD~~~ 140 (876)
......++.+|++|+|+|+++..... ....|.... ..++|++||+||+|+..
T Consensus 72 ~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~ 128 (175)
T smart00177 72 PLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPD 128 (175)
T ss_pred HHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCccc
Confidence 88888999999999999998643221 223333332 23579999999999864
No 205
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.19 E-value=5.4e-11 Score=119.12 Aligned_cols=110 Identities=22% Similarity=0.189 Sum_probs=72.6
Q ss_pred EEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEc-CeEEEEEcCCCCccc-----
Q 047363 14 ILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYK-DYAINLIDSPGHMDF----- 87 (876)
Q Consensus 14 IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~-~~~inlIDTPGh~dF----- 87 (876)
|+|+.|+|||||+++|.+. .-.+.. ..+.|+......+.+. ++.+++|||||+.+.
T Consensus 1 iiG~~~~GKStll~~l~~~--~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~ 62 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNA--KPKVAN----------------YPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGR 62 (176)
T ss_pred CCCCCCCcHHHHHHHHhcC--CccccC----------------CCceeecCcceEEEcCCCCeEEEEeccccchhhhcCC
Confidence 5899999999999999765 211110 1123333333445566 789999999998542
Q ss_pred --hHHHHHHHHhcCeEEEEEcCCCcc------ccchHH-HHHHhh----------hhcCCcEEEEeccccccc
Q 047363 88 --CSEVSTAARLSDGALVLVDAVEGV------HIQTHA-VLRQSW----------IEKLTPCLVLNKIDRLIS 141 (876)
Q Consensus 88 --~~e~~~al~~aDgaIlVvDa~egv------~~~t~~-~l~~~~----------~~~ip~ilviNKiD~~~~ 141 (876)
.......++.+|++++|+|+.+.. ...... ...... ..++|+++|+||+|+...
T Consensus 63 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~ 135 (176)
T cd01881 63 GLGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDA 135 (176)
T ss_pred CccHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCch
Confidence 234566788899999999998762 111111 111221 147899999999999753
No 206
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.19 E-value=3.7e-11 Score=113.11 Aligned_cols=113 Identities=21% Similarity=0.225 Sum_probs=74.5
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccchHH
Q 047363 11 NISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFCSE 90 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~~e 90 (876)
.|.|+|+.|+|||||+++|+.. ... +....+...+.++......+......+.++|++|...+...
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~--~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~ 66 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGG--EFP------------DNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQ 66 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS--S--------------------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCT
T ss_pred CEEEECcCCCCHHHHHHHHhcC--CCc------------ccccccccCCCcEEEEEEEecCCceEEEEEecCccceeccc
Confidence 4899999999999999999987 211 00011111223333333333344456999999999988877
Q ss_pred HHHHHHhcCeEEEEEcCCCccccch-HHHHHHhhh-----hcCCcEEEEeccc
Q 047363 91 VSTAARLSDGALVLVDAVEGVHIQT-HAVLRQSWI-----EKLTPCLVLNKID 137 (876)
Q Consensus 91 ~~~al~~aDgaIlVvDa~egv~~~t-~~~l~~~~~-----~~ip~ilviNKiD 137 (876)
....+..+|++|+|+|..+..+.+- ..++..+.. .++|++||.||.|
T Consensus 67 ~~~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 67 HQFFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp SHHHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred ccchhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 6677999999999999987654332 233222222 3499999999998
No 207
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.19 E-value=1.1e-10 Score=116.03 Aligned_cols=116 Identities=13% Similarity=0.166 Sum_probs=77.5
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEE-EcCeEEEEEcCCCCccchH
Q 047363 11 NISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALH-YKDYAINLIDSPGHMDFCS 89 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~-~~~~~inlIDTPGh~dF~~ 89 (876)
+|+++|.+|+|||||+.+|... ........ ....|..+....+.+. .....+.+|||||+..|..
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~--~~~~~~~~------------~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~ 67 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSN--GAVFPKNY------------LMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSD 67 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcC--CCCcCccC------------CCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHH
Confidence 6899999999999999999754 11111000 0011222222222222 2347899999999999988
Q ss_pred HHHHHHHhcCeEEEEEcCCCccccchHH-HHHHhhh--hcCCcEEEEecccccc
Q 047363 90 EVSTAARLSDGALVLVDAVEGVHIQTHA-VLRQSWI--EKLTPCLVLNKIDRLI 140 (876)
Q Consensus 90 e~~~al~~aDgaIlVvDa~egv~~~t~~-~l~~~~~--~~ip~ilviNKiD~~~ 140 (876)
.....++.+|++|+|+|..+..+..... .+..... .++|+++|+||+|+..
T Consensus 68 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 121 (164)
T cd04101 68 MVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLAD 121 (164)
T ss_pred HHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccccc
Confidence 8899999999999999998654433222 2233332 3589999999999864
No 208
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.18 E-value=8.6e-11 Score=120.45 Aligned_cols=115 Identities=14% Similarity=0.170 Sum_probs=77.1
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccchHH
Q 047363 11 NISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFCSE 90 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~~e 90 (876)
+|+++|.+|+|||||+++|+.. .-... . + ....|.++....+.+......+++|||||..+|...
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~--~~~~~-----~--~------~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~ 66 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHH--RFLVG-----P--Y------QNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAM 66 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhC--CcCCc-----C--c------ccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhh
Confidence 6899999999999999999865 21100 0 0 001122222223333333467889999999988877
Q ss_pred HHHHHHhcCeEEEEEcCCCccccchHH-HHHHhhh--hcCCcEEEEecccccc
Q 047363 91 VSTAARLSDGALVLVDAVEGVHIQTHA-VLRQSWI--EKLTPCLVLNKIDRLI 140 (876)
Q Consensus 91 ~~~al~~aDgaIlVvDa~egv~~~t~~-~l~~~~~--~~ip~ilviNKiD~~~ 140 (876)
....++.+|++|+|+|+.+..+..... .+..+.. .++|+++|+||+|+..
T Consensus 67 ~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 119 (193)
T cd04118 67 SRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIE 119 (193)
T ss_pred hHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccc
Confidence 777888999999999998764433322 2233332 2689999999999864
No 209
>PLN03108 Rab family protein; Provisional
Probab=99.17 E-value=2.5e-10 Score=119.23 Aligned_cols=118 Identities=18% Similarity=0.125 Sum_probs=81.3
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCcc
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMD 86 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~d 86 (876)
+...+|+|+|+.|+|||||+++|+.. .-... +. ..-|.+.....+.+......+++|||||+.+
T Consensus 4 ~~~~kivivG~~gvGKStLi~~l~~~--~~~~~-----------~~---~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~ 67 (210)
T PLN03108 4 AYLFKYIIIGDTGVGKSCLLLQFTDK--RFQPV-----------HD---LTIGVEFGARMITIDNKPIKLQIWDTAGQES 67 (210)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhC--CCCCC-----------CC---CCccceEEEEEEEECCEEEEEEEEeCCCcHH
Confidence 45689999999999999999999865 11000 00 0112222223333333346789999999999
Q ss_pred chHHHHHHHHhcCeEEEEEcCCCccccchHHHHH-Hhh---hhcCCcEEEEecccccc
Q 047363 87 FCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLR-QSW---IEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 87 F~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~-~~~---~~~ip~ilviNKiD~~~ 140 (876)
|.......++.+|++|+|+|+.+..+.+...-|. ... ..++|+++|+||+|+..
T Consensus 68 ~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~ 125 (210)
T PLN03108 68 FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH 125 (210)
T ss_pred HHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCcc
Confidence 9988889999999999999998765444332222 222 24689999999999864
No 210
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.17 E-value=7.4e-11 Score=122.42 Aligned_cols=110 Identities=15% Similarity=0.159 Sum_probs=78.7
Q ss_pred EeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccchHHHHHH
Q 047363 15 LAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFCSEVSTA 94 (876)
Q Consensus 15 vG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~~e~~~a 94 (876)
+|..|+|||||+.+++.. . .... + ...-|+++....+.+......++||||||+.+|......+
T Consensus 1 vG~~~vGKTsLi~r~~~~--~--f~~~------~------~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~ 64 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTG--E--FEKK------Y------VATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGY 64 (200)
T ss_pred CCCCCCCHHHHHHHHhcC--C--CCCC------C------CCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHH
Confidence 599999999999999744 1 1100 0 0011333333333333345789999999999999999999
Q ss_pred HHhcCeEEEEEcCCCccccchHHHHHH-hhh--hcCCcEEEEecccccc
Q 047363 95 ARLSDGALVLVDAVEGVHIQTHAVLRQ-SWI--EKLTPCLVLNKIDRLI 140 (876)
Q Consensus 95 l~~aDgaIlVvDa~egv~~~t~~~l~~-~~~--~~ip~ilviNKiD~~~ 140 (876)
++.+|++|+|+|++...+......|.. +.+ .++|++||+||+|+..
T Consensus 65 ~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~ 113 (200)
T smart00176 65 YIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKD 113 (200)
T ss_pred hcCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECccccc
Confidence 999999999999998877665554544 333 4789999999999853
No 211
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.16 E-value=1.2e-10 Score=118.76 Aligned_cols=113 Identities=14% Similarity=-0.046 Sum_probs=75.7
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEE-EcCeEEEEEcCCCCccchH
Q 047363 11 NISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALH-YKDYAINLIDSPGHMDFCS 89 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~-~~~~~inlIDTPGh~dF~~ 89 (876)
+|+++|..|+|||||+++|+........ ... .+.... ..+... .....+.||||||+.+|..
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~~~~~~----~~t------------~~~~~~-~~i~~~~~~~~~l~i~Dt~G~~~~~~ 64 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKFPEEY----VPT------------VFENYV-TNIQGPNGKIIELALWDTAGQEEYDR 64 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCCC----CCe------------eeeeeE-EEEEecCCcEEEEEEEECCCchhHHH
Confidence 7999999999999999999865111000 000 011110 011111 1235789999999999988
Q ss_pred HHHHHHHhcCeEEEEEcCCCccccchHH-HHHHh-h--hhcCCcEEEEecccccc
Q 047363 90 EVSTAARLSDGALVLVDAVEGVHIQTHA-VLRQS-W--IEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 90 e~~~al~~aDgaIlVvDa~egv~~~t~~-~l~~~-~--~~~ip~ilviNKiD~~~ 140 (876)
.....++.+|++|+|+|+.+..+.+... .|... . ..++|+++|+||.|+..
T Consensus 65 ~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 119 (187)
T cd04132 65 LRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRK 119 (187)
T ss_pred HHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhh
Confidence 8888899999999999998765544332 23222 2 24689999999999864
No 212
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.16 E-value=1.1e-10 Score=119.23 Aligned_cols=114 Identities=17% Similarity=0.221 Sum_probs=78.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccchHH
Q 047363 11 NISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFCSE 90 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~~e 90 (876)
+|+++|..|+|||||+++|+... ... .. ....|.+.....+.+....+.+.+|||||+.+|...
T Consensus 2 ki~v~G~~~vGKSsli~~~~~~~----~~~----------~~--~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~ 65 (188)
T cd04125 2 KVVIIGDYGVGKSSLLKRFTEDE----FSE----------ST--KSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSL 65 (188)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC----CCC----------CC--CCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhh
Confidence 69999999999999999997541 110 00 011122222223333333467899999999999989
Q ss_pred HHHHHHhcCeEEEEEcCCCccccchHHHH-HHhh---hhcCCcEEEEecccccc
Q 047363 91 VSTAARLSDGALVLVDAVEGVHIQTHAVL-RQSW---IEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 91 ~~~al~~aDgaIlVvDa~egv~~~t~~~l-~~~~---~~~ip~ilviNKiD~~~ 140 (876)
....++.+|++|+|+|+.+..+......| .... ..++|+++|+||.|+..
T Consensus 66 ~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~ 119 (188)
T cd04125 66 NNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVN 119 (188)
T ss_pred HHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcc
Confidence 99999999999999999876543332222 2222 23578999999999863
No 213
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.16 E-value=1.1e-10 Score=131.12 Aligned_cols=115 Identities=24% Similarity=0.274 Sum_probs=75.5
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEE-cCeEEEEEcCCCCcc
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHY-KDYAINLIDSPGHMD 86 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~-~~~~inlIDTPGh~d 86 (876)
....|+++|++|+|||||+++|++. . .+.. +. .+.|.......+.+ ++..+.|+||||..+
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~--~-~~v~---------~~------~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~ 249 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGA--D-VYAA---------DQ------LFATLDPTTRRLDLPDGGEVLLTDTVGFIR 249 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC--c-eeec---------cC------CccccCCEEEEEEeCCCceEEEEecCcccc
Confidence 4578999999999999999999765 2 1111 10 01222222233444 457899999999732
Q ss_pred -ch-------HHHHHHHHhcCeEEEEEcCCCccccchH----HHHHHhhhhcCCcEEEEecccccc
Q 047363 87 -FC-------SEVSTAARLSDGALVLVDAVEGVHIQTH----AVLRQSWIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 87 -F~-------~e~~~al~~aDgaIlVvDa~egv~~~t~----~~l~~~~~~~ip~ilviNKiD~~~ 140 (876)
.. ..+...++.||++|+|+|+.+....... .+++.+...++|+++|+||+|+..
T Consensus 250 ~l~~~lie~f~~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~ 315 (351)
T TIGR03156 250 DLPHELVAAFRATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLD 315 (351)
T ss_pred cCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCC
Confidence 11 1233457889999999999876543322 233333334789999999999863
No 214
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.16 E-value=2.4e-10 Score=115.84 Aligned_cols=134 Identities=18% Similarity=0.237 Sum_probs=99.7
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccch
Q 047363 9 IRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFC 88 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~ 88 (876)
.+.|.++|..|||||+|.-.|+..+|.+.+ .+|..+.+.+.+++....+||.|||.+..
T Consensus 38 ~~~Vll~Gl~dSGKT~LF~qL~~gs~~~Tv---------------------tSiepn~a~~r~gs~~~~LVD~PGH~rlR 96 (238)
T KOG0090|consen 38 QNAVLLVGLSDSGKTSLFTQLITGSHRGTV---------------------TSIEPNEATYRLGSENVTLVDLPGHSRLR 96 (238)
T ss_pred CCcEEEEecCCCCceeeeeehhcCCccCee---------------------eeeccceeeEeecCcceEEEeCCCcHHHH
Confidence 367899999999999999999876443322 25667777888888889999999999998
Q ss_pred HHHHHHHH---hcCeEEEEEcCCCccc---cchHHHHHH---h--hhhcCCcEEEEecccccccccccChHHHHHHHHHH
Q 047363 89 SEVSTAAR---LSDGALVLVDAVEGVH---IQTHAVLRQ---S--WIEKLTPCLVLNKIDRLISELKLTPLEAYNRLLRI 157 (876)
Q Consensus 89 ~e~~~al~---~aDgaIlVvDa~egv~---~~t~~~l~~---~--~~~~ip~ilviNKiD~~~~e~~~~~~~~~~~l~~~ 157 (876)
......+. .+-++|+|||+..-.. ...+.++.. + ...++|+++++||.|+..+. +++-+++.|+.-
T Consensus 97 ~kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAk---t~~~Ir~~LEkE 173 (238)
T KOG0090|consen 97 RKLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAK---TAEKIRQQLEKE 173 (238)
T ss_pred HHHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcC---cHHHHHHHHHHH
Confidence 88888887 7889999999975432 112222222 2 24466788899999998764 677788888877
Q ss_pred HHHhhhhhh
Q 047363 158 VHEVNGIMS 166 (876)
Q Consensus 158 l~~vn~~~~ 166 (876)
++.++.--.
T Consensus 174 i~~lr~sRs 182 (238)
T KOG0090|consen 174 IHKLRESRS 182 (238)
T ss_pred HHHHHHHHh
Confidence 776665444
No 215
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.16 E-value=7.7e-11 Score=118.32 Aligned_cols=112 Identities=14% Similarity=0.081 Sum_probs=74.6
Q ss_pred EEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccchHHH
Q 047363 12 ISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFCSEV 91 (876)
Q Consensus 12 I~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~~e~ 91 (876)
|+|+|..|+|||||+++++.. . .... +... . +.. ....+.+....+.+.+|||||+.+|....
T Consensus 1 i~i~G~~~vGKTsli~~~~~~--~--~~~~------~~~~----~--~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 63 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTN--A--FPED------YVPT----V--FEN-YSADVEVDGKPVELGLWDTAGQEDYDRLR 63 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhC--C--CCCC------CCCc----E--Eee-eeEEEEECCEEEEEEEEECCCCcccchhc
Confidence 589999999999999999865 1 1100 0000 0 000 11112222234678999999999998877
Q ss_pred HHHHHhcCeEEEEEcCCCccccchH-H-HHHHhhh--hcCCcEEEEecccccc
Q 047363 92 STAARLSDGALVLVDAVEGVHIQTH-A-VLRQSWI--EKLTPCLVLNKIDRLI 140 (876)
Q Consensus 92 ~~al~~aDgaIlVvDa~egv~~~t~-~-~l~~~~~--~~ip~ilviNKiD~~~ 140 (876)
...++.+|++|+|+|..+..+.+.. . .+..... .++|+++|+||+|+..
T Consensus 64 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 116 (174)
T smart00174 64 PLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLRE 116 (174)
T ss_pred hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhh
Confidence 8888999999999999865444332 1 2222322 3789999999999864
No 216
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.16 E-value=2e-10 Score=128.06 Aligned_cols=115 Identities=19% Similarity=0.169 Sum_probs=79.8
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEE-cCeEEEEEcCCCCcc-
Q 047363 9 IRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHY-KDYAINLIDSPGHMD- 86 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~-~~~~inlIDTPGh~d- 86 (876)
+..|+|+|.+|+|||||+++|... .-.++.. .+.|.......+.+ +...+.++||||..+
T Consensus 158 ~adVglVG~PNaGKSTLln~ls~a--~~~va~y----------------pfTT~~p~~G~v~~~~~~~~~i~D~PGli~g 219 (335)
T PRK12299 158 LADVGLVGLPNAGKSTLISAVSAA--KPKIADY----------------PFTTLHPNLGVVRVDDYKSFVIADIPGLIEG 219 (335)
T ss_pred cCCEEEEcCCCCCHHHHHHHHHcC--CCccCCC----------------CCceeCceEEEEEeCCCcEEEEEeCCCccCC
Confidence 567999999999999999999765 2222111 12355555556666 456899999999764
Q ss_pred ------chHHHHHHHHhcCeEEEEEcCCCccccchHHHH-HHhhh-----hcCCcEEEEeccccccc
Q 047363 87 ------FCSEVSTAARLSDGALVLVDAVEGVHIQTHAVL-RQSWI-----EKLTPCLVLNKIDRLIS 141 (876)
Q Consensus 87 ------F~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l-~~~~~-----~~ip~ilviNKiD~~~~ 141 (876)
+.....+.+..||++|+|+|+.+....+....| ..+.. .++|+++|+||+|+...
T Consensus 220 a~~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~ 286 (335)
T PRK12299 220 ASEGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDE 286 (335)
T ss_pred CCccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCc
Confidence 345667778889999999999854322222223 33332 36899999999998643
No 217
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.15 E-value=8.1e-11 Score=120.72 Aligned_cols=114 Identities=17% Similarity=0.102 Sum_probs=77.1
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccchH
Q 047363 10 RNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFCS 89 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~~ 89 (876)
|+|+++|..|+|||||+.+|+.........+ +. +... ...+.+......++||||||+.+|..
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~------t~----------~~~~-~~~i~~~~~~~~l~i~Dt~G~~~~~~ 63 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEP------TV----------FENY-VHDIFVDGLHIELSLWDTAGQEEFDR 63 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCC------cc----------eeee-EEEEEECCEEEEEEEEECCCChhccc
Confidence 5799999999999999999976511110000 00 1111 11122333347899999999999977
Q ss_pred HHHHHHHhcCeEEEEEcCCCccccchHH--HHHHhhh--hcCCcEEEEecccccc
Q 047363 90 EVSTAARLSDGALVLVDAVEGVHIQTHA--VLRQSWI--EKLTPCLVLNKIDRLI 140 (876)
Q Consensus 90 e~~~al~~aDgaIlVvDa~egv~~~t~~--~l~~~~~--~~ip~ilviNKiD~~~ 140 (876)
.....++.+|++|+|+|..+..+.+... .+..+.. .++|++||+||+|+..
T Consensus 64 l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~ 118 (189)
T cd04134 64 LRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLRE 118 (189)
T ss_pred cccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcc
Confidence 7777889999999999998766554432 2223322 3789999999999964
No 218
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.15 E-value=1.7e-10 Score=123.63 Aligned_cols=113 Identities=13% Similarity=0.218 Sum_probs=76.5
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccchHH
Q 047363 11 NISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFCSE 90 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~~e 90 (876)
+|+++|..|+|||||+++++... .... +..+. + ......+.+....+.++||||+|+.+|...
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~----f~~~------y~pTi------~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~ 64 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGR----FEEQ------YTPTI------E-DFHRKLYSIRGEVYQLDILDTSGNHPFPAM 64 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCC----CCCC------CCCCh------h-HhEEEEEEECCEEEEEEEEECCCChhhhHH
Confidence 68999999999999999998541 1100 00000 0 011122233333478999999999999887
Q ss_pred HHHHHHhcCeEEEEEcCCCccccchHH-HHHHhhh------------hcCCcEEEEecccccc
Q 047363 91 VSTAARLSDGALVLVDAVEGVHIQTHA-VLRQSWI------------EKLTPCLVLNKIDRLI 140 (876)
Q Consensus 91 ~~~al~~aDgaIlVvDa~egv~~~t~~-~l~~~~~------------~~ip~ilviNKiD~~~ 140 (876)
...+++.+|++|+|+|+.+..+.+... ++.++.. .++|+|+|+||+|+..
T Consensus 65 ~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~ 127 (247)
T cd04143 65 RRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDF 127 (247)
T ss_pred HHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchh
Confidence 777889999999999998765443322 2233321 3689999999999964
No 219
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.15 E-value=1.2e-10 Score=118.16 Aligned_cols=114 Identities=16% Similarity=0.048 Sum_probs=77.1
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccchH
Q 047363 10 RNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFCS 89 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~~ 89 (876)
.+|+++|..|+|||||+.+++.... .. ....+. |.... ..+.+....+.++||||||+.+|..
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f----~~----------~~~pt~--~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~ 64 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKF----PS----------EYVPTV--FDNYA-VTVMIGGEPYTLGLFDTAGQEDYDR 64 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC----CC----------CCCCce--eeeeE-EEEEECCEEEEEEEEECCCccchhh
Confidence 4799999999999999999986511 00 000000 11111 0122222237889999999999988
Q ss_pred HHHHHHHhcCeEEEEEcCCCccccchH-HHHH-Hhh--hhcCCcEEEEecccccc
Q 047363 90 EVSTAARLSDGALVLVDAVEGVHIQTH-AVLR-QSW--IEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 90 e~~~al~~aDgaIlVvDa~egv~~~t~-~~l~-~~~--~~~ip~ilviNKiD~~~ 140 (876)
....+++.+|++|+|+|..+..+.... ..|. ... ..++|+|||+||+|+..
T Consensus 65 ~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~ 119 (175)
T cd01874 65 LRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 119 (175)
T ss_pred hhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhh
Confidence 778899999999999999876555443 2332 222 23689999999999864
No 220
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.15 E-value=2.2e-10 Score=117.00 Aligned_cols=111 Identities=16% Similarity=0.141 Sum_probs=77.3
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccch
Q 047363 9 IRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFC 88 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~ 88 (876)
-..|+++|+.|+|||||+.++... ... ... ...|..+ ..+.+.++.+++|||||+..|.
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~~----~~~----------~~~---~T~~~~~----~~~~~~~~~~~l~D~~G~~~~~ 75 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKLG----EVV----------TTI---PTIGFNV----ETVEYKNLKFTMWDVGGQDKLR 75 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcC----Ccc----------ccC---Cccccce----EEEEECCEEEEEEECCCCHhHH
Confidence 357999999999999999999633 110 000 1112222 2345578899999999999999
Q ss_pred HHHHHHHHhcCeEEEEEcCCCccccc-hHHHHHHhhh----hcCCcEEEEecccccc
Q 047363 89 SEVSTAARLSDGALVLVDAVEGVHIQ-THAVLRQSWI----EKLTPCLVLNKIDRLI 140 (876)
Q Consensus 89 ~e~~~al~~aDgaIlVvDa~egv~~~-t~~~l~~~~~----~~ip~ilviNKiD~~~ 140 (876)
......++.+|++|+|+|+.+..... ....+..... .++|++||+||.|+..
T Consensus 76 ~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~ 132 (182)
T PTZ00133 76 PLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPN 132 (182)
T ss_pred HHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCC
Confidence 88899999999999999997532211 1222332211 3579999999999864
No 221
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.14 E-value=2e-10 Score=116.62 Aligned_cols=121 Identities=17% Similarity=0.195 Sum_probs=89.1
Q ss_pred CCCCCCCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcC
Q 047363 2 GDSDTRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDS 81 (876)
Q Consensus 2 ~~~~~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDT 81 (876)
++.++....-||++|.+|+|||||+|+|++. .+.. +. ....|.|...+...+ . -.+.|+|.
T Consensus 17 ~~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~--k~LA--------rt------SktPGrTq~iNff~~--~-~~~~lVDl 77 (200)
T COG0218 17 KQYPEDDLPEIAFAGRSNVGKSSLINALTNQ--KNLA--------RT------SKTPGRTQLINFFEV--D-DELRLVDL 77 (200)
T ss_pred hhCCCCCCcEEEEEccCcccHHHHHHHHhCC--ccee--------ec------CCCCCccceeEEEEe--c-CcEEEEeC
Confidence 3456677889999999999999999999876 3211 00 112356655444333 2 23899999
Q ss_pred CCCc----------cchHHHHHHHH---hcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEeccccccc
Q 047363 82 PGHM----------DFCSEVSTAAR---LSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLIS 141 (876)
Q Consensus 82 PGh~----------dF~~e~~~al~---~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~~ 141 (876)
||+- .....+..++. ...+++++||+..+......+++.++...++|+++++||+|++..
T Consensus 78 PGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~~ 150 (200)
T COG0218 78 PGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLKK 150 (200)
T ss_pred CCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccccCCh
Confidence 9942 12233344443 357899999999999998999999999999999999999999864
No 222
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.14 E-value=1.6e-10 Score=118.16 Aligned_cols=115 Identities=16% Similarity=0.080 Sum_probs=79.6
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccc
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDF 87 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF 87 (876)
.-.+|+++|..++|||||+.+++...+.....+ +. +.... ..+.+......+.||||+|...|
T Consensus 4 ~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~p------T~----------~~~~~-~~~~~~~~~~~l~iwDtaG~e~~ 66 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVP------TV----------FENYT-ASFEIDTQRIELSLWDTSGSPYY 66 (182)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCCCccCC------ce----------eeeeE-EEEEECCEEEEEEEEECCCchhh
Confidence 346799999999999999999986521110000 00 11111 11233333578999999999999
Q ss_pred hHHHHHHHHhcCeEEEEEcCCCccccchH-HHHH-Hhhh--hcCCcEEEEeccccc
Q 047363 88 CSEVSTAARLSDGALVLVDAVEGVHIQTH-AVLR-QSWI--EKLTPCLVLNKIDRL 139 (876)
Q Consensus 88 ~~e~~~al~~aDgaIlVvDa~egv~~~t~-~~l~-~~~~--~~ip~ilviNKiD~~ 139 (876)
......+++.+|++|+|+|..+..+.... ..|. .+.+ .+.|++||.||+|+.
T Consensus 67 ~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~ 122 (182)
T cd04172 67 DNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLR 122 (182)
T ss_pred HhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhh
Confidence 88888899999999999999877665543 3342 2222 368999999999985
No 223
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.14 E-value=1.4e-10 Score=119.23 Aligned_cols=114 Identities=12% Similarity=0.026 Sum_probs=79.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccchH
Q 047363 10 RNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFCS 89 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~~ 89 (876)
.+|+++|..++|||||+.+++.........+ + -|.... ..+.+....+.++||||||+..|..
T Consensus 4 ~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~------t----------~~~~~~-~~~~~~~~~~~l~i~Dt~G~e~~~~ 66 (191)
T cd01875 4 IKCVVVGDGAVGKTCLLICYTTNAFPKEYIP------T----------VFDNYS-AQTAVDGRTVSLNLWDTAGQEEYDR 66 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCCcCCCC------c----------eEeeeE-EEEEECCEEEEEEEEECCCchhhhh
Confidence 5799999999999999999986511100000 0 011111 1122333357899999999999998
Q ss_pred HHHHHHHhcCeEEEEEcCCCccccchHH-HHHH-hh--hhcCCcEEEEecccccc
Q 047363 90 EVSTAARLSDGALVLVDAVEGVHIQTHA-VLRQ-SW--IEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 90 e~~~al~~aDgaIlVvDa~egv~~~t~~-~l~~-~~--~~~ip~ilviNKiD~~~ 140 (876)
.....++.+|++|+|+|..+..+..... .|.. .. ..++|++||.||.|+..
T Consensus 67 l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~ 121 (191)
T cd01875 67 LRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRN 121 (191)
T ss_pred hhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhc
Confidence 8888999999999999998766655443 3432 22 24689999999999864
No 224
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.14 E-value=2e-10 Score=120.35 Aligned_cols=114 Identities=16% Similarity=0.080 Sum_probs=76.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEE-cCeEEEEEcCCCCccchH
Q 047363 11 NISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHY-KDYAINLIDSPGHMDFCS 89 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~-~~~~inlIDTPGh~dF~~ 89 (876)
+|+++|.+|+|||||+++|+........ . ..-|..+....+.+.. ....++||||||+..|..
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~~~~~~--------------~--~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~ 65 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGFGKSY--------------K--QTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGK 65 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCC--------------C--CceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHH
Confidence 6899999999999999999765111000 0 0112222222222221 247899999999999988
Q ss_pred HHHHHHHhcCeEEEEEcCCCccccchHHHH-HHhhh------hcCCcEEEEecccccc
Q 047363 90 EVSTAARLSDGALVLVDAVEGVHIQTHAVL-RQSWI------EKLTPCLVLNKIDRLI 140 (876)
Q Consensus 90 e~~~al~~aDgaIlVvDa~egv~~~t~~~l-~~~~~------~~ip~ilviNKiD~~~ 140 (876)
.....++.+|++|+|+|+.+..+.....-| ..+.+ .+.|+++|+||+|+..
T Consensus 66 l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~ 123 (215)
T cd04109 66 MLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEH 123 (215)
T ss_pred HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECccccc
Confidence 888999999999999999876444332222 22222 2357889999999863
No 225
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.14 E-value=4.3e-10 Score=116.87 Aligned_cols=114 Identities=12% Similarity=0.131 Sum_probs=79.5
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEE-----EcCeEEEEEcCCCCc
Q 047363 11 NISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALH-----YKDYAINLIDSPGHM 85 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~-----~~~~~inlIDTPGh~ 85 (876)
+|+++|..++|||||+.+++....... . ...-|.++....+.+. -..+.++||||+|+.
T Consensus 2 KIvlvGd~gVGKTSLi~~~~~~~f~~~--------------~--~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e 65 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKNQVLGR--------------P--SWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSE 65 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCC--------------C--CcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCch
Confidence 589999999999999999986511100 0 0011222322223321 124689999999999
Q ss_pred cchHHHHHHHHhcCeEEEEEcCCCccccchHHHHH-Hhhh----------------------hcCCcEEEEecccccc
Q 047363 86 DFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLR-QSWI----------------------EKLTPCLVLNKIDRLI 140 (876)
Q Consensus 86 dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~-~~~~----------------------~~ip~ilviNKiD~~~ 140 (876)
+|.......++.+|++|+|+|..+..+.....-|. .+.. .++|++||.||+|+..
T Consensus 66 ~~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~ 143 (202)
T cd04102 66 SVKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIP 143 (202)
T ss_pred hHHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchh
Confidence 99988889999999999999999876655444332 2221 3689999999999864
No 226
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.13 E-value=2.7e-10 Score=115.97 Aligned_cols=113 Identities=18% Similarity=0.132 Sum_probs=77.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccchHH
Q 047363 11 NISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFCSE 90 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~~e 90 (876)
+|+++|..|+|||||+.++..........+ + . +... ...+.+......++||||||+..|...
T Consensus 3 Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~----t--~----------~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~ 65 (178)
T cd04131 3 KIVVVGDVQCGKTALLQVFAKDCYPETYVP----T--V----------FENY-TASFEIDEQRIELSLWDTSGSPYYDNV 65 (178)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCCCcCC----c--e----------EEEE-EEEEEECCEEEEEEEEECCCchhhhhc
Confidence 699999999999999999986521111000 0 0 1111 111233333577899999999999888
Q ss_pred HHHHHHhcCeEEEEEcCCCccccch-HHHHH-Hhhh--hcCCcEEEEecccccc
Q 047363 91 VSTAARLSDGALVLVDAVEGVHIQT-HAVLR-QSWI--EKLTPCLVLNKIDRLI 140 (876)
Q Consensus 91 ~~~al~~aDgaIlVvDa~egv~~~t-~~~l~-~~~~--~~ip~ilviNKiD~~~ 140 (876)
....++.+|++|+|+|..+..+... ..-|. .+.+ .++|++||.||+|+..
T Consensus 66 ~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~ 119 (178)
T cd04131 66 RPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRT 119 (178)
T ss_pred chhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhc
Confidence 8888999999999999987666554 23343 2222 3689999999999853
No 227
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.13 E-value=3.7e-10 Score=128.44 Aligned_cols=114 Identities=18% Similarity=0.167 Sum_probs=78.6
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcC-eEEEEEcCCCCcc-
Q 047363 9 IRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKD-YAINLIDSPGHMD- 86 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~-~~inlIDTPGh~d- 86 (876)
+-.|+|+|.+|+|||||+++|+.. .-.++.. .+.|.......+.+.+ ..|.|+||||..+
T Consensus 159 iadValVG~PNaGKSTLln~Lt~~--k~~vs~~----------------p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~ 220 (390)
T PRK12298 159 LADVGLLGLPNAGKSTFIRAVSAA--KPKVADY----------------PFTTLVPNLGVVRVDDERSFVVADIPGLIEG 220 (390)
T ss_pred cccEEEEcCCCCCHHHHHHHHhCC--cccccCC----------------CCCccCcEEEEEEeCCCcEEEEEeCCCcccc
Confidence 457999999999999999999865 3222211 1234444444555554 4699999999764
Q ss_pred ------chHHHHHHHHhcCeEEEEEcCCCc----cccchHHHHHHhhh-----hcCCcEEEEecccccc
Q 047363 87 ------FCSEVSTAARLSDGALVLVDAVEG----VHIQTHAVLRQSWI-----EKLTPCLVLNKIDRLI 140 (876)
Q Consensus 87 ------F~~e~~~al~~aDgaIlVvDa~eg----v~~~t~~~l~~~~~-----~~ip~ilviNKiD~~~ 140 (876)
+...+.+++..+|++|+|||+... ...+...+++++.. .+.|.++|+||+|+..
T Consensus 221 a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~ 289 (390)
T PRK12298 221 ASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLD 289 (390)
T ss_pred ccchhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCC
Confidence 345677889999999999998721 11222344444443 3589999999999864
No 228
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.13 E-value=3.5e-10 Score=118.33 Aligned_cols=124 Identities=15% Similarity=0.170 Sum_probs=84.3
Q ss_pred CCCCCCCCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEc
Q 047363 1 MGDSDTRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLID 80 (876)
Q Consensus 1 m~~~~~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlID 80 (876)
|.+.......+|+++|+.|+|||||+++++.. ..... +. ..-|..+....+....+...++++|
T Consensus 1 ~~~~~~~~~~kv~liG~~g~GKTtLi~~~~~~----~~~~~------~~------~t~~~~~~~~~~~~~~~~i~i~~~D 64 (215)
T PTZ00132 1 MQQMDEVPEFKLILVGDGGVGKTTFVKRHLTG----EFEKK------YI------PTLGVEVHPLKFYTNCGPICFNVWD 64 (215)
T ss_pred CccccCCCCceEEEECCCCCCHHHHHHHHHhC----CCCCC------CC------CccceEEEEEEEEECCeEEEEEEEE
Confidence 44444555678999999999999999887654 11110 00 0112233222222333457899999
Q ss_pred CCCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHH-h--hhhcCCcEEEEecccccc
Q 047363 81 SPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQ-S--WIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 81 TPGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~-~--~~~~ip~ilviNKiD~~~ 140 (876)
|||+.+|.......++.+|++|+|+|..+..+.+....|.. . ...++|+++++||+|+..
T Consensus 65 t~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~ 127 (215)
T PTZ00132 65 TAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKD 127 (215)
T ss_pred CCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCcc
Confidence 99999998877888889999999999998776655443322 1 124689999999999853
No 229
>PRK11058 GTPase HflX; Provisional
Probab=99.13 E-value=1.9e-10 Score=132.22 Aligned_cols=115 Identities=23% Similarity=0.232 Sum_probs=75.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcC-eEEEEEcCCCCcc
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKD-YAINLIDSPGHMD 86 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~-~~inlIDTPGh~d 86 (876)
.+..|+|+|.+|+|||||+++|++. .-.+. +. .+.|+......+.+.+ ..+.|+||||...
T Consensus 196 ~~p~ValVG~~NaGKSSLlN~Lt~~--~~~v~----------~~------~~tTld~~~~~i~l~~~~~~~l~DTaG~~r 257 (426)
T PRK11058 196 DVPTVSLVGYTNAGKSTLFNRITEA--RVYAA----------DQ------LFATLDPTLRRIDVADVGETVLADTVGFIR 257 (426)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC--ceeec----------cC------CCCCcCCceEEEEeCCCCeEEEEecCcccc
Confidence 3568999999999999999999754 21111 10 1123333223444444 3889999999854
Q ss_pred c--------hHHHHHHHHhcCeEEEEEcCCCccccchH----HHHHHhhhhcCCcEEEEecccccc
Q 047363 87 F--------CSEVSTAARLSDGALVLVDAVEGVHIQTH----AVLRQSWIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 87 F--------~~e~~~al~~aDgaIlVvDa~egv~~~t~----~~l~~~~~~~ip~ilviNKiD~~~ 140 (876)
. ...+...++.+|++|+|+|+.+....... .++..+...++|+++|+||+|+..
T Consensus 258 ~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~ 323 (426)
T PRK11058 258 HLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLD 323 (426)
T ss_pred cCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCC
Confidence 2 11234556889999999999876543332 234444445789999999999863
No 230
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.13 E-value=2.6e-10 Score=116.49 Aligned_cols=113 Identities=17% Similarity=0.196 Sum_probs=76.9
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccchHH
Q 047363 11 NISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFCSE 90 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~~e 90 (876)
+|+++|..++|||||+.+++........ ...-|..+....+.+......+++|||+|+..|...
T Consensus 2 Ki~vlG~~~vGKTsLi~~~~~~~f~~~~----------------~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~ 65 (182)
T cd04128 2 KIGLLGDAQIGKTSLMVKYVEGEFDEDY----------------IQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINM 65 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCC----------------CCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHh
Confidence 5899999999999999999865111000 001123332223333333478999999999999988
Q ss_pred HHHHHHhcCeEEEEEcCCCccccchHHHH-HHhhh---hcCCcEEEEecccccc
Q 047363 91 VSTAARLSDGALVLVDAVEGVHIQTHAVL-RQSWI---EKLTPCLVLNKIDRLI 140 (876)
Q Consensus 91 ~~~al~~aDgaIlVvDa~egv~~~t~~~l-~~~~~---~~ip~ilviNKiD~~~ 140 (876)
...+++.+|++++|+|+.+..+.....-| ..+.+ ..+| |+|+||+|+..
T Consensus 66 ~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~ 118 (182)
T cd04128 66 LPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFA 118 (182)
T ss_pred hHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccc
Confidence 88899999999999999876554433222 23322 2345 78999999863
No 231
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.12 E-value=2.2e-10 Score=115.32 Aligned_cols=118 Identities=12% Similarity=0.075 Sum_probs=79.2
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcc-cccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCc
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLH-PKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHM 85 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~-~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~ 85 (876)
.++.+|+++|..|+|||||+.+++.. . .. . .+.+ .-|.......+.+......++++||+|..
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~--~--f~~~---------~~~~---T~~~~~~~~~~~~~~~~~~l~~~d~~g~~ 65 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGR--S--FSLN---------AYSP---TIKPRYAVNTVEVYGQEKYLILREVGEDE 65 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCC--C--CCcc---------cCCC---ccCcceEEEEEEECCeEEEEEEEecCCcc
Confidence 46789999999999999999999754 1 11 0 0000 01111112223333233678899999999
Q ss_pred cchHHHHHHHHhcCeEEEEEcCCCccccch-HHHHHHhh-hhcCCcEEEEecccccc
Q 047363 86 DFCSEVSTAARLSDGALVLVDAVEGVHIQT-HAVLRQSW-IEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 86 dF~~e~~~al~~aDgaIlVvDa~egv~~~t-~~~l~~~~-~~~ip~ilviNKiD~~~ 140 (876)
.|.......++.+|++|+|+|+.+..+... ..+++... ..++|+++|+||+|+..
T Consensus 66 ~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~ 122 (169)
T cd01892 66 VAILLNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLDE 122 (169)
T ss_pred cccccchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEcccccc
Confidence 998777888899999999999977543322 12333332 23789999999999853
No 232
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.12 E-value=1.8e-10 Score=116.70 Aligned_cols=113 Identities=18% Similarity=0.095 Sum_probs=76.5
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccchHH
Q 047363 11 NISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFCSE 90 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~~e 90 (876)
+|+++|..|+|||||+.+++.........+ +. +... ...+.+......++||||||+.+|...
T Consensus 3 ki~iiG~~~vGKSsli~~~~~~~f~~~~~~------t~----------~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 65 (174)
T cd01871 3 KCVVVGDGAVGKTCLLISYTTNAFPGEYIP------TV----------FDNY-SANVMVDGKPVNLGLWDTAGQEDYDRL 65 (174)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCcCCC------cc----------eeee-EEEEEECCEEEEEEEEECCCchhhhhh
Confidence 689999999999999999975411100000 00 0000 111223333467899999999999888
Q ss_pred HHHHHHhcCeEEEEEcCCCccccchH-HHHHH-hh--hhcCCcEEEEecccccc
Q 047363 91 VSTAARLSDGALVLVDAVEGVHIQTH-AVLRQ-SW--IEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 91 ~~~al~~aDgaIlVvDa~egv~~~t~-~~l~~-~~--~~~ip~ilviNKiD~~~ 140 (876)
...+++.+|++|+|+|..+..+.+.. ..|.. .. ..++|+++|.||+|+..
T Consensus 66 ~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~ 119 (174)
T cd01871 66 RPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 119 (174)
T ss_pred hhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhcc
Confidence 88899999999999999876554443 22322 22 23689999999999863
No 233
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.12 E-value=1.3e-10 Score=110.93 Aligned_cols=113 Identities=21% Similarity=0.205 Sum_probs=78.3
Q ss_pred EEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccchHHHHH
Q 047363 14 ILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFCSEVST 93 (876)
Q Consensus 14 IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~~e~~~ 93 (876)
|+|+.|+|||||+++|... ....... . ...................+.++||||+.++......
T Consensus 1 iiG~~~~GKStl~~~l~~~--~~~~~~~--~------------~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~ 64 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGG--EFVPEEY--E------------TTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRL 64 (157)
T ss_pred CCCcCCCcHHHHHHHHHhC--CcCCccc--c------------cchhheeeEEEEECCEEEEEEEEecCChHHHHhHHHH
Confidence 5899999999999999876 2210000 0 0001111111111123678999999999999888889
Q ss_pred HHHhcCeEEEEEcCCCccccchHHHH-----HHhhhhcCCcEEEEecccccccc
Q 047363 94 AARLSDGALVLVDAVEGVHIQTHAVL-----RQSWIEKLTPCLVLNKIDRLISE 142 (876)
Q Consensus 94 al~~aDgaIlVvDa~egv~~~t~~~l-----~~~~~~~ip~ilviNKiD~~~~e 142 (876)
.++.+|++++|+|+..+........+ ......++|+++|+||+|+...+
T Consensus 65 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~ 118 (157)
T cd00882 65 YYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEER 118 (157)
T ss_pred HhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEecccccccc
Confidence 99999999999999987665554433 33456688999999999997543
No 234
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.11 E-value=1.5e-10 Score=116.68 Aligned_cols=113 Identities=19% Similarity=0.124 Sum_probs=76.1
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccchHH
Q 047363 11 NISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFCSE 90 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~~e 90 (876)
+|+++|..|+|||||+.+++.. . .... +.+ .+.......+.+......+.+|||||+..|...
T Consensus 2 k~~i~G~~~~GKtsl~~~~~~~--~-~~~~----------~~~----t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 64 (173)
T cd04130 2 KCVLVGDGAVGKTSLIVSYTTN--G-YPTE----------YVP----TAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKL 64 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhC--C-CCCC----------CCC----ceeeeeeEEEEECCEEEEEEEEECCCChhhccc
Confidence 5899999999999999998764 1 1110 000 011111111223223467899999999999877
Q ss_pred HHHHHHhcCeEEEEEcCCCccccchH--HHHHHhhh--hcCCcEEEEecccccc
Q 047363 91 VSTAARLSDGALVLVDAVEGVHIQTH--AVLRQSWI--EKLTPCLVLNKIDRLI 140 (876)
Q Consensus 91 ~~~al~~aDgaIlVvDa~egv~~~t~--~~l~~~~~--~~ip~ilviNKiD~~~ 140 (876)
...+++.+|++|+|+|+.+..+.+.. ..+..... .++|+++++||+|+..
T Consensus 65 ~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 118 (173)
T cd04130 65 RPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRT 118 (173)
T ss_pred cccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhcc
Confidence 77788999999999999876554432 23333333 3689999999999863
No 235
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.11 E-value=2.3e-10 Score=121.25 Aligned_cols=117 Identities=23% Similarity=0.228 Sum_probs=86.0
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCcc
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMD 86 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~d 86 (876)
.++-+|+++|.+|+|||||+|.+++. .-.... ... ..|.......+.-+.+.+.|.||||.+.
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig~--kv~~vS----------~K~-----~TTr~~ilgi~ts~eTQlvf~DTPGlvs 132 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIGQ--KVSAVS----------RKV-----HTTRHRILGIITSGETQLVFYDTPGLVS 132 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhCC--cccccc----------ccc-----cceeeeeeEEEecCceEEEEecCCcccc
Confidence 56789999999999999999999976 211111 011 1233333345556789999999999542
Q ss_pred ------------chHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhh-hcCCcEEEEecccccc
Q 047363 87 ------------FCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWI-EKLTPCLVLNKIDRLI 140 (876)
Q Consensus 87 ------------F~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~-~~ip~ilviNKiD~~~ 140 (876)
|......|+..||.+++|+|+.+.-..-.-++++.+.+ .++|-|||+||+|.+.
T Consensus 133 ~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~k 199 (379)
T KOG1423|consen 133 KKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDKLK 199 (379)
T ss_pred cchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeeccchhcch
Confidence 45578899999999999999987444444566766654 5789999999999985
No 236
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.11 E-value=1.5e-10 Score=116.37 Aligned_cols=114 Identities=17% Similarity=0.069 Sum_probs=74.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccchH
Q 047363 10 RNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFCS 89 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~~ 89 (876)
++|+|+|+.|+|||||+.+|..........+ + -+... ...+.+......+.+|||||+.+|..
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~------t----------~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~ 64 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVP------T----------VFENY-VADIEVDGKQVELALWDTAGQEDYDR 64 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCC------c----------cccce-EEEEEECCEEEEEEEEeCCCchhhhh
Confidence 5799999999999999999986521110000 0 01111 11122322346789999999998877
Q ss_pred HHHHHHHhcCeEEEEEcCCCccccchH-HHH-HHhhh--hcCCcEEEEecccccc
Q 047363 90 EVSTAARLSDGALVLVDAVEGVHIQTH-AVL-RQSWI--EKLTPCLVLNKIDRLI 140 (876)
Q Consensus 90 e~~~al~~aDgaIlVvDa~egv~~~t~-~~l-~~~~~--~~ip~ilviNKiD~~~ 140 (876)
....+++.+|++++|+|+.+....... ..| ..... .++|+++|+||+|+..
T Consensus 65 ~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 119 (175)
T cd01870 65 LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 119 (175)
T ss_pred ccccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhccc
Confidence 666788999999999998754332221 222 22222 3789999999999864
No 237
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.11 E-value=7.8e-10 Score=112.41 Aligned_cols=121 Identities=18% Similarity=0.153 Sum_probs=96.1
Q ss_pred CCCCCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCC
Q 047363 4 SDTRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPG 83 (876)
Q Consensus 4 ~~~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPG 83 (876)
.+.+..-.|.++|.+++|||+++.++...+.+- .. -+.-||..+...+.+......+.+|||.|
T Consensus 7 ~~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~--------------~~--~sTiGIDFk~kti~l~g~~i~lQiWDtaG 70 (207)
T KOG0078|consen 7 EDYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNT--------------SF--ISTIGIDFKIKTIELDGKKIKLQIWDTAG 70 (207)
T ss_pred CCcceEEEEEEECCCCCchhHhhhhhhhccCcC--------------Cc--cceEEEEEEEEEEEeCCeEEEEEEEEccc
Confidence 356778899999999999999999998762110 00 01247788888888877788999999999
Q ss_pred CccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHh----hhhcCCcEEEEecccccc
Q 047363 84 HMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQS----WIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 84 h~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~----~~~~ip~ilviNKiD~~~ 140 (876)
+..|...+..++|.|+|+++|+|.....+.....-|... ...++|.+||.||+|+..
T Consensus 71 Qerf~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~ 131 (207)
T KOG0078|consen 71 QERFRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEE 131 (207)
T ss_pred chhHHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccc
Confidence 999999999999999999999999987765554444332 234789999999999976
No 238
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.11 E-value=2e-10 Score=116.88 Aligned_cols=114 Identities=11% Similarity=0.025 Sum_probs=79.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccchH
Q 047363 10 RNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFCS 89 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~~ 89 (876)
.+|+++|..++|||||+.+++........ .... |.+.. ..+.+.....+++||||+|+.+|..
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~--------------~~Ti--~~~~~-~~~~~~~~~v~l~i~Dt~G~~~~~~ 64 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDY--------------IPTV--FDNFS-ANVSVDGNTVNLGLWDTAGQEDYNR 64 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCC--------------CCcc--eeeeE-EEEEECCEEEEEEEEECCCCccccc
Confidence 46999999999999999999855111100 0000 11111 1122333357899999999999998
Q ss_pred HHHHHHHhcCeEEEEEcCCCccccchH-HH-HHHhh--hhcCCcEEEEecccccc
Q 047363 90 EVSTAARLSDGALVLVDAVEGVHIQTH-AV-LRQSW--IEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 90 e~~~al~~aDgaIlVvDa~egv~~~t~-~~-l~~~~--~~~ip~ilviNKiD~~~ 140 (876)
.....++.+|++|+|+|..+..+.+.. .. ++.+. ..++|++||.||+|+..
T Consensus 65 ~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~ 119 (176)
T cd04133 65 LRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRD 119 (176)
T ss_pred cchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhcc
Confidence 888899999999999999876665543 22 23332 24689999999999964
No 239
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=4.1e-10 Score=112.51 Aligned_cols=121 Identities=21% Similarity=0.195 Sum_probs=92.9
Q ss_pred CCCCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCC
Q 047363 5 DTRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGH 84 (876)
Q Consensus 5 ~~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh 84 (876)
.+-+.-.++++|..++|||||+.++.+.++...... .-|+.+-+..+.+....+++.||||+|+
T Consensus 18 ~~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqA----------------TIGiDFlskt~~l~d~~vrLQlWDTAGQ 81 (221)
T KOG0094|consen 18 APLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQA----------------TIGIDFLSKTMYLEDRTVRLQLWDTAGQ 81 (221)
T ss_pred ccceEEEEEEEccCccchHHHHHHHHHhhhcccccc----------------eeeeEEEEEEEEEcCcEEEEEEEecccH
Confidence 344557899999999999999999999854322211 2367777777777767789999999999
Q ss_pred ccchHHHHHHHHhcCeEEEEEcCCCccccc-hHHHHHHhhhh----cCCcEEEEeccccccc
Q 047363 85 MDFCSEVSTAARLSDGALVLVDAVEGVHIQ-THAVLRQSWIE----KLTPCLVLNKIDRLIS 141 (876)
Q Consensus 85 ~dF~~e~~~al~~aDgaIlVvDa~egv~~~-t~~~l~~~~~~----~ip~ilviNKiD~~~~ 141 (876)
++|...+..++|.++.||+|+|..+--+.. |..-+.-+..+ ++-++||.||.|+...
T Consensus 82 ERFrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dk 143 (221)
T KOG0094|consen 82 ERFRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDK 143 (221)
T ss_pred HHHhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccch
Confidence 999999999999999999999998765543 44444445433 2445678999999864
No 240
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.10 E-value=5.4e-10 Score=115.39 Aligned_cols=115 Identities=12% Similarity=0.152 Sum_probs=81.8
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccch-
Q 047363 10 RNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFC- 88 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~- 88 (876)
+||+++|.+|+|||||+|+|++. ....+. ....+.|.........+.+..+++|||||..++.
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~--~~~~~~--------------~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~ 64 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGR--EVFESK--------------LSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSV 64 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCC--Cccccc--------------cCCCCcccccceeeEEECCeEEEEEECcCCCCccC
Confidence 58999999999999999999876 322111 0123455555556667788999999999988762
Q ss_pred ------HHHHHHH----HhcCeEEEEEcCCCccccchHHHHHHhhhh-----cCCcEEEEeccccccc
Q 047363 89 ------SEVSTAA----RLSDGALVLVDAVEGVHIQTHAVLRQSWIE-----KLTPCLVLNKIDRLIS 141 (876)
Q Consensus 89 ------~e~~~al----~~aDgaIlVvDa~egv~~~t~~~l~~~~~~-----~ip~ilviNKiD~~~~ 141 (876)
.++..++ ...|++|+|+|+.. .......+++.+.+. -.++++++|+.|.+..
T Consensus 65 ~~~~~~~~i~~~~~~~~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~ 131 (196)
T cd01852 65 SPEQLSKEIVRCLSLSAPGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEG 131 (196)
T ss_pred ChHHHHHHHHHHHHhcCCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCC
Confidence 2233332 34689999999876 665666666666542 2578899999998754
No 241
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.10 E-value=6.5e-10 Score=117.89 Aligned_cols=113 Identities=14% Similarity=0.086 Sum_probs=78.0
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccchH
Q 047363 10 RNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFCS 89 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~~ 89 (876)
..|+++|..++|||+|+.+++...+.....+ .. |.... ..+.+......++||||+|..+|..
T Consensus 14 ~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~p--------------Ti--~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~ 76 (232)
T cd04174 14 CKLVLVGDVQCGKTAMLQVLAKDCYPETYVP--------------TV--FENYT-AGLETEEQRVELSLWDTSGSPYYDN 76 (232)
T ss_pred EEEEEECCCCCcHHHHHHHHhcCCCCCCcCC--------------ce--eeeeE-EEEEECCEEEEEEEEeCCCchhhHH
Confidence 4689999999999999999975521110000 00 11111 1123333357899999999999988
Q ss_pred HHHHHHHhcCeEEEEEcCCCccccch-HHHHHH-hhh--hcCCcEEEEeccccc
Q 047363 90 EVSTAARLSDGALVLVDAVEGVHIQT-HAVLRQ-SWI--EKLTPCLVLNKIDRL 139 (876)
Q Consensus 90 e~~~al~~aDgaIlVvDa~egv~~~t-~~~l~~-~~~--~~ip~ilviNKiD~~ 139 (876)
....+++.+|++|+|+|..+..+... ...|.. +.+ .++|+|||+||+|+.
T Consensus 77 ~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~ 130 (232)
T cd04174 77 VRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLR 130 (232)
T ss_pred HHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc
Confidence 88889999999999999987766554 233432 322 367899999999985
No 242
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.10 E-value=2.3e-10 Score=110.43 Aligned_cols=118 Identities=16% Similarity=0.173 Sum_probs=92.1
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCcc
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMD 86 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~d 86 (876)
.....|.+||.+|+|||+|+-+++..+.. +.. + ..-|+.++...+++..+.+++.||||+|++.
T Consensus 9 ~~t~KiLlIGeSGVGKSSLllrFv~~~fd----~~~----------~--~tIGvDFkvk~m~vdg~~~KlaiWDTAGqEr 72 (209)
T KOG0080|consen 9 DTTFKILLIGESGVGKSSLLLRFVSNTFD----DLH----------P--TTIGVDFKVKVMQVDGKRLKLAIWDTAGQER 72 (209)
T ss_pred ceeEEEEEEccCCccHHHHHHHHHhcccC----ccC----------C--ceeeeeEEEEEEEEcCceEEEEEEeccchHh
Confidence 34578999999999999999999876321 111 1 1237888888899988899999999999999
Q ss_pred chHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHh-----hhhcCCcEEEEecccccc
Q 047363 87 FCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQS-----WIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 87 F~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~-----~~~~ip~ilviNKiD~~~ 140 (876)
|..-+..++|.|.|+|+|.|.+...+..-..+|-.- ...++-.++|.||+|+..
T Consensus 73 FRtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes 131 (209)
T KOG0080|consen 73 FRTLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKES 131 (209)
T ss_pred hhccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchh
Confidence 999999999999999999999876555444555332 233566678999999763
No 243
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.10 E-value=5e-10 Score=126.06 Aligned_cols=115 Identities=20% Similarity=0.268 Sum_probs=91.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccc--
Q 047363 10 RNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDF-- 87 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF-- 87 (876)
-+++|+|.+|+|||||+|+|++. ...|....+| .|.+.-...+..+++.+.++||+|..+=
T Consensus 218 ~kvvIiG~PNvGKSSLLNaL~~~--d~AIVTdI~G---------------TTRDviee~i~i~G~pv~l~DTAGiRet~d 280 (454)
T COG0486 218 LKVVIIGRPNVGKSSLLNALLGR--DRAIVTDIAG---------------TTRDVIEEDINLNGIPVRLVDTAGIRETDD 280 (454)
T ss_pred ceEEEECCCCCcHHHHHHHHhcC--CceEecCCCC---------------CccceEEEEEEECCEEEEEEecCCcccCcc
Confidence 46999999999999999999998 6666544444 4555555678889999999999997653
Q ss_pred ------hHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccccc
Q 047363 88 ------CSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLISE 142 (876)
Q Consensus 88 ------~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~~e 142 (876)
......++..||.+++|+|+.++.......++. +...+.|+++|+||+|+....
T Consensus 281 ~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~-~~~~~~~~i~v~NK~DL~~~~ 340 (454)
T COG0486 281 VVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIE-LLPKKKPIIVVLNKADLVSKI 340 (454)
T ss_pred HHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHH-hcccCCCEEEEEechhccccc
Confidence 334667888999999999999886666666655 566778999999999998643
No 244
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.09 E-value=4.7e-10 Score=124.99 Aligned_cols=114 Identities=19% Similarity=0.184 Sum_probs=76.7
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcC-eEEEEEcCCCCcc-
Q 047363 9 IRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKD-YAINLIDSPGHMD- 86 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~-~~inlIDTPGh~d- 86 (876)
+-.|+|+|.+|+|||||+++|... .-.++... ..|.......+.+.+ ..+.|+||||+.+
T Consensus 157 ~adV~lvG~pnaGKSTLl~~lt~~--~~~va~y~----------------fTT~~p~ig~v~~~~~~~~~i~D~PGli~~ 218 (329)
T TIGR02729 157 LADVGLVGLPNAGKSTLISAVSAA--KPKIADYP----------------FTTLVPNLGVVRVDDGRSFVIADIPGLIEG 218 (329)
T ss_pred cccEEEEcCCCCCHHHHHHHHhcC--CccccCCC----------------CCccCCEEEEEEeCCceEEEEEeCCCcccC
Confidence 577999999999999999999765 22221110 123333334455555 8999999999864
Q ss_pred ------chHHHHHHHHhcCeEEEEEcCCCc---cccch-HHHHHHhhh-----hcCCcEEEEecccccc
Q 047363 87 ------FCSEVSTAARLSDGALVLVDAVEG---VHIQT-HAVLRQSWI-----EKLTPCLVLNKIDRLI 140 (876)
Q Consensus 87 ------F~~e~~~al~~aDgaIlVvDa~eg---v~~~t-~~~l~~~~~-----~~ip~ilviNKiD~~~ 140 (876)
+.....+.+..||++|+|+|+.+. ..... ..+.+++.. .++|+++|+||+|+..
T Consensus 219 a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~ 287 (329)
T TIGR02729 219 ASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLD 287 (329)
T ss_pred CcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCC
Confidence 334566777789999999999854 11122 222233322 3689999999999864
No 245
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.09 E-value=2.8e-10 Score=119.93 Aligned_cols=114 Identities=18% Similarity=0.163 Sum_probs=78.6
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccchH
Q 047363 10 RNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFCS 89 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~~ 89 (876)
.+|+|+|..|+|||||+.+|+.........+ +. +.... ..+.+....+.++||||+|+..|..
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~p------Ti----------~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~ 64 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVP------TV----------FENYT-ASFEIDKRRIELNMWDTSGSSYYDN 64 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCC------cc----------ccceE-EEEEECCEEEEEEEEeCCCcHHHHH
Confidence 4789999999999999999986521110000 00 11111 1123333357889999999999988
Q ss_pred HHHHHHHhcCeEEEEEcCCCccccchH-HHHHHhh---hhcCCcEEEEecccccc
Q 047363 90 EVSTAARLSDGALVLVDAVEGVHIQTH-AVLRQSW---IEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 90 e~~~al~~aDgaIlVvDa~egv~~~t~-~~l~~~~---~~~ip~ilviNKiD~~~ 140 (876)
....+++.+|++|+|+|..+..+.... ..|.... ..++|+|||+||+|+..
T Consensus 65 l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~ 119 (222)
T cd04173 65 VRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRT 119 (222)
T ss_pred HhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECccccc
Confidence 888899999999999999877554443 3343221 24689999999999864
No 246
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.09 E-value=8.9e-10 Score=127.69 Aligned_cols=114 Identities=19% Similarity=0.190 Sum_probs=78.8
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCcc--
Q 047363 9 IRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMD-- 86 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~d-- 86 (876)
+..|+|+|.+|+|||||+++|+.. .-.|+ ++ .+.|+......+.+.+..|.|+||||..+
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~a--kpkIa----------dy------pfTTl~P~lGvv~~~~~~f~laDtPGliega 220 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAA--KPKIA----------DY------PFTTLVPNLGVVQAGDTRFTVADVPGLIPGA 220 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcC--Ccccc----------cc------CcccccceEEEEEECCeEEEEEECCCCcccc
Confidence 578999999999999999999765 22221 11 23455556666777889999999999753
Q ss_pred -----chHHHHHHHHhcCeEEEEEcCCCc---ccc--chHHHHHHh--------------hhhcCCcEEEEecccccc
Q 047363 87 -----FCSEVSTAARLSDGALVLVDAVEG---VHI--QTHAVLRQS--------------WIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 87 -----F~~e~~~al~~aDgaIlVvDa~eg---v~~--~t~~~l~~~--------------~~~~ip~ilviNKiD~~~ 140 (876)
...+..+.+..||++|+|||+... ..+ ....+.+++ ...+.|.|+|+||+|++.
T Consensus 221 s~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~d 298 (500)
T PRK12296 221 SEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPD 298 (500)
T ss_pred chhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchh
Confidence 223566778889999999999741 111 111121122 124689999999999874
No 247
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.09 E-value=4.2e-10 Score=112.14 Aligned_cols=114 Identities=17% Similarity=0.159 Sum_probs=76.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccchHH
Q 047363 11 NISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFCSE 90 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~~e 90 (876)
+|+++|..|+|||||+.+++.. ...... ....|.......+.+......+.+|||||..+|...
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~----~~~~~~------------~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~ 65 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDN----EFHSSH------------ISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTI 65 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcC----CCCCCC------------CCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhh
Confidence 6899999999999999999754 111100 001122222222222222367899999999999988
Q ss_pred HHHHHHhcCeEEEEEcCCCccccchHHHH-HHhh---hhcCCcEEEEecccccc
Q 047363 91 VSTAARLSDGALVLVDAVEGVHIQTHAVL-RQSW---IEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 91 ~~~al~~aDgaIlVvDa~egv~~~t~~~l-~~~~---~~~ip~ilviNKiD~~~ 140 (876)
....++.+|++++|+|..+..+.....-| .... ..++|+++|.||.|+..
T Consensus 66 ~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~ 119 (161)
T cd04117 66 TKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQ 119 (161)
T ss_pred HHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 88999999999999999875444333322 2221 23689999999999864
No 248
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.07 E-value=4.8e-10 Score=117.31 Aligned_cols=115 Identities=18% Similarity=0.168 Sum_probs=76.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEE-EcCeEEEEEcCCCCccch
Q 047363 10 RNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALH-YKDYAINLIDSPGHMDFC 88 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~-~~~~~inlIDTPGh~dF~ 88 (876)
.+|+++|..|+|||||+++|+.. . .... .+ ...|.......+.+. ...+.++++||||+..|.
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~--~--~~~~-------~~-----~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~ 66 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEG--R--FAEV-------SD-----PTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFR 66 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcC--C--CCCC-------CC-----ceeceEEEEEEEEECCCCEEEEEEEeCCcchhHH
Confidence 68999999999999999999865 2 1100 00 001222211222221 123689999999999998
Q ss_pred HHHHHHHHhcCeEEEEEcCCCccccchHH-HHHHhh----hhcCCcEEEEecccccc
Q 047363 89 SEVSTAARLSDGALVLVDAVEGVHIQTHA-VLRQSW----IEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 89 ~e~~~al~~aDgaIlVvDa~egv~~~t~~-~l~~~~----~~~ip~ilviNKiD~~~ 140 (876)
......++.+|++|+|+|..+..+..... .+..+. ...+|+++|+||+|+..
T Consensus 67 ~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~ 123 (211)
T cd04111 67 SITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLES 123 (211)
T ss_pred HHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEcccccc
Confidence 88888999999999999998754433322 222222 23467788999999864
No 249
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.07 E-value=7.6e-10 Score=126.63 Aligned_cols=113 Identities=12% Similarity=0.137 Sum_probs=77.2
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEc-CeEEEEEcCCCCcc-
Q 047363 9 IRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYK-DYAINLIDSPGHMD- 86 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~-~~~inlIDTPGh~d- 86 (876)
+..|+++|.+|+|||||+++|+.. ...++.. .+.|.......+.+. +..+.|+||||...
T Consensus 158 ~adVglVG~pNaGKSTLLn~Lt~a--k~kIa~y----------------pfTTl~PnlG~v~~~~~~~~~laD~PGlieg 219 (424)
T PRK12297 158 LADVGLVGFPNVGKSTLLSVVSNA--KPKIANY----------------HFTTLVPNLGVVETDDGRSFVMADIPGLIEG 219 (424)
T ss_pred cCcEEEEcCCCCCHHHHHHHHHcC--CCccccC----------------CcceeceEEEEEEEeCCceEEEEECCCCccc
Confidence 458999999999999999999865 3222211 123444555555565 68899999999754
Q ss_pred ------chHHHHHHHHhcCeEEEEEcCCCc--cc--cchHHHHHHhhh-----hcCCcEEEEeccccc
Q 047363 87 ------FCSEVSTAARLSDGALVLVDAVEG--VH--IQTHAVLRQSWI-----EKLTPCLVLNKIDRL 139 (876)
Q Consensus 87 ------F~~e~~~al~~aDgaIlVvDa~eg--v~--~~t~~~l~~~~~-----~~ip~ilviNKiD~~ 139 (876)
+.....+.+..||++|+|||+... .. .....+...+.. .++|.++|+||+|+.
T Consensus 220 a~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~ 287 (424)
T PRK12297 220 ASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLP 287 (424)
T ss_pred ccccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCc
Confidence 234566677789999999999743 11 112233333332 368999999999974
No 250
>PLN00023 GTP-binding protein; Provisional
Probab=99.07 E-value=7e-10 Score=121.56 Aligned_cols=119 Identities=14% Similarity=0.118 Sum_probs=81.0
Q ss_pred CCCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEE-------------c
Q 047363 6 TRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHY-------------K 72 (876)
Q Consensus 6 ~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~-------------~ 72 (876)
+....+|+++|..|+|||||+.+|+........ ...-|.++....+.+.. .
T Consensus 18 ~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~----------------~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k 81 (334)
T PLN00023 18 PCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARP----------------PQTIGCTVGVKHITYGSPGSSSNSIKGDSER 81 (334)
T ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCccccc----------------CCceeeeEEEEEEEECCcccccccccccCCc
Confidence 344578999999999999999999865111000 01112333222233211 2
Q ss_pred CeEEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHH-HHhhhh---------------cCCcEEEEecc
Q 047363 73 DYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVL-RQSWIE---------------KLTPCLVLNKI 136 (876)
Q Consensus 73 ~~~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l-~~~~~~---------------~ip~ilviNKi 136 (876)
.+.++||||+|+..|.......++.+|++|+|+|..+.........| ..+... ++|+|||.||+
T Consensus 82 ~v~LqIWDTAGqErfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~ 161 (334)
T PLN00023 82 DFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKA 161 (334)
T ss_pred eEEEEEEECCCChhhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECc
Confidence 46799999999999999999999999999999999875544333323 333322 47999999999
Q ss_pred cccc
Q 047363 137 DRLI 140 (876)
Q Consensus 137 D~~~ 140 (876)
|+..
T Consensus 162 DL~~ 165 (334)
T PLN00023 162 DIAP 165 (334)
T ss_pred cccc
Confidence 9864
No 251
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.06 E-value=7.8e-10 Score=107.56 Aligned_cols=98 Identities=29% Similarity=0.307 Sum_probs=71.4
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCC----C
Q 047363 9 IRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPG----H 84 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPG----h 84 (876)
++.|.++|++|+|||||+++|.+. ..... ++. .+.|. =++||||| +
T Consensus 1 MkrimliG~~g~GKTTL~q~L~~~--~~~~~-----------------------KTq--~i~~~---~~~IDTPGEyiE~ 50 (143)
T PF10662_consen 1 MKRIMLIGPSGSGKTTLAQALNGE--EIRYK-----------------------KTQ--AIEYY---DNTIDTPGEYIEN 50 (143)
T ss_pred CceEEEECCCCCCHHHHHHHHcCC--CCCcC-----------------------ccc--eeEec---ccEEECChhheeC
Confidence 478999999999999999999765 21110 111 12222 26799999 5
Q ss_pred ccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEeccccc
Q 047363 85 MDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRL 139 (876)
Q Consensus 85 ~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~ 139 (876)
..|..........||.+++|.|+.+..+.-.-. .+...+.|+|-|+||+|+.
T Consensus 51 ~~~y~aLi~ta~dad~V~ll~dat~~~~~~pP~---fa~~f~~pvIGVITK~Dl~ 102 (143)
T PF10662_consen 51 PRFYHALIVTAQDADVVLLLQDATEPRSVFPPG---FASMFNKPVIGVITKIDLP 102 (143)
T ss_pred HHHHHHHHHHHhhCCEEEEEecCCCCCccCCch---hhcccCCCEEEEEECccCc
Confidence 567778888888999999999999865433322 2334568999999999998
No 252
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.04 E-value=2.4e-09 Score=106.05 Aligned_cols=123 Identities=21% Similarity=0.235 Sum_probs=83.4
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccchHH
Q 047363 11 NISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFCSE 90 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~~e 90 (876)
.|+++|+.++|||||+.+|... . ... . +. ...|.......+.+....+.+.||||+|+..|...
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~--~--~~~----~--~~------~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~ 64 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLING--E--FPE----N--YI------PTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSL 64 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS--S--TTS----S--SE------TTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHH
T ss_pred CEEEECCCCCCHHHHHHHHHhh--c--ccc----c--cc------ccccccccccccccccccccccccccccccccccc
Confidence 4899999999999999999865 1 110 0 00 01123333333333334577999999999999888
Q ss_pred HHHHHHhcCeEEEEEcCCCccccchHHHHHH-hh---hhcCCcEEEEecccccccccccChHHH
Q 047363 91 VSTAARLSDGALVLVDAVEGVHIQTHAVLRQ-SW---IEKLTPCLVLNKIDRLISELKLTPLEA 150 (876)
Q Consensus 91 ~~~al~~aDgaIlVvDa~egv~~~t~~~l~~-~~---~~~ip~ilviNKiD~~~~e~~~~~~~~ 150 (876)
....++.+|++|+|+|..+..+.....-|.. .. ....|++|+.||.|+.. ....+.+++
T Consensus 65 ~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~-~~~v~~~~~ 127 (162)
T PF00071_consen 65 RDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSD-EREVSVEEA 127 (162)
T ss_dssp HHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGG-GSSSCHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccceeeeccccccc-cccchhhHH
Confidence 8889999999999999987665555444432 22 22478899999999876 223444443
No 253
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.03 E-value=1e-09 Score=111.33 Aligned_cols=114 Identities=22% Similarity=0.254 Sum_probs=84.3
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCcc
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMD 86 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~d 86 (876)
.+-.+|+++|..|+|||||+++|... .+.. . .-|+......+.+.++.++++|.+|+..
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~----~~~~----------~-------~pT~g~~~~~i~~~~~~~~~~d~gG~~~ 70 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNG----EISE----------T-------IPTIGFNIEEIKYKGYSLTIWDLGGQES 70 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSS----SEEE----------E-------EEESSEEEEEEEETTEEEEEEEESSSGG
T ss_pred CcEEEEEEECCCccchHHHHHHhhhc----cccc----------c-------CcccccccceeeeCcEEEEEEecccccc
Confidence 56688999999999999999999632 1110 0 1133334456777899999999999999
Q ss_pred chHHHHHHHHhcCeEEEEEcCCCccc-cchHHHHHHh----hhhcCCcEEEEeccccccc
Q 047363 87 FCSEVSTAARLSDGALVLVDAVEGVH-IQTHAVLRQS----WIEKLTPCLVLNKIDRLIS 141 (876)
Q Consensus 87 F~~e~~~al~~aDgaIlVvDa~egv~-~~t~~~l~~~----~~~~ip~ilviNKiD~~~~ 141 (876)
|...+...+..+|++|+|||+.+... ......+..+ ...++|+++++||.|+..+
T Consensus 71 ~~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~ 130 (175)
T PF00025_consen 71 FRPLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDA 130 (175)
T ss_dssp GGGGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTS
T ss_pred ccccceeeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCc
Confidence 98888899999999999999986532 2222233332 2346899999999999864
No 254
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.03 E-value=8.8e-10 Score=116.18 Aligned_cols=113 Identities=14% Similarity=0.135 Sum_probs=72.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccchHH
Q 047363 11 NISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFCSE 90 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~~e 90 (876)
+|+++|..|+|||||+++|+.. . ... ... +...+.......+.+......+++|||||+.++..
T Consensus 2 KI~lvG~~gvGKTsLi~~~~~~--~--~~~---------~~~--~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~- 65 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFTSG--E--YDD---------HAY--DASGDDDTYERTVSVDGEESTLVVIDHWEQEMWTE- 65 (221)
T ss_pred EEEEECCCCCcHHHHHHHHhcC--C--cCc---------cCc--CCCccccceEEEEEECCEEEEEEEEeCCCcchHHH-
Confidence 6899999999999999999743 1 100 000 00001111122233434567899999999984332
Q ss_pred HHHHHH-hcCeEEEEEcCCCccccchH-HHHHHhhh----hcCCcEEEEecccccc
Q 047363 91 VSTAAR-LSDGALVLVDAVEGVHIQTH-AVLRQSWI----EKLTPCLVLNKIDRLI 140 (876)
Q Consensus 91 ~~~al~-~aDgaIlVvDa~egv~~~t~-~~l~~~~~----~~ip~ilviNKiD~~~ 140 (876)
...++ .+|++|+|+|+.+..+.... .++..+.. .++|+|+|+||+|+..
T Consensus 66 -~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~ 120 (221)
T cd04148 66 -DSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLAR 120 (221)
T ss_pred -hHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccc
Confidence 34556 89999999999876544322 23333333 4689999999999864
No 255
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.02 E-value=2.6e-09 Score=116.29 Aligned_cols=122 Identities=21% Similarity=0.299 Sum_probs=78.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcC--eEEEEEcCCCCccc
Q 047363 10 RNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKD--YAINLIDSPGHMDF 87 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~--~~inlIDTPGh~dF 87 (876)
-||+++|+.|+|||||+++|+.. . ..... +.. +.......+.+++......+..++ ..+++|||||.-|+
T Consensus 5 f~I~vvG~sg~GKSTliN~L~~~--~-~~~~~--~~~---~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~ 76 (276)
T cd01850 5 FNIMVVGESGLGKSTFINTLFNT--K-LIPSD--YPP---DPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDN 76 (276)
T ss_pred EEEEEEcCCCCCHHHHHHHHHcC--C-Ccccc--CCC---CccccccCCceEEEEEEEEEEECCEEEEEEEEecCCcccc
Confidence 58999999999999999999765 2 11110 000 001111222333444444444444 57999999998776
Q ss_pred hH---------------------HHHHHHH-------hcCeEEEEEcCCC-ccccchHHHHHHhhhhcCCcEEEEecccc
Q 047363 88 CS---------------------EVSTAAR-------LSDGALVLVDAVE-GVHIQTHAVLRQSWIEKLTPCLVLNKIDR 138 (876)
Q Consensus 88 ~~---------------------e~~~al~-------~aDgaIlVvDa~e-gv~~~t~~~l~~~~~~~ip~ilviNKiD~ 138 (876)
.. +.....+ .+|++++++++.. +.......+++.+.. ++|+++|+||+|+
T Consensus 77 ~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~-~v~vi~VinK~D~ 155 (276)
T cd01850 77 INNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK-RVNIIPVIAKADT 155 (276)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc-cCCEEEEEECCCc
Confidence 32 1111112 3578888888764 666666777887764 8999999999999
Q ss_pred cc
Q 047363 139 LI 140 (876)
Q Consensus 139 ~~ 140 (876)
+.
T Consensus 156 l~ 157 (276)
T cd01850 156 LT 157 (276)
T ss_pred CC
Confidence 75
No 256
>PF03764 EFG_IV: Elongation factor G, domain IV; InterPro: IPR005517 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF2 (EF-G) is a G-protein. It brings about the translocation of peptidyl-tRNA and mRNA through a ratchet-like mechanism: the binding of GTP-EF2 to the ribosome causes a counter-clockwise rotation in the small ribosomal subunit; the hydrolysis of GTP to GDP by EF2 and the subsequent release of EF2 causes a clockwise rotation of the small subunit back to the starting position [, ]. This twisting action destabilises tRNA-ribosome interactions, freeing the tRNA to translocate along the ribosome upon GTP-hydrolysis by EF2. EF2 binding also affects the entry and exit channel openings for the mRNA, widening it when bound to enable the mRNA to translocate along the ribosome. EF2 has five domains. This entry represents domain IV found in EF2 (or EF-G) of both prokaryotes and eukaryotes. The EF2-GTP-ribosome complex undergoes extensive structural rearrangement for tRNA-mRNA movement to occur. Domain IV, which extends from the 'body' of the EF2 molecule much like a lever arm, appears to be essential for the structural transition to take place. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3J0E_H 1FNM_A 3IZP_E 2OM7_L 1KTV_A 2J7K_A 2BM1_A 2BM0_A 2BV3_A 1ZM3_E ....
Probab=99.02 E-value=2.7e-10 Score=108.43 Aligned_cols=70 Identities=24% Similarity=0.363 Sum_probs=57.8
Q ss_pred HHH-hhccEEEECCCCCCCeEEEcCCCCCCCCcccceecccccccccccccCCCCCCCCccCCCCCCCccchhhhhhhHH
Q 047363 729 WQK-LLRRIWALGPRQIGPNILFKPDDKQIDTESSVLVRGSAHVSERLGFVDNSDDGDAAEEIPPGVNRASFVEAQSLES 807 (876)
Q Consensus 729 w~~-~~~~IwafGP~~~g~NiL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 (876)
|+. .++.+|+|+|...++|+++ |.+.+. ...+++.+
T Consensus 26 ~~~~~a~v~~~~~P~~~~~~~~~-------~~~~~~------------------------------------~l~~~~~~ 62 (120)
T PF03764_consen 26 GKRQFAKVILRVEPLEGGGNIFV-------DETEGG------------------------------------QLPKEFQD 62 (120)
T ss_dssp SSEEEEEEEEEEEETSTSSEEEE-------ESSSTT------------------------------------SSGGGGHH
T ss_pred CCCceEEEEEEEeecccCCceee-------eccccc------------------------------------cccHHHHH
Confidence 654 5777999999887899999 543321 12568999
Q ss_pred HHHHHHHHHhcCCCCCCCCcceeEEEEEEEeecc
Q 047363 808 SIVSGFQLATASGPLCDEPMWGLAFIVEAYISSN 841 (876)
Q Consensus 808 siv~GFq~at~~GPLceEp~~gv~f~i~d~~~~~ 841 (876)
+|.+||+||+.+||||.|||+||+|.|.++.+|+
T Consensus 63 ai~~G~~~a~~~Gpl~g~pv~~v~v~l~~~~~~~ 96 (120)
T PF03764_consen 63 AIEEGFQSALSSGPLCGYPVTDVKVTLTDGEYHE 96 (120)
T ss_dssp HHHHHHHHHHCSSTTTSSEB-SEEEEEEEEEC-T
T ss_pred HHhhhhhheecccccCCCceEEEEEEEEEeeecC
Confidence 9999999999999999999999999999999987
No 257
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.00 E-value=2.6e-09 Score=115.08 Aligned_cols=116 Identities=24% Similarity=0.223 Sum_probs=81.4
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccc
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDF 87 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF 87 (876)
..++|.|.|++|+|||||+.++... .-.+.+.. ++ |-......+.++..+|.+|||||.-|-
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~A--kpEvA~YP-----FT-----------TK~i~vGhfe~~~~R~QvIDTPGlLDR 228 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTA--KPEVAPYP-----FT-----------TKGIHVGHFERGYLRIQVIDTPGLLDR 228 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcC--CCccCCCC-----cc-----------ccceeEeeeecCCceEEEecCCcccCC
Confidence 5799999999999999999999766 43333221 11 222233577777789999999998774
Q ss_pred --------hHHHHHHHHhc-CeEEEEEcCCCccccchHH---HHHHhh-hhcCCcEEEEeccccccc
Q 047363 88 --------CSEVSTAARLS-DGALVLVDAVEGVHIQTHA---VLRQSW-IEKLTPCLVLNKIDRLIS 141 (876)
Q Consensus 88 --------~~e~~~al~~a-DgaIlVvDa~egv~~~t~~---~l~~~~-~~~ip~ilviNKiD~~~~ 141 (876)
-.....|++.. +.+++++|+++..-...+. +|+... ..+.|+++|+||+|....
T Consensus 229 Pl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~~~~ 295 (346)
T COG1084 229 PLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKIDIADE 295 (346)
T ss_pred ChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCCeEEEEecccccch
Confidence 23466777765 5677889998765443332 455443 345789999999999854
No 258
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=98.99 E-value=1.2e-09 Score=108.17 Aligned_cols=125 Identities=18% Similarity=0.182 Sum_probs=88.5
Q ss_pred CCCCCCCCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEc
Q 047363 1 MGDSDTRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLID 80 (876)
Q Consensus 1 m~~~~~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlID 80 (876)
|..........|.|+|.+|+|||+|+++++........ +. .-|..+-...+.+.-+...+.|||
T Consensus 1 M~~~~K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qy------ka----------TIgadFltKev~Vd~~~vtlQiWD 64 (210)
T KOG0394|consen 1 MSSLRKRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQY------KA----------TIGADFLTKEVQVDDRSVTLQIWD 64 (210)
T ss_pred CCCcCcccceEEEEeCCCCccHHHHHHHHHHHHHHHHh------cc----------ccchhheeeEEEEcCeEEEEEEEe
Confidence 43333456788999999999999999999876211000 00 012222223344444456789999
Q ss_pred CCCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHH-----Hhh---hhcCCcEEEEeccccccc
Q 047363 81 SPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLR-----QSW---IEKLTPCLVLNKIDRLIS 141 (876)
Q Consensus 81 TPGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~-----~~~---~~~ip~ilviNKiD~~~~ 141 (876)
|+|+++|.+--...+|.+|++++|.|....-+......|+ ++. -+.-|+||+.||+|....
T Consensus 65 TAGQERFqsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~ 133 (210)
T KOG0394|consen 65 TAGQERFQSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGG 133 (210)
T ss_pred cccHHHhhhcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCC
Confidence 9999999999999999999999999998766666655554 332 145799999999999763
No 259
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=98.97 E-value=1.7e-09 Score=129.39 Aligned_cols=105 Identities=21% Similarity=0.208 Sum_probs=77.5
Q ss_pred eCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccchHH-----
Q 047363 16 AHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFCSE----- 90 (876)
Q Consensus 16 G~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~~e----- 90 (876)
|.+|+|||||+++|.+. .-.+. ...|+|++.....+.++++.++++||||+.+|...
T Consensus 1 G~pNvGKSSL~N~Ltg~--~~~v~----------------n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~ 62 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGA--NQTVG----------------NWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEE 62 (591)
T ss_pred CCCCCCHHHHHHHHhCC--CCeec----------------CCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHH
Confidence 78999999999999754 21110 13477887777778888899999999999988532
Q ss_pred HHH-H--HHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccc
Q 047363 91 VST-A--ARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 91 ~~~-a--l~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~ 140 (876)
+.+ . .+.+|++++|+|+.+.. .......++.+.++|+++|+||+|+..
T Consensus 63 v~~~~l~~~~aDvvI~VvDat~le--r~l~l~~ql~~~~~PiIIVlNK~Dl~~ 113 (591)
T TIGR00437 63 VARDYLLNEKPDLVVNVVDASNLE--RNLYLTLQLLELGIPMILALNLVDEAE 113 (591)
T ss_pred HHHHHHhhcCCCEEEEEecCCcch--hhHHHHHHHHhcCCCEEEEEehhHHHH
Confidence 222 2 23689999999998632 233445566678999999999999864
No 260
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.97 E-value=4e-10 Score=118.74 Aligned_cols=120 Identities=30% Similarity=0.401 Sum_probs=95.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEE-c--------------
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHY-K-------------- 72 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~-~-------------- 72 (876)
...||+-+||+.|||||++.++.+- - +++ ...|-+|.|||+........ +
T Consensus 37 ATiNIGTIGHVAHGKSTvVkAiSGv-----~------Tvr----FK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s 101 (466)
T KOG0466|consen 37 ATINIGTIGHVAHGKSTVVKAISGV-----H------TVR----FKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRS 101 (466)
T ss_pred eeeeecceeccccCcceeeeeeccc-----e------EEE----ehhhhhcceeEEeccccceEEecCCCCCCCcchhhc
Confidence 3579999999999999999988433 1 222 34678899999877654432 1
Q ss_pred ----------------------CeEEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCcc-ccchHHHHHHhhhhcCCc
Q 047363 73 ----------------------DYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGV-HIQTHAVLRQSWIEKLTP 129 (876)
Q Consensus 73 ----------------------~~~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv-~~~t~~~l~~~~~~~ip~ 129 (876)
-+.+.|+|||||.-+...+..+..+.|+|++++-+.+.. ++||.+.+....-.+++.
T Consensus 102 ~gS~k~d~~~c~~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~Lkh 181 (466)
T KOG0466|consen 102 FGSSKEDRPPCDRPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKLKH 181 (466)
T ss_pred cCCCCCCCCCcccCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhhce
Confidence 156899999999999999999999999999999998865 788988888887788877
Q ss_pred EEEE-ecccccccc
Q 047363 130 CLVL-NKIDRLISE 142 (876)
Q Consensus 130 ilvi-NKiD~~~~e 142 (876)
|+++ ||+|+...+
T Consensus 182 iiilQNKiDli~e~ 195 (466)
T KOG0466|consen 182 IIILQNKIDLIKES 195 (466)
T ss_pred EEEEechhhhhhHH
Confidence 7655 999998643
No 261
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.97 E-value=5.1e-09 Score=99.86 Aligned_cols=118 Identities=19% Similarity=0.234 Sum_probs=85.8
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCcc
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMD 86 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~d 86 (876)
+-...|+++|..|+|||.|+.++... ...+.+ |-. -|+.+....+.+.....++.||||+|+.+
T Consensus 5 kflfkivlvgnagvgktclvrrftqg----lfppgq-gat-----------igvdfmiktvev~gekiklqiwdtagqer 68 (213)
T KOG0095|consen 5 KFLFKIVLVGNAGVGKTCLVRRFTQG----LFPPGQ-GAT-----------IGVDFMIKTVEVNGEKIKLQIWDTAGQER 68 (213)
T ss_pred ceeEEEEEEccCCcCcchhhhhhhcc----CCCCCC-Cce-----------eeeeEEEEEEEECCeEEEEEEeeccchHH
Confidence 45678999999999999999999643 433321 111 13333344455555567899999999999
Q ss_pred chHHHHHHHHhcCeEEEEEcCCCccccchHHH-HHHhhh---hcCCcEEEEecccccc
Q 047363 87 FCSEVSTAARLSDGALVLVDAVEGVHIQTHAV-LRQSWI---EKLTPCLVLNKIDRLI 140 (876)
Q Consensus 87 F~~e~~~al~~aDgaIlVvDa~egv~~~t~~~-l~~~~~---~~ip~ilviNKiD~~~ 140 (876)
|.+-+.++.|.+++.|+|.|.+...+.....- ++...+ .++-.|||.||+|+..
T Consensus 69 frsitqsyyrsahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~d 126 (213)
T KOG0095|consen 69 FRSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLAD 126 (213)
T ss_pred HHHHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhh
Confidence 99999999999999999999987665555433 344333 3455678999999975
No 262
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=98.96 E-value=4e-09 Score=110.32 Aligned_cols=204 Identities=22% Similarity=0.267 Sum_probs=119.3
Q ss_pred CCCceEEEEEeCCCCcHHHHHHHHHHhhCCCCccccc-----C-Cce---eeccChh------h-h-----hhcceeeee
Q 047363 6 TRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKL-----A-GKL---RFMDYLD------E-E-----QRRAITMKS 64 (876)
Q Consensus 6 ~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~-----~-g~~---~~~d~~~------~-E-----~~rgiti~~ 64 (876)
.++-..|.++|..|+||||++.+|....|.....+.. + ..+ .-.|-+. . + ...||....
T Consensus 16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsL 95 (366)
T KOG1532|consen 16 IQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSL 95 (366)
T ss_pred ccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhH
Confidence 3445678899999999999999999886643221100 0 000 0011110 0 0 112333221
Q ss_pred eEEEEEEc-----------CeEEEEEcCCCCccch------HHHHHHHHhc--CeEEEEEcCCCccccch--HHHHHHh-
Q 047363 65 SSIALHYK-----------DYAINLIDSPGHMDFC------SEVSTAARLS--DGALVLVDAVEGVHIQT--HAVLRQS- 122 (876)
Q Consensus 65 ~~i~~~~~-----------~~~inlIDTPGh~dF~------~e~~~al~~a--DgaIlVvDa~egv~~~t--~~~l~~~- 122 (876)
+.....+. .+.+.||||||+++-. .-...++..+ -.++.|||.....++.| ..++..|
T Consensus 96 NLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcS 175 (366)
T KOG1532|consen 96 NLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACS 175 (366)
T ss_pred HHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHH
Confidence 11111111 3679999999998741 1123333332 25778899876655554 2344443
Q ss_pred --hhhcCCcEEEEecccccccccccChHHHHHHHHHHHHH-hhhhhhhccccccccccccccccCccccccccccccccc
Q 047363 123 --WIEKLTPCLVLNKIDRLISELKLTPLEAYNRLLRIVHE-VNGIMSAYKSEKYLSDVDSLLSVPSEKLGDENLQFIEDD 199 (876)
Q Consensus 123 --~~~~ip~ilviNKiD~~~~e~~~~~~~~~~~l~~~l~~-vn~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (876)
-+.++|+|++.||.|....+|.+.+.+-++.++..+++ -+.+.+++.....+. .
T Consensus 176 ilyktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~-----------------------l 232 (366)
T KOG1532|consen 176 ILYKTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLM-----------------------L 232 (366)
T ss_pred HHHhccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHH-----------------------H
Confidence 47789999999999999999999999999999988875 333444332221110 0
Q ss_pred ccccccCCCCcEEEEeccCCCccc-----hHHHHHHHHHhc
Q 047363 200 EEDTFQPQKGNVAFVCGLDGWGFS-----ISEFAEFYATKL 235 (876)
Q Consensus 200 ~~~~f~p~~gnV~f~Sa~~Gw~ft-----l~~fa~~y~~k~ 235 (876)
+. +|+.. .++-+|+..|.||+ +.+-++.|.+.+
T Consensus 233 ee-FY~~l--rtv~VSs~tG~G~ddf~~av~~~vdEy~~~y 270 (366)
T KOG1532|consen 233 EE-FYRSL--RTVGVSSVTGEGFDDFFTAVDESVDEYEEEY 270 (366)
T ss_pred HH-HHhhC--ceEEEecccCCcHHHHHHHHHHHHHHHHHHh
Confidence 11 22222 35678899999987 455566776554
No 263
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.96 E-value=2.2e-09 Score=106.51 Aligned_cols=118 Identities=19% Similarity=0.171 Sum_probs=88.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccc
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDF 87 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF 87 (876)
....+.|+|..|+|||.|+.++...+. .+ ..| ..-|+......+++.-+..++++|||.||+.|
T Consensus 5 ~~fKyIiiGd~gVGKSclllrf~~krF---~~--------~hd-----~TiGvefg~r~~~id~k~IKlqiwDtaGqe~f 68 (216)
T KOG0098|consen 5 YLFKYIIIGDTGVGKSCLLLRFTDKRF---QP--------VHD-----LTIGVEFGARMVTIDGKQIKLQIWDTAGQESF 68 (216)
T ss_pred ceEEEEEECCCCccHHHHHHHHhccCc---cc--------ccc-----ceeeeeeceeEEEEcCceEEEEEEecCCcHHH
Confidence 456788999999999999998876521 11 111 12355555555677677789999999999999
Q ss_pred hHHHHHHHHhcCeEEEEEcCCCccccchHHHH----HHhhhhcCCcEEEEeccccccc
Q 047363 88 CSEVSTAARLSDGALVLVDAVEGVHIQTHAVL----RQSWIEKLTPCLVLNKIDRLIS 141 (876)
Q Consensus 88 ~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l----~~~~~~~ip~ilviNKiD~~~~ 141 (876)
.+-+..+++.+.|||||.|.....+......| ++....++.++|+.||+|+...
T Consensus 69 rsv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~r 126 (216)
T KOG0098|consen 69 RSVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEAR 126 (216)
T ss_pred HHHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhcc
Confidence 99999999999999999999876655554433 2333456788889999999753
No 264
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.94 E-value=1.8e-09 Score=107.91 Aligned_cols=116 Identities=16% Similarity=0.176 Sum_probs=82.9
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccch
Q 047363 9 IRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFC 88 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~ 88 (876)
--.|+++|..++|||||+-++..... .. + .|..-|-.+-+..+.+.-...++.||||.|+.+|.
T Consensus 5 ~~KvvLLG~~~VGKSSlV~Rfvk~~F----~e----------~--~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~ 68 (200)
T KOG0092|consen 5 EFKVVLLGDSGVGKSSLVLRFVKDQF----HE----------N--IEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYH 68 (200)
T ss_pred eEEEEEECCCCCCchhhhhhhhhCcc----cc----------c--cccccccEEEEEEEEeCCcEEEEEEEEcCCccccc
Confidence 45789999999999999999986521 11 0 12222333333334443345788999999999999
Q ss_pred HHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcC-C---cEEEEecccccc
Q 047363 89 SEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKL-T---PCLVLNKIDRLI 140 (876)
Q Consensus 89 ~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~i-p---~ilviNKiD~~~ 140 (876)
+-..-++|.|++||+|+|..+--+.+...-|-.-...+. | +.||.||+|+..
T Consensus 69 slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~ 124 (200)
T KOG0092|consen 69 SLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLE 124 (200)
T ss_pred ccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhh
Confidence 999999999999999999998777766665533333322 3 345889999985
No 265
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.94 E-value=2.7e-09 Score=105.20 Aligned_cols=110 Identities=19% Similarity=0.158 Sum_probs=73.0
Q ss_pred EEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccc----
Q 047363 12 ISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDF---- 87 (876)
Q Consensus 12 I~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF---- 87 (876)
|+++|+.|+|||||++.|.+. .. ... ..+ ..+.|..... +.. ...+.++||||+.+.
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~--~~-~~~-~~~------------~~~~t~~~~~--~~~-~~~~~~~D~~g~~~~~~~~ 62 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNR--KK-LAR-TSK------------TPGKTQLINF--FNV-NDKFRLVDLPGYGYAKVSK 62 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcC--Cc-eee-ecC------------CCCcceeEEE--EEc-cCeEEEecCCCccccccCH
Confidence 799999999999999999843 11 110 001 1122222111 222 238999999997653
Q ss_pred ------hHHHHHHHH---hcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccc
Q 047363 88 ------CSEVSTAAR---LSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 88 ------~~e~~~al~---~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~ 140 (876)
...+...+. .++++++|+|...........+++.+...+.|+++++||+|+..
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~ 124 (170)
T cd01876 63 EVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLK 124 (170)
T ss_pred HHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcCC
Confidence 222233333 45789999999877666666677788888899999999999864
No 266
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=98.93 E-value=2.6e-09 Score=101.91 Aligned_cols=118 Identities=19% Similarity=0.204 Sum_probs=90.5
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccc
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDF 87 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF 87 (876)
+....+|+|.+|+|||+|+-++...|..|.. .. .-|+..+...+.+.....++.||||+|.+.|
T Consensus 7 hLfkllIigDsgVGKssLl~rF~ddtFs~sY--------it--------TiGvDfkirTv~i~G~~VkLqIwDtAGqErF 70 (198)
T KOG0079|consen 7 HLFKLLIIGDSGVGKSSLLLRFADDTFSGSY--------IT--------TIGVDFKIRTVDINGDRVKLQIWDTAGQERF 70 (198)
T ss_pred HHHHHHeecCCcccHHHHHHHHhhcccccce--------EE--------EeeeeEEEEEeecCCcEEEEEEeecccHHHH
Confidence 3455689999999999999988776443321 10 1256666666666666789999999999999
Q ss_pred hHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhh---cCCcEEEEeccccccc
Q 047363 88 CSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIE---KLTPCLVLNKIDRLIS 141 (876)
Q Consensus 88 ~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~---~ip~ilviNKiD~~~~ 141 (876)
...+....+...|+++|.|...|.+.....-|-+-.+. .+|-+||.||.|.+..
T Consensus 71 rtitstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~R 127 (198)
T KOG0079|consen 71 RTITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPER 127 (198)
T ss_pred HHHHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCccccceecccCCCCccc
Confidence 99999999999999999999998877665544333333 5688999999999853
No 267
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=98.92 E-value=6.6e-09 Score=103.64 Aligned_cols=106 Identities=15% Similarity=0.141 Sum_probs=70.4
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccchHH
Q 047363 11 NISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFCSE 90 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~~e 90 (876)
+|+++|+.|+|||||+.+++........ .+. .+ .. ...+.+....+.+.++||+|..+.
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~f~~~~-------------~~~---~~-~~-~~~i~~~~~~~~l~i~D~~g~~~~--- 60 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGSYVQLE-------------SPE---GG-RF-KKEVLVDGQSHLLLIRDEGGAPDA--- 60 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCCCCC-------------CCC---cc-ce-EEEEEECCEEEEEEEEECCCCCch---
Confidence 6999999999999999998754111100 000 01 11 111233223467899999999752
Q ss_pred HHHHHHhcCeEEEEEcCCCccccchH-HHHHHhhh----hcCCcEEEEeccccc
Q 047363 91 VSTAARLSDGALVLVDAVEGVHIQTH-AVLRQSWI----EKLTPCLVLNKIDRL 139 (876)
Q Consensus 91 ~~~al~~aDgaIlVvDa~egv~~~t~-~~l~~~~~----~~ip~ilviNKiD~~ 139 (876)
...+.+|++++|+|..+..+.+.. ..+..+.. .++|+++|.||.|+.
T Consensus 61 --~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~ 112 (158)
T cd04103 61 --QFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAIS 112 (158)
T ss_pred --hHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhh
Confidence 456789999999999987766653 33333332 357999999999975
No 268
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=98.91 E-value=6.7e-09 Score=110.43 Aligned_cols=82 Identities=26% Similarity=0.355 Sum_probs=59.2
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccc---
Q 047363 11 NISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDF--- 87 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF--- 87 (876)
.|+++|.+|+|||||+++|.+. ...+ +.. .+.|.......+.+.+..++++||||+.+.
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~--~~~v-----~~~-----------~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~ 63 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNT--KSEV-----AAY-----------EFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAAD 63 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCC--Cccc-----cCC-----------CCccccceEEEEEECCeEEEEEECCCccccccc
Confidence 5899999999999999999755 2111 110 122333334456678899999999998643
Q ss_pred ----hHHHHHHHHhcCeEEEEEcCCCc
Q 047363 88 ----CSEVSTAARLSDGALVLVDAVEG 110 (876)
Q Consensus 88 ----~~e~~~al~~aDgaIlVvDa~eg 110 (876)
...+..+++.+|++++|+|+.+.
T Consensus 64 ~~~~~~~~l~~~~~ad~il~V~D~t~~ 90 (233)
T cd01896 64 GKGRGRQVIAVARTADLILMVLDATKP 90 (233)
T ss_pred chhHHHHHHHhhccCCEEEEEecCCcc
Confidence 34567789999999999998653
No 269
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.91 E-value=4e-09 Score=101.01 Aligned_cols=118 Identities=18% Similarity=0.157 Sum_probs=91.5
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCcc
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMD 86 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~d 86 (876)
+-.-.+.++|+.|.|||.|+.+++...+. |. ....-|+.+.+..+++-.+..++.||||+|+..
T Consensus 7 DyLfKfl~iG~aGtGKSCLLh~Fie~kfk--------------Dd--ssHTiGveFgSrIinVGgK~vKLQIWDTAGQEr 70 (214)
T KOG0086|consen 7 DYLFKFLVIGSAGTGKSCLLHQFIENKFK--------------DD--SSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQER 70 (214)
T ss_pred hhhheeEEeccCCCChhHHHHHHHHhhhc--------------cc--ccceeeeeecceeeeecCcEEEEEEeecccHHH
Confidence 44678999999999999999999987211 11 011237777777788877888999999999999
Q ss_pred chHHHHHHHHhcCeEEEEEcCCCccccchHHHH----HHhhhhcCCcEEEEecccccc
Q 047363 87 FCSEVSTAARLSDGALVLVDAVEGVHIQTHAVL----RQSWIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 87 F~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l----~~~~~~~ip~ilviNKiD~~~ 140 (876)
|..-+..++|.+-||++|.|+....+.....-| +.+...++-+||+.||-|+..
T Consensus 71 FRSVtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~ 128 (214)
T KOG0086|consen 71 FRSVTRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDP 128 (214)
T ss_pred HHHHHHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcCh
Confidence 999999999999999999999876665554444 223344666778889999864
No 270
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.88 E-value=9.3e-09 Score=106.42 Aligned_cols=115 Identities=17% Similarity=0.111 Sum_probs=70.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEc-CeEEEEEcCCCCccch
Q 047363 10 RNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYK-DYAINLIDSPGHMDFC 88 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~-~~~inlIDTPGh~dF~ 88 (876)
.+|+++|.+|+|||||+++|++..+.. .+... .... ..|.... .+... ...+.+|||||..+..
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~------~~~~~-~~~~------~~t~~~~--~~~~~~~~~l~l~DtpG~~~~~ 66 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEE------EGAAP-TGVV------ETTMKRT--PYPHPKFPNVTLWDLPGIGSTA 66 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCC------CCccc-cCcc------ccccCce--eeecCCCCCceEEeCCCCCccc
Confidence 369999999999999999998751110 01110 0000 0111111 11111 2478999999986542
Q ss_pred HHHHH-----HHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEeccccccc
Q 047363 89 SEVST-----AARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLIS 141 (876)
Q Consensus 89 ~e~~~-----al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~~ 141 (876)
..... .+..+|.+++|.| +........+++.+.+.+.|+++|+||+|+...
T Consensus 67 ~~~~~~l~~~~~~~~d~~l~v~~--~~~~~~d~~~~~~l~~~~~~~ilV~nK~D~~~~ 122 (197)
T cd04104 67 FPPDDYLEEMKFSEYDFFIIISS--TRFSSNDVKLAKAIQCMGKKFYFVRTKVDRDLS 122 (197)
T ss_pred CCHHHHHHHhCccCcCEEEEEeC--CCCCHHHHHHHHHHHHhCCCEEEEEecccchhh
Confidence 22222 2456788777754 345555566777777788999999999999653
No 271
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=98.88 E-value=5.8e-09 Score=101.53 Aligned_cols=112 Identities=22% Similarity=0.256 Sum_probs=85.3
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccc
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDF 87 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF 87 (876)
+--.|-|+|..|+||||++.+|... . .......+|..| -++.++++.++++|.-|+..+
T Consensus 15 rE~riLiLGLdNsGKTti~~kl~~~--~---------------~~~i~pt~gf~I----ktl~~~~~~L~iwDvGGq~~l 73 (185)
T KOG0073|consen 15 REVRILILGLDNSGKTTIVKKLLGE--D---------------TDTISPTLGFQI----KTLEYKGYTLNIWDVGGQKTL 73 (185)
T ss_pred heeEEEEEecCCCCchhHHHHhcCC--C---------------ccccCCccceee----EEEEecceEEEEEEcCCcchh
Confidence 3456889999999999999999765 1 111112234444 477889999999999999999
Q ss_pred hHHHHHHHHhcCeEEEEEcCCCccccc-hHHHHHHh----hhhcCCcEEEEecccccc
Q 047363 88 CSEVSTAARLSDGALVLVDAVEGVHIQ-THAVLRQS----WIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 88 ~~e~~~al~~aDgaIlVvDa~egv~~~-t~~~l~~~----~~~~ip~ilviNKiD~~~ 140 (876)
..-+..++..+||.|.|||..+....+ +...++.+ +..+.|++++.||.|...
T Consensus 74 r~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~ 131 (185)
T KOG0073|consen 74 RSYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPG 131 (185)
T ss_pred HHHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCcc
Confidence 999999999999999999998765433 23333332 345679999999999985
No 272
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=98.88 E-value=5.3e-09 Score=107.00 Aligned_cols=114 Identities=13% Similarity=0.058 Sum_probs=71.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccchH
Q 047363 10 RNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFCS 89 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~~ 89 (876)
.+|+|+|+.|+|||||+++|... ........ +.. .... ..+.+......++++||||+..|..
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~----~~~~~~~~--t~~----------~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~ 64 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLG----EFPEEYHP--TVF----------ENYV-TDCRVDGKPVQLALWDTAGQEEYER 64 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhC----CCCcccCC--ccc----------ceEE-EEEEECCEEEEEEEEECCCChhccc
Confidence 47999999999999999999744 11110000 000 0000 1112222235688999999988865
Q ss_pred HHHHHHHhcCeEEEEEcCCCccccchHH-HH-HHhhh--hcCCcEEEEecccccc
Q 047363 90 EVSTAARLSDGALVLVDAVEGVHIQTHA-VL-RQSWI--EKLTPCLVLNKIDRLI 140 (876)
Q Consensus 90 e~~~al~~aDgaIlVvDa~egv~~~t~~-~l-~~~~~--~~ip~ilviNKiD~~~ 140 (876)
.....++.+|++|+|+|.......+... .| ..+.. ..+|+++|+||+|+..
T Consensus 65 ~~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~ 119 (187)
T cd04129 65 LRPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQ 119 (187)
T ss_pred cchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhh
Confidence 5556778999999999987554333221 22 22222 2689999999999853
No 273
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=98.84 E-value=1.2e-08 Score=106.51 Aligned_cols=115 Identities=22% Similarity=0.200 Sum_probs=77.5
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEc-CeEEEEEcCCCCccch
Q 047363 10 RNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYK-DYAINLIDSPGHMDFC 88 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~-~~~inlIDTPGh~dF~ 88 (876)
..|+++|..|+|||||+.+|.+....-...+ + .+..+ .+....... ..++.+|||+|+.+|.
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~------t----------~~~~~-~~~~~~~~~~~~~~~~~Dt~gq~~~~ 68 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPP------T----------IGNLD-PAKTIEPYRRNIKLQLWDTAGQEEYR 68 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCC------c----------eeeee-EEEEEEeCCCEEEEEeecCCCHHHHH
Confidence 7899999999999999999987611100000 0 01111 111111111 4668999999999999
Q ss_pred HHHHHHHHhcCeEEEEEcCCCcc-ccch-HHHHHHhhh---hcCCcEEEEeccccccc
Q 047363 89 SEVSTAARLSDGALVLVDAVEGV-HIQT-HAVLRQSWI---EKLTPCLVLNKIDRLIS 141 (876)
Q Consensus 89 ~e~~~al~~aDgaIlVvDa~egv-~~~t-~~~l~~~~~---~~ip~ilviNKiD~~~~ 141 (876)
.-+....+.++++++|+|..... .... +.....+.. .+.|+++|.||+|+...
T Consensus 69 ~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~ 126 (219)
T COG1100 69 SLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDE 126 (219)
T ss_pred HHHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccc
Confidence 99999999999999999998522 2222 333334333 25899999999999864
No 274
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.82 E-value=9.9e-09 Score=104.11 Aligned_cols=118 Identities=18% Similarity=0.178 Sum_probs=90.7
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCcc
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMD 86 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~d 86 (876)
+....|+++|.+++|||-|+.++..... .+..+ ..-|+.+....+.+..+-.+..||||+|+.+
T Consensus 12 dylFKiVliGDS~VGKsnLlsRftrnEF--~~~Sk--------------sTIGvef~t~t~~vd~k~vkaqIWDTAGQER 75 (222)
T KOG0087|consen 12 DYLFKIVLIGDSAVGKSNLLSRFTRNEF--SLESK--------------STIGVEFATRTVNVDGKTVKAQIWDTAGQER 75 (222)
T ss_pred ceEEEEEEeCCCccchhHHHHHhccccc--Ccccc--------------cceeEEEEeeceeecCcEEEEeeecccchhh
Confidence 4568899999999999999999976511 11110 1236677666677777778899999999999
Q ss_pred chHHHHHHHHhcCeEEEEEcCCCccccchHH-HHHHhhh---hcCCcEEEEecccccc
Q 047363 87 FCSEVSTAARLSDGALVLVDAVEGVHIQTHA-VLRQSWI---EKLTPCLVLNKIDRLI 140 (876)
Q Consensus 87 F~~e~~~al~~aDgaIlVvDa~egv~~~t~~-~l~~~~~---~~ip~ilviNKiD~~~ 140 (876)
|..-+.++.|.|-||++|.|.+...+.+... -+++++. .+++++||.||+|+..
T Consensus 76 yrAitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~ 133 (222)
T KOG0087|consen 76 YRAITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNH 133 (222)
T ss_pred hccccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhh
Confidence 9999999999999999999998776655433 3344443 4789999999999974
No 275
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=98.82 E-value=2.1e-08 Score=103.73 Aligned_cols=67 Identities=18% Similarity=0.100 Sum_probs=49.0
Q ss_pred cCeEEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCccccchH-HHHH-Hhhh--hcCCcEEEEecccccc
Q 047363 72 KDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTH-AVLR-QSWI--EKLTPCLVLNKIDRLI 140 (876)
Q Consensus 72 ~~~~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~-~~l~-~~~~--~~ip~ilviNKiD~~~ 140 (876)
..+.++||||+|..+. ....+++.+|++|+|+|..+..+.... ..|. .+.. .++|++||+||+|+..
T Consensus 64 ~~v~l~iwDTaG~~~~--~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~ 134 (195)
T cd01873 64 VSVSLRLWDTFGDHDK--DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRY 134 (195)
T ss_pred EEEEEEEEeCCCChhh--hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccc
Confidence 3578999999998763 334578899999999999876655443 2342 2222 3689999999999864
No 276
>PF03144 GTP_EFTU_D2: Elongation factor Tu domain 2; InterPro: IPR004161 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents domain 2 of EF2, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA []. This domain is structurally related to the C-terminal domain of EF2 (IPR004160 from INTERPRO), to which it displays weak sequence matches. This domain is also found in other proteins such as translation initiation factor IF-2 and tetracycline-resistance proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3MCA_A 3AGJ_E 1SKQ_B 1JNY_A 1S0U_A 1ZUN_B 3SFS_W 3UOQ_W 2H5E_B 2XEX_A ....
Probab=98.81 E-value=3.5e-09 Score=91.72 Aligned_cols=73 Identities=36% Similarity=0.497 Sum_probs=62.8
Q ss_pred eEEEEEEEeCccCCCCEEEEeccccCCcchhhhccccceeEEeEEEEecCCceeecceeeCCCeEEEecCCceeecccee
Q 047363 439 FLAFARIFSGVLYSGQRVFVLSALYDPLKVESMQKHIQEAELQSLYLMMGQGLKPVASAKAGNVVAIRGLGQQILKSATL 518 (876)
Q Consensus 439 ~iaf~RV~SGtL~~G~~v~vlg~~y~~~~~~~~~~~~~~~~I~~L~l~~G~~~~~v~~v~AGnIv~I~GL~~~i~k~~Tl 518 (876)
.++++|||||+|++||+|++++ ..+.... ...+|.+|+.+++...++++.+.||+++++.|+++.+..|+||
T Consensus 2 ~v~~grV~sG~l~~gd~v~~~~-~~~~~~~-------~~~~I~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~i~~Gdtl 73 (74)
T PF03144_consen 2 RVATGRVYSGTLKKGDKVRVLP-NGTGKKG-------QVVKIKSIFMFNGDVQEAVAGANAGDIVAIIGLNDAIRRGDTL 73 (74)
T ss_dssp EEEEEEEEESEEETTEEEEEES-TTTTEEC-------EEEEEEEEEETTEEESEEETTEEEEEEEESSSGCSCSSTTEEE
T ss_pred EEEEEEEEEeEEcCCCEEEECc-cCCccee-------eeeecccccccccCccEeCCceeeEEEEEEcCCCCCcCcCCEE
Confidence 4899999999999999999986 4333211 2489999999999999999999999999999999866889998
Q ss_pred c
Q 047363 519 S 519 (876)
Q Consensus 519 ~ 519 (876)
|
T Consensus 74 ~ 74 (74)
T PF03144_consen 74 T 74 (74)
T ss_dssp E
T ss_pred C
Confidence 5
No 277
>cd01680 EFG_like_IV Elongation Factor G-like domain IV. This family includes the translational elongation factor termed EF-2 (for Archaea and Eukarya) and EF-G (for Bacteria), ribosomal protection proteins that mediate tetracycline resistance and, an evolutionarily conserved U5 snRNP-specific protein (U5-116kD). In complex with GTP, EF-G/EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site of the small subunit of ribosome and the mRNA is shifted one codon relative to the ribosome. It has been shown that EF-G/EF-2_IV domain mimics the shape of anticodon arm of the tRNA in the structurally homologous ternary complex of Petra, EF-Tu (another transcriptional elongation factor) and GTP analog. The tip portion of this domain is found in a position that overlaps the anticodon arm of the A-site tRNA, implying that EF-G/EF-2 displaces the A-site tRNA to the P-site by physical interaction with the anticodon arm.
Probab=98.80 E-value=1.5e-08 Score=95.69 Aligned_cols=40 Identities=25% Similarity=0.273 Sum_probs=37.3
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCCcceeEEEEEEEeeccc
Q 047363 803 QSLESSIVSGFQLATASGPLCDEPMWGLAFIVEAYISSNF 842 (876)
Q Consensus 803 ~~~~~siv~GFq~at~~GPLceEp~~gv~f~i~d~~~~~~ 842 (876)
.++.++|..||++|+++||||.+||+||+|.|.++.+|+.
T Consensus 54 ~~~~~ai~~g~~~a~~~Gpl~g~pv~~v~v~l~~~~~~~~ 93 (116)
T cd01680 54 AELKEAVEEGIRDACASGPLTGYPLTDVRVTVLDVPYHEG 93 (116)
T ss_pred HHHHHHHHHHHHHHHhcCcccCCceeeEEEEEEEEEecCC
Confidence 5799999999999999999999999999999999988754
No 278
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.77 E-value=3.3e-08 Score=94.41 Aligned_cols=117 Identities=15% Similarity=0.124 Sum_probs=87.0
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccc
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDF 87 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF 87 (876)
-+-.+.|+|...+|||+++-+.+..+.... +. ..-||..+...+.-.-+..++.+|||.|++.+
T Consensus 20 ymfKlliiGnssvGKTSfl~ry~ddSFt~a----------fv------sTvGidFKvKTvyr~~kRiklQiwDTagqEry 83 (193)
T KOG0093|consen 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSA----------FV------STVGIDFKVKTVYRSDKRIKLQIWDTAGQERY 83 (193)
T ss_pred ceeeEEEEccCCccchhhhHHhhccccccc----------ee------eeeeeeEEEeEeeecccEEEEEEEecccchhh
Confidence 356899999999999999988876622111 11 12366666654433334578999999999999
Q ss_pred hHHHHHHHHhcCeEEEEEcCCCccccchHHHHH----HhhhhcCCcEEEEecccccc
Q 047363 88 CSEVSTAARLSDGALVLVDAVEGVHIQTHAVLR----QSWIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 88 ~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~----~~~~~~ip~ilviNKiD~~~ 140 (876)
..-+...+|.++|.|++.|.....+....+-|- ..-..+.|+|||.||+|+..
T Consensus 84 rtiTTayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~ 140 (193)
T KOG0093|consen 84 RTITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDS 140 (193)
T ss_pred hHHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCcc
Confidence 999999999999999999998766555444332 22345889999999999975
No 279
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=98.76 E-value=6.2e-08 Score=113.66 Aligned_cols=111 Identities=24% Similarity=0.282 Sum_probs=83.9
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccch-
Q 047363 10 RNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFC- 88 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~- 88 (876)
..||++|++|+|||||.|+|++. +..+ | . =.|.|++-....+.++++.+.++|.||..++.
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~--~q~V-----g-----N------wpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~ 65 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGA--NQKV-----G-----N------WPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTA 65 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhcc--Ccee-----c-----C------CCCeeEEEEEEEEEecCceEEEEeCCCcCCCCC
Confidence 45999999999999999999776 3222 1 1 13889999999999999999999999988763
Q ss_pred ---HH--HHHHHH--hcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccc
Q 047363 89 ---SE--VSTAAR--LSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 89 ---~e--~~~al~--~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~ 140 (876)
+| +...+. ..|.+|-|+||+. -.....+.-|+.+.++|+++++|++|...
T Consensus 66 ~S~DE~Var~~ll~~~~D~ivnVvDAtn--LeRnLyltlQLlE~g~p~ilaLNm~D~A~ 122 (653)
T COG0370 66 YSEDEKVARDFLLEGKPDLIVNVVDATN--LERNLYLTLQLLELGIPMILALNMIDEAK 122 (653)
T ss_pred CCchHHHHHHHHhcCCCCEEEEEcccch--HHHHHHHHHHHHHcCCCeEEEeccHhhHH
Confidence 12 233332 3599999999973 11222334567789999999999999874
No 280
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.75 E-value=2.9e-08 Score=106.28 Aligned_cols=117 Identities=22% Similarity=0.327 Sum_probs=83.3
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeE-EEEEcCCCCcc
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYA-INLIDSPGHMD 86 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~-inlIDTPGh~d 86 (876)
.|-+|++||.+|+|||||+++|... .-.+ +...++ |+.....++.++++. +.+-|.||.+.
T Consensus 195 siadvGLVG~PNAGKSTLL~als~A--KpkV-----a~YaFT-----------TL~P~iG~v~yddf~q~tVADiPGiI~ 256 (366)
T KOG1489|consen 195 SIADVGLVGFPNAGKSTLLNALSRA--KPKV-----AHYAFT-----------TLRPHIGTVNYDDFSQITVADIPGIIE 256 (366)
T ss_pred eecccceecCCCCcHHHHHHHhhcc--CCcc-----ccccee-----------eeccccceeeccccceeEeccCccccc
Confidence 3678999999999999999999876 3222 222222 566666677777766 99999999664
Q ss_pred -------chHHHHHHHHhcCeEEEEEcCCCc---cccc-hHHHHHHhhh-----hcCCcEEEEecccccccc
Q 047363 87 -------FCSEVSTAARLSDGALVLVDAVEG---VHIQ-THAVLRQSWI-----EKLTPCLVLNKIDRLISE 142 (876)
Q Consensus 87 -------F~~e~~~al~~aDgaIlVvDa~eg---v~~~-t~~~l~~~~~-----~~ip~ilviNKiD~~~~e 142 (876)
.--+..+-+..|++.++|||...+ --.+ ...++..+.. ...|.++|+||+|.+.++
T Consensus 257 GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae 328 (366)
T KOG1489|consen 257 GAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAE 328 (366)
T ss_pred cccccCcccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHH
Confidence 234567778889999999999876 2222 2334444432 356899999999997543
No 281
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.74 E-value=1.6e-07 Score=100.71 Aligned_cols=119 Identities=13% Similarity=0.160 Sum_probs=73.1
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCcc
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMD 86 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~d 86 (876)
..-.+|+++|.+|+|||||+|+|++. ...... +. .+.|.........+.+..+++|||||..+
T Consensus 29 ~~~~~IllvG~tGvGKSSliNaLlg~--~~~~v~---------~~------~~~T~~~~~~~~~~~g~~i~vIDTPGl~~ 91 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFGE--RKAATS---------AF------QSETLRVREVSGTVDGFKLNIIDTPGLLE 91 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCC--CCcccC---------CC------CCceEEEEEEEEEECCeEEEEEECCCcCc
Confidence 34579999999999999999999876 221110 11 11233333445567789999999999887
Q ss_pred chH------H----HHHHHH--hcCeEEEEEcCCC-ccccchHHHHHHhhh-hc----CCcEEEEecccccccc
Q 047363 87 FCS------E----VSTAAR--LSDGALVLVDAVE-GVHIQTHAVLRQSWI-EK----LTPCLVLNKIDRLISE 142 (876)
Q Consensus 87 F~~------e----~~~al~--~aDgaIlVvDa~e-gv~~~t~~~l~~~~~-~~----ip~ilviNKiD~~~~e 142 (876)
... . +..++. ..|++++|..... ........+++.+.+ .+ .++++|+||.|....+
T Consensus 92 ~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~ 165 (249)
T cd01853 92 SVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPPD 165 (249)
T ss_pred chhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCCC
Confidence 731 1 222222 3567666654332 223333445554432 22 4789999999997443
No 282
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=98.73 E-value=1.7e-08 Score=104.43 Aligned_cols=115 Identities=17% Similarity=0.175 Sum_probs=83.2
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccch
Q 047363 9 IRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFC 88 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~ 88 (876)
-.+|+++|..|+|||+|+-+++....-+. |..+.+ +.....+.+....+.+.|+||+|..+|.
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~~----------y~ptie-------d~y~k~~~v~~~~~~l~ilDt~g~~~~~ 65 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRFVED----------YDPTIE-------DSYRKELTVDGEVCMLEILDTAGQEEFS 65 (196)
T ss_pred ceEEEEECCCCCCcchheeeecccccccc----------cCCCcc-------ccceEEEEECCEEEEEEEEcCCCcccCh
Confidence 46899999999999999999987622111 111111 1122233444445778899999999999
Q ss_pred HHHHHHHHhcCeEEEEEcCCCccccchHHHHH-Hh----hhhcCCcEEEEecccccc
Q 047363 89 SEVSTAARLSDGALVLVDAVEGVHIQTHAVLR-QS----WIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 89 ~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~-~~----~~~~ip~ilviNKiD~~~ 140 (876)
.....+++.+||.++|++..+-.+.+...-++ ++ ....+|++||.||.|+..
T Consensus 66 ~~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~ 122 (196)
T KOG0395|consen 66 AMRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLER 122 (196)
T ss_pred HHHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchh
Confidence 99999999999999999999877665543322 22 345689999999999975
No 283
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=98.68 E-value=7.6e-08 Score=108.41 Aligned_cols=110 Identities=18% Similarity=0.202 Sum_probs=82.9
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccc--
Q 047363 10 RNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDF-- 87 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF-- 87 (876)
.+|+|+|.+|+|||||+|+|.+. ...|..... |.|.++-...+..+++.+.|+||+|...=
T Consensus 269 l~iaIvGrPNvGKSSLlNaL~~~--drsIVSpv~---------------GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~ 331 (531)
T KOG1191|consen 269 LQIAIVGRPNVGKSSLLNALSRE--DRSIVSPVP---------------GTTRDAIEAQVTVNGVPVRLSDTAGIREESN 331 (531)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcC--CceEeCCCC---------------CcchhhheeEeecCCeEEEEEeccccccccC
Confidence 68999999999999999999988 655554444 44555555677788999999999998761
Q ss_pred -------hHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecc
Q 047363 88 -------CSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKI 136 (876)
Q Consensus 88 -------~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKi 136 (876)
......++..+|.+++|||+.++...+...+.+.+...+.-...+.||+
T Consensus 332 ~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~ 387 (531)
T KOG1191|consen 332 DGIEALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKM 387 (531)
T ss_pred ChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccc
Confidence 3346778889999999999998877777666666655544333343443
No 284
>COG3596 Predicted GTPase [General function prediction only]
Probab=98.65 E-value=3.8e-07 Score=96.63 Aligned_cols=117 Identities=20% Similarity=0.150 Sum_probs=82.0
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCcc-
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMD- 86 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~d- 86 (876)
.--||.|+|..|+|||||+|+|... ........ .....+... .-..+....++||||||..|
T Consensus 38 ~pvnvLi~G~TG~GKSSliNALF~~--~~~~v~~v-----g~~t~~~~~----------~~~~~~~~~l~lwDtPG~gdg 100 (296)
T COG3596 38 EPVNVLLMGATGAGKSSLINALFQG--EVKEVSKV-----GVGTDITTR----------LRLSYDGENLVLWDTPGLGDG 100 (296)
T ss_pred CceeEEEecCCCCcHHHHHHHHHhc--cCceeeec-----ccCCCchhh----------HHhhccccceEEecCCCcccc
Confidence 3467889999999999999999964 22111100 001111100 01123457899999999887
Q ss_pred ------chHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhh--cCCcEEEEeccccccc
Q 047363 87 ------FCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIE--KLTPCLVLNKIDRLIS 141 (876)
Q Consensus 87 ------F~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~--~ip~ilviNKiD~~~~ 141 (876)
+.......+...|.+++++|+.+..-...+..|+..... +.|.++++|..|+...
T Consensus 101 ~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p 163 (296)
T COG3596 101 KDKDAEHRQLYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRAEP 163 (296)
T ss_pred hhhhHHHHHHHHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhhhhcc
Confidence 455578888889999999999887777778888876543 3689999999999754
No 285
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=98.62 E-value=2.5e-08 Score=95.27 Aligned_cols=111 Identities=22% Similarity=0.219 Sum_probs=78.5
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccchHH
Q 047363 11 NISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFCSE 90 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~~e 90 (876)
.+.++|-.++|||||++..... . ... ++ -..+|..+ ..+.-....+-++|.||+..|...
T Consensus 22 el~lvGLq~sGKtt~Vn~ia~g--~--~~e-------dm-----iptvGfnm----rk~tkgnvtiklwD~gGq~rfrsm 81 (186)
T KOG0075|consen 22 ELSLVGLQNSGKTTLVNVIARG--Q--YLE-------DM-----IPTVGFNM----RKVTKGNVTIKLWDLGGQPRFRSM 81 (186)
T ss_pred eEEEEeeccCCcceEEEEEeec--c--chh-------hh-----ccccccee----EEeccCceEEEEEecCCCccHHHH
Confidence 4789999999999999876532 1 110 00 01223322 233334678899999999999999
Q ss_pred HHHHHHhcCeEEEEEcCCCcccc-ch----HHHHHHhhhhcCCcEEEEeccccccc
Q 047363 91 VSTAARLSDGALVLVDAVEGVHI-QT----HAVLRQSWIEKLTPCLVLNKIDRLIS 141 (876)
Q Consensus 91 ~~~al~~aDgaIlVvDa~egv~~-~t----~~~l~~~~~~~ip~ilviNKiD~~~~ 141 (876)
..++.|.+++++.|||+.+.-.. .. ..++....-.++|+++..||+|++++
T Consensus 82 WerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~A 137 (186)
T KOG0075|consen 82 WERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGA 137 (186)
T ss_pred HHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCccc
Confidence 99999999999999999974321 11 22333334568999999999999975
No 286
>COG2262 HflX GTPases [General function prediction only]
Probab=98.61 E-value=1.6e-07 Score=104.40 Aligned_cols=118 Identities=22% Similarity=0.239 Sum_probs=78.6
Q ss_pred CCCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEc-CeEEEEEcCCCC
Q 047363 6 TRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYK-DYAINLIDSPGH 84 (876)
Q Consensus 6 ~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~-~~~inlIDTPGh 84 (876)
...+..|+++|..|+|||||+|+|+.. ....... -++ |..+..-.+.+. +..+.+-||-|+
T Consensus 189 ~~~~p~vaLvGYTNAGKSTL~N~LT~~---~~~~~d~--LFA-------------TLdpttR~~~l~~g~~vlLtDTVGF 250 (411)
T COG2262 189 RSGIPLVALVGYTNAGKSTLFNALTGA---DVYVADQ--LFA-------------TLDPTTRRIELGDGRKVLLTDTVGF 250 (411)
T ss_pred ccCCCeEEEEeeccccHHHHHHHHhcc---Ceecccc--ccc-------------cccCceeEEEeCCCceEEEecCccC
Confidence 356889999999999999999999754 2221100 011 222222233333 689999999997
Q ss_pred ccc--------hHHHHHHHHhcCeEEEEEcCCCccc-cchH---HHHHHhhhhcCCcEEEEeccccccc
Q 047363 85 MDF--------CSEVSTAARLSDGALVLVDAVEGVH-IQTH---AVLRQSWIEKLTPCLVLNKIDRLIS 141 (876)
Q Consensus 85 ~dF--------~~e~~~al~~aDgaIlVvDa~egv~-~~t~---~~l~~~~~~~ip~ilviNKiD~~~~ 141 (876)
++- ...+......+|.++.|||+++... .+.. .++..+....+|+|+|+||+|+...
T Consensus 251 I~~LP~~LV~AFksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~ 319 (411)
T COG2262 251 IRDLPHPLVEAFKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLED 319 (411)
T ss_pred cccCChHHHHHHHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCc
Confidence 753 2335555677899999999998732 2223 3444444456899999999998753
No 287
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=98.60 E-value=4.1e-08 Score=94.76 Aligned_cols=116 Identities=21% Similarity=0.167 Sum_probs=83.3
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccch
Q 047363 9 IRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFC 88 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~ 88 (876)
-..|+++|..=+|||||+-++....++ .++ +..+ .-++.+.-+++......++||||+|+..|.
T Consensus 13 ~FK~VLLGEGCVGKtSLVLRy~EnkFn----~kH---lsTl---------QASF~~kk~n~ed~ra~L~IWDTAGQErfH 76 (218)
T KOG0088|consen 13 KFKIVLLGEGCVGKTSLVLRYVENKFN----CKH---LSTL---------QASFQNKKVNVEDCRADLHIWDTAGQERFH 76 (218)
T ss_pred eeEEEEEcCCccchhHHHHHHHHhhcc----hhh---HHHH---------HHHHhhcccccccceeeeeeeeccchHhhh
Confidence 367899999999999999888776211 100 0000 001112223333445789999999999999
Q ss_pred HHHHHHHHhcCeEEEEEcCCCccccchHHHH----HHhhhhcCCcEEEEecccccc
Q 047363 89 SEVSTAARLSDGALVLVDAVEGVHIQTHAVL----RQSWIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 89 ~e~~~al~~aDgaIlVvDa~egv~~~t~~~l----~~~~~~~ip~ilviNKiD~~~ 140 (876)
.--..++|.++||++|+|.++..+.|-..-| +.+.-..+-.++|.||+|+..
T Consensus 77 ALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEe 132 (218)
T KOG0088|consen 77 ALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEE 132 (218)
T ss_pred ccCceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHH
Confidence 9888999999999999999998888776544 444455678889999999874
No 288
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.60 E-value=5.4e-08 Score=97.20 Aligned_cols=123 Identities=19% Similarity=0.155 Sum_probs=89.7
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccc
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDF 87 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF 87 (876)
.-..|.++|--++||||++..|-.. .+.. . --|+..+.-.+.+++..+.+||.-|+..+
T Consensus 16 ~e~~IlmlGLD~AGKTTILykLk~~----E~vt----------t-------vPTiGfnVE~v~ykn~~f~vWDvGGq~k~ 74 (181)
T KOG0070|consen 16 KEMRILMVGLDAAGKTTILYKLKLG----EIVT----------T-------VPTIGFNVETVEYKNISFTVWDVGGQEKL 74 (181)
T ss_pred ceEEEEEEeccCCCceeeeEeeccC----Cccc----------C-------CCccccceeEEEEcceEEEEEecCCCccc
Confidence 3467999999999999998777432 1110 0 12555666678888999999999999999
Q ss_pred hHHHHHHHHhcCeEEEEEcCCCccc--cchHHHHHHhh---hhcCCcEEEEecccccccccccChHHHHHHH
Q 047363 88 CSEVSTAARLSDGALVLVDAVEGVH--IQTHAVLRQSW---IEKLTPCLVLNKIDRLISELKLTPLEAYNRL 154 (876)
Q Consensus 88 ~~e~~~al~~aDgaIlVvDa~egv~--~~t~~~l~~~~---~~~ip~ilviNKiD~~~~e~~~~~~~~~~~l 154 (876)
..-...+++..+++|+|||+.+... ..-+++.+... -.+.|++++.||.|.+++ +++.++-++|
T Consensus 75 R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~a---ls~~ei~~~L 143 (181)
T KOG0070|consen 75 RPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGA---LSAAEITNKL 143 (181)
T ss_pred ccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhcccc---CCHHHHHhHh
Confidence 9999999999999999999987542 21223333332 247899999999999875 4455544443
No 289
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=98.59 E-value=3.1e-07 Score=97.14 Aligned_cols=116 Identities=16% Similarity=0.208 Sum_probs=72.0
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEc-CeEEEEEcCCCCccchH
Q 047363 11 NISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYK-DYAINLIDSPGHMDFCS 89 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~-~~~inlIDTPGh~dF~~ 89 (876)
.|.++|+.++||||+..-+.+. . .+. | ...-|.|++.....+.+. ...+++||+||+.+|..
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~--~---~p~--------d----T~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~ 63 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHK--Y---SPR--------D----TLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFME 63 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS--------GG--------G----GGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTH
T ss_pred CEEEEcCCCCChhhHHHHHHcC--C---Cch--------h----ccccCCcCCceEEEEecCCCcEEEEEEcCCcccccc
Confidence 4789999999999999888755 1 110 1 112244555554555433 45999999999998866
Q ss_pred H-----HHHHHHhcCeEEEEEcCCCccccch----HHHHHHhhhh--cCCcEEEEeccccccccc
Q 047363 90 E-----VSTAARLSDGALVLVDAVEGVHIQT----HAVLRQSWIE--KLTPCLVLNKIDRLISEL 143 (876)
Q Consensus 90 e-----~~~al~~aDgaIlVvDa~egv~~~t----~~~l~~~~~~--~ip~ilviNKiD~~~~e~ 143 (876)
. ...-++.+++.|+|+|+........ ...+..+.+. ++.+.+++.|+|.+..+.
T Consensus 64 ~~~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~ 128 (232)
T PF04670_consen 64 NYFNSQREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDE 128 (232)
T ss_dssp TTHTCCHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHH
T ss_pred ccccccHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHH
Confidence 5 5777899999999999983321111 2234444433 567788999999986553
No 290
>PRK09866 hypothetical protein; Provisional
Probab=98.59 E-value=4.6e-07 Score=106.05 Aligned_cols=68 Identities=16% Similarity=0.208 Sum_probs=56.5
Q ss_pred CeEEEEEcCCCCcc-----chHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhc--CCcEEEEecccccc
Q 047363 73 DYAINLIDSPGHMD-----FCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEK--LTPCLVLNKIDRLI 140 (876)
Q Consensus 73 ~~~inlIDTPGh~d-----F~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~--ip~ilviNKiD~~~ 140 (876)
...+.|+||||... +...+..++..+|.+++|||+..+.....+.+++.+.+.+ .|+++|+||+|+..
T Consensus 229 ~~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~d 303 (741)
T PRK09866 229 PGQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQD 303 (741)
T ss_pred cCCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCCC
Confidence 36799999999643 3446778999999999999999887777778888877776 49999999999863
No 291
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.59 E-value=2.8e-07 Score=98.01 Aligned_cols=134 Identities=16% Similarity=0.223 Sum_probs=85.6
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhh----CCCCccccc-------CCc-----ee-----eccChh--hh----hh---
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAAT----GGGLLHPKL-------AGK-----LR-----FMDYLD--EE----QR--- 57 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t----~~g~i~~~~-------~g~-----~~-----~~d~~~--~E----~~--- 57 (876)
..+.|+++|+.++||||++++|.+.. +.|.+++.. ... .. +.|... .+ ..
T Consensus 25 ~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 104 (240)
T smart00053 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRVT 104 (240)
T ss_pred CCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHhc
Confidence 46789999999999999999998751 123333110 000 00 011111 00 11
Q ss_pred -cceeeeeeEEEEEEc---CeEEEEEcCCCCccc-------------hHHHHHHHH-hcCeEEEEEcCCCccccch-HHH
Q 047363 58 -RAITMKSSSIALHYK---DYAINLIDSPGHMDF-------------CSEVSTAAR-LSDGALVLVDAVEGVHIQT-HAV 118 (876)
Q Consensus 58 -rgiti~~~~i~~~~~---~~~inlIDTPGh~dF-------------~~e~~~al~-~aDgaIlVvDa~egv~~~t-~~~ 118 (876)
.+-.+....+.+... -..+.||||||.... ...+..+++ ..+.+++|+|+..+...+. ..+
T Consensus 105 ~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~i 184 (240)
T smart00053 105 GTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKL 184 (240)
T ss_pred CCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHH
Confidence 011222333333332 267999999998632 123666777 4468999999998888776 577
Q ss_pred HHHhhhhcCCcEEEEeccccccc
Q 047363 119 LRQSWIEKLTPCLVLNKIDRLIS 141 (876)
Q Consensus 119 l~~~~~~~ip~ilviNKiD~~~~ 141 (876)
.+++...+.|.++|+||+|....
T Consensus 185 a~~ld~~~~rti~ViTK~D~~~~ 207 (240)
T smart00053 185 AKEVDPQGERTIGVITKLDLMDE 207 (240)
T ss_pred HHHHHHcCCcEEEEEECCCCCCc
Confidence 78888889999999999999853
No 292
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.53 E-value=1.2e-06 Score=95.96 Aligned_cols=116 Identities=14% Similarity=0.129 Sum_probs=70.7
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccc
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDF 87 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF 87 (876)
+..+|+++|.+|+||||++|+|++. ...... .+ . +.+......+..+.++.+++|||||..+.
T Consensus 37 ~~~rIllvGktGVGKSSliNsIlG~--~v~~vs---------~f-~-----s~t~~~~~~~~~~~G~~l~VIDTPGL~d~ 99 (313)
T TIGR00991 37 SSLTILVMGKGGVGKSSTVNSIIGE--RIATVS---------AF-Q-----SEGLRPMMVSRTRAGFTLNIIDTPGLIEG 99 (313)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCC--Cccccc---------CC-C-----CcceeEEEEEEEECCeEEEEEECCCCCch
Confidence 4578999999999999999999876 221110 00 0 01112222344467899999999998875
Q ss_pred h---HHHHHHHH------hcCeEEEEEcCCC-ccccchHHHHHHhhh-----hcCCcEEEEecccccc
Q 047363 88 C---SEVSTAAR------LSDGALVLVDAVE-GVHIQTHAVLRQSWI-----EKLTPCLVLNKIDRLI 140 (876)
Q Consensus 88 ~---~e~~~al~------~aDgaIlVvDa~e-gv~~~t~~~l~~~~~-----~~ip~ilviNKiD~~~ 140 (876)
. .+....++ ..|++|+|..... ........+++.+.. .-.+.|+++++.|...
T Consensus 100 ~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~ 167 (313)
T TIGR00991 100 GYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSP 167 (313)
T ss_pred HHHHHHHHHHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCC
Confidence 2 22333333 4788888844321 233233444444332 1247899999999763
No 293
>KOG0052 consensus Translation elongation factor EF-1 alpha/Tu [Translation, ribosomal structure and biogenesis]
Probab=98.50 E-value=3.5e-08 Score=108.91 Aligned_cols=128 Identities=27% Similarity=0.387 Sum_probs=97.9
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhhCCCCccccc------------CCce---eeccChhhhhhcceeeeeeEEEEEEcC
Q 047363 9 IRNISILAHVDHGKTTLADHLIAATGGGLLHPKL------------AGKL---RFMDYLDEEQRRAITMKSSSIALHYKD 73 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~------------~g~~---~~~d~~~~E~~rgiti~~~~i~~~~~~ 73 (876)
-+||+++||.++||||+.- +. .|.++.+. .|.+ ..+|....|++||++|......+....
T Consensus 7 ~~ni~~i~h~~s~~stt~~---~~--~g~id~~~~~k~~keaa~~~kgsf~~a~~~dk~~ae~~r~i~I~~~l~~~~t~k 81 (391)
T KOG0052|consen 7 HINIVVIGHVDSGKSTTTG---YK--CGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK 81 (391)
T ss_pred ccceEEEEeeeeeeeEEEe---ee--cccccchhhhhhchHHHhhccceeeeeeeechhhhccccceEEEEEeeccccee
Confidence 4899999999999999876 33 34444321 1222 458999999999999877776666668
Q ss_pred eEEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCc-------cccchHHHHHHhhhhcC-CcEEEEeccccccc
Q 047363 74 YAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEG-------VHIQTHAVLRQSWIEKL-TPCLVLNKIDRLIS 141 (876)
Q Consensus 74 ~~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~eg-------v~~~t~~~l~~~~~~~i-p~ilviNKiD~~~~ 141 (876)
+.+++||.|||.||...+......+|+++++|.+.-| ...|+++..-.+...++ ++++.+||||....
T Consensus 82 ~~i~iid~pgh~d~~k~mitg~sqaD~avliva~~~gefEagiskngqt~ehalla~tlgv~qliv~v~k~D~~~~ 157 (391)
T KOG0052|consen 82 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEP 157 (391)
T ss_pred EEEEEecCCCCCceeeeEEeeEeeeceeEEEEeeeccceeeeccccchhhhhhhhhccccceeeeEEeecccccCC
Confidence 9999999999999999999999999999999988322 23566666655666665 45667899998753
No 294
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.47 E-value=7.5e-07 Score=100.59 Aligned_cols=122 Identities=23% Similarity=0.300 Sum_probs=91.1
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccchH
Q 047363 10 RNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFCS 89 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~~ 89 (876)
-.++++|++|+|||||+.+|+.. ++.+...+...-||+- ..+.++|+|+.||. |+ .
T Consensus 70 fIvavvGPpGtGKsTLirSlVrr---------------~tk~ti~~i~GPiTvv------sgK~RRiTflEcp~--Dl-~ 125 (1077)
T COG5192 70 FIVAVVGPPGTGKSTLIRSLVRR---------------FTKQTIDEIRGPITVV------SGKTRRITFLECPS--DL-H 125 (1077)
T ss_pred eEEEeecCCCCChhHHHHHHHHH---------------HHHhhhhccCCceEEe------ecceeEEEEEeChH--HH-H
Confidence 45689999999999999999987 1222222332334432 23458899999993 43 4
Q ss_pred HHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEE-EEecccccccccccChHHHHHHHHHH
Q 047363 90 EVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCL-VLNKIDRLISELKLTPLEAYNRLLRI 157 (876)
Q Consensus 90 e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~il-viNKiD~~~~e~~~~~~~~~~~l~~~ 157 (876)
.+......||.++++||+.-|....|.+.+..+...++|.|+ |++.+|+... ..++..+..+|.+.
T Consensus 126 ~miDvaKIaDLVlLlIdgnfGfEMETmEFLnil~~HGmPrvlgV~ThlDlfk~--~stLr~~KKrlkhR 192 (1077)
T COG5192 126 QMIDVAKIADLVLLLIDGNFGFEMETMEFLNILISHGMPRVLGVVTHLDLFKN--PSTLRSIKKRLKHR 192 (1077)
T ss_pred HHHhHHHhhheeEEEeccccCceehHHHHHHHHhhcCCCceEEEEeecccccC--hHHHHHHHHHHhhh
Confidence 666778899999999999999999999999999999999987 7899999753 23444555656543
No 295
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.47 E-value=8.7e-08 Score=94.31 Aligned_cols=125 Identities=18% Similarity=0.281 Sum_probs=89.0
Q ss_pred CCCCCCCCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEc
Q 047363 1 MGDSDTRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLID 80 (876)
Q Consensus 1 m~~~~~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlID 80 (876)
|.+..-++...++|+|..++||+|++.+.+ .|+..... .+..-.|... |.| .+...+.++.+||
T Consensus 12 m~e~d~e~aiK~vivGng~VGKssmiqryC----kgifTkdy-kktIgvdfle----rqi-------~v~~Edvr~mlWd 75 (246)
T KOG4252|consen 12 MDETDYERAIKFVIVGNGSVGKSSMIQRYC----KGIFTKDY-KKTIGVDFLE----RQI-------KVLIEDVRSMLWD 75 (246)
T ss_pred CCchhhhhhEEEEEECCCccchHHHHHHHh----cccccccc-ccccchhhhh----HHH-------HhhHHHHHHHHHH
Confidence 444555677889999999999999999987 33433211 1111223222 111 2223467788999
Q ss_pred CCCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHH---hhhhcCCcEEEEeccccccc
Q 047363 81 SPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQ---SWIEKLTPCLVLNKIDRLIS 141 (876)
Q Consensus 81 TPGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~---~~~~~ip~ilviNKiD~~~~ 141 (876)
|.|+.+|..-+-++.|.|.+.|+|++..+.-+.....-|+. ..-..+|.++|-||||+...
T Consensus 76 tagqeEfDaItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlved 139 (246)
T KOG4252|consen 76 TAGQEEFDAITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDLVED 139 (246)
T ss_pred hccchhHHHHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHhccCCeEEeeccchhhHh
Confidence 99999999999999999999999999987766555444543 23467999999999999853
No 296
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.46 E-value=6.8e-07 Score=85.00 Aligned_cols=121 Identities=18% Similarity=0.222 Sum_probs=85.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccchH
Q 047363 10 RNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFCS 89 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~~ 89 (876)
..|.++|-.++||||++-.|... ..... + ..-|..+ -++.|++.++|++|.-|..+...
T Consensus 18 ~~ilmlGLd~aGKTtiLyKLkl~--~~~~~------i---------pTvGFnv----etVtykN~kfNvwdvGGqd~iRp 76 (180)
T KOG0071|consen 18 MRILMLGLDAAGKTTILYKLKLG--QSVTT------I---------PTVGFNV----ETVTYKNVKFNVWDVGGQDKIRP 76 (180)
T ss_pred ceEEEEecccCCceehhhHHhcC--CCccc------c---------cccceeE----EEEEeeeeEEeeeeccCchhhhH
Confidence 45778899999999999888644 11110 0 0124443 46678899999999999999999
Q ss_pred HHHHHHHhcCeEEEEEcCCCccccc--hHHH---HHHhhhhcCCcEEEEecccccccccccChHHHHHHH
Q 047363 90 EVSTAARLSDGALVLVDAVEGVHIQ--THAV---LRQSWIEKLTPCLVLNKIDRLISELKLTPLEAYNRL 154 (876)
Q Consensus 90 e~~~al~~aDgaIlVvDa~egv~~~--t~~~---l~~~~~~~ip~ilviNKiD~~~~e~~~~~~~~~~~l 154 (876)
-+.+++..+.|+|+|+|+.+..... -.++ +..-+...+|+++..||.|++.+ +.|.++...|
T Consensus 77 lWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A---~~pqei~d~l 143 (180)
T KOG0071|consen 77 LWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDA---MKPQEIQDKL 143 (180)
T ss_pred HHHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccc---cCHHHHHHHh
Confidence 9999999999999999988653211 1112 22223456788889999999975 3565554433
No 297
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=98.45 E-value=6e-07 Score=85.46 Aligned_cols=114 Identities=19% Similarity=0.252 Sum_probs=83.0
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcC-eEEEEEcCCCCc
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKD-YAINLIDSPGHM 85 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~-~~inlIDTPGh~ 85 (876)
.+-..|.++|-.++||||++..|... |.+......|..+ .++.+.+ +++|++|.-|..
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sE-----------------D~~hltpT~GFn~----k~v~~~g~f~LnvwDiGGqr 73 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSE-----------------DPRHLTPTNGFNT----KKVEYDGTFHLNVWDIGGQR 73 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccC-----------------ChhhccccCCcce----EEEeecCcEEEEEEecCCcc
Confidence 44456889999999999999999654 1112222345544 3455554 999999999999
Q ss_pred cchHHHHHHHHhcCeEEEEEcCCCcccc-----chHHHHHHhhhhcCCcEEEEeccccccc
Q 047363 86 DFCSEVSTAARLSDGALVLVDAVEGVHI-----QTHAVLRQSWIEKLTPCLVLNKIDRLIS 141 (876)
Q Consensus 86 dF~~e~~~al~~aDgaIlVvDa~egv~~-----~t~~~l~~~~~~~ip~ilviNKiD~~~~ 141 (876)
....-+..++...|+.|+|+|+.+.-.. ...+++.......+|+.++.||.|++.+
T Consensus 74 ~IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdllta 134 (185)
T KOG0074|consen 74 GIRPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTA 134 (185)
T ss_pred ccchhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhh
Confidence 9999999999999999999997754321 1122333344456899999999999864
No 298
>PRK13768 GTPase; Provisional
Probab=98.44 E-value=5.6e-07 Score=96.97 Aligned_cols=68 Identities=25% Similarity=0.225 Sum_probs=47.2
Q ss_pred eEEEEEcCCCCccch---HH---HHHHHHh--cCeEEEEEcCCCccccchHHHHHHh-----hhhcCCcEEEEecccccc
Q 047363 74 YAINLIDSPGHMDFC---SE---VSTAARL--SDGALVLVDAVEGVHIQTHAVLRQS-----WIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 74 ~~inlIDTPGh~dF~---~e---~~~al~~--aDgaIlVvDa~egv~~~t~~~l~~~-----~~~~ip~ilviNKiD~~~ 140 (876)
..+.+|||||+.++. .. ....+.. ++++++|+|+..+............ ...++|+++|+||+|+..
T Consensus 97 ~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~ 176 (253)
T PRK13768 97 ADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLS 176 (253)
T ss_pred CCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcC
Confidence 479999999987753 22 2233333 7999999999876655443322221 256899999999999986
Q ss_pred c
Q 047363 141 S 141 (876)
Q Consensus 141 ~ 141 (876)
.
T Consensus 177 ~ 177 (253)
T PRK13768 177 E 177 (253)
T ss_pred c
Confidence 4
No 299
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.42 E-value=4.7e-07 Score=90.52 Aligned_cols=64 Identities=23% Similarity=0.227 Sum_probs=46.3
Q ss_pred CeEEEEEcCCCCccc----hHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHh-hhhcCCcEEEEecc
Q 047363 73 DYAINLIDSPGHMDF----CSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQS-WIEKLTPCLVLNKI 136 (876)
Q Consensus 73 ~~~inlIDTPGh~dF----~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~-~~~~ip~ilviNKi 136 (876)
...+.||||||..+. ...+..++..+|.+|+|+++...........+.+. ....-..++|+||+
T Consensus 100 ~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 100 LRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp SCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTTCSSEEEEEE-G
T ss_pred ccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 456999999997553 24578888999999999999987765555555544 44455567788985
No 300
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.37 E-value=1.4e-06 Score=82.62 Aligned_cols=121 Identities=17% Similarity=0.165 Sum_probs=85.9
Q ss_pred CCCCCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCC
Q 047363 4 SDTRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPG 83 (876)
Q Consensus 4 ~~~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPG 83 (876)
++-.-|..-.|+|.-|+|||.|+-.+.... ++-.-+. .-|+.+....+.+.....++.||||.|
T Consensus 6 ynysyifkyiiigdmgvgkscllhqftekk--------------fmadcph--tigvefgtriievsgqkiklqiwdtag 69 (215)
T KOG0097|consen 6 YNYSYIFKYIIIGDMGVGKSCLLHQFTEKK--------------FMADCPH--TIGVEFGTRIIEVSGQKIKLQIWDTAG 69 (215)
T ss_pred cchhheEEEEEEccccccHHHHHHHHHHHH--------------HhhcCCc--ccceecceeEEEecCcEEEEEEeeccc
Confidence 344567888999999999999998887661 1111111 124455555566766778899999999
Q ss_pred CccchHHHHHHHHhcCeEEEEEcCCCccccchHHHH-HHhhhh---cCCcEEEEecccccc
Q 047363 84 HMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVL-RQSWIE---KLTPCLVLNKIDRLI 140 (876)
Q Consensus 84 h~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l-~~~~~~---~ip~ilviNKiD~~~ 140 (876)
+.+|..-+....|.+-|+++|.|...........-| .-++.. +..++|+.||.|+..
T Consensus 70 qerfravtrsyyrgaagalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~ 130 (215)
T KOG0097|consen 70 QERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLES 130 (215)
T ss_pred HHHHHHHHHHHhccccceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhh
Confidence 999999999999999999999999765544433333 223222 334567789999864
No 301
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.36 E-value=5.9e-07 Score=97.46 Aligned_cols=126 Identities=21% Similarity=0.207 Sum_probs=93.5
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceee-ccChhhhhhcceeeeeeEEEEEEc----------------
Q 047363 10 RNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRF-MDYLDEEQRRAITMKSSSIALHYK---------------- 72 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~-~d~~~~E~~rgiti~~~~i~~~~~---------------- 72 (876)
-.++++|..|+|||||+.-|... ..+. ..|+.+. +-..+.|...|-|...+.-.+-++
T Consensus 168 vRvAVlGg~D~GKSTLlGVLTQg----eLDn-G~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEE 242 (591)
T KOG1143|consen 168 VRVAVLGGCDVGKSTLLGVLTQG----ELDN-GNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEE 242 (591)
T ss_pred EEEEEecCcccCcceeeeeeecc----cccC-CCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHH
Confidence 35899999999999999888654 1211 1233333 233455666555433222222222
Q ss_pred -----CeEEEEEcCCCCccchHHHHHHHHh--cCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccc
Q 047363 73 -----DYAINLIDSPGHMDFCSEVSTAARL--SDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 73 -----~~~inlIDTPGh~dF~~e~~~al~~--aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~ 140 (876)
+..++|||.+||..|..-+..++.. -|.|++||+|..|+...|++.+..+...++|++++++|||+..
T Consensus 243 i~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL~iPfFvlvtK~Dl~~ 317 (591)
T KOG1143|consen 243 IVEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREHLGLIAALNIPFFVLVTKMDLVD 317 (591)
T ss_pred HHhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHHHHHHHHHhCCCeEEEEEeecccc
Confidence 4679999999999998877777765 3899999999999999999999999999999999999999975
No 302
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.28 E-value=3e-06 Score=94.78 Aligned_cols=128 Identities=16% Similarity=0.142 Sum_probs=79.8
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcc---eeeeeeE-----EEEEEc---CeEEEE
Q 047363 10 RNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRA---ITMKSSS-----IALHYK---DYAINL 78 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rg---iti~~~~-----i~~~~~---~~~inl 78 (876)
..|+++|+.++|||||+++|....---.++. ...+.|..|-.+... .| +|..... +.+... ..++.|
T Consensus 18 IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~-~~~k~Ra~DELpqs~-~GktItTTePkfvP~kAvEI~~~~~~~~~Vrl 95 (492)
T TIGR02836 18 IYIGVVGPVRTGKSTFIKKFMELLVLPNISN-EYDKERAQDELPQSA-AGKTIMTTEPKFVPNEAVEININEGTKFKVRL 95 (492)
T ss_pred EEEEEEcCCCCChHHHHHHHHhhhccccccc-hhHHhHHHhccCcCC-CCCCcccCCCccccCcceEEeccCCCcccEEE
Confidence 5799999999999999999987610000110 000011111111111 13 2222211 222222 368999
Q ss_pred EcCCCCccc-------hHH----------------------HHHHHH-hcCeEEEEE-cCC------CccccchHHHHHH
Q 047363 79 IDSPGHMDF-------CSE----------------------VSTAAR-LSDGALVLV-DAV------EGVHIQTHAVLRQ 121 (876)
Q Consensus 79 IDTPGh~dF-------~~e----------------------~~~al~-~aDgaIlVv-Da~------egv~~~t~~~l~~ 121 (876)
|||+|..+= ... +...+. .+|.+|+|. |++ ++.....++++..
T Consensus 96 IDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~e 175 (492)
T TIGR02836 96 VDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEE 175 (492)
T ss_pred EECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHH
Confidence 999997652 111 566677 899999998 886 4455556778899
Q ss_pred hhhhcCCcEEEEeccccc
Q 047363 122 SWIEKLTPCLVLNKIDRL 139 (876)
Q Consensus 122 ~~~~~ip~ilviNKiD~~ 139 (876)
+++.++|+++++||.|-.
T Consensus 176 Lk~~~kPfiivlN~~dp~ 193 (492)
T TIGR02836 176 LKELNKPFIILLNSTHPY 193 (492)
T ss_pred HHhcCCCEEEEEECcCCC
Confidence 999999999999999954
No 303
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.27 E-value=1.5e-05 Score=83.69 Aligned_cols=115 Identities=16% Similarity=0.196 Sum_probs=69.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccc--
Q 047363 10 RNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDF-- 87 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF-- 87 (876)
.+|.++|..|+||||+.|.|++. ...-+.. .....|.........+.+..+.+|||||.-|-
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~--~~f~~~~--------------~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~ 64 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGK--EVFKSGS--------------SAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDG 64 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS--S-SS--T--------------TTSS--SS-EEEEEEETTEEEEEEE--SSEETTE
T ss_pred CEEEEECCCCCCHHHHHHHHhcc--cceeecc--------------ccCCcccccceeeeeecceEEEEEeCCCCCCCcc
Confidence 47999999999999999999876 2111100 01122333444455778999999999997552
Q ss_pred -----hHHHHHHHH----hcCeEEEEEcCCCccccchHHHHHHhhh-h----cCCcEEEEeccccccc
Q 047363 88 -----CSEVSTAAR----LSDGALVLVDAVEGVHIQTHAVLRQSWI-E----KLTPCLVLNKIDRLIS 141 (876)
Q Consensus 88 -----~~e~~~al~----~aDgaIlVvDa~egv~~~t~~~l~~~~~-~----~ip~ilviNKiD~~~~ 141 (876)
..++..++. ..+++|+|+... ..+......++...+ . -.-.+++++..|.+..
T Consensus 65 ~~~~~~~~i~~~l~~~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~ 131 (212)
T PF04548_consen 65 SDEEIIREIKRCLSLCSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELED 131 (212)
T ss_dssp EHHHHHHHHHHHHHHTTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTT
T ss_pred cHHHHHHHHHHHHHhccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhcccccc
Confidence 223444333 357899999987 555555555554432 1 1246777888887654
No 304
>PTZ00099 rab6; Provisional
Probab=98.25 E-value=2.9e-06 Score=86.31 Aligned_cols=74 Identities=22% Similarity=0.182 Sum_probs=55.6
Q ss_pred EEEEEcCeEEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHH-HHhhh---hcCCcEEEEecccccc
Q 047363 67 IALHYKDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVL-RQSWI---EKLTPCLVLNKIDRLI 140 (876)
Q Consensus 67 i~~~~~~~~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l-~~~~~---~~ip~ilviNKiD~~~ 140 (876)
+.+......++||||||+..|.......++.+|++|+|+|+.+..+......| ..+.. .++|++||+||+|+..
T Consensus 22 ~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK~DL~~ 99 (176)
T PTZ00099 22 LYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGD 99 (176)
T ss_pred EEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECccccc
Confidence 33434457899999999999999999999999999999999876544433322 22222 3578899999999864
No 305
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=98.25 E-value=6.8e-06 Score=89.50 Aligned_cols=115 Identities=17% Similarity=0.141 Sum_probs=76.9
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEE-EcCeEEEEEcCCCCcc-
Q 047363 9 IRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALH-YKDYAINLIDSPGHMD- 86 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~-~~~~~inlIDTPGh~d- 86 (876)
+-.|++||-+++|||||++.+... .-.|...+ ++ |...+...+. .....+.+-|.||.+.
T Consensus 159 lADVGLVG~PNaGKSTlls~vS~A--kPKIadYp-----FT-----------TL~PnLGvV~~~~~~sfv~ADIPGLIEG 220 (369)
T COG0536 159 LADVGLVGLPNAGKSTLLSAVSAA--KPKIADYP-----FT-----------TLVPNLGVVRVDGGESFVVADIPGLIEG 220 (369)
T ss_pred ecccccccCCCCcHHHHHHHHhhc--CCcccCCc-----cc-----------cccCcccEEEecCCCcEEEecCcccccc
Confidence 456899999999999999999876 43332211 11 3333333333 3456799999999765
Q ss_pred ------chHHHHHHHHhcCeEEEEEcCCCcc----ccchHHHHHHhhh-----hcCCcEEEEeccccccc
Q 047363 87 ------FCSEVSTAARLSDGALVLVDAVEGV----HIQTHAVLRQSWI-----EKLTPCLVLNKIDRLIS 141 (876)
Q Consensus 87 ------F~~e~~~al~~aDgaIlVvDa~egv----~~~t~~~l~~~~~-----~~ip~ilviNKiD~~~~ 141 (876)
+-.+..+.+..|-..+.|||..... ......+...+.+ ...|.++|+||+|.+..
T Consensus 221 As~G~GLG~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~ 290 (369)
T COG0536 221 ASEGVGLGLRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLD 290 (369)
T ss_pred cccCCCccHHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcC
Confidence 2445677777889999999987433 2222334444443 36799999999997654
No 306
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.22 E-value=2.3e-06 Score=91.27 Aligned_cols=67 Identities=22% Similarity=0.226 Sum_probs=36.4
Q ss_pred EEEEEcCCCCccchHHHHHH------HH--hcCeEEEEEcCCCccccch--HH-H--HHHhhhhcCCcEEEEeccccccc
Q 047363 75 AINLIDSPGHMDFCSEVSTA------AR--LSDGALVLVDAVEGVHIQT--HA-V--LRQSWIEKLTPCLVLNKIDRLIS 141 (876)
Q Consensus 75 ~inlIDTPGh~dF~~e~~~a------l~--~aDgaIlVvDa~egv~~~t--~~-~--l~~~~~~~ip~ilviNKiD~~~~ 141 (876)
.+.|+||||+.+|....... +. ..=++|+++|+.--..+.. .. + +....+.++|.|.|+||+|+...
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~ 171 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK 171 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence 79999999999985432222 22 2337888999873322111 11 1 12234578999999999999873
No 307
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.22 E-value=2.1e-06 Score=84.77 Aligned_cols=120 Identities=18% Similarity=0.130 Sum_probs=88.1
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccch
Q 047363 9 IRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFC 88 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~ 88 (876)
-.+|.|+|.-++||||+++++-.. ..+.. |. ++... --.|+..+..++......+++||.-|+....
T Consensus 17 ~y~vlIlgldnAGKttfLe~~Kt~-~~~~~-----~~---l~~~k----i~~tvgLnig~i~v~~~~l~fwdlgGQe~lr 83 (197)
T KOG0076|consen 17 DYSVLILGLDNAGKTTFLEALKTD-FSKAY-----GG---LNPSK----ITPTVGLNIGTIEVCNAPLSFWDLGGQESLR 83 (197)
T ss_pred hhhheeeccccCCchhHHHHHHHH-HHhhh-----cC---CCHHH----eecccceeecceeeccceeEEEEcCChHHHH
Confidence 367899999999999999988543 01111 00 01101 1124455556666678899999999999999
Q ss_pred HHHHHHHHhcCeEEEEEcCCCccc-----cchHHHHHHhhhhcCCcEEEEeccccccc
Q 047363 89 SEVSTAARLSDGALVLVDAVEGVH-----IQTHAVLRQSWIEKLTPCLVLNKIDRLIS 141 (876)
Q Consensus 89 ~e~~~al~~aDgaIlVvDa~egv~-----~~t~~~l~~~~~~~ip~ilviNKiD~~~~ 141 (876)
+....++..|+++|.|||+.+.-. .+.+.+..+-...++|+++..||-|+.++
T Consensus 84 Slw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~ 141 (197)
T KOG0076|consen 84 SLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNA 141 (197)
T ss_pred HHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhh
Confidence 999999999999999999997432 23345566666789999999999999864
No 308
>PTZ00258 GTP-binding protein; Provisional
Probab=98.17 E-value=5.1e-06 Score=94.15 Aligned_cols=83 Identities=16% Similarity=0.162 Sum_probs=57.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEc---------------
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYK--------------- 72 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~--------------- 72 (876)
.-..|+|+|.+|+|||||+++|... ...+... .+.|+......+.+.
T Consensus 20 ~~~kvgIVG~PNvGKSTLfnaLt~~--~~~v~n~----------------pftTi~p~~g~v~~~d~r~~~l~~~~~~~~ 81 (390)
T PTZ00258 20 NNLKMGIVGLPNVGKSTTFNALCKQ--QVPAENF----------------PFCTIDPNTARVNVPDERFDWLCKHFKPKS 81 (390)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcC--cccccCC----------------CCCcccceEEEEecccchhhHHHHHcCCcc
Confidence 3457999999999999999999654 2222111 123333333334333
Q ss_pred --CeEEEEEcCCCCcc-------chHHHHHHHHhcCeEEEEEcCC
Q 047363 73 --DYAINLIDSPGHMD-------FCSEVSTAARLSDGALVLVDAV 108 (876)
Q Consensus 73 --~~~inlIDTPGh~d-------F~~e~~~al~~aDgaIlVvDa~ 108 (876)
...+.++||||... ........++.+|++++|||+.
T Consensus 82 ~~~aqi~lvDtpGLv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 82 IVPAQLDITDIAGLVKGASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred cCCCCeEEEECCCcCcCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 23589999999764 3346778899999999999985
No 309
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.17 E-value=4.1e-06 Score=90.97 Aligned_cols=80 Identities=23% Similarity=0.248 Sum_probs=53.4
Q ss_pred EEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcC-----------------e
Q 047363 12 ISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKD-----------------Y 74 (876)
Q Consensus 12 I~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~-----------------~ 74 (876)
|+|+|.+|+|||||+++|+.. .-.+... .+.|+......+.+.+ .
T Consensus 1 igivG~PN~GKSTLfn~Lt~~--~~~~~n~----------------pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~ 62 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKA--GAEAANY----------------PFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPA 62 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCC--CCccccc----------------cccchhceeeeEEeccchhhhHHHHhCCceeeee
Confidence 689999999999999999766 3211110 1222222222222222 3
Q ss_pred EEEEEcCCCCcc-------chHHHHHHHHhcCeEEEEEcCCC
Q 047363 75 AINLIDSPGHMD-------FCSEVSTAARLSDGALVLVDAVE 109 (876)
Q Consensus 75 ~inlIDTPGh~d-------F~~e~~~al~~aDgaIlVvDa~e 109 (876)
.+.++||||..+ +.......++.+|++++|||+.+
T Consensus 63 ~i~lvD~pGl~~~a~~~~glg~~fL~~i~~~D~li~VV~~f~ 104 (274)
T cd01900 63 TIEFVDIAGLVKGASKGEGLGNKFLSHIREVDAIAHVVRCFE 104 (274)
T ss_pred EEEEEECCCcCCCCchhhHHHHHHHHHHHhCCEEEEEEeCcC
Confidence 599999999664 33457778899999999999853
No 310
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.16 E-value=1.4e-05 Score=87.36 Aligned_cols=123 Identities=16% Similarity=0.245 Sum_probs=71.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEc--CeEEEEEcCCCCccc
Q 047363 10 RNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYK--DYAINLIDSPGHMDF 87 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~--~~~inlIDTPGh~dF 87 (876)
.||.++|..|.|||||++.|+.. ...... ...+.......+..++......+.-. ...+++|||||+-|.
T Consensus 5 fnImVvG~sG~GKTTFIntL~~~--~~~~~~------~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~ 76 (281)
T PF00735_consen 5 FNIMVVGESGLGKTTFINTLFNS--DIISED------SSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDN 76 (281)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTS--S---------------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSS
T ss_pred EEEEEECCCCCCHHHHHHHHHhc--cccccc------ccccccccccccccceeeEEEEeccCCcceEEEEEeCCCcccc
Confidence 58999999999999999999876 221110 00011111223344455444444433 357899999997654
Q ss_pred hHH--------------HHHHHH-------------hcCeEEEEEcCC-CccccchHHHHHHhhhhcCCcEEEEeccccc
Q 047363 88 CSE--------------VSTAAR-------------LSDGALVLVDAV-EGVHIQTHAVLRQSWIEKLTPCLVLNKIDRL 139 (876)
Q Consensus 88 ~~e--------------~~~al~-------------~aDgaIlVvDa~-egv~~~t~~~l~~~~~~~ip~ilviNKiD~~ 139 (876)
... ....+. ..|++|..+++. .|+.......++.+.+ .+++|-||.|.|.+
T Consensus 77 i~n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~-~vNvIPvIaKaD~l 155 (281)
T PF00735_consen 77 IDNSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSK-RVNVIPVIAKADTL 155 (281)
T ss_dssp STHCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTT-TSEEEEEESTGGGS
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhcc-cccEEeEEeccccc
Confidence 110 111111 137899999986 5677767767666643 47889999999997
Q ss_pred cc
Q 047363 140 IS 141 (876)
Q Consensus 140 ~~ 141 (876)
..
T Consensus 156 t~ 157 (281)
T PF00735_consen 156 TP 157 (281)
T ss_dssp -H
T ss_pred CH
Confidence 53
No 311
>cd01434 EFG_mtEFG1_IV EFG_mtEFG1_IV: domains similar to domain IV of the bacterial translational elongation factor (EF) EF-G. Included in this group is a domain of mitochondrial Elongation factor G1 (mtEFG1) proteins homologous to domain IV of EF-G. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provi
Probab=98.15 E-value=6.6e-06 Score=77.91 Aligned_cols=40 Identities=18% Similarity=0.272 Sum_probs=37.0
Q ss_pred hhhhHHHHHHHHHHHhcCCCCCCCCcceeEEEEEEEeecc
Q 047363 802 AQSLESSIVSGFQLATASGPLCDEPMWGLAFIVEAYISSN 841 (876)
Q Consensus 802 ~~~~~~siv~GFq~at~~GPLceEp~~gv~f~i~d~~~~~ 841 (876)
..++.++|..||++|+..|||+.+||+||++.|.+...|.
T Consensus 53 p~~~~~ai~~g~~~a~~~Gpl~G~pv~~v~V~l~~~~~~~ 92 (116)
T cd01434 53 PKEYIPAVEKGFREALEKGPLAGYPVVDVKVTLYDGSYHD 92 (116)
T ss_pred CHHHHHHHHHHHHHHHhcCcccCCccccEEEEEEeceeec
Confidence 4579999999999999999999999999999999987764
No 312
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.14 E-value=1.1e-05 Score=89.73 Aligned_cols=60 Identities=25% Similarity=0.276 Sum_probs=41.9
Q ss_pred CeEEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCccccchHH--HHHHhhhhcCCcEEEEeccccccc
Q 047363 73 DYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHA--VLRQSWIEKLTPCLVLNKIDRLIS 141 (876)
Q Consensus 73 ~~~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~--~l~~~~~~~ip~ilviNKiD~~~~ 141 (876)
++.+.||||+|... .++. ....||.+++|++...|...|... ++.. .-++|+||+|+...
T Consensus 148 g~d~viieT~Gv~q--s~~~-i~~~aD~vlvv~~p~~gd~iq~~k~gi~E~------aDIiVVNKaDl~~~ 209 (332)
T PRK09435 148 GYDVILVETVGVGQ--SETA-VAGMVDFFLLLQLPGAGDELQGIKKGIMEL------ADLIVINKADGDNK 209 (332)
T ss_pred CCCEEEEECCCCcc--chhH-HHHhCCEEEEEecCCchHHHHHHHhhhhhh------hheEEeehhcccch
Confidence 68999999999773 3333 577899999998755555444322 2222 34899999998753
No 313
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=98.10 E-value=6.2e-06 Score=89.13 Aligned_cols=112 Identities=22% Similarity=0.286 Sum_probs=80.6
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccc-
Q 047363 9 IRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDF- 87 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF- 87 (876)
.-.++++|.+++|||||++.|+.. .-. .+...| .|...-+.-+.|++..|.|+|+||...=
T Consensus 63 da~v~lVGfPsvGKStLL~~LTnt--~se-----va~y~F-----------TTl~~VPG~l~Y~ga~IQild~Pgii~ga 124 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKLTNT--KSE-----VADYPF-----------TTLEPVPGMLEYKGAQIQLLDLPGIIEGA 124 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHHhCC--Ccc-----ccccCc-----------eecccccceEeecCceEEEEcCcccccCc
Confidence 467999999999999999999765 211 122222 2555566778899999999999997653
Q ss_pred ------hHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhc-----CCcEEEEeccccc
Q 047363 88 ------CSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEK-----LTPCLVLNKIDRL 139 (876)
Q Consensus 88 ------~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~-----ip~ilviNKiD~~ 139 (876)
..++.+.+|.||.+++|+|+.+.... .+.+.+.+...+ .|.-+.+.|-++-
T Consensus 125 s~g~grG~~vlsv~R~ADlIiiVld~~~~~~~-~~~i~~ELe~~GIrlnk~~p~V~I~kk~~g 186 (365)
T COG1163 125 SSGRGRGRQVLSVARNADLIIIVLDVFEDPHH-RDIIERELEDVGIRLNKRPPDVTIKKKESG 186 (365)
T ss_pred ccCCCCcceeeeeeccCCEEEEEEecCCChhH-HHHHHHHHHhcCeEecCCCCceEEEEeccC
Confidence 35689999999999999999866532 344555555544 3666677665554
No 314
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=98.09 E-value=1.3e-05 Score=77.54 Aligned_cols=116 Identities=17% Similarity=0.226 Sum_probs=79.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChh--hhhhcceeeeeeEEEEEEcCeEEEEEcCCCCc
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLD--EEQRRAITMKSSSIALHYKDYAINLIDSPGHM 85 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~--~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~ 85 (876)
+.-.|.++|.-++|||++++.|++. +-.+...... +.-|.+. .|..||. ...+.|.||.|..
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg--~~~~~~e~~p--TiEDiY~~svet~rga------------rE~l~lyDTaGlq 71 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYG--NHVPGTELHP--TIEDIYVASVETDRGA------------REQLRLYDTAGLQ 71 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhc--cCCCCCcccc--chhhheeEeeecCCCh------------hheEEEeeccccc
Confidence 4567899999999999999999987 3222211100 1111100 1222221 2568899999999
Q ss_pred cchHHH-HHHHHhcCeEEEEEcCCCccccchHHHHHHhh-----hhcCCcEEEEeccccc
Q 047363 86 DFCSEV-STAARLSDGALVLVDAVEGVHIQTHAVLRQSW-----IEKLTPCLVLNKIDRL 139 (876)
Q Consensus 86 dF~~e~-~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~-----~~~ip~ilviNKiD~~ 139 (876)
+...+. ..++..+|+.|+|.|..+.-+.+...+++.-. +..+|+++..||.|+.
T Consensus 72 ~~~~eLprhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~ 131 (198)
T KOG3883|consen 72 GGQQELPRHYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRA 131 (198)
T ss_pred CchhhhhHhHhccCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcc
Confidence 885554 56678899999999999888887776665432 3457999999999996
No 315
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.08 E-value=5.7e-06 Score=81.17 Aligned_cols=114 Identities=22% Similarity=0.187 Sum_probs=79.7
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccc
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDF 87 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF 87 (876)
+--.+.++|--|+|||||+..|-... .+.-. -|.+.+.-.+...+..+.-+|.-||..-
T Consensus 19 K~gKllFlGLDNAGKTTLLHMLKdDr-l~qhv--------------------PTlHPTSE~l~Ig~m~ftt~DLGGH~qA 77 (193)
T KOG0077|consen 19 KFGKLLFLGLDNAGKTTLLHMLKDDR-LGQHV--------------------PTLHPTSEELSIGGMTFTTFDLGGHLQA 77 (193)
T ss_pred cCceEEEEeecCCchhhHHHHHcccc-ccccC--------------------CCcCCChHHheecCceEEEEccccHHHH
Confidence 34578899999999999998885430 01000 1222222233445678899999999988
Q ss_pred hHHHHHHHHhcCeEEEEEcCCCccccchHH-----HHHHhhhhcCCcEEEEecccccccc
Q 047363 88 CSEVSTAARLSDGALVLVDAVEGVHIQTHA-----VLRQSWIEKLTPCLVLNKIDRLISE 142 (876)
Q Consensus 88 ~~e~~~al~~aDgaIlVvDa~egv~~~t~~-----~l~~~~~~~ip~ilviNKiD~~~~e 142 (876)
..-...++..+|++|++||+.+-...+... ++....-.++|+++..||+|++.+-
T Consensus 78 rr~wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~ 137 (193)
T KOG0077|consen 78 RRVWKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAA 137 (193)
T ss_pred HHHHHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcc
Confidence 888889999999999999998755443321 2222234689999999999999763
No 316
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.08 E-value=1.1e-05 Score=84.34 Aligned_cols=126 Identities=17% Similarity=0.183 Sum_probs=68.4
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCce-eeccChhhhhhcce---eeeeeEEEE-------------
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKL-RFMDYLDEEQRRAI---TMKSSSIAL------------- 69 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~-~~~d~~~~E~~rgi---ti~~~~i~~------------- 69 (876)
..+++|+++|+.|+|||||+++|+.....+.-..-..+.. .-.|....+ ..|. .+....+..
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~-~~~~~~~~l~~gcic~~~~~~~~~~l~~~ 98 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLR-KYGAPAIQINTGKECHLDAHMVAHALEDL 98 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHH-HcCCcEEEEcCCCcccCChHHHHHHHHHh
Confidence 4699999999999999999999998732211000000111 011221111 1121 111111110
Q ss_pred EEcCeEEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccc
Q 047363 70 HYKDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 70 ~~~~~~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~ 140 (876)
...+..+.||+|.|....... .....+..+.|+|+..+... ..+.....+.|.++++||+|+..
T Consensus 99 ~~~~~d~IiIEt~G~l~~~~~---~~~~~~~~i~Vvd~~~~d~~----~~~~~~~~~~a~iiv~NK~Dl~~ 162 (207)
T TIGR00073 99 PLDDIDLLFIENVGNLVCPAD---FDLGEHMRVVLLSVTEGDDK----PLKYPGMFKEADLIVINKADLAE 162 (207)
T ss_pred ccCCCCEEEEecCCCcCCCcc---cccccCeEEEEEecCcccch----hhhhHhHHhhCCEEEEEHHHccc
Confidence 011457899999993211111 11234566788998765432 22233345678999999999974
No 317
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.07 E-value=1.1e-05 Score=90.43 Aligned_cols=82 Identities=21% Similarity=0.231 Sum_probs=55.1
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcC----------------
Q 047363 10 RNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKD---------------- 73 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~---------------- 73 (876)
..|+|+|.+|+|||||+++|++. .-.+... .+.|+......+.+.+
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~--~~~v~ny----------------pftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~ 64 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKA--GAEAANY----------------PFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIV 64 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC--CCeeccc----------------ccccccceEEEEEeccccchhhHHhcCCcccc
Confidence 47999999999999999999765 2111110 1222222222222221
Q ss_pred -eEEEEEcCCCCcc-------chHHHHHHHHhcCeEEEEEcCCC
Q 047363 74 -YAINLIDSPGHMD-------FCSEVSTAARLSDGALVLVDAVE 109 (876)
Q Consensus 74 -~~inlIDTPGh~d-------F~~e~~~al~~aDgaIlVvDa~e 109 (876)
..+.|+||||..+ ........++.||++++|||+.+
T Consensus 65 ~a~i~lvD~pGL~~~a~~g~glg~~fL~~i~~aD~li~VVd~f~ 108 (364)
T PRK09601 65 PATIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFE 108 (364)
T ss_pred CceEEEEECCCCCCCCChHHHHHHHHHHHHHhCCEEEEEEeCCc
Confidence 3699999999764 23357778899999999999963
No 318
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.02 E-value=1.3e-05 Score=90.50 Aligned_cols=126 Identities=20% Similarity=0.179 Sum_probs=75.3
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhh--CCCCcccccCCceee--ccCh---hhhhhc------ceeeeeeEEE-------
Q 047363 9 IRNISILAHVDHGKTTLADHLIAAT--GGGLLHPKLAGKLRF--MDYL---DEEQRR------AITMKSSSIA------- 68 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~t--~~g~i~~~~~g~~~~--~d~~---~~E~~r------giti~~~~i~------- 68 (876)
-.+++++|++|+||||++..|.... ..|. .++.+ .|.. ..|+-+ |+.+....-.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~------~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l 210 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGA------SKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLAL 210 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCC------CeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHH
Confidence 4789999999999999999998651 0111 11211 2222 123322 4433211100
Q ss_pred EEEcCeEEEEEcCCCCc---cchHHHHHHHHhcCe---EEEEEcCCCccccchHHHHHHhhhhcCCc-------EEEEec
Q 047363 69 LHYKDYAINLIDSPGHM---DFCSEVSTAARLSDG---ALVLVDAVEGVHIQTHAVLRQSWIEKLTP-------CLVLNK 135 (876)
Q Consensus 69 ~~~~~~~inlIDTPGh~---dF~~e~~~al~~aDg---aIlVvDa~egv~~~t~~~l~~~~~~~ip~-------ilviNK 135 (876)
-.+.++.+.||||||.. ++..+....+..++. .++|+++..+....++.++++....++|. =++++|
T Consensus 211 ~~l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TK 290 (374)
T PRK14722 211 AELRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTK 290 (374)
T ss_pred HHhcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEec
Confidence 11246889999999977 344455555655443 49999998877655555555554444432 478899
Q ss_pred ccccc
Q 047363 136 IDRLI 140 (876)
Q Consensus 136 iD~~~ 140 (876)
+|-..
T Consensus 291 lDEt~ 295 (374)
T PRK14722 291 LDEAS 295 (374)
T ss_pred cccCC
Confidence 99863
No 319
>cd01342 Translation_Factor_II_like Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor Tu consists of three structural domains, this family represents the second domain. Domain II adopts a beta barrel structure and is involved in binding to charged tRNA. Domain II is found in other proteins such as elongation factor G and translation initiation factor IF-2. This group also includes the C2 subdomain of domain IV of IF-2 that has the same fold as domain II of (EF-Tu). Like IF-2 from certain prokaryotes such as Thermus thermophilus, mitochondrial IF-2 lacks domain II, which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=98.01 E-value=3.6e-05 Score=66.33 Aligned_cols=65 Identities=29% Similarity=0.242 Sum_probs=49.1
Q ss_pred eEEEEEEEeCccCCCCEEEEeccccCCcchhhhccccceeEEeEEEEecCCceeecceeeCCCeEEEecCCc-eeeccce
Q 047363 439 FLAFARIFSGVLYSGQRVFVLSALYDPLKVESMQKHIQEAELQSLYLMMGQGLKPVASAKAGNVVAIRGLGQ-QILKSAT 517 (876)
Q Consensus 439 ~iaf~RV~SGtL~~G~~v~vlg~~y~~~~~~~~~~~~~~~~I~~L~l~~G~~~~~v~~v~AGnIv~I~GL~~-~i~k~~T 517 (876)
+++++||++|+|++||.+++.+.. ...+.+|.+|+... .+++++.||+++++.+.+. .+..|++
T Consensus 16 ~v~~~rv~~G~l~~g~~v~~~~~~-----------~~~~~~i~~i~~~~----~~~~~~~aG~~~~~~~~~~~~~~~g~~ 80 (83)
T cd01342 16 TVATGRVESGTLKKGDKVRVGPGG-----------GGVKGKVKSLKRFK----GEVDEAVAGDIVGIVLKDKDDIKIGDT 80 (83)
T ss_pred EEEEEEEeeCEEecCCEEEEecCC-----------ceeEEEEeEeEecC----ceeceecCCCEEEEEEccccccCCCCE
Confidence 699999999999999999987530 11346788888776 6789999999999987543 1334444
Q ss_pred e
Q 047363 518 L 518 (876)
Q Consensus 518 l 518 (876)
+
T Consensus 81 l 81 (83)
T cd01342 81 L 81 (83)
T ss_pred e
Confidence 4
No 320
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.01 E-value=1.2e-05 Score=90.31 Aligned_cols=113 Identities=16% Similarity=0.104 Sum_probs=63.1
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcC-eEEEEEcCCCC--cc
Q 047363 10 RNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKD-YAINLIDSPGH--MD 86 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~-~~inlIDTPGh--~d 86 (876)
-||||+|.+|+|||||+|+|.+-.|...- ....|-+ ..|++. ..+.+.. -.+.+||.||. .+
T Consensus 36 l~IaV~G~sGsGKSSfINalrGl~~~d~~-aA~tGv~------------etT~~~--~~Y~~p~~pnv~lWDlPG~gt~~ 100 (376)
T PF05049_consen 36 LNIAVTGESGSGKSSFINALRGLGHEDEG-AAPTGVV------------ETTMEP--TPYPHPKFPNVTLWDLPGIGTPN 100 (376)
T ss_dssp EEEEEEESTTSSHHHHHHHHTT--TTSTT-S--SSSH------------SCCTS---EEEE-SS-TTEEEEEE--GGGSS
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCcC-cCCCCCC------------cCCCCC--eeCCCCCCCCCeEEeCCCCCCCC
Confidence 59999999999999999999654211000 0000110 112222 2223332 35999999995 34
Q ss_pred chHHH-H--HHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEeccccc
Q 047363 87 FCSEV-S--TAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRL 139 (876)
Q Consensus 87 F~~e~-~--~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~ 139 (876)
|..+. . -.+...|..|+|.+. ........+.+.+.+.+.|+.+|-+|+|..
T Consensus 101 f~~~~Yl~~~~~~~yD~fiii~s~--rf~~ndv~La~~i~~~gK~fyfVRTKvD~D 154 (376)
T PF05049_consen 101 FPPEEYLKEVKFYRYDFFIIISSE--RFTENDVQLAKEIQRMGKKFYFVRTKVDSD 154 (376)
T ss_dssp --HHHHHHHTTGGG-SEEEEEESS--S--HHHHHHHHHHHHTT-EEEEEE--HHHH
T ss_pred CCHHHHHHHccccccCEEEEEeCC--CCchhhHHHHHHHHHcCCcEEEEEeccccc
Confidence 53321 1 135567987777664 355566778888999999999999999984
No 321
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=97.98 E-value=4.7e-05 Score=83.97 Aligned_cols=142 Identities=18% Similarity=0.245 Sum_probs=87.9
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcC--eEEEEEcCCCCcc
Q 047363 9 IRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKD--YAINLIDSPGHMD 86 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~--~~inlIDTPGh~d 86 (876)
-.||.++|..|.||||+++.|+..... + ...+.+..+.-...++.+......+.-++ ..+|+|||||.-|
T Consensus 23 ~f~im~~G~sG~GKttfiNtL~~~~l~---~-----~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD 94 (373)
T COG5019 23 DFTIMVVGESGLGKTTFINTLFGTSLV---D-----ETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGD 94 (373)
T ss_pred ceEEEEecCCCCchhHHHHhhhHhhcc---C-----CCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccc
Confidence 368999999999999999999987211 1 00111122222344556665555555444 5689999999988
Q ss_pred chHH--------------HHHHH-------Hh-------cCeEEEEEcCC-CccccchHHHHHHhhhhcCCcEEEEeccc
Q 047363 87 FCSE--------------VSTAA-------RL-------SDGALVLVDAV-EGVHIQTHAVLRQSWIEKLTPCLVLNKID 137 (876)
Q Consensus 87 F~~e--------------~~~al-------~~-------aDgaIlVvDa~-egv~~~t~~~l~~~~~~~ip~ilviNKiD 137 (876)
|.+. ...++ |. .++++..+-++ +|+.+.....++.+. ..+-+|-||-|.|
T Consensus 95 ~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls-~~vNlIPVI~KaD 173 (373)
T COG5019 95 FIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLS-KRVNLIPVIAKAD 173 (373)
T ss_pred cccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHh-cccCeeeeeeccc
Confidence 7322 11111 11 26778888754 677777777766553 3567888999999
Q ss_pred ccccccccChHHHHHHHHHHHHHhh
Q 047363 138 RLISELKLTPLEAYNRLLRIVHEVN 162 (876)
Q Consensus 138 ~~~~e~~~~~~~~~~~l~~~l~~vn 162 (876)
.+..+ ...+...++...+.+-|
T Consensus 174 ~lT~~---El~~~K~~I~~~i~~~n 195 (373)
T COG5019 174 TLTDD---ELAEFKERIREDLEQYN 195 (373)
T ss_pred cCCHH---HHHHHHHHHHHHHHHhC
Confidence 98643 12344555555555433
No 322
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=97.97 E-value=2e-05 Score=87.50 Aligned_cols=88 Identities=17% Similarity=0.185 Sum_probs=52.1
Q ss_pred EEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeee------------eE-EEEE---EcCeE
Q 047363 12 ISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKS------------SS-IALH---YKDYA 75 (876)
Q Consensus 12 I~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~------------~~-i~~~---~~~~~ 75 (876)
|+|+|.+++|||||+++|+.. .-.+... .++ ..+...|+..-. .+ .... +....
T Consensus 1 i~ivG~pnvGKStLfn~lt~~--~~~~~~~-----pft---T~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~ 70 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLA--DVEIANY-----PFT---TIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVP 70 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCC--CCcccCC-----CCc---cccceeEEEEEecCCCchhhhhhhcccccccccCcCcce
Confidence 689999999999999999765 2111110 000 001111111000 00 0000 12357
Q ss_pred EEEEcCCCCc----cch---HHHHHHHHhcCeEEEEEcCCC
Q 047363 76 INLIDSPGHM----DFC---SEVSTAARLSDGALVLVDAVE 109 (876)
Q Consensus 76 inlIDTPGh~----dF~---~e~~~al~~aDgaIlVvDa~e 109 (876)
+.++||||.+ .+. ......++.||++++|||+..
T Consensus 71 i~l~D~aGlv~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 71 VELIDVAGLVPGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred EEEEECCCCCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 9999999984 333 356667999999999999974
No 323
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=97.97 E-value=1e-05 Score=76.00 Aligned_cols=100 Identities=23% Similarity=0.241 Sum_probs=67.0
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCC----C
Q 047363 9 IRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPG----H 84 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPG----h 84 (876)
++.|+++|.+|+|||||+++|-+. .-.. .++..+. |.+ =..||||| |
T Consensus 1 MKri~~vG~~gcGKTtL~q~L~G~--~~ly-----------------------kKTQAve--~~d--~~~IDTPGEy~~~ 51 (148)
T COG4917 1 MKRIAFVGQVGCGKTTLFQSLYGN--DTLY-----------------------KKTQAVE--FND--KGDIDTPGEYFEH 51 (148)
T ss_pred CceeEEecccccCchhHHHHhhcc--hhhh-----------------------cccceee--ccC--ccccCCchhhhhh
Confidence 367999999999999999999765 1100 0111222 222 13689999 4
Q ss_pred ccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccc
Q 047363 85 MDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 85 ~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~ 140 (876)
..........+..+|.+++|-.+.++.+.-.-.. +.-...|+|-+++|.|+..
T Consensus 52 ~~~Y~aL~tt~~dadvi~~v~~and~~s~f~p~f---~~~~~k~vIgvVTK~DLae 104 (148)
T COG4917 52 PRWYHALITTLQDADVIIYVHAANDPESRFPPGF---LDIGVKKVIGVVTKADLAE 104 (148)
T ss_pred hHHHHHHHHHhhccceeeeeecccCccccCCccc---ccccccceEEEEecccccc
Confidence 5556667777888999999998887754332221 1223457888999999983
No 324
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=97.97 E-value=3.7e-05 Score=75.21 Aligned_cols=114 Identities=21% Similarity=0.210 Sum_probs=77.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccC--hhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccc
Q 047363 10 RNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDY--LDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDF 87 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~--~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF 87 (876)
....+||.+-+|||+|+..+.....++.-++. .| .|+ +-.|.+.|.- .++.||||+|+..|
T Consensus 9 frlivigdstvgkssll~~ft~gkfaelsdpt-vg----vdffarlie~~pg~r------------iklqlwdtagqerf 71 (213)
T KOG0091|consen 9 FRLIVIGDSTVGKSSLLRYFTEGKFAELSDPT-VG----VDFFARLIELRPGYR------------IKLQLWDTAGQERF 71 (213)
T ss_pred EEEEEEcCCcccHHHHHHHHhcCcccccCCCc-cc----hHHHHHHHhcCCCcE------------EEEEEeeccchHHH
Confidence 34678899999999999988754222221111 01 111 1223334433 47899999999999
Q ss_pred hHHHHHHHHhcCeEEEEEcCCCccccchHHHHH-Hhh-h----hcCCcEEEEecccccc
Q 047363 88 CSEVSTAARLSDGALVLVDAVEGVHIQTHAVLR-QSW-I----EKLTPCLVLNKIDRLI 140 (876)
Q Consensus 88 ~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~-~~~-~----~~ip~ilviNKiD~~~ 140 (876)
.+-+.++.|.+-|+++|.|.+..-+......|- .+. . .++-+.||..|.|+..
T Consensus 72 rsitksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~S 130 (213)
T KOG0091|consen 72 RSITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQS 130 (213)
T ss_pred HHHHHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhh
Confidence 999999999999999999998776665555542 222 1 1233467899999974
No 325
>PRK09602 translation-associated GTPase; Reviewed
Probab=97.95 E-value=2.8e-05 Score=89.00 Aligned_cols=95 Identities=17% Similarity=0.149 Sum_probs=53.9
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhhCCCCccccc-------CCceeeccChhhhhhcceeeeeeEEE---E-EEcCeEEEE
Q 047363 10 RNISILAHVDHGKTTLADHLIAATGGGLLHPKL-------AGKLRFMDYLDEEQRRAITMKSSSIA---L-HYKDYAINL 78 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~-------~g~~~~~d~~~~E~~rgiti~~~~i~---~-~~~~~~inl 78 (876)
..|+|+|.+++|||||+++|+.. .-.+.... .|...+.+.-++.+- .....+.. . .+....+++
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~--~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~---~~~~~~~~~~~~~~~~~~~i~i 76 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLA--DVEIANYPFTTIDPNVGVAYVRVECPCKEL---GVKCNPRNGKCIDGTRFIPVEL 76 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC--cccccCCCCcceeeeeeeeeeccCCchhhh---hhhhccccccccCCcceeeEEE
Confidence 47999999999999999999765 22111100 011111010000000 00000000 0 011256899
Q ss_pred EcCCCCcc-------chHHHHHHHHhcCeEEEEEcCCC
Q 047363 79 IDSPGHMD-------FCSEVSTAARLSDGALVLVDAVE 109 (876)
Q Consensus 79 IDTPGh~d-------F~~e~~~al~~aDgaIlVvDa~e 109 (876)
+||||..+ ........++.||++++|||+..
T Consensus 77 ~D~aGl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~~ 114 (396)
T PRK09602 77 IDVAGLVPGAHEGRGLGNQFLDDLRQADALIHVVDASG 114 (396)
T ss_pred EEcCCcCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 99999653 33467778999999999999974
No 326
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=97.93 E-value=6.9e-06 Score=89.31 Aligned_cols=128 Identities=21% Similarity=0.248 Sum_probs=87.1
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCcee-eccChhhhhhcceeeeee--EE-----------------EE
Q 047363 10 RNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLR-FMDYLDEEQRRAITMKSS--SI-----------------AL 69 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~-~~d~~~~E~~rgiti~~~--~i-----------------~~ 69 (876)
-.|+++|.+++|||||+.-|.+. ..+. ..|..+ -+-....|.+-|-|.... .. ++
T Consensus 134 ~RVAVVGNVDAGKSTLLGVLTHg----eLDn-GRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~L 208 (641)
T KOG0463|consen 134 ARVAVVGNVDAGKSTLLGVLTHG----ELDN-GRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNL 208 (641)
T ss_pred EEEEEEecccCCcceeEeeeeec----cccc-CccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcc
Confidence 45899999999999999888543 1110 001110 112223333333332111 11 22
Q ss_pred EEc------CeEEEEEcCCCCccchHHHHHHHH--hcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEeccccccc
Q 047363 70 HYK------DYAINLIDSPGHMDFCSEVSTAAR--LSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLIS 141 (876)
Q Consensus 70 ~~~------~~~inlIDTPGh~dF~~e~~~al~--~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~~ 141 (876)
.|- ...|+|||.+||+.|...+.-++. .-|...++|.+..|+...|.+.+..+...++|+++|++|||.--+
T Consensus 209 dWvkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALaL~VPVfvVVTKIDMCPA 288 (641)
T KOG0463|consen 209 DWVKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALALHVPVFVVVTKIDMCPA 288 (641)
T ss_pred cceeeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccceeccHHhhhhhhhhcCcEEEEEEeeccCcH
Confidence 221 256999999999998766544443 358899999999999999999999999999999999999999866
Q ss_pred c
Q 047363 142 E 142 (876)
Q Consensus 142 e 142 (876)
+
T Consensus 289 N 289 (641)
T KOG0463|consen 289 N 289 (641)
T ss_pred H
Confidence 5
No 327
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.92 E-value=2e-05 Score=78.94 Aligned_cols=117 Identities=12% Similarity=0.103 Sum_probs=79.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccc
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDF 87 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF 87 (876)
.++.++++|..|.||||++.+.+.. ..... |. ..-|.........-..+..+++.|||.|.+.|
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltg----eFe~~------y~------at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~ 72 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTG----EFEKT------YP------ATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKK 72 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcc----cceec------cc------CcceeEEeeeeeecccCcEEEEeeecccceee
Confidence 4799999999999999999998744 21110 00 01123222211111112378999999999999
Q ss_pred hHHHHHHHHhcCeEEEEEcCCCccccchHHHHH-Hh--hhhcCCcEEEEecccccc
Q 047363 88 CSEVSTAARLSDGALVLVDAVEGVHIQTHAVLR-QS--WIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 88 ~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~-~~--~~~~ip~ilviNKiD~~~ 140 (876)
......+.-.+.+||+++|....+..+...-|. -+ ...++|++++.||.|-..
T Consensus 73 gglrdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~NiPiv~cGNKvDi~~ 128 (216)
T KOG0096|consen 73 GGLRDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVRENIPIVLCGNKVDIKA 128 (216)
T ss_pred cccccccEEecceeEEEeeeeehhhhhcchHHHHHHHHHhcCCCeeeeccceeccc
Confidence 877766677778999999998776655544332 22 245789999999999764
No 328
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=97.92 E-value=3.8e-05 Score=84.90 Aligned_cols=62 Identities=16% Similarity=0.269 Sum_probs=41.1
Q ss_pred CeEEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEeccccccc
Q 047363 73 DYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLIS 141 (876)
Q Consensus 73 ~~~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~~ 141 (876)
++.+.||||||... .....+..+|.++++.+...+... ..+ ... ..++|.++|+||+|+...
T Consensus 126 g~D~viidT~G~~~---~e~~i~~~aD~i~vv~~~~~~~el--~~~-~~~-l~~~~~ivv~NK~Dl~~~ 187 (300)
T TIGR00750 126 GYDVIIVETVGVGQ---SEVDIANMADTFVVVTIPGTGDDL--QGI-KAG-LMEIADIYVVNKADGEGA 187 (300)
T ss_pred CCCEEEEeCCCCch---hhhHHHHhhceEEEEecCCccHHH--HHH-HHH-HhhhccEEEEEcccccch
Confidence 68999999999653 223457778998888655433211 111 111 246889999999999854
No 329
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=97.91 E-value=0.00011 Score=86.90 Aligned_cols=115 Identities=16% Similarity=0.111 Sum_probs=67.5
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccch
Q 047363 9 IRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFC 88 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~ 88 (876)
..+|+++|.+|+||||++|+|++. ....... . ..+.| ....+...+.+..+++|||||..+..
T Consensus 118 slrIvLVGKTGVGKSSLINSILGe--kvf~vss---------~-----~~~TT-r~~ei~~~idG~~L~VIDTPGL~dt~ 180 (763)
T TIGR00993 118 SLNILVLGKSGVGKSATINSIFGE--VKFSTDA---------F-----GMGTT-SVQEIEGLVQGVKIRVIDTPGLKSSA 180 (763)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcc--ccccccC---------C-----CCCce-EEEEEEEEECCceEEEEECCCCCccc
Confidence 468999999999999999999876 3221110 0 01111 22223344567899999999988742
Q ss_pred ------HH----HHHHHH--hcCeEEEEEcCCCccc-cchHHHHHHhhh-----hcCCcEEEEecccccc
Q 047363 89 ------SE----VSTAAR--LSDGALVLVDAVEGVH-IQTHAVLRQSWI-----EKLTPCLVLNKIDRLI 140 (876)
Q Consensus 89 ------~e----~~~al~--~aDgaIlVvDa~egv~-~~t~~~l~~~~~-----~~ip~ilviNKiD~~~ 140 (876)
.+ +...+. ..|++|+|......-. .....+++.+.+ .=.-.|||++..|.+.
T Consensus 181 ~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 181 SDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred cchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 12 222333 2687777765431111 122233443321 1235788999999885
No 330
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.90 E-value=6.5e-05 Score=76.26 Aligned_cols=66 Identities=17% Similarity=0.155 Sum_probs=54.4
Q ss_pred cCeEEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEeccccc
Q 047363 72 KDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRL 139 (876)
Q Consensus 72 ~~~~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~ 139 (876)
..|.+.+|||||... .....++..+|.+|+|+.+..........+++.+.+.++|..+|+||+|..
T Consensus 91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~~~~~~~~~~~~~l~~~~~~~~vV~N~~~~~ 156 (179)
T cd03110 91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTPSGLHDLERAVELVRHFGIPVGVVINKYDLN 156 (179)
T ss_pred cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCcccHHHHHHHHHHHHHcCCCEEEEEeCCCCC
Confidence 578999999997653 467788899999999999986655566777888888889999999999864
No 331
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=97.88 E-value=3.1e-06 Score=79.67 Aligned_cols=112 Identities=23% Similarity=0.258 Sum_probs=80.4
Q ss_pred EEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccchHHHHH
Q 047363 14 ILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFCSEVST 93 (876)
Q Consensus 14 IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~~e~~~ 93 (876)
++|.++.|||.|+-++- .|.. .+|.+. ..-||......+.+.....++.+|||.|+..|.+-+..
T Consensus 2 llgds~~gktcllir~k----dgaf---l~~~fi--------stvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~a 66 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFK----DGAF---LAGNFI--------STVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHA 66 (192)
T ss_pred ccccCccCceEEEEEec----cCce---ecCcee--------eeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHh
Confidence 68999999999875542 2221 112211 01256666666666666788999999999999999999
Q ss_pred HHHhcCeEEEEEcCCCccccchHHHH-HH---hhhhcCCcEEEEecccccc
Q 047363 94 AARLSDGALVLVDAVEGVHIQTHAVL-RQ---SWIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 94 al~~aDgaIlVvDa~egv~~~t~~~l-~~---~~~~~ip~ilviNKiD~~~ 140 (876)
+.|.+|+.+++.|.....+...-+.| .+ -.++.+...++.||+|+..
T Consensus 67 yyrda~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~ 117 (192)
T KOG0083|consen 67 YYRDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAH 117 (192)
T ss_pred hhcccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccch
Confidence 99999999999999876655444433 22 2345678889999999853
No 332
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.85 E-value=6.9e-05 Score=75.69 Aligned_cols=66 Identities=17% Similarity=0.271 Sum_probs=41.5
Q ss_pred CeEEEEEcCCCCccchHHHHHHH------HhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccc
Q 047363 73 DYAINLIDSPGHMDFCSEVSTAA------RLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 73 ~~~inlIDTPGh~dF~~e~~~al------~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~ 140 (876)
++.+.+|||||...+..+....+ ...|++++|+|+..+... .....+.....+ ..-+|+||+|...
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~-~~~~~~~~~~~~-~~~viltk~D~~~ 153 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDA-VNQAKAFNEALG-ITGVILTKLDGDA 153 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHH-HHHHHHHHhhCC-CCEEEEECCcCCC
Confidence 57799999999875433333222 237999999999643321 123333333344 3568889999874
No 333
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.84 E-value=4.9e-06 Score=80.68 Aligned_cols=115 Identities=17% Similarity=0.158 Sum_probs=73.0
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEc---------CeEEEEEc
Q 047363 10 RNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYK---------DYAINLID 80 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~---------~~~inlID 80 (876)
..+..+|.+|+||||++-+.... ....+.. + .-||.+....+-..-. ...+.+||
T Consensus 10 ikfLaLGDSGVGKTs~Ly~YTD~----~F~~qFI---s---------TVGIDFreKrvvY~s~gp~g~gr~~rihLQlWD 73 (219)
T KOG0081|consen 10 IKFLALGDSGVGKTSFLYQYTDG----KFNTQFI---S---------TVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWD 73 (219)
T ss_pred HHHHhhccCCCCceEEEEEecCC----cccceeE---E---------EeecccccceEEEeccCCCCCCcceEEEEeeec
Confidence 34556899999999987655432 2111100 0 0122222222211111 24678999
Q ss_pred CCCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHH-HHh----hhhcCCcEEEEecccccc
Q 047363 81 SPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVL-RQS----WIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 81 TPGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l-~~~----~~~~ip~ilviNKiD~~~ 140 (876)
|+|++.|.+-+.+.+|.|=|.++++|.+..-+....+-| .++ .-++--+||+.||.|+..
T Consensus 74 TAGQERFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~ 138 (219)
T KOG0081|consen 74 TAGQERFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLED 138 (219)
T ss_pred cccHHHHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhh
Confidence 999999999999999999999999998865444333322 332 234556778999999975
No 334
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=97.84 E-value=6.2e-05 Score=79.95 Aligned_cols=116 Identities=16% Similarity=0.150 Sum_probs=82.4
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCC--
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGH-- 84 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh-- 84 (876)
.+-..++++|.+|+|||+|++.+++. ...-. .++. ..|-| ..+....-+..+.++|.||.
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~--k~~~~---t~k~----------K~g~T---q~in~f~v~~~~~~vDlPG~~~ 195 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRV--KNIAD---TSKS----------KNGKT---QAINHFHVGKSWYEVDLPGYGR 195 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhh--hhhhh---hcCC----------CCccc---eeeeeeeccceEEEEecCCccc
Confidence 34567999999999999999999876 21110 0000 12333 23444455789999999992
Q ss_pred --------ccchHHHHHHHH---hcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccc
Q 047363 85 --------MDFCSEVSTAAR---LSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 85 --------~dF~~e~~~al~---~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~ 140 (876)
.|+...+..++- ..=.+.+++|++-++....-..+.++.+.++|+.+|+||||+..
T Consensus 196 a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~~VP~t~vfTK~DK~k 262 (320)
T KOG2486|consen 196 AGYGFELPADWDKFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGENNVPMTSVFTKCDKQK 262 (320)
T ss_pred ccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhhcCCCeEEeeehhhhhh
Confidence 234444444432 33457888999999999888899999999999999999999974
No 335
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.75 E-value=0.0002 Score=78.05 Aligned_cols=125 Identities=18% Similarity=0.152 Sum_probs=68.8
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChh-----hh------hhcceeeeeeEE-----EE-
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLD-----EE------QRRAITMKSSSI-----AL- 69 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~-----~E------~~rgiti~~~~i-----~~- 69 (876)
...+.|+++|++|+||||++-.|... .. . ...++.+.|... .| ..+|+.+-.... ..
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~--l~---~-~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~ 143 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANK--LK---K-QGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVA 143 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH--HH---h-cCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHH
Confidence 34688999999999999999988765 11 0 011232222211 12 223433211000 00
Q ss_pred -------EEcCeEEEEEcCCCCccchHHHH-------HHHH-----hcCeEEEEEcCCCccccchHHHHHHhhhhcCCcE
Q 047363 70 -------HYKDYAINLIDSPGHMDFCSEVS-------TAAR-----LSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPC 130 (876)
Q Consensus 70 -------~~~~~~inlIDTPGh~dF~~e~~-------~al~-----~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~i 130 (876)
...++.+.||||||......... .... ..|..++|+|+..|-. .........+.--+.-
T Consensus 144 ~~~l~~~~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~--~~~~~~~f~~~~~~~g 221 (272)
T TIGR00064 144 FDAIQKAKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQN--ALEQAKVFNEAVGLTG 221 (272)
T ss_pred HHHHHHHHHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHH--HHHHHHHHHhhCCCCE
Confidence 02368999999999876433322 2222 2799999999975422 1111111111112456
Q ss_pred EEEeccccc
Q 047363 131 LVLNKIDRL 139 (876)
Q Consensus 131 lviNKiD~~ 139 (876)
+++||+|-.
T Consensus 222 ~IlTKlDe~ 230 (272)
T TIGR00064 222 IILTKLDGT 230 (272)
T ss_pred EEEEccCCC
Confidence 899999985
No 336
>cd01693 mtEFG2_like_IV mtEF-G2 domain IV. This subfamily is a part the of mitochondrial transcriptional elongation factor, mtEF-G2. Mitochondrial translation is crucial for maintaining mitochondrial function and mutations in this system lead to a breakdown in the respiratory chain-oxidative phosphorylation system and to impaired maintenance of mitochondrial DNA. In complex with GTP, EF-G promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site of the small subunit of ribosome and the mRNA is shifted one codon relative to the ribosome.
Probab=97.74 E-value=0.00017 Score=68.72 Aligned_cols=40 Identities=18% Similarity=0.321 Sum_probs=37.1
Q ss_pred hhhhHHHHHHHHHHHhcCCCCCCCCcceeEEEEEEEeecc
Q 047363 802 AQSLESSIVSGFQLATASGPLCDEPMWGLAFIVEAYISSN 841 (876)
Q Consensus 802 ~~~~~~siv~GFq~at~~GPLceEp~~gv~f~i~d~~~~~ 841 (876)
..++.++|..|++.|...|||+.-||.+|++.|.++..|+
T Consensus 58 p~~~~~ai~~g~~~al~~Gpl~G~pv~~v~V~l~~~~~~~ 97 (120)
T cd01693 58 LKRIQEAVENGVHSALLQGPLLGFPVQDVAITLHSLTIGP 97 (120)
T ss_pred hHHHHHHHHHHHHHHHHcCCccCCceeeEEEEEEeCCcCC
Confidence 3579999999999999999999999999999999998774
No 337
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=97.74 E-value=0.00015 Score=83.89 Aligned_cols=117 Identities=18% Similarity=0.155 Sum_probs=78.4
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccc
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDF 87 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF 87 (876)
+--.|+++|.-|+|||||+-+|+..++--.+.++.. -|+|- ..+.-......++||+...+-
T Consensus 8 kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~---------------~i~IP---advtPe~vpt~ivD~ss~~~~ 69 (625)
T KOG1707|consen 8 KDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLP---------------RILIP---ADVTPENVPTSIVDTSSDSDD 69 (625)
T ss_pred cceEEEEECCCCccHHHHHHHHHhhhccccccccCC---------------ccccC---CccCcCcCceEEEecccccch
Confidence 334588999999999999999998854433333211 12221 111112234789999987776
Q ss_pred hHHHHHHHHhcCeEEEEEcCCCc-----cccchHHHHHHhh--hhcCCcEEEEecccccccc
Q 047363 88 CSEVSTAARLSDGALVLVDAVEG-----VHIQTHAVLRQSW--IEKLTPCLVLNKIDRLISE 142 (876)
Q Consensus 88 ~~e~~~al~~aDgaIlVvDa~eg-----v~~~t~~~l~~~~--~~~ip~ilviNKiD~~~~e 142 (876)
...+...++.||.+++|.++.+. ++..=..++++.. -.++|+|||.||.|....+
T Consensus 70 ~~~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~ 131 (625)
T KOG1707|consen 70 RLCLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNE 131 (625)
T ss_pred hHHHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCcccc
Confidence 67778899999999999976643 3322233444442 3578999999999997544
No 338
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.73 E-value=0.0002 Score=82.20 Aligned_cols=122 Identities=19% Similarity=0.192 Sum_probs=67.9
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhhC-CCCcccccCCceee--ccChh---hhh------hcceeeeeeEEEE-------
Q 047363 9 IRNISILAHVDHGKTTLADHLIAATG-GGLLHPKLAGKLRF--MDYLD---EEQ------RRAITMKSSSIAL------- 69 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~t~-~g~i~~~~~g~~~~--~d~~~---~E~------~rgiti~~~~i~~------- 69 (876)
.+.|+++|..|+||||++..|..... .|. ++.+ .|... .++ ..++.+......-
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~-------kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~ 172 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGF-------KPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIAS 172 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCC-------CEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHH
Confidence 46799999999999999999976410 111 1211 12211 111 1233221100000
Q ss_pred ------EEcCeEEEEEcCCCCccch----HHHHHHHHh--cCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEeccc
Q 047363 70 ------HYKDYAINLIDSPGHMDFC----SEVSTAARL--SDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKID 137 (876)
Q Consensus 70 ------~~~~~~inlIDTPGh~dF~----~e~~~al~~--aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD 137 (876)
.-.++.+.||||||..... .++....+. .|-+++|+|+.-|-.. ....+...+.--+.-+++||+|
T Consensus 173 ~~l~~~~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a--~~~a~~F~~~~~~~g~IlTKlD 250 (429)
T TIGR01425 173 EGVEKFKKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAA--EAQAKAFKDSVDVGSVIITKLD 250 (429)
T ss_pred HHHHHHHhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhH--HHHHHHHHhccCCcEEEEECcc
Confidence 0025899999999977553 333333222 4678999999866332 2222322222235678999999
Q ss_pred cc
Q 047363 138 RL 139 (876)
Q Consensus 138 ~~ 139 (876)
-.
T Consensus 251 ~~ 252 (429)
T TIGR01425 251 GH 252 (429)
T ss_pred CC
Confidence 85
No 339
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.72 E-value=0.00014 Score=71.96 Aligned_cols=58 Identities=21% Similarity=0.367 Sum_probs=41.0
Q ss_pred CeEEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEeccc
Q 047363 73 DYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKID 137 (876)
Q Consensus 73 ~~~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD 137 (876)
++.+.||||||.. .....+++.||-+|+|+....+..... ++ ..-...--++++||+|
T Consensus 91 ~~D~iiIDtaG~~---~~~~~~~~~Ad~~ivv~tpe~~D~y~~---~k-~~~~~~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVG---QSEVDIASMADTTVVVMAPGAGDDIQA---IK-AGIMEIADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccC---hhhhhHHHhCCEEEEEECCCchhHHHH---hh-hhHhhhcCEEEEeCCC
Confidence 6899999999954 445569999999999988763332222 22 2333456789999998
No 340
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.71 E-value=0.00027 Score=78.56 Aligned_cols=145 Identities=22% Similarity=0.243 Sum_probs=89.8
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhhCCCCcc--cccCCceeec--cChhhhhhcceeeeeeEEEEEEc------------
Q 047363 9 IRNISILAHVDHGKTTLADHLIAATGGGLLH--PKLAGKLRFM--DYLDEEQRRAITMKSSSIALHYK------------ 72 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~--~~~~g~~~~~--d~~~~E~~rgiti~~~~i~~~~~------------ 72 (876)
|+...|-|..|+|||||+++|+...+...+. ....|.+.+. +.....-+.-..+...++.+..+
T Consensus 1 ipVtvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~ 80 (323)
T COG0523 1 IPVTVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLR 80 (323)
T ss_pred CCEEEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHh
Confidence 4667889999999999999999984411111 1123443332 12222333355677777877733
Q ss_pred ---CeEEEEEcCCCCccchHH--------HHHHHHhcCeEEEEEcCCCccccch---HHHHHHhhhhcCCcEEEEecccc
Q 047363 73 ---DYAINLIDSPGHMDFCSE--------VSTAARLSDGALVLVDAVEGVHIQT---HAVLRQSWIEKLTPCLVLNKIDR 138 (876)
Q Consensus 73 ---~~~inlIDTPGh~dF~~e--------~~~al~~aDgaIlVvDa~egv~~~t---~~~l~~~~~~~ip~ilviNKiD~ 138 (876)
.....+|-|-|..+-..- .....-..|++|-|||+........ ....+|+ ..-=++++||.|+
T Consensus 81 ~~~~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qi---a~AD~ivlNK~Dl 157 (323)
T COG0523 81 RRDRPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQL---AFADVIVLNKTDL 157 (323)
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHH---HhCcEEEEecccC
Confidence 356899999998775322 2223334588999999986554322 1222222 2345899999999
Q ss_pred cccccccChHHHHHHHHHHHHHhhh
Q 047363 139 LISELKLTPLEAYNRLLRIVHEVNG 163 (876)
Q Consensus 139 ~~~e~~~~~~~~~~~l~~~l~~vn~ 163 (876)
...+ + ...++..+.++|.
T Consensus 158 v~~~------~-l~~l~~~l~~lnp 175 (323)
T COG0523 158 VDAE------E-LEALEARLRKLNP 175 (323)
T ss_pred CCHH------H-HHHHHHHHHHhCC
Confidence 8643 2 5566777777764
No 341
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.70 E-value=0.00022 Score=79.40 Aligned_cols=121 Identities=19% Similarity=0.180 Sum_probs=69.9
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChh-----------hhhhcceeeeeeEEE--------
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLD-----------EEQRRAITMKSSSIA-------- 68 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~-----------~E~~rgiti~~~~i~-------- 68 (876)
.-..|+++|+.|+||||++..|..... . ..+++.+.+... ....+++.+-.....
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~-----~-~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~ 186 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYK-----A-QGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAF 186 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH-----h-cCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHH
Confidence 457899999999999999999977611 0 112333322111 122344443211000
Q ss_pred -----EEEcCeEEEEEcCCCCccch----HHHHHHHHh--------cCeEEEEEcCCCccccchHHHHHHhhhh--c-CC
Q 047363 69 -----LHYKDYAINLIDSPGHMDFC----SEVSTAARL--------SDGALVLVDAVEGVHIQTHAVLRQSWIE--K-LT 128 (876)
Q Consensus 69 -----~~~~~~~inlIDTPGh~dF~----~e~~~al~~--------aDgaIlVvDa~egv~~~t~~~l~~~~~~--~-ip 128 (876)
....++.+.||||||..... .|.....+. .+..++|+|+..|... +.++... . -+
T Consensus 187 ~~l~~~~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~-----~~~a~~f~~~~~~ 261 (318)
T PRK10416 187 DAIQAAKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNA-----LSQAKAFHEAVGL 261 (318)
T ss_pred HHHHHHHhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHH-----HHHHHHHHhhCCC
Confidence 01236889999999976542 344444432 4678999999865321 1222222 1 24
Q ss_pred cEEEEeccccc
Q 047363 129 PCLVLNKIDRL 139 (876)
Q Consensus 129 ~ilviNKiD~~ 139 (876)
.-+|+||+|..
T Consensus 262 ~giIlTKlD~t 272 (318)
T PRK10416 262 TGIILTKLDGT 272 (318)
T ss_pred CEEEEECCCCC
Confidence 56899999964
No 342
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=97.70 E-value=1.1e-07 Score=111.14 Aligned_cols=197 Identities=5% Similarity=-0.225 Sum_probs=131.9
Q ss_pred CCCCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEc------CeEEEE
Q 047363 5 DTRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYK------DYAINL 78 (876)
Q Consensus 5 ~~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~------~~~inl 78 (876)
+.+.|+ +.--|.|+||++++.+.... .+.++...++++.+.+....++.++.++....+..... ...-+.
T Consensus 176 ~~~~i~--d~~~~F~p~kgNVif~~A~~--~~~f~~~~fak~~~~kl~~k~~al~k~lwgd~y~~~ktk~I~~~~~~~gr 251 (887)
T KOG0467|consen 176 NWENIE--DEEITFGPEDGNVIFASALD--GWGFGIEQFAKFYAKKLGLKDAALLKFLWGDRYIDPKTKRICEGKKLKGR 251 (887)
T ss_pred hhhhhh--hcceeecCCCCcEEEEEecc--cccccHHHHHHHHHHhcChhhhhhhhhhccceeecchhhhhhcccCcccC
Confidence 445566 56668999999999888776 77777666777777777778888888876665544422 112233
Q ss_pred EcCCCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccccccccChHHHHHHHHHHH
Q 047363 79 IDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLISELKLTPLEAYNRLLRIV 158 (876)
Q Consensus 79 IDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~~e~~~~~~~~~~~l~~~l 158 (876)
.+.++|..|...+..+-+.+|.. .+.+..+++..++..++.+-.+ .++.|+|++-...-+..+..++.++...+
T Consensus 252 kplf~~~vle~lw~iy~~~~~~~-d~~~~~ki~k~l~i~~l~r~~~-----~ll~~im~~wLPls~avll~a~~~lp~pl 325 (887)
T KOG0467|consen 252 KPLFVQFVLENLWRIYELALKSR-DKEKLEKIAKSLNIKLLPRDLR-----NLLDAIMSTWLPLSDAVLLTVVYKLPDPI 325 (887)
T ss_pred CCccceeehhhHHHHHHHHhccc-hHHHHHHHhhhcccccchHHHH-----HHHHHHHHhhcccccchHHHHHHhcCCHH
Confidence 99999999999999999999887 5566667777777776654433 56778888866555566777888887777
Q ss_pred HHhhhhhhhccccccccccccccccCcccccccccccccccccccccCCCCcEEEEeccCCCccchHHHHH
Q 047363 159 HEVNGIMSAYKSEKYLSDVDSLLSVPSEKLGDENLQFIEDDEEDTFQPQKGNVAFVCGLDGWGFSISEFAE 229 (876)
Q Consensus 159 ~~vn~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~~gnV~f~Sa~~Gw~ftl~~fa~ 229 (876)
++.+........... . ..+.... ....-++..|+|++.+++.+|.+.-..++.
T Consensus 326 ~~~~~r~~rl~~s~~-~-------------~~~~~~~----~~v~~~~~~~pviv~Vskm~~~~~k~lp~~ 378 (887)
T KOG0467|consen 326 RSQAERGLRLLSSSD-H-------------RSDPPLT----KAVKSCSKESPVLVFVSKMLATPLKYLPQS 378 (887)
T ss_pred HHHHHhhceeccCcc-c-------------ccChHhh----hhhhcCCCCCcEEEEEEeeeccchhhCchh
Confidence 766554433322110 0 0000000 001117788999999999999876655544
No 343
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=97.67 E-value=0.00023 Score=75.74 Aligned_cols=127 Identities=23% Similarity=0.320 Sum_probs=70.9
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhC-CC----Cc--c--cccCCceeeccChhh---hhhcceeeeeeEEEEEE---
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATG-GG----LL--H--PKLAGKLRFMDYLDE---EQRRAITMKSSSIALHY--- 71 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~-~g----~i--~--~~~~g~~~~~d~~~~---E~~rgiti~~~~i~~~~--- 71 (876)
.+...|+|.|++|+|||||++.|....- .| ++ + +...|..-.-|.... ....|+-|.+.+..=..
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGl 106 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGL 106 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHH
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCc
Confidence 3567899999999999999999987610 11 11 0 111111111121111 12234444332211111
Q ss_pred -------------cCeEEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCccccchHH--HHHHhhhhcCCcEEEEecc
Q 047363 72 -------------KDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHA--VLRQSWIEKLTPCLVLNKI 136 (876)
Q Consensus 72 -------------~~~~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~--~l~~~~~~~ip~ilviNKi 136 (876)
-+|.+.||.|-|--. .|+.- ...+|..++|+-+..|...|..+ ++ .+.=++|+||.
T Consensus 107 s~~t~~~v~ll~aaG~D~IiiETVGvGQ--sE~~I-~~~aD~~v~v~~Pg~GD~iQ~~KaGim------EiaDi~vVNKa 177 (266)
T PF03308_consen 107 SRATRDAVRLLDAAGFDVIIIETVGVGQ--SEVDI-ADMADTVVLVLVPGLGDEIQAIKAGIM------EIADIFVVNKA 177 (266)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEEEESSST--HHHHH-HTTSSEEEEEEESSTCCCCCTB-TTHH------HH-SEEEEE--
T ss_pred cHhHHHHHHHHHHcCCCEEEEeCCCCCc--cHHHH-HHhcCeEEEEecCCCccHHHHHhhhhh------hhccEEEEeCC
Confidence 168999999999543 33333 67899999999998888877643 33 24679999999
Q ss_pred cccccc
Q 047363 137 DRLISE 142 (876)
Q Consensus 137 D~~~~e 142 (876)
|+..++
T Consensus 178 D~~gA~ 183 (266)
T PF03308_consen 178 DRPGAD 183 (266)
T ss_dssp SHHHHH
T ss_pred ChHHHH
Confidence 988764
No 344
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.67 E-value=0.00023 Score=79.14 Aligned_cols=140 Identities=16% Similarity=0.236 Sum_probs=83.6
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcC--eEEEEEcCCCCccc
Q 047363 10 RNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKD--YAINLIDSPGHMDF 87 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~--~~inlIDTPGh~dF 87 (876)
.++.++|..|.|||||+|.|+...+.+.- .+ ........+...+......+.-++ ..+++|||||.-|+
T Consensus 22 ftlmvvG~sGlGKsTfiNsLf~~~l~~~~--------~~-~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~ 92 (366)
T KOG2655|consen 22 FTLMVVGESGLGKSTFINSLFLTDLSGNR--------EV-PGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDA 92 (366)
T ss_pred eEEEEecCCCccHHHHHHHHHhhhccCCc--------cc-CCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCccc
Confidence 57999999999999999999877222210 00 111111222334444444443333 56799999998886
Q ss_pred hHH--------------HHHHH-----------H--hcCeEEEEEcCC-CccccchHHHHHHhhhhcCCcEEEEeccccc
Q 047363 88 CSE--------------VSTAA-----------R--LSDGALVLVDAV-EGVHIQTHAVLRQSWIEKLTPCLVLNKIDRL 139 (876)
Q Consensus 88 ~~e--------------~~~al-----------~--~aDgaIlVvDa~-egv~~~t~~~l~~~~~~~ip~ilviNKiD~~ 139 (876)
.+. ...++ . ..++++..+... +|+.+.....++.+ ..++.+|-||-|.|.+
T Consensus 93 vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l-~~~vNiIPVI~KaD~l 171 (366)
T KOG2655|consen 93 VDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKL-SKKVNLIPVIAKADTL 171 (366)
T ss_pred ccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHH-hccccccceeeccccC
Confidence 321 11222 1 246788888865 56777776666554 3467888899999998
Q ss_pred ccccccChHHHHHHHHHHHHHhh
Q 047363 140 ISELKLTPLEAYNRLLRIVHEVN 162 (876)
Q Consensus 140 ~~e~~~~~~~~~~~l~~~l~~vn 162 (876)
..+- ......++...+++.|
T Consensus 172 T~~E---l~~~K~~I~~~i~~~n 191 (366)
T KOG2655|consen 172 TKDE---LNQFKKRIRQDIEEHN 191 (366)
T ss_pred CHHH---HHHHHHHHHHHHHHcC
Confidence 6531 2233444444444433
No 345
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=97.66 E-value=0.00068 Score=70.54 Aligned_cols=124 Identities=20% Similarity=0.229 Sum_probs=71.8
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEc--CeEEEEEcCCCCcc
Q 047363 9 IRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYK--DYAINLIDSPGHMD 86 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~--~~~inlIDTPGh~d 86 (876)
-.||.++|.+|.|||||++.|... . +... ...|....-...-+.+++..-.+.-+ ..++++|||||.-|
T Consensus 46 ~FNIMVVgqSglgkstlinTlf~s--~--v~~~-----s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGD 116 (336)
T KOG1547|consen 46 DFNIMVVGQSGLGKSTLINTLFKS--H--VSDS-----SSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGD 116 (336)
T ss_pred ceEEEEEecCCCCchhhHHHHHHH--H--Hhhc-----cCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCccc
Confidence 379999999999999999999876 1 1110 01111111111223344333333333 35789999999887
Q ss_pred ch--------------HHHHHHHH----------h----cCeEEEEEcCC-CccccchHHHHHHhhhhcCCcEEEEeccc
Q 047363 87 FC--------------SEVSTAAR----------L----SDGALVLVDAV-EGVHIQTHAVLRQSWIEKLTPCLVLNKID 137 (876)
Q Consensus 87 F~--------------~e~~~al~----------~----aDgaIlVvDa~-egv~~~t~~~l~~~~~~~ip~ilviNKiD 137 (876)
+. .....+++ . .+++++.+.+. +...+...+.++.+-+ -+.+|-||-|.|
T Consensus 117 qInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~-vvNvvPVIakaD 195 (336)
T KOG1547|consen 117 QINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTE-VVNVVPVIAKAD 195 (336)
T ss_pred ccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhh-hheeeeeEeecc
Confidence 62 11222222 1 35777778776 2344555555554432 245677899999
Q ss_pred ccccc
Q 047363 138 RLISE 142 (876)
Q Consensus 138 ~~~~e 142 (876)
-+..+
T Consensus 196 tlTle 200 (336)
T KOG1547|consen 196 TLTLE 200 (336)
T ss_pred cccHH
Confidence 88654
No 346
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.61 E-value=0.00053 Score=75.20 Aligned_cols=133 Identities=20% Similarity=0.216 Sum_probs=86.7
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhhCCCCc-ccc--cCCceeeccChhhhhhcceeeeeeEEEEEEc------------
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAATGGGLL-HPK--LAGKLRFMDYLDEEQRRAITMKSSSIALHYK------------ 72 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i-~~~--~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~------------ 72 (876)
.-.-|.++|+-..||||+++.|+.....|.- .+. ...-+.++.-..++.-.|-+....+ ...+.
T Consensus 57 ~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~-~~pF~gL~~FG~aflnR 135 (532)
T KOG1954|consen 57 AKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDA-KKPFRGLNKFGNAFLNR 135 (532)
T ss_pred cCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecC-CCchhhhhhhHHHHHHH
Confidence 4467899999999999999999987433321 000 0001122222222222222211000 00000
Q ss_pred ----------CeEEEEEcCCCC-----------ccchHHHHHHHHhcCeEEEEEcCCC-ccccchHHHHHHhhhhcCCcE
Q 047363 73 ----------DYAINLIDSPGH-----------MDFCSEVSTAARLSDGALVLVDAVE-GVHIQTHAVLRQSWIEKLTPC 130 (876)
Q Consensus 73 ----------~~~inlIDTPGh-----------~dF~~e~~~al~~aDgaIlVvDa~e-gv~~~t~~~l~~~~~~~ip~i 130 (876)
-..|+||||||. .||.+-.......||.+++++|+.. .++..+.+++.+++-..=.+=
T Consensus 136 f~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~EdkiR 215 (532)
T KOG1954|consen 136 FMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGHEDKIR 215 (532)
T ss_pred HHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCCcceeE
Confidence 146999999994 4788888888899999999999863 567778889999887767788
Q ss_pred EEEeccccccc
Q 047363 131 LVLNKIDRLIS 141 (876)
Q Consensus 131 lviNKiD~~~~ 141 (876)
+|+||.|....
T Consensus 216 VVLNKADqVdt 226 (532)
T KOG1954|consen 216 VVLNKADQVDT 226 (532)
T ss_pred EEeccccccCH
Confidence 99999999864
No 347
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=97.61 E-value=0.00013 Score=82.71 Aligned_cols=117 Identities=26% Similarity=0.294 Sum_probs=70.6
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeee-EEEEEEcCeEEEEEcCCCCc
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSS-SIALHYKDYAINLIDSPGHM 85 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~-~i~~~~~~~~inlIDTPGh~ 85 (876)
...|.++++|.+|+||||+++.+... .-.+.+. -.|.++- ...+.++=..|.+|||||.-
T Consensus 166 p~trTlllcG~PNVGKSSf~~~vtra--dvevqpY-----------------aFTTksL~vGH~dykYlrwQViDTPGIL 226 (620)
T KOG1490|consen 166 PNTRTLLVCGYPNVGKSSFNNKVTRA--DDEVQPY-----------------AFTTKLLLVGHLDYKYLRWQVIDTPGIL 226 (620)
T ss_pred CCcCeEEEecCCCCCcHhhccccccc--ccccCCc-----------------ccccchhhhhhhhhheeeeeecCCcccc
Confidence 45799999999999999998877654 2111110 1111111 12334444579999999977
Q ss_pred cch------HH--HHHHHHhc-CeEEEEEcCCCccccchHH---HHHHhh--hhcCCcEEEEecccccccc
Q 047363 86 DFC------SE--VSTAARLS-DGALVLVDAVEGVHIQTHA---VLRQSW--IEKLTPCLVLNKIDRLISE 142 (876)
Q Consensus 86 dF~------~e--~~~al~~a-DgaIlVvDa~egv~~~t~~---~l~~~~--~~~ip~ilviNKiD~~~~e 142 (876)
|-- -| ...|+... -++++++|.++.+....+. ++..+. =.+.|.|+|+||+|....+
T Consensus 227 D~plEdrN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~e 297 (620)
T KOG1490|consen 227 DRPEEDRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMRPE 297 (620)
T ss_pred CcchhhhhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccCcc
Confidence 642 12 23344333 2577888987644332222 233322 2478999999999998654
No 348
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.60 E-value=0.00025 Score=70.95 Aligned_cols=123 Identities=22% Similarity=0.247 Sum_probs=66.4
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhhCCCC-cc--cccCCceeeccChhhh-h-hcceeeeeeEEEEEE--------------
Q 047363 11 NISILAHVDHGKTTLADHLIAATGGGL-LH--PKLAGKLRFMDYLDEE-Q-RRAITMKSSSIALHY-------------- 71 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~t~~g~-i~--~~~~g~~~~~d~~~~E-~-~rgiti~~~~i~~~~-------------- 71 (876)
-+.++|..|+|||||+++++.... +. +. ....|...+ |..... . .+-+.+...++.+..
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~~~-~~~~~~i~~~~G~~~~-d~~~~~~~~~~v~~l~~GCiCC~~~~~l~~~l~~l~~~ 79 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTEQH-GRKIAVIENEFGEVGI-DNQLVVDTDEEIIEMNNGCICCTVRGDLIRALLDLLER 79 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhccc-CCcEEEEecCCCccch-hHHHHhCCCceEEEeCCCEeEeeCchhHHHHHHHHHHH
Confidence 467999999999999999987621 11 00 001122211 111111 0 111233333332221
Q ss_pred -----cCeEEEEEcCCCCccchHH--------HHHHHHhcCeEEEEEcCCCccccc--hHHHHHHhhhhcCCcEEEEecc
Q 047363 72 -----KDYAINLIDSPGHMDFCSE--------VSTAARLSDGALVLVDAVEGVHIQ--THAVLRQSWIEKLTPCLVLNKI 136 (876)
Q Consensus 72 -----~~~~inlIDTPGh~dF~~e--------~~~al~~aDgaIlVvDa~egv~~~--t~~~l~~~~~~~ip~ilviNKi 136 (876)
....+.+|||||..+-..- ...+.-..|+++.|||+....... ...+..|+ .---++++||+
T Consensus 80 ~~~~~~~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi---~~ad~ivlnk~ 156 (158)
T cd03112 80 LDAGKIAFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQI---AFADRILLNKT 156 (158)
T ss_pred HHhccCCCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHH---HHCCEEEEecc
Confidence 1356789999998754322 222344579999999986543211 12222333 23468899999
Q ss_pred cc
Q 047363 137 DR 138 (876)
Q Consensus 137 D~ 138 (876)
|+
T Consensus 157 dl 158 (158)
T cd03112 157 DL 158 (158)
T ss_pred cC
Confidence 96
No 349
>cd01684 Tet_like_IV EF-G_domain IV_RPP domain is a part of bacterial ribosomal protected proteins (RPP) family. RPPs such as tetracycline resistance proteins Tet(M) and Tet(O) mediate tetracycline resistance in both gram-positive and -negative species. Tetracyclines inhibit the accommodation of aminoacyl-tRNA into ribosomal A site and therefore prevent the addition of new amino acids to the growing polypeptide. RPPs Tet(M) confer tetracycline resistance by releasing tetracycline from the ribosome and thereby freeing the ribosome from inhibitory effects of the drug, such that aa-tRNA can bind to the A site and protein synthesis can continue.
Probab=97.59 E-value=0.0003 Score=66.62 Aligned_cols=38 Identities=5% Similarity=-0.040 Sum_probs=35.6
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCCcceeEEEEEEEeecc
Q 047363 803 QSLESSIVSGFQLATASGPLCDEPMWGLAFIVEAYISSN 841 (876)
Q Consensus 803 ~~~~~siv~GFq~at~~GPLceEp~~gv~f~i~d~~~~~ 841 (876)
.++..+|..||+.|+..||| .-||.+|++.|.+..+|+
T Consensus 54 ~~~~~aie~g~~~al~~G~l-G~pv~dv~V~l~~~~~h~ 91 (115)
T cd01684 54 RSFQNAVEETVRETLQQGLY-GWEVTDCKVTLTYGRYHS 91 (115)
T ss_pred HHHHHHHHHHHHHHHhcCCC-CCCEeeEEEEEEEeeecC
Confidence 47899999999999999999 999999999999998874
No 350
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.58 E-value=5.4e-05 Score=72.68 Aligned_cols=113 Identities=19% Similarity=0.148 Sum_probs=79.0
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccc
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDF 87 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF 87 (876)
+=-.|-++|-.|+||||+.-+|--. .+.... -|+.-+..++.+++.+++++|.-|.-..
T Consensus 17 ~e~rililgldGaGkttIlyrlqvg--evvttk-------------------Ptigfnve~v~yKNLk~~vwdLggqtSi 75 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVG--EVVTTK-------------------PTIGFNVETVPYKNLKFQVWDLGGQTSI 75 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccC--cccccC-------------------CCCCcCccccccccccceeeEccCcccc
Confidence 3456778888888888876655322 222111 1334445567778999999999999999
Q ss_pred hHHHHHHHHhcCeEEEEEcCCCccccchHH-----HHHHhhhhcCCcEEEEeccccccc
Q 047363 88 CSEVSTAARLSDGALVLVDAVEGVHIQTHA-----VLRQSWIEKLTPCLVLNKIDRLIS 141 (876)
Q Consensus 88 ~~e~~~al~~aDgaIlVvDa~egv~~~t~~-----~l~~~~~~~ip~ilviNKiD~~~~ 141 (876)
..-+..++...|.+|.|||..+-....... ++..-+..+-..++|.||+|-..+
T Consensus 76 rPyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~ 134 (182)
T KOG0072|consen 76 RPYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGA 134 (182)
T ss_pred cHHHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhh
Confidence 999999999999999999998755433322 222223334567788999999864
No 351
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.56 E-value=0.0008 Score=65.71 Aligned_cols=120 Identities=18% Similarity=0.222 Sum_probs=74.2
Q ss_pred EEEE-eCCCCcHHHHHHHHHHhhCCCCcccccCC-ceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccchH
Q 047363 12 ISIL-AHVDHGKTTLADHLIAATGGGLLHPKLAG-KLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFCS 89 (876)
Q Consensus 12 I~Iv-G~~~~GKTTL~~~Ll~~t~~g~i~~~~~g-~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~~ 89 (876)
|++. |..|+||||+.-.|....+. .| .+.+.|.... +-.+ +|.+.+||||+..+ .
T Consensus 2 i~~~~~kgg~gkt~~~~~~a~~~~~-------~~~~~~~vd~D~~----~~~~----------~yd~VIiD~p~~~~--~ 58 (139)
T cd02038 2 IAVTSGKGGVGKTNISANLALALAK-------LGKRVLLLDADLG----LANL----------DYDYIIIDTGAGIS--D 58 (139)
T ss_pred EEEEcCCCCCcHHHHHHHHHHHHHH-------CCCcEEEEECCCC----CCCC----------CCCEEEEECCCCCC--H
Confidence 3443 45899999999888766211 12 2334443321 1111 18899999998654 5
Q ss_pred HHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhh--cCCcEEEEecccccccccccChHHHHHHHHHHHH
Q 047363 90 EVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIE--KLTPCLVLNKIDRLISELKLTPLEAYNRLLRIVH 159 (876)
Q Consensus 90 e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~--~ip~ilviNKiD~~~~e~~~~~~~~~~~l~~~l~ 159 (876)
....++..+|.+++|+++.......+...++.+... ..++.+|+|+.+.... ..+.++++.+.+.
T Consensus 59 ~~~~~l~~aD~vviv~~~~~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~~~~-----~~~~~~~~~~~~~ 125 (139)
T cd02038 59 NVLDFFLAADEVIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAESPKE-----GKKVFKRLSNVSN 125 (139)
T ss_pred HHHHHHHhCCeEEEEcCCChhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCHHH-----HHHHHHHHHHHHH
Confidence 567899999999999998754444445555555332 3466789999975421 3345555555444
No 352
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=97.55 E-value=4e-05 Score=78.59 Aligned_cols=114 Identities=17% Similarity=0.100 Sum_probs=73.7
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEE-EcCeEEEEEcCCCCccc
Q 047363 9 IRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALH-YKDYAINLIDSPGHMDF 87 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~-~~~~~inlIDTPGh~dF 87 (876)
-+.++|||...+|||+|+..+...+..+...+ ++.|.+ +..+.+. .+...+.||||.|+.||
T Consensus 4 ~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvP------TVFdny-----------s~~v~V~dg~~v~L~LwDTAGqedY 66 (198)
T KOG0393|consen 4 RIKCVVVGDGAVGKTCLLISYTTNAFPEEYVP------TVFDNY-----------SANVTVDDGKPVELGLWDTAGQEDY 66 (198)
T ss_pred eeEEEEECCCCcCceEEEEEeccCcCcccccC------eEEccc-----------eEEEEecCCCEEEEeeeecCCCccc
Confidence 36789999999999999876653311111111 112221 1223332 34567899999999999
Q ss_pred hHHHHHHHHhcCeEEEEEcCCCccccch--HHHHHHhhh--hcCCcEEEEeccccc
Q 047363 88 CSEVSTAARLSDGALVLVDAVEGVHIQT--HAVLRQSWI--EKLTPCLVLNKIDRL 139 (876)
Q Consensus 88 ~~e~~~al~~aDgaIlVvDa~egv~~~t--~~~l~~~~~--~~ip~ilviNKiD~~ 139 (876)
..-..-+++.+|.++++++.....+... ..-+..... -++|+|||.+|.|+.
T Consensus 67 DrlRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr 122 (198)
T KOG0393|consen 67 DRLRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLR 122 (198)
T ss_pred ccccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhh
Confidence 7755568889999999888775544332 122222222 468999999999997
No 353
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=97.53 E-value=0.00011 Score=73.00 Aligned_cols=56 Identities=21% Similarity=0.173 Sum_probs=36.6
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCC
Q 047363 9 IRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGH 84 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh 84 (876)
-.+|+++|.+|+|||||+|+|+.. ....... ..|.|.....+.+ +..+.|+||||.
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~~--~~~~~~~---------------~~g~T~~~~~~~~---~~~~~liDtPGi 157 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRSK--KVCKVAP---------------IPGETKVWQYITL---MKRIYLIDCPGV 157 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhcC--CceeeCC---------------CCCeeEeEEEEEc---CCCEEEEECcCC
Confidence 357899999999999999999876 3222111 1244443322222 345899999993
No 354
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.52 E-value=0.00065 Score=75.65 Aligned_cols=143 Identities=20% Similarity=0.208 Sum_probs=82.5
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhhCCCCcc--cccCCceeeccChhhhh--hcceeeeeeEEEEEEc-----------
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAATGGGLLH--PKLAGKLRFMDYLDEEQ--RRAITMKSSSIALHYK----------- 72 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~--~~~~g~~~~~d~~~~E~--~rgiti~~~~i~~~~~----------- 72 (876)
+|+...|.|..|+|||||+++|+...+...+. ....|.+.+ |....+. ..-+++...++.+...
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~~~~~riaVi~NEfG~v~i-D~~ll~~~~~~v~eL~~GCiCCs~~~~l~~~l~~l~ 81 (318)
T PRK11537 3 PIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSV-DDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLL 81 (318)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhcccCCcccccccCcCCccc-cHHHHhCcCceEEEECCCEEEEccCchHHHHHHHHH
Confidence 67888999999999999999999763221111 112343322 2211111 1123444555655533
Q ss_pred --------CeEEEEEcCCCCccchHHHHHHH---------HhcCeEEEEEcCCCccccch-HHHHHHhhhhcCCcEEEEe
Q 047363 73 --------DYAINLIDSPGHMDFCSEVSTAA---------RLSDGALVLVDAVEGVHIQT-HAVLRQSWIEKLTPCLVLN 134 (876)
Q Consensus 73 --------~~~inlIDTPGh~dF~~e~~~al---------~~aDgaIlVvDa~egv~~~t-~~~l~~~~~~~ip~ilviN 134 (876)
.....+|.|.|..+-..-+ .++ -..|++|.|||+........ ..+. ..+...-=++++|
T Consensus 82 ~~~~~~~~~~d~IvIEttG~a~p~~i~-~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~--~~Qi~~AD~Ivln 158 (318)
T PRK11537 82 DNLDKGNIQFDRLVIECTGMADPGPII-QTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIA--QSQVGYADRILLT 158 (318)
T ss_pred HHHhccCCCCCEEEEECCCccCHHHHH-HHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHH--HHHHHhCCEEEEe
Confidence 1457899999988753322 222 12489999999986543211 1111 1233346689999
Q ss_pred cccccccccccChHHHHHHHHHHHHHhhh
Q 047363 135 KIDRLISELKLTPLEAYNRLLRIVHEVNG 163 (876)
Q Consensus 135 KiD~~~~e~~~~~~~~~~~l~~~l~~vn~ 163 (876)
|+|+.... .++...+..+|.
T Consensus 159 K~Dl~~~~---------~~~~~~l~~lnp 178 (318)
T PRK11537 159 KTDVAGEA---------EKLRERLARINA 178 (318)
T ss_pred ccccCCHH---------HHHHHHHHHhCC
Confidence 99998531 355556666663
No 355
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.47 E-value=0.00071 Score=62.98 Aligned_cols=100 Identities=18% Similarity=0.138 Sum_probs=65.8
Q ss_pred EEEEeC-CCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccchHH
Q 047363 12 ISILAH-VDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFCSE 90 (876)
Q Consensus 12 I~IvG~-~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~~e 90 (876)
|+++|. .|+||||+.-.|...-.. ....++...|..+.- +..+.++|||+..+ ..
T Consensus 2 i~~~~~kgg~gkt~~~~~la~~~~~-----~~~~~~~l~d~d~~~-----------------~~D~IIiDtpp~~~--~~ 57 (106)
T cd03111 2 IAFIGAKGGVGATTLAANLAVALAK-----EAGRRVLLVDLDLQF-----------------GDDYVVVDLGRSLD--EV 57 (106)
T ss_pred EEEECCCCCCcHHHHHHHHHHHHHh-----cCCCcEEEEECCCCC-----------------CCCEEEEeCCCCcC--HH
Confidence 566665 899999998888665111 000123334433321 12789999999765 45
Q ss_pred HHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcC----CcEEEEec
Q 047363 91 VSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKL----TPCLVLNK 135 (876)
Q Consensus 91 ~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~i----p~ilviNK 135 (876)
...++..||.+|+|++........+..+++.+.+.+. ++.+|+|+
T Consensus 58 ~~~~l~~aD~vlvvv~~~~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 58 SLAALDQADRVFLVTQQDLPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred HHHHHHHcCeEEEEecCChHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 5678999999999999876666666666666655444 45578885
No 356
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.46 E-value=7.3e-05 Score=74.72 Aligned_cols=64 Identities=20% Similarity=0.311 Sum_probs=34.8
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhhC--CCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccc
Q 047363 10 RNISILAHVDHGKTTLADHLIAATG--GGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDF 87 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~t~--~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF 87 (876)
+.++++|++|+|||||+|+|+.... .+.++.. ..||-....+..-+.+ .....+|||||..+|
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~--------------~~rGkHTTt~~~l~~l-~~g~~iIDTPGf~~~ 100 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEK--------------TGRGKHTTTHRELFPL-PDGGYIIDTPGFRSF 100 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S----------------------------SEEEEEE-TTSEEEECSHHHHT-
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcc--------------cCCCcccCCCeeEEec-CCCcEEEECCCCCcc
Confidence 7899999999999999999987610 1111111 1233222222222222 345789999997776
Q ss_pred h
Q 047363 88 C 88 (876)
Q Consensus 88 ~ 88 (876)
.
T Consensus 101 ~ 101 (161)
T PF03193_consen 101 G 101 (161)
T ss_dssp -
T ss_pred c
Confidence 3
No 357
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.40 E-value=0.00075 Score=69.98 Aligned_cols=123 Identities=22% Similarity=0.197 Sum_probs=65.5
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCce--eeccChh---hhhhc------ceeeeeeE-----EE-----
Q 047363 10 RNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKL--RFMDYLD---EEQRR------AITMKSSS-----IA----- 68 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~--~~~d~~~---~E~~r------giti~~~~-----i~----- 68 (876)
+.|+++|+.|+||||.+-.|... .... ..++ --.|... .||-+ |+.+.... ..
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~--~~~~----~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~ 75 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAAR--LKLK----GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREA 75 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH--HHHT----T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHH--Hhhc----cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHH
Confidence 56899999999999999998776 2110 0111 1122221 12211 22211000 00
Q ss_pred ---EEEcCeEEEEEcCCCCccchHH----HHHHHH--hcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEeccccc
Q 047363 69 ---LHYKDYAINLIDSPGHMDFCSE----VSTAAR--LSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRL 139 (876)
Q Consensus 69 ---~~~~~~~inlIDTPGh~dF~~e----~~~al~--~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~ 139 (876)
+..+++.+.||||||......+ +..-++ .-+-+++|+|+..+... ...+.......+ +-=++++|+|-.
T Consensus 76 l~~~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~-~~~~~~~~~~~~-~~~lIlTKlDet 153 (196)
T PF00448_consen 76 LEKFRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQED-LEQALAFYEAFG-IDGLILTKLDET 153 (196)
T ss_dssp HHHHHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHH-HHHHHHHHHHSS-TCEEEEESTTSS
T ss_pred HHHHhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHH-HHHHHHHhhccc-CceEEEEeecCC
Confidence 0012478999999997765433 222222 34678999999866432 223333333233 345779999986
Q ss_pred c
Q 047363 140 I 140 (876)
Q Consensus 140 ~ 140 (876)
.
T Consensus 154 ~ 154 (196)
T PF00448_consen 154 A 154 (196)
T ss_dssp S
T ss_pred C
Confidence 3
No 358
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=97.38 E-value=0.00053 Score=72.63 Aligned_cols=91 Identities=21% Similarity=0.155 Sum_probs=57.8
Q ss_pred CCCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCc
Q 047363 6 TRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHM 85 (876)
Q Consensus 6 ~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~ 85 (876)
..++..|+|+|+.++|||||+|+|++. .. ...+.+.. ....+||-+....+.. ..+..+.++||||..
T Consensus 4 ~~~v~vvsv~G~~~sGKS~llN~l~~~--~~--------~f~~~~~~-~~~T~gi~~~~~~~~~-~~~~~v~~lDteG~~ 71 (224)
T cd01851 4 GFPVAVVSVFGPQSSGKSFLLNHLFGT--LS--------GFDVMDTS-QQTTKGIWMWSVPFKL-GKEHAVLLLDTEGTD 71 (224)
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHhCC--CC--------CeEecCCC-CCCccceEEEeccccC-CCcceEEEEecCCcC
Confidence 356888999999999999999999866 21 11111111 2223566544332221 235789999999976
Q ss_pred cc------hHHHHHHHHh--cCeEEEEEcCC
Q 047363 86 DF------CSEVSTAARL--SDGALVLVDAV 108 (876)
Q Consensus 86 dF------~~e~~~al~~--aDgaIlVvDa~ 108 (876)
+- ......++.. +|.+|+.++..
T Consensus 72 ~~~~~~~~~~~~~~~l~~llss~~i~n~~~~ 102 (224)
T cd01851 72 GRERGEFEDDARLFALATLLSSVLIYNSWET 102 (224)
T ss_pred ccccCchhhhhHHHHHHHHHhCEEEEeccCc
Confidence 53 2234455555 88888887764
No 359
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.38 E-value=0.00084 Score=75.56 Aligned_cols=134 Identities=20% Similarity=0.146 Sum_probs=73.6
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcc--cccCCceeeccChhhhh--------hcceeeeeeEEEEEEc----
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLH--PKLAGKLRFMDYLDEEQ--------RRAITMKSSSIALHYK---- 72 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~--~~~~g~~~~~d~~~~E~--------~rgiti~~~~i~~~~~---- 72 (876)
.+++...|.|..|+|||||+++|+...+...+. ....|.+- .|..-... +.-+.+...++.+...
T Consensus 2 ~~ipv~iltGFLGaGKTTll~~ll~~~~~~~iavi~Ne~G~~~-ID~~ll~~~~~~~~~~~~v~el~nGCiCCs~~~dl~ 80 (341)
T TIGR02475 2 AKIPVTIVTGFLGAGKTTLIRHLLQNAAGRRIAVIVNEFGDLG-IDGEILKACGIEGCSEENIVELANGCICCTVADDFI 80 (341)
T ss_pred CccCEEEEEECCCCCHHHHHHHHHhccCCCcEEEEECCCcccc-chHHHHhccccccCCcceEEEeCCCCccccCcHHHH
Confidence 357778999999999999999999763221111 11123221 11111110 1123333333433321
Q ss_pred -----------CeEEEEEcCCCCccchHHHHHH-------HHhcCeEEEEEcCCCccccc--------------------
Q 047363 73 -----------DYAINLIDSPGHMDFCSEVSTA-------ARLSDGALVLVDAVEGVHIQ-------------------- 114 (876)
Q Consensus 73 -----------~~~inlIDTPGh~dF~~e~~~a-------l~~aDgaIlVvDa~egv~~~-------------------- 114 (876)
.....+|.|.|..+...-+..- .-..|++|.|||+.......
T Consensus 81 ~~l~~l~~~~~~~d~IvIEtsG~a~P~~i~~~~~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (341)
T TIGR02475 81 PTMTKLLARRQRPDHILIETSGLALPKPLVQAFQWPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADDNLDH 160 (341)
T ss_pred HHHHHHHhccCCCCEEEEeCCCCCCHHHHHHHhcCccccceEEeeeEEEEEECchhhhhccccchhhhhhhccccccccc
Confidence 3568899999998864333221 12458999999997543210
Q ss_pred hHHHHHH-hhhhcCCcEEEEeccccccc
Q 047363 115 THAVLRQ-SWIEKLTPCLVLNKIDRLIS 141 (876)
Q Consensus 115 t~~~l~~-~~~~~ip~ilviNKiD~~~~ 141 (876)
...+-.. ..+....=++++||+|+...
T Consensus 161 ~~~~~~~~~~Qi~~AD~IvlnK~Dl~~~ 188 (341)
T TIGR02475 161 ETPLEELFEDQLACADLVILNKADLLDA 188 (341)
T ss_pred cchHHHHHHHHHHhCCEEEEeccccCCH
Confidence 0000001 12233457899999999864
No 360
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.35 E-value=0.00093 Score=78.14 Aligned_cols=125 Identities=22% Similarity=0.237 Sum_probs=65.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeec--cChh---hhhh------cceeeeeeEEEE-------
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFM--DYLD---EEQR------RAITMKSSSIAL------- 69 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~--d~~~---~E~~------rgiti~~~~i~~------- 69 (876)
.-++|+|+|+.|+||||++..|...... .....++.+. |... .|+- .|+.+....-.-
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~----~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~ 424 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAA----QHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLE 424 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHH----hcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHH
Confidence 3478999999999999999998764100 0000122222 2211 1111 122221100000
Q ss_pred EEcCeEEEEEcCCCCccchHHHH------HHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEeccccc
Q 047363 70 HYKDYAINLIDSPGHMDFCSEVS------TAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRL 139 (876)
Q Consensus 70 ~~~~~~inlIDTPGh~dF~~e~~------~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~ 139 (876)
.+.++.+.||||||......... .+.. ....++|+++..+... ...+++..... .+.-+|+||+|..
T Consensus 425 ~l~~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~-~~a~lLVLpAtss~~D-l~eii~~f~~~-~~~gvILTKlDEt 497 (559)
T PRK12727 425 RLRDYKLVLIDTAGMGQRDRALAAQLNWLRAAR-QVTSLLVLPANAHFSD-LDEVVRRFAHA-KPQGVVLTKLDET 497 (559)
T ss_pred HhccCCEEEecCCCcchhhHHHHHHHHHHHHhh-cCCcEEEEECCCChhH-HHHHHHHHHhh-CCeEEEEecCcCc
Confidence 12368899999999765432211 1112 2356888888754322 22334433332 3567899999985
No 361
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.34 E-value=0.00026 Score=70.33 Aligned_cols=57 Identities=23% Similarity=0.353 Sum_probs=38.4
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCC
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGH 84 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh 84 (876)
+..+++++|++|+|||||+++|+.. ..... ....|.|.....+.+ +..++++||||.
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~--~~~~~---------------~~~~~~t~~~~~~~~---~~~~~liDtPG~ 155 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNK--LKLKV---------------GNVPGTTTSQQEVKL---DNKIKLLDTPGI 155 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHcc--ccccc---------------cCCCCcccceEEEEe---cCCEEEEECCCC
Confidence 4578999999999999999999876 32111 011244444333332 357999999994
No 362
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.34 E-value=0.0011 Score=66.75 Aligned_cols=64 Identities=19% Similarity=0.153 Sum_probs=49.2
Q ss_pred EEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCC-cEEEEecccccc
Q 047363 75 AINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLT-PCLVLNKIDRLI 140 (876)
Q Consensus 75 ~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip-~ilviNKiD~~~ 140 (876)
.+.+|||||..+ .....++..+|.+|+|+++.......+..+++.+...+.+ ..+|+|+.|...
T Consensus 64 d~viiD~p~~~~--~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~iv~N~~~~~~ 128 (179)
T cd02036 64 DYILIDSPAGIE--RGFITAIAPADEALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRVRPDM 128 (179)
T ss_pred CEEEEECCCCCc--HHHHHHHHhCCcEEEEeCCCcchHHHHHHHHHHHHHcCCceEEEEEeCCcccc
Confidence 799999998755 4577889999999999999866655666666666665555 457899998753
No 363
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=97.32 E-value=0.00054 Score=71.22 Aligned_cols=59 Identities=27% Similarity=0.339 Sum_probs=37.3
Q ss_pred CeEEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCc--EEEEecccccc
Q 047363 73 DYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTP--CLVLNKIDRLI 140 (876)
Q Consensus 73 ~~~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~--ilviNKiD~~~ 140 (876)
.....+|+|.|.. ...... -..+|++|+|+|+.++...+.. ...++.. ++++||+|+..
T Consensus 91 ~~D~iiIEt~G~~-l~~~~~--~~l~~~~i~vvD~~~~~~~~~~------~~~qi~~ad~~~~~k~d~~~ 151 (199)
T TIGR00101 91 PLEMVFIESGGDN-LSATFS--PELADLTIFVIDVAAGDKIPRK------GGPGITRSDLLVINKIDLAP 151 (199)
T ss_pred CCCEEEEECCCCC-cccccc--hhhhCcEEEEEEcchhhhhhhh------hHhHhhhccEEEEEhhhccc
Confidence 3578899999932 111111 2236899999999987653211 1123444 89999999984
No 364
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.32 E-value=0.00029 Score=71.52 Aligned_cols=56 Identities=21% Similarity=0.339 Sum_probs=37.9
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCC
Q 047363 9 IRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGH 84 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh 84 (876)
...|+++|.+|+|||||+++|++. ..... ....|+|.....+.+ +..+.++||||.
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~--~~~~~---------------~~~pg~T~~~~~~~~---~~~~~l~DtPGi 172 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRS--RACNV---------------GATPGVTKSMQEVHL---DKKVKLLDSPGI 172 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCc--cccee---------------cCCCCeEcceEEEEe---CCCEEEEECcCC
Confidence 357999999999999999999876 22111 112356654333332 346899999993
No 365
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=97.31 E-value=0.00092 Score=71.69 Aligned_cols=154 Identities=17% Similarity=0.227 Sum_probs=87.5
Q ss_pred CCCCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccc--cCCc-eeeccChhhhhhcc------eeeeeeEEEEEEc---
Q 047363 5 DTRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPK--LAGK-LRFMDYLDEEQRRA------ITMKSSSIALHYK--- 72 (876)
Q Consensus 5 ~~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~--~~g~-~~~~d~~~~E~~rg------iti~~~~i~~~~~--- 72 (876)
...+|+.-.|.|..|+|||||++.++..-|...|..- ..|. ..+-.+...+++.| +.....+..+..+
T Consensus 53 ~~~rIPvtIITGyLGaGKtTLLn~Il~~~hgKRIAVIlNEfGes~die~sl~~~~~gg~lyEewv~L~NGClCCtVk~~g 132 (391)
T KOG2743|consen 53 LGARIPVTIITGYLGAGKTTLLNYILTGQHGKRIAVILNEFGESSDIEKSLAVSQEGGELYEEWVELRNGCLCCTVKDNG 132 (391)
T ss_pred CCCccceEEEEecccCChHHHHHHHHccCCCceEEEEhhhcccchhhhHHHHhccccchHHHHHHHhcCCeEEEEecchH
Confidence 3457888889999999999999999977554333211 1121 00001111111111 2223344445443
Q ss_pred ------------CeEEEEEcCCCCccchH--------HHHHHHHhcCeEEEEEcCCCccccch----HHHHHHh-hhhcC
Q 047363 73 ------------DYAINLIDSPGHMDFCS--------EVSTAARLSDGALVLVDAVEGVHIQT----HAVLRQS-WIEKL 127 (876)
Q Consensus 73 ------------~~~inlIDTPGh~dF~~--------e~~~al~~aDgaIlVvDa~egv~~~t----~~~l~~~-~~~~i 127 (876)
.+...++.|.|..+--. +-..+---.||+|-||||.....-.. ...|..| .+...
T Consensus 133 vraie~lvqkkGkfD~IllETTGlAnPaPia~~Fw~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k~~g~i~EA~~QiA~ 212 (391)
T KOG2743|consen 133 VRAIENLVQKKGKFDHILLETTGLANPAPIASMFWLDDELGSDVKLDGIVTVVDAKHILKHLDEEKPDGLINEATRQIAL 212 (391)
T ss_pred HHHHHHHHhcCCCcceEEEeccCCCCcHHHHHHHhhhhhhcCceeeeeEEEEEehhhHHhhhcccCcccchHHHHHHHhh
Confidence 36788999999887422 11111223599999999975432111 1123222 22233
Q ss_pred CcEEEEecccccccccccChHHHHHHHHHHHHHhhhhh
Q 047363 128 TPCLVLNKIDRLISELKLTPLEAYNRLLRIVHEVNGIM 165 (876)
Q Consensus 128 p~ilviNKiD~~~~e~~~~~~~~~~~l~~~l~~vn~~~ 165 (876)
.--+++||.|+... +...++++.+..+|.+.
T Consensus 213 AD~II~NKtDli~~-------e~~~~l~q~I~~INslA 243 (391)
T KOG2743|consen 213 ADRIIMNKTDLVSE-------EEVKKLRQRIRSINSLA 243 (391)
T ss_pred hheeeeccccccCH-------HHHHHHHHHHHHhhhHH
Confidence 44688999999853 55667777777788654
No 366
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=97.29 E-value=0.0027 Score=68.69 Aligned_cols=128 Identities=25% Similarity=0.295 Sum_probs=71.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHh-hCCCC----c--cc--ccCCceeeccChhhhh---hcceeeeeeEEEEEE----
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAA-TGGGL----L--HP--KLAGKLRFMDYLDEEQ---RRAITMKSSSIALHY---- 71 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~-t~~g~----i--~~--~~~g~~~~~d~~~~E~---~rgiti~~~~i~~~~---- 71 (876)
+--.|+|.|.+|+|||||++.|... .+.|. + ++ ...|..-.-|...... ..|+-|.+.+..=..
T Consensus 50 ~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGlS 129 (323)
T COG1703 50 NAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGLS 129 (323)
T ss_pred CCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhhh
Confidence 3457999999999999999999875 11222 1 11 1111111112111111 112222221111000
Q ss_pred ------------cCeEEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEeccccc
Q 047363 72 ------------KDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRL 139 (876)
Q Consensus 72 ------------~~~~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~ 139 (876)
-+|.+.||.|-|--. +|+ .-...+|..++|.=+.-|...|..+. --.-+-=|+||||.|+.
T Consensus 130 ~at~~~i~~ldAaG~DvIIVETVGvGQ--sev-~I~~~aDt~~~v~~pg~GD~~Q~iK~----GimEiaDi~vINKaD~~ 202 (323)
T COG1703 130 RATREAIKLLDAAGYDVIIVETVGVGQ--SEV-DIANMADTFLVVMIPGAGDDLQGIKA----GIMEIADIIVINKADRK 202 (323)
T ss_pred HHHHHHHHHHHhcCCCEEEEEecCCCc--chh-HHhhhcceEEEEecCCCCcHHHHHHh----hhhhhhheeeEeccChh
Confidence 168999999999543 222 22456799888887777777766542 11123568999999987
Q ss_pred ccc
Q 047363 140 ISE 142 (876)
Q Consensus 140 ~~e 142 (876)
.++
T Consensus 203 ~A~ 205 (323)
T COG1703 203 GAE 205 (323)
T ss_pred hHH
Confidence 764
No 367
>PRK14974 cell division protein FtsY; Provisional
Probab=97.29 E-value=0.0016 Score=73.00 Aligned_cols=120 Identities=23% Similarity=0.188 Sum_probs=65.7
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhhC-CCCcccccCCceee--ccCh---hhhhh------cceeeeeeEE-----EE-
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAATG-GGLLHPKLAGKLRF--MDYL---DEEQR------RAITMKSSSI-----AL- 69 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t~-~g~i~~~~~g~~~~--~d~~---~~E~~------rgiti~~~~i-----~~- 69 (876)
+.+.|+++|.+|+||||++..|..... .| .++.+ .|.. ..++- -|+.+..... .+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g-------~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~ 211 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNG-------FSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVA 211 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcC-------CeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHH
Confidence 357899999999999998888865410 11 01111 1211 11111 1222111000 00
Q ss_pred -------EEcCeEEEEEcCCCCccch----HHHHHHHH--hcCeEEEEEcCCCccccchHHHHHHhhhh---cCCcEEEE
Q 047363 70 -------HYKDYAINLIDSPGHMDFC----SEVSTAAR--LSDGALVLVDAVEGVHIQTHAVLRQSWIE---KLTPCLVL 133 (876)
Q Consensus 70 -------~~~~~~inlIDTPGh~dF~----~e~~~al~--~aDgaIlVvDa~egv~~~t~~~l~~~~~~---~ip~ilvi 133 (876)
...++.+.||||||..... .+...-.+ ..|..++|+|+..|- ..++++... --.--+++
T Consensus 212 ~~ai~~~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~-----d~~~~a~~f~~~~~~~giIl 286 (336)
T PRK14974 212 YDAIEHAKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGN-----DAVEQAREFNEAVGIDGVIL 286 (336)
T ss_pred HHHHHHHHhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccch-----hHHHHHHHHHhcCCCCEEEE
Confidence 1125779999999987543 33332222 358899999997653 223333322 12456899
Q ss_pred eccccc
Q 047363 134 NKIDRL 139 (876)
Q Consensus 134 NKiD~~ 139 (876)
||+|..
T Consensus 287 TKlD~~ 292 (336)
T PRK14974 287 TKVDAD 292 (336)
T ss_pred eeecCC
Confidence 999986
No 368
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.27 E-value=0.0011 Score=76.59 Aligned_cols=120 Identities=21% Similarity=0.267 Sum_probs=68.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhhC-CCCcccccCCceee--ccCh-h--hhh------hcceeeeeeEEEE------
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAATG-GGLLHPKLAGKLRF--MDYL-D--EEQ------RRAITMKSSSIAL------ 69 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t~-~g~i~~~~~g~~~~--~d~~-~--~E~------~rgiti~~~~i~~------ 69 (876)
+.++|.++|+.|+||||++..|..... .|. ++.+ .|.. + .++ ..|+.+......-
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~-------kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~ 166 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGL-------KVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIA 166 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCC-------eEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHH
Confidence 467899999999999999998876511 110 1111 1211 1 111 1122221110000
Q ss_pred -----EEcCeEEEEEcCCCCccchHHH------HHHHHhcCeEEEEEcCCCccccchHHHHHHhhhh--cCCc-EEEEec
Q 047363 70 -----HYKDYAINLIDSPGHMDFCSEV------STAARLSDGALVLVDAVEGVHIQTHAVLRQSWIE--KLTP-CLVLNK 135 (876)
Q Consensus 70 -----~~~~~~inlIDTPGh~dF~~e~------~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~--~ip~-ilviNK 135 (876)
...++.+.||||||...+..+. ..++..+|.+++|+|+..|. ..++++... .+++ -+|+||
T Consensus 167 ~~al~~~~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq-----~av~~a~~F~~~l~i~gvIlTK 241 (437)
T PRK00771 167 KEGLEKFKKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ-----QAKNQAKAFHEAVGIGGIIITK 241 (437)
T ss_pred HHHHHHhhcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH-----HHHHHHHHHHhcCCCCEEEEec
Confidence 0124689999999977764432 23455679999999997762 233444333 2444 578999
Q ss_pred cccc
Q 047363 136 IDRL 139 (876)
Q Consensus 136 iD~~ 139 (876)
+|-.
T Consensus 242 lD~~ 245 (437)
T PRK00771 242 LDGT 245 (437)
T ss_pred ccCC
Confidence 9975
No 369
>cd03698 eRF3_II_like eRF3_II_like: domain similar to domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM
Probab=97.26 E-value=0.0022 Score=56.98 Aligned_cols=64 Identities=23% Similarity=0.406 Sum_probs=47.2
Q ss_pred eEEEEEEEeCccCCCCEEEEeccccCCcchhhhccccceeEEeEEEEecCCceeecceeeCCCeEEE--ecCCc-eeecc
Q 047363 439 FLAFARIFSGVLYSGQRVFVLSALYDPLKVESMQKHIQEAELQSLYLMMGQGLKPVASAKAGNVVAI--RGLGQ-QILKS 515 (876)
Q Consensus 439 ~iaf~RV~SGtL~~G~~v~vlg~~y~~~~~~~~~~~~~~~~I~~L~l~~G~~~~~v~~v~AGnIv~I--~GL~~-~i~k~ 515 (876)
.+..+||.+|++++||+|+++... ...+|..|... ..++++|.||+.+++ .|++. .+.+|
T Consensus 16 ~vv~G~v~~G~i~~Gd~v~i~P~~-------------~~~~V~si~~~----~~~~~~a~aGd~v~~~l~~~~~~~v~~G 78 (83)
T cd03698 16 TVVSGKVESGSIQKGDTLLVMPSK-------------ESVEVKSIYVD----DEEVDYAVAGENVRLKLKGIDEEDISPG 78 (83)
T ss_pred cEEEEEEeeeEEeCCCEEEEeCCC-------------cEEEEEEEEEC----CeECCEECCCCEEEEEECCCCHHHCCCC
Confidence 588999999999999999986421 23678887654 378999999999995 44431 25556
Q ss_pred ceec
Q 047363 516 ATLS 519 (876)
Q Consensus 516 ~Tl~ 519 (876)
+.|+
T Consensus 79 ~vl~ 82 (83)
T cd03698 79 DVLC 82 (83)
T ss_pred CEEe
Confidence 6554
No 370
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.25 E-value=0.00032 Score=68.51 Aligned_cols=22 Identities=23% Similarity=0.468 Sum_probs=20.5
Q ss_pred EEEEEeCCCCcHHHHHHHHHHh
Q 047363 11 NISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
.++++|.+|+|||||+++|+..
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~ 106 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGK 106 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999865
No 371
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.25 E-value=0.00032 Score=72.04 Aligned_cols=63 Identities=22% Similarity=0.297 Sum_probs=39.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCC
Q 047363 10 RNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGH 84 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh 84 (876)
.+++++|.+|+|||||+|+|+.. ...... ..+.. ......|.|.....+.+. ..+.||||||.
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~--~~~~~~-~~~~~------~~~~~~gtT~~~~~~~~~---~~~~~~DtPG~ 190 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKK--DNGKKK-LKDLL------TTSPIPGTTLDLIKIPLG---NGKKLYDTPGI 190 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHh--cccccc-ccccc------ccCCCCCeeeeeEEEecC---CCCEEEeCcCC
Confidence 57999999999999999999986 210000 00000 111223667665544442 36899999994
No 372
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=97.21 E-value=0.00061 Score=74.37 Aligned_cols=125 Identities=18% Similarity=0.214 Sum_probs=63.0
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhc--ce---eeeeeEEEEE-----------
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRR--AI---TMKSSSIALH----------- 70 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~r--gi---ti~~~~i~~~----------- 70 (876)
..+..|.|+|.+|+|||||+++|+.......-..-..|... ++ ...+.-+ |+ .+....+...
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~gD~~-t~-~Da~rI~~~g~pvvqi~tG~~Chl~a~mv~~Al~~ 179 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQQ-TV-NDAARIRATGTPAIQVNTGKGCHLDAQMIADAAPR 179 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEECCCcC-cH-HHHHHHHhcCCcEEEecCCCCCcCcHHHHHHHHHH
Confidence 45788999999999999999999886211100000011111 11 1111111 21 1211111110
Q ss_pred --EcCeEEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccc
Q 047363 71 --YKDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 71 --~~~~~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~ 140 (876)
..+..+.||++-|..-.-.+. -+. .+.-+.|+++.+|... .+++-.....+-++++||+|+..
T Consensus 180 L~~~~~d~liIEnvGnLvcPa~f--dlg-e~~~v~vlsV~eg~dk----plKyp~~f~~ADIVVLNKiDLl~ 244 (290)
T PRK10463 180 LPLDDNGILFIENVGNLVCPASF--DLG-EKHKVAVLSVTEGEDK----PLKYPHMFAAASLMLLNKVDLLP 244 (290)
T ss_pred HhhcCCcEEEEECCCCccCCCcc--chh-hceeEEEEECcccccc----chhccchhhcCcEEEEEhHHcCc
Confidence 113567788888841110000 011 1234677888877421 11222334678899999999974
No 373
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=97.20 E-value=0.00041 Score=67.49 Aligned_cols=115 Identities=20% Similarity=0.260 Sum_probs=85.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccchH
Q 047363 10 RNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFCS 89 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~~ 89 (876)
-.|+++|....|||||+-..++. . .| ..-++.-|+...-..+++...+..+.+||.-|..+|..
T Consensus 21 lkv~llGD~qiGKTs~mvkYV~~--~-------------~d-e~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n 84 (205)
T KOG1673|consen 21 LKVGLLGDAQIGKTSLMVKYVQN--E-------------YD-EEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFIN 84 (205)
T ss_pred EEEEeecccccCceeeehhhhcc--h-------------hH-HHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhc
Confidence 56899999999999998766544 1 01 22344556665555556655567789999999999999
Q ss_pred HHHHHHHhcCeEEEEEcCCCccccchHH-HHHHhhhhcC--CcEEEEecccccc
Q 047363 90 EVSTAARLSDGALVLVDAVEGVHIQTHA-VLRQSWIEKL--TPCLVLNKIDRLI 140 (876)
Q Consensus 90 e~~~al~~aDgaIlVvDa~egv~~~t~~-~l~~~~~~~i--p~ilviNKiD~~~ 140 (876)
...-|...+-++++++|-....+..... -.+|++..+. -+|+|.+|-|...
T Consensus 85 ~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiPilvGTKyD~fi 138 (205)
T KOG1673|consen 85 MLPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNKTAIPILVGTKYDLFI 138 (205)
T ss_pred cCceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccCCccceEEeccchHhhh
Confidence 9999999999999999988665554444 4467776654 3468999999975
No 374
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.19 E-value=0.00044 Score=78.43 Aligned_cols=115 Identities=12% Similarity=0.118 Sum_probs=62.5
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccchH
Q 047363 10 RNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFCS 89 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~~ 89 (876)
+++.++|.+|+|||||+|+|+.. ..... ...+. ....|.|.....+. . +..+.++||||.....
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~--~~~~~----~~~~~------s~~pgtT~~~~~~~--~-~~~~~l~DtPG~~~~~- 218 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQ--NNGDK----DVITT------SPFPGTTLDLIEIP--L-DDGHSLYDTPGIINSH- 218 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhh--ccCCc----ceeee------cCCCCeEeeEEEEE--e-CCCCEEEECCCCCChh-
Confidence 68999999999999999999986 32110 00111 11245665543333 2 2346899999976542
Q ss_pred HHHHHH-----------HhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccc
Q 047363 90 EVSTAA-----------RLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 90 e~~~al-----------~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~ 140 (876)
.+...+ .......+.+|............+......+..+.++++|-+...
T Consensus 219 ~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~q~~~~ggl~~~d~~~~~~~~~~~~~~~~~~~h 280 (360)
T TIGR03597 219 QMAHYLDKKDLKYITPKKEIKPKTYQLNPNQTLFLGGLARFDYLKGEKTSFTFYVSNELNIH 280 (360)
T ss_pred HhhhhcCHHHHhhcCCCCccCceEEEeCCCCEEEEceEEEEEEecCCceEEEEEccCCceeE
Confidence 112111 123456666666543322211111122223455677777776653
No 375
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.17 E-value=0.0018 Score=73.26 Aligned_cols=124 Identities=15% Similarity=0.111 Sum_probs=66.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhhC-CCCcccccCCceee--ccCh---hhhhhc------ceeeeeeEE--E-----
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAATG-GGLLHPKLAGKLRF--MDYL---DEEQRR------AITMKSSSI--A----- 68 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t~-~g~i~~~~~g~~~~--~d~~---~~E~~r------giti~~~~i--~----- 68 (876)
+.+.|+++|+.|+||||++..|..... .| .++.+ .|.. ..++-+ |+.+....- .
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~G-------kkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL 312 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKK-------KTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRAL 312 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcC-------CcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHH
Confidence 348899999999999999999976521 11 01111 2221 112211 222110000 0
Q ss_pred --EE-EcCeEEEEEcCCCCccc----hHHHHHHHHh--cCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEeccccc
Q 047363 69 --LH-YKDYAINLIDSPGHMDF----CSEVSTAARL--SDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRL 139 (876)
Q Consensus 69 --~~-~~~~~inlIDTPGh~dF----~~e~~~al~~--aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~ 139 (876)
+. ..++.+.||||||.... ..+....++. -|-+++|+|+.-+-. ....+++.....+ .-=++++|+|-.
T Consensus 313 ~~lk~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~-d~~~i~~~F~~~~-idglI~TKLDET 390 (436)
T PRK11889 313 TYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSK-DMIEIITNFKDIH-IDGIVFTKFDET 390 (436)
T ss_pred HHHHhccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChH-HHHHHHHHhcCCC-CCEEEEEcccCC
Confidence 00 01368999999997654 3334444432 367889999863321 1123333333221 235889999986
Q ss_pred c
Q 047363 140 I 140 (876)
Q Consensus 140 ~ 140 (876)
.
T Consensus 391 ~ 391 (436)
T PRK11889 391 A 391 (436)
T ss_pred C
Confidence 3
No 376
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.16 E-value=0.002 Score=59.17 Aligned_cols=82 Identities=23% Similarity=0.199 Sum_probs=54.6
Q ss_pred EEEEeC-CCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccchHH
Q 047363 12 ISILAH-VDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFCSE 90 (876)
Q Consensus 12 I~IvG~-~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~~e 90 (876)
|++.|. .|+||||++-.|..... . ...++...|..+. +.+.+||||+..+ ..
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~--~----~~~~vl~~d~d~~-------------------~d~viiD~p~~~~--~~ 54 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALA--R----RGKRVLLIDLDPQ-------------------YDYIIIDTPPSLG--LL 54 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHH--h----CCCcEEEEeCCCC-------------------CCEEEEeCcCCCC--HH
Confidence 567774 89999999998877611 0 0113333333221 7899999999765 45
Q ss_pred HHHHHHhcCeEEEEEcCCCccccchHHHHH
Q 047363 91 VSTAARLSDGALVLVDAVEGVHIQTHAVLR 120 (876)
Q Consensus 91 ~~~al~~aDgaIlVvDa~egv~~~t~~~l~ 120 (876)
...++..+|.+|+++++..........+++
T Consensus 55 ~~~~l~~ad~viv~~~~~~~s~~~~~~~~~ 84 (104)
T cd02042 55 TRNALAAADLVLIPVQPSPLDLDGLEKLLE 84 (104)
T ss_pred HHHHHHHCCEEEEeccCCHHHHHHHHHHHH
Confidence 568999999999999986443333444443
No 377
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.09 E-value=0.0012 Score=67.31 Aligned_cols=142 Identities=22% Similarity=0.251 Sum_probs=71.0
Q ss_pred EEEEEeCCCCcHHHHHHHHHH-hhCCCC-cc--cccCCceeeccChhhhhhccee---eeeeEEEEEE------------
Q 047363 11 NISILAHVDHGKTTLADHLIA-ATGGGL-LH--PKLAGKLRFMDYLDEEQRRAIT---MKSSSIALHY------------ 71 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~-~t~~g~-i~--~~~~g~~~~~d~~~~E~~rgit---i~~~~i~~~~------------ 71 (876)
.+.|.|..|||||||+++|+. .. .|. +. ....|... .|....+ ..|++ +....+.+..
T Consensus 2 v~ii~GfLGsGKTTli~~ll~~~~-~~~~~~vI~ne~g~~~-iD~~~l~-~~~~~v~~l~~gcicc~~~~~~~~~l~~l~ 78 (178)
T PF02492_consen 2 VIIITGFLGSGKTTLINHLLKRNR-QGERVAVIVNEFGEVN-IDAELLQ-EDGVPVVELNNGCICCTLRDDLVEALRRLL 78 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT-TTS-EEEEECSTTSTH-HHHHHHH-TTT-EEEEECTTTESS-TTS-HHHHHHHHC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhc-CCceeEEEEccccccc-cchhhhc-ccceEEEEecCCCcccccHHHHHHHHHHHH
Confidence 467899999999999999994 31 111 00 01112111 1111111 11222 2222222211
Q ss_pred --c--CeEEEEEcCCCCccchHH-----HHHHHHhcCeEEEEEcCCCccccc-hHHHHHHhhhhcCCcEEEEeccccccc
Q 047363 72 --K--DYAINLIDSPGHMDFCSE-----VSTAARLSDGALVLVDAVEGVHIQ-THAVLRQSWIEKLTPCLVLNKIDRLIS 141 (876)
Q Consensus 72 --~--~~~inlIDTPGh~dF~~e-----~~~al~~aDgaIlVvDa~egv~~~-t~~~l~~~~~~~ip~ilviNKiD~~~~ 141 (876)
. ...+.||-|.|..+...- .....-..+.+|.|||+..-.... ...++ ..+...--++++||+|+...
T Consensus 79 ~~~~~~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~--~~Qi~~ADvIvlnK~D~~~~ 156 (178)
T PF02492_consen 79 REYEERPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELL--REQIAFADVIVLNKIDLVSD 156 (178)
T ss_dssp CCCHGC-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHH--HHHHCT-SEEEEE-GGGHHH
T ss_pred HhcCCCcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhh--hhcchhcCEEEEeccccCCh
Confidence 0 247889999997665433 122233358899999996431111 11111 12334457899999999864
Q ss_pred ccccChHHHHHHHHHHHHHhhh
Q 047363 142 ELKLTPLEAYNRLLRIVHEVNG 163 (876)
Q Consensus 142 e~~~~~~~~~~~l~~~l~~vn~ 163 (876)
+ +..+++.+.+.++|.
T Consensus 157 ~------~~i~~~~~~ir~lnp 172 (178)
T PF02492_consen 157 E------QKIERVREMIRELNP 172 (178)
T ss_dssp H--------HHHHHHHHHHH-T
T ss_pred h------hHHHHHHHHHHHHCC
Confidence 3 233566666666663
No 378
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=97.06 E-value=0.003 Score=67.28 Aligned_cols=64 Identities=11% Similarity=0.030 Sum_probs=46.1
Q ss_pred cCeEEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhh------hhcCCcEEEEeccc
Q 047363 72 KDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSW------IEKLTPCLVLNKID 137 (876)
Q Consensus 72 ~~~~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~------~~~ip~ilviNKiD 137 (876)
++|.+.||||||+.+ ..+..++..||.+|+.+.+..-....+...+.... ..++|..+++|.++
T Consensus 82 ~~yD~iiID~pp~~~--~~~~~al~~aD~vliP~~ps~~d~~~~~~~~~~v~~~~~~~~~~l~~~iv~~~~~ 151 (231)
T PRK13849 82 QGFDYALADTHGGSS--ELNNTIIASSNLLLIPTMLTPLDIDEALSTYRYVIELLLSENLAIPTAILRQRVP 151 (231)
T ss_pred CCCCEEEEeCCCCcc--HHHHHHHHHCCEEEEeccCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEecc
Confidence 368999999999875 66778999999999998886443333333333222 23678889999986
No 379
>PRK12288 GTPase RsgA; Reviewed
Probab=97.06 E-value=0.00065 Score=76.52 Aligned_cols=22 Identities=18% Similarity=0.300 Sum_probs=20.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHHh
Q 047363 11 NISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
.++++|.+|+|||||+|+|+..
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~ 228 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPE 228 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccc
Confidence 4799999999999999999866
No 380
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=97.06 E-value=0.0016 Score=70.78 Aligned_cols=116 Identities=22% Similarity=0.141 Sum_probs=73.5
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCcc-
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMD- 86 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~d- 86 (876)
....|+++|..|+|||||+++|... ...... .-+..+|... + ...+. .+..+.+.||-|+..
T Consensus 177 s~pviavVGYTNaGKsTLikaLT~A---al~p~d--rLFATLDpT~---------h--~a~Lp-sg~~vlltDTvGFisd 239 (410)
T KOG0410|consen 177 SSPVIAVVGYTNAGKSTLIKALTKA---ALYPND--RLFATLDPTL---------H--SAHLP-SGNFVLLTDTVGFISD 239 (410)
T ss_pred CCceEEEEeecCccHHHHHHHHHhh---hcCccc--hhheeccchh---------h--hccCC-CCcEEEEeechhhhhh
Confidence 3578999999999999999999844 222211 0112222211 0 01111 246778999999543
Q ss_pred c-------hHHHHHHHHhcCeEEEEEcCCCcc-ccchHHHHHHhhhhcCCc-------EEEEecccccc
Q 047363 87 F-------CSEVSTAARLSDGALVLVDAVEGV-HIQTHAVLRQSWIEKLTP-------CLVLNKIDRLI 140 (876)
Q Consensus 87 F-------~~e~~~al~~aDgaIlVvDa~egv-~~~t~~~l~~~~~~~ip~-------ilviNKiD~~~ 140 (876)
+ ...+..-+..+|.+|-|+|.++.. ..|-+.++..+.+.++|. +=|=||+|...
T Consensus 240 LP~~LvaAF~ATLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~ 308 (410)
T KOG0410|consen 240 LPIQLVAAFQATLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEE 308 (410)
T ss_pred CcHHHHHHHHHHHHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhcccccccc
Confidence 1 223445556789999999998765 566777888888888762 23557777654
No 381
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=97.03 E-value=0.002 Score=72.73 Aligned_cols=92 Identities=18% Similarity=0.070 Sum_probs=57.1
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhhCCC-Ccccc-------cCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcC
Q 047363 10 RNISILAHVDHGKTTLADHLIAATGGG-LLHPK-------LAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDS 81 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~t~~g-~i~~~-------~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDT 81 (876)
..++|+|.+++|||||.++|... .. .+... ..|.+.+.|.+.+.-..-+ ++. . .....+.++|.
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~--~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~--~~~--~--~~~a~i~~~Di 74 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNL--LGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYI--KPE--K--VPPTTTEFVDI 74 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCC--CccccCCCCCCCCCCceeEEEechhHHHHHHHHh--CCc--C--cCCceEEEEec
Confidence 57899999999999999999876 32 22110 1122222222211100000 000 0 01246889999
Q ss_pred CCCcc-------chHHHHHHHHhcCeEEEEEcCCC
Q 047363 82 PGHMD-------FCSEVSTAARLSDGALVLVDAVE 109 (876)
Q Consensus 82 PGh~d-------F~~e~~~al~~aDgaIlVvDa~e 109 (876)
||.+. +.......+|.+|++++|||+-+
T Consensus 75 aGlv~gAs~g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 75 AGLVGGASKGEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred cccccchhcccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 99765 45578889999999999999964
No 382
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=96.99 E-value=0.0011 Score=64.79 Aligned_cols=51 Identities=24% Similarity=0.177 Sum_probs=44.1
Q ss_pred HHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhh--cCCcEEEEeccccc
Q 047363 89 SEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIE--KLTPCLVLNKIDRL 139 (876)
Q Consensus 89 ~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~--~ip~ilviNKiD~~ 139 (876)
.++..++..+|++++|+|+.++...+...+.+.+... ++|+++|+||+|+.
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~ 55 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLL 55 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcC
Confidence 4678899999999999999988887777777777655 89999999999985
No 383
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=96.98 E-value=0.00098 Score=72.84 Aligned_cols=56 Identities=25% Similarity=0.283 Sum_probs=37.2
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCC
Q 047363 9 IRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGH 84 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh 84 (876)
..+++++|.+|+|||||+|+|+.. ....... ..|.|.....+.+ +..+.++||||.
T Consensus 118 ~~~~~~vG~~nvGKSslin~l~~~--~~~~~~~---------------~~g~T~~~~~~~~---~~~~~l~DtPG~ 173 (276)
T TIGR03596 118 PIRAMIVGIPNVGKSTLINRLAGK--KVAKVGN---------------RPGVTKGQQWIKL---SDGLELLDTPGI 173 (276)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCC--CccccCC---------------CCCeecceEEEEe---CCCEEEEECCCc
Confidence 457999999999999999999865 2111110 1244544433333 246899999997
No 384
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=96.98 E-value=0.0011 Score=67.03 Aligned_cols=57 Identities=21% Similarity=0.225 Sum_probs=37.5
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCC
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGH 84 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh 84 (876)
...+++++|.+|+|||||+++|... ...... ...|.|.....+.+. ..+.++||||.
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~--~~~~~~---------------~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGK--KVAKVG---------------NKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCC--Cceeec---------------CCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 3468999999999999999999865 211100 011344444333332 56899999996
No 385
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.96 E-value=0.0036 Score=72.36 Aligned_cols=62 Identities=24% Similarity=0.403 Sum_probs=37.8
Q ss_pred CeEEEEEcCCCCccchHHHHHHH------HhcCeEEEEEcCCCccccchHHHHHHhhh--hcCCc-EEEEeccccc
Q 047363 73 DYAINLIDSPGHMDFCSEVSTAA------RLSDGALVLVDAVEGVHIQTHAVLRQSWI--EKLTP-CLVLNKIDRL 139 (876)
Q Consensus 73 ~~~inlIDTPGh~dF~~e~~~al------~~aDgaIlVvDa~egv~~~t~~~l~~~~~--~~ip~-ilviNKiD~~ 139 (876)
++.+.||||||...........+ -..|.+++|+|+..| ....+++.. ..+++ =+++||+|..
T Consensus 182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg-----q~~~~~a~~f~~~v~i~giIlTKlD~~ 252 (428)
T TIGR00959 182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG-----QDAVNTAKTFNERLGLTGVVLTKLDGD 252 (428)
T ss_pred CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch-----HHHHHHHHHHHhhCCCCEEEEeCccCc
Confidence 57899999999654433322222 236889999998744 122333322 23343 4789999954
No 386
>PRK10867 signal recognition particle protein; Provisional
Probab=96.94 E-value=0.0048 Score=71.39 Aligned_cols=119 Identities=22% Similarity=0.276 Sum_probs=63.2
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhhC-C-CCcccccCCceee--ccC-hhh--hh------hcceeeeeeE-----EEE-
Q 047363 9 IRNISILAHVDHGKTTLADHLIAATG-G-GLLHPKLAGKLRF--MDY-LDE--EQ------RRAITMKSSS-----IAL- 69 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~t~-~-g~i~~~~~g~~~~--~d~-~~~--E~------~rgiti~~~~-----i~~- 69 (876)
.+.|.++|+.|+||||++-.|..... . |. ++.+ .|. ++. ++ ..|+.+.... ..+
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~-------kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~ 172 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKK-------KVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIA 172 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCC-------cEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHH
Confidence 57789999999999998888765410 1 11 1111 111 111 11 1233221110 000
Q ss_pred -------EEcCeEEEEEcCCCCccchH----HHHHHHH--hcCeEEEEEcCCCccccchHHHHHHhhhh--cCCc-EEEE
Q 047363 70 -------HYKDYAINLIDSPGHMDFCS----EVSTAAR--LSDGALVLVDAVEGVHIQTHAVLRQSWIE--KLTP-CLVL 133 (876)
Q Consensus 70 -------~~~~~~inlIDTPGh~dF~~----e~~~al~--~aDgaIlVvDa~egv~~~t~~~l~~~~~~--~ip~-ilvi 133 (876)
...++.+.||||||...... +.....+ ..|.+++|+|+..| ....+++... .+++ -+|+
T Consensus 173 ~~a~~~a~~~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g-----q~av~~a~~F~~~~~i~giIl 247 (433)
T PRK10867 173 KAALEEAKENGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG-----QDAVNTAKAFNEALGLTGVIL 247 (433)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH-----HHHHHHHHHHHhhCCCCEEEE
Confidence 01257899999999664422 2222222 35788999998643 2233333322 3433 5788
Q ss_pred eccccc
Q 047363 134 NKIDRL 139 (876)
Q Consensus 134 NKiD~~ 139 (876)
||+|-.
T Consensus 248 TKlD~~ 253 (433)
T PRK10867 248 TKLDGD 253 (433)
T ss_pred eCccCc
Confidence 999964
No 387
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.0042 Score=73.30 Aligned_cols=130 Identities=21% Similarity=0.239 Sum_probs=80.4
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccc-------------cCCceee--ccChhhhhh----cc---------
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAATGGGLLHPK-------------LAGKLRF--MDYLDEEQR----RA--------- 59 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~-------------~~g~~~~--~d~~~~E~~----rg--------- 59 (876)
..-.|+|.|..++||||+++++++. . +.... -.|...+ ++..+ |.. ++
T Consensus 108 ~~mKV~ifGrts~GKSt~iNAmL~~--k-lLP~g~gh~TncF~~VegadG~e~vl~~~~s~-ek~d~~ti~~~~haL~~~ 183 (749)
T KOG0448|consen 108 RHMKVAIFGRTSAGKSTVINAMLHK--K-LLPSGIGHTTNCFLEVEGADGAEAVLATEGSE-EKIDMKTINQLAHALKPD 183 (749)
T ss_pred cccEEEEeCCCCCcHHHHHHHHHHH--h-hCcccccccceeeeeecccCCcceeeccCCCc-ccccHHHHhHHHHhcCcc
Confidence 3457999999999999999999987 2 11000 0111111 11100 000 00
Q ss_pred -eeeeeeEEEEEEcC-------eEEEEEcCCCC---ccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCC
Q 047363 60 -ITMKSSSIALHYKD-------YAINLIDSPGH---MDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLT 128 (876)
Q Consensus 60 -iti~~~~i~~~~~~-------~~inlIDTPGh---~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip 128 (876)
-.-..+.+.+.|++ -.+.+||.||. ..+...+-...-.+|..|+|+.+-...+......++.+.+. .|
T Consensus 184 ~~~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~~vs~~-Kp 262 (749)
T KOG0448|consen 184 KDLGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFHKVSEE-KP 262 (749)
T ss_pred cccCcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHHHhhcc-CC
Confidence 01123344555552 36999999995 34667778888889999999999765554444556666555 66
Q ss_pred cEEE-Eecccccccc
Q 047363 129 PCLV-LNKIDRLISE 142 (876)
Q Consensus 129 ~ilv-iNKiD~~~~e 142 (876)
-|++ .||+|....+
T Consensus 263 niFIlnnkwDasase 277 (749)
T KOG0448|consen 263 NIFILNNKWDASASE 277 (749)
T ss_pred cEEEEechhhhhccc
Confidence 6655 5788998654
No 388
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=96.91 E-value=0.0017 Score=65.41 Aligned_cols=66 Identities=18% Similarity=0.068 Sum_probs=51.2
Q ss_pred cCeEEEEEcCCCCccchHHHHHHH--HhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcE-EEEeccccc
Q 047363 72 KDYAINLIDSPGHMDFCSEVSTAA--RLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPC-LVLNKIDRL 139 (876)
Q Consensus 72 ~~~~inlIDTPGh~dF~~e~~~al--~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~i-lviNKiD~~ 139 (876)
.+|.+.++|||+... ......+ ..+|.+|+|+.+.......+...++.+.+.+++++ +|+|+.+..
T Consensus 66 ~~yD~VIiD~pp~~~--~~~~~~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvv~N~~~~~ 134 (169)
T cd02037 66 GELDYLVIDMPPGTG--DEHLTLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKKVNIPILGVVENMSYFV 134 (169)
T ss_pred CCCCEEEEeCCCCCc--HHHHHHHhccCCCeEEEEECCchhhHHHHHHHHHHHHhcCCCeEEEEEcCCccc
Confidence 468999999999753 4444444 68999999998876666667778888888888876 678999864
No 389
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.90 E-value=0.0029 Score=73.28 Aligned_cols=125 Identities=18% Similarity=0.171 Sum_probs=66.6
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChh-----hhhh------cceeeeeeEEEE-------E
Q 047363 9 IRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLD-----EEQR------RAITMKSSSIAL-------H 70 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~-----~E~~------rgiti~~~~i~~-------~ 70 (876)
-++|+++|+.|+||||++-.|..... .. ....++.+.+..+ .|+- .|+.+....-.- .
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~--~~--~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~ 296 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYA--LL--YGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQ 296 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH--Hh--cCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHH
Confidence 36899999999999999998876410 00 0001233322221 1111 122211100000 0
Q ss_pred EcCeEEEEEcCCCCccch----HHHHHHHHh---cCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEeccccc
Q 047363 71 YKDYAINLIDSPGHMDFC----SEVSTAARL---SDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRL 139 (876)
Q Consensus 71 ~~~~~inlIDTPGh~dF~----~e~~~al~~---aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~ 139 (876)
..++.+.||||||+..+. .++...+.. -+-+.+|+++.-+. .....+++.....++ --++++|+|-.
T Consensus 297 ~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~-~~l~~~~~~f~~~~~-~~vI~TKlDet 370 (424)
T PRK05703 297 LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY-EDLKDIYKHFSRLPL-DGLIFTKLDET 370 (424)
T ss_pred hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH-HHHHHHHHHhCCCCC-CEEEEeccccc
Confidence 125789999999987653 333344442 23568889986432 122334444433332 35889999985
No 390
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=96.89 E-value=0.0012 Score=70.96 Aligned_cols=62 Identities=18% Similarity=0.191 Sum_probs=38.8
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhhC--CCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccc
Q 047363 10 RNISILAHVDHGKTTLADHLIAATG--GGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDF 87 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~t~--~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF 87 (876)
+.++++|++|+|||||+|+|+.... .|.++.. ..+-|.+|.....+.+ . ...||||||...|
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~------------~~~G~hTT~~~~l~~l--~--~~~liDtPG~~~~ 184 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSK------------LGLGKHTTTHVELFHF--H--GGLIADTPGFNEF 184 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceecc------------CCCCCCcCCceEEEEc--C--CcEEEeCCCcccc
Confidence 5789999999999999999987611 1122110 0111234544444444 2 2389999997765
No 391
>PRK12289 GTPase RsgA; Reviewed
Probab=96.88 E-value=0.0012 Score=74.45 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=20.2
Q ss_pred EEEEEeCCCCcHHHHHHHHHHh
Q 047363 11 NISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
.++|+|++|+|||||+|+|+..
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~ 195 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPD 195 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCc
Confidence 4799999999999999999865
No 392
>COG1162 Predicted GTPases [General function prediction only]
Probab=96.87 E-value=0.00084 Score=73.13 Aligned_cols=63 Identities=25% Similarity=0.322 Sum_probs=38.5
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhh--CCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccc
Q 047363 10 RNISILAHVDHGKTTLADHLIAAT--GGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDF 87 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~t--~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF 87 (876)
+..+++|++|+|||||+|+|.... ..|.|+... .+-|..|..+..+.+... =.||||||...|
T Consensus 165 ~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~------------~rGkHTTt~~~l~~l~~g---G~iiDTPGf~~~ 229 (301)
T COG1162 165 KITVLLGQSGVGKSTLINALLPELNQKTGEISEKL------------GRGRHTTTHVELFPLPGG---GWIIDTPGFRSL 229 (301)
T ss_pred CeEEEECCCCCcHHHHHHhhCchhhhhhhhhcccC------------CCCCCccceEEEEEcCCC---CEEEeCCCCCcc
Confidence 467899999999999999997641 123333221 011223444433344323 368999998776
No 393
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=96.86 E-value=0.0031 Score=70.31 Aligned_cols=93 Identities=20% Similarity=0.253 Sum_probs=58.1
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhhCCCCccccc-------CCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCC
Q 047363 10 RNISILAHVDHGKTTLADHLIAATGGGLLHPKL-------AGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSP 82 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~-------~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTP 82 (876)
..++|+|-+|+|||||.++|+.. ...+...+ .|.+.+.|-+-.+-.. + .+.+.- .....+.|+|.+
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~--~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~-~-~~c~~k---~~~~~ve~vDIA 75 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKA--GAEIANYPFCTIEPNVGVVYVPDCRLDELAE-I-VKCPPK---IRPAPVEFVDIA 75 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcC--CccccCCCcccccCCeeEEecCchHHHHHHH-h-cCCCCc---EEeeeeEEEEec
Confidence 47899999999999999999876 42222111 1222333322211110 0 110000 112468899999
Q ss_pred CCcc-------chHHHHHHHHhcCeEEEEEcCCC
Q 047363 83 GHMD-------FCSEVSTAARLSDGALVLVDAVE 109 (876)
Q Consensus 83 Gh~d-------F~~e~~~al~~aDgaIlVvDa~e 109 (876)
|.+. +......-+|.+|+++.|||+.+
T Consensus 76 GLV~GAs~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 76 GLVKGASKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred ccCCCcccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 9875 34567888999999999999984
No 394
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=96.84 E-value=0.0021 Score=66.73 Aligned_cols=118 Identities=14% Similarity=0.213 Sum_probs=74.4
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEc-CeEEEEEcCCCCcc
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYK-DYAINLIDSPGHMD 86 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~-~~~inlIDTPGh~d 86 (876)
.-|.|.++|.+|+|||++-..+... . + ..+...-|-||+....++.+- +.-+|+||+.|+..
T Consensus 3 ~~kKvlLMGrsGsGKsSmrsiiF~n--y--~-------------a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~ 65 (295)
T KOG3886|consen 3 MKKKVLLMGRSGSGKSSMRSIIFAN--Y--I-------------ARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEE 65 (295)
T ss_pred ccceEEEeccCCCCccccchhhhhh--h--h-------------hhhhhccCCcceeeehhhhhhhhheeehhccCCcHH
Confidence 3478999999999999987665533 1 0 011122344444433334333 36789999999998
Q ss_pred chHHHHH-----HHHhcCeEEEEEcCCCccccch----HHHHHHhhhh--cCCcEEEEecccccccc
Q 047363 87 FCSEVST-----AARLSDGALVLVDAVEGVHIQT----HAVLRQSWIE--KLTPCLVLNKIDRLISE 142 (876)
Q Consensus 87 F~~e~~~-----al~~aDgaIlVvDa~egv~~~t----~~~l~~~~~~--~ip~ilviNKiD~~~~e 142 (876)
|.....+ .++..+..+.|+|+........ ...++...+. ..++.+.+.|+|+.-.+
T Consensus 66 fmen~~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d 132 (295)
T KOG3886|consen 66 FMENYLSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQED 132 (295)
T ss_pred HHHHHHhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccc
Confidence 8655444 5677899999999875432222 2233333322 23567789999998655
No 395
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=96.82 E-value=0.0049 Score=65.69 Aligned_cols=65 Identities=22% Similarity=0.194 Sum_probs=47.6
Q ss_pred CeEEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCc-EEEEeccccc
Q 047363 73 DYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTP-CLVLNKIDRL 139 (876)
Q Consensus 73 ~~~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~-ilviNKiD~~ 139 (876)
.|.+.|||||+..+ ..+..++..+|.+|+|+++.......+...+..+...+++. .+++|+.+..
T Consensus 108 ~yD~VIiD~p~~~~--~~~~~~l~~ad~vliv~~~~~~s~~~~~~~~~~~~~~~~~~~~vv~N~~~~~ 173 (251)
T TIGR01969 108 DTDFLLIDAPAGLE--RDAVTALAAADELLLVVNPEISSITDALKTKIVAEKLGTAILGVVLNRVTRD 173 (251)
T ss_pred hCCEEEEeCCCccC--HHHHHHHHhCCeEEEEECCCCchHHHHHHHHHHHHhcCCceEEEEEECCCch
Confidence 58999999999765 46777888999999999986443333444445555566765 4789999864
No 396
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=96.82 E-value=0.0022 Score=71.58 Aligned_cols=82 Identities=13% Similarity=0.065 Sum_probs=62.2
Q ss_pred ceeeeeeEEEEEEcCeEEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCccc-----------cchHHHHHHhh----
Q 047363 59 AITMKSSSIALHYKDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVH-----------IQTHAVLRQSW---- 123 (876)
Q Consensus 59 giti~~~~i~~~~~~~~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv~-----------~~t~~~l~~~~---- 123 (876)
..|.......+.+++..+.++|++|+..+...+...+..++++|+|||..+-.. ..+..+++.+.
T Consensus 146 ~~T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~ 225 (317)
T cd00066 146 VKTTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRW 225 (317)
T ss_pred cccCCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCcc
Confidence 344455556778889999999999999999999999999999999999986321 11222333332
Q ss_pred hhcCCcEEEEecccccc
Q 047363 124 IEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 124 ~~~ip~ilviNKiD~~~ 140 (876)
-.++|++|++||.|+..
T Consensus 226 ~~~~pill~~NK~D~f~ 242 (317)
T cd00066 226 FANTSIILFLNKKDLFE 242 (317)
T ss_pred ccCCCEEEEccChHHHH
Confidence 24789999999999874
No 397
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=96.82 E-value=0.0013 Score=72.36 Aligned_cols=66 Identities=24% Similarity=0.321 Sum_probs=39.5
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccch
Q 047363 10 RNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFC 88 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~ 88 (876)
+.++++|++|+|||||+++|+.. .... .|.+.. ....-++.|.....+.+.. ...++||||..+|.
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~--~~~~----~g~v~~----~~~~g~~tT~~~~~~~~~~---~~~liDtPG~~~~~ 227 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPD--LDLA----TGEISE----KLGRGRHTTTHRELFPLPG---GGLLIDTPGFREFG 227 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhch--hhcc----ccceec----cCCCCCcccceEEEEEcCC---CCEEEECCCCCccC
Confidence 67999999999999999999876 2110 122211 0111223444433333322 34799999987763
No 398
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=96.80 E-value=0.0017 Score=71.45 Aligned_cols=58 Identities=24% Similarity=0.284 Sum_probs=38.9
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCcc
Q 047363 9 IRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMD 86 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~d 86 (876)
..+|+++|.+|+|||||+|+|++. ....... ..|+|.....+.+ +..+.++||||...
T Consensus 121 ~~~~~~~G~pnvGKSsliN~l~~~--~~~~~~~---------------~~g~T~~~~~~~~---~~~~~l~DtPGi~~ 178 (287)
T PRK09563 121 AIRAMIIGIPNVGKSTLINRLAGK--KIAKTGN---------------RPGVTKAQQWIKL---GKGLELLDTPGILW 178 (287)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC--CccccCC---------------CCCeEEEEEEEEe---CCcEEEEECCCcCC
Confidence 457999999999999999999875 2111110 1255555433222 45689999999754
No 399
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=96.79 E-value=0.0027 Score=66.45 Aligned_cols=63 Identities=21% Similarity=0.188 Sum_probs=47.0
Q ss_pred eEEEEEcC-CCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhc-CCcEEEEeccccc
Q 047363 74 YAINLIDS-PGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEK-LTPCLVLNKIDRL 139 (876)
Q Consensus 74 ~~inlIDT-PGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~-ip~ilviNKiD~~ 139 (876)
+.+.++|| +|...|..-+ .+.+|.+|+|+|++-.-....+++-+.+.+.+ .++.+|+||+|-.
T Consensus 134 ~e~VivDtEAGiEHfgRg~---~~~vD~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e~ 198 (255)
T COG3640 134 YEVVIVDTEAGIEHFGRGT---IEGVDLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDEE 198 (255)
T ss_pred CcEEEEecccchhhhcccc---ccCCCEEEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEEEeeccch
Confidence 67888998 5666665443 45689999999987544445566777778888 5677889999875
No 400
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.76 E-value=0.0036 Score=70.62 Aligned_cols=26 Identities=31% Similarity=0.227 Sum_probs=22.6
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHh
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
.+-+.|+++|+.|+||||++..|...
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~ 229 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQ 229 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999999765
No 401
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.74 E-value=0.0054 Score=70.19 Aligned_cols=121 Identities=20% Similarity=0.172 Sum_probs=63.6
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhh--CCCCcccccCCceeec--cChh---hhhh------cceeeeeeE-E-----EEE
Q 047363 10 RNISILAHVDHGKTTLADHLIAAT--GGGLLHPKLAGKLRFM--DYLD---EEQR------RAITMKSSS-I-----ALH 70 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~t--~~g~i~~~~~g~~~~~--d~~~---~E~~------rgiti~~~~-i-----~~~ 70 (876)
+.|+++|++|+||||++..|.... ..|. ++.+. |... .++. .|+...... . .+.
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~-------~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~ 296 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGK-------SVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLA 296 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCC-------eEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHH
Confidence 458999999999999999998641 1111 11111 2111 1111 122211000 0 000
Q ss_pred EcCeEEEEEcCCCCccchH----HHHHHHHhc-----CeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEeccccc
Q 047363 71 YKDYAINLIDSPGHMDFCS----EVSTAARLS-----DGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRL 139 (876)
Q Consensus 71 ~~~~~inlIDTPGh~dF~~----e~~~al~~a-----DgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~ 139 (876)
-.++.+.||||||+..... ++...++.. .-.++|+|+..+... ...+.+.....+ +-=++++|+|-.
T Consensus 297 ~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~-~~~~~~~f~~~~-~~glIlTKLDEt 372 (432)
T PRK12724 297 RDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHH-TLTVLKAYESLN-YRRILLTKLDEA 372 (432)
T ss_pred hCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHH-HHHHHHHhcCCC-CCEEEEEcccCC
Confidence 1267899999999865432 333333322 257899999865422 222333222222 345889999986
No 402
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=96.72 E-value=0.0019 Score=64.25 Aligned_cols=51 Identities=22% Similarity=0.124 Sum_probs=40.8
Q ss_pred HHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhh--hcCCcEEEEecccccc
Q 047363 90 EVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWI--EKLTPCLVLNKIDRLI 140 (876)
Q Consensus 90 e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~--~~ip~ilviNKiD~~~ 140 (876)
++..++..+|.+++|+|+.+........+.+.+.. .++|+++|+||+|+..
T Consensus 1 ~~~~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~ 53 (157)
T cd01858 1 ELYKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVP 53 (157)
T ss_pred ChhHhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCC
Confidence 35688999999999999998776666666666544 3489999999999963
No 403
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.70 E-value=0.0033 Score=71.01 Aligned_cols=129 Identities=19% Similarity=0.227 Sum_probs=69.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChh---hhhhc------ceeeeeeEEEE-------EE
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLD---EEQRR------AITMKSSSIAL-------HY 71 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~---~E~~r------giti~~~~i~~-------~~ 71 (876)
+-|.|+++|+.|+||||.+-.|... .........-.+-.+|++. .||-+ |+.+....-.- .+
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar--~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l 279 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAAR--YVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEAL 279 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHH--HHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHh
Confidence 4689999999999999988888766 2211111000112244443 24432 33322110000 01
Q ss_pred cCeEEEEEcCCCCccc----hHHHHHHHHhc--CeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccc
Q 047363 72 KDYAINLIDSPGHMDF----CSEVSTAARLS--DGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 72 ~~~~inlIDTPGh~dF----~~e~~~al~~a--DgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~ 140 (876)
.++.+.||||.|+.-. ..++...+..+ .-.-||+++..- ......++.+....++. =++++|+|-..
T Consensus 280 ~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K-~~dlkei~~~f~~~~i~-~~I~TKlDET~ 352 (407)
T COG1419 280 RDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK-YEDLKEIIKQFSLFPID-GLIFTKLDETT 352 (407)
T ss_pred hcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc-hHHHHHHHHHhccCCcc-eeEEEcccccC
Confidence 2689999999997654 34455545444 345677777521 11123344433332222 36789999863
No 404
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=96.70 E-value=0.0027 Score=66.56 Aligned_cols=83 Identities=24% Similarity=0.401 Sum_probs=62.1
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccc--
Q 047363 10 RNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDF-- 87 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF-- 87 (876)
-.|+++|.+.+|||||+..+... |+.+ ....+ .|...-+..+.|++..|.++|.||.+.-
T Consensus 63 aRValIGfPSVGKStlLs~iT~T-~Sea------A~yeF-----------TTLtcIpGvi~y~ga~IQllDLPGIieGAs 124 (364)
T KOG1486|consen 63 ARVALIGFPSVGKSTLLSKITST-HSEA------ASYEF-----------TTLTCIPGVIHYNGANIQLLDLPGIIEGAS 124 (364)
T ss_pred eEEEEecCCCccHHHHHHHhhcc-hhhh------hceee-----------eEEEeecceEEecCceEEEecCcccccccc
Confidence 46899999999999999888654 2211 11111 2455556678889999999999998764
Q ss_pred -----hHHHHHHHHhcCeEEEEEcCCCc
Q 047363 88 -----CSEVSTAARLSDGALVLVDAVEG 110 (876)
Q Consensus 88 -----~~e~~~al~~aDgaIlVvDa~eg 110 (876)
...+.+..|-||.++.|+|+..+
T Consensus 125 qgkGRGRQviavArtaDlilMvLDatk~ 152 (364)
T KOG1486|consen 125 QGKGRGRQVIAVARTADLILMVLDATKS 152 (364)
T ss_pred cCCCCCceEEEEeecccEEEEEecCCcc
Confidence 34577788899999999999854
No 405
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=96.69 E-value=0.0031 Score=64.44 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=22.5
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHh
Q 047363 9 IRNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
++.|.+.|++|||||||+++++..
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~ 36 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRA 36 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHH
Confidence 689999999999999999999887
No 406
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=96.67 E-value=0.0025 Score=63.05 Aligned_cols=25 Identities=16% Similarity=0.313 Sum_probs=21.9
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHh
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
..++++++|.+++|||||+++|.+.
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~ 124 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGR 124 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999999754
No 407
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.67 E-value=0.0071 Score=69.05 Aligned_cols=128 Identities=18% Similarity=0.172 Sum_probs=68.4
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCcee--eccChh---hhhh------cceeeeeeEEE-------EE
Q 047363 9 IRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLR--FMDYLD---EEQR------RAITMKSSSIA-------LH 70 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~--~~d~~~---~E~~------rgiti~~~~i~-------~~ 70 (876)
-+.|+++|+.|+||||++-.|... ..........++. ..|... .++- -|+.+...... -.
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~--~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~ 251 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAI--YGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQ 251 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHH
Confidence 478999999999999999988765 1100000001221 122211 1121 12222110000 01
Q ss_pred EcCeEEEEEcCCCCccch----HHHHHHHHhc--C-eEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccc
Q 047363 71 YKDYAINLIDSPGHMDFC----SEVSTAARLS--D-GALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 71 ~~~~~inlIDTPGh~dF~----~e~~~al~~a--D-gaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~ 140 (876)
..++.+.||||||..... .++...+..+ + -.++|+|++.+... ...+++.....+ +-=++++|+|-..
T Consensus 252 ~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~-~~~~~~~~~~~~-~~~~I~TKlDet~ 326 (388)
T PRK12723 252 SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSD-VKEIFHQFSPFS-YKTVIFTKLDETT 326 (388)
T ss_pred hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHH-HHHHHHHhcCCC-CCEEEEEeccCCC
Confidence 136899999999976432 3444454543 3 47899999876322 223333332211 4568899999863
No 408
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=96.66 E-value=0.014 Score=67.00 Aligned_cols=138 Identities=17% Similarity=0.284 Sum_probs=87.5
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCc--------ee----------eccC------hh--------h
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGK--------LR----------FMDY------LD--------E 54 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~--------~~----------~~d~------~~--------~ 54 (876)
++.+.|+++|.-.+||||.++.+... .|-++..|. ++ +-|+ .. .
T Consensus 306 DhLPRVVVVGDQSaGKTSVLEmiAqA----RIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~ 381 (980)
T KOG0447|consen 306 DHLPRVVVVGDQSAGKTSVLEMIAQA----RIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRH 381 (980)
T ss_pred ccCceEEEEcCccccchHHHHHHHHh----ccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHH
Confidence 57889999999999999999998765 121121111 10 1111 11 1
Q ss_pred hh--------hcceeeeeeEEEEEEcC---eEEEEEcCCCCccc-------------hHHHHHHHHhcCeEEEEEc-CC-
Q 047363 55 EQ--------RRAITMKSSSIALHYKD---YAINLIDSPGHMDF-------------CSEVSTAARLSDGALVLVD-AV- 108 (876)
Q Consensus 55 E~--------~rgiti~~~~i~~~~~~---~~inlIDTPGh~dF-------------~~e~~~al~~aDgaIlVvD-a~- 108 (876)
|. +.|-|+....|++..++ -+..++|.||.+.- ....-..+..-.++|++|- ++
T Consensus 382 e~E~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSV 461 (980)
T KOG0447|consen 382 EIELRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSV 461 (980)
T ss_pred HHHHHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCc
Confidence 11 24888888888888774 57899999996532 2334455566677777753 22
Q ss_pred CccccchHHHHHHhhhhcCCcEEEEecccccccccccChHH
Q 047363 109 EGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLISELKLTPLE 149 (876)
Q Consensus 109 egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~~e~~~~~~~ 149 (876)
+.-......+.-++.-.|...|+|++|+|+...++. +|+.
T Consensus 462 DAERSnVTDLVsq~DP~GrRTIfVLTKVDlAEknlA-~PdR 501 (980)
T KOG0447|consen 462 DAERSIVTDLVSQMDPHGRRTIFVLTKVDLAEKNVA-SPSR 501 (980)
T ss_pred chhhhhHHHHHHhcCCCCCeeEEEEeecchhhhccC-CHHH
Confidence 212223334556777788899999999999876543 4443
No 409
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.65 E-value=0.0034 Score=72.24 Aligned_cols=126 Identities=17% Similarity=0.113 Sum_probs=63.9
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhh--CCCCcccccCCceeeccChh---hhh------hcceeeeeeEEE-------EE
Q 047363 9 IRNISILAHVDHGKTTLADHLIAAT--GGGLLHPKLAGKLRFMDYLD---EEQ------RRAITMKSSSIA-------LH 70 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~t--~~g~i~~~~~g~~~~~d~~~---~E~------~rgiti~~~~i~-------~~ 70 (876)
-+.|+++|+.|+||||++..|.+.. ..+... +.+-..|... .|+ ..|+.+....-. ..
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~----v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~ 266 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADK----VALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHE 266 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCe----EEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHH
Confidence 4689999999999999999887641 011000 0110111111 111 123322111000 01
Q ss_pred EcCeEEEEEcCCCCccchHHHHH---HHHh---cCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccc
Q 047363 71 YKDYAINLIDSPGHMDFCSEVST---AARL---SDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 71 ~~~~~inlIDTPGh~dF~~e~~~---al~~---aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~ 140 (876)
+.++.+.+|||+|......+... .+.. .+-.+||+|+.-+-.. ...+++.....+ .-=++++|+|-..
T Consensus 267 l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~-~~~~~~~f~~~~-~~~~I~TKlDEt~ 340 (420)
T PRK14721 267 LRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDT-LDEVISAYQGHG-IHGCIITKVDEAA 340 (420)
T ss_pred hcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHH-HHHHHHHhcCCC-CCEEEEEeeeCCC
Confidence 23678999999997765333222 2322 2346899999743221 122222222211 2347899999863
No 410
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=96.64 E-value=0.0043 Score=69.91 Aligned_cols=83 Identities=17% Similarity=0.079 Sum_probs=63.2
Q ss_pred cceeeeeeEEEEEEcCeEEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCcc-----------ccchHHHHHHhh---
Q 047363 58 RAITMKSSSIALHYKDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGV-----------HIQTHAVLRQSW--- 123 (876)
Q Consensus 58 rgiti~~~~i~~~~~~~~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv-----------~~~t~~~l~~~~--- 123 (876)
|..|.......+.+++..+.++|..|+..+...+...+..++++|+|||.++-. ...+..+++.+.
T Consensus 168 r~~T~Gi~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~ 247 (342)
T smart00275 168 RVPTTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSR 247 (342)
T ss_pred eCCccceEEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCc
Confidence 344445556678888999999999999999999999999999999999998631 112233344332
Q ss_pred -hhcCCcEEEEecccccc
Q 047363 124 -IEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 124 -~~~ip~ilviNKiD~~~ 140 (876)
-.++|++|++||.|+..
T Consensus 248 ~~~~~piil~~NK~D~~~ 265 (342)
T smart00275 248 WFANTSIILFLNKIDLFE 265 (342)
T ss_pred cccCCcEEEEEecHHhHH
Confidence 24689999999999975
No 411
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.62 E-value=0.0058 Score=71.45 Aligned_cols=123 Identities=22% Similarity=0.214 Sum_probs=64.1
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhh--CCCCcccccCCceeec--cCh---hhhh------hcceeeeeeEEE-------
Q 047363 9 IRNISILAHVDHGKTTLADHLIAAT--GGGLLHPKLAGKLRFM--DYL---DEEQ------RRAITMKSSSIA------- 68 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~t--~~g~i~~~~~g~~~~~--d~~---~~E~------~rgiti~~~~i~------- 68 (876)
-+.|+++|+.|+||||++..|.... ..|. .++.+. |.. ..|+ .+|+.+....-.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~------~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL 329 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGA------SKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLAL 329 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCC------CeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHH
Confidence 3679999999999999999998651 0111 012111 221 0121 223332211000
Q ss_pred EEEcCeEEEEEcCCCCccchHHHHHHHH-hcCe-----EEEEEcCCCccccchHHHHHHhhhhcCCcEEEEeccccc
Q 047363 69 LHYKDYAINLIDSPGHMDFCSEVSTAAR-LSDG-----ALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRL 139 (876)
Q Consensus 69 ~~~~~~~inlIDTPGh~dF~~e~~~al~-~aDg-----aIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~ 139 (876)
....++.+.+|||+|.......+...+. ..+. .++|+|+..+.. ....+++.....+ .--+++||+|-.
T Consensus 330 ~~L~d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~-~l~~i~~~f~~~~-~~g~IlTKlDet 404 (484)
T PRK06995 330 SELRNKHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGD-TLNEVVQAYRGPG-LAGCILTKLDEA 404 (484)
T ss_pred HhccCCCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHH-HHHHHHHHhccCC-CCEEEEeCCCCc
Confidence 1123578999999995544332222222 1222 689999975432 1122222222222 345788999976
No 412
>COG1161 Predicted GTPases [General function prediction only]
Probab=96.57 E-value=0.0034 Score=70.10 Aligned_cols=57 Identities=26% Similarity=0.359 Sum_probs=40.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCcc
Q 047363 10 RNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMD 86 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~d 86 (876)
..+.++|-+|+|||||+|+|++. ..+.... ..|+|....-+.+ +..+.|+||||..-
T Consensus 133 ~~v~vvG~PNVGKSslIN~L~~k--~~~~~s~---------------~PG~Tk~~q~i~~---~~~i~LlDtPGii~ 189 (322)
T COG1161 133 IRVGVVGYPNVGKSTLINRLLGK--KVAKTSN---------------RPGTTKGIQWIKL---DDGIYLLDTPGIIP 189 (322)
T ss_pred eEEEEEcCCCCcHHHHHHHHhcc--cceeeCC---------------CCceecceEEEEc---CCCeEEecCCCcCC
Confidence 55999999999999999999987 4322221 1266655444444 45699999999543
No 413
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=96.55 E-value=0.011 Score=63.47 Aligned_cols=64 Identities=17% Similarity=0.269 Sum_probs=48.5
Q ss_pred CeEEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcC-CcEEEEecccc
Q 047363 73 DYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKL-TPCLVLNKIDR 138 (876)
Q Consensus 73 ~~~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~i-p~ilviNKiD~ 138 (876)
.|.+.|||||+..+ ..+..++..+|.+|+|+.+.......+..+++.+...+. +..+++|+++.
T Consensus 111 ~~D~viiD~p~~~~--~~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~iviN~~~~ 175 (261)
T TIGR01968 111 EFDYVIIDCPAGIE--SGFRNAVAPADEAIVVTTPEVSAVRDADRVIGLLEAKGIEKIHLIVNRLRP 175 (261)
T ss_pred hCCEEEEeCCCCcC--HHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHHHcCCCceEEEEeCcCc
Confidence 48899999999765 456678899999999999875555555666666655554 56789999975
No 414
>cd03693 EF1_alpha_II EF1_alpha_II: this family represents the domain II of elongation factor 1-alpha (EF-1a) that is found in archaea and all eukaryotic lineages. EF-1A is very abundant in the cytosol, where it is involved in the GTP-dependent binding of aminoacyl-tRNAs to the A site of the ribosomes in the second step of translation from mRNAs to proteins. Both domain II of EF1A and domain IV of IF2/eIF5B have been implicated in recognition of the 3'-ends of tRNA. More than 61% of eukaryotic elongation factor 1A (eEF-1A) in cells is estimated to be associated with actin cytoskeleton. The binding of eEF1A to actin is a noncanonical function that may link two distinct cellular processes, cytoskeleton organization and gene expression.
Probab=96.48 E-value=0.019 Score=51.89 Aligned_cols=83 Identities=18% Similarity=0.256 Sum_probs=58.4
Q ss_pred CCCeEEEEEEeeeecccccCCCCCCccccccccCCCCCCCCccceEEEEEEEeCccCCCCEEEEeccccCCcchhhhccc
Q 047363 395 EAPCVAFVSKMFAVPIKMLPQRGSNGEILDNYADKGGNGESEECFLAFARIFSGVLYSGQRVFVLSALYDPLKVESMQKH 474 (876)
Q Consensus 395 ~~plv~~V~K~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iaf~RV~SGtL~~G~~v~vlg~~y~~~~~~~~~~~ 474 (876)
+.|+.+.|...|..+. ...+..+||.+|+++.||+|+++..+
T Consensus 2 ~~p~r~~V~~vf~~~g--------------------------~g~vv~G~v~~G~i~~gd~v~i~P~~------------ 43 (91)
T cd03693 2 DKPLRLPIQDVYKIGG--------------------------IGTVPVGRVETGVLKPGMVVTFAPAG------------ 43 (91)
T ss_pred CCCeEEEEEEEEEeCC--------------------------ceEEEEEEEecceeecCCEEEECCCC------------
Confidence 3578888888875431 11478999999999999999987421
Q ss_pred cceeEEeEEEEecCCceeecceeeCCCeEEEe--cCC-ceeeccceecC
Q 047363 475 IQEAELQSLYLMMGQGLKPVASAKAGNVVAIR--GLG-QQILKSATLSS 520 (876)
Q Consensus 475 ~~~~~I~~L~l~~G~~~~~v~~v~AGnIv~I~--GL~-~~i~k~~Tl~s 520 (876)
...+|..|... ..++++|.||+.++|. |++ ..+.+|+-|++
T Consensus 44 -~~~~V~sI~~~----~~~~~~a~aG~~v~i~l~~i~~~~v~~G~vl~~ 87 (91)
T cd03693 44 -VTGEVKSVEMH----HEPLEEALPGDNVGFNVKNVSKKDIKRGDVAGD 87 (91)
T ss_pred -cEEEEEEEEEC----CcCcCEECCCCEEEEEECCCCHHHcCCcCEEcc
Confidence 24788888754 3568999999999985 322 12455665554
No 415
>PRK13796 GTPase YqeH; Provisional
Probab=96.47 E-value=0.0028 Score=72.11 Aligned_cols=60 Identities=23% Similarity=0.355 Sum_probs=38.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhhCC-CCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCc
Q 047363 10 RNISILAHVDHGKTTLADHLIAATGG-GLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHM 85 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~t~~-g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~ 85 (876)
+++.++|.+|+|||||+|+|+.. . |... ..+ .....|.|.....+.+ . ....++||||..
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~--~~~~~~-----~~~------~s~~pGTT~~~~~~~l--~-~~~~l~DTPGi~ 221 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKE--ITGEKD-----VIT------TSRFPGTTLDKIEIPL--D-DGSFLYDTPGII 221 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhh--ccCccc-----eEE------ecCCCCccceeEEEEc--C-CCcEEEECCCcc
Confidence 58999999999999999999976 2 1100 001 1123466655443333 2 235899999964
No 416
>PHA02518 ParA-like protein; Provisional
Probab=96.46 E-value=0.015 Score=60.31 Aligned_cols=64 Identities=13% Similarity=0.136 Sum_probs=42.8
Q ss_pred CeEEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhh-----hcCCcE-EEEecccc
Q 047363 73 DYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWI-----EKLTPC-LVLNKIDR 138 (876)
Q Consensus 73 ~~~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~-----~~ip~i-lviNKiD~ 138 (876)
.|.+.||||||.. ...+..++..||.+|+++.+..-.......+++.+.. .+.|.+ ++.|+.+.
T Consensus 76 ~~d~viiD~p~~~--~~~~~~~l~~aD~viip~~ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~n~~~~ 145 (211)
T PHA02518 76 GYDYVVVDGAPQD--SELARAALRIADMVLIPVQPSPFDIWAAPDLVELIKARQEVTDGLPKFAFIISRAIK 145 (211)
T ss_pred cCCEEEEeCCCCc--cHHHHHHHHHCCEEEEEeCCChhhHHHHHHHHHHHHHHHhhCCCCceEEEEEeccCC
Confidence 5899999999974 4667889999999999999875433333333333222 245554 56677654
No 417
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=96.38 E-value=0.0053 Score=60.79 Aligned_cols=51 Identities=24% Similarity=0.141 Sum_probs=41.2
Q ss_pred HHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEeccccc
Q 047363 89 SEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRL 139 (876)
Q Consensus 89 ~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~ 139 (876)
......++.+|.+|+|+|+.++...+...+.+.+...+.|+++|+||+|+.
T Consensus 4 ~~~~~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~ 54 (156)
T cd01859 4 RLVRRIIKESDVVLEVLDARDPELTRSRKLERYVLELGKKLLIVLNKADLV 54 (156)
T ss_pred HHHHHHHhhCCEEEEEeeCCCCcccCCHHHHHHHHhCCCcEEEEEEhHHhC
Confidence 345666777999999999988776666666666666789999999999985
No 418
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=96.30 E-value=0.0061 Score=66.20 Aligned_cols=77 Identities=18% Similarity=0.188 Sum_probs=49.6
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCc-cch
Q 047363 10 RNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHM-DFC 88 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~-dF~ 88 (876)
.|+.|+|-+|+|||||+|++... ...... . ...-.+.|+|+..+..--....-.++++||||.. .-.
T Consensus 144 ~~vmVvGvPNVGKSsLINa~r~~--~Lrk~k-----~-----a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGil~P~I 211 (335)
T KOG2485|consen 144 YNVMVVGVPNVGKSSLINALRNV--HLRKKK-----A-----ARVGAEPGVTRRVSERIRISHRPPVYLIDTPGILVPSI 211 (335)
T ss_pred eeEEEEcCCCCChHHHHHHHHHH--Hhhhcc-----c-----eeccCCCCceeeehhheEeccCCceEEecCCCcCCCCC
Confidence 58999999999999999999766 322210 0 0111245888877764444556779999999943 223
Q ss_pred HHHHHHHHhc
Q 047363 89 SEVSTAARLS 98 (876)
Q Consensus 89 ~e~~~al~~a 98 (876)
...+.+++.|
T Consensus 212 ~~~e~~lKLA 221 (335)
T KOG2485|consen 212 VDVEDGLKLA 221 (335)
T ss_pred CCHHHhhhhh
Confidence 3444555543
No 419
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.30 E-value=0.0062 Score=74.48 Aligned_cols=125 Identities=20% Similarity=0.189 Sum_probs=63.6
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhh--CCCCcccccCCceee--ccChh---hhhh------cceeeeeeEE--EE----
Q 047363 9 IRNISILAHVDHGKTTLADHLIAAT--GGGLLHPKLAGKLRF--MDYLD---EEQR------RAITMKSSSI--AL---- 69 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~t--~~g~i~~~~~g~~~~--~d~~~---~E~~------rgiti~~~~i--~~---- 69 (876)
-+.|+++|+.|+||||++..|.... ..|. .++.+ .|... .|+- .|+.+....- .+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~------kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al 258 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGA------DQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFAL 258 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCC------CeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHH
Confidence 3678999999999999999997641 0110 01211 12111 1221 1322211000 00
Q ss_pred -EEcCeEEEEEcCCCCccchHHHHHHHHh------cCeEEEEEcCCCccccchHHHHHHhhhh-cC-CcEEEEecccccc
Q 047363 70 -HYKDYAINLIDSPGHMDFCSEVSTAARL------SDGALVLVDAVEGVHIQTHAVLRQSWIE-KL-TPCLVLNKIDRLI 140 (876)
Q Consensus 70 -~~~~~~inlIDTPGh~dF~~e~~~al~~------aDgaIlVvDa~egv~~~t~~~l~~~~~~-~i-p~ilviNKiD~~~ 140 (876)
...++.+.||||||......+....+.. -+-.++|+|+..+.. ....+++..... .+ +-=++++|+|-..
T Consensus 259 ~~~~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~-~l~~i~~~f~~~~~~~i~glIlTKLDEt~ 337 (767)
T PRK14723 259 AALGDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGD-TLNEVVHAYRHGAGEDVDGCIITKLDEAT 337 (767)
T ss_pred HHhcCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHH-HHHHHHHHHhhcccCCCCEEEEeccCCCC
Confidence 1236789999999954433333332222 235799999974321 111222222211 11 3357899999863
No 420
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.28 E-value=0.014 Score=63.42 Aligned_cols=124 Identities=16% Similarity=0.104 Sum_probs=64.5
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceee--ccChh---hhh------hcceeeeeeEE---------E
Q 047363 9 IRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRF--MDYLD---EEQ------RRAITMKSSSI---------A 68 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~--~d~~~---~E~------~rgiti~~~~i---------~ 68 (876)
...|+++|+.|+||||++..|....+... ..+.+ .|... .++ .-|+.+....- .
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~------~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~ 148 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGKK------KTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTY 148 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHcC------CeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHH
Confidence 47899999999999999998876521100 01111 11110 001 01222111000 0
Q ss_pred E-EEcCeEEEEEcCCCCccchH----HHHHHHHh--cCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccc
Q 047363 69 L-HYKDYAINLIDSPGHMDFCS----EVSTAARL--SDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 69 ~-~~~~~~inlIDTPGh~dF~~----e~~~al~~--aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~ 140 (876)
+ ...++.+.||||||...... ++...++. -|-.++|+|+..+-. ....+++..... -+-=++++|+|-..
T Consensus 149 l~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~-d~~~~~~~f~~~-~~~~~I~TKlDet~ 225 (270)
T PRK06731 149 FKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSK-DMIEIITNFKDI-HIDGIVFTKFDETA 225 (270)
T ss_pred HHhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHH-HHHHHHHHhCCC-CCCEEEEEeecCCC
Confidence 0 01257899999999875433 33333332 356799999863321 122233333221 23457899999864
No 421
>PRK00098 GTPase RsgA; Reviewed
Probab=96.28 E-value=0.0041 Score=68.75 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=20.8
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 047363 10 RNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
+.++++|++|+|||||+++|+..
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~ 187 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPD 187 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999865
No 422
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=96.15 E-value=0.029 Score=49.69 Aligned_cols=76 Identities=24% Similarity=0.271 Sum_probs=52.1
Q ss_pred EEEEeCCCCcHHHHHHHHHHhhCCCCcccccCC-ceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccchHH
Q 047363 12 ISILAHVDHGKTTLADHLIAATGGGLLHPKLAG-KLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFCSE 90 (876)
Q Consensus 12 I~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g-~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~~e 90 (876)
+++.|..|+||||++..|...... .| ++...| .+.++|+||..+....
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~-------~g~~v~~~~------------------------d~iivD~~~~~~~~~~ 50 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK-------RGKRVLLID------------------------DYVLIDTPPGLGLLVL 50 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-------CCCeEEEEC------------------------CEEEEeCCCCccchhh
Confidence 678888999999999999877211 01 111111 7899999997764321
Q ss_pred -HHHHHHhcCeEEEEEcCCCccccchHHH
Q 047363 91 -VSTAARLSDGALVLVDAVEGVHIQTHAV 118 (876)
Q Consensus 91 -~~~al~~aDgaIlVvDa~egv~~~t~~~ 118 (876)
....+..+|.++++++............
T Consensus 51 ~~~~~~~~~~~vi~v~~~~~~~~~~~~~~ 79 (99)
T cd01983 51 LCLLALLAADLVIIVTTPEALAVLGARRL 79 (99)
T ss_pred hhhhhhhhCCEEEEecCCchhhHHHHHHH
Confidence 2677888999999999876554444433
No 423
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=96.06 E-value=0.0052 Score=70.56 Aligned_cols=74 Identities=16% Similarity=0.214 Sum_probs=49.3
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccch
Q 047363 9 IRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFC 88 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~ 88 (876)
.-+|++||-+|+||||++|+|.+. ..+-.+... |.|-.-..+ +-+-.+-|.||||.+--+
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~--KkVsVS~TP---------------GkTKHFQTi---~ls~~v~LCDCPGLVfPS 373 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGR--KKVSVSSTP---------------GKTKHFQTI---FLSPSVCLCDCPGLVFPS 373 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcC--ceeeeecCC---------------CCcceeEEE---EcCCCceecCCCCccccC
Confidence 679999999999999999999877 322212222 333322222 224578899999987555
Q ss_pred HHHHHHHHhcCeEE
Q 047363 89 SEVSTAARLSDGAL 102 (876)
Q Consensus 89 ~e~~~al~~aDgaI 102 (876)
....++..+++|++
T Consensus 374 f~~~r~emvl~GiL 387 (562)
T KOG1424|consen 374 FSPTRAEMVLNGIL 387 (562)
T ss_pred CCchHHHHHHhcCc
Confidence 55556777777743
No 424
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.06 E-value=0.02 Score=65.94 Aligned_cols=31 Identities=26% Similarity=0.292 Sum_probs=26.7
Q ss_pred CCCceEEEEEeCCCCcHHHHHHHHHHhhCCCCc
Q 047363 6 TRKIRNISILAHVDHGKTTLADHLIAATGGGLL 38 (876)
Q Consensus 6 ~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i 38 (876)
+..+++|+|+|+.|+|||||+++|... .|..
T Consensus 216 ~~~~~~IvI~G~~gsGKTTL~~~La~~--~g~~ 246 (399)
T PRK08099 216 PFFVRTVAILGGESSGKSTLVNKLANI--FNTT 246 (399)
T ss_pred hCCCcEEEEEcCCCCCHHHHHHHHHHH--hCCC
Confidence 456899999999999999999999987 5543
No 425
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=96.04 E-value=0.0098 Score=62.14 Aligned_cols=69 Identities=22% Similarity=0.217 Sum_probs=44.9
Q ss_pred CeEEEEEcCCCCccc------hHHHHHHHHhcCeEEEEEcCCCccc-cchH-------HHHHHhhhhcCCcEEEEecccc
Q 047363 73 DYAINLIDSPGHMDF------CSEVSTAARLSDGALVLVDAVEGVH-IQTH-------AVLRQSWIEKLTPCLVLNKIDR 138 (876)
Q Consensus 73 ~~~inlIDTPGh~dF------~~e~~~al~~aDgaIlVvDa~egv~-~~t~-------~~l~~~~~~~ip~ilviNKiD~ 138 (876)
...+.++|+||+++| ...+.+.++..|.-+++|.-.+... ..-. .-+........|.|=|+.|+|+
T Consensus 96 ~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~melphVNvlSK~Dl 175 (290)
T KOG1533|consen 96 TDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLHMELPHVNVLSKADL 175 (290)
T ss_pred cCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHHhhcccchhhhhHhHH
Confidence 357899999999887 3456777777776555554443321 1111 1123334567899999999999
Q ss_pred ccc
Q 047363 139 LIS 141 (876)
Q Consensus 139 ~~~ 141 (876)
...
T Consensus 176 ~~~ 178 (290)
T KOG1533|consen 176 LKK 178 (290)
T ss_pred HHh
Confidence 754
No 426
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=96.04 E-value=0.0038 Score=63.65 Aligned_cols=64 Identities=17% Similarity=0.127 Sum_probs=47.5
Q ss_pred eEEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcC---CcEEEEeccccc
Q 047363 74 YAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKL---TPCLVLNKIDRL 139 (876)
Q Consensus 74 ~~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~i---p~ilviNKiD~~ 139 (876)
|.+.|||||+..... +..++..+|.+|+++++..-....+..++..+...+. ...+|+||.+.-
T Consensus 95 yD~iiiD~~~~~~~~--~~~~l~~ad~viv~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~vv~N~v~~~ 161 (195)
T PF01656_consen 95 YDYIIIDTPPGLSDP--VRNALAAADYVIVPIEPDPSSIEGAERLIELLKRLGKKLKIIGVVINRVDPG 161 (195)
T ss_dssp SSEEEEEECSSSSHH--HHHHHHTSSEEEEEEESSHHHHHHHHHHHHHHHHHTHTEEEEEEEEEEETSC
T ss_pred ccceeecccccccHH--HHHHHHhCceeeeecCCcHHHHHHHHHHHHHHHHhccccceEEEEEeeeCCC
Confidence 899999999977644 7889999999999999875333344455555655553 335789999775
No 427
>PRK13695 putative NTPase; Provisional
Probab=95.99 E-value=0.023 Score=57.49 Aligned_cols=35 Identities=9% Similarity=0.075 Sum_probs=27.4
Q ss_pred EEEEc---CCCccccchHHHHHHhhhhcCCcEEEEecc
Q 047363 102 LVLVD---AVEGVHIQTHAVLRQSWIEKLTPCLVLNKI 136 (876)
Q Consensus 102 IlVvD---a~egv~~~t~~~l~~~~~~~ip~ilviNKi 136 (876)
++++| ..+....+....+..+.+.+.|+|+++||.
T Consensus 99 ~lllDE~~~~e~~~~~~~~~l~~~~~~~~~~i~v~h~~ 136 (174)
T PRK13695 99 VIIIDEIGKMELKSPKFVKAVEEVLDSEKPVIATLHRR 136 (174)
T ss_pred EEEEECCCcchhhhHHHHHHHHHHHhCCCeEEEEECch
Confidence 47899 556666666777788878899999999984
No 428
>cd04089 eRF3_II eRF3_II: domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-li
Probab=95.94 E-value=0.052 Score=48.07 Aligned_cols=51 Identities=24% Similarity=0.400 Sum_probs=40.6
Q ss_pred eEEEEEEEeCccCCCCEEEEeccccCCcchhhhccccceeEEeEEEEecCCceeecceeeCCCeEEEe
Q 047363 439 FLAFARIFSGVLYSGQRVFVLSALYDPLKVESMQKHIQEAELQSLYLMMGQGLKPVASAKAGNVVAIR 506 (876)
Q Consensus 439 ~iaf~RV~SGtL~~G~~v~vlg~~y~~~~~~~~~~~~~~~~I~~L~l~~G~~~~~v~~v~AGnIv~I~ 506 (876)
.+..+||.+|++++||+|+++... ...+|..|... ..++++|.||+.+++.
T Consensus 15 ~vv~G~v~~G~i~~G~~v~i~P~~-------------~~~~V~si~~~----~~~~~~a~aGd~v~l~ 65 (82)
T cd04089 15 TVVLGKVESGTIKKGDKLLVMPNK-------------TQVEVLSIYNE----DVEVRYARPGENVRLR 65 (82)
T ss_pred EEEEEEEeeeEEecCCEEEEeCCC-------------cEEEEEEEEEC----CEECCEECCCCEEEEE
Confidence 478999999999999999886421 23678887644 3679999999999985
No 429
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=95.93 E-value=0.0058 Score=62.79 Aligned_cols=67 Identities=18% Similarity=0.191 Sum_probs=43.4
Q ss_pred eEEEEEcCCCCccc------hHHHHHHHHhcC---eEEEEEcCCCccc-----cchHHHHHHhhhhcCCcEEEEeccccc
Q 047363 74 YAINLIDSPGHMDF------CSEVSTAARLSD---GALVLVDAVEGVH-----IQTHAVLRQSWIEKLTPCLVLNKIDRL 139 (876)
Q Consensus 74 ~~inlIDTPGh~dF------~~e~~~al~~aD---gaIlVvDa~egv~-----~~t~~~l~~~~~~~ip~ilviNKiD~~ 139 (876)
-.+.++|+||+++. .....+.+..-+ ++++++|+.=-+. ......+.......+|.|=|+.|||++
T Consensus 98 ddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~lE~P~INvlsKMDLl 177 (273)
T KOG1534|consen 98 DDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMISLEVPHINVLSKMDLL 177 (273)
T ss_pred CCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHHhcCcchhhhhHHHHh
Confidence 46889999997765 445555565533 6788888742110 111222334456789999999999998
Q ss_pred c
Q 047363 140 I 140 (876)
Q Consensus 140 ~ 140 (876)
.
T Consensus 178 k 178 (273)
T KOG1534|consen 178 K 178 (273)
T ss_pred h
Confidence 5
No 430
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=95.88 E-value=0.021 Score=62.67 Aligned_cols=82 Identities=21% Similarity=0.308 Sum_probs=54.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEc-----------------
Q 047363 10 RNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYK----------------- 72 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~----------------- 72 (876)
..|+|+|-+++||||+.++|.... .+ ++.+-+. ||..+...+...
T Consensus 21 lkiGIVGlPNvGKST~fnalT~~~-a~------~~NfPF~-----------TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~v 82 (391)
T KOG1491|consen 21 LKIGIVGLPNVGKSTFFNALTKSK-AG------AANFPFC-----------TIDPNEARVEVPDSRFDLLCPIYGPKSKV 82 (391)
T ss_pred ceeeEeeCCCCchHHHHHHHhcCC-CC------ccCCCcc-----------eeccccceeecCchHHHHHHHhcCCccee
Confidence 479999999999999999998651 11 1121111 111111111110
Q ss_pred CeEEEEEcCCCCcc-------chHHHHHHHHhcCeEEEEEcCCC
Q 047363 73 DYAINLIDSPGHMD-------FCSEVSTAARLSDGALVLVDAVE 109 (876)
Q Consensus 73 ~~~inlIDTPGh~d-------F~~e~~~al~~aDgaIlVvDa~e 109 (876)
.-.+++.|++|.+. +......-+|.+|+++-||++.+
T Consensus 83 pa~l~v~DIAGLvkGAs~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 83 PAFLTVYDIAGLVKGASAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred eeeEEEEeecccccCcccCcCchHHHHHhhhhccceeEEEEecC
Confidence 24689999999765 34457788999999999999864
No 431
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.88 E-value=0.012 Score=61.42 Aligned_cols=129 Identities=16% Similarity=0.244 Sum_probs=78.1
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccchH
Q 047363 10 RNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFCS 89 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~~ 89 (876)
+.|.+.|+--+||||+..-..+. .+ ...+-++.+ ...+|...-.-++ ..+.+||-||+.+|.+
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhk-----Ms---PneTlflES-----Tski~~d~is~sf----inf~v~dfPGQ~~~Fd 90 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHK-----MS---PNETLFLES-----TSKITRDHISNSF----INFQVWDFPGQMDFFD 90 (347)
T ss_pred ceEEEEeecccCcchhhheeeec-----cC---CCceeEeec-----cCcccHhhhhhhh----cceEEeecCCccccCC
Confidence 34999999999999987765544 11 112222222 1122211100011 4678999999999844
Q ss_pred ---HHHHHHHhcCeEEEEEcCCCccccchHH-HHHHhhhh----cCCcEEEEecccccccccccChH-HHHHHHH
Q 047363 90 ---EVSTAARLSDGALVLVDAVEGVHIQTHA-VLRQSWIE----KLTPCLVLNKIDRLISELKLTPL-EAYNRLL 155 (876)
Q Consensus 90 ---e~~~al~~aDgaIlVvDa~egv~~~t~~-~l~~~~~~----~ip~ilviNKiD~~~~e~~~~~~-~~~~~l~ 155 (876)
....-.+.+.+.|+|+|+.+.......+ ....++.. ++.+=+++-|.|-+..+++.... +++++-+
T Consensus 91 ~s~D~e~iF~~~gALifvIDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~ 165 (347)
T KOG3887|consen 91 PSFDYEMIFRGVGALIFVIDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTN 165 (347)
T ss_pred CccCHHHHHhccCeEEEEEechHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhh
Confidence 4667788889999999998765433322 22223322 34556799999999888775332 4444443
No 432
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=95.87 E-value=0.071 Score=56.69 Aligned_cols=64 Identities=22% Similarity=0.226 Sum_probs=41.9
Q ss_pred eEEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhh---hcCCcEEEEeccccc
Q 047363 74 YAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWI---EKLTPCLVLNKIDRL 139 (876)
Q Consensus 74 ~~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~---~~ip~ilviNKiD~~ 139 (876)
+.+.+||||+. +......++..||.+|+++.+..-........+....+ ...+.-+|+|+.|..
T Consensus 115 ~D~viiD~pp~--~~~~~~~~l~~ad~vii~~~~~~~s~~~~~~~~~~l~~~~~~~~~~~iv~n~~~~~ 181 (246)
T TIGR03371 115 RDWVLIDVPRG--PSPITRQALAAADLVLVVVNADAACYATLHQQALALFAGSGPRIGPHFLINQFDPA 181 (246)
T ss_pred CCEEEEECCCC--chHHHHHHHHhCCeEEEEeCCCHHHHHHHHHHHHHHhhcccccccceEEeeccCcc
Confidence 47999999995 34567889999999999998753211122212222221 234566899999864
No 433
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=95.83 E-value=0.024 Score=59.29 Aligned_cols=68 Identities=10% Similarity=0.007 Sum_probs=40.5
Q ss_pred EcCeEEEEEcCCCCccchHHHHHH--HHhcCeEEEEEcCCCccccchHHHHHHhhhh----cCCc-EEEEeccccc
Q 047363 71 YKDYAINLIDSPGHMDFCSEVSTA--ARLSDGALVLVDAVEGVHIQTHAVLRQSWIE----KLTP-CLVLNKIDRL 139 (876)
Q Consensus 71 ~~~~~inlIDTPGh~dF~~e~~~a--l~~aDgaIlVvDa~egv~~~t~~~l~~~~~~----~ip~-ilviNKiD~~ 139 (876)
...|.+.||||||......- ... ++.||.+|+|++...--......+++.+.+. +++. .+++||.+..
T Consensus 114 ~~~yD~ilID~~g~~~~~~~-~~~l~~~~ad~vliv~~p~~~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~~ 188 (212)
T cd02117 114 EDDLDVVLYDVLGDVVCGGF-AMPIREGKADEIYIVTSGEFMALYAANNICKGIRKYAKSGGVRLGGLICNSRNTD 188 (212)
T ss_pred ccCCCEEEEecCCCceeccc-ccccccccCcEEEEEecccHHHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCCc
Confidence 34689999999986632221 112 3489999999987532222233344444332 4443 3789999853
No 434
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=95.79 E-value=0.01 Score=59.88 Aligned_cols=57 Identities=23% Similarity=0.230 Sum_probs=44.1
Q ss_pred CCCCcc-chHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEeccccc
Q 047363 81 SPGHMD-FCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRL 139 (876)
Q Consensus 81 TPGh~d-F~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~ 139 (876)
-|||.. -..++..++..+|.+++|+|+.++.......++... .+.|+++|+||+|+.
T Consensus 2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~--~~k~~ilVlNK~Dl~ 59 (171)
T cd01856 2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKIL--GNKPRIIVLNKADLA 59 (171)
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHh--cCCCEEEEEehhhcC
Confidence 477764 467889999999999999999877665555454433 357999999999985
No 435
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=95.72 E-value=0.047 Score=59.19 Aligned_cols=65 Identities=18% Similarity=0.244 Sum_probs=41.7
Q ss_pred CeEEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhh----hhcCCcE-EEEecccc
Q 047363 73 DYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSW----IEKLTPC-LVLNKIDR 138 (876)
Q Consensus 73 ~~~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~----~~~ip~i-lviNKiD~ 138 (876)
.|.+.||||||..... .+..++..||.+|+++.+..........+++.+. ..+++.+ +|+|+.|.
T Consensus 115 ~yD~vIIDt~g~~~~~-~~~~al~~aD~vlip~~p~~~~l~~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~ 184 (267)
T cd02032 115 EYDVILFDVLGDVVCG-GFAAPLNYADYALIVTDNDFDSIFAANRIAAAVREKAKTYKVRLAGLIANRTDK 184 (267)
T ss_pred cCCEEEEeCCCCcccc-cchhhhhhcCEEEEEecCCcccHHHHHHHHHHHHHHhhccCCceEEEEEeCCCH
Confidence 5889999999865422 3455699999999999885332222333333222 2345544 68899984
No 436
>PRK10818 cell division inhibitor MinD; Provisional
Probab=95.69 E-value=0.054 Score=58.73 Aligned_cols=65 Identities=15% Similarity=0.220 Sum_probs=46.2
Q ss_pred CeEEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhh---------cCCcEEEEeccccc
Q 047363 73 DYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIE---------KLTPCLVLNKIDRL 139 (876)
Q Consensus 73 ~~~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~---------~ip~ilviNKiD~~ 139 (876)
.|.+.|||||+... .....++..+|.+|+|+++.......+..+++.+... +++..+++|++|..
T Consensus 113 ~yd~viiD~p~~~~--~~~~~~l~~ad~vivv~~p~~~sl~~~~~~l~~i~~~~~~~~~~~~~~~~~vv~n~~~~~ 186 (270)
T PRK10818 113 DFEFIVCDSPAGIE--TGALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNPG 186 (270)
T ss_pred CCCEEEEeCCCCcc--HHHHHHHHhCCeEEEEcCCCchHHHhHHHHHHHHHHhhccccccccccceEEEEeccCHh
Confidence 58999999998775 4567789999999999998754444455555554311 23346788999864
No 437
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=95.57 E-value=0.11 Score=58.10 Aligned_cols=63 Identities=19% Similarity=0.092 Sum_probs=45.6
Q ss_pred CeEEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEeccc
Q 047363 73 DYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKID 137 (876)
Q Consensus 73 ~~~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD 137 (876)
.|.+.|||||+..+ ..+..++..||.+|+|++..-.......++++.+...+...-+++|...
T Consensus 204 ~~D~VIID~p~~~~--~~~~~~L~~AD~vliV~~~~~~sl~~a~r~l~~l~~~~~~~~lVv~~~~ 266 (322)
T TIGR03815 204 GGDLVVVDLPRRLT--PAAETALESADLVLVVVPADVRAVAAAARVCPELGRRNPDLRLVVRGPA 266 (322)
T ss_pred cCCEEEEeCCCCCC--HHHHHHHHHCCEEEEEcCCcHHHHHHHHHHHHHHhhhCCCeEEEEeCCC
Confidence 58899999999865 4578899999999999987644344455566666555545556777644
No 438
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.56 E-value=0.044 Score=55.66 Aligned_cols=26 Identities=42% Similarity=0.450 Sum_probs=23.2
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHh
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
.+.+.++|+|..|+|||||+++|+..
T Consensus 4 ~~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 4 TMIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CCceEEEEECCCCChHHHHHHHHHHH
Confidence 35678999999999999999999876
No 439
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=95.53 E-value=0.014 Score=63.78 Aligned_cols=57 Identities=25% Similarity=0.265 Sum_probs=45.5
Q ss_pred CCCCcc-chHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEeccccc
Q 047363 81 SPGHMD-FCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRL 139 (876)
Q Consensus 81 TPGh~d-F~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~ 139 (876)
-|||.. ...++..++..+|.+|+|+|+.++.......+.+.+ .+.|+++|+||+|+.
T Consensus 4 fpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l--~~kp~IiVlNK~DL~ 61 (276)
T TIGR03596 4 FPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIR--GNKPRLIVLNKADLA 61 (276)
T ss_pred ChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHH--CCCCEEEEEEccccC
Confidence 388875 467899999999999999999877666555555544 368999999999985
No 440
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=95.51 E-value=0.037 Score=59.49 Aligned_cols=48 Identities=25% Similarity=0.256 Sum_probs=35.9
Q ss_pred HHHHhcCeEEEEEcCCCcc-ccc-hHHHHHHhhhhcCCcEEEEecccccc
Q 047363 93 TAARLSDGALVLVDAVEGV-HIQ-THAVLRQSWIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 93 ~al~~aDgaIlVvDa~egv-~~~-t~~~l~~~~~~~ip~ilviNKiD~~~ 140 (876)
..++.+|++++|+|+.+.. ... ....+..+...++|+++|+||+|+..
T Consensus 32 ~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~i~~vIV~NK~DL~~ 81 (245)
T TIGR00157 32 PIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEAQNIEPIIVLNKIDLLD 81 (245)
T ss_pred cccccCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECcccCC
Confidence 4688999999999998644 332 23344455567899999999999963
No 441
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=95.45 E-value=0.04 Score=59.74 Aligned_cols=64 Identities=16% Similarity=0.155 Sum_probs=40.4
Q ss_pred CeEEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHh----hhhcCCcE-EEEeccc
Q 047363 73 DYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQS----WIEKLTPC-LVLNKID 137 (876)
Q Consensus 73 ~~~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~----~~~~ip~i-lviNKiD 137 (876)
+|.+.||||||..... .+..++..||.+|+++.+..........+++.+ ...+++.. +++|+.+
T Consensus 117 ~yD~viIDt~g~~~~~-~~~~~l~~AD~viip~~~~~~sl~~~~~~~~~i~~~~~~~~l~i~giv~N~~~ 185 (270)
T PRK13185 117 DYDVILFDVLGDVVCG-GFAAPLQYADYALIVTANDFDSIFAANRIAAAIQAKAKNYKVRLAGVIANRSA 185 (270)
T ss_pred cCCEEEEecCCCcccC-cccchhhhCcEEEEEecCchhhHHHHHHHHHHHHhhhhccCCCceEEEEeccC
Confidence 5899999999865322 245568899999999977432222223333322 23455654 7889976
No 442
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=95.42 E-value=0.02 Score=74.52 Aligned_cols=116 Identities=21% Similarity=0.261 Sum_probs=60.8
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccc-
Q 047363 9 IRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDF- 87 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF- 87 (876)
.+=..|+|++|+||||++.+- |.-.+ +.+....+..+|+.- ...+.+-+ ...-.+|||+|..-.
T Consensus 111 LPWYlviG~~gsGKtt~l~~s------gl~~p-------l~~~~~~~~~~~~~~-t~~c~wwf-~~~avliDtaG~y~~~ 175 (1169)
T TIGR03348 111 LPWYLVIGPPGSGKTTLLQNS------GLKFP-------LAERLGAAALRGVGG-TRNCDWWF-TDEAVLIDTAGRYTTQ 175 (1169)
T ss_pred CCCEEEECCCCCchhHHHHhC------CCCCc-------CchhhccccccCCCC-CcccceEe-cCCEEEEcCCCccccC
Confidence 344789999999999998754 11110 011000111112110 00112212 245669999994311
Q ss_pred -------hHHHHH---HH------HhcCeEEEEEcCCCccccchH------HHHH-------HhhhhcCCcEEEEecccc
Q 047363 88 -------CSEVST---AA------RLSDGALVLVDAVEGVHIQTH------AVLR-------QSWIEKLTPCLVLNKIDR 138 (876)
Q Consensus 88 -------~~e~~~---al------~~aDgaIlVvDa~egv~~~t~------~~l~-------~~~~~~ip~ilviNKiD~ 138 (876)
..+... .+ +-.+|+|++||+.+=.....+ ..++ .....++|+-++++|+|+
T Consensus 176 ~~~~~~~~~~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dl 255 (1169)
T TIGR03348 176 DSDPEEDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADL 255 (1169)
T ss_pred CCcccccHHHHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchh
Confidence 112222 22 346999999999753321111 1111 122347899999999998
Q ss_pred c
Q 047363 139 L 139 (876)
Q Consensus 139 ~ 139 (876)
+
T Consensus 256 l 256 (1169)
T TIGR03348 256 L 256 (1169)
T ss_pred h
Confidence 7
No 443
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=95.36 E-value=0.04 Score=59.56 Aligned_cols=37 Identities=8% Similarity=0.058 Sum_probs=25.2
Q ss_pred CeEEEEEcCCCCccchHH-HHHHHHhcCeEEEEEcCCC
Q 047363 73 DYAINLIDSPGHMDFCSE-VSTAARLSDGALVLVDAVE 109 (876)
Q Consensus 73 ~~~inlIDTPGh~dF~~e-~~~al~~aDgaIlVvDa~e 109 (876)
.|.+.||||||+.....- ...++..||.+|+++.+..
T Consensus 116 ~yD~viID~~g~~~~~~~~~~~~~~aaD~vlip~~p~~ 153 (270)
T cd02040 116 DLDFVIYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEM 153 (270)
T ss_pred CCCEEEEecccCcccCCcccccccccccEEEEEecCch
Confidence 689999999986532111 1123447999999998853
No 444
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=95.20 E-value=0.059 Score=58.67 Aligned_cols=67 Identities=6% Similarity=-0.033 Sum_probs=39.0
Q ss_pred EcCeEEEEEcCCCCccch-HHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhh---hcCCcE-EEEeccc
Q 047363 71 YKDYAINLIDSPGHMDFC-SEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWI---EKLTPC-LVLNKID 137 (876)
Q Consensus 71 ~~~~~inlIDTPGh~dF~-~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~---~~ip~i-lviNKiD 137 (876)
+.+|.+.||||||..-.. .-...++..||.+|+|+....-.......+++.+.. .++++. +++|+.+
T Consensus 114 ~~~yD~vlID~~~~~~~~~~~~~~al~aad~vlip~~p~~~sl~~~~~~~k~l~~~~~~~l~~~GiV~n~~~ 185 (273)
T PRK13232 114 TDDLDYVFYDVLGDVVCGGFAMPIREGKAKEIYIVASGELMAIYAANNICKGLAKFAKGGARLGGIICNSRN 185 (273)
T ss_pred cccCCEEEEecCCCeeECCEeccccccccceEEEecCchHHHHHHHHHHHHHHHHHhCCCCceeEEEEeCCC
Confidence 346899999999865211 111223458899999998743222222234444432 355564 7788764
No 445
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=95.16 E-value=0.12 Score=54.80 Aligned_cols=64 Identities=13% Similarity=0.098 Sum_probs=42.5
Q ss_pred CeEEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCccccchHH---HHHHh---hhhcCCcEEEEecccc
Q 047363 73 DYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHA---VLRQS---WIEKLTPCLVLNKIDR 138 (876)
Q Consensus 73 ~~~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~---~l~~~---~~~~ip~ilviNKiD~ 138 (876)
++.+.||||+|-... .+..++..+|.+|+-+-.+.-.-.+... .++.. ....+|.-+++|++.-
T Consensus 83 ~~d~VlvDleG~as~--~~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl~Tr~~~ 152 (231)
T PF07015_consen 83 GFDFVLVDLEGGASE--LNDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAVLFTRVPA 152 (231)
T ss_pred CCCEEEEeCCCCCch--hHHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeEEEecCCc
Confidence 478999999996653 3667777899988876655333222222 22222 2456899999999963
No 446
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=95.15 E-value=0.043 Score=51.18 Aligned_cols=22 Identities=9% Similarity=0.151 Sum_probs=19.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHHh
Q 047363 11 NISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
.|+++|..|+|||+|+.++...
T Consensus 2 kvv~~G~~gvGKt~l~~~~~~~ 23 (124)
T smart00010 2 KVVGIGDSGVGKVGKSARFVQF 23 (124)
T ss_pred EEEEECCCChhHHHHHHHHhcC
Confidence 5899999999999999998543
No 447
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=95.13 E-value=0.018 Score=59.05 Aligned_cols=57 Identities=19% Similarity=0.018 Sum_probs=42.0
Q ss_pred CCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccc
Q 047363 82 PGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 82 PGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~ 140 (876)
|.+..|...+..+++.+|++|+|+|+.+........++. ...+.|+++|+||+|+..
T Consensus 19 ~~~~~~~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l~~--~~~~~~~ilV~NK~Dl~~ 75 (190)
T cd01855 19 PDEDFILNLLSSISPKKALVVHVVDIFDFPGSLIPRLRL--FGGNNPVILVGNKIDLLP 75 (190)
T ss_pred ChHHHHHHHHHhcccCCcEEEEEEECccCCCccchhHHH--hcCCCcEEEEEEchhcCC
Confidence 333347888889999999999999998755433344422 235789999999999964
No 448
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=95.09 E-value=0.039 Score=60.30 Aligned_cols=37 Identities=11% Similarity=0.135 Sum_probs=26.0
Q ss_pred CeEEEEEcCCCCccchH-HHHHHHHhcCeEEEEEcCCC
Q 047363 73 DYAINLIDSPGHMDFCS-EVSTAARLSDGALVLVDAVE 109 (876)
Q Consensus 73 ~~~inlIDTPGh~dF~~-e~~~al~~aDgaIlVvDa~e 109 (876)
+|.+.||||||..-... .+..++..||.+|+++.+..
T Consensus 116 ~yD~viID~~~~~~~~~l~~~~~~~aAD~vlIp~~p~~ 153 (279)
T PRK13230 116 GPDVVIYDILGDVVCGGFAMPLQKGLADDVYIVTTCDP 153 (279)
T ss_pred CCCEEEEecCCccccCCccccccccccceEEEeccchH
Confidence 68999999998542111 12335567999999999864
No 449
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=95.07 E-value=0.023 Score=57.78 Aligned_cols=42 Identities=29% Similarity=0.194 Sum_probs=34.4
Q ss_pred CeEEEEEcCCCccccchHHHHHH--hhhhcCCcEEEEecccccc
Q 047363 99 DGALVLVDAVEGVHIQTHAVLRQ--SWIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 99 DgaIlVvDa~egv~~~t~~~l~~--~~~~~ip~ilviNKiD~~~ 140 (876)
|.+++|+|+..........+.+. ....+.|+|+|+||+|+..
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~~ 44 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLVP 44 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcCC
Confidence 78999999998877777777666 3445789999999999964
No 450
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=95.05 E-value=0.076 Score=58.53 Aligned_cols=64 Identities=17% Similarity=0.207 Sum_probs=40.4
Q ss_pred CeEEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhh----hcCCcE-EEEeccc
Q 047363 73 DYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWI----EKLTPC-LVLNKID 137 (876)
Q Consensus 73 ~~~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~----~~ip~i-lviNKiD 137 (876)
+|.+.||||||.... .....++..||.+|+++++..-.......+++.+.. .+++.. +++|+.|
T Consensus 115 ~yD~IiIDt~~~l~~-~a~~aal~~AD~viIp~~p~~~sl~~~~~l~~~i~~~~~~~~l~~~gvv~n~~~ 183 (290)
T CHL00072 115 EYDIILFDVLGDVVC-GGFAAPLNYADYCIIITDNGFDALFAANRIAASVREKARTHPLRLAGLVGNRTS 183 (290)
T ss_pred cCCEEEEecCCccee-chhhhhhhcCCEEEEEecCCHHHHHHHHHHHHHHHHHhccCCCceEEEEEeCCC
Confidence 588999999986432 234466888999999998754322333334433322 234443 7889987
No 451
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=94.99 E-value=0.022 Score=62.72 Aligned_cols=57 Identities=25% Similarity=0.246 Sum_probs=45.3
Q ss_pred CCCCccc-hHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEeccccc
Q 047363 81 SPGHMDF-CSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRL 139 (876)
Q Consensus 81 TPGh~dF-~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~ 139 (876)
-|||..= ..++..++..+|.+|+|+|+.++.......+..... +.|+++|+||+|+.
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~--~kp~iiVlNK~DL~ 64 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIG--NKPRLLILNKSDLA 64 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhC--CCCEEEEEEchhcC
Confidence 5888754 567899999999999999998877666555544332 78999999999985
No 452
>PRK10037 cell division protein; Provisional
Probab=94.95 E-value=0.15 Score=54.80 Aligned_cols=58 Identities=17% Similarity=0.232 Sum_probs=41.0
Q ss_pred cCeEEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhh-cCCcEEEEeccc
Q 047363 72 KDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIE-KLTPCLVLNKID 137 (876)
Q Consensus 72 ~~~~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~-~ip~ilviNKiD 137 (876)
..|.+.|||||+..+ ..+..++..||.+|+++.+.. ...++...+. +....+++|+.+
T Consensus 116 ~~yD~iiIDtpp~~~--~~~~~al~aaD~vlvpv~~~~------~~~i~~~~~~~~~~~~i~~n~~~ 174 (250)
T PRK10037 116 GRYQWILLDLPRGAS--PLTRQLLSLCDHSLAIVNVDA------NCHIRLHQQALPAGAHILINDLR 174 (250)
T ss_pred CCCCEEEEECCCCcc--HHHHHHHHhCCEEEEEcCcCH------HHHHhhhccccCCCeEEEEecCC
Confidence 468999999999865 568899999999999998742 1223333322 334556788875
No 453
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.94 E-value=0.097 Score=59.69 Aligned_cols=64 Identities=23% Similarity=0.370 Sum_probs=39.5
Q ss_pred CeEEEEEcCCCCccchHHHHHHH------HhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcE-EEEeccccc
Q 047363 73 DYAINLIDSPGHMDFCSEVSTAA------RLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPC-LVLNKIDRL 139 (876)
Q Consensus 73 ~~~inlIDTPGh~dF~~e~~~al------~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~i-lviNKiD~~ 139 (876)
.+.+.|+||.|......+...-+ -.-|=+++|+|+.-|-. ..-...+-.+.+++- ++++|+|-.
T Consensus 182 ~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQd---A~~~A~aF~e~l~itGvIlTKlDGd 252 (451)
T COG0541 182 GYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQD---AVNTAKAFNEALGITGVILTKLDGD 252 (451)
T ss_pred CCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchH---HHHHHHHHhhhcCCceEEEEcccCC
Confidence 47899999999655433322222 22377899999986642 222222233455654 789999975
No 454
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=94.93 E-value=0.099 Score=55.93 Aligned_cols=61 Identities=21% Similarity=0.234 Sum_probs=41.8
Q ss_pred CeEEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccc
Q 047363 73 DYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 73 ~~~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~ 140 (876)
.+.+.|+|||-.. ...+..++..+|.+++|+-+..... ..+-++.. .-..-+++|+.|-..
T Consensus 117 ~~~~iliD~P~g~--~~~~~~al~~aD~vL~V~~~Da~s~---~~L~q~~l--~~~~~~liNq~~~~s 177 (243)
T PF06564_consen 117 PYDWILIDTPPGP--SPYTRQALAAADLVLVVVNPDAASH---ARLHQRAL--PAGHRFLINQYDPAS 177 (243)
T ss_pred CCCEEEEeCCCCC--cHHHHHHHHhCCeEEEEeCCCHHHH---HHHHHhcc--cCCcEEEEeccCccc
Confidence 4789999999854 4677889999999999987753321 11112222 224578999999763
No 455
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=94.72 E-value=0.033 Score=55.20 Aligned_cols=42 Identities=24% Similarity=0.134 Sum_probs=33.4
Q ss_pred CeEEEEEcCCCccccchHHHH-HHhhhhcCCcEEEEecccccc
Q 047363 99 DGALVLVDAVEGVHIQTHAVL-RQSWIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 99 DgaIlVvDa~egv~~~t~~~l-~~~~~~~ip~ilviNKiD~~~ 140 (876)
|.+|+|+|+.++.......+. ..+...++|+++|+||+|+..
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~~~~p~IiVlNK~Dl~~ 43 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKEKGKKLILVLNKADLVP 43 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhcCCCCEEEEEechhcCC
Confidence 789999999887766665555 355667899999999999853
No 456
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=94.63 E-value=0.065 Score=58.53 Aligned_cols=24 Identities=33% Similarity=0.531 Sum_probs=21.9
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHh
Q 047363 9 IRNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
++.|+|+|..|+|||||+..|+..
T Consensus 1 M~~i~i~G~~gSGKTTLi~~Li~~ 24 (274)
T PRK14493 1 MKVLSIVGYKATGKTTLVERLVDR 24 (274)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999999886
No 457
>cd03697 EFTU_II EFTU_II: Elongation factor Tu domain II. Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the catalytic or G-domain. The G-domain is composed of about 200 amino acid residues, arranged into a predominantly parallel six-stranded beta-sheet core surrounded by seven a-helices. Non-catalytic domains II and III are beta-barrels of seven and six, respectively, antiparallel beta-strands that share an extended interface. Either non-catalytic domain is composed of about 100 amino acid residues. EF-Tu proteins exist in two principal conformations: in a compact one, EF-Tu*GTP, with tight interfaces between all three domains and a high affinity for aminoacyl-tRNA, and in an open one, EF-Tu*GDP, with essentially no G-domain-domain II interactions and a low affinity for aminoacyl-tRNA. EF-Tu has approximately a 100-fold higher
Probab=94.58 E-value=0.22 Score=44.63 Aligned_cols=53 Identities=19% Similarity=0.248 Sum_probs=40.9
Q ss_pred eEEEEEEEeCccCCCCEEEEeccccCCcchhhhccccceeEEeEEEEecCCceeecceeeCCCeEEEe
Q 047363 439 FLAFARIFSGVLYSGQRVFVLSALYDPLKVESMQKHIQEAELQSLYLMMGQGLKPVASAKAGNVVAIR 506 (876)
Q Consensus 439 ~iaf~RV~SGtL~~G~~v~vlg~~y~~~~~~~~~~~~~~~~I~~L~l~~G~~~~~v~~v~AGnIv~I~ 506 (876)
.+..+||.+|++++||+|.++++..+ .+.+|..|... ..++++|.||+-+++.
T Consensus 16 ~vv~G~v~~G~v~~gd~v~~~p~~~~-----------~~~~V~si~~~----~~~~~~a~~G~~v~l~ 68 (87)
T cd03697 16 TVVTGRIERGTIKVGDEVEIVGFGET-----------LKTTVTGIEMF----RKTLDEAEAGDNVGVL 68 (87)
T ss_pred EEEEEEECCCCCccCCEEEEeCCCCC-----------ceEEEEEEEEC----CcCCCEECCCCEEEEE
Confidence 47899999999999999998753210 23677777643 4578999999999985
No 458
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=94.54 E-value=0.14 Score=55.42 Aligned_cols=66 Identities=18% Similarity=0.158 Sum_probs=40.0
Q ss_pred CeEEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhh----hhcCCc-EEEEeccccc
Q 047363 73 DYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSW----IEKLTP-CLVLNKIDRL 139 (876)
Q Consensus 73 ~~~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~----~~~ip~-ilviNKiD~~ 139 (876)
.|.+.||||||...-. .+..++..||.+|+++...-.....+..+++.+. ..+++. .+|+|+.|..
T Consensus 115 ~yD~ViID~~~~~~~~-~~~~~l~aAD~vlip~~~~~~sl~~~~~l~~~i~~~~~~~~l~~~gIV~N~~~~~ 185 (268)
T TIGR01281 115 DYDVILFDVLGDVVCG-GFATPLQYADYALVVAANDFDALFAANRIAASVQEKAKNYDVRLAGIIGNRSDAT 185 (268)
T ss_pred cCCEEEEecCCccccC-ccccchhhcCEEEEEecCchhHHHHHHHHHHHHHHHhhcCCCceEEEEEeCCChH
Confidence 5899999999864311 2234688999999998764222222233333322 234554 3688998753
No 459
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=94.42 E-value=0.32 Score=50.74 Aligned_cols=57 Identities=26% Similarity=0.295 Sum_probs=39.4
Q ss_pred EEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcE-EEEe
Q 047363 75 AINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPC-LVLN 134 (876)
Q Consensus 75 ~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~i-lviN 134 (876)
.+.|||||.-.+. ......++.+|.+|+|+.+...........+..++ +.+++ +|+|
T Consensus 150 D~IiiD~pp~~~~-~~~~~l~~~aD~viiV~~~~~~~~~~~~~~~~~l~--~~~~~G~v~N 207 (207)
T TIGR03018 150 RIIIIDTPPLLVF-SEARALARLVGQIVLVVEEGRTTQEAVKEALSALE--SCKVLGVVLN 207 (207)
T ss_pred CEEEEECCCCcch-hHHHHHHHhCCEEEEEEECCCCCHHHHHHHHHHhc--CCCeEEEEeC
Confidence 7999999987653 34445567899999999987655555566666665 45555 3444
No 460
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=94.33 E-value=0.091 Score=54.47 Aligned_cols=67 Identities=22% Similarity=0.215 Sum_probs=50.6
Q ss_pred CeEEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcE-EEEecccccc
Q 047363 73 DYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPC-LVLNKIDRLI 140 (876)
Q Consensus 73 ~~~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~i-lviNKiD~~~ 140 (876)
.|.+.|||||.... ..+.....+.+|++|+|+++............+.+.+.+.+++ +|+||.|...
T Consensus 127 ~yD~ViiD~pp~~~-~~~~~~~~~~~D~vilV~~~~~~~~~~~~~~~~~l~~~~~~~~gvVlN~~~~~~ 194 (204)
T TIGR01007 127 YFDYIIIDTPPIGT-VTDAAIIARACDASILVTDAGEIKKRDVQKAKEQLEQTGSNFLGVVLNKVDISV 194 (204)
T ss_pred cCCEEEEeCCCccc-cchHHHHHHhCCeEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEEeCccccc
Confidence 58899999998322 2344445677999999999976666666777777888888865 6899998764
No 461
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=94.29 E-value=0.1 Score=59.35 Aligned_cols=54 Identities=22% Similarity=0.073 Sum_probs=39.7
Q ss_pred ccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccc
Q 047363 85 MDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 85 ~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~ 140 (876)
.+|...+....+.+|++++|+|+.+........+.+.+ .+.|+++|+||+|++.
T Consensus 51 e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~--~~~piilV~NK~DLl~ 104 (360)
T TIGR03597 51 DDFLNLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFV--GGNPVLLVGNKIDLLP 104 (360)
T ss_pred HHHHHHHhhcccCCcEEEEEEECcCCCCCccHHHHHHh--CCCCEEEEEEchhhCC
Confidence 46776666667888999999999776544444444433 2679999999999974
No 462
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=94.29 E-value=0.0045 Score=62.27 Aligned_cols=116 Identities=15% Similarity=0.217 Sum_probs=80.0
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcC---eEEEEEcCCC
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKD---YAINLIDSPG 83 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~---~~inlIDTPG 83 (876)
+..-.+-|+|..++|||+++.+.+++...... .. .-|.....+ .+.|++ .++.|||..|
T Consensus 23 ~hL~k~lVig~~~vgkts~i~ryv~~nfs~~y--------------RA--tIgvdfalk--Vl~wdd~t~vRlqLwdIag 84 (229)
T KOG4423|consen 23 EHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHY--------------RA--TIGVDFALK--VLQWDDKTIVRLQLWDIAG 84 (229)
T ss_pred hhhhhhheeeeccccchhHHHHHHHHHHHHHH--------------HH--HHhHHHHHH--HhccChHHHHHHHHhcchh
Confidence 44567889999999999999999887111000 00 001111111 122332 4578999999
Q ss_pred CccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhh--------hcCCcEEEEecccccc
Q 047363 84 HMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWI--------EKLTPCLVLNKIDRLI 140 (876)
Q Consensus 84 h~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~--------~~ip~ilviNKiD~~~ 140 (876)
+..|...+....+.+.|+.+|+|.+.........-|++-.. .-+|+|+..||+|...
T Consensus 85 Qerfg~mtrVyykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~ 149 (229)
T KOG4423|consen 85 QERFGNMTRVYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEK 149 (229)
T ss_pred hhhhcceEEEEecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccCh
Confidence 99999999999999999999999987776665556665432 2357788899999874
No 463
>PRK01889 GTPase RsgA; Reviewed
Probab=94.23 E-value=0.058 Score=61.25 Aligned_cols=65 Identities=26% Similarity=0.387 Sum_probs=0.0
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccc
Q 047363 10 RNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDF 87 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF 87 (876)
..++++|.+|+|||||++.|++. .....|.+...+... +..|.......+....+ ++||||..+|
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~------~~~~~G~i~~~~~~g----~~tt~~~~l~~l~~~~~---l~DtpG~~~~ 260 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGE------EVQKTGAVREDDSKG----RHTTTHRELHPLPSGGL---LIDTPGMREL 260 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHh------cccceeeEEECCCCC----cchhhhccEEEecCCCe---ecCCCchhhh
No 464
>cd03696 selB_II selB_II: this subfamily represents the domain of elongation factor SelB, homologous to domain II of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=94.14 E-value=0.32 Score=43.02 Aligned_cols=51 Identities=29% Similarity=0.392 Sum_probs=40.3
Q ss_pred eEEEEEEEeCccCCCCEEEEeccccCCcchhhhccccceeEEeEEEEecCCceeecceeeCCCeEEEe
Q 047363 439 FLAFARIFSGVLYSGQRVFVLSALYDPLKVESMQKHIQEAELQSLYLMMGQGLKPVASAKAGNVVAIR 506 (876)
Q Consensus 439 ~iaf~RV~SGtL~~G~~v~vlg~~y~~~~~~~~~~~~~~~~I~~L~l~~G~~~~~v~~v~AGnIv~I~ 506 (876)
.+..+||-||++++||+|.++..+ ...+|.++... ..++++|.||+-+++.
T Consensus 16 ~vv~G~v~sG~i~~g~~v~~~p~~-------------~~~~V~sI~~~----~~~~~~a~aGd~v~i~ 66 (83)
T cd03696 16 TVVTGTVLSGSVKVGDKVEILPLG-------------EETRVRSIQVH----GKDVEEAKAGDRVALN 66 (83)
T ss_pred EEEEEEEeecEEeCCCEEEECCCC-------------ceEEEEEEEEC----CcCcCEEcCCCEEEEE
Confidence 478999999999999999876421 23678887643 4668999999999985
No 465
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.04 E-value=0.61 Score=46.66 Aligned_cols=120 Identities=14% Similarity=0.190 Sum_probs=60.5
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhhC-CCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEc-CeEE----------
Q 047363 9 IRNISILAHVDHGKTTLADHLIAATG-GGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYK-DYAI---------- 76 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~t~-~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~-~~~i---------- 76 (876)
..+|.|.|++|+|||||+..+..... .|. . .|.+....-+...+.-|.++ +.+..+ ...+
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~-k---vgGf~t~EVR~gGkR~GF~I----vdl~tg~~~~la~~~~~~~rv 76 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGY-K---VGGFITPEVREGGKRIGFKI----VDLATGEEGILARVGFSRPRV 76 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCc-e---eeeEEeeeeecCCeEeeeEE----EEccCCceEEEEEcCCCCccc
Confidence 46799999999999999999876511 110 0 11111111111111222222 111111 0011
Q ss_pred --EEEcCCCCcc-chHHHHHHHHhcCeEEEEEcCCCccccch---HHHHHHhhhhcCCcEEEEecccc
Q 047363 77 --NLIDSPGHMD-FCSEVSTAARLSDGALVLVDAVEGVHIQT---HAVLRQSWIEKLTPCLVLNKIDR 138 (876)
Q Consensus 77 --nlIDTPGh~d-F~~e~~~al~~aDgaIlVvDa~egv~~~t---~~~l~~~~~~~ip~ilviNKiD~ 138 (876)
+.+|+-+..+ ......+|++.|| |++||=.-.....+ ...++.+...+.|.|.++-+-++
T Consensus 77 GkY~V~v~~le~i~~~al~rA~~~aD--vIIIDEIGpMElks~~f~~~ve~vl~~~kpliatlHrrsr 142 (179)
T COG1618 77 GKYGVNVEGLEEIAIPALRRALEEAD--VIIIDEIGPMELKSKKFREAVEEVLKSGKPLIATLHRRSR 142 (179)
T ss_pred ceEEeeHHHHHHHhHHHHHHHhhcCC--EEEEecccchhhccHHHHHHHHHHhcCCCcEEEEEecccC
Confidence 1222222221 2344566777778 45578654443333 44566667788898888876655
No 466
>cd03695 CysN_NodQ_II CysN_NodQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which sho
Probab=93.83 E-value=0.2 Score=44.37 Aligned_cols=51 Identities=24% Similarity=0.232 Sum_probs=40.0
Q ss_pred eEEEEEEEeCccCCCCEEEEeccccCCcchhhhccccceeEEeEEEEecCCceeecceeeCCCeEEEe
Q 047363 439 FLAFARIFSGVLYSGQRVFVLSALYDPLKVESMQKHIQEAELQSLYLMMGQGLKPVASAKAGNVVAIR 506 (876)
Q Consensus 439 ~iaf~RV~SGtL~~G~~v~vlg~~y~~~~~~~~~~~~~~~~I~~L~l~~G~~~~~v~~v~AGnIv~I~ 506 (876)
+...+||.+|++++||+|.++..+ ...+|..+... ..+++.|.|||.++|.
T Consensus 16 ~~v~Gkv~~G~v~~Gd~v~~~P~~-------------~~~~V~si~~~----~~~~~~a~aGd~v~l~ 66 (81)
T cd03695 16 RGYAGTIASGSIRVGDEVVVLPSG-------------KTSRVKSIETF----DGELDEAGAGESVTLT 66 (81)
T ss_pred EEEEEEEccceEECCCEEEEcCCC-------------CeEEEEEEEEC----CcEeCEEcCCCEEEEE
Confidence 357999999999999999987421 23678887643 4568899999999984
No 467
>cd03688 eIF2_gamma_II eIF2_gamma_II: this subfamily represents the domain II of the gamma subunit of eukaryotic translation initiation factor 2 (eIF2-gamma) found in Eukaryota and Archaea. eIF2 is a G protein that delivers the methionyl initiator tRNA to the small ribosomal subunit and releases it upon GTP hydrolysis after the recognition of the initiation codon. eIF2 is composed three subunits, alpha, beta and gamma. Subunit gamma shows strongest conservation, and it confers both tRNA binding and GTP/GDP binding.
Probab=93.82 E-value=0.52 Score=44.17 Aligned_cols=104 Identities=16% Similarity=0.140 Sum_probs=61.8
Q ss_pred CCCCeEEEEEEeeeecccccCCCCCCccccccccCCCCCCCCccceEEEEEEEeCccCCCCEEEEeccccCCcchhhhcc
Q 047363 394 PEAPCVAFVSKMFAVPIKMLPQRGSNGEILDNYADKGGNGESEECFLAFARIFSGVLYSGQRVFVLSALYDPLKVESMQK 473 (876)
Q Consensus 394 ~~~plv~~V~K~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iaf~RV~SGtL~~G~~v~vlg~~y~~~~~~~~~~ 473 (876)
.+.|..++|...|.+..- ..+ .++...=++=++|..|.|+.||+|-+.--......+.-..
T Consensus 2 ~~~pp~M~V~RsFdinkP-------G~~-----------~~~l~GgVigGsi~~G~lkvgdeIEIrpg~~~~~~~~~~~- 62 (113)
T cd03688 2 FTSPPRMIVIRSFDVNKP-------GTE-----------VDDLKGGVAGGSLLQGVLKVGDEIEIRPGIVVKDEGKIKC- 62 (113)
T ss_pred CCCCceEEEEEEEecCCC-------CCc-----------cccceeeEEEEEEEEEEEeCCCEEEEeeceeeecCCCeeE-
Confidence 356778888888876531 000 1122234889999999999999998761111100000000
Q ss_pred ccceeEEeEEEEecCCceeecceeeCCCeEEE-ecCCceeeccceecC
Q 047363 474 HIQEAELQSLYLMMGQGLKPVASAKAGNVVAI-RGLGQQILKSATLSS 520 (876)
Q Consensus 474 ~~~~~~I~~L~l~~G~~~~~v~~v~AGnIv~I-~GL~~~i~k~~Tl~s 520 (876)
.....+|..|+. ++ ..+++|.||..++| ..|+-.+.+++.|..
T Consensus 63 ~pi~T~I~sl~~--~~--~~l~~a~pGgliGvgT~Ldpsltk~D~l~G 106 (113)
T cd03688 63 RPIFTKIVSLKA--EN--NDLQEAVPGGLIGVGTKLDPTLTKADRLVG 106 (113)
T ss_pred EEEEEEEEEEEe--cC--ccccEEeCCCeEEEccccCccccccceeeE
Confidence 001235555443 33 35889999999999 467777777776654
No 468
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=93.67 E-value=0.18 Score=54.53 Aligned_cols=65 Identities=12% Similarity=0.017 Sum_probs=37.5
Q ss_pred CeEEEEEcCCCCccchHH-HHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcE-EEEeccc
Q 047363 73 DYAINLIDSPGHMDFCSE-VSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPC-LVLNKID 137 (876)
Q Consensus 73 ~~~inlIDTPGh~dF~~e-~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~i-lviNKiD 137 (876)
+|.+.||||||+..-... ...++..||.+|+++.+..-.......+++.+...+.+.. ++.|+.+
T Consensus 113 ~yD~ViIDt~~~~~~~~~~~~~~~~aaD~vlip~~p~~~si~~~~~~~~~i~~~~~~~~~vv~~~~~ 179 (264)
T PRK13231 113 DIDVVIYDVLGDVVCGGFSVPLREDYADEVYIVTSGEYMSLYAANNIARGIKKLKGKLGGIICNCRG 179 (264)
T ss_pred CCCEEEEecCCCceEccccccccccccceeEEEecCchhHHHHHHHHHHHHHHcCCcceEEEEcCCC
Confidence 589999999986532111 1111268999999998754333334444555544444433 4555544
No 469
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=93.61 E-value=0.23 Score=53.44 Aligned_cols=66 Identities=17% Similarity=0.153 Sum_probs=41.4
Q ss_pred CeEEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHh---hhhc----CCcEEEEecccccc
Q 047363 73 DYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQS---WIEK----LTPCLVLNKIDRLI 140 (876)
Q Consensus 73 ~~~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~---~~~~----ip~ilviNKiD~~~ 140 (876)
+|.+.|||||+.. ...+..++..+|.+++.+-+..-....+..+++.. .+.+ .+..+++|+.|...
T Consensus 119 ~yD~iiID~pp~l--~~l~~nal~asd~vlIP~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~~~~~ 191 (259)
T COG1192 119 DYDYIIIDTPPSL--GVLTLNALAAADHVLIPVQPEFLDLEGLEQLLNTLEDLLKLRRNKLIVVGILITRFDSRT 191 (259)
T ss_pred CCCEEEECCCCch--hHHHHHHHHHcCeeEEecCchHHHHHHHHHHHHHHHHHHHhcCCCcceEEEeeceEcCCc
Confidence 6999999999987 46788899999977777766432222222222222 2212 22336778888754
No 470
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=93.60 E-value=0.1 Score=52.32 Aligned_cols=24 Identities=29% Similarity=0.520 Sum_probs=21.9
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHh
Q 047363 9 IRNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
++-++|+|..|+|||||+++|+..
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~ 25 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRK 25 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHH
Confidence 467899999999999999999877
No 471
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=93.42 E-value=0.15 Score=55.40 Aligned_cols=63 Identities=8% Similarity=0.012 Sum_probs=35.3
Q ss_pred CeEEEEEcCCCCccchHH-HHHHHHhcCeEEEEEcCCCccccchHHHHHH---h-hhhcCCcE-EEEec
Q 047363 73 DYAINLIDSPGHMDFCSE-VSTAARLSDGALVLVDAVEGVHIQTHAVLRQ---S-WIEKLTPC-LVLNK 135 (876)
Q Consensus 73 ~~~inlIDTPGh~dF~~e-~~~al~~aDgaIlVvDa~egv~~~t~~~l~~---~-~~~~ip~i-lviNK 135 (876)
+|.+.||||||..-...- ...++..||.+|+++.+..-.......+++. + ...+++.. ++.|+
T Consensus 115 ~yD~iiIDt~~~~~~~~~~~~~~~~aAD~viip~~p~~~sl~~~~~l~~~i~~~~~~~~~~~~giv~n~ 183 (275)
T TIGR01287 115 DLDFVFYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEMMALYAANNICKGILKYAKSGGVRLGGLICNS 183 (275)
T ss_pred cCCEEEEeccCcceecceeeccccccccEEEEEecchHHHHHHHHHHHHHHHHHHhcCCCeeeEEEEcC
Confidence 589999999996521111 1223457899999998764333233333332 2 22355554 34454
No 472
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=93.38 E-value=0.069 Score=58.65 Aligned_cols=25 Identities=28% Similarity=0.250 Sum_probs=22.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHh
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
+-+.|+|+|+.|+||||++..|...
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~ 217 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAAR 217 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999775
No 473
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.37 E-value=0.23 Score=55.63 Aligned_cols=125 Identities=18% Similarity=0.260 Sum_probs=64.0
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhhC-CCCcccccCC-ceee--ccChhh-hhhcceeeeeeEEEE-------------EE
Q 047363 10 RNISILAHVDHGKTTLADHLIAATG-GGLLHPKLAG-KLRF--MDYLDE-EQRRAITMKSSSIAL-------------HY 71 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~t~-~g~i~~~~~g-~~~~--~d~~~~-E~~rgiti~~~~i~~-------------~~ 71 (876)
-.|.++|--|+||||.+-.|.++-. .|.-.....+ ++|. .|.... ...-++.+..+.... .-
T Consensus 102 sVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~fKk 181 (483)
T KOG0780|consen 102 SVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRFKK 181 (483)
T ss_pred cEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHHHh
Confidence 4578899999999999988877611 1111100011 1111 111111 111233322211111 11
Q ss_pred cCeEEEEEcCCCCccc----hHHHHHHHHh--cCeEEEEEcCCCccccchHHHHHHhh--hhcCCc-EEEEeccccc
Q 047363 72 KDYAINLIDSPGHMDF----CSEVSTAARL--SDGALVLVDAVEGVHIQTHAVLRQSW--IEKLTP-CLVLNKIDRL 139 (876)
Q Consensus 72 ~~~~inlIDTPGh~dF----~~e~~~al~~--aDgaIlVvDa~egv~~~t~~~l~~~~--~~~ip~-ilviNKiD~~ 139 (876)
+++.+.|+||.|...- ..|+...... =|-+|+|+|+.-|-.. ..|+. +..+-+ -++++|+|-.
T Consensus 182 e~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaa-----e~Qa~aFk~~vdvg~vIlTKlDGh 253 (483)
T KOG0780|consen 182 ENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAA-----EAQARAFKETVDVGAVILTKLDGH 253 (483)
T ss_pred cCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhH-----HHHHHHHHHhhccceEEEEecccC
Confidence 2688999999995532 2333222222 3889999999876432 12222 222222 3678999975
No 474
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=93.33 E-value=0.051 Score=60.58 Aligned_cols=25 Identities=16% Similarity=0.286 Sum_probs=22.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHh
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
...-|++||.+|+||||++|.|-..
T Consensus 306 kqISVGfiGYPNvGKSSiINTLR~K 330 (572)
T KOG2423|consen 306 KQISVGFIGYPNVGKSSIINTLRKK 330 (572)
T ss_pred cceeeeeecCCCCchHHHHHHHhhc
Confidence 4567999999999999999999765
No 475
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=93.32 E-value=0.27 Score=54.44 Aligned_cols=122 Identities=26% Similarity=0.300 Sum_probs=68.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhhC-CCCcccccCCceeeccChh---hhh------hcceeeeee-----EEEEEE-
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAATG-GGLLHPKLAGKLRFMDYLD---EEQ------RRAITMKSS-----SIALHY- 71 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t~-~g~i~~~~~g~~~~~d~~~---~E~------~rgiti~~~-----~i~~~~- 71 (876)
+.-.|.++|-.|+||||.+-.|.+.-- .|.-.- +...|+.. .|| +-|+.+-.. +.++.|
T Consensus 138 ~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~Vl-----laA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafD 212 (340)
T COG0552 138 KPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVL-----LAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFD 212 (340)
T ss_pred CcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEE-----EEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHH
Confidence 456689999999999999988877510 111000 01112211 122 123332111 111111
Q ss_pred -------cCeEEEEEcCCCCc----cchHHHHHHHHhc---Ce-----EEEEEcCCCccccchHHHHHHhhhh--cCCc-
Q 047363 72 -------KDYAINLIDSPGHM----DFCSEVSTAARLS---DG-----ALVLVDAVEGVHIQTHAVLRQSWIE--KLTP- 129 (876)
Q Consensus 72 -------~~~~inlIDTPGh~----dF~~e~~~al~~a---Dg-----aIlVvDa~egv~~~t~~~l~~~~~~--~ip~- 129 (876)
+++.+.||||.|.. ++..|...-.|++ +. +++|+||.-|-. -+.|++.. -+++
T Consensus 213 Ai~~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqn-----al~QAk~F~eav~l~ 287 (340)
T COG0552 213 AIQAAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQN-----ALSQAKIFNEAVGLD 287 (340)
T ss_pred HHHHHHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChh-----HHHHHHHHHHhcCCc
Confidence 16889999999943 4667766666665 33 777889987743 23344322 2333
Q ss_pred EEEEeccccc
Q 047363 130 CLVLNKIDRL 139 (876)
Q Consensus 130 ilviNKiD~~ 139 (876)
-++++|+|-.
T Consensus 288 GiIlTKlDgt 297 (340)
T COG0552 288 GIILTKLDGT 297 (340)
T ss_pred eEEEEecccC
Confidence 4789999943
No 476
>cd03692 mtIF2_IVc mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation initiation factor 2 (mtIF2) which adopts a beta-barrel fold displaying a high degree of structural similarity with domain II of the translation elongation factor EF-Tu. The C-terminal part of mtIF2 contains the entire fMet-tRNAfmet binding site of IF-2 and is resistant to proteolysis. This C-terminal portion consists of two domains, IF2 C1 and IF2 C2. IF2 C2 been shown to contain all molecular determinants necessary and sufficient for the recognition and binding of fMet-tRNAfMet. Like IF2 from certain prokaryotes such as Thermus thermophilus, mtIF2lacks domain II which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=93.30 E-value=0.27 Score=43.77 Aligned_cols=54 Identities=26% Similarity=0.218 Sum_probs=42.3
Q ss_pred eEEEEEEEeCccCCCCEEEEeccccCCcchhhhccccceeEEeEEEEecCCceeecceeeCCCeEEEe
Q 047363 439 FLAFARIFSGVLYSGQRVFVLSALYDPLKVESMQKHIQEAELQSLYLMMGQGLKPVASAKAGNVVAIR 506 (876)
Q Consensus 439 ~iaf~RV~SGtL~~G~~v~vlg~~y~~~~~~~~~~~~~~~~I~~L~l~~G~~~~~v~~v~AGnIv~I~ 506 (876)
.++.+||-+|++++|+.++++..+ + .+.+.+|..|... ..++++|.+|+-|+|.
T Consensus 16 ~vag~kV~~G~l~~g~~v~vlr~~------~----~~~~g~i~sl~~~----~~~v~~a~~G~ecgi~ 69 (84)
T cd03692 16 NIAGCYVTDGKIKRNAKVRVLRNG------E----VIYEGKISSLKRF----KDDVKEVKKGYECGIT 69 (84)
T ss_pred EEEEEEEEECEEeCCCEEEEEcCC------C----EEEEEEEEEEEEc----CcccCEECCCCEEEEE
Confidence 589999999999999999998532 0 1123577777754 6678999999999985
No 477
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=93.21 E-value=0.32 Score=48.76 Aligned_cols=24 Identities=38% Similarity=0.542 Sum_probs=21.9
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHh
Q 047363 9 IRNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
++.|+|+|..|+|||||+++|+..
T Consensus 1 m~vi~i~G~~gsGKTTli~~L~~~ 24 (159)
T cd03116 1 MKVIGFVGYSGSGKTTLLEKLIPA 24 (159)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 367999999999999999999876
No 478
>PRK12288 GTPase RsgA; Reviewed
Probab=93.19 E-value=0.47 Score=53.68 Aligned_cols=46 Identities=24% Similarity=0.255 Sum_probs=33.4
Q ss_pred HHhcCeEEEEEcCCCccccch-HHHHHHhhhhcCCcEEEEecccccc
Q 047363 95 ARLSDGALVLVDAVEGVHIQT-HAVLRQSWIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 95 l~~aDgaIlVvDa~egv~~~t-~~~l~~~~~~~ip~ilviNKiD~~~ 140 (876)
...+|.+++|.+......... ...+..+...++|+++|+||+|+..
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~~~i~~VIVlNK~DL~~ 164 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACETLGIEPLIVLNKIDLLD 164 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCC
Confidence 356899999998765544433 3344456677899999999999964
No 479
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=93.12 E-value=0.095 Score=49.18 Aligned_cols=22 Identities=36% Similarity=0.351 Sum_probs=20.5
Q ss_pred EEEEEeCCCCcHHHHHHHHHHh
Q 047363 11 NISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
.|+|.|.+|+||||++..|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999887
No 480
>KOG2484 consensus GTPase [General function prediction only]
Probab=93.06 E-value=0.076 Score=59.63 Aligned_cols=53 Identities=26% Similarity=0.433 Sum_probs=0.0
Q ss_pred EEEEEeCCCCcHHHHHHHHHHh--hCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCc
Q 047363 11 NISILAHVDHGKTTLADHLIAA--TGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHM 85 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~--t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~ 85 (876)
.++|+|-+++||||++++|... |..|... |+|.....+.+ +..|-|+|+||.+
T Consensus 254 rvGViG~PNVGKSSvINsL~~~k~C~vg~~p-------------------GvT~smqeV~L---dk~i~llDsPgiv 308 (435)
T KOG2484|consen 254 RVGIIGYPNVGKSSVINSLKRRKACNVGNVP-------------------GVTRSMQEVKL---DKKIRLLDSPGIV 308 (435)
T ss_pred EeeeecCCCCChhHHHHHHHHhccccCCCCc-------------------cchhhhhheec---cCCceeccCCcee
No 481
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=93.06 E-value=0.36 Score=56.78 Aligned_cols=116 Identities=15% Similarity=0.151 Sum_probs=65.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCC-Ccc
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPG-HMD 86 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPG-h~d 86 (876)
++-..-++|+-++|||.+++++++. . ++....+ ...-..++.+ +......+.+.|-|.+- --+
T Consensus 424 ~Vf~C~V~G~k~~GKs~lL~sflgr--~--~~~~~~~----------~~~~~~avn~--v~~~g~~k~LiL~ei~~~~~~ 487 (625)
T KOG1707|consen 424 KVFQCFVVGPKNCGKSALLQSFLGR--S--MSDNNTG----------TTKPRYAVNS--VEVKGQQKYLILREIGEDDQD 487 (625)
T ss_pred eeeeEEEEcCCcCchHHHHHHHhcc--c--ccccccc----------CCCCceeeee--eeeccccceEEEeecCccccc
Confidence 3455578999999999999999875 1 1110000 0001111211 11112223334444443 223
Q ss_pred chHHHHHHHHhcCeEEEEEcCCCccccch-HHHHHH-hhhhcCCcEEEEecccccccc
Q 047363 87 FCSEVSTAARLSDGALVLVDAVEGVHIQT-HAVLRQ-SWIEKLTPCLVLNKIDRLISE 142 (876)
Q Consensus 87 F~~e~~~al~~aDgaIlVvDa~egv~~~t-~~~l~~-~~~~~ip~ilviNKiD~~~~e 142 (876)
|..+-. ..||.+++++|........- ..+.+. -...++|.++|..|+|+....
T Consensus 488 ~l~~ke---~~cDv~~~~YDsS~p~sf~~~a~v~~~~~~~~~~Pc~~va~K~dlDe~~ 542 (625)
T KOG1707|consen 488 FLTSKE---AACDVACLVYDSSNPRSFEYLAEVYNKYFDLYKIPCLMVATKADLDEVP 542 (625)
T ss_pred cccCcc---ceeeeEEEecccCCchHHHHHHHHHHHhhhccCCceEEEeeccccchhh
Confidence 333333 78999999999986554433 223222 223789999999999997543
No 482
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=93.06 E-value=0.077 Score=56.29 Aligned_cols=115 Identities=20% Similarity=0.259 Sum_probs=76.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccc--
Q 047363 10 RNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDF-- 87 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF-- 87 (876)
-.++++|.+.+|||||+..|++. .++-.++. +.|...-+....+++-++.+.|.||..+-
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~-----~s~vasye-------------fttl~~vpG~~~y~gaKiqlldlpgiiegak 121 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGT-----FSEVAAYE-------------FTTLTTVPGVIRYKGAKIQLLDLPGIIEGAK 121 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCC-----CCcccccc-------------ceeEEEecceEeccccceeeecCcchhcccc
Confidence 46899999999999999988654 22111111 22333334455678899999999998764
Q ss_pred -----hHHHHHHHHhcCeEEEEEcCCCccccchHHHHHH-hhh-----hcCCcEEEEecccccccccc
Q 047363 88 -----CSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQ-SWI-----EKLTPCLVLNKIDRLISELK 144 (876)
Q Consensus 88 -----~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~-~~~-----~~ip~ilviNKiD~~~~e~~ 144 (876)
..++.+..|-|..+++|+|+...+. ...++.. +.- .+-|+=+..-|-|+-+.++.
T Consensus 122 dgkgrg~qviavartcnli~~vld~~kp~~--hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt 187 (358)
T KOG1487|consen 122 DGKGRGKQVIAVARTCNLIFIVLDVLKPLS--HKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLT 187 (358)
T ss_pred cCCCCccEEEEEeecccEEEEEeeccCccc--HHHHHHHhhhcceeeccCCCCCccccccccCceeee
Confidence 3457778889999999999986653 2233322 222 23466677777777666554
No 483
>PRK08118 topology modulation protein; Reviewed
Probab=92.99 E-value=0.091 Score=53.06 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=21.5
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 047363 10 RNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
+.|.|+|++|+|||||+..|...
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999887
No 484
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=92.97 E-value=0.33 Score=52.26 Aligned_cols=21 Identities=19% Similarity=0.354 Sum_probs=19.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHH
Q 047363 11 NISILAHVDHGKTTLADHLIA 31 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~ 31 (876)
-++|+|+.|+|||||+..+++
T Consensus 32 ~~~iiGPNGaGKSTLlK~iLG 52 (254)
T COG1121 32 ITALIGPNGAGKSTLLKAILG 52 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 579999999999999999987
No 485
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=92.95 E-value=0.31 Score=49.40 Aligned_cols=140 Identities=20% Similarity=0.199 Sum_probs=72.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccchH
Q 047363 10 RNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFCS 89 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~~ 89 (876)
..|.|+|.+++||||++..|....+...+. +.......+|-...+..+- .-.+..|..+.+|.+. .
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~~~~~~~------iat~~~~~~e~~~ri~~h~-----~~R~~~w~t~E~~~~l---~ 67 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQSGLQVLY------IATAQPFDDEMAARIAHHR-----QRRPAHWQTVEEPLDL---A 67 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHcCCCcEe------CcCCCCChHHHHHHHHHHH-----hcCCCCCeEecccccH---H
Confidence 368999999999999999998772111110 0011112222211211100 0013346666776642 1
Q ss_pred HHHHHHHhcCeEEEEEcCCCcccc-----c--h------HHHHHHhhhhcCCcEEEEecccccccccccChHHHHHHHHH
Q 047363 90 EVSTAARLSDGALVLVDAVEGVHI-----Q--T------HAVLRQSWIEKLTPCLVLNKIDRLISELKLTPLEAYNRLLR 156 (876)
Q Consensus 90 e~~~al~~aDgaIlVvDa~egv~~-----~--t------~~~l~~~~~~~ip~ilviNKiD~~~~e~~~~~~~~~~~l~~ 156 (876)
+..... ...+-++++|+...... . . ..+++.+.+.+.+.|+|.|=+..-. .+.+..-..+++
T Consensus 68 ~~i~~~-~~~~~~VlID~Lt~~~~n~l~~~~~~~~~~~l~~li~~L~~~~~tvVlVs~Evg~g~----vp~~~~~r~~~d 142 (170)
T PRK05800 68 ELLRAD-AAPGRCVLVDCLTTWVTNLLFEEGEEAIAAEIDALLAALQQLPAKIILVTNEVGMGI----VPEYRLGRHFRD 142 (170)
T ss_pred HHHHhh-cCCCCEEEehhHHHHHHHHhcccchHHHHHHHHHHHHHHHcCCCCEEEEEcCCcccc----cCCCHHHHHHHH
Confidence 222211 12344788998755421 1 0 1233344556777888876554432 233455566777
Q ss_pred HHHHhhhhhhhc
Q 047363 157 IVHEVNGIMSAY 168 (876)
Q Consensus 157 ~l~~vn~~~~s~ 168 (876)
.+..+|..+...
T Consensus 143 ~lG~lnq~la~~ 154 (170)
T PRK05800 143 IAGRLNQQLAAA 154 (170)
T ss_pred HHHHHHHHHHHH
Confidence 788888776654
No 486
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=92.91 E-value=0.19 Score=41.45 Aligned_cols=47 Identities=26% Similarity=0.270 Sum_probs=25.9
Q ss_pred HHHHHHh-cCeEEEEEcCCCccccchHH---HHHHhhhh--cCCcEEEEeccc
Q 047363 91 VSTAARL-SDGALVLVDAVEGVHIQTHA---VLRQSWIE--KLTPCLVLNKID 137 (876)
Q Consensus 91 ~~~al~~-aDgaIlVvDa~egv~~~t~~---~l~~~~~~--~ip~ilviNKiD 137 (876)
...|++. .+.+++++|.++......+. +++..+.. +.|.++|+||+|
T Consensus 6 ai~AL~hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 6 AITALAHLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp HHHGGGGT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred HHHHHHhhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence 3445544 46788999998765443332 34444433 789999999998
No 487
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=92.89 E-value=0.11 Score=43.72 Aligned_cols=22 Identities=27% Similarity=0.259 Sum_probs=20.2
Q ss_pred EEEEEeCCCCcHHHHHHHHHHh
Q 047363 11 NISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
...|.|+.|+|||||+|++...
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~ 46 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTV 46 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999999775
No 488
>PRK12289 GTPase RsgA; Reviewed
Probab=92.85 E-value=0.12 Score=58.43 Aligned_cols=48 Identities=23% Similarity=0.149 Sum_probs=36.5
Q ss_pred HHHHhcCeEEEEEcCCCcc-cc-chHHHHHHhhhhcCCcEEEEecccccc
Q 047363 93 TAARLSDGALVLVDAVEGV-HI-QTHAVLRQSWIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 93 ~al~~aDgaIlVvDa~egv-~~-~t~~~l~~~~~~~ip~ilviNKiD~~~ 140 (876)
.+++.+|.+++|+|+.+.. .. .....+..+...++|++||+||+|+..
T Consensus 85 ~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~ip~ILVlNK~DLv~ 134 (352)
T PRK12289 85 PPVANADQILLVFALAEPPLDPWQLSRFLVKAESTGLEIVLCLNKADLVS 134 (352)
T ss_pred hhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEchhcCC
Confidence 3588999999999997543 22 234555566677999999999999963
No 489
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=92.74 E-value=0.35 Score=55.14 Aligned_cols=128 Identities=17% Similarity=0.161 Sum_probs=70.8
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeee--------eEEEEEEc---CeEEEE
Q 047363 10 RNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKS--------SSIALHYK---DYAINL 78 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~--------~~i~~~~~---~~~inl 78 (876)
.-|+++|++-+||||++.++....=--.|.. ...+.|..|-+|+.. -|-||.+ .++.+... ..++-+
T Consensus 18 IYiGVVGPVRTGKSTFIKRFMel~VlPnI~d-~~~reRa~DELPQS~-aGktImTTEPKFiP~eAv~I~l~~~~~~kVRL 95 (492)
T PF09547_consen 18 IYIGVVGPVRTGKSTFIKRFMELLVLPNIED-EYERERARDELPQSG-AGKTIMTTEPKFIPNEAVEITLDDGIKVKVRL 95 (492)
T ss_pred eEEEeecCcccCchhHHHHHHHHhcCCCCCC-HHHHHHhhhcCCcCC-CCCceeccCCcccCCcceEEEecCCceEEEEE
Confidence 4589999999999999999987611001110 001112223222211 1222211 11222222 478899
Q ss_pred EcCCCCc--------c-----------------chHHHHHHHHh------cCeEEEEEcCCCccc------cchHHHHHH
Q 047363 79 IDSPGHM--------D-----------------FCSEVSTAARL------SDGALVLVDAVEGVH------IQTHAVLRQ 121 (876)
Q Consensus 79 IDTPGh~--------d-----------------F~~e~~~al~~------aDgaIlVvDa~egv~------~~t~~~l~~ 121 (876)
|||-|+. + |...+..+-+. .=|+|+--|++-+-. ...++++..
T Consensus 96 iDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~E 175 (492)
T PF09547_consen 96 IDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEE 175 (492)
T ss_pred EeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHH
Confidence 9998832 1 22222222221 236666677764432 234668888
Q ss_pred hhhhcCCcEEEEeccccc
Q 047363 122 SWIEKLTPCLVLNKIDRL 139 (876)
Q Consensus 122 ~~~~~ip~ilviNKiD~~ 139 (876)
+++.+.|+|+++|-.+=-
T Consensus 176 Lk~igKPFvillNs~~P~ 193 (492)
T PF09547_consen 176 LKEIGKPFVILLNSTKPY 193 (492)
T ss_pred HHHhCCCEEEEEeCCCCC
Confidence 999999999999988643
No 490
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=92.68 E-value=0.12 Score=59.30 Aligned_cols=83 Identities=18% Similarity=0.159 Sum_probs=59.3
Q ss_pred cceeeeeeEEEEEE-cCeEEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCccc-----------cchHHHHHHhh--
Q 047363 58 RAITMKSSSIALHY-KDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVH-----------IQTHAVLRQSW-- 123 (876)
Q Consensus 58 rgiti~~~~i~~~~-~~~~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv~-----------~~t~~~l~~~~-- 123 (876)
|.-|.....+.+.+ .+..+.++|+.|+..-...+...+...+++|+||+..+=.+ ..+..+++.+.
T Consensus 219 r~~T~Gi~e~~f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~ 298 (389)
T PF00503_consen 219 RVKTTGITEIDFNFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNN 298 (389)
T ss_dssp ----SSEEEEEEEE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTS
T ss_pred cCCCCCeeEEEEEeecccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhC
Confidence 44555556678888 89999999999998888888888999999999999874322 11133444432
Q ss_pred --hhcCCcEEEEecccccc
Q 047363 124 --IEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 124 --~~~ip~ilviNKiD~~~ 140 (876)
-.+.|+||++||+|+..
T Consensus 299 ~~~~~~~iil~lnK~D~f~ 317 (389)
T PF00503_consen 299 PWFKNTPIILFLNKIDLFE 317 (389)
T ss_dssp GGGTTSEEEEEEE-HHHHH
T ss_pred cccccCceEEeeecHHHHH
Confidence 34789999999999975
No 491
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=92.67 E-value=0.58 Score=51.48 Aligned_cols=28 Identities=18% Similarity=0.401 Sum_probs=25.3
Q ss_pred CCCCceEEEEEeCCCCcHHHHHHHHHHh
Q 047363 5 DTRKIRNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 5 ~~~~irnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
...+++|+.|+|.+|.|||++++++...
T Consensus 57 ~~~Rmp~lLivG~snnGKT~Ii~rF~~~ 84 (302)
T PF05621_consen 57 KRHRMPNLLIVGDSNNGKTMIIERFRRL 84 (302)
T ss_pred cccCCCceEEecCCCCcHHHHHHHHHHH
Confidence 4467899999999999999999999876
No 492
>cd03694 GTPBP_II Domain II of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=92.63 E-value=0.41 Score=42.87 Aligned_cols=55 Identities=16% Similarity=0.213 Sum_probs=40.7
Q ss_pred eEEEEEEEeCccCCCCEEEEeccccCCcchhhhccccceeEEeEEEEecCCceeecceeeCCCeEEEe
Q 047363 439 FLAFARIFSGVLYSGQRVFVLSALYDPLKVESMQKHIQEAELQSLYLMMGQGLKPVASAKAGNVVAIR 506 (876)
Q Consensus 439 ~iaf~RV~SGtL~~G~~v~vlg~~y~~~~~~~~~~~~~~~~I~~L~l~~G~~~~~v~~v~AGnIv~I~ 506 (876)
.+..+||.+|++++||++.++. ..+ ++ ....+|..|..- ..++++|.|||.+++.
T Consensus 16 tVv~G~v~~G~v~~g~~v~~~P-~~~---g~-----~~~~~V~sI~~~----~~~~~~a~aGd~v~l~ 70 (87)
T cd03694 16 TVVGGTVSKGVIRLGDTLLLGP-DQD---GS-----FRPVTVKSIHRN----RSPVRVVRAGQSASLA 70 (87)
T ss_pred eEEEEEEecCEEeCCCEEEECC-CCC---CC-----EeEEEEEEEEEC----CeECCEECCCCEEEEE
Confidence 4889999999999999998753 211 10 124678887643 5668899999999984
No 493
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=92.61 E-value=0.25 Score=61.73 Aligned_cols=66 Identities=17% Similarity=-0.044 Sum_probs=46.8
Q ss_pred CeEEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcE-EEEeccccc
Q 047363 73 DYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPC-LVLNKIDRL 139 (876)
Q Consensus 73 ~~~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~i-lviNKiD~~ 139 (876)
.|.+.|||||+..... .+......+|++|+|+....-........++.+...+.+++ +|+|+.|..
T Consensus 655 ~yD~IiID~pp~~~~~-d~~~l~~~~D~vl~v~~~~~~~~~~~~~~~~~l~~~~~~~~GvvlN~~~~~ 721 (754)
T TIGR01005 655 YSDCVVVDVGTADPVR-DMRAAARLAIIMLLVTAYDRVVVECGRADAQGISRLNGEVTGVFLNMLDPN 721 (754)
T ss_pred hCCEEEEcCCCcchhH-HHHHhhhhCCeEEEEEEeCceeHHHHHHHHHHHHhcCCceEEEEecCCChh
Confidence 5889999999976543 34444567999999988644334445566666666676665 789999854
No 494
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=92.45 E-value=0.68 Score=44.99 Aligned_cols=21 Identities=38% Similarity=0.420 Sum_probs=19.4
Q ss_pred EEEEeCCCCcHHHHHHHHHHh
Q 047363 12 ISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 12 I~IvG~~~~GKTTL~~~Ll~~ 32 (876)
++|.|++|+|||||+..+...
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~ 22 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALN 22 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHH
Confidence 689999999999999999877
No 495
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=92.41 E-value=0.76 Score=49.95 Aligned_cols=63 Identities=16% Similarity=0.149 Sum_probs=46.0
Q ss_pred eEEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcE---EEEecccc
Q 047363 74 YAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPC---LVLNKIDR 138 (876)
Q Consensus 74 ~~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~i---lviNKiD~ 138 (876)
+.+.|||||+-.. .++..++..+|.+|+|....-.--..+...++.+...+.+.. +|+|+++-
T Consensus 113 ~D~iliD~~aGl~--~~~~~~~~~sd~~viVt~pe~~si~~A~~~i~~~~~~~~~~~~~~vV~N~v~~ 178 (262)
T COG0455 113 YDYILIDTGAGLS--RDTLSFILSSDELVIVTTPEPTSITDAYKTIKILSKLGLDLLGRRVVLNRVRS 178 (262)
T ss_pred CCEEEEeCCCCcc--HHHHHHHHhcCcEEEEeCCCcchHHHHHHHHHHHHHcCCccccceEEEEeccc
Confidence 6899999999654 567788888899999987653322334556677777777653 89999983
No 496
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=92.34 E-value=0.21 Score=56.06 Aligned_cols=83 Identities=14% Similarity=0.092 Sum_probs=62.4
Q ss_pred cceeeeeeEEEEEEcCeEEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCccccc-----------hHHHHHHhh---
Q 047363 58 RAITMKSSSIALHYKDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQ-----------THAVLRQSW--- 123 (876)
Q Consensus 58 rgiti~~~~i~~~~~~~~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~-----------t~~~l~~~~--- 123 (876)
|--|.....+.+.+++..+-++|++|+..=...+......++++|+|++.++=.+.. +..+++...
T Consensus 179 R~~T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~ 258 (354)
T KOG0082|consen 179 RVPTTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNK 258 (354)
T ss_pred ccCcCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCc
Confidence 455666677888899999999999999887788888999999999999987532211 122333222
Q ss_pred -hhcCCcEEEEecccccc
Q 047363 124 -IEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 124 -~~~ip~ilviNKiD~~~ 140 (876)
=.+.++|||+||.|+..
T Consensus 259 ~F~~tsiiLFLNK~DLFe 276 (354)
T KOG0082|consen 259 WFANTSIILFLNKKDLFE 276 (354)
T ss_pred ccccCcEEEEeecHHHHH
Confidence 23579999999999974
No 497
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=92.26 E-value=0.45 Score=59.20 Aligned_cols=65 Identities=11% Similarity=0.165 Sum_probs=47.2
Q ss_pred CeEEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcE-EEEecccc
Q 047363 73 DYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPC-LVLNKIDR 138 (876)
Q Consensus 73 ~~~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~i-lviNKiD~ 138 (876)
.|.+.|||||......+ .....+.+|++|+|+.............++.+...+.+++ +|+|++|.
T Consensus 640 ~yD~IIIDtPP~~~~~D-a~~la~~ad~~llVvr~~~t~~~~~~~~~~~l~~~~~~~~G~VlN~~~~ 705 (726)
T PRK09841 640 HYDLVIVDTPPMLAVSD-AAVVGRSVGTSLLVARFGLNTAKEVSLSMQRLEQAGVNIKGAILNGVIK 705 (726)
T ss_pred cCCEEEEeCCCccccch-HHHHHHhCCeEEEEEeCCCCCHHHHHHHHHHHHhCCCceEEEEEeCccc
Confidence 48899999999766543 3444578899999987654444445566677777778776 78999974
No 498
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=91.96 E-value=0.23 Score=47.05 Aligned_cols=21 Identities=38% Similarity=0.349 Sum_probs=18.9
Q ss_pred EEEEeCCCCcHHHHHHHHHHh
Q 047363 12 ISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 12 I~IvG~~~~GKTTL~~~Ll~~ 32 (876)
|++.|.+|+||||++..|...
T Consensus 2 i~~~GkgG~GKTt~a~~la~~ 22 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARY 22 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999888665
No 499
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.85 E-value=0.15 Score=65.14 Aligned_cols=68 Identities=25% Similarity=0.302 Sum_probs=41.7
Q ss_pred CeEEEEEcCCCCc------cchH--H---------HHHHHHhcCeEEEEEcCCCccccchHH---H----------HHHh
Q 047363 73 DYAINLIDSPGHM------DFCS--E---------VSTAARLSDGALVLVDAVEGVHIQTHA---V----------LRQS 122 (876)
Q Consensus 73 ~~~inlIDTPGh~------dF~~--e---------~~~al~~aDgaIlVvDa~egv~~~t~~---~----------l~~~ 122 (876)
.-.-.+|||.|-. ++.+ + -.+..+-.+|||+.+|+.+=....-.. + +++.
T Consensus 173 ~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~t 252 (1188)
T COG3523 173 TDEAVLIDTAGRYITQDSADEVDRAEWLGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRET 252 (1188)
T ss_pred ccceEEEcCCcceecccCcchhhHHHHHHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 3466799999932 1211 1 223345579999999987533222111 1 2223
Q ss_pred hhhcCCcEEEEecccccc
Q 047363 123 WIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 123 ~~~~ip~ilviNKiD~~~ 140 (876)
....+|+.|++||+|++-
T Consensus 253 L~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 253 LHARLPVYLVLTKADLLP 270 (1188)
T ss_pred hccCCceEEEEecccccc
Confidence 345789999999999974
No 500
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=91.82 E-value=0.15 Score=52.15 Aligned_cols=23 Identities=39% Similarity=0.423 Sum_probs=21.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 047363 10 RNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
++|.|+|++|+||||++..|...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999888
Done!