Query 047363
Match_columns 876
No_of_seqs 396 out of 2680
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 18:14:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047363.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047363hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1n0u_A EF-2, elongation factor 100.0 1E-112 5E-117 1048.1 65.0 666 5-844 15-699 (842)
2 4fn5_A EF-G 1, elongation fact 100.0 3.8E-92 1.3E-96 854.6 32.7 565 5-841 9-591 (709)
3 2rdo_7 EF-G, elongation factor 100.0 2.2E-79 7.6E-84 740.3 54.6 558 4-841 5-585 (704)
4 2xex_A Elongation factor G; GT 100.0 9.5E-78 3.2E-82 725.5 48.0 555 4-841 5-573 (693)
5 1dar_A EF-G, elongation factor 100.0 7.4E-77 2.5E-81 717.5 40.0 498 5-658 8-520 (691)
6 3j25_A Tetracycline resistance 100.0 1.4E-79 4.7E-84 735.6 4.6 442 8-658 1-454 (638)
7 2dy1_A Elongation factor G; tr 100.0 1.5E-70 5.2E-75 660.3 48.2 476 1-656 1-491 (665)
8 3vqt_A RF-3, peptide chain rel 100.0 1.5E-72 5.3E-77 662.4 28.0 452 6-619 28-500 (548)
9 2h5e_A Peptide chain release f 100.0 3.9E-58 1.3E-62 538.0 28.9 448 7-618 11-476 (529)
10 3tr5_A RF-3, peptide chain rel 100.0 6.3E-56 2.2E-60 518.8 33.2 446 7-618 11-475 (528)
11 2ywe_A GTP-binding protein LEP 100.0 2.7E-51 9.1E-56 483.9 36.3 362 6-618 3-380 (600)
12 3cb4_D GTP-binding protein LEP 100.0 4.5E-50 1.6E-54 474.2 37.5 361 7-618 2-378 (599)
13 2c78_A Elongation factor TU-A; 99.9 1.3E-26 4.5E-31 263.5 24.5 132 7-140 9-142 (405)
14 3j2k_7 ERF3, eukaryotic polype 99.9 4.8E-26 1.6E-30 261.4 28.7 134 7-142 15-171 (439)
15 1d2e_A Elongation factor TU (E 99.9 1.2E-26 4.2E-31 263.1 21.6 129 9-140 3-133 (397)
16 1g7s_A Translation initiation 99.9 9.4E-27 3.2E-31 275.5 20.6 323 8-560 4-373 (594)
17 1jny_A EF-1-alpha, elongation 99.9 2.3E-26 8E-31 263.8 20.8 133 7-141 4-159 (435)
18 3mca_A HBS1, elongation factor 99.9 8.8E-26 3E-30 267.8 16.0 134 5-140 173-329 (592)
19 3avx_A Elongation factor TS, e 99.9 1E-24 3.5E-29 267.9 22.9 131 7-140 294-426 (1289)
20 3p26_A Elongation factor 1 alp 99.9 2.2E-24 7.4E-29 250.7 22.9 131 8-140 32-185 (483)
21 1zun_B Sulfate adenylate trans 99.9 5.3E-24 1.8E-28 244.2 25.6 133 6-140 21-171 (434)
22 1r5b_A Eukaryotic peptide chai 99.9 2.1E-24 7.2E-29 249.7 20.5 134 7-142 41-197 (467)
23 2elf_A Protein translation elo 99.9 8E-24 2.7E-28 237.6 22.7 104 8-138 20-125 (370)
24 3izq_1 HBS1P, elongation facto 99.9 6.1E-24 2.1E-28 252.8 21.6 131 8-140 166-319 (611)
25 1kk1_A EIF2gamma; initiation o 99.9 3.5E-23 1.2E-27 235.7 26.5 121 6-141 7-152 (410)
26 1f60_A Elongation factor EEF1A 99.9 1.5E-23 5E-28 242.0 21.3 132 7-140 5-159 (458)
27 1zo1_I IF2, translation initia 99.9 4.1E-23 1.4E-27 239.0 12.9 118 7-142 2-119 (501)
28 1s0u_A EIF-2-gamma, translatio 99.9 1.3E-21 4.6E-26 222.5 23.6 121 7-142 6-151 (408)
29 3sjy_A Translation initiation 99.9 7.9E-21 2.7E-25 215.8 24.2 131 6-141 5-144 (403)
30 3izy_P Translation initiation 99.9 7.6E-23 2.6E-27 238.6 7.7 117 8-142 3-120 (537)
31 1wb1_A Translation elongation 99.9 5.6E-22 1.9E-26 230.1 12.6 121 9-140 19-139 (482)
32 3e3x_A BIPA; MCSG,PSI2, struct 99.7 3.5E-17 1.2E-21 177.9 11.0 108 504-615 2-119 (332)
33 1wf3_A GTP-binding protein; GT 99.6 8.7E-15 3E-19 159.7 11.9 118 7-141 5-132 (301)
34 2hjg_A GTP-binding protein ENG 99.6 1.5E-14 5.3E-19 165.7 13.7 118 7-141 173-301 (436)
35 2dyk_A GTP-binding protein; GT 99.5 2.8E-14 9.5E-19 138.6 12.8 115 9-140 1-122 (161)
36 4dcu_A GTP-binding protein ENG 99.5 5.2E-14 1.8E-18 162.2 14.9 118 7-141 193-321 (456)
37 3iev_A GTP-binding protein ERA 99.5 5E-14 1.7E-18 154.1 13.3 118 5-139 6-135 (308)
38 3qq5_A Small GTP-binding prote 99.5 5.2E-15 1.8E-19 168.4 5.3 123 1-142 26-156 (423)
39 2lkc_A Translation initiation 99.5 1.2E-14 4E-19 143.8 5.9 118 6-141 5-122 (178)
40 2xtp_A GTPase IMAP family memb 99.5 8.6E-14 2.9E-18 147.8 13.0 118 7-141 20-154 (260)
41 1z0f_A RAB14, member RAS oncog 99.5 2.6E-13 9E-18 133.8 13.4 119 6-140 12-134 (179)
42 2fh5_B SR-beta, signal recogni 99.5 4.1E-13 1.4E-17 137.6 15.3 133 7-163 5-149 (214)
43 3bc1_A RAS-related protein RAB 99.5 2.2E-13 7.5E-18 136.1 13.0 123 1-140 3-141 (195)
44 4dhe_A Probable GTP-binding pr 99.5 8.4E-14 2.9E-18 143.5 9.2 119 4-140 24-158 (223)
45 2p5s_A RAS and EF-hand domain 99.5 1.7E-13 6E-18 139.0 11.2 120 5-140 24-147 (199)
46 3iby_A Ferrous iron transport 99.5 1.9E-13 6.5E-18 145.6 11.5 113 9-141 1-125 (256)
47 3t1o_A Gliding protein MGLA; G 99.4 1.1E-13 3.7E-18 138.9 8.9 129 7-141 12-150 (198)
48 2bme_A RAB4A, RAS-related prot 99.4 4.4E-13 1.5E-17 133.6 13.1 117 6-140 7-129 (186)
49 1ky3_A GTP-binding protein YPT 99.4 2.2E-13 7.6E-18 134.7 10.3 120 5-142 4-134 (182)
50 1svi_A GTP-binding protein YSX 99.4 3.7E-13 1.3E-17 135.4 12.0 118 5-141 19-149 (195)
51 1r2q_A RAS-related protein RAB 99.4 3.4E-13 1.2E-17 131.6 11.4 117 8-140 5-125 (170)
52 2fn4_A P23, RAS-related protei 99.4 6.3E-13 2.2E-17 131.3 13.5 118 4-140 4-128 (181)
53 1ega_A Protein (GTP-binding pr 99.4 4.2E-14 1.4E-18 154.3 5.4 116 7-140 6-130 (301)
54 1u8z_A RAS-related protein RAL 99.4 8.1E-13 2.8E-17 128.5 13.7 117 8-141 3-124 (168)
55 2gf9_A RAS-related protein RAB 99.4 4E-13 1.4E-17 134.9 11.8 119 6-140 19-141 (189)
56 1ek0_A Protein (GTP-binding pr 99.4 7.3E-13 2.5E-17 129.2 13.3 116 10-141 4-123 (170)
57 3k53_A Ferrous iron transport 99.4 3.2E-13 1.1E-17 144.7 11.7 113 8-140 2-123 (271)
58 2efe_B Small GTP-binding prote 99.4 5.2E-13 1.8E-17 132.3 12.4 119 6-140 9-131 (181)
59 2fg5_A RAB-22B, RAS-related pr 99.4 5.8E-13 2E-17 134.3 12.8 118 7-140 21-142 (192)
60 1kao_A RAP2A; GTP-binding prot 99.4 7.3E-13 2.5E-17 128.7 13.0 114 10-140 4-122 (167)
61 3tw8_B RAS-related protein RAB 99.4 2.2E-13 7.5E-18 134.6 9.3 119 5-141 5-128 (181)
62 3lxw_A GTPase IMAP family memb 99.4 8.7E-13 3E-17 139.6 14.4 118 8-142 20-155 (247)
63 1zbd_A Rabphilin-3A; G protein 99.4 5.5E-13 1.9E-17 135.3 12.4 118 7-140 6-127 (203)
64 3tkl_A RAS-related protein RAB 99.4 6.8E-13 2.3E-17 133.4 12.9 117 7-141 14-136 (196)
65 1z2a_A RAS-related protein RAB 99.4 6.3E-13 2.1E-17 129.7 12.2 118 7-140 3-123 (168)
66 2oil_A CATX-8, RAS-related pro 99.4 6.8E-13 2.3E-17 133.5 12.8 121 5-141 21-145 (193)
67 2hxs_A RAB-26, RAS-related pro 99.4 1.3E-12 4.3E-17 129.1 14.4 116 7-140 4-129 (178)
68 1wms_A RAB-9, RAB9, RAS-relate 99.4 6.4E-13 2.2E-17 131.1 12.0 115 7-139 5-129 (177)
69 2hup_A RAS-related protein RAB 99.4 1.5E-12 5E-17 132.8 14.8 117 6-140 26-148 (201)
70 2bov_A RAla, RAS-related prote 99.4 1.2E-12 4.2E-17 132.5 14.2 117 6-141 11-134 (206)
71 2a9k_A RAS-related protein RAL 99.4 1.1E-12 3.8E-17 130.2 13.6 117 6-141 15-138 (187)
72 4bas_A ADP-ribosylation factor 99.4 3E-13 1E-17 136.4 9.4 118 5-141 13-142 (199)
73 1r8s_A ADP-ribosylation factor 99.4 7.2E-13 2.5E-17 129.1 11.9 109 11-140 2-115 (164)
74 1vg8_A RAS-related protein RAB 99.4 3.3E-13 1.1E-17 137.1 9.6 119 5-139 4-130 (207)
75 2y8e_A RAB-protein 6, GH09086P 99.4 1.1E-12 3.8E-17 129.3 13.2 116 8-141 13-134 (179)
76 3gj0_A GTP-binding nuclear pro 99.4 2.1E-13 7.2E-18 140.7 8.2 122 4-141 10-134 (221)
77 1mky_A Probable GTP-binding pr 99.4 5.2E-13 1.8E-17 153.1 12.2 114 9-139 1-123 (439)
78 3kkq_A RAS-related protein M-R 99.4 1.2E-12 4E-17 130.3 13.0 117 7-140 16-137 (183)
79 2il1_A RAB12; G-protein, GDP, 99.4 7.4E-13 2.5E-17 133.7 11.7 116 7-140 24-145 (192)
80 2a5j_A RAS-related protein RAB 99.4 7.1E-13 2.4E-17 133.4 11.4 120 5-140 17-140 (191)
81 1x3s_A RAS-related protein RAB 99.4 7.1E-13 2.4E-17 132.9 11.1 117 8-140 14-135 (195)
82 2g6b_A RAS-related protein RAB 99.4 1E-12 3.5E-17 130.0 12.1 120 6-140 7-130 (180)
83 3dz8_A RAS-related protein RAB 99.4 5E-13 1.7E-17 134.6 9.9 119 7-141 21-143 (191)
84 3pqc_A Probable GTP-binding pr 99.4 7.8E-13 2.7E-17 132.4 11.3 119 3-141 17-148 (195)
85 3clv_A RAB5 protein, putative; 99.4 1.2E-12 4.2E-17 131.4 12.8 64 74-137 93-158 (208)
86 1z06_A RAS-related protein RAB 99.4 1E-12 3.6E-17 131.8 12.1 119 7-141 18-142 (189)
87 2fu5_C RAS-related protein RAB 99.4 4.3E-13 1.5E-17 133.5 9.1 116 7-140 6-127 (183)
88 1upt_A ARL1, ADP-ribosylation 99.4 6.9E-13 2.3E-17 130.0 10.4 114 7-141 5-123 (171)
89 3t5g_A GTP-binding protein RHE 99.4 5.5E-13 1.9E-17 132.4 9.7 116 8-140 5-125 (181)
90 1c1y_A RAS-related protein RAP 99.4 1.3E-12 4.4E-17 127.3 12.1 116 9-141 3-123 (167)
91 1g16_A RAS-related protein SEC 99.4 6.6E-13 2.3E-17 129.8 10.1 114 8-139 2-121 (170)
92 1nrj_B SR-beta, signal recogni 99.4 3.1E-12 1.1E-16 131.4 15.4 119 1-141 4-135 (218)
93 1z0j_A RAB-22, RAS-related pro 99.4 1.4E-12 4.8E-17 127.4 12.2 118 8-141 5-126 (170)
94 1m2o_B GTP-binding protein SAR 99.4 7.1E-13 2.4E-17 133.8 10.4 112 8-140 22-138 (190)
95 1zd9_A ADP-ribosylation factor 99.4 1.2E-12 4.3E-17 131.4 12.1 113 8-140 21-138 (188)
96 2bcg_Y Protein YP2, GTP-bindin 99.4 8.8E-13 3E-17 134.3 10.8 117 6-140 5-127 (206)
97 3cph_A RAS-related protein SEC 99.4 1.3E-12 4.4E-17 133.3 11.9 115 7-139 18-138 (213)
98 2nzj_A GTP-binding protein REM 99.4 1E-12 3.5E-17 129.2 10.6 117 8-141 3-126 (175)
99 2erx_A GTP-binding protein DI- 99.4 1.9E-12 6.6E-17 126.5 12.3 116 9-141 3-124 (172)
100 2gj8_A MNME, tRNA modification 99.4 1.2E-12 4E-17 130.2 10.9 113 10-139 5-128 (172)
101 3i8s_A Ferrous iron transport 99.4 9.8E-13 3.4E-17 141.4 10.9 112 9-140 3-126 (274)
102 2ce2_X GTPase HRAS; signaling 99.4 3E-12 1E-16 123.9 13.2 114 10-140 4-122 (166)
103 2ew1_A RAS-related protein RAB 99.4 2.2E-12 7.4E-17 132.0 12.5 116 7-140 24-145 (201)
104 1z08_A RAS-related protein RAB 99.4 1.2E-12 4E-17 128.2 10.0 119 7-141 4-126 (170)
105 2atx_A Small GTP binding prote 99.4 6.6E-13 2.3E-17 133.7 8.5 118 5-141 14-137 (194)
106 4dsu_A GTPase KRAS, isoform 2B 99.4 2.1E-12 7.1E-17 128.7 11.9 115 9-140 4-123 (189)
107 1mky_A Probable GTP-binding pr 99.4 4.7E-12 1.6E-16 145.2 16.4 117 8-141 179-307 (439)
108 3llu_A RAS-related GTP-binding 99.4 1.2E-12 4.2E-17 132.5 10.2 118 5-141 16-144 (196)
109 2hjg_A GTP-binding protein ENG 99.4 3.2E-13 1.1E-17 154.7 6.5 114 10-140 4-125 (436)
110 1fzq_A ADP-ribosylation factor 99.4 2.3E-12 7.9E-17 128.9 11.8 115 6-141 13-132 (181)
111 2b6h_A ADP-ribosylation factor 99.4 1.3E-12 4.4E-17 132.2 10.0 114 6-140 26-144 (192)
112 1zj6_A ADP-ribosylation factor 99.4 2.8E-12 9.6E-17 128.4 12.4 113 7-140 14-131 (187)
113 1f6b_A SAR1; gtpases, N-termin 99.4 1.1E-12 3.8E-17 133.4 9.4 112 8-140 24-140 (198)
114 2f7s_A C25KG, RAS-related prot 99.4 1.4E-12 4.9E-17 133.8 10.3 119 6-140 22-155 (217)
115 3def_A T7I23.11 protein; chlor 99.4 2.9E-12 9.9E-17 136.6 12.9 116 8-140 35-165 (262)
116 2o52_A RAS-related protein RAB 99.4 1.9E-12 6.5E-17 131.7 10.7 116 7-140 23-144 (200)
117 2wji_A Ferrous iron transport 99.4 3E-12 1E-16 126.0 11.7 112 9-140 3-122 (165)
118 4dcu_A GTP-binding protein ENG 99.3 3.6E-13 1.2E-17 155.1 5.9 115 8-139 22-144 (456)
119 3oes_A GTPase rhebl1; small GT 99.3 2.8E-12 9.4E-17 130.3 11.5 118 7-141 22-144 (201)
120 2h57_A ADP-ribosylation factor 99.3 1.5E-12 5.1E-17 130.8 9.5 115 7-140 19-140 (190)
121 3a1s_A Iron(II) transport prot 99.3 1.9E-12 6.7E-17 137.9 10.7 114 7-140 3-124 (258)
122 3q85_A GTP-binding protein REM 99.3 3.3E-12 1.1E-16 125.0 11.3 116 9-140 2-123 (169)
123 2atv_A RERG, RAS-like estrogen 99.3 5.9E-12 2E-16 127.2 13.4 117 7-141 26-147 (196)
124 3q72_A GTP-binding protein RAD 99.3 1.4E-12 4.7E-17 127.3 8.4 115 9-141 2-121 (166)
125 2h17_A ADP-ribosylation factor 99.3 1.3E-12 4.4E-17 130.4 8.3 113 7-140 19-136 (181)
126 1mh1_A RAC1; GTP-binding, GTPa 99.3 7.4E-13 2.5E-17 131.6 6.5 116 9-141 5-124 (186)
127 1ksh_A ARF-like protein 2; sma 99.3 1.6E-12 5.5E-17 129.8 8.9 114 7-141 16-134 (186)
128 2wjg_A FEOB, ferrous iron tran 99.3 4.2E-12 1.4E-16 126.8 11.8 113 8-140 6-126 (188)
129 2gf0_A GTP-binding protein DI- 99.3 3.4E-12 1.2E-16 128.5 11.2 117 7-140 6-128 (199)
130 3reg_A RHO-like small GTPase; 99.3 1.7E-12 5.7E-17 130.9 8.8 117 8-141 22-142 (194)
131 3cpj_B GTP-binding protein YPT 99.3 2.6E-12 8.9E-17 133.0 10.4 116 7-140 11-132 (223)
132 3con_A GTPase NRAS; structural 99.3 3.5E-12 1.2E-16 127.8 11.0 113 9-140 21-140 (190)
133 1jwy_B Dynamin A GTPase domain 99.3 4.5E-12 1.5E-16 138.2 12.2 134 7-141 22-213 (315)
134 3r7w_A Gtpase1, GTP-binding pr 99.3 4.2E-12 1.5E-16 138.7 11.1 114 10-140 4-129 (307)
135 1h65_A Chloroplast outer envel 99.3 1.4E-11 4.7E-16 131.9 14.5 128 8-153 38-180 (270)
136 1m7b_A RND3/RHOE small GTP-bin 99.3 1.8E-12 6.3E-17 129.6 7.1 118 6-140 4-125 (184)
137 3ihw_A Centg3; RAS, centaurin, 99.3 5.6E-12 1.9E-16 126.7 10.6 109 7-140 18-133 (184)
138 3lxx_A GTPase IMAP family memb 99.3 5.3E-12 1.8E-16 132.4 10.8 120 5-141 25-160 (239)
139 3bwd_D RAC-like GTP-binding pr 99.3 1.2E-12 4.1E-17 129.7 5.3 118 7-141 6-127 (182)
140 4gzl_A RAS-related C3 botulinu 99.3 1.9E-12 6.6E-17 132.2 6.9 118 7-141 28-149 (204)
141 2yc2_C IFT27, small RAB-relate 99.3 1.3E-12 4.5E-17 132.4 5.3 116 9-140 20-146 (208)
142 2ged_A SR-beta, signal recogni 99.3 5.1E-12 1.8E-16 126.9 9.6 129 7-160 46-187 (193)
143 3q3j_B RHO-related GTP-binding 99.3 6E-12 2E-16 129.7 10.2 117 7-140 25-145 (214)
144 1moz_A ARL1, ADP-ribosylation 99.3 1.4E-12 4.7E-17 129.6 5.1 113 7-140 16-133 (183)
145 3c5c_A RAS-like protein 12; GD 99.3 1.5E-11 5.2E-16 123.6 12.8 116 7-140 19-141 (187)
146 2fv8_A H6, RHO-related GTP-bin 99.3 3.7E-12 1.3E-16 130.1 8.2 114 9-141 25-144 (207)
147 2j1l_A RHO-related GTP-binding 99.3 3.6E-12 1.2E-16 131.1 8.0 117 8-141 33-153 (214)
148 2x77_A ADP-ribosylation factor 99.3 1.8E-12 6.2E-17 130.0 5.6 114 7-141 20-138 (189)
149 2q3h_A RAS homolog gene family 99.3 6.2E-12 2.1E-16 127.3 9.6 117 6-141 17-139 (201)
150 1gwn_A RHO-related GTP-binding 99.3 5.2E-12 1.8E-16 129.5 9.1 118 6-140 25-146 (205)
151 3b1v_A Ferrous iron uptake tra 99.3 3.9E-12 1.4E-16 136.7 8.3 112 8-140 2-121 (272)
152 2qpt_A EH domain-containing pr 99.3 9.9E-12 3.4E-16 146.2 12.4 135 5-140 61-232 (550)
153 3gee_A MNME, tRNA modification 99.3 2.7E-12 9.3E-17 148.3 7.5 113 10-141 234-358 (476)
154 4dkx_A RAS-related protein RAB 99.3 1.8E-11 6.1E-16 127.1 12.8 128 6-150 10-141 (216)
155 2qu8_A Putative nucleolar GTP- 99.3 1.4E-11 4.8E-16 127.9 11.7 117 7-141 27-157 (228)
156 2gco_A H9, RHO-related GTP-bin 99.3 3.7E-12 1.3E-16 129.5 7.0 116 9-141 25-144 (201)
157 2j0v_A RAC-like GTP-binding pr 99.3 3.7E-12 1.3E-16 130.2 7.1 117 7-140 7-127 (212)
158 3cbq_A GTP-binding protein REM 99.3 1.8E-11 6E-16 124.3 11.7 119 6-140 20-144 (195)
159 4djt_A GTP-binding nuclear pro 99.3 2.5E-12 8.5E-17 132.1 5.2 116 7-140 9-131 (218)
160 3t5d_A Septin-7; GTP-binding p 99.3 1.5E-11 5.3E-16 131.9 11.6 121 9-140 8-158 (274)
161 3l0i_B RAS-related protein RAB 99.3 5.7E-13 2E-17 135.2 0.1 116 7-140 31-152 (199)
162 3o47_A ADP-ribosylation factor 99.2 6.3E-12 2.1E-16 138.7 7.7 112 9-141 165-281 (329)
163 2iwr_A Centaurin gamma 1; ANK 99.2 1.5E-11 5.1E-16 121.7 9.6 109 8-139 6-121 (178)
164 3geh_A MNME, tRNA modification 99.2 5E-12 1.7E-16 145.5 6.0 113 10-141 225-345 (462)
165 2aka_B Dynamin-1; fusion prote 99.2 7E-11 2.4E-15 127.5 14.3 134 7-141 24-207 (299)
166 3th5_A RAS-related C3 botulinu 98.8 1.5E-12 5.1E-17 132.5 0.0 118 7-141 28-149 (204)
167 1xzp_A Probable tRNA modificat 99.2 1.4E-11 4.7E-16 142.6 7.8 112 10-140 244-364 (482)
168 2cxx_A Probable GTP-binding pr 99.2 2E-11 6.9E-16 121.7 7.6 111 9-141 1-137 (190)
169 3lvq_E ARF-GAP with SH3 domain 99.1 6.6E-11 2.2E-15 137.6 10.5 112 8-140 321-437 (497)
170 2f9l_A RAB11B, member RAS onco 99.1 3.6E-10 1.2E-14 114.6 11.0 115 8-140 4-124 (199)
171 2wkq_A NPH1-1, RAS-related C3 99.1 1.9E-10 6.4E-15 125.5 8.5 114 8-140 154-273 (332)
172 1lnz_A SPO0B-associated GTP-bi 99.1 8.4E-11 2.9E-15 130.3 5.5 114 9-140 158-288 (342)
173 2zej_A Dardarin, leucine-rich 99.0 1.4E-10 4.9E-15 116.0 6.1 117 10-140 3-126 (184)
174 1oix_A RAS-related protein RAB 99.0 1.1E-09 3.7E-14 110.5 12.1 116 7-140 27-148 (191)
175 2qtf_A Protein HFLX, GTP-bindi 99.0 8.2E-10 2.8E-14 123.4 11.5 115 8-140 178-306 (364)
176 2g3y_A GTP-binding protein GEM 99.0 4.2E-10 1.4E-14 116.2 8.3 119 7-140 35-159 (211)
177 3r7w_B Gtpase2, GTP-binding pr 99.0 3.3E-10 1.1E-14 124.0 7.3 112 11-141 1-121 (331)
178 2cjw_A GTP-binding protein GEM 99.0 9.2E-10 3.1E-14 111.3 9.8 118 8-140 5-128 (192)
179 3t34_A Dynamin-related protein 99.0 1.3E-09 4.6E-14 121.4 12.0 134 8-141 33-218 (360)
180 2x2e_A Dynamin-1; nitration, h 99.0 1.4E-09 4.8E-14 121.0 11.5 133 8-141 30-212 (353)
181 2j69_A Bacterial dynamin-like 99.0 1.1E-09 3.6E-14 132.4 11.2 68 74-141 174-245 (695)
182 2e87_A Hypothetical protein PH 99.0 1.8E-09 6.1E-14 120.3 11.3 116 7-140 165-294 (357)
183 2p67_A LAO/AO transport system 98.9 5.9E-10 2E-14 123.5 6.6 63 71-140 146-208 (341)
184 2qag_A Septin-2, protein NEDD5 98.9 1.2E-09 4.2E-14 121.9 8.5 121 10-140 38-188 (361)
185 3dpu_A RAB family protein; roc 98.9 6.6E-10 2.2E-14 130.5 6.2 118 6-141 38-165 (535)
186 1pui_A ENGB, probable GTP-bind 98.9 1.6E-09 5.3E-14 110.3 8.1 114 8-140 25-151 (210)
187 1wxq_A GTP-binding protein; st 98.9 1.4E-09 4.7E-14 123.0 7.9 90 11-110 2-114 (397)
188 4a9a_A Ribosome-interacting GT 98.9 3.8E-09 1.3E-13 118.1 11.1 115 9-142 72-198 (376)
189 3p32_A Probable GTPase RV1496/ 98.8 5.2E-09 1.8E-13 116.5 8.8 120 7-140 77-231 (355)
190 2wsm_A Hydrogenase expression/ 98.8 2.3E-09 7.9E-14 110.1 4.9 123 7-140 28-168 (221)
191 3zvr_A Dynamin-1; hydrolase, D 98.7 2.9E-08 9.9E-13 119.7 11.6 134 8-141 50-232 (772)
192 2j37_W Signal recognition part 98.7 1.5E-08 5E-13 117.5 7.7 124 7-140 99-254 (504)
193 3c5h_A Glucocorticoid receptor 98.6 2.1E-08 7.2E-13 106.3 5.6 44 97-140 162-212 (255)
194 2www_A Methylmalonic aciduria 98.6 7.7E-08 2.6E-12 106.8 10.1 62 72-140 165-226 (349)
195 1udx_A The GTP-binding protein 98.6 9.3E-08 3.2E-12 108.4 9.4 113 10-140 158-283 (416)
196 1jal_A YCHF protein; nucleotid 98.5 1E-07 3.5E-12 106.0 7.6 92 10-109 3-108 (363)
197 1yrb_A ATP(GTP)binding protein 98.5 2E-07 7E-12 98.2 8.2 67 73-140 108-185 (262)
198 3ec1_A YQEH GTPase; atnos1, at 98.3 9.2E-08 3.1E-12 107.0 0.6 118 10-142 163-290 (369)
199 2dby_A GTP-binding protein; GD 98.3 1E-06 3.5E-11 98.4 8.5 96 10-109 2-111 (368)
200 3sop_A Neuronal-specific septi 98.2 6.9E-06 2.4E-10 87.8 13.6 122 10-141 3-155 (270)
201 3h2y_A GTPase family protein; 98.2 1.9E-07 6.4E-12 104.5 0.8 119 10-142 161-289 (368)
202 2qag_B Septin-6, protein NEDD5 98.2 3.9E-06 1.3E-10 95.1 11.5 115 9-140 42-190 (427)
203 2qnr_A Septin-2, protein NEDD5 98.2 2.7E-06 9.1E-11 92.5 9.9 121 10-140 19-169 (301)
204 2qag_C Septin-7; cell cycle, c 98.2 2.1E-06 7E-11 97.5 8.8 118 10-140 32-181 (418)
205 2ohf_A Protein OLA1, GTP-bindi 98.2 1.5E-06 5E-11 97.7 6.3 82 10-109 23-128 (396)
206 2qm8_A GTPase/ATPase; G protei 98.1 5.5E-07 1.9E-11 99.5 2.3 61 72-139 146-206 (337)
207 2v3c_C SRP54, signal recogniti 98.0 1.5E-06 5.1E-11 99.1 3.1 123 8-139 98-251 (432)
208 2xxa_A Signal recognition part 98.0 7.3E-06 2.5E-10 93.4 8.6 123 7-139 98-253 (433)
209 3kl4_A SRP54, signal recogniti 98.0 8E-06 2.7E-10 92.9 7.4 124 8-139 96-251 (433)
210 1j8m_F SRP54, signal recogniti 98.0 7.3E-06 2.5E-10 88.8 6.8 122 9-139 98-252 (297)
211 1ni3_A YCHF GTPase, YCHF GTP-b 97.9 1.9E-05 6.6E-10 88.7 9.5 82 10-109 21-127 (392)
212 3dm5_A SRP54, signal recogniti 97.9 2.4E-05 8.3E-10 89.0 10.1 123 8-140 99-253 (443)
213 1cip_A Protein (guanine nucleo 97.9 1.1E-05 3.8E-10 89.5 6.7 82 59-140 178-274 (353)
214 2hf9_A Probable hydrogenase ni 97.9 5.7E-05 2E-09 77.4 11.3 119 7-140 36-178 (226)
215 1zcb_A G alpha I/13; GTP-bindi 97.7 3.5E-05 1.2E-09 85.8 5.9 81 60-140 187-282 (362)
216 4dzz_A Plasmid partitioning pr 97.6 0.00014 4.7E-09 73.2 9.3 117 9-139 1-143 (206)
217 3ohm_A Guanine nucleotide-bind 97.6 5.3E-05 1.8E-09 83.1 6.4 84 58-141 151-249 (327)
218 4fid_A G protein alpha subunit 97.6 3.9E-05 1.3E-09 84.5 4.7 83 58-140 145-242 (340)
219 1azs_C GS-alpha; complex (lyas 97.5 7.2E-05 2.5E-09 84.2 5.9 80 61-140 204-298 (402)
220 1tq4_A IIGP1, interferon-induc 97.5 0.00019 6.3E-09 81.2 8.4 115 10-141 70-190 (413)
221 1zu4_A FTSY; GTPase, signal re 97.4 0.00022 7.6E-09 78.0 8.6 121 8-139 104-267 (320)
222 1f5n_A Interferon-induced guan 97.4 8.1E-05 2.8E-09 87.7 5.0 104 7-122 36-145 (592)
223 3cwq_A Para family chromosome 97.3 9.7E-05 3.3E-09 75.6 4.0 121 11-140 2-134 (209)
224 3e70_C DPA, signal recognition 97.3 0.00034 1.2E-08 76.7 7.8 124 8-139 128-281 (328)
225 2ph1_A Nucleotide-binding prot 97.3 0.0013 4.4E-08 69.4 11.8 67 72-138 127-194 (262)
226 3szr_A Interferon-induced GTP- 97.2 0.00052 1.8E-08 81.5 9.0 68 74-141 147-229 (608)
227 2yhs_A FTSY, cell division pro 97.2 0.00059 2E-08 78.4 8.6 123 9-139 293-451 (503)
228 2ffh_A Protein (FFH); SRP54, s 97.1 0.001 3.5E-08 75.4 9.6 123 8-139 97-250 (425)
229 2xtz_A Guanine nucleotide-bind 97.1 0.00018 6.2E-09 79.8 3.4 69 72-140 181-264 (354)
230 1puj_A YLQF, conserved hypothe 97.1 0.00039 1.3E-08 74.7 5.1 59 8-86 119-177 (282)
231 1vma_A Cell division protein F 97.0 0.0009 3.1E-08 72.7 7.7 123 8-139 103-262 (306)
232 1rj9_A FTSY, signal recognitio 97.0 0.0016 5.4E-08 70.7 9.0 124 8-139 101-260 (304)
233 3e1y_E Eukaryotic peptide chai 96.9 0.0013 4.6E-08 67.1 7.4 67 439-522 20-89 (204)
234 1ls1_A Signal recognition part 96.8 0.0018 6E-08 70.0 7.5 121 8-139 97-250 (295)
235 3end_A Light-independent proto 96.8 0.0013 4.4E-08 70.9 6.5 65 73-138 156-225 (307)
236 2px0_A Flagellar biosynthesis 96.8 0.0023 8E-08 69.0 8.5 120 8-139 104-252 (296)
237 1hyq_A MIND, cell division inh 96.8 0.0041 1.4E-07 65.1 10.1 65 73-139 110-175 (263)
238 3cnl_A YLQF, putative uncharac 96.8 0.00054 1.9E-08 72.7 3.3 58 10-87 100-157 (262)
239 3ea0_A ATPase, para family; al 96.7 0.0054 1.9E-07 63.2 10.2 65 73-139 118-185 (245)
240 1g3q_A MIND ATPase, cell divis 96.7 0.0086 2.9E-07 61.5 11.5 66 73-140 111-177 (237)
241 3kjh_A CO dehydrogenase/acetyl 96.7 0.0019 6.5E-08 66.6 6.5 65 72-138 130-195 (254)
242 3k9g_A PF-32 protein; ssgcid, 96.7 0.0019 6.6E-08 67.9 6.5 65 73-139 144-210 (267)
243 2oze_A ORF delta'; para, walke 96.6 0.0035 1.2E-07 67.1 8.4 65 73-139 154-225 (298)
244 3q9l_A Septum site-determining 96.6 0.0043 1.5E-07 64.6 8.9 65 73-139 113-186 (260)
245 1u0l_A Probable GTPase ENGC; p 96.6 0.00079 2.7E-08 72.8 2.7 64 75-140 64-129 (301)
246 1puj_A YLQF, conserved hypothe 96.3 0.0035 1.2E-07 67.2 5.9 61 78-140 3-64 (282)
247 3b9q_A Chloroplast SRP recepto 95.9 0.022 7.6E-07 61.5 9.8 122 9-139 100-259 (302)
248 2xj4_A MIPZ; replication, cell 95.7 0.0029 9.9E-08 67.6 1.5 34 73-108 103-136 (286)
249 3ec1_A YQEH GTPase; atnos1, at 95.6 0.017 5.8E-07 64.2 7.5 63 76-141 51-113 (369)
250 3q5d_A Atlastin-1; G protein, 95.5 0.038 1.3E-06 62.9 9.9 27 6-32 64-90 (447)
251 1nij_A Hypothetical protein YJ 95.3 0.026 8.9E-07 61.3 7.7 25 8-32 3-27 (318)
252 2og2_A Putative signal recogni 95.3 0.034 1.2E-06 61.6 8.4 123 9-139 157-316 (359)
253 3cnl_A YLQF, putative uncharac 95.1 0.0065 2.2E-07 64.3 2.1 56 81-140 4-60 (262)
254 1cp2_A CP2, nitrogenase iron p 94.8 0.05 1.7E-06 56.9 7.8 66 73-138 115-186 (269)
255 3l82_B F-box only protein 4; T 94.8 0.031 1.1E-06 57.2 5.7 77 75-154 97-188 (227)
256 3h2y_A GTPase family protein; 94.7 0.037 1.3E-06 61.5 6.7 57 83-141 55-111 (368)
257 2yv5_A YJEQ protein; hydrolase 94.5 0.012 4.1E-07 63.6 2.0 57 84-140 66-124 (302)
258 2afh_E Nitrogenase iron protei 94.5 0.054 1.8E-06 57.6 7.1 66 73-138 118-189 (289)
259 1bif_A 6-phosphofructo-2-kinas 93.2 0.056 1.9E-06 61.9 4.5 104 9-130 39-153 (469)
260 3l2o_B F-box only protein 4; s 93.0 0.12 4.2E-06 55.2 6.4 70 82-154 195-273 (312)
261 1t9h_A YLOQ, probable GTPase E 92.9 0.026 9E-07 61.1 1.2 23 10-32 174-196 (307)
262 3bfv_A CAPA1, CAPB2, membrane 92.9 0.11 3.7E-06 55.1 5.9 67 73-140 191-258 (271)
263 2yv5_A YJEQ protein; hydrolase 92.9 0.11 3.8E-06 55.9 6.1 22 10-32 166-187 (302)
264 1ye8_A Protein THEP1, hypothet 92.8 0.058 2E-06 53.5 3.4 23 10-32 1-23 (178)
265 1lvg_A Guanylate kinase, GMP k 92.7 0.052 1.8E-06 54.6 3.0 23 10-32 5-27 (198)
266 1kgd_A CASK, peripheral plasma 92.6 0.072 2.5E-06 52.5 3.8 23 10-32 6-28 (180)
267 3kb2_A SPBC2 prophage-derived 92.4 0.073 2.5E-06 51.2 3.5 24 9-32 1-24 (173)
268 3la6_A Tyrosine-protein kinase 92.4 0.15 5.2E-06 54.5 6.3 66 73-139 201-267 (286)
269 3a00_A Guanylate kinase, GMP k 92.3 0.06 2E-06 53.3 2.9 23 10-32 2-24 (186)
270 3fgn_A Dethiobiotin synthetase 92.3 0.44 1.5E-05 49.9 9.6 65 73-137 126-197 (251)
271 1knq_A Gluconate kinase; ALFA/ 92.1 0.11 3.8E-06 50.4 4.4 26 7-32 6-31 (175)
272 3cio_A ETK, tyrosine-protein k 91.9 0.23 7.8E-06 53.3 7.0 66 73-139 213-279 (299)
273 3fkq_A NTRC-like two-domain pr 91.9 0.15 5.2E-06 56.4 5.7 35 73-109 259-293 (373)
274 3tr0_A Guanylate kinase, GMP k 91.8 0.088 3E-06 52.4 3.4 23 10-32 8-30 (205)
275 1wcv_1 SOJ, segregation protei 91.8 0.22 7.6E-06 51.8 6.6 66 72-139 110-182 (257)
276 3zvl_A Bifunctional polynucleo 91.7 0.29 9.9E-06 55.1 7.8 25 8-32 257-281 (416)
277 3asz_A Uridine kinase; cytidin 91.6 0.12 4.1E-06 51.9 4.1 25 8-32 5-29 (211)
278 1znw_A Guanylate kinase, GMP k 91.5 0.092 3.1E-06 52.9 3.2 23 10-32 21-43 (207)
279 1xjc_A MOBB protein homolog; s 91.4 0.12 4E-06 51.0 3.6 25 8-32 3-27 (169)
280 1zp6_A Hypothetical protein AT 91.4 0.1 3.5E-06 51.3 3.3 24 9-32 9-32 (191)
281 1t9h_A YLOQ, probable GTPase E 91.3 0.11 3.9E-06 56.1 3.7 49 93-141 82-132 (307)
282 2if2_A Dephospho-COA kinase; a 91.2 0.13 4.3E-06 51.4 3.8 22 10-31 2-23 (204)
283 1kag_A SKI, shikimate kinase I 91.1 0.12 4.1E-06 50.0 3.4 23 10-32 5-27 (173)
284 1nks_A Adenylate kinase; therm 91.1 0.14 4.9E-06 50.0 4.0 24 9-32 1-24 (194)
285 1z6g_A Guanylate kinase; struc 91.0 0.11 3.8E-06 53.0 3.2 23 10-32 24-46 (218)
286 2f1r_A Molybdopterin-guanine d 91.0 0.081 2.8E-06 52.2 2.1 24 9-32 2-25 (171)
287 3ney_A 55 kDa erythrocyte memb 91.0 0.15 5.1E-06 51.6 4.0 25 8-32 18-42 (197)
288 3c8u_A Fructokinase; YP_612366 90.9 0.12 4.3E-06 51.9 3.5 25 8-32 21-45 (208)
289 3lw7_A Adenylate kinase relate 90.8 0.14 4.8E-06 48.9 3.6 22 10-32 2-23 (179)
290 3tau_A Guanylate kinase, GMP k 90.8 0.13 4.4E-06 52.0 3.4 24 9-32 8-31 (208)
291 1ex7_A Guanylate kinase; subst 90.7 0.12 4.2E-06 51.7 3.1 23 10-32 2-24 (186)
292 1np6_A Molybdopterin-guanine d 90.7 0.15 5.2E-06 50.4 3.8 25 8-32 5-29 (174)
293 2j41_A Guanylate kinase; GMP, 90.7 0.14 4.6E-06 51.0 3.5 23 10-32 7-29 (207)
294 3vaa_A Shikimate kinase, SK; s 90.6 0.15 5.2E-06 50.9 3.8 25 8-32 24-48 (199)
295 1s96_A Guanylate kinase, GMP k 90.6 0.14 4.7E-06 52.6 3.4 23 10-32 17-39 (219)
296 1htw_A HI0065; nucleotide-bind 90.6 0.14 4.6E-06 49.9 3.2 23 10-32 34-56 (158)
297 3iij_A Coilin-interacting nucl 90.4 0.17 5.9E-06 49.3 3.9 26 7-32 9-34 (180)
298 1ukz_A Uridylate kinase; trans 90.2 0.23 7.9E-06 49.4 4.7 28 5-32 11-38 (203)
299 4eun_A Thermoresistant glucoki 90.2 0.15 5E-06 51.0 3.2 24 9-32 29-52 (200)
300 3t61_A Gluconokinase; PSI-biol 90.1 0.17 5.8E-06 50.5 3.6 24 9-32 18-41 (202)
301 3umf_A Adenylate kinase; rossm 90.0 0.2 6.9E-06 51.3 4.0 29 4-32 24-52 (217)
302 2bdt_A BH3686; alpha-beta prot 89.9 0.18 6.1E-06 49.6 3.6 23 10-32 3-25 (189)
303 2qor_A Guanylate kinase; phosp 89.7 0.16 5.5E-06 50.9 3.1 25 8-32 11-35 (204)
304 3trf_A Shikimate kinase, SK; a 89.7 0.2 6.8E-06 49.0 3.7 24 9-32 5-28 (185)
305 2qi9_C Vitamin B12 import ATP- 89.6 0.2 6.8E-06 52.5 3.8 21 10-30 27-47 (249)
306 4gp7_A Metallophosphoesterase; 89.6 0.16 5.4E-06 49.6 2.8 21 10-30 10-30 (171)
307 4g1u_C Hemin import ATP-bindin 89.6 0.23 7.9E-06 52.5 4.3 22 10-31 38-59 (266)
308 1ly1_A Polynucleotide kinase; 89.5 0.2 6.9E-06 48.4 3.5 22 10-31 3-24 (181)
309 1mv5_A LMRA, multidrug resista 89.4 0.27 9.1E-06 51.1 4.6 22 10-31 29-50 (243)
310 1jjv_A Dephospho-COA kinase; P 89.4 0.19 6.5E-06 50.2 3.3 22 10-31 3-24 (206)
311 1uf9_A TT1252 protein; P-loop, 89.4 0.25 8.7E-06 48.8 4.2 26 7-32 6-31 (203)
312 1cke_A CK, MSSA, protein (cyti 89.3 0.21 7.2E-06 50.5 3.6 23 10-32 6-28 (227)
313 1via_A Shikimate kinase; struc 89.2 0.19 6.6E-06 48.8 3.1 24 9-32 4-27 (175)
314 4fcw_A Chaperone protein CLPB; 89.1 0.58 2E-05 49.6 7.1 23 10-32 48-70 (311)
315 3pfi_A Holliday junction ATP-d 89.0 0.87 3E-05 49.0 8.5 26 7-32 53-78 (338)
316 3tif_A Uncharacterized ABC tra 89.0 0.15 5E-06 52.9 2.2 22 10-31 32-53 (235)
317 3ec2_A DNA replication protein 89.0 0.19 6.6E-06 49.0 3.0 24 9-32 38-61 (180)
318 2jaq_A Deoxyguanosine kinase; 88.9 0.23 8E-06 49.0 3.6 22 11-32 2-23 (205)
319 1sxj_A Activator 1 95 kDa subu 88.9 1.5 5.1E-05 50.6 10.9 25 8-32 76-100 (516)
320 2pcj_A ABC transporter, lipopr 88.9 0.16 5.6E-06 52.1 2.4 20 11-30 32-51 (224)
321 2bbw_A Adenylate kinase 4, AK4 88.8 0.23 7.8E-06 51.3 3.5 24 9-32 27-50 (246)
322 2qt1_A Nicotinamide riboside k 88.7 0.32 1.1E-05 48.6 4.4 26 7-32 19-44 (207)
323 1qhx_A CPT, protein (chloramph 88.6 0.26 8.9E-06 47.7 3.6 23 10-32 4-26 (178)
324 1y63_A LMAJ004144AAA protein; 88.6 0.31 1.1E-05 47.9 4.2 25 8-32 9-33 (184)
325 2eyu_A Twitching motility prot 88.4 0.25 8.4E-06 52.1 3.5 23 10-32 26-48 (261)
326 2onk_A Molybdate/tungstate ABC 88.4 0.23 7.8E-06 51.7 3.1 23 10-32 25-47 (240)
327 3uie_A Adenylyl-sulfate kinase 88.3 0.28 9.7E-06 48.9 3.7 24 9-32 25-48 (200)
328 2c95_A Adenylate kinase 1; tra 88.3 0.33 1.1E-05 47.6 4.2 25 8-32 8-32 (196)
329 1zuh_A Shikimate kinase; alpha 88.2 0.27 9.4E-06 47.3 3.4 26 7-32 5-30 (168)
330 1qf9_A UMP/CMP kinase, protein 88.1 0.42 1.4E-05 46.6 4.8 24 9-32 6-29 (194)
331 2jeo_A Uridine-cytidine kinase 88.1 0.25 8.4E-06 51.1 3.2 23 10-32 26-48 (245)
332 2v9p_A Replication protein E1; 88.0 0.26 8.8E-06 53.2 3.4 24 10-33 127-150 (305)
333 3aez_A Pantothenate kinase; tr 88.0 0.32 1.1E-05 52.6 4.1 26 7-32 88-113 (312)
334 2rhm_A Putative kinase; P-loop 88.0 0.33 1.1E-05 47.5 4.0 24 9-32 5-28 (193)
335 1kht_A Adenylate kinase; phosp 88.0 0.29 1E-05 47.7 3.6 23 10-32 4-26 (192)
336 4ido_A Atlastin-1; GTPase, GTP 88.0 1.4 4.9E-05 49.9 9.5 80 6-87 64-153 (457)
337 3dl0_A Adenylate kinase; phosp 88.0 0.32 1.1E-05 48.9 3.9 22 11-32 2-23 (216)
338 1rz3_A Hypothetical protein rb 88.0 0.38 1.3E-05 48.1 4.4 26 7-32 20-45 (201)
339 4a74_A DNA repair and recombin 87.9 0.29 9.8E-06 49.4 3.5 23 10-32 26-48 (231)
340 1sxj_E Activator 1 40 kDa subu 87.9 2.2 7.7E-05 45.9 10.9 26 7-32 34-59 (354)
341 3lnc_A Guanylate kinase, GMP k 87.9 0.18 6.3E-06 51.5 2.0 23 10-32 28-51 (231)
342 3tqc_A Pantothenate kinase; bi 87.8 0.38 1.3E-05 52.3 4.6 27 6-32 89-115 (321)
343 1zd8_A GTP:AMP phosphotransfer 87.8 0.37 1.3E-05 49.0 4.3 26 7-32 5-30 (227)
344 3b85_A Phosphate starvation-in 87.7 0.21 7.3E-06 50.7 2.4 22 11-32 24-45 (208)
345 2i3b_A HCR-ntpase, human cance 87.7 0.27 9.2E-06 49.2 3.0 22 11-32 3-24 (189)
346 3cm0_A Adenylate kinase; ATP-b 87.6 0.33 1.1E-05 47.4 3.7 24 9-32 4-27 (186)
347 2cbz_A Multidrug resistance-as 87.6 0.22 7.4E-06 51.7 2.4 22 10-31 32-53 (237)
348 1b0u_A Histidine permease; ABC 87.6 0.2 6.8E-06 52.8 2.1 22 10-31 33-54 (262)
349 1uj2_A Uridine-cytidine kinase 87.6 0.37 1.3E-05 50.0 4.2 26 7-32 20-45 (252)
350 3fb4_A Adenylate kinase; psych 87.6 0.31 1.1E-05 48.9 3.6 22 11-32 2-23 (216)
351 1ihu_A Arsenical pump-driving 87.6 0.8 2.7E-05 53.8 7.5 130 1-137 1-238 (589)
352 2d2e_A SUFC protein; ABC-ATPas 87.5 0.26 8.7E-06 51.5 2.9 22 10-31 30-51 (250)
353 2rcn_A Probable GTPase ENGC; Y 87.5 1.6 5.3E-05 48.2 9.3 44 95-140 128-174 (358)
354 1zak_A Adenylate kinase; ATP:A 87.4 0.35 1.2E-05 48.9 3.8 25 8-32 4-28 (222)
355 2pze_A Cystic fibrosis transme 87.4 0.22 7.7E-06 51.2 2.4 22 10-31 35-56 (229)
356 1g6h_A High-affinity branched- 87.4 0.22 7.6E-06 52.2 2.4 22 10-31 34-55 (257)
357 2ze6_A Isopentenyl transferase 87.4 0.34 1.2E-05 50.6 3.7 23 10-32 2-24 (253)
358 2chg_A Replication factor C sm 87.3 1.5 5.2E-05 43.0 8.5 24 9-32 38-61 (226)
359 3gfo_A Cobalt import ATP-bindi 87.3 0.21 7.2E-06 53.1 2.1 21 11-31 36-56 (275)
360 1tev_A UMP-CMP kinase; ploop, 87.3 0.36 1.2E-05 47.2 3.7 23 10-32 4-26 (196)
361 1aky_A Adenylate kinase; ATP:A 87.3 0.36 1.2E-05 48.8 3.8 25 8-32 3-27 (220)
362 2ff7_A Alpha-hemolysin translo 87.2 0.24 8.1E-06 51.7 2.4 22 10-31 36-57 (247)
363 1sgw_A Putative ABC transporte 87.2 0.22 7.6E-06 50.8 2.1 21 11-31 37-57 (214)
364 1ji0_A ABC transporter; ATP bi 87.1 0.22 7.6E-06 51.6 2.2 22 10-31 33-54 (240)
365 1sq5_A Pantothenate kinase; P- 87.1 0.43 1.5E-05 51.3 4.5 26 7-32 78-103 (308)
366 2bwj_A Adenylate kinase 5; pho 87.1 0.39 1.3E-05 47.2 3.8 23 10-32 13-35 (199)
367 2plr_A DTMP kinase, probable t 87.0 0.37 1.3E-05 47.8 3.7 23 10-32 5-27 (213)
368 1gtv_A TMK, thymidylate kinase 87.0 0.21 7.3E-06 49.9 1.8 22 11-32 2-23 (214)
369 2ehv_A Hypothetical protein PH 87.0 0.32 1.1E-05 49.7 3.2 23 10-32 31-53 (251)
370 2ghi_A Transport protein; mult 86.9 0.25 8.5E-06 52.0 2.4 22 10-31 47-68 (260)
371 2yvu_A Probable adenylyl-sulfa 86.9 0.48 1.7E-05 46.4 4.4 25 8-32 12-36 (186)
372 1e6c_A Shikimate kinase; phosp 86.9 0.33 1.1E-05 46.7 3.1 23 10-32 3-25 (173)
373 1odf_A YGR205W, hypothetical 3 86.8 0.42 1.4E-05 51.2 4.1 26 7-32 29-54 (290)
374 2v1u_A Cell division control p 86.8 1.2 4.2E-05 48.2 8.1 26 7-32 42-67 (387)
375 2zu0_C Probable ATP-dependent 86.8 0.28 9.4E-06 51.9 2.7 22 10-31 47-68 (267)
376 1hqc_A RUVB; extended AAA-ATPa 86.7 1.3 4.5E-05 47.1 8.0 24 9-32 38-61 (324)
377 2v54_A DTMP kinase, thymidylat 86.6 0.37 1.3E-05 47.7 3.4 24 9-32 4-27 (204)
378 2vli_A Antibiotic resistance p 86.6 0.3 1E-05 47.5 2.6 25 8-32 4-28 (183)
379 2olj_A Amino acid ABC transpor 86.6 0.26 9E-06 51.9 2.4 22 10-31 51-72 (263)
380 2wwf_A Thymidilate kinase, put 86.5 0.55 1.9E-05 46.7 4.6 24 9-32 10-33 (212)
381 1vpl_A ABC transporter, ATP-bi 86.4 0.27 9.4E-06 51.6 2.4 22 10-31 42-63 (256)
382 1ak2_A Adenylate kinase isoenz 86.4 0.45 1.5E-05 48.7 3.9 26 7-32 14-39 (233)
383 4e22_A Cytidylate kinase; P-lo 86.3 0.49 1.7E-05 49.2 4.2 24 9-32 27-50 (252)
384 2pbr_A DTMP kinase, thymidylat 86.2 0.43 1.5E-05 46.6 3.6 22 11-32 2-23 (195)
385 2ixe_A Antigen peptide transpo 86.2 0.28 9.7E-06 51.9 2.4 22 10-31 46-67 (271)
386 1xe1_A Hypothetical protein PF 86.2 1.2 4.1E-05 40.8 6.2 48 440-506 50-97 (116)
387 2rcn_A Probable GTPase ENGC; Y 86.2 0.36 1.2E-05 53.3 3.2 23 10-32 216-238 (358)
388 2cdn_A Adenylate kinase; phosp 86.0 0.52 1.8E-05 46.8 4.2 25 8-32 19-43 (201)
389 2yz2_A Putative ABC transporte 85.9 0.3 1E-05 51.5 2.4 22 10-31 34-55 (266)
390 2ihy_A ABC transporter, ATP-bi 85.9 0.3 1E-05 52.0 2.4 21 11-31 49-69 (279)
391 2gza_A Type IV secretion syste 85.8 0.33 1.1E-05 53.6 2.7 23 10-32 176-198 (361)
392 3kta_A Chromosome segregation 85.8 0.45 1.5E-05 46.3 3.5 22 11-32 28-49 (182)
393 2nq2_C Hypothetical ABC transp 85.8 0.28 9.7E-06 51.4 2.1 21 11-31 33-53 (253)
394 1nn5_A Similar to deoxythymidy 85.8 0.56 1.9E-05 46.7 4.3 24 9-32 9-32 (215)
395 2f6r_A COA synthase, bifunctio 85.6 0.52 1.8E-05 50.0 4.1 26 6-31 72-97 (281)
396 3jvv_A Twitching mobility prot 85.6 0.43 1.5E-05 52.6 3.5 23 10-32 124-146 (356)
397 3a4m_A L-seryl-tRNA(SEC) kinas 85.5 0.5 1.7E-05 49.3 3.9 25 8-32 3-27 (260)
398 1jbk_A CLPB protein; beta barr 85.5 0.49 1.7E-05 45.4 3.6 25 8-32 42-66 (195)
399 2pt5_A Shikimate kinase, SK; a 85.5 0.48 1.6E-05 45.3 3.4 22 11-32 2-23 (168)
400 2kjq_A DNAA-related protein; s 85.5 0.32 1.1E-05 46.6 2.1 23 10-32 37-59 (149)
401 3hr8_A Protein RECA; alpha and 85.5 1.8 6.2E-05 47.6 8.4 23 10-32 62-84 (356)
402 1e4v_A Adenylate kinase; trans 85.4 0.53 1.8E-05 47.4 3.8 22 11-32 2-23 (214)
403 2iyv_A Shikimate kinase, SK; t 85.4 0.42 1.4E-05 46.6 3.0 23 10-32 3-25 (184)
404 3fvq_A Fe(3+) IONS import ATP- 85.3 0.39 1.3E-05 53.1 3.0 23 10-32 31-53 (359)
405 2vhj_A Ntpase P4, P4; non- hyd 85.3 0.66 2.2E-05 50.4 4.7 23 10-32 124-146 (331)
406 3tlx_A Adenylate kinase 2; str 85.3 0.57 1.9E-05 48.5 4.1 25 8-32 28-52 (243)
407 1lw7_A Transcriptional regulat 85.2 0.42 1.4E-05 52.6 3.2 24 9-32 170-193 (365)
408 2z0h_A DTMP kinase, thymidylat 85.1 0.48 1.6E-05 46.5 3.3 22 11-32 2-23 (197)
409 2pt7_A CAG-ALFA; ATPase, prote 84.9 0.32 1.1E-05 53.0 2.1 23 10-32 172-194 (330)
410 2ewv_A Twitching motility prot 84.8 0.46 1.6E-05 52.6 3.4 23 10-32 137-159 (372)
411 2bbs_A Cystic fibrosis transme 84.8 0.39 1.3E-05 51.4 2.7 22 10-31 65-86 (290)
412 3be4_A Adenylate kinase; malar 84.7 0.57 2E-05 47.3 3.7 25 8-32 4-28 (217)
413 2zr9_A Protein RECA, recombina 84.7 1.1 3.9E-05 49.0 6.4 23 10-32 62-84 (349)
414 2pez_A Bifunctional 3'-phospho 84.6 0.56 1.9E-05 45.6 3.5 24 9-32 5-28 (179)
415 3sr0_A Adenylate kinase; phosp 84.6 0.5 1.7E-05 47.9 3.2 22 11-32 2-23 (206)
416 2pjz_A Hypothetical protein ST 84.5 0.38 1.3E-05 50.7 2.4 21 11-31 32-52 (263)
417 1q3t_A Cytidylate kinase; nucl 84.3 0.62 2.1E-05 47.7 3.8 28 5-32 12-39 (236)
418 3tui_C Methionine import ATP-b 84.0 0.44 1.5E-05 52.7 2.7 23 10-32 55-77 (366)
419 1z47_A CYSA, putative ABC-tran 84.0 0.44 1.5E-05 52.5 2.7 22 11-32 43-64 (355)
420 2yyz_A Sugar ABC transporter, 84.0 0.44 1.5E-05 52.6 2.7 23 10-32 30-52 (359)
421 3nh6_A ATP-binding cassette SU 83.9 0.3 1E-05 52.7 1.3 23 10-32 81-103 (306)
422 1ixz_A ATP-dependent metallopr 83.8 0.6 2E-05 48.2 3.5 23 10-32 50-72 (254)
423 1byi_A Dethiobiotin synthase; 83.8 1.4 4.7E-05 44.3 6.1 67 73-139 108-180 (224)
424 2oap_1 GSPE-2, type II secreti 83.8 0.42 1.4E-05 55.4 2.4 23 10-32 261-283 (511)
425 2it1_A 362AA long hypothetical 83.7 0.46 1.6E-05 52.5 2.7 23 10-32 30-52 (362)
426 1vht_A Dephospho-COA kinase; s 83.6 0.72 2.5E-05 46.4 3.9 22 10-31 5-26 (218)
427 1gvn_B Zeta; postsegregational 83.6 0.64 2.2E-05 49.5 3.7 25 8-32 32-56 (287)
428 1g29_1 MALK, maltose transport 83.4 0.48 1.6E-05 52.6 2.7 23 10-32 30-52 (372)
429 3rlf_A Maltose/maltodextrin im 83.4 0.48 1.6E-05 52.7 2.7 23 10-32 30-52 (381)
430 1v43_A Sugar-binding transport 83.3 0.49 1.7E-05 52.5 2.7 23 10-32 38-60 (372)
431 4a1f_A DNAB helicase, replicat 83.3 2.4 8.2E-05 46.3 8.1 23 10-32 47-69 (338)
432 1u0l_A Probable GTPase ENGC; p 83.2 0.56 1.9E-05 50.3 3.1 23 10-32 170-192 (301)
433 2w0m_A SSO2452; RECA, SSPF, un 83.0 0.71 2.4E-05 46.3 3.6 23 10-32 24-46 (235)
434 2x8a_A Nuclear valosin-contain 82.9 0.71 2.4E-05 48.8 3.7 23 10-32 45-67 (274)
435 3nwj_A ATSK2; P loop, shikimat 82.7 0.61 2.1E-05 48.8 3.0 23 10-32 49-71 (250)
436 2xb4_A Adenylate kinase; ATP-b 82.7 0.73 2.5E-05 46.8 3.6 22 11-32 2-23 (223)
437 1p9r_A General secretion pathw 82.5 0.69 2.3E-05 52.1 3.5 23 10-32 168-190 (418)
438 3gd7_A Fusion complex of cysti 82.4 0.6 2E-05 52.1 3.0 23 10-32 48-70 (390)
439 1m7g_A Adenylylsulfate kinase; 82.4 0.8 2.7E-05 46.0 3.7 24 9-32 25-48 (211)
440 2grj_A Dephospho-COA kinase; T 82.4 0.81 2.8E-05 45.7 3.7 25 8-32 11-35 (192)
441 2w58_A DNAI, primosome compone 82.4 0.79 2.7E-05 45.4 3.6 23 10-32 55-77 (202)
442 1u94_A RECA protein, recombina 82.4 2.3 7.7E-05 46.8 7.6 23 10-32 64-86 (356)
443 3d31_A Sulfate/molybdate ABC t 82.3 0.42 1.5E-05 52.5 1.7 23 10-32 27-49 (348)
444 2p65_A Hypothetical protein PF 82.1 0.65 2.2E-05 44.6 2.8 25 8-32 42-66 (187)
445 1iy2_A ATP-dependent metallopr 82.0 0.78 2.7E-05 48.2 3.6 23 10-32 74-96 (278)
446 2vp4_A Deoxynucleoside kinase; 82.0 0.67 2.3E-05 47.4 3.0 25 8-32 19-43 (230)
447 1f2t_A RAD50 ABC-ATPase; DNA d 81.9 0.77 2.6E-05 43.8 3.2 22 11-32 25-46 (149)
448 3bos_A Putative DNA replicatio 81.9 0.81 2.8E-05 46.0 3.5 25 8-32 51-75 (242)
449 2b8t_A Thymidine kinase; deoxy 81.9 0.93 3.2E-05 46.6 3.9 43 99-141 89-131 (223)
450 2p5t_B PEZT; postsegregational 81.7 0.62 2.1E-05 48.4 2.6 25 8-32 31-55 (253)
451 2npi_A Protein CLP1; CLP1-PCF1 81.2 0.8 2.7E-05 52.3 3.5 23 10-32 139-161 (460)
452 1xp8_A RECA protein, recombina 81.2 2.4 8.2E-05 46.8 7.2 23 10-32 75-97 (366)
453 1lv7_A FTSH; alpha/beta domain 80.9 0.91 3.1E-05 46.9 3.6 24 9-32 45-68 (257)
454 1in4_A RUVB, holliday junction 80.9 0.84 2.9E-05 49.5 3.4 24 9-32 51-74 (334)
455 1oxx_K GLCV, glucose, ABC tran 80.9 0.42 1.4E-05 52.6 1.0 23 10-32 32-54 (353)
456 1cr0_A DNA primase/helicase; R 80.7 0.92 3.2E-05 48.0 3.6 23 10-32 36-58 (296)
457 4eaq_A DTMP kinase, thymidylat 80.7 1.2 4E-05 45.7 4.3 25 8-32 25-49 (229)
458 3u61_B DNA polymerase accessor 80.7 6.6 0.00022 41.7 10.4 24 9-32 47-71 (324)
459 3ake_A Cytidylate kinase; CMP 80.6 0.98 3.4E-05 44.6 3.6 22 11-32 4-25 (208)
460 3co5_A Putative two-component 80.4 1.7 5.8E-05 40.8 4.9 24 9-32 27-50 (143)
461 1q57_A DNA primase/helicase; d 80.4 0.68 2.3E-05 53.2 2.6 23 10-32 243-265 (503)
462 2cvh_A DNA repair and recombin 80.1 0.93 3.2E-05 45.2 3.2 22 10-31 21-42 (220)
463 1xwi_A SKD1 protein; VPS4B, AA 80.0 3.3 0.00011 44.6 7.8 25 8-32 44-68 (322)
464 3r20_A Cytidylate kinase; stru 79.7 1.1 3.8E-05 46.3 3.6 24 9-32 9-32 (233)
465 1svm_A Large T antigen; AAA+ f 79.6 0.99 3.4E-05 50.1 3.5 24 9-32 169-192 (377)
466 3pg5_A Uncharacterized protein 79.3 1.8 6.2E-05 47.5 5.5 35 73-109 153-187 (361)
467 3euj_A Chromosome partition pr 79.0 0.96 3.3E-05 51.9 3.2 23 10-32 30-52 (483)
468 2obl_A ESCN; ATPase, hydrolase 78.9 1.2 4.1E-05 48.9 3.8 22 11-32 73-94 (347)
469 1n0w_A DNA repair protein RAD5 78.8 1.1 3.9E-05 45.3 3.4 23 10-32 25-47 (243)
470 1ltq_A Polynucleotide kinase; 78.8 1.1 3.9E-05 47.3 3.5 23 10-32 3-25 (301)
471 2zan_A Vacuolar protein sortin 78.8 7.2 0.00025 44.0 10.4 25 8-32 166-190 (444)
472 3d3q_A TRNA delta(2)-isopenten 78.1 1.3 4.4E-05 48.5 3.7 23 10-32 8-30 (340)
473 3qf7_A RAD50; ABC-ATPase, ATPa 77.9 1.1 3.9E-05 49.3 3.3 22 11-32 25-46 (365)
474 1nlf_A Regulatory protein REPA 77.5 1.4 4.7E-05 46.3 3.7 23 10-32 31-53 (279)
475 3io5_A Recombination and repai 77.5 4.3 0.00015 44.0 7.5 21 12-32 31-51 (333)
476 3t15_A Ribulose bisphosphate c 77.4 2 6.9E-05 45.6 5.0 26 7-32 34-59 (293)
477 3ez9_A Para; DNA binding, wing 77.3 2 6.8E-05 47.8 5.1 64 73-138 247-322 (403)
478 3a8t_A Adenylate isopentenyltr 77.3 1.4 4.9E-05 48.1 3.8 23 10-32 41-63 (339)
479 2ga8_A Hypothetical 39.9 kDa p 77.1 1.7 5.6E-05 47.9 4.2 26 7-32 22-47 (359)
480 2dpy_A FLII, flagellum-specifi 76.8 1.4 5E-05 49.8 3.8 23 10-32 158-180 (438)
481 1njg_A DNA polymerase III subu 76.8 1.5 5E-05 43.6 3.5 23 10-32 46-68 (250)
482 3crm_A TRNA delta(2)-isopenten 76.8 1.6 5.4E-05 47.4 3.9 23 10-32 6-28 (323)
483 2ocp_A DGK, deoxyguanosine kin 76.8 1.8 6E-05 44.3 4.2 24 9-32 2-25 (241)
484 3syl_A Protein CBBX; photosynt 76.6 1.9 6.6E-05 45.5 4.6 26 7-32 65-90 (309)
485 3vfd_A Spastin; ATPase, microt 76.6 8.8 0.0003 42.2 10.1 24 9-32 148-171 (389)
486 1a7j_A Phosphoribulokinase; tr 76.4 0.79 2.7E-05 48.9 1.4 25 8-32 4-28 (290)
487 2qz4_A Paraplegin; AAA+, SPG7, 76.4 1.5 5E-05 45.1 3.4 26 7-32 37-62 (262)
488 1r6b_X CLPA protein; AAA+, N-t 76.2 7.8 0.00027 46.7 10.3 92 9-124 488-582 (758)
489 3b60_A Lipid A export ATP-bind 76.1 1.1 3.7E-05 52.6 2.7 23 10-32 370-392 (582)
490 3pvs_A Replication-associated 76.0 6.9 0.00024 44.3 9.2 25 8-32 49-73 (447)
491 2orw_A Thymidine kinase; TMTK, 75.9 6.7 0.00023 38.5 8.0 39 99-137 76-114 (184)
492 3b5x_A Lipid A export ATP-bind 75.9 1.2 4.1E-05 52.3 2.9 23 10-32 370-392 (582)
493 1p5z_B DCK, deoxycytidine kina 75.8 0.96 3.3E-05 47.1 1.9 26 7-32 22-47 (263)
494 3h4m_A Proteasome-activating n 75.6 1.7 5.8E-05 45.4 3.7 26 7-32 49-74 (285)
495 1fnn_A CDC6P, cell division co 75.6 1.5 5.3E-05 47.6 3.6 24 9-32 44-67 (389)
496 3foz_A TRNA delta(2)-isopenten 75.4 2 6.8E-05 46.4 4.2 24 9-32 10-33 (316)
497 1yqt_A RNAse L inhibitor; ATP- 75.3 1.3 4.3E-05 51.6 2.9 23 10-32 48-70 (538)
498 3b9p_A CG5977-PA, isoform A; A 75.1 1.6 5.4E-05 46.0 3.4 24 9-32 54-77 (297)
499 1tue_A Replication protein E1; 74.7 1.3 4.6E-05 44.9 2.5 23 10-32 59-81 (212)
500 3cf0_A Transitional endoplasmi 74.5 1.7 5.9E-05 46.2 3.5 25 8-32 48-72 (301)
No 1
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=100.00 E-value=1.4e-112 Score=1048.07 Aligned_cols=666 Identities=35% Similarity=0.621 Sum_probs=566.2
Q ss_pred CCCCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEc------------
Q 047363 5 DTRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYK------------ 72 (876)
Q Consensus 5 ~~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~------------ 72 (876)
.++++|||+|+||+|||||||+++|++. +|.+.....+..+++|+.+.|++||+|++++.+++.|.
T Consensus 15 ~~~~~rnI~IiG~~~~GKTTL~~~Ll~~--~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~ 92 (842)
T 1n0u_A 15 KVTNVRNMSVIAHVDHGKSTLTDSLVQR--AGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQK 92 (842)
T ss_dssp CGGGEEEEEEECCGGGTHHHHHHHHHHH--HBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSC
T ss_pred CcccccEEEEECCCCCCHHHHHHHHHHh--cCCcccccCCCceeecCchhhhhcceeEeeceeEEEeccccccccccccc
Confidence 3567999999999999999999999998 66776655667789999999999999999999999886
Q ss_pred ----CeEEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccccccccChH
Q 047363 73 ----DYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLISELKLTPL 148 (876)
Q Consensus 73 ----~~~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~~e~~~~~~ 148 (876)
++.+||||||||.+|..++.++++.+|+||+|||+++|++.|++.+|+++...++|+++|+||+|+...+++.+++
T Consensus 93 ~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~ilviNK~D~~~~e~~~~~~ 172 (842)
T 1n0u_A 93 TDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRALLELQVSKE 172 (842)
T ss_dssp CCSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHHHHTSCCCHH
T ss_pred ccCCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeEEEEECCCcchhhhccCHH
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhccccccccccccccccCcccccccccccccccccccccCCCCcEEEEeccCCCccchHHHH
Q 047363 149 EAYNRLLRIVHEVNGIMSAYKSEKYLSDVDSLLSVPSEKLGDENLQFIEDDEEDTFQPQKGNVAFVCGLDGWGFSISEFA 228 (876)
Q Consensus 149 ~~~~~l~~~l~~vn~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~~gnV~f~Sa~~Gw~ftl~~fa 228 (876)
+++.++.+.++++|..+..+... ...++.++|..++|.|+|+++||+|++.+|+
T Consensus 173 e~~~~~~~~~~~i~~~l~~~~~~--------------------------~~~~~~~~p~~~~v~~~sa~~g~~~~~~~f~ 226 (842)
T 1n0u_A 173 DLYQTFARTVESVNVIVSTYADE--------------------------VLGDVQVYPARGTVAFGSGLHGWAFTIRQFA 226 (842)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCG--------------------------GGCCCCCCGGGTCEEEEETTTTEEEEHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcccc--------------------------ccCceeeceEEeeeEEeecccccccchhhhh
Confidence 99999999999999887654210 1124568899999999999999999999999
Q ss_pred HHHHHhcCCCHHHHHHhhcccceecCCCccccccc-CCCCCCCCCCchhhhhchhHHHHHHHHcCCCCcHHHHHHHHHHc
Q 047363 229 EFYATKLGASTAALEKALWGPRYFNPKTKMIVGKK-GISTGTKARPMFVQFVLEPLWQVYQAALEPDGDKGVLEKVIKSF 307 (876)
Q Consensus 229 ~~y~~k~~~~~~~l~k~LWGd~y~~~ktkk~~~~~-~~~~~~~~~p~Fv~fiL~pi~~l~~~v~~~d~~~~~l~k~l~~~ 307 (876)
+.|.++++++...|.+.+|||+||+++++++.... +..+... +++|++++++|+|+||+++++.|++ +|++||+.+
T Consensus 227 ~~y~~~~~~~~~~l~~~~~~d~~~~~~~~~~~~~~i~~~~~~~-~~~f~~~~~~~~~~l~e~~~~~d~~--~~e~~l~~~ 303 (842)
T 1n0u_A 227 TRYAKKFGVDKAKMMDRLWGDSFFNPKTKKWTNKDTDAEGKPL-ERAFNMFILDPIFRLFTAIMNFKKD--EIPVLLEKL 303 (842)
T ss_dssp HHHHTTTTSCHHHHHHHTSSSCEEETTTTEEESCSBCTTCCBC-CBHHHHHTHHHHHHHHHHHHTTCTT--HHHHHHHHT
T ss_pred hhcchhcCCCHHHHHHHHhccccccCCCCeEEEecCCchhhhh-hHHHHHHHHHHHHHHHHHHHhcCHH--HHHHHHHHc
Confidence 99999999999999999999999999888876532 1122223 6899999999999999999998888 999999999
Q ss_pred CCCCCHHHHhccChHHHHHHhhhcccccHHHHHHHHhhcCCCcccccchhhhcccccccccCCcccccccchhhhhhhhh
Q 047363 308 NLSIPRRELQNKDPKAVLQAVLSHWLPLSDAILSMVVKCIPDPISAQSYRISRLLPKREILDNDVDCNVLTEADFVRKSV 387 (876)
Q Consensus 308 g~~l~~~~l~~~~~k~ll~~v~~~~lp~~~~lLd~i~~~lPsP~~a~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (876)
|+.++.++++ .+.+.++++++.+|+|++++|||+|++++|||.++++.|...+|++. . .++....+
T Consensus 304 g~~l~~~e~~-~~~~~l~~~~~~~~~pv~~~LLd~i~~~lPsP~~~~~~~~~~~~~g~------~-------~~~~~~~~ 369 (842)
T 1n0u_A 304 EIVLKGDEKD-LEGKALLKVVMRKFLPAADALLEMIVLHLPSPVTAQAYRAEQLYEGP------A-------DDANCIAI 369 (842)
T ss_dssp TCCCCGGGGG-CCHHHHHHHHHHHHSBHHHHHHHHHHHHSCCHHHHHHHHHHHHBSSC------T-------TSHHHHHH
T ss_pred CCCCCHHHHh-hhhHHHHHHHHhhccchHHHHHHHHHHhCCChhHhcccccccccCCc------c-------ccccccee
Confidence 9999999976 48899999999999999999999999999999999988888877421 1 11334567
Q ss_pred cccCCCCCCCeEEEEEEeeeecccccCCCCCCccccccccCCCCCCCCccceEEEEEEEeCccCCCCEEEEeccccCCcc
Q 047363 388 EVCNSSPEAPCVAFVSKMFAVPIKMLPQRGSNGEILDNYADKGGNGESEECFLAFARIFSGVLYSGQRVFVLSALYDPLK 467 (876)
Q Consensus 388 ~~cd~~~~~plv~~V~K~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iaf~RV~SGtL~~G~~v~vlg~~y~~~~ 467 (876)
..|| +++|++|||||++++++. +++++|+|||||+|++||+|+++|++||+++
T Consensus 370 ~~~~--~~~p~~a~VfK~~~~~~~-------------------------G~~l~~~RV~sG~l~~g~~v~v~~~~~n~~~ 422 (842)
T 1n0u_A 370 KNCD--PKADLMLYVSKMVPTSDK-------------------------GRFYAFGRVFAGTVKSGQKVRIQGPNYVPGK 422 (842)
T ss_dssp HTTC--TTSSCEEEEEEEEEBSST-------------------------TCEEEEEEEEESEEETTCEEEEECTTCCSSS
T ss_pred eccC--CCCCeEEEEEeeeecCCC-------------------------CceEEEEEEEeeeecCCCEEEeccccccCCC
Confidence 7898 889999999999988752 2269999999999999999999999999876
Q ss_pred hhhhccccceeEEeEEEEecCCceeecceeeCCCeEEEecCCceeeccceecCCCCcccCCCccccCCceeEEEEeeCCC
Q 047363 468 VESMQKHIQEAELQSLYLMMGQGLKPVASAKAGNVVAIRGLGQQILKSATLSSTRNCWPFSSMVFQVSPTLRVAIEPSDP 547 (876)
Q Consensus 468 ~~~~~~~~~~~~I~~L~l~~G~~~~~v~~v~AGnIv~I~GL~~~i~k~~Tl~s~~~~~~~~~~~~~~~Pvv~vaIEP~~~ 547 (876)
+++ ...++|++||++||+++++|++|+|||||+|.||+++..+++||++...+.+|.++.++.+|++++||||+++
T Consensus 423 ~~~----~~~~rv~~l~~~~g~~~~~v~~~~aGdI~ai~gl~~~~~~t~Tl~~~~~~~~l~~~~~~~~Pv~~~avep~~~ 498 (842)
T 1n0u_A 423 KDD----LFIKAIQRVVLMMGRFVEPIDDCPAGNIIGLVGIDQFLLKTGTLTTSETAHNMKVMKFSVSPVVQVAVEVKNA 498 (842)
T ss_dssp CTT----EEEEECCEEEEEETTEEEEESEEETTCEEEEESCTTTCCSSEEEESCTTCCCBCCCCCCCSCCEEEEEEESSG
T ss_pred Ccc----cceEEeeeeEeeccCcccccceeCCCCEEEEEccccceecceeecCCCCccccccCCCCCCceEEEEEEECCH
Confidence 543 2358999999999999999999999999999999998777789998777788999988667999999999999
Q ss_pred ccHHHHHHHHHHHHhcCCceEEEEccCCcEEEEecchhHHHHHHHHHHhhhccceEEEeCCeeeEEecCCCCCCCCcccc
Q 047363 548 ADMGALMKGLRLLNRADPFVEVSVSSRGENVLAAAGEVHLERCIKDLKERFAKVSLEVSPPLVSYKETIEGDTSNPLQNV 627 (876)
Q Consensus 548 ~d~~kL~~gL~~L~~~DP~l~v~~~etGE~vl~g~GElHLe~~l~dL~~~fa~vei~vs~P~V~yrETI~~~~~~~~~~~ 627 (876)
+|++||.+||++|+++||++++.++||||++|+||||||||+|++||+++|||++|++++|.|+|||||.+++
T Consensus 499 ~d~~kl~~~L~kL~~eDp~l~v~~~etge~il~g~GelHLei~~~rL~~~f~~vev~~~~P~V~yrETi~~~~------- 571 (842)
T 1n0u_A 499 NDLPKLVEGLKRLSKSDPCVLTYMSESGEHIVAGTGELHLEICLQDLEHDHAGVPLKISPPVVAYRETVESES------- 571 (842)
T ss_dssp GGHHHHHHHHHHHHHHCTTCEEEECTTSCEEEEESSHHHHHHHHHHHHHTTSCSCEEEECCCCCCEEEESSCC-------
T ss_pred HHHHHHHHHHHHHHHhCCcEEEEEcCCCCEEEEeccHHHHHHHHHHHHHHhcCCceEecCcEEEEEEeecccc-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998753
Q ss_pred ccccCCcceEEeecCCCceEEEEEeecCChhHHHHHHhhhhhhhhhhccCCCcccccccCCCCCCCChHHHHHHHHHHHH
Q 047363 628 ILLSGSSDYFEKTTPNGRCVVRVQVMKLPFTVTKVLDECADLLGIIIGGQANKSLETQRSSSGEDDNPIEALRKRIMDAV 707 (876)
Q Consensus 628 ~~~~~~~~~~~~~t~n~~~~i~v~a~PLp~~v~~~le~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 707 (876)
...++.+++|+|++++++++|||+++...++.+ .... .++ .+++.+.|
T Consensus 572 ------~~~~~~~~~~~~~~v~~~~ePl~~~~~~~~~~g----------~v~~------------~~~----~~~~~~~l 619 (842)
T 1n0u_A 572 ------SQTALSKSPNKHNRIYLKAEPIDEEVSLAIENG----------IINP------------RDD----FKARARIM 619 (842)
T ss_dssp ------SSCEEEECTTSSCEEEEEEEECCHHHHHHHHTT----------SSCT------------TSC----HHHHHHHH
T ss_pred ------ccceeeccCCcceEEEEEEEECcHHHhhHhhcC----------eecc------------ccc----HHHHHHHH
Confidence 346788999999999999999999988887753 2110 011 12222333
Q ss_pred HhhhhcCCCchHHHHHHhhhHHHH-hhccEEEECCCCCCCeEEEcCCCCCCCCcccceecccccccccccccCCCCCCCC
Q 047363 708 EDHISAGNENDQYRMEKCKVKWQK-LLRRIWALGPRQIGPNILFKPDDKQIDTESSVLVRGSAHVSERLGFVDNSDDGDA 786 (876)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~w~~-~~~~IwafGP~~~g~NiL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (876)
.+ +|+ ||. .+++||||||++.|+|+|+ |.+.+..+
T Consensus 620 ~~--------------~~~--~d~~~~~~iw~~~p~~~~~~~f~-------~~~~g~~~--------------------- 655 (842)
T 1n0u_A 620 AD--------------DYG--WDVTDARKIWCFGPDGNGPNLVI-------DQTKAVQY--------------------- 655 (842)
T ss_dssp HH--------------TTC--CCHHHHHTEEEESSTTTSSEEEE-------ECCCCCTT---------------------
T ss_pred HH--------------hcC--cchhhhhceeeeccCCCCCcEEE-------ecCCCccc---------------------
Confidence 33 366 975 5899999999999999999 65554332
Q ss_pred ccCCCCCCCccchhhhhhhHHHHHHHHHHHhcCCCCCCCCcceeEEEEEEEeecc-ccc
Q 047363 787 AEEIPPGVNRASFVEAQSLESSIVSGFQLATASGPLCDEPMWGLAFIVEAYISSN-FLR 844 (876)
Q Consensus 787 ~~~~~~~~~~~~~~~~~~~~~siv~GFq~at~~GPLceEp~~gv~f~i~d~~~~~-~~~ 844 (876)
+++|++||.+|||||+++||||+|||+||+|.|.|+.+|. ..|
T Consensus 656 ---------------~~~~~~~v~~G~~~a~~~G~L~g~pv~~v~v~l~dg~~h~d~~~ 699 (842)
T 1n0u_A 656 ---------------LHEIKDSVVAAFQWATKEGPIFGEEMRSVRVNILDVTLHADAIH 699 (842)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHSCTTTSCCBCSEEEEEEEEECCSSGGG
T ss_pred ---------------cHHHHHHHHHHHHHHHhcCCcCCceeeeEEEEEEEeeecCCccc
Confidence 6789999999999999999999999999999999999883 444
No 2
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=100.00 E-value=3.8e-92 Score=854.58 Aligned_cols=565 Identities=23% Similarity=0.303 Sum_probs=412.8
Q ss_pred CCCCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccc--cCCceeeccChhhhhhcceeeeeeEEEEEEc-------CeE
Q 047363 5 DTRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPK--LAGKLRFMDYLDEEQRRAITMKSSSIALHYK-------DYA 75 (876)
Q Consensus 5 ~~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~--~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~-------~~~ 75 (876)
+.++||||||+||+|||||||+++|++. +|.+.+. ..+..+++|++++|++|||||+++.+++.|+ +|.
T Consensus 9 p~~~IRNi~IiaHvd~GKTTL~d~LL~~--~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~ 86 (709)
T 4fn5_A 9 PINRYRNIGICAHVDAGKTTTTERVLFY--TGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYR 86 (709)
T ss_dssp CGGGEEEEEEECCSSSCHHHHHHHHHHH--HHHHHHC------------------------CCEEEEEECCTTSCSCCEE
T ss_pred chHHCeEEEEEcCCCCCHHHHHHHHHHh--cCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEE
Confidence 3489999999999999999999999999 6666542 2345689999999999999999999999996 699
Q ss_pred EEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccccccccChHHHHHHHH
Q 047363 76 INLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLISELKLTPLEAYNRLL 155 (876)
Q Consensus 76 inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~~e~~~~~~~~~~~l~ 155 (876)
|||||||||+||..|+.+|++++||||+||||++|++.||+.+|++|.++++|+|+|||||||++++++..+++++.++.
T Consensus 87 iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~~a~~~~~~~ei~~~l~ 166 (709)
T 4fn5_A 87 VNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQGANFLRVVEQIKKRLG 166 (709)
T ss_dssp EEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSSTTCCHHHHHHHHHHHHC
T ss_pred EEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEccccccCccHHHHHHHhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999997766666665553
Q ss_pred HHHHHhhhhhhhccccccccccccccccCcccccccccccccccccccccCCCCcEEEEeccCCCccchHHHHHHHHHhc
Q 047363 156 RIVHEVNGIMSAYKSEKYLSDVDSLLSVPSEKLGDENLQFIEDDEEDTFQPQKGNVAFVCGLDGWGFSISEFAEFYATKL 235 (876)
Q Consensus 156 ~~l~~vn~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~~gnV~f~Sa~~Gw~ftl~~fa~~y~~k~ 235 (876)
..+..++. |.+.+. .+.+.++ ......+.|.+...||.|...+++..+...
T Consensus 167 ~~~~~~~~--------------------pi~~~~-~~~g~vd-------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~- 217 (709)
T 4fn5_A 167 HTPVPVQL--------------------AIGAEE-NFVGQVD-------LIKMKAIYWNDDDKGMTYREEEIPAELKDL- 217 (709)
T ss_dssp SCEEESEE--------------------EESSST-TCCEEEE-------TTTTEEEEEEC--CCCEEEECCCCHHHHHH-
T ss_pred cceeeeec--------------------ccCchh-ccceEEE-------EeeeeEEEeecccCCceeccccccHHHHHH-
Confidence 22111111 222211 2222222 122334566666667766654444333211
Q ss_pred CCCHHHHHHhhcccceecCCCcccccccCCCCCCCCCCchhhhhchhHHHHHHHHcCCCCcHHHHHHHHHHcCCCCCHHH
Q 047363 236 GASTAALEKALWGPRYFNPKTKMIVGKKGISTGTKARPMFVQFVLEPLWQVYQAALEPDGDKGVLEKVIKSFNLSIPRRE 315 (876)
Q Consensus 236 ~~~~~~l~k~LWGd~y~~~ktkk~~~~~~~~~~~~~~p~Fv~fiL~pi~~l~~~v~~~d~~~~~l~k~l~~~g~~l~~~~ 315 (876)
+-.-...+++.+++.|+. ++++|++. ..++..+
T Consensus 218 -------------------------------------------~~~~~~~~~e~~~~~d~~--l~~~~~~~--~~~~~~~ 250 (709)
T 4fn5_A 218 -------------------------------------------AEEWRSSMVEAAAEANEE--LMNKYLEE--GELSEAE 250 (709)
T ss_dssp -------------------------------------------HHHHHHHHHHHHHTSSHH--HHHHHHHH--SCCCHHH
T ss_pred -------------------------------------------HHHHHHHHHHHHHhccHH--HHHHHHhc--CCccHHH
Confidence 001112456677777665 99999984 4788888
Q ss_pred HhccChHHHHHHhhhccccc-------HHHHHHHHhhcCCCcccccchhhhcccccccccCCcccccccchhhhhhhhhc
Q 047363 316 LQNKDPKAVLQAVLSHWLPL-------SDAILSMVVKCIPDPISAQSYRISRLLPKREILDNDVDCNVLTEADFVRKSVE 388 (876)
Q Consensus 316 l~~~~~k~ll~~v~~~~lp~-------~~~lLd~i~~~lPsP~~a~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (876)
++....+..+...+.+.+.+ .+.|||+|++++|||.+++..+..... ++....+.
T Consensus 251 ~~~~l~~~~~~~~~~pv~~gsa~~~~gv~~lLd~i~~~lPsP~~~~~~~~~~~~------------------~~~~~~~~ 312 (709)
T 4fn5_A 251 IKEGLRLRTLACEIVPAVCGSSFKNKGVPLVLDAVIDYLPAPTEIPAIKGVSPD------------------DETVEDER 312 (709)
T ss_dssp HHHHHHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHSCCTTSSCCEECBCCC-------------------CCSCCEE
T ss_pred HHHHHHHhhhhceeeeeeeeecccCCchHHHHHHHHhhCCCCcccccccccCCc------------------cccccccc
Confidence 87766666665555454444 378999999999999987765532111 12334567
Q ss_pred ccCCCCCCCeEEEEEEeeeecccccCCCCCCccccccccCCCCCCCCccceEEEEEEEeCccCCCCEEEEeccccCCcch
Q 047363 389 VCNSSPEAPCVAFVSKMFAVPIKMLPQRGSNGEILDNYADKGGNGESEECFLAFARIFSGVLYSGQRVFVLSALYDPLKV 468 (876)
Q Consensus 389 ~cd~~~~~plv~~V~K~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iaf~RV~SGtL~~G~~v~vlg~~y~~~~~ 468 (876)
.|| +++|++++|||+.++++. .+++|+|||||+|++||+|++. ..+
T Consensus 313 ~~d--~~~pl~~~VfK~~~d~~~--------------------------G~la~~RV~sGtl~~G~~v~~~------~~~ 358 (709)
T 4fn5_A 313 HAD--DNEPFSSLAFKIATDPFV--------------------------GTLTFARVYSGVLSSGDSVLNS------VKG 358 (709)
T ss_dssp CSC--TTSCCEEEEEECCCBTTT--------------------------BCCCEEEEEESCEETTCBCBCT------TTC
T ss_pred cCC--ccCcceEEEEEeecccCC--------------------------CceEEEeccCCCCCCCCEEEEe------cCC
Confidence 898 899999999999988763 1599999999999999999543 222
Q ss_pred hhhccccceeEEeEEEEecCCceeecceeeCCCeEEEecCCceeeccceecCCCCcccCCCccccCCceeEEEEeeCCCc
Q 047363 469 ESMQKHIQEAELQSLYLMMGQGLKPVASAKAGNVVAIRGLGQQILKSATLSSTRNCWPFSSMVFQVSPTLRVAIEPSDPA 548 (876)
Q Consensus 469 ~~~~~~~~~~~I~~L~l~~G~~~~~v~~v~AGnIv~I~GL~~~i~k~~Tl~s~~~~~~~~~~~~~~~Pvv~vaIEP~~~~ 548 (876)
++++|++||++||+++++|++|+|||||+|.||++ +.+|+||++......++++.+ ++|++++||||.+++
T Consensus 359 -------~~~~v~~l~~~~g~~~~~v~~~~aGdIv~i~Gl~~-~~~gdTl~~~~~~~~~~~~~~-~~Pvv~vavep~~~~ 429 (709)
T 4fn5_A 359 -------KKERVGRMVQMHANQREEIKEVRAGDIAALIGMKD-VTTGDTLCSIEKPIILERMDF-PEPVISVAVEPKTKA 429 (709)
T ss_dssp -------CCCBCCCEECCCSSCCCEESEECTTCEEEECSCSS-CCTTCEEECSSSCCBCC-----CCCSEEEEECBSSTT
T ss_pred -------cEEeecceeEeecceeeEeeeecCCCeeeecCCCc-CccCCEecCCCccccCCCCCC-CCcceEEEEecCCHH
Confidence 34789999999999999999999999999999988 679999998877777888877 699999999999999
Q ss_pred cHHHHHHHHHHHHhcCCceEEEE-ccCCcEEEEecchhHHHHHHHHHHhhhccceEEEeCCeeeEEecCCCCCCCCcccc
Q 047363 549 DMGALMKGLRLLNRADPFVEVSV-SSRGENVLAAAGEVHLERCIKDLKERFAKVSLEVSPPLVSYKETIEGDTSNPLQNV 627 (876)
Q Consensus 549 d~~kL~~gL~~L~~~DP~l~v~~-~etGE~vl~g~GElHLe~~l~dL~~~fa~vei~vs~P~V~yrETI~~~~~~~~~~~ 627 (876)
|++||.+||++|+++||++++.. +|||||+|+|+||||||||++||+++| +++|++|+|.|+|||||.+.+..
T Consensus 430 d~~kL~~~L~kL~~eDPsl~v~~~eetge~vi~g~GELHLei~l~rLr~e~-gvev~vs~P~V~yrETi~~~~~~----- 503 (709)
T 4fn5_A 430 DQEKMGIALGKLAQEDPSFRVKTDEESGQTIISGMGELHLDIIVDRMKREF-GVEANIGKPQVAYRETITKDNVE----- 503 (709)
T ss_dssp THHHHHHHHHHHHHHCTTCEEEEETTTTEEEEEESCHHHHHHHHHHHHTTT-CCCBCCBCCCCCCEEECCCCSEE-----
T ss_pred HhhhhHHHHHHHHHhCCeEEEEEecCCCcEEEEEECHHHHHHHHHHHHHHh-CceEEEeeceEEEEEEEecCCce-----
Confidence 99999999999999999999997 689999999999999999999999999 99999999999999999764310
Q ss_pred ccccCCcceEEeecCCCceEEEEEeecCChhHHHHHHhhhhhhhhhhccCCCcccccccCCCCCCCChHHHHHHHHHHHH
Q 047363 628 ILLSGSSDYFEKTTPNGRCVVRVQVMKLPFTVTKVLDECADLLGIIIGGQANKSLETQRSSSGEDDNPIEALRKRIMDAV 707 (876)
Q Consensus 628 ~~~~~~~~~~~~~t~n~~~~i~v~a~PLp~~v~~~le~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 707 (876)
......+..+++..
T Consensus 504 ------~~~~~~k~~~~~~~------------------------------------------------------------ 517 (709)
T 4fn5_A 504 ------IEGKFVRQSGGRGQ------------------------------------------------------------ 517 (709)
T ss_dssp ------EEEEEEEEETTEEE------------------------------------------------------------
T ss_pred ------ecceeeeccCCcCc------------------------------------------------------------
Confidence 00011111111100
Q ss_pred HhhhhcCCCchHHHHHHhhhHHHHh-hccEEEECCCCCCCeEEEcCCCCCCCCcccceecccccccccccccCCCCCCCC
Q 047363 708 EDHISAGNENDQYRMEKCKVKWQKL-LRRIWALGPRQIGPNILFKPDDKQIDTESSVLVRGSAHVSERLGFVDNSDDGDA 786 (876)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~w~~~-~~~IwafGP~~~g~NiL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (876)
++..|..+ ...+|+|||... .+.+. |.+.+...
T Consensus 518 -----------------~~~~~~~~~~~~~~e~g~~~~-~~~f~-------~~~~~~~~--------------------- 551 (709)
T 4fn5_A 518 -----------------FGHCWIRFSAADVDEKGNITE-GLVFE-------NEVVGGVV--------------------- 551 (709)
T ss_dssp -----------------EEEEEEEEECCCBC-CCCBCC-EEEEE-------ECC-CCSS---------------------
T ss_pred -----------------ceeEEEEEeeccccccCCCcC-ceEEe-------cccccccC---------------------
Confidence 11114432 455799998754 47777 44333211
Q ss_pred ccCCCCCCCccchhhhhhhHHHHHHHHHHHhcCCCCCCCCcceeEEEEEEEeecc
Q 047363 787 AEEIPPGVNRASFVEAQSLESSIVSGFQLATASGPLCDEPMWGLAFIVEAYISSN 841 (876)
Q Consensus 787 ~~~~~~~~~~~~~~~~~~~~~siv~GFq~at~~GPLceEp~~gv~f~i~d~~~~~ 841 (876)
.+++.++|.+|||||+++||||+|||+||+|.|.|..+|+
T Consensus 552 ---------------p~~~~~~v~~g~~~a~~~G~l~g~pv~~v~v~l~dg~~h~ 591 (709)
T 4fn5_A 552 ---------------PKEYIPAIQKGIEEQMKNGVVAGYPLIGLKATVFDGSYHD 591 (709)
T ss_dssp ---------------CGGGHHHHHHHHHHHHHHCSSSSCCBSEEEEEEEECCCCT
T ss_pred ---------------CHHHHHHHHHHHHHHHhcCcccCCceeeeEEEEEEccccC
Confidence 4579999999999999999999999999999999998773
No 3
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=100.00 E-value=2.2e-79 Score=740.31 Aligned_cols=558 Identities=23% Similarity=0.327 Sum_probs=431.6
Q ss_pred CCCCCceEEEEEeCCCCcHHHHHHHHHHhhCCCCccccc--CCceeeccChhhhhhcceeeeeeEEEEEEcC-------e
Q 047363 4 SDTRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKL--AGKLRFMDYLDEEQRRAITMKSSSIALHYKD-------Y 74 (876)
Q Consensus 4 ~~~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~--~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~-------~ 74 (876)
.+++++|||+|+||+|||||||+++|++. +|.+.... ....+++|+.+.|++||+|++++.+++.|.+ +
T Consensus 5 ~~~~~~~~I~IiG~~~~GKTTL~~~Ll~~--~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~ 82 (704)
T 2rdo_7 5 TPIARYRNIGISAHIDAGKTTTTERILFY--TGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPH 82 (704)
T ss_pred CCcccccEEEEECCCCCCHHHHHHHHHHh--cCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCce
Confidence 45688999999999999999999999998 66554321 1234789999999999999999999999987 9
Q ss_pred EEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccccccccChHHHHHHH
Q 047363 75 AINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLISELKLTPLEAYNRL 154 (876)
Q Consensus 75 ~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~~e~~~~~~~~~~~l 154 (876)
.+||||||||.+|..++.++++.+|++|+|||+++|++.+++.+|+++...++|+++|+||+|+..+++ .+
T Consensus 83 ~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~~~~~----~~----- 153 (704)
T 2rdo_7 83 RINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGANF----LK----- 153 (704)
T ss_pred eEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcccccH----HH-----
Confidence 999999999999999999999999999999999999999999999999999999999999999987653 22
Q ss_pred HHHHHHhhhhhhhccccccccccccccccCcccccccccccccccccccccCCCCcEEEEeccCCCccchHHHHHHHHHh
Q 047363 155 LRIVHEVNGIMSAYKSEKYLSDVDSLLSVPSEKLGDENLQFIEDDEEDTFQPQKGNVAFVCGLDGWGFSISEFAEFYATK 234 (876)
Q Consensus 155 ~~~l~~vn~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~~gnV~f~Sa~~Gw~ftl~~fa~~y~~k 234 (876)
++++++..+..... .+..|.+.+. .|.++++
T Consensus 154 --~~~~l~~~l~~~~~---------~~~~Pi~~~~-~f~g~~d------------------------------------- 184 (704)
T 2rdo_7 154 --VVNQIKTRLGANPV---------PLQLAIGAEE-HFTGVVD------------------------------------- 184 (704)
T ss_pred --HHHHHHHHhCCCce---------eEEccccccc-cccceee-------------------------------------
Confidence 33333332221000 0001222111 1111111
Q ss_pred cCCCHHHHHHhhcccceecC-C-CcccccccCCCCCCCCCCchhhhhchhHHHHHHHHcCCCCcHHHHHHHHHHcCCCCC
Q 047363 235 LGASTAALEKALWGPRYFNP-K-TKMIVGKKGISTGTKARPMFVQFVLEPLWQVYQAALEPDGDKGVLEKVIKSFNLSIP 312 (876)
Q Consensus 235 ~~~~~~~l~k~LWGd~y~~~-k-tkk~~~~~~~~~~~~~~p~Fv~fiL~pi~~l~~~v~~~d~~~~~l~k~l~~~g~~l~ 312 (876)
.-.+... ||++ . .+++... .. ...|.++++++.+++++++++.|++ +|++|++ +..++
T Consensus 185 ----l~~~~~~-----~~~~~~~g~~~~~~------~~-~~~~~~~~~~~~~~l~e~~ae~dd~--l~e~~l~--~~~l~ 244 (704)
T 2rdo_7 185 ----LVKMKAI-----NWNDADQGVTFEYE------DI-PADMVELANEWHQNLIESAAEASEE--LMEKYLG--GEELT 244 (704)
T ss_pred ----hhhhhhh-----cccCccCCcceEEe------cC-CHHHHHHHHHHHHHHHHHHHhcCHH--HHHHHhc--CCCCC
Confidence 1111122 3332 1 1222111 00 1357889999999999999988776 9999998 78899
Q ss_pred HHHHhccChHHHHHHhhhccccc-------HHHHHHHHhhcCCCcccccchhhhcccccccccCCcccccccchhhhhhh
Q 047363 313 RRELQNKDPKAVLQAVLSHWLPL-------SDAILSMVVKCIPDPISAQSYRISRLLPKREILDNDVDCNVLTEADFVRK 385 (876)
Q Consensus 313 ~~~l~~~~~k~ll~~v~~~~lp~-------~~~lLd~i~~~lPsP~~a~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 385 (876)
.++++....+.++...+.++|++ .+.|||+|++++|||.+++..|. +. .. + +...
T Consensus 245 ~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~lPsP~~~~~~~~---~~------~~-~--------~~~~ 306 (704)
T 2rdo_7 245 EAEIKGALRQRVLNNEIILVTCGSAFKNKGVQAMLDAVIDYLPSPVDVPAING---IL------DD-G--------KDTP 306 (704)
T ss_pred HHHHHHHHHHHHHhCCeeEEEEeecccCccHHHHHHHHHHHCCChhhcccccc---cC------Cc-c--------cccc
Confidence 99998766666665443344433 48999999999999998776553 10 00 0 0012
Q ss_pred hhcccCCCCCCCeEEEEEEeeeecccccCCCCCCccccccccCCCCCCCCccceEEEEEEEeCccCCCCEEEEeccccCC
Q 047363 386 SVEVCNSSPEAPCVAFVSKMFAVPIKMLPQRGSNGEILDNYADKGGNGESEECFLAFARIFSGVLYSGQRVFVLSALYDP 465 (876)
Q Consensus 386 ~~~~cd~~~~~plv~~V~K~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iaf~RV~SGtL~~G~~v~vlg~~y~~ 465 (876)
....|+ +++|+++||||++++++.. .++|+|||||+|++||+|++..
T Consensus 307 ~~~~~~--~~~p~~~~VfK~~~d~~~G--------------------------~~~~~RV~sG~l~~g~~v~~~~----- 353 (704)
T 2rdo_7 307 AERHAS--DDEPFSALAFKIATDPFVG--------------------------NLTFFRVYSGVVNSGDTVLNSV----- 353 (704)
T ss_pred cccccC--CCCceEEEEEEEEEcCCCc--------------------------eEEEEEEEeeeecCCCEEEeCC-----
Confidence 356787 8899999999999987631 4899999999999999997542
Q ss_pred cchhhhccccceeEEeEEEEecCCceeecceeeCCCeEEEecCCceeeccceecCCCCcccCCCccccCCceeEEEEeeC
Q 047363 466 LKVESMQKHIQEAELQSLYLMMGQGLKPVASAKAGNVVAIRGLGQQILKSATLSSTRNCWPFSSMVFQVSPTLRVAIEPS 545 (876)
Q Consensus 466 ~~~~~~~~~~~~~~I~~L~l~~G~~~~~v~~v~AGnIv~I~GL~~~i~k~~Tl~s~~~~~~~~~~~~~~~Pvv~vaIEP~ 545 (876)
++ .+++|++|++++|+++++|++|+|||||+|.||++. .+|+||++...+.+|+++.+ +.|++++||+|.
T Consensus 354 -~~-------~~~~v~~l~~~~g~~~~~v~~~~aGdIv~i~gl~~~-~~GdTl~~~~~~~~l~~~~~-~~Pv~~~ai~p~ 423 (704)
T 2rdo_7 354 -KA-------ARERFGRIVQMHANKREEIKEVRAGDIAAAIGLKDV-TTGDTLCDPDAPIILERMEF-PEPVISIAVEPK 423 (704)
T ss_pred -CC-------cEEEeceEEEEeCCCceEcceeCCCCEEEEeCcccC-ccCCEEeCCCcccccCCCCC-CCceEEEEEEEC
Confidence 11 347999999999999999999999999999999985 78999998777778888988 689999999999
Q ss_pred CCccHHHHHHHHHHHHhcCCceEEEEc-cCCcEEEEecchhHHHHHHHHHHhhhccceEEEeCCeeeEEecCCCCC-CCC
Q 047363 546 DPADMGALMKGLRLLNRADPFVEVSVS-SRGENVLAAAGEVHLERCIKDLKERFAKVSLEVSPPLVSYKETIEGDT-SNP 623 (876)
Q Consensus 546 ~~~d~~kL~~gL~~L~~~DP~l~v~~~-etGE~vl~g~GElHLe~~l~dL~~~fa~vei~vs~P~V~yrETI~~~~-~~~ 623 (876)
+++|++||.+||++|+++||++++.++ ||||++|+|+||||||+|++||+++| ++++.+++|.|+|||||.+++ ..
T Consensus 424 ~~~d~~kl~~~L~~L~~eDp~l~v~~~~etge~il~g~GelhLei~~~rL~~~f-~v~v~~~~p~V~yrEti~~~~~~~- 501 (704)
T 2rdo_7 424 TKADQEKMGLALGRLAKEDPSFRVWTDEESNQTIIAGMGELHLDIIVDRMKREF-NVEANVGKPQVAYRETIRQKVTDV- 501 (704)
T ss_pred ChHHHHHHHHHHHHHHhhCCEEEEEEcCCCCcEEEEeCCHHHHHHHHHHHHHHh-CceEEEeCCEEEEEEeeccccccc-
Confidence 999999999999999999999999994 89999999999999999999999999 999999999999999997643 21
Q ss_pred ccccccccCCcceEEeecCCC---ceEEEEEeecCChhHHHHHHhhhhhhhhhhccCCCcccccccCCCCCCCChHHHHH
Q 047363 624 LQNVILLSGSSDYFEKTTPNG---RCVVRVQVMKLPFTVTKVLDECADLLGIIIGGQANKSLETQRSSSGEDDNPIEALR 700 (876)
Q Consensus 624 ~~~~~~~~~~~~~~~~~t~n~---~~~i~v~a~PLp~~v~~~le~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 700 (876)
. ....+..++ ..+++++++|||+ |.
T Consensus 502 ----------~-~~~~kq~gg~~q~~~v~~~~ePl~~------------------~~----------------------- 529 (704)
T 2rdo_7 502 ----------E-GKHAKQSGGRGQYGHVVIDMYPLEP------------------GS----------------------- 529 (704)
T ss_pred ----------e-eeeccccCCCCeeEEEEEEEEECCC------------------CC-----------------------
Confidence 0 112222222 3689999999954 00
Q ss_pred HHHHHHHHhhhhcCCCchHHHHHHhhhHHHHhhccEEEECCCCCCCeEEEcCCCCCCCCcccceecccccccccccccCC
Q 047363 701 KRIMDAVEDHISAGNENDQYRMEKCKVKWQKLLRRIWALGPRQIGPNILFKPDDKQIDTESSVLVRGSAHVSERLGFVDN 780 (876)
Q Consensus 701 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~IwafGP~~~g~NiL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 780 (876)
+.. .|.|. |.+.+...
T Consensus 530 -----------------------------------------~g~-g~~f~-------~~~~g~~~--------------- 545 (704)
T 2rdo_7 530 -----------------------------------------NPK-GYEFI-------NDIKGGVI--------------- 545 (704)
T ss_pred -----------------------------------------CCC-CcEEE-------EeccCCcC---------------
Confidence 000 15555 43333111
Q ss_pred CCCCCCccCCCCCCCccchhhhhhhHHHHHHHHHHHhcCCCCCCCCcceeEEEEEEEeecc
Q 047363 781 SDDGDAAEEIPPGVNRASFVEAQSLESSIVSGFQLATASGPLCDEPMWGLAFIVEAYISSN 841 (876)
Q Consensus 781 ~~~~~~~~~~~~~~~~~~~~~~~~~~~siv~GFq~at~~GPLceEp~~gv~f~i~d~~~~~ 841 (876)
.++|+++|.+|||||+++||||+|||+||+|.|.|...|+
T Consensus 546 ---------------------p~~~~~~v~~g~~~a~~~G~l~g~pv~~v~v~l~dg~~h~ 585 (704)
T 2rdo_7 546 ---------------------PGEYIPAVDKGIQEQLKAGPLAGYPVVDMGIRLHFGSYHD 585 (704)
T ss_pred ---------------------cHHHHHHHHHHHHHHHhcCCcCCCceeeEEEEEEeccccC
Confidence 3579999999999999999999999999999999998874
No 4
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=9.5e-78 Score=725.48 Aligned_cols=555 Identities=23% Similarity=0.307 Sum_probs=412.4
Q ss_pred CCCCCceEEEEEeCCCCcHHHHHHHHHHhhCCCCccccc--CCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcC
Q 047363 4 SDTRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKL--AGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDS 81 (876)
Q Consensus 4 ~~~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~--~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDT 81 (876)
+.++++|||+|+||+|||||||+++|++. .|.+.... ....+++|+.+.|++||+|+.+....+.|.++.++||||
T Consensus 5 ~~~~~~~~I~IvG~~~aGKSTL~~~Ll~~--~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDT 82 (693)
T 2xex_A 5 FSLEKTRNIGIMAHIDAGKTTTTERILYY--TGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDT 82 (693)
T ss_dssp SCSTTEEEEEEECCGGGTHHHHHHHHHHH--HSSCC-------------------------CCSEEEEEETTEEEEEECC
T ss_pred CCcccceEEEEECCCCCCHHHHHHHHHHh--cCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEEC
Confidence 45688999999999999999999999987 45443211 123467899999999999999999999999999999999
Q ss_pred CCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccccccccChHHHHHHHHHHHHHh
Q 047363 82 PGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLISELKLTPLEAYNRLLRIVHEV 161 (876)
Q Consensus 82 PGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~~e~~~~~~~~~~~l~~~l~~v 161 (876)
|||.+|..++.++++.+|++|+|+|+.++++.++..+|+++.+.++|+++|+||+|+..++ +.++ ++++
T Consensus 83 PG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~~~~----~~~~-------~~~l 151 (693)
T 2xex_A 83 PGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLGAN----FEYS-------VSTL 151 (693)
T ss_dssp CCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSTTCC----HHHH-------HHHH
T ss_pred cCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEEEEECCCccccc----hHHH-------HHHH
Confidence 9999999999999999999999999999999999999999999999999999999998764 2233 3333
Q ss_pred hhhhhhccccccccccccccccCcccccccccccccccccccccCCCCcEEEEeccCCCccchHHHHHHHHHhcCCCHHH
Q 047363 162 NGIMSAYKSEKYLSDVDSLLSVPSEKLGDENLQFIEDDEEDTFQPQKGNVAFVCGLDGWGFSISEFAEFYATKLGASTAA 241 (876)
Q Consensus 162 n~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~~gnV~f~Sa~~Gw~ftl~~fa~~y~~k~~~~~~~ 241 (876)
+..+....... .+ |.+.+ +.+.++++.
T Consensus 152 ~~~l~~~~~~~---~i------pisa~-~~~~~l~d~------------------------------------------- 178 (693)
T 2xex_A 152 HDRLQANAAPI---QL------PIGAE-DEFEAIIDL------------------------------------------- 178 (693)
T ss_dssp HHHHCCCEEES---EE------EECCG-GGCCEEEET-------------------------------------------
T ss_pred HHHhCCCceeE---Ee------ecccC-CCcceeeee-------------------------------------------
Confidence 33221100000 00 11110 011111111
Q ss_pred HHHhhcccceec-CCCcccccccCCCCCCCCCCchhhhhchhHHHHHHHHcCCCCcHHHHHHHHHHcCCCCCHHHHhccC
Q 047363 242 LEKALWGPRYFN-PKTKMIVGKKGISTGTKARPMFVQFVLEPLWQVYQAALEPDGDKGVLEKVIKSFNLSIPRRELQNKD 320 (876)
Q Consensus 242 l~k~LWGd~y~~-~ktkk~~~~~~~~~~~~~~p~Fv~fiL~pi~~l~~~v~~~d~~~~~l~k~l~~~g~~l~~~~l~~~~ 320 (876)
+... .+||+ .....+... .. ...|.+++.+...++++.+.+.|++ +|++|++ |..++.++++...
T Consensus 179 l~~~---~~~~~~~~~~~~~~~------~~-~~~~~~~~e~~r~~l~e~l~e~dd~--l~e~~l~--~~~~~~~~~~~~l 244 (693)
T 2xex_A 179 VEMK---CFKYTNDLGTEIEEI------EI-PEDHLDRAEEARASLIEAVAETSDE--LMEKYLG--DEEISVSELKEAI 244 (693)
T ss_dssp TTTE---EEECCSSSSCSCEEE------CC-CGGGHHHHHHHHHHHHHHHHTTCHH--HHHHHHT--TCCCCHHHHHHHH
T ss_pred ecce---eEEeccCCCceeEEe------cC-CHHHHHHHHHHHHHHHHHHhhCCHH--HHHHHhc--CCCCCHHHHHHHH
Confidence 1111 23444 211111111 00 1246777777888999999887766 9999998 7789999988777
Q ss_pred hHHHHHHhhhccccc-------HHHHHHHHhhcCCCcccccchhhhcccccccccCCcccccccchhhhhhhhhcccCCC
Q 047363 321 PKAVLQAVLSHWLPL-------SDAILSMVVKCIPDPISAQSYRISRLLPKREILDNDVDCNVLTEADFVRKSVEVCNSS 393 (876)
Q Consensus 321 ~k~ll~~v~~~~lp~-------~~~lLd~i~~~lPsP~~a~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~cd~~ 393 (876)
++.++...+.++|++ .+.||++|++++|||.+++..|. + ... . .-...+..||
T Consensus 245 ~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsP~~~~~~~~---~------~~~--~-------~~~~~~~~~~-- 304 (693)
T 2xex_A 245 RQATTNVEFYPVLCGTAFKNKGVQLMLDAVIDYLPSPLDVKPIIG---H------RAS--N-------PEEEVIAKAD-- 304 (693)
T ss_dssp HHHHHTTSCEEEEECBTTTTBSHHHHHHHHHHHSCCGGGSCCEEE---E------ETT--E-------EEEEEEECSC--
T ss_pred HHHHHhCCeeeEEEeecccCcCHHHHHHHHHHHCCCchhcccccc---c------CCC--c-------cccceeecCC--
Confidence 777766555555554 48999999999999998776553 1 000 0 0012356888
Q ss_pred CCCCeEEEEEEeeeecccccCCCCCCccccccccCCCCCCCCccceEEEEEEEeCccCCCCEEEEeccccCCcchhhhcc
Q 047363 394 PEAPCVAFVSKMFAVPIKMLPQRGSNGEILDNYADKGGNGESEECFLAFARIFSGVLYSGQRVFVLSALYDPLKVESMQK 473 (876)
Q Consensus 394 ~~~plv~~V~K~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iaf~RV~SGtL~~G~~v~vlg~~y~~~~~~~~~~ 473 (876)
+++|+++||||++++|+.. .++|+|||||+|++||+|++.. ++
T Consensus 305 ~~~p~~a~VfK~~~d~~~g--------------------------~~~~~RV~sG~l~~g~~v~~~~------~~----- 347 (693)
T 2xex_A 305 DSAEFAALAFKVMTDPYVG--------------------------KLTFFRVYSGTMTSGSYVKNST------KG----- 347 (693)
T ss_dssp TTSCCEEEEEEEEEETTTE--------------------------EEEEEEEEESEEETTEEEEETT------TT-----
T ss_pred CCCceEEEEEEeeecCCCc--------------------------eEEEEEEEeeeEecCCEEEecC------CC-----
Confidence 8899999999999998631 4899999999999999997532 11
Q ss_pred ccceeEEeEEEEecCCceeecceeeCCCeEEEecCCceeeccceecCCCCcccCCCccccCCceeEEEEeeCCCccHHHH
Q 047363 474 HIQEAELQSLYLMMGQGLKPVASAKAGNVVAIRGLGQQILKSATLSSTRNCWPFSSMVFQVSPTLRVAIEPSDPADMGAL 553 (876)
Q Consensus 474 ~~~~~~I~~L~l~~G~~~~~v~~v~AGnIv~I~GL~~~i~k~~Tl~s~~~~~~~~~~~~~~~Pvv~vaIEP~~~~d~~kL 553 (876)
++++|++||+++|+++++|++|+|||||+|.||++. .+|+||++...+.+|+++.+ +.|++++||+|.+++|++||
T Consensus 348 --~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~-~~GdTl~~~~~~~~~~~~~~-~~Pv~~~av~p~~~~d~~kl 423 (693)
T 2xex_A 348 --KRERVGRLLQMHANSRQEIDTVYSGDIAAAVGLKDT-GTGDTLCGEKNDIILESMEF-PEPVIHLSVEPKSKADQDKM 423 (693)
T ss_dssp --EEEEECCEEEECSSCEEECSEEETTCEEEEESCSSC-CTTCEEEETTCCEECCCCSS-CSCSEEEEEEESSHHHHHHH
T ss_pred --ceEEeceEEEEeCCCceEccccCcCCEEEEeCcccC-ccCCEEecCCCccccCCcCC-CCceEEEEEEeCCchhHHHH
Confidence 358999999999999999999999999999999985 67999998777778999988 57999999999999999999
Q ss_pred HHHHHHHHhcCCceEEEEc-cCCcEEEEecchhHHHHHHHHHHhhhccceEEEeCCeeeEEecCCCCCCCCccccccccC
Q 047363 554 MKGLRLLNRADPFVEVSVS-SRGENVLAAAGEVHLERCIKDLKERFAKVSLEVSPPLVSYKETIEGDTSNPLQNVILLSG 632 (876)
Q Consensus 554 ~~gL~~L~~~DP~l~v~~~-etGE~vl~g~GElHLe~~l~dL~~~fa~vei~vs~P~V~yrETI~~~~~~~~~~~~~~~~ 632 (876)
.+||++|+++||++++.++ ||||++|+||||||||+|++||+++| +++|.+++|.|+|||||.+++.
T Consensus 424 ~~~L~~l~~eDp~l~~~~~~et~e~il~g~Gelhlei~~~rL~~~~-~v~v~~~~p~V~yrEti~~~~~----------- 491 (693)
T 2xex_A 424 TQALVKLQEEDPTFHAHTDEETGQVIIGGMGELHLDILVDRMKKEF-NVECNVGAPMVSYRETFKSSAQ----------- 491 (693)
T ss_dssp HHHHHHHHHHCTTCEEEC---CCCEEEEESSHHHHHHHHHHHHHHS-CCCEEECCCEECCEEEESSCEE-----------
T ss_pred HHHHHHHHhhCCeEEEEEcCCCCcEEEEeCCHHHHHHHHHHHHHHh-CceEEEeCCeEEEEEEeccccc-----------
Confidence 9999999999999999994 89999999999999999999999999 9999999999999999987531
Q ss_pred CcceEEeecCCCc---eEEEEEeecCChhHHHHHHhhhhhhhhhhccCCCcccccccCCCCCCCChHHHHHHHHHHHHHh
Q 047363 633 SSDYFEKTTPNGR---CVVRVQVMKLPFTVTKVLDECADLLGIIIGGQANKSLETQRSSSGEDDNPIEALRKRIMDAVED 709 (876)
Q Consensus 633 ~~~~~~~~t~n~~---~~i~v~a~PLp~~v~~~le~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 709 (876)
......+..+++ .+++++++|||++ .
T Consensus 492 -~~~~~~kq~gg~~~~~~v~~~~ePl~~g------------------~-------------------------------- 520 (693)
T 2xex_A 492 -VQGKFSRQSGGRGQYGDVHIEFTPNETG------------------A-------------------------------- 520 (693)
T ss_dssp -EEEEEEECTTSSCEEEEEEEEEEECCTT------------------C--------------------------------
T ss_pred -eeEeeccccCCCCceEEEEEEEEECCCC------------------C--------------------------------
Confidence 112233444443 5899999999873 0
Q ss_pred hhhcCCCchHHHHHHhhhHHHHhhccEEEECCCCCCCeEEEcCCCCCCCCcccceecccccccccccccCCCCCCCCccC
Q 047363 710 HISAGNENDQYRMEKCKVKWQKLLRRIWALGPRQIGPNILFKPDDKQIDTESSVLVRGSAHVSERLGFVDNSDDGDAAEE 789 (876)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~w~~~~~~IwafGP~~~g~NiL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 (876)
.|.|. |.+.+...
T Consensus 521 ------------------------------------g~~f~-------~~~~g~~~------------------------ 533 (693)
T 2xex_A 521 ------------------------------------GFEFE-------NAIVGGVV------------------------ 533 (693)
T ss_dssp ------------------------------------CCEEE-------ECCCTTSS------------------------
T ss_pred ------------------------------------CCEEE-------ecCCCCcC------------------------
Confidence 14455 43333111
Q ss_pred CCCCCCccchhhhhhhHHHHHHHHHHHhcCCCCCCCCcceeEEEEEEEeecc
Q 047363 790 IPPGVNRASFVEAQSLESSIVSGFQLATASGPLCDEPMWGLAFIVEAYISSN 841 (876)
Q Consensus 790 ~~~~~~~~~~~~~~~~~~siv~GFq~at~~GPLceEp~~gv~f~i~d~~~~~ 841 (876)
.++|+++|.+|||||+++||||+|||+||+|.|.|...|.
T Consensus 534 ------------p~~~~~~v~~g~~~a~~~G~l~g~pv~~v~v~l~dg~~h~ 573 (693)
T 2xex_A 534 ------------PREYIPSVEAGLKDAMENGVLAGYPLIDVKAKLYDGSYHD 573 (693)
T ss_dssp ------------CGGGHHHHHHHHHHHHHTCSSSSCCBCSEEEEEEEEECCT
T ss_pred ------------CHHHHHHHHHHHHHHHhcCCccCCceeeEEEEEEeccccC
Confidence 3479999999999999999999999999999999998874
No 5
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=100.00 E-value=7.4e-77 Score=717.51 Aligned_cols=498 Identities=27% Similarity=0.363 Sum_probs=328.7
Q ss_pred CCCCceEEEEEeCCCCcHHHHHHHHHHhhCCCCccccc--CCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCC
Q 047363 5 DTRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKL--AGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSP 82 (876)
Q Consensus 5 ~~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~--~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTP 82 (876)
.++++|||+|+||+|||||||+++|+.. .|.+.... ....+++|+.+.|+++|+|+.+...++.|.++.++|||||
T Consensus 8 ~~~~~~~I~IvG~~~aGKTTL~~~Ll~~--~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTP 85 (691)
T 1dar_A 8 DLKRLRNIGIAAHIDAGKTTTTERILYY--TGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTP 85 (691)
T ss_dssp CGGGEEEEEEEECTTSCHHHHHHHHHHH--HCC----------------------------CCEEEEEETTEEEEEECCC
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHHh--cCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECc
Confidence 4567999999999999999999999987 44443211 1234688999999999999999999999999999999999
Q ss_pred CCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccccccccChHHHHHHHHHHHHHhh
Q 047363 83 GHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLISELKLTPLEAYNRLLRIVHEVN 162 (876)
Q Consensus 83 Gh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~~e~~~~~~~~~~~l~~~l~~vn 162 (876)
||.+|..++.++++.+|++|+|+|+.++++.++..+|+++.+.++|+++|+||+|+..+++ ...+++++
T Consensus 86 G~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~-----------~~~~~~l~ 154 (691)
T 1dar_A 86 GHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADL-----------WLVIRTMQ 154 (691)
T ss_dssp SSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTTSTTCCH-----------HHHHHHHH
T ss_pred CccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCcccCCH-----------HHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999987652 23333333
Q ss_pred hhhhhccccccccccccccccCcccccccccccccccccccccCCCCcEEEEeccCCCccchHHHHHHHHHhcCCCHHHH
Q 047363 163 GIMSAYKSEKYLSDVDSLLSVPSEKLGDENLQFIEDDEEDTFQPQKGNVAFVCGLDGWGFSISEFAEFYATKLGASTAAL 242 (876)
Q Consensus 163 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~~gnV~f~Sa~~Gw~ftl~~fa~~y~~k~~~~~~~l 242 (876)
..+....... ..|.+. ++...||... +
T Consensus 155 ~~l~~~~~~~---------~~Pi~~--------------------------~~~~~g~~d~------------------~ 181 (691)
T 1dar_A 155 ERLGARPVVM---------QLPIGR--------------------------EDTFSGIIDV------------------L 181 (691)
T ss_dssp HTTCCCEEEC---------EEEESC--------------------------GGGCCEEEET------------------T
T ss_pred HHhCCCccce---------eccccC--------------------------CCcccchhhh------------------h
Confidence 3322100000 001111 1112233111 1
Q ss_pred HHhhcccceec-CCCcccccccCCCCCCCCCCchhhhhchhHHHHHHHHcCCCCcHHHHHHHHHHcCCCCCHHHHhccCh
Q 047363 243 EKALWGPRYFN-PKTKMIVGKKGISTGTKARPMFVQFVLEPLWQVYQAALEPDGDKGVLEKVIKSFNLSIPRRELQNKDP 321 (876)
Q Consensus 243 ~k~LWGd~y~~-~ktkk~~~~~~~~~~~~~~p~Fv~fiL~pi~~l~~~v~~~d~~~~~l~k~l~~~g~~l~~~~l~~~~~ 321 (876)
.+.. +||+ .+...+... .. ...|.+++.+...++++++.+.|++ +|++|++ |..++.++++...+
T Consensus 182 ~~~~---~~~~~~~g~~~~~~------~~-~~~~~~~~~~~r~~l~e~~~e~dd~--l~e~~l~--~~~~~~~~~~~~~~ 247 (691)
T 1dar_A 182 RMKA---YTYGNDLGTDIREI------PI-PEEYLDQAREYHEKLVEVAADFDEN--IMLKYLE--GEEPTEEELVAAIR 247 (691)
T ss_dssp TTEE---EEECSTTSCCEEEE------CC-CGGGHHHHHHHHHHHHHHHTTTCHH--HHHHHHH--TCCCCHHHHHHHHH
T ss_pred ccee---eEeccCCCceeEEe------cC-CHHHHHHHHHHHHHHHHHHhhCCHH--HHHHHHC--CCCCCHHHHHHHHH
Confidence 1122 3554 221112111 00 1357788888889999999888766 9999998 78899999988777
Q ss_pred HHHHHHhhhccccc-------HHHHHHHHhhcCCCcccccchhhhcccccccccCCcccccccchhhhhhhhhcccCCCC
Q 047363 322 KAVLQAVLSHWLPL-------SDAILSMVVKCIPDPISAQSYRISRLLPKREILDNDVDCNVLTEADFVRKSVEVCNSSP 394 (876)
Q Consensus 322 k~ll~~v~~~~lp~-------~~~lLd~i~~~lPsP~~a~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~cd~~~ 394 (876)
+.+++..+.++|++ .+.||++|++++|+|.+++..|.. . . +. + ..+..|+ +
T Consensus 248 ~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~--~-------~--~~-------~--~~~~~~~--~ 305 (691)
T 1dar_A 248 KGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIPPIKGT--T-------P--EG-------E--VVEIHPD--P 305 (691)
T ss_dssp HHHHTTSCEEEEECBGGGTBSHHHHHHHHHHHSCCTTTSCCEEEE--C-------S--SS-------C--EEEECCC--T
T ss_pred HHHHhCcEeEEEEeecccCcCHHHHHHHHHHhCCChhhccccccc--C-------C--Cc-------c--ccccccC--C
Confidence 77776655566655 479999999999999987765531 0 0 00 0 1356787 8
Q ss_pred CCCeEEEEEEeeeecccccCCCCCCccccccccCCCCCCCCccceEEEEEEEeCccCCCCEEEEeccccCCcchhhhccc
Q 047363 395 EAPCVAFVSKMFAVPIKMLPQRGSNGEILDNYADKGGNGESEECFLAFARIFSGVLYSGQRVFVLSALYDPLKVESMQKH 474 (876)
Q Consensus 395 ~~plv~~V~K~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iaf~RV~SGtL~~G~~v~vlg~~y~~~~~~~~~~~ 474 (876)
++|++++|||++++++.. .++|+|||||+|++||+|++.. +
T Consensus 306 ~~p~~~~Vfk~~~d~~~G--------------------------~~~~~RV~sG~l~~g~~v~~~~------~------- 346 (691)
T 1dar_A 306 NGPLAALAFKIMADPYVG--------------------------RLTFIRVYSGTLTSGSYVYNTT------K------- 346 (691)
T ss_dssp TSCCEEEEEEEEEETTTE--------------------------EEEEEEEEESEEESSCEEEETT------T-------
T ss_pred CCCcEEEEEEEEEcCCCC--------------------------cEEEEEEeeeeEecCCEEEecC------C-------
Confidence 899999999999988631 4899999999999999997532 1
Q ss_pred cceeEEeEEEEecCCceeecceeeCCCeEEEecCCceeeccceecCCCCc-ccCCCccccCCceeEEEEeeCCCccHHHH
Q 047363 475 IQEAELQSLYLMMGQGLKPVASAKAGNVVAIRGLGQQILKSATLSSTRNC-WPFSSMVFQVSPTLRVAIEPSDPADMGAL 553 (876)
Q Consensus 475 ~~~~~I~~L~l~~G~~~~~v~~v~AGnIv~I~GL~~~i~k~~Tl~s~~~~-~~~~~~~~~~~Pvv~vaIEP~~~~d~~kL 553 (876)
..+++|++|++++|+++++|++|+|||||+|.||++. .+|+||++...+ .+|+++.+ +.|++++||+|.+++|++||
T Consensus 347 ~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~-~~Gdtl~~~~~~~~~l~~~~~-~~P~~~~ai~p~~~~d~~kl 424 (691)
T 1dar_A 347 GRKERVARLLRMHANHREEVEELKAGDLGAVVGLKET-ITGDTLVGEDAPRVILESIEV-PEPVIDVAIEPKTKADQEKL 424 (691)
T ss_dssp TEEEECCEEEEECSSCEEEESEEETTCEEEEECCSSC-CTTCEEEETTCCCCBCC-------------------------
T ss_pred CcEEEEceEEEEeCCCceEcceecCCCEEEEeCcccC-ccCCEEecCCCcccccCCCCC-CCceEEEEEEECCchhHHHH
Confidence 1358999999999999999999999999999999985 689999987666 78888888 57999999999999999999
Q ss_pred HHHHHHHHhcCCceEEEEc-cCCcEEEEecchhHHHHHHHHHHhhhccceEEEeCCeeeEEecCCCCCCCCccccccccC
Q 047363 554 MKGLRLLNRADPFVEVSVS-SRGENVLAAAGEVHLERCIKDLKERFAKVSLEVSPPLVSYKETIEGDTSNPLQNVILLSG 632 (876)
Q Consensus 554 ~~gL~~L~~~DP~l~v~~~-etGE~vl~g~GElHLe~~l~dL~~~fa~vei~vs~P~V~yrETI~~~~~~~~~~~~~~~~ 632 (876)
.+||++|+++||++++.++ ||||++|+|+||||||+|++||+++| +++|.+++|.|+|||||.+++..
T Consensus 425 ~~~L~~l~~eDp~l~v~~~~et~e~i~~g~Gelhlei~~~rL~~~~-~v~v~~~~p~V~yrEti~~~~~~---------- 493 (691)
T 1dar_A 425 SQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLKREF-KVDANVGKPQVAYRETITKPVDV---------- 493 (691)
T ss_dssp --------CCCCSCEEEC-----CEEEEESCCC---------CCCE-EEBTTTBCCCBCCEEECSSCEEE----------
T ss_pred HHHHHHHHhhCCeEEEEEcCCCCcEEEEeCCHHHHHHHHHHHHHhh-CceEEEeCCeEEEEEeeccceee----------
Confidence 9999999999999999994 89999999999999999999999999 99999999999999999875311
Q ss_pred CcceEEeecCCCc---eEEEEEeecCChh
Q 047363 633 SSDYFEKTTPNGR---CVVRVQVMKLPFT 658 (876)
Q Consensus 633 ~~~~~~~~t~n~~---~~i~v~a~PLp~~ 658 (876)
.....+..+++ .+++++++|||++
T Consensus 494 --~~~~~kq~gg~~~~~~v~~~~ePl~~g 520 (691)
T 1dar_A 494 --EGKFIRQTGGRGQYGHVKIKVEPLPRG 520 (691)
T ss_dssp --EEEEEECCSSSCEEEEEEEEEEECCTT
T ss_pred --eeeeccccCCCCceEEEEEEEEECCCC
Confidence 12233444443 5899999999874
No 6
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=100.00 E-value=1.4e-79 Score=735.64 Aligned_cols=442 Identities=24% Similarity=0.337 Sum_probs=351.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhhCCCCccccc--CCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCc
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAATGGGLLHPKL--AGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHM 85 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~--~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~ 85 (876)
+||||||+||+|||||||+++|++. +|.+++.. .+..+++|+++.|++|||||+++.+++.|++++|||||||||+
T Consensus 1 kIRNi~IiaHvD~GKTTL~e~LL~~--~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~ 78 (638)
T 3j25_A 1 KIINIGVLAHVDAGKTTLTESLLYN--SGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHM 78 (638)
T ss_dssp CCCCCEEECCSTTSSHHHHHHHHHH--HTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSS
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHHH--cCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcH
Confidence 6999999999999999999999999 77776542 2345799999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccccccccChHHHHHHHHHHHHHhhhhh
Q 047363 86 DFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLISELKLTPLEAYNRLLRIVHEVNGIM 165 (876)
Q Consensus 86 dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~~e~~~~~~~~~~~l~~~l~~vn~~~ 165 (876)
||..|+.++++++||||+||||++|++.||+.+|+++.++++|+|+|||||||+++++...+++++++|.
T Consensus 79 DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~~a~~~~~~~~i~~~l~---------- 148 (638)
T 3j25_A 79 DFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQNGIDLSTVYQDIKEKLS---------- 148 (638)
T ss_dssp STHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSSSCCSHHHHHHHHHTTC----------
T ss_pred HHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEeccccccCCHHHHHHHHHHHhC----------
Confidence 9999999999999999999999999999999999999999999999999999999986544443333221
Q ss_pred hhccccccccccccccccCcccccccccccccccccccccCCCCcEEEEeccCCCccchHHHHHHHHHhcCCCHHHHHHh
Q 047363 166 SAYKSEKYLSDVDSLLSVPSEKLGDENLQFIEDDEEDTFQPQKGNVAFVCGLDGWGFSISEFAEFYATKLGASTAALEKA 245 (876)
Q Consensus 166 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~~gnV~f~Sa~~Gw~ftl~~fa~~y~~k~~~~~~~l~k~ 245 (876)
. ..... ....
T Consensus 149 -~---~~~~~------------------------~~~~------------------------------------------ 158 (638)
T 3j25_A 149 -A---EIVIK------------------------QKVE------------------------------------------ 158 (638)
T ss_dssp -C---CCCCC------------------------CCCC------------------------------------------
T ss_pred -C---Ccccc------------------------ceeE------------------------------------------
Confidence 0 00000 0000
Q ss_pred hcccceecCCCcccccccCCCCCCCCCCchhhhhchhHHHHHHHHcCCCCcHHHHHHHHHHcCCCCCHHHHhccChHHHH
Q 047363 246 LWGPRYFNPKTKMIVGKKGISTGTKARPMFVQFVLEPLWQVYQAALEPDGDKGVLEKVIKSFNLSIPRRELQNKDPKAVL 325 (876)
Q Consensus 246 LWGd~y~~~ktkk~~~~~~~~~~~~~~p~Fv~fiL~pi~~l~~~v~~~d~~~~~l~k~l~~~g~~l~~~~l~~~~~k~ll 325 (876)
+|.+.... .|.. ...++.+++.+++ ++++|++ +..++..++.....+...
T Consensus 159 ~~~~~~~~--------------------~~~~------~~~~e~~~e~~d~--l~e~~~~--~~~~~~~~~~~~~~~~~~ 208 (638)
T 3j25_A 159 LYPNVCVT--------------------NFTE------SEQWDTVIEGNDD--LLEKYMS--GKSLEALELEQEESIRFQ 208 (638)
T ss_dssp SCGGGCCC--------------------CCCC------HHHHHHHHHHHCH--HHHHHHH--HCCCCSHHHHHHHHHHHH
T ss_pred eecccccc--------------------ccch------hhhhhhhhcccHH--HHhhhcc--CCccchHHHHHHHhhhhc
Confidence 00000000 0000 0234555555666 9999998 456677777665666666
Q ss_pred HHhhhccccc-------HHHHHHHHhhcCCCcccccchhhhcccccccccCCcccccccchhhhhhhhhcccCCCCCCCe
Q 047363 326 QAVLSHWLPL-------SDAILSMVVKCIPDPISAQSYRISRLLPKREILDNDVDCNVLTEADFVRKSVEVCNSSPEAPC 398 (876)
Q Consensus 326 ~~v~~~~lp~-------~~~lLd~i~~~lPsP~~a~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~cd~~~~~pl 398 (876)
...+.+++++ .+.|||+|++++|+|... +++|+
T Consensus 209 ~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~~p~p~~~----------------------------------------~~~~~ 248 (638)
T 3j25_A 209 NCSLFPLYHGSAKSNIGIDNLIEVITNKFYSSTHR----------------------------------------GPSEL 248 (638)
T ss_dssp HTSCCCCCCCCSTTCCSHHHHHHHHHHSCCCSGGG----------------------------------------SCCCC
T ss_pred ccccccccccccccCCCchhHhhhhhccccCcccc----------------------------------------hhhhh
Confidence 6666777766 389999999999999521 34789
Q ss_pred EEEEEEeeeecccccCCCCCCccccccccCCCCCCCCccceEEEEEEEeCccCCCCEEEEeccccCCcchhhhcccccee
Q 047363 399 VAFVSKMFAVPIKMLPQRGSNGEILDNYADKGGNGESEECFLAFARIFSGVLYSGQRVFVLSALYDPLKVESMQKHIQEA 478 (876)
Q Consensus 399 v~~V~K~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iaf~RV~SGtL~~G~~v~vlg~~y~~~~~~~~~~~~~~~ 478 (876)
+++|||+.++++.. .++|+|||||+|++||.|++.+. .++
T Consensus 249 ~~~Vfk~~~d~~~G--------------------------~la~~RV~sG~l~~g~~v~~~~~--------------~~~ 288 (638)
T 3j25_A 249 CGNVFKIEYTKKRQ--------------------------RLAYIRLYSGVLHLRDSVRVSEK--------------EKI 288 (638)
T ss_dssp CBEEBCCCCCSTTC--------------------------CCCBCCBSSBCCCSCCCSSSCCC--------------CCS
T ss_pred cceeeeeeeeccCc--------------------------eEEEEEEEcCcccCCCccccccC--------------cce
Confidence 99999999887631 48999999999999999865321 236
Q ss_pred EEeEEEEecCCceeecceeeCCCeEEEecCCceeeccceecCCCCcccCCCccccCCceeEEEEeeCCCccHHHHHHHHH
Q 047363 479 ELQSLYLMMGQGLKPVASAKAGNVVAIRGLGQQILKSATLSSTRNCWPFSSMVFQVSPTLRVAIEPSDPADMGALMKGLR 558 (876)
Q Consensus 479 ~I~~L~l~~G~~~~~v~~v~AGnIv~I~GL~~~i~k~~Tl~s~~~~~~~~~~~~~~~Pvv~vaIEP~~~~d~~kL~~gL~ 558 (876)
+|.++|.++|++++++++++|||||+|.|. . +..++|+++....+.+.++.+ +.|++++||||.+++|++||.+||+
T Consensus 289 ~v~~l~~~~g~~~~~v~~a~aGdIv~i~g~-~-~~~~~tl~d~~~~~~~~~i~~-p~Pv~~~aiep~~~~d~~kL~~aL~ 365 (638)
T 3j25_A 289 KVTEMYTSINGELCKIDRAYSGEIVILQNE-F-LKLNSVLGDTKLLPQRKKIEN-PHPLLQTTVEPSKPEQREMLLDALL 365 (638)
T ss_dssp SBCCCCSSCCCCBSCCCTTBCCCCSCCCSS-S-CSSEECSSSSSSGGGCSCCCC-CCCCCCCEEECCSHHHHHHHHHHHH
T ss_pred eEEeeecccccccccccccccceEEEEecc-c-cccCceecCCCCcccccCccC-CCccceeeeccCChHHHHHHHHHHH
Confidence 899999999999999999999999999883 2 455778877666666666655 7999999999999999999999999
Q ss_pred HHHhcCCceEEEEc-cCCcEEEEecchhHHHHHHHHHHhhhccceEEEeCCeeeEEecCCCCCCCCccccccccCCcceE
Q 047363 559 LLNRADPFVEVSVS-SRGENVLAAAGEVHLERCIKDLKERFAKVSLEVSPPLVSYKETIEGDTSNPLQNVILLSGSSDYF 637 (876)
Q Consensus 559 ~L~~~DP~l~v~~~-etGE~vl~g~GElHLe~~l~dL~~~fa~vei~vs~P~V~yrETI~~~~~~~~~~~~~~~~~~~~~ 637 (876)
+|+++||++.+.++ +|||++|+||||||||+|+++|+++| |++|.+|+|.|+|||||.+++. +..
T Consensus 366 kL~~eDPsl~v~~~~et~e~il~g~GeLHLei~~~rL~~ef-gvev~~~~P~V~yrEti~~~~~-------------~~~ 431 (638)
T 3j25_A 366 EISDSDPLLRYYVDSTTHEIILSFLGKVQMEVISALLQEKY-HVEIELKEPTVIYMERPLKNAE-------------YTI 431 (638)
T ss_dssp HHHHTCTTCCCCCCSSSSCCCCCCSSHHHHHHHHHHHTTTT-CCCCEEECCCCCCCBCCCSCCE-------------ECC
T ss_pred HHhhcCCeeEEEecCCCceEEEccccHHHHHHHHHHHHHHh-CCcEEEeCCceeEEEEecccce-------------EEE
Confidence 99999999999985 79999999999999999999999999 9999999999999999976531 111
Q ss_pred EeecCC--CceEEEEEeecCChh
Q 047363 638 EKTTPN--GRCVVRVQVMKLPFT 658 (876)
Q Consensus 638 ~~~t~n--~~~~i~v~a~PLp~~ 658 (876)
...+.+ ....+.++++|+|.+
T Consensus 432 ~~~~~~~~~~~~v~~~~eP~~~~ 454 (638)
T 3j25_A 432 HIEVPPNPFWASIGLSVSPLPLG 454 (638)
T ss_dssp CCCSSSCCCCCCCCEECCCCCSS
T ss_pred EEecCCCCceEEEEEEEecccCC
Confidence 112222 235677888888654
No 7
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=100.00 E-value=1.5e-70 Score=660.34 Aligned_cols=476 Identities=24% Similarity=0.304 Sum_probs=374.7
Q ss_pred CCCCCCCCceEEEEEeCCCCcHHHHHHHHHHhhCCCCccccc--CCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEE
Q 047363 1 MGDSDTRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKL--AGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINL 78 (876)
Q Consensus 1 m~~~~~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~--~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inl 78 (876)
|.+....+.++|+|+||+|||||||+++|++. .+.+.... .....++|+.+.|++||+|+......+.+.++.+||
T Consensus 1 ~~s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~--~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nl 78 (665)
T 2dy1_A 1 MGTEGGAMIRTVALVGHAGSGKTTLTEALLYK--TGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFL 78 (665)
T ss_dssp -----CCCEEEEEEEESTTSSHHHHHHHHHHH--TTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEE
T ss_pred CCCCccCCCcEEEEECCCCChHHHHHHHHHHh--cCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEE
Confidence 55556678999999999999999999999988 44432211 112367899999999999999999999999999999
Q ss_pred EcCCCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccccccccChHHHHHHHHHHH
Q 047363 79 IDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLISELKLTPLEAYNRLLRIV 158 (876)
Q Consensus 79 IDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~~e~~~~~~~~~~~l~~~l 158 (876)
||||||.+|..++.++++.+|++++|+|+.+|+..++..+|+.+...++|+++|+||+|+. .+ ..+..+.+...+
T Consensus 79 iDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~-~~----~~~~~~~l~~~l 153 (665)
T 2dy1_A 79 LDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG-GD----YYALLEDLRSTL 153 (665)
T ss_dssp EECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC-CC----HHHHHHHHHHHH
T ss_pred EeCCCccchHHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEEEEecCCchh-hh----HHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999998 54 233333333222
Q ss_pred HHhhhhhhhccccccccccccccccCcccccccccccccccccccccCCCCcEEEEeccCCCccchHHHHHHHHHhcCCC
Q 047363 159 HEVNGIMSAYKSEKYLSDVDSLLSVPSEKLGDENLQFIEDDEEDTFQPQKGNVAFVCGLDGWGFSISEFAEFYATKLGAS 238 (876)
Q Consensus 159 ~~vn~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~~gnV~f~Sa~~Gw~ftl~~fa~~y~~k~~~~ 238 (876)
. +.. .. .+ |.+.+ ..+.++++
T Consensus 154 ~--~~~------~~---~~------Pi~~~-~~~~g~~d----------------------------------------- 174 (665)
T 2dy1_A 154 G--PIL------PI---DL------PLYEG-GKWVGLID----------------------------------------- 174 (665)
T ss_dssp C--SEE------EC---EE------EEEET-TEEEEEEE-----------------------------------------
T ss_pred C--Ccc------eE---Ee------eecCC-Ccccchhh-----------------------------------------
Confidence 2 000 00 00 11110 01111111
Q ss_pred HHHHHHhhcccceecCCCcccccccCCCCCCCCCCchhhhhchhHHHHHHHHcCCCCcHHHHHHHHHHcCCCCCHHHHhc
Q 047363 239 TAALEKALWGPRYFNPKTKMIVGKKGISTGTKARPMFVQFVLEPLWQVYQAALEPDGDKGVLEKVIKSFNLSIPRRELQN 318 (876)
Q Consensus 239 ~~~l~k~LWGd~y~~~ktkk~~~~~~~~~~~~~~p~Fv~fiL~pi~~l~~~v~~~d~~~~~l~k~l~~~g~~l~~~~l~~ 318 (876)
.+.+..| ||++.. +... .. ...|.+++.++.+++++++.+.|++ ++++|++ |..++.++++.
T Consensus 175 --~~~~~~~---~~~~g~--~~~~------~~-~~~~~~~~~~~r~~l~e~~~~~d~~--l~e~~l~--~~~l~~~~~~~ 236 (665)
T 2dy1_A 175 --VFHGKAY---RYENGE--EREA------EV-PPEERERVQRFRQEVLEAIVETDEG--LLEKYLE--GEEVTGEALEK 236 (665)
T ss_dssp --TTTTEEE---EEETTE--EEEE------CC-CGGGHHHHHHHHHHHHHHHHTTCHH--HHHHHHH--TCCCCHHHHHH
T ss_pred --hhhhhee---ecCCCc--eeEe------cC-CHHHHHHHHHHHHHHHHHHHhCCHH--HHHHHHC--CCCCCHHHHHH
Confidence 1112344 665532 3211 11 2468889999999999999988766 9999998 88999999987
Q ss_pred cChHHHHHHhhhcccccH-------HHHHHHHhhcCCCcccccchhhhcccccccccCCcccccccchhhhhhhhhcccC
Q 047363 319 KDPKAVLQAVLSHWLPLS-------DAILSMVVKCIPDPISAQSYRISRLLPKREILDNDVDCNVLTEADFVRKSVEVCN 391 (876)
Q Consensus 319 ~~~k~ll~~v~~~~lp~~-------~~lLd~i~~~lPsP~~a~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~cd 391 (876)
...+.+++..+.+|+++| +.||++|++++|+|.++.
T Consensus 237 ~~~~~~~~~~~~pv~~~SA~~~~Gv~~Ll~~i~~~lp~p~~~~------------------------------------- 279 (665)
T 2dy1_A 237 AFHEAVRRGLLYPVALASGEREIGVLPLLELILEALPSPTERF------------------------------------- 279 (665)
T ss_dssp HHHHHHHTTSCEEEEECBTTTTBSHHHHHHHHHHHSCCHHHHH-------------------------------------
T ss_pred HHHHHHHhCCeeEEEEeecccCcCHHHHHHHHHHhCCCccccC-------------------------------------
Confidence 666666665555676664 899999999999995320
Q ss_pred CCCCCCeEEEEEEeeeecccccCCCCCCccccccccCCCCCCCCccceEEEEEEEeCccCCCCEEEEeccccCCcchhhh
Q 047363 392 SSPEAPCVAFVSKMFAVPIKMLPQRGSNGEILDNYADKGGNGESEECFLAFARIFSGVLYSGQRVFVLSALYDPLKVESM 471 (876)
Q Consensus 392 ~~~~~plv~~V~K~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iaf~RV~SGtL~~G~~v~vlg~~y~~~~~~~~ 471 (876)
+++|++++|||++.+++. ..++|+|||||+|++||+|++.+
T Consensus 280 --~~~p~~~~V~k~~~d~~~--------------------------G~~~~~rV~sG~l~~g~~v~~~~----------- 320 (665)
T 2dy1_A 280 --GDGPPLAKVFKVQVDPFM--------------------------GQVAYLRLYRGRLKPGDSLQSEA----------- 320 (665)
T ss_dssp --CSCSCEEEEEEEEEETTT--------------------------EEEEEEEEEESEECTTEEEBCTT-----------
T ss_pred --CCCCeEEEEEEEEEcCCC--------------------------CeEEEEEEcccEEecCCEEEcCC-----------
Confidence 457999999999998763 14899999999999999996432
Q ss_pred ccccceeEEeEEEEecCCceeecceeeCCCeEEEecCCceeeccceecCCCCc--ccCCCccccCCceeEEEEeeCCCcc
Q 047363 472 QKHIQEAELQSLYLMMGQGLKPVASAKAGNVVAIRGLGQQILKSATLSSTRNC--WPFSSMVFQVSPTLRVAIEPSDPAD 549 (876)
Q Consensus 472 ~~~~~~~~I~~L~l~~G~~~~~v~~v~AGnIv~I~GL~~~i~k~~Tl~s~~~~--~~~~~~~~~~~Pvv~vaIEP~~~~d 549 (876)
..++|++|+.++|++.+++++|+|||||+|.|+++ +.+|+||++.... .+++++.+ +.|+++++|+|.+++|
T Consensus 321 ----~~~~v~~l~~~~g~~~~~v~~a~aG~iv~i~gl~~-~~~Gdtl~~~~~~~~~~l~~~~~-~~P~~~~~i~p~~~~d 394 (665)
T 2dy1_A 321 ----GQVRLPHLYVPMGKDLLEVEEAEAGFVLGVPKAEG-LHRGMVLWQGEKPESEEVPFARL-PDPNVPVALHPKGRTD 394 (665)
T ss_dssp ----SCEEESSEEEEETTEEEEESCEETTCEEEESSCTT-CCTTCEEESSSCCCGGGSCCCCC-CCCCEEEEEEESSHHH
T ss_pred ----CeEEEeEEEEEeCCCeeECCEECCCCEEEEeCCcc-CccCCEEecCCCccccccCCCCC-CCceEEEEEEECChhh
Confidence 23799999999999999999999999999999998 5699999987665 68888887 5799999999999999
Q ss_pred HHHHHHHHHHHHhcCCceEEEEc-cCCcEEEEecchhHHHHHHHHHHhhhccceEEEeCCeeeEEecCCCCCCCCccccc
Q 047363 550 MGALMKGLRLLNRADPFVEVSVS-SRGENVLAAAGEVHLERCIKDLKERFAKVSLEVSPPLVSYKETIEGDTSNPLQNVI 628 (876)
Q Consensus 550 ~~kL~~gL~~L~~~DP~l~v~~~-etGE~vl~g~GElHLe~~l~dL~~~fa~vei~vs~P~V~yrETI~~~~~~~~~~~~ 628 (876)
.+||.+||++|.++||++++.++ ||||++|+|+||||||+|+++|+ +| ++++.+++|.|+|||||.+++..
T Consensus 395 ~~kl~~~L~~l~~edp~l~v~~~~et~e~i~~g~Gelhlei~~~rl~-~~-~v~v~~~~p~V~yrEti~~~~~~------ 466 (665)
T 2dy1_A 395 EARLGEALRKLLEEDPSLKLERQEETGELLLWGHGELHLATAKERLQ-DY-GVEVEFSVPKVPYRETIKKVAEG------ 466 (665)
T ss_dssp HHHHHHHHHHHHHHCTTSEEEECTTTCCEEEEESSHHHHHHHHHHHH-HT-TCCEEEECCCCCCEEEESSCEEE------
T ss_pred HHHHHHHHHHHHHhCCeEEEEEcCCCCCEEEEecCHHHHHHHHHHHH-HC-CceEEEeCCEEEEEEeeccceee------
Confidence 99999999999999999999995 89999999999999999999999 99 99999999999999999875411
Q ss_pred cccCCcceEEeecCCCc---eEEEEEeecCC
Q 047363 629 LLSGSSDYFEKTTPNGR---CVVRVQVMKLP 656 (876)
Q Consensus 629 ~~~~~~~~~~~~t~n~~---~~i~v~a~PLp 656 (876)
. ....+..+++ ..++++++|||
T Consensus 467 -----~-~~~~k~~gg~g~~~~v~~~~eP~~ 491 (665)
T 2dy1_A 467 -----Q-GKYKKQTGGHGQYGDVWLRLEPAS 491 (665)
T ss_dssp -----E-EEEEEEETTEEEEEEEEEEEEECS
T ss_pred -----e-eecccccCCCcceEEEEEEEEECC
Confidence 1 1222333333 46889999997
No 8
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=100.00 E-value=1.5e-72 Score=662.41 Aligned_cols=452 Identities=21% Similarity=0.249 Sum_probs=315.0
Q ss_pred CCCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccc------cCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEE
Q 047363 6 TRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPK------LAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLI 79 (876)
Q Consensus 6 ~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~------~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlI 79 (876)
.+++|||||+||+|||||||+++|++. +|.|.+. ..+..+++|+.+.|++|||||+++.+++.|++++||||
T Consensus 28 ~~r~RNiaIiaHvdaGKTTLtE~lL~~--tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlI 105 (548)
T 3vqt_A 28 AARRRTFAIISHPDAGKTTLTEKLLLF--GGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLL 105 (548)
T ss_dssp HHTEEEEEEECCTTSSHHHHHHHHHHH--TTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEE
T ss_pred ccccceEEEEeCCCCCHHHHHHHHHHh--cCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEE
Confidence 358999999999999999999999999 7777542 12334789999999999999999999999999999999
Q ss_pred cCCCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccccccccChHHHHHHHHHHHH
Q 047363 80 DSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLISELKLTPLEAYNRLLRIVH 159 (876)
Q Consensus 80 DTPGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~~e~~~~~~~~~~~l~~~l~ 159 (876)
|||||+||..|+.++|+++||||+||||++|+++||+.+|++|.++++|+++|||||||.++++....++++++|..
T Consensus 106 DTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~~ad~~~~~~~i~~~l~~--- 182 (548)
T 3vqt_A 106 DTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDREALHPLDVMADIEQHLQI--- 182 (548)
T ss_dssp CCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSCCCCHHHHHHHHHHHHTS---
T ss_pred eCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceEEEEecccchhcchhHhhhhhhhhcCC---
Confidence 99999999999999999999999999999999999999999999999999999999999998854333333333311
Q ss_pred HhhhhhhhccccccccccccccccCcccccccccccccccc--cccccCCCCcEEEEeccCCCccchHHHHHHHHHhcCC
Q 047363 160 EVNGIMSAYKSEKYLSDVDSLLSVPSEKLGDENLQFIEDDE--EDTFQPQKGNVAFVCGLDGWGFSISEFAEFYATKLGA 237 (876)
Q Consensus 160 ~vn~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~f~p~~gnV~f~Sa~~Gw~ftl~~fa~~y~~k~~~ 237 (876)
+.+. +..|++.+. .+.++++... .+.|++..|...+...
T Consensus 183 --~~~p---------------~~~Pig~~~-~f~g~vdl~~~~~~~~~~~~~~~~~~~~--------------------- 223 (548)
T 3vqt_A 183 --ECAP---------------MTWPIGMGS-SFKGTYDLLHKQLHLFSATHGGRIQSGI--------------------- 223 (548)
T ss_dssp --EEEE---------------SEEEESCGG-GCCEEEETTTTEEEECC-------CCCE---------------------
T ss_pred --ceEe---------------EEeeeecCC-cccceEeeeeeeeeecccccCCcccccc---------------------
Confidence 1110 011333322 3344443222 2233322211100000
Q ss_pred CHHHHHHhhcccceecCCCcccccccCCCCCCCCCCchhhhhchhHHH-HHHHHcCCCCcHHHHHHHHHHcCCCCCHHHH
Q 047363 238 STAALEKALWGPRYFNPKTKMIVGKKGISTGTKARPMFVQFVLEPLWQ-VYQAALEPDGDKGVLEKVIKSFNLSIPRREL 316 (876)
Q Consensus 238 ~~~~l~k~LWGd~y~~~ktkk~~~~~~~~~~~~~~p~Fv~fiL~pi~~-l~~~v~~~d~~~~~l~k~l~~~g~~l~~~~l 316 (876)
......++... ......+. ....++ ++...+..
T Consensus 224 -------------------------------------~~~~~~~~~~~~~~~~~~~~--~~~~~~-l~~~~~~~------ 257 (548)
T 3vqt_A 224 -------------------------------------VIHGADDPQLDEYLGDQAEQ--LRMDLA-LLEEAGTP------ 257 (548)
T ss_dssp -------------------------------------ECCSTTCTHHHHHHGGGHHH--HHHHHH-HHHHHCCC------
T ss_pred -------------------------------------cccccchHHHHHHHHHHHHH--hhhHHH-HHhhccCc------
Confidence 00000001000 00000000 000111 11111222
Q ss_pred hccChHHHHHHhhhccccc-------HHHHHHHHhhcCCCcccccchhhhcccccccccCCcccccccchhhhhhhhhcc
Q 047363 317 QNKDPKAVLQAVLSHWLPL-------SDAILSMVVKCIPDPISAQSYRISRLLPKREILDNDVDCNVLTEADFVRKSVEV 389 (876)
Q Consensus 317 ~~~~~k~ll~~v~~~~lp~-------~~~lLd~i~~~lPsP~~a~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (876)
.+.+.++++-+.++|++ .+.|||+|++++|||.+...... ..
T Consensus 258 --~~~e~~~~g~~~PV~~gSA~~~~Gv~~LLd~iv~~~PsP~~~~~~~~----------------------------~~- 306 (548)
T 3vqt_A 258 --FDEERYLKGELTPVFFGSAINNFGVREMLDMFVEFAPGPQPRPAATR----------------------------VV- 306 (548)
T ss_dssp --CCHHHHHTTSEEEEEECBGGGTBSHHHHHHHHHHHSCCSCCEEBSSS----------------------------EE-
T ss_pred --hhHHHHHhCCcceeeecccccCcCHHHHHHHHHHhCCCCCCcccccc----------------------------cc-
Confidence 23344555556666665 38999999999999965321100 01
Q ss_pred cCCCCCCCeEEEEEEeeeecccccCCCCCCccccccccCCCCCCCCccceEEEEEEEeCccCCCCEEEEeccccCCcchh
Q 047363 390 CNSSPEAPCVAFVSKMFAVPIKMLPQRGSNGEILDNYADKGGNGESEECFLAFARIFSGVLYSGQRVFVLSALYDPLKVE 469 (876)
Q Consensus 390 cd~~~~~plv~~V~K~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iaf~RV~SGtL~~G~~v~vlg~~y~~~~~~ 469 (876)
.+ .+.|+.++|||+.++.+. .....++|+|||||+|++||+|++.+. +
T Consensus 307 ~~--~~~p~~a~vfKi~~~~~~-----------------------~~~Grla~~RV~sG~l~~g~~v~~~~~------~- 354 (548)
T 3vqt_A 307 EP--GEEAFTGVVFKIQANMDK-----------------------AHRDRMAFLRICSGTFTRGMRLKHHRT------G- 354 (548)
T ss_dssp CT--TCSSCEEEEEEEECC------------------------------CEEEEEEEESCEETTCEEEETTT------T-
T ss_pred CC--CCcCceEEEEEEEccCCc-----------------------CCCCeEEEEEEecceecCCCEEEeecc------c-
Confidence 11 457999999999876321 011259999999999999999976532 1
Q ss_pred hhccccceeEEeEEEEecCCceeecceeeCCCeEEEecCCceeeccceecCCCCcccCCCccccCCceeEEEEeeCCCcc
Q 047363 470 SMQKHIQEAELQSLYLMMGQGLKPVASAKAGNVVAIRGLGQQILKSATLSSTRNCWPFSSMVFQVSPTLRVAIEPSDPAD 549 (876)
Q Consensus 470 ~~~~~~~~~~I~~L~l~~G~~~~~v~~v~AGnIv~I~GL~~~i~k~~Tl~s~~~~~~~~~~~~~~~Pvv~vaIEP~~~~d 549 (876)
++++|+++++++|+++++|++|+|||||+|.|+++ +..|+||++.....++.++++ +.|+++++|+|++++|
T Consensus 355 ------~~~rv~~l~~~~g~~~~~v~~a~AGdIvai~gl~~-~~~GDTl~~~~~~~~~~~i~~-~~P~~~~av~p~~~~d 426 (548)
T 3vqt_A 355 ------KDVTVANATIFMAQDRTGVEEAFPGDIIGIPNHGT-IKIGDTFTESKEVLKFVGIPN-FAPEHFRRVRLKNPLK 426 (548)
T ss_dssp ------EEEECTTCEECCCSSCCSSCEECTTCEEEEECSSC-CCTTCEEESSSSCCCBCCCEE-ECCSEEEEEEESCGGG
T ss_pred ------cccccchhhhhccccccccCEEecCCEEEecCCcc-CccCCEecCCCCccccCCCCC-CCCcceeeeeeCCchh
Confidence 35899999999999999999999999999999998 568899998877778888877 5899999999999999
Q ss_pred HHHHHHHHHHHHhcCCceEEEEccCCcEEEEecchhHHHHHHHHHHhhhccceEE-----EeCCeeeEEecCCCC
Q 047363 550 MGALMKGLRLLNRADPFVEVSVSSRGENVLAAAGEVHLERCIKDLKERFAKVSLE-----VSPPLVSYKETIEGD 619 (876)
Q Consensus 550 ~~kL~~gL~~L~~~DP~l~v~~~etGE~vl~g~GElHLe~~l~dL~~~fa~vei~-----vs~P~V~yrETI~~~ 619 (876)
.+||.+||++|.++||+..++.++|||++|+||||||||+++++|+++| ||++. ++.|+|+|||||+..
T Consensus 427 ~~kl~~~L~~L~eed~~~v~~~~et~e~il~g~GeLHLeI~~erL~~ey-~vev~~e~v~~~~P~V~YrEti~~~ 500 (548)
T 3vqt_A 427 AKQLQKGLEQLAEEGAVQLFRPLVNNDYILGAVGVLQFDVIVARLADEY-GVDAVYEGVSTHTARWVYCEDKKIF 500 (548)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEESSSCCCEEEESSTHHHHHHHHHHHHHH-CCCEEEEECSCCEEEEEECSCHHHH
T ss_pred HHHHHHHHHHhhhcCceeEEEECCCCcEEEEEECHHHHHHHHHHHHHHh-CCCEEEeeccccCceEEecCCccch
Confidence 9999999999999999766666789999999999999999999999999 99966 578999999999653
No 9
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=100.00 E-value=3.9e-58 Score=538.00 Aligned_cols=448 Identities=21% Similarity=0.315 Sum_probs=304.8
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCCCccccc------CCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEc
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKL------AGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLID 80 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~------~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlID 80 (876)
.++|||+|+||+|||||||+++|+.. .|.+.... ....+++|+.+.|++||+|+.+..+.+.++++.++|||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~--~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liD 88 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLF--GQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLD 88 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHS--CC-------------------------------CCTTEEEEEETTEEEEEEC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhh--cCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEE
Confidence 56899999999999999999999987 55553211 11245789999999999999999999999999999999
Q ss_pred CCCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccccccccChHHHHHHHHHHHHH
Q 047363 81 SPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLISELKLTPLEAYNRLLRIVHE 160 (876)
Q Consensus 81 TPGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~~e~~~~~~~~~~~l~~~l~~ 160 (876)
||||.+|..++.++++.+|++|+|+|+.+|+..++..+|+.+...++|+++|+||+|+..++ +.++...++..+..
T Consensus 89 TPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~Dl~~~~----~~~~~~~i~~~l~~ 164 (529)
T 2h5e_A 89 TPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRD----PMELLDEVENELKI 164 (529)
T ss_dssp CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEEEECTTSCCSC----HHHHHHHHHHHHCC
T ss_pred CCCChhHHHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEEEEcCcCCcccc----HHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999998754 23333333332220
Q ss_pred hhhhhhhccccccccccccccccCccccccccccccccccc--ccccCCCCcEEEEeccCCCccchHHHHHHHHHhcCCC
Q 047363 161 VNGIMSAYKSEKYLSDVDSLLSVPSEKLGDENLQFIEDDEE--DTFQPQKGNVAFVCGLDGWGFSISEFAEFYATKLGAS 238 (876)
Q Consensus 161 vn~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~f~p~~gnV~f~Sa~~Gw~ftl~~fa~~y~~k~~~~ 238 (876)
+.+...+ |.+.+. .+.++.+.... ..|.+..|.
T Consensus 165 -~~~~~~~---------------pi~sa~-~~~Gv~dl~~~~~~~~~~~~g~---------------------------- 199 (529)
T 2h5e_A 165 -GCAPITW---------------PIGCGK-LFKGVYHLYKDETYLYQSGKGH---------------------------- 199 (529)
T ss_dssp -EEEESEE---------------EESCGG-GCCEEEETTTTEEEECCTTCCS----------------------------
T ss_pred -Cccceec---------------ceeccc-CcceeeehhhhhHhhhcccCCC----------------------------
Confidence 0000000 111000 11111111110 111110000
Q ss_pred HHHHHHhhcccceecCCCcccccccCCCCCCCCCCchhhhhchhHHHHHHHHcCCCCcHHHHHHHHHHcCCCCCHHHHhc
Q 047363 239 TAALEKALWGPRYFNPKTKMIVGKKGISTGTKARPMFVQFVLEPLWQVYQAALEPDGDKGVLEKVIKSFNLSIPRRELQN 318 (876)
Q Consensus 239 ~~~l~k~LWGd~y~~~ktkk~~~~~~~~~~~~~~p~Fv~fiL~pi~~l~~~v~~~d~~~~~l~k~l~~~g~~l~~~~l~~ 318 (876)
++..... .|.+ -++ .+.+.+ +++ +++++++. ..+...++..
T Consensus 200 -------------------~~~~~~~-------i~~~----~~~--~l~e~~---~~~--~~~~~~e~--~~l~~~~~~~ 240 (529)
T 2h5e_A 200 -------------------TIQEVRI-------VKGL----NNP--DLDAAV---GED--LAQQLRDE--LELVKGASNE 240 (529)
T ss_dssp -------------------SCCCCCE-------ECCS----SCH--HHHHHH---CHH--HHHHHHHH--HHHHHHHSCC
T ss_pred -------------------ccccccc-------CCCC----CHH--HHHHhh---CHH--HHHHhhcc--cchhhhhhhh
Confidence 0000000 0000 000 111111 111 45555542 2233344455
Q ss_pred cChHHHHHHhhhcccccH-------HHHHHHHhhcCCCcccccchhhhcccccccccCCcccccccchhhhhhhhhcccC
Q 047363 319 KDPKAVLQAVLSHWLPLS-------DAILSMVVKCIPDPISAQSYRISRLLPKREILDNDVDCNVLTEADFVRKSVEVCN 391 (876)
Q Consensus 319 ~~~k~ll~~v~~~~lp~~-------~~lLd~i~~~lPsP~~a~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~cd 391 (876)
.+.+.+++..+.+||++| +.||++|++++|+|...+... ..|+
T Consensus 241 ~~~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~~P~P~~~~~~~------------------------------~~~~ 290 (529)
T 2h5e_A 241 FDKELFLAGEITPVFFGTALGNFGVDHMLDGLVEWAPAPMPRQTDT------------------------------RTVE 290 (529)
T ss_dssp CCHHHHHTTSEEEEEECBTTTTBSHHHHHHHHHHHSCSSCCEEBSS------------------------------CEEC
T ss_pred hhHHHHHhCceeEEEeeecccCCCHHHHHHHHHHhCCCCCcccccc------------------------------cccC
Confidence 567777777888998875 799999999999997543210 1222
Q ss_pred CCCCCCeEEEEEEeee--ecccccCCCCCCccccccccCCCCCCCCccceEEEEEEEeCccCCCCEEEEeccccCCcchh
Q 047363 392 SSPEAPCVAFVSKMFA--VPIKMLPQRGSNGEILDNYADKGGNGESEECFLAFARIFSGVLYSGQRVFVLSALYDPLKVE 469 (876)
Q Consensus 392 ~~~~~plv~~V~K~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iaf~RV~SGtL~~G~~v~vlg~~y~~~~~~ 469 (876)
+ .++|++++|||+.+ ++. ....++|+|||||+|++||+|++.+. +
T Consensus 291 ~-~~~~~~~~vfKi~~~~d~~-------------------------~~G~i~~~RV~sG~l~~g~~v~~~~~------~- 337 (529)
T 2h5e_A 291 A-SEDKFTGFVFKIQANMDPK-------------------------HRDRVAFMRVVSGKYEKGMKLRQVRT------A- 337 (529)
T ss_dssp T-TCCSCEEEEEEECSSCCSS-------------------------SSCCCEEEEEEESCEETTCEEEETTT------T-
T ss_pred C-CCCCeEEEEEEEeeccCcC-------------------------CCceEEEEEEecCeEcCCCEEEEeeC------C-
Confidence 1 25899999999975 221 01249999999999999999987542 1
Q ss_pred hhccccceeEEeEEEEecCCceeecceeeCCCeEEEecCCceeeccceecCCCCcccCCCccccCCceeEEEEeeCCCcc
Q 047363 470 SMQKHIQEAELQSLYLMMGQGLKPVASAKAGNVVAIRGLGQQILKSATLSSTRNCWPFSSMVFQVSPTLRVAIEPSDPAD 549 (876)
Q Consensus 470 ~~~~~~~~~~I~~L~l~~G~~~~~v~~v~AGnIv~I~GL~~~i~k~~Tl~s~~~~~~~~~~~~~~~Pvv~vaIEP~~~~d 549 (876)
+.++|++++.++|.+.++|++|.|||||+|.|+++ +.+|+||++.. ...+.++.+ +.|+++++|+|.++.|
T Consensus 338 ------~~~~v~~i~~~~g~~~~~v~~a~aGdiv~i~~l~~-~~~Gdtl~~~~-~~~~~~~~~-~~P~~~~~v~~~~~~d 408 (529)
T 2h5e_A 338 ------KDVVISDALTFMAGDRSHVEEAYPGDILGLHNHGT-IQIGDTFTQGE-MMKFTGIPN-FAPELFRRIRLKDPLK 408 (529)
T ss_dssp ------EEEECSCEECCCC-----CCEECTTCEEEECCSSC-CCTTCEEESSC-CCCBCCCEE-ECCSEEEEEEESCC--
T ss_pred ------CEEEeceeeEEeCCCceEcceECCCCEEEEeccCC-CccCCEeecCC-ccccCCCCC-CCccEEEEEEECChHH
Confidence 34799999999999999999999999999999988 56799999765 457788876 5899999999999999
Q ss_pred HHHHHHHHHHHHhcCCceEEEE-ccCCcEEEEecchhHHHHHHHHHHhhhccceEEEeCCeeeEEecCCC
Q 047363 550 MGALMKGLRLLNRADPFVEVSV-SSRGENVLAAAGEVHLERCIKDLKERFAKVSLEVSPPLVSYKETIEG 618 (876)
Q Consensus 550 ~~kL~~gL~~L~~~DP~l~v~~-~etGE~vl~g~GElHLe~~l~dL~~~fa~vei~vs~P~V~yrETI~~ 618 (876)
.+||.+||++|.++|| +.+.. ++|||++|+|+||||||+++++|+++| ||+|.+++|.|+|||||..
T Consensus 409 ~~kl~~~L~~L~~ed~-~~~~~~~~t~~~il~~~Gelhlev~~~rl~~ey-~v~v~~~~~~v~y~eti~~ 476 (529)
T 2h5e_A 409 QKQLLKGLVQLSEEGA-VQVFRPISNNDLIVGAVGVLQFDVVVARLKSEY-NVEAVYESVNVATARWVEC 476 (529)
T ss_dssp -CTHHHHHHHHHHTTS-CEEEEETTSCCEEEEESSTHHHHHHHHHHHHHS-SCCEEEECCCCSEEEEEEC
T ss_pred HHHHHHHHHHHHhhCC-EEEEEeCCCCcEEEEEECHHHHHHHHHHHHHHh-CcEEEEecCceeEEEEEcC
Confidence 9999999999999998 77877 589999999999999999999999999 9999999999999999954
No 10
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=100.00 E-value=6.3e-56 Score=518.84 Aligned_cols=446 Identities=22% Similarity=0.304 Sum_probs=329.2
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCCCccccc------CCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEc
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKL------AGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLID 80 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~------~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlID 80 (876)
+++|||+|+||+|+|||||+++|++. .|.+.... ....++.|+.+.|++||+|+.++.+.+.|.++.++|||
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~--~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liD 88 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLF--GGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLD 88 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHH--TTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEEC
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhh--cCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEE
Confidence 57899999999999999999999988 66663221 11234678899999999999999999999999999999
Q ss_pred CCCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccccccccChHHHHHHHHHHHHH
Q 047363 81 SPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLISELKLTPLEAYNRLLRIVHE 160 (876)
Q Consensus 81 TPGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~~e~~~~~~~~~~~l~~~l~~ 160 (876)
||||.+|..++.++++.+|+||+|+|+.+|+..++..+|+++...++|+++|+||+|+..++ +.+....+...+..
T Consensus 89 TPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~Dl~~~~----~~~~l~ei~~~l~~ 164 (528)
T 3tr5_A 89 TPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDRDTRP----SIELLDEIESILRI 164 (528)
T ss_dssp CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTTSCCSC----HHHHHHHHHHHHCC
T ss_pred CCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCcccc----HHHHHHHHHHhhCC
Confidence 99999999999999999999999999999999999999999999999999999999998654 22333333322210
Q ss_pred hhhhhhhccccccccccccccccCccccccccccccccccc--ccccCCCCcEEEEeccCCCccchHHHHHHHHHhcCCC
Q 047363 161 VNGIMSAYKSEKYLSDVDSLLSVPSEKLGDENLQFIEDDEE--DTFQPQKGNVAFVCGLDGWGFSISEFAEFYATKLGAS 238 (876)
Q Consensus 161 vn~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~f~p~~gnV~f~Sa~~Gw~ftl~~fa~~y~~k~~~~ 238 (876)
.... ...|.+.+ ..|.++++.... +.|++..|.
T Consensus 165 -~~~~---------------~~~pig~~-~~f~gv~dl~~~~~~~~~~~~~~---------------------------- 199 (528)
T 3tr5_A 165 -HCAP---------------VTWPIGMG-KYFKGIYHLIEDAIYLYQPGKHE---------------------------- 199 (528)
T ss_dssp -EEEE---------------SEEEESCG-GGCCEEEETTTTEEEECCTTSSS----------------------------
T ss_pred -Ccee---------------eecccccC-CceeEEEEeecCEEEEecCCCCC----------------------------
Confidence 0000 00022222 234444443221 222211100
Q ss_pred HHHHHHhhcccceecCCCcccccccCCCCCCCCCCchhhhhchhHHHHHHHHcCCCCcHHHHHHHHHHcCCCCCHHHHhc
Q 047363 239 TAALEKALWGPRYFNPKTKMIVGKKGISTGTKARPMFVQFVLEPLWQVYQAALEPDGDKGVLEKVIKSFNLSIPRRELQN 318 (876)
Q Consensus 239 ~~~l~k~LWGd~y~~~ktkk~~~~~~~~~~~~~~p~Fv~fiL~pi~~l~~~v~~~d~~~~~l~k~l~~~g~~l~~~~l~~ 318 (876)
++... . .|. -.-++ .+.+.+. + .++++++.+ .+...+...
T Consensus 200 -------------------~~~~~------~--~~~---~~~~~--~~~~~l~----~--~~~~~~e~~--~l~~~~~~~ 239 (528)
T 3tr5_A 200 -------------------RVGES------E--RIE---GINNP--ELDKKLG----D--LASELRNEI--ELVKGASHP 239 (528)
T ss_dssp -------------------STTCS------C--EEE---CTTCH--HHHHHHT----H--HHHHHHHHH--HHHHHHSCC
T ss_pred -------------------ccccc------c--ccc---ccchH--HHHHHHH----H--HHHHHhhhc--chhhhhhhH
Confidence 00000 0 000 00111 0111111 1 244444422 222333333
Q ss_pred cChHHHHHHhhhcccccH-------HHHHHHHhhcCCCcccccchhhhcccccccccCCcccccccchhhhhhhhhcccC
Q 047363 319 KDPKAVLQAVLSHWLPLS-------DAILSMVVKCIPDPISAQSYRISRLLPKREILDNDVDCNVLTEADFVRKSVEVCN 391 (876)
Q Consensus 319 ~~~k~ll~~v~~~~lp~~-------~~lLd~i~~~lPsP~~a~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~cd 391 (876)
.+.+.++..-+.++|++| +.||++|++++|+|.+..... ..++
T Consensus 240 ~~~~~~~~~~~~PV~~gSA~~~~GV~~Lld~i~~~~p~p~~~~~~~------------------------------~~~~ 289 (528)
T 3tr5_A 240 FEREGYLKGELTPIFFGSAINNFGVGELLDAFVKEAPPPQGRETNS------------------------------RLVK 289 (528)
T ss_dssp CCHHHHHTTSEEEEEECBGGGTBSHHHHHHHHHHHSCCCCCBCBSS------------------------------SCBC
T ss_pred HHHHHHhcCceeEEEeccccCCccHHHHHHHHHHhCCCCCcccccc------------------------------eeeC
Confidence 346667777777787774 899999999999996533210 0112
Q ss_pred CCCCCCeEEEEEEeee--ec-ccccCCCCCCccccccccCCCCCCCCccceEEEEEEEeCccCCCCEEEEeccccCCcch
Q 047363 392 SSPEAPCVAFVSKMFA--VP-IKMLPQRGSNGEILDNYADKGGNGESEECFLAFARIFSGVLYSGQRVFVLSALYDPLKV 468 (876)
Q Consensus 392 ~~~~~plv~~V~K~~~--~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iaf~RV~SGtL~~G~~v~vlg~~y~~~~~ 468 (876)
+ .++|++++|||+.+ +| +. ..++|+|||||+|++||.|++.+ .+
T Consensus 290 ~-~~~~~~~~VFKi~~~~dp~~~--------------------------g~l~~~RV~sG~l~~g~~v~~~~------~~ 336 (528)
T 3tr5_A 290 P-EEEKFSGFVFKIQANMDPGHR--------------------------DRIAFLRIASGQYQKGMKAYHVR------LK 336 (528)
T ss_dssp T-TSSSCEEEEEEEEECCC-CCC--------------------------CEEEEEEEEESCEETTEEEEETT------TT
T ss_pred C-CcccceeEEEEEecccCccCC--------------------------ceEEEEEEecCeEcCCCEEEecC------CC
Confidence 1 36899999999986 55 31 15999999999999999997643 11
Q ss_pred hhhccccceeEEeEEEEecCCceeecceeeCCCeEEEecCCceeeccceecCCCCcccCCCccccCCceeEEEEeeCCCc
Q 047363 469 ESMQKHIQEAELQSLYLMMGQGLKPVASAKAGNVVAIRGLGQQILKSATLSSTRNCWPFSSMVFQVSPTLRVAIEPSDPA 548 (876)
Q Consensus 469 ~~~~~~~~~~~I~~L~l~~G~~~~~v~~v~AGnIv~I~GL~~~i~k~~Tl~s~~~~~~~~~~~~~~~Pvv~vaIEP~~~~ 548 (876)
++++|++++.++|+++++|++|.||||+++.|+++ +..|+||++. ....+.++.+ +.|++.++|+|+++.
T Consensus 337 -------~~~rv~~~~~~~~~~~~~v~~a~aGdI~~~~~l~~-~~~GDtl~~~-~~~~~~~~~~-~~P~~~~~i~~~~~~ 406 (528)
T 3tr5_A 337 -------KEIQINNALTFMAGKRENAEEAWPGDIIGLHNHGT-IQIGDTFTQG-ERFKFTGIPN-FASELFRLVRLKDPL 406 (528)
T ss_dssp -------EEEEESSCBCCBTTCSSCCSEECTTCEEEEEESSS-CCTTCEEESS-CCCCBCCCEE-ECCSEEEEEEESCGG
T ss_pred -------ceEEEeeeEEEeCCCeeECCEECCCCEEEEcCCCC-CccCCEEcCC-CCcccCCCCC-CCCCEEEEEEECChh
Confidence 35899999999999999999999999999999988 5789999973 3456777776 479999999999999
Q ss_pred cHHHHHHHHHHHHhcCCceEEEE-ccCCcEEEEecchhHHHHHHHHHHhhhccceEEEeCCeeeEEecCCC
Q 047363 549 DMGALMKGLRLLNRADPFVEVSV-SSRGENVLAAAGEVHLERCIKDLKERFAKVSLEVSPPLVSYKETIEG 618 (876)
Q Consensus 549 d~~kL~~gL~~L~~~DP~l~v~~-~etGE~vl~g~GElHLe~~l~dL~~~fa~vei~vs~P~V~yrETI~~ 618 (876)
|.+||.+||++|.+|||+ .+.. ++|||++|+||||||||+++++|+++| ||+|.+++|.|+|+|+|.+
T Consensus 407 d~~kl~~aL~~L~~ED~~-~~~~~~~~~~~il~~~G~lhlev~~~rL~~ey-~v~v~~~~~~v~~~~~i~~ 475 (528)
T 3tr5_A 407 KQKALLKGLTQLSEEGAT-QLFRPLDSNELILGAVGLLQFDVVAYRLENEY-NVKCVYESVNVVTARWVIC 475 (528)
T ss_dssp GHHHHHHHHHHHHHTTSC-EEEEETTCCCEEEEESSTHHHHHHHHHHHHHH-CCCEEEECCSCCEEEEEEC
T ss_pred HHHHHHHHHHHHHhcCCe-EEEEcCCCCCEEEEEEcHHHHHHHHHHHHHHh-CcEEEEecCceEEEEEecC
Confidence 999999999999999997 6666 589999999999999999999999999 9999999999999999965
No 11
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=100.00 E-value=2.7e-51 Score=483.87 Aligned_cols=362 Identities=28% Similarity=0.449 Sum_probs=277.6
Q ss_pred CCCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcC-----eEEEEEc
Q 047363 6 TRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKD-----YAINLID 80 (876)
Q Consensus 6 ~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~-----~~inlID 80 (876)
.+++|||+|+||+|||||||+++|++. +|.+..... ..+++|+.+.|++||+|++++.+.+.|.. +.+||||
T Consensus 3 ~~~irnI~IiGh~d~GKTTLi~rLl~~--tg~i~~~~~-~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliD 79 (600)
T 2ywe_A 3 QKNVRNFCIIAHVDHGKSTLADRLLEY--TGAISEREK-REQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLID 79 (600)
T ss_dssp GGGEEEEEEECC--CCHHHHHHHHHHH--HTC------------------------CCCCSEEEEEECTTSCEEEEEEEC
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHhc--cCCcccccc-cccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEE
Confidence 468999999999999999999999998 666654322 34688999999999999999989888863 8999999
Q ss_pred CCCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccccccccChHHHHHHHHHHHHH
Q 047363 81 SPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLISELKLTPLEAYNRLLRIVHE 160 (876)
Q Consensus 81 TPGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~~e~~~~~~~~~~~l~~~l~~ 160 (876)
||||.||..++.++++.+|+||+|||+.+|++.|+...|..+...++|+++|+||+|+..++ +++.. ++
T Consensus 80 TPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a~----~~~v~-------~e 148 (600)
T 2ywe_A 80 TPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSAD----VDRVK-------KQ 148 (600)
T ss_dssp CCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTSTTCC----HHHHH-------HH
T ss_pred CCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCccccC----HHHHH-------HH
Confidence 99999999999999999999999999999999999999999999999999999999998654 22221 22
Q ss_pred hhhhhhhccccccccccccccccCcccccccccccccccccccccCCCCcEEEEeccCCCccchHHHHHHHHHhcCCCHH
Q 047363 161 VNGIMSAYKSEKYLSDVDSLLSVPSEKLGDENLQFIEDDEEDTFQPQKGNVAFVCGLDGWGFSISEFAEFYATKLGASTA 240 (876)
Q Consensus 161 vn~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~~gnV~f~Sa~~Gw~ftl~~fa~~y~~k~~~~~~ 240 (876)
+...+. +.+ ..++++||+.|.+
T Consensus 149 l~~~lg-------------------------------------~~~--~~vi~vSAktg~G------------------- 170 (600)
T 2ywe_A 149 IEEVLG-------------------------------------LDP--EEAILASAKEGIG------------------- 170 (600)
T ss_dssp HHHTSC-------------------------------------CCG--GGCEECBTTTTBS-------------------
T ss_pred HHHhhC-------------------------------------CCc--ccEEEEEeecCCC-------------------
Confidence 211100 000 0245555555421
Q ss_pred HHHHhhcccceecCCCcccccccCCCCCCCCCCchhhhhchhHHHHHHHHcCCCCcHHHHHHHHHHcCCCCCHHHHhccC
Q 047363 241 ALEKALWGPRYFNPKTKMIVGKKGISTGTKARPMFVQFVLEPLWQVYQAALEPDGDKGVLEKVIKSFNLSIPRRELQNKD 320 (876)
Q Consensus 241 ~l~k~LWGd~y~~~ktkk~~~~~~~~~~~~~~p~Fv~fiL~pi~~l~~~v~~~d~~~~~l~k~l~~~g~~l~~~~l~~~~ 320 (876)
T Consensus 171 -------------------------------------------------------------------------------- 170 (600)
T 2ywe_A 171 -------------------------------------------------------------------------------- 170 (600)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHhhhcccccHHHHHHHHhhcCCCcccccchhhhcccccccccCCcccccccchhhhhhhhhcccCCCCCCCeEE
Q 047363 321 PKAVLQAVLSHWLPLSDAILSMVVKCIPDPISAQSYRISRLLPKREILDNDVDCNVLTEADFVRKSVEVCNSSPEAPCVA 400 (876)
Q Consensus 321 ~k~ll~~v~~~~lp~~~~lLd~i~~~lPsP~~a~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~cd~~~~~plv~ 400 (876)
.+.||+++++++|+|.. + +++|+.+
T Consensus 171 ---------------I~~Lle~I~~~lp~p~~--------------------------------------~--~~~pl~~ 195 (600)
T 2ywe_A 171 ---------------IEEILEAIVNRIPPPKG--------------------------------------D--PQKPLKA 195 (600)
T ss_dssp ---------------HHHHHHHHHHHSCCCCC--------------------------------------C--TTSCCEE
T ss_pred ---------------chHHHHHHHHhcccccc--------------------------------------c--ccCCcce
Confidence 11457778888898831 1 5688999
Q ss_pred EEEEeeeecccccCCCCCCccccccccCCCCCCCCccceEEEEEEEeCccCCCCEEEEeccccCCcchhhhccccceeEE
Q 047363 401 FVSKMFAVPIKMLPQRGSNGEILDNYADKGGNGESEECFLAFARIFSGVLYSGQRVFVLSALYDPLKVESMQKHIQEAEL 480 (876)
Q Consensus 401 ~V~K~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iaf~RV~SGtL~~G~~v~vlg~~y~~~~~~~~~~~~~~~~I 480 (876)
+|+|.+.+++. ..++++||+||+|++||.|+++.. + ...+|
T Consensus 196 lV~~~~~d~~~--------------------------G~v~~~rV~sG~l~~Gd~I~~~~~------~-------~~~~v 236 (600)
T 2ywe_A 196 LIFDSYYDPYR--------------------------GAVAFVRIFDGEVKPGDKIMLMST------G-------KEYEV 236 (600)
T ss_dssp EEEEEEEETTT--------------------------EEEEEEEEEESEECTTCEEEETTT------T-------EEEEC
T ss_pred eEEEEeecccc--------------------------eEEEEEEEEeCEEecCCEEEeccc------c-------ceEee
Confidence 99999988752 159999999999999999987531 1 24789
Q ss_pred eEEEEecCCceeecceeeCCCeEEEe-cC---CceeeccceecCCCCc--ccCCCccccCCceeEEEEeeCCCccHHHHH
Q 047363 481 QSLYLMMGQGLKPVASAKAGNVVAIR-GL---GQQILKSATLSSTRNC--WPFSSMVFQVSPTLRVAIEPSDPADMGALM 554 (876)
Q Consensus 481 ~~L~l~~G~~~~~v~~v~AGnIv~I~-GL---~~~i~k~~Tl~s~~~~--~~~~~~~~~~~Pvv~vaIEP~~~~d~~kL~ 554 (876)
.+++.+.+ ..++++++.||||+++. |+ ++ +..|+||+..... .+++++.+ ++|++.++|+|.++.|.++|.
T Consensus 237 ~~i~~~~~-~~~~v~~~~aGdi~~v~~gi~~~~~-~~~GDtl~~~~~~~~~~l~~~~~-~~P~v~~~i~p~~~~d~~~l~ 313 (600)
T 2ywe_A 237 TEVGAQTP-KMTKFDKLSAGDVGYIAASIKDVRD-IRIGDTITHAKNPTKEPVPGFQP-AKPMVYAGIYPAEDTTYEELR 313 (600)
T ss_dssp CEEEEESS-SEEEESCEETTCEEEEESSCCCTTS-SCTTCEEEESSSCCSSCCSCCCC-CCCCEEEEEEECTTCCHHHHH
T ss_pred ecccccCC-CceECCEEecCceeeeeccccchhh-ccCCCEEEeCCCccccccCCCCC-CCcEEEEEeeccccccHHHHH
Confidence 99998887 58899999999999885 54 45 5789999876543 36777766 799999999999999999999
Q ss_pred HHHHHHHhcCCceEEEEccCCcEEEEe-----cchhHHHHHHHHHHhhhccceEEEeCCeeeEEecCCC
Q 047363 555 KGLRLLNRADPFVEVSVSSRGENVLAA-----AGEVHLERCIKDLKERFAKVSLEVSPPLVSYKETIEG 618 (876)
Q Consensus 555 ~gL~~L~~~DP~l~v~~~etGE~vl~g-----~GElHLe~~l~dL~~~fa~vei~vs~P~V~yrETI~~ 618 (876)
++|++|..+||++.+. .||+|+++.| +||||||+++++|+++| |+++.+++|.|+|||||.+
T Consensus 314 ~aL~kL~~eD~sl~~~-~et~~~l~~g~~~~~~G~lHlei~~erl~re~-~~~v~~~~P~V~yreti~~ 380 (600)
T 2ywe_A 314 DALEKYAINDAAIVYE-PESSPALGMGFRVGFLGLLHMEIVQERLEREY-GVKIITTAPNVIYRVKKKF 380 (600)
T ss_dssp HHHHHHHTTCSSCEEE-EEEETTTEEEEEEEESSHHHHHHHHHHHHHHS-CCCEEECCCEECEEEEETT
T ss_pred HHHHHHhhhCCEEEEE-ECCccccccceEEEeccHHHHHHHHHHHHhhc-CceEEEEeeeEEEEEEecC
Confidence 9999999999999887 5789988888 99999999999999999 9999999999999999973
No 12
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=100.00 E-value=4.5e-50 Score=474.24 Aligned_cols=361 Identities=29% Similarity=0.406 Sum_probs=273.3
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEc-----CeEEEEEcC
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYK-----DYAINLIDS 81 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~-----~~~inlIDT 81 (876)
+++|||+|+||+|||||||+++|++. +|.+..... ..+++|+.+.|++||+|+++..+.+.|. ++.+|||||
T Consensus 2 ~~irnI~IiGh~d~GKTTLi~rLl~~--tg~i~~~~~-~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDT 78 (599)
T 3cb4_D 2 KNIRNFSIIAHIDHGKSTLSDRIIQI--CGGLSDREM-EAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDT 78 (599)
T ss_dssp TTEEEEEEECCC----CCHHHHHHHH--TTC---------------------------CEEEEEEECTTSCEEEEEEEEC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh--cCCcccccc-cccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEEC
Confidence 57999999999999999999999998 777654322 3468899999999999999999999887 389999999
Q ss_pred CCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccccccccChHHHHHHHHHHHHHh
Q 047363 82 PGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLISELKLTPLEAYNRLLRIVHEV 161 (876)
Q Consensus 82 PGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~~e~~~~~~~~~~~l~~~l~~v 161 (876)
|||.||..++.++++.+|+||+|||+.+|++.|+...|..+...++|+++|+||+|+..++ +++....+
T Consensus 79 PGh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~a~----~~~v~~ei------- 147 (599)
T 3cb4_D 79 PGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAAD----PERVAEEI------- 147 (599)
T ss_dssp CCCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTSTTCC----HHHHHHHH-------
T ss_pred CCchHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCccccc----HHHHHHHH-------
Confidence 9999999999999999999999999999999999999999999999999999999998754 22222221
Q ss_pred hhhhhhccccccccccccccccCcccccccccccccccccccccCCCCcEEEEeccCCCccchHHHHHHHHHhcCCCHHH
Q 047363 162 NGIMSAYKSEKYLSDVDSLLSVPSEKLGDENLQFIEDDEEDTFQPQKGNVAFVCGLDGWGFSISEFAEFYATKLGASTAA 241 (876)
Q Consensus 162 n~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~~gnV~f~Sa~~Gw~ftl~~fa~~y~~k~~~~~~~ 241 (876)
...+. +.+ ..++++||+.|.+
T Consensus 148 ~~~lg-------------------------------------~~~--~~vi~vSAktg~G-------------------- 168 (599)
T 3cb4_D 148 EDIVG-------------------------------------IDA--TDAVRCSAKTGVG-------------------- 168 (599)
T ss_dssp HHHTC-------------------------------------CCC--TTCEEECTTTCTT--------------------
T ss_pred HHHhC-------------------------------------CCc--ceEEEeecccCCC--------------------
Confidence 11100 000 0245566555421
Q ss_pred HHHhhcccceecCCCcccccccCCCCCCCCCCchhhhhchhHHHHHHHHcCCCCcHHHHHHHHHHcCCCCCHHHHhccCh
Q 047363 242 LEKALWGPRYFNPKTKMIVGKKGISTGTKARPMFVQFVLEPLWQVYQAALEPDGDKGVLEKVIKSFNLSIPRRELQNKDP 321 (876)
Q Consensus 242 l~k~LWGd~y~~~ktkk~~~~~~~~~~~~~~p~Fv~fiL~pi~~l~~~v~~~d~~~~~l~k~l~~~g~~l~~~~l~~~~~ 321 (876)
T Consensus 169 -------------------------------------------------------------------------------- 168 (599)
T 3cb4_D 169 -------------------------------------------------------------------------------- 168 (599)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhhhcccccHHHHHHHHhhcCCCcccccchhhhcccccccccCCcccccccchhhhhhhhhcccCCCCCCCeEEE
Q 047363 322 KAVLQAVLSHWLPLSDAILSMVVKCIPDPISAQSYRISRLLPKREILDNDVDCNVLTEADFVRKSVEVCNSSPEAPCVAF 401 (876)
Q Consensus 322 k~ll~~v~~~~lp~~~~lLd~i~~~lPsP~~a~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~cd~~~~~plv~~ 401 (876)
.+.|++.+++++|+|.. + +++|+.++
T Consensus 169 --------------I~~Ll~~I~~~lp~p~~--------------------------------------~--~~~p~~al 194 (599)
T 3cb4_D 169 --------------VQDVLERLVRDIPPPEG--------------------------------------D--PEGPLQAL 194 (599)
T ss_dssp --------------HHHHHHHHHHHSCCCCC--------------------------------------C--TTSCCEEE
T ss_pred --------------chhHHHHHhhcCCCccc--------------------------------------c--ccCCceee
Confidence 11357778888888841 1 56899999
Q ss_pred EEEeeeecccccCCCCCCccccccccCCCCCCCCccceEEEEEEEeCccCCCCEEEEeccccCCcchhhhccccceeEEe
Q 047363 402 VSKMFAVPIKMLPQRGSNGEILDNYADKGGNGESEECFLAFARIFSGVLYSGQRVFVLSALYDPLKVESMQKHIQEAELQ 481 (876)
Q Consensus 402 V~K~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iaf~RV~SGtL~~G~~v~vlg~~y~~~~~~~~~~~~~~~~I~ 481 (876)
|++.+.+++. ..++++||+||+|++||+|++.... +..+|.
T Consensus 195 I~d~~~d~~~--------------------------G~v~~~rV~sG~l~~Gd~v~~~~~~-------------~~~~v~ 235 (599)
T 3cb4_D 195 IIDSWFDNYL--------------------------GVVSLIRIKNGTLRKGDKVKVMSTG-------------QTYNAD 235 (599)
T ss_dssp EEEEEEETTT--------------------------EEEEEEEEEESCEESSCEEEETTTC-------------CEEECC
T ss_pred eeeccccccc--------------------------cEEEEEEEEeCEEecCCEEEecccc-------------ceeEEe
Confidence 9999988752 1599999999999999999886411 347899
Q ss_pred EEEEecCCceeecceeeCCCeEEEe-cC---CceeeccceecCCCCc--ccCCCccccCCceeEEEEeeCCCccHHHHHH
Q 047363 482 SLYLMMGQGLKPVASAKAGNVVAIR-GL---GQQILKSATLSSTRNC--WPFSSMVFQVSPTLRVAIEPSDPADMGALMK 555 (876)
Q Consensus 482 ~L~l~~G~~~~~v~~v~AGnIv~I~-GL---~~~i~k~~Tl~s~~~~--~~~~~~~~~~~Pvv~vaIEP~~~~d~~kL~~ 555 (876)
+++++.+. .++++++.||||+++. |+ ++ +..|+||++.... .+++++.+ +.|++.++++|.+..|.++|.+
T Consensus 236 ~i~~~~~~-~~~~~~~~aGdi~~~~~gi~~~~~-~~~GDtl~~~~~~~~~~l~~~~~-~~P~v~~~i~p~~~~d~~~l~~ 312 (599)
T 3cb4_D 236 RLGIFTPK-QVDRTELKCGEVGWLVCAIKDIHG-APVGDTLTLARNPAEKALPGFKK-VKPQVYAGLFPVSSDDYEAFRD 312 (599)
T ss_dssp EEEEESSS-EEECSEECTTCEEEEECCCSSGGG-SCTTCEEEESSSCCSSCCTTCCC-CCCCEEEEEEESSGGGHHHHHH
T ss_pred eeeeccCC-ceECCEEcCCCeeEeecccccccc-CccCCEeeecCCccccccccccC-CCcceEEEEEecCccCHHHHHH
Confidence 99998876 8899999999999884 54 35 5789999876543 45666665 6899999999999999999999
Q ss_pred HHHHHHhcCCceEEEEccCCcEEEEe-----cchhHHHHHHHHHHhhhccceEEEeCCeeeEEecCCC
Q 047363 556 GLRLLNRADPFVEVSVSSRGENVLAA-----AGEVHLERCIKDLKERFAKVSLEVSPPLVSYKETIEG 618 (876)
Q Consensus 556 gL~~L~~~DP~l~v~~~etGE~vl~g-----~GElHLe~~l~dL~~~fa~vei~vs~P~V~yrETI~~ 618 (876)
+|.+|..+||++.+. +||+|+++.| +||||||+++++|+++| |+++.+++|.|+|||||..
T Consensus 313 aL~kL~~eD~sl~~~-~et~~~l~~gfr~g~lG~lhlei~~erl~~e~-~~~~~~~~P~V~yreti~~ 378 (599)
T 3cb4_D 313 ALGKLSLNDASLFYE-PESSSALGFGFRCGFLGLLHMEIIQERLEREY-DLDLITTAPTVVYEVETTS 378 (599)
T ss_dssp HHHHHHTTCSSCEEE-EEEETTTEEEEEEEESSHHHHHHHHHHHHHTS-CCCEEECCCEECEEEEESS
T ss_pred HHHHHHhhCcEEEEE-eccccccccceEEEeccHHHHHHHHHHHHHHc-CceEEEEeeeEEEEEEecC
Confidence 999999999999887 6899988888 99999999999999999 9999999999999999965
No 13
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.95 E-value=1.3e-26 Score=263.53 Aligned_cols=132 Identities=27% Similarity=0.354 Sum_probs=112.3
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhC-CCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCc
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATG-GGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHM 85 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~-~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~ 85 (876)
...+||+++||+|||||||+++|++... .|... .......+|..+.|+++|+|+....+.+.+.++.++|||||||.
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~--~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~ 86 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNV--EVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHA 86 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTS--CCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSG
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccc--cccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChH
Confidence 4568999999999999999999987410 11100 00112247888999999999999888888888999999999999
Q ss_pred cchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCC-cEEEEecccccc
Q 047363 86 DFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLT-PCLVLNKIDRLI 140 (876)
Q Consensus 86 dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip-~ilviNKiD~~~ 140 (876)
+|...+..+++.+|++|+|+|+.+|...|+...|..+...++| +++|+||+|+..
T Consensus 87 ~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~ 142 (405)
T 2c78_A 87 DYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVD 142 (405)
T ss_dssp GGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCC
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccC
Confidence 9999999999999999999999999999999999999889999 678999999974
No 14
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.95 E-value=4.8e-26 Score=261.39 Aligned_cols=134 Identities=20% Similarity=0.328 Sum_probs=117.8
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCCCccccc----------CCc-----eeeccChhhhhhcceeeeeeEEEEEE
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKL----------AGK-----LRFMDYLDEEQRRAITMKSSSIALHY 71 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~----------~g~-----~~~~d~~~~E~~rgiti~~~~i~~~~ 71 (876)
...+||+++||+|+|||||+++|++. .|.+.... .|+ ..++|....|++||+|+......+.+
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~--~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~ 92 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYL--TGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET 92 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHH--cCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec
Confidence 45789999999999999999999998 66665332 111 24689999999999999999999999
Q ss_pred cCeEEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCccc-------cchHHHHHHhhhhcCC-cEEEEecccccccc
Q 047363 72 KDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVH-------IQTHAVLRQSWIEKLT-PCLVLNKIDRLISE 142 (876)
Q Consensus 72 ~~~~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv~-------~~t~~~l~~~~~~~ip-~ilviNKiD~~~~e 142 (876)
.++.++|||||||.+|...+..+++.+|++|+|||+.+|.. .|+...+..+...++| +|+|+||+|+...+
T Consensus 93 ~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~ 171 (439)
T 3j2k_7 93 EKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVN 171 (439)
T ss_pred CCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcccc
Confidence 99999999999999999999999999999999999999986 6999999999999999 78999999997543
No 15
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.94 E-value=1.2e-26 Score=263.08 Aligned_cols=129 Identities=28% Similarity=0.361 Sum_probs=109.6
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhhC-CCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccc
Q 047363 9 IRNISILAHVDHGKTTLADHLIAATG-GGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDF 87 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~t~-~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF 87 (876)
..||+++||+|||||||+++|++... .|.. .......+|....|+++|+|+......+.+.++.++|||||||.+|
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~---~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f 79 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGA---KFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADY 79 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSB---CCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHH
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCcc---ccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHH
Confidence 46899999999999999999988511 1100 0011224677888999999999988888888899999999999999
Q ss_pred hHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCc-EEEEecccccc
Q 047363 88 CSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTP-CLVLNKIDRLI 140 (876)
Q Consensus 88 ~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~-ilviNKiD~~~ 140 (876)
...+..+++.+|++|+|||+.+|...|+.+.|..+...++|. ++|+||+|+..
T Consensus 80 ~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~ 133 (397)
T 1d2e_A 80 VKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQ 133 (397)
T ss_dssp HHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCS
T ss_pred HHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCC
Confidence 999999999999999999999999999999998888899995 78999999974
No 16
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.94 E-value=9.4e-27 Score=275.48 Aligned_cols=323 Identities=20% Similarity=0.256 Sum_probs=211.0
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEE----------------
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHY---------------- 71 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~---------------- 71 (876)
+.++|+|+||+|||||||+++|++.+. .... .+|+|.......+.+
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v----~~~e--------------~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v 65 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAV----ASRE--------------AGGITQHIGATEIPMDVIEGICGDFLKKFSI 65 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHH----SCC------------------CCCBTTEEEEEHHHHHHHSCGGGGGCGG
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccC----cccc--------------CCceecccCeEEEeechhhhhcccccccccc
Confidence 567999999999999999999987621 1000 123332222222221
Q ss_pred --cCeEEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccccc-------
Q 047363 72 --KDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLISE------- 142 (876)
Q Consensus 72 --~~~~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~~e------- 142 (876)
....++|||||||.+|..++.++++.+|++|+|+|+.+|++.||...|+.+...++|+++|+||+|+....
T Consensus 66 ~~~~~~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~~~~~~~~~~ 145 (594)
T 1g7s_A 66 RETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEGRP 145 (594)
T ss_dssp GGTCCEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCCTTCC
T ss_pred ccccCCEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEecccccccccccccCCc
Confidence 12369999999999999999999999999999999999999999999999999999999999999997421
Q ss_pred ----cccChHHHHHHHHHHHHHhhhhhhhccccccccccccccccCcccccccccccccccccccccCCCCcEEEEeccC
Q 047363 143 ----LKLTPLEAYNRLLRIVHEVNGIMSAYKSEKYLSDVDSLLSVPSEKLGDENLQFIEDDEEDTFQPQKGNVAFVCGLD 218 (876)
Q Consensus 143 ----~~~~~~~~~~~l~~~l~~vn~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~~gnV~f~Sa~~ 218 (876)
+....+.+...+...+.++...+.. .++.. +.+.. ... + ...-.|+++||+.
T Consensus 146 ~~e~sa~~~~~v~~~~~e~i~ei~~~L~e----~gl~~-------------e~~~~----l~~--~-~~~vpvv~vSA~t 201 (594)
T 1g7s_A 146 FMETFSKQDIQVQQKLDTKVYELVGKLHE----EGFES-------------ERFDR----VTD--F-ASQVSIIPISAIT 201 (594)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHHHHHHHHH----TTCEE-------------EEGGG----CSC--T-TTEEEEEECCTTT
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHH----cCcch-------------HHHHH----HHh--c-cCcceEEEEeccC
Confidence 0111233334443333332221110 00000 00000 000 0 0001344555544
Q ss_pred CCccchHHHHHHHHHhcCCCHHHHHHhhcccceecCCCcccccccCCCCCCCCCCchhhhhchhHHHHHHHHcCCCCcHH
Q 047363 219 GWGFSISEFAEFYATKLGASTAALEKALWGPRYFNPKTKMIVGKKGISTGTKARPMFVQFVLEPLWQVYQAALEPDGDKG 298 (876)
Q Consensus 219 Gw~ftl~~fa~~y~~k~~~~~~~l~k~LWGd~y~~~ktkk~~~~~~~~~~~~~~p~Fv~fiL~pi~~l~~~v~~~d~~~~ 298 (876)
|++
T Consensus 202 G~G----------------------------------------------------------------------------- 204 (594)
T 1g7s_A 202 GEG----------------------------------------------------------------------------- 204 (594)
T ss_dssp CTT-----------------------------------------------------------------------------
T ss_pred CCC-----------------------------------------------------------------------------
Confidence 432
Q ss_pred HHHHHHHHcCCCCCHHHHhccChHHHHHHhhhcccccHHHHHHHHhhcCCCcccccchhhhcccccccccCCcccccccc
Q 047363 299 VLEKVIKSFNLSIPRRELQNKDPKAVLQAVLSHWLPLSDAILSMVVKCIPDPISAQSYRISRLLPKREILDNDVDCNVLT 378 (876)
Q Consensus 299 ~l~k~l~~~g~~l~~~~l~~~~~k~ll~~v~~~~lp~~~~lLd~i~~~lPsP~~a~~~r~~~l~~~~~~~~~~~~~~~~~ 378 (876)
.+.||++++.++|+|... +
T Consensus 205 -------------------------------------I~eLl~~I~~~~~~~~~~---~--------------------- 223 (594)
T 1g7s_A 205 -------------------------------------IPELLTMLMGLAQQYLRE---Q--------------------- 223 (594)
T ss_dssp -------------------------------------HHHHHHHHHHHHHHHCSG---G---------------------
T ss_pred -------------------------------------chhHHHHHHhhccccchh---h---------------------
Confidence 012344444444433210 0
Q ss_pred hhhhhhhhhcccCCCCCCCeEEEEEEeeeecccccCCCCCCccccccccCCCCCCCCccceEEEEEEEeCccCCCCEEEE
Q 047363 379 EADFVRKSVEVCNSSPEAPCVAFVSKMFAVPIKMLPQRGSNGEILDNYADKGGNGESEECFLAFARIFSGVLYSGQRVFV 458 (876)
Q Consensus 379 ~~~~~~~~~~~cd~~~~~plv~~V~K~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iaf~RV~SGtL~~G~~v~v 458 (876)
..++ +++|+.++|+|.+.+++. ..++++||+||+|++||.|.+
T Consensus 224 ---------l~~~--~~~p~~~~V~~~~~d~g~--------------------------G~v~~~rV~~G~Lk~Gd~v~~ 266 (594)
T 1g7s_A 224 ---------LKIE--EDSPARGTILEVKEETGL--------------------------GMTIDAVIYDGILRKDDTIAM 266 (594)
T ss_dssp ---------GEEC--TTSBCEEEEEEEEEETTE--------------------------EEEEEEEEEESEEETTCEEEE
T ss_pred ---------hccc--cCCCceeEEEEEEEeCCc--------------------------EEEEEEEEeeCEEeeCCEEEE
Confidence 1123 678999999999988752 148999999999999999987
Q ss_pred eccccCCcchhhhccccceeEEeEEEEec--------CCceeecceee--CCCeEEEecCCceeeccceecCCCCcc---
Q 047363 459 LSALYDPLKVESMQKHIQEAELQSLYLMM--------GQGLKPVASAK--AGNVVAIRGLGQQILKSATLSSTRNCW--- 525 (876)
Q Consensus 459 lg~~y~~~~~~~~~~~~~~~~I~~L~l~~--------G~~~~~v~~v~--AGnIv~I~GL~~~i~k~~Tl~s~~~~~--- 525 (876)
.+. +.+ ...+|.+|+.+. |....++++|. ||+++++.||++. ..|+||+...+..
T Consensus 267 ~~~-~~~----------~~~rV~~i~~~~~~~elr~~~~~~~~v~ea~~~aG~~v~~~~l~~~-~~Gd~l~~~~~~~~~~ 334 (594)
T 1g7s_A 267 MTS-KDV----------ISTRIRSLLKPRPLEEMRESRKKFQKVDEVVAAAGIKIVAPGIDDV-MAGSPLRVVTDPEKVR 334 (594)
T ss_dssp EBS-SSE----------EEEECCEEEEECCCC----CCCSEEECSEEESSEEEEEECSSCTTB-CTTCEEEECSSHHHHH
T ss_pred CCC-CCc----------eeEEEeEEEeccccchhhhccCCceEccEEcCCCCcEEEEcccCCC-CCCCEEEecCCHHHHH
Confidence 542 110 135899999873 67788999999 9999999999984 7899997654320
Q ss_pred -----cCCCccccCCceeEEEEeeCCCccHHHHHHHHHHH
Q 047363 526 -----PFSSMVFQVSPTLRVAIEPSDPADMGALMKGLRLL 560 (876)
Q Consensus 526 -----~~~~~~~~~~Pvv~vaIEP~~~~d~~kL~~gL~~L 560 (876)
.+..+.. ..+.+.+.|.+.....+++|..+|+++
T Consensus 335 ~~~~~~~~~~~~-~~~~~~~~vkad~~gs~eal~~~l~~~ 373 (594)
T 1g7s_A 335 EEILSEIEDIKI-DTDEAGVVVKADTLGSLEAVVKILRDM 373 (594)
T ss_dssp HHHHHHHHTTSC-BCSSSCCEEEESSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccc-ccccccEEEEeCCCCCHHHHHHHHHhC
Confidence 1222222 356788899999999999999999987
No 17
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.94 E-value=2.3e-26 Score=263.83 Aligned_cols=133 Identities=32% Similarity=0.486 Sum_probs=104.0
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCCCccccc----------CC--ce---eeccChhhhhhcceeeeeeEEEEEE
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKL----------AG--KL---RFMDYLDEEQRRAITMKSSSIALHY 71 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~----------~g--~~---~~~d~~~~E~~rgiti~~~~i~~~~ 71 (876)
...+||+++||+|||||||+++|++. .|.+.... .| .. .++|..+.|++||+|+......+.+
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~--~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~ 81 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMD--RGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFET 81 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHH--HBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEEC
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHH--cCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEec
Confidence 46799999999999999999999987 44443211 01 11 3578999999999999999888999
Q ss_pred cCeEEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCc-------cccchHHHHHHhhhhcCC-cEEEEeccccccc
Q 047363 72 KDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEG-------VHIQTHAVLRQSWIEKLT-PCLVLNKIDRLIS 141 (876)
Q Consensus 72 ~~~~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~eg-------v~~~t~~~l~~~~~~~ip-~ilviNKiD~~~~ 141 (876)
.++.++|||||||.+|..++..+++.+|++|+|||+.+| +..|+.+.+..+...++| +|+|+||+|+...
T Consensus 82 ~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~ 159 (435)
T 1jny_A 82 KKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEP 159 (435)
T ss_dssp SSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSS
T ss_pred CCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCc
Confidence 999999999999999999999999999999999999998 778999999888888885 7789999999864
No 18
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.93 E-value=8.8e-26 Score=267.83 Aligned_cols=134 Identities=25% Similarity=0.368 Sum_probs=78.7
Q ss_pred CCCCceEEEEEeCCCCcHHHHHHHHHHhhCCCCccccc----------CCc-----eeeccChhhhhhcceeeeeeEEEE
Q 047363 5 DTRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKL----------AGK-----LRFMDYLDEEQRRAITMKSSSIAL 69 (876)
Q Consensus 5 ~~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~----------~g~-----~~~~d~~~~E~~rgiti~~~~i~~ 69 (876)
....++||+|+||+|||||||+++|++. .+.+.... .|+ ..++|....|+++|+|+......+
T Consensus 173 ~~k~~~~I~iiG~~d~GKSTLi~~Ll~~--~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~ 250 (592)
T 3mca_A 173 NPKPVVHLVVTGHVDSGKSTMLGRIMFE--LGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTF 250 (592)
T ss_dssp CCCCEEEEEEECCSSSTHHHHHHHHHHH--HHCC----------------------------------------------
T ss_pred cCCCccEEEEEcCCCCCHHHHHHHHHHH--cCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEE
Confidence 3456799999999999999999999987 44443221 111 357899999999999999999999
Q ss_pred EEcCeEEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCcc-------ccchHHHHHHhhhhcCC-cEEEEecccccc
Q 047363 70 HYKDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGV-------HIQTHAVLRQSWIEKLT-PCLVLNKIDRLI 140 (876)
Q Consensus 70 ~~~~~~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv-------~~~t~~~l~~~~~~~ip-~ilviNKiD~~~ 140 (876)
.+.++.++|||||||.+|...+..+++.+|++|+|||+.+|. ..|+...+..+...++| +|+|+||+|+..
T Consensus 251 ~~~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl~~ 329 (592)
T 3mca_A 251 ESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMS 329 (592)
T ss_dssp --------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGGGT
T ss_pred EeCCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEecccccc
Confidence 999999999999999999999999999999999999999864 88999999999999998 778999999975
No 19
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.92 E-value=1e-24 Score=267.89 Aligned_cols=131 Identities=28% Similarity=0.348 Sum_probs=97.5
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhC-CCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCc
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATG-GGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHM 85 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~-~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~ 85 (876)
....||+++||+|||||||+++|++... .|.. .....+.+|..+.|+++|+|+....+.+.+.++.++|||||||.
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a---~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHe 370 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGG---AARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHA 370 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC------------------------CCSCEEEECSSCEEEEEECCCHH
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhcccccc---ccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChH
Confidence 4568999999999999999999987510 0100 00112356888899999999999888888888999999999999
Q ss_pred cchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCC-cEEEEecccccc
Q 047363 86 DFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLT-PCLVLNKIDRLI 140 (876)
Q Consensus 86 dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip-~ilviNKiD~~~ 140 (876)
+|...+..+++.+|++|+|||+.+|...|+.+.+..+...++| +|+|+||+|+..
T Consensus 371 dF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~ 426 (1289)
T 3avx_A 371 DYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVD 426 (1289)
T ss_dssp HHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCC
T ss_pred HHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeeccccc
Confidence 9999999999999999999999999999999999988889999 578999999974
No 20
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.92 E-value=2.2e-24 Score=250.71 Aligned_cols=131 Identities=24% Similarity=0.333 Sum_probs=102.4
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhhCCCCccccc----------CC-----ceeeccChhhhhhcceeeeeeEEEEEEc
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAATGGGLLHPKL----------AG-----KLRFMDYLDEEQRRAITMKSSSIALHYK 72 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~----------~g-----~~~~~d~~~~E~~rgiti~~~~i~~~~~ 72 (876)
...||+++||+|+|||||+++|++. .+.+.... .| ...++|....|+++|+|+......+.+.
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~--~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 109 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYD--LNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 109 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHH--TTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh--cCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC
Confidence 3578999999999999999999998 66554321 11 1245789999999999999999999999
Q ss_pred CeEEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCc-------cccchHHHHHHhhhhcCC-cEEEEecccccc
Q 047363 73 DYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEG-------VHIQTHAVLRQSWIEKLT-PCLVLNKIDRLI 140 (876)
Q Consensus 73 ~~~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~eg-------v~~~t~~~l~~~~~~~ip-~ilviNKiD~~~ 140 (876)
++.++|||||||.+|...+..+++.+|++|+|||+.+| +..|+...+..+...++| +|+|+||+|+..
T Consensus 110 ~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~ 185 (483)
T 3p26_A 110 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVD 185 (483)
T ss_dssp SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGT
T ss_pred CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCccc
Confidence 99999999999999999999999999999999999998 557888888888888865 788999999975
No 21
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.92 E-value=5.3e-24 Score=244.24 Aligned_cols=133 Identities=24% Similarity=0.321 Sum_probs=107.6
Q ss_pred CCCceEEEEEeCCCCcHHHHHHHHHHhhCCCCccccc----------CCce-------eeccChhhhhhcceeeeeeEEE
Q 047363 6 TRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKL----------AGKL-------RFMDYLDEEQRRAITMKSSSIA 68 (876)
Q Consensus 6 ~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~----------~g~~-------~~~d~~~~E~~rgiti~~~~i~ 68 (876)
....++|+++||+|||||||+++|++. .+.+.... .|.. .++|..+.|++||+|++.+...
T Consensus 21 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~--~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~ 98 (434)
T 1zun_B 21 RKEMLRFLTCGNVDDGKSTLIGRLLHD--SKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRY 98 (434)
T ss_dssp SCEEEEEEEECCTTSSHHHHHHHHHHH--TTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEE
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHhh--cCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeE
Confidence 345689999999999999999999988 54442211 1111 2478888999999999999888
Q ss_pred EEEcCeEEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCC-cEEEEecccccc
Q 047363 69 LHYKDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLT-PCLVLNKIDRLI 140 (876)
Q Consensus 69 ~~~~~~~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip-~ilviNKiD~~~ 140 (876)
+.+.++.++|||||||.+|...+..+++.+|++|+|||+.+|...|+...+..+...++| +|+|+||+|+..
T Consensus 99 ~~~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~~ 171 (434)
T 1zun_B 99 FSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNG 171 (434)
T ss_dssp EECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTTT
T ss_pred eecCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcCCc
Confidence 888999999999999999999999999999999999999999999999888888888886 788999999975
No 22
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.92 E-value=2.1e-24 Score=249.65 Aligned_cols=134 Identities=24% Similarity=0.376 Sum_probs=86.4
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccc----------cCCc-----eeeccChhhhhhcceeeeeeEEEEEE
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLHPK----------LAGK-----LRFMDYLDEEQRRAITMKSSSIALHY 71 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~----------~~g~-----~~~~d~~~~E~~rgiti~~~~i~~~~ 71 (876)
...+||+++||+|||||||+++|++. .|.+... ..|+ ..++|..+.|++||+|+......+.+
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~--~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~ 118 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFL--TGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET 118 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHH--TTSSCHHHHHHHHHHTCC----------------------------CCEEEC
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHH--hCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEec
Confidence 34689999999999999999999988 6655321 1121 24578889999999999998888888
Q ss_pred cCeEEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCccc-------cchHHHHHHhhhhcCC-cEEEEecccccccc
Q 047363 72 KDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVH-------IQTHAVLRQSWIEKLT-PCLVLNKIDRLISE 142 (876)
Q Consensus 72 ~~~~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv~-------~~t~~~l~~~~~~~ip-~ilviNKiD~~~~e 142 (876)
.++.++|||||||.+|...+..+++.+|++|+|||+.+|+. .|+...+..+...++| +|+|+||+|+...+
T Consensus 119 ~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~ 197 (467)
T 1r5b_A 119 EHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQ 197 (467)
T ss_dssp SSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCS
T ss_pred CCeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCcc
Confidence 89999999999999999999999999999999999999973 7899998888888998 78899999997543
No 23
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.91 E-value=8e-24 Score=237.56 Aligned_cols=104 Identities=15% Similarity=0.190 Sum_probs=96.9
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccc
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDF 87 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF 87 (876)
.++||+++||+|||||||+++|+ +||+|+......+.+.++.++|||||||.+|
T Consensus 20 ~m~~i~iiG~~d~GKSTL~~~L~--------------------------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f 73 (370)
T 2elf_A 20 HMANVAIIGTEKSGRTSLAANLG--------------------------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKT 73 (370)
T ss_dssp CEEEEEEEESTTSSHHHHHHTTS--------------------------EEEEESSSEEEEECSSSSEEEEEECTTTTTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHH--------------------------hCCEEEEeeEEEEecCCeEEEEEECCChHHH
Confidence 35699999999999999999884 4688888888888888999999999999999
Q ss_pred hHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCc-EEEEe-cccc
Q 047363 88 CSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTP-CLVLN-KIDR 138 (876)
Q Consensus 88 ~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~-ilviN-KiD~ 138 (876)
..++..+++.+|++|+||| .+|...|+.+.+..+...++|. ++|+| |+|+
T Consensus 74 ~~~~~~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl 125 (370)
T 2elf_A 74 LKSLITALNISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST 125 (370)
T ss_dssp HHHHHHHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS
T ss_pred HHHHHHHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC
Confidence 9999999999999999999 9999999999999999999999 89999 9999
No 24
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.91 E-value=6.1e-24 Score=252.75 Aligned_cols=131 Identities=24% Similarity=0.350 Sum_probs=112.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccc----------cCCc-----eeeccChhhhhhcceeeeeeEEEEEEc
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAATGGGLLHPK----------LAGK-----LRFMDYLDEEQRRAITMKSSSIALHYK 72 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~----------~~g~-----~~~~d~~~~E~~rgiti~~~~i~~~~~ 72 (876)
...+|+|+||+|+|||||+++|++. .+.+... ..|+ ..++|....|+.+|+|+......+.+.
T Consensus 166 ~~lkV~ivG~~n~GKSTLin~Ll~~--~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~ 243 (611)
T 3izq_1 166 PHLSFVVLGHVDAGKSTLMGRLLYD--LNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 243 (611)
T ss_dssp CCCEEEEECCSSSCHHHHHHHHHSC--SSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS
T ss_pred CceEEEEEECCCCCHHHHHHHHHHh--cCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC
Confidence 4579999999999999999999987 5555431 0111 245788889999999999999999999
Q ss_pred CeEEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCc-------cccchHHHHHHhhhhcCC-cEEEEecccccc
Q 047363 73 DYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEG-------VHIQTHAVLRQSWIEKLT-PCLVLNKIDRLI 140 (876)
Q Consensus 73 ~~~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~eg-------v~~~t~~~l~~~~~~~ip-~ilviNKiD~~~ 140 (876)
++.++|||||||.+|...+..+++.+|++|+|||+.+| ...|+...+..+...++| +|+|+||+|+..
T Consensus 244 ~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~ 319 (611)
T 3izq_1 244 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVD 319 (611)
T ss_dssp SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTT
T ss_pred CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccc
Confidence 99999999999999999999999999999999999987 467888888888888877 788999999975
No 25
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.91 E-value=3.5e-23 Score=235.72 Aligned_cols=121 Identities=32% Similarity=0.407 Sum_probs=100.9
Q ss_pred CCCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEc-------------
Q 047363 6 TRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYK------------- 72 (876)
Q Consensus 6 ~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~------------- 72 (876)
....+||+++||+|||||||+++|++. ..|....|.+||+|+......+.+.
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~---------------~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~ 71 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGV---------------WTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPV 71 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTC---------------CCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSB
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCC---------------ccccChhhhcCCcEEEEeeeeeeccccccccccccccc
Confidence 345789999999999999999999643 2355677889999998776655541
Q ss_pred ----------CeEEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCcc-ccchHHHHHHhhhhcC-CcEEEEecccccc
Q 047363 73 ----------DYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGV-HIQTHAVLRQSWIEKL-TPCLVLNKIDRLI 140 (876)
Q Consensus 73 ----------~~~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv-~~~t~~~l~~~~~~~i-p~ilviNKiD~~~ 140 (876)
.+.++|||||||.+|..++.+++..+|++|+|||+.+|+ ..|+.+.+..+...++ |+++|+||+|+..
T Consensus 72 ~~~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~ 151 (410)
T 1kk1_A 72 CPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVD 151 (410)
T ss_dssp CTTTCCBCEEEEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSC
T ss_pred ccccCcccccccEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCC
Confidence 178999999999999999999999999999999999998 8899988888777776 5678899999975
Q ss_pred c
Q 047363 141 S 141 (876)
Q Consensus 141 ~ 141 (876)
.
T Consensus 152 ~ 152 (410)
T 1kk1_A 152 K 152 (410)
T ss_dssp H
T ss_pred H
Confidence 4
No 26
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.91 E-value=1.5e-23 Score=242.00 Aligned_cols=132 Identities=27% Similarity=0.418 Sum_probs=111.8
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccc------------cCCce---eeccChhhhhhcceeeeeeEEEEEE
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLHPK------------LAGKL---RFMDYLDEEQRRAITMKSSSIALHY 71 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~------------~~g~~---~~~d~~~~E~~rgiti~~~~i~~~~ 71 (876)
....+|+++||+|||||||+++|++. .+.+... ..+.. .++|....|+++|+|+......+.+
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~--~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~ 82 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYK--CGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFET 82 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHH--HSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEEC
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHH--cCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEec
Confidence 34689999999999999999999987 4433321 11111 2468888999999999999999999
Q ss_pred cCeEEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCcccc-------chHHHHHHhhhhcCC-cEEEEecccccc
Q 047363 72 KDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHI-------QTHAVLRQSWIEKLT-PCLVLNKIDRLI 140 (876)
Q Consensus 72 ~~~~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv~~-------~t~~~l~~~~~~~ip-~ilviNKiD~~~ 140 (876)
.++.++|||||||.+|...+..+++.+|++|+|||+.+|... |+...+..+...++| +|+|+||+|+..
T Consensus 83 ~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl~~ 159 (458)
T 1f60_A 83 PKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVK 159 (458)
T ss_dssp SSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGGT
T ss_pred CCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEcccccc
Confidence 999999999999999999999999999999999999998765 888888888888887 788999999973
No 27
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.88 E-value=4.1e-23 Score=239.04 Aligned_cols=118 Identities=25% Similarity=0.403 Sum_probs=101.9
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCcc
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMD 86 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~d 86 (876)
.+.++|+++||+|||||||+++|... . +. ....+|+|+......+.++++.++|||||||.+
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~--~--v~--------------~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~ 63 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRST--K--VA--------------SGEAGGITQHIGAYHVETENGMITFLDTPGHAA 63 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHH--H--HS--------------BTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcC--C--Cc--------------cccCCCeeEeEEEEEEEECCEEEEEEECCCcHH
Confidence 46789999999999999999999875 1 10 011367777776667777788999999999999
Q ss_pred chHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccccc
Q 047363 87 FCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLISE 142 (876)
Q Consensus 87 F~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~~e 142 (876)
|...+.++++.+|++|+|||+.+|+..||...|..+...++|+++++||+|+..++
T Consensus 64 f~~~~~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~~~~ 119 (501)
T 1zo1_I 64 FTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEAD 119 (501)
T ss_dssp CTTSBCSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSSTTC
T ss_pred HHHHHHHHHhhCCEEEEEeecccCccHHHHHHHHHHHhcCceEEEEEEeccccccC
Confidence 99999999999999999999999999999999999999999999999999997643
No 28
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.88 E-value=1.3e-21 Score=222.49 Aligned_cols=121 Identities=31% Similarity=0.427 Sum_probs=94.9
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEc--------------
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYK-------------- 72 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~-------------- 72 (876)
....||+++||+|||||||+++|++. ..+....|.++|+|+......+.+.
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g~---------------~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~ 70 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTGV---------------WTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRC 70 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHSC---------------CCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBC
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhCC---------------ccccCcccccCCcEEEecccccccccccccccccccccc
Confidence 45789999999999999999999643 2355667888999997765544331
Q ss_pred ---------CeEEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCcc-ccchHHHHHHhhhhcC-CcEEEEeccccccc
Q 047363 73 ---------DYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGV-HIQTHAVLRQSWIEKL-TPCLVLNKIDRLIS 141 (876)
Q Consensus 73 ---------~~~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv-~~~t~~~l~~~~~~~i-p~ilviNKiD~~~~ 141 (876)
.+.++|||||||.+|...+.+++..+|++|+|+|+.+|+ ..|+.+.+..+...++ |+++|+||+|+...
T Consensus 71 ~~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~ 150 (408)
T 1s0u_A 71 PNCLAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDE 150 (408)
T ss_dssp TTSCCBCEEEEEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCT
T ss_pred cccCcccccccEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCH
Confidence 178999999999999999999999999999999999998 8899888877776776 67899999999764
Q ss_pred c
Q 047363 142 E 142 (876)
Q Consensus 142 e 142 (876)
+
T Consensus 151 ~ 151 (408)
T 1s0u_A 151 K 151 (408)
T ss_dssp T
T ss_pred H
Confidence 3
No 29
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.87 E-value=7.9e-21 Score=215.80 Aligned_cols=131 Identities=27% Similarity=0.257 Sum_probs=93.4
Q ss_pred CCCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCc--eeeccChhhhhhcceeeeeeEEEEE-----EcCeEEEE
Q 047363 6 TRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGK--LRFMDYLDEEQRRAITMKSSSIALH-----YKDYAINL 78 (876)
Q Consensus 6 ~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~--~~~~d~~~~E~~rgiti~~~~i~~~-----~~~~~inl 78 (876)
.....+|+++||+|||||||+++|++. .... ..+. .+.......+..++++.......+. ...+.++|
T Consensus 5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 79 (403)
T 3sjy_A 5 VQPEVNIGVVGHVDHGKTTLVQAITGI--WTSK---KLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISF 79 (403)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHSC--CCCS---SSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEE
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCc--cccc---ccCccccceeeccccccccceecccccccccccccccccceEEE
Confidence 345689999999999999999999864 1100 0011 1111112222334444322111111 11278999
Q ss_pred EcCCCCccchHHHHHHHHhcCeEEEEEcCCCcc-ccchHHHHHHhhhhcC-CcEEEEeccccccc
Q 047363 79 IDSPGHMDFCSEVSTAARLSDGALVLVDAVEGV-HIQTHAVLRQSWIEKL-TPCLVLNKIDRLIS 141 (876)
Q Consensus 79 IDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv-~~~t~~~l~~~~~~~i-p~ilviNKiD~~~~ 141 (876)
||||||.+|...+..+++.+|++|+|+|+.++. ..|+...+..+...++ |+++|+||+|+...
T Consensus 80 iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~ 144 (403)
T 3sjy_A 80 IDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSK 144 (403)
T ss_dssp EECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCH
T ss_pred EECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccch
Confidence 999999999999999999999999999999998 8899888888887776 78889999999753
No 30
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.87 E-value=7.6e-23 Score=238.63 Aligned_cols=117 Identities=26% Similarity=0.394 Sum_probs=96.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEE-cCeEEEEEcCCCCcc
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHY-KDYAINLIDSPGHMD 86 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~-~~~~inlIDTPGh~d 86 (876)
+...|+++||+|||||||+++|... .-. ....+|+|.......+.+ .+..++|||||||.+
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~--~~~----------------~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~ 64 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKT--QVA----------------AMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAA 64 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHH--HHH----------------HSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC--Ccc----------------cccCCceeEEEeEEEEEeCCCCEEEEEECCChHH
Confidence 4577999999999999999999876 100 011234554444444444 356899999999999
Q ss_pred chHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccccc
Q 047363 87 FCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLISE 142 (876)
Q Consensus 87 F~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~~e 142 (876)
|...+.++++.+|++|+|+|+.+|+.+|+...|..+...++|+++|+||+|+...+
T Consensus 65 f~~~~~~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~~~ 120 (537)
T 3izy_P 65 FSAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEAD 120 (537)
T ss_dssp TTTSBBSSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGTTTS
T ss_pred HHHHHHHHHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEecccccccc
Confidence 99999999999999999999999999999999999999999999999999997644
No 31
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.86 E-value=5.6e-22 Score=230.07 Aligned_cols=121 Identities=36% Similarity=0.444 Sum_probs=94.4
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccch
Q 047363 9 IRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFC 88 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~ 88 (876)
..||+++||+|||||||+++|++. . ....+|....|+++|+|+......+.+.++.++|||||||.+|.
T Consensus 19 ~~~I~iiG~~d~GKSTLi~~L~~~--~---------~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~ 87 (482)
T 1wb1_A 19 NINLGIFGHIDHGKTTLSKVLTEI--A---------STSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLI 87 (482)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTT--C-----------------------------CCCEEEETTEEEEECCCSSHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHCC--C---------cccccccccccccCccEEecceEEEEECCEEEEEEECCChHHHH
Confidence 468999999999999999999755 2 12356778889999999998888888899999999999999999
Q ss_pred HHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccc
Q 047363 89 SEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 89 ~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~ 140 (876)
..+..+++.+|++|+|||+.+|+..|+.+.+..+...++|.++|+||+|+..
T Consensus 88 ~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~ 139 (482)
T 1wb1_A 88 RAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAG 139 (482)
T ss_dssp HHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSC
T ss_pred HHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCccc
Confidence 9999999999999999999999999999999989889999999999999975
No 32
>3e3x_A BIPA; MCSG,PSI2, structural genomics, protein struct initiative, midwest center for structural genomics, GTP-BIN nucleotide-binding; HET: MLZ MLY; 1.95A {Vibrio parahaemolyticus}
Probab=99.69 E-value=3.5e-17 Score=177.89 Aligned_cols=108 Identities=19% Similarity=0.277 Sum_probs=77.3
Q ss_pred EEecCCceeeccceecCCCCcccCCCccccCCceeEEEEeeCCC----cc-----HHHHHHHHHHHHhcCCceEEEEc-c
Q 047363 504 AIRGLGQQILKSATLSSTRNCWPFSSMVFQVSPTLRVAIEPSDP----AD-----MGALMKGLRLLNRADPFVEVSVS-S 573 (876)
Q Consensus 504 ~I~GL~~~i~k~~Tl~s~~~~~~~~~~~~~~~Pvv~vaIEP~~~----~d-----~~kL~~gL~~L~~~DP~l~v~~~-e 573 (876)
+|.||++ +..|+|||+.....+++++.+ ++|+++++|+|.+. +| ..+|.++|.+|..+||++.|..+ +
T Consensus 2 av~Gl~~-~~iGDTl~~~~~p~~L~~~~~-~ePvvs~~i~p~~~p~ag~d~~~vt~~kL~~aL~kl~~eDpsL~v~~~~~ 79 (332)
T 3e3x_A 2 NATGLGE-LKISDTICAQNAVEALPALSV-DEPTVTMTFQVNTSPFAGXEGXFVTSRNILERLEKELVHNVALRVEQTDD 79 (332)
T ss_dssp ----------------------------C-CCCCEEEEEECCCSTTTTSSCSBCSHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred CccCCCC-CccCCEEcCCCCcccCCCCCC-CCCEEEEEEEECCCCccccccccchHHHHHHHHHHHhccCCEEEEEEcCC
Confidence 5778887 568999998776677888877 79999999999987 65 78999999999999999999996 7
Q ss_pred CCcEEEEecchhHHHHHHHHHHhhhccceEEEeCCeeeEEec
Q 047363 574 RGENVLAAAGEVHLERCIKDLKERFAKVSLEVSPPLVSYKET 615 (876)
Q Consensus 574 tGE~vl~g~GElHLe~~l~dL~~~fa~vei~vs~P~V~yrET 615 (876)
++|++|+|+||||||+++++|+++ |+++.+++|.|+||||
T Consensus 80 t~~~~v~G~GELHLeIl~ErLrrE--g~ev~v~~P~V~YrEt 119 (332)
T 3e3x_A 80 PDKFRVSGRGELHLSILIENMRRE--GFELAVSRPEVIIXEE 119 (332)
T ss_dssp TTEEEEEESSHHHHHHHHHHHHHH--TBCEEECCCEECCEEE
T ss_pred CCeEEEEeeCHHHHHHHHHHHHhc--CceEEEeCCEEEEEEE
Confidence 999999999999999999999998 9999999999999998
No 33
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.56 E-value=8.7e-15 Score=159.69 Aligned_cols=118 Identities=22% Similarity=0.128 Sum_probs=91.1
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCcc
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMD 86 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~d 86 (876)
.+.++|+|+|++|+|||||+++|++. ...+.....+ .|.......+.+.+..++||||||+.+
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~--~~~ivs~~~~---------------tTr~~i~~i~~~~~~~l~l~DTpG~~~ 67 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGV--KVAPISPRPQ---------------TTRKRLRGILTEGRRQIVFVDTPGLHK 67 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTS--CCSCCCSSSC---------------CCCSCEEEEEEETTEEEEEEECCCCCC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCC--ceeeecCCCC---------------ceeEEEEEEEEeCCcEEEEecCccccc
Confidence 45688999999999999999999876 3222111111 111111123456789999999999988
Q ss_pred --------chHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhh--cCCcEEEEeccccccc
Q 047363 87 --------FCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIE--KLTPCLVLNKIDRLIS 141 (876)
Q Consensus 87 --------F~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~--~ip~ilviNKiD~~~~ 141 (876)
|...+..+++.+|++|+|+|+.++.......+++++... ++|+++|+||+|+...
T Consensus 68 ~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~ 132 (301)
T 1wf3_A 68 PMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKY 132 (301)
T ss_dssp CCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSS
T ss_pred hhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCc
Confidence 677888999999999999999998877777777877776 8999999999999753
No 34
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.55 E-value=1.5e-14 Score=165.69 Aligned_cols=118 Identities=15% Similarity=0.227 Sum_probs=89.9
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCcc
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMD 86 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~d 86 (876)
+...+|+++|++|+|||||+++|++. ...+. +...|+|.......+.+.+..++||||||+.+
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~--~~~~~---------------~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~ 235 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGE--ERVIV---------------SNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRK 235 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTS--TTEEE---------------C---------CCEEEEETTEEEEETTHHHHTC
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCC--Cceee---------------cCCCCceeeeeEEEEEECCeEEEEEECCCcCc
Confidence 35689999999999999999999866 32111 11235666666667778889999999999854
Q ss_pred c----------hHH-HHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEeccccccc
Q 047363 87 F----------CSE-VSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLIS 141 (876)
Q Consensus 87 F----------~~e-~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~~ 141 (876)
+ ... ...+++.+|++|+|+|+.++.+.+...++..+...++|+++|+||+|+...
T Consensus 236 ~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~ 301 (436)
T 2hjg_A 236 KGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDK 301 (436)
T ss_dssp BTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCC
T ss_pred CccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHHcCCcEEEEEECccCCCc
Confidence 3 222 346889999999999999999999988888888889999999999999753
No 35
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.54 E-value=2.8e-14 Score=138.56 Aligned_cols=115 Identities=17% Similarity=0.147 Sum_probs=86.9
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCcc--
Q 047363 9 IRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMD-- 86 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~d-- 86 (876)
+++|+++|+.|+|||||+++|+.. ..... +...+.+.......+.+.+..+.+|||||+.+
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~--~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 63 (161)
T 2dyk_A 1 MHKVVIVGRPNVGKSSLFNRLLKK--RSAVV---------------ADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGD 63 (161)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHC--CC--------------------------CCEEEEEEETTEEEEEEECGGGCSSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC--Ceeec---------------cCCCCceecceEEEEEeCCceEEEEECCCCCCcc
Confidence 589999999999999999999876 21100 11123344444456667788999999999988
Q ss_pred -----chHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccc
Q 047363 87 -----FCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 87 -----F~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~ 140 (876)
+......+++.+|++|+|+|+.++.......+.+.+...++|+++|+||+|+..
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 122 (161)
T 2dyk_A 64 KWEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPK 122 (161)
T ss_dssp SCCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSGG
T ss_pred chHHHHHHHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECccccc
Confidence 455667788999999999999988776666677777778999999999999975
No 36
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.52 E-value=5.2e-14 Score=162.19 Aligned_cols=118 Identities=15% Similarity=0.253 Sum_probs=91.8
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCC---
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPG--- 83 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPG--- 83 (876)
....+|+++|++|+|||||+++|++. ...+.. ...|+|.......+.+.+..++||||||
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~--~~~~~~---------------~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~ 255 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGE--ERVIVS---------------NVAGTTRDAVDTSFTYNQQEFVIVDTAGMRK 255 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTS--TTEEEC---------------C------CTTSEEEEETTEEEEETTGGGTTT
T ss_pred cccceeEEecCCCCCHHHHHHHHhCC--CccccC---------------CCCCeEEEEEEEEEEECCceEEEEECCCCCc
Confidence 45789999999999999999999865 322111 1124555555556777889999999999
Q ss_pred -------CccchHH-HHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEeccccccc
Q 047363 84 -------HMDFCSE-VSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLIS 141 (876)
Q Consensus 84 -------h~dF~~e-~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~~ 141 (876)
+..|... ...+++.+|++|+|+|+.++...+...++..+.+.++|+|+|+||+|+...
T Consensus 256 ~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~ 321 (456)
T 4dcu_A 256 KGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDK 321 (456)
T ss_dssp BTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCC
T ss_pred CcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEEChhcCCC
Confidence 4556544 446889999999999999999999999999998999999999999999753
No 37
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.51 E-value=5e-14 Score=154.10 Aligned_cols=118 Identities=19% Similarity=0.230 Sum_probs=92.9
Q ss_pred CCCCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEc-CeEEEEEcCCC
Q 047363 5 DTRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYK-DYAINLIDSPG 83 (876)
Q Consensus 5 ~~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~-~~~inlIDTPG 83 (876)
.+.....|+|+|++|+|||||+++|++. .-.+... ..+.|.......+.+. ++.++||||||
T Consensus 6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~--~~~i~s~---------------~~~tT~~~~~~~~~~~~~~~i~lvDTPG 68 (308)
T 3iev_A 6 HHMKVGYVAIVGKPNVGKSTLLNNLLGT--KVSIISP---------------KAGTTRMRVLGVKNIPNEAQIIFLDTPG 68 (308)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHTS--CCSCCCS---------------SSCCCCSCEEEEEEETTTEEEEEEECCC
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhCC--CccccCC---------------CCCceeeEEEEEEecCCCCeEEEEECcC
Confidence 3455678999999999999999999876 3221111 1233434444455667 89999999999
Q ss_pred Cccch----------HHHHHHHHhcCeEEEEEcCCCccccchHHH-HHHhhhhcCCcEEEEeccccc
Q 047363 84 HMDFC----------SEVSTAARLSDGALVLVDAVEGVHIQTHAV-LRQSWIEKLTPCLVLNKIDRL 139 (876)
Q Consensus 84 h~dF~----------~e~~~al~~aDgaIlVvDa~egv~~~t~~~-l~~~~~~~ip~ilviNKiD~~ 139 (876)
+.++. ..+..+++.+|++|+|+|+.++...+...+ +..+...++|+++|+||+|+.
T Consensus 69 ~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~ 135 (308)
T 3iev_A 69 IYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKI 135 (308)
T ss_dssp CCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGS
T ss_pred CCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCC
Confidence 97754 677889999999999999999988888888 677777899999999999997
No 38
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.51 E-value=5.2e-15 Score=168.36 Aligned_cols=123 Identities=18% Similarity=0.185 Sum_probs=92.3
Q ss_pred CCCCCCCCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCe-EEEEE
Q 047363 1 MGDSDTRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDY-AINLI 79 (876)
Q Consensus 1 m~~~~~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~-~inlI 79 (876)
|.+......++|+|+|+.|+|||||+++|+.. .. ...+..+|+|+......+.+.+. .++||
T Consensus 26 m~~~~~~~~~kI~IvG~~~vGKSTLin~L~~~--~~---------------~~~~~~~gtT~d~~~~~~~~~~~~~l~li 88 (423)
T 3qq5_A 26 MRLPDAGFRRYIVVAGRRNVGKSSFMNALVGQ--NV---------------SIVSDYAGTTTDPVYKSMELHPIGPVTLV 88 (423)
T ss_dssp CCC---CCCEEEEEECSCSTTTTTTTTSSCC------------------------------CCCCEEEEEETTTEEEEEE
T ss_pred cccCCCCCCEEEEEECCCCCCHHHHHHHHHcC--CC---------------CccCCCCCeeeeeEEEEEEECCCCeEEEE
Confidence 33445567899999999999999999999755 21 11123457777777777877765 99999
Q ss_pred cCCCCccchH-------HHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccccc
Q 047363 80 DSPGHMDFCS-------EVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLISE 142 (876)
Q Consensus 80 DTPGh~dF~~-------e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~~e 142 (876)
|||||.+|.. .+..+++.+|++|+|+|+ +...++..+++.+.+.++|+++|+||+|+...+
T Consensus 89 DTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~ 156 (423)
T 3qq5_A 89 DTPGLDDVGELGRLRVEKARRVFYRADCGILVTDS--APTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEK 156 (423)
T ss_dssp ECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSS--SCCHHHHHHHHHHHHTTCCEEEECCCCTTTTCC
T ss_pred ECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeC--CChHHHHHHHHHHHhcCCCEEEEEeCcCCCCcc
Confidence 9999998843 367788889999999999 777888889999999999999999999998654
No 39
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.50 E-value=1.2e-14 Score=143.84 Aligned_cols=118 Identities=26% Similarity=0.404 Sum_probs=91.9
Q ss_pred CCCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCc
Q 047363 6 TRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHM 85 (876)
Q Consensus 6 ~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~ 85 (876)
..+..+|+++|+.|+|||||+++|+.. . ..... ..+++.......+.+.+..+++|||||+.
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~--~--~~~~~--------------~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 66 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHS--K--VTEQE--------------AGGITQHIGAYQVTVNDKKITFLDTPGHE 66 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTT--C--SSCSS--------------CCSSSTTCCCCEEEETTEEEEESCCCSSS
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCC--c--cccCC--------------CCceeEeeeEEEEEeCCceEEEEECCCCH
Confidence 356789999999999999999999865 2 11000 01122222223456678899999999999
Q ss_pred cchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEeccccccc
Q 047363 86 DFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLIS 141 (876)
Q Consensus 86 dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~~ 141 (876)
+|......+++.+|++|+|+|+.++...+....+..+...++|+++|+||+|+...
T Consensus 67 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~~ 122 (178)
T 2lkc_A 67 AFTTMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPEA 122 (178)
T ss_dssp SSSCSCCSSCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSCS
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCCcC
Confidence 99888888889999999999999888777777788777789999999999999753
No 40
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.50 E-value=8.6e-14 Score=147.81 Aligned_cols=118 Identities=13% Similarity=0.075 Sum_probs=87.3
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCcc
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMD 86 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~d 86 (876)
....+|+|+|++|+|||||+++|++. ...+.... .+++|.......+.+.++.++||||||+.+
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~--~~~~~~~~--------------~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~ 83 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRK--QAFESKLG--------------SQTLTKTCSKSQGSWGNREIVIIDTPDMFS 83 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTS--CCSCCCTT--------------SCCCCCSCEEEEEEETTEEEEEEECCGGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCC--CCcccCCC--------------CCceeeeeEEEEEEeCCCEEEEEECcCCCC
Confidence 35689999999999999999999876 33222110 112455555566778899999999999988
Q ss_pred chH-----------HHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhh-----cCCcEEEEe-ccccccc
Q 047363 87 FCS-----------EVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIE-----KLTPCLVLN-KIDRLIS 141 (876)
Q Consensus 87 F~~-----------e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~-----~ip~ilviN-KiD~~~~ 141 (876)
+.. .+..+++.+|++|+|+|+.. +..+...+++++.+. +.|+++|+| |+|+...
T Consensus 84 ~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~ 154 (260)
T 2xtp_A 84 WKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGG 154 (260)
T ss_dssp SSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCc
Confidence 732 23346788999999999985 666666677777665 678888888 9999743
No 41
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.47 E-value=2.6e-13 Score=133.79 Aligned_cols=119 Identities=15% Similarity=0.143 Sum_probs=85.1
Q ss_pred CCCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCc
Q 047363 6 TRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHM 85 (876)
Q Consensus 6 ~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~ 85 (876)
.++..+|+++|+.|+|||||+++|+.. ..... . ....|.+.....+.+....+.+.||||||+.
T Consensus 12 ~~~~~~i~v~G~~~~GKSsli~~l~~~--~~~~~--~------------~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 75 (179)
T 1z0f_A 12 YSYIFKYIIIGDMGVGKSCLLHQFTEK--KFMAD--C------------PHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 75 (179)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHS--CCCSS--C------------TTSCCCCEEEEEEEETTEEEEEEEEECTTGG
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcC--CCCCC--C------------CCccceEEEEEEEEECCeEEEEEEEECCCCh
Confidence 456789999999999999999999876 21100 0 0111333333333333335789999999999
Q ss_pred cchHHHHHHHHhcCeEEEEEcCCCccccchHHHH-HHhh---hhcCCcEEEEecccccc
Q 047363 86 DFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVL-RQSW---IEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 86 dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l-~~~~---~~~ip~ilviNKiD~~~ 140 (876)
+|......+++.+|++|+|+|+.+.........| ..+. ..++|+++|+||+|+..
T Consensus 76 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 134 (179)
T 1z0f_A 76 RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEA 134 (179)
T ss_dssp GTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred HhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 9999999999999999999999887554443332 2222 25789999999999964
No 42
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.47 E-value=4.1e-13 Score=137.56 Aligned_cols=133 Identities=17% Similarity=0.175 Sum_probs=87.5
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEc---CeEEEEEcCCC
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYK---DYAINLIDSPG 83 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~---~~~inlIDTPG 83 (876)
.+..+|+++|+.|+|||||+++|+.. . .... + .++......+.+. .+.++||||||
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~--~-~~~~-------~-----------~~~~~~~~~~~~~~~~~~~~~i~Dt~G 63 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTG--Q-YRDT-------Q-----------TSITDSSAIYKVNNNRGNSLTLIDLPG 63 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHS--C-CCCB-------C-----------CCCSCEEEEEECSSTTCCEEEEEECCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC--C-cccc-------c-----------CCcceeeEEEEecCCCccEEEEEECCC
Confidence 45689999999999999999999876 2 1100 0 0111111224444 57899999999
Q ss_pred CccchH-HHHHHHHhcCeEEEEEcCCCccc--cchHHHHHHhh------hhcCCcEEEEecccccccccccChHHHHHHH
Q 047363 84 HMDFCS-EVSTAARLSDGALVLVDAVEGVH--IQTHAVLRQSW------IEKLTPCLVLNKIDRLISELKLTPLEAYNRL 154 (876)
Q Consensus 84 h~dF~~-e~~~al~~aDgaIlVvDa~egv~--~~t~~~l~~~~------~~~ip~ilviNKiD~~~~e~~~~~~~~~~~l 154 (876)
+.+|.. .....++.+|++|+|+|+.+... ......|.... ..++|+++|+||+|+.... ..++....+
T Consensus 64 ~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~l 140 (214)
T 2fh5_B 64 HESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAK---SAKLIQQQL 140 (214)
T ss_dssp CHHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCC---CHHHHHHHH
T ss_pred ChhHHHHHHHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcc---cHHHHHHHH
Confidence 999987 56777899999999999976211 11122232221 2368999999999997542 355666666
Q ss_pred HHHHHHhhh
Q 047363 155 LRIVHEVNG 163 (876)
Q Consensus 155 ~~~l~~vn~ 163 (876)
...+..+..
T Consensus 141 ~~~l~~~~~ 149 (214)
T 2fh5_B 141 EKELNTLRV 149 (214)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 666654443
No 43
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.47 E-value=2.2e-13 Score=136.09 Aligned_cols=123 Identities=20% Similarity=0.129 Sum_probs=84.4
Q ss_pred CCCCCCCCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEc--------
Q 047363 1 MGDSDTRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYK-------- 72 (876)
Q Consensus 1 m~~~~~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~-------- 72 (876)
|.+...++..+|+|+|+.|+|||||+++|+.........+ ..|.+... ...+.+.
T Consensus 3 m~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~----------------t~~~~~~~-~~~~~~~~~~~~~~~ 65 (195)
T 3bc1_A 3 MSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFIT----------------TVGIDFRE-KRVVYRANGPDGAVG 65 (195)
T ss_dssp ---CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCC----------------CCSEEEEE-EEEEECTTSCCCSSC
T ss_pred CcccccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCccc----------------ccceeeee-EEEEEecCCcccccc
Confidence 5555566788999999999999999999987611110000 01111110 1122222
Q ss_pred ---CeEEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCccccchHH-HHHHhhh----hcCCcEEEEecccccc
Q 047363 73 ---DYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHA-VLRQSWI----EKLTPCLVLNKIDRLI 140 (876)
Q Consensus 73 ---~~~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~-~l~~~~~----~~ip~ilviNKiD~~~ 140 (876)
.+.++||||||+.+|......+++.+|++|+|+|+.+........ .+..+.. .++|+++|+||+|+..
T Consensus 66 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 141 (195)
T 3bc1_A 66 RGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLED 141 (195)
T ss_dssp CCEEEEEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGG
T ss_pred cCcEEEEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 368999999999999999999999999999999998766554433 3333332 5789999999999975
No 44
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.46 E-value=8.4e-14 Score=143.51 Aligned_cols=119 Identities=15% Similarity=0.114 Sum_probs=86.8
Q ss_pred CCCCCceEEEEEeCCCCcHHHHHHHHHHhhCCC--CcccccCCceeeccChhhhhhcceeeeeeEEEEE-EcCeEEEEEc
Q 047363 4 SDTRKIRNISILAHVDHGKTTLADHLIAATGGG--LLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALH-YKDYAINLID 80 (876)
Q Consensus 4 ~~~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g--~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~-~~~~~inlID 80 (876)
....+..+|+|+|+.|+|||||+++|++. .. .++ ...|.|.......+. +.+..++|||
T Consensus 24 ~~~~~~~~i~v~G~~~~GKSslin~l~~~--~~~~~~~----------------~~~~~t~~~~~~~~~~~~~~~~~l~D 85 (223)
T 4dhe_A 24 LPPTVQPEIAFAGRSNAGKSTAINVLCNQ--KRLAFAS----------------KTPGRTQHINYFSVGPAAEPVAHLVD 85 (223)
T ss_dssp SCCCCSCEEEEEESCHHHHHHHHHHHTTC--SSSSCTT----------------CCCCSCCCEEEEEESCTTSCSEEEEE
T ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHhCC--Ccceeec----------------CCCCcccceEEEEecCCCCCcEEEEc
Confidence 34456789999999999999999999765 21 111 012334333333443 4468899999
Q ss_pred CCCCcc----------chHHHHHHHHh---cCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccc
Q 047363 81 SPGHMD----------FCSEVSTAARL---SDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 81 TPGh~d----------F~~e~~~al~~---aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~ 140 (876)
|||+.+ |...+...++. +|++|+|+|+.++.......+++.+...++|+++|+||+|+..
T Consensus 86 tpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl~~ 158 (223)
T 4dhe_A 86 LPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKLT 158 (223)
T ss_dssp CCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGGSC
T ss_pred CCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEeccccCC
Confidence 999743 23444455555 7889999999998887777788888888999999999999975
No 45
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.46 E-value=1.7e-13 Score=139.00 Aligned_cols=120 Identities=18% Similarity=0.148 Sum_probs=80.7
Q ss_pred CCCCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCC
Q 047363 5 DTRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGH 84 (876)
Q Consensus 5 ~~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh 84 (876)
...+..+|+|+|+.|+|||||+++|+........ ....|.+.....+.+....+.+.||||||+
T Consensus 24 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~----------------~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~ 87 (199)
T 2p5s_A 24 SSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENI----------------SATLGVDFQMKTLIVDGERTVLQLWDTAGQ 87 (199)
T ss_dssp ----CEEEEEESSTTSSHHHHHHHHHHCCCC--------------------------CEEEEEEETTEEEEEEEEECTTC
T ss_pred CcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccC----------------CCCccceeEEEEEEECCEEEEEEEEECCCC
Confidence 4456789999999999999999999876110000 011233333333333333477999999999
Q ss_pred ccchHHHHHHHHhcCeEEEEEcCCCccccchHHHH-HHhh---hhcCCcEEEEecccccc
Q 047363 85 MDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVL-RQSW---IEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 85 ~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l-~~~~---~~~ip~ilviNKiD~~~ 140 (876)
.+|......+++.+|++|+|+|+.++........| ..+. ..++|+++|+||+|+..
T Consensus 88 ~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~ 147 (199)
T 2p5s_A 88 ERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRD 147 (199)
T ss_dssp TTCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHH
T ss_pred cchhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccc
Confidence 99999999999999999999999877655543333 2222 24789999999999864
No 46
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.45 E-value=1.9e-13 Score=145.65 Aligned_cols=113 Identities=17% Similarity=0.165 Sum_probs=86.4
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccch
Q 047363 9 IRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFC 88 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~ 88 (876)
+++|+++|++|+|||||+++|++. ... .. ...|+|+......+.+.+..++||||||+.+|.
T Consensus 1 m~kI~lvG~~n~GKSTL~n~L~g~--~~~----------v~------~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~ 62 (256)
T 3iby_A 1 MTHALLIGNPNCGKTTLFNALTNA--NQR----------VG------NWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLV 62 (256)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHTT--SEE----------EE------ECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC--CCC----------cc------CCCCceEEEEEEEEEECCeEEEEEeCCCccccc
Confidence 479999999999999999999765 211 11 113667777777888889999999999999886
Q ss_pred H----------HHHHHH--HhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEeccccccc
Q 047363 89 S----------EVSTAA--RLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLIS 141 (876)
Q Consensus 89 ~----------e~~~al--~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~~ 141 (876)
. -....+ +.+|++|+|+|+.. ......++.++.+.++|+++|+||+|+...
T Consensus 63 ~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~--~~~~~~l~~~l~~~~~pvilv~NK~Dl~~~ 125 (256)
T 3iby_A 63 ANAEGISQDEQIAAQSVIDLEYDCIINVIDACH--LERHLYLTSQLFELGKPVVVALNMMDIAEH 125 (256)
T ss_dssp ------CHHHHHHHHHHHHSCCSEEEEEEEGGG--HHHHHHHHHHHTTSCSCEEEEEECHHHHHH
T ss_pred ccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCC--chhHHHHHHHHHHcCCCEEEEEEChhcCCc
Confidence 4 223344 78999999999986 233445667777889999999999999753
No 47
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.45 E-value=1.1e-13 Score=138.86 Aligned_cols=129 Identities=15% Similarity=0.082 Sum_probs=81.8
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEE-EEEEcCeEEEEEcCCCCc
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSI-ALHYKDYAINLIDSPGHM 85 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i-~~~~~~~~inlIDTPGh~ 85 (876)
+...+|+++|+.|+|||||++.|.+. ..... .+.. .......+...|.+.....+ .+....+.++||||||+.
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~~~--~~~~~---~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 85 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIYSK--VPEGR---KGEM-VSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQV 85 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHT--SCGGG---BCCC-EEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCC
T ss_pred ccccEEEEECCCCCCHHHHHHHHHhh--ccccc---cccc-cccccccccceeeeecccccccccCCceEEEEEeCCChH
Confidence 45678999999999999999766544 11100 0000 00000000111111111111 112234689999999999
Q ss_pred cchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhh----h-----hcCCcEEEEeccccccc
Q 047363 86 DFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSW----I-----EKLTPCLVLNKIDRLIS 141 (876)
Q Consensus 86 dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~----~-----~~ip~ilviNKiD~~~~ 141 (876)
+|......+++.+|++|+|+|+.++...+....+..+. . .++|+++|+||+|+...
T Consensus 86 ~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~ 150 (198)
T 3t1o_A 86 FYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDA 150 (198)
T ss_dssp SCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTC
T ss_pred HHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccc
Confidence 99999999999999999999999765555444333322 2 57899999999999753
No 48
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.45 E-value=4.4e-13 Score=133.61 Aligned_cols=117 Identities=16% Similarity=0.129 Sum_probs=83.7
Q ss_pred CCCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcC--eEEEEEcCCC
Q 047363 6 TRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKD--YAINLIDSPG 83 (876)
Q Consensus 6 ~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~--~~inlIDTPG 83 (876)
.++..+|+++|+.|+|||||+++|+.. ...... ...++.......+.+.+ ..+.||||||
T Consensus 7 ~~~~~ki~v~G~~~~GKSsli~~l~~~--~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G 68 (186)
T 2bme_A 7 YDFLFKFLVIGNAGTGKSCLLHQFIEK--KFKDDS----------------NHTIGVEFGSKIINVGGKYVKLQIWDTAG 68 (186)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHS--SCCTTC----------------CCCSEEEEEEEEEEETTEEEEEEEEEECC
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcC--CCCCCC----------------CCccceEEEEEEEEECCEEEEEEEEeCCC
Confidence 456789999999999999999999876 211100 00112122222333443 6899999999
Q ss_pred CccchHHHHHHHHhcCeEEEEEcCCCccccchHHHH-HH---hhhhcCCcEEEEecccccc
Q 047363 84 HMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVL-RQ---SWIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 84 h~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l-~~---~~~~~ip~ilviNKiD~~~ 140 (876)
+.+|.......++.+|++|+|+|+.+.........| .. ....++|+++|+||+|+..
T Consensus 69 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 129 (186)
T 2bme_A 69 QERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDA 129 (186)
T ss_dssp SGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred cHHHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 999999999999999999999999886654443333 22 2235789999999999964
No 49
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.44 E-value=2.2e-13 Score=134.71 Aligned_cols=120 Identities=17% Similarity=0.170 Sum_probs=72.8
Q ss_pred CCCCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEc---CeEEEEEcC
Q 047363 5 DTRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYK---DYAINLIDS 81 (876)
Q Consensus 5 ~~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~---~~~inlIDT 81 (876)
...+..+|+++|+.|+|||||+++|+......... ...|.+... ..+.+. ...+.+|||
T Consensus 4 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~----------------~~~~~~~~~--~~~~~~~~~~~~~~l~Dt 65 (182)
T 1ky3_A 4 RKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYK----------------ATIGADFLT--KEVTVDGDKVATMQVWDT 65 (182)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC-------------------CCCSCEE--EEECCSSSCCEEEEEECC
T ss_pred ccCceEEEEEECCCCCCHHHHHHHHHhCcCCcccC----------------CccceEEEE--EEEEEcCCcEEEEEEEEC
Confidence 34567899999999999999999998761110000 001112211 222222 468999999
Q ss_pred CCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHH-HHhhh-------hcCCcEEEEecccccccc
Q 047363 82 PGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVL-RQSWI-------EKLTPCLVLNKIDRLISE 142 (876)
Q Consensus 82 PGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l-~~~~~-------~~ip~ilviNKiD~~~~e 142 (876)
||+.+|.......++.+|++|+|+|+.+.........| ..+.. .++|+++|+||+|+...+
T Consensus 66 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 134 (182)
T 1ky3_A 66 AGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESK 134 (182)
T ss_dssp C----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGG
T ss_pred CCChHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCcccccc
Confidence 99999998888899999999999999877654443333 22221 578999999999996543
No 50
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.44 E-value=3.7e-13 Score=135.40 Aligned_cols=118 Identities=12% Similarity=0.147 Sum_probs=83.1
Q ss_pred CCCCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCC-
Q 047363 5 DTRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPG- 83 (876)
Q Consensus 5 ~~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPG- 83 (876)
...+..+|+++|+.|+|||||+++|++........ ...|.|....... . +..+.+|||||
T Consensus 19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~----------------~~~~~t~~~~~~~--~-~~~~~l~Dt~G~ 79 (195)
T 1svi_A 19 PEGGLPEIALAGRSNVGKSSFINSLINRKNLARTS----------------SKPGKTQTLNFYI--I-NDELHFVDVPGY 79 (195)
T ss_dssp CCSCCCEEEEEEBTTSSHHHHHHHHHTC-----------------------------CCEEEEE--E-TTTEEEEECCCB
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccC----------------CCCCceeeEEEEE--E-CCcEEEEECCCC
Confidence 34568999999999999999999998651000000 1123333322222 2 34799999999
Q ss_pred ---------CccchHHHHHHHHhc---CeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEeccccccc
Q 047363 84 ---------HMDFCSEVSTAARLS---DGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLIS 141 (876)
Q Consensus 84 ---------h~dF~~e~~~al~~a---DgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~~ 141 (876)
+..|.......++.+ |++++|+|+.++.......+++.+...++|+++|+||+|+...
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~ 149 (195)
T 1svi_A 80 GFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPK 149 (195)
T ss_dssp CCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCG
T ss_pred CccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCCh
Confidence 445555566667776 9999999999888777777778887889999999999999753
No 51
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.44 E-value=3.4e-13 Score=131.65 Aligned_cols=117 Identities=15% Similarity=0.148 Sum_probs=83.6
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccc
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDF 87 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF 87 (876)
+..+|+++|+.|+|||||+++|+.. .- ... .+...|.+.....+.+....+.+++|||||+.+|
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~--~~--~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~ 68 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKG--QF--HEF------------QESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERY 68 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS--CC--CTT------------CCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGG
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcC--CC--CCC------------CCCccceEEEEEEEEECCEEEEEEEEeCCCcHHh
Confidence 4578999999999999999999875 21 000 0111233433333344334678999999999999
Q ss_pred hHHHHHHHHhcCeEEEEEcCCCccccchHH-HHHHhhh---hcCCcEEEEecccccc
Q 047363 88 CSEVSTAARLSDGALVLVDAVEGVHIQTHA-VLRQSWI---EKLTPCLVLNKIDRLI 140 (876)
Q Consensus 88 ~~e~~~al~~aDgaIlVvDa~egv~~~t~~-~l~~~~~---~~ip~ilviNKiD~~~ 140 (876)
.......++.+|++|+|+|+.+........ .+..+.. .++|+++|+||+|+..
T Consensus 69 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~ 125 (170)
T 1r2q_A 69 HSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLAN 125 (170)
T ss_dssp GGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred hhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCcc
Confidence 999999999999999999998765443322 2333333 3678899999999965
No 52
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.44 E-value=6.3e-13 Score=131.28 Aligned_cols=118 Identities=14% Similarity=0.146 Sum_probs=82.5
Q ss_pred CCCCCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEc--CeEEEEEcC
Q 047363 4 SDTRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYK--DYAINLIDS 81 (876)
Q Consensus 4 ~~~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~--~~~inlIDT 81 (876)
..+.+..+|+++|+.|+|||||+++|+.. .- .. .... ..+..+. ..+.+. .+.+.||||
T Consensus 4 ~~~~~~~~i~v~G~~~~GKssli~~l~~~--~~-~~-~~~~------------t~~~~~~---~~~~~~~~~~~~~~~Dt 64 (181)
T 2fn4_A 4 PPPSETHKLVVVGGGGVGKSALTIQFIQS--YF-VS-DYDP------------TIEDSYT---KICSVDGIPARLDILDT 64 (181)
T ss_dssp CCSSCEEEEEEEECTTSSHHHHHHHHHHS--SC-CS-SCCT------------TCCEEEE---EEEEETTEEEEEEEEEC
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhC--cC-cc-ccCC------------CcCceEE---EEEEECCEEEEEEEEEC
Confidence 34567789999999999999999999876 21 10 0000 0111111 123333 368899999
Q ss_pred CCCccchHHHHHHHHhcCeEEEEEcCCCccccchH-----HHHHHhhhhcCCcEEEEecccccc
Q 047363 82 PGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTH-----AVLRQSWIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 82 PGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~-----~~l~~~~~~~ip~ilviNKiD~~~ 140 (876)
||+.+|.......++.+|++|+|+|+.+....... .+++.....++|+++|+||+|+..
T Consensus 65 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 128 (181)
T 2fn4_A 65 AGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLES 128 (181)
T ss_dssp CCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGG
T ss_pred CCchhhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 99999988889999999999999999875433222 222333345789999999999975
No 53
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.44 E-value=4.2e-14 Score=154.27 Aligned_cols=116 Identities=18% Similarity=0.164 Sum_probs=86.7
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCc-
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHM- 85 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~- 85 (876)
.+..+|+|+|++|+|||||+++|++. ...+... .+ +.|.......+.+.++.++++||||+.
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~--~~~i~s~----------~~-----~tTr~~~~gi~~~~~~~i~~iDTpG~~~ 68 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQ--KISITSR----------KA-----QTTRHRIVGIHTEGAYQAIYVDTPGLHM 68 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTC--SEEECCC----------CS-----SCCSSCEEEEEEETTEEEEEESSSSCCH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCC--CccccCC----------CC-----CcceeeEEEEEEECCeeEEEEECcCCCc
Confidence 35578999999999999999999876 2111110 01 111111122355678999999999998
Q ss_pred --------cchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccc
Q 047363 86 --------DFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 86 --------dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~ 140 (876)
+|...+..+++.+|++++|+|+.+ +..++..+++.+...+.|.++|+||+|+..
T Consensus 69 ~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P~ilvlNK~D~~~ 130 (301)
T 1ega_A 69 EEKRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNVQ 130 (301)
T ss_dssp HHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEEEEESTTTCC
T ss_pred cchhhHHHHHHHHHHHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHhcCCCEEEEEECcccCc
Confidence 344445677889999999999987 888888888887777899999999999975
No 54
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.43 E-value=8.1e-13 Score=128.49 Aligned_cols=117 Identities=18% Similarity=0.206 Sum_probs=77.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccc
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDF 87 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF 87 (876)
+..+|+++|+.|+|||||+++|+.. . ... .... ..+.+. ...+.+....+.+.+|||||+.+|
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~--~-~~~-~~~~------------t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~ 65 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYD--E-FVE-DYEP------------TKADSY-RKKVVLDGEEVQIDILDTAGQEDY 65 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS--C-CCS-CCCT------------TCCEEE-EEEEEETTEEEEEEEEECCC---C
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC--c-cCC-CCCC------------CcceEE-EEEEEECCEEEEEEEEECCCcchh
Confidence 3578999999999999999999876 2 110 0000 001111 111122222368999999999999
Q ss_pred hHHHHHHHHhcCeEEEEEcCCCccccchHH-HHHHh----hhhcCCcEEEEeccccccc
Q 047363 88 CSEVSTAARLSDGALVLVDAVEGVHIQTHA-VLRQS----WIEKLTPCLVLNKIDRLIS 141 (876)
Q Consensus 88 ~~e~~~al~~aDgaIlVvDa~egv~~~t~~-~l~~~----~~~~ip~ilviNKiD~~~~ 141 (876)
......+++.+|++|+|+|+.+........ .+..+ ...++|+++|+||+|+...
T Consensus 66 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 124 (168)
T 1u8z_A 66 AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 124 (168)
T ss_dssp HHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGG
T ss_pred HHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECcccccc
Confidence 999999999999999999998754433322 22222 2247899999999999753
No 55
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.43 E-value=4e-13 Score=134.91 Aligned_cols=119 Identities=16% Similarity=0.120 Sum_probs=85.2
Q ss_pred CCCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCc
Q 047363 6 TRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHM 85 (876)
Q Consensus 6 ~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~ 85 (876)
.+...+|+|+|+.|+|||||+++|+......... ...|.+.....+.+....+.++||||||+.
T Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~----------------~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 82 (189)
T 2gf9_A 19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFV----------------STVGIDFKVKTVYRHDKRIKLQIWDTAGQE 82 (189)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCC----------------CCCCCEEEEEEEEETTEEEEEEEEECCSCC
T ss_pred cCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcC----------------CceeEEEEEEEEEECCeEEEEEEEeCCCcH
Confidence 3456899999999999999999998761111000 012334333333333345789999999999
Q ss_pred cchHHHHHHHHhcCeEEEEEcCCCccccchHH-HHHHhhh---hcCCcEEEEecccccc
Q 047363 86 DFCSEVSTAARLSDGALVLVDAVEGVHIQTHA-VLRQSWI---EKLTPCLVLNKIDRLI 140 (876)
Q Consensus 86 dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~-~l~~~~~---~~ip~ilviNKiD~~~ 140 (876)
+|......+++.+|++|+|+|+.+........ .+..+.. .++|+++|+||+|+..
T Consensus 83 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 141 (189)
T 2gf9_A 83 RYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLED 141 (189)
T ss_dssp SSCCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred HHhhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccc
Confidence 99888889999999999999998765444332 3344443 3789999999999975
No 56
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.43 E-value=7.3e-13 Score=129.25 Aligned_cols=116 Identities=16% Similarity=0.197 Sum_probs=81.9
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccchH
Q 047363 10 RNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFCS 89 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~~ 89 (876)
.+|+++|+.|+|||||+++|+......... ...|.+.....+.+....+.+.+|||||+.+|..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~ 67 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKE----------------PTIGAAFLTQRVTINEHTVKFEIWDTAGQERFAS 67 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCC----------------CCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGG
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCC----------------CccceeEEEEEEEECCEEEEEEEEECCCChhhhh
Confidence 579999999999999999998761110000 0113333333333322346899999999999999
Q ss_pred HHHHHHHhcCeEEEEEcCCCccccchHHH-HHHhh---hhcCCcEEEEeccccccc
Q 047363 90 EVSTAARLSDGALVLVDAVEGVHIQTHAV-LRQSW---IEKLTPCLVLNKIDRLIS 141 (876)
Q Consensus 90 e~~~al~~aDgaIlVvDa~egv~~~t~~~-l~~~~---~~~ip~ilviNKiD~~~~ 141 (876)
.....++.+|++|+|+|+.+......... +..+. ..++|+++|+||+|+...
T Consensus 68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 123 (170)
T 1ek0_A 68 LAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQE 123 (170)
T ss_dssp GHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGS
T ss_pred hhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccc
Confidence 99999999999999999987654433322 22332 247899999999999754
No 57
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.43 E-value=3.2e-13 Score=144.71 Aligned_cols=113 Identities=18% Similarity=0.230 Sum_probs=86.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccc
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDF 87 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF 87 (876)
++++|+++|++|+|||||+++|++. ... . ....|+|+......+.+.++.+++|||||+.+|
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~--~~~----------~------~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~ 63 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGL--RQH----------V------GNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSL 63 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTT--CEE----------E------EECTTSSCEEEEEEEEETTEEEEEEECCCCSCC
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCC--Ccc----------c------CCCCCeEEEeeEEEEEECCceEEEEeCCCcccc
Confidence 4689999999999999999999765 210 0 012466777777788889999999999999998
Q ss_pred hH------HHHHHH--HhcCeEEEEEcCCCccccchHHHHHHhhhhc-CCcEEEEecccccc
Q 047363 88 CS------EVSTAA--RLSDGALVLVDAVEGVHIQTHAVLRQSWIEK-LTPCLVLNKIDRLI 140 (876)
Q Consensus 88 ~~------e~~~al--~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~-ip~ilviNKiD~~~ 140 (876)
.. .....+ ..+|++|+|+|+..+ ......+.++.+.+ +|+++|+||+|+..
T Consensus 64 ~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~--~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 123 (271)
T 3k53_A 64 TAHSIDELIARNFILDGNADVIVDIVDSTCL--MRNLFLTLELFEMEVKNIILVLNKFDLLK 123 (271)
T ss_dssp CSSCHHHHHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTTCCSEEEEEECHHHHH
T ss_pred ccCCHHHHHHHHhhhccCCcEEEEEecCCcc--hhhHHHHHHHHhcCCCCEEEEEEChhcCc
Confidence 65 233333 469999999999875 24455666777777 99999999999864
No 58
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.43 E-value=5.2e-13 Score=132.27 Aligned_cols=119 Identities=16% Similarity=0.185 Sum_probs=82.8
Q ss_pred CCCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCc
Q 047363 6 TRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHM 85 (876)
Q Consensus 6 ~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~ 85 (876)
.....+|+++|+.|+|||||+++|+.. .-.... ....|.+.....+.+....+.+.||||||+.
T Consensus 9 ~~~~~ki~v~G~~~~GKSsli~~l~~~--~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 72 (181)
T 2efe_B 9 KSINAKLVLLGDVGAGKSSLVLRFVKD--QFVEFQ--------------ESTIGAAFFSQTLAVNDATVKFEIWDTAGQE 72 (181)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHC--CCTTTS--------------CCCSCCSEEEEEEEETTEEEEEEEEECCCSG
T ss_pred CccceEEEEECcCCCCHHHHHHHHHcC--CCCCcC--------------CCCceeEEEEEEEEECCEEEEEEEEeCCCCh
Confidence 344578999999999999999999876 211000 0011222222222222234689999999999
Q ss_pred cchHHHHHHHHhcCeEEEEEcCCCccccch-HHHHHHhhhh---cCCcEEEEecccccc
Q 047363 86 DFCSEVSTAARLSDGALVLVDAVEGVHIQT-HAVLRQSWIE---KLTPCLVLNKIDRLI 140 (876)
Q Consensus 86 dF~~e~~~al~~aDgaIlVvDa~egv~~~t-~~~l~~~~~~---~ip~ilviNKiD~~~ 140 (876)
+|.......++.+|++|+|+|+.+...... ...+..+... ++|+++|+||+|+..
T Consensus 73 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~ 131 (181)
T 2efe_B 73 RYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLD 131 (181)
T ss_dssp GGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTT
T ss_pred hhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccc
Confidence 999999999999999999999987665333 2333444333 788999999999964
No 59
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.43 E-value=5.8e-13 Score=134.34 Aligned_cols=118 Identities=14% Similarity=0.105 Sum_probs=85.3
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCcc
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMD 86 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~d 86 (876)
++..+|+|+|+.|+|||||+++|+......... ...|.+.....+.+....+.+.||||||+.+
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 84 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNIS----------------PTIGASFMTKTVPCGNELHKFLIWDTAGQER 84 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCC----------------CCSSEEEEEEEEECSSSEEEEEEEEECCSGG
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcC----------------CCcceeEEEEEEEeCCEEEEEEEEcCCCchh
Confidence 446789999999999999999998761110110 1123444333344434567899999999999
Q ss_pred chHHHHHHHHhcCeEEEEEcCCCccccchHHH-HHHhhh---hcCCcEEEEecccccc
Q 047363 87 FCSEVSTAARLSDGALVLVDAVEGVHIQTHAV-LRQSWI---EKLTPCLVLNKIDRLI 140 (876)
Q Consensus 87 F~~e~~~al~~aDgaIlVvDa~egv~~~t~~~-l~~~~~---~~ip~ilviNKiD~~~ 140 (876)
|.......++.+|++|+|+|+.+......... +..+.. .++|+++|+||+|+..
T Consensus 85 ~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~ 142 (192)
T 2fg5_A 85 FHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSD 142 (192)
T ss_dssp GGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred hHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccc
Confidence 99999999999999999999987655443332 333333 3789999999999964
No 60
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.43 E-value=7.3e-13 Score=128.69 Aligned_cols=114 Identities=18% Similarity=0.214 Sum_probs=78.5
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccchH
Q 047363 10 RNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFCS 89 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~~ 89 (876)
.+|+++|++|+|||||+++|+.. .-. ...... .+.. ....+.+....+.+.+|||||+.+|..
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~--~~~--~~~~~~------------~~~~-~~~~~~~~~~~~~~~l~D~~G~~~~~~ 66 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG--TFI--EKYDPT------------IEDF-YRKEIEVDSSPSVLEILDTAGTEQFAS 66 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS--CCC--SCCCTT------------CCEE-EEEEEEETTEEEEEEEEECCCTTCCHH
T ss_pred EEEEEECCCCCCHHHHHHHHHcC--CCc--ccCCCC------------ccee-EEEEEEECCEEEEEEEEECCCchhhHH
Confidence 68999999999999999999876 211 000000 0111 111122222245699999999999999
Q ss_pred HHHHHHHhcCeEEEEEcCCCccccchH-----HHHHHhhhhcCCcEEEEecccccc
Q 047363 90 EVSTAARLSDGALVLVDAVEGVHIQTH-----AVLRQSWIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 90 e~~~al~~aDgaIlVvDa~egv~~~t~-----~~l~~~~~~~ip~ilviNKiD~~~ 140 (876)
.....++.+|++++|+|+.+....... .+.+.....++|+++|+||+|+..
T Consensus 67 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 122 (167)
T 1kao_A 67 MRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLES 122 (167)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGG
T ss_pred HHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccc
Confidence 999999999999999999875443222 222333335799999999999864
No 61
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.43 E-value=2.2e-13 Score=134.64 Aligned_cols=119 Identities=17% Similarity=0.124 Sum_probs=84.3
Q ss_pred CCCCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcC--eEEEEEcCC
Q 047363 5 DTRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKD--YAINLIDSP 82 (876)
Q Consensus 5 ~~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~--~~inlIDTP 82 (876)
..+...+|+++|+.|+|||||+++|+.. .-.. +...+++.......+.+.+ +.+++||||
T Consensus 5 ~~~~~~~i~v~G~~~~GKssl~~~l~~~--~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~ 66 (181)
T 3tw8_B 5 DYDHLFKLLIIGDSGVGKSSLLLRFADN--TFSG----------------SYITTIGVDFKIRTVEINGEKVKLQIWDTA 66 (181)
T ss_dssp -CCEEEEEEEECCTTSCHHHHHHHHCSC--C-------------------CCTTTBSEEEEEEEEEETTEEEEEEEEEET
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcC--CCCC----------------ccCCCceeEEEEEEEEECCEEEEEEEEcCC
Confidence 4567889999999999999999999654 1000 0011223333334444555 789999999
Q ss_pred CCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHH-HHhhh--hcCCcEEEEeccccccc
Q 047363 83 GHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVL-RQSWI--EKLTPCLVLNKIDRLIS 141 (876)
Q Consensus 83 Gh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l-~~~~~--~~ip~ilviNKiD~~~~ 141 (876)
|+.+|......+++.+|++|+|+|+.++........| ..+.. .++|+++|+||+|+...
T Consensus 67 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 128 (181)
T 3tw8_B 67 GQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPER 128 (181)
T ss_dssp TGGGCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGG
T ss_pred CchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchh
Confidence 9999988888899999999999999886554443322 33322 25899999999998754
No 62
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.43 E-value=8.7e-13 Score=139.63 Aligned_cols=118 Identities=13% Similarity=0.163 Sum_probs=87.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCC---
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGH--- 84 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh--- 84 (876)
.-.+|+++|++|+|||||+++|++. ...+... ...|.|.......+.+.+..++||||||.
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~--~~~~~~~--------------~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~ 83 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQ--RRFFSRL--------------GATSVTRACTTGSRRWDKCHVEVVDTPDIFSS 83 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTS--CCC-----------------------CCSCEEEEEEETTEEEEEEECCSCSST
T ss_pred CceEEEEECCCCCcHHHHHHHHhCC--CCccccC--------------CCCCccccEEEEEEEECCcEEEEEECCCCCCC
Confidence 4578999999999999999999876 3222110 11245555556677788999999999998
Q ss_pred -----ccchHHHHHHH----HhcCeEEEEEcCCCccccchHHHHHHhhhh------cCCcEEEEecccccccc
Q 047363 85 -----MDFCSEVSTAA----RLSDGALVLVDAVEGVHIQTHAVLRQSWIE------KLTPCLVLNKIDRLISE 142 (876)
Q Consensus 85 -----~dF~~e~~~al----~~aDgaIlVvDa~egv~~~t~~~l~~~~~~------~ip~ilviNKiD~~~~e 142 (876)
.+|..++..++ +.+|++|+|+|+.. .......+++.+.+. +.|+|||+||+|+...+
T Consensus 84 ~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~ 155 (247)
T 3lxw_A 84 QVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGR-FTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGS 155 (247)
T ss_dssp THHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTB-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCC
T ss_pred CCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCC-CCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCC
Confidence 56777777777 89999999999974 555555666666553 78999999999997543
No 63
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.43 E-value=5.5e-13 Score=135.29 Aligned_cols=118 Identities=19% Similarity=0.163 Sum_probs=84.2
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCcc
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMD 86 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~d 86 (876)
+...+|+|+|+.|+|||||+++|+.. . .... + ....|++.....+.+......+.||||||+.+
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~--~--~~~~------~------~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 69 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADD--S--FTPA------F------VSTVGIDFKVKTIYRNDKRIKLQIWDTAGLER 69 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTC--C--CCSC------C------CCCCSEEEEEEEEEETTEEEEEEEEEECCSGG
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcC--C--CCCC------c------CCccceeEEEEEEEECCeEEEEEEEECCCchh
Confidence 45789999999999999999999865 2 1100 0 00123343333333333357899999999999
Q ss_pred chHHHHHHHHhcCeEEEEEcCCCccccchHH-HHHHhhh---hcCCcEEEEecccccc
Q 047363 87 FCSEVSTAARLSDGALVLVDAVEGVHIQTHA-VLRQSWI---EKLTPCLVLNKIDRLI 140 (876)
Q Consensus 87 F~~e~~~al~~aDgaIlVvDa~egv~~~t~~-~l~~~~~---~~ip~ilviNKiD~~~ 140 (876)
|......+++.+|++|+|+|+.+........ .+..+.. .++|+++|+||+|+..
T Consensus 70 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 127 (203)
T 1zbd_A 70 YRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMED 127 (203)
T ss_dssp GHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTT
T ss_pred hcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCc
Confidence 9999999999999999999998765443332 2333333 4789999999999965
No 64
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.43 E-value=6.8e-13 Score=133.37 Aligned_cols=117 Identities=16% Similarity=0.141 Sum_probs=84.4
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcC--eEEEEEcCCCC
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKD--YAINLIDSPGH 84 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~--~~inlIDTPGh 84 (876)
+...+|+|+|+.|+|||||+++|+.. .-... ....++.......+.+.+ +.+.||||||+
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~--~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 75 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADD--TYTES----------------YISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 75 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS--CCCSC----------------CCCCSSEEEEEEEEEETTEEEEEEEEEECCS
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcC--CCCCC----------------CCCcccceEEEEEEEECCEEEEEEEEECCCc
Confidence 45789999999999999999999876 21110 001222223333444444 68999999999
Q ss_pred ccchHHHHHHHHhcCeEEEEEcCCCccccchHH-HHHHhhh---hcCCcEEEEeccccccc
Q 047363 85 MDFCSEVSTAARLSDGALVLVDAVEGVHIQTHA-VLRQSWI---EKLTPCLVLNKIDRLIS 141 (876)
Q Consensus 85 ~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~-~l~~~~~---~~ip~ilviNKiD~~~~ 141 (876)
.+|......+++.+|++|+|+|+.+........ .+..+.. .++|+++|+||+|+...
T Consensus 76 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~ 136 (196)
T 3tkl_A 76 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 136 (196)
T ss_dssp GGGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTT
T ss_pred HhhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccc
Confidence 999999999999999999999998765544333 2233322 37899999999999754
No 65
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.42 E-value=6.3e-13 Score=129.67 Aligned_cols=118 Identities=14% Similarity=0.198 Sum_probs=81.2
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCcc
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMD 86 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~d 86 (876)
++..+|+++|+.|+|||||+++|+.. . ..... ....|.+.....+.+....+.+.+|||||+.+
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~--~--~~~~~------------~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 66 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKG--I--FTKDY------------KKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 66 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHC--C--CCCCS------------SCCCSSSEEEEEEEETTEEEEEEEECCTTGGG
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcC--C--CCCCC------------CCceEEEEEEEEEEECCEEEEEEEEcCCCcHh
Confidence 45678999999999999999999875 2 11000 00012222222222222246899999999999
Q ss_pred chHHHHHHHHhcCeEEEEEcCCCccccchHHHH-HHhhh--hcCCcEEEEecccccc
Q 047363 87 FCSEVSTAARLSDGALVLVDAVEGVHIQTHAVL-RQSWI--EKLTPCLVLNKIDRLI 140 (876)
Q Consensus 87 F~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l-~~~~~--~~ip~ilviNKiD~~~ 140 (876)
|.......++.+|++|+|+|+.+.........| ..+.. .++|+++|+||+|+..
T Consensus 67 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 123 (168)
T 1z2a_A 67 FDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLD 123 (168)
T ss_dssp TTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGG
T ss_pred HHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCc
Confidence 988889999999999999999876544333222 33322 3789999999999975
No 66
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.42 E-value=6.8e-13 Score=133.50 Aligned_cols=121 Identities=17% Similarity=0.157 Sum_probs=85.9
Q ss_pred CCCCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCC
Q 047363 5 DTRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGH 84 (876)
Q Consensus 5 ~~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh 84 (876)
..++..+|+|+|+.|+|||||+++|+.. ...... ....|.+.....+.+......+.||||||+
T Consensus 21 ~~~~~~ki~v~G~~~~GKSsLi~~l~~~--~~~~~~--------------~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 84 (193)
T 2oil_A 21 DYNFVFKVVLIGESGVGKTNLLSRFTRN--EFSHDS--------------RTTIGVEFSTRTVMLGTAAVKAQIWDTAGL 84 (193)
T ss_dssp CCSEEEEEEEESSTTSSHHHHHHHHHHS--CCCSSC--------------CCCSSEEEEEEEEEETTEEEEEEEEEESCC
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcC--CCCCCC--------------CCccceeEEEEEEEECCEEEEEEEEeCCCc
Confidence 3455689999999999999999999876 211100 011233333333333334578999999999
Q ss_pred ccchHHHHHHHHhcCeEEEEEcCCCccccchHH-HHHHhhh---hcCCcEEEEeccccccc
Q 047363 85 MDFCSEVSTAARLSDGALVLVDAVEGVHIQTHA-VLRQSWI---EKLTPCLVLNKIDRLIS 141 (876)
Q Consensus 85 ~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~-~l~~~~~---~~ip~ilviNKiD~~~~ 141 (876)
.+|.......++.+|++|+|+|+.+........ .+..+.. .++|+++|+||+|+...
T Consensus 85 ~~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~ 145 (193)
T 2oil_A 85 ERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQA 145 (193)
T ss_dssp CTTCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGG
T ss_pred hhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccc
Confidence 999999999999999999999998765543322 3333332 47899999999999753
No 67
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.42 E-value=1.3e-12 Score=129.12 Aligned_cols=116 Identities=18% Similarity=0.093 Sum_probs=81.5
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcC---eEEEEEcCCC
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKD---YAINLIDSPG 83 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~---~~inlIDTPG 83 (876)
.+..+|+++|+.|+|||||+++|+..... .......|.... ...+.+.+ +.+++|||||
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~----------------~~~~~t~~~~~~--~~~~~~~~~~~~~~~~~Dt~G 65 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFG----------------KQYKQTIGLDFF--LRRITLPGNLNVTLQIWDIGG 65 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTT----------------HHHHHTTTSSEE--EEEEEETTTEEEEEEEEECTT
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCC----------------CCCCCceeEEEE--EEEEEeCCCCEEEEEEEECCC
Confidence 45578999999999999999999865100 000111122222 23344443 7899999999
Q ss_pred CccchHHHHHHHHhcCeEEEEEcCCCccccchHHHH-HHhhh-----hcCC-cEEEEecccccc
Q 047363 84 HMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVL-RQSWI-----EKLT-PCLVLNKIDRLI 140 (876)
Q Consensus 84 h~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l-~~~~~-----~~ip-~ilviNKiD~~~ 140 (876)
+.+|......+++.+|++|+|+|+.+.........| ..+.. .+.| +++|+||+|+..
T Consensus 66 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~ 129 (178)
T 2hxs_A 66 QTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEH 129 (178)
T ss_dssp CCTTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGG
T ss_pred CccccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEcccccc
Confidence 999999999999999999999999876654443333 33322 2567 688999999975
No 68
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.42 E-value=6.4e-13 Score=131.12 Aligned_cols=115 Identities=17% Similarity=0.149 Sum_probs=81.7
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcC--eEEEEEcCCCC
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKD--YAINLIDSPGH 84 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~--~~inlIDTPGh 84 (876)
.+..+|+++|++|+|||||+++|+.. .-... .....|.+.. ...+.+.+ ..+.+|||||+
T Consensus 5 ~~~~~i~v~G~~~~GKSsli~~l~~~--~~~~~--------------~~~~~~~~~~--~~~~~~~~~~~~~~i~Dt~G~ 66 (177)
T 1wms_A 5 SSLFKVILLGDGGVGKSSLMNRYVTN--KFDTQ--------------LFHTIGVEFL--NKDLEVDGHFVTMQIWDTAGQ 66 (177)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHS--CCCC------------------CCSEEEE--EEEEEETTEEEEEEEEECCCC
T ss_pred cceeEEEEECCCCCCHHHHHHHHHcC--CCCCC--------------CCCceeeeEE--EEEEEECCEEEEEEEEeCCCc
Confidence 45689999999999999999999876 21000 0011122222 23333443 68999999999
Q ss_pred ccchHHHHHHHHhcCeEEEEEcCCCccccchHHHH-HHhhh-------hcCCcEEEEeccccc
Q 047363 85 MDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVL-RQSWI-------EKLTPCLVLNKIDRL 139 (876)
Q Consensus 85 ~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l-~~~~~-------~~ip~ilviNKiD~~ 139 (876)
.+|.......++.+|++|+|+|+.+.........| ..+.. .++|+++|+||+|+.
T Consensus 67 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 129 (177)
T 1wms_A 67 ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS 129 (177)
T ss_dssp GGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS
T ss_pred hhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc
Confidence 99999889999999999999999877654443322 22221 578999999999997
No 69
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.42 E-value=1.5e-12 Score=132.76 Aligned_cols=117 Identities=13% Similarity=0.189 Sum_probs=81.8
Q ss_pred CCCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcC--eEEEEEcCCC
Q 047363 6 TRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKD--YAINLIDSPG 83 (876)
Q Consensus 6 ~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~--~~inlIDTPG 83 (876)
.++..+|+|+|+.|+|||||+++|+.. . .... . ....|.+. ....+.+.+ +.+.||||||
T Consensus 26 ~~~~~ki~vvG~~~vGKSsli~~l~~~--~--~~~~----------~--~~t~~~~~--~~~~~~~~~~~~~l~i~Dt~G 87 (201)
T 2hup_A 26 YDFLFKLVLVGDASVGKTCVVQRFKTG--A--FSER----------Q--GSTIGVDF--TMKTLEIQGKRVKLQIWDTAG 87 (201)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHHS--C--C----------------------CE--EEEEEEETTEEEEEEEECCTT
T ss_pred cccceEEEEECcCCCCHHHHHHHHhhC--C--CCCC----------C--CCCcceEE--EEEEEEECCEEEEEEEEECCC
Confidence 345689999999999999999999866 2 1000 0 00111222 122334444 6899999999
Q ss_pred CccchHHHHHHHHhcCeEEEEEcCCCccccchHH-HHHHhhh---hcCCcEEEEecccccc
Q 047363 84 HMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHA-VLRQSWI---EKLTPCLVLNKIDRLI 140 (876)
Q Consensus 84 h~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~-~l~~~~~---~~ip~ilviNKiD~~~ 140 (876)
+.+|......+++.+|++|+|+|+.+........ .+..+.. .++|++||+||+|+..
T Consensus 88 ~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~ 148 (201)
T 2hup_A 88 QERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSE 148 (201)
T ss_dssp CGGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred cHhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCcccc
Confidence 9999999999999999999999998765443332 2333332 4689999999999975
No 70
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.42 E-value=1.2e-12 Score=132.51 Aligned_cols=117 Identities=17% Similarity=0.175 Sum_probs=81.5
Q ss_pred CCCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEc--CeEEEEEcCCC
Q 047363 6 TRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYK--DYAINLIDSPG 83 (876)
Q Consensus 6 ~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~--~~~inlIDTPG 83 (876)
+.+..+|+|+|+.|+|||||+++|+.. . ... ...+ ..+.+. ...+.+. .+.+.||||||
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~--~-~~~-~~~~------------t~~~~~---~~~~~~~~~~~~~~l~Dt~G 71 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYD--E-FVE-DYEP------------TKADSY---RKKVVLDGEEVQIDILDTAG 71 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHS--C-CCT-TCCT------------TCCEEE---EEEEEETTEEEEEEEEECCC
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhC--C-CCC-CCCC------------ccceEE---EEEEEECCEEEEEEEEcCCC
Confidence 445689999999999999999999876 2 111 0000 011111 1223333 35899999999
Q ss_pred CccchHHHHHHHHhcCeEEEEEcCCCccccchHHH-HHHh----hhhcCCcEEEEeccccccc
Q 047363 84 HMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAV-LRQS----WIEKLTPCLVLNKIDRLIS 141 (876)
Q Consensus 84 h~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~-l~~~----~~~~ip~ilviNKiD~~~~ 141 (876)
+.+|.......++.+|++|+|+|+.+......... +..+ ...++|+++|+||+|+...
T Consensus 72 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 134 (206)
T 2bov_A 72 QEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 134 (206)
T ss_dssp TTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGG
T ss_pred hhhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCcccc
Confidence 99999999999999999999999987544333222 2222 2347899999999999753
No 71
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.42 E-value=1.1e-12 Score=130.22 Aligned_cols=117 Identities=17% Similarity=0.177 Sum_probs=80.3
Q ss_pred CCCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEc--CeEEEEEcCCC
Q 047363 6 TRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYK--DYAINLIDSPG 83 (876)
Q Consensus 6 ~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~--~~~inlIDTPG 83 (876)
+.+..+|+++|+.|+|||||+++|+.. . ........ .+.+. ...+.+. .+.+.||||||
T Consensus 15 ~~~~~ki~v~G~~~~GKSsli~~l~~~--~--~~~~~~~t------------~~~~~---~~~~~~~~~~~~~~l~Dt~G 75 (187)
T 2a9k_A 15 SLALHKVIMVGSGGVGKSALTLQFMYD--E--FVEDYEPT------------KADSY---RKKVVLDGEEVQIDILDTAG 75 (187)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHS--C--CCCSCCTT------------CCEEE---EEEEEETTEEEEEEEEECCC
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhhC--C--CCCcCCCc------------cceEE---EEEEEECCEEEEEEEEECCC
Confidence 345689999999999999999999876 2 11000000 01111 1122333 36899999999
Q ss_pred CccchHHHHHHHHhcCeEEEEEcCCCccccchHH-HHHH----hhhhcCCcEEEEeccccccc
Q 047363 84 HMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHA-VLRQ----SWIEKLTPCLVLNKIDRLIS 141 (876)
Q Consensus 84 h~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~-~l~~----~~~~~ip~ilviNKiD~~~~ 141 (876)
+.+|......+++.+|++|+|+|+.+........ .+.. ....++|+++|+||+|+...
T Consensus 76 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 138 (187)
T 2a9k_A 76 QEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 138 (187)
T ss_dssp TTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGG
T ss_pred CcccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 9999999999999999999999998754433322 2222 22347899999999999753
No 72
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.42 E-value=3e-13 Score=136.35 Aligned_cols=118 Identities=14% Similarity=0.131 Sum_probs=84.6
Q ss_pred CCCCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCC
Q 047363 5 DTRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGH 84 (876)
Q Consensus 5 ~~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh 84 (876)
.+...++|+|+|+.|+|||||+++|+.. .-.. .++. ...|. ....+.+..+.++||||||+
T Consensus 13 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~--~~~~----------~~~~---~t~~~----~~~~~~~~~~~~~i~Dt~G~ 73 (199)
T 4bas_A 13 QSKTKLQVVMCGLDNSGKTTIINQVKPA--QSSS----------KHIT---ATVGY----NVETFEKGRVAFTVFDMGGA 73 (199)
T ss_dssp ---CEEEEEEECCTTSCHHHHHHHHSCC--C--------------CCC---CCSSE----EEEEEEETTEEEEEEEECCS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhcC--CCcc----------cccc---cccce----eEEEEEeCCEEEEEEECCCC
Confidence 3456789999999999999999999754 1110 0000 01122 22345678899999999999
Q ss_pred ccchHHHHHHHHhcCeEEEEEcCCCccccchH-HHHHHhhhh-----------cCCcEEEEeccccccc
Q 047363 85 MDFCSEVSTAARLSDGALVLVDAVEGVHIQTH-AVLRQSWIE-----------KLTPCLVLNKIDRLIS 141 (876)
Q Consensus 85 ~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~-~~l~~~~~~-----------~ip~ilviNKiD~~~~ 141 (876)
.+|......+++.+|++|+|+|+.+....... ..+..+... ++|+++|+||+|+...
T Consensus 74 ~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 142 (199)
T 4bas_A 74 KKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGA 142 (199)
T ss_dssp GGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTC
T ss_pred HhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCC
Confidence 99999888999999999999999987654333 333333332 8999999999999754
No 73
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.41 E-value=7.2e-13 Score=129.09 Aligned_cols=109 Identities=16% Similarity=0.136 Sum_probs=80.5
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccchHH
Q 047363 11 NISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFCSE 90 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~~e 90 (876)
+|+++|+.|+|||||+++|+.. . .. +..+ ..| .....+.+.++.+++|||||+.+|...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~--~--~~----------~~~~---t~~----~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 60 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG--E--IV----------TTIP---TIG----FNVETVEYKNISFTVWDVGGQDKIRPL 60 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH--C--SS----------CCCC---CSS----CCEEEEECSSCEEEEEECCCCGGGHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC--C--cC----------cccC---cCc----eeEEEEEECCEEEEEEEcCCChhhHHH
Confidence 7999999999999999999876 2 10 0000 112 122345567899999999999999988
Q ss_pred HHHHHHhcCeEEEEEcCCCccccch-HHHHHHhhh----hcCCcEEEEecccccc
Q 047363 91 VSTAARLSDGALVLVDAVEGVHIQT-HAVLRQSWI----EKLTPCLVLNKIDRLI 140 (876)
Q Consensus 91 ~~~al~~aDgaIlVvDa~egv~~~t-~~~l~~~~~----~~ip~ilviNKiD~~~ 140 (876)
...+++.+|++|+|+|+.+..+... ...+..... .++|+++|+||+|+..
T Consensus 61 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 115 (164)
T 1r8s_A 61 WRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 115 (164)
T ss_dssp HHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcC
Confidence 8899999999999999987644332 222333322 3789999999999975
No 74
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.41 E-value=3.3e-13 Score=137.08 Aligned_cols=119 Identities=18% Similarity=0.180 Sum_probs=81.0
Q ss_pred CCCCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCC
Q 047363 5 DTRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGH 84 (876)
Q Consensus 5 ~~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh 84 (876)
......+|+|+|+.|+|||||+++|+.. ..... .. ...|.+.....+.+....+.+.||||||+
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~--~~~~~--~~------------~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 67 (207)
T 1vg8_A 4 RKKVLLKVIILGDSGVGKTSLMNQYVNK--KFSNQ--YK------------ATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67 (207)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHS--CCCSS--CC------------CCCSEEEEEEEEESSSCEEEEEEEEECSS
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHHcC--CCCCC--CC------------CcccceEEEEEEEECCEEEEEEEEeCCCc
Confidence 3456789999999999999999999876 21100 00 00122222222222222478999999999
Q ss_pred ccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHH-Hhhh-------hcCCcEEEEeccccc
Q 047363 85 MDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLR-QSWI-------EKLTPCLVLNKIDRL 139 (876)
Q Consensus 85 ~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~-~~~~-------~~ip~ilviNKiD~~ 139 (876)
.+|.......++.+|++|+|+|+.++........|. .+.. .++|+++|+||+|+.
T Consensus 68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 130 (207)
T 1vg8_A 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE 130 (207)
T ss_dssp GGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS
T ss_pred HHHHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc
Confidence 999888888899999999999998776544433332 2221 478999999999997
No 75
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.41 E-value=1.1e-12 Score=129.29 Aligned_cols=116 Identities=20% Similarity=0.145 Sum_probs=81.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcC--eEEEEEcCCCCc
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKD--YAINLIDSPGHM 85 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~--~~inlIDTPGh~ 85 (876)
+..+|+++|+.|+|||||+++|+.. .-.... ...+++......+.+.+ +.+.+|||||+.
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~--~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~ 74 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYD--SFDNTY----------------QATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 74 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS--CCCSSC----------------CCCCSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC--CCCCCC----------------CCceeeEEEEEEEEECCeEEEEEEEECCCcH
Confidence 3478999999999999999999876 211000 01112222222333443 689999999999
Q ss_pred cchHHHHHHHHhcCeEEEEEcCCCccccchHH-HHHHhh---hhcCCcEEEEeccccccc
Q 047363 86 DFCSEVSTAARLSDGALVLVDAVEGVHIQTHA-VLRQSW---IEKLTPCLVLNKIDRLIS 141 (876)
Q Consensus 86 dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~-~l~~~~---~~~ip~ilviNKiD~~~~ 141 (876)
+|.......++.+|++|+|+|+.+........ .+..+. ..++|+++|+||+|+...
T Consensus 75 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 134 (179)
T 2y8e_A 75 RFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK 134 (179)
T ss_dssp GGGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGG
T ss_pred HHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccccc
Confidence 99999999999999999999998765433322 223322 247899999999999753
No 76
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.41 E-value=2.1e-13 Score=140.73 Aligned_cols=122 Identities=13% Similarity=0.103 Sum_probs=88.7
Q ss_pred CCCCCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCC
Q 047363 4 SDTRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPG 83 (876)
Q Consensus 4 ~~~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPG 83 (876)
..+....+|+++|+.|+|||||+++|+........ ....|.+.....+.+....+.++||||||
T Consensus 10 ~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~----------------~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G 73 (221)
T 3gj0_A 10 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKY----------------VATLGVEVHPLVFHTNRGPIKFNVWDTAG 73 (221)
T ss_dssp TCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEE----------------ETTTTEEEEEEEEEETTEEEEEEEEEECS
T ss_pred CCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCC----------------CCccceeEEEEEEEECCEEEEEEEEeCCC
Confidence 34455678999999999999999996654111100 11224555554455544568899999999
Q ss_pred CccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHH-hhh--hcCCcEEEEeccccccc
Q 047363 84 HMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQ-SWI--EKLTPCLVLNKIDRLIS 141 (876)
Q Consensus 84 h~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~-~~~--~~ip~ilviNKiD~~~~ 141 (876)
+.+|.......++.+|++|+|+|+.+..+......|.. +.+ .++|+++|+||+|+...
T Consensus 74 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 134 (221)
T 3gj0_A 74 QEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 134 (221)
T ss_dssp GGGTSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSC
T ss_pred hHHHhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccccc
Confidence 99998888999999999999999998766555443433 222 27899999999999753
No 77
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.41 E-value=5.2e-13 Score=153.10 Aligned_cols=114 Identities=20% Similarity=0.270 Sum_probs=86.5
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccc-
Q 047363 9 IRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDF- 87 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF- 87 (876)
++.|+|+|.+|+|||||+++|++. ...+. +...|+|.......+.|.+..+.+|||||...+
T Consensus 1 ~~~v~ivG~pnvGKStL~nrl~~~--~~~~v---------------~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~ 63 (439)
T 1mky_A 1 MATVLIVGRPNVGKSTLFNKLVKK--KKAIV---------------EDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNP 63 (439)
T ss_dssp -CEEEEECCTTSSHHHHHHHHHC-------------------------------CCSEEEEEETTEEEEEEECTTTTSSG
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC--CCcee---------------cCCCCCccceeeEEEEECCeEEEEEECCCccccc
Confidence 368999999999999999999865 21111 112366666666778889999999999997752
Q ss_pred --------hHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEeccccc
Q 047363 88 --------CSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRL 139 (876)
Q Consensus 88 --------~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~ 139 (876)
...+..+++.||++|+|+|+..+.+...+.+.+.+.+.++|+++|+||+|+.
T Consensus 64 ~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~ 123 (439)
T 1mky_A 64 QDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENL 123 (439)
T ss_dssp GGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSH
T ss_pred cchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCc
Confidence 4457788999999999999999988777777777777899999999999975
No 78
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.41 E-value=1.2e-12 Score=130.32 Aligned_cols=117 Identities=15% Similarity=0.181 Sum_probs=80.3
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCcc
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMD 86 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~d 86 (876)
.+..+|+++|+.|+|||||+++|+.. .- .... .. ..+... ...+.+....+.+++|||||+.+
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~--~~-~~~~-~~------------t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~ 78 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQK--IF-VDDY-DP------------TIEDSY-LKHTEIDNQWAILDVLDTAGQEE 78 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHS--CC-CSCC-CT------------TCCEEE-EEEEEETTEEEEEEEEECCSCGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC--CC-CCCC-CC------------Ccccee-EEEEEeCCcEEEEEEEECCCchh
Confidence 34678999999999999999999865 21 1000 00 011111 11122222235677899999999
Q ss_pred chHHHHHHHHhcCeEEEEEcCCCccccchHH-----HHHHhhhhcCCcEEEEecccccc
Q 047363 87 FCSEVSTAARLSDGALVLVDAVEGVHIQTHA-----VLRQSWIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 87 F~~e~~~al~~aDgaIlVvDa~egv~~~t~~-----~l~~~~~~~ip~ilviNKiD~~~ 140 (876)
|......+++.+|++|+|+|+.+........ +.+.....++|+++|+||+|+..
T Consensus 79 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 137 (183)
T 3kkq_A 79 FSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 137 (183)
T ss_dssp GCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCST
T ss_pred hHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchh
Confidence 9999999999999999999999865433322 22333346789999999999865
No 79
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.41 E-value=7.4e-13 Score=133.71 Aligned_cols=116 Identities=17% Similarity=0.177 Sum_probs=81.8
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEc--CeEEEEEcCCCC
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYK--DYAINLIDSPGH 84 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~--~~~inlIDTPGh 84 (876)
....+|+|+|+.|+|||||+++|+.. . .... .....|.+... ..+.+. .+.+.||||||+
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~--~--~~~~------------~~~t~~~~~~~--~~~~~~~~~~~l~l~Dt~G~ 85 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDD--T--FCEA------------CKSTVGVDFKI--KTVELRGKKIRLQIWDTAGQ 85 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC------------------------CCTTEEEEE--EEEEETTEEEEEEEEEECCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC--C--CCcC------------CCCccceeEEE--EEEEECCeEEEEEEEeCCCc
Confidence 34578999999999999999999754 1 0000 00111233322 233344 368999999999
Q ss_pred ccchHHHHHHHHhcCeEEEEEcCCCccccchHHHH-HHhh---hhcCCcEEEEecccccc
Q 047363 85 MDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVL-RQSW---IEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 85 ~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l-~~~~---~~~ip~ilviNKiD~~~ 140 (876)
.+|.......++.+|++|+|+|+.+.........| ..+. ..++|+++|+||+|+..
T Consensus 86 ~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~ 145 (192)
T 2il1_A 86 ERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCET 145 (192)
T ss_dssp GGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred HHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 99999999999999999999999987665554333 2222 24789999999999965
No 80
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.40 E-value=7.1e-13 Score=133.43 Aligned_cols=120 Identities=16% Similarity=0.135 Sum_probs=83.5
Q ss_pred CCCCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCC
Q 047363 5 DTRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGH 84 (876)
Q Consensus 5 ~~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh 84 (876)
......+|+|+|+.|+|||||+++|+.. .-.... ....|.+.....+.+....+.++||||||+
T Consensus 17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~--~~~~~~--------------~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 80 (191)
T 2a5j_A 17 RGSYLFKYIIIGDTGVGKSCLLLQFTDK--RFQPVH--------------DLTIGVEFGARMVNIDGKQIKLQIWDTAGQ 80 (191)
T ss_dssp TTCEEEEEEEESSTTSSHHHHHHHHHHS--CCCC-------------------CCSSEEEEEEEETTEEEEEEEECCTTG
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcC--CCCCCC--------------CCcccceeEEEEEEECCEEEEEEEEECCCc
Confidence 3445688999999999999999999876 211000 001122332222333222468999999999
Q ss_pred ccchHHHHHHHHhcCeEEEEEcCCCccccchHH-HHHHhhh---hcCCcEEEEecccccc
Q 047363 85 MDFCSEVSTAARLSDGALVLVDAVEGVHIQTHA-VLRQSWI---EKLTPCLVLNKIDRLI 140 (876)
Q Consensus 85 ~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~-~l~~~~~---~~ip~ilviNKiD~~~ 140 (876)
.+|.......++.+|++|+|+|+.+....+... .+..+.. .++|+++|+||+|+..
T Consensus 81 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~ 140 (191)
T 2a5j_A 81 ESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLES 140 (191)
T ss_dssp GGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred hhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCC
Confidence 999888899999999999999998765544433 3333333 3789999999999964
No 81
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.40 E-value=7.1e-13 Score=132.94 Aligned_cols=117 Identities=18% Similarity=0.180 Sum_probs=83.7
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccc
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDF 87 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF 87 (876)
+..+|+++|+.|+|||||+++|+........ ....|.+.....+.+....+.+.||||||+.+|
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~----------------~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 77 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPEL----------------AATIGVDFKVKTISVDGNKAKLAIWDTAGQERF 77 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTC----------------CCCCSEEEEEEEEEETTEEEEEEEEEECSSGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCccC----------------CCccceEEEEEEEEECCeEEEEEEEeCCCchhh
Confidence 3578999999999999999999876111000 011133333333344334578999999999999
Q ss_pred hHHHHHHHHhcCeEEEEEcCCCccccchHHHH-HHhhh----hcCCcEEEEecccccc
Q 047363 88 CSEVSTAARLSDGALVLVDAVEGVHIQTHAVL-RQSWI----EKLTPCLVLNKIDRLI 140 (876)
Q Consensus 88 ~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l-~~~~~----~~ip~ilviNKiD~~~ 140 (876)
......+++.+|++|+|+|+.+.........| ..+.. .++|+++|+||+|+..
T Consensus 78 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~ 135 (195)
T 1x3s_A 78 RTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN 135 (195)
T ss_dssp CCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSS
T ss_pred hhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcc
Confidence 98999999999999999999876554443333 33332 4689999999999953
No 82
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.40 E-value=1e-12 Score=130.04 Aligned_cols=120 Identities=16% Similarity=0.135 Sum_probs=75.7
Q ss_pred CCCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCc
Q 047363 6 TRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHM 85 (876)
Q Consensus 6 ~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~ 85 (876)
.++..+|+++|+.|+|||||+++|+.. .-..... ....+.+.....+.+....+.+.+|||||+.
T Consensus 7 ~~~~~~i~v~G~~~~GKssli~~l~~~--~~~~~~~-------------~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~ 71 (180)
T 2g6b_A 7 YDVAFKVMLVGDSGVGKTCLLVRFKDG--AFLAGTF-------------ISTVGIDFRNKVLDVDGVKVKLQMWDTAGQE 71 (180)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHS--CCCCCCC-------------CCCCSCEEEEEEEEETTEEEEEEEEECCCC-
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHhC--CCCCCCc-------------CCceeeEEEEEEEEECCEEEEEEEEeCCCcH
Confidence 345679999999999999999999876 2110000 0011222222222222223589999999999
Q ss_pred cchHHHHHHHHhcCeEEEEEcCCCccccchHH-HHHHhhh---hcCCcEEEEecccccc
Q 047363 86 DFCSEVSTAARLSDGALVLVDAVEGVHIQTHA-VLRQSWI---EKLTPCLVLNKIDRLI 140 (876)
Q Consensus 86 dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~-~l~~~~~---~~ip~ilviNKiD~~~ 140 (876)
+|......+++.+|++|+|+|+.+........ .+..+.. .++|+++|+||+|+..
T Consensus 72 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 130 (180)
T 2g6b_A 72 RFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAH 130 (180)
T ss_dssp -------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTS
T ss_pred HHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCc
Confidence 99988899999999999999998765544322 2233332 5789999999999975
No 83
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.40 E-value=5e-13 Score=134.57 Aligned_cols=119 Identities=17% Similarity=0.126 Sum_probs=86.8
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCcc
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMD 86 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~d 86 (876)
+...+|+|+|+.|+|||||+++|+......... ...|++.....+.+....+.+.||||||+.+
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~----------------~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 84 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFV----------------STVGIDFKVKTVYRHEKRVKLQIWDTAGQER 84 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEE----------------EEETTTEEEEEEEETTTTEEEEEECHHHHHH
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccC----------------CCeeeEEEEEEEEECCEEEEEEEEeCCChHH
Confidence 456889999999999999999999872111100 0113344444444445678999999999999
Q ss_pred chHHHHHHHHhcCeEEEEEcCCCccccchHH-HHHHhhh---hcCCcEEEEeccccccc
Q 047363 87 FCSEVSTAARLSDGALVLVDAVEGVHIQTHA-VLRQSWI---EKLTPCLVLNKIDRLIS 141 (876)
Q Consensus 87 F~~e~~~al~~aDgaIlVvDa~egv~~~t~~-~l~~~~~---~~ip~ilviNKiD~~~~ 141 (876)
|.......++.+|++|+|+|+.+........ .+..+.. .++|+++|+||+|+...
T Consensus 85 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 143 (191)
T 3dz8_A 85 YRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEE 143 (191)
T ss_dssp CHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred HHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccc
Confidence 9999999999999999999998765443333 3333333 47899999999998653
No 84
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.40 E-value=7.8e-13 Score=132.44 Aligned_cols=119 Identities=15% Similarity=0.130 Sum_probs=84.5
Q ss_pred CCCCCCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCC
Q 047363 3 DSDTRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSP 82 (876)
Q Consensus 3 ~~~~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTP 82 (876)
+.......+|+++|+.|+|||||+++|++. .-.... ...|.|... .+...+..+.+||||
T Consensus 17 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~--~~~~~~---------------~~~~~t~~~---~~~~~~~~~~i~Dt~ 76 (195)
T 3pqc_A 17 DYPPPLKGEVAFVGRSNVGKSSLLNALFNR--KIAFVS---------------KTPGKTRSI---NFYLVNSKYYFVDLP 76 (195)
T ss_dssp CCCCCTTCEEEEEEBTTSSHHHHHHHHHTS--CCSCCC---------------SSCCCCCCE---EEEEETTTEEEEECC
T ss_pred hCCCCCCeEEEEECCCCCCHHHHHHHHHcC--cccccc---------------CCCCCccCe---EEEEECCcEEEEECC
Confidence 344566789999999999999999999866 211000 011222221 122235678999999
Q ss_pred C----------CccchHHHHHHHHhc---CeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEeccccccc
Q 047363 83 G----------HMDFCSEVSTAARLS---DGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLIS 141 (876)
Q Consensus 83 G----------h~dF~~e~~~al~~a---DgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~~ 141 (876)
| +..|.......++.+ |++++|+|+..+.......+++++...++|+++|+||+|+...
T Consensus 77 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~ 148 (195)
T 3pqc_A 77 GYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKVKM 148 (195)
T ss_dssp CBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCG
T ss_pred CCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhcCCh
Confidence 9 444555455555555 9999999999887777777788888889999999999999753
No 85
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.40 E-value=1.2e-12 Score=131.39 Aligned_cols=64 Identities=23% Similarity=0.239 Sum_probs=52.4
Q ss_pred eEEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCccccchHH-HHHHhh-hhcCCcEEEEeccc
Q 047363 74 YAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHA-VLRQSW-IEKLTPCLVLNKID 137 (876)
Q Consensus 74 ~~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~-~l~~~~-~~~ip~ilviNKiD 137 (876)
..+.||||||+.+|.......++.+|++|+|+|+.++....... .+..+. ..++|+++|+||+|
T Consensus 93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D 158 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKID 158 (208)
T ss_dssp EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTT
T ss_pred eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCC
Confidence 78999999999999999999999999999999999876544433 233333 24589999999999
No 86
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.40 E-value=1e-12 Score=131.83 Aligned_cols=119 Identities=18% Similarity=0.194 Sum_probs=81.3
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCcc
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMD 86 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~d 86 (876)
.+..+|+++|+.|+|||||+++|+.. .-... . ....|.+.....+.+....+.++||||||+.+
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~--~~~~~--~------------~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 81 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAG--RFPDR--T------------EATIGVDFRERAVDIDGERIKIQLWDTAGQER 81 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS--SCCSS--C------------CCCCSCCEEEEEEEETTEEEEEEEEECCCSHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcC--CCCCC--C------------CCCcceEEEEEEEEECCEEEEEEEEECCCchh
Confidence 45689999999999999999999876 21100 0 00112222222222222246899999999999
Q ss_pred ch-HHHHHHHHhcCeEEEEEcCCCccccchHHHH-----HHhhhhcCCcEEEEeccccccc
Q 047363 87 FC-SEVSTAARLSDGALVLVDAVEGVHIQTHAVL-----RQSWIEKLTPCLVLNKIDRLIS 141 (876)
Q Consensus 87 F~-~e~~~al~~aDgaIlVvDa~egv~~~t~~~l-----~~~~~~~ip~ilviNKiD~~~~ 141 (876)
|. .....+++.+|++|+|+|+.+..+.....-| +.+...++|+++|+||+|+...
T Consensus 82 ~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 142 (189)
T 1z06_A 82 FRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSA 142 (189)
T ss_dssp HHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGG
T ss_pred hhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 98 7788889999999999999876544332222 2222457899999999999653
No 87
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.40 E-value=4.3e-13 Score=133.49 Aligned_cols=116 Identities=12% Similarity=0.085 Sum_probs=60.8
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcC--eEEEEEcCCCC
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKD--YAINLIDSPGH 84 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~--~~inlIDTPGh 84 (876)
+...+|+++|+.|+|||||+++|+.. .- ... ....++.......+.+.+ +.++||||||+
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~--~~------------~~~----~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 67 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSED--AF------------NST----FISTIGIDFKIRTIELDGKRIKLQIWDTAGQ 67 (183)
T ss_dssp SEEEEEEEECCCCC------------------------------C----HHHHHCEEEEEEEEEETTEEEEEEEEEC---
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC--CC------------CCC----CCCcccceeEEEEEEECCEEEEEEEEcCCCC
Confidence 45789999999999999999999755 10 000 011222222223344444 78999999999
Q ss_pred ccchHHHHHHHHhcCeEEEEEcCCCccccchH-HHHHHhhh---hcCCcEEEEecccccc
Q 047363 85 MDFCSEVSTAARLSDGALVLVDAVEGVHIQTH-AVLRQSWI---EKLTPCLVLNKIDRLI 140 (876)
Q Consensus 85 ~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~-~~l~~~~~---~~ip~ilviNKiD~~~ 140 (876)
.+|.......++.+|++|+|+|+.+....... ..+..+.. .++|+++|+||+|+..
T Consensus 68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 127 (183)
T 2fu5_C 68 ERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVND 127 (183)
T ss_dssp ------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCS
T ss_pred hhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCc
Confidence 99988888889999999999999876543332 23333333 3689999999999964
No 88
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.40 E-value=6.9e-13 Score=129.97 Aligned_cols=114 Identities=19% Similarity=0.128 Sum_probs=83.4
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCcc
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMD 86 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~d 86 (876)
.+..+|+++|+.|+|||||+++|+.. . ... . ..|+......+.+.+..+.+|||||+.+
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~--~--~~~----------~-------~~t~~~~~~~~~~~~~~~~~~Dt~G~~~ 63 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVG--E--VVT----------T-------IPTIGFNVETVTYKNLKFQVWDLGGLTS 63 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHS--S--CCC----------C-------CCCSSEEEEEEEETTEEEEEEEECCCGG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC--C--CCC----------c-------CCcCccceEEEEECCEEEEEEECCCChh
Confidence 34688999999999999999999865 2 110 0 0011122235566789999999999999
Q ss_pred chHHHHHHHHhcCeEEEEEcCCCccccch-HHHHHHhhh----hcCCcEEEEeccccccc
Q 047363 87 FCSEVSTAARLSDGALVLVDAVEGVHIQT-HAVLRQSWI----EKLTPCLVLNKIDRLIS 141 (876)
Q Consensus 87 F~~e~~~al~~aDgaIlVvDa~egv~~~t-~~~l~~~~~----~~ip~ilviNKiD~~~~ 141 (876)
|......+++.+|++|+|+|+.+...... ...+..... .++|+++|+||+|+...
T Consensus 64 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 123 (171)
T 1upt_A 64 IRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQA 123 (171)
T ss_dssp GGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred hhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCC
Confidence 98888889999999999999987644332 222332222 57899999999999753
No 89
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.39 E-value=5.5e-13 Score=132.44 Aligned_cols=116 Identities=19% Similarity=0.230 Sum_probs=77.6
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccc
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDF 87 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF 87 (876)
+..+|+++|+.|+|||||+++|+.. . .... ... ..+.+. ...+.+....+.++||||||+.+|
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~--~-~~~~-~~~------------t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~ 67 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEG--Q-FVDS-YDP------------TIENTF-TKLITVNGQEYHLQLVDTAGQDEY 67 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS--S-CCSC-CCT------------TCCEEE-EEEEEETTEEEEEEEEECCCCCTT
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcC--C-CCCC-CCC------------CccccE-EEEEEECCEEEEEEEEeCCCchhh
Confidence 5689999999999999999999865 2 1110 000 112222 112222222367899999999999
Q ss_pred hHHHHHHHHhcCeEEEEEcCCCccccchH-----HHHHHhhhhcCCcEEEEecccccc
Q 047363 88 CSEVSTAARLSDGALVLVDAVEGVHIQTH-----AVLRQSWIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 88 ~~e~~~al~~aDgaIlVvDa~egv~~~t~-----~~l~~~~~~~ip~ilviNKiD~~~ 140 (876)
.......++.+|++|+|+|+.+....... .+++.....++|+++|+||+|+..
T Consensus 68 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 125 (181)
T 3t5g_A 68 SIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHM 125 (181)
T ss_dssp CCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTT
T ss_pred hHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchh
Confidence 87778888999999999999875433332 223333345889999999999864
No 90
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.39 E-value=1.3e-12 Score=127.29 Aligned_cols=116 Identities=14% Similarity=0.123 Sum_probs=79.4
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccch
Q 047363 9 IRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFC 88 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~ 88 (876)
..+|+++|+.|+|||||+++|+.. .- ...... ..+... ...+.+....+.+.+|||||+.+|.
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~--~~--~~~~~~------------t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~ 65 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQG--IF--VEKYDP------------TIEDSY-RKQVEVDCQQCMLEILDTAGTEQFT 65 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC--CC--CCSCCC------------CSEEEE-EEEEESSSCEEEEEEEEECSSCSST
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC--CC--CCCCCC------------CccceE-EEEEEECCEEEEEEEEECCChHHHH
Confidence 368999999999999999999875 21 100000 001111 1112222235689999999999999
Q ss_pred HHHHHHHHhcCeEEEEEcCCCccccchH-HHHHHhh----hhcCCcEEEEeccccccc
Q 047363 89 SEVSTAARLSDGALVLVDAVEGVHIQTH-AVLRQSW----IEKLTPCLVLNKIDRLIS 141 (876)
Q Consensus 89 ~e~~~al~~aDgaIlVvDa~egv~~~t~-~~l~~~~----~~~ip~ilviNKiD~~~~ 141 (876)
......++.+|++++|+|+.+....... ..+..+. ..++|+++|+||+|+...
T Consensus 66 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 123 (167)
T 1c1y_A 66 AMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDE 123 (167)
T ss_dssp THHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGG
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECcccccc
Confidence 9999999999999999999875443332 2222222 347899999999999753
No 91
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.39 E-value=6.6e-13 Score=129.75 Aligned_cols=114 Identities=17% Similarity=0.170 Sum_probs=79.4
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEc--CeEEEEEcCCCCc
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYK--DYAINLIDSPGHM 85 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~--~~~inlIDTPGh~ 85 (876)
...+|+++|+.|+|||||+++|++. .- ... .....+.+.. ...+.+. .+.+.||||||+.
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~--~~--~~~------------~~~~~~~~~~--~~~~~~~~~~~~~~l~D~~G~~ 63 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVED--KF--NPS------------FITTIGIDFK--IKTVDINGKKVKLQIWDTAGQE 63 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHC--CC--CC-------------------CCEE--EEEEESSSCEEEEEEECCTTGG
T ss_pred CceEEEEECcCCCCHHHHHHHHHhC--CC--CCC------------CCCccceeEE--EEEEEECCEEEEEEEEeCCCCh
Confidence 4578999999999999999999876 21 000 0001122222 2233333 3689999999999
Q ss_pred cchHHHHHHHHhcCeEEEEEcCCCccccchHH-HHHHhhh---hcCCcEEEEeccccc
Q 047363 86 DFCSEVSTAARLSDGALVLVDAVEGVHIQTHA-VLRQSWI---EKLTPCLVLNKIDRL 139 (876)
Q Consensus 86 dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~-~l~~~~~---~~ip~ilviNKiD~~ 139 (876)
+|...+...++.+|++|+|+|+.+........ .+..+.. .++|+++|+||+|+.
T Consensus 64 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 121 (170)
T 1g16_A 64 RFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME 121 (170)
T ss_dssp GTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred hhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCC
Confidence 99888899999999999999998765543332 3333332 378999999999994
No 92
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.39 E-value=3.1e-12 Score=131.40 Aligned_cols=119 Identities=19% Similarity=0.253 Sum_probs=77.7
Q ss_pred CCCCCCCCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEc
Q 047363 1 MGDSDTRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLID 80 (876)
Q Consensus 1 m~~~~~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlID 80 (876)
|......+..+|+++|+.|+|||||+++|+.......+.. . ...++ ..+....+++||
T Consensus 4 ~~~~~~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~----------~-----~~~~~-------~~~~~~~~~l~D 61 (218)
T 1nrj_B 4 MGIKQKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVS----------Q-----EPLSA-------ADYDGSGVTLVD 61 (218)
T ss_dssp ------CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCC----------S-----SCEEE-------TTGGGSSCEEEE
T ss_pred CCCCccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeee----------c-----CceEE-------EEeeCceEEEEE
Confidence 3334455678999999999999999999987621110000 0 00011 111457899999
Q ss_pred CCCCccchHHHHHHHHh----cCeEEEEEcCC-Cccccc-hHHHHHHhh-------hhcCCcEEEEeccccccc
Q 047363 81 SPGHMDFCSEVSTAARL----SDGALVLVDAV-EGVHIQ-THAVLRQSW-------IEKLTPCLVLNKIDRLIS 141 (876)
Q Consensus 81 TPGh~dF~~e~~~al~~----aDgaIlVvDa~-egv~~~-t~~~l~~~~-------~~~ip~ilviNKiD~~~~ 141 (876)
|||+.+|.......++. +|++|+|+|+. ...... ....+.... ..++|+++|+||+|+...
T Consensus 62 t~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 135 (218)
T 1nrj_B 62 FPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA 135 (218)
T ss_dssp CCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred CCCcHHHHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhccc
Confidence 99999998888888887 89999999998 322221 112222221 147899999999999754
No 93
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.39 E-value=1.4e-12 Score=127.44 Aligned_cols=118 Identities=13% Similarity=0.117 Sum_probs=83.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccc
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDF 87 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF 87 (876)
+..+|+++|+.|+|||||+++|+........ ....|.+.....+.+....+.+.+|||||+.+|
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~ 68 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNI----------------NPTIGASFMTKTVQYQNELHKFLIWDTAGLERF 68 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCTTC----------------CCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCC----------------CCceeEEEEEEEEEECCeEEEEEEEcCCCchhh
Confidence 4578999999999999999999876111000 011233433333333333478999999999999
Q ss_pred hHHHHHHHHhcCeEEEEEcCCCccccchHH-HHHHhhh---hcCCcEEEEeccccccc
Q 047363 88 CSEVSTAARLSDGALVLVDAVEGVHIQTHA-VLRQSWI---EKLTPCLVLNKIDRLIS 141 (876)
Q Consensus 88 ~~e~~~al~~aDgaIlVvDa~egv~~~t~~-~l~~~~~---~~ip~ilviNKiD~~~~ 141 (876)
.......++.+|++|+|+|+.+........ .+..+.. .++|+++|+||+|+...
T Consensus 69 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~ 126 (170)
T 1z0j_A 69 RALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 126 (170)
T ss_dssp GGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGG
T ss_pred hcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccc
Confidence 999999999999999999998766544433 3333332 36788999999999753
No 94
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.39 E-value=7.1e-13 Score=133.83 Aligned_cols=112 Identities=22% Similarity=0.206 Sum_probs=81.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccc
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDF 87 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF 87 (876)
+..+|+++|++|+|||||+++|... . ... + ..|+......+.++++.++++||||+.+|
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~--~--~~~-------~----------~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~ 80 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKND--R--LAT-------L----------QPTWHPTSEELAIGNIKFTTFDLGGHIQA 80 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHS--C--CCC-------C----------CCCCSCEEEEEEETTEEEEEEECCCSGGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC--C--CCc-------c----------ccCCCCCeEEEEECCEEEEEEECCCCHHH
Confidence 3468999999999999999999875 2 110 0 01122223456677899999999999999
Q ss_pred hHHHHHHHHhcCeEEEEEcCCCccccchHH-HHHHhh----hhcCCcEEEEecccccc
Q 047363 88 CSEVSTAARLSDGALVLVDAVEGVHIQTHA-VLRQSW----IEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 88 ~~e~~~al~~aDgaIlVvDa~egv~~~t~~-~l~~~~----~~~ip~ilviNKiD~~~ 140 (876)
......+++.+|++|+|+|+.++.+..... .+.... ..++|+++|+||+|+..
T Consensus 81 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 138 (190)
T 1m2o_B 81 RRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN 138 (190)
T ss_dssp TTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT
T ss_pred HHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC
Confidence 887788889999999999999875443322 222222 35789999999999975
No 95
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.39 E-value=1.2e-12 Score=131.44 Aligned_cols=113 Identities=18% Similarity=0.130 Sum_probs=82.9
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccc
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDF 87 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF 87 (876)
+..+|+|+|+.|+|||||+++|+.. .-. .. . ..|+......+.+.++.++||||||+.+|
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~--~~~--~~---------~-------~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~ 80 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASG--QFN--ED---------M-------IPTVGFNMRKITKGNVTIKLWDIGGQPRF 80 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS--CCC--CS---------C-------CCCCSEEEEEEEETTEEEEEEEECCSHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHHcC--CCC--Cc---------c-------CCCCceeEEEEEeCCEEEEEEECCCCHhH
Confidence 4578999999999999999999876 210 00 0 01111222345677899999999999999
Q ss_pred hHHHHHHHHhcCeEEEEEcCCCccccchH-HHHHHhh----hhcCCcEEEEecccccc
Q 047363 88 CSEVSTAARLSDGALVLVDAVEGVHIQTH-AVLRQSW----IEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 88 ~~e~~~al~~aDgaIlVvDa~egv~~~t~-~~l~~~~----~~~ip~ilviNKiD~~~ 140 (876)
......+++.+|++|+|+|+.+....... ..+..+. ..++|+++|+||+|+..
T Consensus 81 ~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 138 (188)
T 1zd9_A 81 RSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPG 138 (188)
T ss_dssp HTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT
T ss_pred HHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCcc
Confidence 99999999999999999999875443322 2233332 25789999999999975
No 96
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.39 E-value=8.8e-13 Score=134.26 Aligned_cols=117 Identities=15% Similarity=0.137 Sum_probs=82.8
Q ss_pred CCCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEc--CeEEEEEcCCC
Q 047363 6 TRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYK--DYAINLIDSPG 83 (876)
Q Consensus 6 ~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~--~~~inlIDTPG 83 (876)
.++..+|+|+|+.|+|||||+++|+.. .-... + ....|.+... ..+.+. .+.+.||||||
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~--~~~~~-----------~---~~t~~~~~~~--~~~~~~~~~~~~~l~Dt~G 66 (206)
T 2bcg_Y 5 YDYLFKLLLIGNSGVGKSCLLLRFSDD--TYTND-----------Y---ISTIGVDFKI--KTVELDGKTVKLQIWDTAG 66 (206)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHC--CCCTT-----------C---CCSSCCCEEE--EEEEETTEEEEEEEECCTT
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcC--CCCCC-----------C---CCcccceeEE--EEEEECCEEEEEEEEeCCC
Confidence 456789999999999999999999876 21000 0 0011222222 233333 36899999999
Q ss_pred CccchHHHHHHHHhcCeEEEEEcCCCccccchHHHH-HHhhh---hcCCcEEEEecccccc
Q 047363 84 HMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVL-RQSWI---EKLTPCLVLNKIDRLI 140 (876)
Q Consensus 84 h~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l-~~~~~---~~ip~ilviNKiD~~~ 140 (876)
+.+|......+++.+|++|+|+|+.+.........| ..+.. .++|+++|+||+|+..
T Consensus 67 ~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 127 (206)
T 2bcg_Y 67 QERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKD 127 (206)
T ss_dssp TTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTT
T ss_pred hHHHHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence 999988888899999999999999876654443322 33322 4689999999999975
No 97
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.38 E-value=1.3e-12 Score=133.27 Aligned_cols=115 Identities=16% Similarity=0.126 Sum_probs=80.7
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcC--eEEEEEcCCCC
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKD--YAINLIDSPGH 84 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~--~~inlIDTPGh 84 (876)
....+|+|+|++|+|||||+++|+.. .-... ....++.......+.+.+ +.+.||||||+
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~--~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 79 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVED--KFNPS----------------FITTIGIDFKIKTVDINGKKVKLQLWDTAGQ 79 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHC--CCCCS----------------SSCCCSCCEEEEEEEETTEEEEEEEECCTTG
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhC--CCCcc----------------cCCcccceEEEEEEEECCEEEEEEEEeCCCc
Confidence 45689999999999999999999865 21000 001111122223344454 68999999999
Q ss_pred ccchHHHHHHHHhcCeEEEEEcCCCccccchHH-HHHHhhh---hcCCcEEEEeccccc
Q 047363 85 MDFCSEVSTAARLSDGALVLVDAVEGVHIQTHA-VLRQSWI---EKLTPCLVLNKIDRL 139 (876)
Q Consensus 85 ~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~-~l~~~~~---~~ip~ilviNKiD~~ 139 (876)
.+|...+..+++.+|++|+|+|+.+........ .+..+.. .++|+++|+||+|+.
T Consensus 80 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 138 (213)
T 3cph_A 80 ERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME 138 (213)
T ss_dssp GGGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCS
T ss_pred HHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 999888899999999999999998765443332 2333332 378999999999994
No 98
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.38 E-value=1e-12 Score=129.23 Aligned_cols=117 Identities=12% Similarity=0.080 Sum_probs=72.9
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCcc-
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMD- 86 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~d- 86 (876)
...+|+++|++|+|||||+++|++. .-... ....|.+.....+.+....+.+.+|||||+..
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~--~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~ 65 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGK--QERDL---------------HEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKL 65 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC----------------------CCCSSSSEEEEEEEETTEEEEEEEECCC-----
T ss_pred eEEEEEEECCCCccHHHHHHHHhcC--CCccc---------------cCccccceeEEEEEECCEEEEEEEEecCCCCcc
Confidence 4578999999999999999999754 11000 00123333333333322345789999999988
Q ss_pred -chHHHHHHHHhcCeEEEEEcCCCccccchH-HHHHHhhh----hcCCcEEEEeccccccc
Q 047363 87 -FCSEVSTAARLSDGALVLVDAVEGVHIQTH-AVLRQSWI----EKLTPCLVLNKIDRLIS 141 (876)
Q Consensus 87 -F~~e~~~al~~aDgaIlVvDa~egv~~~t~-~~l~~~~~----~~ip~ilviNKiD~~~~ 141 (876)
+.......++.+|++|+|+|+.+....... ..+..+.. .++|+++|+||+|+...
T Consensus 66 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~ 126 (175)
T 2nzj_A 66 DKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARC 126 (175)
T ss_dssp --CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTT
T ss_pred chhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccc
Confidence 445556677889999999999875543332 23333333 37899999999999753
No 99
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.38 E-value=1.9e-12 Score=126.52 Aligned_cols=116 Identities=14% Similarity=0.174 Sum_probs=79.5
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccch
Q 047363 9 IRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFC 88 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~ 88 (876)
-.+|+++|+.|+|||||+++|+.. . .... +.. ..+.+.. ..+......+.+.+|||||+.+|.
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~--~--~~~~------~~~------t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~ 65 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKG--T--FRES------YIP------TVEDTYR-QVISCDKSICTLQITDTTGSHQFP 65 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTC--C--CCSS------CCC------CSCEEEE-EEEEETTEEEEEEEEECCSCSSCH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC--C--CCCC------CCC------CccccEE-EEEEECCEEEEEEEEECCCchhhH
Confidence 368999999999999999999864 1 1100 000 0011111 112222234679999999999999
Q ss_pred HHHHHHHHhcCeEEEEEcCCCccccch-HHHHHHhhh-----hcCCcEEEEeccccccc
Q 047363 89 SEVSTAARLSDGALVLVDAVEGVHIQT-HAVLRQSWI-----EKLTPCLVLNKIDRLIS 141 (876)
Q Consensus 89 ~e~~~al~~aDgaIlVvDa~egv~~~t-~~~l~~~~~-----~~ip~ilviNKiD~~~~ 141 (876)
.....+++.+|++|+|+|+.+...... ...+..+.+ .++|+++|+||+|+...
T Consensus 66 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~ 124 (172)
T 2erx_A 66 AMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPS 124 (172)
T ss_dssp HHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGG
T ss_pred HHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccc
Confidence 999999999999999999987544332 334444433 36899999999999753
No 100
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.38 E-value=1.2e-12 Score=130.20 Aligned_cols=113 Identities=19% Similarity=0.225 Sum_probs=79.1
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccchH
Q 047363 10 RNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFCS 89 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~~ 89 (876)
..|+|+|++|+|||||+++|.+. ....... ..+.|.......+.+.+..+.+|||||+.++..
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~--~~~~~~~---------------~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~ 67 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR--EAAIVTD---------------IAGTTRDVLREHIHIDGMPLHIIDTAGLREASD 67 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS--CCSCCCS---------------STTCCCSCEEEEEEETTEEEEEEECCCCSCCSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC--CcceeeC---------------CCCceeceeeEEEEECCeEEEEEECCCcccchh
Confidence 57999999999999999999765 2111100 112233323344556778899999999976532
Q ss_pred H--------HHHHHHhcCeEEEEEcCCCccccchHHHHHHhhh---hcCCcEEEEeccccc
Q 047363 90 E--------VSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWI---EKLTPCLVLNKIDRL 139 (876)
Q Consensus 90 e--------~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~---~~ip~ilviNKiD~~ 139 (876)
. ...+++.+|++|+|+|+.+........++..+.. .++|+++|+||+|+.
T Consensus 68 ~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 128 (172)
T 2gj8_A 68 EVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADIT 128 (172)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHH
T ss_pred HHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCC
Confidence 1 3356899999999999988776655545444433 368999999999985
No 101
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.38 E-value=9.8e-13 Score=141.42 Aligned_cols=112 Identities=19% Similarity=0.195 Sum_probs=84.5
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccch
Q 047363 9 IRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFC 88 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~ 88 (876)
..+|+++|++|+|||||+++|++. ... .. ...|+|+......+.+.+..++||||||+.+|.
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~--~~~----------v~------~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~ 64 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGS--RQR----------VG------NWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLT 64 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTT--CEE----------EE------ECTTSSSEEEEEEEECSSCEEEEEECCCCSCSC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCC--Ccc----------cC------CCCCeeEEEEEEEEEeCCCceEEEECcCCCccc
Confidence 368999999999999999999765 211 11 123667666667777888999999999999886
Q ss_pred H---------HHHH---HHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccc
Q 047363 89 S---------EVST---AARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 89 ~---------e~~~---al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~ 140 (876)
. .+.+ ..+.+|++|+|+|+... .....++.++.+.++|+++|+||+|+..
T Consensus 65 ~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~--~~~~~~~~~l~~~~~p~ivv~NK~Dl~~ 126 (274)
T 3i8s_A 65 TISSQTSLDEQIACHYILSGDADLLINVVDASNL--ERNLYLTLQLLELGIPCIVALNMLDIAE 126 (274)
T ss_dssp C----CCHHHHHHHHHHHHTCCSEEEEEEEGGGH--HHHHHHHHHHHHHTCCEEEEEECHHHHH
T ss_pred cccccCCHHHHHHHHHHhhcCCCEEEEEecCCCh--HHHHHHHHHHHhcCCCEEEEEECccchh
Confidence 2 1122 23689999999999862 2344556677788999999999999864
No 102
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.37 E-value=3e-12 Score=123.93 Aligned_cols=114 Identities=15% Similarity=0.192 Sum_probs=77.7
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccchH
Q 047363 10 RNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFCS 89 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~~ 89 (876)
.+|+++|+.|+|||||+++|+.. ... ....... +... ...+.+....+.+.+|||||+.+|..
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~--~~~--~~~~~~~------------~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~ 66 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQN--HFV--DECDPTI------------EDSY-RKQVVIDGETCLLDILDTAGQEEYSA 66 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS--SCC--SCCCTTC------------CEEE-EEEEEETTEEEEEEEEECCCCSSCCH
T ss_pred eEEEEECCCCCCHHHHHHHHHhC--cCc--cccCCcc------------ceEE-EEEEEECCEEEEEEEEECCCchhhhH
Confidence 57999999999999999999876 211 0000000 1111 11112222246789999999999999
Q ss_pred HHHHHHHhcCeEEEEEcCCCccccch-HHHHHHhhh----hcCCcEEEEecccccc
Q 047363 90 EVSTAARLSDGALVLVDAVEGVHIQT-HAVLRQSWI----EKLTPCLVLNKIDRLI 140 (876)
Q Consensus 90 e~~~al~~aDgaIlVvDa~egv~~~t-~~~l~~~~~----~~ip~ilviNKiD~~~ 140 (876)
.....++.+|++++|+|+.+...... ...+..+.. .++|+++|+||+|+..
T Consensus 67 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~ 122 (166)
T 2ce2_X 67 MRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA 122 (166)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC
T ss_pred HHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh
Confidence 99999999999999999986544332 222333322 3789999999999875
No 103
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.37 E-value=2.2e-12 Score=131.95 Aligned_cols=116 Identities=18% Similarity=0.196 Sum_probs=81.8
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcC--eEEEEEcCCCC
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKD--YAINLIDSPGH 84 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~--~~inlIDTPGh 84 (876)
++..+|+++|+.|+|||||+++|+.. . ..... + ...|.+... ..+.+++ +.+.||||||+
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~--~--~~~~~-~-----------~t~~~~~~~--~~~~~~~~~~~l~l~Dt~G~ 85 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQG--L--FPPGQ-G-----------ATIGVDFMI--KTVEINGEKVKLQIWDTAGQ 85 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHS--S--CCTTC-C-----------CCCSEEEEE--EEEEETTEEEEEEEEEECCS
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhC--C--CCCCC-C-----------CccceeEEE--EEEEECCEEEEEEEEECCCc
Confidence 45689999999999999999999876 2 11000 0 011222222 2333443 68999999999
Q ss_pred ccchHHHHHHHHhcCeEEEEEcCCCccccchHHHH-HHhh---hhcCCcEEEEecccccc
Q 047363 85 MDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVL-RQSW---IEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 85 ~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l-~~~~---~~~ip~ilviNKiD~~~ 140 (876)
.+|......+++.+|++|+|+|+.+.........| ..+. ..++|+++|+||+|+..
T Consensus 86 ~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~ 145 (201)
T 2ew1_A 86 ERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAE 145 (201)
T ss_dssp GGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred HHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence 99998889999999999999999876554433322 2222 24689999999999974
No 104
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.37 E-value=1.2e-12 Score=128.18 Aligned_cols=119 Identities=18% Similarity=0.167 Sum_probs=74.7
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCcc
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMD 86 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~d 86 (876)
++..+|+++|+.|+|||||+++|+.. .-. .... ...+.+.....+.+....+.+.+|||||+.+
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~--~~~-~~~~-------------~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 67 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCEN--KFN-DKHI-------------TTLGASFLTKKLNIGGKRVNLAIWDTAGQER 67 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHC--CCC-SSCC-------------CCCSCEEEEEEEESSSCEEEEEEEECCCC--
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcC--CCC-cCCC-------------CccceEEEEEEEEECCEEEEEEEEECCCcHh
Confidence 34578999999999999999999876 210 0000 0012222222222222346789999999999
Q ss_pred chHHHHHHHHhcCeEEEEEcCCCccccchHHH-HHHh---hhhcCCcEEEEeccccccc
Q 047363 87 FCSEVSTAARLSDGALVLVDAVEGVHIQTHAV-LRQS---WIEKLTPCLVLNKIDRLIS 141 (876)
Q Consensus 87 F~~e~~~al~~aDgaIlVvDa~egv~~~t~~~-l~~~---~~~~ip~ilviNKiD~~~~ 141 (876)
|.......++.+|++|+|+|+.+......... +..+ ...++|+++|+||+|+...
T Consensus 68 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 126 (170)
T 1z08_A 68 FHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKE 126 (170)
T ss_dssp -----CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGG
T ss_pred hhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccc
Confidence 98888888999999999999987654433322 2222 2357899999999999753
No 105
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.37 E-value=6.6e-13 Score=133.70 Aligned_cols=118 Identities=14% Similarity=0.095 Sum_probs=82.6
Q ss_pred CCCCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEc--CeEEEEEcCC
Q 047363 5 DTRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYK--DYAINLIDSP 82 (876)
Q Consensus 5 ~~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~--~~~inlIDTP 82 (876)
.+....+|+++|+.|+|||||+++|+.. . ........ .+... ...+.+. .+.+.|||||
T Consensus 14 ~~~~~~ki~v~G~~~~GKssli~~l~~~--~--~~~~~~~t------------~~~~~---~~~~~~~~~~~~~~i~D~~ 74 (194)
T 2atx_A 14 PGALMLKCVVVGDGAVGKTCLLMSYAND--A--FPEEYVPT------------VFDHY---AVSVTVGGKQYLLGLYDTA 74 (194)
T ss_dssp CEEEEEEEEEEECTTSSHHHHHHHHHHS--S--CCCSCCCS------------SCCCE---EEEEESSSCEEEEEEECCC
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHhcC--C--CCCCCCCc------------cccee---EEEEEECCEEEEEEEEECC
Confidence 3345679999999999999999999876 2 11000000 01111 1122333 3789999999
Q ss_pred CCccchHHHHHHHHhcCeEEEEEcCCCccccchH--HHHHHhhhh--cCCcEEEEeccccccc
Q 047363 83 GHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTH--AVLRQSWIE--KLTPCLVLNKIDRLIS 141 (876)
Q Consensus 83 Gh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~--~~l~~~~~~--~ip~ilviNKiD~~~~ 141 (876)
|+.+|......+++.+|++|+|+|+.+....... ..+..+... ++|+++|+||+|+...
T Consensus 75 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 137 (194)
T 2atx_A 75 GQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDD 137 (194)
T ss_dssp CSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTC
T ss_pred CCcchhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccc
Confidence 9999988888889999999999999876544433 233444444 7999999999999753
No 106
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.37 E-value=2.1e-12 Score=128.69 Aligned_cols=115 Identities=15% Similarity=0.163 Sum_probs=75.6
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccch
Q 047363 9 IRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFC 88 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~ 88 (876)
..+|+++|+.|+|||||+++|+.. .- ... ..+.. + +.....+.+....+.++||||||+.+|.
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~--~~-~~~-~~~t~------------~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 66 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQN--HF-VDE-YDPTI------------E-DSYRKQVVIDGETCLLDILDTAGQEEYS 66 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS--SC-CCC-CCTTC------------C-EEEEEEEEETTEEEEEEEEECCCC---C
T ss_pred EEEEEEECCCCCCHHHHHHHHHhC--CC-CCC-CCCCc------------h-heEEEEEEECCcEEEEEEEECCCcHHHH
Confidence 468999999999999999999876 21 110 00000 0 1111112222223568889999999999
Q ss_pred HHHHHHHHhcCeEEEEEcCCCccccchHHHH-HH----hhhhcCCcEEEEecccccc
Q 047363 89 SEVSTAARLSDGALVLVDAVEGVHIQTHAVL-RQ----SWIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 89 ~e~~~al~~aDgaIlVvDa~egv~~~t~~~l-~~----~~~~~ip~ilviNKiD~~~ 140 (876)
.....+++.+|++++|+|+.+.........| .. ....++|+++|+||+|+..
T Consensus 67 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~ 123 (189)
T 4dsu_A 67 AMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS 123 (189)
T ss_dssp TTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSS
T ss_pred HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcc
Confidence 9999999999999999999876443332222 22 2234789999999999974
No 107
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.37 E-value=4.7e-12 Score=145.18 Aligned_cols=117 Identities=16% Similarity=0.197 Sum_probs=85.4
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccc
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDF 87 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF 87 (876)
...+|+|+|++|+|||||+++|++. ...+... ..|+|.......+.+.+..+.+|||||...+
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~--~~~~v~~---------------~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~ 241 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNK--ERALVSP---------------IPGTTRDPVDDEVFIDGRKYVFVDTAGLRRK 241 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTS--TTEEECC---------------CC------CCEEEEETTEEEEESSCSCC---
T ss_pred cCceEEEECCCCCCHHHHHHHHhCC--cccccCC---------------CCCCcCCceEEEEEECCEEEEEEECCCCccc
Confidence 4579999999999999999999866 2211111 1244544444567788889999999998543
Q ss_pred hH------------HHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEeccccccc
Q 047363 88 CS------------EVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLIS 141 (876)
Q Consensus 88 ~~------------e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~~ 141 (876)
.. .+..+++.+|++++|+|+.++...+...++..+...++|+++|+||+|+...
T Consensus 242 ~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~~~~~~ilv~NK~Dl~~~ 307 (439)
T 1mky_A 242 SRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLVVH 307 (439)
T ss_dssp --------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSTT
T ss_pred cccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCCc
Confidence 21 2356889999999999999988877777777778889999999999999753
No 108
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.37 E-value=1.2e-12 Score=132.54 Aligned_cols=118 Identities=13% Similarity=0.109 Sum_probs=79.6
Q ss_pred CCCCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEE---EcCeEEEEEcC
Q 047363 5 DTRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALH---YKDYAINLIDS 81 (876)
Q Consensus 5 ~~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~---~~~~~inlIDT 81 (876)
.+++..+|+++|..|+|||||+++|.+. .. .. ...+.+.....+... ...+.++||||
T Consensus 16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~--~~--~~---------------~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt 76 (196)
T 3llu_A 16 FQGSKPRILLMGLRRSGKSSIQKVVFHK--MS--PN---------------ETLFLESTNKIYKDDISNSSFVNFQIWDF 76 (196)
T ss_dssp ----CCEEEEEESTTSSHHHHHHHHHSC--CC--GG---------------GGGGCCCCCSCEEEEECCTTSCCEEEEEC
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHHhc--CC--Cc---------------ceeeeccccceeeeeccCCCeeEEEEEEC
Confidence 4456789999999999999999977543 10 00 011222222222322 24588999999
Q ss_pred CCCccchHHH---HHHHHhcCeEEEEEcCCCccccchHHHHHHhhh-----hcCCcEEEEeccccccc
Q 047363 82 PGHMDFCSEV---STAARLSDGALVLVDAVEGVHIQTHAVLRQSWI-----EKLTPCLVLNKIDRLIS 141 (876)
Q Consensus 82 PGh~dF~~e~---~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~-----~~ip~ilviNKiD~~~~ 141 (876)
||+.+|.... ..+++.+|++|+|+|+.+........+..++.+ .++|+++|+||+|+...
T Consensus 77 ~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~ 144 (196)
T 3llu_A 77 PGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSD 144 (196)
T ss_dssp CSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCH
T ss_pred CCCHHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCch
Confidence 9999998777 799999999999999998632222333333332 37899999999999754
No 109
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.36 E-value=3.2e-13 Score=154.71 Aligned_cols=114 Identities=21% Similarity=0.281 Sum_probs=82.8
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCc----
Q 047363 10 RNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHM---- 85 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~---- 85 (876)
++|+|+|++|+|||||+++|++. .-.+ .+...|+|.......+.|.+..+.+|||||+.
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~--~~~~---------------v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~ 66 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGE--RISI---------------VEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDE 66 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEE--ECC--------------------------CEEEECTTCSSCCEEEC---------
T ss_pred CEEEEECCCCCCHHHHHHHHhCC--Ccee---------------ecCCCCCccceEEEEEEECCceEEEEECCCCCCcch
Confidence 68999999999999999999754 1111 01123666666666677778899999999986
Q ss_pred ----cchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccc
Q 047363 86 ----DFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 86 ----dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~ 140 (876)
.|...+..+++.+|++|+|+|+.+|.......+.+.+.+.++|+++|+||+|+..
T Consensus 67 ~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~~ 125 (436)
T 2hjg_A 67 PFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTE 125 (436)
T ss_dssp CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC--
T ss_pred hHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCcc
Confidence 5667788899999999999999999988887777778888999999999999864
No 110
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.36 E-value=2.3e-12 Score=128.91 Aligned_cols=115 Identities=16% Similarity=0.203 Sum_probs=83.5
Q ss_pred CCCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCc
Q 047363 6 TRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHM 85 (876)
Q Consensus 6 ~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~ 85 (876)
+.+..+|+++|+.|+|||||+++|.+. . .. .+. ...|.+ ...+.+.++.+.+|||||+.
T Consensus 13 ~~~~~ki~ivG~~~vGKSsL~~~l~~~--~--~~-------~~~------~t~g~~----~~~~~~~~~~l~i~Dt~G~~ 71 (181)
T 1fzq_A 13 PDQEVRILLLGLDNAGKTTLLKQLASE--D--IS-------HIT------PTQGFN----IKSVQSQGFKLNVWDIGGQR 71 (181)
T ss_dssp CSSCEEEEEEESTTSSHHHHHHHHCCS--C--CE-------EEE------EETTEE----EEEEEETTEEEEEEECSSCG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhcC--C--CC-------ccc------CcCCeE----EEEEEECCEEEEEEECCCCH
Confidence 356789999999999999999999643 1 10 000 011322 23455678999999999999
Q ss_pred cchHHHHHHHHhcCeEEEEEcCCCccccchH-HHHHHhh----hhcCCcEEEEeccccccc
Q 047363 86 DFCSEVSTAARLSDGALVLVDAVEGVHIQTH-AVLRQSW----IEKLTPCLVLNKIDRLIS 141 (876)
Q Consensus 86 dF~~e~~~al~~aDgaIlVvDa~egv~~~t~-~~l~~~~----~~~ip~ilviNKiD~~~~ 141 (876)
.|......+++.+|++|+|+|+.+....... ..+.... ..++|+++|+||+|+...
T Consensus 72 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 132 (181)
T 1fzq_A 72 KIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTA 132 (181)
T ss_dssp GGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTC
T ss_pred HHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccC
Confidence 9999899999999999999999876543322 2223222 257899999999999753
No 111
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.36 E-value=1.3e-12 Score=132.17 Aligned_cols=114 Identities=18% Similarity=0.145 Sum_probs=78.3
Q ss_pred CCCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCc
Q 047363 6 TRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHM 85 (876)
Q Consensus 6 ~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~ 85 (876)
..+..+|+++|+.|+|||||+++|+.. . .. .. .. |+......+.+.+..+++|||||+.
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~--~--~~----------~~---~~----t~~~~~~~~~~~~~~~~i~Dt~G~~ 84 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKLG--E--IV----------TT---IP----TIGFNVETVEYKNICFTVWDVGGQD 84 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCSS--C--CE----------EE---EE----ETTEEEEEEEETTEEEEEEECC---
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHhC--C--cc----------cc---CC----cCceeEEEEEECCEEEEEEECCCCH
Confidence 345678999999999999999999643 1 11 00 01 1122233556688999999999999
Q ss_pred cchHHHHHHHHhcCeEEEEEcCCCccccchH-HHHHHhhh----hcCCcEEEEecccccc
Q 047363 86 DFCSEVSTAARLSDGALVLVDAVEGVHIQTH-AVLRQSWI----EKLTPCLVLNKIDRLI 140 (876)
Q Consensus 86 dF~~e~~~al~~aDgaIlVvDa~egv~~~t~-~~l~~~~~----~~ip~ilviNKiD~~~ 140 (876)
+|......+++.+|++|+|+|+.+....... ..+..... .++|+++|+||+|+..
T Consensus 85 ~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~ 144 (192)
T 2b6h_A 85 KIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPN 144 (192)
T ss_dssp --CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred hHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCC
Confidence 9988888999999999999999876543332 22333222 3789999999999965
No 112
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.36 E-value=2.8e-12 Score=128.44 Aligned_cols=113 Identities=16% Similarity=0.103 Sum_probs=79.2
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCcc
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMD 86 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~d 86 (876)
.+..+|+++|+.|+|||||+++|+.. .-. .+. ...|.+ ...+.++++.+.+|||||+.+
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~--~~~---------~~~------~t~~~~----~~~~~~~~~~~~i~Dt~G~~~ 72 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMN--EVV---------HTS------PTIGSN----VEEIVINNTRFLMWDIGGQES 72 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTT--SCE---------EEE------CCSCSS----CEEEEETTEEEEEEECCC---
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC--CCC---------cCc------CCCccc----eEEEEECCEEEEEEECCCCHh
Confidence 35678999999999999999999854 110 010 011222 234456789999999999999
Q ss_pred chHHHHHHHHhcCeEEEEEcCCCccccchH-HHHHHhh----hhcCCcEEEEecccccc
Q 047363 87 FCSEVSTAARLSDGALVLVDAVEGVHIQTH-AVLRQSW----IEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 87 F~~e~~~al~~aDgaIlVvDa~egv~~~t~-~~l~~~~----~~~ip~ilviNKiD~~~ 140 (876)
|.......++.+|++|+|+|+.+..+.... ..+..+. ..++|+++|+||+|+..
T Consensus 73 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 131 (187)
T 1zj6_A 73 LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE 131 (187)
T ss_dssp -CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTT
T ss_pred HHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcC
Confidence 988888999999999999999877543332 2333333 25789999999999975
No 113
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.36 E-value=1.1e-12 Score=133.39 Aligned_cols=112 Identities=23% Similarity=0.230 Sum_probs=76.4
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccc
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDF 87 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF 87 (876)
+..+|+++|++|+|||||+++|... .... +. .|+......+.+++..+++|||||+.+|
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~----~~~~-------~~----------~t~~~~~~~~~~~~~~l~i~Dt~G~~~~ 82 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDD----RLGQ-------HV----------PTLHPTSEELTIAGMTFTTFDLGGHIQA 82 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC---------------------------CCCCCSCEEEEETTEEEEEEEECC----
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC----CCCc-------cC----------CCCCceeEEEEECCEEEEEEECCCcHhh
Confidence 4468999999999999999999643 1110 00 0111122355667899999999999999
Q ss_pred hHHHHHHHHhcCeEEEEEcCCCccccchH-HHHHHhh----hhcCCcEEEEecccccc
Q 047363 88 CSEVSTAARLSDGALVLVDAVEGVHIQTH-AVLRQSW----IEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 88 ~~e~~~al~~aDgaIlVvDa~egv~~~t~-~~l~~~~----~~~ip~ilviNKiD~~~ 140 (876)
...+..+++.+|++|+|+|+.+....... ..+.... ..++|+++|+||+|+..
T Consensus 83 ~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 140 (198)
T 1f6b_A 83 RRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE 140 (198)
T ss_dssp CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT
T ss_pred HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc
Confidence 88888889999999999999876543322 2222222 35789999999999975
No 114
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.36 E-value=1.4e-12 Score=133.78 Aligned_cols=119 Identities=20% Similarity=0.185 Sum_probs=82.5
Q ss_pred CCCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEc----------CeE
Q 047363 6 TRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYK----------DYA 75 (876)
Q Consensus 6 ~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~----------~~~ 75 (876)
.++..+|+|+|+.|+|||||+++|+.. . ... . + ....+++.....+.+... ...
T Consensus 22 ~~~~~ki~vvG~~~~GKSsLi~~l~~~--~--~~~----~--~------~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (217)
T 2f7s_A 22 YDYLIKLLALGDSGVGKTTFLYRYTDN--K--FNP----K--F------ITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 85 (217)
T ss_dssp CSEEEEEEEESCTTSSHHHHHHHHHCS--C--CCC----E--E------EEEEEEEEEEEEEEEEC-------CCEEEEE
T ss_pred cceeEEEEEECcCCCCHHHHHHHHhcC--C--CCc----C--C------CCceeEEEEEEEEEECCccccccccCceeEE
Confidence 345688999999999999999999854 1 110 0 0 001122222222222222 578
Q ss_pred EEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHH-HHhhh----hcCCcEEEEecccccc
Q 047363 76 INLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVL-RQSWI----EKLTPCLVLNKIDRLI 140 (876)
Q Consensus 76 inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l-~~~~~----~~ip~ilviNKiD~~~ 140 (876)
++||||||+.+|...+...++.+|++|+|+|+.+.........| ..+.. .++|+++|+||+|+..
T Consensus 86 l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~ 155 (217)
T 2f7s_A 86 LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPD 155 (217)
T ss_dssp EEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGG
T ss_pred EEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCcccc
Confidence 99999999999999999999999999999999876554443333 22222 5789999999999965
No 115
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.36 E-value=2.9e-12 Score=136.63 Aligned_cols=116 Identities=17% Similarity=0.102 Sum_probs=79.4
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccc
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDF 87 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF 87 (876)
+..+|+++|++|+|||||+++|++. ...... ...+.|.......+.+.+..++||||||+.+|
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~--~~~~~~---------------~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~ 97 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGE--QVVRVS---------------PFQAEGLRPVMVSRTMGGFTINIIDTPGLVEA 97 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTS--CCSCCC---------------SSCC-CCCCEEEEEEETTEEEEEEECCCSEET
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC--CCcccC---------------CCCCcceeeEEEEEEECCeeEEEEECCCCCCc
Confidence 4578999999999999999999876 321110 11234555556677888999999999999998
Q ss_pred hHHHHHHHH---------hcCeEEEEEcCCCc-cccchHHHHHHhhhh-----cCCcEEEEecccccc
Q 047363 88 CSEVSTAAR---------LSDGALVLVDAVEG-VHIQTHAVLRQSWIE-----KLTPCLVLNKIDRLI 140 (876)
Q Consensus 88 ~~e~~~al~---------~aDgaIlVvDa~eg-v~~~t~~~l~~~~~~-----~ip~ilviNKiD~~~ 140 (876)
......+++ .+|++|+|+|.... .......+++.+... ..|+++|+||+|+..
T Consensus 98 ~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 98 GYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP 165 (262)
T ss_dssp TEECHHHHHHHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred ccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence 543333332 78999999877543 222233445444432 248899999999853
No 116
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.35 E-value=1.9e-12 Score=131.69 Aligned_cols=116 Identities=17% Similarity=0.160 Sum_probs=79.8
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcC--eEEEEEcCCCC
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKD--YAINLIDSPGH 84 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~--~~inlIDTPGh 84 (876)
++..+|+|+|+.|+|||||+++|+.. ..... + ....+.+... ..+.+.+ +.+.||||||+
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~--~~~~~-----------~---~~t~~~~~~~--~~~~~~~~~~~l~l~Dt~G~ 84 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIEN--KFKQD-----------S---NHTIGVEFGS--RVVNVGGKTVKLQIWDTAGQ 84 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC----------------------------CCEEE--EEEEETTEEEEEEEECCTTH
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhC--CCCcc-----------C---CCcccceeEE--EEEEECCeeeEEEEEcCCCc
Confidence 45689999999999999999999854 11000 0 0011222222 2333343 78999999999
Q ss_pred ccchHHHHHHHHhcCeEEEEEcCCCccccchHHH-HHHhh---hhcCCcEEEEecccccc
Q 047363 85 MDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAV-LRQSW---IEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 85 ~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~-l~~~~---~~~ip~ilviNKiD~~~ 140 (876)
.+|......+++.+|++|+|+|+.+......... +..+. ..++|+++|+||+|+..
T Consensus 85 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 144 (200)
T 2o52_A 85 ERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDP 144 (200)
T ss_dssp HHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGG
T ss_pred HhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccc
Confidence 9988888899999999999999987665444332 23332 24789999999999964
No 117
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.35 E-value=3e-12 Score=125.97 Aligned_cols=112 Identities=19% Similarity=0.199 Sum_probs=77.2
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccch
Q 047363 9 IRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFC 88 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~ 88 (876)
..+|+++|++|+|||||+++|++. .-.. + ...++|+......+.+.+..+.+|||||+.+|.
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~--~~~~-----~-----------~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~ 64 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGE--NVYI-----G-----------NWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLT 64 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC--SSSC-----C----------------CCCCCEEEEEETTEEEEEEECCCCSCSS
T ss_pred ccEEEEECCCCCCHHHHHHHHhCC--Ceec-----c-----------CCCCcceeeeEEEEEECCcEEEEEECCCcccCC
Confidence 368999999999999999999754 1110 0 011344444444566678899999999999884
Q ss_pred ------HHHHHHHH--hcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccc
Q 047363 89 ------SEVSTAAR--LSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 89 ------~e~~~al~--~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~ 140 (876)
.....+++ .+|++++|+|+.... .....+..+.+.++|+++|+||+|+..
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~--~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 122 (165)
T 2wji_A 65 ANSIDEIIARDYIINEKPDLVVNIVDATALE--RNLYLTLQLMEMGANLLLALNKMDLAK 122 (165)
T ss_dssp SSSHHHHHHHHHHHHHCCSEEEEEEETTCHH--HHHHHHHHHHHTTCCEEEEEECHHHHH
T ss_pred CcchhHHHHHHHHhcCCCCEEEEEecCCchh--HhHHHHHHHHhcCCCEEEEEEchHhcc
Confidence 22234443 789999999997521 223344555567899999999999864
No 118
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.35 E-value=3.6e-13 Score=155.14 Aligned_cols=115 Identities=21% Similarity=0.265 Sum_probs=87.9
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCC----
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPG---- 83 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPG---- 83 (876)
..++|+|+|++|+|||||+++|++. .-. ..+...|+|.......+.+.+..+++|||||
T Consensus 22 ~~~~V~lvG~~nvGKSTL~n~l~~~--~~~---------------~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~ 84 (456)
T 4dcu_A 22 GKPVVAIVGRPNVGKSTIFNRIAGE--RIS---------------IVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIG 84 (456)
T ss_dssp -CCEEEEECSSSSSHHHHHHHHEEE--EEC--------------------------CEEEECTTCSSCCEEECCCC----
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC--CCc---------------ccCCCCCcceeEEEEEEEECCceEEEEECCCCCCc
Confidence 3579999999999999999999654 100 0112346777666677777889999999999
Q ss_pred ----CccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEeccccc
Q 047363 84 ----HMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRL 139 (876)
Q Consensus 84 ----h~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~ 139 (876)
+..|...+..+++.+|++|+|+|+.++.......+++.+.+.++|+++|+||+|+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 85 DEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNT 144 (456)
T ss_dssp --CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC---
T ss_pred chHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccch
Confidence 55667788899999999999999999999888888888888999999999999975
No 119
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.35 E-value=2.8e-12 Score=130.32 Aligned_cols=118 Identities=19% Similarity=0.169 Sum_probs=80.4
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCcc
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMD 86 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~d 86 (876)
.+..+|+|+|..|+|||||+++|+.. .-... .. ...+.+. ...+.+....+.+.||||||+.+
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~--~~~~~--~~------------~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~ 84 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEG--EFSEG--YD------------PTVENTY-SKIVTLGKDEFHLHLVDTAGQDE 84 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHS--CCCSC--CC------------CCSEEEE-EEEEC----CEEEEEEEECCCCT
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhC--CCCCC--CC------------CccceEE-EEEEEECCEEEEEEEEECCCccc
Confidence 45688999999999999999999976 21100 00 0011222 22334445578899999999999
Q ss_pred chHHHHHHHHhcCeEEEEEcCCCccccchHHHH-HHhh----hhcCCcEEEEeccccccc
Q 047363 87 FCSEVSTAARLSDGALVLVDAVEGVHIQTHAVL-RQSW----IEKLTPCLVLNKIDRLIS 141 (876)
Q Consensus 87 F~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l-~~~~----~~~ip~ilviNKiD~~~~ 141 (876)
|......+++.+|++|+|+|+.+.........| ..+. ..++|+++|+||+|+...
T Consensus 85 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 144 (201)
T 3oes_A 85 YSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPE 144 (201)
T ss_dssp TCCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGG
T ss_pred hHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccc
Confidence 988888899999999999999876544333322 2222 347899999999998753
No 120
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.35 E-value=1.5e-12 Score=130.80 Aligned_cols=115 Identities=14% Similarity=0.132 Sum_probs=82.1
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCcc
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMD 86 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~d 86 (876)
.+..+|+++|+.|+|||||+++|+.. ...... ...|+......+.++++.+.||||||+.+
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~--~~~~~~-----------------~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~ 79 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPS--NAQSQN-----------------ILPTIGFSIEKFKSSSLSFTVFDMSGQGR 79 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCG--GGCCSS-----------------CCCCSSEEEEEEECSSCEEEEEEECCSTT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC--CCCCCC-----------------cCCccceeEEEEEECCEEEEEEECCCCHH
Confidence 34678999999999999999999755 110100 00122222345566789999999999999
Q ss_pred chHHHHHHHHhcCeEEEEEcCCCccccchH-HHHHHhhh------hcCCcEEEEecccccc
Q 047363 87 FCSEVSTAARLSDGALVLVDAVEGVHIQTH-AVLRQSWI------EKLTPCLVLNKIDRLI 140 (876)
Q Consensus 87 F~~e~~~al~~aDgaIlVvDa~egv~~~t~-~~l~~~~~------~~ip~ilviNKiD~~~ 140 (876)
|......+++.+|++|+|+|+.+....... ..+..+.. .++|+++|+||+|+..
T Consensus 80 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 140 (190)
T 2h57_A 80 YRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRD 140 (190)
T ss_dssp TGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTT
T ss_pred HHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCccc
Confidence 998888999999999999999876433322 22333322 4789999999999975
No 121
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.35 E-value=1.9e-12 Score=137.94 Aligned_cols=114 Identities=21% Similarity=0.277 Sum_probs=86.3
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCcc
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMD 86 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~d 86 (876)
.+..+|+++|++|+|||||+++|++. .- .... ..|+|+......+.+.++.+.||||||+.+
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~--~~----------~~~~------~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~ 64 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGT--KQ----------YVAN------WPGVTVEKKEGVFTYKGYTINLIDLPGTYS 64 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTT--CE----------EEEE------CTTSCCEEEEEEEEETTEEEEEEECCCCSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCC--CC----------cccC------CCCceEEEEEEEEEECCeEEEEEECCCcCc
Confidence 45678999999999999999999765 21 0111 137777777778888889999999999998
Q ss_pred chH-----HH-HHHH--HhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccc
Q 047363 87 FCS-----EV-STAA--RLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 87 F~~-----e~-~~al--~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~ 140 (876)
|.. .+ ...+ ..+|++|+|+|+.... ....++.++.+.++|+++|+||+|+..
T Consensus 65 ~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~~--~~~~~~~~l~~~~~pvilv~NK~Dl~~ 124 (258)
T 3a1s_A 65 LGYSSIDEKIARDYLLKGDADLVILVADSVNPE--QSLYLLLEILEMEKKVILAMTAIDEAK 124 (258)
T ss_dssp CCSSSHHHHHHHHHHHHSCCSEEEEEEETTSCH--HHHHHHHHHHTTTCCEEEEEECHHHHH
T ss_pred cCCCCHHHHHHHHHHhhcCCCEEEEEeCCCchh--hHHHHHHHHHhcCCCEEEEEECcCCCC
Confidence 853 12 3333 4799999999998642 233456677778999999999999864
No 122
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.34 E-value=3.3e-12 Score=124.96 Aligned_cols=116 Identities=16% Similarity=0.103 Sum_probs=70.3
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccch
Q 047363 9 IRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFC 88 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~ 88 (876)
+.+|+++|++|+|||||+++|++. ....... ...+.......+.+....+.+.+|||||+.+|.
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~--~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 65 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGL--QGDHAHE--------------MENSEDTYERRIMVDKEEVTLIVYDIWEQGDAG 65 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC----------------------------CEEEEEEEETTEEEEEEEECCCCC----
T ss_pred cEEEEEECCCCCCHHHHHHHHHhc--cCccccc--------------CCCcCCeeeEEEEECCeEEEEEEEECCCccccc
Confidence 568999999999999999999754 2111000 000111112222222234778899999999987
Q ss_pred H-HHHHHHHhcCeEEEEEcCCCccccchHH-HHHHhhh----hcCCcEEEEecccccc
Q 047363 89 S-EVSTAARLSDGALVLVDAVEGVHIQTHA-VLRQSWI----EKLTPCLVLNKIDRLI 140 (876)
Q Consensus 89 ~-e~~~al~~aDgaIlVvDa~egv~~~t~~-~l~~~~~----~~ip~ilviNKiD~~~ 140 (876)
. .....++.+|++|+|+|+.+........ .+..+.. .++|+++|+||+|+..
T Consensus 66 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 123 (169)
T 3q85_A 66 GWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLAR 123 (169)
T ss_dssp ----CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGG
T ss_pred hhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhh
Confidence 6 4556688899999999998754433322 2333322 3789999999999874
No 123
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.34 E-value=5.9e-12 Score=127.21 Aligned_cols=117 Identities=15% Similarity=0.157 Sum_probs=78.5
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCcc
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMD 86 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~d 86 (876)
.+..+|+++|+.|+|||||+++|+.. .-... ... ..+... ...+.+....+.+.||||||+.+
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~--~~~~~--~~~------------t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~ 88 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTK--RFIWE--YDP------------TLESTY-RHQATIDDEVVSMEILDTAGQED 88 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHS--CCCSC--CCT------------TCCEEE-EEEEEETTEEEEEEEEECCCCCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC--CCCcc--cCC------------CCCceE-EEEEEECCEEEEEEEEECCCCCc
Confidence 45678999999999999999999876 21100 000 011111 11122222347799999999998
Q ss_pred chHHHHHHHHhcCeEEEEEcCCCccccchH-HHHHHh----hhhcCCcEEEEeccccccc
Q 047363 87 FCSEVSTAARLSDGALVLVDAVEGVHIQTH-AVLRQS----WIEKLTPCLVLNKIDRLIS 141 (876)
Q Consensus 87 F~~e~~~al~~aDgaIlVvDa~egv~~~t~-~~l~~~----~~~~ip~ilviNKiD~~~~ 141 (876)
.......++.+|++|+|+|+.+....... ..+..+ ...++|+++|+||+|+...
T Consensus 89 -~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~ 147 (196)
T 2atv_A 89 -TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHS 147 (196)
T ss_dssp -CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGG
T ss_pred -ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccc
Confidence 67788899999999999999875433222 222222 2357899999999999753
No 124
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.34 E-value=1.4e-12 Score=127.32 Aligned_cols=115 Identities=15% Similarity=0.074 Sum_probs=63.4
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccch
Q 047363 9 IRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFC 88 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~ 88 (876)
..+|+++|++|+|||||+++|.+. .-... ....|.+.. ..+.+....+.+.++||||+.+|.
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~--~~~~~---------------~~~~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~ 63 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGV--EDGPE---------------AEAAGHTYD-RSIVVDGEEASLMVYDIWEQDGGR 63 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC---------------------------CEEE-EEEEETTEEEEEEEEECC------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCc--cccCC---------------CCccccceE-EEEEECCEEEEEEEEECCCCccch
Confidence 468999999999999999999643 10000 001122221 122233335678999999999999
Q ss_pred HHHHHHHHhcCeEEEEEcCCCccccchH-HHHHHhh----hhcCCcEEEEeccccccc
Q 047363 89 SEVSTAARLSDGALVLVDAVEGVHIQTH-AVLRQSW----IEKLTPCLVLNKIDRLIS 141 (876)
Q Consensus 89 ~e~~~al~~aDgaIlVvDa~egv~~~t~-~~l~~~~----~~~ip~ilviNKiD~~~~ 141 (876)
......++.+|++++|+|+.+....... ..+..+. ..++|+++|+||+|+...
T Consensus 64 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 121 (166)
T 3q72_A 64 WLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRS 121 (166)
T ss_dssp ---------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSS
T ss_pred hhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccc
Confidence 8889999999999999999865443332 2233333 247899999999999753
No 125
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.34 E-value=1.3e-12 Score=130.37 Aligned_cols=113 Identities=16% Similarity=0.114 Sum_probs=82.1
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCcc
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMD 86 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~d 86 (876)
.+..+|+++|+.|+|||||+++|+.. . .. .+.. ..|.+. ..+.++++.+.+|||||+.+
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~~--~--~~-------~~~~------t~~~~~----~~~~~~~~~~~i~Dt~G~~~ 77 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSMN--E--VV-------HTSP------TIGSNV----EEIVINNTRFLMWDIGGQES 77 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHTT--S--CE-------EEEC------CSSSSC----EEEEETTEEEEEEEESSSGG
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcC--C--CC-------ccCC------cCceee----EEEEECCEEEEEEECCCCHh
Confidence 34678999999999999999999865 1 10 0000 112222 24456789999999999999
Q ss_pred chHHHHHHHHhcCeEEEEEcCCCccccch-HHHHHHhh----hhcCCcEEEEecccccc
Q 047363 87 FCSEVSTAARLSDGALVLVDAVEGVHIQT-HAVLRQSW----IEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 87 F~~e~~~al~~aDgaIlVvDa~egv~~~t-~~~l~~~~----~~~ip~ilviNKiD~~~ 140 (876)
|......+++.+|++|+|+|+.+...... ...+.... ..++|+++|+||+|+..
T Consensus 78 ~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 136 (181)
T 2h17_A 78 LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE 136 (181)
T ss_dssp GTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred HHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCccc
Confidence 98888889999999999999987644332 22333332 36789999999999975
No 126
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.34 E-value=7.4e-13 Score=131.57 Aligned_cols=116 Identities=16% Similarity=0.061 Sum_probs=79.5
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccch
Q 047363 9 IRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFC 88 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~ 88 (876)
..+|+++|++|+|||||+++|+......... .. .+... ...+.+....+.+.+|||||+.+|.
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~----~t------------~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~ 67 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYI----PT------------VFDNY-SANVMVDGKPVNLGLWDTAGQEDYD 67 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCCSSCC----CC------------SCCEE-EEEEEETTEEEEEEEECCCCSGGGT
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCCCCcC----Cc------------cccee-EEEEEECCEEEEEEEEECCCCHhHH
Confidence 4689999999999999999998651110000 00 01111 1112222234678899999999998
Q ss_pred HHHHHHHHhcCeEEEEEcCCCccccchHH--HHHHhhhh--cCCcEEEEeccccccc
Q 047363 89 SEVSTAARLSDGALVLVDAVEGVHIQTHA--VLRQSWIE--KLTPCLVLNKIDRLIS 141 (876)
Q Consensus 89 ~e~~~al~~aDgaIlVvDa~egv~~~t~~--~l~~~~~~--~ip~ilviNKiD~~~~ 141 (876)
.....+++.+|++|+|+|+.++.+..... .+..+... ++|+++|+||+|+...
T Consensus 68 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 124 (186)
T 1mh1_A 68 RLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 124 (186)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTC
T ss_pred HHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEccccccc
Confidence 88888899999999999998766544432 33333333 8899999999999753
No 127
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.34 E-value=1.6e-12 Score=129.82 Aligned_cols=114 Identities=18% Similarity=0.188 Sum_probs=83.0
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCcc
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMD 86 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~d 86 (876)
.+..+|+++|+.|+|||||+++|++. . ... .. ...|.+ ...+.++++.+++|||||+.+
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~--~--~~~----------~~---~t~~~~----~~~~~~~~~~~~~~Dt~G~~~ 74 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGE--D--VDT----------IS---PTLGFN----IKTLEHRGFKLNIWDVGGQKS 74 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTC--C--CSS----------CC---CCSSEE----EEEEEETTEEEEEEEECCSHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcC--C--CCc----------cc---ccCccc----eEEEEECCEEEEEEECCCCHh
Confidence 45689999999999999999999755 2 110 00 011222 234556789999999999999
Q ss_pred chHHHHHHHHhcCeEEEEEcCCCccccchH-HHHHHhh----hhcCCcEEEEeccccccc
Q 047363 87 FCSEVSTAARLSDGALVLVDAVEGVHIQTH-AVLRQSW----IEKLTPCLVLNKIDRLIS 141 (876)
Q Consensus 87 F~~e~~~al~~aDgaIlVvDa~egv~~~t~-~~l~~~~----~~~ip~ilviNKiD~~~~ 141 (876)
|......+++.+|++|+|+|+.+..+.... ..+.... ..++|+++|+||+|+...
T Consensus 75 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 134 (186)
T 1ksh_A 75 LRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGA 134 (186)
T ss_dssp HHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred HHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCC
Confidence 988888889999999999999876543332 2333332 247899999999999753
No 128
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.33 E-value=4.2e-12 Score=126.82 Aligned_cols=113 Identities=19% Similarity=0.177 Sum_probs=81.6
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccc
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDF 87 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF 87 (876)
+..+|+++|+.|+|||||+++|++. .-. . +...++|+......+.+.+..+++|||||+.+|
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~--~~~----------~------~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~ 67 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGE--NVY----------I------GNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSL 67 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTT--CEE----------E------EECTTSCCEEEEEEEEETTEEEEEEECCCCSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC--Ccc----------c------cCCCCeeccceEEEEEeCCcEEEEEECCCcCcc
Confidence 4578999999999999999999754 100 0 011245555555667778899999999999988
Q ss_pred h------HHHHHHHH--hcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccc
Q 047363 88 C------SEVSTAAR--LSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 88 ~------~e~~~al~--~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~ 140 (876)
. ......++ .+|++++|+|+... ......+..+...++|+++|+||+|+..
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~--~~~~~~~~~~~~~~~piilv~nK~Dl~~ 126 (188)
T 2wjg_A 68 TANSIDEIIARDYIINEKPDLVVNIVDATAL--ERNLYLTLQLMEMGANLLLALNKMDLAK 126 (188)
T ss_dssp SSSSHHHHHHHHHHHHHCCSEEEEEEEGGGH--HHHHHHHHHHHTTTCCEEEEEECHHHHH
T ss_pred ccccHHHHHHHHHHhccCCCEEEEEecchhH--HHHHHHHHHHHhcCCCEEEEEEhhhccc
Confidence 4 22334444 48999999998742 2223445556667899999999999864
No 129
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.33 E-value=3.4e-12 Score=128.51 Aligned_cols=117 Identities=14% Similarity=0.142 Sum_probs=80.3
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCcc
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMD 86 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~d 86 (876)
....+|+++|+.|+|||||+++|+.........+ ..+.+.. ..+.+....+.+.||||||+.+
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~----------------t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~ 68 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIP----------------TIEDTYR-QVISCDKSVCTLQITDTTGSHQ 68 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSC----------------CCCEEEE-EEEEETTEEEEEEEEECCGGGS
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccC----------------cccccee-EEEEECCEEEEEEEEeCCChHH
Confidence 3457899999999999999999987511100000 0011111 1122222346899999999999
Q ss_pred chHHHHHHHHhcCeEEEEEcCCCccccch-HHHHHHhhh-----hcCCcEEEEecccccc
Q 047363 87 FCSEVSTAARLSDGALVLVDAVEGVHIQT-HAVLRQSWI-----EKLTPCLVLNKIDRLI 140 (876)
Q Consensus 87 F~~e~~~al~~aDgaIlVvDa~egv~~~t-~~~l~~~~~-----~~ip~ilviNKiD~~~ 140 (876)
|......+++.+|++|+|+|+.+...... ...+..+.. .++|+++|+||+|+..
T Consensus 69 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~ 128 (199)
T 2gf0_A 69 FPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ 128 (199)
T ss_dssp CHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS
T ss_pred hHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc
Confidence 99999999999999999999987544332 223333322 3789999999999875
No 130
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.33 E-value=1.7e-12 Score=130.92 Aligned_cols=117 Identities=14% Similarity=0.079 Sum_probs=80.5
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccc
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDF 87 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF 87 (876)
+..+|+++|+.|+|||||+++|+.. . ........ .+.+.. ..+.+....+.++||||||+.+|
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~--~--~~~~~~~t------------~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~ 84 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKG--E--IPTAYVPT------------VFENFS-HVMKYKNEEFILHLWDTAGQEEY 84 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS--C--CCSSCCCC------------SEEEEE-EEEEETTEEEEEEEEEECCSGGG
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcC--C--CCCccCCe------------eeeeeE-EEEEECCEEEEEEEEECCCcHHH
Confidence 4578999999999999999999876 2 11000000 111211 11222223466799999999999
Q ss_pred hHHHHHHHHhcCeEEEEEcCCCccccchH-HHH-HHhhhh--cCCcEEEEeccccccc
Q 047363 88 CSEVSTAARLSDGALVLVDAVEGVHIQTH-AVL-RQSWIE--KLTPCLVLNKIDRLIS 141 (876)
Q Consensus 88 ~~e~~~al~~aDgaIlVvDa~egv~~~t~-~~l-~~~~~~--~ip~ilviNKiD~~~~ 141 (876)
......+++.+|++|+|+|+.+....... ..| ..+... ++|+++|+||+|+...
T Consensus 85 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 142 (194)
T 3reg_A 85 DRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKD 142 (194)
T ss_dssp TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCT
T ss_pred HHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccC
Confidence 98889999999999999999876554442 223 233322 6899999999999753
No 131
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.33 E-value=2.6e-12 Score=132.96 Aligned_cols=116 Identities=16% Similarity=0.174 Sum_probs=80.0
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcC--eEEEEEcCCCC
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKD--YAINLIDSPGH 84 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~--~~inlIDTPGh 84 (876)
+...+|+|+|+.|+|||||+++|+.. .-.... ....|.+... ..+.+.+ +.+.||||||+
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~--~~~~~~--------------~~t~~~~~~~--~~~~~~~~~~~~~i~Dt~G~ 72 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKN--EFNMDS--------------KSTIGVEFAT--RTLEIEGKRIKAQIWDTAGQ 72 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHC--CCCC--------------------CCSEEE--EEEEETTEEEEEEEECCTTT
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcC--CCCCCC--------------CCcccceeEE--EEEEECCEEEEEEEEECCCc
Confidence 45689999999999999999999876 211000 0011222222 2333444 78999999999
Q ss_pred ccchHHHHHHHHhcCeEEEEEcCCCccccchHHH-HHHhhh---hcCCcEEEEecccccc
Q 047363 85 MDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAV-LRQSWI---EKLTPCLVLNKIDRLI 140 (876)
Q Consensus 85 ~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~-l~~~~~---~~ip~ilviNKiD~~~ 140 (876)
.+|......+++.+|++|+|+|+.+......... +..+.. .++|+++|+||+|+..
T Consensus 73 ~~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~ 132 (223)
T 3cpj_B 73 ERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAH 132 (223)
T ss_dssp TTTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGG
T ss_pred cchhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 9998888889999999999999987765444332 233332 3789999999999975
No 132
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.33 E-value=3.5e-12 Score=127.80 Aligned_cols=113 Identities=14% Similarity=0.148 Sum_probs=68.6
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEc--CeEEEEEcCCCCcc
Q 047363 9 IRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYK--DYAINLIDSPGHMD 86 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~--~~~inlIDTPGh~d 86 (876)
-.+|+++|+.|+|||||+++|+.. .- .. ...+. .+... ...+.+. .+.+.||||||+.+
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~--~~-~~-~~~~t------------~~~~~---~~~~~~~~~~~~~~l~Dt~G~~~ 81 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQN--HF-VD-EYDPT------------IEDSY---RKQVVIDGETCLLDILDTAGQEE 81 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS--SC-CS-CCCTT------------CCEEE---EEEEEETTEEEEEEEEECCC---
T ss_pred eeEEEEECcCCCCHHHHHHHHHcC--CC-cc-ccCCc------------cceEE---EEEEEECCEEEEEEEEECCChHH
Confidence 368999999999999999999876 21 10 00000 01111 1122233 36799999999999
Q ss_pred chHHHHHHHHhcCeEEEEEcCCCccccchHHHH-HHhhh----hcCCcEEEEecccccc
Q 047363 87 FCSEVSTAARLSDGALVLVDAVEGVHIQTHAVL-RQSWI----EKLTPCLVLNKIDRLI 140 (876)
Q Consensus 87 F~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l-~~~~~----~~ip~ilviNKiD~~~ 140 (876)
|......+++.+|++|+|+|+.+.........| ..+.. .++|+++|+||+|+..
T Consensus 82 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~ 140 (190)
T 3con_A 82 YSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT 140 (190)
T ss_dssp --------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC
T ss_pred HHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc
Confidence 999999999999999999999876544333322 22222 3789999999999875
No 133
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.32 E-value=4.5e-12 Score=138.19 Aligned_cols=134 Identities=13% Similarity=0.207 Sum_probs=85.3
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCC----CCcccccCCceeecc--------------------------Chh---
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGG----GLLHPKLAGKLRFMD--------------------------YLD--- 53 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~----g~i~~~~~g~~~~~d--------------------------~~~--- 53 (876)
.....|+|+|++|+|||||+++|++.... +.++.. .+.+.... ...
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRR-PLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIRE 100 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC---------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHH
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeee-eEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHH
Confidence 35688999999999999999999876210 111111 11101110 000
Q ss_pred ---hhh------hcceeeeeeEEEEEE-cCeEEEEEcCCCCcc-------------chHHHHHHHHhcCeEEEEEcC-CC
Q 047363 54 ---EEQ------RRAITMKSSSIALHY-KDYAINLIDSPGHMD-------------FCSEVSTAARLSDGALVLVDA-VE 109 (876)
Q Consensus 54 ---~E~------~rgiti~~~~i~~~~-~~~~inlIDTPGh~d-------------F~~e~~~al~~aDgaIlVvDa-~e 109 (876)
.+. ..|++.....+.+.. ....++||||||+.+ +...+..+++.+|++|+|+|+ ..
T Consensus 101 ~i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~ 180 (315)
T 1jwy_B 101 EIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANT 180 (315)
T ss_dssp HHHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSS
T ss_pred HHHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCc
Confidence 000 013332222233322 357899999999865 566788899999999999997 55
Q ss_pred ccccch-HHHHHHhhhhcCCcEEEEeccccccc
Q 047363 110 GVHIQT-HAVLRQSWIEKLTPCLVLNKIDRLIS 141 (876)
Q Consensus 110 gv~~~t-~~~l~~~~~~~ip~ilviNKiD~~~~ 141 (876)
+...+. ..+++.+...++|+++|+||+|+...
T Consensus 181 ~~~~~~~~~i~~~~~~~~~~~i~v~NK~Dl~~~ 213 (315)
T 1jwy_B 181 DLANSDALQLAKEVDPEGKRTIGVITKLDLMDK 213 (315)
T ss_dssp CSTTCSHHHHHHHHCSSCSSEEEEEECTTSSCS
T ss_pred chhhhHHHHHHHHhCCCCCcEEEEEcCcccCCc
Confidence 655444 36777777789999999999999754
No 134
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.31 E-value=4.2e-12 Score=138.70 Aligned_cols=114 Identities=13% Similarity=0.216 Sum_probs=82.7
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEE-cCeEEEEEcCCCCccc-
Q 047363 10 RNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHY-KDYAINLIDSPGHMDF- 87 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~-~~~~inlIDTPGh~dF- 87 (876)
.+|+++|.+|+|||||+++|+.. ..... ....|.|+......+.+ +++.+++|||||+.+|
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~--~~~~~---------------~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~ 66 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSN--YSAFD---------------TRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFM 66 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSC--CCTGG---------------GGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhC--CCCcc---------------ccCcCCccceEEEEEEeCCceEEEEEECCCcHHHh
Confidence 68999999999999999999754 21111 11223444444445544 5789999999999998
Q ss_pred ----hHHHHHHHHhcCeEEEEEcCCCccccchHHHHH----Hhhh--hcCCcEEEEecccccc
Q 047363 88 ----CSEVSTAARLSDGALVLVDAVEGVHIQTHAVLR----QSWI--EKLTPCLVLNKIDRLI 140 (876)
Q Consensus 88 ----~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~----~~~~--~~ip~ilviNKiD~~~ 140 (876)
.......++.+|++|+|+|+.+.........|. .+.. .++|+++|+||+|+..
T Consensus 67 ~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~ 129 (307)
T 3r7w_A 67 ENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQ 129 (307)
T ss_dssp HHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSC
T ss_pred hhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccc
Confidence 556777889999999999999876555443332 2221 2789999999999975
No 135
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.31 E-value=1.4e-11 Score=131.93 Aligned_cols=128 Identities=13% Similarity=0.090 Sum_probs=82.3
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccc
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDF 87 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF 87 (876)
...+|+++|++|+|||||+++|++. .-.... + ..+.|.....+.+...++.++||||||+.+|
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~--~~~~~~---------~------~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~ 100 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGE--RVVSIS---------P------FQSEGPRPVMVSRSRAGFTLNIIDTPGLIEG 100 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTS--CCSCCC---------S------SSCCCSSCEEEEEEETTEEEEEEECCCSEET
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCC--Cccccc---------C------CCCcceeeEEEEEeeCCeEEEEEECCCCCCC
Confidence 4578999999999999999999865 211110 0 1233444444566778899999999999887
Q ss_pred h---HHHHHHHH------hcCeEEEEEcCCC-ccccchHHHHHHhhhh-c----CCcEEEEecccccccccccChHHHHH
Q 047363 88 C---SEVSTAAR------LSDGALVLVDAVE-GVHIQTHAVLRQSWIE-K----LTPCLVLNKIDRLISELKLTPLEAYN 152 (876)
Q Consensus 88 ~---~e~~~al~------~aDgaIlVvDa~e-gv~~~t~~~l~~~~~~-~----ip~ilviNKiD~~~~e~~~~~~~~~~ 152 (876)
. ......++ .+|++|+|+|+.. ........+++.+... + +|+++|+||+|+...+ ..+.++...
T Consensus 101 ~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~-~~~~~~~~~ 179 (270)
T 1h65_A 101 GYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD-GLPYDEFFS 179 (270)
T ss_dssp TEECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG-GCCHHHHHH
T ss_pred ccchHHHHHHHHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcC-CCCHHHHHH
Confidence 4 23333332 6899999988754 2332333455544332 2 6899999999986432 223444443
Q ss_pred H
Q 047363 153 R 153 (876)
Q Consensus 153 ~ 153 (876)
+
T Consensus 180 ~ 180 (270)
T 1h65_A 180 K 180 (270)
T ss_dssp H
T ss_pred H
Confidence 3
No 136
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.30 E-value=1.8e-12 Score=129.61 Aligned_cols=118 Identities=15% Similarity=0.066 Sum_probs=79.6
Q ss_pred CCCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCc
Q 047363 6 TRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHM 85 (876)
Q Consensus 6 ~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~ 85 (876)
.....+|+++|+.|+|||||+++|+.........+ . .+... ...+.+....+.+.||||||+.
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~----t------------~~~~~-~~~~~~~~~~~~~~i~Dt~G~~ 66 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVP----T------------VFENY-TASFEIDTQRIELSLWDTSGSP 66 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCC----C------------SEEEE-EEEEECSSCEEEEEEEEECCSG
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCC----c------------cceeE-EEEEEECCEEEEEEEEECCCCh
Confidence 35568899999999999999999987611100000 0 01111 1112222234789999999999
Q ss_pred cchHHHHHHHHhcCeEEEEEcCCCccccchH-HHH-HHhhh--hcCCcEEEEecccccc
Q 047363 86 DFCSEVSTAARLSDGALVLVDAVEGVHIQTH-AVL-RQSWI--EKLTPCLVLNKIDRLI 140 (876)
Q Consensus 86 dF~~e~~~al~~aDgaIlVvDa~egv~~~t~-~~l-~~~~~--~~ip~ilviNKiD~~~ 140 (876)
+|......+++.+|++|+|+|+.+..+.... ..| ..+.. .++|+++|+||+|+..
T Consensus 67 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 125 (184)
T 1m7b_A 67 YYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 125 (184)
T ss_dssp GGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGG
T ss_pred hhhhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhc
Confidence 9988778889999999999999876544332 223 33332 3789999999999974
No 137
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.30 E-value=5.6e-12 Score=126.66 Aligned_cols=109 Identities=14% Similarity=0.106 Sum_probs=75.5
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEc--CeEEEEEcCCCC
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYK--DYAINLIDSPGH 84 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~--~~~inlIDTPGh 84 (876)
.+..+|+|+|..|+|||||+++|+....... +.+ . +.... ..+.+. .+.+.||||||+
T Consensus 18 ~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~-------------~~~---t-~~~~~---~~~~~~~~~~~l~i~Dt~G~ 77 (184)
T 3ihw_A 18 GPELKVGIVGNLSSGKSALVHRYLTGTYVQE-------------ESP---E-GGRFK---KEIVVDGQSYLLLIRDEGGP 77 (184)
T ss_dssp CCEEEEEEECCTTSCHHHHHHHHHHSSCCCC-------------CCT---T-CEEEE---EEEEETTEEEEEEEEECSSS
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCCCC-------------cCC---C-cceEE---EEEEECCEEEEEEEEECCCC
Confidence 3457899999999999999999987611100 000 0 11111 223333 367888999999
Q ss_pred ccchHHHHHHHHhcCeEEEEEcCCCccccch-HHHHHHhhh----hcCCcEEEEecccccc
Q 047363 85 MDFCSEVSTAARLSDGALVLVDAVEGVHIQT-HAVLRQSWI----EKLTPCLVLNKIDRLI 140 (876)
Q Consensus 85 ~dF~~e~~~al~~aDgaIlVvDa~egv~~~t-~~~l~~~~~----~~ip~ilviNKiD~~~ 140 (876)
.+|. .++.+|++|+|+|+.+..+.+. ...+..+.. .++|+++|+||+|+..
T Consensus 78 ~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 133 (184)
T 3ihw_A 78 PELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISA 133 (184)
T ss_dssp CCHH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBT
T ss_pred hhhh-----eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 9987 7888999999999998765555 333333333 4789999999999863
No 138
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.30 E-value=5.3e-12 Score=132.35 Aligned_cols=120 Identities=15% Similarity=0.215 Sum_probs=76.4
Q ss_pred CCCCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCC
Q 047363 5 DTRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGH 84 (876)
Q Consensus 5 ~~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh 84 (876)
.....++|+++|++|+|||||+++|++. ....+ .....++|.......+.+.+..++||||||+
T Consensus 25 ~~~~~~~i~lvG~~g~GKStlin~l~g~--~~~~~--------------~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~ 88 (239)
T 3lxx_A 25 PRNSQLRIVLVGKTGAGKSATGNSILGR--KVFHS--------------GTAAKSITKKCEKRSSSWKETELVVVDTPGI 88 (239)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHTS--CCSCC---------------------CCSCEEEEEEETTEEEEEEECCSC
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHcCC--CcCcc--------------CCCCCceeeeEEEEEEEeCCceEEEEECCCc
Confidence 3456789999999999999999999865 21110 0112245666666677888999999999997
Q ss_pred ccc-------hHHHHHH----HHhcCeEEEEEcCCCccccchHHHHHHhh-----hhcCCcEEEEeccccccc
Q 047363 85 MDF-------CSEVSTA----ARLSDGALVLVDAVEGVHIQTHAVLRQSW-----IEKLTPCLVLNKIDRLIS 141 (876)
Q Consensus 85 ~dF-------~~e~~~a----l~~aDgaIlVvDa~egv~~~t~~~l~~~~-----~~~ip~ilviNKiD~~~~ 141 (876)
.+. ..++... .+.+|++|+|+|+.. ........+..+. ....|+++|+||+|++..
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~-~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~ 160 (239)
T 3lxx_A 89 FDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGR-YTEEEHKATEKILKMFGERARSFMILIFTRKDDLGD 160 (239)
T ss_dssp C-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTC-CSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC--
T ss_pred cCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCC-CCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCc
Confidence 753 2233333 344699999999874 3333333333332 244699999999999753
No 139
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.30 E-value=1.2e-12 Score=129.74 Aligned_cols=118 Identities=12% Similarity=0.076 Sum_probs=74.9
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCcc
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMD 86 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~d 86 (876)
.+..+|+++|+.|+|||||+++|+.. . ........+ +.... ..+.+....+.+.||||||+.+
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~--~--~~~~~~~t~------------~~~~~-~~~~~~~~~~~~~i~Dt~G~~~ 68 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSN--T--FPTDYVPTV------------FDNFS-ANVVVNGATVNLGLWDTAGQED 68 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHS--C--CC----------------------CB-CCCC-------CEEECCCC-CT
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcC--C--CCCCCCCee------------eeeEE-EEEEECCEEEEEEEEECCCChh
Confidence 34578999999999999999999876 2 110000000 00000 0011223346788999999999
Q ss_pred chHHHHHHHHhcCeEEEEEcCCCccccchHH-HH-HHhhh--hcCCcEEEEeccccccc
Q 047363 87 FCSEVSTAARLSDGALVLVDAVEGVHIQTHA-VL-RQSWI--EKLTPCLVLNKIDRLIS 141 (876)
Q Consensus 87 F~~e~~~al~~aDgaIlVvDa~egv~~~t~~-~l-~~~~~--~~ip~ilviNKiD~~~~ 141 (876)
|......+++.+|++|+|+|+.+........ .| ..+.. .++|+++|+||+|+...
T Consensus 69 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 127 (182)
T 3bwd_D 69 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDD 127 (182)
T ss_dssp TTTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTC
T ss_pred hhhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcC
Confidence 9888888999999999999998765544332 23 33333 27899999999998753
No 140
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.30 E-value=1.9e-12 Score=132.16 Aligned_cols=118 Identities=15% Similarity=0.053 Sum_probs=80.6
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCcc
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMD 86 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~d 86 (876)
.+..+|+++|+.|+|||||+++|+.....+.. ...+ +.. ....+.+....+.++||||||+.+
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~----~~t~------------~~~-~~~~~~~~~~~~~l~i~Dt~G~~~ 90 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEY----IPTV------------FDN-YSANVMVDGKPVNLGLWDTAGLED 90 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCCC-C----CCCS------------EEE-EEEEEECC-CEEEEEEEEECCSGG
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCc----CCee------------cce-eEEEEEECCEEEEEEEEECCCchh
Confidence 34578999999999999999999876111100 0000 000 111122223346677999999999
Q ss_pred chHHHHHHHHhcCeEEEEEcCCCccccchHH--HHHHhhhh--cCCcEEEEeccccccc
Q 047363 87 FCSEVSTAARLSDGALVLVDAVEGVHIQTHA--VLRQSWIE--KLTPCLVLNKIDRLIS 141 (876)
Q Consensus 87 F~~e~~~al~~aDgaIlVvDa~egv~~~t~~--~l~~~~~~--~ip~ilviNKiD~~~~ 141 (876)
|......+++.+|++|+|+|+.+........ .+..+... ++|+++|+||+|+...
T Consensus 91 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 149 (204)
T 4gzl_A 91 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 149 (204)
T ss_dssp GTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTC
T ss_pred hHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccc
Confidence 9888888999999999999999876655442 33333433 7999999999999754
No 141
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.29 E-value=1.3e-12 Score=132.38 Aligned_cols=116 Identities=14% Similarity=0.129 Sum_probs=59.4
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEc----CeEEEEEcCCCC
Q 047363 9 IRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYK----DYAINLIDSPGH 84 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~----~~~inlIDTPGh 84 (876)
..+|+++|+.|+|||||+++|+.. ....... .. ...|.+... ..+.+. .+.+.||||||+
T Consensus 20 ~~~i~v~G~~~~GKssli~~l~~~--~~~~~~~----------~~--~t~~~~~~~--~~~~~~~~~~~~~~~l~Dt~G~ 83 (208)
T 2yc2_C 20 RCKVAVVGEATVGKSALISMFTSK--GSKFLKD----------YA--MTSGVEVVV--APVTIPDTTVSVELFLLDTAGS 83 (208)
T ss_dssp EEEEEEC------------------------------------------------C--EEEECTTSSEEEEEEEEETTTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC--CCcccCC----------CC--CccceEEEE--EEEEECCcccEEEEEEEECCCc
Confidence 368999999999999999999765 1111100 00 011111111 233344 468999999999
Q ss_pred ccchHHHHHHHHhcCeEEEEEcCCCccccchHH-HHHHhhh------hcCCcEEEEecccccc
Q 047363 85 MDFCSEVSTAARLSDGALVLVDAVEGVHIQTHA-VLRQSWI------EKLTPCLVLNKIDRLI 140 (876)
Q Consensus 85 ~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~-~l~~~~~------~~ip~ilviNKiD~~~ 140 (876)
.+|......+++.+|++|+|+|+.+........ .+..+.. .++|+++|+||+|+..
T Consensus 84 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 146 (208)
T 2yc2_C 84 DLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPP 146 (208)
T ss_dssp HHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC----
T ss_pred HHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccch
Confidence 999988888999999999999998776543333 2333332 4789999999999975
No 142
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.29 E-value=5.1e-12 Score=126.89 Aligned_cols=129 Identities=18% Similarity=0.237 Sum_probs=83.0
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCcc
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMD 86 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~d 86 (876)
....+|+++|+.|+|||||+++|+.. .-.. ..... ..+++ ..+....+.+|||||+.+
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~--~~~~--------~~~~~-----~~~~~-------~~~~~~~~~l~Dt~G~~~ 103 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTD--SVRP--------TVVSQ-----EPLSA-------ADYDGSGVTLVDFPGHVK 103 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHS--SCC--------------------------------CCCCTTCSEEEETTCCB
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC--CCCc--------ccccC-----CCcee-------eeecCCeEEEEECCCCch
Confidence 45679999999999999999999876 2100 00000 00111 112567899999999999
Q ss_pred chHHHHHHHHh----cCeEEEEEcCC-Cccccch-HHHHHHhh-------hhcCCcEEEEecccccccccccChHHHHHH
Q 047363 87 FCSEVSTAARL----SDGALVLVDAV-EGVHIQT-HAVLRQSW-------IEKLTPCLVLNKIDRLISELKLTPLEAYNR 153 (876)
Q Consensus 87 F~~e~~~al~~----aDgaIlVvDa~-egv~~~t-~~~l~~~~-------~~~ip~ilviNKiD~~~~e~~~~~~~~~~~ 153 (876)
|.......++. +|++|+|+|+. ....... ...+.... ..++|+++|+||+|+.... ..+++...
T Consensus 104 ~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~---~~~~~~~~ 180 (193)
T 2ged_A 104 LRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR---PPSKIKDA 180 (193)
T ss_dssp SSCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC---CHHHHHHH
T ss_pred HHHHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCC---CHHHHHHH
Confidence 97777777766 89999999998 3222111 12222221 1379999999999997643 35566666
Q ss_pred HHHHHHH
Q 047363 154 LLRIVHE 160 (876)
Q Consensus 154 l~~~l~~ 160 (876)
+...+..
T Consensus 181 l~~~l~~ 187 (193)
T 2ged_A 181 LESEIQK 187 (193)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6555544
No 143
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.29 E-value=6e-12 Score=129.70 Aligned_cols=117 Identities=13% Similarity=0.037 Sum_probs=81.1
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCcc
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMD 86 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~d 86 (876)
....+|+|+|..|+|||||+++|+......... . ..+.+. ...+.+....+.+.||||||+.+
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~----~------------t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~ 87 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCYPETYV----P------------TVFENY-TACLETEEQRVELSLWDTSGSPY 87 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCCSSCC----C------------CSEEEE-EEEEEC--CEEEEEEEEECCSGG
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCcC----C------------eeeeeE-EEEEEECCEEEEEEEEECCCCHh
Confidence 345789999999999999999998761110000 0 011222 12233444567899999999999
Q ss_pred chHHHHHHHHhcCeEEEEEcCCCccccch-HHHH-HHhhhh--cCCcEEEEecccccc
Q 047363 87 FCSEVSTAARLSDGALVLVDAVEGVHIQT-HAVL-RQSWIE--KLTPCLVLNKIDRLI 140 (876)
Q Consensus 87 F~~e~~~al~~aDgaIlVvDa~egv~~~t-~~~l-~~~~~~--~ip~ilviNKiD~~~ 140 (876)
|......+++.+|++|+|+|+.+..+... ...| ..+... ++|++||+||+|+..
T Consensus 88 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 145 (214)
T 3q3j_B 88 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRT 145 (214)
T ss_dssp GTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGG
T ss_pred HHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcc
Confidence 98888889999999999999987655443 2233 333333 789999999999975
No 144
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.29 E-value=1.4e-12 Score=129.65 Aligned_cols=113 Identities=19% Similarity=0.150 Sum_probs=78.4
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCcc
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMD 86 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~d 86 (876)
.+..+|+++|+.|+|||||+++|+.. ... .+. ...|. ....+.+.+..+.++||||+.+
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~----~~~-------~~~------~t~~~----~~~~~~~~~~~~~i~Dt~G~~~ 74 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIG----EVV-------TTK------PTIGF----NVETLSYKNLKLNVWDLGGQTS 74 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCS----EEE-------EEC------SSTTC----CEEEEEETTEEEEEEEEC----
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC----CcC-------ccC------CcCcc----ceEEEEECCEEEEEEECCCCHh
Confidence 56789999999999999999999633 110 000 01122 2234556789999999999999
Q ss_pred chHHHHHHHHhcCeEEEEEcCCCccccch-HHHHHHhh----hhcCCcEEEEecccccc
Q 047363 87 FCSEVSTAARLSDGALVLVDAVEGVHIQT-HAVLRQSW----IEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 87 F~~e~~~al~~aDgaIlVvDa~egv~~~t-~~~l~~~~----~~~ip~ilviNKiD~~~ 140 (876)
|...+..+++.+|++|+|+|+.+...... ...+.... ..++|+++|+||+|+..
T Consensus 75 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 133 (183)
T 1moz_A 75 IRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPG 133 (183)
T ss_dssp CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTT
T ss_pred HHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCC
Confidence 98888888999999999999987644332 22333332 36789999999999975
No 145
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.29 E-value=1.5e-11 Score=123.61 Aligned_cols=116 Identities=15% Similarity=0.135 Sum_probs=75.2
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCcc
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMD 86 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~d 86 (876)
.+..+|+++|..|+|||||+++|+.. . ... .... ..+.+. ...+.+....+.+.||||||+.+
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~--~-~~~-~~~~------------t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~ 81 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTK--R-FIS-EYDP------------NLEDTY-SSEETVDHQPVHLRVMDTADLDT 81 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS--S-CCS-CCCT------------TCCEEE-EEEEEETTEEEEEEEEECCC---
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhC--C-CCc-ccCC------------Ccccee-eEEEEECCEEEEEEEEECCCCCc
Confidence 34578999999999999999999876 2 110 0000 011111 11122223357889999999998
Q ss_pred chHHHHHHHHhcCeEEEEEcCCCccccchHH-HHHHhhh------hcCCcEEEEecccccc
Q 047363 87 FCSEVSTAARLSDGALVLVDAVEGVHIQTHA-VLRQSWI------EKLTPCLVLNKIDRLI 140 (876)
Q Consensus 87 F~~e~~~al~~aDgaIlVvDa~egv~~~t~~-~l~~~~~------~~ip~ilviNKiD~~~ 140 (876)
|.. +...++.+|++|+|+|+.+........ .+..+.. .++|+++|+||+|+..
T Consensus 82 ~~~-~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 141 (187)
T 3c5c_A 82 PRN-CERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQ 141 (187)
T ss_dssp CCC-THHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGG
T ss_pred chh-HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhh
Confidence 865 467899999999999998755444332 2233322 4789999999999964
No 146
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.28 E-value=3.7e-12 Score=130.10 Aligned_cols=114 Identities=14% Similarity=0.040 Sum_probs=78.5
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEc--CeEEEEEcCCCCcc
Q 047363 9 IRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYK--DYAINLIDSPGHMD 86 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~--~~~inlIDTPGh~d 86 (876)
-.+|+++|+.|+|||||+++|+.. .-... +.+ ..+.+.. ..+... .+.+.||||||+.+
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~--~~~~~-----------~~~---t~~~~~~---~~~~~~~~~~~~~i~Dt~G~~~ 85 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKD--EFPEV-----------YVP---TVFENYV---ADIEVDGKQVELALWDTAGQED 85 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS--SCC---------------------CCEEE---EEEEETTEEEEEEEEECTTCTT
T ss_pred CcEEEEECcCCCCHHHHHHHHhcC--CCCCc-----------CCC---cccceEE---EEEEECCEEEEEEEEECCCcHH
Confidence 368999999999999999999876 21100 000 0011111 112233 36899999999999
Q ss_pred chHHHHHHHHhcCeEEEEEcCCCccccchH--HHHHHhhhh--cCCcEEEEeccccccc
Q 047363 87 FCSEVSTAARLSDGALVLVDAVEGVHIQTH--AVLRQSWIE--KLTPCLVLNKIDRLIS 141 (876)
Q Consensus 87 F~~e~~~al~~aDgaIlVvDa~egv~~~t~--~~l~~~~~~--~ip~ilviNKiD~~~~ 141 (876)
|......+++.+|++|+|+|+.+....... ..+..+... ++|+++|+||+|+...
T Consensus 86 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 144 (207)
T 2fv8_A 86 YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSD 144 (207)
T ss_dssp CTTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGC
T ss_pred HHHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhcc
Confidence 988888889999999999999875443332 233333333 7999999999999753
No 147
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.28 E-value=3.6e-12 Score=131.11 Aligned_cols=117 Identities=12% Similarity=0.034 Sum_probs=64.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccc
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDF 87 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF 87 (876)
+..+|+++|+.|+|||||+++|+.. . ........ .+... ...+.+....+.+.||||||+.+|
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~--~--~~~~~~~t------------~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~ 95 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADG--A--FPESYTPT------------VFERY-MVNLQVKGKPVHLHIWDTAGQDDY 95 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC-----------CCC------------CCEEE-EEEEEETTEEEEEEEEEC------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcC--C--CCCCCCCc------------cceeE-EEEEEECCEEEEEEEEECCCchhh
Confidence 4578999999999999999999754 1 11000000 01111 111122222457999999999999
Q ss_pred hHHHHHHHHhcCeEEEEEcCCCccccchHH--HHHHhhh--hcCCcEEEEeccccccc
Q 047363 88 CSEVSTAARLSDGALVLVDAVEGVHIQTHA--VLRQSWI--EKLTPCLVLNKIDRLIS 141 (876)
Q Consensus 88 ~~e~~~al~~aDgaIlVvDa~egv~~~t~~--~l~~~~~--~~ip~ilviNKiD~~~~ 141 (876)
.......++.+|++|+|+|+.+........ .+..+.. .++|+++|+||+|+...
T Consensus 96 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 153 (214)
T 2j1l_A 96 DRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKD 153 (214)
T ss_dssp ---------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSC
T ss_pred hHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhcc
Confidence 988889999999999999998765544332 2233322 37899999999999753
No 148
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.28 E-value=1.8e-12 Score=129.95 Aligned_cols=114 Identities=16% Similarity=0.110 Sum_probs=81.6
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCcc
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMD 86 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~d 86 (876)
.+..+|+++|+.|+|||||+++|... ... .+ . ...|.+ ...+.+.++.+++|||||+.+
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~----~~~-------~~---~---~t~~~~----~~~~~~~~~~~~~~Dt~G~~~ 78 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLG----DVV-------TT---V---PTVGVN----LETLQYKNISFEVWDLGGQTG 78 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCS----CCE-------EE---C---SSTTCC----EEEEEETTEEEEEEEECCSSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcC----CCC-------Cc---C---CCCceE----EEEEEECCEEEEEEECCCCHh
Confidence 35678999999999999999999533 111 00 0 011222 234556789999999999999
Q ss_pred chHHHHHHHHhcCeEEEEEcCCCccccch-HHHHHHhhh----hcCCcEEEEeccccccc
Q 047363 87 FCSEVSTAARLSDGALVLVDAVEGVHIQT-HAVLRQSWI----EKLTPCLVLNKIDRLIS 141 (876)
Q Consensus 87 F~~e~~~al~~aDgaIlVvDa~egv~~~t-~~~l~~~~~----~~ip~ilviNKiD~~~~ 141 (876)
|......+++.+|++|+|+|+.+...... ...+..... .++|+++|+||+|+...
T Consensus 79 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 138 (189)
T 2x77_A 79 VRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDA 138 (189)
T ss_dssp SCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTC
T ss_pred HHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCC
Confidence 98877788899999999999987644332 222333322 47899999999999753
No 149
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.28 E-value=6.2e-12 Score=127.30 Aligned_cols=117 Identities=15% Similarity=0.076 Sum_probs=77.8
Q ss_pred CCCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcC--eEEEEEcCCC
Q 047363 6 TRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKD--YAINLIDSPG 83 (876)
Q Consensus 6 ~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~--~~inlIDTPG 83 (876)
..+..+|+++|+.|+|||||+++|+.. . ........ .+... ...+.+.+ +.+.||||||
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~~--~--~~~~~~~t------------~~~~~---~~~~~~~~~~~~~~i~Dt~G 77 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTTN--G--YPTEYIPT------------AFDNF---SAVVSVDGRPVRLQLCDTAG 77 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC------------CC------------SSEEE---EEEEEETTEEEEEEEEECCC
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhC--C--CCCCCCCc------------cccee---EEEEEECCEEEEEEEEECCC
Confidence 345678999999999999999999855 1 11000000 01111 12233343 5788999999
Q ss_pred CccchHHHHHHHHhcCeEEEEEcCCCccccchHH--HHHHhhh--hcCCcEEEEeccccccc
Q 047363 84 HMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHA--VLRQSWI--EKLTPCLVLNKIDRLIS 141 (876)
Q Consensus 84 h~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~--~l~~~~~--~~ip~ilviNKiD~~~~ 141 (876)
+.+|.......++.+|++|+|+|+.+........ .+..+.. .++|+++|+||+|+...
T Consensus 78 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 139 (201)
T 2q3h_A 78 QDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLRED 139 (201)
T ss_dssp STTCSSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGC
T ss_pred CHHHHHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhc
Confidence 9999887778899999999999998765544432 2333333 27899999999999753
No 150
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.28 E-value=5.2e-12 Score=129.46 Aligned_cols=118 Identities=14% Similarity=0.039 Sum_probs=79.4
Q ss_pred CCCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCc
Q 047363 6 TRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHM 85 (876)
Q Consensus 6 ~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~ 85 (876)
.....+|+++|..|+|||||+++|+......... . ..+... ...+.+....+.+.||||||+.
T Consensus 25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~----~------------t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~ 87 (205)
T 1gwn_A 25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYV----P------------TVFENY-TASFEIDTQRIELSLWDTSGSP 87 (205)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCC----C------------CSEEEE-EEEEESSSSEEEEEEEEECCSG
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcC----C------------ccceeE-EEEEEECCEEEEEEEEeCCCcH
Confidence 3456789999999999999999998761110000 0 001111 1111222234789999999999
Q ss_pred cchHHHHHHHHhcCeEEEEEcCCCccccchH-HHH-HHhhh--hcCCcEEEEecccccc
Q 047363 86 DFCSEVSTAARLSDGALVLVDAVEGVHIQTH-AVL-RQSWI--EKLTPCLVLNKIDRLI 140 (876)
Q Consensus 86 dF~~e~~~al~~aDgaIlVvDa~egv~~~t~-~~l-~~~~~--~~ip~ilviNKiD~~~ 140 (876)
+|......+++.+|++|+|+|+.+..+.... ..| ..+.. .++|+++|+||+|+..
T Consensus 88 ~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 146 (205)
T 1gwn_A 88 YYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 146 (205)
T ss_dssp GGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGG
T ss_pred hhhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhcc
Confidence 9988778888999999999999876544332 223 33332 3789999999999974
No 151
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.28 E-value=3.9e-12 Score=136.65 Aligned_cols=112 Identities=19% Similarity=0.216 Sum_probs=79.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccc
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDF 87 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF 87 (876)
...+|+++|++|+|||||+++|++. ...+. + ..|+|+......+.+ +..+++|||||+.+|
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~--~~~v~----------~------~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~ 62 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGH--NQRVG----------N------WPGVTVERKSGLVKK-NKDLEIQDLPGIYSM 62 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCC--CCCCC----------S------SSCCCCSCEEEECTT-CTTEEEEECCCCSCS
T ss_pred CceEEEEECCCCCCHHHHHHHHHCC--CCccc----------C------CCCCcEEEEEEEEec-CCeEEEEECCCcCcc
Confidence 3578999999999999999999754 21111 1 125565554455544 678999999999988
Q ss_pred h------HHHHHHHH--hcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccc
Q 047363 88 C------SEVSTAAR--LSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 88 ~------~e~~~al~--~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~ 140 (876)
. ......++ .+|++|+|+|+.... ....++.++.+.++|+++|+||+|+..
T Consensus 63 ~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~e--~~~~~~~~l~~~~~p~ilv~NK~Dl~~ 121 (272)
T 3b1v_A 63 SPYSPEAKVARDYLLSQRADSILNVVDATNLE--RNLYLTTQLIETGIPVTIALNMIDVLD 121 (272)
T ss_dssp SCSSHHHHHHHHHHHTTCCSEEEEEEEGGGHH--HHHHHHHHHHHTCSCEEEEEECHHHHH
T ss_pred CCCChHHHHHHHHHhcCCCCEEEEEecCCchH--hHHHHHHHHHhcCCCEEEEEEChhhCC
Confidence 5 22344555 499999999997631 223344566678999999999999864
No 152
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.28 E-value=9.9e-12 Score=146.20 Aligned_cols=135 Identities=20% Similarity=0.196 Sum_probs=88.6
Q ss_pred CCCCceEEEEEeCCCCcHHHHHHHHHHhhCCC-CcccccCCcee---eccChh-------------hhhhcce-----ee
Q 047363 5 DTRKIRNISILAHVDHGKTTLADHLIAATGGG-LLHPKLAGKLR---FMDYLD-------------EEQRRAI-----TM 62 (876)
Q Consensus 5 ~~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g-~i~~~~~g~~~---~~d~~~-------------~E~~rgi-----ti 62 (876)
.......|+|+|++|+|||||+++|++....+ .++.. ..+.+ +..... .+.-+++ ..
T Consensus 61 ~~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~-p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~ 139 (550)
T 2qpt_A 61 DFDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPE-PTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTF 139 (550)
T ss_dssp TTSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSS-CCCCSEEEEECCSSSEEECCC------------------CC
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCC-CccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccc
Confidence 34567899999999999999999999872211 11111 11100 000000 0000000 00
Q ss_pred eeeEEEEEEcC---eEEEEEcCCCCcc-----------chHHHHHHHHhcCeEEEEEcCCC-ccccchHHHHHHhhhhcC
Q 047363 63 KSSSIALHYKD---YAINLIDSPGHMD-----------FCSEVSTAARLSDGALVLVDAVE-GVHIQTHAVLRQSWIEKL 127 (876)
Q Consensus 63 ~~~~i~~~~~~---~~inlIDTPGh~d-----------F~~e~~~al~~aDgaIlVvDa~e-gv~~~t~~~l~~~~~~~i 127 (876)
....+.+.+.+ ..++||||||+.+ |...+..+++.+|++|+|+|+.. +...+...+++.+...+.
T Consensus 140 ~~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~ 219 (550)
T 2qpt_A 140 LNRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHED 219 (550)
T ss_dssp CTTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGG
T ss_pred cccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCC
Confidence 01112222222 4699999999986 77788889999999999999987 566677778888888889
Q ss_pred CcEEEEecccccc
Q 047363 128 TPCLVLNKIDRLI 140 (876)
Q Consensus 128 p~ilviNKiD~~~ 140 (876)
|+++|+||+|+..
T Consensus 220 pvilVlNK~Dl~~ 232 (550)
T 2qpt_A 220 KIRVVLNKADMVE 232 (550)
T ss_dssp GEEEEEECGGGSC
T ss_pred CEEEEEECCCccC
Confidence 9999999999975
No 153
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.28 E-value=2.7e-12 Score=148.29 Aligned_cols=113 Identities=18% Similarity=0.112 Sum_probs=68.5
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccchH
Q 047363 10 RNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFCS 89 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~~ 89 (876)
.+|+|+|++|+|||||+++|++. ...+. +...|+|.......+.+.++.++||||||+.++..
T Consensus 234 ~kV~ivG~~nvGKSSLln~L~~~--~~a~v---------------s~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~ 296 (476)
T 3gee_A 234 VSTVIAGKPNAGKSTLLNTLLGQ--ERAIV---------------SHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGE 296 (476)
T ss_dssp EEEEEECCTTSSHHHHHHHCC-----------------------------------CEEEEETTEEEEEEC---------
T ss_pred CEEEEECCCCCCHHHHHHHHhCC--CCccc---------------CCCCCceEEEEEEEEEECCeEEEEEECCCCCcchh
Confidence 35999999999999999999765 21111 11124455554556677889999999999988765
Q ss_pred HH--------HHHHHhcCeEEEEEcCCCcccc----chHHHHHHhhhhcCCcEEEEeccccccc
Q 047363 90 EV--------STAARLSDGALVLVDAVEGVHI----QTHAVLRQSWIEKLTPCLVLNKIDRLIS 141 (876)
Q Consensus 90 e~--------~~al~~aDgaIlVvDa~egv~~----~t~~~l~~~~~~~ip~ilviNKiD~~~~ 141 (876)
.+ ..+++.+|++|+|+|+.++... ....++..+. ++|+++|+||+|+...
T Consensus 297 ~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~ 358 (476)
T 3gee_A 297 EIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAAN 358 (476)
T ss_dssp -----------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTT
T ss_pred HHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCCCc
Confidence 43 3357889999999999988776 3344444443 7899999999999754
No 154
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.27 E-value=1.8e-11 Score=127.07 Aligned_cols=128 Identities=20% Similarity=0.156 Sum_probs=84.5
Q ss_pred CCCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCc
Q 047363 6 TRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHM 85 (876)
Q Consensus 6 ~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~ 85 (876)
|.+-..|+|+|..|+|||||+.+++........ ...-|.......+.+....+.++||||+|+.
T Consensus 10 P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~----------------~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe 73 (216)
T 4dkx_A 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTY----------------QATIGIDFLSKTMYLEDRTIRLQLWDTAGLE 73 (216)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCC--------------------------CEEEEEECSSCEEEEEEECCSCTT
T ss_pred CCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCc----------------CCccceEEEEEEEEecceEEEEEEEECCCch
Confidence 334468999999999999999999876211100 0011222222223333335788999999999
Q ss_pred cchHHHHHHHHhcCeEEEEEcCCCccccchHHHH-HHhh---hhcCCcEEEEecccccccccccChHHH
Q 047363 86 DFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVL-RQSW---IEKLTPCLVLNKIDRLISELKLTPLEA 150 (876)
Q Consensus 86 dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l-~~~~---~~~ip~ilviNKiD~~~~e~~~~~~~~ 150 (876)
+|.......++.+|++|+|+|.....+.....-| ..+. ..++|++||.||+|+... ...+.+++
T Consensus 74 ~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~-r~V~~~e~ 141 (216)
T 4dkx_A 74 RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK-RQVSIEEG 141 (216)
T ss_dssp TCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGG-CCSCHHHH
T ss_pred hhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhc-CcccHHHH
Confidence 9999999999999999999999876655443333 2222 346899999999998753 23444444
No 155
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.27 E-value=1.4e-11 Score=127.94 Aligned_cols=117 Identities=16% Similarity=0.180 Sum_probs=77.9
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCcc
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMD 86 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~d 86 (876)
.+..+|+++|.+|+|||||+++|+.. . .. ..+ ..+.|.......+.+.+..+.||||||+.+
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~--~--~~--------~~~------~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~ 88 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRA--N--VD--------VQS------YSFTTKNLYVGHFDHKLNKYQIIDTPGLLD 88 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTT--C--EE--------EEC------C-----CEEEEEEEETTEEEEEEECTTTTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC--C--Cc--------cCC------CCCcceeeeeeeeecCCCeEEEEECCCCcC
Confidence 45689999999999999999999754 1 10 000 112233333344556778999999999943
Q ss_pred c---------hHHHHHHHHhcCeEEEEEcCCCccccchH---HHHHHhhhh--cCCcEEEEeccccccc
Q 047363 87 F---------CSEVSTAARLSDGALVLVDAVEGVHIQTH---AVLRQSWIE--KLTPCLVLNKIDRLIS 141 (876)
Q Consensus 87 F---------~~e~~~al~~aDgaIlVvDa~egv~~~t~---~~l~~~~~~--~ip~ilviNKiD~~~~ 141 (876)
+ ........+.+|++|+|+|+.+..+.... ..+..+... ++|+++|+||+|+...
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 157 (228)
T 2qu8_A 89 RAFENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNM 157 (228)
T ss_dssp SCGGGCCHHHHHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC-
T ss_pred cccchhhhHHHHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCc
Confidence 2 11223446778999999999887654422 344444443 8999999999999753
No 156
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.27 E-value=3.7e-12 Score=129.50 Aligned_cols=116 Identities=16% Similarity=-0.001 Sum_probs=79.2
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccch
Q 047363 9 IRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFC 88 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~ 88 (876)
..+|+++|+.|+|||||+++|... .-... . .. + .+.... ..+.+....+.+.||||||+.+|.
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~--~~~~~-~-~~--t----------~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~ 87 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKD--QFPEV-Y-VP--T----------VFENYI-ADIEVDGKQVELALWDTAGQEDYD 87 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS--SCCSS-C-CC--S----------SCCCCE-EEEEETTEEEEEEEECCCCSGGGT
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC--cCCcc-c-CC--c----------ccceEE-EEEEECCEEEEEEEEECCCchhHH
Confidence 468999999999999999999876 21100 0 00 0 011111 112222223689999999999998
Q ss_pred HHHHHHHHhcCeEEEEEcCCCccccchH--HHHHHhhhh--cCCcEEEEeccccccc
Q 047363 89 SEVSTAARLSDGALVLVDAVEGVHIQTH--AVLRQSWIE--KLTPCLVLNKIDRLIS 141 (876)
Q Consensus 89 ~e~~~al~~aDgaIlVvDa~egv~~~t~--~~l~~~~~~--~ip~ilviNKiD~~~~ 141 (876)
.....+++.+|++|+|+|+.+....... ..+..+... ++|+++|+||+|+...
T Consensus 88 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 144 (201)
T 2gco_A 88 RLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQD 144 (201)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTC
T ss_pred HHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcC
Confidence 8888889999999999999875443332 233333333 7999999999999753
No 157
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.27 E-value=3.7e-12 Score=130.20 Aligned_cols=117 Identities=14% Similarity=0.043 Sum_probs=78.9
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCcc
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMD 86 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~d 86 (876)
....+|+++|+.|+|||||+++|+.. .- ....... .+... ...+.+....+.+.||||||+.+
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~--~~--~~~~~~t------------~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~ 69 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSN--KF--PTDYIPT------------VFDNF-SANVAVDGQIVNLGLWDTAGQED 69 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHS--CC--CSSCCCS------------SCCCE-EEEEECSSCEEEEEEECCCCCCC
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcC--CC--CccCCCc------------cceeE-EEEEEECCEEEEEEEEECCCcHH
Confidence 35578999999999999999999865 21 1000000 01111 11122222346899999999999
Q ss_pred chHHHHHHHHhcCeEEEEEcCCCccccchH--HHHHHhhhh--cCCcEEEEecccccc
Q 047363 87 FCSEVSTAARLSDGALVLVDAVEGVHIQTH--AVLRQSWIE--KLTPCLVLNKIDRLI 140 (876)
Q Consensus 87 F~~e~~~al~~aDgaIlVvDa~egv~~~t~--~~l~~~~~~--~ip~ilviNKiD~~~ 140 (876)
|......+++.+|++|+|+|+.+....... ..+..+... ++|+++|+||+|+..
T Consensus 70 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 127 (212)
T 2j0v_A 70 YSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRD 127 (212)
T ss_dssp CCC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHT
T ss_pred HHHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhh
Confidence 988888899999999999999876554432 233333333 789999999999864
No 158
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.26 E-value=1.8e-11 Score=124.28 Aligned_cols=119 Identities=16% Similarity=0.099 Sum_probs=76.8
Q ss_pred CCCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCc
Q 047363 6 TRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHM 85 (876)
Q Consensus 6 ~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~ 85 (876)
.....+|+++|.+|+|||||+++|++. .+..... ...+.+.....+.+....+.+.+|||||+.
T Consensus 20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~--~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~ 83 (195)
T 3cbq_A 20 KDGIFKVMLVGESGVGKSTLAGTFGGL--QGDSAHE--------------PENPEDTYERRIMVDKEEVTLVVYDIWEQG 83 (195)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHTCCE--ECCGGGT--------------TTSCTTEEEEEEEETTEEEEEEEECCCCCS
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHhc--cCCccCC--------------CCcccceEEEEEEECCEEEEEEEEecCCCc
Confidence 345689999999999999999999643 1111100 000111111222222224678899999999
Q ss_pred cchH-HHHHHHHhcCeEEEEEcCCCccccchHH-HHHHhhh----hcCCcEEEEecccccc
Q 047363 86 DFCS-EVSTAARLSDGALVLVDAVEGVHIQTHA-VLRQSWI----EKLTPCLVLNKIDRLI 140 (876)
Q Consensus 86 dF~~-e~~~al~~aDgaIlVvDa~egv~~~t~~-~l~~~~~----~~ip~ilviNKiD~~~ 140 (876)
+|.. .....++.+|++|+|+|+.+..+..... .+..+.. .++|+++|+||+|+..
T Consensus 84 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 144 (195)
T 3cbq_A 84 DAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLAR 144 (195)
T ss_dssp GGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTT
T ss_pred cchhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccc
Confidence 8865 5566788999999999998755433322 2333332 3789999999999974
No 159
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.26 E-value=2.5e-12 Score=132.08 Aligned_cols=116 Identities=15% Similarity=0.150 Sum_probs=79.6
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEc--C-eEEEEEcCCC
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYK--D-YAINLIDSPG 83 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~--~-~~inlIDTPG 83 (876)
....+|+|+|+.|+|||||+++|+.. . ... . +. ...+.+.. ...+... . +.++||||||
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~--~--~~~----~--~~------~t~~~~~~--~~~~~~~~~~~~~~~l~Dt~G 70 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDG--R--FEK----N--YN------ATVGAVNH--PVTFLDDQGNVIKFNVWDTAG 70 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTC--S--TTC----E--EE------TTTTEEEE--EEEEEBTTSCEEEEEEEEECS
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcC--C--CCC----C--CC------CccceeeE--EEEEEeCCCcEEEEEEEecCC
Confidence 45679999999999999999999744 1 100 0 00 01122211 1122221 1 6799999999
Q ss_pred CccchHHHHHHHHhcCeEEEEEcCCCccccchHHHH-HHh---hhhcCCcEEEEecccccc
Q 047363 84 HMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVL-RQS---WIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 84 h~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l-~~~---~~~~ip~ilviNKiD~~~ 140 (876)
+.+|.......++.+|++|+|+|+.++...+....| ..+ ...++|+++|+||+|+..
T Consensus 71 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 131 (218)
T 4djt_A 71 QEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKN 131 (218)
T ss_dssp GGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC-
T ss_pred chhhchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence 999988888899999999999999987765554332 222 233689999999999864
No 160
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.26 E-value=1.5e-11 Score=131.86 Aligned_cols=121 Identities=14% Similarity=0.218 Sum_probs=76.9
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcC--eEEEEEcCCCCcc
Q 047363 9 IRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKD--YAINLIDSPGHMD 86 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~--~~inlIDTPGh~d 86 (876)
..+|+++|++|+|||||+++|+.. ........ + .......++++......+.+.+ ..++||||||+.+
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~~~--~~~~~~~~-~-------~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d 77 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLFLT--DLYSPEYP-G-------PSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGD 77 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHSSS--CC-----------------------CCCEEEEEEECC--CCEEEEEEECCCCSC
T ss_pred EEEEEEECCCCCCHHHHHHHHhCC--CccccCCC-C-------cccccCCceEEEEEEEEEecCCeEEEEEEEECCCccc
Confidence 478999999999999999999654 21111000 0 0001122334444444444444 5899999999855
Q ss_pred ch-------HHH-------HHHHHh-------------cCeEEEEEcCC-CccccchHHHHHHhhhhcCCcEEEEecccc
Q 047363 87 FC-------SEV-------STAARL-------------SDGALVLVDAV-EGVHIQTHAVLRQSWIEKLTPCLVLNKIDR 138 (876)
Q Consensus 87 F~-------~e~-------~~al~~-------------aDgaIlVvDa~-egv~~~t~~~l~~~~~~~ip~ilviNKiD~ 138 (876)
+. ..+ ..+++. +|+++++++.. .+.......+++.+.. ++|+|+|+||+|+
T Consensus 78 ~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~-~~pvi~V~nK~D~ 156 (274)
T 3t5d_A 78 AVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAKADT 156 (274)
T ss_dssp CSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT-TSCEEEEESSGGG
T ss_pred cccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc-cCCEEEEEeccCC
Confidence 42 111 444444 67888888665 4777777888888776 8999999999998
Q ss_pred cc
Q 047363 139 LI 140 (876)
Q Consensus 139 ~~ 140 (876)
..
T Consensus 157 ~~ 158 (274)
T 3t5d_A 157 LT 158 (274)
T ss_dssp SC
T ss_pred CC
Confidence 74
No 161
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.25 E-value=5.7e-13 Score=135.17 Aligned_cols=116 Identities=16% Similarity=0.166 Sum_probs=78.0
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcC--eEEEEEcCCCC
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKD--YAINLIDSPGH 84 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~--~~inlIDTPGh 84 (876)
+...+|+|+|+.|+|||||+++|+.. . .. .+....++.......+.+.+ +.++||||||+
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~--~--~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 92 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADD--T--YT--------------ESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 92 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCC--C--CC--------------CHHHHHHCCSEEEEEEEETTEEEEEEEECCTTC
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcC--C--CC--------------CCcCCcccceEEEEEEEECCEEEEEEEEECCCc
Confidence 45689999999999999999988643 1 00 01111222223333444444 68999999999
Q ss_pred ccchHHHHHHHHhcCeEEEEEcCCCccccchHHHH-HHhhh---hcCCcEEEEecccccc
Q 047363 85 MDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVL-RQSWI---EKLTPCLVLNKIDRLI 140 (876)
Q Consensus 85 ~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l-~~~~~---~~ip~ilviNKiD~~~ 140 (876)
.+|.......++.+|++|+|+|+.+.........| ..+.. .++|+++|+||+|+..
T Consensus 93 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~ 152 (199)
T 3l0i_B 93 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTT 152 (199)
T ss_dssp TTCCCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC-
T ss_pred HhHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCc
Confidence 99988888899999999999999986654443333 23322 3789999999999864
No 162
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.24 E-value=6.3e-12 Score=138.75 Aligned_cols=112 Identities=16% Similarity=0.107 Sum_probs=77.6
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccch
Q 047363 9 IRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFC 88 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~ 88 (876)
..+|+|+|++|+|||||+++|+.. . +. ... -|+......+.+.++.++||||||+.+|.
T Consensus 165 ~~kI~ivG~~~vGKSsLl~~l~~~--~--~~----------~~~-------pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~ 223 (329)
T 3o47_A 165 EMRILMVGLDAAGKTTILYKLKLG--E--IV----------TTI-------PTIGFNVETVEYKNISFTVWDVGGQDKIR 223 (329)
T ss_dssp SEEEEEEESTTSSHHHHHHHTCSS--C--CE----------EEE-------EETTEEEEEEEETTEEEEEEECC-----C
T ss_pred cceEEEECCCCccHHHHHHHHhCC--C--CC----------Ccc-------cccceEEEEEecCcEEEEEEECCCCHhHH
Confidence 348999999999999999999643 1 11 000 13333345677789999999999999999
Q ss_pred HHHHHHHHhcCeEEEEEcCCCccccchH-HHHH-Hhhh---hcCCcEEEEeccccccc
Q 047363 89 SEVSTAARLSDGALVLVDAVEGVHIQTH-AVLR-QSWI---EKLTPCLVLNKIDRLIS 141 (876)
Q Consensus 89 ~e~~~al~~aDgaIlVvDa~egv~~~t~-~~l~-~~~~---~~ip~ilviNKiD~~~~ 141 (876)
.....+++.+|++|+|+|+.+....... ..+. .... .++|+++|+||+|+...
T Consensus 224 ~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~ 281 (329)
T 3o47_A 224 PLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 281 (329)
T ss_dssp CSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred HHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcc
Confidence 9999999999999999999765443222 2222 2222 37899999999999754
No 163
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.24 E-value=1.5e-11 Score=121.67 Aligned_cols=109 Identities=13% Similarity=0.124 Sum_probs=73.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccc
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDF 87 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF 87 (876)
+..+|+++|..|+|||||+++|+...... .. + ..+... ...+.+......+++|||||+.+
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~-------------~---t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~- 66 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTGSYQV-LE-------------K---TESEQY-KKEMLVDGQTHLVLIREEAGAPD- 66 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHSCCCC-CS-------------S---CSSSEE-EEEEEETTEEEEEEEEECSSSCC-
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCC-cC-------------C---CcceeE-EEEEEECCEEEEEEEEECCCCch-
Confidence 45789999999999999999998761110 00 0 001111 11122222246789999999987
Q ss_pred hHHHHHHHHhcCeEEEEEcCCCccccchHHHHH-Hhhh------hcCCcEEEEeccccc
Q 047363 88 CSEVSTAARLSDGALVLVDAVEGVHIQTHAVLR-QSWI------EKLTPCLVLNKIDRL 139 (876)
Q Consensus 88 ~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~-~~~~------~~ip~ilviNKiD~~ 139 (876)
...++.+|++|+|+|+.+..+......|. ++.. .++|+++|+||+|+.
T Consensus 67 ----~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 121 (178)
T 2iwr_A 67 ----AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS 121 (178)
T ss_dssp ----HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCB
T ss_pred ----hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 45788899999999998766554443322 2222 368999999999985
No 164
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.22 E-value=5e-12 Score=145.52 Aligned_cols=113 Identities=21% Similarity=0.262 Sum_probs=73.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccchH
Q 047363 10 RNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFCS 89 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~~ 89 (876)
.+|+|+|++|+|||||+++|++. ...+..... |+|.......+.++++.++||||||+.++..
T Consensus 225 ~kV~ivG~~nvGKSSLln~L~~~--~~a~v~~~~---------------gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~ 287 (462)
T 3geh_A 225 LKVAIVGRPNVGKSSLLNAWSQS--DRAIVTDLP---------------GTTRDVVESQLVVGGIPVQVLDTAGIRETSD 287 (462)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH--HBSCCSCCT---------------TCCHHHHHHEEEETTEEEEECC---------
T ss_pred CEEEEEcCCCCCHHHHHHHHhCC--CcccccCCC---------------CeeEEEEEEEEEECCEEEEEEECCccccchh
Confidence 36999999999999999999987 322211111 1222222223455788999999999988754
Q ss_pred HHHH--------HHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEeccccccc
Q 047363 90 EVST--------AARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLIS 141 (876)
Q Consensus 90 e~~~--------al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~~ 141 (876)
.+.. +++.+|++|+|+|+.++.......+++.+.. .|+++|+||+|+...
T Consensus 288 ~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~~--~piivV~NK~Dl~~~ 345 (462)
T 3geh_A 288 QVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVKH--RPLILVMNKIDLVEK 345 (462)
T ss_dssp -----------CCCCSCSEEEEEEETTTCSCHHHHHHHHHHTT--SCEEEEEECTTSSCG
T ss_pred HHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhccC--CcEEEEEECCCCCcc
Confidence 4333 5678999999999999887777777766543 799999999999753
No 165
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.22 E-value=7e-11 Score=127.49 Aligned_cols=134 Identities=11% Similarity=0.148 Sum_probs=87.0
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCC----CcccccCCceee------------------ccChh--hh------h
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGG----LLHPKLAGKLRF------------------MDYLD--EE------Q 56 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g----~i~~~~~g~~~~------------------~d~~~--~E------~ 56 (876)
.....|+|+|.+|+|||||+++|++..... ..+. ..+.+++ ++... .+ .
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~-~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~ 102 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTR-RPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR 102 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCS-SCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccc-cceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHH
Confidence 356789999999999999999998762110 1111 1111111 11110 00 0
Q ss_pred ----hcceeeeeeEEEEEEc-CeEEEEEcCCCCc-------------cchHHHHHHHHhcCeEE-EEEcCCCccccchH-
Q 047363 57 ----RRAITMKSSSIALHYK-DYAINLIDSPGHM-------------DFCSEVSTAARLSDGAL-VLVDAVEGVHIQTH- 116 (876)
Q Consensus 57 ----~rgiti~~~~i~~~~~-~~~inlIDTPGh~-------------dF~~e~~~al~~aDgaI-lVvDa~egv~~~t~- 116 (876)
..|++.....+.+... ...+.||||||+. .+...+..+++.++.+| +|+|+..+...+..
T Consensus 103 i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~ 182 (299)
T 2aka_B 103 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 182 (299)
T ss_dssp HCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHH
T ss_pred hcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHH
Confidence 1344333333333333 4789999999974 34556778888888877 68999988777664
Q ss_pred HHHHHhhhhcCCcEEEEeccccccc
Q 047363 117 AVLRQSWIEKLTPCLVLNKIDRLIS 141 (876)
Q Consensus 117 ~~l~~~~~~~ip~ilviNKiD~~~~ 141 (876)
.+++.+...++|+++|+||+|+...
T Consensus 183 ~~~~~~~~~~~~~i~V~NK~Dl~~~ 207 (299)
T 2aka_B 183 KIAKEVDPQGQRTIGVITKLDLMDE 207 (299)
T ss_dssp HHHHHHCTTCSSEEEEEECGGGSCT
T ss_pred HHHHHhCCCCCeEEEEEEccccCCC
Confidence 4677777778999999999999753
No 166
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=98.83 E-value=1.5e-12 Score=132.47 Aligned_cols=118 Identities=14% Similarity=0.071 Sum_probs=80.9
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCcc
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMD 86 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~d 86 (876)
.+..+|+++|+.|+|||||+++|+.. . ....... +. +... ...+.+....+.+.+|||||+.+
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~--~--~~~~~~~--t~----------~~~~-~~~~~~~~~~~~l~i~Dt~G~~~ 90 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTN--A--FPGEYIP--TV----------FDNY-SANVMVDGKPVNLGLWDTAGQED 90 (204)
Confidence 34578999999999999999999755 1 1100000 00 0000 11122333456788999999999
Q ss_pred chHHHHHHHHhcCeEEEEEcCCCccccchHH--HHHHhhhh--cCCcEEEEeccccccc
Q 047363 87 FCSEVSTAARLSDGALVLVDAVEGVHIQTHA--VLRQSWIE--KLTPCLVLNKIDRLIS 141 (876)
Q Consensus 87 F~~e~~~al~~aDgaIlVvDa~egv~~~t~~--~l~~~~~~--~ip~ilviNKiD~~~~ 141 (876)
|......+++.+|++|+|+|+.+........ .+..+... ++|+++|+||+|+...
T Consensus 91 ~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~ 149 (204)
T 3th5_A 91 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 149 (204)
Confidence 9988889999999999999998776554432 22333333 7899999999999753
No 167
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.20 E-value=1.4e-11 Score=142.59 Aligned_cols=112 Identities=17% Similarity=0.239 Sum_probs=85.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCc-cch
Q 047363 10 RNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHM-DFC 88 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~-dF~ 88 (876)
.+|+|+|.+|+|||||+++|++. ...+.... .|+|.......+.+++..+.||||||+. ++.
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~--~~a~vs~~---------------~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~ 306 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNE--DRAIVTDI---------------PGTTRDVISEEIVIRGILFRIVDTAGVRSETN 306 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHH--TBCCCCCS---------------SCCSSCSCCEEEEETTEEEEEEESSCCCSSCC
T ss_pred CEEEEECcCCCcHHHHHHHHHCC--CCCccCCC---------------CCeeeeeEEEEEecCCeEEEEEECCCccccch
Confidence 47999999999999999999987 32221111 1334444445566778999999999998 653
Q ss_pred --------HHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccc
Q 047363 89 --------SEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 89 --------~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~ 140 (876)
..+..+++.+|++|+|+|+.++...+...++..+ .++|+++|+||+|+..
T Consensus 307 ~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~il~~l--~~~piivV~NK~DL~~ 364 (482)
T 1xzp_A 307 DLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERI--KNKRYLVVINKVDVVE 364 (482)
T ss_dssp TTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHH--TTSSEEEEEEECSSCC
T ss_pred hhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHHHHHHh--cCCCEEEEEECccccc
Confidence 3456789999999999999988776666666554 4789999999999964
No 168
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.19 E-value=2e-11 Score=121.72 Aligned_cols=111 Identities=20% Similarity=0.242 Sum_probs=68.1
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCC----
Q 047363 9 IRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGH---- 84 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh---- 84 (876)
+.+|+++|+.|+|||||+++|++. . ... . ...|+|.....+ .+. .+++|||||+
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~--~--~~~---------~-----~~~~~t~~~~~~--~~~--~~~l~Dt~G~~~~~ 58 (190)
T 2cxx_A 1 MATIIFAGRSNVGKSTLIYRLTGK--K--VRR---------G-----KRPGVTRKIIEI--EWK--NHKIIDMPGFGFMM 58 (190)
T ss_dssp -CEEEEEEBTTSSHHHHHHHHHSC--C--CSS---------S-----SSTTCTTSCEEE--EET--TEEEEECCCBSCCT
T ss_pred CcEEEEECCCCCCHHHHHHHHhCc--C--Ccc---------C-----CCCCccceeEEE--ecC--CEEEEECCCccccc
Confidence 468999999999999999999855 2 110 0 011333332222 222 7899999994
Q ss_pred -------ccchHHHHHHHHh-cC---eEEEEEcCCCcc-----------ccchHHHHHHhhhhcCCcEEEEeccccccc
Q 047363 85 -------MDFCSEVSTAARL-SD---GALVLVDAVEGV-----------HIQTHAVLRQSWIEKLTPCLVLNKIDRLIS 141 (876)
Q Consensus 85 -------~dF~~e~~~al~~-aD---gaIlVvDa~egv-----------~~~t~~~l~~~~~~~ip~ilviNKiD~~~~ 141 (876)
..|.......++. +| +++.|+|+.... ..+...+++.+...++|+++|+||+|+...
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 137 (190)
T 2cxx_A 59 GLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKN 137 (190)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSC
T ss_pred cCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCc
Confidence 4455555555554 55 555555553211 111233445555678999999999999754
No 169
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.15 E-value=6.6e-11 Score=137.59 Aligned_cols=112 Identities=20% Similarity=0.150 Sum_probs=84.4
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccc
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDF 87 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF 87 (876)
+..+|+|+|.+|+|||||+++|+.. .. .. .. .|+......+.++++.++||||||+.+|
T Consensus 321 ~~~ki~lvG~~nvGKSsLl~~l~~~--~~-~~-----------~~-------~T~~~~~~~~~~~~~~~~l~Dt~G~~~~ 379 (497)
T 3lvq_E 321 KEMRILMLGLDAAGKTTILYKLKLG--QS-VT-----------TI-------PTVGFNVETVTYKNVKFNVWDVGGQDKI 379 (497)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS--SC-CC-----------CC-------CCSSEEEEEEESSSCEEEEEEECCCGGG
T ss_pred cceeEEEEcCCCCCHHHHHHHHhcC--CC-CC-----------cC-------CccceeEEEEEeCCEEEEEEECCCcHHH
Confidence 4478999999999999999999876 21 10 00 1222333456678899999999999999
Q ss_pred hHHHHHHHHhcCeEEEEEcCCCccccchHH-HHHHhh----hhcCCcEEEEecccccc
Q 047363 88 CSEVSTAARLSDGALVLVDAVEGVHIQTHA-VLRQSW----IEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 88 ~~e~~~al~~aDgaIlVvDa~egv~~~t~~-~l~~~~----~~~ip~ilviNKiD~~~ 140 (876)
......+++.+|++|+|+|+.+........ .+.... ..++|+|||+||+|+..
T Consensus 380 ~~~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 437 (497)
T 3lvq_E 380 RPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 437 (497)
T ss_dssp SGGGGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSS
T ss_pred HHHHHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCc
Confidence 988899999999999999999865444332 222222 24789999999999975
No 170
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.08 E-value=3.6e-10 Score=114.57 Aligned_cols=115 Identities=15% Similarity=0.162 Sum_probs=78.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcC--eEEEEEcCCCCc
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKD--YAINLIDSPGHM 85 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~--~~inlIDTPGh~ 85 (876)
...+|+|+|+.|+|||||+++|++. .-.... ....|.+.... .+.+.+ ..+.++||||+.
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~--~~~~~~--------------~~t~~~~~~~~--~i~~~g~~~~~~i~Dt~g~~ 65 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRN--EFNLES--------------KSTIGVEFATR--SIQVDGKTIKAQIWDTAGQE 65 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHS--CCCC-----------------CCCSCEEEEE--EEEETTEEEEEEEEECSSGG
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcC--CCCCCC--------------CCccceeEEEE--EEEECCEEEEEEEEECCCch
Confidence 4678999999999999999999876 211000 00012222222 333443 567899999999
Q ss_pred cchHHHHHHHHhcCeEEEEEcCCCccccchHHHH-HHhh---hhcCCcEEEEecccccc
Q 047363 86 DFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVL-RQSW---IEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 86 dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l-~~~~---~~~ip~ilviNKiD~~~ 140 (876)
.|.......++.+|++++|+|+.+.........| ..+. ..+.|+++++||+|+..
T Consensus 66 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~ 124 (199)
T 2f9l_A 66 RYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRH 124 (199)
T ss_dssp GTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred hhhhhhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECccccc
Confidence 9877777888899999999999876554433222 2222 24678999999999964
No 171
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.06 E-value=1.9e-10 Score=125.53 Aligned_cols=114 Identities=14% Similarity=0.057 Sum_probs=79.0
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEc--CeEEEEEcCCCCc
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYK--DYAINLIDSPGHM 85 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~--~~~inlIDTPGh~ 85 (876)
...+|+++|.+|+|||||+++|+.. . ......+.+ +... ...+... .+.++||||||+.
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~--~--~~~~~~~t~------------~~~~---~~~~~~~~~~~~~~l~Dt~G~~ 214 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTN--A--FPGEYIPTV------------FDNY---SANVMVDGKPVNLGLWDTAGLE 214 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHS--C--CCCSCCCCS------------EEEE---EEEEEETTEEEEEEEEEECCCG
T ss_pred ceeEEEEECCCCCChHHHHHHHHhC--C--CCcccCCcc------------ccee---EEEEEECCEEEEEEEEeCCCch
Confidence 3468999999999999999999865 2 110000000 1111 1122333 3556799999999
Q ss_pred cchHHHHHHHHhcCeEEEEEcCCCccccchHH--HHHHhhhh--cCCcEEEEecccccc
Q 047363 86 DFCSEVSTAARLSDGALVLVDAVEGVHIQTHA--VLRQSWIE--KLTPCLVLNKIDRLI 140 (876)
Q Consensus 86 dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~--~l~~~~~~--~ip~ilviNKiD~~~ 140 (876)
+|......+++.+|++|+|+|+.+..+..... .+..+... ++|+++|+||+|+..
T Consensus 215 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 273 (332)
T 2wkq_A 215 DYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRD 273 (332)
T ss_dssp GGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHT
T ss_pred hhhHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhccc
Confidence 99888888899999999999998876544432 22333333 789999999999864
No 172
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.05 E-value=8.4e-11 Score=130.30 Aligned_cols=114 Identities=15% Similarity=0.166 Sum_probs=77.4
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcC-eEEEEEcCCCCcc-
Q 047363 9 IRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKD-YAINLIDSPGHMD- 86 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~-~~inlIDTPGh~d- 86 (876)
+..|+++|.+|+|||||+++|+.. ...+. ++ ...|.......+.+.+ ..+.|+||||+.+
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~--~~~i~----------~~------~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~ 219 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSA--KPKIA----------DY------HFTTLVPNLGMVETDDGRSFVMADLPGLIEG 219 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEE--CCEES----------ST------TSSCCCCCEEEEECSSSCEEEEEEHHHHHHH
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcC--CCccc----------cC------CccccCceEEEEEeCCCceEEEecCCCCccc
Confidence 457999999999999999999654 21111 11 1123333334455554 7899999999654
Q ss_pred ------chHHHHHHHHhcCeEEEEEcCCC---ccccc-hHHHHHHhhh-----hcCCcEEEEecccccc
Q 047363 87 ------FCSEVSTAARLSDGALVLVDAVE---GVHIQ-THAVLRQSWI-----EKLTPCLVLNKIDRLI 140 (876)
Q Consensus 87 ------F~~e~~~al~~aDgaIlVvDa~e---gv~~~-t~~~l~~~~~-----~~ip~ilviNKiD~~~ 140 (876)
+.....+.+..+|++|+|+|+.. ..... ...++..+.. .++|+++|+||+|+..
T Consensus 220 a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~ 288 (342)
T 1lnz_A 220 AHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPE 288 (342)
T ss_dssp TTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTT
T ss_pred ccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCC
Confidence 44566777778999999999975 22222 2333344433 4789999999999974
No 173
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.04 E-value=1.4e-10 Score=116.01 Aligned_cols=117 Identities=21% Similarity=0.190 Sum_probs=73.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEE---EEcCeEEEEEcCCCCcc
Q 047363 10 RNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIAL---HYKDYAINLIDSPGHMD 86 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~---~~~~~~inlIDTPGh~d 86 (876)
.+|+|+|.+|+|||||+++|++. ..... +.. ....|+.+....+.+ ......+.+|||||+.+
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~--~~~~~----~~~--------~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 68 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKT--KKSDL----GMQ--------SATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREE 68 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC-------------------------CSEEEEEEEC---------CEEEEEEECSHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhcC--CCccC----CCc--------ceeccEEeEEeeeccccCCCCceEEEEEecCCCHH
Confidence 47999999999999999999653 11110 000 001122222211111 11357899999999998
Q ss_pred chHHHHHHHHhcCeEEEEEcCCCcc-ccchH-HHHHHhhh--hcCCcEEEEecccccc
Q 047363 87 FCSEVSTAARLSDGALVLVDAVEGV-HIQTH-AVLRQSWI--EKLTPCLVLNKIDRLI 140 (876)
Q Consensus 87 F~~e~~~al~~aDgaIlVvDa~egv-~~~t~-~~l~~~~~--~~ip~ilviNKiD~~~ 140 (876)
|.......++.+|++++|+|..++. +.... ..+..+.. .++|+++|+||+|+..
T Consensus 69 ~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 126 (184)
T 2zej_A 69 FYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSD 126 (184)
T ss_dssp HHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCC
T ss_pred HHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCccc
Confidence 8877778889999999999998763 22222 22222222 3789999999999864
No 174
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.03 E-value=1.1e-09 Score=110.54 Aligned_cols=116 Identities=16% Similarity=0.166 Sum_probs=78.4
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcC--eEEEEEcCCCC
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKD--YAINLIDSPGH 84 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~--~~inlIDTPGh 84 (876)
+....|+|+|+.|+|||||+++|.+. .-..... ..-|.+... ..+.+.+ ..+.++||||+
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~--~~~~~~~--------------~t~~~~~~~--~~i~~~g~~~~~~i~Dt~g~ 88 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRN--EFNLESK--------------STIGVEFAT--RSIQVDGKTIKAQIWDTAGL 88 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHS--CCCCSCC--------------CCCSEEEEE--EEEEETTEEEEEEEEEECSC
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcC--CCCCCCC--------------CccceEEEE--EEEEECCEEEEEEEEECCCC
Confidence 34578999999999999999999876 2110000 011222222 2334444 45677999999
Q ss_pred ccchHHHHHHHHhcCeEEEEEcCCCccccchHH-HHHHhh---hhcCCcEEEEecccccc
Q 047363 85 MDFCSEVSTAARLSDGALVLVDAVEGVHIQTHA-VLRQSW---IEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 85 ~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~-~l~~~~---~~~ip~ilviNKiD~~~ 140 (876)
..|...+...++.+|++++|+|..+........ .+..+. ..+.|+++++||+|+..
T Consensus 89 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~ 148 (191)
T 1oix_A 89 ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRH 148 (191)
T ss_dssp CSSSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred cchhhhhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 999888888889999999999988654433322 222222 24678999999999864
No 175
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.01 E-value=8.2e-10 Score=123.41 Aligned_cols=115 Identities=23% Similarity=0.302 Sum_probs=74.6
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccc
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDF 87 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF 87 (876)
.++.|+|+|++|+|||||+++|++. ..... ...+.|.......+.+.+..+.++||||+.+.
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~--~~~~~----------------~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~ 239 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGL--TQKVD----------------TKLFTTMSPKRYAIPINNRKIMLVDTVGFIRG 239 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------------------------CCSCEEEEEETTEEEEEEECCCBCSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCC--Ccccc----------------CCcccccCCEEEEEEECCEEEEEEeCCCchhc
Confidence 4677999999999999999999754 21100 01123433444566677889999999997432
Q ss_pred --------hHHHHHHHHhcCeEEEEEcCCCcc--cc-chH---HHHHHhhhhcCCcEEEEecccccc
Q 047363 88 --------CSEVSTAARLSDGALVLVDAVEGV--HI-QTH---AVLRQSWIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 88 --------~~e~~~al~~aDgaIlVvDa~egv--~~-~t~---~~l~~~~~~~ip~ilviNKiD~~~ 140 (876)
...+...++.+|++++|+|+.+.. .. +.. .+++.....++|+++|+||+|+..
T Consensus 240 lp~~lve~f~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~ 306 (364)
T 2qtf_A 240 IPPQIVDAFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKIN 306 (364)
T ss_dssp CCGGGHHHHHHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCC
T ss_pred CCHHHHHHHHHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCC
Confidence 122344578899999999998764 22 211 222222224689999999999975
No 176
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.01 E-value=4.2e-10 Score=116.21 Aligned_cols=119 Identities=15% Similarity=0.119 Sum_probs=73.5
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCcc
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMD 86 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~d 86 (876)
....+|+|+|.+|+|||||+++|++. ...+... .+ .-|.+.....+.+....+.+.++||+|...
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~--~~~~~~~----------~~---~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~ 99 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGV--HDSMDSD----------CE---VLGEDTYERTLMVDGESATIILLDMWENKG 99 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC--CCTTCCC----------------CCTTEEEEEEEETTEEEEEEEECCTTTTH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC--CCCCCCc----------CC---ccceeeEEEEEEECCeeeEEEEeecCCCcc
Confidence 44578999999999999999999754 2222110 00 012222122222222235678999999877
Q ss_pred -chHHHHHHHHhcCeEEEEEcCCCccccchHHHH-HHhh----hhcCCcEEEEecccccc
Q 047363 87 -FCSEVSTAARLSDGALVLVDAVEGVHIQTHAVL-RQSW----IEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 87 -F~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l-~~~~----~~~ip~ilviNKiD~~~ 140 (876)
+.......++.+|++|+|+|..+..+.....-| ..+. ..++|+|||+||+|+..
T Consensus 100 ~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~ 159 (211)
T 2g3y_A 100 ENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVR 159 (211)
T ss_dssp HHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGG
T ss_pred hhhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhc
Confidence 333333445778999999999865443333223 3332 23789999999999964
No 177
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=98.99 E-value=3.3e-10 Score=124.01 Aligned_cols=112 Identities=11% Similarity=0.182 Sum_probs=74.0
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccchH-
Q 047363 11 NISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFCS- 89 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~~- 89 (876)
+|+++|..|+|||||+.++... ... .. ...-+.|+......+. ...+++||||||+.+|..
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~----~~~-~~------------~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~ 62 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHN----MQP-LD------------TLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEP 62 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSC----CCS-GG------------GTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCC
T ss_pred CEEEECCCCCCHHHHHHHHHcC----CCC-Cc------------cceecCeeeeeeEEEc-cEEEEEEEECCCchhccch
Confidence 4789999999999999876432 110 00 0001122222222221 347899999999999964
Q ss_pred --HHHHHHHhcCeEEEEEcCCCccccchHHHHHH----hh--hhcCCcEEEEeccccccc
Q 047363 90 --EVSTAARLSDGALVLVDAVEGVHIQTHAVLRQ----SW--IEKLTPCLVLNKIDRLIS 141 (876)
Q Consensus 90 --e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~----~~--~~~ip~ilviNKiD~~~~ 141 (876)
.....++.++++|+|+|+.+. ......-|+. +. ..++|+++|+||+|+...
T Consensus 63 ~l~~~~yyr~a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~ 121 (331)
T 3r7w_B 63 SYDSERLFKSVGALVYVIDSQDE-YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSE 121 (331)
T ss_dssp SHHHHHHHTTCSEEEEECCCSSC-TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCS
T ss_pred hhhhhhhccCCCEEEEEEECCch-HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCch
Confidence 467889999999999999876 3333333322 22 246899999999999753
No 178
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=98.99 E-value=9.2e-10 Score=111.27 Aligned_cols=118 Identities=14% Similarity=0.106 Sum_probs=72.3
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCcc-
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMD- 86 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~d- 86 (876)
...+|+++|.+|+|||||+++|++. ...+.. ..+ .-|.+.....+.+......+.++||+|...
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~--~~~~~~----------~~~---~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~ 69 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGV--HDSMDS----------DXE---VLGEDTYERTLMVDGESATIILLDMWENKGE 69 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH--SCCC--------------G---GGCTTEEEEEEEETTEEEEEEEECCCCC---
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC--cCCcCc----------ccc---ccceeEEEEEEEECCeEEEEEEEEeccCcch
Confidence 4578999999999999999999876 322211 000 012222222222222234678899999765
Q ss_pred chHHHHHHHHhcCeEEEEEcCCCccccchHH-HHHHhh----hhcCCcEEEEecccccc
Q 047363 87 FCSEVSTAARLSDGALVLVDAVEGVHIQTHA-VLRQSW----IEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 87 F~~e~~~al~~aDgaIlVvDa~egv~~~t~~-~l~~~~----~~~ip~ilviNKiD~~~ 140 (876)
+.......++.+|++|+|+|..+..+..... .+..+. ..++|+++|.||+|+..
T Consensus 70 ~~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~ 128 (192)
T 2cjw_A 70 NEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVR 128 (192)
T ss_dssp -CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGG
T ss_pred hhhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhc
Confidence 2223345678899999999998654443332 222232 23789999999999864
No 179
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.99 E-value=1.3e-09 Score=121.40 Aligned_cols=134 Identities=18% Similarity=0.284 Sum_probs=83.6
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhh----CCCCccccc---------CC--c-e--------eeccChhhh------hh
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAAT----GGGLLHPKL---------AG--K-L--------RFMDYLDEE------QR 57 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t----~~g~i~~~~---------~g--~-~--------~~~d~~~~E------~~ 57 (876)
.+..|+|+|+.|+|||||+++|++.. +.|.+.+.. .+ . . .+.|+.... ..
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 56799999999999999999998741 112221110 00 0 0 000110000 00
Q ss_pred ----cceeeeeeEEEEEE--c-CeEEEEEcCCCCccc-------------hHHHHHHHHhcCeEEEEEcCCCc-c-ccch
Q 047363 58 ----RAITMKSSSIALHY--K-DYAINLIDSPGHMDF-------------CSEVSTAARLSDGALVLVDAVEG-V-HIQT 115 (876)
Q Consensus 58 ----rgiti~~~~i~~~~--~-~~~inlIDTPGh~dF-------------~~e~~~al~~aDgaIlVvDa~eg-v-~~~t 115 (876)
.+..+....+.+.. . ...+.||||||..++ ...+..+++.+|++|+|+|+... . ....
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~ 192 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHH
T ss_pred HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHH
Confidence 12222222233322 2 467999999999887 66678889999999999987532 2 2233
Q ss_pred HHHHHHhhhhcCCcEEEEeccccccc
Q 047363 116 HAVLRQSWIEKLTPCLVLNKIDRLIS 141 (876)
Q Consensus 116 ~~~l~~~~~~~ip~ilviNKiD~~~~ 141 (876)
..+++.+...+.|+++|+||+|+...
T Consensus 193 ~~l~~~~~~~~~~~i~V~nK~Dl~~~ 218 (360)
T 3t34_A 193 IKISREVDPSGDRTFGVLTKIDLMDK 218 (360)
T ss_dssp HHHHHHSCTTCTTEEEEEECGGGCCT
T ss_pred HHHHHHhcccCCCEEEEEeCCccCCC
Confidence 45666666778999999999999753
No 180
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=98.98 E-value=1.4e-09 Score=121.02 Aligned_cols=133 Identities=14% Similarity=0.170 Sum_probs=82.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhhCC----CCcccccCCceee------------------ccChh--hhh-------
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAATGG----GLLHPKLAGKLRF------------------MDYLD--EEQ------- 56 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t~~----g~i~~~~~g~~~~------------------~d~~~--~E~------- 56 (876)
....|+|+|.+++|||||+++|++.... |..+. ..+.++. ++... .+.
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~-~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTR-RPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCC-SCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccc-cceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 4578999999999999999999875111 11111 1111111 11110 011
Q ss_pred ---hcceeeeeeEEEEEEc-CeEEEEEcCCCCcc-------------chHHHHHHHHhcCe-EEEEEcCCCccccchH-H
Q 047363 57 ---RRAITMKSSSIALHYK-DYAINLIDSPGHMD-------------FCSEVSTAARLSDG-ALVLVDAVEGVHIQTH-A 117 (876)
Q Consensus 57 ---~rgiti~~~~i~~~~~-~~~inlIDTPGh~d-------------F~~e~~~al~~aDg-aIlVvDa~egv~~~t~-~ 117 (876)
..|+......+.+... ...+.||||||..+ +...+..+++.++. +++|+|+..+...+.. .
T Consensus 109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~ 188 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 188 (353)
T ss_dssp HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHH
T ss_pred cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHH
Confidence 1455444434444444 47899999999643 33455566666654 4556777766665554 3
Q ss_pred HHHHhhhhcCCcEEEEeccccccc
Q 047363 118 VLRQSWIEKLTPCLVLNKIDRLIS 141 (876)
Q Consensus 118 ~l~~~~~~~ip~ilviNKiD~~~~ 141 (876)
+++.+...+.|+++|+||+|+...
T Consensus 189 i~~~~~~~~~~~i~V~NK~Dl~~~ 212 (353)
T 2x2e_A 189 VAKEVDPQGQRTIGVITKLDLMDE 212 (353)
T ss_dssp HHHHHCTTCTTEEEEEECGGGSCT
T ss_pred HHHHhCcCCCceEEEeccccccCc
Confidence 677777778999999999999753
No 181
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=98.97 E-value=1.1e-09 Score=132.43 Aligned_cols=68 Identities=19% Similarity=0.162 Sum_probs=55.1
Q ss_pred eEEEEEcCCCCcc---chHHHHHHHHhcCeEEEEEcCCCccccchHHHHH-HhhhhcCCcEEEEeccccccc
Q 047363 74 YAINLIDSPGHMD---FCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLR-QSWIEKLTPCLVLNKIDRLIS 141 (876)
Q Consensus 74 ~~inlIDTPGh~d---F~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~-~~~~~~ip~ilviNKiD~~~~ 141 (876)
..++||||||+.+ +...+..+++.+|++|+|+|+..+........|. .+...+.|+++|+||+|+...
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~~~~~iiiVlNK~Dl~~~ 245 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGRGLTVFFLVNAWDQVRE 245 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTTSCCCEEEEEECGGGGGG
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHhhCCCEEEEEECcccccc
Confidence 4699999999765 4456678889999999999999887766666665 455568899999999999754
No 182
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.96 E-value=1.8e-09 Score=120.34 Aligned_cols=116 Identities=22% Similarity=0.208 Sum_probs=75.8
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCcc
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMD 86 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~d 86 (876)
....+|+++|++|+|||||+++|++. ...+. + ..+.|.......+.+.+..+.+|||||+.+
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~--~~~~~----------~------~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~ 226 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTA--KPEIA----------S------YPFTTRGINVGQFEDGYFRYQIIDTPGLLD 226 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSS--CCEEE----------C------CTTCSSCEEEEEEEETTEEEEEEECTTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC--CCccC----------C------CCCeeeceeEEEEEecCceEEEEeCCCccc
Confidence 35679999999999999999999654 21000 0 012233333345556678999999999876
Q ss_pred chH--------HHHHHH-HhcCeEEEEEcCCCcc--ccch-HHHHHHhhh--hcCCcEEEEecccccc
Q 047363 87 FCS--------EVSTAA-RLSDGALVLVDAVEGV--HIQT-HAVLRQSWI--EKLTPCLVLNKIDRLI 140 (876)
Q Consensus 87 F~~--------e~~~al-~~aDgaIlVvDa~egv--~~~t-~~~l~~~~~--~~ip~ilviNKiD~~~ 140 (876)
+.. ....++ ..+|++|+|+|+..+. .... ..++..+.. .++|+++|+||+|+..
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~ 294 (357)
T 2e87_A 227 RPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVAD 294 (357)
T ss_dssp SCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCC
T ss_pred cchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCC
Confidence 521 122223 3589999999987643 2222 233333332 2799999999999975
No 183
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.94 E-value=5.9e-10 Score=123.49 Aligned_cols=63 Identities=22% Similarity=0.188 Sum_probs=44.6
Q ss_pred EcCeEEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccc
Q 047363 71 YKDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 71 ~~~~~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~ 140 (876)
+.++.++||||||+.++... ..+.+|++|+|+|+..+...+.... ...++|.++|+||+|+..
T Consensus 146 ~~~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~----~~~~~p~ivv~NK~Dl~~ 208 (341)
T 2p67_A 146 AAGYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK----GLMEVADLIVINKDDGDN 208 (341)
T ss_dssp HTTCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCH----HHHHHCSEEEECCCCTTC
T ss_pred ccCCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH----hhhcccCEEEEECCCCCC
Confidence 45789999999999887654 3689999999999986654332111 123679999999999975
No 184
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.92 E-value=1.2e-09 Score=121.93 Aligned_cols=121 Identities=17% Similarity=0.269 Sum_probs=61.7
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcC--eEEEEEcCCCCccc
Q 047363 10 RNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKD--YAINLIDSPGHMDF 87 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~--~~inlIDTPGh~dF 87 (876)
.+|+|+|++|+|||||+++|+.. . .... + +......+....+++......+.+.+ ..+++|||||+.++
T Consensus 38 ~~I~vvG~~g~GKSTLln~L~~~--~-~~~~---~---~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~ 108 (361)
T 2qag_A 38 FTLMVVGESGLGKSTLINSLFLT--D-LYPE---R---VIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDA 108 (361)
T ss_dssp ECEEECCCTTSCHHHHHHHHTTC--C-C---------------------CEEEEEEEEC----CEEEEEEEEC-------
T ss_pred EEEEEEcCCCCCHHHHHHHHhCC--C-CCCC---C---cccCCCcccCCceeEEEEEEEeecCCcccceEEEEecccccc
Confidence 57999999999999999998654 1 1110 0 11111111122333333333333333 47999999999544
Q ss_pred hH-------HHH-------HHHHhcC-------------eEEEEEcC-CCccccchHHHHHHhhhhcCCcEEEEeccccc
Q 047363 88 CS-------EVS-------TAARLSD-------------GALVLVDA-VEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRL 139 (876)
Q Consensus 88 ~~-------e~~-------~al~~aD-------------gaIlVvDa-~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~ 139 (876)
.. .+. .+++.++ ++|++|+. ..+.......+++.+ ..++|+|+|+||+|+.
T Consensus 109 ~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l-~~~~piIlV~NK~Dl~ 187 (361)
T 2qag_A 109 INCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI-HNKVNIVPVIAKADTL 187 (361)
T ss_dssp -------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT-CS-SCEEEEEECCSSS
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh-ccCCCEEEEEECCCCC
Confidence 22 222 4555443 46777775 445554444455554 4689999999999997
Q ss_pred c
Q 047363 140 I 140 (876)
Q Consensus 140 ~ 140 (876)
.
T Consensus 188 ~ 188 (361)
T 2qag_A 188 T 188 (361)
T ss_dssp C
T ss_pred C
Confidence 5
No 185
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=98.91 E-value=6.6e-10 Score=130.49 Aligned_cols=118 Identities=19% Similarity=0.143 Sum_probs=79.2
Q ss_pred CCCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeee------EEEE--EEcCeEEE
Q 047363 6 TRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSS------SIAL--HYKDYAIN 77 (876)
Q Consensus 6 ~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~------~i~~--~~~~~~in 77 (876)
+.+..+|+++|.+|+|||||+++|++........ ...|+++.+. .+.+ ......++
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~----------------~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~ 101 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKES----------------QTHGLNVVTKQAPNIKGLENDDELKECLFH 101 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC---------------------------CCCEEEEEGGGSGGGTTCSTTTTCEEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCC----------------CccceEEEEeccccccceeecCCCceEEEE
Confidence 3455789999999999999999998651100000 0011111110 0000 11257899
Q ss_pred EEcCCCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhc--CCcEEEEeccccccc
Q 047363 78 LIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEK--LTPCLVLNKIDRLIS 141 (876)
Q Consensus 78 lIDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~--ip~ilviNKiD~~~~ 141 (876)
++||||+..|.......++.+|++|+|+|+... ......+..+...+ +|+|+|+||+|+...
T Consensus 102 i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~ 165 (535)
T 3dpu_A 102 FWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSPVIVVMNKIDENPS 165 (535)
T ss_dssp EECCCSCCTTTTTCHHHHHSSEEEEEEECGGGG--GGHHHHHHHHHHHSSSCCEEEEECCTTTCTT
T ss_pred EEECCcHHHHHHHHHHHccCCcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCCEEEEEECCCcccc
Confidence 999999999988888889999999999999765 33344555555544 899999999999753
No 186
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.91 E-value=1.6e-09 Score=110.29 Aligned_cols=114 Identities=16% Similarity=0.165 Sum_probs=73.0
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccc
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDF 87 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF 87 (876)
.-..|+++|++|+|||||+++|++. .. ... + ....|.+.... .+.+.+ .+.++||||+.++
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~--~~-~~~-------~------~~~~G~~~~~~--~~~~~~-~~~l~Dt~G~~~~ 85 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQ--KS-LAR-------T------SKTPGRTQLIN--LFEVAD-GKRLVDLPGYGYA 85 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC-----------------------------CCEE--EEEEET-TEEEEECCCCC--
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC--Cc-ccc-------c------cCCCccceeeE--EEEecC-CEEEEECcCCccc
Confidence 4468999999999999999999643 10 000 0 01123332222 122333 6889999998642
Q ss_pred ----------hHHHHHHH---HhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccc
Q 047363 88 ----------CSEVSTAA---RLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 88 ----------~~e~~~al---~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~ 140 (876)
...+...+ +.+|++++|+|+..+.......+.+.+...++|.+++.||+|+..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s 151 (210)
T 1pui_A 86 EVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLA 151 (210)
T ss_dssp ----CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSC
T ss_pred ccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCC
Confidence 22222333 578999999999887765555566667778899999999999874
No 187
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=98.90 E-value=1.4e-09 Score=122.96 Aligned_cols=90 Identities=13% Similarity=0.113 Sum_probs=46.1
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEE-------------EEEc---Ce
Q 047363 11 NISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIA-------------LHYK---DY 74 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~-------------~~~~---~~ 74 (876)
+|+|+|++|+|||||+++|++. ...++... +. ..+...|+........ ..+. ..
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~--~~~~~~~p-~t-------T~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~ 71 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLV--DVEIANYP-FT-------TIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALI 71 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC------------------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHCC--CCcccCCC-Cc-------ccCCceEEEeeccCCchHHhhhhcccccccccCCcceE
Confidence 6999999999999999999865 21111100 00 0011112110000000 0112 25
Q ss_pred EEEEEcCCCCccchH-------HHHHHHHhcCeEEEEEcCCCc
Q 047363 75 AINLIDSPGHMDFCS-------EVSTAARLSDGALVLVDAVEG 110 (876)
Q Consensus 75 ~inlIDTPGh~dF~~-------e~~~al~~aDgaIlVvDa~eg 110 (876)
.++||||||+.++.. ....+++.+|++++|+|+.++
T Consensus 72 ~i~lvDtpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 72 PVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp EEEEEECC---------------CCCSSTTCSEEEEEEETTCC
T ss_pred EEEEEECCCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 799999999876421 222457899999999999875
No 188
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=98.89 E-value=3.8e-09 Score=118.08 Aligned_cols=115 Identities=18% Similarity=0.250 Sum_probs=84.7
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccc-
Q 047363 9 IRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDF- 87 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF- 87 (876)
.-.|+|+|.+|+|||||+++|++. ...+.. ..+.|+......+.+.+..+.|+||||..+-
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~--~~~v~~----------------~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a 133 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGT--ESEAAE----------------YEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGA 133 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSB--CCCGGG----------------TCSSCCCEEEEEEEETTEEEEEEECGGGCCC-
T ss_pred CCeEEEECCCCCCHHHHHHHHhCC--CCcccC----------------CCCceeeeeeEEEEeCCcEEEEEeCCCccCCc
Confidence 458999999999999999999765 322221 1245677777788899999999999998653
Q ss_pred ------hHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhh-----hcCCcEEEEecccccccc
Q 047363 88 ------CSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWI-----EKLTPCLVLNKIDRLISE 142 (876)
Q Consensus 88 ------~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~-----~~ip~ilviNKiD~~~~e 142 (876)
...+...++.||.+++|||+.+.+.. .+.+...+.. ...|.++++||+|+...+
T Consensus 134 ~~~~~~g~~~l~~i~~ad~il~vvD~~~p~~~-~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~ 198 (376)
T 4a9a_A 134 KDGRGRGKQVIAVARTCNLLFIILDVNKPLHH-KQIIEKELEGVGIRLNKTPPDILIKKKEKGGIS 198 (376)
T ss_dssp ----CHHHHHHHHHHHCSEEEEEEETTSHHHH-HHHHHHHHHHTTEEETCCCCCEEEEECSSSCEE
T ss_pred hhhhHHHHHHHHHHHhcCccccccccCccHHH-HHHHHHHHHHhhHhhccCChhhhhhHhhhhhhh
Confidence 34578889999999999999875432 1222222222 356999999999986543
No 189
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.82 E-value=5.2e-09 Score=116.53 Aligned_cols=120 Identities=19% Similarity=0.184 Sum_probs=72.7
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhC-CCCcccccCCceeeccChhhhhh------------------cceeeeeeEE
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATG-GGLLHPKLAGKLRFMDYLDEEQR------------------RAITMKSSSI 67 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~-~g~i~~~~~g~~~~~d~~~~E~~------------------rgiti~~~~i 67 (876)
.+.+.|+|+|++|+|||||+++|..... .| .++.+.+..+.... .+..+.....
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g-------~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~ 149 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLIERG-------HRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPT 149 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHHTTT-------CCEEEEEEC----------------CHHHHTCTTEEEECCC-
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHhCC-------CceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCC
Confidence 4578999999999999999999986510 11 11112221111110 1121111100
Q ss_pred ----------------EEEEcCeEEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEE
Q 047363 68 ----------------ALHYKDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCL 131 (876)
Q Consensus 68 ----------------~~~~~~~~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~il 131 (876)
.+.+.++.+.||||||... .....+..+|++|+|+|+..+...+... .....+|.++
T Consensus 150 ~~~~~~~~~~t~d~i~~~~~~~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~----~~~~~~p~iv 222 (355)
T 3p32_A 150 SGTLGGVTRATRETVVLLEAAGFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIK----KGVLELADIV 222 (355)
T ss_dssp -CCHHHHHHHHHHHHHHHHHTTCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCC----TTSGGGCSEE
T ss_pred CccccchhHHHHHHHHHHhhCCCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHH----HhHhhcCCEE
Confidence 0122468999999999544 3334468999999999987665443221 1123469999
Q ss_pred EEecccccc
Q 047363 132 VLNKIDRLI 140 (876)
Q Consensus 132 viNKiD~~~ 140 (876)
|+||+|+..
T Consensus 223 VlNK~Dl~~ 231 (355)
T 3p32_A 223 VVNKADGEH 231 (355)
T ss_dssp EEECCCGGG
T ss_pred EEECCCCcC
Confidence 999999974
No 190
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.80 E-value=2.3e-09 Score=110.15 Aligned_cols=123 Identities=21% Similarity=0.246 Sum_probs=70.9
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCC----CcccccCCceeeccChhhhhhcceeeeeeE----EEE---------
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGG----LLHPKLAGKLRFMDYLDEEQRRAITMKSSS----IAL--------- 69 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g----~i~~~~~g~~~~~d~~~~E~~rgiti~~~~----i~~--------- 69 (876)
.++++|+++|++|+|||||+++|+...... .+.. ..+ +-.|....+ ..|+++..-. ..+
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~-d~~--~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLG-DVV--SKADYERVR-RFGIKAEAISTGKECHLDAHMIYHRL 103 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEEC-SCC--CHHHHHHHH-TTTCEEEECCCTTCSSCCHHHHHTTG
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEec-CCC--CchhHHHHH-hCCCcEEEecCCceeecccHHHHHHH
Confidence 367899999999999999999999873211 0100 000 000111111 1133211000 001
Q ss_pred -EEcCeEEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccc
Q 047363 70 -HYKDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 70 -~~~~~~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~ 140 (876)
.+.++.+.+|||||..+-.... -...+.+|+|+|+..+.. ..+......++|.++|+||+|+..
T Consensus 104 ~~~~~~d~iiidt~G~~~~~~~~---~~~~~~~i~vvd~~~~~~----~~~~~~~~~~~~~iiv~NK~Dl~~ 168 (221)
T 2wsm_A 104 KKFSDCDLLLIENVGNLICPVDF---DLGENYRVVMVSVTEGDD----VVEKHPEIFRVADLIVINKVALAE 168 (221)
T ss_dssp GGGTTCSEEEEEEEEBSSGGGGC---CCSCSEEEEEEEGGGCTT----HHHHCHHHHHTCSEEEEECGGGHH
T ss_pred HhcCCCCEEEEeCCCCCCCCchh---ccccCcEEEEEeCCCcch----hhhhhhhhhhcCCEEEEecccCCc
Confidence 2345789999999942211100 024578999999987642 233444456799999999999964
No 191
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=98.72 E-value=2.9e-08 Score=119.69 Aligned_cols=134 Identities=13% Similarity=0.187 Sum_probs=85.4
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhhC----CCCccccc---------C--------CceeeccChhh--hh--------
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAATG----GGLLHPKL---------A--------GKLRFMDYLDE--EQ-------- 56 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t~----~g~i~~~~---------~--------g~~~~~d~~~~--E~-------- 56 (876)
....|+|+|..++|||||+|+|++... .|..++.. . ....+.+.... +.
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~ 129 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 129 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence 468999999999999999999987511 12221100 0 00001111000 00
Q ss_pred --hcceeeeeeEEEEEEc-CeEEEEEcCCCCcc-------------chHHHHHHH-HhcCeEEEEEcCCCccccchH-HH
Q 047363 57 --RRAITMKSSSIALHYK-DYAINLIDSPGHMD-------------FCSEVSTAA-RLSDGALVLVDAVEGVHIQTH-AV 118 (876)
Q Consensus 57 --~rgiti~~~~i~~~~~-~~~inlIDTPGh~d-------------F~~e~~~al-~~aDgaIlVvDa~egv~~~t~-~~ 118 (876)
..|++-....+.+... ...+.|+||||... +...+..++ ..+|.+++|+|+..+...+.. .+
T Consensus 130 g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~l 209 (772)
T 3zvr_A 130 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI 209 (772)
T ss_dssp CSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHH
T ss_pred CCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHH
Confidence 1233333333344343 35799999999654 122333444 467999999999988877776 68
Q ss_pred HHHhhhhcCCcEEEEeccccccc
Q 047363 119 LRQSWIEKLTPCLVLNKIDRLIS 141 (876)
Q Consensus 119 l~~~~~~~ip~ilviNKiD~~~~ 141 (876)
++++...+.|+|+|+||+|+...
T Consensus 210 l~~L~~~g~pvIlVlNKiDlv~~ 232 (772)
T 3zvr_A 210 AKEVDPQGQRTIGVITKLDLMDE 232 (772)
T ss_dssp HHHHCTTCSSEEEEEECTTSSCT
T ss_pred HHHHHhcCCCEEEEEeCcccCCc
Confidence 88888889999999999999854
No 192
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.70 E-value=1.5e-08 Score=117.53 Aligned_cols=124 Identities=19% Similarity=0.221 Sum_probs=74.3
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhC-CCCcccccCCceeeccC-----------hhhhhhcceeeeeeEE-------
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATG-GGLLHPKLAGKLRFMDY-----------LDEEQRRAITMKSSSI------- 67 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~-~g~i~~~~~g~~~~~d~-----------~~~E~~rgiti~~~~i------- 67 (876)
.+.++|+|+|++|+||||+++.|..... .|. ++.+.+. .......++.+.....
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~-------kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i 171 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGW-------KTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVII 171 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTC-------CEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCC-------eEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHH
Confidence 4578999999999999999999986511 010 1111111 0111223444322100
Q ss_pred ------EEEEcCeEEEEEcCCCCcc----chHHHHHHHH--hcCeEEEEEcCCCccccchHHHHHHhhhhcCCc-EEEEe
Q 047363 68 ------ALHYKDYAINLIDSPGHMD----FCSEVSTAAR--LSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTP-CLVLN 134 (876)
Q Consensus 68 ------~~~~~~~~inlIDTPGh~d----F~~e~~~al~--~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~-ilviN 134 (876)
.+.+.++.+.||||||... +..++....+ .+|.+++|+|+..|.. .....+...+ .+|+ ++|+|
T Consensus 172 ~~~al~~~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~--~~~~a~~~~~-~~~i~gvVlN 248 (504)
T 2j37_W 172 ASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQA--CEAQAKAFKD-KVDVASVIVT 248 (504)
T ss_dssp HHHHHHHHHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTT--HHHHHHHHHH-HHCCCCEEEE
T ss_pred HHHHHHHHHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccccc--HHHHHHHHHh-hcCceEEEEe
Confidence 0112578999999999874 3344433322 6899999999998753 2333333322 3785 89999
Q ss_pred cccccc
Q 047363 135 KIDRLI 140 (876)
Q Consensus 135 KiD~~~ 140 (876)
|+|...
T Consensus 249 K~D~~~ 254 (504)
T 2j37_W 249 KLDGHA 254 (504)
T ss_dssp CTTSCC
T ss_pred CCcccc
Confidence 999873
No 193
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=98.62 E-value=2.1e-08 Score=106.25 Aligned_cols=44 Identities=25% Similarity=0.283 Sum_probs=29.5
Q ss_pred hcCeEEEEEcCCCc--cccchHH-HHHHh----hhhcCCcEEEEecccccc
Q 047363 97 LSDGALVLVDAVEG--VHIQTHA-VLRQS----WIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 97 ~aDgaIlVvDa~eg--v~~~t~~-~l~~~----~~~~ip~ilviNKiD~~~ 140 (876)
.||++|+|+|+.+. .+..... .+..+ ...++|+++|+||+|+..
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~ 212 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGV 212 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBC
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccc
Confidence 58999999999875 3333222 22222 234789999999999853
No 194
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.61 E-value=7.7e-08 Score=106.84 Aligned_cols=62 Identities=21% Similarity=0.229 Sum_probs=39.1
Q ss_pred cCeEEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccc
Q 047363 72 KDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 72 ~~~~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~ 140 (876)
.++.+.|+||||..... ......+|.+++|+|+..+...+.. +. .-...|.++|+||+|+..
T Consensus 165 ~~~~~iliDT~Gi~~~~---~~l~~~~d~vl~V~d~~~~~~~~~i---~~-~il~~~~ivVlNK~Dl~~ 226 (349)
T 2www_A 165 AGYDIILIETVGVGQSE---FAVADMVDMFVLLLPPAGGDELQGI---KR-GIIEMADLVAVTKSDGDL 226 (349)
T ss_dssp TTCSEEEEECCCC--CH---HHHHTTCSEEEEEECCC----------------CCSCSEEEECCCSGGG
T ss_pred CCCCEEEEECCCcchhh---hhHHhhCCEEEEEEcCCcchhHHHh---HH-HHHhcCCEEEEeeecCCC
Confidence 56889999999964322 3346789999999999876432211 11 113569999999999964
No 195
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.57 E-value=9.3e-08 Score=108.43 Aligned_cols=113 Identities=17% Similarity=0.187 Sum_probs=71.7
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcC-eEEEEEcCCCCccc-
Q 047363 10 RNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKD-YAINLIDSPGHMDF- 87 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~-~~inlIDTPGh~dF- 87 (876)
..|+|+|++|+|||||+++|... ...+. ++. ..|.......+.+.+ ..+.++||||+.+.
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~--~~~i~----------~~~------ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a 219 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRA--HPKIA----------PYP------FTTLSPNLGVVEVSEEERFTLADIPGIIEGA 219 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSS--CCEEC----------CCT------TCSSCCEEEEEECSSSCEEEEEECCCCCCCG
T ss_pred CEEEEECCCCCcHHHHHHHHHcC--Ccccc----------Ccc------cceecceeeEEEecCcceEEEEeccccccch
Confidence 45899999999999999999544 21111 110 112223333445554 78999999998652
Q ss_pred ------hHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhh-----hhcCCcEEEEecccccc
Q 047363 88 ------CSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSW-----IEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 88 ------~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~-----~~~ip~ilviNKiD~~~ 140 (876)
.......+..+|.++.|+|+......+.....++.. ..+.|.++|+||+|...
T Consensus 220 ~~~~~L~~~fl~~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~ 283 (416)
T 1udx_A 220 SEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLE 283 (416)
T ss_dssp GGSCCSCHHHHHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSC
T ss_pred hhhhhhhHHHHHHHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhh
Confidence 234455667799999999996111111222223322 24689999999999874
No 196
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.52 E-value=1e-07 Score=106.05 Aligned_cols=92 Identities=21% Similarity=0.152 Sum_probs=54.6
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhhCCCCcccc-------cCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCC
Q 047363 10 RNISILAHVDHGKTTLADHLIAATGGGLLHPK-------LAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSP 82 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~-------~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTP 82 (876)
.+|+|+|.+|+|||||+++|++. .-.+... ..|.+.+-+.+...-. .+ .. ...+....++|||||
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~--~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~-~~-~~----~~~~~~~~i~lvDtp 74 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKA--GIEAANYPFCTIEPNTGVVPMPDPRLDALA-EI-VK----PERILPTTMEFVDIA 74 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT--C------CCCCCCCCSSEEECCCHHHHHHH-HH-HC----CSEEECCEEEEEECC
T ss_pred CEEEEECCCCCCHHHHHHHHHCC--CCcccCCCCceECceEEEEecCCcccceee-ee-ec----ccceeeeEEEEEECC
Confidence 47999999999999999999876 2111100 0111111110000000 00 00 000113579999999
Q ss_pred CCccchH-------HHHHHHHhcCeEEEEEcCCC
Q 047363 83 GHMDFCS-------EVSTAARLSDGALVLVDAVE 109 (876)
Q Consensus 83 Gh~dF~~-------e~~~al~~aDgaIlVvDa~e 109 (876)
|+.++.. .....++.+|++++|+|+.+
T Consensus 75 Gl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 75 GLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp SCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred CCcccccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 9998742 35677899999999999986
No 197
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.47 E-value=2e-07 Score=98.19 Aligned_cols=67 Identities=22% Similarity=0.132 Sum_probs=45.1
Q ss_pred CeEEEEEcCCCCccchHH------HHHHHHhcCeEEEEEcCCCccccchHH-H----HHHhhhhcCCcEEEEecccccc
Q 047363 73 DYAINLIDSPGHMDFCSE------VSTAARLSDGALVLVDAVEGVHIQTHA-V----LRQSWIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 73 ~~~inlIDTPGh~dF~~e------~~~al~~aDgaIlVvDa~egv~~~t~~-~----l~~~~~~~ip~ilviNKiD~~~ 140 (876)
++.+.||||||..++... +..++.. +.+|+|+|+.......... . +......++|.++|+||+|+..
T Consensus 108 ~~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~ 185 (262)
T 1yrb_A 108 ENDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLS 185 (262)
T ss_dssp HCSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCC
T ss_pred cCCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccc
Confidence 368999999999876422 2345555 7888999987554433211 1 1223345789999999999874
No 198
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.31 E-value=9.2e-08 Score=107.04 Aligned_cols=118 Identities=11% Similarity=0.059 Sum_probs=72.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccch-
Q 047363 10 RNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFC- 88 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~- 88 (876)
++|+++|.+|+|||||+|+|+.. ..... +..... ...|.|.....+ .+. ..++++||||..+..
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~--~~~~~----~~~~~~------~~~gtT~~~~~~--~~~-~~~~liDtPG~~~~~~ 227 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEE--ATGKG----NVITTS------YFPGTTLDMIEI--PLE-SGATLYDTPGIINHHQ 227 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHH--HHHTT----CCCEEE------ECTTSSCEEEEE--ECS-TTCEEEECCSCCCCSS
T ss_pred CcEEEEcCCCCchHHHHHHHHhh--ccCCc----cceeec------CCCCeEEeeEEE--EeC-CCeEEEeCCCcCcHHH
Confidence 68999999999999999999976 10000 000011 112444433322 222 348999999976432
Q ss_pred ------HHHHHHH---HhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccccc
Q 047363 89 ------SEVSTAA---RLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLISE 142 (876)
Q Consensus 89 ------~e~~~al---~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~~e 142 (876)
.+....+ +..|.+++++|+...........+.++...++|+++|+||+|.....
T Consensus 228 ~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~~~~~~~~v~~k~d~~~~~ 290 (369)
T 3ec1_A 228 MAHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLARLDYIKGGRRSFVCYMANELTVHRT 290 (369)
T ss_dssp GGGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEEEE
T ss_pred HHHHHhHHHHHHHhcccccCceEEEEcCCceEEECCEEEEEEccCCCceEEEEecCCcccccc
Confidence 2333444 66799999999853322111111333445678999999999997543
No 199
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.29 E-value=1e-06 Score=98.40 Aligned_cols=96 Identities=15% Similarity=0.132 Sum_probs=55.7
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhhCCCCccccc-------CCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCC
Q 047363 10 RNISILAHVDHGKTTLADHLIAATGGGLLHPKL-------AGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSP 82 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~-------~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTP 82 (876)
.+|+|+|.+|+|||||+++|++. ...+.... .|...+.|.+-......+..... .. .+....+.|+|||
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~--~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~-~~-~~~~~~i~lvDtp 77 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRA--NALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGER-VP-PVVPTHVEFVDIA 77 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHH--HTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTB-CC-CEECCEEEEEECC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC--CCcccCCCCceeccceeeEecChHHHHHHHHHhccccc-cc-ccCCceEEEEECC
Confidence 57999999999999999999886 21111000 00000000000000000000000 00 0124679999999
Q ss_pred CCccch-------HHHHHHHHhcCeEEEEEcCCC
Q 047363 83 GHMDFC-------SEVSTAARLSDGALVLVDAVE 109 (876)
Q Consensus 83 Gh~dF~-------~e~~~al~~aDgaIlVvDa~e 109 (876)
|...+. ......++.+|++++|+|+.+
T Consensus 78 Gl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 78 GLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp SCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred CccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 998762 456778999999999999986
No 200
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.25 E-value=6.9e-06 Score=87.83 Aligned_cols=122 Identities=15% Similarity=0.118 Sum_probs=70.5
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccC--hhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccc
Q 047363 10 RNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDY--LDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDF 87 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~--~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF 87 (876)
.|++|+|+.|+|||||++.|.+... . ..|.+.+... ......+++.+-..... -...++++|+||..+.
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~--~----~~G~i~~~g~~i~~~~~~~~i~~v~q~~~---~~~~ltv~d~~~~g~~ 73 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQV--S----RKASSWNREEKIPKTVEIKAIGHVIEEGG---VKMKLTVIDTPGFGDQ 73 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------------------CCCCCSCCEEEESCC-------CCEEEEECCCC--CC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCC--C----CCCccccCCcccCcceeeeeeEEEeecCC---CcCCceEEechhhhhh
Confidence 4899999999999999999988621 1 1132222110 00011122221111000 0236899999996542
Q ss_pred h---------H-----HHHHHH--------------HhcCeEEEEEcCC-CccccchHHHHHHhhhhcCCcEEEEecccc
Q 047363 88 C---------S-----EVSTAA--------------RLSDGALVLVDAV-EGVHIQTHAVLRQSWIEKLTPCLVLNKIDR 138 (876)
Q Consensus 88 ~---------~-----e~~~al--------------~~aDgaIlVvDa~-egv~~~t~~~l~~~~~~~ip~ilviNKiD~ 138 (876)
. . .....+ ..++++++++|.. +|.......+++.+.+. +++|+|+||+|.
T Consensus 74 ~~~~~~~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~-~~vI~Vi~K~D~ 152 (270)
T 3sop_A 74 INNENCWEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV-VNIIPVIAKADT 152 (270)
T ss_dssp SBCTTCSHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT-SEEEEEETTGGG
T ss_pred cccHHHHHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc-CcEEEEEecccc
Confidence 1 0 111111 1247788899954 88888888888888766 999999999998
Q ss_pred ccc
Q 047363 139 LIS 141 (876)
Q Consensus 139 ~~~ 141 (876)
+..
T Consensus 153 lt~ 155 (270)
T 3sop_A 153 MTL 155 (270)
T ss_dssp SCH
T ss_pred CCH
Confidence 753
No 201
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.23 E-value=1.9e-07 Score=104.50 Aligned_cols=119 Identities=9% Similarity=0.087 Sum_probs=69.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccch-
Q 047363 10 RNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDFC- 88 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF~- 88 (876)
++|+++|.+|+|||||+|+|++.. .+.++. .... ....|.|.....+ .+. ..+.++||||..+..
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~-~~~~~~----~~~~------~~~~gtT~~~~~~--~~~-~~~~liDtPG~~~~~~ 226 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEF-SDETEN----VITT------SHFPGTTLDLIDI--PLD-EESSLYDTPGIINHHQ 226 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHH-TTSCSS----CCEE------ECCC----CEEEE--ESS-SSCEEEECCCBCCTTS
T ss_pred ceEEEecCCCCChhHHHHHHHhhh-cccccc----ceec------CCCCCeecceEEE--Eec-CCeEEEeCCCcCcHHH
Confidence 579999999999999999999872 111000 0000 1112444433322 222 248999999976532
Q ss_pred ------HHHHHH---HHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccccc
Q 047363 89 ------SEVSTA---ARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLISE 142 (876)
Q Consensus 89 ------~e~~~a---l~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~~e 142 (876)
.+.... ....+.+++++|+...........+.++...++|+++|+||+|.....
T Consensus 227 ~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~~~~~~~~v~nk~d~~~~~ 289 (368)
T 3h2y_A 227 MAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLARFDYVSGGRRAFTCHFSNRLTIHRT 289 (368)
T ss_dssp GGGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEEEE
T ss_pred HHHHhhHHHHHHhccccccCceEEEEcCCCEEEEcceEEEEEecCCCceEEEEecCccccccc
Confidence 222222 255688899999853322211111333445678999999999998543
No 202
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.22 E-value=3.9e-06 Score=95.06 Aligned_cols=115 Identities=14% Similarity=0.170 Sum_probs=68.5
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcC----eEEEEEcCCCC
Q 047363 9 IRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKD----YAINLIDSPGH 84 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~----~~inlIDTPGh 84 (876)
+.|++|+|+.|+|||||++.|++....| .. .... ..+.+.. .+.+.+.. ..++++|+||.
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~l~g--------~~-~~~~-----~~~~~~~--~i~~v~Q~~~l~~~ltv~D~~~~ 105 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTKFEG--------EP-ATHT-----QPGVQLQ--SNTYDLQESNVRLKLTIVSTVGF 105 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSCC----------------C-----CSSCEEE--EEEEEEEC--CEEEEEEEEEECC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCccccC--------Cc-CCCC-----CccceEe--eEEEEeecCccccccchhhhhhh
Confidence 4679999999999999999997651111 00 0000 0112222 12222221 26899999997
Q ss_pred ccch--------------HHHHHHHHh-------------c--C-eEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEe
Q 047363 85 MDFC--------------SEVSTAARL-------------S--D-GALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLN 134 (876)
Q Consensus 85 ~dF~--------------~e~~~al~~-------------a--D-gaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviN 134 (876)
.+.. .....++.. + | ++++|+|+..+.......+++.+. .++|+|+|+|
T Consensus 106 g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~-~~~~vI~Vi~ 184 (427)
T 2qag_B 106 GDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD-SKVNIIPIIA 184 (427)
T ss_dssp CC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC-SCSEEEEEES
T ss_pred hhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh-hCCCEEEEEc
Confidence 6531 111111111 1 2 467788998888888888888776 7899999999
Q ss_pred cccccc
Q 047363 135 KIDRLI 140 (876)
Q Consensus 135 KiD~~~ 140 (876)
|+|.+.
T Consensus 185 KtD~Lt 190 (427)
T 2qag_B 185 KADAIS 190 (427)
T ss_dssp CGGGSC
T ss_pred chhccc
Confidence 999874
No 203
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.22 E-value=2.7e-06 Score=92.46 Aligned_cols=121 Identities=16% Similarity=0.213 Sum_probs=60.9
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEE--EcCeEEEEEcCCCC---
Q 047363 10 RNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALH--YKDYAINLIDSPGH--- 84 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~--~~~~~inlIDTPGh--- 84 (876)
.+|+|+|+.|+|||||+++|... .-... .| +.+.. ..... ++......+.+. .....++++||||.
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g~--~~~~~---~g-i~~~g-~~~~~--t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~ 89 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFLT--DLYPE---RV-ISGAA-EKIER--TVQIEASTVEIEERGVKLRLTVVDTPGYGDA 89 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC---------------------------------CEEEEC---CCEEEEEEEEC-----
T ss_pred EEEEEECCCCCCHHHHHHHHhCC--CccCC---CC-cccCC-cccCC--cceEeeEEEEecCCCcccCcchhhhhhhhhh
Confidence 57899999999999999998643 10000 11 11000 00000 011111111111 12367899999998
Q ss_pred ----ccchHHHH-------HHHHhcC-------------eEEEEEcCCC-ccccchHHHHHHhhhhcCCcEEEEeccccc
Q 047363 85 ----MDFCSEVS-------TAARLSD-------------GALVLVDAVE-GVHIQTHAVLRQSWIEKLTPCLVLNKIDRL 139 (876)
Q Consensus 85 ----~dF~~e~~-------~al~~aD-------------gaIlVvDa~e-gv~~~t~~~l~~~~~~~ip~ilviNKiD~~ 139 (876)
..|...+. ..++.+. ++|+++++.. +.......+++.+. .++|+++|+||.|+.
T Consensus 90 ~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~-~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 90 INCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH-NKVNIVPVIAKADTL 168 (301)
T ss_dssp ------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHT-TTSCEEEEECCGGGS
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHH-hcCCEEEEEEeCCCC
Confidence 34432222 4444433 2555566543 46655555555543 467999999999997
Q ss_pred c
Q 047363 140 I 140 (876)
Q Consensus 140 ~ 140 (876)
.
T Consensus 169 ~ 169 (301)
T 2qnr_A 169 T 169 (301)
T ss_dssp C
T ss_pred C
Confidence 4
No 204
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.21 E-value=2.1e-06 Score=97.46 Aligned_cols=118 Identities=15% Similarity=0.206 Sum_probs=61.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEE--c--CeEEEEEcCCCCc
Q 047363 10 RNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHY--K--DYAINLIDSPGHM 85 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~--~--~~~inlIDTPGh~ 85 (876)
.+|+|+|+.|+|||||+++|++. .-.. .. .+.... +. .. |+....+.+.. . ...++++||||..
T Consensus 32 f~I~lvG~sGaGKSTLln~L~g~--~~~~-~~-~~~~~~-~~---~~----t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~ 99 (418)
T 2qag_C 32 FTLMVVGESGLGKSTLINSLFLT--DLYS-PE-YPGPSH-RI---KK----TVQVEQSKVLIKEGGVQLLLTIVDTPGFG 99 (418)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTC--CCCC-CC-CCSCC-------------CCEEEEEECC------CEEEEEEECC---
T ss_pred EEEEEECCCCCcHHHHHHHHhCC--CCCC-CC-CCCccc-CC---cc----ceeeeeEEEEEecCCcccceeeeechhhh
Confidence 46899999999999999999765 1100 00 111100 00 00 11111111111 1 2478999999987
Q ss_pred cchH------HH--------HHH-----------HHhc--CeEEEEEcCC-CccccchHHHHHHhhhhcCCcEEEEeccc
Q 047363 86 DFCS------EV--------STA-----------ARLS--DGALVLVDAV-EGVHIQTHAVLRQSWIEKLTPCLVLNKID 137 (876)
Q Consensus 86 dF~~------e~--------~~a-----------l~~a--DgaIlVvDa~-egv~~~t~~~l~~~~~~~ip~ilviNKiD 137 (876)
++.. .+ ... ++.+ +++|+++++. .+.......+++.+.. ++|+|+|+||+|
T Consensus 100 ~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~-~v~iIlVinK~D 178 (418)
T 2qag_C 100 DAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAKAD 178 (418)
T ss_dssp --------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT-TSEEEEEEESTT
T ss_pred hhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc-cCcEEEEEEccc
Confidence 7531 11 111 1123 3455555554 5676666566666654 899999999999
Q ss_pred ccc
Q 047363 138 RLI 140 (876)
Q Consensus 138 ~~~ 140 (876)
+..
T Consensus 179 ll~ 181 (418)
T 2qag_C 179 TLT 181 (418)
T ss_dssp SSC
T ss_pred Ccc
Confidence 874
No 205
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.16 E-value=1.5e-06 Score=97.71 Aligned_cols=82 Identities=18% Similarity=0.180 Sum_probs=48.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEc-----------------
Q 047363 10 RNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYK----------------- 72 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~----------------- 72 (876)
..|+|+|.+|+|||||+++|++. .-.++. ..+.|+......+.+.
T Consensus 23 ~kvgIVG~pnvGKSTL~n~Ltg~--~~~~~~----------------~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~ 84 (396)
T 2ohf_A 23 LKIGIVGLPNVGKSTFFNVLTNS--QASAEN----------------FPFCTIDPNESRVPVPDERFDFLCQYHKPASKI 84 (396)
T ss_dssp CCEEEECCSSSSHHHHHHHHHC-------------------------------CCSEEEEECCCHHHHHHHHHHCCSEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHCC--CccccC----------------CCccccCceeEEEEECCccceeeccccCccccc
Confidence 56999999999999999999755 211110 0111222222222221
Q ss_pred CeEEEEEcCCCCccchH-------HHHHHHHhcCeEEEEEcCCC
Q 047363 73 DYAINLIDSPGHMDFCS-------EVSTAARLSDGALVLVDAVE 109 (876)
Q Consensus 73 ~~~inlIDTPGh~dF~~-------e~~~al~~aDgaIlVvDa~e 109 (876)
...+.++||||...+.. .....++.+|++++|||+.+
T Consensus 85 ~~~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 85 PAFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp CCEEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC--
T ss_pred ccccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCC
Confidence 34699999999988654 56788999999999999975
No 206
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.14 E-value=5.5e-07 Score=99.49 Aligned_cols=61 Identities=25% Similarity=0.267 Sum_probs=39.4
Q ss_pred cCeEEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEeccccc
Q 047363 72 KDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRL 139 (876)
Q Consensus 72 ~~~~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~ 139 (876)
.++.+.||||||..+-. ......+|.+++|+|+..+...+ .+.. ....+|.++++||+|+.
T Consensus 146 ~~~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~--~i~~--~i~~~~~ivvlNK~Dl~ 206 (337)
T 2qm8_A 146 AGFDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQ--GIKK--GIFELADMIAVNKADDG 206 (337)
T ss_dssp TTCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC--------CCT--THHHHCSEEEEECCSTT
T ss_pred CCCCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHH--HHHH--HHhccccEEEEEchhcc
Confidence 57899999999976532 23357899999999986543211 0000 11245889999999975
No 207
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.03 E-value=1.5e-06 Score=99.13 Aligned_cols=123 Identities=16% Similarity=0.213 Sum_probs=68.7
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChh----------h-hhhcceeeeeeE------EEE-
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLD----------E-EQRRAITMKSSS------IAL- 69 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~----------~-E~~rgiti~~~~------i~~- 69 (876)
..++|+++|++|+||||++..|..... .. ..++.+.+..+ . ....|+.+.... ..+
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~-----~~-G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~ 171 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQ-----KR-GLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIV 171 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHH-----HH-HCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-----Hc-CCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHH
Confidence 357899999999999999999987510 00 00111111100 0 000111110000 000
Q ss_pred -----EEcCeEEEEEcCCCCccchHHHHHHH------HhcCeEEEEEcCCCccccchHHHHHHhhhhcC-C-cEEEEecc
Q 047363 70 -----HYKDYAINLIDSPGHMDFCSEVSTAA------RLSDGALVLVDAVEGVHIQTHAVLRQSWIEKL-T-PCLVLNKI 136 (876)
Q Consensus 70 -----~~~~~~inlIDTPGh~dF~~e~~~al------~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~i-p-~ilviNKi 136 (876)
.+.++.+.||||||...........+ ..+|.+++|+|+..|. ......+.. ...+ | ..+|+||+
T Consensus 172 ~~~l~~~~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~--~~~~~~~~~-~~~~~~i~gvVlnK~ 248 (432)
T 2v3c_C 172 KEGMEKFKKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ--QAGIQAKAF-KEAVGEIGSIIVTKL 248 (432)
T ss_dssp HHHHHTTSSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG--GHHHHHHHH-HTTSCSCEEEEEECS
T ss_pred HHHHHHhhCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH--HHHHHHHHH-hhcccCCeEEEEeCC
Confidence 01468899999999876533333322 2478999999998774 222222222 2346 6 67899999
Q ss_pred ccc
Q 047363 137 DRL 139 (876)
Q Consensus 137 D~~ 139 (876)
|..
T Consensus 249 D~~ 251 (432)
T 2v3c_C 249 DGS 251 (432)
T ss_dssp SSC
T ss_pred CCc
Confidence 985
No 208
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=98.02 E-value=7.3e-06 Score=93.43 Aligned_cols=123 Identities=19% Similarity=0.159 Sum_probs=72.2
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhC-C-CCcccccCCceeeccChh-----------hhhhcceeeeeeE-----E-
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATG-G-GLLHPKLAGKLRFMDYLD-----------EEQRRAITMKSSS-----I- 67 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~-~-g~i~~~~~g~~~~~d~~~-----------~E~~rgiti~~~~-----i- 67 (876)
...++|+++|+.|+||||++..|..... . |. ++.+.|..+ .....|+.+-... .
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~-------kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~ 170 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKK-------KVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVD 170 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCC-------CEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCC-------eEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHH
Confidence 3568999999999999999999986621 1 11 111111110 0112233322110 0
Q ss_pred -------EEEEcCeEEEEEcCCCCccchHHHHHH------HHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCc-EEEE
Q 047363 68 -------ALHYKDYAINLIDSPGHMDFCSEVSTA------ARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTP-CLVL 133 (876)
Q Consensus 68 -------~~~~~~~~inlIDTPGh~dF~~e~~~a------l~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~-ilvi 133 (876)
.+.+.+|.+.||||||...+......+ +...|.+++|+|+..|. ......+.. ..++++ -+|+
T Consensus 171 i~~~~l~~~~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~--~~~~~~~~f-~~~l~i~gvVl 247 (433)
T 2xxa_A 171 IVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQ--DAANTAKAF-NEALPLTGVVL 247 (433)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCT--THHHHHHHH-HHHSCCCCEEE
T ss_pred HHHHHHHHHHhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhH--HHHHHHHHH-hccCCCeEEEE
Confidence 011246899999999987765444433 33578999999998662 222222222 234664 4799
Q ss_pred eccccc
Q 047363 134 NKIDRL 139 (876)
Q Consensus 134 NKiD~~ 139 (876)
||+|..
T Consensus 248 nK~D~~ 253 (433)
T 2xxa_A 248 TKVDGD 253 (433)
T ss_dssp ECTTSS
T ss_pred ecCCCC
Confidence 999985
No 209
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.97 E-value=8e-06 Score=92.86 Aligned_cols=124 Identities=15% Similarity=0.158 Sum_probs=70.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeecc--C-hhh--h------hhcceeeeeeE----------
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMD--Y-LDE--E------QRRAITMKSSS---------- 66 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d--~-~~~--E------~~rgiti~~~~---------- 66 (876)
+-+.|+++|+.|+||||++..|..... . ..+++.+.+ . ++. + ...|+.+....
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~-----~-~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~ 169 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYK-----K-RGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAK 169 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHH-----H-TTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-----H-cCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHH
Confidence 357899999999999999999976510 0 011221111 1 110 0 11132211100
Q ss_pred ---EEEEEcCeEEEEEcCCCCcc------chHHHHHHHHh--cCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEec
Q 047363 67 ---IALHYKDYAINLIDSPGHMD------FCSEVSTAARL--SDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNK 135 (876)
Q Consensus 67 ---i~~~~~~~~inlIDTPGh~d------F~~e~~~al~~--aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNK 135 (876)
..+...++.+.||||||... +..++....+. .|.+++|+|+..|.. ...+.+...+.--+..+|+||
T Consensus 170 ~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~--a~~~a~~f~~~~~~~gVIlTK 247 (433)
T 3kl4_A 170 KGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQK--AYDLASRFHQASPIGSVIITK 247 (433)
T ss_dssp HHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGG--GHHHHHHHHHHCSSEEEEEEC
T ss_pred HHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchH--HHHHHHHHhcccCCcEEEEec
Confidence 00111368899999999755 44454443333 489999999987632 233333333333456789999
Q ss_pred cccc
Q 047363 136 IDRL 139 (876)
Q Consensus 136 iD~~ 139 (876)
+|..
T Consensus 248 lD~~ 251 (433)
T 3kl4_A 248 MDGT 251 (433)
T ss_dssp GGGC
T ss_pred cccc
Confidence 9986
No 210
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.96 E-value=7.3e-06 Score=88.85 Aligned_cols=122 Identities=16% Similarity=0.121 Sum_probs=71.8
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChh-----hh------hhcceeeeeeE-----E-----
Q 047363 9 IRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLD-----EE------QRRAITMKSSS-----I----- 67 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~-----~E------~~rgiti~~~~-----i----- 67 (876)
.+.|+++|+.|+||||++..|..... . ..+++.+.|... .+ ...|+.+-... .
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~-----~-~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~ 171 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYK-----K-KGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKR 171 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHH-----H-TTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-----H-CCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHH
Confidence 56899999999999999999976510 0 012332222211 01 11233321110 0
Q ss_pred ---EEEEcCeEEEEEcCCCCcc--chHHHH------HHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCC-cEEEEec
Q 047363 68 ---ALHYKDYAINLIDSPGHMD--FCSEVS------TAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLT-PCLVLNK 135 (876)
Q Consensus 68 ---~~~~~~~~inlIDTPGh~d--F~~e~~------~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip-~ilviNK 135 (876)
.+.+.++.+.||||||... ...... .++..+|.+++|+|+..| .......+...+ .+| ..+|+||
T Consensus 172 ~l~~~~~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g--~~~~~~~~~~~~-~~~i~gvVlnk 248 (297)
T 1j8m_F 172 GVEKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG--QKAYDLASKFNQ-ASKIGTIIITK 248 (297)
T ss_dssp HHHHHHHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG--GGHHHHHHHHHH-TCTTEEEEEEC
T ss_pred HHHHHHhCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch--HHHHHHHHHHHh-hCCCCEEEEeC
Confidence 0012468899999999887 433322 345578999999999754 223333333222 477 5578999
Q ss_pred cccc
Q 047363 136 IDRL 139 (876)
Q Consensus 136 iD~~ 139 (876)
+|..
T Consensus 249 ~D~~ 252 (297)
T 1j8m_F 249 MDGT 252 (297)
T ss_dssp GGGC
T ss_pred CCCC
Confidence 9975
No 211
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=97.93 E-value=1.9e-05 Score=88.67 Aligned_cols=82 Identities=13% Similarity=0.103 Sum_probs=55.7
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhhCCC-CcccccCCceeeccChhhhhhcceeeeeeEEEEEEc----------------
Q 047363 10 RNISILAHVDHGKTTLADHLIAATGGG-LLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYK---------------- 72 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~t~~g-~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~---------------- 72 (876)
..|+|+|++|+|||||+++|++. .. .++.. .+.|+......+.+.
T Consensus 21 ~~vgiVG~pnaGKSTL~n~Ltg~--~~a~~~~~----------------p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~ 82 (392)
T 1ni3_A 21 LKTGIVGMPNVGKSTFFRAITKS--VLGNPANY----------------PYATIDPEEAKVAVPDERFDWLCEAYKPKSR 82 (392)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHS--TTTSTTCC----------------SSCCCCTTEEEEEECCHHHHHHHHHHCCSEE
T ss_pred CEEEEECCCCCCHHHHHHHHHCC--CcccccCC----------------CceeecceeeeeeeCCcchhhhhhhcccccc
Confidence 57999999999999999999885 21 11110 011222222222222
Q ss_pred -CeEEEEEcCCCCcc-------chHHHHHHHHhcCeEEEEEcCCC
Q 047363 73 -DYAINLIDSPGHMD-------FCSEVSTAARLSDGALVLVDAVE 109 (876)
Q Consensus 73 -~~~inlIDTPGh~d-------F~~e~~~al~~aDgaIlVvDa~e 109 (876)
...+.++||||... +.......++.+|+++.|+|+.+
T Consensus 83 v~~~i~lvD~pGl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 83 VPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp ECEEEEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred cCcceEEEeccccccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 24689999999765 34567888999999999999975
No 212
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.91 E-value=2.4e-05 Score=88.99 Aligned_cols=123 Identities=15% Similarity=0.118 Sum_probs=68.5
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhhC-CCCcccccCCceeec--cChh---------hhhhcceeeeeeEE--------
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAATG-GGLLHPKLAGKLRFM--DYLD---------EEQRRAITMKSSSI-------- 67 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t~-~g~i~~~~~g~~~~~--d~~~---------~E~~rgiti~~~~i-------- 67 (876)
+.+.|+++|.+|+||||++..|..... .| .++.+. |... .....|+.+.....
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G-------~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~ 171 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRG-------YKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLA 171 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTT-------CCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCC-------CeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHH
Confidence 357899999999999999999986511 11 112111 1110 01112332211000
Q ss_pred -----EEEEcCeEEEEEcCCCCccchHHHH------HHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCc-EEEEec
Q 047363 68 -----ALHYKDYAINLIDSPGHMDFCSEVS------TAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTP-CLVLNK 135 (876)
Q Consensus 68 -----~~~~~~~~inlIDTPGh~dF~~e~~------~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~-ilviNK 135 (876)
.+...++.+.||||||......+.. ......|.+++|+|+..|.. .....+...+ .+++ .+|+||
T Consensus 172 ~~al~~a~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~--a~~~a~~f~~-~~~i~gVIlTK 248 (443)
T 3dm5_A 172 KEGVDYFKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQ--AYNQALAFKE-ATPIGSIIVTK 248 (443)
T ss_dssp HHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG--HHHHHHHHHH-SCTTEEEEEEC
T ss_pred HHHHHHHHhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchh--HHHHHHHHHh-hCCCeEEEEEC
Confidence 0001248999999999655432222 22334689999999987632 2223332222 3444 589999
Q ss_pred ccccc
Q 047363 136 IDRLI 140 (876)
Q Consensus 136 iD~~~ 140 (876)
+|...
T Consensus 249 lD~~~ 253 (443)
T 3dm5_A 249 LDGSA 253 (443)
T ss_dssp CSSCS
T ss_pred CCCcc
Confidence 99864
No 213
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=97.89 E-value=1.1e-05 Score=89.54 Aligned_cols=82 Identities=13% Similarity=0.050 Sum_probs=62.1
Q ss_pred ceeeeeeEEEEEEcCeEEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCccc-----------cchHHHHHHhhh---
Q 047363 59 AITMKSSSIALHYKDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVH-----------IQTHAVLRQSWI--- 124 (876)
Q Consensus 59 giti~~~~i~~~~~~~~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv~-----------~~t~~~l~~~~~--- 124 (876)
..|+......+.+++..+.+|||+|+..|...+..+++.++++|+|+|.++-.+ ......+.....
T Consensus 178 ~~T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~ 257 (353)
T 1cip_A 178 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKW 257 (353)
T ss_dssp CCCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGG
T ss_pred CceeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCcc
Confidence 345544556677789999999999999999999999999999999999987321 111223333332
Q ss_pred -hcCCcEEEEecccccc
Q 047363 125 -EKLTPCLVLNKIDRLI 140 (876)
Q Consensus 125 -~~ip~ilviNKiD~~~ 140 (876)
.++|+|||+||+|+..
T Consensus 258 ~~~~piiLv~NK~DL~~ 274 (353)
T 1cip_A 258 FTDTSIILFLNKKDLFE 274 (353)
T ss_dssp GTTSEEEEEEECHHHHH
T ss_pred ccCCcEEEEEECcCchh
Confidence 4689999999999864
No 214
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.87 E-value=5.7e-05 Score=77.35 Aligned_cols=119 Identities=18% Similarity=0.221 Sum_probs=63.4
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCC----CcccccCCceeeccChhhhhhcceeeeeeEEEEE------------
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGG----LLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALH------------ 70 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g----~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~------------ 70 (876)
.++++|+|+|++|+|||||+++|+...... .+... .+ +..|....+. .|.. .+.+.
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d-~~--~~~d~~~~~~-~~~~----~~~~~~~~~~~l~~~~~ 107 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGD-VI--AKFDAERMEK-HGAK----VVPLNTGKECHLDAHLV 107 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEE-TT--THHHHHHHHT-TTCE----EEEEECTTCSSCCHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECC-CC--CCccHHHHHh-cCCc----EEEecCCceEeccHHHH
Confidence 357999999999999999999999873211 00000 00 0000000000 0110 11111
Q ss_pred --------EcCeEEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccc
Q 047363 71 --------YKDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 71 --------~~~~~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~ 140 (876)
..++.+.++||+|........ -...+..+.|+|+..+...... .....+.|.++|+||+|+..
T Consensus 108 ~~~~~~l~~~~~d~~~id~~g~i~~~~s~---~~~~~~~~~v~~~~~~~~~~~~----~~~~~~~~~iiv~NK~Dl~~ 178 (226)
T 2hf9_A 108 GHALEDLNLDEIDLLFIENVGNLICPADF---DLGTHKRIVVISTTEGDDTIEK----HPGIMKTADLIVINKIDLAD 178 (226)
T ss_dssp HHHHTTSCGGGCSEEEEECCSCSSGGGGC---CCSCSEEEEEEEGGGCTTTTTT----CHHHHTTCSEEEEECGGGHH
T ss_pred HHHHHHHhcCCCCEEEEeCCCCccCcchh---hhccCcEEEEEecCcchhhHhh----hhhHhhcCCEEEEeccccCc
Confidence 113478999999953211110 1234566788887554322211 11224689999999999864
No 215
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=97.65 E-value=3.5e-05 Score=85.79 Aligned_cols=81 Identities=17% Similarity=0.140 Sum_probs=54.2
Q ss_pred eeeeeeEEEEEEcCeEEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCcc----------cc-chHHHHHHhh----h
Q 047363 60 ITMKSSSIALHYKDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGV----------HI-QTHAVLRQSW----I 124 (876)
Q Consensus 60 iti~~~~i~~~~~~~~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv----------~~-~t~~~l~~~~----~ 124 (876)
.|+......+.+++..+.+|||+|+..|...+..+++.++++|+|+|.++-. .. .....|.... -
T Consensus 187 ~T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~ 266 (362)
T 1zcb_A 187 PTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVF 266 (362)
T ss_dssp CCSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred CccceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhh
Confidence 3444444567778999999999999999999999999999999999998721 11 1123344332 2
Q ss_pred hcCCcEEEEecccccc
Q 047363 125 EKLTPCLVLNKIDRLI 140 (876)
Q Consensus 125 ~~ip~ilviNKiD~~~ 140 (876)
.++|+|||+||+|+..
T Consensus 267 ~~~piILv~NK~DL~~ 282 (362)
T 1zcb_A 267 SNVSIILFLNKTDLLE 282 (362)
T ss_dssp TTSEEEEEEECHHHHH
T ss_pred CCCCEEEEEEChhhhh
Confidence 4689999999999964
No 216
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.62 E-value=0.00014 Score=73.25 Aligned_cols=117 Identities=18% Similarity=0.219 Sum_probs=76.1
Q ss_pred ceEEEEEeC-CCCcHHHHHHHHHHhhC-CCCcccccCCceeeccChhhhh--------hcceeeeeeEEEEE--------
Q 047363 9 IRNISILAH-VDHGKTTLADHLIAATG-GGLLHPKLAGKLRFMDYLDEEQ--------RRAITMKSSSIALH-------- 70 (876)
Q Consensus 9 irnI~IvG~-~~~GKTTL~~~Ll~~t~-~g~i~~~~~g~~~~~d~~~~E~--------~rgiti~~~~i~~~-------- 70 (876)
++.|+|.+. .|+||||++-.|..... .| .++-+.|..+... ..+.. .+...
T Consensus 1 M~vi~v~s~kgG~GKTt~a~~la~~la~~g-------~~vlliD~D~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~l 69 (206)
T 4dzz_A 1 MKVISFLNPKGGSGKTTAVINIATALSRSG-------YNIAVVDTDPQMSLTNWSKAGKAAFD----VFTAASEKDVYGI 69 (206)
T ss_dssp CEEEEECCSSTTSSHHHHHHHHHHHHHHTT-------CCEEEEECCTTCHHHHHHTTSCCSSE----EEECCSHHHHHTH
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHHCC-------CeEEEEECCCCCCHHHHHhcCCCCCc----EEecCcHHHHHHH
Confidence 467888854 88999999998876511 11 1233333322111 01111 11111
Q ss_pred ---EcCeEEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhh-----cCCcEEEEeccccc
Q 047363 71 ---YKDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIE-----KLTPCLVLNKIDRL 139 (876)
Q Consensus 71 ---~~~~~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~-----~ip~ilviNKiD~~ 139 (876)
-..|.+.|||||+.. ......++..+|.+|+|+.+.... ..+..+++.+.+. ++++.+|+|+.|..
T Consensus 70 ~~l~~~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~ 143 (206)
T 4dzz_A 70 RKDLADYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEM 143 (206)
T ss_dssp HHHTTTSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTT
T ss_pred HHhcCCCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCC
Confidence 025899999999977 467788999999999999987666 6666666666543 35678999999954
No 217
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=97.61 E-value=5.3e-05 Score=83.05 Aligned_cols=84 Identities=18% Similarity=0.147 Sum_probs=62.8
Q ss_pred cceeeeeeEEEEEEcCeEEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCC-------Cccccc----hHHHHHHhh---
Q 047363 58 RAITMKSSSIALHYKDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAV-------EGVHIQ----THAVLRQSW--- 123 (876)
Q Consensus 58 rgiti~~~~i~~~~~~~~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~-------egv~~~----t~~~l~~~~--- 123 (876)
|.-|+......+.+++..+.+|||+|+..|...+..+++.++++|+|+|.+ +.-... ....|+...
T Consensus 151 r~~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~ 230 (327)
T 3ohm_A 151 RVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYP 230 (327)
T ss_dssp CCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSG
T ss_pred cCceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhh
Confidence 344555566778888999999999999999999999999999999999776 221111 122333332
Q ss_pred -hhcCCcEEEEeccccccc
Q 047363 124 -IEKLTPCLVLNKIDRLIS 141 (876)
Q Consensus 124 -~~~ip~ilviNKiD~~~~ 141 (876)
-.++|++||+||+|+...
T Consensus 231 ~~~~~~iiL~~NK~DL~~~ 249 (327)
T 3ohm_A 231 WFQNSSVILFLNKKDLLEE 249 (327)
T ss_dssp GGTTCEEEEEEECHHHHHH
T ss_pred ccCCceEEEEEECchhhhh
Confidence 246899999999999754
No 218
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=97.57 E-value=3.9e-05 Score=84.48 Aligned_cols=83 Identities=20% Similarity=0.173 Sum_probs=62.7
Q ss_pred cceeeeeeEEEEEEcCeEEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCc-------ccc----chHHHHHHhh---
Q 047363 58 RAITMKSSSIALHYKDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEG-------VHI----QTHAVLRQSW--- 123 (876)
Q Consensus 58 rgiti~~~~i~~~~~~~~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~eg-------v~~----~t~~~l~~~~--- 123 (876)
|.-|+......+.+++..+.+|||+|+..|...+..+++.++++|+|+|.++- -.. .....|....
T Consensus 145 ~~~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~ 224 (340)
T 4fid_A 145 RTKTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNE 224 (340)
T ss_dssp CCCCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCG
T ss_pred ccceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhh
Confidence 44455556677788899999999999999999999999999999999999721 111 1123333332
Q ss_pred -hhcCCcEEEEecccccc
Q 047363 124 -IEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 124 -~~~ip~ilviNKiD~~~ 140 (876)
-.++|++||+||+|+..
T Consensus 225 ~~~~~piiLv~NK~DL~~ 242 (340)
T 4fid_A 225 FLKGAVKLIFLNKMDLFE 242 (340)
T ss_dssp GGTTSEEEEEEECHHHHH
T ss_pred ccCCCeEEEEEECchhhh
Confidence 24689999999999864
No 219
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=97.51 E-value=7.2e-05 Score=84.21 Aligned_cols=80 Identities=16% Similarity=0.191 Sum_probs=60.0
Q ss_pred eeeeeEEEEEEcCeEEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCC----------ccccc-hHHHHHHhhh----h
Q 047363 61 TMKSSSIALHYKDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVE----------GVHIQ-THAVLRQSWI----E 125 (876)
Q Consensus 61 ti~~~~i~~~~~~~~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~e----------gv~~~-t~~~l~~~~~----~ 125 (876)
|+......+.+++..+.||||+|+..|...+...++.++++|+|+|.++ .-... ....+..+.. .
T Consensus 204 TiGi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~ 283 (402)
T 1azs_C 204 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLR 283 (402)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCS
T ss_pred eeeeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCC
Confidence 4444445677788999999999999999999999999999999999986 21111 1223333322 4
Q ss_pred cCCcEEEEecccccc
Q 047363 126 KLTPCLVLNKIDRLI 140 (876)
Q Consensus 126 ~ip~ilviNKiD~~~ 140 (876)
++|+|||+||+|+..
T Consensus 284 ~~piiLvgNK~DL~~ 298 (402)
T 1azs_C 284 TISVILFLNKQDLLA 298 (402)
T ss_dssp SCCEEEEEECHHHHH
T ss_pred CCeEEEEEEChhhhh
Confidence 689999999999853
No 220
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.46 E-value=0.00019 Score=81.24 Aligned_cols=115 Identities=13% Similarity=0.087 Sum_probs=67.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcC-eEEEEEcCCCCccc-
Q 047363 10 RNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKD-YAINLIDSPGHMDF- 87 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~-~~inlIDTPGh~dF- 87 (876)
..++|+|+.|+|||||++.|.+. +.+ ..|.+.+.. .... .+++ .+.... ..++++|+||...-
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl-----~~p-~~GsI~~~g-~~~t-~~~~-------v~q~~~~~~ltv~D~~g~~~~~ 134 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGI-----GNE-EEGAAKTGV-VEVT-MERH-------PYKHPNIPNVVFWDLPGIGSTN 134 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTC-----CTT-STTSCCCCC------CCCE-------EEECSSCTTEEEEECCCGGGSS
T ss_pred eEEEEECCCCCcHHHHHHHHhCC-----CCc-cCceEEECC-eecc-eeEE-------eccccccCCeeehHhhcccchH
Confidence 38999999999999999999773 110 112222111 0000 1121 111112 25899999996421
Q ss_pred --hHHHHHHH--HhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEeccccccc
Q 047363 88 --CSEVSTAA--RLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLIS 141 (876)
Q Consensus 88 --~~e~~~al--~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~~ 141 (876)
..+....+ ...|..++ +|... .+.|...+.+.+...+.|+++|+||.|.+..
T Consensus 135 ~~~~~~L~~~~L~~~~~~~~-lS~G~-~~kqrv~la~aL~~~~~p~~lV~tkpdlllL 190 (413)
T 1tq4_A 135 FPPDTYLEKMKFYEYDFFII-ISATR-FKKNDIDIAKAISMMKKEFYFVRTKVDSDIT 190 (413)
T ss_dssp CCHHHHHHHTTGGGCSEEEE-EESSC-CCHHHHHHHHHHHHTTCEEEEEECCHHHHHH
T ss_pred HHHHHHHHHcCCCccCCeEE-eCCCC-ccHHHHHHHHHHHhcCCCeEEEEecCccccc
Confidence 22333322 22344443 66643 3556666777777788999999999999753
No 221
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.44 E-value=0.00022 Score=77.99 Aligned_cols=121 Identities=16% Similarity=0.208 Sum_probs=67.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChh--h---h----h-----hcceeee-eeEEE----
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLD--E---E----Q-----RRAITMK-SSSIA---- 68 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~--~---E----~-----~rgiti~-~~~i~---- 68 (876)
..+.|+|+|+.|+||||++..|.... .. ..+++.+.|... . + . ..++.+- .....
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l-----~~-~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~~p~ 177 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYY-----AE-LGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNADPA 177 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHH-----HH-TTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTCCHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-----HH-CCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCCCHH
Confidence 45789999999999999999997651 11 113333322211 0 0 0 1233221 00000
Q ss_pred ------E---EEcCeEEEEEcCCCCccchHHHHHHHH------------hcCeEEEEEcCCCccccchHHHHHHhhhh--
Q 047363 69 ------L---HYKDYAINLIDSPGHMDFCSEVSTAAR------------LSDGALVLVDAVEGVHIQTHAVLRQSWIE-- 125 (876)
Q Consensus 69 ------~---~~~~~~inlIDTPGh~dF~~e~~~al~------------~aDgaIlVvDa~egv~~~t~~~l~~~~~~-- 125 (876)
+ ...+|.+.||||||...........+. .+|.+++|+|+..+ . ..+.++...
T Consensus 178 ~~~~~~l~~~~~~~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~--~---~~l~~~~~~~~ 252 (320)
T 1zu4_A 178 SVVFDAIKKAKEQNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG--Q---NGVIQAEEFSK 252 (320)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT--H---HHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc--H---HHHHHHHHHhh
Confidence 0 012689999999997765332222221 26899999999754 1 222333322
Q ss_pred cCCcE-EEEeccccc
Q 047363 126 KLTPC-LVLNKIDRL 139 (876)
Q Consensus 126 ~ip~i-lviNKiD~~ 139 (876)
.+++. +|+||+|..
T Consensus 253 ~~~i~GvVltk~d~~ 267 (320)
T 1zu4_A 253 VADVSGIILTKMDST 267 (320)
T ss_dssp TSCCCEEEEECGGGC
T ss_pred cCCCcEEEEeCCCCC
Confidence 24443 789999974
No 222
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=97.42 E-value=8.1e-05 Score=87.70 Aligned_cols=104 Identities=14% Similarity=0.132 Sum_probs=57.2
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCcc
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMD 86 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~d 86 (876)
.++..|+|+|.+|+|||||+|+|++. ...+. ..+.. ....+|+.+...++. ...+..+.|+||||..+
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~--~~~~~--~~~tt-------~~~T~gi~~~~~~~~-~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGK--KKGFS--LGSTV-------QSHTKGIWMWCVPHP-KKPGHILVLLDTEGLGD 103 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTC--SSCSC--CCCSS-------SCCCCSEEEEEEECS-SSTTCEEEEEEECCBCC
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCC--CCccc--cCCCC-------CCceeEEEEeecccc-cCCCceEEEecCCCcCc
Confidence 45678999999999999999999765 21111 01110 001122221100000 12467899999999775
Q ss_pred chH------HHHHHHHhcCeEEEEEcCCCccccchHHHHHHh
Q 047363 87 FCS------EVSTAARLSDGALVLVDAVEGVHIQTHAVLRQS 122 (876)
Q Consensus 87 F~~------e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~ 122 (876)
... ...-++...-..++|+|+..++..+...++..+
T Consensus 104 ~~~~~~~~~~~~fala~llss~lv~n~~~~i~~~dl~~l~~v 145 (592)
T 1f5n_A 104 VEKGDNQNDSWIFALAVLLSSTFVYNSIGTINQQAMDQLYYV 145 (592)
T ss_dssp GGGCCCTTHHHHHHHHHHHCSEEEEEEESCSSHHHHHTTHHH
T ss_pred ccccchhHHHHHHHHHHHhcCeEEEECCCCccHHHHHHHHHH
Confidence 422 111122221223777888777776665554443
No 223
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=97.35 E-value=9.7e-05 Score=75.56 Aligned_cols=121 Identities=16% Similarity=0.045 Sum_probs=75.1
Q ss_pred EEEEEeC-CCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhc---ce-eeeeeEEE-----EEEcCeEEEEEc
Q 047363 11 NISILAH-VDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRR---AI-TMKSSSIA-----LHYKDYAINLID 80 (876)
Q Consensus 11 nI~IvG~-~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~r---gi-ti~~~~i~-----~~~~~~~inlID 80 (876)
.|+|.+. .|+||||++-.|.... ... |++.+.|..+..... +. .+....+. -....|.+.+||
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~l-----a~~--g~VlliD~D~q~~~~~~~~~~~l~~~vi~~~~l~~l~~~yD~viiD 74 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYL-----ALQ--GETLLIDGDPNRSATGWGKRGSLPFKVVDERQAAKYAPKYQNIVID 74 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHH-----HTT--SCEEEEEECTTCHHHHHHHHSCCSSEEEEGGGHHHHGGGCSEEEEE
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHH-----Hhc--CCEEEEECCCCCCHHHHhcCCCCCcceeCHHHHHHhhhcCCEEEEe
Confidence 4677654 8999999999997661 111 244444433321000 00 00000000 002368999999
Q ss_pred CCCC-ccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhh-hcCCcEEEEecccccc
Q 047363 81 SPGH-MDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWI-EKLTPCLVLNKIDRLI 140 (876)
Q Consensus 81 TPGh-~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~-~~ip~ilviNKiD~~~ 140 (876)
||+. .. ..+..++..+|.+|+|+.+.......+...++.+.+ .+.+..+|+|+.|...
T Consensus 75 ~p~~~~~--~~~~~~l~~aD~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~~ 134 (209)
T 3cwq_A 75 TQARPED--EDLEALADGCDLLVIPSTPDALALDALMLTIETLQKLGNNRFRILLTIIPPYP 134 (209)
T ss_dssp EECCCSS--SHHHHHHHTSSEEEEEECSSHHHHHHHHHHHHHHHHTCSSSEEEEECSBCCTT
T ss_pred CCCCcCc--HHHHHHHHHCCEEEEEecCCchhHHHHHHHHHHHHhccCCCEEEEEEecCCcc
Confidence 9997 54 356778899999999999876555555666666655 2678888999998753
No 224
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.29 E-value=0.00034 Score=76.75 Aligned_cols=124 Identities=19% Similarity=0.141 Sum_probs=67.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeec--cC---hhhh------hhcceeeeeeEEEEE------
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFM--DY---LDEE------QRRAITMKSSSIALH------ 70 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~--d~---~~~E------~~rgiti~~~~i~~~------ 70 (876)
+-..|+++|+.|+|||||+..|.+.. . ...|++.+. |. ...+ +..|+.+-.....+.
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l-----~-~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~ 201 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWL-----K-NHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAY 201 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH-----H-HTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-----H-hcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHH
Confidence 34679999999999999999998751 1 112333221 11 1111 112332211000000
Q ss_pred -------EcCeEEEEEcCCCCccc----hHHHHHH--HHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEeccc
Q 047363 71 -------YKDYAINLIDSPGHMDF----CSEVSTA--ARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKID 137 (876)
Q Consensus 71 -------~~~~~inlIDTPGh~dF----~~e~~~a--l~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD 137 (876)
..++.+.++||+|.... ..+.... .-..|-.++|+|+..+. +....++...+.--..++++||+|
T Consensus 202 e~l~~~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~--~~~~~~~~~~~~~~it~iilTKlD 279 (328)
T 3e70_C 202 DAIQHAKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN--AIVEQARQFNEAVKIDGIILTKLD 279 (328)
T ss_dssp HHHHHHHHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT--HHHHHHHHHHHHSCCCEEEEECGG
T ss_pred HHHHHHHhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH--HHHHHHHHHHHhcCCCEEEEeCcC
Confidence 12466788999997543 3332221 12368899999987662 223333333322234588999999
Q ss_pred cc
Q 047363 138 RL 139 (876)
Q Consensus 138 ~~ 139 (876)
-.
T Consensus 280 ~~ 281 (328)
T 3e70_C 280 AD 281 (328)
T ss_dssp GC
T ss_pred Cc
Confidence 74
No 225
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=97.27 E-value=0.0013 Score=69.37 Aligned_cols=67 Identities=15% Similarity=0.023 Sum_probs=50.3
Q ss_pred cCeEEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcE-EEEecccc
Q 047363 72 KDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPC-LVLNKIDR 138 (876)
Q Consensus 72 ~~~~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~i-lviNKiD~ 138 (876)
..|.+.|||||+..........++..+|.+|+|+.+.......+...++.+.+.+++.+ +|+|+.|.
T Consensus 127 ~~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 194 (262)
T 2ph1_A 127 GELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQELTAVIVEKAINMAEETNTSVLGLVENMSYF 194 (262)
T ss_dssp CSCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSSSCCHHHHHHHHHHHHTTTCCEEEEEETTCCE
T ss_pred cCCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCccchHHHHHHHHHHHHhCCCCEEEEEECCCcc
Confidence 46889999999976543333334457999999999876655556667777777788887 89999985
No 226
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.22 E-value=0.00052 Score=81.53 Aligned_cols=68 Identities=19% Similarity=0.129 Sum_probs=39.9
Q ss_pred eEEEEEcCCCCccc---------hHHHHHHH----Hhc-CeEEEEEcCCCccccc-hHHHHHHhhhhcCCcEEEEecccc
Q 047363 74 YAINLIDSPGHMDF---------CSEVSTAA----RLS-DGALVLVDAVEGVHIQ-THAVLRQSWIEKLTPCLVLNKIDR 138 (876)
Q Consensus 74 ~~inlIDTPGh~dF---------~~e~~~al----~~a-DgaIlVvDa~egv~~~-t~~~l~~~~~~~ip~ilviNKiD~ 138 (876)
-.+.|+|.||...- ...+...+ ..- ..+++++++......+ ...+.+.+...+.+.|+|+||.|+
T Consensus 147 p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dl 226 (608)
T 3szr_A 147 PDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDL 226 (608)
T ss_dssp CCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGG
T ss_pred CceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhh
Confidence 46999999985431 12222222 222 4566666665443322 244556666668899999999999
Q ss_pred ccc
Q 047363 139 LIS 141 (876)
Q Consensus 139 ~~~ 141 (876)
...
T Consensus 227 v~~ 229 (608)
T 3szr_A 227 VDK 229 (608)
T ss_dssp SSS
T ss_pred cCc
Confidence 853
No 227
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.20 E-value=0.00059 Score=78.43 Aligned_cols=123 Identities=16% Similarity=0.177 Sum_probs=65.9
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeec--cChh---hh------hhcceeeeeeEEEEE-------
Q 047363 9 IRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFM--DYLD---EE------QRRAITMKSSSIALH------- 70 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~--d~~~---~E------~~rgiti~~~~i~~~------- 70 (876)
-..|+|+|..|+|||||+..|.+.. . ...|++.+. |... .+ ..+++.+-.....+.
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll-----~-~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e 366 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQF-----E-QQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFD 366 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHH-----H-HTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHHHh-----h-hcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHH
Confidence 3579999999999999999997751 1 112344332 2111 01 123333211100000
Q ss_pred ------EcCeEEEEEcCCCCccc----hHH---HHHHHHh-----cCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEE
Q 047363 71 ------YKDYAINLIDSPGHMDF----CSE---VSTAARL-----SDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLV 132 (876)
Q Consensus 71 ------~~~~~inlIDTPGh~dF----~~e---~~~al~~-----aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilv 132 (876)
..++.+.||||+|.... ..+ +.+.++. -+-++||+|+..|.. ....++...+.--...++
T Consensus 367 ~l~~a~~~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~--al~~ak~f~~~~~itgvI 444 (503)
T 2yhs_A 367 AIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQN--AVSQAKLFHEAVGLTGIT 444 (503)
T ss_dssp HHHHHHHTTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHH--HHHHHHHHHHHTCCSEEE
T ss_pred HHHHHHhcCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHH--HHHHHHHHHhhcCCCEEE
Confidence 12577899999997543 222 2222221 346799999886632 122222222221235689
Q ss_pred Eeccccc
Q 047363 133 LNKIDRL 139 (876)
Q Consensus 133 iNKiD~~ 139 (876)
+||+|..
T Consensus 445 lTKLD~t 451 (503)
T 2yhs_A 445 LTKLDGT 451 (503)
T ss_dssp EECGGGC
T ss_pred EEcCCCc
Confidence 9999974
No 228
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.13 E-value=0.001 Score=75.45 Aligned_cols=123 Identities=23% Similarity=0.251 Sum_probs=67.4
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccCh-----hhhh------hcceeeeeeE-----EEE--
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYL-----DEEQ------RRAITMKSSS-----IAL-- 69 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~-----~~E~------~rgiti~~~~-----i~~-- 69 (876)
..+.|+++|+.|+||||++..|...... . .+++.+.|.. ..++ ..|+.+-... ..+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~-----~-g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~ 170 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKG-----K-GRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRR 170 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT-----T-TCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH-----c-CCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHH
Confidence 3568999999999999999999876111 0 1222221111 1111 1233221110 000
Q ss_pred ------EEcCeEEEEEcCCCCccchH----HHH--HHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCC-cEEEEecc
Q 047363 70 ------HYKDYAINLIDSPGHMDFCS----EVS--TAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLT-PCLVLNKI 136 (876)
Q Consensus 70 ------~~~~~~inlIDTPGh~dF~~----e~~--~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip-~ilviNKi 136 (876)
...+|.+.||||||...... ++. ..+...|.+++|+|+..+ .......+... ..++ .-+|+||+
T Consensus 171 ~~l~~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tg--q~av~~a~~f~-~~l~i~GVIlTKl 247 (425)
T 2ffh_A 171 RVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG--QEALSVARAFD-EKVGVTGLVLTKL 247 (425)
T ss_dssp HHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT--THHHHHHHHHH-HHTCCCEEEEESG
T ss_pred HHHHHHHHCCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccch--HHHHHHHHHHH-hcCCceEEEEeCc
Confidence 01367899999999765422 221 122347899999999754 12222222222 2355 45789999
Q ss_pred ccc
Q 047363 137 DRL 139 (876)
Q Consensus 137 D~~ 139 (876)
|..
T Consensus 248 D~~ 250 (425)
T 2ffh_A 248 DGD 250 (425)
T ss_dssp GGC
T ss_pred CCc
Confidence 975
No 229
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=97.13 E-value=0.00018 Score=79.80 Aligned_cols=69 Identities=17% Similarity=0.094 Sum_probs=50.5
Q ss_pred cCeEEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCC-------ccccc----hHHHHHHhh----hhcCCcEEEEecc
Q 047363 72 KDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVE-------GVHIQ----THAVLRQSW----IEKLTPCLVLNKI 136 (876)
Q Consensus 72 ~~~~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~e-------gv~~~----t~~~l~~~~----~~~ip~ilviNKi 136 (876)
+...+.||||+|+..|...+...++.++++|+|+|.++ ..... ....++... ..++|+|||+||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 35789999999999999999999999999999999872 11111 122333332 2468999999999
Q ss_pred cccc
Q 047363 137 DRLI 140 (876)
Q Consensus 137 D~~~ 140 (876)
|+..
T Consensus 261 DL~~ 264 (354)
T 2xtz_A 261 DIFE 264 (354)
T ss_dssp HHHH
T ss_pred chhh
Confidence 9864
No 230
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.06 E-value=0.00039 Score=74.70 Aligned_cols=59 Identities=22% Similarity=0.284 Sum_probs=35.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCcc
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMD 86 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~d 86 (876)
+..+|+++|.+|+|||||+|+|++. ....... ..|.|.....+.+ +..+.++||||..+
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~--~~~~~~~---------------~~g~T~~~~~~~~---~~~~~l~DtpG~~~ 177 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKK--NIAKTGD---------------RPGITTSQQWVKV---GKELELLDTPGILW 177 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTS--CCC---------------------------CCEEE---TTTEEEEECCCCCC
T ss_pred CCceEEEEecCCCchHHHHHHHhcC--ceeecCC---------------CCCeeeeeEEEEe---CCCEEEEECcCcCC
Confidence 3467999999999999999999865 2111110 1233433322222 45799999999754
No 231
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.03 E-value=0.0009 Score=72.69 Aligned_cols=123 Identities=18% Similarity=0.175 Sum_probs=65.0
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeecc--Chh---hhh------hcceeeeeeE-------E--
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMD--YLD---EEQ------RRAITMKSSS-------I-- 67 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d--~~~---~E~------~rgiti~~~~-------i-- 67 (876)
..+.|+|+|+.|+||||++..|.... .. ..+++.+.+ ... .++ ..|+.+-... +
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l-----~~-~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~ 176 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMF-----VD-EGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAF 176 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH-----HH-TTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHH-----Hh-cCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHH
Confidence 34689999999999999999997651 10 112332221 110 011 1233321100 0
Q ss_pred ----EEEEcCeEEEEEcCCCCccchHHHH----H---HH-----HhcCeEEEEEcCCCccccchHHHHHHhhhhcCC-cE
Q 047363 68 ----ALHYKDYAINLIDSPGHMDFCSEVS----T---AA-----RLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLT-PC 130 (876)
Q Consensus 68 ----~~~~~~~~inlIDTPGh~dF~~e~~----~---al-----~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip-~i 130 (876)
.....++.+.|+||||......... . .+ ...|.+++|+|+..+. ......+...+ ..+ .-
T Consensus 177 ~al~~a~~~~~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~~--~~l~~a~~~~~-~~~i~g 253 (306)
T 1vma_A 177 DAVAHALARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQ--NGLVQAKIFKE-AVNVTG 253 (306)
T ss_dssp HHHHHHHHTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHH--HHHHHHHHHHH-HSCCCE
T ss_pred HHHHHHHhcCCCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH--HHHHHHHHHHh-cCCCCE
Confidence 0011357899999999754433222 1 11 1268899999997431 11111222222 244 34
Q ss_pred EEEeccccc
Q 047363 131 LVLNKIDRL 139 (876)
Q Consensus 131 lviNKiD~~ 139 (876)
+|+||+|..
T Consensus 254 vVlTk~D~~ 262 (306)
T 1vma_A 254 IILTKLDGT 262 (306)
T ss_dssp EEEECGGGC
T ss_pred EEEeCCCCc
Confidence 788999975
No 232
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.97 E-value=0.0016 Score=70.67 Aligned_cols=124 Identities=19% Similarity=0.186 Sum_probs=66.3
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChh-----hh------hhcceeeeeeEEEE-------
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLD-----EE------QRRAITMKSSSIAL------- 69 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~-----~E------~~rgiti~~~~i~~------- 69 (876)
+-..|+|+|+.|+|||||+..|.+.. .+ ..|++.+.+... .+ ..+++.+-......
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll-----~~-~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~ 174 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY-----QN-LGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAY 174 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH-----HT-TTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH-----Hh-cCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHH
Confidence 35689999999999999999997651 11 123333221110 01 11233221100000
Q ss_pred ------EEcCeEEEEEcCCCCccchH----HHH---HHHH-----hcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEE
Q 047363 70 ------HYKDYAINLIDSPGHMDFCS----EVS---TAAR-----LSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCL 131 (876)
Q Consensus 70 ------~~~~~~inlIDTPGh~dF~~----e~~---~al~-----~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~il 131 (876)
...++.+.++||+|..+... +.. .++. ..+.+++++|+..+.. ....++...+..-..++
T Consensus 175 ~~v~~~~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~--~~~~~~~~~~~~~~t~i 252 (304)
T 1rj9_A 175 DAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQN--GLEQAKKFHEAVGLTGV 252 (304)
T ss_dssp HHHHHHHHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTH--HHHHHHHHHHHHCCSEE
T ss_pred HHHHHHHhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHH--HHHHHHHHHHHcCCcEE
Confidence 01245678999999764322 211 1111 1466888999876642 22333333333234788
Q ss_pred EEeccccc
Q 047363 132 VLNKIDRL 139 (876)
Q Consensus 132 viNKiD~~ 139 (876)
++||.|..
T Consensus 253 ivTh~d~~ 260 (304)
T 1rj9_A 253 IVTKLDGT 260 (304)
T ss_dssp EEECTTSS
T ss_pred EEECCccc
Confidence 99999875
No 233
>3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A; translation termination, peptide release, PTC, P biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo sapiens}
Probab=96.92 E-value=0.0013 Score=67.08 Aligned_cols=67 Identities=16% Similarity=0.322 Sum_probs=53.0
Q ss_pred eEEEEEEEeCccCCCCEEEEeccccCCcchhhhccccceeEEeEEEEecCCceeecceeeCCCeEEE--ecCCc-eeecc
Q 047363 439 FLAFARIFSGVLYSGQRVFVLSALYDPLKVESMQKHIQEAELQSLYLMMGQGLKPVASAKAGNVVAI--RGLGQ-QILKS 515 (876)
Q Consensus 439 ~iaf~RV~SGtL~~G~~v~vlg~~y~~~~~~~~~~~~~~~~I~~L~l~~G~~~~~v~~v~AGnIv~I--~GL~~-~i~k~ 515 (876)
.+..+||.||++++||+|.++... .+.+|.+|.... +++++|.||+.|++ .|++. .+..|
T Consensus 20 ~v~~G~v~~G~i~~Gd~v~i~P~~-------------~~~~V~~I~~~~----~~~~~A~aGd~V~l~L~gi~~~di~rG 82 (204)
T 3e1y_E 20 TVVLGKLESGSICKGQQLVMMPNK-------------HNVEVLGILSDD----VETDTVAPGENLKIRLKGIEEEEILPG 82 (204)
T ss_dssp EEEEEECCBSCEESSCCEEETTTT-------------EEEEEEEECSSS----SCBSEECTTSEEEEEEEESSSSCCCTT
T ss_pred EEEEEEEecCEEECCCEEEECCCC-------------CEEEEEEEEECC----EEeEEECCCCEEEEEEcCCCHHHCccc
Confidence 488999999999999999886311 346888887653 57999999999999 77752 37789
Q ss_pred ceecCCC
Q 047363 516 ATLSSTR 522 (876)
Q Consensus 516 ~Tl~s~~ 522 (876)
++|++..
T Consensus 83 ~vl~~~~ 89 (204)
T 3e1y_E 83 FILCDPN 89 (204)
T ss_dssp CEEBCSS
T ss_pred eEEECCC
Confidence 9998754
No 234
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.80 E-value=0.0018 Score=69.99 Aligned_cols=121 Identities=20% Similarity=0.231 Sum_probs=65.9
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChh-----hh------hhcceeeeee-----EEEE--
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLD-----EE------QRRAITMKSS-----SIAL-- 69 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~-----~E------~~rgiti~~~-----~i~~-- 69 (876)
.-+.|+++|+.|+||||++..|.... .. ..+++.+.|... .+ ...|+.+-.. +..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~-----~~-~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~ 170 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY-----KG-KGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRR 170 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHH-----HH-TTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-----HH-cCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHH
Confidence 34689999999999999999997651 10 112332222110 00 1113322110 0000
Q ss_pred ------EEcCeEEEEEcCCCCccchH----HHHHHH--HhcCeEEEEEcCCCccccchHHHHHHhhh--hcCC-cEEEEe
Q 047363 70 ------HYKDYAINLIDSPGHMDFCS----EVSTAA--RLSDGALVLVDAVEGVHIQTHAVLRQSWI--EKLT-PCLVLN 134 (876)
Q Consensus 70 ------~~~~~~inlIDTPGh~dF~~----e~~~al--~~aDgaIlVvDa~egv~~~t~~~l~~~~~--~~ip-~ilviN 134 (876)
...++.+.||||||...... ++.... ...|.+++|+|+..+ ...++++.. ..++ .-+|+|
T Consensus 171 ~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~-----~~~~~~~~~~~~~~~i~givln 245 (295)
T 1ls1_A 171 RVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG-----QEALSVARAFDEKVGVTGLVLT 245 (295)
T ss_dssp HHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT-----HHHHHHHHHHHHHTCCCEEEEE
T ss_pred HHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCc-----HHHHHHHHHHhhcCCCCEEEEE
Confidence 01368999999998654422 222222 247899999998743 222233322 2355 447899
Q ss_pred ccccc
Q 047363 135 KIDRL 139 (876)
Q Consensus 135 KiD~~ 139 (876)
|+|..
T Consensus 246 k~d~~ 250 (295)
T 1ls1_A 246 KLDGD 250 (295)
T ss_dssp CGGGC
T ss_pred CCCCC
Confidence 99975
No 235
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=96.80 E-value=0.0013 Score=70.93 Aligned_cols=65 Identities=14% Similarity=0.102 Sum_probs=44.9
Q ss_pred CeEEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhh----hcCCcE-EEEecccc
Q 047363 73 DYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWI----EKLTPC-LVLNKIDR 138 (876)
Q Consensus 73 ~~~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~----~~ip~i-lviNKiD~ 138 (876)
.|.+.|||||+..... .+..++..||.+|+|+++.......+..+++.+.+ .+++++ +|+|+.+.
T Consensus 156 ~yD~ViiD~p~~~~~~-~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~ 225 (307)
T 3end_A 156 DTDVVIFDVLGDVVCG-GFAAPLQHADQAVVVTANDFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRA 225 (307)
T ss_dssp SCSEEEEEECCSSCCG-GGGGGGGTCSEEEEEECSSHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSC
T ss_pred cCCEEEEeCCCccchH-HHHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCc
Confidence 5899999999866532 33457789999999998764433444445555543 345555 89999984
No 236
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.79 E-value=0.0023 Score=69.05 Aligned_cols=120 Identities=16% Similarity=0.142 Sum_probs=65.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHhhC--CCCcccccCCceeeccChh-----hhh------hcceeeeee--------E
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAATG--GGLLHPKLAGKLRFMDYLD-----EEQ------RRAITMKSS--------S 66 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~t~--~g~i~~~~~g~~~~~d~~~-----~E~------~rgiti~~~--------~ 66 (876)
+-+.|+++|+.|+||||++..|..... .|. ++.+.+... .|+ ..|+.+... .
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~-------~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~a 176 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHK-------KIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQA 176 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCC-------CEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC-------EEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHH
Confidence 457899999999999999999976511 221 222211110 011 112211100 0
Q ss_pred EEEEEcCeEEEEEcCCCCccchHHH----HHHHH--hcCeEEEEEcCCCccccchHHHHHHhhhhc-CC-cEEEEecccc
Q 047363 67 IALHYKDYAINLIDSPGHMDFCSEV----STAAR--LSDGALVLVDAVEGVHIQTHAVLRQSWIEK-LT-PCLVLNKIDR 138 (876)
Q Consensus 67 i~~~~~~~~inlIDTPGh~dF~~e~----~~al~--~aDgaIlVvDa~egv~~~t~~~l~~~~~~~-ip-~ilviNKiD~ 138 (876)
+. ...++.+.|+||||........ ...+. ..|.+++|+|+..+.. .+.+.+.... ++ .-+++||+|.
T Consensus 177 l~-~~~~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~----~~~~~~~~~~~l~~~giVltk~D~ 251 (296)
T 2px0_A 177 KE-LFSEYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYE----DMKHIVKRFSSVPVNQYIFTKIDE 251 (296)
T ss_dssp HH-HGGGSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHH----HHHHHTTTTSSSCCCEEEEECTTT
T ss_pred HH-HhcCCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHH----HHHHHHHHHhcCCCCEEEEeCCCc
Confidence 00 1246889999999977654332 22222 2568899999875531 2222222221 22 3467899997
Q ss_pred c
Q 047363 139 L 139 (876)
Q Consensus 139 ~ 139 (876)
.
T Consensus 252 ~ 252 (296)
T 2px0_A 252 T 252 (296)
T ss_dssp C
T ss_pred c
Confidence 6
No 237
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=96.79 E-value=0.0041 Score=65.12 Aligned_cols=65 Identities=17% Similarity=0.139 Sum_probs=49.9
Q ss_pred CeEEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcE-EEEeccccc
Q 047363 73 DYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPC-LVLNKIDRL 139 (876)
Q Consensus 73 ~~~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~i-lviNKiD~~ 139 (876)
.|.+.|||||+... ..+..++..+|.+|+|+.+.......+...++.+.+.+.+.+ +|+|+.|..
T Consensus 110 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~ 175 (263)
T 1hyq_A 110 STDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPEISSITDGLKTKIVAERLGTKVLGVVVNRITTL 175 (263)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSSHHHHHHHHHHHHHHHHHTCEEEEEEEEEECTT
T ss_pred hCCEEEEeCCCCCC--hHHHHHHHHCCEEEEEeCCChhHHHHHHHHHHHHHhcCCCeeEEEEccCCcc
Confidence 58899999998765 677888999999999998865444455566666666666554 789999864
No 238
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=96.79 E-value=0.00054 Score=72.72 Aligned_cols=58 Identities=19% Similarity=0.299 Sum_probs=35.9
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccc
Q 047363 10 RNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDF 87 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF 87 (876)
.+|+++|.+|+|||||+++|.+. ..... + ...|.|.....+. -+..+.++||||..+.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~--~~~~~----~-----------~~~g~T~~~~~~~---~~~~~~l~DtpG~~~~ 157 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGK--RASSV----G-----------AQPGITKGIQWFS---LENGVKILDTPGILYK 157 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT--CC-------------------------CCSCEEE---CTTSCEEESSCEECCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcc--ccccc----C-----------CCCCCccceEEEE---eCCCEEEEECCCcccC
Confidence 58999999999999999999865 21100 0 0124443332221 1457899999997764
No 239
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=96.71 E-value=0.0054 Score=63.22 Aligned_cols=65 Identities=12% Similarity=0.016 Sum_probs=49.0
Q ss_pred CeEEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcC---CcEEEEeccccc
Q 047363 73 DYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKL---TPCLVLNKIDRL 139 (876)
Q Consensus 73 ~~~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~i---p~ilviNKiD~~ 139 (876)
.|.+.|||||+... .....++..+|.+|+|+.........+..+++.+.+.+. ..-+|+|+.|..
T Consensus 118 ~yD~viiD~p~~~~--~~~~~~l~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~ 185 (245)
T 3ea0_A 118 FYDYIIVDFGASID--HVGVWVLEHLDELCIVTTPSLQSLRRAGQLLKLCKEFEKPISRIEIILNRADTN 185 (245)
T ss_dssp HCSEEEEEEESSCC--TTHHHHGGGCSEEEEEECSSHHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSC
T ss_pred hCCEEEEeCCCCCc--hHHHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhCCCccceEEEEecCCCC
Confidence 48899999999764 466778999999999999875444555666666666553 356889999865
No 240
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=96.69 E-value=0.0086 Score=61.45 Aligned_cols=66 Identities=21% Similarity=0.182 Sum_probs=49.9
Q ss_pred CeEEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcE-EEEecccccc
Q 047363 73 DYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPC-LVLNKIDRLI 140 (876)
Q Consensus 73 ~~~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~i-lviNKiD~~~ 140 (876)
.|.+.|||||+... ..+..++..+|.+|+|+++.......+...++.+.+.+.+.+ +|+||.|...
T Consensus 111 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~~ 177 (237)
T 1g3q_A 111 KFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLKKAGLAILGFVLNRYGRSD 177 (237)
T ss_dssp GCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHHHHHTTCEEEEEEEEEETSCT
T ss_pred cCCEEEEECCCCcC--HHHHHHHHHCCeEEEEecCCcccHHHHHHHHHHHHhCCCceEEEEEecCCccc
Confidence 47899999999755 667888999999999999865444455566666666666544 7899998653
No 241
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=96.68 E-value=0.0019 Score=66.64 Aligned_cols=65 Identities=9% Similarity=0.058 Sum_probs=48.9
Q ss_pred cCeEEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCc-EEEEecccc
Q 047363 72 KDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTP-CLVLNKIDR 138 (876)
Q Consensus 72 ~~~~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~-ilviNKiD~ 138 (876)
..|.+.|||||+.... .+..++..+|.+|+|+++..........+.+.+...+++. .+|+||.+.
T Consensus 130 ~~yD~viiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~~v~N~~~~ 195 (254)
T 3kjh_A 130 DKKEAVVMDMGAGIEH--LTRGTAKAVDMMIAVIEPNLNSIKTGLNIEKLAGDLGIKKVRYVINKVRN 195 (254)
T ss_dssp TCCSEEEEEECTTCTT--CCHHHHTTCSEEEEEECSSHHHHHHHHHHHHHHHHHTCSCEEEEEEEECC
T ss_pred CCCCEEEEeCCCcccH--HHHHHHHHCCEEEEecCCCHHHHHHHHHHHHHHHHcCCccEEEEEeCCCC
Confidence 3689999999997654 5677889999999999986544444455666666677654 578999983
No 242
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=96.67 E-value=0.0019 Score=67.95 Aligned_cols=65 Identities=15% Similarity=0.079 Sum_probs=47.7
Q ss_pred CeEEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhh--cCCcEEEEeccccc
Q 047363 73 DYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIE--KLTPCLVLNKIDRL 139 (876)
Q Consensus 73 ~~~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~--~ip~ilviNKiD~~ 139 (876)
.|.+.|||||+... .....++..||.+|+|+.+..........+++.+.+. ++++.+|+|+.++.
T Consensus 144 ~yD~viiD~pp~~~--~~~~~~l~~aD~vivv~~~~~~s~~~~~~~~~~l~~~~~~~~~~vv~N~~~~~ 210 (267)
T 3k9g_A 144 KYDYIVIDTNPSLD--VTLKNALLCSDYVIIPMTAEKWAVESLDLFNFFVRKLNLFLPIFLIITRFKKN 210 (267)
T ss_dssp TCSEEEEEECSSCS--HHHHHHHTTCSEEEEEEESCTTHHHHHHHHHHHHHTTTCCCCEEEEEEEECTT
T ss_pred CCCEEEEECcCCcc--HHHHHHHHHCCeEEEEeCCChHHHHHHHHHHHHHHHHhccCCEEEEEecccCc
Confidence 58899999999764 4677888899999999998644333344555555554 45778999999543
No 243
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=96.64 E-value=0.0035 Score=67.11 Aligned_cols=65 Identities=18% Similarity=0.107 Sum_probs=46.4
Q ss_pred CeEEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhh------hcCCcE-EEEeccccc
Q 047363 73 DYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWI------EKLTPC-LVLNKIDRL 139 (876)
Q Consensus 73 ~~~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~------~~ip~i-lviNKiD~~ 139 (876)
.|.+.|||||+.... ....++..+|.+|+|+.+..........+++.+.. .+++++ +|+|+.|..
T Consensus 154 ~yD~IiiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~ 225 (298)
T 2oze_A 154 DYDLIIIDTVPTPSV--YTNNAIVASDYVMIPLQAEEESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTD 225 (298)
T ss_dssp GCSEEEEEECSSCSH--HHHHHHHHCSEEEEEECGGGCCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTT
T ss_pred CCCEEEEECCCCccH--HHHHHHHHCCeEEEEecCcHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCC
Confidence 488999999997654 45667788999999999875544444445444433 256644 789999874
No 244
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=96.63 E-value=0.0043 Score=64.59 Aligned_cols=65 Identities=15% Similarity=0.223 Sum_probs=48.3
Q ss_pred CeEEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhc---------CCcEEEEeccccc
Q 047363 73 DYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEK---------LTPCLVLNKIDRL 139 (876)
Q Consensus 73 ~~~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~---------ip~ilviNKiD~~ 139 (876)
.|.+.|||||+... ..+..++..+|.+|+|+++.......+..+++.+...+ .+.-+|+|+.|..
T Consensus 113 ~yD~viiD~p~~~~--~~~~~~l~~ad~vi~v~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~~ 186 (260)
T 3q9l_A 113 DFEFIVCDSPAGIE--TGALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNPG 186 (260)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHTCSEEEEEECSSHHHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECHH
T ss_pred CCCEEEEcCCCCCC--HHHHHHHHhCCEEEEEecCChhHHHHHHHHHHHHHHhccccccccCCcceEEEEecCCcc
Confidence 58999999999654 57888999999999999987544444555555554433 3556899999864
No 245
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.56 E-value=0.00079 Score=72.84 Aligned_cols=64 Identities=13% Similarity=-0.003 Sum_probs=50.8
Q ss_pred EEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCcc-ccch-HHHHHHhhhhcCCcEEEEecccccc
Q 047363 75 AINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGV-HIQT-HAVLRQSWIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 75 ~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv-~~~t-~~~l~~~~~~~ip~ilviNKiD~~~ 140 (876)
.+.+||| +..|......+++.+|++|+|+|+.+.. .... ...+..+...++|++||+||+|+..
T Consensus 64 ~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~~~~piilv~NK~DL~~ 129 (301)
T 1u0l_A 64 SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLYD 129 (301)
T ss_dssp SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGGCC
T ss_pred eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeHHHcCC
Confidence 7899999 8899888888999999999999998754 2222 3334445557899999999999864
No 246
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=96.33 E-value=0.0035 Score=67.19 Aligned_cols=61 Identities=26% Similarity=0.234 Sum_probs=44.7
Q ss_pred EEcCCCCc-cchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccc
Q 047363 78 LIDSPGHM-DFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 78 lIDTPGh~-dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~ 140 (876)
+=+.|||. ....++...+..+|++|.|+|+.++.......+-+.+ .++|.++|+||+|+..
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~~ 64 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--KNKPRIMLLNKADKAD 64 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--SSSCEEEEEECGGGSC
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--CCCCEEEEEECcccCC
Confidence 34579998 4677899999999999999999988776544443333 5789999999999974
No 247
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.92 E-value=0.022 Score=61.55 Aligned_cols=122 Identities=20% Similarity=0.225 Sum_probs=65.5
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeec--cChh---hhh------hcceeeeeeEEE-EE------
Q 047363 9 IRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFM--DYLD---EEQ------RRAITMKSSSIA-LH------ 70 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~--d~~~---~E~------~rgiti~~~~i~-~~------ 70 (876)
-..++++|+.|+|||||+..|.+.. .+ ..|++.+. |... .++ .+++.+-..... +.
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l-----~~-~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~ 173 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRL-----KN-EGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLS 173 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH-----HH-TTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH-----HH-cCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHH
Confidence 3578999999999999999998751 11 12333332 1111 011 123433221111 10
Q ss_pred -------EcCeEEEEEcCCCCccchHH----H---HHHHH-----hcCeEEEEEcCCCccccchHHHHHHhh-hhcCCcE
Q 047363 71 -------YKDYAINLIDSPGHMDFCSE----V---STAAR-----LSDGALVLVDAVEGVHIQTHAVLRQSW-IEKLTPC 130 (876)
Q Consensus 71 -------~~~~~inlIDTPGh~dF~~e----~---~~al~-----~aDgaIlVvDa~egv~~~t~~~l~~~~-~~~ip~i 130 (876)
..++...++||.|...+... . ..++. ..+-+++|+|+..|..... ..+... ..+ ..+
T Consensus 174 e~l~~~~~~~~d~~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDptsglD~~~--~~~~~~~~~g-~t~ 250 (302)
T 3b9q_A 174 KAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLP--QAREFNEVVG-ITG 250 (302)
T ss_dssp HHHHHHHHTTCSEEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEEGGGGGGGHH--HHHHHHHHTC-CCE
T ss_pred HHHHHHHHcCCcchHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCCcCHHH--HHHHHHHhcC-CCE
Confidence 01345679999997665322 1 11211 1345699999877764432 223333 233 357
Q ss_pred EEEeccccc
Q 047363 131 LVLNKIDRL 139 (876)
Q Consensus 131 lviNKiD~~ 139 (876)
++++|+|-.
T Consensus 251 iiiThlD~~ 259 (302)
T 3b9q_A 251 LILTKLDGS 259 (302)
T ss_dssp EEEECCSSC
T ss_pred EEEeCCCCC
Confidence 889999864
No 248
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=95.67 E-value=0.0029 Score=67.64 Aligned_cols=34 Identities=21% Similarity=0.234 Sum_probs=29.7
Q ss_pred CeEEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCC
Q 047363 73 DYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAV 108 (876)
Q Consensus 73 ~~~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~ 108 (876)
.|.+.|||||+.. ...+..++..+|.+|+|+.+.
T Consensus 103 ~yD~viiD~p~~~--~~~~~~~l~~aD~viiv~~~~ 136 (286)
T 2xj4_A 103 ECDFILIDTPGGD--SAITRMAHGRADLVVTPMNDS 136 (286)
T ss_dssp HCSEEEEECCSSC--CHHHHHHHHTCSEEEEEEESS
T ss_pred cCCEEEEcCCCCc--cHHHHHHHHHCCEEEEEEcCC
Confidence 4789999999975 567889999999999999875
No 249
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=95.60 E-value=0.017 Score=64.25 Aligned_cols=63 Identities=19% Similarity=0.052 Sum_probs=42.3
Q ss_pred EEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEeccccccc
Q 047363 76 INLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLIS 141 (876)
Q Consensus 76 inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~~ 141 (876)
+.-+++| +.+|........+.++++|+|+|+.+........+.+.+ .+.|+++|+||+|++..
T Consensus 51 ~~~v~~~-~e~f~~~L~~~~~~~~lil~VvD~~d~~~s~~~~l~~~l--~~~piilV~NK~DLl~~ 113 (369)
T 3ec1_A 51 VQDVPLD-DDDFLSMLHRIGESKALVVNIVDIFDFNGSFIPGLPRFA--ADNPILLVGNKADLLPR 113 (369)
T ss_dssp ---------CHHHHHHHHHHHHCCEEEEEEETTCSGGGCCSSHHHHC--TTSCEEEEEECGGGSCT
T ss_pred ccCCcCC-HHHHHHHHHHhhccCcEEEEEEECCCCCCchhhHHHHHh--CCCCEEEEEEChhcCCC
Confidence 4445554 778888888888999999999999976544333333333 27899999999999754
No 250
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=95.46 E-value=0.038 Score=62.87 Aligned_cols=27 Identities=19% Similarity=0.394 Sum_probs=24.0
Q ss_pred CCCceEEEEEeCCCCcHHHHHHHHHHh
Q 047363 6 TRKIRNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 6 ~~~irnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
..++-.|+|+|..++|||||+|+|++.
T Consensus 64 ~~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp TSBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCcHHHHHHHHhhh
Confidence 346788999999999999999999975
No 251
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=95.35 E-value=0.026 Score=61.31 Aligned_cols=25 Identities=28% Similarity=0.394 Sum_probs=23.3
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHh
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
++..++|+|..|+|||||++.|++.
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 5889999999999999999999976
No 252
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.27 E-value=0.034 Score=61.59 Aligned_cols=123 Identities=20% Similarity=0.194 Sum_probs=64.7
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeec--cChh---hhh------hcceeeeeeEEE-EE------
Q 047363 9 IRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFM--DYLD---EEQ------RRAITMKSSSIA-LH------ 70 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~--d~~~---~E~------~rgiti~~~~i~-~~------ 70 (876)
-..|+++|+.|+|||||+..|.+.. .+ ..|++.+. |... .++ .+++.+-..... +.
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l-----~~-~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~ 230 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRL-----KN-EGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLS 230 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH-----HH-TTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhc-----cc-cCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhHH
Confidence 3579999999999999999998751 11 12333322 1111 011 123332111000 00
Q ss_pred -------EcCeEEEEEcCCCCccchHHH-------HHHHH-----hcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEE
Q 047363 71 -------YKDYAINLIDSPGHMDFCSEV-------STAAR-----LSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCL 131 (876)
Q Consensus 71 -------~~~~~inlIDTPGh~dF~~e~-------~~al~-----~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~il 131 (876)
..++...++||.|...+.... ..++. ..+-+++|+|+..|..... ..+...+..-..++
T Consensus 231 e~l~~~~~~~~d~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDpttglD~~~--~~~~~~~~~g~t~i 308 (359)
T 2og2_A 231 KAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLP--QAREFNEVVGITGL 308 (359)
T ss_dssp HHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEEGGGGGGGHH--HHHHHHHHTCCCEE
T ss_pred HHHHHHHhCCCHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCCCCHHH--HHHHHHHhcCCeEE
Confidence 013456899999976653221 11111 1345699999876654332 22333222124578
Q ss_pred EEeccccc
Q 047363 132 VLNKIDRL 139 (876)
Q Consensus 132 viNKiD~~ 139 (876)
+++|+|-.
T Consensus 309 iiThlD~~ 316 (359)
T 2og2_A 309 ILTKLDGS 316 (359)
T ss_dssp EEESCTTC
T ss_pred EEecCccc
Confidence 89999864
No 253
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=95.15 E-value=0.0065 Score=64.34 Aligned_cols=56 Identities=21% Similarity=0.272 Sum_probs=40.0
Q ss_pred CCCCccch-HHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEecccccc
Q 047363 81 SPGHMDFC-SEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 81 TPGh~dF~-~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~ 140 (876)
-|||.... .++...+..+|.+|.|+|+.++.......+ . .. ++|+++|+||+|+..
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l-~-ll--~k~~iivlNK~DL~~ 60 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGV-D-FS--RKETIILLNKVDIAD 60 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTS-C-CT--TSEEEEEEECGGGSC
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHH-H-hc--CCCcEEEEECccCCC
Confidence 39998764 588999999999999999998766543221 1 12 899999999999975
No 254
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=94.79 E-value=0.05 Score=56.88 Aligned_cols=66 Identities=6% Similarity=-0.023 Sum_probs=40.6
Q ss_pred CeEEEEEcCCCCccchHH-HHHHHHhcCeEEEEEcCCCccccchHHHHHHhhh----hcCCc-EEEEecccc
Q 047363 73 DYAINLIDSPGHMDFCSE-VSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWI----EKLTP-CLVLNKIDR 138 (876)
Q Consensus 73 ~~~inlIDTPGh~dF~~e-~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~----~~ip~-ilviNKiD~ 138 (876)
.|.+.||||||......- .......+|.+|+|+.+.......+..+++.+.. .+++. -+|+|+.+.
T Consensus 115 ~yD~iiiD~~~~~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~ 186 (269)
T 1cp2_A 115 DLDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGEMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKV 186 (269)
T ss_dssp TCSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECSSHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSS
T ss_pred CCCEEEEeCCchhhhhhhhhhhhHhhCCEEEEeecCchhhHHHHHHHHHHHHHHHhcCCCcEEEEEeecCCc
Confidence 588999999996532111 1122357999999998864333333344444433 25565 478999864
No 255
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=94.78 E-value=0.031 Score=57.17 Aligned_cols=77 Identities=5% Similarity=-0.022 Sum_probs=43.0
Q ss_pred EEEEEcCC------CCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHH----HHhhh----hcCCcEEEEecc-ccc
Q 047363 75 AINLIDSP------GHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVL----RQSWI----EKLTPCLVLNKI-DRL 139 (876)
Q Consensus 75 ~inlIDTP------Gh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l----~~~~~----~~ip~ilviNKi-D~~ 139 (876)
++..-.+| |+..+...+..++..+|++|+|||+.+........-+ +.+.. .++|++++.||. |.+
T Consensus 97 k~~~~~~~~~~~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp 176 (227)
T 3l82_B 97 KMFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV 176 (227)
T ss_dssp --------------------CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTS
T ss_pred hcccccCCCccccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCcc
Confidence 45555666 6777788899999999999999999876433333333 22211 478999999995 676
Q ss_pred ccccccChHHHHHHH
Q 047363 140 ISELKLTPLEAYNRL 154 (876)
Q Consensus 140 ~~e~~~~~~~~~~~l 154 (876)
.+ +++.++.+.|
T Consensus 177 ~A---ms~~EI~e~L 188 (227)
T 3l82_B 177 KR---MPCFYLAHEL 188 (227)
T ss_dssp CB---CCHHHHHHHT
T ss_pred CC---CCHHHHHHHc
Confidence 43 4565555443
No 256
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=94.70 E-value=0.037 Score=61.51 Aligned_cols=57 Identities=18% Similarity=0.038 Sum_probs=39.9
Q ss_pred CCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEeccccccc
Q 047363 83 GHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLIS 141 (876)
Q Consensus 83 Gh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~~ 141 (876)
...+|........+.+|++|+|+|+.+........+.+.+ .++|+++|+||+|+...
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~~~~~~~l~~~~--~~~p~ilV~NK~DL~~~ 111 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFNGSWLPGLHRFV--GNNKVLLVGNKADLIPK 111 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHHHHCCTTHHHHS--SSSCEEEEEECGGGSCT
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCcccHHHHHHHHh--CCCcEEEEEEChhcCCc
Confidence 3467888888888888999999999874322212222221 37899999999999753
No 257
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=94.48 E-value=0.012 Score=63.61 Aligned_cols=57 Identities=18% Similarity=0.059 Sum_probs=41.7
Q ss_pred CccchHHHHHHHHhcCeEEEEEcCCCcc-ccch-HHHHHHhhhhcCCcEEEEecccccc
Q 047363 84 HMDFCSEVSTAARLSDGALVLVDAVEGV-HIQT-HAVLRQSWIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 84 h~dF~~e~~~al~~aDgaIlVvDa~egv-~~~t-~~~l~~~~~~~ip~ilviNKiD~~~ 140 (876)
+..|..-...+++.+|++|+|+|+.+.. .... ...+..+...++|+++|+||+|+..
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~~ 124 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLN 124 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGCC
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCCC
Confidence 4455444445799999999999998754 3332 3445556678899999999999974
No 258
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=94.46 E-value=0.054 Score=57.56 Aligned_cols=66 Identities=8% Similarity=0.025 Sum_probs=40.1
Q ss_pred CeEEEEEcCCCCccchHH-HHHHHHhcCeEEEEEcCCCccccchHHHHHHhhh----hcCCc-EEEEecccc
Q 047363 73 DYAINLIDSPGHMDFCSE-VSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWI----EKLTP-CLVLNKIDR 138 (876)
Q Consensus 73 ~~~inlIDTPGh~dF~~e-~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~----~~ip~-ilviNKiD~ 138 (876)
.|.+.||||||......- .......+|.+|+|+.+.......+..+++.+.. .++++ -+|+|+.+.
T Consensus 118 ~yD~ViID~~~~~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~ 189 (289)
T 2afh_E 118 DLDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSGEMMAMYAANNISKGIVKYANSGSVRLGGLICNSRNT 189 (289)
T ss_dssp TCSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCC
T ss_pred CCCEEEEeCCCccccchhhhhhhhhhCCEEEEEecCCHHHHHHHHHHHHHHHHHHhcCCCceEEEEEecCCc
Confidence 689999999996532111 1223367999999998764333333334444332 25564 478899863
No 259
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=93.16 E-value=0.056 Score=61.95 Aligned_cols=104 Identities=10% Similarity=0.030 Sum_probs=55.5
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceee-ccChhhhhhcceeeeeeEEEEEEcCeEEEEEcCCCCccc
Q 047363 9 IRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRF-MDYLDEEQRRAITMKSSSIALHYKDYAINLIDSPGHMDF 87 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~-~d~~~~E~~rgiti~~~~i~~~~~~~~inlIDTPGh~dF 87 (876)
-.+|.++|.+|+||||+..+|....+...+. ...+ .|....+ ..|. .....++|+.|...|
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~~~-----t~~~~~d~~r~~-~~g~------------~~~~~ifd~~g~~~~ 100 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFIGVP-----TREFNVGQYRRD-MVKT------------YKSFEFFLPDNEEGL 100 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCC-----EEEEEHHHHHHH-HHCS------------CCCGGGGCTTCHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhccCCC-----ceEEecchhhhh-hccC------------CCcccccCCCCHHHH
Confidence 3579999999999999999998762110000 0000 0111111 1111 012246788886322
Q ss_pred --hHH--------HHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcE
Q 047363 88 --CSE--------VSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPC 130 (876)
Q Consensus 88 --~~e--------~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~i 130 (876)
... ...++..++|.++|+|+.......-..++..+.+.+.+++
T Consensus 101 r~re~~~~~~l~~~~~~l~~~~G~~vV~D~tn~~~~~R~~~~~~~~~~~~~vv 153 (469)
T 1bif_A 101 KIRKQCALAALNDVRKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTF 153 (469)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCEEEEeCCCCCHHHHHHHHHHHHhcCCcEE
Confidence 222 1445555788899999986533333334444555555443
No 260
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=92.95 E-value=0.12 Score=55.23 Aligned_cols=70 Identities=6% Similarity=0.036 Sum_probs=47.2
Q ss_pred CCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHH----HHh---h-hhcCCcEEEEec-ccccccccccChHHHHH
Q 047363 82 PGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVL----RQS---W-IEKLTPCLVLNK-IDRLISELKLTPLEAYN 152 (876)
Q Consensus 82 PGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l----~~~---~-~~~ip~ilviNK-iD~~~~e~~~~~~~~~~ 152 (876)
-|+..+...+..++..+||+|+|||+.+........-+ +.+ . ..++|++++.|| .|.+.+ +++.++.+
T Consensus 195 GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~A---ms~~EI~e 271 (312)
T 3l2o_B 195 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR---MPCFYLAH 271 (312)
T ss_dssp --CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCB---CCHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCC---CCHHHHHH
Confidence 36778888999999999999999999876543332222 212 1 257899999997 588653 45555544
Q ss_pred HH
Q 047363 153 RL 154 (876)
Q Consensus 153 ~l 154 (876)
.|
T Consensus 272 ~L 273 (312)
T 3l2o_B 272 EL 273 (312)
T ss_dssp HT
T ss_pred Hc
Confidence 43
No 261
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=92.91 E-value=0.026 Score=61.10 Aligned_cols=23 Identities=13% Similarity=0.270 Sum_probs=20.1
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 047363 10 RNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
..++|+|++|+|||||++.|...
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC-
T ss_pred CEEEEECCCCCCHHHHHHHhccc
Confidence 57899999999999999999643
No 262
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=92.88 E-value=0.11 Score=55.12 Aligned_cols=67 Identities=12% Similarity=0.150 Sum_probs=50.3
Q ss_pred CeEEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcE-EEEecccccc
Q 047363 73 DYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPC-LVLNKIDRLI 140 (876)
Q Consensus 73 ~~~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~i-lviNKiD~~~ 140 (876)
.|.+.|||||+..... +....++.+|++|+|+.+...........++.+.+.+++++ +|+|+.|...
T Consensus 191 ~yD~VIIDtpp~~~~~-d~~~l~~~aD~vilVv~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~~ 258 (271)
T 3bfv_A 191 NYNFVIIDTPPVNTVT-DAQLFSKFTGNVVYVVNSENNNKDEVKKGKELIEATGAKLLGVVLNRMPKDK 258 (271)
T ss_dssp HCSEEEEECCCTTTCS-HHHHHHHHHCEEEEEEETTSCCHHHHHHHHHHHHTTTCEEEEEEEEEECC--
T ss_pred CCCEEEEeCCCCchHH-HHHHHHHHCCEEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEeCCcCCC
Confidence 3789999999976542 44455678999999999876666666667777777788877 7899998753
No 263
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=92.86 E-value=0.11 Score=55.88 Aligned_cols=22 Identities=14% Similarity=0.132 Sum_probs=20.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 047363 10 RNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
..++++|++|+|||||++.|. .
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~ 187 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-G 187 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-S
T ss_pred cEEEEECCCCCCHHHHHHHHH-H
Confidence 468999999999999999998 6
No 264
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=92.80 E-value=0.058 Score=53.49 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=21.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 047363 10 RNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
.+++|+|+.|+|||||++.|.+.
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999887
No 265
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=92.73 E-value=0.052 Score=54.57 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=21.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 047363 10 RNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
+.++|+|++|+|||||++.|.+.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 57899999999999999999875
No 266
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=92.58 E-value=0.072 Score=52.46 Aligned_cols=23 Identities=17% Similarity=0.420 Sum_probs=21.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 047363 10 RNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
+.++|+|++|+|||||++.|...
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 57899999999999999999886
No 267
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=92.42 E-value=0.073 Score=51.21 Aligned_cols=24 Identities=21% Similarity=0.027 Sum_probs=21.4
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHh
Q 047363 9 IRNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
++.|+|.|.+|+||||+++.|...
T Consensus 1 M~~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 1 MTLIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp -CEEEEECSSSSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999876
No 268
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=92.38 E-value=0.15 Score=54.47 Aligned_cols=66 Identities=18% Similarity=0.235 Sum_probs=51.4
Q ss_pred CeEEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcE-EEEeccccc
Q 047363 73 DYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPC-LVLNKIDRL 139 (876)
Q Consensus 73 ~~~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~i-lviNKiD~~ 139 (876)
.|.+.|||||+..... +.....+.+|++|+|+.+...........++.+.+.+.+++ +|+||+|..
T Consensus 201 ~yD~VIIDtpp~~~~~-da~~l~~~aD~vllVv~~~~~~~~~~~~~~~~l~~~g~~~~GvVlN~v~~~ 267 (286)
T 3la6_A 201 NYDLVLIDTPPILAVT-DAAIVGRHVGTTLMVARYAVNTLKEVETSLSRFEQNGIPVKGVILNSIFRR 267 (286)
T ss_dssp HCSEEEEECCCTTTCT-HHHHHTTTCSEEEEEEETTTSBHHHHHHHHHHHHHTTCCCCEEEEEEECCC
T ss_pred CCCEEEEcCCCCcchH-HHHHHHHHCCeEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEcCcccc
Confidence 3789999999976543 45566778999999999876665666677777777788766 789999865
No 269
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=92.34 E-value=0.06 Score=53.32 Aligned_cols=23 Identities=39% Similarity=0.465 Sum_probs=21.0
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 047363 10 RNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
+.++|+|+.|+|||||++.|.+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 45899999999999999999876
No 270
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=92.30 E-value=0.44 Score=49.89 Aligned_cols=65 Identities=20% Similarity=0.195 Sum_probs=44.3
Q ss_pred CeEEEEEcCCCCcc----c--hHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcE-EEEeccc
Q 047363 73 DYAINLIDSPGHMD----F--CSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPC-LVLNKID 137 (876)
Q Consensus 73 ~~~inlIDTPGh~d----F--~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~i-lviNKiD 137 (876)
.+.+.+||+||-.- . .....-+-....-+|+|+|+..|...++...++.+...++++. +|+||+.
T Consensus 126 ~~D~vlIEGagGl~~pl~~~~~~~adla~~l~~pVILV~~~~~g~i~~~~lt~~~l~~~g~~i~GvIlN~v~ 197 (251)
T 3fgn_A 126 PGRLTLVEGAGGLLVELAEPGVTLRDVAVDVAAAALVVVTADLGTLNHTKLTLEALAAQQVSCAGLVIGSWP 197 (251)
T ss_dssp TTCEEEEECSSSTTCEEETTTEEHHHHHHHTTCEEEEEECSSTTHHHHHHHHHHHHHHTTCCEEEEEEEEEC
T ss_pred cCCEEEEECCCCCcCCcCcccchHHHHHHHcCCCEEEEEcCCCccHHHHHHHHHHHHhCCCCEEEEEEECCC
Confidence 47899999998431 1 1122333344567999999987766666666666677788876 6789984
No 271
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=92.06 E-value=0.11 Score=50.42 Aligned_cols=26 Identities=12% Similarity=0.194 Sum_probs=22.9
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHh
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
.....|+|+|++|+||||++..|...
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 34578999999999999999999876
No 272
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=91.88 E-value=0.23 Score=53.34 Aligned_cols=66 Identities=11% Similarity=0.162 Sum_probs=51.5
Q ss_pred CeEEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcE-EEEeccccc
Q 047363 73 DYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPC-LVLNKIDRL 139 (876)
Q Consensus 73 ~~~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~i-lviNKiD~~ 139 (876)
.|.+.|||||+..... +.....+.+|++|+|+.+...........++.+.+.+++++ +|+|++|..
T Consensus 213 ~yD~VIIDtpp~~~~~-d~~~l~~~ad~vilV~~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~ 279 (299)
T 3cio_A 213 HYDLVIVDTPPMLAVS-DAAVVGRSVGTSLLVARFGLNTAKEVSLSMQRLEQAGVNIKGAILNGVIKR 279 (299)
T ss_dssp HCSEEEEECCCTTTCT-HHHHHGGGCSEEEEEEETTTSCTTHHHHHHHHHHHTTCCCCCEEEEECCCC
T ss_pred CCCEEEEcCCCCchhH-HHHHHHHHCCEEEEEEcCCCChHHHHHHHHHHHHhCCCCeEEEEEeCCccC
Confidence 3789999999976643 34445678999999999877666667777777777788766 789999864
No 273
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=91.85 E-value=0.15 Score=56.41 Aligned_cols=35 Identities=17% Similarity=0.127 Sum_probs=28.9
Q ss_pred CeEEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCC
Q 047363 73 DYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVE 109 (876)
Q Consensus 73 ~~~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~e 109 (876)
.|.+.|||||.. ....+..++..||.+|+|+.+..
T Consensus 259 ~yD~VIID~p~~--~~~~~~~~l~~aD~vivv~~~~~ 293 (373)
T 3fkq_A 259 NYDEIIVDLPFS--LEIEKLKLLSKAWRIIVVNDGSQ 293 (373)
T ss_dssp CCSEEEEECCCC--CCHHHHHHHTTCSEEEEEECCCH
T ss_pred CCCEEEEeCCCC--CCHHHHHHHHHCCEEEEEecCCc
Confidence 588999999954 44678888999999999988753
No 274
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=91.85 E-value=0.088 Score=52.39 Aligned_cols=23 Identities=35% Similarity=0.348 Sum_probs=21.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 047363 10 RNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
..|+|+|++|+|||||++.|.+.
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 56899999999999999999886
No 275
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=91.76 E-value=0.22 Score=51.79 Aligned_cols=66 Identities=18% Similarity=0.167 Sum_probs=45.5
Q ss_pred cCeEEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhh------hcCCcE-EEEeccccc
Q 047363 72 KDYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWI------EKLTPC-LVLNKIDRL 139 (876)
Q Consensus 72 ~~~~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~------~~ip~i-lviNKiD~~ 139 (876)
..|.+.|||||+.... ....++..||.+|+|+.+.......+..+++.+.. .+++++ +|+|+.|..
T Consensus 110 ~~yD~iiiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~~ 182 (257)
T 1wcv_1 110 EGYDLVLLDAPPSLSP--LTLNALAAAEGVVVPVQAEYYALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDGR 182 (257)
T ss_dssp TTCSEEEEECCSSCCH--HHHHHHHHCSEEEEEEESSTHHHHHHHHHHHHHHHHHHHTCTTCEEEEEEEESBCTT
T ss_pred cCCCEEEEeCCCCCCH--HHHHHHHHCCeEEEEecCchHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeECCC
Confidence 4689999999997653 45677889999999999865433333334433322 245664 889999864
No 276
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=91.68 E-value=0.29 Score=55.11 Aligned_cols=25 Identities=12% Similarity=0.213 Sum_probs=22.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHh
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
..+-|.++|.+|+||||++..|...
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4577999999999999999999766
No 277
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=91.56 E-value=0.12 Score=51.86 Aligned_cols=25 Identities=40% Similarity=0.341 Sum_probs=22.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHh
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
.-..|+|+|+.|+|||||++.|.+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 4467999999999999999999876
No 278
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=91.54 E-value=0.092 Score=52.90 Aligned_cols=23 Identities=22% Similarity=0.241 Sum_probs=21.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 047363 10 RNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
..++|+|+.|+|||||++.|.+.
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 56899999999999999999877
No 279
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=91.37 E-value=0.12 Score=51.04 Aligned_cols=25 Identities=28% Similarity=0.387 Sum_probs=22.4
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHh
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
+++.|+|+|+.|+|||||+.+|+..
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 5788999999999999999999876
No 280
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=91.36 E-value=0.1 Score=51.32 Aligned_cols=24 Identities=25% Similarity=0.302 Sum_probs=21.1
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHh
Q 047363 9 IRNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
-..|+|+|++|+|||||++.|...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 367999999999999999999654
No 281
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=91.28 E-value=0.11 Score=56.12 Aligned_cols=49 Identities=16% Similarity=0.199 Sum_probs=37.9
Q ss_pred HHHHhcCeEEEEEcCCCccccch--HHHHHHhhhhcCCcEEEEeccccccc
Q 047363 93 TAARLSDGALVLVDAVEGVHIQT--HAVLRQSWIEKLTPCLVLNKIDRLIS 141 (876)
Q Consensus 93 ~al~~aDgaIlVvDa~egv~~~t--~~~l~~~~~~~ip~ilviNKiD~~~~ 141 (876)
.++..+|.+++|+|+.++..... .+.+..++..++|+++|+||+|+...
T Consensus 82 ~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~~~~~vivlnK~DL~~~ 132 (307)
T 1t9h_A 82 PPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIED 132 (307)
T ss_dssp TTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCCC
T ss_pred HHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCccCch
Confidence 36888999999999987654332 34455556789999999999999753
No 282
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=91.18 E-value=0.13 Score=51.36 Aligned_cols=22 Identities=23% Similarity=0.451 Sum_probs=20.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHHH
Q 047363 10 RNISILAHVDHGKTTLADHLIA 31 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~ 31 (876)
++|+|+|.+|+||||+++.|..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 5799999999999999999975
No 283
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=91.07 E-value=0.12 Score=49.96 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=21.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 047363 10 RNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
++|+|+|++|+|||||+..|...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999876
No 284
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=91.06 E-value=0.14 Score=50.00 Aligned_cols=24 Identities=13% Similarity=0.087 Sum_probs=21.7
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHh
Q 047363 9 IRNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
++.|+|.|.+|+||||++..|...
T Consensus 1 M~~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 1 MKIGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 367999999999999999999876
No 285
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=91.01 E-value=0.11 Score=52.99 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=21.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 047363 10 RNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
..++|+|+.|+|||||++.|.+.
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 56899999999999999999887
No 286
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=90.98 E-value=0.081 Score=52.21 Aligned_cols=24 Identities=33% Similarity=0.433 Sum_probs=21.4
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHh
Q 047363 9 IRNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
+..|+|+|++|+|||||++.|++.
T Consensus 2 ~~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 2 SLILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp -CEEEEEESCHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999999876
No 287
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=90.97 E-value=0.15 Score=51.57 Aligned_cols=25 Identities=8% Similarity=0.347 Sum_probs=22.6
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHh
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
+-+-|+|+|++|+|||||+++|+..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhh
Confidence 4478999999999999999999987
No 288
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=90.94 E-value=0.12 Score=51.95 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=22.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHh
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
.-..|+|+|++|+|||||++.|.+.
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3467999999999999999999776
No 289
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=90.82 E-value=0.14 Score=48.91 Aligned_cols=22 Identities=27% Similarity=0.308 Sum_probs=20.1
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 047363 10 RNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
+.|+|+|.+|+||||+++.| ..
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~ 23 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KE 23 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HH
T ss_pred cEEEEECCCCCCHHHHHHHH-HH
Confidence 47999999999999999999 65
No 290
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=90.81 E-value=0.13 Score=51.96 Aligned_cols=24 Identities=17% Similarity=0.098 Sum_probs=21.9
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHh
Q 047363 9 IRNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
-+.|+|+|++|+|||||++.|...
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 467999999999999999999876
No 291
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=90.73 E-value=0.12 Score=51.69 Aligned_cols=23 Identities=39% Similarity=0.465 Sum_probs=21.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 047363 10 RNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
|-|+|+|++|+|||||+++|+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 56899999999999999999876
No 292
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=90.71 E-value=0.15 Score=50.36 Aligned_cols=25 Identities=40% Similarity=0.430 Sum_probs=22.7
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHh
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
.++.++|+|++|+|||||+++|+..
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHh
Confidence 4678999999999999999999875
No 293
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=90.67 E-value=0.14 Score=50.99 Aligned_cols=23 Identities=17% Similarity=0.176 Sum_probs=21.1
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 047363 10 RNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
..|+|+|++|+|||||++.|...
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999876
No 294
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=90.65 E-value=0.15 Score=50.86 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=22.9
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHh
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
..++|+|+|.+|+||||+...|...
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 4579999999999999999999877
No 295
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=90.60 E-value=0.14 Score=52.60 Aligned_cols=23 Identities=22% Similarity=0.263 Sum_probs=21.5
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 047363 10 RNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
+.++|+|+.|+|||||++.|.+.
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 67899999999999999999887
No 296
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=90.56 E-value=0.14 Score=49.87 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=21.1
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 047363 10 RNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
..++++|+.|+|||||++.|.+.
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999887
No 297
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=90.40 E-value=0.17 Score=49.32 Aligned_cols=26 Identities=31% Similarity=0.333 Sum_probs=23.0
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHh
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
.+.++|.|+|.+|+||||++..|...
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 34578999999999999999999876
No 298
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=90.21 E-value=0.23 Score=49.37 Aligned_cols=28 Identities=21% Similarity=0.325 Sum_probs=24.7
Q ss_pred CCCCceEEEEEeCCCCcHHHHHHHHHHh
Q 047363 5 DTRKIRNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 5 ~~~~irnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
.+.+.+.|+|.|.+|+||||++..|...
T Consensus 11 ~~~~~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 11 SPDQVSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp CTTTCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3456789999999999999999999877
No 299
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=90.16 E-value=0.15 Score=51.01 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=21.9
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHh
Q 047363 9 IRNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
-..|+|+|++|+|||||++.|...
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh
Confidence 367999999999999999999877
No 300
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=90.14 E-value=0.17 Score=50.46 Aligned_cols=24 Identities=17% Similarity=0.349 Sum_probs=22.0
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHh
Q 047363 9 IRNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
.+.|+|+|.+|+||||++..|...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999877
No 301
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=89.96 E-value=0.2 Score=51.35 Aligned_cols=29 Identities=24% Similarity=0.313 Sum_probs=25.0
Q ss_pred CCCCCceEEEEEeCCCCcHHHHHHHHHHh
Q 047363 4 SDTRKIRNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 4 ~~~~~irnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
....+.|.|.|+|++||||+|++..|...
T Consensus 24 ~~~~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 24 QKLAKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp CCTTSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred hhccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34456688999999999999999999887
No 302
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=89.92 E-value=0.18 Score=49.64 Aligned_cols=23 Identities=26% Similarity=0.248 Sum_probs=20.6
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 047363 10 RNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
..|+++|++|+|||||++.|...
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhcc
Confidence 46899999999999999999765
No 303
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=89.75 E-value=0.16 Score=50.86 Aligned_cols=25 Identities=20% Similarity=0.348 Sum_probs=22.6
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHh
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
.-+.|+|+|++|+|||||++.|...
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4478999999999999999999877
No 304
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=89.71 E-value=0.2 Score=49.01 Aligned_cols=24 Identities=25% Similarity=0.459 Sum_probs=22.3
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHh
Q 047363 9 IRNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
.++|+++|.+|+||||+...|...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999999877
No 305
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=89.65 E-value=0.2 Score=52.46 Aligned_cols=21 Identities=19% Similarity=0.322 Sum_probs=18.8
Q ss_pred eEEEEEeCCCCcHHHHHHHHH
Q 047363 10 RNISILAHVDHGKTTLADHLI 30 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll 30 (876)
..++|+|+.|+|||||++.|.
T Consensus 27 e~~~liG~NGsGKSTLlk~l~ 47 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMA 47 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHh
Confidence 358999999999999999984
No 306
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=89.58 E-value=0.16 Score=49.61 Aligned_cols=21 Identities=19% Similarity=0.352 Sum_probs=18.5
Q ss_pred eEEEEEeCCCCcHHHHHHHHH
Q 047363 10 RNISILAHVDHGKTTLADHLI 30 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll 30 (876)
..++++|++|+|||||++.+.
T Consensus 10 ei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 468999999999999999854
No 307
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=89.57 E-value=0.23 Score=52.46 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=19.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHHH
Q 047363 10 RNISILAHVDHGKTTLADHLIA 31 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~ 31 (876)
..++|+|+.|+|||||++.|.+
T Consensus 38 e~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 3589999999999999999943
No 308
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=89.50 E-value=0.2 Score=48.37 Aligned_cols=22 Identities=32% Similarity=0.385 Sum_probs=20.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHHH
Q 047363 10 RNISILAHVDHGKTTLADHLIA 31 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~ 31 (876)
+.|+|.|.+|+||||++..|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999987
No 309
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=89.42 E-value=0.27 Score=51.11 Aligned_cols=22 Identities=23% Similarity=0.193 Sum_probs=19.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHHH
Q 047363 10 RNISILAHVDHGKTTLADHLIA 31 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~ 31 (876)
..++|+|+.|+|||||++.|.+
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4589999999999999999944
No 310
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=89.37 E-value=0.19 Score=50.20 Aligned_cols=22 Identities=23% Similarity=0.363 Sum_probs=20.0
Q ss_pred eEEEEEeCCCCcHHHHHHHHHH
Q 047363 10 RNISILAHVDHGKTTLADHLIA 31 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~ 31 (876)
+.|+|+|++||||||+.+.|..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999954
No 311
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=89.35 E-value=0.25 Score=48.79 Aligned_cols=26 Identities=27% Similarity=0.286 Sum_probs=22.7
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHh
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
.+...|+|+|.+||||||+...|...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 45678999999999999999988654
No 312
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=89.26 E-value=0.21 Score=50.51 Aligned_cols=23 Identities=30% Similarity=0.290 Sum_probs=21.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 047363 10 RNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
..|+|+|++|+||||+++.|...
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999876
No 313
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=89.20 E-value=0.19 Score=48.79 Aligned_cols=24 Identities=33% Similarity=0.501 Sum_probs=21.4
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHh
Q 047363 9 IRNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
+++|+|+|.+|+||||+...|...
T Consensus 4 m~~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 4 AKNIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp -CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999876
No 314
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=89.09 E-value=0.58 Score=49.56 Aligned_cols=23 Identities=35% Similarity=0.382 Sum_probs=21.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 047363 10 RNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
.++.+.|++|+|||+++.+|...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 58999999999999999999876
No 315
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=88.97 E-value=0.87 Score=49.02 Aligned_cols=26 Identities=27% Similarity=0.256 Sum_probs=22.8
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHh
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
...++|.|.|++|+|||+|+.++...
T Consensus 53 ~~~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 53 ECLDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp SCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 34578999999999999999999766
No 316
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=88.97 E-value=0.15 Score=52.89 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=19.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHHH
Q 047363 10 RNISILAHVDHGKTTLADHLIA 31 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~ 31 (876)
..++|+|+.|+|||||++.|.+
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 4589999999999999999843
No 317
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=88.96 E-value=0.19 Score=49.03 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=21.7
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHh
Q 047363 9 IRNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
-++++++|++|+|||||+.++.+.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999876
No 318
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=88.94 E-value=0.23 Score=49.01 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=20.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHHh
Q 047363 11 NISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
.|+|.|.+|+||||++..|...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 6899999999999999999876
No 319
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=88.91 E-value=1.5 Score=50.61 Aligned_cols=25 Identities=24% Similarity=0.203 Sum_probs=22.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHh
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
..+.+.|.|++|+|||||+.++...
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~ 100 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQE 100 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3579999999999999999999887
No 320
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=88.86 E-value=0.16 Score=52.09 Aligned_cols=20 Identities=35% Similarity=0.313 Sum_probs=18.4
Q ss_pred EEEEEeCCCCcHHHHHHHHH
Q 047363 11 NISILAHVDHGKTTLADHLI 30 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll 30 (876)
.++|+|+.|+|||||++.|.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~ 51 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILG 51 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58999999999999999984
No 321
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=88.77 E-value=0.23 Score=51.31 Aligned_cols=24 Identities=21% Similarity=0.295 Sum_probs=21.7
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHh
Q 047363 9 IRNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
...|+|+|++|+|||||++.|...
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~ 50 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQN 50 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999866
No 322
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=88.69 E-value=0.32 Score=48.64 Aligned_cols=26 Identities=38% Similarity=0.348 Sum_probs=22.3
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHh
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
.....|+|+|.+|+|||||++.|...
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34578999999999999999999764
No 323
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=88.59 E-value=0.26 Score=47.75 Aligned_cols=23 Identities=22% Similarity=0.250 Sum_probs=21.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 047363 10 RNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
+.|.+.|.+|+||||+...|...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999887
No 324
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=88.57 E-value=0.31 Score=47.93 Aligned_cols=25 Identities=36% Similarity=0.371 Sum_probs=22.1
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHh
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
+.++|+|+|.+|+||||+...|...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4578999999999999999998765
No 325
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=88.45 E-value=0.25 Score=52.08 Aligned_cols=23 Identities=22% Similarity=0.212 Sum_probs=21.1
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 047363 10 RNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
..++|+|+.|+|||||++.|.+.
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHHh
Confidence 57899999999999999999875
No 326
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=88.37 E-value=0.23 Score=51.69 Aligned_cols=23 Identities=13% Similarity=0.238 Sum_probs=20.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 047363 10 RNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
..++|+|+.|+|||||++.|.+.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999999644
No 327
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=88.29 E-value=0.28 Score=48.90 Aligned_cols=24 Identities=29% Similarity=0.108 Sum_probs=21.7
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHh
Q 047363 9 IRNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
-..|+|+|++|+|||||...|...
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999776
No 328
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=88.28 E-value=0.33 Score=47.62 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=22.5
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHh
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
+.+.|+|.|.+|+||||++..|...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999876
No 329
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=88.24 E-value=0.27 Score=47.29 Aligned_cols=26 Identities=23% Similarity=0.474 Sum_probs=21.7
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHh
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
..+.||+|.|.+||||||+...|...
T Consensus 5 ~~~~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 5 HHMQHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp ---CEEEEESCTTSSHHHHHHHHHHH
T ss_pred cccceEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999999876
No 330
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=88.14 E-value=0.42 Score=46.56 Aligned_cols=24 Identities=17% Similarity=0.225 Sum_probs=21.9
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHh
Q 047363 9 IRNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
.+.|+|.|.+|+||||++..|...
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999999999876
No 331
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=88.11 E-value=0.25 Score=51.14 Aligned_cols=23 Identities=17% Similarity=0.310 Sum_probs=21.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 047363 10 RNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
..|+|+|+.|+|||||++.|.+.
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 56999999999999999999876
No 332
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=88.03 E-value=0.26 Score=53.23 Aligned_cols=24 Identities=21% Similarity=0.369 Sum_probs=21.8
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHhh
Q 047363 10 RNISILAHVDHGKTTLADHLIAAT 33 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~t 33 (876)
..++|+|++|+|||||++.|.+..
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhhhc
Confidence 578999999999999999998873
No 333
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=88.02 E-value=0.32 Score=52.61 Aligned_cols=26 Identities=31% Similarity=0.161 Sum_probs=22.6
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHh
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
..-..|+|+|+.|+|||||++.|.+.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhh
Confidence 44567999999999999999999775
No 334
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=88.02 E-value=0.33 Score=47.49 Aligned_cols=24 Identities=33% Similarity=0.365 Sum_probs=21.8
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHh
Q 047363 9 IRNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
-+.|+|.|.+|+||||++..|...
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999876
No 335
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=88.01 E-value=0.29 Score=47.70 Aligned_cols=23 Identities=13% Similarity=0.141 Sum_probs=21.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 047363 10 RNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
+.|+|.|.+|+||||++..|...
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999875
No 336
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=87.99 E-value=1.4 Score=49.91 Aligned_cols=80 Identities=18% Similarity=0.278 Sum_probs=45.9
Q ss_pred CCCceEEEEEeCCCCcHHHHHHHHHHhhCC--CC-----cccccCCceeeccChhhhhhcceeeeeeEEEEEEc---CeE
Q 047363 6 TRKIRNISILAHVDHGKTTLADHLIAATGG--GL-----LHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYK---DYA 75 (876)
Q Consensus 6 ~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~--g~-----i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~---~~~ 75 (876)
...+..|+|+|..++|||+|+|.|+..... |. -.... ..+.+.. ...-..+||-+-..++.+... +..
T Consensus 64 ~~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~-~gF~~~~-~~~~~TkGIWmw~~p~~~~~~~g~~~~ 141 (457)
T 4ido_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPL-TGFSWRG-GSERETTGIQIWSEIFLINKPDGKKVA 141 (457)
T ss_dssp TSBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCC-CSSCCCC-SSSCCCCSEEEESSCEEEECTTSCEEE
T ss_pred CCceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCC-CCceeCC-CCCCcCceEEEecCcccccCCCCCeeE
Confidence 456888999999999999999988754100 10 00000 0111111 111224577666555544432 367
Q ss_pred EEEEcCCCCccc
Q 047363 76 INLIDSPGHMDF 87 (876)
Q Consensus 76 inlIDTPGh~dF 87 (876)
+.++||.|..+-
T Consensus 142 vlllDTEG~~d~ 153 (457)
T 4ido_A 142 VLLMDTQGTFDS 153 (457)
T ss_dssp EEEEEECCBTCT
T ss_pred EEEEeccCCCCc
Confidence 899999996543
No 337
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=87.98 E-value=0.32 Score=48.93 Aligned_cols=22 Identities=18% Similarity=0.398 Sum_probs=20.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHHh
Q 047363 11 NISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
+|+|+|.+|+||||++..|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999877
No 338
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=87.96 E-value=0.38 Score=48.12 Aligned_cols=26 Identities=31% Similarity=0.245 Sum_probs=22.5
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHh
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
.+-..|+|+|.+|+|||||++.|...
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34567999999999999999999765
No 339
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=87.91 E-value=0.29 Score=49.36 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=20.8
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 047363 10 RNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
..++|+|++|+|||||+..|...
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999875
No 340
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=87.91 E-value=2.2 Score=45.92 Aligned_cols=26 Identities=19% Similarity=0.304 Sum_probs=22.3
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHh
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
.+..++.+.|++|+|||||+..|.+.
T Consensus 34 ~~~~~~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 34 RDLPHLLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp TCCCCEEEECSTTSSHHHHHHTHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 34556999999999999999999874
No 341
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=87.88 E-value=0.18 Score=51.46 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=15.7
Q ss_pred eEEEEEeCCCCcHHHHHHHHH-Hh
Q 047363 10 RNISILAHVDHGKTTLADHLI-AA 32 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll-~~ 32 (876)
..|+|+|+.|+|||||++.|. +.
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC--
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 568999999999999999998 65
No 342
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=87.80 E-value=0.38 Score=52.27 Aligned_cols=27 Identities=30% Similarity=0.210 Sum_probs=23.2
Q ss_pred CCCceEEEEEeCCCCcHHHHHHHHHHh
Q 047363 6 TRKIRNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 6 ~~~irnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
..+...|+|+|++|||||||++.|...
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 345568999999999999999999766
No 343
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=87.76 E-value=0.37 Score=48.99 Aligned_cols=26 Identities=15% Similarity=0.296 Sum_probs=22.3
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHh
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
.+.+.|+|+|.+|+||||++..|...
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999999877
No 344
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=87.69 E-value=0.21 Score=50.69 Aligned_cols=22 Identities=27% Similarity=0.099 Sum_probs=19.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHHh
Q 047363 11 NISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
.++|+|+.|+|||||++.|.+.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999764
No 345
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=87.68 E-value=0.27 Score=49.19 Aligned_cols=22 Identities=23% Similarity=0.226 Sum_probs=20.1
Q ss_pred EEEEEeCCCCcHHHHHHHHHHh
Q 047363 11 NISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
.++|+|+.|+|||||+..|.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5899999999999999999876
No 346
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=87.64 E-value=0.33 Score=47.36 Aligned_cols=24 Identities=25% Similarity=0.224 Sum_probs=21.6
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHh
Q 047363 9 IRNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
-..|+++|.+||||||++..|...
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999876
No 347
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=87.63 E-value=0.22 Score=51.67 Aligned_cols=22 Identities=27% Similarity=0.514 Sum_probs=19.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHHH
Q 047363 10 RNISILAHVDHGKTTLADHLIA 31 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~ 31 (876)
..++|+|+.|+|||||++.|.+
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~G 53 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLA 53 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3589999999999999999943
No 348
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=87.62 E-value=0.2 Score=52.80 Aligned_cols=22 Identities=27% Similarity=0.311 Sum_probs=19.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHHH
Q 047363 10 RNISILAHVDHGKTTLADHLIA 31 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~ 31 (876)
..++|+|+.|+|||||++.|.+
T Consensus 33 e~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3589999999999999999843
No 349
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=87.61 E-value=0.37 Score=50.04 Aligned_cols=26 Identities=12% Similarity=0.198 Sum_probs=22.7
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHh
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
.+...|+|.|.+||||||++..|...
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 35678999999999999999999876
No 350
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=87.60 E-value=0.31 Score=48.90 Aligned_cols=22 Identities=32% Similarity=0.468 Sum_probs=20.5
Q ss_pred EEEEEeCCCCcHHHHHHHHHHh
Q 047363 11 NISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
+|+|.|.+|+||||++..|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999776
No 351
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=87.56 E-value=0.8 Score=53.76 Aligned_cols=130 Identities=13% Similarity=0.052 Sum_probs=0.0
Q ss_pred CCCCCCCCceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccCh---hhhhhcceeeeeeEEEEE-------
Q 047363 1 MGDSDTRKIRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYL---DEEQRRAITMKSSSIALH------- 70 (876)
Q Consensus 1 m~~~~~~~irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~---~~E~~rgiti~~~~i~~~------- 70 (876)
| ...+...|.+.+.|.+|+||||++-.|... -.+.-.++-+.|.. .....-|.........+.
T Consensus 1 ~-~~~~~~~~i~~~sgkGGvGKTT~a~~lA~~------lA~~G~rVLlvd~D~~~~l~~~l~~~~~~~~~~v~~~~~l~~ 73 (589)
T 1ihu_A 1 M-QFLQNIPPYLFFTGKGGVGKTSISCATAIR------LAEQGKRVLLVSTDPASNVGQVFSQTIGNTIQAIASVPGLSA 73 (589)
T ss_dssp C-GGGSSCCSEEEEECSTTSSHHHHHHHHHHH------HHHTTCCEEEEECCTTCCHHHHTTSCCCSSCEECTTSTTEEE
T ss_pred C-CCCCCCCEEEEEeCCCcCHHHHHHHHHHHH------HHHCCCcEEEEECCCCcCHHHHhCCcccCCCceeccchhhhh
Q ss_pred -----------------------------------------------------------EcCeEEEEEcCC---------
Q 047363 71 -----------------------------------------------------------YKDYAINLIDSP--------- 82 (876)
Q Consensus 71 -----------------------------------------------------------~~~~~inlIDTP--------- 82 (876)
...|.+.+||||
T Consensus 74 ~~~d~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~l~~~~~~e~~~~~~~~~ll~~~~l~~~yD~VIiDt~P~~~~lrll 153 (589)
T 1ihu_A 74 LEIDPQAAAQQYRARIVDPIKGVLPDDVVSSINEQLSGACTTEIAAFDEFTGLLTDASLLTRFDHIIFDTAPTGHTIRLL 153 (589)
T ss_dssp EECCHHHHHHHHHHHHHGGGTTTSCHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHCTTHHHHCSEEEESSCCCHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHhcccchHHHHHHHHHHHHHhchhhcccCCEEEECCCCchhHHHHH
Q ss_pred ------------------------CCccchHHHHHHHH-hcC----eEEEEEcCCCccccchHHHHHHhhhhcCCcE-EE
Q 047363 83 ------------------------GHMDFCSEVSTAAR-LSD----GALVLVDAVEGVHIQTHAVLRQSWIEKLTPC-LV 132 (876)
Q Consensus 83 ------------------------Gh~dF~~e~~~al~-~aD----gaIlVvDa~egv~~~t~~~l~~~~~~~ip~i-lv 132 (876)
|...+......... .+| .+++|+.+.......+...++.+.+.+++.. +|
T Consensus 154 ~lP~~~~~~l~~~~~~~~~l~~~~~l~~~~~~~~~~~~~l~d~~~t~vvlV~~~~~~~~~~~~~~~~~L~~~g~~~~gvV 233 (589)
T 1ihu_A 154 QLPGAWSSFIDSNPEGASCLGPMAGLEKQREQYAYAVEALSDPKRTRLVLVARLQKSTLQEVARTHLELAAIGLKNQYLV 233 (589)
T ss_dssp HCGGGGTCCC------CCCCGGGGGCCSCHHHHHHHHHHHHCTTTEEEEEEEESCHHHHHHHHHHHHHHHHHTCCCEEEE
T ss_pred HhHHHHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHhcCCCCcEEEEEeCCCccHHHHHHHHHHHHHhCCCCCCEEE
Q ss_pred Eeccc
Q 047363 133 LNKID 137 (876)
Q Consensus 133 iNKiD 137 (876)
+|+++
T Consensus 234 lN~v~ 238 (589)
T 1ihu_A 234 INGVL 238 (589)
T ss_dssp EEEEC
T ss_pred EcCCc
No 352
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=87.54 E-value=0.26 Score=51.52 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=19.5
Q ss_pred eEEEEEeCCCCcHHHHHHHHHH
Q 047363 10 RNISILAHVDHGKTTLADHLIA 31 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~ 31 (876)
..++|+|+.|+|||||++.|.+
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 3589999999999999999964
No 353
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=87.51 E-value=1.6 Score=48.16 Aligned_cols=44 Identities=27% Similarity=0.254 Sum_probs=30.5
Q ss_pred HHhcCeEEEEEcCCCccccch---HHHHHHhhhhcCCcEEEEecccccc
Q 047363 95 ARLSDGALVLVDAVEGVHIQT---HAVLRQSWIEKLTPCLVLNKIDRLI 140 (876)
Q Consensus 95 l~~aDgaIlVvDa~egv~~~t---~~~l~~~~~~~ip~ilviNKiD~~~ 140 (876)
+..+|.+++| |+.... ... .+.+..+...++|++||+||+|+..
T Consensus 128 ~anvD~v~iv-~a~~P~-~~~~~i~r~L~~a~~~~~~~iivlNK~DL~~ 174 (358)
T 2rcn_A 128 AANIDQIVIV-SAILPE-LSLNIIDRYLVGCETLQVEPLIVLNKIDLLD 174 (358)
T ss_dssp EECCCEEEEE-EESTTT-CCHHHHHHHHHHHHHHTCEEEEEEECGGGCC
T ss_pred HhcCCEEEEE-EeCCCC-CCHHHHHHHHHHHHhcCCCEEEEEECccCCC
Confidence 5778998876 555432 222 3344455678999999999999975
No 354
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=87.44 E-value=0.35 Score=48.95 Aligned_cols=25 Identities=16% Similarity=0.126 Sum_probs=22.7
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHh
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
+.++|+|+|.+|+||||++..|...
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999877
No 355
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=87.43 E-value=0.22 Score=51.24 Aligned_cols=22 Identities=18% Similarity=0.335 Sum_probs=19.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHHH
Q 047363 10 RNISILAHVDHGKTTLADHLIA 31 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~ 31 (876)
..++|+|+.|+|||||++.|.+
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~G 56 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMG 56 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 3589999999999999999943
No 356
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=87.43 E-value=0.22 Score=52.19 Aligned_cols=22 Identities=23% Similarity=0.283 Sum_probs=19.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHHH
Q 047363 10 RNISILAHVDHGKTTLADHLIA 31 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~ 31 (876)
..++|+|+.|+|||||++.|.+
T Consensus 34 e~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 3589999999999999999943
No 357
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=87.37 E-value=0.34 Score=50.58 Aligned_cols=23 Identities=22% Similarity=0.107 Sum_probs=21.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 047363 10 RNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
+.|+|+|++|+|||||...|...
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhc
Confidence 57899999999999999999877
No 358
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=87.35 E-value=1.5 Score=42.98 Aligned_cols=24 Identities=25% Similarity=0.183 Sum_probs=21.3
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHh
Q 047363 9 IRNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
.+++.|.|++|+|||+|+..+...
T Consensus 38 ~~~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 38 IPHLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 456999999999999999999775
No 359
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=87.32 E-value=0.21 Score=53.07 Aligned_cols=21 Identities=29% Similarity=0.297 Sum_probs=18.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHH
Q 047363 11 NISILAHVDHGKTTLADHLIA 31 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~ 31 (876)
.++|+|+.|+|||||++.|.+
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 489999999999999999943
No 360
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=87.27 E-value=0.36 Score=47.19 Aligned_cols=23 Identities=17% Similarity=0.226 Sum_probs=21.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 047363 10 RNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
+.|+|.|.+|+||||++..|...
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 67999999999999999999876
No 361
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=87.26 E-value=0.36 Score=48.77 Aligned_cols=25 Identities=20% Similarity=0.206 Sum_probs=22.6
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHh
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
+..+|+|+|.+|+||||++..|...
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999876
No 362
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=87.21 E-value=0.24 Score=51.75 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=19.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHHH
Q 047363 10 RNISILAHVDHGKTTLADHLIA 31 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~ 31 (876)
..++|+|+.|+|||||++.|.+
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3589999999999999999843
No 363
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=87.17 E-value=0.22 Score=50.84 Aligned_cols=21 Identities=24% Similarity=0.246 Sum_probs=18.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHH
Q 047363 11 NISILAHVDHGKTTLADHLIA 31 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~ 31 (876)
.++|+|+.|+|||||++.|.+
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999843
No 364
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=87.15 E-value=0.22 Score=51.64 Aligned_cols=22 Identities=18% Similarity=0.308 Sum_probs=19.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHHH
Q 047363 10 RNISILAHVDHGKTTLADHLIA 31 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~ 31 (876)
..++|+|+.|+|||||++.|.+
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 3589999999999999999843
No 365
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=87.11 E-value=0.43 Score=51.33 Aligned_cols=26 Identities=42% Similarity=0.280 Sum_probs=22.6
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHh
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
.+-..|+|+|+.|+|||||++.|.+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34467999999999999999999875
No 366
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=87.06 E-value=0.39 Score=47.22 Aligned_cols=23 Identities=26% Similarity=0.367 Sum_probs=21.5
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 047363 10 RNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
+.|+|.|.+|+||||++..|...
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 67999999999999999999876
No 367
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=87.00 E-value=0.37 Score=47.83 Aligned_cols=23 Identities=22% Similarity=0.050 Sum_probs=21.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 047363 10 RNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
+.|+|.|.+|+||||+++.|...
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 67999999999999999999876
No 368
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=86.99 E-value=0.21 Score=49.90 Aligned_cols=22 Identities=36% Similarity=0.347 Sum_probs=20.4
Q ss_pred EEEEEeCCCCcHHHHHHHHHHh
Q 047363 11 NISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
.|+|.|..|+||||+++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999999876
No 369
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=86.95 E-value=0.32 Score=49.66 Aligned_cols=23 Identities=26% Similarity=0.366 Sum_probs=20.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 047363 10 RNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
..++|+|+.|+|||||+..|+..
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~~ 53 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHH
Confidence 46899999999999999999743
No 370
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=86.89 E-value=0.25 Score=51.97 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=19.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHHH
Q 047363 10 RNISILAHVDHGKTTLADHLIA 31 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~ 31 (876)
..++|+|+.|+|||||++.|.+
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3589999999999999999943
No 371
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=86.87 E-value=0.48 Score=46.39 Aligned_cols=25 Identities=28% Similarity=0.194 Sum_probs=22.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHh
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
+-..|+++|.+|+||||++..|...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999766
No 372
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=86.86 E-value=0.33 Score=46.68 Aligned_cols=23 Identities=26% Similarity=0.278 Sum_probs=21.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 047363 10 RNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
+.|+|.|.+|+||||++..|...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999876
No 373
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=86.84 E-value=0.42 Score=51.16 Aligned_cols=26 Identities=12% Similarity=-0.033 Sum_probs=22.7
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHh
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
.+...|+|+|++|+|||||++.|...
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44567999999999999999998776
No 374
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=86.79 E-value=1.2 Score=48.20 Aligned_cols=26 Identities=23% Similarity=0.273 Sum_probs=23.0
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHh
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
...+++.|.|++|+|||||+..+...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999999876
No 375
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=86.78 E-value=0.28 Score=51.85 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=19.5
Q ss_pred eEEEEEeCCCCcHHHHHHHHHH
Q 047363 10 RNISILAHVDHGKTTLADHLIA 31 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~ 31 (876)
-.++|+|+.|+|||||++.|.+
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 3589999999999999999964
No 376
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=86.69 E-value=1.3 Score=47.10 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=21.7
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHh
Q 047363 9 IRNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
.++|.|.|++|+|||+|+.++...
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~ 61 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHE 61 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999776
No 377
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=86.63 E-value=0.37 Score=47.69 Aligned_cols=24 Identities=21% Similarity=0.105 Sum_probs=21.6
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHh
Q 047363 9 IRNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
-+.|+|.|.+|+||||+++.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 367999999999999999999766
No 378
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=86.62 E-value=0.3 Score=47.49 Aligned_cols=25 Identities=28% Similarity=0.147 Sum_probs=18.0
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHh
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
+.+.|.|.|.+|+||||++..|...
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999999999876
No 379
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=86.57 E-value=0.26 Score=51.95 Aligned_cols=22 Identities=18% Similarity=0.267 Sum_probs=19.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHHH
Q 047363 10 RNISILAHVDHGKTTLADHLIA 31 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~ 31 (876)
..++|+|+.|+|||||++.|.+
T Consensus 51 ei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEEcCCCCcHHHHHHHHHc
Confidence 3589999999999999999843
No 380
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=86.49 E-value=0.55 Score=46.71 Aligned_cols=24 Identities=21% Similarity=0.117 Sum_probs=21.6
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHh
Q 047363 9 IRNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
-+.|+|.|.+|+||||+++.|...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 467999999999999999999765
No 381
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=86.38 E-value=0.27 Score=51.58 Aligned_cols=22 Identities=18% Similarity=0.191 Sum_probs=19.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHHH
Q 047363 10 RNISILAHVDHGKTTLADHLIA 31 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~ 31 (876)
..++|+|+.|+|||||++.|.+
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3589999999999999999943
No 382
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=86.38 E-value=0.45 Score=48.70 Aligned_cols=26 Identities=27% Similarity=0.161 Sum_probs=23.4
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHh
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
.+..+|+|+|.+|+||||++..|...
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999876
No 383
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=86.31 E-value=0.49 Score=49.24 Aligned_cols=24 Identities=25% Similarity=0.253 Sum_probs=21.7
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHh
Q 047363 9 IRNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
...|+|+|+.|+||||++..|...
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~ 50 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAES 50 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh
Confidence 358999999999999999999866
No 384
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=86.25 E-value=0.43 Score=46.65 Aligned_cols=22 Identities=32% Similarity=0.205 Sum_probs=20.2
Q ss_pred EEEEEeCCCCcHHHHHHHHHHh
Q 047363 11 NISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
.|+|.|.+||||||+++.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999775
No 385
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=86.23 E-value=0.28 Score=51.90 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=19.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHHH
Q 047363 10 RNISILAHVDHGKTTLADHLIA 31 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~ 31 (876)
..++|+|+.|+|||||++.|.+
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3589999999999999999843
No 386
>1xe1_A Hypothetical protein PF0907; structural genomics, unknown function, protein structure INI secsg, conserved hypothetical protein; HET: MSE; 2.00A {Pyrococcus furiosus} SCOP: b.43.3.1
Probab=86.21 E-value=1.2 Score=40.81 Aligned_cols=48 Identities=19% Similarity=0.167 Sum_probs=35.8
Q ss_pred EEEEEEEeCccCCCCEEEEeccccCCcchhhhccccceeEEeEEEEecCCceeecceeeCCCeEEEe
Q 047363 440 LAFARIFSGVLYSGQRVFVLSALYDPLKVESMQKHIQEAELQSLYLMMGQGLKPVASAKAGNVVAIR 506 (876)
Q Consensus 440 iaf~RV~SGtL~~G~~v~vlg~~y~~~~~~~~~~~~~~~~I~~L~l~~G~~~~~v~~v~AGnIv~I~ 506 (876)
+-++||-+|+|++|+.| |.-+ ...+|.+|.. ..+++++|.|||-|++.
T Consensus 50 vivGrVe~G~LK~G~~V----Pg~~-----------~vg~VkSIE~----~~e~v~eA~~GdnVai~ 97 (116)
T 1xe1_A 50 VIIGTVESGMIGVGFKV----KGPS-----------GIGGIVRIER----NREKVEFAIAGDRIGIS 97 (116)
T ss_dssp EEEEEEEEEEEETTCEE----ECSS-----------CEEEEEEEEE----TTEEESEEETTCEEEEE
T ss_pred eeEEEEeEEEEcCCCCc----CCCc-----------eEEEEEEEEE----CCcCcCCcCCCCEEEEE
Confidence 66789999999999998 3210 1245666555 45679999999999995
No 387
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=86.20 E-value=0.36 Score=53.32 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=20.7
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 047363 10 RNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
..++|+|++|+|||||++.|++.
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCC
T ss_pred CEEEEECCCCccHHHHHHHHhcc
Confidence 36899999999999999999765
No 388
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=86.04 E-value=0.52 Score=46.77 Aligned_cols=25 Identities=24% Similarity=0.185 Sum_probs=22.2
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHh
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
.-..|+|+|.+|+||||++..|...
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3458999999999999999999876
No 389
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=85.95 E-value=0.3 Score=51.52 Aligned_cols=22 Identities=18% Similarity=0.299 Sum_probs=19.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHHH
Q 047363 10 RNISILAHVDHGKTTLADHLIA 31 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~ 31 (876)
..++|+|+.|+|||||++.|.+
T Consensus 34 e~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 3589999999999999999843
No 390
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=85.90 E-value=0.3 Score=51.98 Aligned_cols=21 Identities=33% Similarity=0.270 Sum_probs=18.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHH
Q 047363 11 NISILAHVDHGKTTLADHLIA 31 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~ 31 (876)
.++|+|+.|+|||||++.|.+
T Consensus 49 ~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 589999999999999999843
No 391
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=85.77 E-value=0.33 Score=53.59 Aligned_cols=23 Identities=35% Similarity=0.469 Sum_probs=21.0
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 047363 10 RNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
.+++|+|+.|+|||||++.|++.
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 47999999999999999999765
No 392
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=85.77 E-value=0.45 Score=46.31 Aligned_cols=22 Identities=18% Similarity=0.350 Sum_probs=20.1
Q ss_pred EEEEEeCCCCcHHHHHHHHHHh
Q 047363 11 NISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
..+|+|+.|+|||||+++|...
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 5689999999999999999876
No 393
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=85.77 E-value=0.28 Score=51.35 Aligned_cols=21 Identities=33% Similarity=0.528 Sum_probs=18.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHH
Q 047363 11 NISILAHVDHGKTTLADHLIA 31 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~ 31 (876)
.++|+|+.|+|||||++.|.+
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999943
No 394
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=85.77 E-value=0.56 Score=46.69 Aligned_cols=24 Identities=25% Similarity=0.176 Sum_probs=21.6
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHh
Q 047363 9 IRNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
-+.|+|.|.+|+||||+++.|...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 367999999999999999999865
No 395
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=85.58 E-value=0.52 Score=49.96 Aligned_cols=26 Identities=15% Similarity=0.253 Sum_probs=22.7
Q ss_pred CCCceEEEEEeCCCCcHHHHHHHHHH
Q 047363 6 TRKIRNISILAHVDHGKTTLADHLIA 31 (876)
Q Consensus 6 ~~~irnI~IvG~~~~GKTTL~~~Ll~ 31 (876)
+.+.+.|+|.|.+||||||+++.|..
T Consensus 72 ~~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 72 PSGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CTTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34568899999999999999999973
No 396
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=85.57 E-value=0.43 Score=52.59 Aligned_cols=23 Identities=13% Similarity=0.167 Sum_probs=21.0
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 047363 10 RNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
..|+|+|+.|||||||+++|++.
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 47999999999999999999875
No 397
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=85.51 E-value=0.5 Score=49.34 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=22.3
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHh
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
++..|+|.|.+|+||||++..|...
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999764
No 398
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=85.50 E-value=0.49 Score=45.44 Aligned_cols=25 Identities=20% Similarity=0.279 Sum_probs=22.4
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHh
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
..+++.|.|++|+|||+|+..+...
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999876
No 399
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=85.48 E-value=0.48 Score=45.34 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=20.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHHh
Q 047363 11 NISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
+|+|.|.+|+||||++..|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999876
No 400
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=85.47 E-value=0.32 Score=46.56 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=21.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 047363 10 RNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
.+++|+|++|+|||||+..+...
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999876
No 401
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=85.45 E-value=1.8 Score=47.63 Aligned_cols=23 Identities=48% Similarity=0.576 Sum_probs=20.9
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 047363 10 RNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
+.+.|.|++|+|||||+.++...
T Consensus 62 ~i~~I~GppGsGKSTLal~la~~ 84 (356)
T 3hr8_A 62 RIVEIFGQESSGKTTLALHAIAE 84 (356)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999876
No 402
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=85.40 E-value=0.53 Score=47.37 Aligned_cols=22 Identities=27% Similarity=0.323 Sum_probs=20.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHHh
Q 047363 11 NISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
+|+|.|.+|+||||++..|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999876
No 403
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=85.39 E-value=0.42 Score=46.65 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=20.9
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 047363 10 RNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
++|+|+|.+|+||||+...|...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 45999999999999999999876
No 404
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=85.33 E-value=0.39 Score=53.06 Aligned_cols=23 Identities=30% Similarity=0.281 Sum_probs=20.0
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 047363 10 RNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
-.++|+|+.|||||||++.|.+.
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCchHHHHHHHHhcC
Confidence 35899999999999999999654
No 405
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=85.32 E-value=0.66 Score=50.43 Aligned_cols=23 Identities=26% Similarity=0.258 Sum_probs=20.0
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 047363 10 RNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
+.+.|.|++|+|||||+.++...
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh
Confidence 45689999999999999999765
No 406
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=85.29 E-value=0.57 Score=48.46 Aligned_cols=25 Identities=20% Similarity=0.078 Sum_probs=22.6
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHh
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
+..+|+|.|.+|+||||++..|...
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999876
No 407
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=85.19 E-value=0.42 Score=52.63 Aligned_cols=24 Identities=29% Similarity=0.501 Sum_probs=21.9
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHh
Q 047363 9 IRNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
-..++|+|+.|+|||||++.|.+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 467899999999999999999877
No 408
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=85.11 E-value=0.48 Score=46.49 Aligned_cols=22 Identities=23% Similarity=0.110 Sum_probs=20.1
Q ss_pred EEEEEeCCCCcHHHHHHHHHHh
Q 047363 11 NISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
.|+|.|..|+||||+++.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999765
No 409
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=84.93 E-value=0.32 Score=53.03 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=20.8
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 047363 10 RNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
.+++|+|+.|+|||||++.|.+.
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGG
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999765
No 410
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=84.85 E-value=0.46 Score=52.62 Aligned_cols=23 Identities=22% Similarity=0.212 Sum_probs=21.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 047363 10 RNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
..|+|+|+.|+|||||++.|++.
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 57999999999999999999875
No 411
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=84.84 E-value=0.39 Score=51.38 Aligned_cols=22 Identities=18% Similarity=0.335 Sum_probs=19.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHHH
Q 047363 10 RNISILAHVDHGKTTLADHLIA 31 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~ 31 (876)
..++|+|+.|+|||||++.|.+
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~G 86 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMG 86 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 4689999999999999999843
No 412
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=84.72 E-value=0.57 Score=47.32 Aligned_cols=25 Identities=20% Similarity=0.307 Sum_probs=22.3
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHh
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
+..+|+|+|.+|+||||++..|...
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999876
No 413
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=84.67 E-value=1.1 Score=49.03 Aligned_cols=23 Identities=43% Similarity=0.486 Sum_probs=20.6
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 047363 10 RNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
+.+.|.|++|+|||||+-.++..
T Consensus 62 ~iv~I~G~pGsGKTtLal~la~~ 84 (349)
T 2zr9_A 62 RVIEIYGPESSGKTTVALHAVAN 84 (349)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 56899999999999999998765
No 414
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=84.62 E-value=0.56 Score=45.60 Aligned_cols=24 Identities=21% Similarity=0.072 Sum_probs=21.4
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHh
Q 047363 9 IRNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
-..|+++|..|+||||++..|...
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999999765
No 415
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=84.58 E-value=0.5 Score=47.91 Aligned_cols=22 Identities=27% Similarity=0.256 Sum_probs=20.7
Q ss_pred EEEEEeCCCCcHHHHHHHHHHh
Q 047363 11 NISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
+|.|+|++||||+|++..|...
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999887
No 416
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=84.46 E-value=0.38 Score=50.68 Aligned_cols=21 Identities=33% Similarity=0.401 Sum_probs=18.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHH
Q 047363 11 NISILAHVDHGKTTLADHLIA 31 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~ 31 (876)
.++|+|+.|+|||||++.|.+
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999843
No 417
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=84.26 E-value=0.62 Score=47.69 Aligned_cols=28 Identities=29% Similarity=0.317 Sum_probs=23.5
Q ss_pred CCCCceEEEEEeCCCCcHHHHHHHHHHh
Q 047363 5 DTRKIRNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 5 ~~~~irnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
.+.+...|+|+|..|+||||+...|...
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4556778999999999999999999875
No 418
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=84.04 E-value=0.44 Score=52.74 Aligned_cols=23 Identities=17% Similarity=0.209 Sum_probs=19.9
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 047363 10 RNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
..++|+|+.|+|||||++.|.+.
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEEcCCCchHHHHHHHHhcC
Confidence 35899999999999999999654
No 419
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=84.04 E-value=0.44 Score=52.53 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=19.5
Q ss_pred EEEEEeCCCCcHHHHHHHHHHh
Q 047363 11 NISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
.++|+|+.|+|||||++.|.+.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5899999999999999999654
No 420
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=84.01 E-value=0.44 Score=52.61 Aligned_cols=23 Identities=26% Similarity=0.225 Sum_probs=19.9
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 047363 10 RNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
..++|+|+.|+|||||++.|.+.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEEcCCCchHHHHHHHHHCC
Confidence 35899999999999999999654
No 421
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=83.89 E-value=0.3 Score=52.73 Aligned_cols=23 Identities=17% Similarity=0.342 Sum_probs=19.9
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 047363 10 RNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
..++|+|+.|+|||||++.|.+.
T Consensus 81 e~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTTS
T ss_pred CEEEEECCCCchHHHHHHHHHcC
Confidence 46899999999999999988543
No 422
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=83.85 E-value=0.6 Score=48.20 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=21.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 047363 10 RNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
+.+.|+|++|+|||||+.++.+.
T Consensus 50 ~g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 56999999999999999999877
No 423
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=83.76 E-value=1.4 Score=44.32 Aligned_cols=67 Identities=12% Similarity=-0.006 Sum_probs=41.8
Q ss_pred CeEEEEEcCCCCccc-----hHHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhhhcCCcE-EEEeccccc
Q 047363 73 DYAINLIDSPGHMDF-----CSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWIEKLTPC-LVLNKIDRL 139 (876)
Q Consensus 73 ~~~inlIDTPGh~dF-----~~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~~~ip~i-lviNKiD~~ 139 (876)
.|.+.||||||...- .....-+....+.+|+|+++..+...++...++.+...+++++ +|+|+.|..
T Consensus 108 ~yD~viID~p~~l~~p~~~~~~~~~l~~~~~~~vi~v~~~~~~~~~~~~~~i~~l~~~~~~i~gvvlN~~~~~ 180 (224)
T 1byi_A 108 QADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQVIQHAGLTLAGWVANDVTPP 180 (224)
T ss_dssp TCSEEEEECSSSTTCEEETTEEHHHHHHHHTCCEEEEEECSTTHHHHHHHHHHHHHHTTCCEEEEEEECCSSC
T ss_pred hCCEEEEEcCCccccCCCcchhHHHHHHHhCCCEEEEecCCCCcHHHHHHHHHHHHHCCCcEEEEEEeCCCCc
Confidence 589999999986531 1112222222345888888754444445555566666677765 789999864
No 424
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=83.75 E-value=0.42 Score=55.36 Aligned_cols=23 Identities=17% Similarity=0.239 Sum_probs=20.8
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 047363 10 RNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
.+|+|+|+.|||||||+++|++.
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGG
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46999999999999999999765
No 425
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=83.68 E-value=0.46 Score=52.52 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=20.0
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 047363 10 RNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
..++|+|+.|+|||||++.|.+.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCchHHHHHHHHhcC
Confidence 35899999999999999999654
No 426
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=83.58 E-value=0.72 Score=46.38 Aligned_cols=22 Identities=18% Similarity=0.357 Sum_probs=20.1
Q ss_pred eEEEEEeCCCCcHHHHHHHHHH
Q 047363 10 RNISILAHVDHGKTTLADHLIA 31 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~ 31 (876)
..|+|.|..||||||+++.|..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999854
No 427
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=83.58 E-value=0.64 Score=49.49 Aligned_cols=25 Identities=16% Similarity=0.199 Sum_probs=22.4
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHh
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
+-+.|.|.|++|+||||++..|...
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999876
No 428
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=83.39 E-value=0.48 Score=52.56 Aligned_cols=23 Identities=22% Similarity=0.205 Sum_probs=19.9
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 047363 10 RNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
..++|+|+.|+|||||++.|.+.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCcHHHHHHHHHHcC
Confidence 35899999999999999999654
No 429
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=83.36 E-value=0.48 Score=52.70 Aligned_cols=23 Identities=17% Similarity=0.229 Sum_probs=20.0
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 047363 10 RNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
-.++|+|+.|+|||||++.|.+.
T Consensus 30 e~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEEcCCCchHHHHHHHHHcC
Confidence 35899999999999999999654
No 430
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=83.29 E-value=0.49 Score=52.52 Aligned_cols=23 Identities=22% Similarity=0.221 Sum_probs=20.0
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 047363 10 RNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
..++|+|+.|+|||||++.|.+.
T Consensus 38 e~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCChHHHHHHHHHcC
Confidence 35899999999999999999654
No 431
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=83.26 E-value=2.4 Score=46.29 Aligned_cols=23 Identities=26% Similarity=0.280 Sum_probs=19.9
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 047363 10 RNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
.-+.|.|.+|+|||||+-.+...
T Consensus 47 ~LiiIaG~pG~GKTt~al~ia~~ 69 (338)
T 4a1f_A 47 SLVIIGARPSMGKTSLMMNMVLS 69 (338)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHH
Confidence 35789999999999999988765
No 432
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=83.24 E-value=0.56 Score=50.25 Aligned_cols=23 Identities=13% Similarity=0.211 Sum_probs=20.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 047363 10 RNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
..++++|++|+|||||++.|.+.
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTT
T ss_pred CeEEEECCCCCcHHHHHHHhccc
Confidence 46899999999999999999654
No 433
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=83.02 E-value=0.71 Score=46.29 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=20.7
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 047363 10 RNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
..++|+|++|+|||||+..|...
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 46899999999999999999865
No 434
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=82.88 E-value=0.71 Score=48.76 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=21.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 047363 10 RNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
+.++++|++|+|||||+++|.+.
T Consensus 45 ~GvlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 55999999999999999999877
No 435
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=82.75 E-value=0.61 Score=48.76 Aligned_cols=23 Identities=22% Similarity=0.427 Sum_probs=21.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 047363 10 RNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
++|+|+|.+|+||||+...|...
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999876
No 436
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=82.72 E-value=0.73 Score=46.83 Aligned_cols=22 Identities=27% Similarity=0.277 Sum_probs=20.5
Q ss_pred EEEEEeCCCCcHHHHHHHHHHh
Q 047363 11 NISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
+|+|.|.+|+||||++..|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999876
No 437
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=82.54 E-value=0.69 Score=52.13 Aligned_cols=23 Identities=17% Similarity=0.076 Sum_probs=21.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 047363 10 RNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
..|+|+|+.|+|||||+++|++.
T Consensus 168 gii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHhh
Confidence 46899999999999999999886
No 438
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=82.43 E-value=0.6 Score=52.13 Aligned_cols=23 Identities=22% Similarity=0.471 Sum_probs=19.9
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 047363 10 RNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
-.++|+|+.|+|||||++.|.+.
T Consensus 48 e~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCChHHHHHHHHhCC
Confidence 35899999999999999998654
No 439
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=82.42 E-value=0.8 Score=45.96 Aligned_cols=24 Identities=29% Similarity=0.156 Sum_probs=21.4
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHh
Q 047363 9 IRNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
-..|+|+|.+|+||||++..|...
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999765
No 440
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=82.39 E-value=0.81 Score=45.74 Aligned_cols=25 Identities=20% Similarity=0.302 Sum_probs=22.3
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHh
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
+-.+|+|+|.+||||||+.+.|...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 4578999999999999999999765
No 441
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=82.38 E-value=0.79 Score=45.37 Aligned_cols=23 Identities=17% Similarity=0.251 Sum_probs=21.5
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 047363 10 RNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
+++.|.|++|+|||+|+.++...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 78999999999999999999876
No 442
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=82.37 E-value=2.3 Score=46.80 Aligned_cols=23 Identities=43% Similarity=0.497 Sum_probs=20.7
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 047363 10 RNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
+.+.|.|.+|+|||||+-.|...
T Consensus 64 ~ii~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 64 RIVEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999998865
No 443
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=82.29 E-value=0.42 Score=52.50 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=20.0
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 047363 10 RNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
..++|+|+.|+|||||++.|.+.
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTS
T ss_pred CEEEEECCCCccHHHHHHHHHcC
Confidence 35899999999999999999644
No 444
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=82.12 E-value=0.65 Score=44.56 Aligned_cols=25 Identities=24% Similarity=0.279 Sum_probs=22.4
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHh
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
..+++.|.|++|+|||||+..+...
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999876
No 445
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=82.00 E-value=0.78 Score=48.16 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=21.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 047363 10 RNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
+.++|+|++|+|||||+.+|...
T Consensus 74 ~gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCcChHHHHHHHHHHH
Confidence 46999999999999999999877
No 446
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=82.00 E-value=0.67 Score=47.36 Aligned_cols=25 Identities=24% Similarity=0.290 Sum_probs=21.3
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHh
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
+-..|+|.|..|+|||||++.|...
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 3467999999999999999988644
No 447
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=81.94 E-value=0.77 Score=43.82 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=19.7
Q ss_pred EEEEEeCCCCcHHHHHHHHHHh
Q 047363 11 NISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
-.+|+|+.|+|||||+++|...
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~ 46 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVG 46 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999765
No 448
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=81.90 E-value=0.81 Score=45.98 Aligned_cols=25 Identities=24% Similarity=0.325 Sum_probs=22.5
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHh
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
..+++.|.|++|+|||||+..+...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999876
No 449
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=81.88 E-value=0.93 Score=46.57 Aligned_cols=43 Identities=7% Similarity=-0.135 Sum_probs=28.4
Q ss_pred CeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEeccccccc
Q 047363 99 DGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKIDRLIS 141 (876)
Q Consensus 99 DgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD~~~~ 141 (876)
+.-+++||-..-........++.+...++|+|++.-..|-...
T Consensus 89 ~~dvViIDEaQ~l~~~~ve~l~~L~~~gi~Vil~Gl~~df~~~ 131 (223)
T 2b8t_A 89 ETKVIGIDEVQFFDDRICEVANILAENGFVVIISGLDKNFKGE 131 (223)
T ss_dssp TCCEEEECSGGGSCTHHHHHHHHHHHTTCEEEEECCSBCTTSS
T ss_pred CCCEEEEecCccCcHHHHHHHHHHHhCCCeEEEEeccccccCC
Confidence 3558889977555433334455544568999999988886543
No 450
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=81.72 E-value=0.62 Score=48.38 Aligned_cols=25 Identities=20% Similarity=0.088 Sum_probs=22.6
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHh
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
....|.++|++|+||||++..|...
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4478999999999999999999887
No 451
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=81.22 E-value=0.8 Score=52.27 Aligned_cols=23 Identities=26% Similarity=0.380 Sum_probs=20.8
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 047363 10 RNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
..++|+|+.|+|||||++.|.+.
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCc
Confidence 45899999999999999999876
No 452
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=81.18 E-value=2.4 Score=46.80 Aligned_cols=23 Identities=39% Similarity=0.387 Sum_probs=20.5
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 047363 10 RNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
+.+.|.|++|+|||||+-.++..
T Consensus 75 ~li~I~G~pGsGKTtlal~la~~ 97 (366)
T 1xp8_A 75 RITEIYGPESGGKTTLALAIVAQ 97 (366)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCChHHHHHHHHHH
Confidence 56889999999999999998765
No 453
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=80.89 E-value=0.91 Score=46.88 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=21.8
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHh
Q 047363 9 IRNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
.++|.+.|++|+|||||+.++...
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 468999999999999999999876
No 454
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=80.87 E-value=0.84 Score=49.49 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=21.9
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHh
Q 047363 9 IRNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
..+++++|++|+|||||+..+.+.
T Consensus 51 ~~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 51 LDHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCCEEEESSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 467999999999999999999877
No 455
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=80.85 E-value=0.42 Score=52.63 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=20.0
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 047363 10 RNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
..++|+|+.|+|||||++.|.+.
T Consensus 32 e~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 35899999999999999999544
No 456
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=80.74 E-value=0.92 Score=48.01 Aligned_cols=23 Identities=17% Similarity=0.192 Sum_probs=20.6
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 047363 10 RNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
..++|+|++|+|||||+..|...
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 46899999999999999999776
No 457
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=80.73 E-value=1.2 Score=45.71 Aligned_cols=25 Identities=20% Similarity=0.166 Sum_probs=22.5
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHh
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
+-..|+|.|.+|+||||+++.|...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999877
No 458
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=80.65 E-value=6.6 Score=41.73 Aligned_cols=24 Identities=33% Similarity=0.362 Sum_probs=18.7
Q ss_pred ceEEEEE-eCCCCcHHHHHHHHHHh
Q 047363 9 IRNISIL-AHVDHGKTTLADHLIAA 32 (876)
Q Consensus 9 irnI~Iv-G~~~~GKTTL~~~Ll~~ 32 (876)
..++.++ |++|+||||++.++...
T Consensus 47 ~~~~~L~~G~~G~GKT~la~~la~~ 71 (324)
T 3u61_B 47 IPHIILHSPSPGTGKTTVAKALCHD 71 (324)
T ss_dssp CCSEEEECSSTTSSHHHHHHHHHHH
T ss_pred CCeEEEeeCcCCCCHHHHHHHHHHH
Confidence 4455555 55999999999999876
No 459
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=80.58 E-value=0.98 Score=44.62 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=20.7
Q ss_pred EEEEEeCCCCcHHHHHHHHHHh
Q 047363 11 NISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
.|+|.|.+|+||||+...|...
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 7999999999999999999876
No 460
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=80.38 E-value=1.7 Score=40.80 Aligned_cols=24 Identities=8% Similarity=-0.007 Sum_probs=20.3
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHh
Q 047363 9 IRNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
-++|.|.|.+|+|||+++.++...
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CCcEEEECCCCccHHHHHHHHHHh
Confidence 367999999999999999887543
No 461
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=80.37 E-value=0.68 Score=53.24 Aligned_cols=23 Identities=9% Similarity=-0.018 Sum_probs=20.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 047363 10 RNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
.-+.|.|.+|+|||||+-.+...
T Consensus 243 ~l~li~G~pG~GKT~lal~~a~~ 265 (503)
T 1q57_A 243 EVIMVTSGSGMVMSTFVRQQALQ 265 (503)
T ss_dssp CEEEEEESSCHHHHHHHHHHHHH
T ss_pred eEEEEeecCCCCchHHHHHHHHH
Confidence 45789999999999999998876
No 462
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=80.05 E-value=0.93 Score=45.15 Aligned_cols=22 Identities=27% Similarity=0.107 Sum_probs=19.8
Q ss_pred eEEEEEeCCCCcHHHHHHHHHH
Q 047363 10 RNISILAHVDHGKTTLADHLIA 31 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~ 31 (876)
..++|+|++|+|||||+..|..
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999976
No 463
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=80.03 E-value=3.3 Score=44.60 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=22.6
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHh
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
..+.|.+.|++|+|||+|+.++...
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCceEEEECCCCccHHHHHHHHHHH
Confidence 3478999999999999999999877
No 464
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=79.66 E-value=1.1 Score=46.32 Aligned_cols=24 Identities=17% Similarity=0.216 Sum_probs=21.7
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHh
Q 047363 9 IRNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
...|+|.|++|+||||++..|...
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999876
No 465
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=79.60 E-value=0.99 Score=50.12 Aligned_cols=24 Identities=38% Similarity=0.403 Sum_probs=21.7
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHh
Q 047363 9 IRNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
-+.|+|+|++|+|||||+..|.+.
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 368999999999999999999876
No 466
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=79.27 E-value=1.8 Score=47.47 Aligned_cols=35 Identities=11% Similarity=-0.020 Sum_probs=29.4
Q ss_pred CeEEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCC
Q 047363 73 DYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVE 109 (876)
Q Consensus 73 ~~~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~e 109 (876)
.|.+.|||||... ......++..||.+|+|+.+..
T Consensus 153 ~yD~VIID~pP~l--~~~~~~aL~~aD~viip~~~~~ 187 (361)
T 3pg5_A 153 RYDVIFFDVGPSL--GPFNRTVLLGCDAFVTPTATDL 187 (361)
T ss_dssp CCSEEEEECCSCC--SHHHHHHHTTCSEEEEEECCSH
T ss_pred CCCEEEEECCCCc--CHHHHHHHHHCCEEEEEecCCh
Confidence 6899999999865 4567788899999999998864
No 467
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=78.95 E-value=0.96 Score=51.85 Aligned_cols=23 Identities=17% Similarity=0.170 Sum_probs=21.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 047363 10 RNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
..++|+|+.|+|||||++.|.+.
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcC
Confidence 57899999999999999999875
No 468
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=78.90 E-value=1.2 Score=48.86 Aligned_cols=22 Identities=32% Similarity=0.397 Sum_probs=20.7
Q ss_pred EEEEEeCCCCcHHHHHHHHHHh
Q 047363 11 NISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
.++|+|+.|+|||||++.|.+.
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999887
No 469
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=78.82 E-value=1.1 Score=45.29 Aligned_cols=23 Identities=17% Similarity=0.307 Sum_probs=20.9
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 047363 10 RNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
..++|+|++|+|||||+..|...
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 46899999999999999999875
No 470
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=78.80 E-value=1.1 Score=47.27 Aligned_cols=23 Identities=30% Similarity=0.362 Sum_probs=20.9
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 047363 10 RNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
+.|.|.|.+|+||||++..|...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999874
No 471
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=78.78 E-value=7.2 Score=43.95 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=22.7
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHh
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
..+.|.+.|++|+|||+|+.++...
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~ 190 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATE 190 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3488999999999999999999877
No 472
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=78.07 E-value=1.3 Score=48.49 Aligned_cols=23 Identities=26% Similarity=0.228 Sum_probs=21.6
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 047363 10 RNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
+.|+|+|++|+|||||+..|...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 57999999999999999999887
No 473
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=77.90 E-value=1.1 Score=49.28 Aligned_cols=22 Identities=18% Similarity=0.152 Sum_probs=19.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHHh
Q 047363 11 NISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 11 nI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
-++|+|+.|+|||||++++...
T Consensus 25 ~~~i~G~NGaGKTTll~ai~~a 46 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAISFA 46 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999865
No 474
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=77.49 E-value=1.4 Score=46.28 Aligned_cols=23 Identities=26% Similarity=0.212 Sum_probs=20.8
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 047363 10 RNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
..++|+|++|+|||||+..|...
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 56899999999999999999865
No 475
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=77.49 E-value=4.3 Score=44.02 Aligned_cols=21 Identities=5% Similarity=0.123 Sum_probs=18.6
Q ss_pred EEEEeCCCCcHHHHHHHHHHh
Q 047363 12 ISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 12 I~IvG~~~~GKTTL~~~Ll~~ 32 (876)
+-|.|++|+|||||+-.++..
T Consensus 31 teI~G~pGsGKTtL~Lq~~~~ 51 (333)
T 3io5_A 31 LILAGPSKSFKSNFGLTMVSS 51 (333)
T ss_dssp EEEEESSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999998888765
No 476
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=77.39 E-value=2 Score=45.61 Aligned_cols=26 Identities=12% Similarity=0.120 Sum_probs=22.6
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHh
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
...+.+.+.|++|+|||+|+.++...
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34577888899999999999999887
No 477
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=77.34 E-value=2 Score=47.79 Aligned_cols=64 Identities=20% Similarity=0.163 Sum_probs=41.0
Q ss_pred CeEEEEEcCCCCccchHHHHHHHHhcCeEEEEEcCCCccc-------cchHHHHHHhhhhcCC-----cEEEEecccc
Q 047363 73 DYAINLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVH-------IQTHAVLRQSWIEKLT-----PCLVLNKIDR 138 (876)
Q Consensus 73 ~~~inlIDTPGh~dF~~e~~~al~~aDgaIlVvDa~egv~-------~~t~~~l~~~~~~~ip-----~ilviNKiD~ 138 (876)
.|.+.|||||+... ..+..++..+|++|+|+.+..-.. .....+++.+.+.+.+ ++.++|+.|.
T Consensus 247 ~yD~VIID~pP~~~--~~~~~al~~aD~vliv~~p~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~l~giv~vl~~~~~ 322 (403)
T 3ez9_A 247 DYDFIFIDTGPHLD--PFLLNGLAASDLLLTPTPPAQVDFHSTLKYLTRLPEMLEQLEEEGVEPRLSASIGFMSKMTG 322 (403)
T ss_dssp GCSEEEEEECSSCS--HHHHHHHHHCSEEEEEECSSHHHHHHHHHHHHTHHHHHHHHHHTTCCCCCCEEEEEECC---
T ss_pred cCCEEEEECCCCcc--HHHHHHHHHCCEEEEEecCchhhHHHHHHHHHHHHHHHHHHHhcCCCCceeEEEEEEeccCC
Confidence 58899999999775 567788899999999998742211 1223344445544433 2458899874
No 478
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=77.32 E-value=1.4 Score=48.07 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=21.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 047363 10 RNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
+.|+|+|+.|+|||||...|...
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999876
No 479
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=77.12 E-value=1.7 Score=47.89 Aligned_cols=26 Identities=19% Similarity=0.262 Sum_probs=23.0
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHh
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
..+++|+++|+.|+||||+...|...
T Consensus 22 g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 22 NYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 35689999999999999999988776
No 480
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=76.80 E-value=1.4 Score=49.77 Aligned_cols=23 Identities=17% Similarity=0.287 Sum_probs=21.0
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 047363 10 RNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
-.++|+|+.|+|||||++.|.+.
T Consensus 158 q~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 158 QRMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 35899999999999999999887
No 481
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=76.79 E-value=1.5 Score=43.59 Aligned_cols=23 Identities=22% Similarity=0.187 Sum_probs=20.8
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 047363 10 RNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
+.+.|.|++|+|||||+..+...
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999876
No 482
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=76.77 E-value=1.6 Score=47.45 Aligned_cols=23 Identities=35% Similarity=0.351 Sum_probs=21.6
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 047363 10 RNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
+.|+|+|++|+|||||...|...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999887
No 483
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=76.77 E-value=1.8 Score=44.35 Aligned_cols=24 Identities=29% Similarity=0.407 Sum_probs=21.7
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHh
Q 047363 9 IRNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
-+.|+|.|..|+||||+++.|...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 367999999999999999999877
No 484
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=76.62 E-value=1.9 Score=45.46 Aligned_cols=26 Identities=23% Similarity=0.240 Sum_probs=22.7
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHh
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
....++.|.|++|+|||+|+.++...
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 44578999999999999999988766
No 485
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=76.60 E-value=8.8 Score=42.19 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=22.2
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHh
Q 047363 9 IRNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
.++|.|.|++|+|||+|+.++...
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHh
Confidence 479999999999999999999776
No 486
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=76.43 E-value=0.79 Score=48.90 Aligned_cols=25 Identities=20% Similarity=0.179 Sum_probs=18.8
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHh
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
+.+.|+|.|.+|+||||+++.|...
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999999765
No 487
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=76.42 E-value=1.5 Score=45.10 Aligned_cols=26 Identities=23% Similarity=0.265 Sum_probs=22.8
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHh
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
...++|.+.|++|+|||+|+.++...
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999999876
No 488
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=76.23 E-value=7.8 Score=46.70 Aligned_cols=92 Identities=24% Similarity=0.277 Sum_probs=50.7
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHhhCCCCcccccCCceeeccChhhhhhcceeeeeeEEEEEEcCeEEEEE-cCCCCccc
Q 047363 9 IRNISILAHVDHGKTTLADHLIAATGGGLLHPKLAGKLRFMDYLDEEQRRAITMKSSSIALHYKDYAINLI-DSPGHMDF 87 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~t~~g~i~~~~~g~~~~~d~~~~E~~rgiti~~~~i~~~~~~~~inlI-DTPGh~dF 87 (876)
+.++.+.|++|+|||+++.+|... .+. .+...+.... ....++ . .++ ..||.+.+
T Consensus 488 ~~~~ll~G~~GtGKT~la~~la~~--l~~-------~~~~i~~s~~--~~~~~~----------~---~l~g~~~g~~g~ 543 (758)
T 1r6b_X 488 VGSFLFAGPTGVGKTEVTVQLSKA--LGI-------ELLRFDMSEY--MERHTV----------S---RLIGAPPGYVGF 543 (758)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHH--HTC-------EEEEEEGGGC--SSSSCC----------S---SSCCCCSCSHHH
T ss_pred ceEEEEECCCCCcHHHHHHHHHHH--hcC-------CEEEEechhh--cchhhH----------h---hhcCCCCCCcCc
Confidence 458999999999999999999877 220 1111110000 000000 0 001 12454332
Q ss_pred h--HHHHHHHHhcCeEEEEEcCCCccccchHHHHHHhhh
Q 047363 88 C--SEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQSWI 124 (876)
Q Consensus 88 ~--~e~~~al~~aDgaIlVvDa~egv~~~t~~~l~~~~~ 124 (876)
. .....+++.+.+.|+++|=.+.........+.+...
T Consensus 544 ~~~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le 582 (758)
T 1r6b_X 544 DQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMD 582 (758)
T ss_dssp HHTTHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHH
T ss_pred cccchHHHHHHhCCCcEEEEeCccccCHHHHHHHHHHhc
Confidence 1 234567777888899999877665555555555443
No 489
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=76.12 E-value=1.1 Score=52.61 Aligned_cols=23 Identities=17% Similarity=0.420 Sum_probs=19.9
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 047363 10 RNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
..++|+|+.|+|||||++.|.+.
T Consensus 370 ~~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 370 KTVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp CEEEEEECTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhhc
Confidence 45899999999999999999543
No 490
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=75.95 E-value=6.9 Score=44.26 Aligned_cols=25 Identities=24% Similarity=0.351 Sum_probs=22.5
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHh
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
++.++.+.|++|+|||||+..+...
T Consensus 49 ~~~~vLL~GppGtGKTtlAr~ia~~ 73 (447)
T 3pvs_A 49 HLHSMILWGPPGTGKTTLAEVIARY 73 (447)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHH
Confidence 3478999999999999999999877
No 491
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=75.95 E-value=6.7 Score=38.54 Aligned_cols=39 Identities=13% Similarity=0.049 Sum_probs=25.8
Q ss_pred CeEEEEEcCCCccccchHHHHHHhhhhcCCcEEEEeccc
Q 047363 99 DGALVLVDAVEGVHIQTHAVLRQSWIEKLTPCLVLNKID 137 (876)
Q Consensus 99 DgaIlVvDa~egv~~~t~~~l~~~~~~~ip~ilviNKiD 137 (876)
+.-++++|=..-+.......++.+...++++++.....|
T Consensus 76 ~~dvviIDE~Q~~~~~~~~~l~~l~~~~~~Vi~~Gl~~~ 114 (184)
T 2orw_A 76 DTRGVFIDEVQFFNPSLFEVVKDLLDRGIDVFCAGLDLT 114 (184)
T ss_dssp TEEEEEECCGGGSCTTHHHHHHHHHHTTCEEEEEEESBC
T ss_pred CCCEEEEECcccCCHHHHHHHHHHHHCCCCEEEEeeccc
Confidence 466888997665533344445544455889888887666
No 492
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=75.89 E-value=1.2 Score=52.31 Aligned_cols=23 Identities=17% Similarity=0.433 Sum_probs=20.3
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 047363 10 RNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
..++|+|+.|+|||||++.|.+.
T Consensus 370 ~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 370 KTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999654
No 493
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=75.85 E-value=0.96 Score=47.07 Aligned_cols=26 Identities=31% Similarity=0.482 Sum_probs=22.2
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHh
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
.+.+.|+|.|..|+||||+++.|...
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHh
Confidence 35678999999999999999988655
No 494
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=75.63 E-value=1.7 Score=45.39 Aligned_cols=26 Identities=23% Similarity=0.272 Sum_probs=23.0
Q ss_pred CCceEEEEEeCCCCcHHHHHHHHHHh
Q 047363 7 RKIRNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 7 ~~irnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
...+++.|.|++|+|||+|+.++...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 34578999999999999999999877
No 495
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=75.58 E-value=1.5 Score=47.59 Aligned_cols=24 Identities=21% Similarity=0.230 Sum_probs=21.8
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHh
Q 047363 9 IRNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
.+++.|.|++|+|||||+..+...
T Consensus 44 ~~~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 44 YPRATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999876
No 496
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=75.39 E-value=2 Score=46.40 Aligned_cols=24 Identities=29% Similarity=0.304 Sum_probs=21.7
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHh
Q 047363 9 IRNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
-+-|+|+|++|+|||||+..|...
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHHh
Confidence 356899999999999999999887
No 497
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=75.34 E-value=1.3 Score=51.62 Aligned_cols=23 Identities=22% Similarity=0.247 Sum_probs=20.4
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 047363 10 RNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
..++|+|+.|+|||||++.|.+.
T Consensus 48 e~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 48 MVVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999654
No 498
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=75.10 E-value=1.6 Score=45.99 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=22.2
Q ss_pred ceEEEEEeCCCCcHHHHHHHHHHh
Q 047363 9 IRNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 9 irnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
.+.|.+.|++|+|||||+.++...
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 578999999999999999999877
No 499
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=74.65 E-value=1.3 Score=44.93 Aligned_cols=23 Identities=13% Similarity=0.187 Sum_probs=21.2
Q ss_pred eEEEEEeCCCCcHHHHHHHHHHh
Q 047363 10 RNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 10 rnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
+++.+.|++|+||||++.+|...
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999877
No 500
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=74.47 E-value=1.7 Score=46.20 Aligned_cols=25 Identities=20% Similarity=0.240 Sum_probs=22.5
Q ss_pred CceEEEEEeCCCCcHHHHHHHHHHh
Q 047363 8 KIRNISILAHVDHGKTTLADHLIAA 32 (876)
Q Consensus 8 ~irnI~IvG~~~~GKTTL~~~Ll~~ 32 (876)
.-+.|.+.|++|+|||+|+.++...
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCcCHHHHHHHHHHH
Confidence 3478999999999999999999877
Done!