BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 047365
         (243 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2J7T|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10
           Bound To Su11274
 pdb|4AOT|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10
           (Lok) Bound To Gw830263a
 pdb|4AOT|B Chain B, Crystal Structure Of Human Serine Threonine Kinase-10
           (Lok) Bound To Gw830263a
 pdb|4EQU|A Chain A, Human Stk-10 (Lok) Kinase Domain In Dfg-Out Conformation
           With Inhibitor Dsa-7
 pdb|4EQU|B Chain B, Human Stk-10 (Lok) Kinase Domain In Dfg-Out Conformation
           With Inhibitor Dsa-7
          Length = 302

 Score = 28.1 bits (61), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 12/72 (16%)

Query: 154 YGLLIKDLNVAIPNVLGFIFGVL-QMILYVIYKNPNK--------KIVEQTKLQELSEHV 204
           Y  + +DL+   PN +  I G L       +YK  NK        K++E    +EL +++
Sbjct: 8   YEHVRRDLD---PNEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYI 64

Query: 205 VDVVKLSTMRHP 216
           V++  L+T  HP
Sbjct: 65  VEIEILATCDHP 76


>pdb|2YIU|A Chain A, X-Ray Structure Of The Dimeric Cytochrome Bc1 Complex From
           The Soil Bacterium Paracoccus Denitrificans At 2.7
           Angstrom Resolution
 pdb|2YIU|D Chain D, X-Ray Structure Of The Dimeric Cytochrome Bc1 Complex From
           The Soil Bacterium Paracoccus Denitrificans At 2.7
           Angstrom Resolution
          Length = 450

 Score = 27.7 bits (60), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 5/72 (6%)

Query: 75  FYAPKKVRIQTVKLLLLLNIFGFGAIREKILGYICMTFALSVFA-APLFIVRKVIKTKSV 133
           FYA  +     V +++L+N   FG I  K  G I M  A+ V A  P     +V   +S 
Sbjct: 301 FYAILRAFTADVWVVMLVNWLSFGIIDAKFFGVIAMFGAILVMALVPWLDTSRV---RSG 357

Query: 134 EYMP-FTLSFFL 144
           +Y P F   F+L
Sbjct: 358 QYRPLFKWWFWL 369


>pdb|4BC6|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10
           Bound To Novel Bosutinib Isoform 1, Previously Thought
           To Be Bosutinib
          Length = 293

 Score = 27.7 bits (60), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 12/67 (17%)

Query: 159 KDLNVAIPNVLGFIFGVL-QMILYVIYKNPNK--------KIVEQTKLQELSEHVVDVVK 209
           +DL+   PN +  I G L       +YK  NK        K++E    +EL +++V++  
Sbjct: 5   RDLD---PNEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEI 61

Query: 210 LSTMRHP 216
           L+T  HP
Sbjct: 62  LATCDHP 68


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.332    0.144    0.434 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,092,893
Number of Sequences: 62578
Number of extensions: 212185
Number of successful extensions: 465
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 464
Number of HSP's gapped (non-prelim): 3
length of query: 243
length of database: 14,973,337
effective HSP length: 96
effective length of query: 147
effective length of database: 8,965,849
effective search space: 1317979803
effective search space used: 1317979803
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 50 (23.9 bits)