Query 047365
Match_columns 243
No_of_seqs 224 out of 1433
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 10:24:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047365.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047365hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1623 Multitransmembrane pro 100.0 4E-46 8.6E-51 323.9 11.0 215 1-218 14-239 (243)
2 PF03083 MtN3_slv: Sugar efflu 99.8 4.5E-22 9.7E-27 148.5 4.2 86 104-189 2-87 (87)
3 PF03083 MtN3_slv: Sugar efflu 99.8 2.4E-20 5.3E-25 139.1 4.5 79 2-81 9-87 (87)
4 KOG1623 Multitransmembrane pro 99.5 3.9E-14 8.4E-19 123.9 6.1 88 102-189 6-94 (243)
5 COG4095 Uncharacterized conser 99.3 8.3E-13 1.8E-17 97.5 3.5 82 102-186 5-86 (89)
6 COG4095 Uncharacterized conser 99.1 1.1E-10 2.5E-15 86.2 5.5 74 3-77 12-85 (89)
7 TIGR00951 2A43 Lysosomal Cysti 98.9 1.8E-08 3.8E-13 87.7 13.3 180 5-184 13-219 (220)
8 KOG3211 Predicted endoplasmic 98.6 1.4E-07 3.1E-12 80.3 7.4 174 9-189 44-227 (230)
9 PF04193 PQ-loop: PQ loop repe 98.1 2.8E-06 6.2E-11 58.8 3.9 56 103-161 3-58 (61)
10 PF04193 PQ-loop: PQ loop repe 98.0 5.3E-06 1.2E-10 57.4 3.4 50 3-52 9-58 (61)
11 KOG2913 Predicted membrane pro 97.4 0.00059 1.3E-08 60.9 7.9 181 4-188 17-249 (260)
12 TIGR00951 2A43 Lysosomal Cysti 96.4 0.0072 1.6E-07 52.6 5.8 50 102-154 4-53 (220)
13 smart00679 CTNS Repeated motif 96.2 0.0042 9.2E-08 37.2 2.5 28 10-37 2-29 (32)
14 PHA02246 hypothetical protein 95.7 0.14 2.9E-06 42.4 9.9 158 5-173 14-178 (192)
15 smart00679 CTNS Repeated motif 94.8 0.0078 1.7E-07 36.0 -0.1 29 119-147 2-30 (32)
16 PF03650 MPC: Uncharacterised 93.8 0.016 3.4E-07 45.8 -0.2 62 130-191 39-102 (119)
17 PF10688 Imp-YgjV: Bacterial i 92.5 1.3 2.9E-05 36.7 9.4 120 33-178 30-154 (163)
18 KOG1589 Uncharacterized conser 89.7 0.067 1.4E-06 41.4 -1.0 60 130-189 43-104 (118)
19 PRK01021 lpxB lipid-A-disaccha 88.1 2.7 5.9E-05 42.0 8.7 152 20-179 32-213 (608)
20 PF03650 MPC: Uncharacterised 85.6 0.44 9.5E-06 37.6 1.4 60 21-81 39-100 (119)
21 KOG3145 Cystine transporter Cy 83.7 8.3 0.00018 35.4 8.8 176 9-190 137-360 (372)
22 PHA02246 hypothetical protein 82.9 5.9 0.00013 32.9 6.9 61 5-65 118-178 (192)
23 KOG1589 Uncharacterized conser 81.1 1.1 2.3E-05 34.9 1.8 57 21-78 43-101 (118)
24 KOG3211 Predicted endoplasmic 81.0 2.6 5.6E-05 36.5 4.4 75 6-80 152-226 (230)
25 KOG2913 Predicted membrane pro 79.8 2.8 6.1E-05 37.5 4.4 47 114-160 18-64 (260)
26 PF10688 Imp-YgjV: Bacterial i 67.9 5.8 0.00013 32.9 3.2 37 33-70 118-154 (163)
27 PF07578 LAB_N: Lipid A Biosyn 66.1 4.6 9.9E-05 29.1 1.9 42 134-175 26-67 (72)
28 PF07578 LAB_N: Lipid A Biosyn 55.6 17 0.00038 26.1 3.4 49 14-65 16-65 (72)
29 COG3952 Predicted membrane pro 53.6 7.2 0.00016 30.2 1.2 56 128-183 48-103 (113)
30 COG5196 ERD2 ER lumen protein 51.7 34 0.00074 28.9 5.0 64 118-181 130-193 (214)
31 KOG3106 ER lumen protein retai 46.9 22 0.00048 30.5 3.2 59 118-181 129-191 (212)
32 KOG2489 Transmembrane protein 46.9 81 0.0018 31.1 7.3 173 8-191 333-556 (592)
33 PF15102 TMEM154: TMEM154 prot 34.1 48 0.0011 27.1 3.2 30 162-191 60-89 (146)
34 COG3952 Predicted membrane pro 30.0 88 0.0019 24.3 3.8 47 29-76 57-104 (113)
35 PF06946 Phage_holin_5: Phage 27.1 1.6E+02 0.0035 22.2 4.8 73 6-79 11-84 (93)
36 PHA03049 IMV membrane protein; 24.2 34 0.00073 24.3 0.6 23 169-191 8-30 (68)
37 PF05297 Herpes_LMP1: Herpesvi 23.9 25 0.00054 32.2 -0.1 88 101-191 103-191 (381)
38 PF08693 SKG6: Transmembrane a 20.8 1.1E+02 0.0023 19.6 2.3 20 169-188 21-40 (40)
No 1
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=100.00 E-value=4e-46 Score=323.91 Aligned_cols=215 Identities=49% Similarity=0.845 Sum_probs=181.1
Q ss_pred CeeehhHhhccHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHhhcccc-CceeeeehhhHHHHHHHHHHHhhhhccCc
Q 047365 1 NITSFLVCLAPMPTFYKIYKKKSTEGFQSVPYVISLFSAMIWIYYALLKQ-NAIFLMTINTFCCVMQTIYIAVYVFYAPK 79 (243)
Q Consensus 1 ~i~s~~~~lSplp~i~~I~k~kst~~~s~~p~v~~~~n~~lW~~YG~l~~-d~~~v~~~N~~G~~l~~~y~~v~~~y~~~ 79 (243)
|++++++|++|+|+++||+|+||+|++|+.||+++++||++|+.||.+++ |. .++.+|++|++++++|+..|+.|+++
T Consensus 14 ~~is~~~fl~pv~tf~~I~KkkS~e~~s~~Pfl~~ll~~~lWl~YG~~~~~d~-llitIN~~G~~ie~~Yi~~f~~ya~~ 92 (243)
T KOG1623|consen 14 NIISFGVFLSPVPTFRRIRKKKSVEGFSSLPFLMGLLSCSLWLYYGLLKVHDY-LLITINGIGLVIETVYISIFLYYAPK 92 (243)
T ss_pred HHHhHHHhhcCchhHHHhhcccCcCCCCCcCcHHHHHHHHHHHHhhhhccCce-EEEEEehhcHHHHHHHHHHHheecCc
Confidence 67899999999999999999999999999999999999999999999888 66 59999999999999999999999998
Q ss_pred chhHHHHHH---HHHHHHHhhhHh-------HHHHHHHHHHHHHHHHhhccccccceeeecCcccccChhHHHHHHhhhH
Q 047365 80 KVRIQTVKL---LLLLNIFGFGAI-------REKILGYICMTFALSVFAAPLFIVRKVIKTKSVEYMPFTLSFFLTIGAV 149 (243)
Q Consensus 80 ~~~~~~~~~---~~~~~v~~~~~~-------~~~~lG~ia~~~~i~~f~Spl~~i~~virtkst~~ls~~~~~~~~~n~~ 149 (243)
|+....... ........+.+. |.+.+|.+|.+++++||+||+..+++++|+||+|.||++++++.++++.
T Consensus 93 k~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~lG~vc~~~nI~~~~sPL~~m~~VIktkSvE~mPf~Ls~a~fl~a~ 172 (243)
T KOG1623|consen 93 KKTVKIVLALVLGVIGLIILLTLLLFHDPERRVSVLGIVCAVFNISMFAAPLSVIRKVIKTKSVEYMPFPLSFALFLVAV 172 (243)
T ss_pred hheeEeeehHHHHHHHHHHHHHHHhcCCcceeeeeeehhhhhhhHHhhhccHHhhhhheecCceeeechHHHHHHHHHHH
Confidence 873221111 111111222222 5789999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcccCeeeEechhHHHHHHHHhhhheEEEeCCCccccchhhhhccccceeEEEEecCCCCCCC
Q 047365 150 AWFFYGLLIKDLNVAIPNVLGFIFGVLQMILYVIYKNPNKKIVEQTKLQELSEHVVDVVKLSTMRHPGP 218 (243)
Q Consensus 150 ~W~~YG~l~~d~~i~~~N~~G~~l~~~ql~l~~~y~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~ 218 (243)
.|++||++++|.++.+||.+|..++++|+.+|++|++++.+. ..+.++.+|+++|..+.++...+|.
T Consensus 173 ~W~lYGlli~D~~IaipN~iG~~l~~~QL~Ly~~y~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (243)
T KOG1623|consen 173 QWLLYGLLIKDFFIAIPNVLGFLLGLIQLILYFKYPKTTEKI--VPPKQNKKDVVVDEVLLGTIVVDEP 239 (243)
T ss_pred HHHHHHHHhcCeEEEcccHHHHHHHHHHHHHhhhcCCCcccc--cccccccCCccccccccCCcccCCc
Confidence 999999999999999999999999999999999998877443 2223345667777777655554544
No 2
>PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) []. Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This signature maps to transmembrane helices which are found in two copies in most members of the family.; GO: 0016021 integral to membrane
Probab=99.85 E-value=4.5e-22 Score=148.53 Aligned_cols=86 Identities=33% Similarity=0.693 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHhhccccccceeeecCcccccChhHHHHHHhhhHHHHHhhhcccCeeeEechhHHHHHHHHhhhheEE
Q 047365 104 ILGYICMTFALSVFAAPLFIVRKVIKTKSVEYMPFTLSFFLTIGAVAWFFYGLLIKDLNVAIPNVLGFIFGVLQMILYVI 183 (243)
Q Consensus 104 ~lG~ia~~~~i~~f~Spl~~i~~virtkst~~ls~~~~~~~~~n~~~W~~YG~l~~d~~i~~~N~~G~~l~~~ql~l~~~ 183 (243)
++|.+|.+.++++++||++++++++|+||++++|+.|+++.++|+.+|+.||++++|++++++|.+|.+++.+|+.+|++
T Consensus 2 ~lg~~~~~~~i~~~~spl~~i~~v~k~ks~~~~~~~~~~~~~~~~~~W~~YG~l~~d~~i~~~N~~g~~~~~~~~~~~~~ 81 (87)
T PF03083_consen 2 VLGILASVSSIIMFLSPLPQIRQVIKTKSTGSVSFPPFLAMFFNCVLWLIYGILINDWPIIVPNVFGLVLSIIYLVVYYI 81 (87)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHhCCCCCccceehhHHHhhhccHhhhhhhhcCCeeEEeeHHHHHHHHHHHHhheEE
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCc
Q 047365 184 YKNPNK 189 (243)
Q Consensus 184 y~~~~~ 189 (243)
|+++|+
T Consensus 82 y~~~~~ 87 (87)
T PF03083_consen 82 YPSKKK 87 (87)
T ss_pred eCCCCC
Confidence 998875
No 3
>PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) []. Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This signature maps to transmembrane helices which are found in two copies in most members of the family.; GO: 0016021 integral to membrane
Probab=99.80 E-value=2.4e-20 Score=139.13 Aligned_cols=79 Identities=29% Similarity=0.637 Sum_probs=75.8
Q ss_pred eeehhHhhccHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHhhccccCceeeeehhhHHHHHHHHHHHhhhhccCcch
Q 047365 2 ITSFLVCLAPMPTFYKIYKKKSTEGFQSVPYVISLFSAMIWIYYALLKQNAIFLMTINTFCCVMQTIYIAVYVFYAPKKV 81 (243)
Q Consensus 2 i~s~~~~lSplp~i~~I~k~kst~~~s~~p~v~~~~n~~lW~~YG~l~~d~~~v~~~N~~G~~l~~~y~~v~~~y~~~~~ 81 (243)
+.++++++||+|+++|++|+||+|++++.|++..++||.+|+.||++.+|+ +++.+|++|.+++.+|+.+|++|+++|+
T Consensus 9 ~~~i~~~~spl~~i~~v~k~ks~~~~~~~~~~~~~~~~~~W~~YG~l~~d~-~i~~~N~~g~~~~~~~~~~~~~y~~~~~ 87 (87)
T PF03083_consen 9 VSSIIMFLSPLPQIRQVIKTKSTGSVSFPPFLAMFFNCVLWLIYGILINDW-PIIVPNVFGLVLSIIYLVVYYIYPSKKK 87 (87)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCccceehhHHHhhhccHhhhhhhhcCCe-eEEeeHHHHHHHHHHHHhheEEeCCCCC
Confidence 568899999999999999999999999999999999999999999999999 5999999999999999999999998874
No 4
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=99.48 E-value=3.9e-14 Score=123.85 Aligned_cols=88 Identities=23% Similarity=0.413 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHHHhhccccccceeeecCcccccChhHHHHHHhhhHHHHHhhhccc-CeeeEechhHHHHHHHHhhhh
Q 047365 102 EKILGYICMTFALSVFAAPLFIVRKVIKTKSVEYMPFTLSFFLTIGAVAWFFYGLLIK-DLNVAIPNVLGFIFGVLQMIL 180 (243)
Q Consensus 102 ~~~lG~ia~~~~i~~f~Spl~~i~~virtkst~~ls~~~~~~~~~n~~~W~~YG~l~~-d~~i~~~N~~G~~l~~~ql~l 180 (243)
..++|..|.++++++|.+|+|+++|++|+||+|+.|..|+++++++|.+|+.||...+ |..++..|.+|.++..+++..
T Consensus 6 ~~l~~i~~~~is~~~fl~pv~tf~~I~KkkS~e~~s~~Pfl~~ll~~~lWl~YG~~~~~d~llitIN~~G~~ie~~Yi~~ 85 (243)
T KOG1623|consen 6 LFLFGILGNIISFGVFLSPVPTFRRIRKKKSVEGFSSLPFLMGLLSCSLWLYYGLLKVHDYLLITINGIGLVIETVYISI 85 (243)
T ss_pred HHHHHHHHHHHhHHHhhcCchhHHHhhcccCcCCCCCcCcHHHHHHHHHHHHhhhhccCceEEEEEehhcHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999999999999999887 999999999999999999999
Q ss_pred eEEEeCCCc
Q 047365 181 YVIYKNPNK 189 (243)
Q Consensus 181 ~~~y~~~~~ 189 (243)
|+.|.++|+
T Consensus 86 f~~ya~~k~ 94 (243)
T KOG1623|consen 86 FLYYAPKKK 94 (243)
T ss_pred HheecCchh
Confidence 999998887
No 5
>COG4095 Uncharacterized conserved protein [Function unknown]
Probab=99.33 E-value=8.3e-13 Score=97.50 Aligned_cols=82 Identities=28% Similarity=0.545 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHHHhhccccccceeeecCcccccChhHHHHHHhhhHHHHHhhhcccCeeeEechhHHHHHHHHhhhhe
Q 047365 102 EKILGYICMTFALSVFAAPLFIVRKVIKTKSVEYMPFTLSFFLTIGAVAWFFYGLLIKDLNVAIPNVLGFIFGVLQMILY 181 (243)
Q Consensus 102 ~~~lG~ia~~~~i~~f~Spl~~i~~virtkst~~ls~~~~~~~~~n~~~W~~YG~l~~d~~i~~~N~~G~~l~~~ql~l~ 181 (243)
.++.|++|+.++.++| +||..+++|+||++++++.++.....+.++|++||++++|.++...|.+++.++.+-+...
T Consensus 5 ~~viG~ia~ilttf~f---lPQ~iki~ktK~t~~Isl~~fii~~ia~~lwliygILi~~lPii~aN~i~~il~liIl~~k 81 (89)
T COG4095 5 IEVIGTIAGILTTFAF---LPQLIKIIKTKNTASISLPMFIILNIALFLWLIYGILINDLPIIIANIISFILSLIILFYK 81 (89)
T ss_pred hhhHHHHHHHHHHHHH---HHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHHH
Confidence 3578999999988888 9999999999999999999999999999999999999999999999999999999887766
Q ss_pred EEEeC
Q 047365 182 VIYKN 186 (243)
Q Consensus 182 ~~y~~ 186 (243)
..|..
T Consensus 82 I~~~~ 86 (89)
T COG4095 82 IKYIL 86 (89)
T ss_pred HHHHH
Confidence 66543
No 6
>COG4095 Uncharacterized conserved protein [Function unknown]
Probab=99.11 E-value=1.1e-10 Score=86.22 Aligned_cols=74 Identities=20% Similarity=0.401 Sum_probs=68.2
Q ss_pred eehhHhhccHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHhhccccCceeeeehhhHHHHHHHHHHHhhhhcc
Q 047365 3 TSFLVCLAPMPTFYKIYKKKSTEGFQSVPYVISLFSAMIWIYYALLKQNAIFLMTINTFCCVMQTIYIAVYVFYA 77 (243)
Q Consensus 3 ~s~~~~lSplp~i~~I~k~kst~~~s~~p~v~~~~n~~lW~~YG~l~~d~~~v~~~N~~G~~l~~~y~~v~~~y~ 77 (243)
.++...++.+||..+++|+|+++++|..+|+....++.+|+.||++.+|. |++..|.++..++.+-++...+|-
T Consensus 12 a~ilttf~flPQ~iki~ktK~t~~Isl~~fii~~ia~~lwliygILi~~l-Pii~aN~i~~il~liIl~~kI~~~ 85 (89)
T COG4095 12 AGILTTFAFLPQLIKIIKTKNTASISLPMFIILNIALFLWLIYGILINDL-PIIIANIISFILSLIILFYKIKYI 85 (89)
T ss_pred HHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHHHccC-cchhHHHHHHHHHHHHHHHHHHHH
Confidence 46778889999999999999999999999999999999999999999987 799999999999998887777764
No 7
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=98.94 E-value=1.8e-08 Score=87.73 Aligned_cols=180 Identities=14% Similarity=0.104 Sum_probs=115.0
Q ss_pred hhHhhccHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHh--------hccccCcee--eeehhhHH-----HHHHHHH
Q 047365 5 FLVCLAPMPTFYKIYKKKSTEGFQSVPYVISLFSAMIWIYY--------ALLKQNAIF--LMTINTFC-----CVMQTIY 69 (243)
Q Consensus 5 ~~~~lSplp~i~~I~k~kst~~~s~~p~v~~~~n~~lW~~Y--------G~l~~d~~~--v~~~N~~G-----~~l~~~y 69 (243)
++-.++.+||+++++|+||++++|+..+.....+...|..| ....+-++. -+..|-+- .++..+.
T Consensus 13 ~~~~~~~~PQi~~n~k~ks~~GlS~~~~~l~~~g~~~~~~yn~~~~~~~~~~~~~~~~~~~v~~edl~~ai~~~il~~l~ 92 (220)
T TIGR00951 13 AAWSISFYPQIIKNWRRKSAEGLSFDFVMLNLVGFTAYVIFNFLQLYCWSITNEFPLSSPGVTQNDVFFTLHAILICFIV 92 (220)
T ss_pred HHHHHHHhhHHHHHHhccccCCcCHHHHHHHHHHHHHHHHHHHHHhcchhhhhccccccCCCcHHHHHHHHHHHHHHHHH
Confidence 34567889999999999999999999999999999999999 333222221 01112222 2222222
Q ss_pred HHhhhhccCcchhH-HHHH-HHHHHHHHhh-----hHh----HHHHHHHHHHHHHHHHhhccccccceeeecCcccccCh
Q 047365 70 IAVYVFYAPKKVRI-QTVK-LLLLLNIFGF-----GAI----REKILGYICMTFALSVFAAPLFIVRKVIKTKSVEYMPF 138 (243)
Q Consensus 70 ~~v~~~y~~~~~~~-~~~~-~~~~~~v~~~-----~~~----~~~~lG~ia~~~~i~~f~Spl~~i~~virtkst~~ls~ 138 (243)
..-..+|.+..+|. .... .+.......+ ... -.+.+..+..+--.....+-+||++...|+|||+++|.
T Consensus 93 ~~q~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~iki~is~ikyiPQi~~Ny~~ksT~glSi 172 (220)
T TIGR00951 93 LHQCGDYERGWQRVSNPWILRILVALLACFATLLVALLSPITPLAFVTMLSYIKVAVTLVKYFPQAATNYHNKSTGQLSI 172 (220)
T ss_pred HHHHhhccccccccchhHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCCcCCH
Confidence 22223343332222 1111 1111111111 111 22344444333333444567999999999999999999
Q ss_pred hHHHHHHhhhHHHHHhhhcc-cCeeeEechhHHHHHHHHhhhheEEE
Q 047365 139 TLSFFLTIGAVAWFFYGLLI-KDLNVAIPNVLGFIFGVLQMILYVIY 184 (243)
Q Consensus 139 ~~~~~~~~n~~~W~~YG~l~-~d~~i~~~N~~G~~l~~~ql~l~~~y 184 (243)
......+.++....+..... +|...+....+++.++.+.+...+.|
T Consensus 173 ~~i~Ld~~G~lqri~ts~~~~gd~~~l~~~~~s~~~n~i~~~Q~~~y 219 (220)
T TIGR00951 173 ITVFLDFTGLLQRIFQSVNETGDPLKAGLFVVSSLFNGLFAAQVFFY 219 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999988888754 67888888889999999877766555
No 8
>KOG3211 consensus Predicted endoplasmic reticulum membrane protein Lec35/MPDU1 involved in monosaccharide-P-dolichol utilization [General function prediction only]
Probab=98.59 E-value=1.4e-07 Score=80.28 Aligned_cols=174 Identities=16% Similarity=0.201 Sum_probs=123.1
Q ss_pred hccHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHhhccccCceeeeehhhHHH----HHHH-HHHHhhhhccCcchhH
Q 047365 9 LAPMPTFYKIYKKKSTEGFQSVPYVISLFSAMIWIYYALLKQNAIFLMTINTFCC----VMQT-IYIAVYVFYAPKKVRI 83 (243)
Q Consensus 9 lSplp~i~~I~k~kst~~~s~~p~v~~~~n~~lW~~YG~l~~d~~~v~~~N~~G~----~l~~-~y~~v~~~y~~~~~~~ 83 (243)
+-.+||+.+|+.+||++|+|...+...+++...-+.|.+-++-+| .+.|. .++. +.+...++|+-.-.
T Consensus 44 ~vKlPQI~kI~aakSa~GLSv~s~~LElvgytvtl~Y~~~~g~pF-----ss~gE~~fLl~Q~vili~~if~f~~~~~-- 116 (230)
T KOG3211|consen 44 LVKLPQIMKIRAAKSARGLSVVSLLLELVGYTVTLSYSYTSGYPF-----SSYGEYPFLLLQAVILILCIFHFSGQTV-- 116 (230)
T ss_pred HhhhhHHHHHHhhcccccccHHHHHHHHHHHHheeeehhhcCCCc-----hhHHHHHHHHHHHHHHHHHHHHhcccee--
Confidence 346899999999999999999999999999999999999888665 34443 3333 33333344441110
Q ss_pred HHHHHHHHHHHHhh---hHh-HHHHHHHHHHHHHHHHhhccccccceeeecCcccccChhHHHHHHhhhHHHHHhhhcc-
Q 047365 84 QTVKLLLLLNIFGF---GAI-REKILGYICMTFALSVFAAPLFIVRKVIKTKSVEYMPFTLSFFLTIGAVAWFFYGLLI- 158 (243)
Q Consensus 84 ~~~~~~~~~~v~~~---~~~-~~~~lG~ia~~~~i~~f~Spl~~i~~virtkst~~ls~~~~~~~~~n~~~W~~YG~l~- 158 (243)
...+.+....+... +.. ...++-...+...-..-.|.++|+...+|+|+++.+++...+..+-++....+|.+..
T Consensus 117 ~~v~~l~~~~~v~~~~~sk~~p~~~~~L~~~~~l~i~v~sr~~Qi~~n~~~~~tgqls~it~fLsf~g~lARiftsiq~t 196 (230)
T KOG3211|consen 117 TVVQFLGYIALVVSVLASKALPLWIITLAQNLCLPIVVVSRLLQIQCNYHNRSTGQLSLITVFLSFGGCLARIFTSIQET 196 (230)
T ss_pred ehhhHHHHHHHHHHHHHHhhhhHHHHHHHHhcCchhhhHHHHHHHHHHhcccccchhHHHHHHHHhhhHHHHHHHHHHhc
Confidence 01112211111111 111 2223332222222233478999999999999999999999999999999999999985
Q ss_pred cCeeeEechhHHHHHHHHhhhheEEEeCCCc
Q 047365 159 KDLNVAIPNVLGFIFGVLQMILYVIYKNPNK 189 (243)
Q Consensus 159 ~d~~i~~~N~~G~~l~~~ql~l~~~y~~~~~ 189 (243)
+|+.++..-.+...++....+..+.|++++.
T Consensus 197 ~d~~mll~~v~s~~~Ng~i~aq~l~Y~s~~~ 227 (230)
T KOG3211|consen 197 GDFLMLLRFVISLALNGLITAQVLRYWSTAI 227 (230)
T ss_pred CChhhHHHHHHHHHHhHHHHHHHHHHHhcCC
Confidence 7889988899999999988888888876654
No 9
>PF04193 PQ-loop: PQ loop repeat
Probab=98.13 E-value=2.8e-06 Score=58.78 Aligned_cols=56 Identities=25% Similarity=0.378 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHhhccccccceeeecCcccccChhHHHHHHhhhHHHHHhhhcccCe
Q 047365 103 KILGYICMTFALSVFAAPLFIVRKVIKTKSVEYMPFTLSFFLTIGAVAWFFYGLLIKDL 161 (243)
Q Consensus 103 ~~lG~ia~~~~i~~f~Spl~~i~~virtkst~~ls~~~~~~~~~n~~~W~~YG~l~~d~ 161 (243)
+.+|+++.++... +.+||+.+.+|+||++++|+.+......+..+|+.|++..++.
T Consensus 3 ~~~g~i~~~~~~~---~~lPQi~~~~k~ks~~glS~~~~~l~~~g~~~~~~~~~~~~~~ 58 (61)
T PF04193_consen 3 NILGIISIVLWII---SFLPQIIKNYKRKSTGGLSLWFLLLWLIGSILWVLYSILSNYP 58 (61)
T ss_pred HHHHHHHHHHHHH---HHHhHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4567777655544 5599999999999999999999999999999999999988654
No 10
>PF04193 PQ-loop: PQ loop repeat
Probab=98.01 E-value=5.3e-06 Score=57.38 Aligned_cols=50 Identities=26% Similarity=0.522 Sum_probs=46.0
Q ss_pred eehhHhhccHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHhhccccCc
Q 047365 3 TSFLVCLAPMPTFYKIYKKKSTEGFQSVPYVISLFSAMIWIYYALLKQNA 52 (243)
Q Consensus 3 ~s~~~~lSplp~i~~I~k~kst~~~s~~p~v~~~~n~~lW~~YG~l~~d~ 52 (243)
..++..++.+||+++.+|+||++++|...+.....+..+|+.|+++.+++
T Consensus 9 ~~~~~~~~~lPQi~~~~k~ks~~glS~~~~~l~~~g~~~~~~~~~~~~~~ 58 (61)
T PF04193_consen 9 SIVLWIISFLPQIIKNYKRKSTGGLSLWFLLLWLIGSILWVLYSILSNYP 58 (61)
T ss_pred HHHHHHHHHHhHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 35677889999999999999999999999999999999999999988765
No 11
>KOG2913 consensus Predicted membrane protein [Function unknown]
Probab=97.41 E-value=0.00059 Score=60.87 Aligned_cols=181 Identities=16% Similarity=0.190 Sum_probs=102.8
Q ss_pred ehhHhhccHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHhhccccCceeeeehhhHHHHHHHHHHHhhhhccCcchh-
Q 047365 4 SFLVCLAPMPTFYKIYKKKSTEGFQSVPYVISLFSAMIWIYYALLKQNAIFLMTINTFCCVMQTIYIAVYVFYAPKKVR- 82 (243)
Q Consensus 4 s~~~~lSplp~i~~I~k~kst~~~s~~p~v~~~~n~~lW~~YG~l~~d~~~v~~~N~~G~~l~~~y~~v~~~y~~~~~~- 82 (243)
+++-..+-+||+....|+||.+++|+.+.+.-+.+...=+.|..+.+-. ++...-.+=..++-..+.+...|.+++.+
T Consensus 17 ~~~w~v~~iPqi~~n~r~Ks~~glS~lfl~~Wligdi~nl~g~~l~~~~-~~~~~~~~yy~~~d~~l~~q~~yy~~~~~~ 95 (260)
T KOG2913|consen 17 TVCWCVQLIPQIIENYRRKSTEGLSPLFLLTWLIGDIFNLVGFFLQPLG-STLKVQAVYYTLADSVLFVQCLYYGNIYPR 95 (260)
T ss_pred HHhhhhhhhhHHHHhhhccccCCCCHHHHHHHHHccHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHhcchhccc
Confidence 4455667789999999999999999999988888887777887766533 11221222222222223333333333222
Q ss_pred --------H--HHHH--HHHH------------------------HHHHhhhHh--------H---HHHHHHHHHHHHH-
Q 047365 83 --------I--QTVK--LLLL------------------------LNIFGFGAI--------R---EKILGYICMTFAL- 114 (243)
Q Consensus 83 --------~--~~~~--~~~~------------------------~~v~~~~~~--------~---~~~lG~ia~~~~i- 114 (243)
. .... .... +...+.... . .+.+|.+...++.
T Consensus 96 ~pll~~~s~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~ilG~l~a~ 175 (260)
T KOG2913|consen 96 EPLLPVPSFRSLLGGLEALLILSIKLFSPRFVKWPVVALGFLAIVFLICGAAYESLLRAVRVNGLEIDSLGAILGSLSAL 175 (260)
T ss_pred CccccccchhhhhcchHHHHHHHhhccCcchhhccchhhhhHHHHHHHHHHHhhccccccccchhhhcchHHHHHHHHHH
Confidence 0 0000 0000 000010001 1 2345555444444
Q ss_pred HHhhccccccceeeecCcccccChhHHHHHHhhhHHHHHhhhc---ccCeeeEechhHHHHHHHHhhhheEEEeCCC
Q 047365 115 SVFAAPLFIVRKVIKTKSVEYMPFTLSFFLTIGAVAWFFYGLL---IKDLNVAIPNVLGFIFGVLQMILYVIYKNPN 188 (243)
Q Consensus 115 ~~f~Spl~~i~~virtkst~~ls~~~~~~~~~n~~~W~~YG~l---~~d~~i~~~N~~G~~l~~~ql~l~~~y~~~~ 188 (243)
+-.++++||+...+|.|+++++++.++....+++ +.|+.- ..+.+=..--.-+..+-+.....|+.|++.|
T Consensus 176 ly~~~rIPQI~~n~~~~s~eGls~~~F~~~~~~n---~~y~~s~~~~~n~~w~~~~~~~~~~D~~~~~q~~~~~~~~ 249 (260)
T KOG2913|consen 176 LYLGARIPQIILNHLRKSTEGLSLLAFAFNSLGN---TTYILSSYLVTNLPWLVDSKGTIYLDIFIFLQFFNYRASK 249 (260)
T ss_pred HHcccccchhhhhhccCccchhHHHHHHHHHccc---cccccccccccCCcccccCCcchhHHHHHHHHHHHhhccc
Confidence 4458899999999999999999998886555554 456655 2222222222234455566677778887776
No 12
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=96.39 E-value=0.0072 Score=52.63 Aligned_cols=50 Identities=20% Similarity=0.252 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHhhccccccceeeecCcccccChhHHHHHHhhhHHHHHh
Q 047365 102 EKILGYICMTFALSVFAAPLFIVRKVIKTKSVEYMPFTLSFFLTIGAVAWFFY 154 (243)
Q Consensus 102 ~~~lG~ia~~~~i~~f~Spl~~i~~virtkst~~ls~~~~~~~~~n~~~W~~Y 154 (243)
.+.+|+...+.... +.+||+.+++|+||++++|+......+.+...|..|
T Consensus 4 S~~lG~~~~~~~~~---~~~PQi~~n~k~ks~~GlS~~~~~l~~~g~~~~~~y 53 (220)
T TIGR00951 4 SQILGWGYVAAWSI---SFYPQIIKNWRRKSAEGLSFDFVMLNLVGFTAYVIF 53 (220)
T ss_pred HHHHHHHHHHHHHH---HHhhHHHHHHhccccCCcCHHHHHHHHHHHHHHHHH
Confidence 45677777665555 459999999999999999999999999999999999
No 13
>smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins. Function unknown, but likely to be associated with the glycosylation machinery.
Probab=96.23 E-value=0.0042 Score=37.17 Aligned_cols=28 Identities=32% Similarity=0.546 Sum_probs=23.4
Q ss_pred ccHHHHHHHHHhcCCCCCCchhHHHHHH
Q 047365 10 APMPTFYKIYKKKSTEGFQSVPYVISLF 37 (243)
Q Consensus 10 Splp~i~~I~k~kst~~~s~~p~v~~~~ 37 (243)
+.+||+++++|+||++++|...+.+...
T Consensus 2 ~~~PQi~~~~~~ks~~glS~~~~~l~~~ 29 (32)
T smart00679 2 SLLPQIIKNYRRKSTEGLSILFVLLWLL 29 (32)
T ss_pred cchhHHHHHHHcCCcCcCCHHHHHHHHh
Confidence 6789999999999999999777665443
No 14
>PHA02246 hypothetical protein
Probab=95.74 E-value=0.14 Score=42.37 Aligned_cols=158 Identities=16% Similarity=0.265 Sum_probs=85.2
Q ss_pred hhHhhccHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHhhccccCc--eeeeehhhHHHHHHHHHHHhhhhccCcchh
Q 047365 5 FLVCLAPMPTFYKIYKKKSTEGFQSVPYVISLFSAMIWIYYALLKQNA--IFLMTINTFCCVMQTIYIAVYVFYAPKKVR 82 (243)
Q Consensus 5 ~~~~lSplp~i~~I~k~kst~~~s~~p~v~~~~n~~lW~~YG~l~~d~--~~v~~~N~~G~~l~~~y~~v~~~y~~~~~~ 82 (243)
++....-+|+...+.|.|+.+++|-+ ||-...-...-..|-.+..|. +. +.+-+....++++.+.+-- |+ ||+.
T Consensus 14 ilit~gYipgL~slvk~~nv~GvS~~-FWYLi~~tvgiSfyNlL~T~~~~fq-i~svg~nl~lgivcLlv~~-~r-kkd~ 89 (192)
T PHA02246 14 ILITVGYIPGLVALVKAESVKGVSNY-FWYLIVATVGISFYNLLLTDASVFQ-IVSVGLNLTLGIVCLLVAS-YR-KKDY 89 (192)
T ss_pred HHHHhhhhhhHHHHhhhcccccHHHH-HHHHHHHHHHHHHHHHHhcCCceEE-Eeeeehhhhhhhhheeeeh-hh-cccc
Confidence 34456678999999999999999865 444455556667777765543 32 2223333444555553332 22 2221
Q ss_pred HH-HHHHHHHHHHHhhhHh--HHHHHHHHHHHHHHHHhhccccccceeeecCcccccChhHHHHHHhhhHHHHHhhhccc
Q 047365 83 IQ-TVKLLLLLNIFGFGAI--REKILGYICMTFALSVFAAPLFIVRKVIKTKSVEYMPFTLSFFLTIGAVAWFFYGLLIK 159 (243)
Q Consensus 83 ~~-~~~~~~~~~v~~~~~~--~~~~lG~ia~~~~i~~f~Spl~~i~~virtkst~~ls~~~~~~~~~n~~~W~~YG~l~~ 159 (243)
.. ...+++-+..+.++-. ..+.+|.+ . ..++-++|+.+-+|||++|+.+.+.++....+-.+- .......
T Consensus 90 f~~~fiiifSLllfll~~~~evtQtVat~---t---IiLaYi~QIIqfyKTK~SEg~n~~l~lii~~GL~~L-~~~m~Lt 162 (192)
T PHA02246 90 FSIPFIIVFSLLLFLLSDFTALTQTVATI---T---IILAYVTQITTFYKTKSAEGTNRFLFLIIGLGLASL-IVSMVLT 162 (192)
T ss_pred ccchHHHHHHHHHHHHhhhHHHHHHHHHH---H---HHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHHHH-HHHHhhh
Confidence 11 1111111111122211 23333322 2 223448999999999999999988876655554333 3344433
Q ss_pred C--eeeEechhHHHHH
Q 047365 160 D--LNVAIPNVLGFIF 173 (243)
Q Consensus 160 d--~~i~~~N~~G~~l 173 (243)
. ..+++.-.+.+++
T Consensus 163 hv~~hIiiTEf~N~iL 178 (192)
T PHA02246 163 HTYVHIIATEFVNFVL 178 (192)
T ss_pred CCcceeeHHHHHHHHH
Confidence 2 4666654444433
No 15
>smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins. Function unknown, but likely to be associated with the glycosylation machinery.
Probab=94.78 E-value=0.0078 Score=36.00 Aligned_cols=29 Identities=21% Similarity=0.242 Sum_probs=24.3
Q ss_pred ccccccceeeecCcccccChhHHHHHHhh
Q 047365 119 APLFIVRKVIKTKSVEYMPFTLSFFLTIG 147 (243)
Q Consensus 119 Spl~~i~~virtkst~~ls~~~~~~~~~n 147 (243)
+.+||+.+++|+||++++|+.+.+..+.+
T Consensus 2 ~~~PQi~~~~~~ks~~glS~~~~~l~~~G 30 (32)
T smart00679 2 SLLPQIIKNYRRKSTEGLSILFVLLWLLG 30 (32)
T ss_pred cchhHHHHHHHcCCcCcCCHHHHHHHHhc
Confidence 56899999999999999998887655443
No 16
>PF03650 MPC: Uncharacterised protein family (UPF0041); InterPro: IPR005336 This is a family of proteins of unknown function.
Probab=93.84 E-value=0.016 Score=45.77 Aligned_cols=62 Identities=18% Similarity=0.222 Sum_probs=54.9
Q ss_pred cCcccccChhHHHHHHhhhHHHHHhhhcc--cCeeeEechhHHHHHHHHhhhheEEEeCCCccc
Q 047365 130 TKSVEYMPFTLSFFLTIGAVAWFFYGLLI--KDLNVAIPNVLGFIFGVLQMILYVIYKNPNKKI 191 (243)
Q Consensus 130 tkst~~ls~~~~~~~~~n~~~W~~YG~l~--~d~~i~~~N~~G~~l~~~ql~l~~~y~~~~~~~ 191 (243)
+|..|.+|..+..+.++.+.+|..|...+ +|+.++..|..-...++.|+.=++.|...+++.
T Consensus 39 ~rppe~IS~~qt~aL~~tg~iw~Rys~~I~P~Ny~L~a~n~~~~~~q~~Ql~R~~~y~~~~~~~ 102 (119)
T PF03650_consen 39 KRPPEKISGPQTSALCATGLIWMRYSLVITPRNYLLFACNFFNATTQLYQLYRKLNYQYSQKKE 102 (119)
T ss_pred CCCHHHHhHHHHHHHHHHHHHHHHHheeecCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCch
Confidence 58999999999999999999999999998 688888899999999999998888887665544
No 17
>PF10688 Imp-YgjV: Bacterial inner membrane protein; InterPro: IPR019629 This entry represents inner membrane proteins, many are YgjV proteins. Their function is unknown.
Probab=92.52 E-value=1.3 Score=36.70 Aligned_cols=120 Identities=13% Similarity=0.295 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHhhccccCceeeeehhhHHHHHHHHHHHhhhhccCcchhHHHHHHHHHHHHHhhhHh----HHHHHHHH
Q 047365 33 VISLFSAMIWIYYALLKQNAIFLMTINTFCCVMQTIYIAVYVFYAPKKVRIQTVKLLLLLNIFGFGAI----REKILGYI 108 (243)
Q Consensus 33 v~~~~n~~lW~~YG~l~~d~~~v~~~N~~G~~l~~~y~~v~~~y~~~~~~~~~~~~~~~~~v~~~~~~----~~~~lG~i 108 (243)
......+.++...-.+.+.+. -+.+..++.+-..+-.++.+ +. ...++.......+.. -.+.++.+
T Consensus 30 ~~~~~~~~~~~ihf~LLGa~t-----aa~~~~ls~~R~~~s~~~~~---~~--v~~~Fi~~~~~~~~~~~~g~~~~l~~~ 99 (163)
T PF10688_consen 30 LLQAISCLLFAIHFALLGAWT-----AALSMLLSAVRNFVSIRTRS---RW--VMAVFIALSLVMGLFTWQGWIELLPYA 99 (163)
T ss_pred HHHHHHHHHHHHHHHHhChHH-----HHHHHHHHHHHHHHHHHhCC---HH--HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 455566666666666666653 56667777777766655543 11 111111111112222 23455555
Q ss_pred HHHHHH-HHhhccccccceeeecCcccccChhHHHHHHhhhHHHHHhhhcccCeeeEechhHHHHHHHHhh
Q 047365 109 CMTFAL-SVFAAPLFIVRKVIKTKSVEYMPFTLSFFLTIGAVAWFFYGLLIKDLNVAIPNVLGFIFGVLQM 178 (243)
Q Consensus 109 a~~~~i-~~f~Spl~~i~~virtkst~~ls~~~~~~~~~n~~~W~~YG~l~~d~~i~~~N~~G~~l~~~ql 178 (243)
+++... ++| . .+++. +=....+++.+|+.|++..++++....|....+.+.+.+
T Consensus 100 as~~~t~a~f---~-----------~~~~~--mR~~~l~~~~~w~~~n~~igS~~g~l~e~~~~~~n~~~i 154 (163)
T PF10688_consen 100 ASVLGTIALF---M-----------LDGIK--MRILMLVGTLCWLIYNILIGSWGGTLMEALFIISNLITI 154 (163)
T ss_pred HHHHHHHHHH---h-----------cCchh--HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence 444332 222 1 11222 225678999999999999999999999998888887754
No 18
>KOG1589 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.68 E-value=0.067 Score=41.43 Aligned_cols=60 Identities=23% Similarity=0.373 Sum_probs=52.6
Q ss_pred cCcccccChhHHHHHHhhhHHHHHhhhcc--cCeeeEechhHHHHHHHHhhhheEEEeCCCc
Q 047365 130 TKSVEYMPFTLSFFLTIGAVAWFFYGLLI--KDLNVAIPNVLGFIFGVLQMILYVIYKNPNK 189 (243)
Q Consensus 130 tkst~~ls~~~~~~~~~n~~~W~~YG~l~--~d~~i~~~N~~G~~l~~~ql~l~~~y~~~~~ 189 (243)
.|..|.+|..-..+.+..+++|.-|++.+ +|+.+...|.+=.+.++.|+.=++.|....+
T Consensus 43 arP~eklS~~q~~al~aTg~IWtRySlVI~PkN~~LfsVN~f~~~tg~~QL~Ri~~y~~~~~ 104 (118)
T KOG1589|consen 43 ARPPEKLSYAQNAALTATGLIWTRYSLVITPKNYSLFSVNFFVAITGIYQLTRIANYQQQQK 104 (118)
T ss_pred cCChHHcChhhhHHHHHhhhhheeeeEEEeccchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888999999999999999999999987 7899999999999999999988888844333
No 19
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=88.08 E-value=2.7 Score=41.96 Aligned_cols=152 Identities=12% Similarity=0.115 Sum_probs=85.0
Q ss_pred HhcCCCCCCchhH-HHHHHHHHHHHHhhccccCceeeeehhhHHHHHHHHHHHhhhhccCcchhHHHH-HHH-----HH-
Q 047365 20 KKKSTEGFQSVPY-VISLFSAMIWIYYALLKQNAIFLMTINTFCCVMQTIYIAVYVFYAPKKVRIQTV-KLL-----LL- 91 (243)
Q Consensus 20 k~kst~~~s~~p~-v~~~~n~~lW~~YG~l~~d~~~v~~~N~~G~~l~~~y~~v~~~y~~~~~~~~~~-~~~-----~~- 91 (243)
.+|.-+.+-|.-| ...+.++.+-+.||++.+|. |++.-.++|.++..=-+.+- . +.+...+.. .++ +.
T Consensus 32 sek~~~s~~p~~FW~~Sl~g~~~l~~y~~~~~~~-~~~~~q~~~~~iy~rNl~l~--~-~~~~~~~~~~~~~~~~~~~~~ 107 (608)
T PRK01021 32 SKKRKYSYVPKIFWILSSIGAVLMICHGFIQSQF-PIALLHSFNLIIYFRNLNIA--S-SRPLSVSKTLSLLVLSATAIT 107 (608)
T ss_pred HHhcCCccCchHHHHHHHHHHHHHHHHHHHhcCC-cEEEecccceEEEeehhhhc--c-cccchHHHHHHHHHhhhHhhh
Confidence 3444445555555 55678899999999988776 46655555544321111110 1 111111111 000 00
Q ss_pred --HHHHhhhHh-----------H---------HHHHHHHHHHHHHHHhhccccccceeeecCcccccChhHHHHHHhhhH
Q 047365 92 --LNIFGFGAI-----------R---------EKILGYICMTFALSVFAAPLFIVRKVIKTKSVEYMPFTLSFFLTIGAV 149 (243)
Q Consensus 92 --~~v~~~~~~-----------~---------~~~lG~ia~~~~i~~f~Spl~~i~~virtkst~~ls~~~~~~~~~n~~ 149 (243)
+.+..|.+. . -..+|.+|-++-..-| +-|-... .++.-+.+|...-..+++++.
T Consensus 108 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~q~~f~~Rf---~~Qw~~s-e~~~~s~~p~~FW~~s~~G~~ 183 (608)
T PRK01021 108 LPFAIGTRYYPNMTWMASPNIFHLPLPPANLSWHLIGCIGLTIFSLRF---FIQWFYL-EYNNQSALPALFWKASLLGGS 183 (608)
T ss_pred hHHHHHHHHhcCcchhhhHHHhhCCCcchhHHHHHHHHHHHHHHHHHH---HHHHHHH-HhcCCCCCcHHHHHHHHHhHH
Confidence 111122211 1 1345666554322222 3332222 233344578888889999999
Q ss_pred HHHHhhhcccCeeeEechhHHHHHHHHhhh
Q 047365 150 AWFFYGLLIKDLNVAIPNVLGFIFGVLQMI 179 (243)
Q Consensus 150 ~W~~YG~l~~d~~i~~~N~~G~~l~~~ql~ 179 (243)
+=+.|++..+|...++....|++..+=.+.
T Consensus 184 ~~l~Y~i~r~dpv~i~g~~~g~~~y~rnl~ 213 (608)
T PRK01021 184 LALLYFIRTGDPVNILCYGCGLFPSLANLR 213 (608)
T ss_pred HHHHHHHHhCCceEEEccccchhHHHHHHH
Confidence 999999999999999999999998877663
No 20
>PF03650 MPC: Uncharacterised protein family (UPF0041); InterPro: IPR005336 This is a family of proteins of unknown function.
Probab=85.61 E-value=0.44 Score=37.65 Aligned_cols=60 Identities=20% Similarity=0.275 Sum_probs=51.0
Q ss_pred hcCCCCCCchhHHHHHHHHHHHHHhhcccc--CceeeeehhhHHHHHHHHHHHhhhhccCcch
Q 047365 21 KKSTEGFQSVPYVISLFSAMIWIYYALLKQ--NAIFLMTINTFCCVMQTIYIAVYVFYAPKKV 81 (243)
Q Consensus 21 ~kst~~~s~~p~v~~~~n~~lW~~YG~l~~--d~~~v~~~N~~G~~l~~~y~~v~~~y~~~~~ 81 (243)
+|..|.+|.-+-..+.+.+++|+.|++.+. |+ .++.+|.+-...+.+.+.=++.|...++
T Consensus 39 ~rppe~IS~~qt~aL~~tg~iw~Rys~~I~P~Ny-~L~a~n~~~~~~q~~Ql~R~~~y~~~~~ 100 (119)
T PF03650_consen 39 KRPPEKISGPQTSALCATGLIWMRYSLVITPRNY-LLFACNFFNATTQLYQLYRKLNYQYSQK 100 (119)
T ss_pred CCCHHHHhHHHHHHHHHHHHHHHHHheeecCchH-HHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 588999999999999999999999999775 56 5899999999999999877777754443
No 21
>KOG3145 consensus Cystine transporter Cystinosin [Amino acid transport and metabolism]
Probab=83.74 E-value=8.3 Score=35.36 Aligned_cols=176 Identities=16% Similarity=0.187 Sum_probs=85.2
Q ss_pred hccHHHHHHHHHhcCCCCCCch--hH-----H-HHHHHHHHHHHhhc-cccC--------ceeeeehh-----hHHHHHH
Q 047365 9 LAPMPTFYKIYKKKSTEGFQSV--PY-----V-ISLFSAMIWIYYAL-LKQN--------AIFLMTIN-----TFCCVMQ 66 (243)
Q Consensus 9 lSplp~i~~I~k~kst~~~s~~--p~-----v-~~~~n~~lW~~YG~-l~~d--------~~~v~~~N-----~~G~~l~ 66 (243)
.|..||++-=+|+||+.+++.= +. . -..+|+.+ +|.. ++++ ..|+ ..| .=|+++.
T Consensus 137 ISfYPqii~N~RrKSv~gLnfDFv~LNl~Gfs~y~ifn~~l--y~~~~iq~~y~~~~p~g~~pv-~~nDv~fslHa~lmt 213 (372)
T KOG3145|consen 137 ISFYPQIILNWRRKSVVGLNFDFVMLNLTGFSAYSIFNFLL--YYCPKIQNQYDTSYPLGVPPV-TLNDVVFSLHAVLMT 213 (372)
T ss_pred eeechHHHhhhhhcceeccccceeeehhhhhHHHHHHHHHH--HhcHHhccceeccCCCCCCcc-chhhhhhhHHHHHHH
Confidence 4678999999999999988742 11 1 11222221 2221 1111 1122 222 2345556
Q ss_pred HHHHHhhhhccCcchhHHH-HHHHHHHHHHhhhHh--------H------HHHHHHHHHHHHHHHhhccccccceeeecC
Q 047365 67 TIYIAVYVFYAPKKVRIQT-VKLLLLLNIFGFGAI--------R------EKILGYICMTFALSVFAAPLFIVRKVIKTK 131 (243)
Q Consensus 67 ~~y~~v~~~y~~~~~~~~~-~~~~~~~~v~~~~~~--------~------~~~lG~ia~~~~i~~f~Spl~~i~~virtk 131 (243)
.+-+.--..|.+..+|... +.+..++.+.+++.. . -..+..+-...+.+=| +||.+...++|
T Consensus 214 ~Iti~Qc~~yeR~~q~vs~~ialgil~i~~~f~~~~~~va~~~~~~wL~f~~~~syiKl~mTliKY---iPQa~mN~tRK 290 (372)
T KOG3145|consen 214 VITILQCFFYERGWQRVSKGIALGILAIFWLFAVVFMYVAYWYVIRWLAFLNNLSYIKLAMTLIKY---IPQAYMNFTRK 290 (372)
T ss_pred HHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHhhcceec
Confidence 6555555566655544321 111111111112111 1 1122333333444444 89999999999
Q ss_pred cccccChhHH----HHHHhhhHHHHHhhhcccCeeeEechh-------HHHHHHHHhhhheEEEeCCCcc
Q 047365 132 SVEYMPFTLS----FFLTIGAVAWFFYGLLIKDLNVAIPNV-------LGFIFGVLQMILYVIYKNPNKK 190 (243)
Q Consensus 132 st~~ls~~~~----~~~~~n~~~W~~YG~l~~d~~i~~~N~-------~G~~l~~~ql~l~~~y~~~~~~ 190 (243)
|+++-|..=. ..+.++-+--++-..-.+||--+..|- +.+++.++.+...+.+.++++.
T Consensus 291 St~gwsIgnIlLDfTGG~~slLQMilQ~~N~~sw~~f~gnp~KfGLg~vSi~FdiiFm~QhyVly~~~~~ 360 (372)
T KOG3145|consen 291 STVGWSIGNILLDFTGGTASLLQMILQSSNDNSWDTFYGNPGKFGLGLVSIFFDIIFMMQHYVLYPRGHV 360 (372)
T ss_pred cccccccccEEEEecccHHHHHHHHHHHhccccHHHHhcCchhhhhhhHHHHHHHHHHhhheeEeccccc
Confidence 9997664321 223333333333333345555555543 4445556666666666555553
No 22
>PHA02246 hypothetical protein
Probab=82.93 E-value=5.9 Score=32.91 Aligned_cols=61 Identities=20% Similarity=0.271 Sum_probs=40.2
Q ss_pred hhHhhccHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHhhccccCceeeeehhhHHHHH
Q 047365 5 FLVCLAPMPTFYKIYKKKSTEGFQSVPYVISLFSAMIWIYYALLKQNAIFLMTINTFCCVM 65 (243)
Q Consensus 5 ~~~~lSplp~i~~I~k~kst~~~s~~p~v~~~~n~~lW~~YG~l~~d~~~v~~~N~~G~~l 65 (243)
.-.-++-+||+.+-+|+|+.||.|..-|++...+-.+-..-=.+++-+.-++.+-.....+
T Consensus 118 ~tIiLaYi~QIIqfyKTK~SEg~n~~l~lii~~GL~~L~~~m~Lthv~~hIiiTEf~N~iL 178 (192)
T PHA02246 118 ITIILAYVTQITTFYKTKSAEGTNRFLFLIIGLGLASLIVSMVLTHTYVHIIATEFVNFVL 178 (192)
T ss_pred HHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHHHHHHHHhhhCCcceeeHHHHHHHHH
Confidence 3455678999999999999999999988776665444433333444432255554444433
No 23
>KOG1589 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.10 E-value=1.1 Score=34.92 Aligned_cols=57 Identities=18% Similarity=0.315 Sum_probs=50.0
Q ss_pred hcCCCCCCchhHHHHHHHHHHHHHhhcccc--CceeeeehhhHHHHHHHHHHHhhhhccC
Q 047365 21 KKSTEGFQSVPYVISLFSAMIWIYYALLKQ--NAIFLMTINTFCCVMQTIYIAVYVFYAP 78 (243)
Q Consensus 21 ~kst~~~s~~p~v~~~~n~~lW~~YG~l~~--d~~~v~~~N~~G~~l~~~y~~v~~~y~~ 78 (243)
+|..|.+|...........++|..|...+. |+. ++.+|.+=...+.+++.=.+.|..
T Consensus 43 arP~eklS~~q~~al~aTg~IWtRySlVI~PkN~~-LfsVN~f~~~tg~~QL~Ri~~y~~ 101 (118)
T KOG1589|consen 43 ARPPEKLSYAQNAALTATGLIWTRYSLVITPKNYS-LFSVNFFVAITGIYQLTRIANYQQ 101 (118)
T ss_pred cCChHHcChhhhHHHHHhhhhheeeeEEEeccchh-hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999999999998764 675 899999999999999988888843
No 24
>KOG3211 consensus Predicted endoplasmic reticulum membrane protein Lec35/MPDU1 involved in monosaccharide-P-dolichol utilization [General function prediction only]
Probab=81.01 E-value=2.6 Score=36.54 Aligned_cols=75 Identities=11% Similarity=0.186 Sum_probs=60.9
Q ss_pred hHhhccHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHhhccccCceeeeehhhHHHHHHHHHHHhhhhccCcc
Q 047365 6 LVCLAPMPTFYKIYKKKSTEGFQSVPYVISLFSAMIWIYYALLKQNAIFLMTINTFCCVMQTIYIAVYVFYAPKK 80 (243)
Q Consensus 6 ~~~lSplp~i~~I~k~kst~~~s~~p~v~~~~n~~lW~~YG~l~~d~~~v~~~N~~G~~l~~~y~~v~~~y~~~~ 80 (243)
..-.|-++|+..=+|+|++|..|.+....-...|..=..|.....+.+.+...-.+..+++.....-+++|.+++
T Consensus 152 i~v~sr~~Qi~~n~~~~~tgqls~it~fLsf~g~lARiftsiq~t~d~~mll~~v~s~~~Ng~i~aq~l~Y~s~~ 226 (230)
T KOG3211|consen 152 IVVVSRLLQIQCNYHNRSTGQLSLITVFLSFGGCLARIFTSIQETGDFLMLLRFVISLALNGLITAQVLRYWSTA 226 (230)
T ss_pred hhhHHHHHHHHHHhcccccchhHHHHHHHHhhhHHHHHHHHHHhcCChhhHHHHHHHHHHhHHHHHHHHHHHhcC
Confidence 345788999999999999999999999999999999999999776655577777778888777776666665443
No 25
>KOG2913 consensus Predicted membrane protein [Function unknown]
Probab=79.78 E-value=2.8 Score=37.51 Aligned_cols=47 Identities=13% Similarity=-0.030 Sum_probs=38.3
Q ss_pred HHHhhccccccceeeecCcccccChhHHHHHHhhhHHHHHhhhcccC
Q 047365 114 LSVFAAPLFIVRKVIKTKSVEYMPFTLSFFLTIGAVAWFFYGLLIKD 160 (243)
Q Consensus 114 i~~f~Spl~~i~~virtkst~~ls~~~~~~~~~n~~~W~~YG~l~~d 160 (243)
++--.+-+||+.+..|+||.+++|....+...++...=+.|-.+.+-
T Consensus 18 ~~w~v~~iPqi~~n~r~Ks~~glS~lfl~~Wligdi~nl~g~~l~~~ 64 (260)
T KOG2913|consen 18 VCWCVQLIPQIIENYRRKSTEGLSPLFLLTWLIGDIFNLVGFFLQPL 64 (260)
T ss_pred HhhhhhhhhHHHHhhhccccCCCCHHHHHHHHHccHHHHHHHHhccc
Confidence 33345569999999999999999999998888888887787777653
No 26
>PF10688 Imp-YgjV: Bacterial inner membrane protein; InterPro: IPR019629 This entry represents inner membrane proteins, many are YgjV proteins. Their function is unknown.
Probab=67.91 E-value=5.8 Score=32.86 Aligned_cols=37 Identities=16% Similarity=0.325 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHhhccccCceeeeehhhHHHHHHHHHH
Q 047365 33 VISLFSAMIWIYYALLKQNAIFLMTINTFCCVMQTIYI 70 (243)
Q Consensus 33 v~~~~n~~lW~~YG~l~~d~~~v~~~N~~G~~l~~~y~ 70 (243)
...+.++.+|+.|+++.+++ +....|......+.+.+
T Consensus 118 ~~~l~~~~~w~~~n~~igS~-~g~l~e~~~~~~n~~~i 154 (163)
T PF10688_consen 118 ILMLVGTLCWLIYNILIGSW-GGTLMEALFIISNLITI 154 (163)
T ss_pred HHHHHHHHHHHHHHHHHcCH-HHHHHHHHHHHHHHHHH
Confidence 56889999999999999999 47788888888887554
No 27
>PF07578 LAB_N: Lipid A Biosynthesis N-terminal domain; InterPro: IPR011499 This domain is found at the N terminus of a group of Chlamydial lipid A biosynthesis proteins. It is also found by itself in a family of proteins of unknown function.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=66.08 E-value=4.6 Score=29.13 Aligned_cols=42 Identities=17% Similarity=0.420 Sum_probs=34.3
Q ss_pred cccChhHHHHHHhhhHHHHHhhhcccCeeeEechhHHHHHHH
Q 047365 134 EYMPFTLSFFLTIGAVAWFFYGLLIKDLNVAIPNVLGFIFGV 175 (243)
Q Consensus 134 ~~ls~~~~~~~~~n~~~W~~YG~l~~d~~i~~~N~~G~~l~~ 175 (243)
+.+|..--..+.+++.+=+.||+.++|...++....|.+...
T Consensus 26 sv~P~~FW~lSl~Gs~lll~Y~i~r~DpV~ilgq~~gl~iy~ 67 (72)
T PF07578_consen 26 SVVPVAFWYLSLIGSLLLLIYAIIRKDPVFILGQSFGLFIYI 67 (72)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHcChHHHHHHhcChHHHH
Confidence 346777778899999999999999999987777777776543
No 28
>PF07578 LAB_N: Lipid A Biosynthesis N-terminal domain; InterPro: IPR011499 This domain is found at the N terminus of a group of Chlamydial lipid A biosynthesis proteins. It is also found by itself in a family of proteins of unknown function.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=55.58 E-value=17 Score=26.15 Aligned_cols=49 Identities=16% Similarity=0.407 Sum_probs=31.1
Q ss_pred HHHHHHHhcCCCCCCchh-HHHHHHHHHHHHHhhccccCceeeeehhhHHHHH
Q 047365 14 TFYKIYKKKSTEGFQSVP-YVISLFSAMIWIYYALLKQNAIFLMTINTFCCVM 65 (243)
Q Consensus 14 ~i~~I~k~kst~~~s~~p-~v~~~~n~~lW~~YG~l~~d~~~v~~~N~~G~~l 65 (243)
|-..-.|+|. .+-|.. ....+.++.+-+.||...+|+. .+...++|.++
T Consensus 16 QW~~SEk~k~--sv~P~~FW~lSl~Gs~lll~Y~i~r~DpV-~ilgq~~gl~i 65 (72)
T PF07578_consen 16 QWIYSEKAKK--SVVPVAFWYLSLIGSLLLLIYAIIRKDPV-FILGQSFGLFI 65 (72)
T ss_pred HHHHHHHcCC--CCCcHHHHHHHHHHHHHHHHHHHHHcChH-HHHHHhcChHH
Confidence 3333344443 334444 4677888999999999999984 45555555544
No 29
>COG3952 Predicted membrane protein [Function unknown]
Probab=53.64 E-value=7.2 Score=30.18 Aligned_cols=56 Identities=13% Similarity=0.224 Sum_probs=47.5
Q ss_pred eecCcccccChhHHHHHHhhhHHHHHhhhcccCeeeEechhHHHHHHHHhhhheEE
Q 047365 128 IKTKSVEYMPFTLSFFLTIGAVAWFFYGLLIKDLNVAIPNVLGFIFGVLQMILYVI 183 (243)
Q Consensus 128 irtkst~~ls~~~~~~~~~n~~~W~~YG~l~~d~~i~~~N~~G~~l~~~ql~l~~~ 183 (243)
.+.++.+.+|.+.--++.+++.+=+.|-+-++|..=+..|+.|+..++..+-+...
T Consensus 48 se~a~rsv~P~~FW~~sllGg~l~L~Yfi~~~DpV~Vl~~~~glF~~l~nL~L~~k 103 (113)
T COG3952 48 SEHANRSVIPVLFWYFSLLGGLLLLSYFIRRQDPVFVLGQACGLFIYLRNLWLIIK 103 (113)
T ss_pred HHhcCCCcchHHHHHHHHHhhHHHHHHHHHhcchHHHHHHhhhHHHHHHHHHHHHH
Confidence 46677888999999999999999999999999988888899999988887654433
No 30
>COG5196 ERD2 ER lumen protein retaining receptor [Intracellular trafficking and secretion]
Probab=51.73 E-value=34 Score=28.92 Aligned_cols=64 Identities=17% Similarity=0.219 Sum_probs=41.3
Q ss_pred hccccccceeeecCcccccChhHHHHHHhhhHHHHHhhhcccCeeeEechhHHHHHHHHhhhhe
Q 047365 118 AAPLFIVRKVIKTKSVEYMPFTLSFFLTIGAVAWFFYGLLIKDLNVAIPNVLGFIFGVLQMILY 181 (243)
Q Consensus 118 ~Spl~~i~~virtkst~~ls~~~~~~~~~n~~~W~~YG~l~~d~~i~~~N~~G~~l~~~ql~l~ 181 (243)
.+-+||+....|.+.+|++...-.+++.+--.+.+-|.+.....-+--.--+.+..|++|..+|
T Consensus 130 VAILPQL~mLq~~GeteslT~hYvfamgLYRalYip~wI~r~~~~~kk~~~iai~aGivQTlLY 193 (214)
T COG5196 130 VAILPQLVMLQEAGETESLTSHYVFAMGLYRALYIPYWILRKVYDIKKTGNIAIAAGIVQTLLY 193 (214)
T ss_pred HHHHHHHHHHHhcCCcceeHHHHHHHHHHHHHhhhhHHHHHhhhcccccccchhHHHHHHHHHH
Confidence 4458999999999999999888877777776677777666422111111123344555565554
No 31
>KOG3106 consensus ER lumen protein retaining receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.91 E-value=22 Score=30.55 Aligned_cols=59 Identities=22% Similarity=0.336 Sum_probs=38.5
Q ss_pred hccccccceeeecCcccccChhHHHH----HHhhhHHHHHhhhcccCeeeEechhHHHHHHHHhhhhe
Q 047365 118 AAPLFIVRKVIKTKSVEYMPFTLSFF----LTIGAVAWFFYGLLIKDLNVAIPNVLGFIFGVLQMILY 181 (243)
Q Consensus 118 ~Spl~~i~~virtkst~~ls~~~~~~----~~~n~~~W~~YG~l~~d~~i~~~N~~G~~l~~~ql~l~ 181 (243)
.|-+||++.+.|++.+|.+...-.++ =.+.+.-| +|-...+|.+-. +..+.+++|.++|
T Consensus 129 VaILPQL~~lq~tg~~E~~TahYvfaLG~yR~ly~~~W-I~r~~~e~~~~~----iai~agiVQT~ly 191 (212)
T KOG3106|consen 129 VAILPQLFMLQKTGEAETITAHYLFALGLYRALYIANW-IYRYVTEDFWDP----IAIVAGIVQTVLY 191 (212)
T ss_pred HHHhHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHH-HHHHHhhccccc----hHHHHHHHHHHHH
Confidence 45599999999999999987554443 34555666 445555663332 4455666776665
No 32
>KOG2489 consensus Transmembrane protein [General function prediction only]
Probab=46.88 E-value=81 Score=31.07 Aligned_cols=173 Identities=16% Similarity=0.147 Sum_probs=107.1
Q ss_pred hhccHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHhhccccCceeeeehhhHHHHHHHHHHHh------------h--
Q 047365 8 CLAPMPTFYKIYKKKSTEGFQSVPYVISLFSAMIWIYYALLKQNAIFLMTINTFCCVMQTIYIAV------------Y-- 73 (243)
Q Consensus 8 ~lSplp~i~~I~k~kst~~~s~~p~v~~~~n~~lW~~YG~l~~d~~~v~~~N~~G~~l~~~y~~v------------~-- 73 (243)
|++.=.++-=+.|+||-+|+|.=..+.-+++..+=.+|=.=.+..+.|.++-++|.+++..=+-- +
T Consensus 333 fLAFKNDIqFWn~rKsmeGLS~rsvl~~~F~s~IIflYllDneTs~mVlvs~gvG~~IE~WKi~K~m~v~id~~g~i~gv 412 (592)
T KOG2489|consen 333 FLAFKNDIQFWNKRKSMEGLSVRSVLWRCFSSLIIFLYLLDNETSFMVLVSVGVGLLIELWKIKKAMKVEIDWSGLIPGV 412 (592)
T ss_pred HHHhcchHHHhccccccccccHHHHHHHHHHHHhhhheeecCCccEEEEEeccceeeeeeeecceEEEEEEecccccccc
Confidence 34444455667899999999999998889988888888654443456888889998886432210 0
Q ss_pred ---------hhccCcchhHH---HHHHH---HHHHHH---hhhHh-------HHHHHHHHHHHHHHHHhhccccccceee
Q 047365 74 ---------VFYAPKKVRIQ---TVKLL---LLLNIF---GFGAI-------REKILGYICMTFALSVFAAPLFIVRKVI 128 (243)
Q Consensus 74 ---------~~y~~~~~~~~---~~~~~---~~~~v~---~~~~~-------~~~~lG~ia~~~~i~~f~Spl~~i~~vi 128 (243)
=.|+.++.+.. -.|.+ +.-.+. .|+.+ ..-++..+.+..-.+-|.-.+||+--..
T Consensus 413 ~pRl~f~dkgsysE~~Tk~yD~~A~kYLs~~L~PL~vg~aVYSLlY~~hKsWYSWvLn~l~~~vy~FGFi~M~PQLFINY 492 (592)
T KOG2489|consen 413 LPRLSFSDKGSYSESKTKEYDDQAMKYLSYLLFPLLVGGAVYSLLYVEHKSWYSWVLNSLYNGVYAFGFIFMLPQLFINY 492 (592)
T ss_pred cccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccHHHHHHHHHHhHHHHHHHHHhChHHHhhh
Confidence 11222222110 11222 221122 23333 3456666666555566777899999999
Q ss_pred ecCcccccChhHHHHHHhhhHHHHHh------------hhcccCeeeEechhHHHHHHHHhhhheEEEeCCCccc
Q 047365 129 KTKSVEYMPFTLSFFLTIGAVAWFFY------------GLLIKDLNVAIPNVLGFIFGVLQMILYVIYKNPNKKI 191 (243)
Q Consensus 129 rtkst~~ls~~~~~~~~~n~~~W~~Y------------G~l~~d~~i~~~N~~G~~l~~~ql~l~~~y~~~~~~~ 191 (243)
|-||++.+|..++.--++|.++==++ |...+|..- ++++-.-|+||-++++.
T Consensus 493 KLKSVAHLPWR~~tYKa~NTFIDDlFAFVIkMPt~hRl~CfRDDIVF-----------lIYLYQRWlYpVD~tRv 556 (592)
T KOG2489|consen 493 KLKSVAHLPWRAFTYKAFNTFIDDLFAFVIKMPTLHRLACFRDDIVF-----------LIYLYQRWLYPVDKTRV 556 (592)
T ss_pred hhhhhhcCcHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccceEE-----------EeeehhhhccccChhhh
Confidence 99999999999987777776543222 223344311 23555568898887776
No 33
>PF15102 TMEM154: TMEM154 protein family
Probab=34.14 E-value=48 Score=27.13 Aligned_cols=30 Identities=27% Similarity=0.315 Sum_probs=19.8
Q ss_pred eeEechhHHHHHHHHhhhheEEEeCCCccc
Q 047365 162 NVAIPNVLGFIFGVLQMILYVIYKNPNKKI 191 (243)
Q Consensus 162 ~i~~~N~~G~~l~~~ql~l~~~y~~~~~~~ 191 (243)
.|++|-+++.++-+..+.+..+|+|++.|.
T Consensus 60 mIlIP~VLLvlLLl~vV~lv~~~kRkr~K~ 89 (146)
T PF15102_consen 60 MILIPLVLLVLLLLSVVCLVIYYKRKRTKQ 89 (146)
T ss_pred EEeHHHHHHHHHHHHHHHheeEEeecccCC
Confidence 566677777666666666777776666554
No 34
>COG3952 Predicted membrane protein [Function unknown]
Probab=30.01 E-value=88 Score=24.30 Aligned_cols=47 Identities=11% Similarity=0.190 Sum_probs=35.4
Q ss_pred chhH-HHHHHHHHHHHHhhccccCceeeeehhhHHHHHHHHHHHhhhhc
Q 047365 29 SVPY-VISLFSAMIWIYYALLKQNAIFLMTINTFCCVMQTIYIAVYVFY 76 (243)
Q Consensus 29 ~~p~-v~~~~n~~lW~~YG~l~~d~~~v~~~N~~G~~l~~~y~~v~~~y 76 (243)
|.+| -+.+++..+-+.|.+.++|+. -+..|+.|.+.++.-+.+.++-
T Consensus 57 P~~FW~~sllGg~l~L~Yfi~~~DpV-~Vl~~~~glF~~l~nL~L~~ke 104 (113)
T COG3952 57 PVLFWYFSLLGGLLLLSYFIRRQDPV-FVLGQACGLFIYLRNLWLIIKE 104 (113)
T ss_pred hHHHHHHHHHhhHHHHHHHHHhcchH-HHHHHhhhHHHHHHHHHHHHHH
Confidence 3444 567888999999999999985 3677888888887766665543
No 35
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=27.05 E-value=1.6e+02 Score=22.24 Aligned_cols=73 Identities=10% Similarity=0.105 Sum_probs=43.9
Q ss_pred hHhhccH-HHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHhhccccCceeeeehhhHHHHHHHHHHHhhhhccCc
Q 047365 6 LVCLAPM-PTFYKIYKKKSTEGFQSVPYVISLFSAMIWIYYALLKQNAIFLMTINTFCCVMQTIYIAVYVFYAPK 79 (243)
Q Consensus 6 ~~~lSpl-p~i~~I~k~kst~~~s~~p~v~~~~n~~lW~~YG~l~~d~~~v~~~N~~G~~l~~~y~~v~~~y~~~ 79 (243)
+.+++++ +.+.+.+|+-..-+-..+|.+....+..+=..+.++.++.. +...-..|.+.+..-..++=.++++
T Consensus 11 ~t~~~ii~~~lVq~IkkT~~v~~K~iPlIs~viGilLG~~~~~~~~~~~-l~~~~~aG~laGlAaTGL~e~~t~r 84 (93)
T PF06946_consen 11 MTFLSIITPALVQAIKKTKVVPNKWIPLISVVIGILLGAAAYPLTGDGN-LALMAWAGGLAGLAATGLFEQFTNR 84 (93)
T ss_pred HHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHhhhcCCCcc-HHHHHHHHHHhhhhhhhHHHHHHhh
Confidence 3444444 33455444422235588899999999888888888887652 2232334666666666665555543
No 36
>PHA03049 IMV membrane protein; Provisional
Probab=24.23 E-value=34 Score=24.27 Aligned_cols=23 Identities=17% Similarity=0.345 Sum_probs=17.1
Q ss_pred HHHHHHHHhhhheEEEeCCCccc
Q 047365 169 LGFIFGVLQMILYVIYKNPNKKI 191 (243)
Q Consensus 169 ~G~~l~~~ql~l~~~y~~~~~~~ 191 (243)
++.+..++-+++|-+|.+++...
T Consensus 8 ~iICVaIi~lIvYgiYnkk~~~q 30 (68)
T PHA03049 8 VIICVVIIGLIVYGIYNKKTTTS 30 (68)
T ss_pred HHHHHHHHHHHHHHHHhcccccC
Confidence 45566667788899998877665
No 37
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=23.90 E-value=25 Score=32.20 Aligned_cols=88 Identities=8% Similarity=0.163 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhccccccceeeecCcccccChhHHHHHHhhhHHHHHhhhc-ccCeeeEechhHHHHHHHHhhh
Q 047365 101 REKILGYICMTFALSVFAAPLFIVRKVIKTKSVEYMPFTLSFFLTIGAVAWFFYGLL-IKDLNVAIPNVLGFIFGVLQMI 179 (243)
Q Consensus 101 ~~~~lG~ia~~~~i~~f~Spl~~i~~virtkst~~ls~~~~~~~~~n~~~W~~YG~l-~~d~~i~~~N~~G~~l~~~ql~ 179 (243)
+..++|++--++.+.+.+.-..-++ .+|+--++.-....++..|+-+++-++-..+ ...||-+..-..=+++-+. +
T Consensus 103 Q~LF~Gi~~l~l~~lLaL~vW~Ym~-lLr~~GAs~WtiLaFcLAF~LaivlLIIAv~L~qaWfT~L~dL~WL~LFla--i 179 (381)
T PF05297_consen 103 QTLFVGIVILFLCCLLALGVWFYMW-LLRELGASFWTILAFCLAFLLAIVLLIIAVLLHQAWFTILVDLYWLLLFLA--I 179 (381)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
Confidence 4455665444433333322222222 4444444333333333333334444444444 3567666665544444333 2
Q ss_pred heEEEeCCCccc
Q 047365 180 LYVIYKNPNKKI 191 (243)
Q Consensus 180 l~~~y~~~~~~~ 191 (243)
+.|+|-.+.+..
T Consensus 180 LIWlY~H~~~~~ 191 (381)
T PF05297_consen 180 LIWLYVHDQRHA 191 (381)
T ss_dssp ------------
T ss_pred HHHHHhcCCCCC
Confidence 345555544443
No 38
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=20.82 E-value=1.1e+02 Score=19.57 Aligned_cols=20 Identities=30% Similarity=0.569 Sum_probs=11.6
Q ss_pred HHHHHHHHhhhheEEEeCCC
Q 047365 169 LGFIFGVLQMILYVIYKNPN 188 (243)
Q Consensus 169 ~G~~l~~~ql~l~~~y~~~~ 188 (243)
+|.+.-..-..+|++|+++|
T Consensus 21 V~vI~~vl~~~l~~~~rR~k 40 (40)
T PF08693_consen 21 VGVIIIVLGAFLFFWYRRKK 40 (40)
T ss_pred hHHHHHHHHHHhheEEeccC
Confidence 34444444556677787764
Done!