Query 047365
Match_columns 243
No_of_seqs 224 out of 1433
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 18:16:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047365.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047365hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vf6_A PALS-1, PALS1-associate 22.1 38 0.0013 24.0 1.6 19 223-241 30-48 (83)
2 3plt_A Sphingolipid long chain 14.2 1E+02 0.0034 26.0 2.7 34 208-241 194-227 (234)
3 4h62_V Mediator of RNA polymer 8.5 1.2E+02 0.0042 16.8 0.9 10 229-238 15-24 (31)
4 2nr1_A NR1 M2, M2; receptor, s 8.5 1.2E+02 0.0041 16.8 0.8 14 146-159 9-22 (27)
5 3l1l_A Arginine/agmatine antip 7.3 1.9E+02 0.0066 25.1 2.1 21 170-190 413-433 (445)
6 3qrx_B Melittin; calcium-bindi 6.7 2.4E+02 0.008 15.3 1.4 16 8-23 9-24 (26)
7 2k9p_A Pheromone alpha factor 6.2 5.9E+02 0.02 17.5 3.8 14 55-68 50-63 (80)
8 3bkd_A Transmembrane domain of 5.5 88 0.003 17.0 -0.7 14 159-172 2-15 (26)
9 4djk_A Probable glutamate/gamm 5.2 3.3E+02 0.011 24.1 2.5 8 149-156 420-427 (511)
10 1vq8_Q 50S ribosomal protein L 5.1 3.2E+02 0.011 19.6 1.9 23 202-224 37-59 (96)
No 1
>1vf6_A PALS-1, PALS1-associated tight junction protein; L27 domain, heterodimer, four-helical bundle, coiled-coil, hydrophobic packing interactions; 2.10A {Homo sapiens} SCOP: a.194.1.1
Probab=22.06 E-value=38 Score=23.99 Aligned_cols=19 Identities=37% Similarity=0.454 Sum_probs=16.8
Q ss_pred hhhHHhhhhhhhhHhhhhh
Q 047365 223 ALYTKQQTLLNNCILALQT 241 (243)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~ 241 (243)
-..+-+|+||-|=||++|+
T Consensus 30 ~lk~~LqSPLF~qILtlQq 48 (83)
T 1vf6_A 30 MFYETLKSPLFNQILTLQQ 48 (83)
T ss_dssp HHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHHH
Confidence 4578899999999999996
No 2
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=14.19 E-value=1e+02 Score=26.05 Aligned_cols=34 Identities=21% Similarity=0.288 Sum_probs=29.6
Q ss_pred EEecCCCCCCCcccchhhHHhhhhhhhhHhhhhh
Q 047365 208 VKLSTMRHPGPRAAYALYTKQQTLLNNCILALQT 241 (243)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (243)
...+|++.|+..+.|.+++.-...++.|--+|+.
T Consensus 194 ldd~pv~PG~~r~~Y~g~~~t~qi~~dAe~~L~~ 227 (234)
T 3plt_A 194 LDDSPVTPGEARPAYDGYEASRQIIMDAESALES 227 (234)
T ss_dssp SCCCCCCSSSCCCCCCCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHh
Confidence 4578899999999999999999999998877754
No 3
>4h62_V Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=8.54 E-value=1.2e+02 Score=16.80 Aligned_cols=10 Identities=50% Similarity=0.963 Sum_probs=7.6
Q ss_pred hhhhhhhHhh
Q 047365 229 QTLLNNCILA 238 (243)
Q Consensus 229 ~~~~~~~~~~ 238 (243)
..+|.|||-.
T Consensus 15 eelldnciet 24 (31)
T 4h62_V 15 EELLDNCIET 24 (31)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4689999854
No 4
>2nr1_A NR1 M2, M2; receptor, signal, postsynaptic membrane; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=8.53 E-value=1.2e+02 Score=16.80 Aligned_cols=14 Identities=29% Similarity=1.004 Sum_probs=10.2
Q ss_pred hhhHHHHHhhhccc
Q 047365 146 IGAVAWFFYGLLIK 159 (243)
Q Consensus 146 ~n~~~W~~YG~l~~ 159 (243)
+.+.+|+..|.+.+
T Consensus 9 l~aa~wF~WGvlln 22 (27)
T 2nr1_A 9 LSSAMWFSWGVLLN 22 (27)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhhhHHHhhHhhee
Confidence 45678999887653
No 5
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=7.26 E-value=1.9e+02 Score=25.14 Aligned_cols=21 Identities=19% Similarity=0.282 Sum_probs=10.4
Q ss_pred HHHHHHHhhhheEEEeCCCcc
Q 047365 170 GFIFGVLQMILYVIYKNPNKK 190 (243)
Q Consensus 170 G~~l~~~ql~l~~~y~~~~~~ 190 (243)
|...-..-+.+|+++++++++
T Consensus 413 ~~~~~~~g~~~y~~~~~~~~~ 433 (445)
T 3l1l_A 413 SFVTLMVITAMYALNYNRLHK 433 (445)
T ss_dssp HHHHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHHHHHHHHhhhccc
Confidence 444444444556665555443
No 6
>3qrx_B Melittin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 1bh1_A 2mlt_A
Probab=6.72 E-value=2.4e+02 Score=15.26 Aligned_cols=16 Identities=19% Similarity=0.314 Sum_probs=12.7
Q ss_pred hhccHHHHHHHHHhcC
Q 047365 8 CLAPMPTFYKIYKKKS 23 (243)
Q Consensus 8 ~lSplp~i~~I~k~ks 23 (243)
....+|.+..++|+|.
T Consensus 9 La~~LP~liSWiK~kr 24 (26)
T 3qrx_B 9 LTTGLPALISWIKRKR 24 (26)
T ss_pred HHccchHHHHHHHHHh
Confidence 4567899999999875
No 7
>2k9p_A Pheromone alpha factor receptor; GPCR, micelle, structurral biology, fragment, G-protein COUP receptor, glycoprotein, membrane; NMR {Saccharomyces cerevisiae}
Probab=6.18 E-value=5.9e+02 Score=17.49 Aligned_cols=14 Identities=14% Similarity=0.323 Sum_probs=5.4
Q ss_pred eeehhhHHHHHHHH
Q 047365 55 LMTINTFCCVMQTI 68 (243)
Q Consensus 55 v~~~N~~G~~l~~~ 68 (243)
++..|...+++..+
T Consensus 50 iF~lN~~~L~l~ii 63 (80)
T 2k9p_A 50 IFIINQVSLFLIIL 63 (80)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH
Confidence 33334333333333
No 8
>3bkd_A Transmembrane domain of matrix protein M2; proton channel, M2TM, influenza A virus M2 protein, viral PR membrane protein; HET: MSE BOG; 2.05A {Synthetic} SCOP: j.35.1.1 PDB: 1mp6_A 1nyj_A 2kqt_A* 2kad_A* 3c9j_A*
Probab=5.45 E-value=88 Score=17.01 Aligned_cols=14 Identities=21% Similarity=0.470 Sum_probs=10.0
Q ss_pred cCeeeEechhHHHH
Q 047365 159 KDLNVAIPNVLGFI 172 (243)
Q Consensus 159 ~d~~i~~~N~~G~~ 172 (243)
.|..++.+|++|.+
T Consensus 2 sDplv~aa~iiGil 15 (26)
T 3bkd_A 2 SDPLVVAASIMGIL 15 (26)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHH
Confidence 46677778888864
No 9
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=5.25 E-value=3.3e+02 Score=24.13 Aligned_cols=8 Identities=0% Similarity=-0.097 Sum_probs=3.3
Q ss_pred HHHHHhhh
Q 047365 149 VAWFFYGL 156 (243)
Q Consensus 149 ~~W~~YG~ 156 (243)
.+|..+..
T Consensus 420 ~~~~~~~~ 427 (511)
T 4djk_A 420 LLTSIMAF 427 (511)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34444433
No 10
>1vq8_Q 50S ribosomal protein L21E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_Q* 1vq5_Q* 1vq6_Q* 1vq7_Q* 1s72_Q* 1vq9_Q* 1vqk_Q* 1vql_Q* 1vqm_Q* 1vqn_Q* 1vqo_Q* 1vqp_Q* 1yhq_Q* 1yi2_Q* 1yij_Q* 1yit_Q* 1yj9_Q* 1yjn_Q* 1yjw_Q* 2otj_Q* ...
Probab=5.10 E-value=3.2e+02 Score=19.65 Aligned_cols=23 Identities=4% Similarity=-0.087 Sum_probs=0.0
Q ss_pred cceeEEEEecCCCCCCCcccchh
Q 047365 202 EHVVDVVKLSTMRHPGPRAAYAL 224 (243)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~ 224 (243)
+..+||...++.+.+-++.+|.+
T Consensus 37 Gd~VdIk~~~svqKGmPhk~yHG 59 (96)
T 1vq8_Q 37 GEKVHLKIDPSVPNGRFHPRFDG 59 (96)
T ss_dssp TCEEEECCCTTCCSSCCCGGGTT
T ss_pred CCEEEEEecCCccCCCCcccCCC
Done!