Query 047365
Match_columns 243
No_of_seqs 224 out of 1433
Neff 6.8
Searched_HMMs 13730
Date Mon Mar 25 18:16:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047365.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/047365hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vf6a_ a.194.1.1 (A:) Associa 15.8 31 0.0023 21.1 1.6 19 223-241 26-44 (58)
2 d1vqoq1 b.34.5.1 (Q:1-95) Ribo 9.0 54 0.004 22.0 1.2 27 201-227 35-61 (95)
3 d2axtt1 f.23.34.1 (T:1-30) Pho 8.1 1.4E+02 0.011 15.1 2.4 19 60-78 9-27 (30)
4 d1rzhh2 f.23.10.1 (H:11-35) Ph 6.1 1.3E+02 0.0092 15.0 1.4 11 37-47 3-13 (26)
5 d1xioa_ f.13.1.1 (A:) Sensory 4.7 6E+02 0.043 18.4 7.7 16 142-157 167-182 (226)
6 d2nn6h3 d.51.1.1 (H:168-293) R 4.6 1.2E+02 0.0091 21.0 1.2 15 229-243 67-81 (126)
7 d2ezwa1 a.31.1.1 (A:12-61) cAM 3.1 2.3E+02 0.016 16.5 1.2 13 227-239 13-25 (50)
8 d1ijdb_ f.3.1.1 (B:) Light-har 3.0 4.6E+02 0.033 14.2 2.6 15 103-117 21-35 (40)
9 d2axtm1 f.23.35.1 (M:1-36) Pho 2.9 2.7E+02 0.02 14.9 1.3 11 59-69 4-14 (36)
10 d1rkla_ f.23.30.1 (A:) Oligosa 2.9 1.4E+02 0.01 15.9 0.0 18 167-184 8-25 (36)
No 1
>d1vf6a_ a.194.1.1 (A:) Associated tight junction protein Pals-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.79 E-value=31 Score=21.08 Aligned_cols=19 Identities=37% Similarity=0.454 Sum_probs=16.1
Q ss_pred hhhHHhhhhhhhhHhhhhh
Q 047365 223 ALYTKQQTLLNNCILALQT 241 (243)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~ 241 (243)
.-.+-+||||-+=|+++|+
T Consensus 26 ~lk~~LqSPLF~qiL~lQ~ 44 (58)
T d1vf6a_ 26 MFYETLKSPLFNQILTLQQ 44 (58)
T ss_dssp HHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHHH
Confidence 3457789999999999996
No 2
>d1vqoq1 b.34.5.1 (Q:1-95) Ribosomal proteins L21e {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=9.04 E-value=54 Score=22.04 Aligned_cols=27 Identities=7% Similarity=-0.071 Sum_probs=22.9
Q ss_pred ccceeEEEEecCCCCCCCcccchhhHH
Q 047365 201 SEHVVDVVKLSTMRHPGPRAAYALYTK 227 (243)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (243)
.++.+||..++..+.+-++.+|.+.++
T Consensus 35 ~GD~V~I~idpsv~kGmPh~~yhGkTG 61 (95)
T d1vqoq1 35 DGEKVHLKIDPSVPNGRFHPRFDGQTG 61 (95)
T ss_dssp TTCEEEECCCTTCCSSCCCGGGTTCEE
T ss_pred CCCEEEEEecCCeecCccceeecCCce
Confidence 447899999999999999999998653
No 3
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=8.13 E-value=1.4e+02 Score=15.11 Aligned_cols=19 Identities=21% Similarity=0.742 Sum_probs=12.7
Q ss_pred hHHHHHHHHHHHhhhhccC
Q 047365 60 TFCCVMQTIYIAVYVFYAP 78 (243)
Q Consensus 60 ~~G~~l~~~y~~v~~~y~~ 78 (243)
.+.++++.++..+|++-.|
T Consensus 9 ifac~i~lfffaiffrepp 27 (30)
T d2axtt1 9 IFACIIALFFFAIFFREPP 27 (30)
T ss_dssp HHHHHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHHHhcCCC
Confidence 4667777777777766443
No 4
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=6.07 E-value=1.3e+02 Score=15.03 Aligned_cols=11 Identities=18% Similarity=0.446 Sum_probs=5.9
Q ss_pred HHHHHHHHhhc
Q 047365 37 FSAMIWIYYAL 47 (243)
Q Consensus 37 ~n~~lW~~YG~ 47 (243)
.+..+|+.|+.
T Consensus 3 aslaiw~fw~f 13 (26)
T d1rzhh2 3 ASLAIYSFWIF 13 (26)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34456666553
No 5
>d1xioa_ f.13.1.1 (A:) Sensory rhodopsin {Anabaena sp. PCC 7120 [TaxId: 103690]}
Probab=4.68 E-value=6e+02 Score=18.36 Aligned_cols=16 Identities=25% Similarity=0.432 Sum_probs=11.2
Q ss_pred HHHHhhhHHHHHhhhc
Q 047365 142 FFLTIGAVAWFFYGLL 157 (243)
Q Consensus 142 ~~~~~n~~~W~~YG~l 157 (243)
....+..+.|..|++.
T Consensus 167 ~l~~~~~v~W~~YPi~ 182 (226)
T d1xioa_ 167 KLVTYFTVLWIGYPIV 182 (226)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445556799999875
No 6
>d2nn6h3 d.51.1.1 (H:168-293) Ribosomal RNA-processing protein 4, RRP4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.58 E-value=1.2e+02 Score=21.02 Aligned_cols=15 Identities=40% Similarity=0.541 Sum_probs=11.9
Q ss_pred hhhhhhhHhhhhhcC
Q 047365 229 QTLLNNCILALQTCF 243 (243)
Q Consensus 229 ~~~~~~~~~~~~~~~ 243 (243)
=+-+.|||.+|..|.
T Consensus 67 IaRvaNcI~~La~~~ 81 (126)
T d2nn6h3 67 ISRLRNCIISLVTQR 81 (126)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCC
Confidence 356889999998774
No 7
>d2ezwa1 a.31.1.1 (A:12-61) cAMP-dependent protein kinase type I-alpha regulatory subunit {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.12 E-value=2.3e+02 Score=16.46 Aligned_cols=13 Identities=38% Similarity=0.588 Sum_probs=10.3
Q ss_pred HhhhhhhhhHhhh
Q 047365 227 KQQTLLNNCILAL 239 (243)
Q Consensus 227 ~~~~~~~~~~~~~ 239 (243)
..|.+|..||.-|
T Consensus 13 niq~lLKdcIVqL 25 (50)
T d2ezwa1 13 NIQALLKDSIVQL 25 (50)
T ss_dssp SSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 4688999999755
No 8
>d1ijdb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodoblastus acidophilus [TaxId: 1074]}
Probab=2.96 E-value=4.6e+02 Score=14.23 Aligned_cols=15 Identities=13% Similarity=0.210 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHh
Q 047365 103 KILGYICMTFALSVF 117 (243)
Q Consensus 103 ~~lG~ia~~~~i~~f 117 (243)
.++|.++.+..++.|
T Consensus 21 RvF~~iA~~AH~La~ 35 (40)
T d1ijdb_ 21 RVFLVIAAIAHFLAF 35 (40)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 466777777766665
No 9
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=2.95 E-value=2.7e+02 Score=14.92 Aligned_cols=11 Identities=9% Similarity=0.401 Sum_probs=5.3
Q ss_pred hhHHHHHHHHH
Q 047365 59 NTFCCVMQTIY 69 (243)
Q Consensus 59 N~~G~~l~~~y 69 (243)
|..|++....+
T Consensus 4 N~Lg~iAt~LF 14 (36)
T d2axtm1 4 NQLGLIATALF 14 (36)
T ss_dssp CTTHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 45555544433
No 10
>d1rkla_ f.23.30.1 (A:) Oligosaccharyltransferase subunit ost4p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=2.93 E-value=1.4e+02 Score=15.92 Aligned_cols=18 Identities=50% Similarity=0.877 Sum_probs=0.0
Q ss_pred hhHHHHHHHHhhhheEEE
Q 047365 167 NVLGFIFGVLQMILYVIY 184 (243)
Q Consensus 167 N~~G~~l~~~ql~l~~~y 184 (243)
|.+...+++..+.+..+|
T Consensus 8 n~~~i~fgi~mmtliviy 25 (36)
T d1rkla_ 8 NSLAITFGIVMMTLIVIY 25 (36)
T ss_dssp GHHHHHHHHHHHHHHHHH
T ss_pred CcEEeehhHHHHHHHHHH
Done!