BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047368
(365 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 183 bits (464), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 104/344 (30%), Positives = 184/344 (53%), Gaps = 22/344 (6%)
Query: 24 VPSVQEIVRNDSLCVPERYIQERQNRPD----YHSEVSYASSEIPVINMSLLANGDKDEL 79
V V+ + ++ + +P+ YI+ ++ + E ++P I++ + + D+
Sbjct: 4 VERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIR 63
Query: 80 RN----FDIACKEWGFFQITNHGIAETVIHNMKEAIAAFFQLPFDEKKKYTMPAND---- 131
N A +WG + NHGI ++ +K+A FF L +EK+KY AND
Sbjct: 64 ENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKY---ANDQATG 120
Query: 132 -VQGYGQGYVVSEQQKLDWSDVLFLVTLPPSVRNLKLWPVALPGFKESIDQYSTEIRKVT 190
+QGYG + +L+W D F + P R+L +WP + E+ +Y+ +R +
Sbjct: 121 KIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLA 180
Query: 191 EEIFAKLSLLMGMDTDGLKMLHGEMKQ---ATRMNYYPTCSRPELVLGVSPHSDASTITL 247
++F LS+ +G++ D L+ G +++ ++NYYP C +PEL LGV H+D S +T
Sbjct: 181 TKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTF 240
Query: 248 LLQDDKITGLQIKHKDSWIPVKPIPDAIVVNIGDVAEVLSNGLYKSVEHRAVTNEKKARM 307
+L + + GLQ+ ++ W+ K +PD+IV++IGD E+LSNG YKS+ HR + N++K R+
Sbjct: 241 ILHN-MVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRI 299
Query: 308 SVATFV-IPSEEVEIGPLESMVDDKQFPRMYRNMKYVDYLRHTL 350
S A F P +++ + PL MV + P + + ++ H L
Sbjct: 300 SWAVFCEPPKDKIVLKPLPEMVSVES-PAKFPPRTFAQHIEHKL 342
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 183 bits (464), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 104/344 (30%), Positives = 184/344 (53%), Gaps = 22/344 (6%)
Query: 24 VPSVQEIVRNDSLCVPERYIQERQNRPD----YHSEVSYASSEIPVINMSLLANGDKDEL 79
V V+ + ++ + +P+ YI+ ++ + E ++P I++ + + D+
Sbjct: 3 VERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIR 62
Query: 80 RN----FDIACKEWGFFQITNHGIAETVIHNMKEAIAAFFQLPFDEKKKYTMPAND---- 131
N A +WG + NHGI ++ +K+A FF L +EK+KY AND
Sbjct: 63 ENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKY---ANDQATG 119
Query: 132 -VQGYGQGYVVSEQQKLDWSDVLFLVTLPPSVRNLKLWPVALPGFKESIDQYSTEIRKVT 190
+QGYG + +L+W D F + P R+L +WP + E+ +Y+ +R +
Sbjct: 120 KIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLA 179
Query: 191 EEIFAKLSLLMGMDTDGLKMLHGEMKQ---ATRMNYYPTCSRPELVLGVSPHSDASTITL 247
++F LS+ +G++ D L+ G +++ ++NYYP C +PEL LGV H+D S +T
Sbjct: 180 TKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTF 239
Query: 248 LLQDDKITGLQIKHKDSWIPVKPIPDAIVVNIGDVAEVLSNGLYKSVEHRAVTNEKKARM 307
+L + + GLQ+ ++ W+ K +PD+IV++IGD E+LSNG YKS+ HR + N++K R+
Sbjct: 240 ILHN-MVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRI 298
Query: 308 SVATFV-IPSEEVEIGPLESMVDDKQFPRMYRNMKYVDYLRHTL 350
S A F P +++ + PL MV + P + + ++ H L
Sbjct: 299 SWAVFCEPPKDKIVLKPLPEMVSVES-PAKFPPRTFAQHIEHKL 341
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 179 bits (453), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 103/344 (29%), Positives = 181/344 (52%), Gaps = 22/344 (6%)
Query: 24 VPSVQEIVRNDSLCVPERYIQERQNRPD----YHSEVSYASSEIPVINMSLLANGDKDEL 79
V V+ + ++ + +P+ YI+ ++ + E ++P I++ + + D+
Sbjct: 4 VERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIR 63
Query: 80 RN----FDIACKEWGFFQITNHGIAETVIHNMKEAIAAFFQLPFDEKKKYTMPAND---- 131
N A +WG + NHGI + +K+A FF L +EK+KY AND
Sbjct: 64 ENCIEELKKASLDWGVXHLINHGIPADLXERVKKAGEEFFSLSVEEKEKY---ANDQATG 120
Query: 132 -VQGYGQGYVVSEQQKLDWSDVLFLVTLPPSVRNLKLWPVALPGFKESIDQYSTEIRKVT 190
+QGYG + +L+W D F + P R+L +WP + E+ +Y+ +R +
Sbjct: 121 KIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLA 180
Query: 191 EEIFAKLSLLMGMDTDGLKMLHGEMKQ---ATRMNYYPTCSRPELVLGVSPHSDASTITL 247
++F LS+ +G++ D L+ G +++ ++NYYP C +PEL LGV H+D S +T
Sbjct: 181 TKVFKALSVGLGLEPDRLEKEVGGLEELLLQXKINYYPKCPQPELALGVEAHTDVSALTF 240
Query: 248 LLQDDKITGLQIKHKDSWIPVKPIPDAIVVNIGDVAEVLSNGLYKSVEHRAVTNEKKARM 307
+L + + GLQ+ ++ W+ K +PD+IV +IGD E+LSNG YKS+ HR + N++K R+
Sbjct: 241 ILHN-XVPGLQLFYEGKWVTAKCVPDSIVXHIGDTLEILSNGKYKSILHRGLVNKEKVRI 299
Query: 308 SVATFV-IPSEEVEIGPLESMVDDKQFPRMYRNMKYVDYLRHTL 350
S A F P +++ + PL V + P + + ++ H L
Sbjct: 300 SWAVFCEPPKDKIVLKPLPEXV-SVESPAKFPPRTFAQHIEHKL 342
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 147 bits (372), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 84/268 (31%), Positives = 142/268 (52%), Gaps = 12/268 (4%)
Query: 85 ACKEWGFFQITNHGIAETVIHNMKEAIAAFFQLPFDEKKKYTMPANDVQGYGQGYVVSEQ 144
AC+ WGFF++ NHGI V +++ ++ +++ K + + ++G V +E
Sbjct: 27 ACENWGFFELVNHGIPREVXDTVEKXTKGHYKKCXEQRFKELVASKALEG-----VQAEV 81
Query: 145 QKLDWSDVLFLVTLPPSVRNLKLWPVALPGFKESIDQYSTEIRKVTEEIFAKLSLLMGMD 204
DW FL LP + N+ P ++E ++ + K+ EE+ L +G++
Sbjct: 82 TDXDWESTFFLKHLP--ISNISEVPDLDEEYREVXRDFAKRLEKLAEELLDLLCENLGLE 139
Query: 205 TDGLK-MLHGEMKQ--ATRMNYYPTCSRPELVLGVSPHSDASTITLLLQDDKITGLQIKH 261
LK +G T+++ YP C +P+L+ G+ H+DA I LL QDDK++GLQ+
Sbjct: 140 KGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLK 199
Query: 262 KDSWIPVKPIPDAIVVNIGDVAEVLSNGLYKSVEHRAVTNEKKARMSVATFVIPSEEVEI 321
WI V P +IVVN+GD EV++NG YKSV HR + + AR S+A+F P + I
Sbjct: 200 DGQWIDVPPXRHSIVVNLGDQLEVITNGKYKSVXHRVIAQKDGARXSLASFYNPGSDAVI 259
Query: 322 GPLESMVDD--KQFPRMYRNMKYVDYLR 347
P ++V+ ++ ++Y + DY +
Sbjct: 260 YPAPALVEKEAEENKQVYPKFVFDDYXK 287
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 75/309 (24%), Positives = 139/309 (44%), Gaps = 22/309 (7%)
Query: 59 ASSEIPVINMSLLANGDKDELRNFDIACKEWGFFQITNHGIAETVIHNMKEAIAAFFQLP 118
++S I ++ SL A + + + +GF ++++ + + I ++ AFF LP
Sbjct: 3 STSAIDPVSFSLYAKDFTRFAQELGASFERYGFAVLSDYDLDQARIDAAVDSAKAFFALP 62
Query: 119 FDEKKKYTMPANDVQGYGQGYV---VSEQQKLDWSDVLFL----VTLPPSVRNL-----K 166
+ KK+Y V+G +GY+ V + D D+ LPP R
Sbjct: 63 VETKKQYA----GVKGGARGYIPFGVETAKGADHYDLKEFWHXGRDLPPGHRFRAHXADN 118
Query: 167 LWPVALPGFKESIDQYSTEIRKVTEEIFAKLSLLMGMDTDGLKMLHGEMKQATRMNYYPT 226
+WP +P FK + + ++ ++ + ++ D K + R+ +YP
Sbjct: 119 VWPAEIPAFKHDVSWLYNSLDGXGGKVLEAIATYLKLERDFFKPTVQDGNSVLRLLHYPP 178
Query: 227 CSRPELVLGVSPHSDASTITLLLQDDKITGLQIKHKDS-WIPVKPIPDAIVVNIGDVAEV 285
+ + H D +TITLLL ++ GL++ +D W+P+ P P +V+NIGD E
Sbjct: 179 IPKDATGVRAGAHGDINTITLLLGAEE-GGLEVLDRDGQWLPINPPPGCLVINIGDXLER 237
Query: 286 LSNGLYKSVEHRAVT--NEKKA--RMSVATFVIPSEEVEIGPLESMVDDKQFPRMYRNMK 341
L+N + S HR V E++ R S F+ + + EI L++ V + R ++
Sbjct: 238 LTNNVLPSTVHRVVNPPPERRGVPRYSTPFFLHFASDYEIKTLQNCVTAENPDRYPESIT 297
Query: 342 YVDYLRHTL 350
++L+ L
Sbjct: 298 ADEFLQQRL 306
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/261 (23%), Positives = 116/261 (44%), Gaps = 33/261 (12%)
Query: 77 DELRNFDIACKEWGFFQITNHGIAETVIHNMKEAIAAFF------QLPFDEKKKYTMPAN 130
D + F + +E GF ++NH I + ++ + AFF + F+ +
Sbjct: 13 DSAKRFVESLRETGFGVLSNHPIDKELVERIYTEWQAFFNSEAKNEFXFNRETHDGFFPA 72
Query: 131 DVQGYGQGYVVSEQQKLDWSDVLFLVTLPPSVRNLKLWPVALPGFKESIDQYSTEIRKVT 190
+ +G+ V + + ++ V +P S+R + + E + ++E+ +
Sbjct: 73 SISETAKGHTVKDIK--EYYHVYPWGRIPDSLR------ANILAYYEKANTLASELLEWI 124
Query: 191 E-----EIFAKLSLLMGMDTDGLKMLHGEMKQATRMNYYP--TCSRPELVLGVSPHSDAS 243
E EI AK S+ + + + K R+ +YP T + + H D +
Sbjct: 125 ETYSPDEIKAKFSIPLP------EXIANSHKTLLRILHYPPXTGDEEXGAIRAAAHEDIN 178
Query: 244 TITLLLQDDKITGLQIKHKD-SWIPVKPIPDAIVVNIGDVAEVLSNGLYKSVEHRAV--- 299
IT+L ++ GLQ+K KD SW+ V I++NIGD + S+G + S HR +
Sbjct: 179 LITVLPTANE-PGLQVKAKDGSWLDVPSDFGNIIINIGDXLQEASDGYFPSTSHRVINPE 237
Query: 300 -TNEKKARMSVATFVIPSEEV 319
T++ K+R+S+ F+ P V
Sbjct: 238 GTDKTKSRISLPLFLHPHPSV 258
>pdb|1W28|A Chain A, Conformational Flexibility Of The C-Terminus With
Implications For Substrate Binding And Catalysis In A
New Crystal Form Of Deacetoxycephalosporin C Synthase
pdb|1W2A|X Chain X, Deacetoxycephalosporin C Synthase (With His-Tag) Complexed
With Fe(Ii) And Ethylene Glycol
pdb|1W2N|A Chain A, Deacetoxycephalosporin C Synthase (With A N-Terminal His-
Tag) In Complex With Fe(Ii) And Ampicillin
pdb|1W2O|A Chain A, Deacetoxycephalosporin C Synthase (With A N-Terminal His-
Tag) In Complex With Fe(Ii) And Deacetoxycephalosporin C
Length = 331
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 65/289 (22%), Positives = 121/289 (41%), Gaps = 44/289 (15%)
Query: 57 SYASSEIPVINMSLLANG-DKDELRNFDIACKEWGFFQITNHGIAETVIHNMKEAIAAFF 115
S+ + +P +++ L G +DE R ++ G F +T+ G+ +T + + K+ + FF
Sbjct: 19 SHMDTTVPTFSLAELQQGLHQDEFRR---CLRDKGLFYLTDCGLTDTELKSAKDLVIDFF 75
Query: 116 QLPFD-EKKKYTMPANDVQGYGQGYVVSEQQKL----------DWSDVLFLVT---LPPS 161
+ + EK+ T P ++ +G+ E + D+S + T L PS
Sbjct: 76 EHGSEAEKRAVTSPVPTMR---RGFTGLESESTAQITNTGSYSDYSMCYSMGTADNLFPS 132
Query: 162 VRNLKLWPVALPGFKESIDQYSTEIRKVTEEIFAKLSLLMGMDTDGLKMLHGEMKQATRM 221
++W + D+ T R V E+ G + DG + + R
Sbjct: 133 GDFERIW-------TQYFDRQYTASRAVAREVLRA----TGTEPDGGVEAFLDCEPLLRF 181
Query: 222 NYYPTC----SRPELVLGVSPHSDASTITLLLQDDKITG---LQIKHKDSWIPVKPIPDA 274
Y+P S E L ++PH D S +TL+ Q G LQ + ++ + PDA
Sbjct: 182 RYFPQVPEHRSAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPYRPDA 241
Query: 275 IVVNIGDVAEVLSNGLYKSVEHRAVTNEK-----KARMSVATFVIPSEE 318
++V G +A +++ G K+ H + +R S F+ P+ +
Sbjct: 242 VLVFCGAIATLVTGGQVKAPRHHVAAPRRDQIAGSSRTSSVFFLRPNAD 290
>pdb|1E5H|A Chain A, Delta-R307a Deacetoxycephalosporin C Synthase Complexed
With Succinate And Carbon Dioxide
Length = 308
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/282 (21%), Positives = 116/282 (41%), Gaps = 38/282 (13%)
Query: 61 SEIPVINMSLLANG-DKDELRNFDIACKEWGFFQITNHGIAETVIHNMKEAIAAFFQLPF 119
+ +P +++ L G +DE R ++ G F +T+ G+ +T + + K+ + FF+
Sbjct: 3 TTVPTFSLAELQQGLHQDEFRR---CLRDKGLFYLTDCGLTDTELKSAKDIVIDFFEHGS 59
Query: 120 D-EKKKYTMPA-------NDVQGYGQGYVVSEQQKLDWSDVLFLVT---LPPSVRNLKLW 168
+ EK+ T P ++ + + D+S + T L PS ++W
Sbjct: 60 EAEKRAVTSPVPTMRRGFTGLESESTAQITNTGSYSDYSMCYSMGTADNLFPSGDFERIW 119
Query: 169 PVALPGFKESIDQYSTEIRKVTEEIFAKLSLLMGMDTDGLKMLHGEMKQATRMNYYPTC- 227
+ D+ T R V E+ G + DG + + R Y+P
Sbjct: 120 -------TQYFDRQYTASRAVAREVLRA----TGTEPDGGVEAFLDCEPLLRFRYFPQVP 168
Query: 228 ---SRPELVLGVSPHSDASTITLLLQDDKITG---LQIKHKDSWIPVKPIPDAIVVNIGD 281
S E L ++PH D S +TL+ Q G LQ + ++ + PDA++V G
Sbjct: 169 EHRSAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPYRPDAVLVFCGA 228
Query: 282 VAEVLSNGLYKSVEHRAVTNEK-----KARMSVATFVIPSEE 318
+A +++ G K+ H + +R S F+ P+ +
Sbjct: 229 IATLVTGGQVKAPRHHVAAPRRDQIAGSSRTSSVFFLRPNAD 270
>pdb|1UNB|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
2-Oxoglutarate And Ampicillin
pdb|1UO9|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Succinate
pdb|1UOB|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
2-Oxoglutarate And Penicillin G
pdb|1UOF|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
Penicillin G
pdb|1UOG|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
Deacetoxycephalosporin C
pdb|1DCS|A Chain A, Deacetoxycephalosporin C Synthase From S. Clavuligerus
pdb|1RXF|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Fe(Ii)
pdb|1RXG|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Fe(Ii)
And 2- Oxoglutarate
pdb|2JB8|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
5-hydroxy- 4-keto Valeric Acid
Length = 311
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/282 (21%), Positives = 116/282 (41%), Gaps = 38/282 (13%)
Query: 61 SEIPVINMSLLANG-DKDELRNFDIACKEWGFFQITNHGIAETVIHNMKEAIAAFFQLPF 119
+ +P +++ L G +DE R ++ G F +T+ G+ +T + + K+ + FF+
Sbjct: 3 TTVPTFSLAELQQGLHQDEFRR---CLRDKGLFYLTDCGLTDTELKSAKDLVIDFFEHGS 59
Query: 120 D-EKKKYTMPA-------NDVQGYGQGYVVSEQQKLDWSDVLFLVT---LPPSVRNLKLW 168
+ EK+ T P ++ + + D+S + T L PS ++W
Sbjct: 60 EAEKRAVTSPVPTMRRGFTGLESESTAQITNTGSYSDYSMCYSMGTADNLFPSGDFERIW 119
Query: 169 PVALPGFKESIDQYSTEIRKVTEEIFAKLSLLMGMDTDGLKMLHGEMKQATRMNYYPTC- 227
+ D+ T R V E+ G + DG + + R Y+P
Sbjct: 120 -------TQYFDRQYTASRAVAREVLRA----TGTEPDGGVEAFLDCEPLLRFRYFPQVP 168
Query: 228 ---SRPELVLGVSPHSDASTITLLLQDDKITG---LQIKHKDSWIPVKPIPDAIVVNIGD 281
S E L ++PH D S +TL+ Q G LQ + ++ + PDA++V G
Sbjct: 169 EHRSAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPYRPDAVLVFCGA 228
Query: 282 VAEVLSNGLYKSVEHRAVTNEK-----KARMSVATFVIPSEE 318
+A +++ G K+ H + +R S F+ P+ +
Sbjct: 229 IATLVTGGQVKAPRHHVAAPRRDQIAGSSRTSSVFFLRPNAD 270
>pdb|1E5I|A Chain A, Delta-R306 Deacetoxycephalosporin C Synthase Complexed
With Iron And 2-Oxoglutarate
Length = 306
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/282 (21%), Positives = 116/282 (41%), Gaps = 38/282 (13%)
Query: 61 SEIPVINMSLLANG-DKDELRNFDIACKEWGFFQITNHGIAETVIHNMKEAIAAFFQLPF 119
+ +P +++ L G +DE R ++ G F +T+ G+ +T + + K+ + FF+
Sbjct: 3 TTVPTFSLAELQQGLHQDEFRR---CLRDKGLFYLTDCGLTDTELKSAKDIVIDFFEHGS 59
Query: 120 D-EKKKYTMPA-------NDVQGYGQGYVVSEQQKLDWSDVLFLVT---LPPSVRNLKLW 168
+ EK+ T P ++ + + D+S + T L PS ++W
Sbjct: 60 EAEKRAVTSPVPTMRRGFTGLESESTAQITNTGSYSDYSMCYSMGTADNLFPSGDFERIW 119
Query: 169 PVALPGFKESIDQYSTEIRKVTEEIFAKLSLLMGMDTDGLKMLHGEMKQATRMNYYPTC- 227
+ D+ T R V E+ G + DG + + R Y+P
Sbjct: 120 -------TQYFDRQYTASRAVAREVLRA----TGTEPDGGVEAFLDCEPLLRFRYFPQVP 168
Query: 228 ---SRPELVLGVSPHSDASTITLLLQDDKITG---LQIKHKDSWIPVKPIPDAIVVNIGD 281
S E L ++PH D S +TL+ Q G LQ + ++ + PDA++V G
Sbjct: 169 EHRSAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPYRPDAVLVFCGA 228
Query: 282 VAEVLSNGLYKSVEHRAVTNEK-----KARMSVATFVIPSEE 318
+A +++ G K+ H + +R S F+ P+ +
Sbjct: 229 IATLVTGGQVKAPRHHVAAPRRDQIAGSSRTSSVFFLRPNAD 270
>pdb|1HJF|A Chain A, Alteration Of The Co-Substrate Selectivity Of
Deacetoxycephalosporin C Synthase: The Role Of
Arginine-258
pdb|1HJG|A Chain A, Alteration Of The Co-Substrate Selectivity Of
Deacetoxycephalosporin C Synthase: The Role Of
Arginine-258
Length = 311
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/255 (22%), Positives = 107/255 (41%), Gaps = 33/255 (12%)
Query: 61 SEIPVINMSLLANG-DKDELRNFDIACKEWGFFQITNHGIAETVIHNMKEAIAAFFQLPF 119
+ +P +++ L G +DE R ++ G F +T+ G+ +T + + K+ + FF+
Sbjct: 3 TTVPTFSLAELQQGLHQDEFRR---CLRDKGLFYLTDCGLTDTELKSAKDIVIDFFEHGS 59
Query: 120 D-EKKKYTMPA-------NDVQGYGQGYVVSEQQKLDWSDVLFLVT---LPPSVRNLKLW 168
+ EK+ T P ++ + + D+S + T L PS ++W
Sbjct: 60 EAEKRAVTSPVPTMRRGFTGLESESTAQITNTGSYSDYSMCYSMGTADNLFPSGDFERIW 119
Query: 169 PVALPGFKESIDQYSTEIRKVTEEIFAKLSLLMGMDTDGLKMLHGEMKQATRMNYYPTC- 227
+ D+ T R V E+ G + DG + + R Y+P
Sbjct: 120 -------TQYFDRQYTASRAVAREVLRA----TGTEPDGGVEAFLDCEPLLRFRYFPQVP 168
Query: 228 ---SRPELVLGVSPHSDASTITLLLQDDKITG---LQIKHKDSWIPVKPIPDAIVVNIGD 281
S E L ++PH D S +TL+ Q G LQ + ++ + PDA++V G
Sbjct: 169 EHRSAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPYRPDAVLVFCGA 228
Query: 282 VAEVLSNGLYKSVEH 296
+A +++ G K+ H
Sbjct: 229 IATLVTGGQVKAPRH 243
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 69/341 (20%), Positives = 132/341 (38%), Gaps = 49/341 (14%)
Query: 57 SYASSEIPVINMSLLANGDKDE----LRNFDIACKEWGFFQITNHGI-AETVIHNMKEAI 111
S + + +P I++S L D+ + D A ++ GFF NHGI + + KE
Sbjct: 3 SVSKANVPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGINVQRLSQKTKE-- 60
Query: 112 AAFFQLPFDEKKKYTMPANDVQGYGQ--------GYVVSEQQKLDWSDVLFL-------- 155
F + ++K+ + ++ Y + GY +S K +L
Sbjct: 61 ---FHMSITPEEKWDLA---IRAYNKEHQDQVRAGYYLSIPGKKAVESFCYLNPNFTPDH 114
Query: 156 --VTLPPSVRNLKLWP--VALPGFKESIDQYSTEIRKVTEEIFAKLSLLMGMDTD--GLK 209
+ + +WP PGF++ +QY ++ ++ + +L +G + +
Sbjct: 115 PRIQAKTPTHEVNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARH 174
Query: 210 MLHGEMKQATRMNYYPTCS-RPELVLGVSP---------HSDASTITLLLQDDKITGLQI 259
+ + + YP PE + + H D S IT+L Q + + LQ+
Sbjct: 175 FKPDDTLASVVLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSN-VQNLQV 233
Query: 260 KHKDSWIPVKPIPDAIVVNIGDVAEVLSNGLYKSVEHRAVTNEKKARMSVATFVIPSEEV 319
+ + ++ ++N G L+N YK+ HR V R S+ FV +
Sbjct: 234 ETAAGYQDIEADDTGYLINCGSYMAHLTNNYYKAPIHR-VKWVNAERQSLPFFVNLGYDS 292
Query: 320 EIGPLESMVDDKQFPRMYRNMKYVDYLRHTLERKMDGKAHT 360
I P + + + R + Y DYL++ L ++ T
Sbjct: 293 VIDPFDPREPNGKSDR--EPLSYGDYLQNGLVSLINKNGQT 331
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 68/331 (20%), Positives = 129/331 (38%), Gaps = 49/331 (14%)
Query: 57 SYASSEIPVINMSLLANGDKDE----LRNFDIACKEWGFFQITNHGI-AETVIHNMKEAI 111
S + + +P I++S L D+ + D A ++ GFF NHGI + + KE
Sbjct: 3 SVSKANVPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGINVQRLSQKTKE-- 60
Query: 112 AAFFQLPFDEKKKYTMPANDVQGYGQ--------GYVVSEQQKLDWSDVLFL-------- 155
F + ++K+ + ++ Y + GY +S K +L
Sbjct: 61 ---FHMSITPEEKWDLA---IRAYNKEHQDQVRAGYYLSIPGKKAVESFCYLNPNFTPDH 114
Query: 156 --VTLPPSVRNLKLWP--VALPGFKESIDQYSTEIRKVTEEIFAKLSLLMGMDTD--GLK 209
+ + +WP PGF++ +QY ++ ++ + +L +G + +
Sbjct: 115 PRIQAKTPTHEVNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARH 174
Query: 210 MLHGEMKQATRMNYYPTCS-RPELVLGVSP---------HSDASTITLLLQDDKITGLQI 259
+ + + YP PE + + H D S IT+L Q + + LQ+
Sbjct: 175 FKPDDTLASVVLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSN-VQNLQV 233
Query: 260 KHKDSWIPVKPIPDAIVVNIGDVAEVLSNGLYKSVEHRAVTNEKKARMSVATFVIPSEEV 319
+ + ++ ++N G L+N YK+ HR V R S+ FV +
Sbjct: 234 ETAAGYQDIEADDTGYLINCGSYMAHLTNNYYKAPIHR-VKWVNAERQSLPFFVNLGYDS 292
Query: 320 EIGPLESMVDDKQFPRMYRNMKYVDYLRHTL 350
I P + + + R + Y DYL++ L
Sbjct: 293 VIDPFDPREPNGKSDR--EPLSYGDYLQNGL 321
>pdb|3HGU|A Chain A, Structure Of Phenazine Antibiotic Biosynthesis Protein
pdb|3HGU|B Chain B, Structure Of Phenazine Antibiotic Biosynthesis Protein
Length = 369
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 12/93 (12%)
Query: 114 FFQLPFDEK-KKYTMPAND---VQGYGQGYVVSEQQKLDWSDVLFLVTLPPSVRNLKLWP 169
FF + D + K ++ D V+ Y V Q L D+ FLVT PP +R L P
Sbjct: 164 FFSIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRP 223
Query: 170 VALPGFKESIDQYST--------EIRKVTEEIF 194
+ K+S+ Q + EI+ + EI
Sbjct: 224 EVVLQMKQSLAQITLGGTELNLDEIKFIASEIL 256
>pdb|3L2K|A Chain A, Structure Of Phenazine Antibiotic Biosynthesis Protein
With Substrate
pdb|3L2K|B Chain B, Structure Of Phenazine Antibiotic Biosynthesis Protein
With Substrate
Length = 366
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 12/93 (12%)
Query: 114 FFQLPFDEK-KKYTMPAND---VQGYGQGYVVSEQQKLDWSDVLFLVTLPPSVRNLKLWP 169
FF + D + K ++ D V+ Y V Q L D+ FLVT PP +R L P
Sbjct: 161 FFSIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRP 220
Query: 170 VALPGFKESIDQYST--------EIRKVTEEIF 194
+ K+S+ Q + EI+ + EI
Sbjct: 221 EVVLQMKQSLAQITLGGTELNLDEIKFIASEIL 253
>pdb|3HGV|A Chain A, Structure Of Phenazine Antibiotic Biosynthesis Protein
pdb|3HGV|B Chain B, Structure Of Phenazine Antibiotic Biosynthesis Protein
Length = 369
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 40/95 (42%), Gaps = 12/95 (12%)
Query: 112 AAFFQLPFDEK-KKYTMPAND---VQGYGQGYVVSEQQKLDWSDVLFLVTLPPSVRNLKL 167
FF + D + K ++ D V+ Y V Q L D+ FLVT PP +R L
Sbjct: 162 GXFFSIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLXNQDIRFLVTTPPVLRELLK 221
Query: 168 WPVALPGFKESIDQYST--------EIRKVTEEIF 194
P + K+S+ Q + EI+ + EI
Sbjct: 222 RPEVVLQXKQSLAQITLGGTELNLDEIKFIASEIL 256
>pdb|3K5L|A Chain A, Crystal Structure Of E.Coli Pol Ii-Abasic Dna-Datp Lt(0,
3) Ternary Complex
pdb|3K5M|A Chain A, Crystal Structure Of E.Coli Pol Ii-Abasic Dna-Ddgtp Lt(-2,
2) Ternary Complex
pdb|3K5N|A Chain A, Crystal Structure Of E.Coli Pol Ii-Abasic Dna Binary
Complex
pdb|3K5N|B Chain B, Crystal Structure Of E.Coli Pol Ii-Abasic Dna Binary
Complex
pdb|3K5O|A Chain A, Crystal Structure Of E.Coli Pol Ii
pdb|3K5O|B Chain B, Crystal Structure Of E.Coli Pol Ii
pdb|3K57|A Chain A, Crystal Structure Of E.Coli Pol Ii-Normal Dna-Datp Ternary
Complex
pdb|3K58|A Chain A, Crystal Structure Of E.Coli Pol Ii-Normal Dna-Dttp Ternary
Complex
pdb|3K59|A Chain A, Crystal Structure Of E.Coli Pol Ii-Normal Dna-Dctp Ternary
Complex
pdb|3MAQ|A Chain A, Crystal Structure Of E.coli Pol Ii-normal Dna-dgtp Ternary
Complex
Length = 786
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 323 PLESMVDDKQFPRMYRNMKYVDYLRHTLERKMDGK 357
PL + + R++RN Y +Y+R T+++ M G+
Sbjct: 646 PLAQQFQQELYLRIFRNEPYQEYVRETIDKLMAGE 680
>pdb|1Q8I|A Chain A, Crystal Structure Of Escherichia Coli Dna Polymerase Ii
Length = 783
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 323 PLESMVDDKQFPRMYRNMKYVDYLRHTLERKMDGK 357
PL + + R++RN Y +Y+R T+++ M G+
Sbjct: 643 PLAQQFQQELYLRIFRNEPYQEYVRETIDKLMAGE 677
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,188,801
Number of Sequences: 62578
Number of extensions: 456921
Number of successful extensions: 1109
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1076
Number of HSP's gapped (non-prelim): 19
length of query: 365
length of database: 14,973,337
effective HSP length: 100
effective length of query: 265
effective length of database: 8,715,537
effective search space: 2309617305
effective search space used: 2309617305
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)