Query Summary

Your job contains 1 sequence.

Parameters

Threshold: 0.001

Maximum number of alignments shown: 100

BLAST filter: on

Query Sequence

>047369
MPPKPMRSPPLRRQYFSRFSHASPCLIICVLVLFGAVSLTFHYSHNLVCISPYDPLSRFG
PRLYRSDALESGSGYLDVPWYRKMEKRVEWTTKDLIEVLEEFVPIYETRPVKNNIYGMGF
DQSFGPWFIARWLKLDLMIESGAFKDIQPGFCGFGSIDWGPVMKRHGITNLSRVLIFFYD
HQNELKRLKQALKVGFRHLVFEDNYDTGTGDHYSLRQLCDQSFIR

High Scoring Gene Products

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  047369
        (225 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2094962 - symbol:AT3G16200 "AT3G16200" species...   404  3.3e-71   2


>TAIR|locus:2094962 [details] [associations]
            symbol:AT3G16200 "AT3G16200" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
            "mitochondrion" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0005794 "Golgi apparatus" evidence=IDA]
            [GO:0000394 "RNA splicing, via endonucleolytic cleavage and
            ligation" evidence=RCA] [GO:0009086 "methionine biosynthetic
            process" evidence=RCA] [GO:0005768 "endosome" evidence=IDA]
            [GO:0005802 "trans-Golgi network" evidence=IDA] GO:GO:0005794
            EMBL:CP002686 GO:GO:0005768 EMBL:AB023046 GO:GO:0005802
            IPI:IPI00530025 RefSeq:NP_188241.4 UniGene:At.38930 STRING:Q9LU25
            PRIDE:Q9LU25 EnsemblPlants:AT3G16200.1 GeneID:820866
            KEGG:ath:AT3G16200 TAIR:At3g16200 HOGENOM:HOG000005840
            InParanoid:Q9LU25 OMA:AFKGHST PhylomeDB:Q9LU25
            ProtClustDB:CLSN2681565 Genevestigator:Q9LU25 Uniprot:Q9LU25
        Length = 456

 Score = 404 (147.3 bits), Expect = 3.3e-71, Sum P(2) = 3.3e-71
 Identities = 83/139 (59%), Positives = 99/139 (71%)

Query:    11 LRRQYFSRFSHAS-PCLIICVL--VLFGAVSLTFHYSHNLVCISPYDPLSRFGPRLYRSD 67
             L   + SR  H   PCLI+ +L  VL   +S+ FH SH+ VCIS +DP +R G   +  D
Sbjct:    60 LASNFLSRIGHQWWPCLILALLFLVLLFLISVAFH-SHSFVCISRFDPAARIG--FFGLD 116

Query:    68 ALESGSGYLDVPWYR-KMEKRVEWTTKDLIEVLEEFVPIYETRPVKNNIYGMGFDQSFGP 126
              LES  G L VPW R K  K VEWT+KDL++ LEEFVPIYETRP+KNN+YGMGFD SFG 
Sbjct:   117 GLESDFGALGVPWCRSKHGKEVEWTSKDLLKGLEEFVPIYETRPIKNNMYGMGFDHSFGL 176

Query:   127 WFIARWLKLDLMIESGAFK 145
             WF+ARWLK D+MIESGAFK
Sbjct:   177 WFMARWLKPDMMIESGAFK 195

 Score = 335 (123.0 bits), Expect = 3.3e-71, Sum P(2) = 3.3e-71
 Identities = 59/75 (78%), Positives = 68/75 (90%)

Query:   151 FCGFGSIDWGPVMKRHGITNLSRVLIFFYDHQNELKRLKQALKVGFRHLVFEDNYDTGTG 210
             F  FGS+DW  V+++HGIT+LSRV++FF DHQNELKRLKQALK GFRHL+FEDNYDTGTG
Sbjct:   242 FVDFGSVDWKNVLRKHGITDLSRVIVFFDDHQNELKRLKQALKAGFRHLIFEDNYDTGTG 301

Query:   211 DHYSLRQLCDQSFIR 225
             DHYSLRQ+CDQS IR
Sbjct:   302 DHYSLRQICDQSHIR 316


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.327   0.144   0.471    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      225       225   0.00077  113 3  11 22  0.47    32
                                                     32  0.41    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  607 (65 KB)
  Total size of DFA:  204 KB (2114 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.46u 0.13s 20.59t   Elapsed:  00:00:01
  Total cpu time:  20.46u 0.13s 20.59t   Elapsed:  00:00:01
  Start:  Sat May 11 05:52:50 2013   End:  Sat May 11 05:52:51 2013

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