Query 047369
Match_columns 225
No_of_seqs 18 out of 20
Neff 2.1
Searched_HMMs 46136
Date Fri Mar 29 10:27:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047369.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047369hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04989 CmcI: Cephalosporin h 83.8 0.62 1.3E-05 40.7 1.6 20 129-148 27-46 (206)
2 KOG1663 O-methyltransferase [S 68.2 4.9 0.00011 36.4 2.9 53 91-148 33-87 (237)
3 PF04272 Phospholamban: Phosph 50.2 30 0.00066 25.2 3.8 32 6-38 18-49 (52)
4 PF01596 Methyltransf_3: O-met 46.7 11 0.00024 32.0 1.4 53 92-148 7-59 (205)
5 PLN02589 caffeoyl-CoA O-methyl 45.4 11 0.00023 33.2 1.2 26 123-148 68-93 (247)
6 cd00123 DmpA_OAT DmpA/OAT supe 44.7 23 0.00049 31.6 3.1 41 170-212 197-241 (286)
7 TIGR01294 P_lamban phospholamb 38.3 50 0.0011 24.1 3.4 29 8-37 20-48 (52)
8 COG4122 Predicted O-methyltran 38.1 18 0.00039 31.8 1.4 50 92-148 24-73 (219)
9 PF14048 MBD_C: C-terminal dom 38.0 19 0.00041 28.2 1.4 22 173-194 70-91 (96)
10 TIGR01993 Pyr-5-nucltdase pyri 36.1 46 0.00099 25.9 3.3 36 159-199 147-182 (184)
11 PF00156 Pribosyltran: Phospho 36.0 20 0.00043 26.0 1.1 23 194-220 87-109 (125)
12 PF13704 Glyco_tranf_2_4: Glyc 35.9 43 0.00094 23.6 2.8 12 194-205 41-52 (97)
13 PF10008 DUF2251: Uncharacteri 34.5 12 0.00026 30.1 -0.3 23 195-217 10-32 (97)
14 cd02121 PA_GCPII_like PA_GCPII 33.3 85 0.0018 27.6 4.8 54 153-207 53-108 (220)
15 PF05510 Sarcoglycan_2: Sarcog 32.6 42 0.0009 32.3 3.0 38 5-42 271-310 (386)
16 PF00159 Hormone_3: Pancreatic 30.8 40 0.00087 22.7 1.9 23 1-23 1-28 (36)
17 PTZ00445 p36-lilke protein; Pr 29.4 62 0.0013 29.1 3.3 40 160-204 168-207 (219)
18 smart00309 PAH Pancreatic horm 28.6 52 0.0011 22.3 2.1 23 1-23 1-28 (36)
19 cd06532 Glyco_transf_25 Glycos 28.5 73 0.0016 24.3 3.2 29 176-207 66-95 (128)
20 PF13419 HAD_2: Haloacid dehal 28.3 80 0.0017 22.8 3.2 37 159-200 139-175 (176)
21 PF04443 LuxE: Acyl-protein sy 27.4 47 0.001 30.7 2.3 26 123-148 200-235 (365)
22 COG2179 Predicted hydrolase of 27.2 48 0.001 29.1 2.2 63 130-205 3-72 (175)
23 PRK09456 ?-D-glucose-1-phospha 26.3 99 0.0021 24.6 3.7 59 136-204 129-187 (199)
24 PRK11557 putative DNA-binding 25.3 3.6E+02 0.0079 22.7 7.1 96 97-207 116-214 (278)
25 PF11857 DUF3377: Domain of un 25.3 67 0.0015 24.8 2.5 31 22-52 35-69 (74)
26 cd07972 OBF_DNA_ligase_Arch_Li 24.9 55 0.0012 25.3 2.0 44 78-142 37-81 (122)
27 PF13541 ChlI: Subunit ChlI of 24.9 64 0.0014 25.7 2.4 67 109-200 50-116 (121)
28 PF02932 Neur_chan_memb: Neuro 24.8 65 0.0014 23.2 2.2 7 23-29 3-9 (237)
29 PF06189 5-nucleotidase: 5'-nu 24.5 29 0.00064 31.9 0.4 21 167-187 221-247 (264)
30 PRK13578 ornithine decarboxyla 24.4 70 0.0015 32.8 3.1 66 156-223 517-600 (720)
31 PLN02781 Probable caffeoyl-CoA 24.2 45 0.00098 28.4 1.5 28 121-148 55-82 (234)
32 PRK15399 lysine decarboxylase 24.1 69 0.0015 32.9 3.0 60 158-223 513-594 (713)
33 cd00126 PAH Pancreatic Hormone 23.8 72 0.0016 21.6 2.1 23 1-23 1-28 (36)
34 KOG3109 Haloacid dehalogenase- 23.4 93 0.002 28.7 3.4 54 159-218 166-220 (244)
35 PF10717 ODV-E18: Occlusion-de 22.9 68 0.0015 25.5 2.1 35 13-47 16-50 (85)
36 PRK12463 chorismate synthase; 22.5 52 0.0011 31.7 1.7 37 129-167 48-92 (390)
37 TIGR01509 HAD-SF-IA-v3 haloaci 21.5 1.4E+02 0.0031 22.4 3.6 55 135-199 127-181 (183)
38 PRK08610 fructose-bisphosphate 21.2 82 0.0018 28.7 2.6 67 128-202 36-107 (286)
39 cd01104 HTH_MlrA-CarA Helix-Tu 20.9 74 0.0016 21.2 1.8 23 175-197 37-59 (68)
40 PRK07709 fructose-bisphosphate 20.8 71 0.0015 29.0 2.1 68 127-202 35-107 (285)
41 PF12646 DUF3783: Domain of un 20.8 79 0.0017 22.1 1.9 19 83-101 34-52 (58)
42 PRK05835 fructose-bisphosphate 20.3 86 0.0019 29.0 2.6 78 125-216 32-111 (307)
43 PRK08185 hypothetical protein; 20.2 74 0.0016 28.9 2.1 71 126-203 29-99 (283)
44 TIGR01369 CPSaseII_lrg carbamo 20.2 2.4E+02 0.0051 29.6 5.9 64 138-207 523-600 (1050)
45 PRK15400 lysine decarboxylase 20.2 96 0.0021 31.9 3.1 58 158-221 513-592 (714)
46 KOG4104 Ganglioside-induced di 20.1 51 0.0011 27.2 1.0 16 176-191 77-95 (113)
No 1
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=83.81 E-value=0.62 Score=40.67 Aligned_cols=20 Identities=35% Similarity=0.355 Sum_probs=13.8
Q ss_pred HHHhcCcceEEeccccccCC
Q 047369 129 IARWLKLDLMIESGAFKDIQ 148 (225)
Q Consensus 129 lAR~LkP~i~IESG~fkGhS 148 (225)
|.-.+||++|||.|++.|=|
T Consensus 27 li~~~kPd~IIE~Gi~~GGS 46 (206)
T PF04989_consen 27 LIWELKPDLIIETGIAHGGS 46 (206)
T ss_dssp HHHHH--SEEEEE--TTSHH
T ss_pred HHHHhCCCeEEEEecCCCch
Confidence 45679999999999999977
No 2
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=68.20 E-value=4.9 Score=36.41 Aligned_cols=53 Identities=25% Similarity=0.251 Sum_probs=40.6
Q ss_pred chhhHHHHHHHhhhhcccccccccccCC--CCCcchhHHHHHHhcCcceEEeccccccCC
Q 047369 91 TTKDLIEVLEEFVPIYETRPVKNNIYGM--GFDQSFGPWFIARWLKLDLMIESGAFKDIQ 148 (225)
Q Consensus 91 t~~dLL~~L~eFvpiY~trPIknn~~Gm--GFdhSFgLwflAR~LkP~i~IESG~fkGhS 148 (225)
-+.++|++|+++-- +.| ++..+| +=|-.-=+=.++|-++|..+||.|+|-|.|
T Consensus 33 ~e~~~l~el~e~t~---~~~--~~~~~m~v~~d~g~fl~~li~~~~ak~~lelGvfTGyS 87 (237)
T KOG1663|consen 33 REPELLKELREATL---TYP--QPGSEMLVGPDKGQFLQMLIRLLNAKRTLELGVFTGYS 87 (237)
T ss_pred CCcHHHHHHHHHHh---hcC--CcccceecChHHHHHHHHHHHHhCCceEEEEecccCHH
Confidence 46789999998753 344 444555 555555566789999999999999999999
No 3
>PF04272 Phospholamban: Phospholamban; InterPro: IPR005984 Phospholamban (PLB) is a small protein (52 amino acids) that regulates the affinity of the cardiac sarcoplasmic reticulum Ca2+-ATPase (SERCA2a) for calcium. PLB is present in cardiac myocytes, in slow-twitch and smooth muscle and is expressed also in aorta endothelial cells in which it could play a role in tissue relaxation. The phosphorylation/dephosphorylation of phospholamban removes and restores, respectively, its inhibitory activity on SERCA2a. It has in fact been shown that phospholamban, in its non-phosphorylated form, binds to SERCA2a and inhibits this pump by lowering its affinity for Ca2+, whereas the phosphorylated form does not exert the inhibition. PLB is phosphorylated at two sites, namely at Ser-16 for a cAMP-dependent phosphokinase and at Thr-17 for a Ca2+/calmodulin-dependent phosphokinase, phosphorylation at Ser-16 being a prerequisite for the phosphorylation at Thr-17. The structure of a 36-amino-acid-long N-terminal fragment of human phospholamban phosphorylated at Ser-16 and Thr-17 and Cys36Ser mutated was determined from nuclear magnetic resonance data. The peptide assumes a conformation characterised by two alpha-helices connected by an irregular strand, which comprises the amino acids from Arg-13 to Pro-21. The proline is in a trans conformation. The two phosphate groups on Ser-16 and Thr-17 are shown to interact preferably with the side chains of Arg-14 and Arg-13, respectively [].; GO: 0005246 calcium channel regulator activity, 0042030 ATPase inhibitor activity, 0006816 calcium ion transport, 0016020 membrane; PDB: 1N7L_A 1FJP_A 1FJK_A 2HYN_C 1ZLL_D 1PLP_A 3O7L_I.
Probab=50.23 E-value=30 Score=25.20 Aligned_cols=32 Identities=25% Similarity=0.481 Sum_probs=22.5
Q ss_pred CCCchhhhhHHhhhhhhhhhHHHHHHHHHHHhh
Q 047369 6 MRSPPLRRQYFSRFSHASPCLIICVLVLFGAVS 38 (225)
Q Consensus 6 ~~~~~~~~~~~sr~~~~~pc~~~~~~~~~~~~s 38 (225)
+.-||-|.+-+..+ +.-.|+|+.|++++-++.
T Consensus 18 iev~~qa~qnlqel-fvnfclilicllli~iiv 49 (52)
T PF04272_consen 18 IEVPQQARQNLQEL-FVNFCLILICLLLICIIV 49 (52)
T ss_dssp SSSCHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 45678888777777 667888888876555443
No 4
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=46.69 E-value=11 Score=32.03 Aligned_cols=53 Identities=17% Similarity=0.229 Sum_probs=34.8
Q ss_pred hhhHHHHHHHhhhhcccccccccccCCCCCcchhHHHHHHhcCcceEEeccccccCC
Q 047369 92 TKDLIEVLEEFVPIYETRPVKNNIYGMGFDQSFGPWFIARWLKLDLMIESGAFKDIQ 148 (225)
Q Consensus 92 ~~dLL~~L~eFvpiY~trPIknn~~GmGFdhSFgLwflAR~LkP~i~IESG~fkGhS 148 (225)
+.++|++++++-.--.--| +|--..-.+.| |-++++..+|.-|+|.|+|-|.|
T Consensus 7 ~~~~l~~l~~~t~~~~~~~---~~~i~~~~g~l-L~~l~~~~~~k~vLEIGt~~GyS 59 (205)
T PF01596_consen 7 EPELLKELREFTRENQGLP---QMSISPETGQL-LQMLVRLTRPKRVLEIGTFTGYS 59 (205)
T ss_dssp STHHHHHHHHHHHCTTTTG---GGSHHHHHHHH-HHHHHHHHT-SEEEEESTTTSHH
T ss_pred CCHHHHHHHHHHHhCcCCC---CCccCHHHHHH-HHHHHHhcCCceEEEeccccccH
Confidence 6788999998853321111 11111122233 78999999999999999999999
No 5
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=45.43 E-value=11 Score=33.17 Aligned_cols=26 Identities=8% Similarity=0.092 Sum_probs=23.7
Q ss_pred chhHHHHHHhcCcceEEeccccccCC
Q 047369 123 SFGPWFIARWLKLDLMIESGAFKDIQ 148 (225)
Q Consensus 123 SFgLwflAR~LkP~i~IESG~fkGhS 148 (225)
.=-|.+++|..+|..|+|.|++-|.|
T Consensus 68 g~lL~~l~~~~~ak~iLEiGT~~GyS 93 (247)
T PLN02589 68 GQFLNMLLKLINAKNTMEIGVYTGYS 93 (247)
T ss_pred HHHHHHHHHHhCCCEEEEEeChhhHH
Confidence 34588999999999999999999998
No 6
>cd00123 DmpA_OAT DmpA/OAT superfamily; composed of L-aminopeptidase D-amidase/D-esterase (DmpA), ornithine acetyltransferase (OAT) and similar proteins. DmpA is an aminopeptidase that releases N-terminal D and L amino acids from peptide substrates. This group represents one of the rare aminopeptidases that are not metalloenzymes. DmpA shows similarity in catalytic mechanism to N-terminal nucleophile (Ntn) hydrolases, which are enzymes that catalyze the cleavage of amide bonds through the nucleophilic attack of the side chain of an N-terminal serine, threonine, or cysteine. OAT catalyzes the first and fifth steps in arginine biosynthesis, coupling acetylation of glutamate with deacetylation of N-acetylornithine, which allows recycling of the acetyl group in the arginine biosynthetic pathway. The superfamily also contains an enzyme, endo-type 6-aminohexanoate-oligomer hydrolase, that have been shown to be involved in nylon degradation. Proteins in this superfamily undergo autocatalytic c
Probab=44.68 E-value=23 Score=31.55 Aligned_cols=41 Identities=29% Similarity=0.481 Sum_probs=31.6
Q ss_pred ccceEEEE-eccc---hhHHHHHHHHHHcCceEEEeecCCCCCCCcc
Q 047369 170 NLSRVLIF-FYDH---QNELKRLKQALKVGFRHLVFEDNYDTGTGDH 212 (225)
Q Consensus 170 D~srvLiF-FDDH---qnqlkRv~qA~~aGf~hLIFeDnydtgtgdh 212 (225)
+.+-+|.| +=|- ..||+|+.++-..||-+++- +.||+|||-
T Consensus 197 ~maTmL~~i~TDA~l~~~~l~r~~~~a~~~fnri~v--dg~~stgDt 241 (286)
T cd00123 197 DXATLITFFATDARLDPAELDRLARVXDRTFNRVSI--DTDTSTGDT 241 (286)
T ss_pred CCccEEEEEEeCCcCCHHHHHHHHHhhhcccceeee--cCCCCCCCE
Confidence 34445544 4553 57999999999999999999 579999983
No 7
>TIGR01294 P_lamban phospholamban. This model represents the short (52 residue) transmembrane phosphoprotein phospholamban. Phospholamban, in its unphosphorylated form, inhibits SERCA2, the cardiac sarcoplasmic reticulum Ca-ATPase.
Probab=38.27 E-value=50 Score=24.11 Aligned_cols=29 Identities=28% Similarity=0.493 Sum_probs=19.1
Q ss_pred CchhhhhHHhhhhhhhhhHHHHHHHHHHHh
Q 047369 8 SPPLRRQYFSRFSHASPCLIICVLVLFGAV 37 (225)
Q Consensus 8 ~~~~~~~~~sr~~~~~pc~~~~~~~~~~~~ 37 (225)
-||-|++-+..+ +.-.|+|+.|++++-++
T Consensus 20 ~~~qar~~lq~l-fvnf~lilicllli~ii 48 (52)
T TIGR01294 20 MPQQARQNLQNL-FINFCLILICLLLICII 48 (52)
T ss_pred CCHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 466677767666 56678887777555443
No 8
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=38.12 E-value=18 Score=31.77 Aligned_cols=50 Identities=20% Similarity=0.205 Sum_probs=33.5
Q ss_pred hhhHHHHHHHhhhhcccccccccccCCCCCcchhHHHHHHhcCcceEEeccccccCC
Q 047369 92 TKDLIEVLEEFVPIYETRPVKNNIYGMGFDQSFGPWFIARWLKLDLMIESGAFKDIQ 148 (225)
Q Consensus 92 ~~dLL~~L~eFvpiY~trPIknn~~GmGFdhSFgLwflAR~LkP~i~IESG~fkGhS 148 (225)
...++++++||=..-. -|+.-. ..-=-|.++||-.+|..|+|.|++-|.|
T Consensus 24 ~~~~~~~~~e~a~~~~-~pi~~~------e~g~~L~~L~~~~~~k~iLEiGT~~GyS 73 (219)
T COG4122 24 PPALLAELEEFARENG-VPIIDP------ETGALLRLLARLSGPKRILEIGTAIGYS 73 (219)
T ss_pred CchHHHHHHHHhHhcC-CCCCCh------hHHHHHHHHHHhcCCceEEEeecccCHH
Confidence 3456777777753221 122211 1123478999999999999999999999
No 9
>PF14048 MBD_C: C-terminal domain of methyl-CpG binding protein 2 and 3; PDB: 2L2L_B.
Probab=38.03 E-value=19 Score=28.25 Aligned_cols=22 Identities=23% Similarity=0.247 Sum_probs=15.6
Q ss_pred eEEEEeccchhHHHHHHHHHHc
Q 047369 173 RVLIFFYDHQNELKRLKQALKV 194 (225)
Q Consensus 173 rvLiFFDDHqnqlkRv~qA~~a 194 (225)
+++|==+|=.+|-+||++||+|
T Consensus 70 ~~~VT~eDIr~QE~rVk~aR~R 91 (96)
T PF14048_consen 70 QFVVTEEDIRRQERRVKKARKR 91 (96)
T ss_dssp -----HHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHHHHH
Confidence 4445568999999999999986
No 10
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=36.10 E-value=46 Score=25.90 Aligned_cols=36 Identities=19% Similarity=0.506 Sum_probs=26.5
Q ss_pred cchhhhccCCcccceEEEEeccchhHHHHHHHHHHcCceEE
Q 047369 159 WGPVMKRHGITNLSRVLIFFYDHQNELKRLKQALKVGFRHL 199 (225)
Q Consensus 159 W~~vl~~~g~~D~srvLiFFDDHqnqlkRv~qA~~aGf~hL 199 (225)
+..++++.+ +++++++ |++|+.. =+..|.++|++.+
T Consensus 147 ~~~~~~~~~-~~~~~~l-~vgD~~~---di~aA~~~G~~~i 182 (184)
T TIGR01993 147 YEKALREAG-VDPERAI-FFDDSAR---NIAAAKALGMKTV 182 (184)
T ss_pred HHHHHHHhC-CCccceE-EEeCCHH---HHHHHHHcCCEEe
Confidence 345566665 5777765 8899864 4899999999865
No 11
>PF00156 Pribosyltran: Phosphoribosyl transferase domain; InterPro: IPR000836 The name PRT comes from phosphoribosyltransferase (PRTase) enzymes, which carry out phosphoryl transfer reactions on 5-phosphoribosyl-alpha1-pyrophosphate PRPP, an activated form of ribose-5-phosphate. Members of Phosphoribosyltransferase (PRT) are catalytic and are regulatory proteins involved in nucleotide synthesis and salvage []. This includes a range of diverse phosphoribosyl transferase enzymes including adenine phosphoribosyltransferase (2.4.2.7 from EC); hypoxanthine-guanine-xanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC); ribose-phosphate pyrophosphokinase (2.7.6.1 from EC); amidophosphoribosyltransferase (2.4.2.14 from EC); orotate phosphoribosyltransferase (2.4.2.10 from EC);uracil phosphoribosyltransferase (2.4.2.9 from EC); and xanthine-guanine phosphoribosyltransferase (2.4.2.22 from EC). Not all PRT proteins are enzymes. For example, in some bacteria PRT proteins regulate the expression of purine and pyrimidine synthetic genes. Members of PRT are defined by the protein fold and by a short 13-residue sequence motif, The motif consists of four hydrophobic amino acids, two acidic amino acids and seven amino acids of variable character, usually including glycine and threonine. The motif has been predicted to be a PRPP-binding site in advance of structural information [, ]. Apart of this motif, different PRT proteins have a low level of sequence identity, less than 15%. The PRT sequence motif is only found in PRTases from the nucleotide synthesis and salvage pathways. Other PRTases, from the tryptophan, histidine and nicotinamide synthetic and salvage pathways, lack the PRT sequence motif and appear to be unrelated to each other and unrelated to the PRT family.; GO: 0009116 nucleoside metabolic process; PDB: 2JBH_A 1Y0B_D 2FXV_B 1GPH_1 1AO0_D 1ORO_B 1VCH_C 2WNS_A 2PRZ_B 2PS1_A ....
Probab=35.99 E-value=20 Score=26.01 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=18.1
Q ss_pred cCceEEEeecCCCCCCCcchhhhhhhc
Q 047369 194 VGFRHLVFEDNYDTGTGDHYSLRQLCD 220 (225)
Q Consensus 194 aGf~hLIFeDnydtgtgdhyslrqicd 220 (225)
.|=+.||.||-.+||+ |++++++
T Consensus 87 ~gk~vliVDDvi~tG~----Tl~~~~~ 109 (125)
T PF00156_consen 87 KGKRVLIVDDVIDTGG----TLKEAIE 109 (125)
T ss_dssp TTSEEEEEEEEESSSH----HHHHHHH
T ss_pred cceeEEEEeeeEcccH----HHHHHHH
Confidence 4567899999999996 6777665
No 12
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=35.94 E-value=43 Score=23.56 Aligned_cols=12 Identities=25% Similarity=0.440 Sum_probs=5.2
Q ss_pred cCceEEEeecCC
Q 047369 194 VGFRHLVFEDNY 205 (225)
Q Consensus 194 aGf~hLIFeDny 205 (225)
.+.+...+.+.+
T Consensus 41 ~~v~i~~~~~~~ 52 (97)
T PF13704_consen 41 PGVGIIRWVDPY 52 (97)
T ss_pred CCcEEEEeCCCc
Confidence 334444444433
No 13
>PF10008 DUF2251: Uncharacterized protein conserved in bacteria (DUF2251); InterPro: IPR014449 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=34.48 E-value=12 Score=30.09 Aligned_cols=23 Identities=35% Similarity=0.309 Sum_probs=17.4
Q ss_pred CceEEEeecCCCCCCCcchhhhh
Q 047369 195 GFRHLVFEDNYDTGTGDHYSLRQ 217 (225)
Q Consensus 195 Gf~hLIFeDnydtgtgdhyslrq 217 (225)
|-=..|||||-+||.==.+.++|
T Consensus 10 ~~~~vVFEDdGeTGYFYa~d~~q 32 (97)
T PF10008_consen 10 GPYAVVFEDDGETGYFYACDTSQ 32 (97)
T ss_pred CCEEEEEEeCCCcEEEEEEeccc
Confidence 33457999999999866666665
No 14
>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like. This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower
Probab=33.34 E-value=85 Score=27.62 Aligned_cols=54 Identities=20% Similarity=0.316 Sum_probs=37.5
Q ss_pred cccccc-cchhhhccCCcccceEEEEeccchhHHHHHHHHHHcCceEE-EeecCCCC
Q 047369 153 GFGSID-WGPVMKRHGITNLSRVLIFFYDHQNELKRLKQALKVGFRHL-VFEDNYDT 207 (225)
Q Consensus 153 DfgsvD-W~~vl~~~g~~D~srvLiFFDDHqnqlkRv~qA~~aGf~hL-IFeDnydt 207 (225)
.||..+ . +.|++.++.-.-||++..........+++.|.++|..-+ |+.|-+|.
T Consensus 53 nyG~~~D~-~~L~~~gvdv~GKIvLvr~G~~~~~~Kv~~A~~~GA~gVIiy~Dp~d~ 108 (220)
T cd02121 53 NYGSPEDF-EYLEDLGIDVKGKIVIARYGGIFRGLKVKNAQLAGAVGVIIYSDPADD 108 (220)
T ss_pred CCCcHHHH-HHHhhcCCCCCCeEEEEECCCccHHHHHHHHHHcCCEEEEEEeCchhc
Confidence 355443 2 235666776688999998887776778999999998755 45555554
No 15
>PF05510 Sarcoglycan_2: Sarcoglycan alpha/epsilon; InterPro: IPR008908 Sarcoglycans are a subcomplex of transmembrane proteins which are part of the dystrophin-glycoprotein complex. They are expressed in the skeletal, cardiac and smooth muscle. Although numerous studies have been conducted on the sarcoglycan subcomplex in skeletal and cardiac muscle, the manner of the distribution and localisation of these proteins along the nonjunctional sarcolemma is not clear []. This family contains alpha and epsilon members.; GO: 0016012 sarcoglycan complex
Probab=32.62 E-value=42 Score=32.28 Aligned_cols=38 Identities=26% Similarity=0.450 Sum_probs=25.1
Q ss_pred CCCCchhhhhHHhhh--hhhhhhHHHHHHHHHHHhhheee
Q 047369 5 PMRSPPLRRQYFSRF--SHASPCLIICVLVLFGAVSLTFH 42 (225)
Q Consensus 5 ~~~~~~~~~~~~sr~--~~~~pc~~~~~~~~~~~~s~~f~ 42 (225)
|.+++.-.++|+.-+ .-+.|++|+++|+++++..+.++
T Consensus 271 Pp~~~~p~R~y~~d~~vtl~iPl~i~llL~llLs~Imc~r 310 (386)
T PF05510_consen 271 PPKESVPGRDYFPDFLVTLAIPLIIALLLLLLLSYIMCCR 310 (386)
T ss_pred CCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHheec
Confidence 444443456777765 56788877777777777776666
No 16
>PF00159 Hormone_3: Pancreatic hormone peptide; InterPro: IPR001955 Pancreatic hormone (PP) [] is a peptide synthesized in pancreatic islets of Langherhans, which acts as a regulator of pancreatic and gastrointestinal functions. The hormone is produced as a larger propeptide, which is enzymatically cleaved to yield the mature active peptide: this is 36 amino acids in length [] and has an amidated C terminus []. The hormone has a globular structure, residues 2-8 forming a left-handed poly-proline-II-like helix, residues 9-13 a beta turn, and 14-32 an alpha-helix,held close to the first helix by hydrophobic interactions []. Unlike glucagon, another peptide hormone, the structure of pancreatic peptide is preserved in aqueous solution []. Both N and C termini are required for activity: receptor binding and activation functions may reside in the N and C termini respectively []. Pancreatic hormone is part of a wider family of active peptides that includes: Neuropeptide Y (NPY) [], one of the most abundant peptides in the mammalian nervous system. NPY is implicated in the control of feeding and the secretion of the gonadotrophin-releasing hormone. Peptide YY (PYY) []. PPY is a gut peptide that inhibits exocrine pancreatic secretion, has a vasoconstrictory action and inhibits jejunal and colonic mobility. Various NPY and PYY-like polypeptides from fish and amphibians [, ]. Neuropeptide F (NPF) from invertebrates such as worms and snail. Skin peptide Tyr-Tyr (SPYY) from the frog Phyllomedusa bicolor. SPYY shows a large spectra of antibacterial and antifungal activity. All these peptides are 36 to 39 amino acids long. Like most active peptides, their C-terminal is amidated and they are synthesized as larger protein precursors.; GO: 0005179 hormone activity, 0005576 extracellular region; PDB: 1LJV_A 1BBA_A 1V1D_A 1PPT_A 2H3T_A 2H4B_A 2BF9_A 2H3S_B 1K8V_A 2DF0_A ....
Probab=30.83 E-value=40 Score=22.72 Aligned_cols=23 Identities=30% Similarity=0.489 Sum_probs=15.6
Q ss_pred CCCCCCCCch-----hhhhHHhhhhhhh
Q 047369 1 MPPKPMRSPP-----LRRQYFSRFSHAS 23 (225)
Q Consensus 1 ~~~~~~~~~~-----~~~~~~sr~~~~~ 23 (225)
||+||.+.-. -.++|++.+.|+.
T Consensus 1 ~p~~P~~P~~~aspeel~~Y~~~L~~Y~ 28 (36)
T PF00159_consen 1 YPSKPERPGDFASPEELAQYYAALRHYI 28 (36)
T ss_dssp --SSSSSSSTTSSHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 6778875444 4678999998874
No 17
>PTZ00445 p36-lilke protein; Provisional
Probab=29.43 E-value=62 Score=29.14 Aligned_cols=40 Identities=28% Similarity=0.370 Sum_probs=28.8
Q ss_pred chhhhccCCcccceEEEEeccchhHHHHHHHHHHcCceEEEeecC
Q 047369 160 GPVMKRHGITNLSRVLIFFYDHQNELKRLKQALKVGFRHLVFEDN 204 (225)
Q Consensus 160 ~~vl~~~g~~D~srvLiFFDDHqnqlkRv~qA~~aGf~hLIFeDn 204 (225)
..++++.| ++.++ .+||||.+ .-++.|++.|++-+.|.+.
T Consensus 168 e~ll~~~g-l~peE-~LFIDD~~---~NVeaA~~lGi~ai~f~~~ 207 (219)
T PTZ00445 168 KQVCSDFN-VNPDE-ILFIDDDM---NNCKNALKEGYIALHVTGN 207 (219)
T ss_pred HHHHHHcC-CCHHH-eEeecCCH---HHHHHHHHCCCEEEEcCCh
Confidence 34445544 34444 57999985 5688999999999999853
No 18
>smart00309 PAH Pancreatic hormones / neuropeptide F / peptide YY family. Pancreatic hormone is a regulator of pancreatic and gastrointestinal functions.
Probab=28.65 E-value=52 Score=22.33 Aligned_cols=23 Identities=35% Similarity=0.488 Sum_probs=17.5
Q ss_pred CCCCCCCCch-----hhhhHHhhhhhhh
Q 047369 1 MPPKPMRSPP-----LRRQYFSRFSHAS 23 (225)
Q Consensus 1 ~~~~~~~~~~-----~~~~~~sr~~~~~ 23 (225)
||+||.+.-. =.++|++.++|+.
T Consensus 1 ~p~~P~~Pg~~a~~e~l~~Y~~~L~~Yi 28 (36)
T smart00309 1 MPSKPERPGDDASPEDLRQYLAALREYI 28 (36)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 6888877443 3678999999985
No 19
>cd06532 Glyco_transf_25 Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of Neisseria gonorrhoeae and Lic2A of Haemophilus influenzae. M. catarrhalis Lgt2 catalyzes the addition of galactose (Gal) to the growing chain of LOS on the cell surface. N. gonorrhoeae LgtB and LgtE link Gal-beta(1,4) to GlcNAc (N-acetylglucosamine) and Glc (glucose), respectively. The genes encoding LgtB and LgtE are two genes of a five gene locus involved in the synthesis of gonococcal LOS. LgtE is believed to perform the first step in LOS biosynthesis.
Probab=28.52 E-value=73 Score=24.34 Aligned_cols=29 Identities=17% Similarity=0.220 Sum_probs=18.2
Q ss_pred EEeccchhHHHHHHHHHHcC-ceEEEeecCCCC
Q 047369 176 IFFYDHQNELKRLKQALKVG-FRHLVFEDNYDT 207 (225)
Q Consensus 176 iFFDDHqnqlkRv~qA~~aG-f~hLIFeDnydt 207 (225)
+-|==|++-.|++ .+.| =..||||||..=
T Consensus 66 GC~lSH~~~w~~~---~~~~~~~alIlEDDv~~ 95 (128)
T cd06532 66 GCFLSHYKLWQKI---VESNLEYALILEDDAIL 95 (128)
T ss_pred HHHHHHHHHHHHH---HHcCCCeEEEEccCcEE
Confidence 3443455555555 4556 568999999753
No 20
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=28.33 E-value=80 Score=22.84 Aligned_cols=37 Identities=16% Similarity=0.391 Sum_probs=25.9
Q ss_pred cchhhhccCCcccceEEEEeccchhHHHHHHHHHHcCceEEE
Q 047369 159 WGPVMKRHGITNLSRVLIFFYDHQNELKRLKQALKVGFRHLV 200 (225)
Q Consensus 159 W~~vl~~~g~~D~srvLiFFDDHqnqlkRv~qA~~aGf~hLI 200 (225)
+..++++.++ ++++ ++|+||+.. =|+.|.++|++.+-
T Consensus 139 ~~~~~~~~~~-~p~~-~~~vgD~~~---d~~~A~~~G~~~i~ 175 (176)
T PF13419_consen 139 YRRALEKLGI-PPEE-ILFVGDSPS---DVEAAKEAGIKTIW 175 (176)
T ss_dssp HHHHHHHHTS-SGGG-EEEEESSHH---HHHHHHHTTSEEEE
T ss_pred HHHHHHHcCC-Ccce-EEEEeCCHH---HHHHHHHcCCeEEe
Confidence 4556666655 4444 688999984 46789999998653
No 21
>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria. LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence
Probab=27.35 E-value=47 Score=30.70 Aligned_cols=26 Identities=27% Similarity=0.570 Sum_probs=19.3
Q ss_pred chhHHHHHHhcC---------cc-eEEeccccccCC
Q 047369 123 SFGPWFIARWLK---------LD-LMIESGAFKDIQ 148 (225)
Q Consensus 123 SFgLwflAR~Lk---------P~-i~IESG~fkGhS 148 (225)
+|-+|++..+++ ++ +|||.|.+||+.
T Consensus 200 tf~~~~~~~~l~~~~~~~~L~~~s~vi~~GGwK~~~ 235 (365)
T PF04443_consen 200 TFFIWFLLDELEERGIRFRLPKGSIVIHGGGWKGRR 235 (365)
T ss_pred hHHHHHHHHHHHhcCCcccCCCCCEEEeCCCCCccc
Confidence 556787665443 34 899999999987
No 22
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=27.17 E-value=48 Score=29.10 Aligned_cols=63 Identities=29% Similarity=0.537 Sum_probs=47.3
Q ss_pred HHhcCcceEEeccccccCCCCCCcccccccchhhhccCC----cccceEEEEeccch--hHHHH-HHHHHHcCceEEEee
Q 047369 130 ARWLKLDLMIESGAFKDIQPGFCGFGSIDWGPVMKRHGI----TNLSRVLIFFYDHQ--NELKR-LKQALKVGFRHLVFE 202 (225)
Q Consensus 130 AR~LkP~i~IESG~fkGhSPdf~DfgsvDW~~vl~~~g~----~D~srvLiFFDDHq--nqlkR-v~qA~~aGf~hLIFe 202 (225)
++-++||.++| +--.++|| -|+++|+ +|+...||=+|+-. -|++. +.|+.++|.+.+|.-
T Consensus 3 ~k~~~Pd~~v~--tv~~i~~~-----------~L~~~Gikgvi~DlDNTLv~wd~~~~tpe~~~W~~e~k~~gi~v~vvS 69 (175)
T COG2179 3 IKFLQPDKLVE--TVFDITPD-----------ILKAHGIKGVILDLDNTLVPWDNPDATPELRAWLAELKEAGIKVVVVS 69 (175)
T ss_pred hhhhChhHHHh--hHhhCCHH-----------HHHHcCCcEEEEeccCceecccCCCCCHHHHHHHHHHHhcCCEEEEEe
Confidence 46788999988 44455564 3556665 89999999998765 35554 678999999999998
Q ss_pred cCC
Q 047369 203 DNY 205 (225)
Q Consensus 203 Dny 205 (225)
+|-
T Consensus 70 Nn~ 72 (175)
T COG2179 70 NNK 72 (175)
T ss_pred CCC
Confidence 874
No 23
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=26.32 E-value=99 Score=24.61 Aligned_cols=59 Identities=19% Similarity=0.323 Sum_probs=37.5
Q ss_pred ceEEeccccccCCCCCCcccccccchhhhccCCcccceEEEEeccchhHHHHHHHHHHcCceEEEeecC
Q 047369 136 DLMIESGAFKDIQPGFCGFGSIDWGPVMKRHGITNLSRVLIFFYDHQNELKRLKQALKVGFRHLVFEDN 204 (225)
Q Consensus 136 ~i~IESG~fkGhSPdf~DfgsvDW~~vl~~~g~~D~srvLiFFDDHqnqlkRv~qA~~aGf~hLIFeDn 204 (225)
|.++-|....-..|+=.= +..++++.| ++++++ +|+||...- ++-|.++|++.+.+.|.
T Consensus 129 d~v~~s~~~~~~KP~p~~-----~~~~~~~~~-~~p~~~-l~vgD~~~d---i~aA~~aG~~~i~~~~~ 187 (199)
T PRK09456 129 DHIYLSQDLGMRKPEARI-----YQHVLQAEG-FSAADA-VFFDDNADN---IEAANALGITSILVTDK 187 (199)
T ss_pred CEEEEecccCCCCCCHHH-----HHHHHHHcC-CChhHe-EEeCCCHHH---HHHHHHcCCEEEEecCC
Confidence 445555554444554111 234555554 456665 678998653 99999999999888764
No 24
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=25.34 E-value=3.6e+02 Score=22.73 Aligned_cols=96 Identities=15% Similarity=0.176 Sum_probs=59.9
Q ss_pred HHHHHhhhhcccccccccccCCCCCcchhHHHHHHhcCcceEEeccccccCCCCCCcccccccchhhhccCCcccceEEE
Q 047369 97 EVLEEFVPIYETRPVKNNIYGMGFDQSFGPWFIARWLKLDLMIESGAFKDIQPGFCGFGSIDWGPVMKRHGITNLSRVLI 176 (225)
Q Consensus 97 ~~L~eFvpiY~trPIknn~~GmGFdhSFgLwflAR~LkP~i~IESG~fkGhSPdf~DfgsvDW~~vl~~~g~~D~srvLi 176 (225)
..+++.+.++..+. +=-.+|+|..++.+.+|-.+-.+..+-... + .|.+ ..+.....++..-+++
T Consensus 116 ~~l~~~~~~i~~a~-~I~i~G~G~s~~~A~~~~~~l~~~g~~~~~-------~--~d~~-----~~~~~~~~~~~~Dv~I 180 (278)
T PRK11557 116 EKLHECVTMLRSAR-RIILTGIGASGLVAQNFAWKLMKIGINAVA-------E--RDMH-----ALLATVQALSPDDLLL 180 (278)
T ss_pred HHHHHHHHHHhcCC-eEEEEecChhHHHHHHHHHHHhhCCCeEEE-------c--CChH-----HHHHHHHhCCCCCEEE
Confidence 34555665555443 457899999999999998877765332221 1 1222 2122222345566788
Q ss_pred Eec---cchhHHHHHHHHHHcCceEEEeecCCCC
Q 047369 177 FFY---DHQNELKRLKQALKVGFRHLVFEDNYDT 207 (225)
Q Consensus 177 FFD---DHqnqlkRv~qA~~aGf~hLIFeDnydt 207 (225)
+|. ...+=..=++.|.+.|.+.+.+=|+.++
T Consensus 181 ~iS~sg~~~~~~~~~~~ak~~ga~iI~IT~~~~s 214 (278)
T PRK11557 181 AISYSGERRELNLAADEALRVGAKVLAITGFTPN 214 (278)
T ss_pred EEcCCCCCHHHHHHHHHHHHcCCCEEEEcCCCCC
Confidence 885 2333345588999999999999887654
No 25
>PF11857 DUF3377: Domain of unknown function (DUF3377); InterPro: IPR021805 This domain is functionally uncharacterised and found at the C terminus of peptidases belonging to MEROPS peptidase family M10A, membrane-type matrix metallopeptidases (clan MA). ; GO: 0004222 metalloendopeptidase activity
Probab=25.32 E-value=67 Score=24.82 Aligned_cols=31 Identities=13% Similarity=0.299 Sum_probs=16.0
Q ss_pred hhhhHHHHHHHHHHHhhheee-c---ccceEeecc
Q 047369 22 ASPCLIICVLVLFGAVSLTFH-Y---SHNLVCISP 52 (225)
Q Consensus 22 ~~pc~~~~~~~~~~~~s~~f~-~---s~~~~c~~~ 52 (225)
..||+|++|++.++..-+.|. | .|-.||-.|
T Consensus 35 viPl~L~LCiLvl~yai~~fkrkGtPr~llYckRS 69 (74)
T PF11857_consen 35 VIPLVLLLCILVLIYAIFQFKRKGTPRRLLYCKRS 69 (74)
T ss_pred eHHHHHHHHHHHHHHHhheeeecCCCcEEEEEecc
Confidence 469987777733333333343 1 133566654
No 26
>cd07972 OBF_DNA_ligase_Arch_LigB The Oligonucleotide/oligosaccharide binding (OB)-fold domain of archaeal and bacterial ATP-dependent DNA ligases is a DNA-binding module that is part of the catalytic core unit. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. DNA ligases play a vital role in the diverse processes of DNA replication, recombination and repair. ATP-dependent ligases are present in many organisms such as viruses, bacteriohages, eukarya, archaea and bacteria. Bacterial DNA ligases are divided into two broad classes: NAD-dependent and ATP-dependent. All bacterial species have a NAD-dependent DNA ligase (LigA). Some bacterial genomes contain multiple genes for DNA ligases that are predicted to use ATP as their cofactor, including Mycobacterium tuberculosis LigB, LigC, and LigD. This group is composed of Pyrococcus furiosus DN
Probab=24.91 E-value=55 Score=25.34 Aligned_cols=44 Identities=20% Similarity=0.133 Sum_probs=25.4
Q ss_pred cchhh-ccccccccchhhHHHHHHHhhhhcccccccccccCCCCCcchhHHHHHHhcCcceEEecc
Q 047369 78 VPWYR-KMEKRVEWTTKDLIEVLEEFVPIYETRPVKNNIYGMGFDQSFGPWFIARWLKLDLMIESG 142 (225)
Q Consensus 78 vpwcr-k~~~~veWt~~dLL~~L~eFvpiY~trPIknn~~GmGFdhSFgLwflAR~LkP~i~IESG 142 (225)
++.|+ .+| ++ .+.++.|.+.+.-..+.+.+ -+.|++|+++.|.-
T Consensus 37 ~~vg~vgtG----~~-~~~~~~l~~~l~~~~~~~~~----------------~~~wv~P~lV~eV~ 81 (122)
T cd07972 37 VPVGKVATG----LT-DEELEELTERLRELIIEKFG----------------PVVSVKPELVFEVA 81 (122)
T ss_pred EEEEEEccC----CC-HHHHHHHHHHhhhhhccccC----------------CcEEEeceEEEEEE
Confidence 35566 555 33 45556677665433333211 14689999999863
No 27
>PF13541 ChlI: Subunit ChlI of Mg-chelatase
Probab=24.91 E-value=64 Score=25.75 Aligned_cols=67 Identities=16% Similarity=0.282 Sum_probs=40.4
Q ss_pred ccccccccCCCCCcchhHHHHHHhcCcceEEeccccccCCCCCCcccccccchhhhccCCcccceEEEEeccchhHHHHH
Q 047369 109 RPVKNNIYGMGFDQSFGPWFIARWLKLDLMIESGAFKDIQPGFCGFGSIDWGPVMKRHGITNLSRVLIFFYDHQNELKRL 188 (225)
Q Consensus 109 rPIknn~~GmGFdhSFgLwflAR~LkP~i~IESG~fkGhSPdf~DfgsvDW~~vl~~~g~~D~srvLiFFDDHqnqlkRv 188 (225)
+|---+..|.+||=+.++=.++-..+-++ ..+..=+|++.=+--+++-. +-+.|+
T Consensus 50 ap~~l~k~g~~~DLaIA~ailsa~~~~~~----------~~~~~~~GEl~L~G~ir~v~---------------~~~~~~ 104 (121)
T PF13541_consen 50 APADLKKEGPAFDLAIAIAILSAFGQIPI----------PEDTVFIGELGLDGEIRPVP---------------GILPRI 104 (121)
T ss_pred EeCCEEEeeeeehHHHHHHHHHhCCCccc----------CCCEEEEEEecCCccEEecC---------------cHHHHH
Confidence 45555667788887777665543211000 02333356665555444442 357899
Q ss_pred HHHHHcCceEEE
Q 047369 189 KQALKVGFRHLV 200 (225)
Q Consensus 189 ~qA~~aGf~hLI 200 (225)
++|.+.||+++|
T Consensus 105 ~~A~~~G~~~vi 116 (121)
T PF13541_consen 105 IEAKKLGFKRVI 116 (121)
T ss_pred HHHHHCCCCEEE
Confidence 999999999876
No 28
>PF02932 Neur_chan_memb: Neurotransmitter-gated ion-channel transmembrane region ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006029 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]. Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This domain represents four transmembrane helices of a variety of neurotransmitter-gated ion-channels.; GO: 0006811 ion transport, 0016020 membrane; PDB: 1DXZ_A 3MRA_A 1EQ8_C 1OED_C 2PR9_P 1A11_A 1CEK_A 2BG9_E 2KSR_A 2K59_B ....
Probab=24.81 E-value=65 Score=23.23 Aligned_cols=7 Identities=43% Similarity=1.279 Sum_probs=2.9
Q ss_pred hhhHHHH
Q 047369 23 SPCLIIC 29 (225)
Q Consensus 23 ~pc~~~~ 29 (225)
.||++|.
T Consensus 3 ~P~~li~ 9 (237)
T PF02932_consen 3 IPCILIV 9 (237)
T ss_dssp HHHHHHH
T ss_pred ehHHHHH
Confidence 3444333
No 29
>PF06189 5-nucleotidase: 5'-nucleotidase; InterPro: IPR010394 This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (3.1.3.5 from EC).; GO: 0000166 nucleotide binding, 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0009117 nucleotide metabolic process, 0005737 cytoplasm
Probab=24.51 E-value=29 Score=31.92 Aligned_cols=21 Identities=38% Similarity=0.517 Sum_probs=15.1
Q ss_pred CCcccceEE------EEeccchhHHHH
Q 047369 167 GITNLSRVL------IFFYDHQNELKR 187 (225)
Q Consensus 167 g~~D~srvL------iFFDDHqnqlkR 187 (225)
|+++|.+|| |||||.+.++..
T Consensus 221 gG~~K~~vL~~~~phIFFDDQ~~H~~~ 247 (264)
T PF06189_consen 221 GGLPKGPVLKAFRPHIFFDDQDGHLES 247 (264)
T ss_pred CCCchhHHHHhhCCCEeecCchhhhhH
Confidence 445666555 899999888764
No 30
>PRK13578 ornithine decarboxylase; Provisional
Probab=24.41 E-value=70 Score=32.85 Aligned_cols=66 Identities=24% Similarity=0.441 Sum_probs=43.5
Q ss_pred ccccchhhhccCC----cccceEEEEec--cchhHHHHHHHHHHcCceEEEeecCCC------------CCCCcchhhhh
Q 047369 156 SIDWGPVMKRHGI----TNLSRVLIFFY--DHQNELKRLKQALKVGFRHLVFEDNYD------------TGTGDHYSLRQ 217 (225)
Q Consensus 156 svDW~~vl~~~g~----~D~srvLiFFD--DHqnqlkRv~qA~~aGf~hLIFeDnyd------------tgtgdhyslrq 217 (225)
.....++|+++|+ .|...+|..|- |-.....|+.+|+.. |+.+ +|+|.. ...=..|.|||
T Consensus 517 g~~l~~~L~e~gI~~E~~d~~~vL~l~s~g~t~~~~~~Lv~aL~~-f~~~-~~~~~~~~~~lp~~~~~~~~~y~~~~l~~ 594 (720)
T PRK13578 517 ATILANYLRENGIVPEKCDLNSILFLLTPAEDMAKLQQLVAMLAR-FEKH-IEDDAPLAEVLPSVYKKNPERYRGYTLRQ 594 (720)
T ss_pred HHHHHHHHHHcCCEEEecCCCeEEEEeCCCCCHHHHHHHHHHHHH-HHHh-hccccchhhhcchhhhccchhhcccchhh
Confidence 3568889988877 78899999885 555778888888874 3322 233321 11112478999
Q ss_pred hhcccc
Q 047369 218 LCDQSF 223 (225)
Q Consensus 218 icdq~~ 223 (225)
+|++.|
T Consensus 595 l~~~mh 600 (720)
T PRK13578 595 LCQEMH 600 (720)
T ss_pred HHHHHH
Confidence 998754
No 31
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=24.19 E-value=45 Score=28.36 Aligned_cols=28 Identities=14% Similarity=0.248 Sum_probs=23.8
Q ss_pred CcchhHHHHHHhcCcceEEeccccccCC
Q 047369 121 DQSFGPWFIARWLKLDLMIESGAFKDIQ 148 (225)
Q Consensus 121 dhSFgLwflAR~LkP~i~IESG~fkGhS 148 (225)
+..--|.++++..+|.-|+|.|++-|.|
T Consensus 55 ~~g~~L~~l~~~~~~~~vLEiGt~~G~s 82 (234)
T PLN02781 55 DEGLFLSMLVKIMNAKNTLEIGVFTGYS 82 (234)
T ss_pred HHHHHHHHHHHHhCCCEEEEecCcccHH
Confidence 3444577899999999999999999987
No 32
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=24.09 E-value=69 Score=32.87 Aligned_cols=60 Identities=18% Similarity=0.250 Sum_probs=43.8
Q ss_pred ccchhhhccCC----cccceEEEEec--cchhHHHHHHHHHHcCceEEEeecCCCCC----------------CCcchhh
Q 047369 158 DWGPVMKRHGI----TNLSRVLIFFY--DHQNELKRLKQALKVGFRHLVFEDNYDTG----------------TGDHYSL 215 (225)
Q Consensus 158 DW~~vl~~~g~----~D~srvLiFFD--DHqnqlkRv~qA~~aGf~hLIFeDnydtg----------------tgdhysl 215 (225)
..+++|+++|+ .|+..+|+.|- |....+.|+.+|+.. |+.+||.. ....|.|
T Consensus 513 ~l~~~L~e~gI~~E~~d~~~vL~l~s~g~t~~~~~~L~~aL~~------f~~~~d~~~~l~~~lp~l~~~~~~~y~~~~l 586 (713)
T PRK15399 513 LVAKFLDERGIVVEKTGPYNLLFLFSIGIDKTKAMGLLRGLTE------FKRAYDLNLRVKNMLPDLYAEDPDFYRNMRI 586 (713)
T ss_pred HHHHHHHHcCCEEEecCCCeEEEEeCCCCCHHHHHHHHHHHHH------HHHhhhcccchhhhchhhhhcccccccccch
Confidence 46788999988 78999999885 566778888888875 44445443 2345678
Q ss_pred hhhhcccc
Q 047369 216 RQLCDQSF 223 (225)
Q Consensus 216 rqicdq~~ 223 (225)
|++|++.|
T Consensus 587 ~~l~~~mh 594 (713)
T PRK15399 587 QDLAQGIH 594 (713)
T ss_pred HHHHHHHH
Confidence 99998743
No 33
>cd00126 PAH Pancreatic Hormone domain, a regulator of pancreatic and gastrointestinal functions; neuropeptide Y (NPY)b, peptide YY (PYY), and pancreatic polypetide (PP) are closely related; propeptide is enzymatically cleaved to yield the mature active peptide with amidated C-terminal ends; receptor binding and activation functions may reside in the N- and C-termini respectively; occurs in neurons, intestinal endocrine cells, and pancreas; exist as monomers and dimers
Probab=23.79 E-value=72 Score=21.61 Aligned_cols=23 Identities=35% Similarity=0.577 Sum_probs=16.9
Q ss_pred CCCCCCCC-----chhhhhHHhhhhhhh
Q 047369 1 MPPKPMRS-----PPLRRQYFSRFSHAS 23 (225)
Q Consensus 1 ~~~~~~~~-----~~~~~~~~sr~~~~~ 23 (225)
||+||.+. |--.++|++.++|+.
T Consensus 1 ~p~~P~~Pg~~a~~eel~~Y~~~L~~Yi 28 (36)
T cd00126 1 MPSKPENPGDDASPEELRQYLAALREYI 28 (36)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 57777654 334679999999985
No 34
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=23.43 E-value=93 Score=28.70 Aligned_cols=54 Identities=28% Similarity=0.465 Sum_probs=39.9
Q ss_pred cchhhhccCCcccceEEEEeccchhHHHHHHHHHHcCceEE-EeecCCCCCCCcchhhhhh
Q 047369 159 WGPVMKRHGITNLSRVLIFFYDHQNELKRLKQALKVGFRHL-VFEDNYDTGTGDHYSLRQL 218 (225)
Q Consensus 159 W~~vl~~~g~~D~srvLiFFDDHqnqlkRv~qA~~aGf~hL-IFeDnydtgtgdhyslrqi 218 (225)
...+++..|+.++.++ +||||-.+ -|..|++.|..+. |=.++.. -|-.|-|+||
T Consensus 166 fE~a~k~agi~~p~~t-~FfDDS~~---NI~~ak~vGl~tvlv~~~~~~--~~~d~~l~~i 220 (244)
T KOG3109|consen 166 FEKAMKVAGIDSPRNT-YFFDDSER---NIQTAKEVGLKTVLVGREHKI--KGVDYALEQI 220 (244)
T ss_pred HHHHHHHhCCCCcCce-EEEcCchh---hHHHHHhccceeEEEEeeecc--cchHHHHHHh
Confidence 4678899999888887 59999764 5788999999764 4455554 3456777776
No 35
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=22.88 E-value=68 Score=25.47 Aligned_cols=35 Identities=20% Similarity=0.228 Sum_probs=19.2
Q ss_pred hhHHhhhhhhhhhHHHHHHHHHHHhhheeecccce
Q 047369 13 RQYFSRFSHASPCLIICVLVLFGAVSLTFHYSHNL 47 (225)
Q Consensus 13 ~~~~sr~~~~~pc~~~~~~~~~~~~s~~f~~s~~~ 47 (225)
.+|+.++.--.--.||++|||+.++-++|.-|.+.
T Consensus 16 ~~~~~~l~pn~lMtILivLVIIiLlImlfqsSS~~ 50 (85)
T PF10717_consen 16 NNNLNGLNPNTLMTILIVLVIIILLIMLFQSSSNG 50 (85)
T ss_pred cccccccChhHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 34555553333334555566666667777755443
No 36
>PRK12463 chorismate synthase; Reviewed
Probab=22.49 E-value=52 Score=31.70 Aligned_cols=37 Identities=22% Similarity=0.223 Sum_probs=28.6
Q ss_pred HHHhcCcceEEeccccccCC---C-----CCCcccccccchhhhccC
Q 047369 129 IARWLKLDLMIESGAFKDIQ---P-----GFCGFGSIDWGPVMKRHG 167 (225)
Q Consensus 129 lAR~LkP~i~IESG~fkGhS---P-----df~DfgsvDW~~vl~~~g 167 (225)
=+|.-+..+-|-||+|.|.| | .-.|+. .|.+.|...+
T Consensus 48 t~r~E~D~v~ilSGv~~G~TtGtPI~~~I~N~D~~--nw~~~m~~~~ 92 (390)
T PRK12463 48 RMQIETDTVEIVSGVRHGMTLGSPITLIVKNDDFK--HWTKVMGAEP 92 (390)
T ss_pred CCCCCCCceEEeecccCCCcCCCCeEEEEEccCCC--cchhccCccc
Confidence 47888899999999999999 6 223554 3888887665
No 37
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=21.48 E-value=1.4e+02 Score=22.36 Aligned_cols=55 Identities=20% Similarity=0.316 Sum_probs=34.1
Q ss_pred cceEEeccccccCCCCCCcccccccchhhhccCCcccceEEEEeccchhHHHHHHHHHHcCceEE
Q 047369 135 LDLMIESGAFKDIQPGFCGFGSIDWGPVMKRHGITNLSRVLIFFYDHQNELKRLKQALKVGFRHL 199 (225)
Q Consensus 135 P~i~IESG~fkGhSPdf~DfgsvDW~~vl~~~g~~D~srvLiFFDDHqnqlkRv~qA~~aGf~hL 199 (225)
.+.+|-|.....-.|+ .--|..+++..+. +.+++ ++++|... -++.|.++|++.+
T Consensus 127 f~~i~~~~~~~~~KP~-----~~~~~~~~~~~~~-~~~~~-~~vgD~~~---di~aA~~~G~~~i 181 (183)
T TIGR01509 127 FDVVIFSGDVGRGKPD-----PDIYLLALKKLGL-KPEEC-LFVDDSPA---GIEAAKAAGMHTV 181 (183)
T ss_pred CCEEEEcCCCCCCCCC-----HHHHHHHHHHcCC-CcceE-EEEcCCHH---HHHHHHHcCCEEE
Confidence 3566665544333454 1124555666654 55555 57799864 5899999999764
No 38
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=21.19 E-value=82 Score=28.71 Aligned_cols=67 Identities=10% Similarity=0.164 Sum_probs=42.7
Q ss_pred HHHHhcCcceEEeccccccCCCCCCcc-cccc-cchhhhccCCcccce---EEEEeccchhHHHHHHHHHHcCceEEEee
Q 047369 128 FIARWLKLDLMIESGAFKDIQPGFCGF-GSID-WGPVMKRHGITNLSR---VLIFFYDHQNELKRLKQALKVGFRHLVFE 202 (225)
Q Consensus 128 flAR~LkP~i~IESG~fkGhSPdf~Df-gsvD-W~~vl~~~g~~D~sr---vLiFFDDHqnqlkRv~qA~~aGf~hLIFe 202 (225)
-.|..++-.+||+.. |.-..| +..+ ....++.... .++ =++.==||-..+..+++|.++||+-..||
T Consensus 36 ~AAee~~sPvIl~~~------~~~~~~~~~~~~~~~~~~~~A~--~~~~~vPV~lHLDHg~~~e~i~~ai~~GftSVM~D 107 (286)
T PRK08610 36 EASQEENAPVILGVS------EGAARYMSGFYTVVKMVEGLMH--DLNITIPVAIHLDHGSSFEKCKEAIDAGFTSVMID 107 (286)
T ss_pred HHHHHHCCCEEEEcC------ccHHhhcCcHHHHHHHHHHHHH--HcCCCCCEEEECCCCCCHHHHHHHHHcCCCEEEEe
Confidence 346778888898753 322233 2122 2333332211 222 26677789988999999999999999998
No 39
>cd01104 HTH_MlrA-CarA Helix-Turn-Helix DNA binding domain of the transcription regulators MlrA and CarA. Helix-turn-helix (HTH) transcription regulator MlrA (merR-like regulator A), N-terminal domain. The MlrA protein, also known as YehV, has been shown to control cell-cell aggregation by co-regulating the expression of curli and extracellular matrix production in Escherichia coli and Salmonella typhimurium. Its close homolog, CarA from Myxococcus xanthus, is involved in activation of the carotenoid biosynthesis genes by light. These proteins belong to the MerR superfamily of transcription regulators that promote expression of several stress regulon genes by reconfiguring the spacer between the -35 and -10 promoter elements. Their conserved N-terminal domains contain predicted HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules. Many MlrA- and CarA-like proteins in this group appear to lack the long dimerization helix seen i
Probab=20.93 E-value=74 Score=21.24 Aligned_cols=23 Identities=13% Similarity=0.255 Sum_probs=19.1
Q ss_pred EEEeccchhHHHHHHHHHHcCce
Q 047369 175 LIFFYDHQNELKRLKQALKVGFR 197 (225)
Q Consensus 175 LiFFDDHqnqlkRv~qA~~aGf~ 197 (225)
-.|=++++.+++++++.++.|+.
T Consensus 37 r~yt~~~v~~l~~i~~l~~~g~~ 59 (68)
T cd01104 37 RLYSEADVARLRLIRRLTSEGVR 59 (68)
T ss_pred eecCHHHHHHHHHHHHHHHCCCC
Confidence 44557789999999999999974
No 40
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=20.84 E-value=71 Score=29.02 Aligned_cols=68 Identities=15% Similarity=0.175 Sum_probs=44.1
Q ss_pred HHHHHhcCcceEEeccccccCCCCCCcc-cccc-cchhhhccCCcccce---EEEEeccchhHHHHHHHHHHcCceEEEe
Q 047369 127 WFIARWLKLDLMIESGAFKDIQPGFCGF-GSID-WGPVMKRHGITNLSR---VLIFFYDHQNELKRLKQALKVGFRHLVF 201 (225)
Q Consensus 127 wflAR~LkP~i~IESG~fkGhSPdf~Df-gsvD-W~~vl~~~g~~D~sr---vLiFFDDHqnqlkRv~qA~~aGf~hLIF 201 (225)
=-.|..++-.+||+. +|.-..| ...+ +...++.... .++ =++.==||-..+..+++|.++||+-+.|
T Consensus 35 i~AAe~~~sPvIiq~------~~~~~~~~~~~~~~~~~~~~~a~--~~~~~VPV~lHLDHg~~~e~i~~ai~~GftSVM~ 106 (285)
T PRK07709 35 LAAAEEEKSPVILGV------SEGAARHMTGFKTVVAMVKALIE--EMNITVPVAIHLDHGSSFEKCKEAIDAGFTSVMI 106 (285)
T ss_pred HHHHHHHCCCEEEEc------CcchhhhcCCHHHHHHHHHHHHH--HcCCCCcEEEECCCCCCHHHHHHHHHcCCCEEEE
Confidence 334677888888876 3433344 2221 2333332221 222 2667779999999999999999999999
Q ss_pred e
Q 047369 202 E 202 (225)
Q Consensus 202 e 202 (225)
|
T Consensus 107 D 107 (285)
T PRK07709 107 D 107 (285)
T ss_pred e
Confidence 8
No 41
>PF12646 DUF3783: Domain of unknown function (DUF3783); InterPro: IPR016621 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=20.80 E-value=79 Score=22.08 Aligned_cols=19 Identities=42% Similarity=0.733 Sum_probs=16.7
Q ss_pred ccccccccchhhHHHHHHH
Q 047369 83 KMEKRVEWTTKDLIEVLEE 101 (225)
Q Consensus 83 k~~~~veWt~~dLL~~L~e 101 (225)
-++...+|+-++|+.+|.+
T Consensus 34 lT~tN~~Wt~~~L~~El~~ 52 (58)
T PF12646_consen 34 LTPTNINWTLKDLLEELKE 52 (58)
T ss_pred ECCCcccCcHHHHHHHHHH
Confidence 6778899999999999864
No 42
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=20.32 E-value=86 Score=29.03 Aligned_cols=78 Identities=17% Similarity=0.249 Sum_probs=46.6
Q ss_pred hHHHHHHhcCcceEEeccccccCCCCCCccccccc-chhhhccCCcccc-eEEEEeccchhHHHHHHHHHHcCceEEEee
Q 047369 125 GPWFIARWLKLDLMIESGAFKDIQPGFCGFGSIDW-GPVMKRHGITNLS-RVLIFFYDHQNELKRLKQALKVGFRHLVFE 202 (225)
Q Consensus 125 gLwflAR~LkP~i~IESG~fkGhSPdf~DfgsvDW-~~vl~~~g~~D~s-rvLiFFDDHqnqlkRv~qA~~aGf~hLIFe 202 (225)
+.-=.|..++-.+||.. ||.-..|...+. ..+++... -+.+ -=++.==||-....-+++|.++||+-..||
T Consensus 32 avi~AAe~~~sPvIlq~------s~~~~~~~g~~~~~~~~~~~a-~~~~~VPValHLDHg~~~e~i~~ai~~GftSVM~D 104 (307)
T PRK05835 32 AIFEAGNEENSPLFIQA------SEGAIKYMGIDMAVGMVKIMC-ERYPHIPVALHLDHGTTFESCEKAVKAGFTSVMID 104 (307)
T ss_pred HHHHHHHHHCCCEEEEc------CccHHhhCChHHHHHHHHHHH-HhcCCCeEEEECCCCCCHHHHHHHHHcCCCEEEEe
Confidence 34445777888888873 332223322221 12221110 1121 135566689999999999999999999998
Q ss_pred cCCCCCCCcchhhh
Q 047369 203 DNYDTGTGDHYSLR 216 (225)
Q Consensus 203 Dnydtgtgdhyslr 216 (225)
|.|+++.
T Consensus 105 -------gS~l~~e 111 (307)
T PRK05835 105 -------ASHHAFE 111 (307)
T ss_pred -------CCCCCHH
Confidence 4466653
No 43
>PRK08185 hypothetical protein; Provisional
Probab=20.22 E-value=74 Score=28.87 Aligned_cols=71 Identities=13% Similarity=0.181 Sum_probs=44.9
Q ss_pred HHHHHHhcCcceEEeccccccCCCCCCcccccccchhhhccCCcccceEEEEeccchhHHHHHHHHHHcCceEEEeec
Q 047369 126 PWFIARWLKLDLMIESGAFKDIQPGFCGFGSIDWGPVMKRHGITNLSRVLIFFYDHQNELKRLKQALKVGFRHLVFED 203 (225)
Q Consensus 126 LwflAR~LkP~i~IESG~fkGhSPdf~DfgsvDW~~vl~~~g~~D~srvLiFFDDHqnqlkRv~qA~~aGf~hLIFeD 203 (225)
.=-.|..++-.+||.. +|.-.+|....+...++.... ..+==++.==||-..+..+++|.+.||+-+.||.
T Consensus 29 vi~AAee~~sPvIl~~------~~~~~~~~~~~~~~~~~~~a~-~~~vPV~lHLDHg~~~e~i~~ai~~Gf~SVM~D~ 99 (283)
T PRK08185 29 VVEEAEANNAPAIIAI------HPNELDFLGDNFFAYVRERAK-RSPVPFVIHLDHGATIEDVMRAIRCGFTSVMIDG 99 (283)
T ss_pred HHHHHHHhCCCEEEEe------CcchhhhccHHHHHHHHHHHH-HCCCCEEEECCCCCCHHHHHHHHHcCCCEEEEeC
Confidence 3345677788888864 232233333345554443321 0111255666899999999999999999999983
No 44
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=20.19 E-value=2.4e+02 Score=29.59 Aligned_cols=64 Identities=14% Similarity=0.268 Sum_probs=44.3
Q ss_pred EEe--ccccccCCCCCCcccccccchhhhccCCcccceEEEE------------eccchhHHHHHHHHHHcCceEEEeec
Q 047369 138 MIE--SGAFKDIQPGFCGFGSIDWGPVMKRHGITNLSRVLIF------------FYDHQNELKRLKQALKVGFRHLVFED 203 (225)
Q Consensus 138 ~IE--SG~fkGhSPdf~DfgsvDW~~vl~~~g~~D~srvLiF------------FDDHqnqlkRv~qA~~aGf~hLIFeD 203 (225)
+|| +|-|..+||-| |.+.++.+ .+....+..||||. ||=..-++ ++.++++|++..+.+.
T Consensus 523 ~vd~~a~e~~~~~~~~--y~~~~~~~--~~~~~~~~~kvlvlG~G~~rig~~~efd~~~v~~--i~al~~~G~~vI~v~~ 596 (1050)
T TIGR01369 523 RVDTCAAEFEAQTPYL--YSTYEGER--DDVPFTDKKKVLVLGSGPNRIGQGVEFDYCCVHA--VLALRELGYETIMINY 596 (1050)
T ss_pred eecCCCCcccCCCCee--EecCCCCC--CcccCCCCceEEEecCcccccccccccchHHHHH--HHHHHhCCCEEEEEec
Confidence 556 37777777753 33333332 23334567788876 77777776 7889999999999999
Q ss_pred CCCC
Q 047369 204 NYDT 207 (225)
Q Consensus 204 nydt 207 (225)
|-.|
T Consensus 597 npet 600 (1050)
T TIGR01369 597 NPET 600 (1050)
T ss_pred CCcc
Confidence 9777
No 45
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=20.16 E-value=96 Score=31.88 Aligned_cols=58 Identities=21% Similarity=0.336 Sum_probs=42.4
Q ss_pred ccchhhhccCC----cccceEEEEec--cchhHHHHHHHHHHcCceEEEeecCCCC-------------CCC---cchhh
Q 047369 158 DWGPVMKRHGI----TNLSRVLIFFY--DHQNELKRLKQALKVGFRHLVFEDNYDT-------------GTG---DHYSL 215 (225)
Q Consensus 158 DW~~vl~~~g~----~D~srvLiFFD--DHqnqlkRv~qA~~aGf~hLIFeDnydt-------------gtg---dhysl 215 (225)
..+++|+++|+ .|+..+|+.|- +......|+.+|+.. |+++||. ... ..|.|
T Consensus 513 ~v~~~L~e~gI~~E~~d~~~iLfl~s~g~t~~~~~~L~~aL~~------f~~~~d~n~~l~~vlP~~~~~~~~~y~~~~l 586 (714)
T PRK15400 513 IVAKYLDEHGIVVEKTGPYNLLFLFSIGIDKTKALSLLRALTD------FKRAFDLNLRVKNMLPSLYREDPEFYENMRI 586 (714)
T ss_pred HHHHHHHHcCCEEEecCCCeEEEEeCCCCCHHHHHHHHHHHHH------HHHhhccccchhhccchhhhcccchhccchh
Confidence 47789999988 78999999885 666788888888874 3444432 222 46789
Q ss_pred hhhhcc
Q 047369 216 RQLCDQ 221 (225)
Q Consensus 216 rqicdq 221 (225)
||+|++
T Consensus 587 ~~l~~~ 592 (714)
T PRK15400 587 QELAQN 592 (714)
T ss_pred hHHHHH
Confidence 999974
No 46
>KOG4104 consensus Ganglioside-induced differentiation associated protein 3 [Signal transduction mechanisms]
Probab=20.13 E-value=51 Score=27.22 Aligned_cols=16 Identities=50% Similarity=0.725 Sum_probs=12.1
Q ss_pred EEeccchh---HHHHHHHH
Q 047369 176 IFFYDHQN---ELKRLKQA 191 (225)
Q Consensus 176 iFFDDHqn---qlkRv~qA 191 (225)
+|+||||. +-||++.-
T Consensus 77 LfrDeHqdF~deqkrLkkl 95 (113)
T KOG4104|consen 77 LFRDEHQDFRDEQKRLKKL 95 (113)
T ss_pred hhhhhHHHHHHHHHHHHHh
Confidence 49999995 67777654
Done!