Query 047369
Match_columns 225
No_of_seqs 18 out of 20
Neff 2.1
Searched_HMMs 29240
Date Mon Mar 25 18:21:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047369.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047369hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3oq0_A DBF4, protein DNA52; DD 75.9 0.64 2.2E-05 38.3 0.4 37 155-198 13-58 (151)
2 2wk1_A NOVP; transferase, O-me 51.7 4.5 0.00015 34.6 1.0 26 123-148 91-120 (282)
3 1fjk_A Cardiac phospholamban; 48.0 18 0.00062 25.3 3.4 32 6-38 18-49 (52)
4 4f4e_A Aromatic-amino-acid ami 37.2 34 0.0012 28.2 4.1 126 93-220 95-256 (420)
5 3umg_A Haloacid dehalogenase; 33.3 66 0.0022 23.2 4.7 46 161-211 177-222 (254)
6 1oj7_A Hypothetical oxidoreduc 31.8 54 0.0019 28.4 4.7 32 172-204 51-86 (408)
7 2kz0_A BOLA family protein; BO 31.7 20 0.00068 25.8 1.6 34 187-222 10-45 (76)
8 3dlm_A Histone-lysine N-methyl 31.3 12 0.0004 32.3 0.4 15 169-183 99-113 (213)
9 1yf3_A DNA adenine methylase; 30.9 43 0.0015 27.6 3.8 76 126-208 140-217 (259)
10 3umc_A Haloacid dehalogenase; 30.0 60 0.0021 23.7 4.0 46 162-212 182-227 (254)
11 3nhm_A Response regulator; pro 26.4 82 0.0028 20.7 3.9 28 175-202 7-34 (133)
12 3ilx_A First ORF in transposon 26.2 28 0.00094 26.4 1.6 28 180-210 19-46 (143)
13 3kcn_A Adenylate cyclase homol 25.5 83 0.0028 21.6 3.9 28 175-202 7-34 (151)
14 2l2l_B Methyl-CPG-binding doma 25.3 29 0.00099 22.8 1.4 21 174-194 5-25 (36)
15 1xl7_A COT, peroxisomal carnit 24.9 16 0.00055 34.3 0.1 24 111-134 494-518 (612)
16 4adb_A Succinylornithine trans 23.1 2.9E+02 0.0098 22.0 7.5 24 184-209 205-229 (406)
17 2i6x_A Hydrolase, haloacid deh 23.0 88 0.003 22.3 3.8 39 161-204 158-196 (211)
18 1o2d_A Alcohol dehydrogenase, 22.9 1.2E+02 0.004 26.0 5.1 32 172-203 41-77 (371)
19 2j48_A Two-component sensor ki 22.8 1.4E+02 0.0047 18.6 4.3 25 176-200 5-30 (119)
20 1dtd_B Metallocarboxypeptidase 22.6 18 0.00062 25.8 0.0 13 77-91 34-46 (61)
21 3i28_A Epoxide hydrolase 2; ar 22.6 76 0.0026 25.6 3.7 39 161-204 168-206 (555)
22 3kzp_A LMO0111 protein, putati 22.4 97 0.0033 23.6 4.1 33 184-218 130-162 (235)
23 1v9j_A BOLA-like protein riken 22.1 27 0.00094 27.0 0.9 25 197-221 46-70 (113)
24 3m8l_A Capsid protein; FCV-5 c 21.9 14 0.00048 35.7 -0.9 24 160-183 366-389 (534)
25 3foj_A Uncharacterized protein 21.5 1.9E+02 0.0064 19.5 5.1 46 157-202 41-87 (100)
26 4gel_A Mitochondrial cardiolip 21.4 1.2E+02 0.004 23.2 4.4 32 182-213 84-116 (220)
27 2gkg_A Response regulator homo 21.4 1.3E+02 0.0045 19.2 4.1 29 173-202 7-36 (127)
28 1fg7_A Histidinol phosphate am 21.2 3E+02 0.01 21.9 7.0 115 92-218 60-199 (356)
29 3kto_A Response regulator rece 20.7 1.2E+02 0.0041 20.4 3.9 29 175-203 9-38 (136)
30 3lua_A Response regulator rece 20.3 1.4E+02 0.0047 20.0 4.1 30 173-203 6-37 (140)
No 1
>3oq0_A DBF4, protein DNA52; DDK, BRCT, RAD53, replication checkpoint, FHA domain, regula subunit of DDK, CDC7, phosphorylation, nuclear; 2.70A {Saccharomyces cerevisiae}
Probab=75.90 E-value=0.64 Score=38.33 Aligned_cols=37 Identities=32% Similarity=0.586 Sum_probs=21.7
Q ss_pred cccccchhhhccCCcccceEEEEec--c-------chhHHHHHHHHHHcCceE
Q 047369 155 GSIDWGPVMKRHGITNLSRVLIFFY--D-------HQNELKRLKQALKVGFRH 198 (225)
Q Consensus 155 gsvDW~~vl~~~g~~D~srvLiFFD--D-------HqnqlkRv~qA~~aGf~h 198 (225)
|-+.|.+.|+.. ..|||| | ++++++|-++-+++||+.
T Consensus 13 ~~~~WrkIM~r~-------s~iYFdt~~~~~~~~~~~~~l~k~~~llkk~f~~ 58 (151)
T 3oq0_A 13 GLVPRGSHMKRD-------SRIYFDITDDVEMNTYNKSKMDKRRDLLKRGFLT 58 (151)
T ss_dssp --------CCCC-------CEEEECCCCSSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHhccC-------CEEEEeCCCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 557899999543 468999 4 788999999888766554
No 2
>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}
Probab=51.74 E-value=4.5 Score=34.63 Aligned_cols=26 Identities=8% Similarity=-0.065 Sum_probs=21.0
Q ss_pred chhHHHHHHhcC----cceEEeccccccCC
Q 047369 123 SFGPWFIARWLK----LDLMIESGAFKDIQ 148 (225)
Q Consensus 123 SFgLwflAR~Lk----P~i~IESG~fkGhS 148 (225)
...|+.+++.+. |..|+|-|+++|.|
T Consensus 91 ~~~L~~l~~~v~~~~~pg~IlEiGv~~G~S 120 (282)
T 2wk1_A 91 LENIRQCVEDVIGNNVPGDLVETGVWRGGA 120 (282)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEEECCTTSHH
T ss_pred HHHHHHHHHHHHhcCCCCcEEEeecCchHH
Confidence 445677777654 99999999999988
No 3
>1fjk_A Cardiac phospholamban; helix, membrane protein; NMR {Sus scrofa} SCOP: j.37.1.1 PDB: 1fjp_A 2kyv_A 1zll_A 2hyn_A 1n7l_A 2kb7_P 1plp_A
Probab=48.05 E-value=18 Score=25.34 Aligned_cols=32 Identities=25% Similarity=0.468 Sum_probs=22.6
Q ss_pred CCCchhhhhHHhhhhhhhhhHHHHHHHHHHHhh
Q 047369 6 MRSPPLRRQYFSRFSHASPCLIICVLVLFGAVS 38 (225)
Q Consensus 6 ~~~~~~~~~~~sr~~~~~pc~~~~~~~~~~~~s 38 (225)
+.-||-|++-+..+ +.-.|+|+.|++++-++.
T Consensus 18 ie~~~qarqnlqel-fvnfclilicllli~iiv 49 (52)
T 1fjk_A 18 IEMPQQARQNLQNL-FINFCLILIFLLLICIIV 49 (52)
T ss_dssp SSSHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 45678888877777 677898888876655443
No 4
>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*
Probab=37.18 E-value=34 Score=28.16 Aligned_cols=126 Identities=8% Similarity=0.082 Sum_probs=61.7
Q ss_pred hhHHHHHHHhhhhccccccc----ccccCCCCCcchhHHH-HHHhcCc--ceEEeccccccCC---------CCCCcc--
Q 047369 93 KDLIEVLEEFVPIYETRPVK----NNIYGMGFDQSFGPWF-IARWLKL--DLMIESGAFKDIQ---------PGFCGF-- 154 (225)
Q Consensus 93 ~dLL~~L~eFvpiY~trPIk----nn~~GmGFdhSFgLwf-lAR~LkP--~i~IESG~fkGhS---------Pdf~Df-- 154 (225)
.++.+.+.+++.-....++. +=...+|-.++..+=+ ++..++| .+++++-.|-++. +..+++
T Consensus 95 ~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~t~al~~~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~ 174 (420)
T 4f4e_A 95 AAYDASVQKLLLGDDSPLIAAGRVVTAQALGGTGALKIGADFLRTLNPKAKVAISDPSWENHRALFDMAGFEVVAYPYYD 174 (420)
T ss_dssp HHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHTTCCEEEEECEE
T ss_pred HHHHHHHHHHhcCCCccccccCceEEEECCccHHHHHHHHHHHHHhCCCCEEEEeCCCcHhHHHHHHHcCCeEEEeeeec
Confidence 56777777776332221111 1233444333332221 1223455 5899998887664 211111
Q ss_pred ---cccccchhhhccCCcccceEEEEeccch---------hHHHHHHH-HHHcCceEEEeecCCCCCCC-----cchhhh
Q 047369 155 ---GSIDWGPVMKRHGITNLSRVLIFFYDHQ---------NELKRLKQ-ALKVGFRHLVFEDNYDTGTG-----DHYSLR 216 (225)
Q Consensus 155 ---gsvDW~~vl~~~g~~D~srvLiFFDDHq---------nqlkRv~q-A~~aGf~hLIFeDnydtgtg-----dhyslr 216 (225)
..+|.+.+.+..........+++.--.+ +++++|.+ |.+.|+ +|+.|+.-.+.+ ++.+++
T Consensus 175 ~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~--~li~De~y~~~~~~~~~~~~~~~ 252 (420)
T 4f4e_A 175 AKTNGVNFDGMLAALNGYEPGTIVVLHACCHNPTGVDLNDAQWAQVVEVVKARRL--VPFLDIAYQGFGESIEADAAAVR 252 (420)
T ss_dssp TTTTEECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTC--EEEEEESCTTSSSCTTGGGHHHH
T ss_pred cccCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCc--EEEEccccccccCCcchhhHHHH
Confidence 3345555433221111222344433222 46788766 556664 566666655443 467888
Q ss_pred hhhc
Q 047369 217 QLCD 220 (225)
Q Consensus 217 qicd 220 (225)
.+.+
T Consensus 253 ~~~~ 256 (420)
T 4f4e_A 253 LFAA 256 (420)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7754
No 5
>3umg_A Haloacid dehalogenase; defluorinase, hydrolase; 2.25A {Rhodococcus jostii}
Probab=33.30 E-value=66 Score=23.24 Aligned_cols=46 Identities=15% Similarity=0.198 Sum_probs=32.4
Q ss_pred hhhhccCCcccceEEEEeccchhHHHHHHHHHHcCceEEEeecCCCCCCCc
Q 047369 161 PVMKRHGITNLSRVLIFFYDHQNELKRLKQALKVGFRHLVFEDNYDTGTGD 211 (225)
Q Consensus 161 ~vl~~~g~~D~srvLiFFDDHqnqlkRv~qA~~aGf~hLIFeDnydtgtgd 211 (225)
.+++..| ++++++ ++|+|..| =|+-|.++|+..+...+...+|.++
T Consensus 177 ~~~~~lg-i~~~~~-~~iGD~~~---Di~~a~~aG~~~~~~~~~~~~g~~~ 222 (254)
T 3umg_A 177 RTAQVLG-LHPGEV-MLAAAHNG---DLEAAHATGLATAFILRPVEHGPHQ 222 (254)
T ss_dssp HHHHHTT-CCGGGE-EEEESCHH---HHHHHHHTTCEEEEECCTTTTCTTC
T ss_pred HHHHHcC-CChHHE-EEEeCChH---hHHHHHHCCCEEEEEecCCcCCCCc
Confidence 3445554 456665 57888866 5678999999999998766666543
No 6
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2
Probab=31.76 E-value=54 Score=28.40 Aligned_cols=32 Identities=34% Similarity=0.417 Sum_probs=27.1
Q ss_pred ceEEEEeccc-hh---HHHHHHHHHHcCceEEEeecC
Q 047369 172 SRVLIFFYDH-QN---ELKRLKQALKVGFRHLVFEDN 204 (225)
Q Consensus 172 srvLiFFDDH-qn---qlkRv~qA~~aGf~hLIFeDn 204 (225)
+|+|+.-|+. .. -+++|+++++ |++..+|++-
T Consensus 51 ~r~liVtd~~~~~~~g~~~~v~~~L~-g~~~~~f~~v 86 (408)
T 1oj7_A 51 ARVLITYGGGSVKKTGVLDQVLDALK-GMDVLEFGGI 86 (408)
T ss_dssp CEEEEEECSSHHHHHSHHHHHHHHTT-TSEEEEECCC
T ss_pred CEEEEEECCchhhhccHHHHHHHHhC-CCEEEEeCCc
Confidence 6999999998 44 3799999998 9999999864
No 7
>2kz0_A BOLA family protein; BOLA protein family, human monocytotropic ehrlichiosis, STRE response, structural genomics; NMR {Ehrlichia chaffeensis}
Probab=31.74 E-value=20 Score=25.75 Aligned_cols=34 Identities=21% Similarity=0.454 Sum_probs=23.6
Q ss_pred HHHHHHHcCc--eEEEeecCCCCCCCcchhhhhhhccc
Q 047369 187 RLKQALKVGF--RHLVFEDNYDTGTGDHYSLRQLCDQS 222 (225)
Q Consensus 187 Rv~qA~~aGf--~hLIFeDnydtgtgdhyslrqicdq~ 222 (225)
+|++.++..| ++|--+|+. |.|.||.+.=+.+++
T Consensus 10 ~I~~~L~~~l~~~~l~V~d~S--G~g~Hf~v~IVS~~F 45 (76)
T 2kz0_A 10 QLELLIRNAFPEAEITVTSLV--GDNNHYSIKVISSQF 45 (76)
T ss_dssp HHHHHHHHHCTTEEEEEECCS--STTSCCEEEEEEGGG
T ss_pred HHHHHHHhhCCCcEEEEEECC--CCccEEEEEEEchHh
Confidence 4445444444 688888877 899999987666653
No 8
>3dlm_A Histone-lysine N-methyltransferase setdb1; setdb1_human, structural genomics, structural genomics consortium, SGC, alternative splicing; 1.77A {Homo sapiens}
Probab=31.31 E-value=12 Score=32.31 Aligned_cols=15 Identities=47% Similarity=0.556 Sum_probs=11.6
Q ss_pred cccceEEEEeccchh
Q 047369 169 TNLSRVLIFFYDHQN 183 (225)
Q Consensus 169 ~D~srvLiFFDDHqn 183 (225)
.+..|.||||||+-.
T Consensus 99 ~N~~RyLVFFDDG~~ 113 (213)
T 3dlm_A 99 KNKLRFLIFFDDGYA 113 (213)
T ss_dssp TTTSCEEEEETTSCE
T ss_pred CCCceEEEEEeCCCc
Confidence 467799999999743
No 9
>1yf3_A DNA adenine methylase; T4DAM, methyltransferase, transferase-DNA complex; HET: DNA SAH; 2.29A {Enterobacteria phage T4} SCOP: c.66.1.28 PDB: 1yfj_A* 1yfl_A* 1q0s_A* 1q0t_A*
Probab=30.89 E-value=43 Score=27.63 Aligned_cols=76 Identities=16% Similarity=0.136 Sum_probs=43.0
Q ss_pred HHHHHHhcCcceEEeccccccC--CCCCCcccccccchhhhccCCcccceEEEEeccchhHHHHHHHHHHcCceEEEeec
Q 047369 126 PWFIARWLKLDLMIESGAFKDI--QPGFCGFGSIDWGPVMKRHGITNLSRVLIFFYDHQNELKRLKQALKVGFRHLVFED 203 (225)
Q Consensus 126 LwflAR~LkP~i~IESG~fkGh--SPdf~DfgsvDW~~vl~~~g~~D~srvLiFFDDHqnqlkRv~qA~~aGf~hLIFeD 203 (225)
|..+++.|+ .+.||.+-|+-. +|+ ||...|= .++.... +-..- -=.+||+.=+..+++..++|.+.+|=.|
T Consensus 140 l~~~~~~l~-~v~i~~~Df~~~i~~~~--~fvY~DP-PY~~~~~--~Y~~~-f~~~d~~~L~~~l~~l~~~g~~~~lS~~ 212 (259)
T 1yf3_A 140 FNHFKQNCD-KIIFSSLHFKDVKILDG--DFVYVDP-PYLITVA--DYNKF-WSEDEEKDLLNLLDSLNDRGIKFGLSNV 212 (259)
T ss_dssp HHHHHHHGG-GEEEECCCGGGCCCCTT--EEEEECC-CCTTSCC--GGGGG-CCHHHHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred HHHHHHHhc-CCEEEcCCHHHHhCCCC--eEEEECC-CCCCccc--hhccC-CCHHHHHHHHHHHHHHhhCCCEEEEEee
Confidence 456677777 788888877764 332 2222220 0000000 00000 0025888888888888888999999888
Q ss_pred CCCCC
Q 047369 204 NYDTG 208 (225)
Q Consensus 204 nydtg 208 (225)
|.+++
T Consensus 213 d~~~~ 217 (259)
T 1yf3_A 213 LEHHG 217 (259)
T ss_dssp SEETT
T ss_pred cCccc
Confidence 76543
No 10
>3umc_A Haloacid dehalogenase; HY; 2.15A {Pseudomonas aeruginosa}
Probab=29.97 E-value=60 Score=23.72 Aligned_cols=46 Identities=17% Similarity=0.289 Sum_probs=33.3
Q ss_pred hhhccCCcccceEEEEeccchhHHHHHHHHHHcCceEEEeecCCCCCCCcc
Q 047369 162 VMKRHGITNLSRVLIFFYDHQNELKRLKQALKVGFRHLVFEDNYDTGTGDH 212 (225)
Q Consensus 162 vl~~~g~~D~srvLiFFDDHqnqlkRv~qA~~aGf~hLIFeDnydtgtgdh 212 (225)
+++..| ++++++ ++|+|..|- |+-|.++|+..+.+.+...+|.+..
T Consensus 182 ~~~~lg-i~~~~~-~~iGD~~~D---i~~a~~aG~~~~~~~~~~~~g~~~~ 227 (254)
T 3umc_A 182 ACRLLD-LPPQEV-MLCAAHNYD---LKAARALGLKTAFIARPLEYGPGQS 227 (254)
T ss_dssp HHHHHT-CCGGGE-EEEESCHHH---HHHHHHTTCEEEEECCTTTTCTTCC
T ss_pred HHHHcC-CChHHE-EEEcCchHh---HHHHHHCCCeEEEEecCCccCCCCC
Confidence 445554 456665 678888654 6788999999999998877776544
No 11
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=26.38 E-value=82 Score=20.74 Aligned_cols=28 Identities=11% Similarity=0.065 Sum_probs=19.3
Q ss_pred EEEeccchhHHHHHHHHHHcCceEEEee
Q 047369 175 LIFFYDHQNELKRLKQALKVGFRHLVFE 202 (225)
Q Consensus 175 LiFFDDHqnqlkRv~qA~~aGf~hLIFe 202 (225)
+++-||+......+++.++.|++...++
T Consensus 7 ilivdd~~~~~~~l~~~l~~~~~v~~~~ 34 (133)
T 3nhm_A 7 VLIVENSWTMRETLRLLLSGEFDCTTAA 34 (133)
T ss_dssp EEEECSCHHHHHHHHHHHTTTSEEEEES
T ss_pred EEEEcCCHHHHHHHHHHHhCCcEEEEEC
Confidence 4455777777777777777777765554
No 12
>3ilx_A First ORF in transposon ISC1904; sulfolobus solfataricus P2, structural G PSI-2, protein structure initiative; 2.00A {Sulfolobus solfataricus} PDB: 3lhf_A
Probab=26.22 E-value=28 Score=26.37 Aligned_cols=28 Identities=29% Similarity=0.412 Sum_probs=22.7
Q ss_pred cchhHHHHHHHHHHcCceEEEeecCCCCCCC
Q 047369 180 DHQNELKRLKQALKVGFRHLVFEDNYDTGTG 210 (225)
Q Consensus 180 DHqnqlkRv~qA~~aGf~hLIFeDnydtgtg 210 (225)
+-.+|...+++..+ |.+. ||.|.. ||+.
T Consensus 19 sl~~Q~~~l~~~~~-g~~~-i~~D~~-SG~~ 46 (143)
T 3ilx_A 19 DLANQVKYLEEQVK-EYDL-VITDIG-SGLN 46 (143)
T ss_dssp HHHHHHHHHHHHCS-CCSE-EEEEES-CTTC
T ss_pred cHHHHHHHHHHHhC-CCeE-EEEcCc-cccc
Confidence 56788888888766 9988 999987 7765
No 13
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=25.46 E-value=83 Score=21.57 Aligned_cols=28 Identities=25% Similarity=0.366 Sum_probs=18.4
Q ss_pred EEEeccchhHHHHHHHHHHcCceEEEee
Q 047369 175 LIFFYDHQNELKRLKQALKVGFRHLVFE 202 (225)
Q Consensus 175 LiFFDDHqnqlkRv~qA~~aGf~hLIFe 202 (225)
+++-||+....+.+++.++.|++...++
T Consensus 7 ILivdd~~~~~~~l~~~L~~~~~v~~~~ 34 (151)
T 3kcn_A 7 ILLVDDDYSLLNTLKRNLSFDFEVTTCE 34 (151)
T ss_dssp EEEECSCHHHHHHHHHHHTTTSEEEEES
T ss_pred EEEEeCCHHHHHHHHHHhccCceEEEeC
Confidence 3445777777777777777676665554
No 14
>2l2l_B Methyl-CPG-binding domain protein 2; DNA methylation, coiled-coil, NURD, MBD2, P66alpha, transfer; NMR {Homo sapiens}
Probab=25.25 E-value=29 Score=22.80 Aligned_cols=21 Identities=19% Similarity=0.186 Sum_probs=15.2
Q ss_pred EEEEeccchhHHHHHHHHHHc
Q 047369 174 VLIFFYDHQNELKRLKQALKV 194 (225)
Q Consensus 174 vLiFFDDHqnqlkRv~qA~~a 194 (225)
++|-=+|=.+|-.||++|+++
T Consensus 5 ~~Vte~DIr~QE~rV~~aR~r 25 (36)
T 2l2l_B 5 FIVTDEDIRKQEERVQQVRKK 25 (36)
T ss_dssp CCCCHHHHHHHHHHHHHHHHH
T ss_pred eeeCHHHHHHHHHHHHHHHHH
Confidence 344446777899999988875
No 15
>1xl7_A COT, peroxisomal carnitine O-octanoyltransferase; selenomethionine, hepes; HET: EPE; 2.00A {Mus musculus} SCOP: c.43.1.3 c.43.1.3 PDB: 1xl8_A* 1xmd_A* 1xmc_A*
Probab=24.88 E-value=16 Score=34.34 Aligned_cols=24 Identities=33% Similarity=0.450 Sum_probs=20.5
Q ss_pred ccccccCCCCC-cchhHHHHHHhcC
Q 047369 111 VKNNIYGMGFD-QSFGPWFIARWLK 134 (225)
Q Consensus 111 Iknn~~GmGFd-hSFgLwflAR~Lk 134 (225)
+|..+-|.|+| |.|||+.+|+...
T Consensus 494 ~~~a~~G~G~DRHL~gL~~~a~~~g 518 (612)
T 1xl7_A 494 MKDCSHGKGFDRHLLGLLLIAKEEG 518 (612)
T ss_dssp HHHHHTTCCSHHHHHHHHHHHHHTT
T ss_pred HHHHHhccchHHHHHHHHHHHHHcC
Confidence 56778999999 9999999998543
No 16
>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A
Probab=23.10 E-value=2.9e+02 Score=22.00 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=16.1
Q ss_pred HHHHHHH-HHHcCceEEEeecCCCCCC
Q 047369 184 ELKRLKQ-ALKVGFRHLVFEDNYDTGT 209 (225)
Q Consensus 184 qlkRv~q-A~~aGf~hLIFeDnydtgt 209 (225)
.+++|.+ |.+.|+ +|.+|++.+|.
T Consensus 205 ~l~~l~~l~~~~~~--~li~De~~~~~ 229 (406)
T 4adb_A 205 FLQGLRELCNRHNA--LLIFDEVQTGV 229 (406)
T ss_dssp HHHHHHHHHHHTTC--EEEEECTTTTT
T ss_pred HHHHHHHHHHHcCC--EEEEeccccCC
Confidence 4777766 455564 77778887765
No 17
>2i6x_A Hydrolase, haloacid dehalogenase-like family; HAD superfamily, struct genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Porphyromonas gingivalis}
Probab=22.99 E-value=88 Score=22.29 Aligned_cols=39 Identities=15% Similarity=0.347 Sum_probs=27.8
Q ss_pred hhhhccCCcccceEEEEeccchhHHHHHHHHHHcCceEEEeecC
Q 047369 161 PVMKRHGITNLSRVLIFFYDHQNELKRLKQALKVGFRHLVFEDN 204 (225)
Q Consensus 161 ~vl~~~g~~D~srvLiFFDDHqnqlkRv~qA~~aGf~hLIFeDn 204 (225)
.+++..| ++.+++ ++|+|..+- +..|.++|++.+.+...
T Consensus 158 ~~~~~~~-~~~~~~-~~igD~~~D---i~~a~~aG~~~~~~~~~ 196 (211)
T 2i6x_A 158 EMIADSG-MKPEET-LFIDDGPAN---VATAERLGFHTYCPDNG 196 (211)
T ss_dssp HHHHHHC-CCGGGE-EEECSCHHH---HHHHHHTTCEEECCCTT
T ss_pred HHHHHhC-CChHHe-EEeCCCHHH---HHHHHHcCCEEEEECCH
Confidence 3445554 455554 679999985 88999999998877543
No 18
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=22.94 E-value=1.2e+02 Score=25.99 Aligned_cols=32 Identities=22% Similarity=0.365 Sum_probs=25.9
Q ss_pred ceEEEEeccchh----HHHHHHHHH-HcCceEEEeec
Q 047369 172 SRVLIFFYDHQN----ELKRLKQAL-KVGFRHLVFED 203 (225)
Q Consensus 172 srvLiFFDDHqn----qlkRv~qA~-~aGf~hLIFeD 203 (225)
+|+|+.-|...- -+++|++++ ++|++..+|++
T Consensus 41 ~~~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~~~~ 77 (371)
T 1o2d_A 41 KRALVVTGKSSSKKNGSLDDLKKLLDETEISYEIFDE 77 (371)
T ss_dssp SEEEEEEESSGGGTSSHHHHHHHHHHHTTCEEEEEEE
T ss_pred CEEEEEECchHHhhccHHHHHHHHHHHcCCeEEEeCC
Confidence 699999999543 379999888 47999999975
No 19
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=22.83 E-value=1.4e+02 Score=18.57 Aligned_cols=25 Identities=12% Similarity=0.329 Sum_probs=12.6
Q ss_pred EEeccchhHHHHHHHHHH-cCceEEE
Q 047369 176 IFFYDHQNELKRLKQALK-VGFRHLV 200 (225)
Q Consensus 176 iFFDDHqnqlkRv~qA~~-aGf~hLI 200 (225)
++.||+......+++..+ .|++...
T Consensus 5 liv~~~~~~~~~l~~~l~~~g~~v~~ 30 (119)
T 2j48_A 5 LLLEEEDEAATVVCEMLTAAGFKVIW 30 (119)
T ss_dssp EEECCCHHHHHHHHHHHHHTTCEEEE
T ss_pred EEEeCCHHHHHHHHHHHHhCCcEEEE
Confidence 345666555555555544 3554433
No 20
>1dtd_B Metallocarboxypeptidase inhibitor; carboxypeptidase A2, leech carboxypeptidase inhibitor, hydrolase/hydrolase inhibitor complex; HET: GLU; 1.65A {Hirudo medicinalis} SCOP: g.30.1.1 PDB: 1dtv_A 1zfi_A 1zfl_A 2abz_C
Probab=22.63 E-value=18 Score=25.85 Aligned_cols=13 Identities=46% Similarity=1.153 Sum_probs=10.2
Q ss_pred Ccchhhccccccccc
Q 047369 77 DVPWYRKMEKRVEWT 91 (225)
Q Consensus 77 gvpwcrk~~~~veWt 91 (225)
..||||.-. |||.
T Consensus 34 tapwcrega--vewv 46 (61)
T 1dtd_B 34 TAPWCREGA--VEWV 46 (61)
T ss_dssp CCHHHHHHC--CCCE
T ss_pred CCcchhcCc--eEEE
Confidence 469999755 9995
No 21
>3i28_A Epoxide hydrolase 2; aromatic hydrocarbons catabolism, detoxification, magnesium, metal-binding, peroxisome; HET: 34N; 1.95A {Homo sapiens} PDB: 1s8o_A* 1zd2_P* 1vj5_A* 1zd4_A* 1zd5_A* 3i1y_A* 1zd3_A* 3koo_A* 3otq_A* 4hai_A* 1cqz_A 1cr6_A* 1ek1_A* 1ek2_A* 3ans_A* 3ant_A* 3pdc_A*
Probab=22.59 E-value=76 Score=25.58 Aligned_cols=39 Identities=21% Similarity=0.290 Sum_probs=29.9
Q ss_pred hhhhccCCcccceEEEEeccchhHHHHHHHHHHcCceEEEeecC
Q 047369 161 PVMKRHGITNLSRVLIFFYDHQNELKRLKQALKVGFRHLVFEDN 204 (225)
Q Consensus 161 ~vl~~~g~~D~srvLiFFDDHqnqlkRv~qA~~aGf~hLIFeDn 204 (225)
..++..| +++++++++ +|+.+ =|+.|.++|.+.+.+.+.
T Consensus 168 ~~~~~lg-~~p~~~~~v-~D~~~---di~~a~~aG~~~~~~~~~ 206 (555)
T 3i28_A 168 FLLDTLK-ASPSEVVFL-DDIGA---NLKPARDLGMVTILVQDT 206 (555)
T ss_dssp HHHHHHT-CCGGGEEEE-ESCHH---HHHHHHHHTCEEEECSSH
T ss_pred HHHHHcC-CChhHEEEE-CCcHH---HHHHHHHcCCEEEEECCC
Confidence 4455554 477887766 99976 489999999999998753
No 22
>3kzp_A LMO0111 protein, putative diguanylate cyclase/phosphodiesterase; EAL-domain, structural genomics, PSI-2; 2.00A {Listeria monocytogenes}
Probab=22.41 E-value=97 Score=23.59 Aligned_cols=33 Identities=15% Similarity=0.272 Sum_probs=25.1
Q ss_pred HHHHHHHHHHcCceEEEeecCCCCCCCcchhhhhh
Q 047369 184 ELKRLKQALKVGFRHLVFEDNYDTGTGDHYSLRQL 218 (225)
Q Consensus 184 qlkRv~qA~~aGf~hLIFeDnydtgtgdhyslrqi 218 (225)
-...+++-++.|++-.| ||+.||...--.|+++
T Consensus 130 ~~~~l~~Lr~~G~~ial--DDfG~g~ssl~~L~~l 162 (235)
T 3kzp_A 130 ILNKIKVIHGLGYHIAI--DDVSCGLNSLERVMSY 162 (235)
T ss_dssp HHHHHHHHHHTTCEEEE--CSTTSTTCCHHHHHHH
T ss_pred HHHHHHHHHHCCCEEEE--EeCCCCchhHHHHHhc
Confidence 34567778889999988 8999988766555554
No 23
>1v9j_A BOLA-like protein riken cDNA 1110025L05; stationary phase morphogene, stress-induced morphogene, structural genomics; NMR {Mus musculus} SCOP: d.52.6.1
Probab=22.14 E-value=27 Score=27.05 Aligned_cols=25 Identities=12% Similarity=0.198 Sum_probs=20.2
Q ss_pred eEEEeecCCCCCCCcchhhhhhhcc
Q 047369 197 RHLVFEDNYDTGTGDHYSLRQLCDQ 221 (225)
Q Consensus 197 ~hLIFeDnydtgtgdhyslrqicdq 221 (225)
++|--+|+...|.|.||.+.=+.++
T Consensus 46 ~~l~V~DeS~~G~gsHF~v~IVS~~ 70 (113)
T 1v9j_A 46 EHVEVEDTTLNRCATSFRVLVVSAK 70 (113)
T ss_dssp SEEEEEECCSSSSCCCEEEEEECSH
T ss_pred cEEEEEeccCCCCCceEEEEEEchh
Confidence 7898899887788999988766554
No 24
>3m8l_A Capsid protein; FCV-5 capsid, icosahedral virus; 3.40A {Feline calicivirus} PDB: 3m8l_B
Probab=21.87 E-value=14 Score=35.65 Aligned_cols=24 Identities=17% Similarity=0.254 Sum_probs=20.3
Q ss_pred chhhhccCCcccceEEEEeccchh
Q 047369 160 GPVMKRHGITNLSRVLIFFYDHQN 183 (225)
Q Consensus 160 ~~vl~~~g~~D~srvLiFFDDHqn 183 (225)
++-+++...+|..|++||+|+|++
T Consensus 366 ~n~~~psn~I~~~ki~vfqd~hv~ 389 (534)
T 3m8l_A 366 ENKLIPSNTIDQTKIAIFQDNHVN 389 (534)
T ss_dssp TTBCCCCSBCCSTTCCCCCCCCCS
T ss_pred CCcccccceeccceEEEEecCCCC
Confidence 455778888999999999999964
No 25
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=21.48 E-value=1.9e+02 Score=19.47 Aligned_cols=46 Identities=13% Similarity=0.104 Sum_probs=30.5
Q ss_pred cccchhhhccCCcccceEEEEeccchhHHHHHHHHH-HcCceEEEee
Q 047369 157 IDWGPVMKRHGITNLSRVLIFFYDHQNELKRLKQAL-KVGFRHLVFE 202 (225)
Q Consensus 157 vDW~~vl~~~g~~D~srvLiFFDDHqnqlkRv~qA~-~aGf~hLIFe 202 (225)
+.++++-.....+++.+-++++...-....+..+.+ +.|++..+.+
T Consensus 41 ip~~~l~~~~~~l~~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~ 87 (100)
T 3foj_A 41 IPMNSIPDNLNYFNDNETYYIICKAGGRSAQVVQYLEQNGVNAVNVE 87 (100)
T ss_dssp CCGGGGGGCGGGSCTTSEEEEECSSSHHHHHHHHHHHTTTCEEEEET
T ss_pred CCHHHHHHHHHhCCCCCcEEEEcCCCchHHHHHHHHHHCCCCEEEec
Confidence 344444444555678888999998887777776665 4688554443
No 26
>4gel_A Mitochondrial cardiolipin hydrolase; piRNA, phospholipase D, nuclease; 1.76A {Drosophila melanogaster} PDB: 4gem_A 4gen_A
Probab=21.40 E-value=1.2e+02 Score=23.20 Aligned_cols=32 Identities=16% Similarity=0.179 Sum_probs=23.2
Q ss_pred hhHHHHHHHHHHcCceE-EEeecCCCCCCCcch
Q 047369 182 QNELKRLKQALKVGFRH-LVFEDNYDTGTGDHY 213 (225)
Q Consensus 182 qnqlkRv~qA~~aGf~h-LIFeDnydtgtgdhy 213 (225)
..=++.|.+|.++|+++ +|.|+....+.+..+
T Consensus 84 ~~I~~aL~~Aa~RGV~VRii~D~~~~~~~~~~~ 116 (220)
T 4gel_A 84 LFLADSIKRALQRGVIIRIISDGEMVYSKGSQI 116 (220)
T ss_dssp HHHHHHHHHHHHHTCEEEEECCTTTTTSTTCHH
T ss_pred HHHHHHHHHHHHcCCeEEEEEechhhhhhHHHH
Confidence 45577899999999984 667776666555544
No 27
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=21.38 E-value=1.3e+02 Score=19.17 Aligned_cols=29 Identities=21% Similarity=0.220 Sum_probs=17.0
Q ss_pred eEEEEeccchhHHHHHHHHHH-cCceEEEee
Q 047369 173 RVLIFFYDHQNELKRLKQALK-VGFRHLVFE 202 (225)
Q Consensus 173 rvLiFFDDHqnqlkRv~qA~~-aGf~hLIFe 202 (225)
+|| .-||+....+.+++.++ .|++...+.
T Consensus 7 ~il-ivdd~~~~~~~l~~~L~~~g~~v~~~~ 36 (127)
T 2gkg_A 7 KIL-IVESDTALSATLRSALEGRGFTVDETT 36 (127)
T ss_dssp EEE-EECSCHHHHHHHHHHHHHHTCEEEEEC
T ss_pred eEE-EEeCCHHHHHHHHHHHHhcCceEEEec
Confidence 444 45777766666666655 366654443
No 28
>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*
Probab=21.19 E-value=3e+02 Score=21.93 Aligned_cols=115 Identities=13% Similarity=0.154 Sum_probs=63.7
Q ss_pred hhhHHHHHHHhhhhcccccccccccCCCCCcchhHHHHHHhc-Cc---ceEEeccccccCC---------CCCC---ccc
Q 047369 92 TKDLIEVLEEFVPIYETRPVKNNIYGMGFDQSFGPWFIARWL-KL---DLMIESGAFKDIQ---------PGFC---GFG 155 (225)
Q Consensus 92 ~~dLL~~L~eFvpiY~trPIknn~~GmGFdhSFgLwflAR~L-kP---~i~IESG~fkGhS---------Pdf~---Dfg 155 (225)
..+|.+.+.++.. ..| .+=..++|-. -++..+++.+ +| .++++...|-+.. +..+ +-.
T Consensus 60 ~~~lr~~la~~~~---~~~-~~v~~~~G~~--~ai~~~~~~~~~~g~d~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~ 133 (356)
T 1fg7_A 60 PKAVIENYAQYAG---VKP-EQVLVSRGAD--EGIELLIRAFCEPGKDAILYCPPTYGMYSVSAETIGVECRTVPTLDNW 133 (356)
T ss_dssp CHHHHHHHHHHHT---SCG-GGEEEESHHH--HHHHHHHHHHCCTTTCEEEECSSSCTHHHHHHHHHTCEEEECCCCTTS
T ss_pred HHHHHHHHHHHhC---CCh-HHEEEcCCHH--HHHHHHHHHHhCCCCCEEEEeCCChHHHHHHHHHcCCEEEEeeCCCCC
Confidence 4567777777763 222 3445666643 3455566655 45 4899988887654 1111 111
Q ss_pred ccccchhhhccCCcccceEEEEeccchh---------HHHHHHHHHHcCceEEEeecCCCCCCCcchhhhhh
Q 047369 156 SIDWGPVMKRHGITNLSRVLIFFYDHQN---------ELKRLKQALKVGFRHLVFEDNYDTGTGDHYSLRQL 218 (225)
Q Consensus 156 svDW~~vl~~~g~~D~srvLiFFDDHqn---------qlkRv~qA~~aGf~hLIFeDnydtgtgdhyslrqi 218 (225)
.+|.+.+.+... ..| +++.--.+| ++++|.+..+.| .+|..|++-++.++..|+..+
T Consensus 134 ~~d~~~l~~~i~---~~~-~v~l~~p~nptG~~~~~~~l~~l~~~~~~~--~~li~De~~~~~~~~~~~~~~ 199 (356)
T 1fg7_A 134 QLDLQGISDKLD---GVK-VVYVCSPNNPTGQLINPQDFRTLLELTRGK--AIVVADEAYIEFCPQASLAGW 199 (356)
T ss_dssp CCCHHHHHTSCT---TEE-EEEEESSCTTTCCCCCHHHHHHHHHHHTTT--CEEEEECTTGGGSGGGCSGGG
T ss_pred CCCHHHHHHHhc---CCC-EEEEeCCCCCCCCCCCHHHHHHHHHhCCCC--CEEEEEccchhhcCCCcHHHH
Confidence 355555433322 234 344444433 677776654434 477788888776655555444
No 29
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=20.69 E-value=1.2e+02 Score=20.36 Aligned_cols=29 Identities=10% Similarity=0.162 Sum_probs=21.7
Q ss_pred EEEeccchhHHHHHHHHHHc-CceEEEeec
Q 047369 175 LIFFYDHQNELKRLKQALKV-GFRHLVFED 203 (225)
Q Consensus 175 LiFFDDHqnqlkRv~qA~~a-Gf~hLIFeD 203 (225)
++.-||+....+.+++.++. |++...++|
T Consensus 9 ilivdd~~~~~~~l~~~L~~~g~~v~~~~~ 38 (136)
T 3kto_A 9 IYLVDHQKDARAALSKLLSPLDVTIQCFAS 38 (136)
T ss_dssp EEEECSCHHHHHHHHHHHTTSSSEEEEESS
T ss_pred EEEEcCCHHHHHHHHHHHHHCCcEEEEeCC
Confidence 44569999888888888765 887776654
No 30
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=20.26 E-value=1.4e+02 Score=19.99 Aligned_cols=30 Identities=17% Similarity=0.227 Sum_probs=22.3
Q ss_pred eEEEEeccchhHHHHHHHHHHc--CceEEEeec
Q 047369 173 RVLIFFYDHQNELKRLKQALKV--GFRHLVFED 203 (225)
Q Consensus 173 rvLiFFDDHqnqlkRv~qA~~a--Gf~hLIFeD 203 (225)
+|| +-||+......+++.++. |++...++|
T Consensus 6 ~il-ivdd~~~~~~~l~~~L~~~~~~~v~~~~~ 37 (140)
T 3lua_A 6 TVL-LIDYFEYEREKTKIIFDNIGEYDFIEVEN 37 (140)
T ss_dssp EEE-EECSCHHHHHHHHHHHHHHCCCEEEEECS
T ss_pred eEE-EEeCCHHHHHHHHHHHHhccCccEEEECC
Confidence 444 558888888888888775 888776654
Done!