BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047371
(222 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A4SJL7|PRMA_AERS4 Ribosomal protein L11 methyltransferase OS=Aeromonas salmonicida
(strain A449) GN=prmA PE=3 SV=1
Length = 292
Score = 161 bits (408), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 86/218 (39%), Positives = 125/218 (57%), Gaps = 26/218 (11%)
Query: 1 ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
+ FHP++ + LWI P W P+ A N++L+PGLAFGTG H TT LCL L L G+
Sbjct: 99 DHFHPMQFGERLWICPSWRDVPNPDAVNVMLDPGLAFGTGTHPTTALCLQWLDGLDLAGK 158
Query: 61 LFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRT 120
+D+G GSGILGIAA+K GAA +G+DIDPQ I+++H NA N + +I+L+L D+
Sbjct: 159 TVVDFGCGSGILGIAALKLGAARVIGIDIDPQAIQASHDNAERNGVA-GQIELYLPADQ- 216
Query: 121 FTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVG 180
+ E DVV+ANIL PL +LA I + KPG+++
Sbjct: 217 ------------------------PQDVEADVVVANILAGPLRELAPLIAGHGKPGSLMA 252
Query: 181 ISGILSEQLPRIINRYSEFLEDILVSEKDDWRCVSGTK 218
+SG+L Q P + Y ++ + + K++W +SG K
Sbjct: 253 LSGVLESQAPELETIYGQWFDMDPTAVKEEWCRLSGRK 290
>sp|Q3IIC0|PRMA_PSEHT Ribosomal protein L11 methyltransferase OS=Pseudoalteromonas
haloplanktis (strain TAC 125) GN=prmA PE=3 SV=1
Length = 293
Score = 160 bits (406), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 89/219 (40%), Positives = 128/219 (58%), Gaps = 29/219 (13%)
Query: 1 ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
++FHP++ K LWI P W PD A N++L+PGLAFGTG HATT LCL L+S G+
Sbjct: 101 DNFHPIQFGKRLWICPSWRDIPDPDAVNVLLDPGLAFGTGTHATTALCLKWLESQDLTGK 160
Query: 61 LFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDR- 119
+D+G GSGILGIAAIK GA +G+DIDPQ ++++ NA N + K++++L ++
Sbjct: 161 TVVDFGCGSGILGIAAIKLGAERMIGIDIDPQALEASLDNANRNGVA-DKLEVYLPENQP 219
Query: 120 TFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVV 179
F+A D+V+ANIL PL +L I+ KPG +
Sbjct: 220 EFSA---------------------------DIVVANILAQPLRELHSVILGLLKPGGKI 252
Query: 180 GISGILSEQLPRIINRYSEFLEDILVSEKDDWRCVSGTK 218
+SGIL+EQ + + Y+ F+E ++ + DW VSGTK
Sbjct: 253 AMSGILTEQAQSVADVYAPFIELDDIAIEGDWTRVSGTK 291
>sp|A0KNJ1|PRMA_AERHH Ribosomal protein L11 methyltransferase OS=Aeromonas hydrophila
subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=prmA
PE=3 SV=1
Length = 292
Score = 157 bits (398), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 85/219 (38%), Positives = 123/219 (56%), Gaps = 26/219 (11%)
Query: 1 ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
+ FHP++ + LWI P W P+ A N++L+PGLAFGTG H TT LCL L L G+
Sbjct: 99 DHFHPMQFGERLWICPSWRDVPNPDAVNVMLDPGLAFGTGTHPTTALCLQWLDGLDLAGK 158
Query: 61 LFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRT 120
+D+G GSGILGIAA+K GAA +G+DIDPQ I+++ NA N + +I+L+L D+
Sbjct: 159 TVVDFGCGSGILGIAALKLGAARVIGIDIDPQAIQASRDNAERNGVA-DQIELYLPADQ- 216
Query: 121 FTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVG 180
+ E DVV+ANIL PL +LA I + K G+++
Sbjct: 217 ------------------------PQDVEADVVVANILAGPLRELAPLIAGHGKAGSLMA 252
Query: 181 ISGILSEQLPRIINRYSEFLEDILVSEKDDWRCVSGTKF 219
+SG+L Q P + Y ++ E + K++W +SG K
Sbjct: 253 LSGVLESQAPELETIYGQWFEMDPTAVKEEWCRLSGRKL 291
>sp|Q7VPN5|PRMA_HAEDU Ribosomal protein L11 methyltransferase OS=Haemophilus ducreyi
(strain 35000HP / ATCC 700724) GN=prmA PE=3 SV=1
Length = 293
Score = 157 bits (397), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 84/218 (38%), Positives = 123/218 (56%), Gaps = 26/218 (11%)
Query: 1 ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
++FHP++ + LWI P W PD +A NI+L+PGLAFGTG H TT LCL L L G+
Sbjct: 101 DNFHPMQFGQRLWICPSWREVPDEKAVNIMLDPGLAFGTGTHPTTALCLQWLDGLDLTGK 160
Query: 61 LFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRT 120
+D+G GSGIL I+A+K GA +G+DIDPQ I ++ NAA N + +++L L D+
Sbjct: 161 TVIDFGCGSGILAISALKLGAKQAIGIDIDPQAILASQNNAAANGVA-DRLQLFLAKDQ- 218
Query: 121 FTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVG 180
+ + DVV+ANIL PL +LA +I++ KP +G
Sbjct: 219 ------------------------PQALQADVVVANILAGPLKELAPNIMTLVKPQGYLG 254
Query: 181 ISGILSEQLPRIINRYSEFLEDILVSEKDDWRCVSGTK 218
+SGIL+ Q + Y+ + V EK++W ++G K
Sbjct: 255 LSGILATQAQSVCQAYAAVFKLDPVVEKEEWCRITGIK 292
>sp|A5F3S3|PRMA_VIBC3 Ribosomal protein L11 methyltransferase OS=Vibrio cholerae serotype
O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=prmA PE=3
SV=1
Length = 295
Score = 156 bits (395), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 89/219 (40%), Positives = 125/219 (57%), Gaps = 26/219 (11%)
Query: 1 ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
++FHP++ + LWI P W PD QA N++L+PGLAFGTG H TT LCL L +L G+
Sbjct: 102 DNFHPMQFGRRLWICPSWREVPDPQAVNVMLDPGLAFGTGTHPTTALCLEWLDNLDLTGK 161
Query: 61 LFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRT 120
+D+G GSGIL IAAIK GAA +G+DIDPQ + ++ NAA N + +I+++L D+
Sbjct: 162 TVIDFGCGSGILAIAAIKLGAAKVIGIDIDPQALLASKDNAARNGV-EDQIEVYLPKDQP 220
Query: 121 FTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVG 180
+G+V DVV+ANIL PL +L+ I KPG +
Sbjct: 221 ---------EGLV----------------ADVVVANILAGPLRELSPTIKGLLKPGGQLA 255
Query: 181 ISGILSEQLPRIINRYSEFLEDILVSEKDDWRCVSGTKF 219
+SGIL Q + Y + LE ++EK +W +SG K
Sbjct: 256 MSGILDTQAESVAEFYRDDLELDPIAEKSEWCRISGRKL 294
>sp|Q9KV64|PRMA_VIBCH Ribosomal protein L11 methyltransferase OS=Vibrio cholerae serotype
O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=prmA
PE=3 SV=1
Length = 295
Score = 156 bits (395), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 89/219 (40%), Positives = 125/219 (57%), Gaps = 26/219 (11%)
Query: 1 ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
++FHP++ + LWI P W PD QA N++L+PGLAFGTG H TT LCL L +L G+
Sbjct: 102 DNFHPMQFGRRLWICPSWREVPDPQAVNVMLDPGLAFGTGTHPTTALCLEWLDNLDLSGK 161
Query: 61 LFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRT 120
+D+G GSGIL IAAIK GAA +G+DIDPQ + ++ NAA N + +I+++L D+
Sbjct: 162 TVIDFGCGSGILAIAAIKLGAAKVIGIDIDPQALLASKDNAARNGV-EDQIEVYLPKDQP 220
Query: 121 FTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVG 180
+G+V DVV+ANIL PL +L+ I KPG +
Sbjct: 221 ---------EGLV----------------ADVVVANILAGPLRELSPIIKGLLKPGGQLA 255
Query: 181 ISGILSEQLPRIINRYSEFLEDILVSEKDDWRCVSGTKF 219
+SGIL Q + Y + LE ++EK +W +SG K
Sbjct: 256 MSGILDTQAESVAEFYRDDLELDPIAEKSEWCRISGRKL 294
>sp|C3LQP9|PRMA_VIBCM Ribosomal protein L11 methyltransferase OS=Vibrio cholerae serotype
O1 (strain M66-2) GN=prmA PE=3 SV=1
Length = 295
Score = 155 bits (393), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 89/219 (40%), Positives = 125/219 (57%), Gaps = 26/219 (11%)
Query: 1 ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
++FHP++ + LWI P W PD QA N++L+PGLAFGTG H TT LCL L +L G+
Sbjct: 102 DNFHPMQFGRRLWICPSWREVPDPQAVNVMLDPGLAFGTGTHPTTALCLEWLDNLDLTGK 161
Query: 61 LFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRT 120
+D+G GSGIL IAAIK GAA +G+DIDPQ + ++ NAA N + +I+++L D+
Sbjct: 162 TVIDFGCGSGILAIAAIKLGAAKVIGIDIDPQALLASKDNAARNGV-EDQIEVYLPKDQP 220
Query: 121 FTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVG 180
+G+V DVV+ANIL PL +L+ I KPG +
Sbjct: 221 ---------EGLV----------------ADVVVANILAGPLRELSPIIKGLLKPGGQLA 255
Query: 181 ISGILSEQLPRIINRYSEFLEDILVSEKDDWRCVSGTKF 219
+SGIL Q + Y + LE ++EK +W +SG K
Sbjct: 256 MSGILDTQAESVAEFYRDDLELDPIAEKSEWCRISGRKL 294
>sp|B0BRD1|PRMA_ACTPJ Ribosomal protein L11 methyltransferase OS=Actinobacillus
pleuropneumoniae serotype 3 (strain JL03) GN=prmA PE=3
SV=1
Length = 293
Score = 155 bits (393), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 85/218 (38%), Positives = 121/218 (55%), Gaps = 26/218 (11%)
Query: 1 ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
++FHP++ K LWI P W PD A N++L+PGLAFGTG H TT LCL L SL G+
Sbjct: 101 DNFHPMQFGKRLWICPSWREVPDSNAVNVMLDPGLAFGTGTHPTTALCLQWLDSLDLTGK 160
Query: 61 LFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRT 120
+D+G GSGIL IAA+K GA +G+DIDPQ I ++ NA N + +++L L D+
Sbjct: 161 TVIDFGCGSGILAIAALKLGAKQAIGIDIDPQAILASGNNAEANGVA-DRLQLFLAKDQ- 218
Query: 121 FTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVG 180
+ + DVV+ANIL PL +LA +I++ KP +G
Sbjct: 219 ------------------------PQDLQADVVVANILAGPLKELAPNIITLVKPQGDLG 254
Query: 181 ISGILSEQLPRIINRYSEFLEDILVSEKDDWRCVSGTK 218
+SGIL+ Q + Y+ V EK++W ++G K
Sbjct: 255 LSGILATQAESVCEAYAPDFNLDSVVEKEEWCRITGVK 292
>sp|B6ENA3|PRMA_ALISL Ribosomal protein L11 methyltransferase OS=Aliivibrio salmonicida
(strain LFI1238) GN=prmA PE=3 SV=1
Length = 294
Score = 155 bits (392), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 86/218 (39%), Positives = 121/218 (55%), Gaps = 26/218 (11%)
Query: 1 ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
++FHP++ + LWI P W P+ A N++L+PGLAFGTG HATT LCL L+S+ G+
Sbjct: 102 DNFHPMKFGERLWICPSWREIPEPDAINVMLDPGLAFGTGTHATTALCLEWLESIDLTGK 161
Query: 61 LFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRT 120
+D+G GSGIL IAAIK GAA VG+DIDPQ I ++ NA N
Sbjct: 162 TVIDFGCGSGILAIAAIKLGAAKVVGIDIDPQAITASKDNATRN---------------- 205
Query: 121 FTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVG 180
GV E L+ + E DVV+ANIL PL +L+ I ++ KPG +
Sbjct: 206 ----------GVAEQLTLFLPQDQPENLVADVVVANILAAPLRELSSIITAHVKPGGALA 255
Query: 181 ISGILSEQLPRIINRYSEFLEDILVSEKDDWRCVSGTK 218
+SG+L Q + + YS+ ++E+ +W +SG K
Sbjct: 256 MSGVLDTQANNVASYYSDNFTLDAIAEQQEWCRISGIK 293
>sp|B3GYL9|PRMA_ACTP7 Ribosomal protein L11 methyltransferase OS=Actinobacillus
pleuropneumoniae serotype 7 (strain AP76) GN=prmA PE=3
SV=1
Length = 293
Score = 154 bits (390), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 85/218 (38%), Positives = 121/218 (55%), Gaps = 26/218 (11%)
Query: 1 ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
++FHP++ K LWI P W PD A N++L+PGLAFGTG H TT LCL L SL G+
Sbjct: 101 DNFHPMQFGKRLWICPSWREVPDPNAVNVMLDPGLAFGTGTHPTTALCLQWLDSLDLTGK 160
Query: 61 LFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRT 120
+D+G GSGIL IAA+K GA +G+DIDPQ I ++ NA N + +++L L D+
Sbjct: 161 TVIDFGCGSGILAIAALKLGAKQAIGIDIDPQAILASGNNAEANGVA-DRLQLFLAKDQ- 218
Query: 121 FTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVG 180
+ + DVV+ANIL PL +LA +I++ KP +G
Sbjct: 219 ------------------------PQDLQADVVVANILAGPLKELAPNIITLVKPQGDLG 254
Query: 181 ISGILSEQLPRIINRYSEFLEDILVSEKDDWRCVSGTK 218
+SGIL+ Q + Y+ V EK++W ++G K
Sbjct: 255 LSGILATQAESVCEAYAPDFNLDPVVEKEEWCRITGVK 292
>sp|A3N2I5|PRMA_ACTP2 Ribosomal protein L11 methyltransferase OS=Actinobacillus
pleuropneumoniae serotype 5b (strain L20) GN=prmA PE=3
SV=1
Length = 293
Score = 154 bits (390), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 85/218 (38%), Positives = 121/218 (55%), Gaps = 26/218 (11%)
Query: 1 ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
++FHP++ K LWI P W PD A N++L+PGLAFGTG H TT LCL L SL G+
Sbjct: 101 DNFHPMQFGKRLWICPSWREVPDPNAVNVMLDPGLAFGTGTHPTTALCLQWLDSLDLTGK 160
Query: 61 LFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRT 120
+D+G GSGIL IAA+K GA +G+DIDPQ I ++ NA N + +++L L D+
Sbjct: 161 TVIDFGCGSGILAIAALKLGAKQAIGIDIDPQAILASGNNAEANGVA-DRLQLFLAKDQ- 218
Query: 121 FTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVG 180
+ + DVV+ANIL PL +LA +I++ KP +G
Sbjct: 219 ------------------------PQDLQADVVVANILAGPLKELAPNIITLVKPQGDLG 254
Query: 181 ISGILSEQLPRIINRYSEFLEDILVSEKDDWRCVSGTK 218
+SGIL+ Q + Y+ V EK++W ++G K
Sbjct: 255 LSGILATQAESVCEAYAPDFNLDPVVEKEEWCRITGVK 292
>sp|Q2NWP9|PRMA_SODGM Ribosomal protein L11 methyltransferase OS=Sodalis glossinidius
(strain morsitans) GN=prmA PE=3 SV=1
Length = 293
Score = 153 bits (387), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 86/218 (39%), Positives = 119/218 (54%), Gaps = 26/218 (11%)
Query: 1 ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
++FHP+ + LWI P W PD QA N++L+PGLAFGTG H TT LCL L L G+
Sbjct: 101 DNFHPMRFGERLWICPSWRPVPDPQAVNVMLDPGLAFGTGTHPTTALCLQWLDGLDLRGK 160
Query: 61 LFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRT 120
+D+G GSGIL IAA+K GAA VG+DIDPQ I ++ NA N
Sbjct: 161 TVIDFGCGSGILAIAALKLGAAHAVGIDIDPQAILASRDNAQRN---------------- 204
Query: 121 FTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVG 180
GV E L+ + + + +VV+ANIL PL +LA I+ PG +G
Sbjct: 205 ----------GVAELLTLYLPQQQPQDLHANVVVANILAGPLRELAPLIIDLPLPGGYLG 254
Query: 181 ISGILSEQLPRIINRYSEFLEDILVSEKDDWRCVSGTK 218
+SGIL+ Q + Y+ V+EK++W ++GT+
Sbjct: 255 LSGILASQAESVAQAYAAAFSLDPVAEKEEWCRITGTR 292
>sp|Q6DAJ5|PRMA_ERWCT Ribosomal protein L11 methyltransferase OS=Erwinia carotovora
subsp. atroseptica (strain SCRI 1043 / ATCC BAA-672)
GN=prmA PE=3 SV=1
Length = 295
Score = 153 bits (386), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 84/220 (38%), Positives = 123/220 (55%), Gaps = 26/220 (11%)
Query: 1 ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
++FHP++ K LWI P W PD A N++L+PGLAFGTG H TT LCL L L G+
Sbjct: 101 DNFHPMQFGKRLWICPSWREIPDPSAVNVMLDPGLAFGTGTHPTTSLCLQWLDGLDLEGK 160
Query: 61 LFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRT 120
+D+G GSGIL IAA+K GAA +G+DIDPQ I+++ NA N + ++++L+L D+
Sbjct: 161 TIIDFGCGSGILAIAALKLGAARAIGIDIDPQAIQASRDNAQRNGVS-ERLELYLPKDQP 219
Query: 121 FTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVG 180
S DVV+ANIL PL +LA I K G +G
Sbjct: 220 ADLSA-------------------------DVVVANILAGPLRELAPLISDLPKAGGHLG 254
Query: 181 ISGILSEQLPRIINRYSEFLEDILVSEKDDWRCVSGTKFS 220
+SG+LS Q + Y++ V+E+++W ++G + +
Sbjct: 255 LSGVLSTQADGVAEAYADKFTLDPVAEREEWCRITGQRHT 294
>sp|B8F6T6|PRMA_HAEPS Ribosomal protein L11 methyltransferase OS=Haemophilus parasuis
serovar 5 (strain SH0165) GN=prmA PE=3 SV=1
Length = 294
Score = 152 bits (385), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 84/218 (38%), Positives = 119/218 (54%), Gaps = 26/218 (11%)
Query: 1 ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
++FHP++ K LWI P W PD A N++L+PGLAFGTG H TT LCL L SL +
Sbjct: 101 DNFHPMQFGKRLWICPSWREIPDPNAVNVMLDPGLAFGTGTHPTTALCLTWLDSLDLTDK 160
Query: 61 LFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRT 120
+D+G GSGIL IAA+K GA +G+DIDPQ I ++ NA +N + +++L L D+
Sbjct: 161 TVIDFGCGSGILAIAALKLGAKKAIGIDIDPQAILASQNNAEVNGVA-DRLQLFLTKDQ- 218
Query: 121 FTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVG 180
+ DVVIANIL PL +LA I++ KP +G
Sbjct: 219 ------------------------PQNLIADVVIANILAGPLKELAPQIITLVKPQGNLG 254
Query: 181 ISGILSEQLPRIINRYSEFLEDILVSEKDDWRCVSGTK 218
+SGIL+ Q + Y + + EK++W ++G K
Sbjct: 255 LSGILATQAESVCKAYQNSFKLDSIIEKEEWCRITGIK 292
>sp|Q15ZR4|PRMA_PSEA6 Ribosomal protein L11 methyltransferase OS=Pseudoalteromonas
atlantica (strain T6c / ATCC BAA-1087) GN=prmA PE=3 SV=1
Length = 292
Score = 152 bits (384), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 91/218 (41%), Positives = 120/218 (55%), Gaps = 27/218 (12%)
Query: 1 ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
++FHP+ + LWI P W PD A N++L+PGLAFGTG H TT LCL L +L +
Sbjct: 101 DNFHPMRFGQRLWICPSWRDVPDPSAVNVMLDPGLAFGTGTHPTTALCLRWLDALELSDK 160
Query: 61 LFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRT 120
L +D+G GSGILGIAAIK GA VG+DIDPQ + S+ NA N+IG KI+L
Sbjct: 161 LVVDFGCGSGILGIAAIKLGAKRVVGIDIDPQALLSSQTNADRNHIG-DKIEL------- 212
Query: 121 FTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVG 180
YL H+ + DVV+ANIL PL L + I +Y K G +
Sbjct: 213 --------------YLPEHQ-----PELKADVVLANILAGPLRDLREVITAYCKSGGKLV 253
Query: 181 ISGILSEQLPRIINRYSEFLEDILVSEKDDWRCVSGTK 218
+SGIL+EQ I + YS+ + +W VSG +
Sbjct: 254 LSGILAEQAQGINDLYSQDFHMEPIEIDGEWARVSGKR 291
>sp|Q81ZZ9|PRMA_NITEU Ribosomal protein L11 methyltransferase OS=Nitrosomonas europaea
(strain ATCC 19718 / NBRC 14298) GN=prmA PE=3 SV=1
Length = 313
Score = 152 bits (383), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 82/217 (37%), Positives = 120/217 (55%), Gaps = 17/217 (7%)
Query: 2 SFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGEL 61
F P+ ++ LW+VP W PPD A ++ L+PGLAFGTG H TT+LCL L ++ G+
Sbjct: 108 QFEPIRISSRLWVVPSWHEPPDPAAISLRLDPGLAFGTGSHPTTRLCLTWLDQFLQPGDS 167
Query: 62 FLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTF 121
LDYG GSGIL IAA+KFGA G+DIDP I ++ NA N P ++ F
Sbjct: 168 VLDYGCGSGILAIAALKFGADRVTGMDIDPNAITASLDNARNNFCDPDRL--------LF 219
Query: 122 TASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGI 181
T + V+ + R +E +V+ANIL NPL LA ++ +PG + +
Sbjct: 220 TTVLPPLVE---------DDRASAEWAPVTIVVANILANPLIMLAPVLMKALQPGGRIVL 270
Query: 182 SGILSEQLPRIINRYSEFLEDILVSEKDDWRCVSGTK 218
SGIL Q ++ YSE+ + + +++ W ++G K
Sbjct: 271 SGILETQADEVLQVYSEWFDMHIAAKEQGWVLLAGQK 307
>sp|B5FC65|PRMA_VIBFM Ribosomal protein L11 methyltransferase OS=Vibrio fischeri (strain
MJ11) GN=prmA PE=3 SV=1
Length = 294
Score = 151 bits (382), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 85/218 (38%), Positives = 123/218 (56%), Gaps = 26/218 (11%)
Query: 1 ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
++FHP++ K LWI P W P+ A N++L+PGLAFGTG H TT LCL L+ L G+
Sbjct: 102 DNFHPMQFGKRLWICPSWREIPEPDAVNVMLDPGLAFGTGTHPTTSLCLEWLEGLDLEGK 161
Query: 61 LFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRT 120
+D+G GSGIL IAAIK GAA +G+DIDPQ I ++ NA N + +I+L+L D+
Sbjct: 162 TVVDFGCGSGILAIAAIKLGAAKVIGIDIDPQAILASKDNATRNGVA-DQIELYLPQDQP 220
Query: 121 FTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVG 180
+G++ DVV+ANIL PL +L+ I S KP +
Sbjct: 221 ---------EGLI----------------ADVVVANILAGPLRELSGIITSLVKPQGQLA 255
Query: 181 ISGILSEQLPRIINRYSEFLEDILVSEKDDWRCVSGTK 218
+SG+L Q + + Y+E + + E+ +W +SG K
Sbjct: 256 MSGVLDTQAEDVASYYAEQFDLDAIVEQQEWCRISGKK 293
>sp|Q5E263|PRMA_VIBF1 Ribosomal protein L11 methyltransferase OS=Vibrio fischeri (strain
ATCC 700601 / ES114) GN=prmA PE=3 SV=1
Length = 294
Score = 151 bits (382), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 85/218 (38%), Positives = 123/218 (56%), Gaps = 26/218 (11%)
Query: 1 ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
++FHP++ K LWI P W P+ A N++L+PGLAFGTG H TT LCL L+ L G+
Sbjct: 102 DNFHPMQFGKRLWICPSWREIPEPDAVNVMLDPGLAFGTGTHPTTSLCLEWLEGLDLEGK 161
Query: 61 LFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRT 120
+D+G GSGIL IAAIK GAA +G+DIDPQ I ++ NA N + +I+L+L D+
Sbjct: 162 TVVDFGCGSGILAIAAIKLGAAKVIGIDIDPQAILASKDNATRNGVA-DQIELYLPQDQP 220
Query: 121 FTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVG 180
+G++ DVV+ANIL PL +L+ I S KP +
Sbjct: 221 ---------EGLI----------------ADVVVANILAGPLRELSGIITSLVKPQGQLA 255
Query: 181 ISGILSEQLPRIINRYSEFLEDILVSEKDDWRCVSGTK 218
+SG+L Q + + Y+E + + E+ +W +SG K
Sbjct: 256 MSGVLDTQAEDVASYYAEQFDLDAIVEQQEWCRISGKK 293
>sp|Q9JW08|PRMA_NEIMA Ribosomal protein L11 methyltransferase OS=Neisseria meningitidis
serogroup A / serotype 4A (strain Z2491) GN=prmA PE=3
SV=1
Length = 295
Score = 151 bits (382), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 83/217 (38%), Positives = 118/217 (54%), Gaps = 29/217 (13%)
Query: 2 SFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGEL 61
F P+ +++ LWI P W P+ A N+ L+PGLAFGTG H TT+LCL L + +K GE
Sbjct: 107 QFDPIRISERLWITPSWHEAPEDTAVNLRLDPGLAFGTGSHPTTRLCLKWLDTQLKNGES 166
Query: 62 FLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTF 121
LDYG GSGIL IAA+K GA VGVDID Q +++ NA NN+ + +PD
Sbjct: 167 VLDYGCGSGILTIAALKLGAGFAVGVDIDEQAVRAGKDNAEQNNVDAQ----FFLPD--- 219
Query: 122 TASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGI 181
G+ + ++DVV+ANIL NPL L + + + K G + +
Sbjct: 220 ---------------------GLPQG-QFDVVVANILANPLRMLGEMLAARTKQGGRIVL 257
Query: 182 SGILSEQLPRIINRYSEFLEDILVSEKDDWRCVSGTK 218
SG+L EQ + YS++ + ++ W +SGTK
Sbjct: 258 SGLLDEQAEELGGIYSQWFDLDPAETEEGWARLSGTK 294
>sp|C4LAF1|PRMA_TOLAT Ribosomal protein L11 methyltransferase OS=Tolumonas auensis
(strain DSM 9187 / TA4) GN=prmA PE=3 SV=1
Length = 292
Score = 151 bits (381), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 82/218 (37%), Positives = 120/218 (55%), Gaps = 26/218 (11%)
Query: 1 ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
E F P++ + LWI P W PD A N++L+PGLAFGTG H TT LCL L SL G+
Sbjct: 99 EHFQPMQFGERLWICPSWRDVPDPTAVNVLLDPGLAFGTGTHPTTALCLQWLDSLDLKGK 158
Query: 61 LFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRT 120
+D+G GSGIL IAA+K GA +G+DIDPQ I+++ NA N + +++L+L D+
Sbjct: 159 TLVDFGCGSGILAIAALKLGAERVIGIDIDPQAIEASRDNAQRNGVS-DQLELYLPEDQ- 216
Query: 121 FTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVG 180
+ + D+V+ANIL PL +L+ I KP ++
Sbjct: 217 ------------------------PKNFQADIVVANILAGPLRELSGLISGLVKPHGLMA 252
Query: 181 ISGILSEQLPRIINRYSEFLEDILVSEKDDWRCVSGTK 218
ISGIL Q P ++ YS++ +E+++W + G K
Sbjct: 253 ISGILESQAPELLEVYSQWFAMNPATEREEWCRLDGIK 290
>sp|C1DCV9|PRMA_LARHH Ribosomal protein L11 methyltransferase OS=Laribacter hongkongensis
(strain HLHK9) GN=prmA PE=3 SV=1
Length = 297
Score = 151 bits (381), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 83/216 (38%), Positives = 113/216 (52%), Gaps = 28/216 (12%)
Query: 3 FHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELF 62
F P+ ++ LWI P W PD A N+ L+PGLAFGTG H TT+LCL L + I GGE
Sbjct: 108 FDPIRISGRLWITPTWHDAPDANAINLALDPGLAFGTGSHPTTRLCLQWLDANICGGESV 167
Query: 63 LDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFT 122
LDYG GSGIL IAAIK GA G+DIDPQ ++++ NA N + +PD
Sbjct: 168 LDYGCGSGILAIAAIKLGATDVTGIDIDPQAVQASRDNAVQNQV----TAAFGLPDT--- 220
Query: 123 ASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGIS 182
+ + ++DV++ANIL NPL L D + S+ + G + +S
Sbjct: 221 ---------------------LEDGRQFDVLVANILANPLRMLGDLLASHVRAGGRIVLS 259
Query: 183 GILSEQLPRIINRYSEFLEDILVSEKDDWRCVSGTK 218
GIL EQ + YS + E + W +SG +
Sbjct: 260 GILEEQAQELSELYSAWFEMDPPVFDEGWTRLSGVR 295
>sp|C6DIJ9|PRMA_PECCP Ribosomal protein L11 methyltransferase OS=Pectobacterium
carotovorum subsp. carotovorum (strain PC1) GN=prmA PE=3
SV=1
Length = 295
Score = 151 bits (381), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 83/218 (38%), Positives = 122/218 (55%), Gaps = 26/218 (11%)
Query: 1 ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
++FHP++ K LWI P W PD A N++L+PGLAFGTG H TT LCL L L G+
Sbjct: 101 DNFHPMQFGKRLWICPSWRDIPDPTAVNVMLDPGLAFGTGTHPTTALCLQWLDGLDLEGK 160
Query: 61 LFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRT 120
+D+G GSGIL IAA+K GAA +G+DIDPQ I+++ NA N + ++++L+L D+
Sbjct: 161 TIIDFGCGSGILAIAALKLGAARAIGIDIDPQAIQASRDNAQRNGVS-ERLELYLPKDQP 219
Query: 121 FTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVG 180
S DVV+ANIL PL +LA I K G +G
Sbjct: 220 ADLSA-------------------------DVVVANILAGPLRELAPLISDLPKAGGHLG 254
Query: 181 ISGILSEQLPRIINRYSEFLEDILVSEKDDWRCVSGTK 218
+SG+L+ Q + Y++ V+E+++W ++G +
Sbjct: 255 LSGVLATQADGVAEAYADKFTLDPVAEREEWCRITGQR 292
>sp|Q9JXW2|PRMA_NEIMB Ribosomal protein L11 methyltransferase OS=Neisseria meningitidis
serogroup B (strain MC58) GN=prmA PE=3 SV=1
Length = 295
Score = 150 bits (378), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 83/217 (38%), Positives = 117/217 (53%), Gaps = 29/217 (13%)
Query: 2 SFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGEL 61
F P+ ++ LWI P W P+ A N+ L+PGLAFGTG H TT+LCL L + +K GE
Sbjct: 107 QFDPIRISDRLWITPSWHEVPEGSAVNLRLDPGLAFGTGSHPTTRLCLKWLDTQLKNGES 166
Query: 62 FLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTF 121
LDYG GSGIL IAA+K GA VGVDID Q +++ NAA NN+ + +PD
Sbjct: 167 VLDYGCGSGILTIAALKLGAGFAVGVDIDEQAVRAGKDNAAQNNVDAQ----FFLPD--- 219
Query: 122 TASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGI 181
G+ + ++DVV+ANIL NPL L + + + K G + +
Sbjct: 220 ---------------------GLPQG-QFDVVVANILANPLRMLGEMLAARTKQGGRIVL 257
Query: 182 SGILSEQLPRIINRYSEFLEDILVSEKDDWRCVSGTK 218
SG+L EQ + YS++ + ++ W +SG K
Sbjct: 258 SGLLDEQAEELGGIYSQWFDLDPAETEEGWARLSGVK 294
>sp|A1KS36|PRMA_NEIMF Ribosomal protein L11 methyltransferase OS=Neisseria meningitidis
serogroup C / serotype 2a (strain ATCC 700532 / FAM18)
GN=prmA PE=3 SV=1
Length = 295
Score = 150 bits (378), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 83/217 (38%), Positives = 117/217 (53%), Gaps = 29/217 (13%)
Query: 2 SFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGEL 61
F P+ ++ LWI P W P+ A N+ L+PGLAFGTG H TT+LCL L + +K GE
Sbjct: 107 QFDPIRISDRLWITPSWHEAPEGTAVNLRLDPGLAFGTGSHPTTRLCLKWLDTQLKNGES 166
Query: 62 FLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTF 121
LDYG GSGIL IAA+K GA VGVDID Q +++ NA NN+ + +PD
Sbjct: 167 VLDYGCGSGILTIAALKLGAGSAVGVDIDEQAVRAGKDNAEQNNVDAQ----FFLPD--- 219
Query: 122 TASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGI 181
G+ + ++DVV+ANIL NPL L + + + K G + +
Sbjct: 220 ---------------------GLPQG-QFDVVVANILANPLRMLGEMLAARTKQGGRIVL 257
Query: 182 SGILSEQLPRIINRYSEFLEDILVSEKDDWRCVSGTK 218
SG+L EQ + YS++ + ++ W +SGTK
Sbjct: 258 SGLLDEQAEELGGIYSQWFDLDPAETEEGWARLSGTK 294
>sp|Q21MK7|PRMA_SACD2 Ribosomal protein L11 methyltransferase OS=Saccharophagus degradans
(strain 2-40 / ATCC 43961 / DSM 17024) GN=prmA PE=3 SV=1
Length = 292
Score = 150 bits (378), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 86/219 (39%), Positives = 119/219 (54%), Gaps = 28/219 (12%)
Query: 1 ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCL-LLLQSLIKGG 59
+++HP++ WI P W +PPD A N++L+PGLAFGTG H TT +CL L Q +K
Sbjct: 100 KNYHPIQCGPHFWICPSWLSPPDPNAINLLLDPGLAFGTGTHPTTFMCLEWLAQQDVKNL 159
Query: 60 ELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDR 119
EL +DYG GSGILGIA + GA VGVDIDPQ + + +NA N +
Sbjct: 160 EL-IDYGCGSGILGIAGLLMGANSAVGVDIDPQALLATQENAVRNGLA----------KE 208
Query: 120 TFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVV 179
F M +R + E D+V+ANIL PL +LA +++ K G +
Sbjct: 209 AFPVFMPQR----------------APKEPVDMVLANILAGPLVELAPALIALVKSGGKI 252
Query: 180 GISGILSEQLPRIINRYSEFLEDILVSEKDDWRCVSGTK 218
+SG+L Q II+ Y +E V EKD+W C++G K
Sbjct: 253 CLSGVLGTQRTSIISAYEHAIEFTEVREKDEWICLAGIK 291
>sp|A4JBD7|PRMA_BURVG Ribosomal protein L11 methyltransferase OS=Burkholderia
vietnamiensis (strain G4 / LMG 22486) GN=prmA PE=3 SV=1
Length = 300
Score = 149 bits (377), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 80/216 (37%), Positives = 119/216 (55%), Gaps = 29/216 (13%)
Query: 3 FHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELF 62
F P+ + + +W+VP W PD A + L+PGLAFGTG H TT+LC+ L+ +K G+
Sbjct: 110 FEPIPIGERIWVVPSWHDAPDPDALILELDPGLAFGTGSHPTTRLCMEWLEQTVKPGQSV 169
Query: 63 LDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFT 122
LDYG GSGIL I A K GA +G+DIDPQ ++SA QN+ N+ + +PD
Sbjct: 170 LDYGCGSGILAILARKCGADPVIGIDIDPQAVESARQNSERNHAD----VTYGLPDAC-- 223
Query: 123 ASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGIS 182
DG E+D+V+ANIL NPL +A + S KPG + +S
Sbjct: 224 ------PDG-----------------EFDIVVANILSNPLKLMASMLASKVKPGGRIALS 260
Query: 183 GILSEQLPRIINRYSEFLEDILVSEKDDWRCVSGTK 218
G+L+ Q + Y+ +++ + E + W C++GT+
Sbjct: 261 GVLARQADEVAAVYARYVDISVWREHEGWVCLAGTR 296
>sp|B1JKF2|PRMA_YERPY Ribosomal protein L11 methyltransferase OS=Yersinia
pseudotuberculosis serotype O:3 (strain YPIII) GN=prmA
PE=3 SV=1
Length = 293
Score = 149 bits (377), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 86/219 (39%), Positives = 123/219 (56%), Gaps = 28/219 (12%)
Query: 1 ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
++FHP+ + LWI P W PD A N++L+PGLAFGTG H TT LCL L SL G+
Sbjct: 101 DNFHPMRFGERLWICPSWRDVPDPTAVNVMLDPGLAFGTGTHPTTALCLQWLDSLDLNGK 160
Query: 61 LFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRT 120
+D+G GSGIL IAA+K GAA +G+DIDPQ I+++ NA N + ++++L+L D+
Sbjct: 161 TLIDFGCGSGILAIAALKLGAARAIGIDIDPQAIQASRDNAQRNGVS-ERLELYLAKDQP 219
Query: 121 FTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVG 180
S DVV+ANIL PL +LA I G +G
Sbjct: 220 AELSA-------------------------DVVVANILAGPLRELAPLISVLPTTGGHLG 254
Query: 181 ISGILSEQLPRIINRYSE-FLEDILVSEKDDWRCVSGTK 218
+SG+L+ Q + Y + F+ D V+EK++W ++G K
Sbjct: 255 LSGVLATQAAGVAQAYEDKFILDP-VAEKEEWCRITGIK 292
>sp|Q8ZAX6|PRMA_YERPE Ribosomal protein L11 methyltransferase OS=Yersinia pestis GN=prmA
PE=3 SV=1
Length = 293
Score = 149 bits (377), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 86/219 (39%), Positives = 123/219 (56%), Gaps = 28/219 (12%)
Query: 1 ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
++FHP+ + LWI P W PD A N++L+PGLAFGTG H TT LCL L SL G+
Sbjct: 101 DNFHPMRFGERLWICPSWRDVPDPTAVNVMLDPGLAFGTGTHPTTALCLQWLDSLDLNGK 160
Query: 61 LFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRT 120
+D+G GSGIL IAA+K GAA +G+DIDPQ I+++ NA N + ++++L+L D+
Sbjct: 161 TLIDFGCGSGILAIAALKLGAARAIGIDIDPQAIQASRDNAQRNGVS-ERLELYLAKDQP 219
Query: 121 FTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVG 180
S DVV+ANIL PL +LA I G +G
Sbjct: 220 AELSA-------------------------DVVVANILAGPLRELAPLISVLPTTGGHLG 254
Query: 181 ISGILSEQLPRIINRYSE-FLEDILVSEKDDWRCVSGTK 218
+SG+L+ Q + Y + F+ D V+EK++W ++G K
Sbjct: 255 LSGVLATQAAGVAQAYEDKFILDP-VAEKEEWCRITGIK 292
>sp|A7FDQ3|PRMA_YERP3 Ribosomal protein L11 methyltransferase OS=Yersinia
pseudotuberculosis serotype O:1b (strain IP 31758)
GN=prmA PE=3 SV=1
Length = 293
Score = 149 bits (377), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 86/219 (39%), Positives = 123/219 (56%), Gaps = 28/219 (12%)
Query: 1 ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
++FHP+ + LWI P W PD A N++L+PGLAFGTG H TT LCL L SL G+
Sbjct: 101 DNFHPMRFGERLWICPSWRDVPDPTAVNVMLDPGLAFGTGTHPTTALCLQWLDSLDLNGK 160
Query: 61 LFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRT 120
+D+G GSGIL IAA+K GAA +G+DIDPQ I+++ NA N + ++++L+L D+
Sbjct: 161 TLIDFGCGSGILAIAALKLGAARAIGIDIDPQAIQASRDNAQRNGVS-ERLELYLAKDQP 219
Query: 121 FTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVG 180
S DVV+ANIL PL +LA I G +G
Sbjct: 220 AELSA-------------------------DVVVANILAGPLRELAPLISVLPTTGGHLG 254
Query: 181 ISGILSEQLPRIINRYSE-FLEDILVSEKDDWRCVSGTK 218
+SG+L+ Q + Y + F+ D V+EK++W ++G K
Sbjct: 255 LSGVLATQAAGVAQAYEDKFILDP-VAEKEEWCRITGIK 292
>sp|A7MXI3|PRMA_VIBHB Ribosomal protein L11 methyltransferase OS=Vibrio harveyi (strain
ATCC BAA-1116 / BB120) GN=prmA PE=3 SV=1
Length = 295
Score = 149 bits (377), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 83/218 (38%), Positives = 120/218 (55%), Gaps = 26/218 (11%)
Query: 1 ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
E+FHP++ + LWI P W P+ A N++L+PGLAFGTG H TT LCL L+SL G+
Sbjct: 102 ENFHPMKFGERLWICPSWREIPEPDAVNVMLDPGLAFGTGTHPTTALCLEWLESLDLSGK 161
Query: 61 LFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRT 120
+D+G GSGIL IAAIK GA +G+DIDPQ ++++ NA N + +
Sbjct: 162 TVIDFGCGSGILAIAAIKLGAEKVIGIDIDPQALQASRDNAERNGVANQ----------- 210
Query: 121 FTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVG 180
+ +L ++ G+ DVV+ANIL PL +LA I S KP +
Sbjct: 211 -----------LEVFLPQNQPEGLI----ADVVVANILAGPLRELAPIIKSLVKPNGDLA 255
Query: 181 ISGILSEQLPRIINRYSEFLEDILVSEKDDWRCVSGTK 218
+SG+L Q + N Y + L ++E+ +W +SG K
Sbjct: 256 MSGVLDTQAEDVANHYRDELHIDPIAEQSEWCRISGRK 293
>sp|Q39JS9|PRMA_BURS3 Ribosomal protein L11 methyltransferase OS=Burkholderia sp. (strain
383) GN=prmA PE=3 SV=1
Length = 300
Score = 149 bits (376), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 80/216 (37%), Positives = 119/216 (55%), Gaps = 29/216 (13%)
Query: 3 FHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELF 62
F P+ + + +W+VP W PD A + L+PGLAFGTG H TT+LC+ L+ +K G+
Sbjct: 110 FEPIPIGERIWVVPSWHDAPDPDALILELDPGLAFGTGSHPTTRLCMEWLEQSVKPGQSV 169
Query: 63 LDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFT 122
LDYG GSGIL I A K GA +G+DIDPQ ++SA QN+ N+ + +PD
Sbjct: 170 LDYGCGSGILAILAKKCGANPVIGIDIDPQAVESARQNSERNHAD----VTYGLPDAC-- 223
Query: 123 ASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGIS 182
DG E+D+V+ANIL NPL +A + S KPG + +S
Sbjct: 224 ------PDG-----------------EFDIVVANILSNPLKLMASMLASKVKPGGRIALS 260
Query: 183 GILSEQLPRIINRYSEFLEDILVSEKDDWRCVSGTK 218
G+L+ Q + Y+ +++ + E + W C++GT+
Sbjct: 261 GVLARQADEVAAVYARYVDISVWREHEGWVCLAGTR 296
>sp|B2SYT3|PRMA_BURPP Ribosomal protein L11 methyltransferase OS=Burkholderia
phytofirmans (strain DSM 17436 / PsJN) GN=prmA PE=3 SV=1
Length = 300
Score = 149 bits (376), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 79/216 (36%), Positives = 118/216 (54%), Gaps = 29/216 (13%)
Query: 3 FHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELF 62
F P+++ + +W+VP W PD +A + L+PGLAFGTG H TT+LC+ L+ ++ +
Sbjct: 110 FDPIKIGERIWVVPSWHDAPDPEALVLELDPGLAFGTGSHPTTRLCMEWLEQSVQPEQSV 169
Query: 63 LDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFT 122
LDYG GSGIL I A K GA G+DIDPQ ++SA N+ N + ++ +PD T
Sbjct: 170 LDYGCGSGILAILAKKCGANPVYGIDIDPQAVESARHNSERN----RAEVIYGLPDECPT 225
Query: 123 ASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGIS 182
E+D+V+ANIL NPL +A + S KPG + +S
Sbjct: 226 G-------------------------EFDIVVANILSNPLKLMASMLTSKVKPGGKIALS 260
Query: 183 GILSEQLPRIINRYSEFLEDILVSEKDDWRCVSGTK 218
GIL+ Q + YS +++ + E + W C+SGT+
Sbjct: 261 GILARQADEVAQVYSRWIDISVWREHEGWVCLSGTR 296
>sp|Q9CLW2|PRMA_PASMU Ribosomal protein L11 methyltransferase OS=Pasteurella multocida
(strain Pm70) GN=prmA PE=3 SV=1
Length = 293
Score = 149 bits (376), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 84/216 (38%), Positives = 117/216 (54%), Gaps = 26/216 (12%)
Query: 1 ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
++FHP+ K LWI P W PD ATN++L+PGLAFGTG H TT LCL L SL +
Sbjct: 101 DNFHPMRFGKRLWICPSWREVPDENATNVMLDPGLAFGTGTHPTTALCLEWLDSLDLQDK 160
Query: 61 LFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRT 120
+D+G GSGIL IAA+K GA VG+DIDPQ I ++ NA N + +++L L D+
Sbjct: 161 TVIDFGCGSGILAIAALKLGAKSAVGIDIDPQAILASRNNAEQNGVA-DRLQLFLSEDKP 219
Query: 121 FTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVG 180
+ DVV+ANIL PL +L I KP V+G
Sbjct: 220 ADL-------------------------KADVVVANILAGPLKELYPVIRQLVKPNGVLG 254
Query: 181 ISGILSEQLPRIINRYSEFLEDILVSEKDDWRCVSG 216
+SGIL+ Q + + Y++ V E+++W ++G
Sbjct: 255 LSGILATQASSVCDAYAQSFVLEPVEEREEWCRITG 290
>sp|Q8EJR7|PRMA_SHEON Ribosomal protein L11 methyltransferase OS=Shewanella oneidensis
(strain MR-1) GN=prmA PE=3 SV=1
Length = 293
Score = 149 bits (376), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 82/218 (37%), Positives = 118/218 (54%), Gaps = 26/218 (11%)
Query: 1 ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
+++HP++ K LWI P W PD A N+IL+PGLAFGTG H TT LCL L SL E
Sbjct: 101 DNYHPIQFGKRLWICPSWREVPDPTAVNVILDPGLAFGTGTHPTTALCLEWLDSLDLSNE 160
Query: 61 LFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRT 120
+D+G GSGIL +AA+K GA G+DID Q I ++ NA N++ +++L+L D+
Sbjct: 161 EVIDFGCGSGILAVAALKLGAKKVTGIDIDYQAIDASKANAERNDVA-DQLELYLPEDQP 219
Query: 121 FTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVG 180
DV++ANIL PL +LA I K G +
Sbjct: 220 ADLKA-------------------------DVLVANILAGPLRELAPLIAERVKTGGKLA 254
Query: 181 ISGILSEQLPRIINRYSEFLEDILVSEKDDWRCVSGTK 218
+SG+L EQ I + YS++ + + K+DW ++GT+
Sbjct: 255 LSGLLKEQAQEISDFYSQWFDMDEAAHKEDWSRLTGTR 292
>sp|A8GK75|PRMA_SERP5 Ribosomal protein L11 methyltransferase OS=Serratia proteamaculans
(strain 568) GN=prmA PE=3 SV=1
Length = 293
Score = 149 bits (375), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 82/218 (37%), Positives = 122/218 (55%), Gaps = 26/218 (11%)
Query: 1 ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
++FHP+ + LWI P W PD A N++L+PGLAFGTG H TT LCL L L G+
Sbjct: 101 DNFHPMRFGQRLWICPSWRDVPDPDAVNVMLDPGLAFGTGTHPTTALCLQWLDGLDLAGK 160
Query: 61 LFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRT 120
+D+G GSGIL IAA+K GAA +G+DIDPQ I+++ NA N + ++++L+L D+
Sbjct: 161 TIIDFGCGSGILAIAALKLGAARAIGIDIDPQAIQASRDNAQRNGVS-ERLELYLPKDQP 219
Query: 121 FTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVG 180
+ L+ DVV+ANIL PL +LA I K G +G
Sbjct: 220 ------------ADLLA-------------DVVVANILAGPLRELAPLIGCLPKSGGHLG 254
Query: 181 ISGILSEQLPRIINRYSEFLEDILVSEKDDWRCVSGTK 218
+SG+L+ Q + Y + V+E+++W ++G +
Sbjct: 255 LSGVLATQAASVAQAYEDKFTLDPVAEREEWCRITGQR 292
>sp|Q3SMB4|PRMA_THIDA Ribosomal protein L11 methyltransferase OS=Thiobacillus
denitrificans (strain ATCC 25259) GN=prmA PE=3 SV=1
Length = 296
Score = 149 bits (375), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 85/216 (39%), Positives = 113/216 (52%), Gaps = 29/216 (13%)
Query: 3 FHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELF 62
F P+ ++ LWIVP W PD +A N+ L+PGLAFGTG H TT+LCL L + ++GGE
Sbjct: 109 FDPIPISARLWIVPTWHEAPDSRALNLKLDPGLAFGTGSHPTTRLCLRWLDANLRGGETL 168
Query: 63 LDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFT 122
LDYG GSGIL IAA K GA GVDIDPQ + ++ NAALN + D F
Sbjct: 169 LDYGCGSGILAIAAAKLGARRVEGVDIDPQAVSASRDNAALNEV-----------DAHFG 217
Query: 123 ASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGIS 182
+ G EYDVV+ANIL NPL +A + + G + +S
Sbjct: 218 ------------------LPGELAAGEYDVVVANILTNPLKAMAPLLAGRVRSGGSLVLS 259
Query: 183 GILSEQLPRIINRYSEFLEDILVSEKDDWRCVSGTK 218
GIL+EQ ++ Y + + + W + G K
Sbjct: 260 GILAEQAEDVMAVYRPWFVFDAPASDEGWVRLVGVK 295
>sp|A1RFA3|PRMA_SHESW Ribosomal protein L11 methyltransferase OS=Shewanella sp. (strain
W3-18-1) GN=prmA PE=3 SV=1
Length = 293
Score = 149 bits (375), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 83/218 (38%), Positives = 116/218 (53%), Gaps = 26/218 (11%)
Query: 1 ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
++FHP++ LWI P W PD A N+IL+PGLAFGTG H TT LCL L SL E
Sbjct: 101 DNFHPIQFGSRLWICPSWREIPDPTAVNVILDPGLAFGTGTHPTTALCLEWLDSLDLSNE 160
Query: 61 LFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRT 120
+D+G GSGIL +AA+K GA G+DID Q I ++ NA NN+ K+ L+L D+
Sbjct: 161 EVIDFGCGSGILAVAALKLGAKKVTGIDIDYQAIDASRANAERNNVA-DKLALYLPEDQP 219
Query: 121 FTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVG 180
+ DV++ANIL PL +LA I K G +
Sbjct: 220 ADL-------------------------KADVLVANILAGPLRELAPLIAERVKSGGKLA 254
Query: 181 ISGILSEQLPRIINRYSEFLEDILVSEKDDWRCVSGTK 218
+SG+L EQ I + YS++ + + K+DW ++G +
Sbjct: 255 LSGLLKEQAQEISDFYSQWFDMDEAAHKEDWSRLTGKR 292
>sp|A4YB19|PRMA_SHEPC Ribosomal protein L11 methyltransferase OS=Shewanella putrefaciens
(strain CN-32 / ATCC BAA-453) GN=prmA PE=3 SV=1
Length = 293
Score = 149 bits (375), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 83/218 (38%), Positives = 116/218 (53%), Gaps = 26/218 (11%)
Query: 1 ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
++FHP++ LWI P W PD A N+IL+PGLAFGTG H TT LCL L SL E
Sbjct: 101 DNFHPIQFGSRLWICPSWREIPDPTAVNVILDPGLAFGTGTHPTTALCLEWLDSLDLSNE 160
Query: 61 LFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRT 120
+D+G GSGIL +AA+K GA G+DID Q I ++ NA NN+ K+ L+L D+
Sbjct: 161 EVIDFGCGSGILAVAALKLGAKKVTGIDIDYQAIDASRANAERNNVA-DKLALYLPEDQP 219
Query: 121 FTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVG 180
+ DV++ANIL PL +LA I K G +
Sbjct: 220 ADL-------------------------KADVLVANILAGPLRELAPLIAERVKSGGKLA 254
Query: 181 ISGILSEQLPRIINRYSEFLEDILVSEKDDWRCVSGTK 218
+SG+L EQ I + YS++ + + K+DW ++G +
Sbjct: 255 LSGLLKEQAQEISDFYSQWFDMDEAAHKEDWSRLTGKR 292
>sp|Q665E3|PRMA_YERPS Ribosomal protein L11 methyltransferase OS=Yersinia
pseudotuberculosis serotype I (strain IP32953) GN=prmA
PE=3 SV=2
Length = 293
Score = 148 bits (374), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 86/219 (39%), Positives = 123/219 (56%), Gaps = 28/219 (12%)
Query: 1 ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
++FHP+ + LWI P W PD A N++L+PGLAFGTG H TT LCL L SL G+
Sbjct: 101 DNFHPMRFGERLWICPSWRDVPDPTAVNVMLDPGLAFGTGTHPTTALCLQWLDSLDLNGK 160
Query: 61 LFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRT 120
+D+G GSGIL IAA+K GAA +G+DIDPQ I+++ NA N + ++++L+L D+
Sbjct: 161 TLIDFGCGSGILAIAALKLGAARAIGIDIDPQAIQASRDNAQRNGVS-ERLELYLAKDQP 219
Query: 121 FTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVG 180
S DVV+ANIL PL +LA I G +G
Sbjct: 220 AELSA-------------------------DVVVANILAGPLRELALLISVLPTTGGHLG 254
Query: 181 ISGILSEQLPRIINRYSE-FLEDILVSEKDDWRCVSGTK 218
+SG+L+ Q + Y + F+ D V+EK++W ++G K
Sbjct: 255 LSGVLATQAAGVAQAYEDKFILDP-VAEKEEWCRITGIK 292
>sp|B2K467|PRMA_YERPB Ribosomal protein L11 methyltransferase OS=Yersinia
pseudotuberculosis serotype IB (strain PB1/+) GN=prmA
PE=3 SV=1
Length = 293
Score = 148 bits (374), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 86/219 (39%), Positives = 123/219 (56%), Gaps = 28/219 (12%)
Query: 1 ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
++FHP+ + LWI P W PD A N++L+PGLAFGTG H TT LCL L SL G+
Sbjct: 101 DNFHPMRFGERLWICPSWRDVPDPTAVNVMLDPGLAFGTGTHPTTALCLQWLDSLDLNGK 160
Query: 61 LFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRT 120
+D+G GSGIL IAA+K GAA +G+DIDPQ I+++ NA N + ++++L+L D+
Sbjct: 161 TLIDFGCGSGILAIAALKLGAARAIGIDIDPQAIQASRDNAQRNGVS-ERLELYLAKDQP 219
Query: 121 FTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVG 180
S DVV+ANIL PL +LA I G +G
Sbjct: 220 AELSA-------------------------DVVVANILAGPLRELALLISVLPTTGGHLG 254
Query: 181 ISGILSEQLPRIINRYSE-FLEDILVSEKDDWRCVSGTK 218
+SG+L+ Q + Y + F+ D V+EK++W ++G K
Sbjct: 255 LSGVLATQAAGVAQAYEDKFILDP-VAEKEEWCRITGIK 292
>sp|Q5FAH7|PRMA_NEIG1 Ribosomal protein L11 methyltransferase OS=Neisseria gonorrhoeae
(strain ATCC 700825 / FA 1090) GN=prmA PE=3 SV=1
Length = 295
Score = 148 bits (374), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 85/218 (38%), Positives = 116/218 (53%), Gaps = 31/218 (14%)
Query: 2 SFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGEL 61
F P+ ++ LWI P W P+ A N+ L+PGLAFGTG H TT+LCL L + +K GE
Sbjct: 107 QFDPIRISDRLWITPSWHEAPEGCAVNLRLDPGLAFGTGSHPTTRLCLKWLDTQLKNGES 166
Query: 62 FLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTF 121
LDYG GSGIL IAA+K GA VGVDID Q ++S NA NN+ + +PD
Sbjct: 167 VLDYGCGSGILTIAALKLGAGSAVGVDIDEQAVRSGRDNAEQNNVDAQ----FFLPDSLP 222
Query: 122 TASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGI 181
++DVV+ANIL NPL L + + + K G + +
Sbjct: 223 QG-------------------------QFDVVVANILANPLRMLGEMLAARTKQGGRIVL 257
Query: 182 SGILSEQLPRIINRYSEFLEDILVSEKDD-WRCVSGTK 218
SG+L EQ + YS++ D+ +E D+ W +SG K
Sbjct: 258 SGLLDEQAEELGGIYSQWF-DLDPAETDEGWARLSGVK 294
>sp|Q088J8|PRMA_SHEFN Ribosomal protein L11 methyltransferase OS=Shewanella frigidimarina
(strain NCIMB 400) GN=prmA PE=3 SV=1
Length = 293
Score = 148 bits (373), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 86/218 (39%), Positives = 116/218 (53%), Gaps = 26/218 (11%)
Query: 1 ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
+SFHP++ LWI P W PD A N+IL+PGLAFGTG H TT LCL L SL +
Sbjct: 101 DSFHPIQFGSRLWICPSWREIPDPTAVNVILDPGLAFGTGTHPTTALCLEWLDSLDLSNQ 160
Query: 61 LFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRT 120
+D+G GSGIL IAAIK GA GVDID Q I ++ NA N++
Sbjct: 161 EVIDFGCGSGILAIAAIKLGAKKVTGVDIDYQAIDASKANAERNDV-------------- 206
Query: 121 FTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVG 180
VD + YL + + + DV++ANIL PL +LA I K G +
Sbjct: 207 --------VDKLALYLPEDQPANL----QADVLVANILAGPLKELAPLIAEKVKIGGKLA 254
Query: 181 ISGILSEQLPRIINRYSEFLEDILVSEKDDWRCVSGTK 218
+SG+L EQ + + YS++ VS K+DW ++G +
Sbjct: 255 LSGLLQEQAQEVSDFYSQWFIMDPVSNKEDWSRLTGIR 292
>sp|A1JRL5|PRMA_YERE8 Ribosomal protein L11 methyltransferase OS=Yersinia enterocolitica
serotype O:8 / biotype 1B (strain 8081) GN=prmA PE=3
SV=1
Length = 293
Score = 147 bits (372), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 83/218 (38%), Positives = 119/218 (54%), Gaps = 26/218 (11%)
Query: 1 ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
++FHP+ + LWI P W PD A N++L+PGLAFGTG H TT LCL L L G+
Sbjct: 101 DNFHPMRFGERLWICPSWRDVPDPTAVNVMLDPGLAFGTGTHPTTALCLQWLDGLNLAGK 160
Query: 61 LFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRT 120
+D+G GSGIL IAA+K GAA +G+DIDPQ I+++ NA N + ++++L+L D+
Sbjct: 161 TVIDFGCGSGILAIAALKLGAAHAIGIDIDPQAIQASRDNAQRNGVS-ERLELYLAKDQP 219
Query: 121 FTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVG 180
S DVV+ANIL PL +LA I G +G
Sbjct: 220 ADLSA-------------------------DVVVANILAGPLRELAPLISVLPVAGGHLG 254
Query: 181 ISGILSEQLPRIINRYSEFLEDILVSEKDDWRCVSGTK 218
+SG+L+ Q + Y + V+EK++W ++G K
Sbjct: 255 LSGVLATQAAGVAQAYEDKFTLDPVAEKEEWCRITGIK 292
>sp|Q0HQK1|PRMA_SHESR Ribosomal protein L11 methyltransferase OS=Shewanella sp. (strain
MR-7) GN=prmA PE=3 SV=1
Length = 293
Score = 147 bits (371), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 81/218 (37%), Positives = 117/218 (53%), Gaps = 26/218 (11%)
Query: 1 ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
+++HP++ K LWI P W PD A N+IL+PGLAFGTG H TT LCL L SL E
Sbjct: 101 DNYHPIQFGKRLWICPSWREVPDPSAVNVILDPGLAFGTGTHPTTALCLEWLDSLDLSNE 160
Query: 61 LFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRT 120
+D+G GSGIL +AA+K GA G+DID Q I+++ NA N++
Sbjct: 161 EVIDFGCGSGILAVAALKLGAKKVTGIDIDYQAIEASKANAERNDVA------------- 207
Query: 121 FTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVG 180
D + YL + + + DV++ANIL PL +LA I K G +
Sbjct: 208 ---------DQLALYLPEDQPADL----KADVLVANILAGPLRELAPLIAERVKSGGKLA 254
Query: 181 ISGILSEQLPRIINRYSEFLEDILVSEKDDWRCVSGTK 218
+SG+L EQ I + YS++ + + K+DW ++G +
Sbjct: 255 LSGLLKEQAQEISDFYSQWFDMDEAAHKEDWSRLTGKR 292
>sp|Q0HN86|PRMA_SHESM Ribosomal protein L11 methyltransferase OS=Shewanella sp. (strain
MR-4) GN=prmA PE=3 SV=1
Length = 293
Score = 147 bits (371), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 81/218 (37%), Positives = 117/218 (53%), Gaps = 26/218 (11%)
Query: 1 ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
+++HP++ K LWI P W PD A N+IL+PGLAFGTG H TT LCL L SL E
Sbjct: 101 DNYHPIQFGKRLWICPSWREVPDPSAVNVILDPGLAFGTGTHPTTALCLEWLDSLDLSNE 160
Query: 61 LFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRT 120
+D+G GSGIL +AA+K GA G+DID Q I+++ NA N++
Sbjct: 161 EVIDFGCGSGILAVAALKLGAKKVTGIDIDYQAIEASKANAERNDVA------------- 207
Query: 121 FTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVG 180
D + YL + + + DV++ANIL PL +LA I K G +
Sbjct: 208 ---------DQLALYLPEDQPADL----KADVLVANILAGPLRELAPLIAERVKSGGKLA 254
Query: 181 ISGILSEQLPRIINRYSEFLEDILVSEKDDWRCVSGTK 218
+SG+L EQ I + YS++ + + K+DW ++G +
Sbjct: 255 LSGLLKEQAQEISDFYSQWFDMDEAAHKEDWSRLTGKR 292
>sp|A0KS74|PRMA_SHESA Ribosomal protein L11 methyltransferase OS=Shewanella sp. (strain
ANA-3) GN=prmA PE=3 SV=1
Length = 293
Score = 147 bits (371), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 81/218 (37%), Positives = 117/218 (53%), Gaps = 26/218 (11%)
Query: 1 ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
+++HP++ K LWI P W PD A N+IL+PGLAFGTG H TT LCL L SL E
Sbjct: 101 DNYHPIQFGKRLWICPSWREVPDPSAVNVILDPGLAFGTGTHPTTALCLEWLDSLDLSNE 160
Query: 61 LFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRT 120
+D+G GSGIL +AA+K GA G+DID Q I+++ NA N++
Sbjct: 161 EVIDFGCGSGILAVAALKLGAKKVTGIDIDYQAIEASKANAERNDVA------------- 207
Query: 121 FTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVG 180
D + YL + + + DV++ANIL PL +LA I K G +
Sbjct: 208 ---------DQLALYLPEDQPADL----KADVLVANILAGPLRELAPLIAERVKSGGKLA 254
Query: 181 ISGILSEQLPRIINRYSEFLEDILVSEKDDWRCVSGTK 218
+SG+L EQ I + YS++ + + K+DW ++G +
Sbjct: 255 LSGLLKEQAQEISDFYSQWFDMDEAAHKEDWSRLTGKR 292
>sp|Q0AEV2|PRMA_NITEC Ribosomal protein L11 methyltransferase OS=Nitrosomonas eutropha
(strain C91) GN=prmA PE=3 SV=1
Length = 313
Score = 147 bits (371), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 84/216 (38%), Positives = 120/216 (55%), Gaps = 17/216 (7%)
Query: 3 FHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELF 62
F P++++ LW+VP W PD A N+ L+PGLAFGTG H TT+LCL L +K G+
Sbjct: 109 FEPIKISSRLWVVPSWHDLPDPAAINLRLDPGLAFGTGSHPTTQLCLGWLDKFLKPGDSV 168
Query: 63 LDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFT 122
LDYG GSGIL IAA+K GA +GVDIDP I ++ +NA N K+ +FT
Sbjct: 169 LDYGCGSGILAIAALKLGADRVMGVDIDPNAITASLENARNNLCDLDKL--------SFT 220
Query: 123 ASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGIS 182
+++ G H + VV+ANIL NPL LA ++S +PG + +S
Sbjct: 221 TALSFSGGGDPADTRQHPVF---------VVVANILANPLIMLAPVLMSALQPGGRIVLS 271
Query: 183 GILSEQLPRIINRYSEFLEDILVSEKDDWRCVSGTK 218
GIL Q ++ YSE+ + + ++ W ++G K
Sbjct: 272 GILETQADEVLQIYSEWFDMQIAAKDQGWVLLAGRK 307
>sp|B8E680|PRMA_SHEB2 Ribosomal protein L11 methyltransferase OS=Shewanella baltica
(strain OS223) GN=prmA PE=3 SV=1
Length = 293
Score = 147 bits (370), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 82/218 (37%), Positives = 118/218 (54%), Gaps = 26/218 (11%)
Query: 1 ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
++FHP++ LWI P W PD A N+IL+PGLAFGTG H TT LCL L SL E
Sbjct: 101 DNFHPIQFGTRLWICPSWREIPDPTAVNVILDPGLAFGTGTHPTTALCLEWLDSLDLSDE 160
Query: 61 LFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRT 120
+D+G GSGIL +AA+K GA G+DID Q I ++ NA N++ K+ L+L D+
Sbjct: 161 EVIDFGCGSGILAVAALKLGAKNVTGIDIDYQAIDASRANAERNDVA-DKLALYLPEDQ- 218
Query: 121 FTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVG 180
+++ DV++ANIL PL +LA I K G +
Sbjct: 219 -----------------PADLKA-------DVLVANILAGPLRELAPLIAERVKTGGKLA 254
Query: 181 ISGILSEQLPRIINRYSEFLEDILVSEKDDWRCVSGTK 218
+SG+L EQ I + YS++ + + K+DW ++G +
Sbjct: 255 LSGLLKEQAQEISDFYSQWFDMDAAAHKEDWSRLTGKR 292
>sp|C4K4P6|PRMA_HAMD5 Ribosomal protein L11 methyltransferase OS=Hamiltonella defensa
subsp. Acyrthosiphon pisum (strain 5AT) GN=prmA PE=3
SV=1
Length = 305
Score = 146 bits (368), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 82/216 (37%), Positives = 116/216 (53%), Gaps = 26/216 (12%)
Query: 3 FHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELF 62
FHP+ + LW+ P PD A N+IL+PGLAFGTG H TT LCL L SL ++
Sbjct: 110 FHPMRFGQRLWVCPSMQAVPDPSAVNVILDPGLAFGTGTHPTTALCLEWLDSLDLQNKIL 169
Query: 63 LDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFT 122
+D+G GSGIL IAA+K GA +G+DIDPQ I+++ NA N +
Sbjct: 170 IDFGCGSGILAIAALKLGAKQAIGIDIDPQAIEASRDNAQRNGVS--------------- 214
Query: 123 ASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGIS 182
+ +V YLS E + + + DVV+ANIL PL +LA I KP +G+S
Sbjct: 215 -------EHLVLYLSGQEPKNL----QADVVVANILAAPLCELAGVIADLVKPDGYLGLS 263
Query: 183 GILSEQLPRIINRYSEFLEDILVSEKDDWRCVSGTK 218
GIL+ Q ++ Y ++EK++W ++ K
Sbjct: 264 GILNTQSDKVSQAYQHAFCLYPIAEKEEWCRITAVK 299
>sp|Q8DD03|PRMA_VIBVU Ribosomal protein L11 methyltransferase OS=Vibrio vulnificus
(strain CMCP6) GN=prmA PE=3 SV=1
Length = 295
Score = 146 bits (368), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 83/218 (38%), Positives = 116/218 (53%), Gaps = 26/218 (11%)
Query: 1 ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE 60
++FHP++ + LWI P W PD A N++L+PGLAFGTG H TT LCL L+SL G+
Sbjct: 102 DNFHPMKFGQRLWICPSWRDIPDPTAVNVMLDPGLAFGTGTHPTTALCLEWLESLDLSGK 161
Query: 61 LFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRT 120
+D+G GSGIL IAAIK GA +G+DIDPQ + ++ NA N +
Sbjct: 162 TVIDFGCGSGILAIAAIKLGAEKVIGIDIDPQALLASKDNAQRNGVA------------- 208
Query: 121 FTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVG 180
D + YL + G+ DVV+ANIL PL +L+ I KP +
Sbjct: 209 ---------DQLDVYLPQDQPEGLLA----DVVVANILAAPLRELSSIIKGLVKPNGQLA 255
Query: 181 ISGILSEQLPRIINRYSEFLEDILVSEKDDWRCVSGTK 218
+SG+L Q + N Y + L + E+ +W +SG K
Sbjct: 256 MSGVLDTQAEDVANYYRDELHIDPIVEQSEWCRISGRK 293
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.138 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,903,253
Number of Sequences: 539616
Number of extensions: 3685266
Number of successful extensions: 11943
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 509
Number of HSP's successfully gapped in prelim test: 162
Number of HSP's that attempted gapping in prelim test: 10745
Number of HSP's gapped (non-prelim): 784
length of query: 222
length of database: 191,569,459
effective HSP length: 113
effective length of query: 109
effective length of database: 130,592,851
effective search space: 14234620759
effective search space used: 14234620759
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)