Query 047371
Match_columns 222
No_of_seqs 138 out of 1510
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 10:28:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047371.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047371hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06325 PrmA: Ribosomal prote 100.0 2.6E-34 5.6E-39 242.3 16.6 192 1-219 103-295 (295)
2 COG2264 PrmA Ribosomal protein 100.0 5.8E-34 1.3E-38 238.3 18.2 195 1-219 104-300 (300)
3 TIGR00406 prmA ribosomal prote 100.0 1E-28 2.2E-33 209.3 19.8 187 1-212 101-288 (288)
4 PRK00517 prmA ribosomal protei 100.0 5.6E-28 1.2E-32 200.9 19.6 188 1-219 62-250 (250)
5 PF05175 MTS: Methyltransferas 99.8 2.7E-17 5.9E-22 129.2 17.6 157 27-213 2-168 (170)
6 COG2226 UbiE Methylase involve 99.7 6E-17 1.3E-21 132.6 14.5 119 57-199 50-172 (238)
7 PF12847 Methyltransf_18: Meth 99.7 3E-16 6.5E-21 114.2 12.2 103 58-183 1-111 (112)
8 PF01209 Ubie_methyltran: ubiE 99.7 3.7E-16 8.1E-21 128.5 12.6 120 56-199 45-169 (233)
9 PRK09489 rsmC 16S ribosomal RN 99.7 3.5E-15 7.6E-20 129.2 18.3 165 23-219 163-337 (342)
10 COG2813 RsmC 16S RNA G1207 met 99.7 2.7E-15 5.9E-20 125.5 15.8 163 25-218 127-299 (300)
11 TIGR03533 L3_gln_methyl protei 99.7 1.1E-14 2.3E-19 123.3 18.7 145 27-199 90-265 (284)
12 COG4123 Predicted O-methyltran 99.7 1.7E-15 3.7E-20 124.2 13.3 121 57-199 43-185 (248)
13 PRK11805 N5-glutamine S-adenos 99.6 1.3E-14 2.8E-19 124.0 17.9 163 27-217 102-296 (307)
14 TIGR00138 gidB 16S rRNA methyl 99.6 9.6E-15 2.1E-19 115.8 15.8 114 58-198 42-156 (181)
15 PRK08287 cobalt-precorrin-6Y C 99.6 1.5E-14 3.3E-19 115.1 16.9 132 56-213 29-164 (187)
16 PRK15001 SAM-dependent 23S rib 99.6 1.3E-14 2.9E-19 126.6 17.6 148 43-218 215-373 (378)
17 COG2230 Cfa Cyclopropane fatty 99.6 5.8E-15 1.3E-19 123.2 14.4 135 26-186 30-179 (283)
18 PRK15451 tRNA cmo(5)U34 methyl 99.6 5E-15 1.1E-19 123.0 14.0 116 44-184 42-165 (247)
19 TIGR00537 hemK_rel_arch HemK-r 99.6 1.2E-14 2.6E-19 114.9 15.5 128 46-203 9-161 (179)
20 PRK14966 unknown domain/N5-glu 99.6 2.2E-14 4.8E-19 125.8 18.4 164 27-218 223-418 (423)
21 COG2227 UbiG 2-polyprenyl-3-me 99.6 2.1E-15 4.5E-20 122.1 10.9 107 58-190 59-168 (243)
22 PF13847 Methyltransf_31: Meth 99.6 5.9E-15 1.3E-19 113.6 12.7 106 57-185 2-112 (152)
23 PF02353 CMAS: Mycolic acid cy 99.6 4.1E-15 9E-20 125.0 12.6 133 27-185 21-168 (273)
24 PRK14967 putative methyltransf 99.6 3.2E-14 6.9E-19 116.4 16.8 129 44-198 21-174 (223)
25 PRK00107 gidB 16S rRNA methylt 99.6 1.9E-14 4E-19 114.6 14.8 115 55-196 42-157 (187)
26 PRK15128 23S rRNA m(5)C1962 me 99.6 2.9E-14 6.2E-19 125.6 16.7 157 24-199 187-356 (396)
27 PRK13168 rumA 23S rRNA m(5)U19 99.6 1.7E-14 3.8E-19 129.2 15.5 158 26-205 264-422 (443)
28 PF08241 Methyltransf_11: Meth 99.6 5.2E-15 1.1E-19 103.8 9.7 92 63-181 1-95 (95)
29 TIGR02752 MenG_heptapren 2-hep 99.6 4.3E-14 9.4E-19 115.9 16.3 115 56-194 43-162 (231)
30 PLN02244 tocopherol O-methyltr 99.6 1.9E-14 4.1E-19 124.8 14.9 105 57-184 117-224 (340)
31 TIGR00536 hemK_fam HemK family 99.6 1.3E-13 2.8E-18 116.8 19.0 166 26-218 82-282 (284)
32 TIGR00740 methyltransferase, p 99.6 4.1E-14 8.9E-19 116.8 15.2 113 48-185 43-163 (239)
33 PF13659 Methyltransf_26: Meth 99.6 8.6E-15 1.9E-19 107.3 9.7 103 59-182 1-114 (117)
34 PLN02233 ubiquinone biosynthes 99.6 4.1E-14 9E-19 118.4 15.0 109 56-187 71-186 (261)
35 PRK00121 trmB tRNA (guanine-N( 99.6 2.3E-14 5E-19 115.6 13.0 122 56-199 38-172 (202)
36 TIGR03704 PrmC_rel_meth putati 99.6 1.5E-13 3.3E-18 114.3 17.8 159 27-213 55-246 (251)
37 TIGR03534 RF_mod_PrmC protein- 99.6 2.1E-13 4.6E-18 112.8 18.0 134 45-204 74-238 (251)
38 KOG1540 Ubiquinone biosynthesi 99.6 5.5E-14 1.2E-18 114.3 13.6 125 58-204 100-236 (296)
39 TIGR02469 CbiT precorrin-6Y C5 99.6 1.1E-13 2.4E-18 102.0 14.3 104 56-182 17-121 (124)
40 PRK11207 tellurite resistance 99.6 4.8E-14 1.1E-18 113.2 13.2 98 58-181 30-132 (197)
41 TIGR00477 tehB tellurite resis 99.6 3.7E-14 8E-19 113.7 11.4 97 58-181 30-131 (195)
42 PRK10258 biotin biosynthesis p 99.6 1.2E-13 2.7E-18 114.7 14.8 110 58-197 42-154 (251)
43 COG2890 HemK Methylase of poly 99.6 2.9E-13 6.2E-18 114.3 16.7 143 27-199 81-253 (280)
44 COG2242 CobL Precorrin-6B meth 99.6 3.2E-13 6.8E-18 105.8 15.5 119 56-199 32-151 (187)
45 PLN02396 hexaprenyldihydroxybe 99.5 3.9E-14 8.4E-19 121.6 11.1 103 58-184 131-236 (322)
46 PRK11036 putative S-adenosyl-L 99.5 8E-14 1.7E-18 116.2 12.3 109 51-182 37-148 (255)
47 PTZ00098 phosphoethanolamine N 99.5 1.1E-13 2.4E-18 116.0 12.7 111 49-185 42-158 (263)
48 KOG1270 Methyltransferases [Co 99.5 1.5E-14 3.2E-19 118.2 7.1 101 59-185 90-197 (282)
49 PRK01544 bifunctional N5-gluta 99.5 4.3E-13 9.4E-18 121.8 17.2 116 59-199 139-284 (506)
50 PRK03522 rumB 23S rRNA methylu 99.5 3.3E-13 7.1E-18 115.9 15.2 144 27-195 141-286 (315)
51 PRK13944 protein-L-isoaspartat 99.5 4.3E-13 9.3E-18 108.4 14.8 101 56-182 70-172 (205)
52 PRK14968 putative methyltransf 99.5 8.5E-13 1.8E-17 104.4 16.2 119 57-199 22-164 (188)
53 TIGR00080 pimt protein-L-isoas 99.5 3.4E-13 7.3E-18 109.7 14.0 100 56-182 75-176 (215)
54 PRK11783 rlmL 23S rRNA m(2)G24 99.5 3.5E-13 7.6E-18 126.9 15.7 139 26-186 507-659 (702)
55 PRK00377 cbiT cobalt-precorrin 99.5 6.2E-13 1.3E-17 106.8 15.0 122 56-199 38-161 (198)
56 PRK11873 arsM arsenite S-adeno 99.5 2.5E-13 5.5E-18 114.1 13.1 105 56-184 75-184 (272)
57 PRK12335 tellurite resistance 99.5 5E-13 1.1E-17 113.3 14.9 127 26-181 88-221 (287)
58 COG1092 Predicted SAM-dependen 99.5 4.6E-13 1E-17 117.0 14.7 155 25-198 185-352 (393)
59 PRK09328 N5-glutamine S-adenos 99.5 2.4E-12 5.2E-17 108.1 18.5 149 27-204 78-259 (275)
60 PRK14103 trans-aconitate 2-met 99.5 2.3E-13 5E-18 113.4 12.0 103 49-183 19-126 (255)
61 TIGR01177 conserved hypothetic 99.5 8.3E-13 1.8E-17 114.1 15.6 104 56-184 180-295 (329)
62 TIGR00091 tRNA (guanine-N(7)-) 99.5 4.9E-13 1.1E-17 107.1 12.5 121 58-199 16-148 (194)
63 PF10672 Methyltrans_SAM: S-ad 99.5 7.7E-13 1.7E-17 111.4 13.7 156 24-199 90-255 (286)
64 PRK15068 tRNA mo(5)U34 methylt 99.5 5.6E-13 1.2E-17 114.7 12.9 102 58-183 122-226 (322)
65 PRK01683 trans-aconitate 2-met 99.5 5.5E-13 1.2E-17 111.2 12.5 105 49-183 21-130 (258)
66 PRK14901 16S rRNA methyltransf 99.5 9.5E-13 2.1E-17 117.7 14.8 144 36-199 228-403 (434)
67 PRK11705 cyclopropane fatty ac 99.5 4.9E-13 1.1E-17 117.6 12.3 129 26-184 126-268 (383)
68 PRK10909 rsmD 16S rRNA m(2)G96 99.5 1.6E-12 3.4E-17 104.5 14.1 122 42-186 34-162 (199)
69 PRK07402 precorrin-6B methylas 99.5 3.2E-12 7E-17 102.5 15.7 133 42-198 22-157 (196)
70 PRK13942 protein-L-isoaspartat 99.5 2E-12 4.3E-17 105.1 14.5 100 56-182 74-175 (212)
71 TIGR02085 meth_trns_rumB 23S r 99.5 1.4E-12 2.9E-17 114.6 14.6 144 26-195 200-346 (374)
72 PLN02336 phosphoethanolamine N 99.5 1.1E-12 2.4E-17 118.5 14.0 104 56-184 264-370 (475)
73 TIGR00479 rumA 23S rRNA (uraci 99.5 1.5E-12 3.2E-17 116.4 14.7 155 26-203 259-416 (431)
74 TIGR00446 nop2p NOL1/NOP2/sun 99.5 1.8E-12 3.9E-17 108.7 14.0 119 56-198 69-216 (264)
75 PF13649 Methyltransf_25: Meth 99.5 5.7E-13 1.2E-17 95.5 9.5 91 62-177 1-101 (101)
76 TIGR00452 methyltransferase, p 99.5 7.4E-13 1.6E-17 113.3 11.8 103 57-183 120-225 (314)
77 PF08003 Methyltransf_9: Prote 99.4 6.4E-13 1.4E-17 111.4 10.6 132 5-184 86-220 (315)
78 PRK14903 16S rRNA methyltransf 99.4 1.9E-12 4.2E-17 115.5 14.3 140 36-198 213-384 (431)
79 KOG1271 Methyltransferases [Ge 99.4 2.1E-12 4.5E-17 100.3 12.2 120 60-203 69-201 (227)
80 TIGR02072 BioC biotin biosynth 99.4 3.3E-12 7.1E-17 104.5 14.3 110 58-195 34-147 (240)
81 PF03848 TehB: Tellurite resis 99.4 1.9E-12 4.1E-17 103.0 12.2 99 58-183 30-133 (192)
82 PRK11188 rrmJ 23S rRNA methylt 99.4 3.4E-12 7.4E-17 103.5 13.5 124 56-206 49-188 (209)
83 PF13489 Methyltransf_23: Meth 99.4 1.4E-12 3.1E-17 100.3 10.5 96 56-186 20-118 (161)
84 PLN02490 MPBQ/MSBQ methyltrans 99.4 6.6E-12 1.4E-16 108.4 15.3 124 57-207 112-256 (340)
85 PRK10901 16S rRNA methyltransf 99.4 5.6E-12 1.2E-16 112.5 15.3 121 56-199 242-391 (427)
86 smart00828 PKS_MT Methyltransf 99.4 2.2E-12 4.8E-17 105.2 11.6 101 60-184 1-105 (224)
87 PRK04457 spermidine synthase; 99.4 2.3E-11 4.9E-16 101.9 17.0 136 43-201 52-196 (262)
88 TIGR00563 rsmB ribosomal RNA s 99.4 8.8E-12 1.9E-16 111.3 15.3 142 37-199 215-387 (426)
89 PRK04266 fibrillarin; Provisio 99.4 7.7E-11 1.7E-15 96.6 19.6 103 56-181 70-174 (226)
90 PRK14904 16S rRNA methyltransf 99.4 8E-12 1.7E-16 112.1 15.0 104 56-184 248-378 (445)
91 COG2265 TrmA SAM-dependent met 99.4 5.5E-12 1.2E-16 112.1 13.6 152 26-201 260-414 (432)
92 PRK14902 16S rRNA methyltransf 99.4 8.5E-12 1.8E-16 111.9 15.0 120 56-198 248-397 (444)
93 PRK06922 hypothetical protein; 99.4 4.8E-12 1E-16 116.0 13.5 103 58-183 418-537 (677)
94 PF05401 NodS: Nodulation prot 99.4 5.8E-12 1.3E-16 99.6 12.2 117 60-204 45-176 (201)
95 PLN03075 nicotianamine synthas 99.4 1.4E-11 3E-16 104.0 15.1 116 44-182 108-232 (296)
96 PF08242 Methyltransf_12: Meth 99.4 1.6E-13 3.5E-18 97.8 2.9 95 63-179 1-99 (99)
97 COG4106 Tam Trans-aconitate me 99.4 1E-12 2.2E-17 104.6 7.5 108 45-182 16-128 (257)
98 PRK11088 rrmA 23S rRNA methylt 99.4 5.9E-12 1.3E-16 106.0 12.6 120 44-196 70-194 (272)
99 PRK14121 tRNA (guanine-N(7)-)- 99.4 8.3E-12 1.8E-16 109.0 13.7 117 58-196 122-248 (390)
100 COG2519 GCD14 tRNA(1-methylade 99.4 1.4E-11 3.1E-16 100.7 14.2 124 56-205 92-218 (256)
101 PRK00216 ubiE ubiquinone/menaq 99.4 2.5E-11 5.5E-16 99.4 15.5 105 57-184 50-159 (239)
102 PRK05785 hypothetical protein; 99.4 1.7E-11 3.6E-16 100.6 14.3 95 50-176 43-140 (226)
103 PRK00312 pcm protein-L-isoaspa 99.4 2.3E-11 4.9E-16 98.7 14.4 99 56-182 76-174 (212)
104 PRK08317 hypothetical protein; 99.4 2.2E-11 4.8E-16 99.4 14.3 103 56-183 17-124 (241)
105 COG2518 Pcm Protein-L-isoaspar 99.4 1.1E-11 2.3E-16 99.2 11.8 99 56-182 70-168 (209)
106 PLN02781 Probable caffeoyl-CoA 99.4 1.6E-11 3.6E-16 101.1 13.4 109 57-182 67-177 (234)
107 PRK00811 spermidine synthase; 99.4 4.7E-11 1E-15 101.1 16.0 142 56-218 74-237 (283)
108 PLN02672 methionine S-methyltr 99.3 4.8E-11 1E-15 115.4 17.8 148 25-198 85-293 (1082)
109 PRK05031 tRNA (uracil-5-)-meth 99.3 1.7E-11 3.7E-16 107.2 13.6 157 27-197 175-334 (362)
110 PF01135 PCMT: Protein-L-isoas 99.3 9E-12 2E-16 100.8 10.7 111 45-182 58-171 (209)
111 PHA03412 putative methyltransf 99.3 1.6E-11 3.4E-16 100.3 11.8 111 40-181 31-160 (241)
112 PF08704 GCD14: tRNA methyltra 99.3 3.4E-11 7.4E-16 99.5 14.0 128 56-205 38-169 (247)
113 TIGR00095 RNA methyltransferas 99.3 3.4E-11 7.3E-16 96.1 13.4 122 41-182 29-158 (189)
114 TIGR02143 trmA_only tRNA (urac 99.3 2.9E-11 6.2E-16 105.4 14.0 157 27-197 166-325 (353)
115 TIGR00438 rrmJ cell division p 99.3 4.2E-11 9.2E-16 95.3 13.7 122 56-204 30-167 (188)
116 TIGR03587 Pse_Me-ase pseudamin 99.3 3.1E-11 6.7E-16 97.5 12.6 97 56-184 41-143 (204)
117 TIGR02021 BchM-ChlM magnesium 99.3 3.2E-11 6.9E-16 98.3 12.5 99 57-182 54-157 (219)
118 KOG3191 Predicted N6-DNA-methy 99.3 4.3E-11 9.2E-16 93.0 12.4 136 59-220 44-207 (209)
119 KOG2904 Predicted methyltransf 99.3 1E-10 2.2E-15 96.3 14.9 138 41-196 127-298 (328)
120 smart00650 rADc Ribosomal RNA 99.3 4.5E-11 9.8E-16 93.6 12.4 99 56-181 11-111 (169)
121 PF03602 Cons_hypoth95: Conser 99.3 1.9E-11 4.1E-16 97.0 10.1 124 41-183 21-153 (183)
122 TIGR01934 MenG_MenH_UbiE ubiqu 99.3 6.8E-11 1.5E-15 95.8 13.2 102 57-184 38-144 (223)
123 PHA03411 putative methyltransf 99.3 3.9E-11 8.5E-16 100.0 11.9 130 40-199 46-205 (279)
124 PF02475 Met_10: Met-10+ like- 99.3 3.1E-11 6.6E-16 96.9 10.9 135 18-180 64-199 (200)
125 PF01596 Methyltransf_3: O-met 99.3 5E-11 1.1E-15 96.2 11.7 111 57-184 44-156 (205)
126 smart00138 MeTrc Methyltransfe 99.3 2.1E-11 4.5E-16 102.2 9.8 103 58-182 99-241 (264)
127 PLN02366 spermidine synthase 99.3 2.9E-10 6.4E-15 97.1 16.9 144 56-219 89-254 (308)
128 PF05958 tRNA_U5-meth_tr: tRNA 99.3 3.6E-11 7.8E-16 104.8 11.5 163 26-203 164-329 (352)
129 COG2263 Predicted RNA methylas 99.3 5E-11 1.1E-15 93.4 10.6 108 58-198 45-157 (198)
130 TIGR03840 TMPT_Se_Te thiopurin 99.3 9.2E-11 2E-15 95.3 12.7 117 57-198 33-178 (213)
131 PF07021 MetW: Methionine bios 99.3 7.5E-11 1.6E-15 93.1 11.2 104 50-182 5-108 (193)
132 COG2520 Predicted methyltransf 99.3 9.2E-11 2E-15 100.7 12.6 145 18-189 151-295 (341)
133 PRK13943 protein-L-isoaspartat 99.3 1.5E-10 3.3E-15 99.4 13.9 109 47-182 68-179 (322)
134 TIGR02716 C20_methyl_CrtF C-20 99.3 1.6E-10 3.5E-15 98.8 13.9 103 56-184 147-255 (306)
135 PRK06202 hypothetical protein; 99.2 5.8E-11 1.3E-15 97.6 10.5 99 57-184 59-167 (232)
136 COG0742 N6-adenine-specific me 99.2 2.2E-10 4.8E-15 90.3 13.0 125 39-183 20-154 (187)
137 PTZ00146 fibrillarin; Provisio 99.2 7.8E-10 1.7E-14 93.2 16.9 104 56-182 130-236 (293)
138 TIGR01983 UbiG ubiquinone bios 99.2 2.9E-10 6.3E-15 92.6 14.0 103 58-184 45-150 (224)
139 TIGR00417 speE spermidine synt 99.2 5.6E-10 1.2E-14 93.9 16.0 141 57-218 71-232 (270)
140 PLN02476 O-methyltransferase 99.2 1.8E-10 3.8E-15 96.8 12.8 109 57-182 117-227 (278)
141 PLN02336 phosphoethanolamine N 99.2 9E-11 2E-15 106.1 11.9 100 58-182 37-141 (475)
142 PF01170 UPF0020: Putative RNA 99.2 4.6E-10 9.9E-15 88.9 14.2 104 56-182 26-150 (179)
143 PRK05134 bifunctional 3-demeth 99.2 2E-10 4.4E-15 94.2 12.6 113 47-184 35-152 (233)
144 COG1041 Predicted DNA modifica 99.2 1.6E-10 3.5E-15 98.7 12.0 104 56-184 195-311 (347)
145 COG4122 Predicted O-methyltran 99.2 2.7E-10 5.8E-15 92.3 12.7 105 57-182 58-165 (219)
146 KOG4300 Predicted methyltransf 99.2 1.3E-10 2.7E-15 92.2 10.3 109 61-192 79-191 (252)
147 PF02390 Methyltransf_4: Putat 99.2 1.6E-10 3.4E-15 92.7 11.1 118 60-198 19-148 (195)
148 cd02440 AdoMet_MTases S-adenos 99.2 3.8E-10 8.2E-15 79.0 11.7 99 61-182 1-103 (107)
149 TIGR03438 probable methyltrans 99.2 6.9E-10 1.5E-14 94.8 15.4 121 56-195 61-189 (301)
150 PLN02585 magnesium protoporphy 99.2 8.6E-10 1.9E-14 94.6 15.4 110 46-183 131-249 (315)
151 PRK07580 Mg-protoporphyrin IX 99.2 4.5E-10 9.9E-15 91.7 13.2 106 47-179 51-162 (230)
152 PRK04338 N(2),N(2)-dimethylgua 99.2 4.9E-10 1.1E-14 98.5 13.2 99 59-182 58-157 (382)
153 TIGR02081 metW methionine bios 99.2 1.7E-10 3.7E-15 92.3 9.4 95 51-174 6-103 (194)
154 PRK11933 yebU rRNA (cytosine-C 99.2 7.4E-10 1.6E-14 99.5 14.3 119 56-197 111-258 (470)
155 PF10294 Methyltransf_16: Puta 99.2 9.5E-10 2.1E-14 86.6 12.9 144 36-198 15-172 (173)
156 PRK13255 thiopurine S-methyltr 99.2 9.8E-10 2.1E-14 89.6 13.4 119 56-199 35-182 (218)
157 PRK03612 spermidine synthase; 99.2 1.1E-09 2.5E-14 100.0 15.2 142 56-218 295-459 (521)
158 PRK14896 ksgA 16S ribosomal RN 99.2 8.7E-10 1.9E-14 92.2 13.2 109 33-170 3-112 (258)
159 PF03291 Pox_MCEL: mRNA cappin 99.1 4.8E-10 1E-14 96.7 11.3 109 58-184 62-187 (331)
160 TIGR00308 TRM1 tRNA(guanine-26 99.1 7E-10 1.5E-14 97.1 12.0 128 28-182 15-146 (374)
161 KOG3010 Methyltransferase [Gen 99.1 1.6E-10 3.5E-15 93.6 7.1 98 60-181 35-134 (261)
162 PTZ00338 dimethyladenosine tra 99.1 8.4E-10 1.8E-14 93.8 11.8 114 31-170 8-122 (294)
163 PRK01581 speE spermidine synth 99.1 2.2E-09 4.8E-14 92.8 14.3 134 28-182 119-267 (374)
164 PRK00274 ksgA 16S ribosomal RN 99.1 2E-09 4.4E-14 90.6 12.8 113 32-172 15-128 (272)
165 KOG2187 tRNA uracil-5-methyltr 99.1 1E-09 2.2E-14 97.4 11.2 155 24-199 348-506 (534)
166 COG0144 Sun tRNA and rRNA cyto 99.1 5.5E-09 1.2E-13 91.1 15.5 143 36-199 132-307 (355)
167 PLN02589 caffeoyl-CoA O-methyl 99.1 1.8E-09 4E-14 89.4 11.7 109 58-182 79-189 (247)
168 TIGR00755 ksgA dimethyladenosi 99.1 3.1E-09 6.8E-14 88.5 13.1 110 33-171 3-116 (253)
169 PRK11727 23S rRNA mA1618 methy 99.1 5.4E-09 1.2E-13 89.7 14.7 85 58-161 114-201 (321)
170 KOG1975 mRNA cap methyltransfe 99.1 7.3E-10 1.6E-14 93.2 8.7 128 52-198 111-249 (389)
171 COG1352 CheR Methylase of chem 99.0 1.2E-09 2.5E-14 91.4 9.2 150 29-181 64-239 (268)
172 KOG1499 Protein arginine N-met 99.0 1.5E-09 3.2E-14 92.5 9.6 100 58-181 60-165 (346)
173 KOG1541 Predicted protein carb 99.0 4.1E-09 8.9E-14 84.5 11.1 108 59-197 51-173 (270)
174 PF02384 N6_Mtase: N-6 DNA Met 99.0 2.4E-09 5.3E-14 91.6 10.7 140 40-199 26-204 (311)
175 PLN02823 spermine synthase 99.0 2E-08 4.4E-13 86.8 16.0 143 56-219 101-268 (336)
176 COG0220 Predicted S-adenosylme 99.0 3.5E-09 7.5E-14 86.6 10.7 104 60-184 50-165 (227)
177 COG2521 Predicted archaeal met 99.0 3.5E-09 7.6E-14 85.5 8.8 141 56-218 132-286 (287)
178 KOG2899 Predicted methyltransf 99.0 5.6E-09 1.2E-13 84.7 9.8 122 58-182 58-208 (288)
179 KOG2361 Predicted methyltransf 98.9 5.8E-09 1.3E-13 84.6 8.8 113 61-194 74-194 (264)
180 KOG1661 Protein-L-isoaspartate 98.9 1E-08 2.2E-13 81.6 9.7 114 44-182 68-192 (237)
181 PF05185 PRMT5: PRMT5 arginine 98.9 1.7E-08 3.8E-13 90.4 12.2 113 44-180 166-294 (448)
182 PF01739 CheR: CheR methyltran 98.9 2.1E-09 4.5E-14 86.2 5.3 122 59-182 32-174 (196)
183 KOG1500 Protein arginine N-met 98.9 1.6E-08 3.5E-13 85.7 9.8 99 58-181 177-280 (517)
184 PF05724 TPMT: Thiopurine S-me 98.9 3E-08 6.4E-13 80.9 11.1 135 48-204 26-187 (218)
185 PRK13256 thiopurine S-methyltr 98.9 6.2E-08 1.3E-12 79.2 12.7 124 57-200 42-190 (226)
186 COG0116 Predicted N6-adenine-s 98.8 5.1E-08 1.1E-12 84.6 12.6 105 56-183 189-344 (381)
187 PF01189 Nol1_Nop2_Fmu: NOL1/N 98.8 6.1E-08 1.3E-12 82.1 12.6 142 36-199 61-238 (283)
188 PRK00536 speE spermidine synth 98.8 1E-07 2.2E-12 79.6 13.5 135 56-218 70-215 (262)
189 TIGR00478 tly hemolysin TlyA f 98.8 6.7E-08 1.5E-12 79.2 11.6 49 48-96 63-113 (228)
190 PF06080 DUF938: Protein of un 98.8 7E-08 1.5E-12 77.2 11.1 123 46-184 12-142 (204)
191 PRK10611 chemotaxis methyltran 98.8 2.9E-08 6.3E-13 84.0 8.9 124 59-182 116-261 (287)
192 PF01564 Spermine_synth: Sperm 98.8 1.7E-07 3.8E-12 77.8 13.3 172 27-219 44-238 (246)
193 COG4976 Predicted methyltransf 98.8 3.1E-09 6.8E-14 85.6 2.6 111 44-182 110-224 (287)
194 KOG2915 tRNA(1-methyladenosine 98.8 1.4E-07 3E-12 77.9 11.9 126 56-204 103-232 (314)
195 KOG3420 Predicted RNA methylas 98.7 2.9E-08 6.2E-13 74.7 6.8 79 58-161 48-126 (185)
196 PRK00050 16S rRNA m(4)C1402 me 98.7 2.8E-07 6E-12 78.3 13.2 71 47-121 7-80 (296)
197 PRK01544 bifunctional N5-gluta 98.7 1.2E-07 2.6E-12 86.4 11.6 118 59-198 348-477 (506)
198 COG0421 SpeE Spermidine syntha 98.7 2.5E-07 5.3E-12 78.1 12.2 103 59-182 77-189 (282)
199 KOG0820 Ribosomal RNA adenine 98.7 1.9E-07 4.1E-12 77.2 10.2 92 44-161 43-135 (315)
200 PF05891 Methyltransf_PK: AdoM 98.7 9.9E-08 2.1E-12 76.9 8.4 99 59-182 56-160 (218)
201 COG0030 KsgA Dimethyladenosine 98.7 5.2E-07 1.1E-11 74.9 12.9 113 36-175 7-121 (259)
202 COG0293 FtsJ 23S rRNA methylas 98.7 4.7E-07 1E-11 72.5 12.1 133 48-207 33-183 (205)
203 PF09445 Methyltransf_15: RNA 98.7 5.1E-08 1.1E-12 75.7 6.2 113 60-196 1-132 (163)
204 PF05219 DREV: DREV methyltran 98.6 2.7E-07 5.8E-12 76.2 10.1 89 59-181 95-186 (265)
205 PLN02232 ubiquinone biosynthes 98.6 1.9E-07 4.2E-12 72.5 8.7 80 85-186 1-84 (160)
206 KOG1663 O-methyltransferase [S 98.6 7.7E-07 1.7E-11 72.0 12.1 108 58-182 73-182 (237)
207 TIGR02987 met_A_Alw26 type II 98.6 4E-07 8.8E-12 83.5 12.1 66 40-105 4-87 (524)
208 PRK11783 rlmL 23S rRNA m(2)G24 98.6 5.2E-07 1.1E-11 85.4 13.0 105 57-182 189-346 (702)
209 PF01728 FtsJ: FtsJ-like methy 98.6 3.2E-07 6.9E-12 72.5 9.5 135 48-207 9-163 (181)
210 PF00891 Methyltransf_2: O-met 98.6 5.4E-07 1.2E-11 74.4 10.8 94 57-184 99-200 (241)
211 PF12147 Methyltransf_20: Puta 98.5 4.7E-06 1E-10 69.8 14.9 113 59-191 136-257 (311)
212 PF00398 RrnaAD: Ribosomal RNA 98.5 2E-06 4.3E-11 72.1 12.2 118 34-175 5-123 (262)
213 PF02527 GidB: rRNA small subu 98.5 2.4E-06 5.3E-11 67.8 11.9 96 61-182 51-147 (184)
214 KOG2940 Predicted methyltransf 98.5 3.3E-07 7.1E-12 74.1 6.7 115 57-197 71-188 (325)
215 PF02005 TRM: N2,N2-dimethylgu 98.5 1.2E-06 2.5E-11 77.1 9.8 133 25-182 16-153 (377)
216 COG1189 Predicted rRNA methyla 98.4 1.9E-06 4.2E-11 70.1 9.5 143 6-181 30-176 (245)
217 KOG1122 tRNA and rRNA cytosine 98.4 5.7E-06 1.2E-10 72.3 12.7 120 56-197 239-387 (460)
218 PF08123 DOT1: Histone methyla 98.4 5.7E-06 1.2E-10 66.8 11.4 121 44-183 27-158 (205)
219 PF05148 Methyltransf_8: Hypot 98.4 4.3E-06 9.3E-11 67.0 10.4 130 47-218 62-197 (219)
220 KOG4589 Cell division protein 98.4 6.1E-06 1.3E-10 64.8 11.0 125 56-207 67-208 (232)
221 COG3963 Phospholipid N-methylt 98.4 5.5E-06 1.2E-10 63.9 10.1 117 44-184 32-157 (194)
222 PF05971 Methyltransf_10: Prot 98.3 2.8E-06 6.1E-11 72.0 8.8 86 59-162 103-190 (299)
223 PRK04148 hypothetical protein; 98.3 1.6E-05 3.5E-10 59.7 11.9 97 58-188 16-114 (134)
224 COG4076 Predicted RNA methylas 98.3 1.3E-06 2.7E-11 68.7 6.1 96 59-181 33-133 (252)
225 COG0357 GidB Predicted S-adeno 98.3 7.1E-06 1.5E-10 66.5 10.5 115 59-199 68-186 (215)
226 PF04816 DUF633: Family of unk 98.3 1.4E-05 3E-10 64.6 12.0 129 62-215 1-135 (205)
227 TIGR00006 S-adenosyl-methyltra 98.3 2.5E-05 5.4E-10 66.6 13.8 74 45-121 6-81 (305)
228 KOG3045 Predicted RNA methylas 98.2 1.7E-05 3.7E-10 65.3 10.9 107 57-206 179-290 (325)
229 COG1867 TRM1 N2,N2-dimethylgua 98.2 2.3E-05 4.9E-10 67.7 11.8 130 24-182 23-153 (380)
230 COG0286 HsdM Type I restrictio 98.2 2.5E-05 5.4E-10 71.1 12.4 141 40-198 166-346 (489)
231 PF03141 Methyltransf_29: Puta 98.2 2.8E-06 6.2E-11 75.8 5.9 122 36-187 93-223 (506)
232 PF06962 rRNA_methylase: Putat 98.2 3.5E-05 7.6E-10 58.2 10.8 108 83-214 1-121 (140)
233 COG3897 Predicted methyltransf 98.1 1.2E-05 2.5E-10 63.7 7.8 95 58-181 79-176 (218)
234 TIGR03439 methyl_EasF probable 98.1 0.00013 2.9E-09 62.7 14.7 123 56-196 74-210 (319)
235 COG4262 Predicted spermidine s 98.1 2.1E-05 4.5E-10 67.8 9.6 170 27-218 257-451 (508)
236 PF01234 NNMT_PNMT_TEMT: NNMT/ 98.1 3.4E-06 7.4E-11 70.2 4.7 141 58-204 56-236 (256)
237 KOG2198 tRNA cytosine-5-methyl 98.1 6.4E-05 1.4E-09 64.9 12.5 127 56-199 153-315 (375)
238 COG2384 Predicted SAM-dependen 98.1 0.00022 4.7E-09 57.6 14.2 127 48-199 6-134 (226)
239 KOG2671 Putative RNA methylase 98.0 1.2E-05 2.6E-10 68.7 6.6 105 55-181 205-352 (421)
240 PF13679 Methyltransf_32: Meth 98.0 0.00018 3.9E-09 54.6 11.4 49 57-105 24-77 (141)
241 PF03059 NAS: Nicotianamine sy 97.9 0.00012 2.5E-09 61.7 10.1 100 59-181 121-228 (276)
242 PF01269 Fibrillarin: Fibrilla 97.9 0.0005 1.1E-08 55.8 13.3 116 44-182 55-177 (229)
243 KOG2730 Methylase [General fun 97.8 4.7E-05 1E-09 61.4 6.4 83 58-160 94-176 (263)
244 TIGR01444 fkbM_fam methyltrans 97.8 9.1E-05 2E-09 55.8 7.4 55 61-117 1-56 (143)
245 PRK10742 putative methyltransf 97.8 9.5E-05 2.1E-09 61.1 7.9 84 56-161 84-176 (250)
246 KOG1269 SAM-dependent methyltr 97.8 6.8E-05 1.5E-09 65.5 7.1 104 56-182 108-214 (364)
247 COG0500 SmtA SAM-dependent met 97.8 0.00068 1.5E-08 49.6 11.7 99 62-185 52-157 (257)
248 PRK11760 putative 23S rRNA C24 97.7 0.00034 7.5E-09 60.3 10.6 87 57-176 210-296 (357)
249 PF01795 Methyltransf_5: MraW 97.7 0.00029 6.2E-09 60.2 9.2 72 47-121 8-81 (310)
250 KOG3178 Hydroxyindole-O-methyl 97.7 0.00031 6.7E-09 60.4 9.1 93 60-184 179-276 (342)
251 COG0275 Predicted S-adenosylme 97.6 0.0027 5.8E-08 53.8 14.2 75 44-121 8-85 (314)
252 PF13578 Methyltransf_24: Meth 97.6 4.7E-05 1E-09 54.6 3.3 99 63-183 1-105 (106)
253 KOG1331 Predicted methyltransf 97.6 6.9E-05 1.5E-09 62.6 4.6 114 37-184 25-144 (293)
254 KOG1709 Guanidinoacetate methy 97.6 0.00071 1.5E-08 54.6 10.1 104 56-182 99-205 (271)
255 PF01555 N6_N4_Mtase: DNA meth 97.6 0.00026 5.6E-09 57.1 7.2 54 45-99 178-231 (231)
256 PRK11524 putative methyltransf 97.6 0.00028 6.2E-09 59.8 7.5 56 46-102 196-251 (284)
257 PF09243 Rsm22: Mitochondrial 97.5 0.0017 3.7E-08 54.8 11.1 116 58-199 33-155 (274)
258 KOG4058 Uncharacterized conser 97.4 0.0011 2.4E-08 50.4 8.4 115 59-199 73-187 (199)
259 PF07942 N2227: N2227-like pro 97.4 0.0029 6.2E-08 53.2 11.8 135 47-183 39-202 (270)
260 COG3129 Predicted SAM-dependen 97.4 0.00062 1.3E-08 55.5 7.4 104 40-161 56-165 (292)
261 PF11968 DUF3321: Putative met 97.4 0.0022 4.8E-08 51.9 10.0 138 43-218 30-192 (219)
262 KOG3115 Methyltransferase-like 97.4 0.00096 2.1E-08 53.3 7.8 47 59-105 61-108 (249)
263 PRK13699 putative methylase; P 97.4 0.0008 1.7E-08 55.2 7.7 57 46-103 151-207 (227)
264 COG1889 NOP1 Fibrillarin-like 97.4 0.0061 1.3E-07 48.8 12.1 115 44-181 58-178 (231)
265 PF01861 DUF43: Protein of unk 97.3 0.022 4.8E-07 46.9 15.5 98 58-179 44-144 (243)
266 KOG2352 Predicted spermine/spe 97.3 0.0024 5.1E-08 57.3 10.5 105 55-184 44-162 (482)
267 PF04989 CmcI: Cephalosporin h 97.3 0.004 8.7E-08 50.1 10.3 107 58-181 32-145 (206)
268 PHA01634 hypothetical protein 97.3 0.0017 3.6E-08 48.2 7.3 49 58-106 28-76 (156)
269 KOG3201 Uncharacterized conser 97.2 0.00054 1.2E-08 52.9 4.7 122 58-198 29-156 (201)
270 KOG1099 SAM-dependent methyltr 97.1 0.0025 5.3E-08 52.0 7.8 122 57-205 40-185 (294)
271 KOG3987 Uncharacterized conser 97.1 0.00013 2.7E-09 58.5 0.3 89 59-181 113-205 (288)
272 KOG1501 Arginine N-methyltrans 97.0 0.0015 3.4E-08 57.7 6.1 60 61-121 69-128 (636)
273 COG1063 Tdh Threonine dehydrog 96.9 0.0033 7E-08 54.9 7.4 106 57-188 167-274 (350)
274 KOG1227 Putative methyltransfe 96.9 0.0005 1.1E-08 57.9 2.0 97 57-178 193-290 (351)
275 COG1064 AdhP Zn-dependent alco 96.9 0.008 1.7E-07 52.1 9.2 98 56-186 164-262 (339)
276 KOG1253 tRNA methyltransferase 96.9 0.00094 2E-08 59.8 3.5 104 59-182 110-215 (525)
277 PF11599 AviRa: RRNA methyltra 96.8 0.0035 7.5E-08 50.6 6.1 59 45-103 33-99 (246)
278 KOG1562 Spermidine synthase [A 96.8 0.01 2.2E-07 50.1 9.0 108 56-183 119-236 (337)
279 PF04672 Methyltransf_19: S-ad 96.8 0.04 8.7E-07 46.2 12.4 114 60-187 70-194 (267)
280 KOG0024 Sorbitol dehydrogenase 96.8 0.0086 1.9E-07 51.2 8.3 106 56-184 167-274 (354)
281 TIGR00497 hsdM type I restrict 96.7 0.023 5.1E-07 52.0 11.8 123 39-181 194-353 (501)
282 cd00315 Cyt_C5_DNA_methylase C 96.7 0.0057 1.2E-07 51.6 7.1 72 61-161 2-74 (275)
283 PF03141 Methyltransf_29: Puta 96.5 0.0027 5.8E-08 57.2 3.8 93 61-182 368-466 (506)
284 PF05711 TylF: Macrocin-O-meth 96.4 0.069 1.5E-06 44.4 11.4 139 60-218 76-247 (248)
285 PF07091 FmrO: Ribosomal RNA m 96.4 0.024 5.3E-07 46.9 8.5 81 56-162 103-184 (251)
286 KOG2078 tRNA modification enzy 96.3 0.0032 6.9E-08 55.5 2.9 69 52-121 243-311 (495)
287 KOG2793 Putative N2,N2-dimethy 96.1 0.061 1.3E-06 44.6 9.6 116 59-196 87-213 (248)
288 PF04445 SAM_MT: Putative SAM- 96.0 0.025 5.5E-07 46.5 6.6 83 57-161 72-163 (234)
289 COG4798 Predicted methyltransf 96.0 0.025 5.4E-07 45.1 6.3 34 56-89 46-81 (238)
290 PF00145 DNA_methylase: C-5 cy 95.9 0.061 1.3E-06 45.8 9.2 72 61-161 2-73 (335)
291 KOG1596 Fibrillarin and relate 95.9 0.052 1.1E-06 44.7 7.8 100 56-182 154-260 (317)
292 KOG2798 Putative trehalase [Ca 95.6 0.09 1.9E-06 45.0 8.5 136 46-183 132-296 (369)
293 PRK09880 L-idonate 5-dehydroge 95.5 0.12 2.6E-06 44.6 9.4 99 56-184 167-267 (343)
294 cd08237 ribitol-5-phosphate_DH 95.5 0.12 2.7E-06 44.6 9.4 94 56-184 161-257 (341)
295 PRK09424 pntA NAD(P) transhydr 95.1 0.24 5.2E-06 45.5 10.3 116 58-184 164-286 (509)
296 cd08283 FDH_like_1 Glutathione 95.0 0.084 1.8E-06 46.5 7.0 106 56-184 182-307 (386)
297 KOG0822 Protein kinase inhibit 94.6 0.15 3.3E-06 46.5 7.6 114 44-181 348-476 (649)
298 TIGR01202 bchC 2-desacetyl-2-h 94.5 0.38 8.2E-06 40.9 9.7 89 57-185 143-233 (308)
299 KOG1098 Putative SAM-dependent 94.4 0.11 2.3E-06 48.3 6.2 122 56-204 42-179 (780)
300 COG1568 Predicted methyltransf 94.4 0.41 8.8E-06 40.4 9.1 101 58-182 152-259 (354)
301 TIGR02822 adh_fam_2 zinc-bindi 94.3 0.43 9.2E-06 41.1 9.7 92 56-184 163-255 (329)
302 COG0270 Dcm Site-specific DNA 94.3 0.2 4.4E-06 43.3 7.6 114 59-199 3-138 (328)
303 COG5459 Predicted rRNA methyla 94.3 0.24 5.2E-06 43.1 7.7 119 59-198 114-240 (484)
304 PF00107 ADH_zinc_N: Zinc-bind 94.2 0.042 9.2E-07 40.2 2.9 92 68-186 1-92 (130)
305 KOG2912 Predicted DNA methylas 94.1 0.15 3.2E-06 43.8 5.9 98 44-160 85-189 (419)
306 TIGR00675 dcm DNA-methyltransf 93.9 0.14 3E-06 44.1 5.7 40 62-101 1-40 (315)
307 TIGR03451 mycoS_dep_FDH mycoth 93.8 0.21 4.5E-06 43.4 6.7 103 56-185 174-278 (358)
308 PF07757 AdoMet_MTase: Predict 93.8 0.057 1.2E-06 38.9 2.6 32 58-90 58-89 (112)
309 COG0863 DNA modification methy 93.5 0.33 7.1E-06 40.9 7.4 57 46-103 210-266 (302)
310 PRK11524 putative methyltransf 93.5 0.1 2.2E-06 44.3 4.1 37 146-182 24-79 (284)
311 cd00401 AdoHcyase S-adenosyl-L 93.4 0.49 1.1E-05 42.3 8.5 90 57-185 200-291 (413)
312 PRK10458 DNA cytosine methylas 93.3 0.59 1.3E-05 42.5 9.0 42 60-101 89-130 (467)
313 cd08230 glucose_DH Glucose deh 93.3 0.72 1.6E-05 39.9 9.3 97 57-185 171-271 (355)
314 PRK13699 putative methylase; P 93.3 0.18 3.9E-06 41.4 5.2 52 146-198 17-86 (227)
315 cd08281 liver_ADH_like1 Zinc-d 93.1 0.29 6.2E-06 42.8 6.5 102 56-185 189-292 (371)
316 COG1062 AdhC Zn-dependent alco 92.9 0.32 7E-06 42.1 6.3 103 56-185 183-287 (366)
317 KOG2651 rRNA adenine N-6-methy 92.9 0.38 8.3E-06 42.3 6.7 53 47-99 140-194 (476)
318 cd05188 MDR Medium chain reduc 92.8 0.47 1E-05 38.6 7.1 100 57-184 133-233 (271)
319 cd08254 hydroxyacyl_CoA_DH 6-h 92.8 0.41 8.8E-06 40.7 7.0 101 56-184 163-264 (338)
320 cd08239 THR_DH_like L-threonin 92.8 0.45 9.8E-06 40.7 7.2 101 56-184 161-263 (339)
321 PF06859 Bin3: Bicoid-interact 92.8 0.1 2.2E-06 37.7 2.6 34 149-182 1-43 (110)
322 PF02254 TrkA_N: TrkA-N domain 92.7 1.8 3.8E-05 30.9 9.3 89 67-182 4-95 (116)
323 TIGR03366 HpnZ_proposed putati 92.6 0.43 9.4E-06 39.9 6.7 99 57-184 119-219 (280)
324 KOG1201 Hydroxysteroid 17-beta 92.5 1.6 3.4E-05 37.2 9.8 85 58-159 37-124 (300)
325 PRK10309 galactitol-1-phosphat 92.4 0.56 1.2E-05 40.4 7.3 102 56-185 158-262 (347)
326 COG1565 Uncharacterized conser 91.9 0.92 2E-05 39.7 7.8 57 48-104 66-132 (370)
327 PF02636 Methyltransf_28: Puta 91.9 1.1 2.4E-05 37.1 8.2 56 48-103 6-72 (252)
328 TIGR00561 pntA NAD(P) transhyd 91.6 0.85 1.9E-05 41.9 7.7 42 58-99 163-205 (511)
329 KOG2352 Predicted spermine/spe 91.4 0.61 1.3E-05 42.2 6.5 126 58-200 295-435 (482)
330 PLN02740 Alcohol dehydrogenase 91.4 1.9 4E-05 37.9 9.6 103 56-185 196-302 (381)
331 PF10354 DUF2431: Domain of un 91.3 3.9 8.6E-05 31.8 10.3 37 146-182 72-124 (166)
332 COG4301 Uncharacterized conser 91.3 7.9 0.00017 32.4 12.3 116 58-194 78-204 (321)
333 PLN03154 putative allyl alcoho 91.2 0.9 2E-05 39.4 7.3 102 56-184 156-259 (348)
334 KOG0022 Alcohol dehydrogenase, 91.0 0.51 1.1E-05 40.6 5.3 46 55-100 189-236 (375)
335 PF10237 N6-adenineMlase: Prob 90.7 5.6 0.00012 30.9 10.5 109 44-182 11-122 (162)
336 PRK01747 mnmC bifunctional tRN 90.7 0.96 2.1E-05 42.9 7.5 35 148-182 165-205 (662)
337 PLN02827 Alcohol dehydrogenase 90.5 2.3 5E-05 37.3 9.3 103 56-185 191-297 (378)
338 COG1748 LYS9 Saccharopine dehy 90.5 1.4 3.1E-05 39.0 7.9 56 60-121 2-59 (389)
339 PF02086 MethyltransfD12: D12 90.5 0.49 1.1E-05 39.0 4.8 50 51-101 11-62 (260)
340 PRK15001 SAM-dependent 23S rib 90.4 12 0.00026 33.1 13.8 110 44-184 31-143 (378)
341 TIGR03201 dearomat_had 6-hydro 90.4 1.1 2.5E-05 38.6 7.2 44 56-99 164-208 (349)
342 KOG2920 Predicted methyltransf 90.4 0.23 4.9E-06 41.9 2.6 40 56-95 114-153 (282)
343 PF08484 Methyltransf_14: C-me 90.3 0.73 1.6E-05 35.7 5.3 111 36-181 45-157 (160)
344 PF03492 Methyltransf_7: SAM d 90.3 4.3 9.4E-05 35.3 10.6 20 58-77 16-35 (334)
345 cd08285 NADP_ADH NADP(H)-depen 90.1 1.2 2.5E-05 38.4 7.0 103 56-185 164-268 (351)
346 PF02558 ApbA: Ketopantoate re 90.1 1.2 2.7E-05 33.4 6.4 51 146-196 64-114 (151)
347 TIGR02825 B4_12hDH leukotriene 89.9 1.4 3.1E-05 37.4 7.3 100 56-183 136-237 (325)
348 PF11899 DUF3419: Protein of u 89.8 0.92 2E-05 40.2 6.2 55 44-101 23-77 (380)
349 PRK05708 2-dehydropantoate 2-r 89.5 4 8.6E-05 34.9 9.7 114 60-197 3-118 (305)
350 PF03269 DUF268: Caenorhabditi 89.3 2.4 5.1E-05 33.0 7.2 93 59-182 2-110 (177)
351 TIGR02819 fdhA_non_GSH formald 89.0 1.5 3.3E-05 38.8 7.0 106 56-185 183-301 (393)
352 PLN02586 probable cinnamyl alc 88.9 2.1 4.6E-05 37.2 7.8 98 56-184 181-279 (360)
353 PRK06522 2-dehydropantoate 2-r 88.6 8.7 0.00019 32.2 11.2 108 61-196 2-113 (304)
354 KOG0821 Predicted ribosomal RN 88.4 3.3 7.2E-05 34.0 7.8 110 59-180 51-161 (326)
355 COG0287 TyrA Prephenate dehydr 87.8 2.8 6E-05 35.6 7.5 105 60-199 4-111 (279)
356 cd08238 sorbose_phosphate_red 87.8 4.3 9.4E-05 36.0 9.1 45 56-100 173-222 (410)
357 TIGR02818 adh_III_F_hyde S-(hy 87.6 1.9 4E-05 37.7 6.6 102 56-184 183-288 (368)
358 PF03686 UPF0146: Uncharacteri 87.3 8.8 0.00019 28.5 8.9 93 59-189 14-108 (127)
359 cd05278 FDH_like Formaldehyde 87.3 2.3 5E-05 36.3 6.9 101 56-183 165-267 (347)
360 KOG3924 Putative protein methy 87.3 4.6 9.9E-05 35.8 8.5 118 48-184 181-309 (419)
361 COG1893 ApbA Ketopantoate redu 87.1 10 0.00022 32.6 10.6 115 60-199 1-117 (307)
362 cd08232 idonate-5-DH L-idonate 86.5 4.2 9.2E-05 34.6 8.1 96 58-183 165-262 (339)
363 PRK11064 wecC UDP-N-acetyl-D-m 86.5 16 0.00034 32.8 11.9 119 60-198 4-135 (415)
364 PRK12921 2-dehydropantoate 2-r 86.4 8.7 0.00019 32.4 9.9 49 148-196 67-115 (305)
365 COG0604 Qor NADPH:quinone redu 86.3 3.3 7.2E-05 35.8 7.3 102 56-185 140-243 (326)
366 PRK06249 2-dehydropantoate 2-r 86.2 7 0.00015 33.4 9.3 50 147-196 70-119 (313)
367 cd08300 alcohol_DH_class_III c 86.1 2.4 5.3E-05 36.9 6.5 103 56-185 184-290 (368)
368 cd08255 2-desacetyl-2-hydroxye 86.0 6.2 0.00013 32.5 8.7 95 56-184 95-191 (277)
369 PRK03659 glutathione-regulated 86.0 5.9 0.00013 37.3 9.3 93 60-181 401-496 (601)
370 cd08234 threonine_DH_like L-th 85.5 3 6.6E-05 35.3 6.7 99 56-183 157-257 (334)
371 PF07279 DUF1442: Protein of u 85.4 13 0.00028 30.3 9.7 99 59-182 42-147 (218)
372 cd08277 liver_alcohol_DH_like 85.3 3.7 7.9E-05 35.7 7.2 103 56-185 182-288 (365)
373 cd08233 butanediol_DH_like (2R 85.1 3.4 7.3E-05 35.5 6.8 102 56-184 170-273 (351)
374 PF02737 3HCDH_N: 3-hydroxyacy 84.8 9.7 0.00021 29.8 8.8 93 62-182 2-113 (180)
375 cd08261 Zn_ADH7 Alcohol dehydr 84.8 3.4 7.4E-05 35.2 6.7 101 56-183 157-258 (337)
376 COG2933 Predicted SAM-dependen 84.7 10 0.00023 32.0 9.0 87 56-176 209-296 (358)
377 PRK07502 cyclohexadienyl dehyd 84.6 6.1 0.00013 33.6 8.1 89 60-181 7-98 (307)
378 cd08242 MDR_like Medium chain 84.4 13 0.00027 31.3 10.0 91 56-182 153-244 (319)
379 PF03721 UDPG_MGDP_dh_N: UDP-g 84.1 10 0.00022 30.0 8.6 47 149-195 76-133 (185)
380 cd08301 alcohol_DH_plants Plan 84.0 7.5 0.00016 33.7 8.6 103 56-185 185-291 (369)
381 cd08295 double_bond_reductase_ 83.9 4.4 9.6E-05 34.6 7.1 101 56-183 149-251 (338)
382 PLN02514 cinnamyl-alcohol dehy 83.5 10 0.00022 32.8 9.3 97 57-184 179-276 (357)
383 PF00106 adh_short: short chai 83.5 11 0.00025 28.1 8.5 84 61-159 2-90 (167)
384 PF02153 PDH: Prephenate dehyd 83.1 4.8 0.0001 33.5 6.7 75 73-181 2-77 (258)
385 cd08286 FDH_like_ADH2 formalde 83.1 4.5 9.8E-05 34.5 6.8 101 56-183 164-266 (345)
386 PRK05808 3-hydroxybutyryl-CoA 82.4 24 0.00052 29.5 10.8 107 61-196 5-130 (282)
387 cd08293 PTGR2 Prostaglandin re 82.3 12 0.00026 31.8 9.1 100 56-183 150-254 (345)
388 PF01555 N6_N4_Mtase: DNA meth 81.9 1.5 3.2E-05 34.9 3.1 21 162-182 35-55 (231)
389 PRK10669 putative cation:proto 81.8 12 0.00026 34.8 9.4 95 60-182 418-514 (558)
390 PRK03562 glutathione-regulated 81.6 15 0.00032 34.8 10.1 94 60-181 401-496 (621)
391 PRK05476 S-adenosyl-L-homocyst 81.6 6.7 0.00014 35.3 7.4 89 58-186 211-302 (425)
392 cd08294 leukotriene_B4_DH_like 81.5 4.7 0.0001 34.0 6.2 99 56-183 141-241 (329)
393 TIGR00936 ahcY adenosylhomocys 81.4 8.3 0.00018 34.5 7.8 100 57-195 193-296 (406)
394 cd05285 sorbitol_DH Sorbitol d 81.4 6 0.00013 33.9 6.9 104 56-183 160-265 (343)
395 PRK07904 short chain dehydroge 81.1 9.9 0.00021 31.2 7.9 62 57-120 6-71 (253)
396 cd08298 CAD2 Cinnamyl alcohol 80.7 24 0.00051 29.7 10.3 91 56-183 165-256 (329)
397 PLN02494 adenosylhomocysteinas 80.7 6.1 0.00013 36.0 6.8 89 57-185 252-343 (477)
398 cd08231 MDR_TM0436_like Hypoth 80.7 7.6 0.00016 33.5 7.4 103 57-183 176-280 (361)
399 cd08236 sugar_DH NAD(P)-depend 80.6 6.5 0.00014 33.5 6.9 100 56-183 157-258 (343)
400 PF03514 GRAS: GRAS domain fam 80.6 21 0.00045 31.5 10.1 61 40-102 94-166 (374)
401 cd08278 benzyl_alcohol_DH Benz 80.4 6.5 0.00014 34.1 6.9 101 56-184 184-286 (365)
402 PRK06035 3-hydroxyacyl-CoA deh 80.3 12 0.00026 31.5 8.3 120 60-196 4-133 (291)
403 COG5379 BtaA S-adenosylmethion 80.2 4.8 0.0001 34.5 5.6 44 58-102 63-106 (414)
404 PF05206 TRM13: Methyltransfer 80.2 4.5 9.7E-05 33.9 5.4 39 56-94 16-60 (259)
405 PRK07417 arogenate dehydrogena 79.9 12 0.00025 31.5 8.0 84 61-179 2-87 (279)
406 COG0686 Ald Alanine dehydrogen 79.8 8.8 0.00019 33.2 7.1 93 61-181 170-266 (371)
407 PLN02178 cinnamyl-alcohol dehy 79.8 14 0.00031 32.3 8.8 97 57-185 177-275 (375)
408 cd08245 CAD Cinnamyl alcohol d 79.7 13 0.00028 31.4 8.4 96 56-183 160-256 (330)
409 cd08265 Zn_ADH3 Alcohol dehydr 79.7 5.4 0.00012 34.9 6.2 103 56-183 201-307 (384)
410 PF07669 Eco57I: Eco57I restri 79.7 5.8 0.00013 28.3 5.3 49 149-199 2-72 (106)
411 PF05050 Methyltransf_21: Meth 79.2 7.1 0.00015 29.2 6.0 41 64-104 1-48 (167)
412 COG0677 WecC UDP-N-acetyl-D-ma 78.6 30 0.00064 31.0 10.1 122 60-199 10-145 (436)
413 cd08240 6_hydroxyhexanoate_dh_ 78.5 8.8 0.00019 32.9 7.0 99 57-183 174-274 (350)
414 cd05281 TDH Threonine dehydrog 78.4 11 0.00024 32.2 7.6 100 56-183 161-262 (341)
415 PRK08293 3-hydroxybutyryl-CoA 78.2 15 0.00032 31.0 8.1 41 60-101 4-46 (287)
416 COG3510 CmcI Cephalosporin hyd 77.6 17 0.00037 29.3 7.6 103 58-182 69-179 (237)
417 PRK15057 UDP-glucose 6-dehydro 77.3 32 0.00069 30.5 10.3 50 148-198 72-133 (388)
418 cd08296 CAD_like Cinnamyl alco 76.9 14 0.00031 31.4 7.8 98 56-183 161-259 (333)
419 PRK05854 short chain dehydroge 76.8 19 0.00042 30.6 8.6 62 58-121 13-77 (313)
420 cd05279 Zn_ADH1 Liver alcohol 76.7 11 0.00023 32.8 7.1 102 56-183 181-285 (365)
421 KOG2539 Mitochondrial/chloropl 76.6 18 0.00039 32.9 8.3 106 59-185 201-317 (491)
422 PRK07530 3-hydroxybutyryl-CoA 76.6 29 0.00063 29.2 9.5 94 60-181 5-117 (292)
423 KOG0023 Alcohol dehydrogenase, 76.4 18 0.00038 31.5 7.9 101 56-185 179-281 (360)
424 PF01210 NAD_Gly3P_dh_N: NAD-d 76.3 13 0.00029 28.2 6.8 99 62-182 2-102 (157)
425 PRK10083 putative oxidoreducta 76.0 15 0.00032 31.2 7.7 100 56-184 158-260 (339)
426 TIGR00027 mthyl_TIGR00027 meth 75.9 45 0.00098 27.8 10.9 125 44-184 66-198 (260)
427 KOG1197 Predicted quinone oxid 75.8 16 0.00035 30.8 7.3 99 56-182 144-244 (336)
428 TIGR02356 adenyl_thiF thiazole 75.5 21 0.00044 28.5 7.9 33 58-90 20-54 (202)
429 cd05284 arabinose_DH_like D-ar 75.1 20 0.00043 30.4 8.2 100 56-183 165-266 (340)
430 PRK06701 short chain dehydroge 75.1 40 0.00087 28.2 10.0 59 58-120 45-107 (290)
431 PRK07576 short chain dehydroge 75.1 44 0.00096 27.3 10.9 57 58-119 8-68 (264)
432 PRK08507 prephenate dehydrogen 75.0 16 0.00034 30.6 7.4 84 61-180 2-88 (275)
433 PRK09260 3-hydroxybutyryl-CoA 74.8 17 0.00038 30.5 7.7 40 61-101 3-44 (288)
434 cd08263 Zn_ADH10 Alcohol dehyd 74.6 11 0.00023 32.7 6.5 100 57-183 186-287 (367)
435 PRK08324 short chain dehydroge 74.5 29 0.00063 33.1 9.9 57 58-120 421-481 (681)
436 TIGR00518 alaDH alanine dehydr 74.5 8.3 0.00018 34.0 5.8 40 59-99 167-208 (370)
437 PRK07066 3-hydroxybutyryl-CoA 74.0 35 0.00076 29.5 9.4 109 60-196 8-131 (321)
438 KOG2360 Proliferation-associat 73.8 11 0.00023 33.5 6.1 61 58-120 213-275 (413)
439 PRK06125 short chain dehydroge 73.7 29 0.00063 28.2 8.7 60 58-120 6-68 (259)
440 PRK08339 short chain dehydroge 73.7 26 0.00055 28.8 8.3 60 58-120 7-69 (263)
441 PRK05867 short chain dehydroge 73.3 21 0.00045 28.9 7.7 59 58-120 8-69 (253)
442 cd08291 ETR_like_1 2-enoyl thi 73.2 8.6 0.00019 32.6 5.5 98 58-183 142-242 (324)
443 cd08279 Zn_ADH_class_III Class 72.9 13 0.00029 32.1 6.7 100 56-182 180-281 (363)
444 TIGR00692 tdh L-threonine 3-de 72.8 12 0.00026 31.9 6.4 102 56-184 159-262 (340)
445 PRK15182 Vi polysaccharide bio 72.8 50 0.0011 29.7 10.5 46 148-193 75-131 (425)
446 PTZ00357 methyltransferase; Pr 72.7 16 0.00035 35.1 7.3 107 61-178 703-830 (1072)
447 COG4627 Uncharacterized protei 72.6 1.2 2.6E-05 34.5 0.0 37 146-182 44-85 (185)
448 cd05283 CAD1 Cinnamyl alcohol 72.3 21 0.00047 30.3 7.8 96 56-183 167-263 (337)
449 PRK05876 short chain dehydroge 72.1 27 0.00058 29.0 8.1 59 58-120 5-66 (275)
450 PRK05225 ketol-acid reductoiso 71.9 4.7 0.0001 36.6 3.6 36 147-182 95-130 (487)
451 PRK07109 short chain dehydroge 71.7 58 0.0013 28.0 10.4 59 58-120 7-68 (334)
452 PRK09496 trkA potassium transp 71.6 74 0.0016 28.3 12.1 54 58-120 230-286 (453)
453 KOG1205 Predicted dehydrogenas 71.6 34 0.00074 29.0 8.6 88 58-159 11-101 (282)
454 cd08235 iditol_2_DH_like L-idi 70.7 12 0.00026 31.8 5.9 100 56-182 163-264 (343)
455 PRK08306 dipicolinate synthase 70.2 30 0.00066 29.4 8.1 87 58-181 151-239 (296)
456 PRK05396 tdh L-threonine 3-deh 69.3 17 0.00037 30.9 6.5 101 57-184 162-264 (341)
457 cd08256 Zn_ADH2 Alcohol dehydr 69.2 15 0.00032 31.5 6.1 101 56-183 172-274 (350)
458 PRK12481 2-deoxy-D-gluconate 3 69.2 58 0.0013 26.4 9.4 58 58-121 7-67 (251)
459 PRK05786 fabG 3-ketoacyl-(acyl 69.2 56 0.0012 25.9 11.3 57 58-120 4-64 (238)
460 KOG0725 Reductases with broad 68.9 29 0.00063 29.1 7.6 89 58-158 7-98 (270)
461 PLN02353 probable UDP-glucose 68.8 41 0.00088 30.8 9.0 121 60-198 2-143 (473)
462 PLN02545 3-hydroxybutyryl-CoA 68.8 48 0.001 27.9 9.1 41 60-101 5-47 (295)
463 PRK07478 short chain dehydroge 68.5 39 0.00083 27.3 8.3 59 58-120 5-66 (254)
464 PRK12475 thiamine/molybdopteri 68.4 33 0.00072 29.8 8.1 34 58-91 23-58 (338)
465 cd08287 FDH_like_ADH3 formalde 68.4 23 0.0005 30.1 7.2 101 56-183 166-268 (345)
466 cd08241 QOR1 Quinone oxidoredu 68.2 20 0.00043 29.6 6.6 100 56-183 137-238 (323)
467 cd08260 Zn_ADH6 Alcohol dehydr 68.0 21 0.00045 30.4 6.8 101 56-184 163-265 (345)
468 PRK08229 2-dehydropantoate 2-r 67.9 65 0.0014 27.6 9.9 51 147-197 71-121 (341)
469 PRK06940 short chain dehydroge 67.9 69 0.0015 26.5 10.5 82 60-159 3-86 (275)
470 PRK08862 short chain dehydroge 67.6 29 0.00062 28.0 7.2 47 58-105 4-53 (227)
471 PRK06139 short chain dehydroge 67.5 32 0.00069 29.7 7.8 59 58-120 6-67 (330)
472 TIGR03026 NDP-sugDHase nucleot 67.4 91 0.002 27.7 11.0 49 148-196 75-134 (411)
473 PRK07062 short chain dehydroge 67.3 41 0.00088 27.4 8.2 61 58-120 7-70 (265)
474 cd08282 PFDH_like Pseudomonas 67.0 65 0.0014 27.9 9.8 103 56-184 174-286 (375)
475 PRK09496 trkA potassium transp 67.0 60 0.0013 28.9 9.8 93 61-181 2-97 (453)
476 cd08274 MDR9 Medium chain dehy 66.9 22 0.00047 30.3 6.7 96 56-182 175-272 (350)
477 PRK09072 short chain dehydroge 66.8 68 0.0015 26.0 10.3 58 58-120 4-64 (263)
478 PRK12491 pyrroline-5-carboxyla 66.7 62 0.0014 27.1 9.2 102 61-197 4-110 (272)
479 cd01065 NAD_bind_Shikimate_DH 66.7 40 0.00086 25.0 7.4 43 58-100 18-62 (155)
480 PRK00094 gpsA NAD(P)H-dependen 66.6 43 0.00093 28.3 8.4 116 61-198 3-122 (325)
481 cd08266 Zn_ADH_like1 Alcohol d 66.5 16 0.00034 30.6 5.7 99 56-182 164-264 (342)
482 PRK03369 murD UDP-N-acetylmura 66.3 30 0.00065 31.6 7.8 39 57-95 10-49 (488)
483 PRK07688 thiamine/molybdopteri 66.0 39 0.00084 29.4 8.0 33 58-90 23-57 (339)
484 PRK08265 short chain dehydroge 65.8 72 0.0016 26.0 10.2 56 58-120 5-63 (261)
485 KOG2015 NEDD8-activating compl 65.6 65 0.0014 28.2 8.9 33 59-91 40-74 (422)
486 PRK09422 ethanol-active dehydr 65.5 26 0.00057 29.6 6.9 100 56-183 160-261 (338)
487 cd08269 Zn_ADH9 Alcohol dehydr 65.4 31 0.00067 28.6 7.2 101 56-183 127-229 (312)
488 PRK07102 short chain dehydroge 65.4 41 0.00089 26.9 7.8 58 60-121 2-63 (243)
489 PF03446 NAD_binding_2: NAD bi 65.2 41 0.00089 25.6 7.3 102 61-198 3-110 (163)
490 PRK07097 gluconate 5-dehydroge 64.9 47 0.001 27.1 8.1 59 58-120 9-70 (265)
491 PTZ00075 Adenosylhomocysteinas 64.9 32 0.0007 31.5 7.5 88 58-185 253-343 (476)
492 cd05213 NAD_bind_Glutamyl_tRNA 64.9 35 0.00077 29.1 7.6 38 58-95 177-216 (311)
493 cd08284 FDH_like_2 Glutathione 64.7 86 0.0019 26.5 10.2 100 56-183 165-266 (344)
494 PRK14620 NAD(P)H-dependent gly 64.5 73 0.0016 27.2 9.5 95 61-181 2-104 (326)
495 PRK08589 short chain dehydroge 64.4 44 0.00095 27.5 7.9 58 58-120 5-65 (272)
496 PRK08945 putative oxoacyl-(acy 64.0 40 0.00087 27.1 7.5 57 58-118 11-71 (247)
497 cd08243 quinone_oxidoreductase 64.0 82 0.0018 26.0 9.6 97 56-183 140-238 (320)
498 COG0240 GpsA Glycerol-3-phosph 63.2 72 0.0016 27.8 9.0 114 61-200 3-124 (329)
499 cd00423 Pterin_binding Pterin 62.8 11 0.00023 31.4 3.9 42 29-70 7-48 (258)
500 PF00809 Pterin_bind: Pterin b 62.4 13 0.00029 29.9 4.3 41 29-69 2-42 (210)
No 1
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=100.00 E-value=2.6e-34 Score=242.31 Aligned_cols=192 Identities=41% Similarity=0.667 Sum_probs=163.4
Q ss_pred CCccceEeccceeeeecCCCCCC-CcceeEEeCCCcccccCCcchhHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHh
Q 047371 1 ESFHPVEVTKGLWIVPEWSTPPD-VQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKF 79 (222)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~ 79 (222)
++|+|++++++++++|+|.+.+. .+...+.++|+++||+|+|+++++++++|.++..++++|||+|||+|.+++.+++.
T Consensus 103 ~~~~P~~vg~~~~I~P~w~~~~~~~~~~~I~idPg~AFGTG~H~TT~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~kl 182 (295)
T PF06325_consen 103 KYFKPIRVGDRLVIVPSWEEYPEPPDEIVIEIDPGMAFGTGHHPTTRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKL 182 (295)
T ss_dssp HH---EEECTTEEEEETT----SSTTSEEEEESTTSSS-SSHCHHHHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHT
T ss_pred hcCccEEECCcEEEECCCcccCCCCCcEEEEECCCCcccCCCCHHHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHc
Confidence 37999999999999999999965 67889999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccc
Q 047371 80 GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILL 159 (222)
Q Consensus 80 ~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~ 159 (222)
|..+|+|+|++|.+++.|++|+..|++.. ++.+. ..... ...+||+|++|...
T Consensus 183 GA~~v~a~DiDp~Av~~a~~N~~~N~~~~-~~~v~--~~~~~------------------------~~~~~dlvvANI~~ 235 (295)
T PF06325_consen 183 GAKKVVAIDIDPLAVEAARENAELNGVED-RIEVS--LSEDL------------------------VEGKFDLVVANILA 235 (295)
T ss_dssp TBSEEEEEESSCHHHHHHHHHHHHTT-TT-CEEES--CTSCT------------------------CCS-EEEEEEES-H
T ss_pred CCCeEEEecCCHHHHHHHHHHHHHcCCCe-eEEEE--Eeccc------------------------ccccCCEEEECCCH
Confidence 99999999999999999999999999973 55442 11111 35789999999998
Q ss_pred ccHHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHhhhhcceecccCCceEeecccC
Q 047371 160 NPLPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSEFLEDILVSEKDDWRCVSGTKF 219 (222)
Q Consensus 160 ~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~k~ 219 (222)
+.+..++..+.++|+|||+++++++..++..++.+.+.++|...+....++|.++..+|+
T Consensus 236 ~vL~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~~~g~~~~~~~~~~~W~~l~~~Kk 295 (295)
T PF06325_consen 236 DVLLELAPDIASLLKPGGYLILSGILEEQEDEVIEAYKQGFELVEEREEGEWVALVFKKK 295 (295)
T ss_dssp HHHHHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHHHTTEEEEEEEEETTEEEEEEEE-
T ss_pred HHHHHHHHHHHHhhCCCCEEEEccccHHHHHHHHHHHHCCCEEEEEEEECCEEEEEEEeC
Confidence 888999999999999999999999999999999999988888899999999999999885
No 2
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.8e-34 Score=238.30 Aligned_cols=195 Identities=42% Similarity=0.678 Sum_probs=173.6
Q ss_pred CCccceEeccceeeeecCCCCCCC-cceeEEeCCCcccccCCcchhHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHh
Q 047371 1 ESFHPVEVTKGLWIVPEWSTPPDV-QATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKF 79 (222)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~ 79 (222)
++|+|++++.|.+++|+|.+.+.. ...+++++|+++||+|.|+++.+++++|.++.++|+++||+|||+|.+++.+++.
T Consensus 104 ~~~~P~rig~~f~I~Psw~~~~~~~~~~~i~lDPGlAFGTG~HpTT~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kL 183 (300)
T COG2264 104 KYFHPVRIGERFVIVPSWREYPEPSDELNIELDPGLAFGTGTHPTTSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKL 183 (300)
T ss_pred hcCCcEEeeeeEEECCCCccCCCCCCceEEEEccccccCCCCChhHHHHHHHHHHhhcCCCEEEEecCChhHHHHHHHHc
Confidence 579999999999999999988777 7899999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccc
Q 047371 80 GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILL 159 (222)
Q Consensus 80 ~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~ 159 (222)
|...++|+|++|-+++.|+.|+..|++.. .+.....+.... ...++||+|++|-.-
T Consensus 184 GA~~v~g~DiDp~AV~aa~eNa~~N~v~~-~~~~~~~~~~~~-----------------------~~~~~~DvIVANILA 239 (300)
T COG2264 184 GAKKVVGVDIDPQAVEAARENARLNGVEL-LVQAKGFLLLEV-----------------------PENGPFDVIVANILA 239 (300)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHcCCch-hhhcccccchhh-----------------------cccCcccEEEehhhH
Confidence 99999999999999999999999999862 122222211111 134689999999988
Q ss_pred ccHHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHh-hhhcceecccCCceEeecccC
Q 047371 160 NPLPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSE-FLEDILVSEKDDWRCVSGTKF 219 (222)
Q Consensus 160 ~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~w~~~~~~k~ 219 (222)
+.+..++..+.+.+||||+++++++..++.+.+.+.+.. +|...+....++|+++..+|.
T Consensus 240 ~vl~~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~~gf~v~~~~~~~eW~~i~~kr~ 300 (300)
T COG2264 240 EVLVELAPDIKRLLKPGGRLILSGILEDQAESVAEAYEQAGFEVVEVLEREEWVAIVGKRK 300 (300)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEeehHhHHHHHHHHHHhCCCeEeEEEecCCEEEEEEEcC
Confidence 888899999999999999999999999999999999955 699999999999999999874
No 3
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.96 E-value=1e-28 Score=209.32 Aligned_cols=187 Identities=40% Similarity=0.696 Sum_probs=163.6
Q ss_pred CCccceEeccceeeeecCCCCC-CCcceeEEeCCCcccccCCcchhHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHh
Q 047371 1 ESFHPVEVTKGLWIVPEWSTPP-DVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKF 79 (222)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~ 79 (222)
++|+|+.++++++++|+|.+.. ......+.++|+..|++|.|++++++++++..+..++++|||+|||+|.+++.+++.
T Consensus 101 ~~~~p~~~g~~~~i~p~w~~~~~~~~~~~i~ldpg~aFgtG~h~tt~l~l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~ 180 (288)
T TIGR00406 101 DNFHPVQFGKRFWICPSWRDVPSDEDALIIMLDPGLAFGTGTHPTTSLCLEWLEDLDLKDKNVIDVGCGSGILSIAALKL 180 (288)
T ss_pred HhCCCEEEcCeEEEECCCcCCCCCCCcEEEEECCCCcccCCCCHHHHHHHHHHHhhcCCCCEEEEeCCChhHHHHHHHHc
Confidence 4899999999999999998875 457889999999999999999999999999888888999999999999999988888
Q ss_pred CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccc
Q 047371 80 GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILL 159 (222)
Q Consensus 80 ~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~ 159 (222)
+..+++|+|+++.+++.|++++..+++. .++.....+.... ..++||+|++|...
T Consensus 181 g~~~V~avDid~~al~~a~~n~~~n~~~-~~~~~~~~~~~~~------------------------~~~~fDlVvan~~~ 235 (288)
T TIGR00406 181 GAAKVVGIDIDPLAVESARKNAELNQVS-DRLQVKLIYLEQP------------------------IEGKADVIVANILA 235 (288)
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHcCCC-cceEEEecccccc------------------------cCCCceEEEEecCH
Confidence 7789999999999999999999888775 3444444332111 35689999999988
Q ss_pred ccHHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHhhhhcceecccCCce
Q 047371 160 NPLPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSEFLEDILVSEKDDWR 212 (222)
Q Consensus 160 ~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 212 (222)
+.+..++..+.+.|||||+++++++...+..++.+.+...|...+....++|.
T Consensus 236 ~~l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~~f~~~~~~~~~~W~ 288 (288)
T TIGR00406 236 EVIKELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQGFTVVEIRQREEWC 288 (288)
T ss_pred HHHHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHccCceeeEeccCCCC
Confidence 87888999999999999999999999999999999998888888888899984
No 4
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.96 E-value=5.6e-28 Score=200.94 Aligned_cols=188 Identities=45% Similarity=0.754 Sum_probs=164.5
Q ss_pred CCccceEeccceeeeecCCCCCCCcceeEEeCCCcccccCCcchhHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHhC
Q 047371 1 ESFHPVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFG 80 (222)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~~ 80 (222)
++|+|++++++++++|+|..+.......+.++|+++|++|.|+++..+++.+.....++.+|||+|||+|.+++.+++.+
T Consensus 62 ~~~~p~~~g~~~~i~p~~~~~~~~~~~~i~i~p~~afgtg~h~tt~~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~g 141 (250)
T PRK00517 62 KYFHPIRIGDRLWIVPSWEDPPDPDEINIELDPGMAFGTGTHPTTRLCLEALEKLVLPGKTVLDVGCGSGILAIAAAKLG 141 (250)
T ss_pred HHCCCEEEcCCEEEECCCcCCCCCCeEEEEECCCCccCCCCCHHHHHHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHcC
Confidence 47999999999999999998866788999999999999999999999999998888889999999999999999888877
Q ss_pred CCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEeccccc
Q 047371 81 AAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLN 160 (222)
Q Consensus 81 ~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~ 160 (222)
..+++|+|+++.+++.|++++..+++. .++.+.. .+.+||+|++|...+
T Consensus 142 ~~~v~giDis~~~l~~A~~n~~~~~~~-~~~~~~~------------------------------~~~~fD~Vvani~~~ 190 (250)
T PRK00517 142 AKKVLAVDIDPQAVEAARENAELNGVE-LNVYLPQ------------------------------GDLKADVIVANILAN 190 (250)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHcCCC-ceEEEcc------------------------------CCCCcCEEEEcCcHH
Confidence 677999999999999999999887763 2232211 122699999998777
Q ss_pred cHHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHhh-hhcceecccCCceEeecccC
Q 047371 161 PLPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSEF-LEDILVSEKDDWRCVSGTKF 219 (222)
Q Consensus 161 ~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~w~~~~~~k~ 219 (222)
.+..+++++.+.|||||.++++++...+..++.+.+... |........++|.++..+|+
T Consensus 191 ~~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~~~~~~~~~~W~~~~~~~~ 250 (250)
T PRK00517 191 PLLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGFTLDEVLERGEWVALVGKKK 250 (250)
T ss_pred HHHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCCEEEEEEEeCCEEEEEEEeC
Confidence 788899999999999999999999888888998888876 88888899999999998874
No 5
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.78 E-value=2.7e-17 Score=129.15 Aligned_cols=157 Identities=25% Similarity=0.354 Sum_probs=110.7
Q ss_pred eeEEeCCCcccccCCcchhHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHhC-CCEEEEEeCChHHHHHHHHHHHhcC
Q 047371 27 TNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFG-AAMFVGVDIDPQVIKSAHQNAALNN 105 (222)
Q Consensus 27 ~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~ 105 (222)
.++...|+..-.....+.+.++.+.+... ++.+|||+|||+|.+++.+++.. ..+++++|+++.+++.+++++..++
T Consensus 2 ~~~~~~~gvFs~~~~d~~t~lL~~~l~~~--~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~ 79 (170)
T PF05175_consen 2 LEFITHPGVFSPPRLDAGTRLLLDNLPKH--KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNG 79 (170)
T ss_dssp EEEEEETTSTTTTSHHHHHHHHHHHHHHH--TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTT
T ss_pred EEEEECCCeeCCCCCCHHHHHHHHHHhhc--cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcC
Confidence 34566666543333345677777777655 78899999999999999999864 4479999999999999999999999
Q ss_pred CCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc--------HHHHHHHHHHcccCCe
Q 047371 106 IGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP--------LPQLADHIVSYAKPGA 177 (222)
Q Consensus 106 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~--------~~~~l~~~~~~LkpgG 177 (222)
+. ++++...|..... +.++||+|++|||++. ..++++.+.++|||||
T Consensus 80 ~~--~v~~~~~d~~~~~-----------------------~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G 134 (170)
T PF05175_consen 80 LE--NVEVVQSDLFEAL-----------------------PDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGG 134 (170)
T ss_dssp CT--TEEEEESSTTTTC-----------------------CTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEE
T ss_pred cc--ccccccccccccc-----------------------cccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCC
Confidence 86 4778777653321 4688999999999853 4668999999999999
Q ss_pred EEEEecCCCCcHHHHHHHHHhhhhcceec-ccCCceE
Q 047371 178 VVGISGILSEQLPRIINRYSEFLEDILVS-EKDDWRC 213 (222)
Q Consensus 178 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~w~~ 213 (222)
.+++..........+ +++.|...++. +.++|..
T Consensus 135 ~l~lv~~~~~~~~~~---l~~~f~~~~~~~~~~~~~v 168 (170)
T PF05175_consen 135 RLFLVINSHLGYERL---LKELFGDVEVVAKNKGFRV 168 (170)
T ss_dssp EEEEEEETTSCHHHH---HHHHHS--EEEEEESSEEE
T ss_pred EEEEEeecCCChHHH---HHHhcCCEEEEEECCCEEE
Confidence 998753333333333 56666655553 4455543
No 6
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.74 E-value=6e-17 Score=132.63 Aligned_cols=119 Identities=18% Similarity=0.307 Sum_probs=101.7
Q ss_pred cCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371 57 KGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY 135 (222)
Q Consensus 57 ~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 135 (222)
.+|.+|||+|||||.++..+++. +.++|+|+|+|+.|++.|++.....+.. ++.++.+|++.+++
T Consensus 50 ~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~--~i~fv~~dAe~LPf------------ 115 (238)
T COG2226 50 KPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQ--NVEFVVGDAENLPF------------ 115 (238)
T ss_pred CCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCcc--ceEEEEechhhCCC------------
Confidence 37999999999999999999875 6789999999999999999999887776 49999999998876
Q ss_pred cccccccCCCCCCCeeEEEecccccc---HHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHhh
Q 047371 136 LSSHEIRGISETEEYDVVIANILLNP---LPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSEF 199 (222)
Q Consensus 136 ~~~~~~~~~~~~~~~D~v~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~ 199 (222)
++++||++.+...+.+ +...|+++.|.|||||.+++.++.......+...+..+
T Consensus 116 ----------~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~~ 172 (238)
T COG2226 116 ----------PDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYILY 172 (238)
T ss_pred ----------CCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCCCchhhHHHHHHH
Confidence 8999999999887765 56789999999999999999777666555555555443
No 7
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.70 E-value=3e-16 Score=114.18 Aligned_cols=103 Identities=31% Similarity=0.450 Sum_probs=83.9
Q ss_pred CCCcEEEEccCCCHHHHHHHH-hCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcc
Q 047371 58 GGELFLDYGTGSGILGIAAIK-FGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYL 136 (222)
Q Consensus 58 ~~~~vLD~G~G~G~~~~~la~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (222)
|+.+|||+|||+|.++..+++ .+..+++|+|+++.+++.|++++...+.. .++++...+. ....
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~i~~~~~d~-~~~~------------- 65 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLS-DRITFVQGDA-EFDP------------- 65 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTT-TTEEEEESCC-HGGT-------------
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCC-CCeEEEECcc-ccCc-------------
Confidence 588999999999999999998 46789999999999999999999666655 5899999888 2211
Q ss_pred ccccccCCCCCCCeeEEEecc-cccc------HHHHHHHHHHcccCCeEEEEec
Q 047371 137 SSHEIRGISETEEYDVVIANI-LLNP------LPQLADHIVSYAKPGAVVGISG 183 (222)
Q Consensus 137 ~~~~~~~~~~~~~~D~v~~~~-~~~~------~~~~l~~~~~~LkpgG~l~~~~ 183 (222)
...++||+|++.. ..+. ...+++.+.+.|+|||++++..
T Consensus 66 --------~~~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 66 --------DFLEPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp --------TTSSCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred --------ccCCCCCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 1456799999988 3332 2457999999999999999863
No 8
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.69 E-value=3.7e-16 Score=128.51 Aligned_cols=120 Identities=18% Similarity=0.269 Sum_probs=85.5
Q ss_pred hcCCCcEEEEccCCCHHHHHHHHh--CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371 56 IKGGELFLDYGTGSGILGIAAIKF--GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV 133 (222)
Q Consensus 56 ~~~~~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 133 (222)
.++|.+|||+|||+|.++..+++. +..+|+|+|+|+.|++.|+++....+.. ++++...|++.+++
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~--~i~~v~~da~~lp~---------- 112 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQ--NIEFVQGDAEDLPF---------- 112 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT----SEEEEE-BTTB--S----------
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCC--CeeEEEcCHHHhcC----------
Confidence 457899999999999999998875 3479999999999999999999887765 89999999988765
Q ss_pred hccccccccCCCCCCCeeEEEecccccc---HHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHhh
Q 047371 134 EYLSSHEIRGISETEEYDVVIANILLNP---LPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSEF 199 (222)
Q Consensus 134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~ 199 (222)
++++||+|++...++. ....+++++|+|||||.+++.++......-+...+.-+
T Consensus 113 ------------~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~~~~~~y 169 (233)
T PF01209_consen 113 ------------PDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSKPRNPLLRALYKFY 169 (233)
T ss_dssp -------------TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-SSHHHHHHHHH-
T ss_pred ------------CCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccCCCCchhhceeeee
Confidence 7899999999877654 56689999999999999998766554444444444444
No 9
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.68 E-value=3.5e-15 Score=129.16 Aligned_cols=165 Identities=16% Similarity=0.177 Sum_probs=115.8
Q ss_pred CCcceeEEeCCCcccccCCcchhHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHH
Q 047371 23 DVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNA 101 (222)
Q Consensus 23 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~ 101 (222)
......+...|+..+..+....+.++++.+... ...+|||+|||+|.++..+++. +..+++++|+++.+++.|++++
T Consensus 163 ~~~~l~i~~~pgvFs~~~lD~gt~lLl~~l~~~--~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl 240 (342)
T PRK09489 163 QVDGLTVKTLPGVFSRDGLDVGSQLLLSTLTPH--TKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATL 240 (342)
T ss_pred ecCCEEEEeCCCCCCCCCCCHHHHHHHHhcccc--CCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH
Confidence 344456777777766655666777777766432 3457999999999999998876 4568999999999999999999
Q ss_pred HhcCCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc--------HHHHHHHHHHcc
Q 047371 102 ALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP--------LPQLADHIVSYA 173 (222)
Q Consensus 102 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~--------~~~~l~~~~~~L 173 (222)
..+++. ..+...|.... ..++||+|++|+|+|. ...++.++.++|
T Consensus 241 ~~n~l~---~~~~~~D~~~~------------------------~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~L 293 (342)
T PRK09489 241 AANGLE---GEVFASNVFSD------------------------IKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHL 293 (342)
T ss_pred HHcCCC---CEEEEcccccc------------------------cCCCccEEEECCCccCCccccHHHHHHHHHHHHHhc
Confidence 888764 23444443211 3567999999999975 356899999999
Q ss_pred cCCeEEEEecCCCCcHHHHHHHHHhhhhccee-cccCCceEeecccC
Q 047371 174 KPGAVVGISGILSEQLPRIINRYSEFLEDILV-SEKDDWRCVSGTKF 219 (222)
Q Consensus 174 kpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~w~~~~~~k~ 219 (222)
||||.+++.....-.-. +.+++.|...+. ...+.|..+.++|-
T Consensus 294 kpgG~L~iVan~~l~y~---~~l~~~Fg~~~~la~~~~f~v~~a~~~ 337 (342)
T PRK09489 294 NSGGELRIVANAFLPYP---DLLDETFGSHEVLAQTGRFKVYRAIMT 337 (342)
T ss_pred CcCCEEEEEEeCCCChH---HHHHHHcCCeEEEEeCCCEEEEEEEcc
Confidence 99999988643222222 233333444443 46677777777653
No 10
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=2.7e-15 Score=125.54 Aligned_cols=163 Identities=19% Similarity=0.256 Sum_probs=118.7
Q ss_pred cceeEEeCCCcccccCCcchhHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHh
Q 047371 25 QATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAAL 103 (222)
Q Consensus 25 ~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~ 103 (222)
....|.-.|+..-....-..++++++.|... .+.+|||+|||.|-+++.+++. +..+++-+|+|..+++.|++|+..
T Consensus 127 ~~~~~~t~pGVFS~~~lD~GS~lLl~~l~~~--~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~ 204 (300)
T COG2813 127 HELTFKTLPGVFSRDKLDKGSRLLLETLPPD--LGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAA 204 (300)
T ss_pred CceEEEeCCCCCcCCCcChHHHHHHHhCCcc--CCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHH
Confidence 3455666666544333444667666666433 3449999999999999999986 568999999999999999999999
Q ss_pred cCCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc--------HHHHHHHHHHcccC
Q 047371 104 NNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP--------LPQLADHIVSYAKP 175 (222)
Q Consensus 104 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~--------~~~~l~~~~~~Lkp 175 (222)
|+++ +..+...+...- -.++||+|++|||+|. -..++..+.++|++
T Consensus 205 N~~~--~~~v~~s~~~~~------------------------v~~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~ 258 (300)
T COG2813 205 NGVE--NTEVWASNLYEP------------------------VEGKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKP 258 (300)
T ss_pred cCCC--ccEEEEeccccc------------------------ccccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhcc
Confidence 9886 333333322111 1338999999999986 23689999999999
Q ss_pred CeEEEEecCCCCcHHHHHHHHHhhhhcce-ecccCCceEeeccc
Q 047371 176 GAVVGISGILSEQLPRIINRYSEFLEDIL-VSEKDDWRCVSGTK 218 (222)
Q Consensus 176 gG~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~w~~~~~~k 218 (222)
||.+.+... ........+.+.|...+ +.+.+++..+..+|
T Consensus 259 gGeL~iVan---~~l~y~~~L~~~Fg~v~~la~~~gf~Vl~a~k 299 (300)
T COG2813 259 GGELWIVAN---RHLPYEKKLKELFGNVEVLAKNGGFKVLRAKK 299 (300)
T ss_pred CCEEEEEEc---CCCChHHHHHHhcCCEEEEEeCCCEEEEEEec
Confidence 999998643 44456667777777554 56778888777765
No 11
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.66 E-value=1.1e-14 Score=123.33 Aligned_cols=145 Identities=15% Similarity=0.190 Sum_probs=107.7
Q ss_pred eeEEeCCCcccccCCcchhHHHHHHHHhhh--cCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHh
Q 047371 27 TNIILNPGLAFGTGEHATTKLCLLLLQSLI--KGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAAL 103 (222)
Q Consensus 27 ~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~--~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~ 103 (222)
..+.++|+.-+ ....+..++...+...+ +++.+|||+|||+|.+++.+++. +..+++|+|+|+.+++.|++++..
T Consensus 90 ~~f~v~~~vli--pr~~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~ 167 (284)
T TIGR03533 90 LEFYVDERVLI--PRSPIAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIER 167 (284)
T ss_pred cEEEECCCCcc--CCCchHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH
Confidence 56788887554 23446666666665433 34578999999999999999875 457999999999999999999998
Q ss_pred cCCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc----------------------
Q 047371 104 NNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP---------------------- 161 (222)
Q Consensus 104 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~---------------------- 161 (222)
+++. .++.+...|.... . +.++||+|++|||+..
T Consensus 168 ~~~~-~~i~~~~~D~~~~----------------------~-~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg 223 (284)
T TIGR03533 168 HGLE-DRVTLIQSDLFAA----------------------L-PGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASG 223 (284)
T ss_pred cCCC-CcEEEEECchhhc----------------------c-CCCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCC
Confidence 8875 4788887765321 0 3457999999998632
Q ss_pred ------HHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHhh
Q 047371 162 ------LPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSEF 199 (222)
Q Consensus 162 ------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~ 199 (222)
+..++..+.++|+|||.+++. ....+ .++.+.+...
T Consensus 224 ~dGl~~~~~il~~a~~~L~~gG~l~~e-~g~~~-~~v~~~~~~~ 265 (284)
T TIGR03533 224 EDGLDLVRRILAEAADHLNENGVLVVE-VGNSM-EALEEAYPDV 265 (284)
T ss_pred CcHHHHHHHHHHHHHHhcCCCCEEEEE-ECcCH-HHHHHHHHhC
Confidence 245688999999999999985 33333 5777777664
No 12
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.66 E-value=1.7e-15 Score=124.24 Aligned_cols=121 Identities=26% Similarity=0.369 Sum_probs=102.8
Q ss_pred cCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371 57 KGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY 135 (222)
Q Consensus 57 ~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 135 (222)
+...+|||+|||+|.+++.+++. ...+++|+|+++++.+.|+++++.++++ +++++...|...+..
T Consensus 43 ~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~-~ri~v~~~Di~~~~~------------ 109 (248)
T COG4123 43 PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLE-ERIQVIEADIKEFLK------------ 109 (248)
T ss_pred ccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcch-hceeEehhhHHHhhh------------
Confidence 34789999999999999999986 5589999999999999999999999987 699999999876631
Q ss_pred cccccccCCCCCCCeeEEEecccccc---------------------HHHHHHHHHHcccCCeEEEEecCCCCcHHHHHH
Q 047371 136 LSSHEIRGISETEEYDVVIANILLNP---------------------LPQLADHIVSYAKPGAVVGISGILSEQLPRIIN 194 (222)
Q Consensus 136 ~~~~~~~~~~~~~~~D~v~~~~~~~~---------------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~ 194 (222)
.....+||+|+||||+.. +.++++.+.++|||||.+++. ...+...++.+
T Consensus 110 --------~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V-~r~erl~ei~~ 180 (248)
T COG4123 110 --------ALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFV-HRPERLAEIIE 180 (248)
T ss_pred --------cccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEE-ecHHHHHHHHH
Confidence 013447999999999853 456899999999999999997 67788888888
Q ss_pred HHHhh
Q 047371 195 RYSEF 199 (222)
Q Consensus 195 ~~~~~ 199 (222)
.+..+
T Consensus 181 ~l~~~ 185 (248)
T COG4123 181 LLKSY 185 (248)
T ss_pred HHHhc
Confidence 88874
No 13
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.65 E-value=1.3e-14 Score=123.99 Aligned_cols=163 Identities=15% Similarity=0.156 Sum_probs=117.0
Q ss_pred eeEEeCCCcccccCCcchhHHHHHHHHhhhcC-C-CcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHh
Q 047371 27 TNIILNPGLAFGTGEHATTKLCLLLLQSLIKG-G-ELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAAL 103 (222)
Q Consensus 27 ~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~-~-~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~ 103 (222)
..+.++|+.-+ ...++..++...+...++. + .+|||+|||+|.+++.++.. +..+++++|+|+.+++.|++++..
T Consensus 102 ~~f~v~~~vli--pr~~te~lv~~~l~~~~~~~~~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~ 179 (307)
T PRK11805 102 LEFYVDERVLV--PRSPIAELIEDGFAPWLEDPPVTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIER 179 (307)
T ss_pred cEEEECCCCcC--CCCchHHHHHHHHHHHhccCCCCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 56778887643 3444666666665544332 3 68999999999999998875 567999999999999999999998
Q ss_pred cCCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc----------------------
Q 047371 104 NNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP---------------------- 161 (222)
Q Consensus 104 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~---------------------- 161 (222)
+++. .++.+...|..... +.++||+|++|||+..
T Consensus 180 ~~l~-~~i~~~~~D~~~~l-----------------------~~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg 235 (307)
T PRK11805 180 HGLE-DRVTLIESDLFAAL-----------------------PGRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAG 235 (307)
T ss_pred hCCC-CcEEEEECchhhhC-----------------------CCCCccEEEECCCCCCccchhhcCHhhccCccceeeCC
Confidence 8875 36888877753210 3457999999998632
Q ss_pred ------HHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHhh-hhcceecccCCceEeecc
Q 047371 162 ------LPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSEF-LEDILVSEKDDWRCVSGT 217 (222)
Q Consensus 162 ------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~w~~~~~~ 217 (222)
+..++..+.++|+|||.+++. .... ..++.+.+... +........+.|..+..+
T Consensus 236 ~dGl~~~~~i~~~a~~~L~pgG~l~~E-~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (307)
T PRK11805 236 DDGLDLVRRILAEAPDYLTEDGVLVVE-VGNS-RVHLEEAYPDVPFTWLEFENGGDGVFLLTR 296 (307)
T ss_pred CchHHHHHHHHHHHHHhcCCCCEEEEE-ECcC-HHHHHHHHhhCCCEEEEecCCCceEEEEEH
Confidence 245789999999999999985 3333 34566666553 445566666777666554
No 14
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.65 E-value=9.6e-15 Score=115.80 Aligned_cols=114 Identities=17% Similarity=0.205 Sum_probs=93.2
Q ss_pred CCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcc
Q 047371 58 GGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYL 136 (222)
Q Consensus 58 ~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (222)
++.+|||+|||+|.++..++.. +..+|+|+|.++.+++.+++++..+++. ++++...+...+.
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~--~i~~i~~d~~~~~-------------- 105 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLN--NVEIVNGRAEDFQ-------------- 105 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCC--CeEEEecchhhcc--------------
Confidence 4889999999999999988765 4578999999999999999998888764 6888888765431
Q ss_pred ccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHh
Q 047371 137 SSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSE 198 (222)
Q Consensus 137 ~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~ 198 (222)
..++||+|+++. ++++.++++.+.++|+|||.+++. .......++....+.
T Consensus 106 ---------~~~~fD~I~s~~-~~~~~~~~~~~~~~LkpgG~lvi~-~~~~~~~~~~~~~e~ 156 (181)
T TIGR00138 106 ---------HEEQFDVITSRA-LASLNVLLELTLNLLKVGGYFLAY-KGKKYLDEIEEAKRK 156 (181)
T ss_pred ---------ccCCccEEEehh-hhCHHHHHHHHHHhcCCCCEEEEE-cCCCcHHHHHHHHHh
Confidence 356899999987 667888999999999999999986 455666666666555
No 15
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.65 E-value=1.5e-14 Score=115.09 Aligned_cols=132 Identities=14% Similarity=0.184 Sum_probs=101.9
Q ss_pred hcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371 56 IKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE 134 (222)
Q Consensus 56 ~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 134 (222)
+.++.+|||+|||+|.++..+++. +..+++++|+++.+++.|++++..+++. ++++...+....
T Consensus 29 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~--~i~~~~~d~~~~------------- 93 (187)
T PRK08287 29 LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCG--NIDIIPGEAPIE------------- 93 (187)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC--CeEEEecCchhh-------------
Confidence 457889999999999999988875 4578999999999999999999877764 677776654211
Q ss_pred ccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHhh-hhcce--ecccCCc
Q 047371 135 YLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSEF-LEDIL--VSEKDDW 211 (222)
Q Consensus 135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~w 211 (222)
..++||+|+++.....+..+++.+.+.|+|||++++......+..++.+.+++. +..++ ....+.|
T Consensus 94 -----------~~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~ 162 (187)
T PRK08287 94 -----------LPGKADAIFIGGSGGNLTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVSELDCVQLQVSSL 162 (187)
T ss_pred -----------cCcCCCEEEECCCccCHHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCCcceEEEEEEEee
Confidence 235799999987766788899999999999999999766677777887777764 44333 2334445
Q ss_pred eE
Q 047371 212 RC 213 (222)
Q Consensus 212 ~~ 213 (222)
..
T Consensus 163 ~~ 164 (187)
T PRK08287 163 TP 164 (187)
T ss_pred eE
Confidence 43
No 16
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.64 E-value=1.3e-14 Score=126.60 Aligned_cols=148 Identities=15% Similarity=0.175 Sum_probs=105.2
Q ss_pred chhHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCC-CceeEEecCCcc
Q 047371 43 ATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGP-KKIKLHLVPDRT 120 (222)
Q Consensus 43 ~~~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~-~~v~~~~~~~~~ 120 (222)
..++++++.+... .+.+|||+|||+|.+++.+++. +..+|+++|+|+.+++.|++++..++... .++++...|...
T Consensus 215 ~GtrllL~~lp~~--~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~ 292 (378)
T PRK15001 215 IGARFFMQHLPEN--LEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS 292 (378)
T ss_pred hHHHHHHHhCCcc--cCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccc
Confidence 3566655555321 2458999999999999998875 56799999999999999999998776431 256666655422
Q ss_pred cccccccccccchhccccccccCCCCCCCeeEEEecccccc--------HHHHHHHHHHcccCCeEEEEecCCCCcHHHH
Q 047371 121 FTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP--------LPQLADHIVSYAKPGAVVGISGILSEQLPRI 192 (222)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~--------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~ 192 (222)
. + +..+||+|++|||++. ..+++..+.++|+|||.+++..... ...
T Consensus 293 ~----------~-------------~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~nr~---l~y 346 (378)
T PRK15001 293 G----------V-------------EPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRH---LDY 346 (378)
T ss_pred c----------C-------------CCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEecC---cCH
Confidence 1 0 3457999999999874 2467899999999999999974322 223
Q ss_pred HHHHHhhhhcceec-ccCCceEeeccc
Q 047371 193 INRYSEFLEDILVS-EKDDWRCVSGTK 218 (222)
Q Consensus 193 ~~~~~~~~~~~~~~-~~~~w~~~~~~k 218 (222)
...+++.|...+.. ....+..+.++|
T Consensus 347 ~~~L~~~fg~~~~va~~~kf~vl~a~k 373 (378)
T PRK15001 347 FHKLKKIFGNCTTIATNNKFVVLKAVK 373 (378)
T ss_pred HHHHHHHcCCceEEccCCCEEEEEEEe
Confidence 35555556555553 556667776666
No 17
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.64 E-value=5.8e-15 Score=123.17 Aligned_cols=135 Identities=21% Similarity=0.356 Sum_probs=105.2
Q ss_pred ceeEEeCCCcccccCCcchh--------HHHHHHH-Hhh-hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHH
Q 047371 26 ATNIILNPGLAFGTGEHATT--------KLCLLLL-QSL-IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIK 95 (222)
Q Consensus 26 ~~~~~~~~~~~f~~~~~~~~--------~~~~~~l-~~~-~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~ 95 (222)
.+.+.++|...|++...+.. ....+.+ .++ ++||++|||+|||.|.+++.+|+....+|+|+++|+++.+
T Consensus 30 fy~l~Ld~~~~Yscayf~~~~~tL~eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~ 109 (283)
T COG2230 30 FYRLFLDPSMTYSCAYFEDPDMTLEEAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLA 109 (283)
T ss_pred HHHHhcCCCCceeeEEeCCCCCChHHHHHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHH
Confidence 45556666665554444322 2223333 333 7899999999999999999999875689999999999999
Q ss_pred HHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc-----HHHHHHHHH
Q 047371 96 SAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP-----LPQLADHIV 170 (222)
Q Consensus 96 ~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~-----~~~~l~~~~ 170 (222)
.+++++...|++ .++++...|...+ .++||-|++-.++++ +..+++.+.
T Consensus 110 ~~~~r~~~~gl~-~~v~v~l~d~rd~-------------------------~e~fDrIvSvgmfEhvg~~~~~~ff~~~~ 163 (283)
T COG2230 110 YAEKRIAARGLE-DNVEVRLQDYRDF-------------------------EEPFDRIVSVGMFEHVGKENYDDFFKKVY 163 (283)
T ss_pred HHHHHHHHcCCC-cccEEEecccccc-------------------------ccccceeeehhhHHHhCcccHHHHHHHHH
Confidence 999999999987 5888888877654 344999999888876 567999999
Q ss_pred HcccCCeEEEEecCCC
Q 047371 171 SYAKPGAVVGISGILS 186 (222)
Q Consensus 171 ~~LkpgG~l~~~~~~~ 186 (222)
+.|+|||.+++.++..
T Consensus 164 ~~L~~~G~~llh~I~~ 179 (283)
T COG2230 164 ALLKPGGRMLLHSITG 179 (283)
T ss_pred hhcCCCceEEEEEecC
Confidence 9999999999865543
No 18
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.64 E-value=5e-15 Score=122.98 Aligned_cols=116 Identities=17% Similarity=0.257 Sum_probs=91.7
Q ss_pred hhHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHH---hCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcc
Q 047371 44 TTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIK---FGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRT 120 (222)
Q Consensus 44 ~~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~ 120 (222)
...++..++...++++.+|||+|||+|..+..+++ .+..+++|+|+|+.+++.|++++...+.. .++++...+...
T Consensus 42 ~~~~~~~~~~~~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~-~~v~~~~~d~~~ 120 (247)
T PRK15451 42 IISMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAP-TPVDVIEGDIRD 120 (247)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCC-CCeEEEeCChhh
Confidence 34444444555567889999999999999988876 25679999999999999999998876654 378888877654
Q ss_pred cccccccccccchhccccccccCCCCCCCeeEEEeccccccH-----HHHHHHHHHcccCCeEEEEecC
Q 047371 121 FTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPL-----PQLADHIVSYAKPGAVVGISGI 184 (222)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~-----~~~l~~~~~~LkpgG~l~~~~~ 184 (222)
. +...+|+|+++..++++ ..+++++++.|||||.+++.+.
T Consensus 121 ~------------------------~~~~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 121 I------------------------AIENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred C------------------------CCCCCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 4 33458999998877663 4589999999999999999754
No 19
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.64 E-value=1.2e-14 Score=114.90 Aligned_cols=128 Identities=21% Similarity=0.272 Sum_probs=96.8
Q ss_pred HHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccccccc
Q 047371 46 KLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASM 125 (222)
Q Consensus 46 ~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 125 (222)
.++.+.+.. .++.+|||+|||+|.++..+++.+. +++++|+++.+++.+++++..++. ++.+...|....
T Consensus 9 ~~l~~~l~~--~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~---~~~~~~~d~~~~---- 78 (179)
T TIGR00537 9 LLLEANLRE--LKPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNV---GLDVVMTDLFKG---- 78 (179)
T ss_pred HHHHHHHHh--cCCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCC---ceEEEEcccccc----
Confidence 444444432 3567899999999999999988764 899999999999999999887664 456666654322
Q ss_pred ccccccchhccccccccCCCCCCCeeEEEecccccc------------------------HHHHHHHHHHcccCCeEEEE
Q 047371 126 NERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP------------------------LPQLADHIVSYAKPGAVVGI 181 (222)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~------------------------~~~~l~~~~~~LkpgG~l~~ 181 (222)
..++||+|++|+|+++ +..+++++.++|||||.+++
T Consensus 79 --------------------~~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~ 138 (179)
T TIGR00537 79 --------------------VRGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQL 138 (179)
T ss_pred --------------------cCCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEE
Confidence 2458999999998742 24578999999999999998
Q ss_pred ecCCCCcHHHHHHHHHhh-hhcc
Q 047371 182 SGILSEQLPRIINRYSEF-LEDI 203 (222)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~-~~~~ 203 (222)
......+..++.+.+.+. |...
T Consensus 139 ~~~~~~~~~~~~~~l~~~gf~~~ 161 (179)
T TIGR00537 139 IQSSLNGEPDTFDKLDERGFRYE 161 (179)
T ss_pred EEeccCChHHHHHHHHhCCCeEE
Confidence 766666677777777664 4333
No 20
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.64 E-value=2.2e-14 Score=125.83 Aligned_cols=164 Identities=16% Similarity=0.147 Sum_probs=116.7
Q ss_pred eeEEeCCCcccccCCcchhHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcC
Q 047371 27 TNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNN 105 (222)
Q Consensus 27 ~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~ 105 (222)
..+.++|+.-. ..+.+..+.+.+...++++.+|||+|||+|.+++.++.. +..+++|+|+|+.+++.|++|+..++
T Consensus 223 ~~f~V~p~vLI---PRpeTE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g 299 (423)
T PRK14966 223 RRFAVNPNVLI---PRPETEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLG 299 (423)
T ss_pred cEEEeCCCccC---CCccHHHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC
Confidence 56788888554 345555555555444556779999999999999988864 66799999999999999999998766
Q ss_pred CCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc------------------------
Q 047371 106 IGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP------------------------ 161 (222)
Q Consensus 106 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~------------------------ 161 (222)
. ++.+...|...... ...++||+|++|||+..
T Consensus 300 ~---rV~fi~gDl~e~~l---------------------~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~d 355 (423)
T PRK14966 300 A---RVEFAHGSWFDTDM---------------------PSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSD 355 (423)
T ss_pred C---cEEEEEcchhcccc---------------------ccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCc
Confidence 3 67777776532210 02347999999999721
Q ss_pred ----HHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHhh-hhcceec--ccCCceEeeccc
Q 047371 162 ----LPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSEF-LEDILVS--EKDDWRCVSGTK 218 (222)
Q Consensus 162 ----~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~w~~~~~~k 218 (222)
+..+++.+.+.|+|||.+++. ....+..++.+.+... +..++.. -.|.-+.+.+++
T Consensus 356 GL~~yr~Ii~~a~~~LkpgG~lilE-iG~~Q~e~V~~ll~~~Gf~~v~v~kDl~G~dR~v~~~~ 418 (423)
T PRK14966 356 GLSCIRTLAQGAPDRLAEGGFLLLE-HGFDQGAAVRGVLAENGFSGVETLPDLAGLDRVTLGKY 418 (423)
T ss_pred hHHHHHHHHHHHHHhcCCCcEEEEE-ECccHHHHHHHHHHHCCCcEEEEEEcCCCCcEEEEEEE
Confidence 345778888999999998864 5667888888888764 5444332 234455555543
No 21
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.63 E-value=2.1e-15 Score=122.12 Aligned_cols=107 Identities=23% Similarity=0.338 Sum_probs=88.1
Q ss_pred CCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccc
Q 047371 58 GGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLS 137 (222)
Q Consensus 58 ~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (222)
+|.+|||+|||.|.++..+|+.| .+|+|+|.++.+++.|+..+...++. +++.....+.+..
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~G-a~VtgiD~se~~I~~Ak~ha~e~gv~---i~y~~~~~edl~~-------------- 120 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLG-ASVTGIDASEKPIEVAKLHALESGVN---IDYRQATVEDLAS-------------- 120 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCC-CeeEEecCChHHHHHHHHhhhhcccc---ccchhhhHHHHHh--------------
Confidence 79999999999999999999998 79999999999999999999888763 4454444433311
Q ss_pred cccccCCCCCCCeeEEEeccccccH---HHHHHHHHHcccCCeEEEEecCCCCcHH
Q 047371 138 SHEIRGISETEEYDVVIANILLNPL---PQLADHIVSYAKPGAVVGISGILSEQLP 190 (222)
Q Consensus 138 ~~~~~~~~~~~~~D~v~~~~~~~~~---~~~l~~~~~~LkpgG~l~~~~~~~~~~~ 190 (222)
..++||+|+|..+++|+ ..++..+.+++||||.++++++......
T Consensus 121 --------~~~~FDvV~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~STinrt~ka 168 (243)
T COG2227 121 --------AGGQFDVVTCMEVLEHVPDPESFLRACAKLVKPGGILFLSTINRTLKA 168 (243)
T ss_pred --------cCCCccEEEEhhHHHccCCHHHHHHHHHHHcCCCcEEEEeccccCHHH
Confidence 33799999999998884 4589999999999999999887644433
No 22
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.63 E-value=5.9e-15 Score=113.57 Aligned_cols=106 Identities=28% Similarity=0.418 Sum_probs=87.7
Q ss_pred cCCCcEEEEccCCCHHHHHHHH-h-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371 57 KGGELFLDYGTGSGILGIAAIK-F-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE 134 (222)
Q Consensus 57 ~~~~~vLD~G~G~G~~~~~la~-~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 134 (222)
+++.+|||+|||+|.++..+++ . +..+++|+|+++.+++.|++++...++. ++++...|...+..
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~--ni~~~~~d~~~l~~----------- 68 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD--NIEFIQGDIEDLPQ----------- 68 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST--TEEEEESBTTCGCG-----------
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc--ccceEEeehhcccc-----------
Confidence 4678999999999999999994 3 4689999999999999999999888876 89999998876521
Q ss_pred ccccccccCCCCCCCeeEEEecccccc---HHHHHHHHHHcccCCeEEEEecCC
Q 047371 135 YLSSHEIRGISETEEYDVVIANILLNP---LPQLADHIVSYAKPGAVVGISGIL 185 (222)
Q Consensus 135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~ 185 (222)
.+ + +.||+|+++.++++ ...+++.+.+.|+++|.+++....
T Consensus 69 --------~~-~-~~~D~I~~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 69 --------EL-E-EKFDIIISNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp --------CS-S-TTEEEEEEESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred --------cc-C-CCeeEEEEcCchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 00 2 78999999988766 345799999999999999987554
No 23
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.63 E-value=4.1e-15 Score=124.96 Aligned_cols=133 Identities=20% Similarity=0.316 Sum_probs=89.9
Q ss_pred eeEEeCCCcccccCCcc--------hhHHHHHHHHhh--hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHH
Q 047371 27 TNIILNPGLAFGTGEHA--------TTKLCLLLLQSL--IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKS 96 (222)
Q Consensus 27 ~~~~~~~~~~f~~~~~~--------~~~~~~~~l~~~--~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~ 96 (222)
+.+.++|.+.|+++..+ ......+.+... +++|++|||+|||.|.+++.+++....+|+|+.+|+.+.+.
T Consensus 21 y~l~Ld~~m~YS~~~~~~~~~~Le~AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~ 100 (273)
T PF02353_consen 21 YRLFLDPTMKYSCAYFDEGDDTLEEAQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEY 100 (273)
T ss_dssp HTTTS-TT---S----SSTT--HHHHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHH
T ss_pred HHHhcCCCCCCCCeecCCchhhHHHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHH
Confidence 34556667666655544 222223333333 78999999999999999999998734799999999999999
Q ss_pred HHHHHHhcCCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc-----HHHHHHHHHH
Q 047371 97 AHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP-----LPQLADHIVS 171 (222)
Q Consensus 97 a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~-----~~~~l~~~~~ 171 (222)
+++.+...++. +++++...|...+ ..+||.|++..++++ +..+++.+.+
T Consensus 101 a~~~~~~~gl~-~~v~v~~~D~~~~-------------------------~~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~ 154 (273)
T PF02353_consen 101 ARERIREAGLE-DRVEVRLQDYRDL-------------------------PGKFDRIVSIEMFEHVGRKNYPAFFRKISR 154 (273)
T ss_dssp HHHHHHCSTSS-STEEEEES-GGG----------------------------S-SEEEEESEGGGTCGGGHHHHHHHHHH
T ss_pred HHHHHHhcCCC-CceEEEEeecccc-------------------------CCCCCEEEEEechhhcChhHHHHHHHHHHH
Confidence 99999999987 5888888876544 238999999888876 4678999999
Q ss_pred cccCCeEEEEecCC
Q 047371 172 YAKPGAVVGISGIL 185 (222)
Q Consensus 172 ~LkpgG~l~~~~~~ 185 (222)
.|||||.+++..+.
T Consensus 155 ~LkpgG~~~lq~i~ 168 (273)
T PF02353_consen 155 LLKPGGRLVLQTIT 168 (273)
T ss_dssp HSETTEEEEEEEEE
T ss_pred hcCCCcEEEEEecc
Confidence 99999999985443
No 24
>PRK14967 putative methyltransferase; Provisional
Probab=99.62 E-value=3.2e-14 Score=116.38 Aligned_cols=129 Identities=29% Similarity=0.349 Sum_probs=95.3
Q ss_pred hhHHHHHHHHhh-hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccc
Q 047371 44 TTKLCLLLLQSL-IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFT 122 (222)
Q Consensus 44 ~~~~~~~~l~~~-~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~ 122 (222)
.+.++...+... ++++.+|||+|||+|.++..+++.+..+++++|+++.+++.+++++..+++ ++.+...|....
T Consensus 21 ds~~l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~---~~~~~~~d~~~~- 96 (223)
T PRK14967 21 DTQLLADALAAEGLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV---DVDVRRGDWARA- 96 (223)
T ss_pred cHHHHHHHHHhcccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC---eeEEEECchhhh-
Confidence 344555555543 567889999999999999998887656999999999999999999887664 455665554321
Q ss_pred cccccccccchhccccccccCCCCCCCeeEEEecccccc------------------------HHHHHHHHHHcccCCeE
Q 047371 123 ASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP------------------------LPQLADHIVSYAKPGAV 178 (222)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~------------------------~~~~l~~~~~~LkpgG~ 178 (222)
.+.++||+|++|+|+.. +..+++++.++|||||.
T Consensus 97 ----------------------~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~ 154 (223)
T PRK14967 97 ----------------------VEFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGS 154 (223)
T ss_pred ----------------------ccCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcE
Confidence 14568999999988653 24467889999999999
Q ss_pred EEEecCCCCcHHHHHHHHHh
Q 047371 179 VGISGILSEQLPRIINRYSE 198 (222)
Q Consensus 179 l~~~~~~~~~~~~~~~~~~~ 198 (222)
+++......+..++.+.++.
T Consensus 155 l~~~~~~~~~~~~~~~~l~~ 174 (223)
T PRK14967 155 LLLVQSELSGVERTLTRLSE 174 (223)
T ss_pred EEEEEecccCHHHHHHHHHH
Confidence 99853333345566666654
No 25
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.62 E-value=1.9e-14 Score=114.62 Aligned_cols=115 Identities=23% Similarity=0.239 Sum_probs=91.8
Q ss_pred hhcCCCcEEEEccCCCHHHHHHHH-hCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371 55 LIKGGELFLDYGTGSGILGIAAIK-FGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV 133 (222)
Q Consensus 55 ~~~~~~~vLD~G~G~G~~~~~la~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 133 (222)
.++++.+|||+|||+|..+..+++ .+..+|+++|.++.+++.|++++..+++. ++.+...+...+.
T Consensus 42 ~l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~--~i~~~~~d~~~~~----------- 108 (187)
T PRK00107 42 YLPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLK--NVTVVHGRAEEFG----------- 108 (187)
T ss_pred hcCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCC--CEEEEeccHhhCC-----------
Confidence 356689999999999999998886 45689999999999999999999988875 5888888765441
Q ss_pred hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHH
Q 047371 134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGILSEQLPRIINRY 196 (222)
Q Consensus 134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~ 196 (222)
..++||+|+++. +..+..+++.+.++|||||++++.. .......+.+..
T Consensus 109 ------------~~~~fDlV~~~~-~~~~~~~l~~~~~~LkpGG~lv~~~-~~~~~~~l~~~~ 157 (187)
T PRK00107 109 ------------QEEKFDVVTSRA-VASLSDLVELCLPLLKPGGRFLALK-GRDPEEEIAELP 157 (187)
T ss_pred ------------CCCCccEEEEcc-ccCHHHHHHHHHHhcCCCeEEEEEe-CCChHHHHHHHH
Confidence 345899999986 4557889999999999999999863 334444444333
No 26
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.61 E-value=2.9e-14 Score=125.64 Aligned_cols=157 Identities=14% Similarity=0.102 Sum_probs=118.2
Q ss_pred CcceeEEeCCCcccccCCcchhHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHh
Q 047371 24 VQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAAL 103 (222)
Q Consensus 24 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~ 103 (222)
++...+.++......+|.+...+....++..+ .++++|||+|||+|.+++.++..+..+++++|+|+.+++.|++|+..
T Consensus 187 E~g~~f~vdl~~g~ktG~flDqr~~R~~~~~~-~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~ 265 (396)
T PRK15128 187 EHGMKLLVDIQGGHKTGYYLDQRDSRLATRRY-VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVEL 265 (396)
T ss_pred ECCEEEEEecccccccCcChhhHHHHHHHHHh-cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH
Confidence 44677788888777888887777766666655 35899999999999999987766667999999999999999999999
Q ss_pred cCCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc------------HHHHHHHHHH
Q 047371 104 NNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP------------LPQLADHIVS 171 (222)
Q Consensus 104 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~------------~~~~l~~~~~ 171 (222)
+++..+++++...|...+.. .+ ....++||+|++|||+.. +.+++..+.+
T Consensus 266 Ngl~~~~v~~i~~D~~~~l~-------~~-----------~~~~~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~ 327 (396)
T PRK15128 266 NKLDLSKAEFVRDDVFKLLR-------TY-----------RDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQ 327 (396)
T ss_pred cCCCCCcEEEEEccHHHHHH-------HH-----------HhcCCCCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 98853478888887644310 00 002457999999999732 4556778899
Q ss_pred cccCCeEEEE-ecCCCCcHHHHHHHHHhh
Q 047371 172 YAKPGAVVGI-SGILSEQLPRIINRYSEF 199 (222)
Q Consensus 172 ~LkpgG~l~~-~~~~~~~~~~~~~~~~~~ 199 (222)
+|+|||.+++ +|...-+.+++.+.+.+.
T Consensus 328 lLk~gG~lv~~scs~~~~~~~f~~~v~~a 356 (396)
T PRK15128 328 LLNPGGILLTFSCSGLMTSDLFQKIIADA 356 (396)
T ss_pred HcCCCeEEEEEeCCCcCCHHHHHHHHHHH
Confidence 9999999886 555555666666666544
No 27
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.61 E-value=1.7e-14 Score=129.20 Aligned_cols=158 Identities=14% Similarity=0.081 Sum_probs=118.8
Q ss_pred ceeEEeCCCcccccCCcchhHHHHHHHHhh-hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhc
Q 047371 26 ATNIILNPGLAFGTGEHATTKLCLLLLQSL-IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALN 104 (222)
Q Consensus 26 ~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~-~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~ 104 (222)
...+.++|+..|..+...+..++..++... ..++.+|||+|||+|.+++.+++.. .+++|+|+|+.+++.|++++..+
T Consensus 264 g~~f~~~~~~F~q~n~~~~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~ 342 (443)
T PRK13168 264 GLRLAFSPRDFIQVNAQVNQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRN 342 (443)
T ss_pred CeEEEECCCCeEEcCHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHc
Confidence 456788887766554444444444444333 3567899999999999999998875 68999999999999999999888
Q ss_pred CCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecC
Q 047371 105 NIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGI 184 (222)
Q Consensus 105 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 184 (222)
++. ++.+...|....... ... ..++||+|++|||.....+.++.+.+ ++|++.+|++|.
T Consensus 343 ~~~--~v~~~~~d~~~~l~~-----~~~-------------~~~~fD~Vi~dPPr~g~~~~~~~l~~-~~~~~ivyvSCn 401 (443)
T PRK13168 343 GLD--NVTFYHANLEEDFTD-----QPW-------------ALGGFDKVLLDPPRAGAAEVMQALAK-LGPKRIVYVSCN 401 (443)
T ss_pred CCC--ceEEEEeChHHhhhh-----hhh-------------hcCCCCEEEECcCCcChHHHHHHHHh-cCCCeEEEEEeC
Confidence 875 788888877432100 000 24579999999999887788877766 699999999999
Q ss_pred CCCcHHHHHHHHHhhhhccee
Q 047371 185 LSEQLPRIINRYSEFLEDILV 205 (222)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~ 205 (222)
+....+++......+|....+
T Consensus 402 p~tlaRDl~~L~~~gY~l~~i 422 (443)
T PRK13168 402 PATLARDAGVLVEAGYRLKRA 422 (443)
T ss_pred hHHhhccHHHHhhCCcEEEEE
Confidence 999999998776665544443
No 28
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.61 E-value=5.2e-15 Score=103.78 Aligned_cols=92 Identities=26% Similarity=0.399 Sum_probs=75.0
Q ss_pred EEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcccccccc
Q 047371 63 LDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIR 142 (222)
Q Consensus 63 LD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (222)
||+|||+|..+..+++.+..+++++|+++.+++.++++.... ++.+...+...+++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~-----~~~~~~~d~~~l~~------------------- 56 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNE-----GVSFRQGDAEDLPF------------------- 56 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTS-----TEEEEESBTTSSSS-------------------
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccccc-----CchheeehHHhCcc-------------------
Confidence 799999999999999886789999999999999999987543 34477777766654
Q ss_pred CCCCCCCeeEEEeccccccH---HHHHHHHHHcccCCeEEEE
Q 047371 143 GISETEEYDVVIANILLNPL---PQLADHIVSYAKPGAVVGI 181 (222)
Q Consensus 143 ~~~~~~~~D~v~~~~~~~~~---~~~l~~~~~~LkpgG~l~~ 181 (222)
++++||+|+++..+++. ..+++++.|.|||||++++
T Consensus 57 ---~~~sfD~v~~~~~~~~~~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 57 ---PDNSFDVVFSNSVLHHLEDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp ----TT-EEEEEEESHGGGSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred ---ccccccccccccceeeccCHHHHHHHHHHHcCcCeEEeC
Confidence 78899999999888764 5689999999999999985
No 29
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.61 E-value=4.3e-14 Score=115.87 Aligned_cols=115 Identities=17% Similarity=0.217 Sum_probs=90.1
Q ss_pred hcCCCcEEEEccCCCHHHHHHHHh--CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371 56 IKGGELFLDYGTGSGILGIAAIKF--GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV 133 (222)
Q Consensus 56 ~~~~~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 133 (222)
++++.+|||+|||+|..+..+++. +..+++|+|+++.+++.|+++....++. ++.+...+......
T Consensus 43 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~--~v~~~~~d~~~~~~---------- 110 (231)
T TIGR02752 43 VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLH--NVELVHGNAMELPF---------- 110 (231)
T ss_pred CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCC--ceEEEEechhcCCC----------
Confidence 457899999999999999988875 3469999999999999999998766653 78888777654422
Q ss_pred hccccccccCCCCCCCeeEEEecccccc---HHHHHHHHHHcccCCeEEEEecCCCCcHHHHHH
Q 047371 134 EYLSSHEIRGISETEEYDVVIANILLNP---LPQLADHIVSYAKPGAVVGISGILSEQLPRIIN 194 (222)
Q Consensus 134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~ 194 (222)
+.++||+|+++..+++ ...+++++.++|+|||.+++.+....+...+..
T Consensus 111 ------------~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~ 162 (231)
T TIGR02752 111 ------------DDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQ 162 (231)
T ss_pred ------------CCCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEECCCCCChHHHH
Confidence 5678999999877655 467899999999999999986554444333333
No 30
>PLN02244 tocopherol O-methyltransferase
Probab=99.61 E-value=1.9e-14 Score=124.78 Aligned_cols=105 Identities=18% Similarity=0.203 Sum_probs=88.3
Q ss_pred cCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcc
Q 047371 57 KGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYL 136 (222)
Q Consensus 57 ~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (222)
+++.+|||+|||+|.++..+++....+|+|+|+++.+++.|+++....++. .++.+...|....++
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~-~~v~~~~~D~~~~~~------------- 182 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLS-DKVSFQVADALNQPF------------- 182 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCC-CceEEEEcCcccCCC-------------
Confidence 467899999999999999998864579999999999999999988877765 478888888765533
Q ss_pred ccccccCCCCCCCeeEEEeccccccH---HHHHHHHHHcccCCeEEEEecC
Q 047371 137 SSHEIRGISETEEYDVVIANILLNPL---PQLADHIVSYAKPGAVVGISGI 184 (222)
Q Consensus 137 ~~~~~~~~~~~~~~D~v~~~~~~~~~---~~~l~~~~~~LkpgG~l~~~~~ 184 (222)
++++||+|++...++++ ..+++++.++|||||.+++.++
T Consensus 183 ---------~~~~FD~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~ 224 (340)
T PLN02244 183 ---------EDGQFDLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVTW 224 (340)
T ss_pred ---------CCCCccEEEECCchhccCCHHHHHHHHHHHcCCCcEEEEEEe
Confidence 57889999998877664 5689999999999999998643
No 31
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.60 E-value=1.3e-13 Score=116.82 Aligned_cols=166 Identities=22% Similarity=0.214 Sum_probs=114.5
Q ss_pred ceeEEeCCCcccccCCcchhHHHHHHHHhhh-cC-CCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHH
Q 047371 26 ATNIILNPGLAFGTGEHATTKLCLLLLQSLI-KG-GELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAA 102 (222)
Q Consensus 26 ~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~-~~-~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~ 102 (222)
...|.++|+.-. ...++..++...+.... .+ +.+|||+|||+|.+++.++.. +..+++|+|+++.+++.|++|+.
T Consensus 82 g~~f~v~~~vli--Pr~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~ 159 (284)
T TIGR00536 82 GLEFFVNEHVLI--PRPETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAE 159 (284)
T ss_pred CeEEEECCCCcC--CCCccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH
Confidence 356788887443 23345555555554432 22 368999999999999998875 45799999999999999999998
Q ss_pred hcCCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc---------------------
Q 047371 103 LNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP--------------------- 161 (222)
Q Consensus 103 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~--------------------- 161 (222)
.+++. .++.+...|..... +.++||+|++|||+..
T Consensus 160 ~~~~~-~~v~~~~~d~~~~~-----------------------~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~g 215 (284)
T TIGR00536 160 KNQLE-HRVEFIQSNLFEPL-----------------------AGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVG 215 (284)
T ss_pred HcCCC-CcEEEEECchhccC-----------------------cCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcC
Confidence 88875 35888877653210 2347999999988632
Q ss_pred -------HHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHh--hhhcceec--ccCCceEeeccc
Q 047371 162 -------LPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSE--FLEDILVS--EKDDWRCVSGTK 218 (222)
Q Consensus 162 -------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~w~~~~~~k 218 (222)
+..+++.+.++|+|||++++. +...+...+.+.+.. .|..++.. -.|.-+++.+++
T Consensus 216 g~dgl~~~~~ii~~a~~~L~~gG~l~~e-~g~~q~~~~~~~~~~~~~~~~~~~~~D~~g~~R~~~~~~ 282 (284)
T TIGR00536 216 GDDGLNILRQIIELAPDYLKPNGFLVCE-IGNWQQKSLKELLRIKFTWYDVENGRDLNGKERVVLGFY 282 (284)
T ss_pred CCcHHHHHHHHHHHHHHhccCCCEEEEE-ECccHHHHHHHHHHhcCCCceeEEecCCCCCceEEEEEe
Confidence 345789999999999998875 566777778777763 24333332 224445554443
No 32
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.60 E-value=4.1e-14 Score=116.82 Aligned_cols=113 Identities=19% Similarity=0.219 Sum_probs=88.0
Q ss_pred HHHHHHhhhcCCCcEEEEccCCCHHHHHHHHh---CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccc
Q 047371 48 CLLLLQSLIKGGELFLDYGTGSGILGIAAIKF---GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTAS 124 (222)
Q Consensus 48 ~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~---~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~ 124 (222)
+..+.....+++.+|||+|||+|..+..+++. +..+++|+|+++.+++.|++++...+.. .++++...+...+
T Consensus 43 ~~~l~~~~~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~-~~v~~~~~d~~~~--- 118 (239)
T TIGR00740 43 IGMLAERFVTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSE-IPVEILCNDIRHV--- 118 (239)
T ss_pred HHHHHHHhCCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCC-CCeEEEECChhhC---
Confidence 33333334567889999999999999988864 4578999999999999999988765543 3678888777554
Q ss_pred cccccccchhccccccccCCCCCCCeeEEEeccccccH-----HHHHHHHHHcccCCeEEEEecCC
Q 047371 125 MNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPL-----PQLADHIVSYAKPGAVVGISGIL 185 (222)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~-----~~~l~~~~~~LkpgG~l~~~~~~ 185 (222)
+...+|+|+++..+++. ..+++++.+.|||||.+++++..
T Consensus 119 ---------------------~~~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~ 163 (239)
T TIGR00740 119 ---------------------EIKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKF 163 (239)
T ss_pred ---------------------CCCCCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecc
Confidence 33458999998877663 45899999999999999997653
No 33
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.59 E-value=8.6e-15 Score=107.34 Aligned_cols=103 Identities=28% Similarity=0.504 Sum_probs=83.8
Q ss_pred CCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcccc
Q 047371 59 GELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSS 138 (222)
Q Consensus 59 ~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (222)
|.+|||+|||+|.++..+++.+..+++|+|+++..++.|+.++...++. .++++...|..... ..
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~-~~~~~~~~D~~~~~-------~~------- 65 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLD-DRVEVIVGDARDLP-------EP------- 65 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTT-TTEEEEESHHHHHH-------HT-------
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCC-ceEEEEECchhhch-------hh-------
Confidence 5689999999999999988876689999999999999999999988875 47888888765442 01
Q ss_pred ccccCCCCCCCeeEEEecccccc-----------HHHHHHHHHHcccCCeEEEEe
Q 047371 139 HEIRGISETEEYDVVIANILLNP-----------LPQLADHIVSYAKPGAVVGIS 182 (222)
Q Consensus 139 ~~~~~~~~~~~~D~v~~~~~~~~-----------~~~~l~~~~~~LkpgG~l~~~ 182 (222)
...++||+|++|+|+.. +..+++++.++|||||.+++.
T Consensus 66 ------~~~~~~D~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~ 114 (117)
T PF13659_consen 66 ------LPDGKFDLIVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFI 114 (117)
T ss_dssp ------CTTT-EEEEEE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ------ccCceeEEEEECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 15788999999999864 356799999999999999874
No 34
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.59 E-value=4.1e-14 Score=118.41 Aligned_cols=109 Identities=20% Similarity=0.223 Sum_probs=86.6
Q ss_pred hcCCCcEEEEccCCCHHHHHHHHh-C-CCEEEEEeCChHHHHHHHHHHHh--cCCCCCceeEEecCCccccccccccccc
Q 047371 56 IKGGELFLDYGTGSGILGIAAIKF-G-AAMFVGVDIDPQVIKSAHQNAAL--NNIGPKKIKLHLVPDRTFTASMNERVDG 131 (222)
Q Consensus 56 ~~~~~~vLD~G~G~G~~~~~la~~-~-~~~v~gvD~s~~~l~~a~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 131 (222)
++++.+|||+|||+|.++..+++. + ..+|+|+|+|+.|++.|+++... ... ..++.+...+...++.
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~-~~~i~~~~~d~~~lp~-------- 141 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSC-YKNIEWIEGDATDLPF-------- 141 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhcc-CCCeEEEEcccccCCC--------
Confidence 457889999999999999988864 3 46999999999999999876532 111 1378888888766543
Q ss_pred chhccccccccCCCCCCCeeEEEecccccc---HHHHHHHHHHcccCCeEEEEecCCCC
Q 047371 132 VVEYLSSHEIRGISETEEYDVVIANILLNP---LPQLADHIVSYAKPGAVVGISGILSE 187 (222)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~ 187 (222)
++++||+|+++..+++ ...+++++.++|||||.+++.++...
T Consensus 142 --------------~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~ 186 (261)
T PLN02233 142 --------------DDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKS 186 (261)
T ss_pred --------------CCCCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCCC
Confidence 6778999999887765 45689999999999999999766543
No 35
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.59 E-value=2.3e-14 Score=115.58 Aligned_cols=122 Identities=13% Similarity=0.139 Sum_probs=95.9
Q ss_pred hcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCC-cccccccccccccch
Q 047371 56 IKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPD-RTFTASMNERVDGVV 133 (222)
Q Consensus 56 ~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~ 133 (222)
.+++.+|||+|||+|..+..+++. +..+++|+|+++.+++.|++++...++. ++.+...+. +.+.. .+
T Consensus 38 ~~~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~--~v~~~~~d~~~~l~~-------~~- 107 (202)
T PRK00121 38 GNDAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLT--NLRLLCGDAVEVLLD-------MF- 107 (202)
T ss_pred CCCCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCC--CEEEEecCHHHHHHH-------Hc-
Confidence 346789999999999999988865 5578999999999999999998877764 788888876 43320 01
Q ss_pred hccccccccCCCCCCCeeEEEecccccc-----------HHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHhh
Q 047371 134 EYLSSHEIRGISETEEYDVVIANILLNP-----------LPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSEF 199 (222)
Q Consensus 134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~-----------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~ 199 (222)
+.++||+|+++.+..+ ...+++++.++|||||.+++.+.......++.+.++..
T Consensus 108 ------------~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~ 172 (202)
T PRK00121 108 ------------PDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAE 172 (202)
T ss_pred ------------CccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhC
Confidence 4678999999754321 45789999999999999999876666677777777664
No 36
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.59 E-value=1.5e-13 Score=114.33 Aligned_cols=159 Identities=20% Similarity=0.220 Sum_probs=106.9
Q ss_pred eeEEeCCCcccccCCcchhHHHHHHHHhhh--cCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHh
Q 047371 27 TNIILNPGLAFGTGEHATTKLCLLLLQSLI--KGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAAL 103 (222)
Q Consensus 27 ~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~--~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~ 103 (222)
..+.++|+..+ ...++..++..++.... .++.+|||+|||+|.+++.+++. +..+++|+|+|+.+++.|++|+..
T Consensus 55 ~~~~v~~~vf~--pr~~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~ 132 (251)
T TIGR03704 55 LRIAVDPGVFV--PRRRTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLAD 132 (251)
T ss_pred eEEEECCCCcC--CCccHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH
Confidence 56788887544 23344444444433221 12458999999999999998864 456899999999999999999876
Q ss_pred cCCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc----------------------
Q 047371 104 NNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP---------------------- 161 (222)
Q Consensus 104 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~---------------------- 161 (222)
++. ++...|...... . . ..++||+|++|||+..
T Consensus 133 ~~~-----~~~~~D~~~~l~-------~-----------~--~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~g 187 (251)
T TIGR03704 133 AGG-----TVHEGDLYDALP-------T-----------A--LRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDG 187 (251)
T ss_pred cCC-----EEEEeechhhcc-------h-----------h--cCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcC
Confidence 652 355555432100 0 0 1357999999999742
Q ss_pred -------HHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHhh-hhcceecccCCceE
Q 047371 162 -------LPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSEF-LEDILVSEKDDWRC 213 (222)
Q Consensus 162 -------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~w~~ 213 (222)
+.++++.+.++|||||.+++. ....+..++...+.+. +...-..+.+-|..
T Consensus 188 g~dgl~~~~~i~~~a~~~L~~gG~l~l~-~~~~~~~~v~~~l~~~g~~~~~~~~~~~~~~ 246 (251)
T TIGR03704 188 GADGLDVLRRVAAGAPDWLAPGGHLLVE-TSERQAPLAVEAFARAGLIARVASSEELYAT 246 (251)
T ss_pred CCcHHHHHHHHHHHHHHhcCCCCEEEEE-ECcchHHHHHHHHHHCCCCceeeEcccccce
Confidence 236788889999999999986 4566778888888764 43333333333433
No 37
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.58 E-value=2.1e-13 Score=112.85 Aligned_cols=134 Identities=24% Similarity=0.281 Sum_probs=98.5
Q ss_pred hHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccccc
Q 047371 45 TKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTA 123 (222)
Q Consensus 45 ~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~ 123 (222)
..++..++......+.+|||+|||+|.++..++.. +..+++|+|+++.+++.|++++...++. ++.+...+.....
T Consensus 74 ~~l~~~~l~~~~~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~--~~~~~~~d~~~~~- 150 (251)
T TIGR03534 74 EELVEAALERLKKGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLD--NVTFLQSDWFEPL- 150 (251)
T ss_pred HHHHHHHHHhcccCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC--eEEEEECchhccC-
Confidence 33333333333334568999999999999998875 5579999999999999999999887774 6778777653310
Q ss_pred ccccccccchhccccccccCCCCCCCeeEEEecccccc-----------------------------HHHHHHHHHHccc
Q 047371 124 SMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP-----------------------------LPQLADHIVSYAK 174 (222)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~-----------------------------~~~~l~~~~~~Lk 174 (222)
+.++||+|++|+|+.. +..+++.+.+.|+
T Consensus 151 ----------------------~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~ 208 (251)
T TIGR03534 151 ----------------------PGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLK 208 (251)
T ss_pred ----------------------cCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcc
Confidence 4678999999998753 1246789999999
Q ss_pred CCeEEEEecCCCCcHHHHHHHHHhh-hhcce
Q 047371 175 PGAVVGISGILSEQLPRIINRYSEF-LEDIL 204 (222)
Q Consensus 175 pgG~l~~~~~~~~~~~~~~~~~~~~-~~~~~ 204 (222)
|||.+++. ....+..++.+.+.+. |..++
T Consensus 209 ~gG~~~~~-~~~~~~~~~~~~l~~~gf~~v~ 238 (251)
T TIGR03534 209 PGGWLLLE-IGYDQGEAVRALFEAAGFADVE 238 (251)
T ss_pred cCCEEEEE-ECccHHHHHHHHHHhCCCCceE
Confidence 99999986 3445566677777653 44433
No 38
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.57 E-value=5.5e-14 Score=114.34 Aligned_cols=125 Identities=12% Similarity=0.211 Sum_probs=104.0
Q ss_pred CCCcEEEEccCCCHHHHHHHHh-CC------CEEEEEeCChHHHHHHHHHHHhcCCCCC-ceeEEecCCccccccccccc
Q 047371 58 GGELFLDYGTGSGILGIAAIKF-GA------AMFVGVDIDPQVIKSAHQNAALNNIGPK-KIKLHLVPDRTFTASMNERV 129 (222)
Q Consensus 58 ~~~~vLD~G~G~G~~~~~la~~-~~------~~v~gvD~s~~~l~~a~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~ 129 (222)
+++++||++||+|.++..+.+. +. .+|+.+|+||.|++.++++....++..+ ++.+...|++.+++
T Consensus 100 ~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpF------ 173 (296)
T KOG1540|consen 100 KGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPF------ 173 (296)
T ss_pred CCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCC------
Confidence 4689999999999999987764 33 7899999999999999999977777643 38888889988876
Q ss_pred ccchhccccccccCCCCCCCeeEEEeccccc---cHHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHhh-hhcce
Q 047371 130 DGVVEYLSSHEIRGISETEEYDVVIANILLN---PLPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSEF-LEDIL 204 (222)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~---~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~-~~~~~ 204 (222)
++.+||...+...+. +..+.+++++|.|||||++.+.++...+.+-+...+..+ |+.++
T Consensus 174 ----------------dd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~Vlp 236 (296)
T KOG1540|consen 174 ----------------DDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFDVLP 236 (296)
T ss_pred ----------------CCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhhhhc
Confidence 889999999876654 477899999999999999999888777777888888777 55544
No 39
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.57 E-value=1.1e-13 Score=102.00 Aligned_cols=104 Identities=18% Similarity=0.273 Sum_probs=84.0
Q ss_pred hcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371 56 IKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE 134 (222)
Q Consensus 56 ~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 134 (222)
..++.+|||+|||+|..+..+++. +..+++++|+++.+++.+++++...++. ++.+...+......
T Consensus 17 ~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~----------- 83 (124)
T TIGR02469 17 LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVS--NIVIVEGDAPEALE----------- 83 (124)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCC--ceEEEeccccccCh-----------
Confidence 346789999999999999998875 5579999999999999999998877664 66776665432100
Q ss_pred ccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEe
Q 047371 135 YLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGIS 182 (222)
Q Consensus 135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 182 (222)
...++||+|++......+..+++.+.+.|||||.+++.
T Consensus 84 ----------~~~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 84 ----------DSLPEPDRVFIGGSGGLLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred ----------hhcCCCCEEEECCcchhHHHHHHHHHHHcCCCCEEEEE
Confidence 02357999999877777788999999999999999986
No 40
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.57 E-value=4.8e-14 Score=113.24 Aligned_cols=98 Identities=23% Similarity=0.308 Sum_probs=80.3
Q ss_pred CCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccc
Q 047371 58 GGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLS 137 (222)
Q Consensus 58 ~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (222)
++.+|||+|||+|..+..+++.+ .+|+|+|+|+.+++.++++....++. ++++...|...+.
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~g-~~V~gvD~S~~~i~~a~~~~~~~~~~--~v~~~~~d~~~~~--------------- 91 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAANG-FDVTAWDKNPMSIANLERIKAAENLD--NLHTAVVDLNNLT--------------- 91 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHHcCCC--cceEEecChhhCC---------------
Confidence 57899999999999999999875 58999999999999999988877764 5777666654332
Q ss_pred cccccCCCCCCCeeEEEecccccc-----HHHHHHHHHHcccCCeEEEE
Q 047371 138 SHEIRGISETEEYDVVIANILLNP-----LPQLADHIVSYAKPGAVVGI 181 (222)
Q Consensus 138 ~~~~~~~~~~~~~D~v~~~~~~~~-----~~~~l~~~~~~LkpgG~l~~ 181 (222)
..++||+|+++..+++ ...+++.+.++|||||++++
T Consensus 92 --------~~~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 92 --------FDGEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred --------cCCCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 2456999999887764 34689999999999999654
No 41
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.56 E-value=3.7e-14 Score=113.74 Aligned_cols=97 Identities=21% Similarity=0.261 Sum_probs=76.7
Q ss_pred CCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccc
Q 047371 58 GGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLS 137 (222)
Q Consensus 58 ~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (222)
++.+|||+|||+|..+..+++.+ .+|+|+|+++.+++.+++++...++. +.....+.....
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~g-~~V~~iD~s~~~l~~a~~~~~~~~~~---v~~~~~d~~~~~--------------- 90 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLAG-YDVRAWDHNPASIASVLDMKARENLP---LRTDAYDINAAA--------------- 90 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHCC-CeEEEEECCHHHHHHHHHHHHHhCCC---ceeEeccchhcc---------------
Confidence 46799999999999999999876 58999999999999999888766652 445444443221
Q ss_pred cccccCCCCCCCeeEEEeccccccH-----HHHHHHHHHcccCCeEEEE
Q 047371 138 SHEIRGISETEEYDVVIANILLNPL-----PQLADHIVSYAKPGAVVGI 181 (222)
Q Consensus 138 ~~~~~~~~~~~~~D~v~~~~~~~~~-----~~~l~~~~~~LkpgG~l~~ 181 (222)
..++||+|+++.++++. ..+++.+.++|||||++++
T Consensus 91 --------~~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli 131 (195)
T TIGR00477 91 --------LNEDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLI 131 (195)
T ss_pred --------ccCCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 23579999998877653 4689999999999999555
No 42
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.56 E-value=1.2e-13 Score=114.66 Aligned_cols=110 Identities=19% Similarity=0.300 Sum_probs=87.1
Q ss_pred CCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccc
Q 047371 58 GGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLS 137 (222)
Q Consensus 58 ~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (222)
++.+|||+|||+|.++..++..+ .+++++|+|+.+++.|+++.. ...+...|.+.++.
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~-~~v~~~D~s~~~l~~a~~~~~-------~~~~~~~d~~~~~~-------------- 99 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRERG-SQVTALDLSPPMLAQARQKDA-------ADHYLAGDIESLPL-------------- 99 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHcC-CeEEEEECCHHHHHHHHhhCC-------CCCEEEcCcccCcC--------------
Confidence 46789999999999999888765 689999999999999987642 12355666554422
Q ss_pred cccccCCCCCCCeeEEEecccccc---HHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHH
Q 047371 138 SHEIRGISETEEYDVVIANILLNP---LPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYS 197 (222)
Q Consensus 138 ~~~~~~~~~~~~~D~v~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~ 197 (222)
++++||+|+++.++++ ...++.++.++|||||.++++.+......++.+.+.
T Consensus 100 --------~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~el~~~~~ 154 (251)
T PRK10258 100 --------ATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQGSLPELHQAWQ 154 (251)
T ss_pred --------CCCcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCCCchHHHHHHHH
Confidence 5678999999988765 456899999999999999998887777766666543
No 43
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=2.9e-13 Score=114.27 Aligned_cols=143 Identities=24% Similarity=0.312 Sum_probs=100.6
Q ss_pred eeEEeCCCcccccCCcchhHHHHHHHHhhhcCCC-cEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhc
Q 047371 27 TNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGE-LFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALN 104 (222)
Q Consensus 27 ~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~-~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~ 104 (222)
..+.++++--. ....+..++..++ ....... +|||+|||+|.+++.++.. +..+|+|+|+|+.+++.|++|+..+
T Consensus 81 l~~~v~~~vli--Pr~dTe~Lve~~l-~~~~~~~~~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~ 157 (280)
T COG2890 81 LRFKVDEGVLI--PRPDTELLVEAAL-ALLLQLDKRILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERN 157 (280)
T ss_pred eeeeeCCCcee--cCCchHHHHHHHH-HhhhhcCCcEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHc
Confidence 45566666443 1223444444433 2222233 7999999999999999876 4569999999999999999999999
Q ss_pred CCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc-----------------------
Q 047371 105 NIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP----------------------- 161 (222)
Q Consensus 105 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~----------------------- 161 (222)
++. ++.+... +.+.. -.++||+|++||||-.
T Consensus 158 ~l~--~~~~~~~--dlf~~----------------------~~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~ 211 (280)
T COG2890 158 GLV--RVLVVQS--DLFEP----------------------LRGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGG 211 (280)
T ss_pred CCc--cEEEEee--ecccc----------------------cCCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCc
Confidence 873 5444443 22311 2348999999999622
Q ss_pred -----HHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHhh
Q 047371 162 -----LPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSEF 199 (222)
Q Consensus 162 -----~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~ 199 (222)
+..++.++.+.|+|||.+++. ....+...+.+.+...
T Consensus 212 dGl~~~~~i~~~a~~~l~~~g~l~le-~g~~q~~~v~~~~~~~ 253 (280)
T COG2890 212 DGLEVYRRILGEAPDILKPGGVLILE-IGLTQGEAVKALFEDT 253 (280)
T ss_pred cHHHHHHHHHHhhHHHcCCCcEEEEE-ECCCcHHHHHHHHHhc
Confidence 345789999999999988885 4566777777777665
No 44
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.55 E-value=3.2e-13 Score=105.84 Aligned_cols=119 Identities=14% Similarity=0.207 Sum_probs=103.5
Q ss_pred hcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371 56 IKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE 134 (222)
Q Consensus 56 ~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 134 (222)
..++++++|+|||+|++++.++.. +..+++++|-++++++..++|+.+.+++ |+.+..+++...-.
T Consensus 32 ~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~--n~~vv~g~Ap~~L~----------- 98 (187)
T COG2242 32 PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVD--NLEVVEGDAPEALP----------- 98 (187)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCC--cEEEEeccchHhhc-----------
Confidence 568999999999999999998854 5689999999999999999999999965 99999988754421
Q ss_pred ccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHhh
Q 047371 135 YLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSEF 199 (222)
Q Consensus 135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~ 199 (222)
+..++|.|++... ..+..+++.+...|||||.++.....-+......+.+++.
T Consensus 99 -----------~~~~~daiFIGGg-~~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~ 151 (187)
T COG2242 99 -----------DLPSPDAIFIGGG-GNIEEILEAAWERLKPGGRLVANAITLETLAKALEALEQL 151 (187)
T ss_pred -----------CCCCCCEEEECCC-CCHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHc
Confidence 2337999999888 6789999999999999999999988888888888888876
No 45
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.55 E-value=3.9e-14 Score=121.57 Aligned_cols=103 Identities=21% Similarity=0.379 Sum_probs=84.2
Q ss_pred CCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccc
Q 047371 58 GGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLS 137 (222)
Q Consensus 58 ~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (222)
++.+|||+|||+|.++..+++.+ .+|+|+|.++.+++.|+.+....+.. .++.+...+.+.+..
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g-~~V~GID~s~~~i~~Ar~~~~~~~~~-~~i~~~~~dae~l~~-------------- 194 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMG-ATVTGVDAVDKNVKIARLHADMDPVT-STIEYLCTTAEKLAD-------------- 194 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHhcCcc-cceeEEecCHHHhhh--------------
Confidence 46689999999999999998765 68999999999999999886654442 367788877655422
Q ss_pred cccccCCCCCCCeeEEEecccccc---HHHHHHHHHHcccCCeEEEEecC
Q 047371 138 SHEIRGISETEEYDVVIANILLNP---LPQLADHIVSYAKPGAVVGISGI 184 (222)
Q Consensus 138 ~~~~~~~~~~~~~D~v~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~ 184 (222)
..++||+|++..++++ ...+++++.++|||||.++++++
T Consensus 195 --------~~~~FD~Vi~~~vLeHv~d~~~~L~~l~r~LkPGG~liist~ 236 (322)
T PLN02396 195 --------EGRKFDAVLSLEVIEHVANPAEFCKSLSALTIPNGATVLSTI 236 (322)
T ss_pred --------ccCCCCEEEEhhHHHhcCCHHHHHHHHHHHcCCCcEEEEEEC
Confidence 4578999999888876 45689999999999999998754
No 46
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.54 E-value=8e-14 Score=116.22 Aligned_cols=109 Identities=18% Similarity=0.295 Sum_probs=87.0
Q ss_pred HHHhhhcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccc
Q 047371 51 LLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVD 130 (222)
Q Consensus 51 ~l~~~~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 130 (222)
++..+..++.+|||+|||+|.++..+++.+ .+|+|+|+++.+++.|+++....++. .++.+...+...+..
T Consensus 37 ~l~~l~~~~~~vLDiGcG~G~~a~~la~~g-~~v~~vD~s~~~l~~a~~~~~~~g~~-~~v~~~~~d~~~l~~------- 107 (255)
T PRK11036 37 LLAELPPRPLRVLDAGGGEGQTAIKLAELG-HQVILCDLSAEMIQRAKQAAEAKGVS-DNMQFIHCAAQDIAQ------- 107 (255)
T ss_pred HHHhcCCCCCEEEEeCCCchHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcCCc-cceEEEEcCHHHHhh-------
Confidence 333333456899999999999999999875 68999999999999999998877764 467787776644310
Q ss_pred cchhccccccccCCCCCCCeeEEEeccccccH---HHHHHHHHHcccCCeEEEEe
Q 047371 131 GVVEYLSSHEIRGISETEEYDVVIANILLNPL---PQLADHIVSYAKPGAVVGIS 182 (222)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~---~~~l~~~~~~LkpgG~l~~~ 182 (222)
. ..++||+|+++.+++++ ..+++.+.++|||||++++.
T Consensus 108 -~-------------~~~~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~ 148 (255)
T PRK11036 108 -H-------------LETPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLM 148 (255)
T ss_pred -h-------------cCCCCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEE
Confidence 0 45789999999887653 56899999999999999874
No 47
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.54 E-value=1.1e-13 Score=115.96 Aligned_cols=111 Identities=17% Similarity=0.163 Sum_probs=85.3
Q ss_pred HHHHHhh-hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccccccccc
Q 047371 49 LLLLQSL-IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNE 127 (222)
Q Consensus 49 ~~~l~~~-~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 127 (222)
..++... ++++.+|||+|||+|..+..+++....+|+|+|+++.+++.|+++... ..++.+...|......
T Consensus 42 ~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~----~~~i~~~~~D~~~~~~---- 113 (263)
T PTZ00098 42 TKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD----KNKIEFEANDILKKDF---- 113 (263)
T ss_pred HHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc----CCceEEEECCcccCCC----
Confidence 3344333 567899999999999999888765446999999999999999987643 1367787777654322
Q ss_pred ccccchhccccccccCCCCCCCeeEEEecccccc-----HHHHHHHHHHcccCCeEEEEecCC
Q 047371 128 RVDGVVEYLSSHEIRGISETEEYDVVIANILLNP-----LPQLADHIVSYAKPGAVVGISGIL 185 (222)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~~ 185 (222)
++++||+|++...+.+ ...+++++.++|||||.+++.+..
T Consensus 114 ------------------~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~ 158 (263)
T PTZ00098 114 ------------------PENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYC 158 (263)
T ss_pred ------------------CCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 5678999999665433 346899999999999999997653
No 48
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.54 E-value=1.5e-14 Score=118.21 Aligned_cols=101 Identities=20% Similarity=0.372 Sum_probs=81.3
Q ss_pred CCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCc----eeEEecCCcccccccccccccchh
Q 047371 59 GELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKK----IKLHLVPDRTFTASMNERVDGVVE 134 (222)
Q Consensus 59 ~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~----v~~~~~~~~~~~~~~~~~~~~~~~ 134 (222)
|++|||+|||+|.++..|++.+ ++|+|+|.++.+++.|++..........+ +.+...+.+..
T Consensus 90 g~~ilDvGCGgGLLSepLArlg-a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~------------- 155 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLG-AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL------------- 155 (282)
T ss_pred CceEEEeccCccccchhhHhhC-CeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc-------------
Confidence 4789999999999999999997 79999999999999999986555544332 33444443332
Q ss_pred ccccccccCCCCCCCeeEEEeccccccH---HHHHHHHHHcccCCeEEEEecCC
Q 047371 135 YLSSHEIRGISETEEYDVVIANILLNPL---PQLADHIVSYAKPGAVVGISGIL 185 (222)
Q Consensus 135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~~---~~~l~~~~~~LkpgG~l~~~~~~ 185 (222)
.++||.|+|..+++|+ .++++.+.+.|||+|.++++++.
T Consensus 156 ------------~~~fDaVvcsevleHV~dp~~~l~~l~~~lkP~G~lfittin 197 (282)
T KOG1270|consen 156 ------------TGKFDAVVCSEVLEHVKDPQEFLNCLSALLKPNGRLFITTIN 197 (282)
T ss_pred ------------ccccceeeeHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehh
Confidence 3459999999999885 45899999999999999997653
No 49
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.53 E-value=4.3e-13 Score=121.78 Aligned_cols=116 Identities=20% Similarity=0.239 Sum_probs=91.5
Q ss_pred CCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccc
Q 047371 59 GELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLS 137 (222)
Q Consensus 59 ~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (222)
+.+|||+|||+|.+++.++.. +..+++|+|+|+.+++.|++++..+++. .++.+...|.... +
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~-~~v~~~~~D~~~~----------~----- 202 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVT-DRIQIIHSNWFEN----------I----- 202 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCc-cceeeeecchhhh----------C-----
Confidence 468999999999999988764 6679999999999999999999888775 4677777664221 0
Q ss_pred cccccCCCCCCCeeEEEecccccc-----------------------------HHHHHHHHHHcccCCeEEEEecCCCCc
Q 047371 138 SHEIRGISETEEYDVVIANILLNP-----------------------------LPQLADHIVSYAKPGAVVGISGILSEQ 188 (222)
Q Consensus 138 ~~~~~~~~~~~~~D~v~~~~~~~~-----------------------------~~~~l~~~~~~LkpgG~l~~~~~~~~~ 188 (222)
+.++||+|++|||+.. +..+++.+.++|+|||.+++. +...+
T Consensus 203 --------~~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lE-ig~~q 273 (506)
T PRK01544 203 --------EKQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILE-IGFKQ 273 (506)
T ss_pred --------cCCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEE-ECCch
Confidence 3457999999998532 334678899999999999885 66777
Q ss_pred HHHHHHHHHhh
Q 047371 189 LPRIINRYSEF 199 (222)
Q Consensus 189 ~~~~~~~~~~~ 199 (222)
...+.+.+...
T Consensus 274 ~~~v~~~~~~~ 284 (506)
T PRK01544 274 EEAVTQIFLDH 284 (506)
T ss_pred HHHHHHHHHhc
Confidence 78888877664
No 50
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.53 E-value=3.3e-13 Score=115.92 Aligned_cols=144 Identities=16% Similarity=0.191 Sum_probs=107.6
Q ss_pred eeEEeCCCcccccCCcchhHHHHHHHHhhh--cCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhc
Q 047371 27 TNIILNPGLAFGTGEHATTKLCLLLLQSLI--KGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALN 104 (222)
Q Consensus 27 ~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~--~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~ 104 (222)
..+.++|...|.++...... +.+.+...+ .++.+|||+|||+|.+++.+++.+ .+|+|+|+++.+++.|++++..+
T Consensus 141 ~~~~~~~~sF~Q~n~~~~~~-l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~A~~n~~~~ 218 (315)
T PRK03522 141 VPLFIRPQSFFQTNPAVAAQ-LYATARDWVRELPPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIACAKQSAAEL 218 (315)
T ss_pred EEEEECCCeeeecCHHHHHH-HHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHc
Confidence 46777877766554443433 333333332 257899999999999999999875 79999999999999999999988
Q ss_pred CCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecC
Q 047371 105 NIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGI 184 (222)
Q Consensus 105 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 184 (222)
++. ++++...|...+.. ...+.||+|++|||...+...+..+...++|++.+|++|.
T Consensus 219 ~l~--~v~~~~~D~~~~~~---------------------~~~~~~D~Vv~dPPr~G~~~~~~~~l~~~~~~~ivyvsc~ 275 (315)
T PRK03522 219 GLT--NVQFQALDSTQFAT---------------------AQGEVPDLVLVNPPRRGIGKELCDYLSQMAPRFILYSSCN 275 (315)
T ss_pred CCC--ceEEEEcCHHHHHH---------------------hcCCCCeEEEECCCCCCccHHHHHHHHHcCCCeEEEEECC
Confidence 874 78898888754321 0234699999999987654444444455789999999999
Q ss_pred CCCcHHHHHHH
Q 047371 185 LSEQLPRIINR 195 (222)
Q Consensus 185 ~~~~~~~~~~~ 195 (222)
+....+++...
T Consensus 276 p~t~~rd~~~l 286 (315)
T PRK03522 276 AQTMAKDLAHL 286 (315)
T ss_pred cccchhHHhhc
Confidence 98888888665
No 51
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.52 E-value=4.3e-13 Score=108.38 Aligned_cols=101 Identities=19% Similarity=0.186 Sum_probs=80.7
Q ss_pred hcCCCcEEEEccCCCHHHHHHHHh--CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371 56 IKGGELFLDYGTGSGILGIAAIKF--GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV 133 (222)
Q Consensus 56 ~~~~~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 133 (222)
.+++.+|||+|||+|..+..+++. ...+|+++|+++.+++.|++++..+++. .++.+...|.....
T Consensus 70 ~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~-~~v~~~~~d~~~~~----------- 137 (205)
T PRK13944 70 PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYW-GVVEVYHGDGKRGL----------- 137 (205)
T ss_pred CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEEECCcccCC-----------
Confidence 457889999999999999988875 2468999999999999999999887764 35778877764321
Q ss_pred hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEe
Q 047371 134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGIS 182 (222)
Q Consensus 134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 182 (222)
....+||+|+++....++ .+.+.+.|+|||.+++.
T Consensus 138 -----------~~~~~fD~Ii~~~~~~~~---~~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 138 -----------EKHAPFDAIIVTAAASTI---PSALVRQLKDGGVLVIP 172 (205)
T ss_pred -----------ccCCCccEEEEccCcchh---hHHHHHhcCcCcEEEEE
Confidence 135689999998876544 46788999999999884
No 52
>PRK14968 putative methyltransferase; Provisional
Probab=99.52 E-value=8.5e-13 Score=104.43 Aligned_cols=119 Identities=29% Similarity=0.409 Sum_probs=90.5
Q ss_pred cCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcc
Q 047371 57 KGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYL 136 (222)
Q Consensus 57 ~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (222)
.++.+|||+|||+|.++..+++. ..+++++|+++.+++.+++++..++....++.+...|.... .
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~----------~---- 86 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN-GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP----------F---- 86 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh-cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc----------c----
Confidence 57889999999999999998887 47999999999999999999887776522266665554221 0
Q ss_pred ccccccCCCCCCCeeEEEecccccc------------------------HHHHHHHHHHcccCCeEEEEecCCCCcHHHH
Q 047371 137 SSHEIRGISETEEYDVVIANILLNP------------------------LPQLADHIVSYAKPGAVVGISGILSEQLPRI 192 (222)
Q Consensus 137 ~~~~~~~~~~~~~~D~v~~~~~~~~------------------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~ 192 (222)
..++||+|++|+++.. +..+++++.++|||||.+++.........++
T Consensus 87 ---------~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l 157 (188)
T PRK14968 87 ---------RGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEV 157 (188)
T ss_pred ---------cccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHH
Confidence 3347999999988643 3457899999999999988754434445667
Q ss_pred HHHHHhh
Q 047371 193 INRYSEF 199 (222)
Q Consensus 193 ~~~~~~~ 199 (222)
.+.+.+.
T Consensus 158 ~~~~~~~ 164 (188)
T PRK14968 158 LEYLEKL 164 (188)
T ss_pred HHHHHHC
Confidence 7776654
No 53
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.52 E-value=3.4e-13 Score=109.72 Aligned_cols=100 Identities=15% Similarity=0.227 Sum_probs=80.7
Q ss_pred hcCCCcEEEEccCCCHHHHHHHHhC--CCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371 56 IKGGELFLDYGTGSGILGIAAIKFG--AAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV 133 (222)
Q Consensus 56 ~~~~~~vLD~G~G~G~~~~~la~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 133 (222)
++++.+|||+|||+|.++..+++.. ..+|+++|+++.+++.|++++...++. ++.+...|.....
T Consensus 75 ~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~--~v~~~~~d~~~~~----------- 141 (215)
T TIGR00080 75 LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLD--NVIVIVGDGTQGW----------- 141 (215)
T ss_pred CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCC--CeEEEECCcccCC-----------
Confidence 5678999999999999999988763 357999999999999999999988874 7888887764321
Q ss_pred hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEe
Q 047371 134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGIS 182 (222)
Q Consensus 134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 182 (222)
....+||+|+++.+... +.+.+.+.|+|||++++.
T Consensus 142 -----------~~~~~fD~Ii~~~~~~~---~~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 142 -----------EPLAPYDRIYVTAAGPK---IPEALIDQLKEGGILVMP 176 (215)
T ss_pred -----------cccCCCCEEEEcCCccc---ccHHHHHhcCcCcEEEEE
Confidence 13468999999876543 456678899999999885
No 54
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.52 E-value=3.5e-13 Score=126.85 Aligned_cols=139 Identities=17% Similarity=0.191 Sum_probs=106.1
Q ss_pred ceeEEeCCCcccccCCcchhHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcC
Q 047371 26 ATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNN 105 (222)
Q Consensus 26 ~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~ 105 (222)
...+.++......+|.+...+....++..+. ++++|||+|||+|.+++.++..+..+|+++|+|+.+++.|++|+..++
T Consensus 507 g~~f~v~~~~~~~tG~flDqr~~R~~~~~~~-~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng 585 (702)
T PRK11783 507 GAKLLVNLTDYLDTGLFLDHRPTRRMIGQMA-KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNG 585 (702)
T ss_pred CEEEEEEcCCCCcceECHHHHHHHHHHHHhc-CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC
Confidence 4555555554455666666666666666554 489999999999999999998877789999999999999999999998
Q ss_pred CCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc--------------HHHHHHHHHH
Q 047371 106 IGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP--------------LPQLADHIVS 171 (222)
Q Consensus 106 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~--------------~~~~l~~~~~ 171 (222)
+...++++...|...+.. . ..++||+|++|||... +.+++..+.+
T Consensus 586 ~~~~~v~~i~~D~~~~l~-------------------~--~~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~ 644 (702)
T PRK11783 586 LSGRQHRLIQADCLAWLK-------------------E--AREQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKR 644 (702)
T ss_pred CCccceEEEEccHHHHHH-------------------H--cCCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHH
Confidence 853478888887643310 0 1457999999998631 4567889999
Q ss_pred cccCCeEEEEecCCC
Q 047371 172 YAKPGAVVGISGILS 186 (222)
Q Consensus 172 ~LkpgG~l~~~~~~~ 186 (222)
+|+|||.+++++...
T Consensus 645 lL~~gG~l~~~~~~~ 659 (702)
T PRK11783 645 LLRPGGTLYFSNNKR 659 (702)
T ss_pred HcCCCCEEEEEeCCc
Confidence 999999998865433
No 55
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.52 E-value=6.2e-13 Score=106.83 Aligned_cols=122 Identities=20% Similarity=0.251 Sum_probs=95.6
Q ss_pred hcCCCcEEEEccCCCHHHHHHHHh--CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371 56 IKGGELFLDYGTGSGILGIAAIKF--GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV 133 (222)
Q Consensus 56 ~~~~~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 133 (222)
+.++.+|||+|||+|.++..+++. +..+++++|+++.+++.|++++..+++. +++.+...+......
T Consensus 38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~-~~v~~~~~d~~~~l~---------- 106 (198)
T PRK00377 38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVL-NNIVLIKGEAPEILF---------- 106 (198)
T ss_pred CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCC-CCeEEEEechhhhHh----------
Confidence 567899999999999999988764 3468999999999999999999887753 477777766543210
Q ss_pred hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHhh
Q 047371 134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSEF 199 (222)
Q Consensus 134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~ 199 (222)
. ..++||.|+++.....+..+++.+.+.|||||.+++.....++..+..+.+++.
T Consensus 107 ---------~--~~~~~D~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~ 161 (198)
T PRK00377 107 ---------T--INEKFDRIFIGGGSEKLKEIISASWEIIKKGGRIVIDAILLETVNNALSALENI 161 (198)
T ss_pred ---------h--cCCCCCEEEECCCcccHHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHHHHc
Confidence 0 235799999977656678899999999999999998655566667777777553
No 56
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.51 E-value=2.5e-13 Score=114.12 Aligned_cols=105 Identities=27% Similarity=0.442 Sum_probs=85.0
Q ss_pred hcCCCcEEEEccCCCHHHHHHHHh-C-CCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371 56 IKGGELFLDYGTGSGILGIAAIKF-G-AAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV 133 (222)
Q Consensus 56 ~~~~~~vLD~G~G~G~~~~~la~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 133 (222)
++++.+|||+|||+|..+..+++. + ..+|+|+|+++.+++.|+++....++. ++.+...+...+..
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~--~v~~~~~d~~~l~~---------- 142 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYT--NVEFRLGEIEALPV---------- 142 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCC--CEEEEEcchhhCCC----------
Confidence 567899999999999888766654 3 358999999999999999998877764 77777777654422
Q ss_pred hccccccccCCCCCCCeeEEEecccccc---HHHHHHHHHHcccCCeEEEEecC
Q 047371 134 EYLSSHEIRGISETEEYDVVIANILLNP---LPQLADHIVSYAKPGAVVGISGI 184 (222)
Q Consensus 134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~ 184 (222)
++++||+|+++..+++ ...+++++.++|||||.++++++
T Consensus 143 ------------~~~~fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~ 184 (272)
T PRK11873 143 ------------ADNSVDVIISNCVINLSPDKERVFKEAFRVLKPGGRFAISDV 184 (272)
T ss_pred ------------CCCceeEEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEe
Confidence 4668999999987765 45689999999999999999644
No 57
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.51 E-value=5e-13 Score=113.33 Aligned_cols=127 Identities=23% Similarity=0.300 Sum_probs=92.2
Q ss_pred ceeEEeCCCcccccCCc--chhHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHh
Q 047371 26 ATNIILNPGLAFGTGEH--ATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAAL 103 (222)
Q Consensus 26 ~~~~~~~~~~~f~~~~~--~~~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~ 103 (222)
...|-..|...|..... .....+...+.. . ++.+|||+|||+|..+..+++.+ .+|+|+|+|+.+++.+++++..
T Consensus 88 ~l~fy~~~~~~f~~~~~~~~~~~~~~~~~~~-~-~~~~vLDlGcG~G~~~~~la~~g-~~V~avD~s~~ai~~~~~~~~~ 164 (287)
T PRK12335 88 QLSFYCKPEDYFHKKYNLTATHSEVLEAVQT-V-KPGKALDLGCGQGRNSLYLALLG-FDVTAVDINQQSLENLQEIAEK 164 (287)
T ss_pred EEEEEEcchhhHhhhhccccccHHHHHHhhc-c-CCCCEEEeCCCCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHH
Confidence 34466667666644332 233334444432 3 35599999999999999999876 6899999999999999999887
Q ss_pred cCCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc-----HHHHHHHHHHcccCCeE
Q 047371 104 NNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP-----LPQLADHIVSYAKPGAV 178 (222)
Q Consensus 104 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~-----~~~~l~~~~~~LkpgG~ 178 (222)
.++ ++.+...|..... ..++||+|+++..+++ ...+++++.++|+|||+
T Consensus 165 ~~l---~v~~~~~D~~~~~-----------------------~~~~fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~ 218 (287)
T PRK12335 165 ENL---NIRTGLYDINSAS-----------------------IQEEYDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGY 218 (287)
T ss_pred cCC---ceEEEEechhccc-----------------------ccCCccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcE
Confidence 765 4556555543321 2567999999887764 45689999999999999
Q ss_pred EEE
Q 047371 179 VGI 181 (222)
Q Consensus 179 l~~ 181 (222)
+++
T Consensus 219 ~l~ 221 (287)
T PRK12335 219 NLI 221 (287)
T ss_pred EEE
Confidence 665
No 58
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.51 E-value=4.6e-13 Score=117.00 Aligned_cols=155 Identities=16% Similarity=0.146 Sum_probs=124.0
Q ss_pred cceeEEeCCCcccccCCcchhHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhc
Q 047371 25 QATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALN 104 (222)
Q Consensus 25 ~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~ 104 (222)
+...+.++....-.+|.+...+.....+...++ |++|||++|=||.++++++..|+.++++||.|..+++.|++|+..|
T Consensus 185 ~g~kf~v~~~~g~kTGfFlDqR~~R~~l~~~~~-GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LN 263 (393)
T COG1092 185 NGVKFLVDLVDGLKTGFFLDQRDNRRALGELAA-GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELN 263 (393)
T ss_pred CCeEEEEecCCcccceeeHHhHHHHHHHhhhcc-CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhc
Confidence 356777888877788899999999999988888 9999999999999999999999889999999999999999999999
Q ss_pred CCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEeccccc------------cHHHHHHHHHHc
Q 047371 105 NIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLN------------PLPQLADHIVSY 172 (222)
Q Consensus 105 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~------------~~~~~l~~~~~~ 172 (222)
++..+++.++..|+-.+.. .. .....+||+|+++||-. .+.+++..+.++
T Consensus 264 g~~~~~~~~i~~Dvf~~l~-------~~-----------~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~i 325 (393)
T COG1092 264 GLDGDRHRFIVGDVFKWLR-------KA-----------ERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRL 325 (393)
T ss_pred CCCccceeeehhhHHHHHH-------HH-----------HhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHH
Confidence 9987778888887643311 00 01345899999999843 266789999999
Q ss_pred ccCCeEEEEe-cCCCCcHHHHHHHHHh
Q 047371 173 AKPGAVVGIS-GILSEQLPRIINRYSE 198 (222)
Q Consensus 173 LkpgG~l~~~-~~~~~~~~~~~~~~~~ 198 (222)
|+|||.++++ |...-....+.+.+..
T Consensus 326 L~pgG~l~~~s~~~~~~~~~f~~~i~~ 352 (393)
T COG1092 326 LAPGGTLVTSSCSRHFSSDLFLEIIAR 352 (393)
T ss_pred cCCCCEEEEEecCCccCHHHHHHHHHH
Confidence 9999999885 4444455554444443
No 59
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.51 E-value=2.4e-12 Score=108.12 Aligned_cols=149 Identities=21% Similarity=0.297 Sum_probs=101.4
Q ss_pred eeEEeCCCcccccCCcchhHHHHHHHHhh--hcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHh
Q 047371 27 TNIILNPGLAFGTGEHATTKLCLLLLQSL--IKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAAL 103 (222)
Q Consensus 27 ~~~~~~~~~~f~~~~~~~~~~~~~~l~~~--~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~ 103 (222)
..+.++++... ..+.+..+.+.+... ..++.+|||+|||+|.++..++.. +..+++|+|+++.+++.|++++.
T Consensus 78 ~~~~~~~~~li---pr~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~- 153 (275)
T PRK09328 78 LDFKVSPGVLI---PRPETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK- 153 (275)
T ss_pred cEEEECCCcee---CCCCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-
Confidence 34555555321 223333344433322 346779999999999999998875 46799999999999999999987
Q ss_pred cCCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc----------------------
Q 047371 104 NNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP---------------------- 161 (222)
Q Consensus 104 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~---------------------- 161 (222)
.... .++.+...|.... . +.++||+|++|+|+..
T Consensus 154 ~~~~-~~i~~~~~d~~~~----------~-------------~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~ 209 (275)
T PRK09328 154 HGLG-ARVEFLQGDWFEP----------L-------------PGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFG 209 (275)
T ss_pred hCCC-CcEEEEEccccCc----------C-------------CCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcC
Confidence 2222 3677777765221 0 3468999999998642
Q ss_pred -------HHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHhh-hhcce
Q 047371 162 -------LPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSEF-LEDIL 204 (222)
Q Consensus 162 -------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~-~~~~~ 204 (222)
+..+++++.++|+|||++++. ....+...+.+.+... |..++
T Consensus 210 g~~g~~~~~~~~~~~~~~Lk~gG~l~~e-~g~~~~~~~~~~l~~~gf~~v~ 259 (275)
T PRK09328 210 GEDGLDFYRRIIEQAPRYLKPGGWLLLE-IGYDQGEAVRALLAAAGFADVE 259 (275)
T ss_pred CCCHHHHHHHHHHHHHHhcccCCEEEEE-ECchHHHHHHHHHHhCCCceeE
Confidence 244678888999999999985 3455566677776653 44333
No 60
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.50 E-value=2.3e-13 Score=113.42 Aligned_cols=103 Identities=20% Similarity=0.283 Sum_probs=80.4
Q ss_pred HHHHHhh-hcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccc
Q 047371 49 LLLLQSL-IKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMN 126 (222)
Q Consensus 49 ~~~l~~~-~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 126 (222)
..++..+ ..++.+|||+|||+|.++..+++. +..+++|+|+|+.+++.|++. ++.+...|...+.
T Consensus 19 ~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~---------~~~~~~~d~~~~~---- 85 (255)
T PRK14103 19 YDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER---------GVDARTGDVRDWK---- 85 (255)
T ss_pred HHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc---------CCcEEEcChhhCC----
Confidence 3444433 356789999999999999988876 457899999999999999752 3456666654331
Q ss_pred cccccchhccccccccCCCCCCCeeEEEeccccccH---HHHHHHHHHcccCCeEEEEec
Q 047371 127 ERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPL---PQLADHIVSYAKPGAVVGISG 183 (222)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~---~~~l~~~~~~LkpgG~l~~~~ 183 (222)
+.++||+|+++.+++++ ..+++++.+.|||||.+++..
T Consensus 86 -------------------~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 86 -------------------PKPDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQV 126 (255)
T ss_pred -------------------CCCCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEc
Confidence 45689999999988774 568999999999999999863
No 61
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.50 E-value=8.3e-13 Score=114.08 Aligned_cols=104 Identities=18% Similarity=0.166 Sum_probs=86.2
Q ss_pred hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371 56 IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY 135 (222)
Q Consensus 56 ~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 135 (222)
.+++++|||+|||+|.+++.++..+ .+++|+|+++.+++.|+.|+...++. ++.+...|...+..
T Consensus 180 ~~~g~~vLDp~cGtG~~lieaa~~~-~~v~g~Di~~~~~~~a~~nl~~~g~~--~i~~~~~D~~~l~~------------ 244 (329)
T TIGR01177 180 VTEGDRVLDPFCGTGGFLIEAGLMG-AKVIGCDIDWKMVAGARINLEHYGIE--DFFVKRGDATKLPL------------ 244 (329)
T ss_pred CCCcCEEEECCCCCCHHHHHHHHhC-CeEEEEcCCHHHHHHHHHHHHHhCCC--CCeEEecchhcCCc------------
Confidence 5678999999999999998877765 68999999999999999999888876 47777777655432
Q ss_pred cccccccCCCCCCCeeEEEecccccc------------HHHHHHHHHHcccCCeEEEEecC
Q 047371 136 LSSHEIRGISETEEYDVVIANILLNP------------LPQLADHIVSYAKPGAVVGISGI 184 (222)
Q Consensus 136 ~~~~~~~~~~~~~~~D~v~~~~~~~~------------~~~~l~~~~~~LkpgG~l~~~~~ 184 (222)
..++||+|++|||+.. +.++++.+.+.|||||.+++...
T Consensus 245 ----------~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~ 295 (329)
T TIGR01177 245 ----------SSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVP 295 (329)
T ss_pred ----------ccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEc
Confidence 3578999999998742 46789999999999999888643
No 62
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.49 E-value=4.9e-13 Score=107.15 Aligned_cols=121 Identities=17% Similarity=0.187 Sum_probs=93.7
Q ss_pred CCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcc
Q 047371 58 GGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYL 136 (222)
Q Consensus 58 ~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (222)
+..++||+|||+|.++..+++. +..+++|+|+++.+++.|++++...++. ++.+..+++..+..
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~--ni~~i~~d~~~~~~------------- 80 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLK--NLHVLCGDANELLD------------- 80 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCC--CEEEEccCHHHHHH-------------
Confidence 4568999999999999988864 6679999999999999999998887775 88888887754310
Q ss_pred ccccccCCCCCCCeeEEEecccccc-----------HHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHhh
Q 047371 137 SSHEIRGISETEEYDVVIANILLNP-----------LPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSEF 199 (222)
Q Consensus 137 ~~~~~~~~~~~~~~D~v~~~~~~~~-----------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~ 199 (222)
...+.+.+|.|+++.+-.+ ...+++.+.+.|||||.+++.+........+.+.+...
T Consensus 81 ------~~~~~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~~ 148 (194)
T TIGR00091 81 ------KFFPDGSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSEN 148 (194)
T ss_pred ------hhCCCCceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhC
Confidence 0114568999999875432 14689999999999999999765555566666666554
No 63
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.48 E-value=7.7e-13 Score=111.43 Aligned_cols=156 Identities=17% Similarity=0.141 Sum_probs=113.4
Q ss_pred CcceeEEeCCCcccccCCcchhHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHh
Q 047371 24 VQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAAL 103 (222)
Q Consensus 24 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~ 103 (222)
++...+.++....-.+|.+...+....++..+. .+++|||+.|=+|.+++.++..|+.+++.+|.|..+++.|++|+..
T Consensus 90 E~gl~f~v~l~~gqktGlFlDqR~nR~~v~~~~-~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~l 168 (286)
T PF10672_consen 90 ENGLKFRVDLTDGQKTGLFLDQRENRKWVRKYA-KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAAL 168 (286)
T ss_dssp ETTEEEEEESSSSSSTSS-GGGHHHHHHHHHHC-TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHH
T ss_pred ECCEEEEEEcCCCCcceEcHHHHhhHHHHHHHc-CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 345677777777777888889998888887764 4899999999999999999888888999999999999999999999
Q ss_pred cCCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc---------HHHHHHHHHHccc
Q 047371 104 NNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP---------LPQLADHIVSYAK 174 (222)
Q Consensus 104 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~---------~~~~l~~~~~~Lk 174 (222)
|++..+++++...|+-.+.. .+...++||+|+++||-.. +.+++..+.++|+
T Consensus 169 Ng~~~~~~~~~~~Dvf~~l~-------------------~~~~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~ 229 (286)
T PF10672_consen 169 NGLDLDRHRFIQGDVFKFLK-------------------RLKKGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLK 229 (286)
T ss_dssp TT-CCTCEEEEES-HHHHHH-------------------HHHHTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEE
T ss_pred cCCCccceEEEecCHHHHHH-------------------HHhcCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 99876788888877643211 0113468999999998532 6678999999999
Q ss_pred CCeEEEEe-cCCCCcHHHHHHHHHhh
Q 047371 175 PGAVVGIS-GILSEQLPRIINRYSEF 199 (222)
Q Consensus 175 pgG~l~~~-~~~~~~~~~~~~~~~~~ 199 (222)
|||.++++ |...-....+.+.+...
T Consensus 230 ~gG~l~~~scs~~i~~~~l~~~~~~~ 255 (286)
T PF10672_consen 230 PGGLLLTCSCSHHISPDFLLEAVAEA 255 (286)
T ss_dssp EEEEEEEEE--TTS-HHHHHHHHHHH
T ss_pred CCCEEEEEcCCcccCHHHHHHHHHHh
Confidence 99998764 44444445555555443
No 64
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.48 E-value=5.6e-13 Score=114.72 Aligned_cols=102 Identities=18% Similarity=0.203 Sum_probs=80.1
Q ss_pred CCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccc
Q 047371 58 GGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLS 137 (222)
Q Consensus 58 ~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (222)
++.+|||+|||+|.++..++..+...|+|+|.|+.++.+++......+.. .++.+...+.+.+.
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~-~~i~~~~~d~e~lp--------------- 185 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGND-QRAHLLPLGIEQLP--------------- 185 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCC-CCeEEEeCCHHHCC---------------
Confidence 57899999999999999998887778999999999987765543322222 36778777665542
Q ss_pred cccccCCCCCCCeeEEEecccccc---HHHHHHHHHHcccCCeEEEEec
Q 047371 138 SHEIRGISETEEYDVVIANILLNP---LPQLADHIVSYAKPGAVVGISG 183 (222)
Q Consensus 138 ~~~~~~~~~~~~~D~v~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~ 183 (222)
..++||+|++...++| ...+++++++.|+|||.+++.+
T Consensus 186 --------~~~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 186 --------ALKAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred --------CcCCcCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEE
Confidence 2567999999887766 4568999999999999999853
No 65
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.48 E-value=5.5e-13 Score=111.18 Aligned_cols=105 Identities=21% Similarity=0.290 Sum_probs=82.1
Q ss_pred HHHHHhh-hcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccc
Q 047371 49 LLLLQSL-IKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMN 126 (222)
Q Consensus 49 ~~~l~~~-~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 126 (222)
..++... .+++.+|||+|||+|.++..+++. +..+++|+|+++.+++.|+++. .++.+...|...+.
T Consensus 21 ~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~-------~~~~~~~~d~~~~~---- 89 (258)
T PRK01683 21 RDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL-------PDCQFVEADIASWQ---- 89 (258)
T ss_pred HHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC-------CCCeEEECchhccC----
Confidence 3444433 356889999999999999988865 5679999999999999998763 14566666654331
Q ss_pred cccccchhccccccccCCCCCCCeeEEEecccccc---HHHHHHHHHHcccCCeEEEEec
Q 047371 127 ERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP---LPQLADHIVSYAKPGAVVGISG 183 (222)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~ 183 (222)
+.++||+|+++..+++ ...+++++.+.|||||.+++..
T Consensus 90 -------------------~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 90 -------------------PPQALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred -------------------CCCCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEEC
Confidence 4568999999998876 3568999999999999999863
No 66
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.48 E-value=9.5e-13 Score=117.72 Aligned_cols=144 Identities=16% Similarity=0.184 Sum_probs=102.4
Q ss_pred ccccCCcchhHHHHHHHHhh--hcCCCcEEEEccCCCHHHHHHHHh--CCCEEEEEeCChHHHHHHHHHHHhcCCCCCce
Q 047371 36 AFGTGEHATTKLCLLLLQSL--IKGGELFLDYGTGSGILGIAAIKF--GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKI 111 (222)
Q Consensus 36 ~f~~~~~~~~~~~~~~l~~~--~~~~~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v 111 (222)
.|..|..........++... .++|.+|||+|||+|..+..+++. +.++|+++|+++.+++.+++++...++. ++
T Consensus 228 ~f~~g~~~~qd~~s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~--~v 305 (434)
T PRK14901 228 GYEEGWWTVQDRSAQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLK--SI 305 (434)
T ss_pred HHhCCeEEEECHHHHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC--eE
Confidence 34455554444444444433 457899999999999999988875 3468999999999999999999999885 68
Q ss_pred eEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc-------------------------HHHHH
Q 047371 112 KLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP-------------------------LPQLA 166 (222)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~-------------------------~~~~l 166 (222)
.+...|...+.. ..+. ..++||.|++++|+.. ..+++
T Consensus 306 ~~~~~D~~~~~~-----~~~~-------------~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL 367 (434)
T PRK14901 306 KILAADSRNLLE-----LKPQ-------------WRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELL 367 (434)
T ss_pred EEEeCChhhccc-----cccc-------------ccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHH
Confidence 888877654310 0000 2467999999987632 24579
Q ss_pred HHHHHcccCCeEEEEecC---CCCcHHHHHHHHHhh
Q 047371 167 DHIVSYAKPGAVVGISGI---LSEQLPRIINRYSEF 199 (222)
Q Consensus 167 ~~~~~~LkpgG~l~~~~~---~~~~~~~~~~~~~~~ 199 (222)
.++.+.|||||++++++. ..++...+...++++
T Consensus 368 ~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~~ 403 (434)
T PRK14901 368 ESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLARH 403 (434)
T ss_pred HHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHhC
Confidence 999999999999887643 234455555565554
No 67
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.47 E-value=4.9e-13 Score=117.60 Aligned_cols=129 Identities=21% Similarity=0.301 Sum_probs=94.5
Q ss_pred ceeEEeCCCcccccCCcchh-------HHHHH-HHHhh-hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHH
Q 047371 26 ATNIILNPGLAFGTGEHATT-------KLCLL-LLQSL-IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKS 96 (222)
Q Consensus 26 ~~~~~~~~~~~f~~~~~~~~-------~~~~~-~l~~~-~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~ 96 (222)
.+.+.++|++.|++|.+... ..... +++.. ++++.+|||+|||+|.++..+++....+|+|+|+|+.+++.
T Consensus 126 ~y~l~ld~~m~ys~g~~~~~~~L~~Aq~~k~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~ 205 (383)
T PRK11705 126 LFEAMLDPRMQYSCGYWKDADTLEEAQEAKLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKL 205 (383)
T ss_pred HHHHhcCCCCcccccccCCCCCHHHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 45677888888877776421 11122 22222 46889999999999999999887645699999999999999
Q ss_pred HHHHHHhcCCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEeccccccH-----HHHHHHHHH
Q 047371 97 AHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPL-----PQLADHIVS 171 (222)
Q Consensus 97 a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~-----~~~l~~~~~ 171 (222)
|+++.. ++ .+++...+... ..++||.|++...+++. ..+++.+.+
T Consensus 206 A~~~~~--~l---~v~~~~~D~~~-------------------------l~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r 255 (383)
T PRK11705 206 AQERCA--GL---PVEIRLQDYRD-------------------------LNGQFDRIVSVGMFEHVGPKNYRTYFEVVRR 255 (383)
T ss_pred HHHHhc--cC---eEEEEECchhh-------------------------cCCCCCEEEEeCchhhCChHHHHHHHHHHHH
Confidence 998863 22 35555554322 14579999998877653 568999999
Q ss_pred cccCCeEEEEecC
Q 047371 172 YAKPGAVVGISGI 184 (222)
Q Consensus 172 ~LkpgG~l~~~~~ 184 (222)
+|||||.+++..+
T Consensus 256 ~LkpGG~lvl~~i 268 (383)
T PRK11705 256 CLKPDGLFLLHTI 268 (383)
T ss_pred HcCCCcEEEEEEc
Confidence 9999999998644
No 68
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.47 E-value=1.6e-12 Score=104.46 Aligned_cols=122 Identities=20% Similarity=0.151 Sum_probs=89.0
Q ss_pred cchhHHHHHHHHhhh---cCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCC
Q 047371 42 HATTKLCLLLLQSLI---KGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPD 118 (222)
Q Consensus 42 ~~~~~~~~~~l~~~~---~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~ 118 (222)
.+++..+.+.+...+ .++.+|||+|||+|.+++.++..+..+|+++|.++.+++.+++|+..+++. ++.+...|.
T Consensus 34 Rp~~d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~--~v~~~~~D~ 111 (199)
T PRK10909 34 RPTTDRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAG--NARVVNTNA 111 (199)
T ss_pred CcCCHHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCC--cEEEEEchH
Confidence 566666654443332 357899999999999999766555689999999999999999999988875 688877765
Q ss_pred cccccccccccccchhccccccccCCCCCCCeeEEEecccccc--HHHHHHHHHHc--ccCCeEEEEecCCC
Q 047371 119 RTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP--LPQLADHIVSY--AKPGAVVGISGILS 186 (222)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~--~~~~l~~~~~~--LkpgG~l~~~~~~~ 186 (222)
..... . ..++||+|++|||+.. ....++.+... |+|++.+++.+...
T Consensus 112 ~~~l~-------------------~--~~~~fDlV~~DPPy~~g~~~~~l~~l~~~~~l~~~~iv~ve~~~~ 162 (199)
T PRK10909 112 LSFLA-------------------Q--PGTPHNVVFVDPPFRKGLLEETINLLEDNGWLADEALIYVESEVE 162 (199)
T ss_pred HHHHh-------------------h--cCCCceEEEECCCCCCChHHHHHHHHHHCCCcCCCcEEEEEecCC
Confidence 43210 0 2346999999999643 34455655553 79999999975443
No 69
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.47 E-value=3.2e-12 Score=102.46 Aligned_cols=133 Identities=17% Similarity=0.208 Sum_probs=94.5
Q ss_pred cchhHHHHHHHHhh--hcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCC
Q 047371 42 HATTKLCLLLLQSL--IKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPD 118 (222)
Q Consensus 42 ~~~~~~~~~~l~~~--~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~ 118 (222)
..+...+..++... .+++.+|||+|||+|.++..+++. +..+++++|+++.+++.+++++...++. ++++...+.
T Consensus 22 p~t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~--~v~~~~~d~ 99 (196)
T PRK07402 22 PLTKREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVK--NVEVIEGSA 99 (196)
T ss_pred CCCHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC--CeEEEECch
Confidence 34555566554444 347889999999999999988864 4579999999999999999999887764 677777765
Q ss_pred cccccccccccccchhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHh
Q 047371 119 RTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSE 198 (222)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~ 198 (222)
.... .. ....+|.++.... .....+++.+.+.|+|||.+++.....++...+.+.+++
T Consensus 100 ~~~~-------~~--------------~~~~~d~v~~~~~-~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~ 157 (196)
T PRK07402 100 PECL-------AQ--------------LAPAPDRVCIEGG-RPIKEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQ 157 (196)
T ss_pred HHHH-------hh--------------CCCCCCEEEEECC-cCHHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHh
Confidence 3210 00 1123466665432 345788999999999999999976554454555555543
No 70
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.47 E-value=2e-12 Score=105.08 Aligned_cols=100 Identities=18% Similarity=0.268 Sum_probs=81.0
Q ss_pred hcCCCcEEEEccCCCHHHHHHHHh-C-CCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371 56 IKGGELFLDYGTGSGILGIAAIKF-G-AAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV 133 (222)
Q Consensus 56 ~~~~~~vLD~G~G~G~~~~~la~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 133 (222)
++++.+|||+|||+|..+..+++. + ..+|+++|+++.+++.|++++...++. ++.+...|.....
T Consensus 74 ~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~--~v~~~~gd~~~~~----------- 140 (212)
T PRK13942 74 LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYD--NVEVIVGDGTLGY----------- 140 (212)
T ss_pred CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC--CeEEEECCcccCC-----------
Confidence 568999999999999999988875 2 369999999999999999999888764 7888888764321
Q ss_pred hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEe
Q 047371 134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGIS 182 (222)
Q Consensus 134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 182 (222)
.+.++||+|+++..... +.+.+.+.|||||.+++.
T Consensus 141 -----------~~~~~fD~I~~~~~~~~---~~~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 141 -----------EENAPYDRIYVTAAGPD---IPKPLIEQLKDGGIMVIP 175 (212)
T ss_pred -----------CcCCCcCEEEECCCccc---chHHHHHhhCCCcEEEEE
Confidence 14578999999775543 445778899999998884
No 71
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.47 E-value=1.4e-12 Score=114.56 Aligned_cols=144 Identities=15% Similarity=0.197 Sum_probs=108.2
Q ss_pred ceeEEeCCCcccccCCcchhHHHHHHHHhhh--cCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHh
Q 047371 26 ATNIILNPGLAFGTGEHATTKLCLLLLQSLI--KGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAAL 103 (222)
Q Consensus 26 ~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~--~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~ 103 (222)
...+.++|+..|.+.. .....+...+...+ .++.+|||+|||+|.+++.++..+ .+++|+|+++.+++.|++|+..
T Consensus 200 g~~~~~~~~~F~Q~n~-~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~ 277 (374)
T TIGR02085 200 DVPLVIRPQSFFQTNP-KVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQM 277 (374)
T ss_pred CEEEEECCCccccCCH-HHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHH
Confidence 3467888877664433 33333444443432 356899999999999999998765 7899999999999999999998
Q ss_pred cCCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEeccccccHH-HHHHHHHHcccCCeEEEEe
Q 047371 104 NNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLP-QLADHIVSYAKPGAVVGIS 182 (222)
Q Consensus 104 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~-~~l~~~~~~LkpgG~l~~~ 182 (222)
+++. ++.+...|...+.. . ..++||+|++|||..... .+++.+. .++|++.+|++
T Consensus 278 ~~~~--~~~~~~~d~~~~~~-------------------~--~~~~~D~vi~DPPr~G~~~~~l~~l~-~~~p~~ivyvs 333 (374)
T TIGR02085 278 LGLD--NLSFAALDSAKFAT-------------------A--QMSAPELVLVNPPRRGIGKELCDYLS-QMAPKFILYSS 333 (374)
T ss_pred cCCC--cEEEEECCHHHHHH-------------------h--cCCCCCEEEECCCCCCCcHHHHHHHH-hcCCCeEEEEE
Confidence 8875 78888887754311 0 123599999999987643 4556554 47999999999
Q ss_pred cCCCCcHHHHHHH
Q 047371 183 GILSEQLPRIINR 195 (222)
Q Consensus 183 ~~~~~~~~~~~~~ 195 (222)
|.+....+++...
T Consensus 334 c~p~TlaRDl~~L 346 (374)
T TIGR02085 334 CNAQTMAKDIAEL 346 (374)
T ss_pred eCHHHHHHHHHHh
Confidence 9888888888776
No 72
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.46 E-value=1.1e-12 Score=118.54 Aligned_cols=104 Identities=23% Similarity=0.247 Sum_probs=83.8
Q ss_pred hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371 56 IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY 135 (222)
Q Consensus 56 ~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 135 (222)
++++.+|||+|||+|.++..+++....+++|+|+|+.+++.|+++... .. .++.+...|......
T Consensus 264 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~--~~-~~v~~~~~d~~~~~~------------ 328 (475)
T PLN02336 264 LKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIG--RK-CSVEFEVADCTKKTY------------ 328 (475)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhc--CC-CceEEEEcCcccCCC------------
Confidence 456889999999999999988876456899999999999999987642 22 367787777654322
Q ss_pred cccccccCCCCCCCeeEEEecccccc---HHHHHHHHHHcccCCeEEEEecC
Q 047371 136 LSSHEIRGISETEEYDVVIANILLNP---LPQLADHIVSYAKPGAVVGISGI 184 (222)
Q Consensus 136 ~~~~~~~~~~~~~~~D~v~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~ 184 (222)
+.++||+|++...+++ ...+++++++.|||||.+++.+.
T Consensus 329 ----------~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 370 (475)
T PLN02336 329 ----------PDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDY 370 (475)
T ss_pred ----------CCCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEe
Confidence 5678999999877766 45689999999999999998754
No 73
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.46 E-value=1.5e-12 Score=116.38 Aligned_cols=155 Identities=18% Similarity=0.147 Sum_probs=109.9
Q ss_pred ceeEEeCCCcccccCCcchhHHHHHHHHhh--hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHh
Q 047371 26 ATNIILNPGLAFGTGEHATTKLCLLLLQSL--IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAAL 103 (222)
Q Consensus 26 ~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~--~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~ 103 (222)
...+.++|...|.. +......+.+.+... .+++.+|||+|||+|.+++.+++.. .+|+|+|+++.+++.|++|+..
T Consensus 259 ~~~~~~~~~~F~Q~-N~~~~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~-~~V~~vE~~~~av~~a~~n~~~ 336 (431)
T TIGR00479 259 DLSFSLSARDFFQV-NSGQNEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQA-KSVVGIEVVPESVEKAQQNAEL 336 (431)
T ss_pred CEEEEECCCceeec-CHHHHHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhC-CEEEEEEcCHHHHHHHHHHHHH
Confidence 34677777755543 333344344444443 3467899999999999999998774 6899999999999999999998
Q ss_pred cCCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc-HHHHHHHHHHcccCCeEEEEe
Q 047371 104 NNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP-LPQLADHIVSYAKPGAVVGIS 182 (222)
Q Consensus 104 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~-~~~~l~~~~~~LkpgG~l~~~ 182 (222)
+++. ++++...|...... .+ ....++||+|++++|... ...+++.+. .++|++.+|++
T Consensus 337 ~~~~--nv~~~~~d~~~~l~-------~~-----------~~~~~~~D~vi~dPPr~G~~~~~l~~l~-~l~~~~ivyvs 395 (431)
T TIGR00479 337 NGIA--NVEFLAGTLETVLP-------KQ-----------PWAGQIPDVLLLDPPRKGCAAEVLRTII-ELKPERIVYVS 395 (431)
T ss_pred hCCC--ceEEEeCCHHHHHH-------HH-----------HhcCCCCCEEEECcCCCCCCHHHHHHHH-hcCCCEEEEEc
Confidence 8875 88888887644210 00 002456999999999765 456677655 48999999999
Q ss_pred cCCCCcHHHHHHHHHhhhhcc
Q 047371 183 GILSEQLPRIINRYSEFLEDI 203 (222)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~ 203 (222)
|.+....+++......++...
T Consensus 396 c~p~tlard~~~l~~~gy~~~ 416 (431)
T TIGR00479 396 CNPATLARDLEFLCKEGYGIT 416 (431)
T ss_pred CCHHHHHHHHHHHHHCCeeEE
Confidence 877766677766555544333
No 74
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.46 E-value=1.8e-12 Score=108.73 Aligned_cols=119 Identities=18% Similarity=0.191 Sum_probs=90.1
Q ss_pred hcCCCcEEEEccCCCHHHHHHHHh--CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371 56 IKGGELFLDYGTGSGILGIAAIKF--GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV 133 (222)
Q Consensus 56 ~~~~~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 133 (222)
.++|.+|||+|||+|..+..+++. +.+.|+++|+++.+++.+++++..+++. ++.+...|...+..
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~--~v~~~~~D~~~~~~---------- 136 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVL--NVAVTNFDGRVFGA---------- 136 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC--cEEEecCCHHHhhh----------
Confidence 467899999999999999988874 2468999999999999999999988875 67777776543311
Q ss_pred hccccccccCCCCCCCeeEEEecccccc-------------------------HHHHHHHHHHcccCCeEEEEecC-C-C
Q 047371 134 EYLSSHEIRGISETEEYDVVIANILLNP-------------------------LPQLADHIVSYAKPGAVVGISGI-L-S 186 (222)
Q Consensus 134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~-------------------------~~~~l~~~~~~LkpgG~l~~~~~-~-~ 186 (222)
..+.||+|++++|+.. ..++++.+.++|||||++++++. . .
T Consensus 137 ------------~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~ 204 (264)
T TIGR00446 137 ------------AVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEP 204 (264)
T ss_pred ------------hccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence 2346999999988653 23488999999999999988633 2 3
Q ss_pred CcHHHHHHHHHh
Q 047371 187 EQLPRIINRYSE 198 (222)
Q Consensus 187 ~~~~~~~~~~~~ 198 (222)
.+.+++.+.+.+
T Consensus 205 ~Ene~vv~~~l~ 216 (264)
T TIGR00446 205 EENEAVVDYLLE 216 (264)
T ss_pred HHHHHHHHHHHH
Confidence 333445554433
No 75
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.46 E-value=5.7e-13 Score=95.49 Aligned_cols=91 Identities=25% Similarity=0.484 Sum_probs=71.1
Q ss_pred EEEEccCCCHHHHHHHHh---C-CCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccc
Q 047371 62 FLDYGTGSGILGIAAIKF---G-AAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLS 137 (222)
Q Consensus 62 vLD~G~G~G~~~~~la~~---~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (222)
|||+|||+|..+..+++. + ..+++|+|+++.+++.++++....+. ++++...|...+..
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~---~~~~~~~D~~~l~~-------------- 63 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP---KVRFVQADARDLPF-------------- 63 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT---TSEEEESCTTCHHH--------------
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC---ceEEEECCHhHCcc--------------
Confidence 799999999999998875 2 37999999999999999999877554 67888888866532
Q ss_pred cccccCCCCCCCeeEEEec-ccccc-----HHHHHHHHHHcccCCe
Q 047371 138 SHEIRGISETEEYDVVIAN-ILLNP-----LPQLADHIVSYAKPGA 177 (222)
Q Consensus 138 ~~~~~~~~~~~~~D~v~~~-~~~~~-----~~~~l~~~~~~LkpgG 177 (222)
..++||+|++. ..+++ ...+++++.++|+|||
T Consensus 64 --------~~~~~D~v~~~~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 64 --------SDGKFDLVVCSGLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp --------HSSSEEEEEE-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred --------cCCCeeEEEEcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 46799999994 43655 3568999999999998
No 76
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.46 E-value=7.4e-13 Score=113.26 Aligned_cols=103 Identities=18% Similarity=0.144 Sum_probs=77.7
Q ss_pred cCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcc
Q 047371 57 KGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYL 136 (222)
Q Consensus 57 ~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (222)
.++++|||+|||+|.++..++..+...|+|+|.|+.++.+++......... .++.+...+...+.
T Consensus 120 ~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~-~~v~~~~~~ie~lp-------------- 184 (314)
T TIGR00452 120 LKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDND-KRAILEPLGIEQLH-------------- 184 (314)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccC-CCeEEEECCHHHCC--------------
Confidence 457899999999999998888777678999999999998765432221211 25556655554432
Q ss_pred ccccccCCCCCCCeeEEEecccccc---HHHHHHHHHHcccCCeEEEEec
Q 047371 137 SSHEIRGISETEEYDVVIANILLNP---LPQLADHIVSYAKPGAVVGISG 183 (222)
Q Consensus 137 ~~~~~~~~~~~~~~D~v~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~ 183 (222)
...+||+|+++.+++| ....++++++.|||||.+++.+
T Consensus 185 ---------~~~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvlet 225 (314)
T TIGR00452 185 ---------ELYAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLET 225 (314)
T ss_pred ---------CCCCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEE
Confidence 2457999999988776 4468999999999999999854
No 77
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.45 E-value=6.4e-13 Score=111.37 Aligned_cols=132 Identities=17% Similarity=0.236 Sum_probs=90.7
Q ss_pred ceEeccceeeeecCCCCCCCcceeEEeCCCcccccCCcchhHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHhCCCEE
Q 047371 5 PVEVTKGLWIVPEWSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMF 84 (222)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~~~~~v 84 (222)
||.++. +.+.++|.++..-+ ++.|. +..+ .|++|||+|||+|+++..++..+++.|
T Consensus 86 Pf~l~g-i~IDtEWrSd~KW~----rl~p~-----------------l~~L--~gk~VLDIGC~nGY~~frM~~~GA~~V 141 (315)
T PF08003_consen 86 PFSLFG-IHIDTEWRSDWKWD----RLLPH-----------------LPDL--KGKRVLDIGCNNGYYSFRMLGRGAKSV 141 (315)
T ss_pred CcccCC-EeecccccccchHH----HHHhh-----------------hCCc--CCCEEEEecCCCcHHHHHHhhcCCCEE
Confidence 566655 77888887643222 33333 2222 699999999999999999999998999
Q ss_pred EEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEeccccccHH-
Q 047371 85 VGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLP- 163 (222)
Q Consensus 85 ~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~- 163 (222)
+|+|.++..+-+.+..-...+.. ..+.......+.++ ..+.||+|+|-.+++|..
T Consensus 142 iGiDP~~lf~~QF~~i~~~lg~~-~~~~~lplgvE~Lp-----------------------~~~~FDtVF~MGVLYHrr~ 197 (315)
T PF08003_consen 142 IGIDPSPLFYLQFEAIKHFLGQD-PPVFELPLGVEDLP-----------------------NLGAFDTVFSMGVLYHRRS 197 (315)
T ss_pred EEECCChHHHHHHHHHHHHhCCC-ccEEEcCcchhhcc-----------------------ccCCcCEEEEeeehhccCC
Confidence 99999998877755433333322 12222212232221 357899999998888854
Q ss_pred --HHHHHHHHcccCCeEEEEecC
Q 047371 164 --QLADHIVSYAKPGAVVGISGI 184 (222)
Q Consensus 164 --~~l~~~~~~LkpgG~l~~~~~ 184 (222)
..+.+++..|+|||.+++.+.
T Consensus 198 Pl~~L~~Lk~~L~~gGeLvLETl 220 (315)
T PF08003_consen 198 PLDHLKQLKDSLRPGGELVLETL 220 (315)
T ss_pred HHHHHHHHHHhhCCCCEEEEEEe
Confidence 578999999999999998433
No 78
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.45 E-value=1.9e-12 Score=115.48 Aligned_cols=140 Identities=14% Similarity=0.162 Sum_probs=100.2
Q ss_pred ccccCCcchhHHHHHHHHhh--hcCCCcEEEEccCCCHHHHHHHHh--CCCEEEEEeCChHHHHHHHHHHHhcCCCCCce
Q 047371 36 AFGTGEHATTKLCLLLLQSL--IKGGELFLDYGTGSGILGIAAIKF--GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKI 111 (222)
Q Consensus 36 ~f~~~~~~~~~~~~~~l~~~--~~~~~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v 111 (222)
.|..|.....+....++... .++|.+|||+|||+|..+..++.. +..+|+++|+++.+++.+++++...++. ++
T Consensus 213 ~~~~G~~~~Qd~~s~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~--~v 290 (431)
T PRK14903 213 VIKDGLATVQGESSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLS--SI 290 (431)
T ss_pred HHHCCeEEEECHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCC--eE
Confidence 35555554444444444333 457889999999999999988875 3579999999999999999999988875 67
Q ss_pred eEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc-------------------------HHHHH
Q 047371 112 KLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP-------------------------LPQLA 166 (222)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~-------------------------~~~~l 166 (222)
.+...|...+.. . ..++||.|++++|+.. ..+++
T Consensus 291 ~~~~~Da~~l~~--------~-------------~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL 349 (431)
T PRK14903 291 EIKIADAERLTE--------Y-------------VQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIV 349 (431)
T ss_pred EEEECchhhhhh--------h-------------hhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHH
Confidence 788777654310 0 2457999999988732 24468
Q ss_pred HHHHHcccCCeEEEEecC--C-CCcHHHHHHHHHh
Q 047371 167 DHIVSYAKPGAVVGISGI--L-SEQLPRIINRYSE 198 (222)
Q Consensus 167 ~~~~~~LkpgG~l~~~~~--~-~~~~~~~~~~~~~ 198 (222)
.++.+.|||||.+++++. . .++...+...+..
T Consensus 350 ~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~fl~~ 384 (431)
T PRK14903 350 SQAWKLLEKGGILLYSTCTVTKEENTEVVKRFVYE 384 (431)
T ss_pred HHHHHhcCCCCEEEEEECCCChhhCHHHHHHHHHh
Confidence 999999999999988633 2 3333444444443
No 79
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.44 E-value=2.1e-12 Score=100.33 Aligned_cols=120 Identities=21% Similarity=0.328 Sum_probs=94.8
Q ss_pred CcEEEEccCCCHHHHHHHHhCCCE-EEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcccc
Q 047371 60 ELFLDYGTGSGILGIAAIKFGAAM-FVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSS 138 (222)
Q Consensus 60 ~~vLD~G~G~G~~~~~la~~~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (222)
.+|||+|||+|.+...|++.+... ++|+|+|+.+++.|+..+.+.+++ ..|+|...|.....+
T Consensus 69 ~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~-n~I~f~q~DI~~~~~--------------- 132 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFS-NEIRFQQLDITDPDF--------------- 132 (227)
T ss_pred cceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCC-cceeEEEeeccCCcc---------------
Confidence 499999999999999999876544 999999999999999888888886 359999888765433
Q ss_pred ccccCCCCCCCeeEEEecccccc-----------HHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHhh-hhcc
Q 047371 139 HEIRGISETEEYDVVIANILLNP-----------LPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSEF-LEDI 203 (222)
Q Consensus 139 ~~~~~~~~~~~~D~v~~~~~~~~-----------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~-~~~~ 203 (222)
..++||+|+--..++. +.-++..+.++|+|||+++|. .++...+++++.++.. |...
T Consensus 133 -------~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvIt-SCN~T~dELv~~f~~~~f~~~ 201 (227)
T KOG1271|consen 133 -------LSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVIT-SCNFTKDELVEEFENFNFEYL 201 (227)
T ss_pred -------cccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEE-ecCccHHHHHHHHhcCCeEEE
Confidence 4667788776554432 233688899999999999986 4677888999988876 5443
No 80
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.44 E-value=3.3e-12 Score=104.52 Aligned_cols=110 Identities=22% Similarity=0.342 Sum_probs=85.1
Q ss_pred CCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcc
Q 047371 58 GGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYL 136 (222)
Q Consensus 58 ~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (222)
++.+|||+|||+|.++..+++. +..+++++|+++.+++.++.+.. .++.+...+......
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~------~~~~~~~~d~~~~~~------------- 94 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS------ENVQFICGDAEKLPL------------- 94 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC------CCCeEEecchhhCCC-------------
Confidence 3568999999999999988875 45679999999999999987653 255677666654422
Q ss_pred ccccccCCCCCCCeeEEEecccccc---HHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHH
Q 047371 137 SSHEIRGISETEEYDVVIANILLNP---LPQLADHIVSYAKPGAVVGISGILSEQLPRIINR 195 (222)
Q Consensus 137 ~~~~~~~~~~~~~~D~v~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~ 195 (222)
+.++||+|+++.++++ ...++.++.+.|||||.+++..+......++...
T Consensus 95 ---------~~~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~~~~~~~~~~~~ 147 (240)
T TIGR02072 95 ---------EDSSFDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTFGPGTLHELRQS 147 (240)
T ss_pred ---------CCCceeEEEEhhhhhhccCHHHHHHHHHHHcCCCcEEEEEeCCccCHHHHHHH
Confidence 4678999999988765 4568999999999999999987665555444433
No 81
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.44 E-value=1.9e-12 Score=103.00 Aligned_cols=99 Identities=23% Similarity=0.340 Sum_probs=77.6
Q ss_pred CCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccc
Q 047371 58 GGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLS 137 (222)
Q Consensus 58 ~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (222)
++.++||+|||.|..++.||+.|. .|+++|.|+.+++.+++.+...++ .++....|...+.
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~l~~~a~~~~l---~i~~~~~Dl~~~~--------------- 90 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEKLQRLAEEEGL---DIRTRVADLNDFD--------------- 90 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHHHTT----TEEEEE-BGCCBS---------------
T ss_pred CCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHhhcCc---eeEEEEecchhcc---------------
Confidence 467899999999999999999985 799999999999999888877776 3777777765543
Q ss_pred cccccCCCCCCCeeEEEecccccc-----HHHHHHHHHHcccCCeEEEEec
Q 047371 138 SHEIRGISETEEYDVVIANILLNP-----LPQLADHIVSYAKPGAVVGISG 183 (222)
Q Consensus 138 ~~~~~~~~~~~~~D~v~~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~ 183 (222)
..+.||+|++..++++ ...+++.+...++|||++++.+
T Consensus 91 --------~~~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~ 133 (192)
T PF03848_consen 91 --------FPEEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVT 133 (192)
T ss_dssp ---------TTTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred --------ccCCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEE
Confidence 3467999998655554 4568999999999999988743
No 82
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.43 E-value=3.4e-12 Score=103.47 Aligned_cols=124 Identities=16% Similarity=0.205 Sum_probs=89.4
Q ss_pred hcCCCcEEEEccCCCHHHHHHHHh--CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371 56 IKGGELFLDYGTGSGILGIAAIKF--GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV 133 (222)
Q Consensus 56 ~~~~~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 133 (222)
++++.+|||+|||+|.++..+++. +..+|+|+|+++ + .++ .++.+..+|...... +......+
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~----------~~~--~~v~~i~~D~~~~~~-~~~i~~~~- 113 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M----------DPI--VGVDFLQGDFRDELV-LKALLERV- 113 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c----------cCC--CCcEEEecCCCChHH-HHHHHHHh-
Confidence 578899999999999999988875 236899999988 1 122 257788887655310 00000011
Q ss_pred hccccccccCCCCCCCeeEEEecccccc--------------HHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHhh
Q 047371 134 EYLSSHEIRGISETEEYDVVIANILLNP--------------LPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSEF 199 (222)
Q Consensus 134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~--------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~ 199 (222)
..++||+|++++..+. ...+++.+.++|||||.+++..+......++...+...
T Consensus 114 ------------~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~~l~~~ 181 (209)
T PRK11188 114 ------------GDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSL 181 (209)
T ss_pred ------------CCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHHHHHHhC
Confidence 4578999999874321 13578999999999999999888888888888888777
Q ss_pred hhcceec
Q 047371 200 LEDILVS 206 (222)
Q Consensus 200 ~~~~~~~ 206 (222)
|..++..
T Consensus 182 f~~v~~~ 188 (209)
T PRK11188 182 FTKVKVR 188 (209)
T ss_pred ceEEEEE
Confidence 7666654
No 83
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.43 E-value=1.4e-12 Score=100.28 Aligned_cols=96 Identities=28% Similarity=0.389 Sum_probs=74.2
Q ss_pred hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371 56 IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY 135 (222)
Q Consensus 56 ~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 135 (222)
.+++.+|||+|||.|.++..+++.+. +++|+|+++.+++. . ++.....+.....
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~---------~---~~~~~~~~~~~~~------------- 73 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK---------R---NVVFDNFDAQDPP------------- 73 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH---------T---TSEEEEEECHTHH-------------
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh---------h---hhhhhhhhhhhhh-------------
Confidence 35788999999999999999988875 99999999999888 1 1222222111111
Q ss_pred cccccccCCCCCCCeeEEEeccccccH---HHHHHHHHHcccCCeEEEEecCCC
Q 047371 136 LSSHEIRGISETEEYDVVIANILLNPL---PQLADHIVSYAKPGAVVGISGILS 186 (222)
Q Consensus 136 ~~~~~~~~~~~~~~~D~v~~~~~~~~~---~~~l~~~~~~LkpgG~l~~~~~~~ 186 (222)
.+.++||+|+++..++++ ..+++.+.++|||||+++++....
T Consensus 74 ---------~~~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 74 ---------FPDGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp ---------CHSSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred ---------ccccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 156789999999998885 558999999999999999976554
No 84
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.42 E-value=6.6e-12 Score=108.36 Aligned_cols=124 Identities=16% Similarity=0.175 Sum_probs=90.7
Q ss_pred cCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371 57 KGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY 135 (222)
Q Consensus 57 ~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 135 (222)
.++.+|||+|||+|.++..+++. +..+++++|.++.+++.|+++... .++++...+......
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~-----~~i~~i~gD~e~lp~------------ 174 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-----KECKIIEGDAEDLPF------------ 174 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc-----cCCeEEeccHHhCCC------------
Confidence 46789999999999998887764 557899999999999999987542 255677666654422
Q ss_pred cccccccCCCCCCCeeEEEecccccc---HHHHHHHHHHcccCCeEEEEecCC----------------CCcHHHHHHHH
Q 047371 136 LSSHEIRGISETEEYDVVIANILLNP---LPQLADHIVSYAKPGAVVGISGIL----------------SEQLPRIINRY 196 (222)
Q Consensus 136 ~~~~~~~~~~~~~~~D~v~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~----------------~~~~~~~~~~~ 196 (222)
+.++||+|+++..+++ ....++++.+.|||||.+++.+.. ..+.+++.+.+
T Consensus 175 ----------~~~sFDvVIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL 244 (340)
T PLN02490 175 ----------PTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWF 244 (340)
T ss_pred ----------CCCceeEEEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHH
Confidence 4678999999887764 456899999999999998875321 12345566666
Q ss_pred Hhh-hhcceecc
Q 047371 197 SEF-LEDILVSE 207 (222)
Q Consensus 197 ~~~-~~~~~~~~ 207 (222)
++. |..++..+
T Consensus 245 ~~aGF~~V~i~~ 256 (340)
T PLN02490 245 TKAGFKDVKLKR 256 (340)
T ss_pred HHCCCeEEEEEE
Confidence 654 65555443
No 85
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.42 E-value=5.6e-12 Score=112.52 Aligned_cols=121 Identities=17% Similarity=0.193 Sum_probs=91.1
Q ss_pred hcCCCcEEEEccCCCHHHHHHHHhC-CCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371 56 IKGGELFLDYGTGSGILGIAAIKFG-AAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE 134 (222)
Q Consensus 56 ~~~~~~vLD~G~G~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 134 (222)
.++|.+|||+|||+|..+..+++.. ..+|+++|+++.+++.+++++...++. +.+...|......
T Consensus 242 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~---~~~~~~D~~~~~~----------- 307 (427)
T PRK10901 242 PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLK---ATVIVGDARDPAQ----------- 307 (427)
T ss_pred CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCC---eEEEEcCcccchh-----------
Confidence 4578999999999999999988763 369999999999999999999888763 4666666643210
Q ss_pred ccccccccCCCCCCCeeEEEecccccc-------------------------HHHHHHHHHHcccCCeEEEEecC---CC
Q 047371 135 YLSSHEIRGISETEEYDVVIANILLNP-------------------------LPQLADHIVSYAKPGAVVGISGI---LS 186 (222)
Q Consensus 135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~-------------------------~~~~l~~~~~~LkpgG~l~~~~~---~~ 186 (222)
+...++||.|++++|+.. ..+++..+.+.|||||.+++++. ..
T Consensus 308 ---------~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~ 378 (427)
T PRK10901 308 ---------WWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPE 378 (427)
T ss_pred ---------hcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChh
Confidence 013467999999988642 13579999999999999998643 34
Q ss_pred CcHHHHHHHHHhh
Q 047371 187 EQLPRIINRYSEF 199 (222)
Q Consensus 187 ~~~~~~~~~~~~~ 199 (222)
++...+...++.+
T Consensus 379 Ene~~v~~~l~~~ 391 (427)
T PRK10901 379 ENEQQIKAFLARH 391 (427)
T ss_pred hCHHHHHHHHHhC
Confidence 5555555566553
No 86
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.42 E-value=2.2e-12 Score=105.23 Aligned_cols=101 Identities=17% Similarity=0.210 Sum_probs=81.9
Q ss_pred CcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcccc
Q 047371 60 ELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSS 138 (222)
Q Consensus 60 ~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (222)
++|||+|||+|..+..+++. +..+++|+|+|+.+++.|++++...++. .++.+...|.....
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~-~~i~~~~~d~~~~~---------------- 63 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQ-GRIRIFYRDSAKDP---------------- 63 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCC-cceEEEecccccCC----------------
Confidence 46999999999999988875 4578999999999999999998887776 47788777653221
Q ss_pred ccccCCCCCCCeeEEEecccccc---HHHHHHHHHHcccCCeEEEEecC
Q 047371 139 HEIRGISETEEYDVVIANILLNP---LPQLADHIVSYAKPGAVVGISGI 184 (222)
Q Consensus 139 ~~~~~~~~~~~~D~v~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~ 184 (222)
..++||+|++...+++ ...+++++.++|||||.+++.++
T Consensus 64 -------~~~~fD~I~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 64 -------FPDTYDLVFGFEVIHHIKDKMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred -------CCCCCCEeehHHHHHhCCCHHHHHHHHHHHcCCCCEEEEEEc
Confidence 2357999999776655 45689999999999999998654
No 87
>PRK04457 spermidine synthase; Provisional
Probab=99.40 E-value=2.3e-11 Score=101.92 Aligned_cols=136 Identities=18% Similarity=0.210 Sum_probs=96.2
Q ss_pred chhHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccc
Q 047371 43 ATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTF 121 (222)
Q Consensus 43 ~~~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~ 121 (222)
+.++.+...+. ..+++.+|||+|||+|.++..+++. +..+++++|+++.+++.|++++...+.. .++++...|+..+
T Consensus 52 ~y~~~m~~~l~-~~~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~-~rv~v~~~Da~~~ 129 (262)
T PRK04457 52 AYTRAMMGFLL-FNPRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENG-ERFEVIEADGAEY 129 (262)
T ss_pred HHHHHHHHHHh-cCCCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCC-CceEEEECCHHHH
Confidence 45555544432 2345789999999999999988764 6678999999999999999987654332 4788888876543
Q ss_pred ccccccccccchhccccccccCCCCCCCeeEEEeccccc-------cHHHHHHHHHHcccCCeEEEEecCCC-CcHHHHH
Q 047371 122 TASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLN-------PLPQLADHIVSYAKPGAVVGISGILS-EQLPRII 193 (222)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~-------~~~~~l~~~~~~LkpgG~l~~~~~~~-~~~~~~~ 193 (222)
.. . ..++||+|+++..-. ...++++.+.+.|+|||.+++..+.. .....+.
T Consensus 130 l~-------------------~--~~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~~~~~~~l 188 (262)
T PRK04457 130 IA-------------------V--HRHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSRDKRYDRYL 188 (262)
T ss_pred HH-------------------h--CCCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCCchhHHHHH
Confidence 11 0 235799999864211 13679999999999999999964432 2345556
Q ss_pred HHHHhhhh
Q 047371 194 NRYSEFLE 201 (222)
Q Consensus 194 ~~~~~~~~ 201 (222)
+.+...|.
T Consensus 189 ~~l~~~F~ 196 (262)
T PRK04457 189 ERLESSFE 196 (262)
T ss_pred HHHHHhcC
Confidence 66666665
No 88
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.40 E-value=8.8e-12 Score=111.28 Aligned_cols=142 Identities=17% Similarity=0.152 Sum_probs=95.6
Q ss_pred cccCCcchhHHHHHHHHhh--hcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeE
Q 047371 37 FGTGEHATTKLCLLLLQSL--IKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKL 113 (222)
Q Consensus 37 f~~~~~~~~~~~~~~l~~~--~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~ 113 (222)
|..|..........++... .++|.+|||+|||+|..+..+++. +.++++|+|+++.+++.+++++...++. ..+.+
T Consensus 215 ~~~G~~~~Qd~~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~-~~v~~ 293 (426)
T TIGR00563 215 FEEGWVTVQDASAQWVATWLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLT-IKAET 293 (426)
T ss_pred hhCCeEEEECHHHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCC-eEEEE
Confidence 3444443333333333333 457899999999999999998875 4579999999999999999999988875 23333
Q ss_pred EecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc-------------------------HHHHHHH
Q 047371 114 HLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP-------------------------LPQLADH 168 (222)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~-------------------------~~~~l~~ 168 (222)
...+..... .+.+.++||.|++++|+.. ...++.+
T Consensus 294 ~~~d~~~~~--------------------~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~ 353 (426)
T TIGR00563 294 KDGDGRGPS--------------------QWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDA 353 (426)
T ss_pred ecccccccc--------------------ccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHH
Confidence 333332110 0113567999999877543 2458999
Q ss_pred HHHcccCCeEEEEecCC---CCcHHHHHHHHHhh
Q 047371 169 IVSYAKPGAVVGISGIL---SEQLPRIINRYSEF 199 (222)
Q Consensus 169 ~~~~LkpgG~l~~~~~~---~~~~~~~~~~~~~~ 199 (222)
+.++|||||.+++++.. .++...+...+..+
T Consensus 354 a~~~LkpgG~lvystcs~~~~Ene~~v~~~l~~~ 387 (426)
T TIGR00563 354 IWPLLKTGGTLVYATCSVLPEENSEQIKAFLQEH 387 (426)
T ss_pred HHHhcCCCcEEEEEeCCCChhhCHHHHHHHHHhC
Confidence 99999999999986432 24445555555543
No 89
>PRK04266 fibrillarin; Provisional
Probab=99.40 E-value=7.7e-11 Score=96.57 Aligned_cols=103 Identities=20% Similarity=0.211 Sum_probs=75.8
Q ss_pred hcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371 56 IKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE 134 (222)
Q Consensus 56 ~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 134 (222)
++++.+|||+|||+|.++..+++. +..+|+|+|+++.+++.+.+++... .++.+...|..... ...+
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~----~nv~~i~~D~~~~~-----~~~~--- 137 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER----KNIIPILADARKPE-----RYAH--- 137 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc----CCcEEEECCCCCcc-----hhhh---
Confidence 568999999999999999999875 4468999999999999887766532 25667766654210 0000
Q ss_pred ccccccccCCCCCCCeeEEEecccccc-HHHHHHHHHHcccCCeEEEE
Q 047371 135 YLSSHEIRGISETEEYDVVIANILLNP-LPQLADHIVSYAKPGAVVGI 181 (222)
Q Consensus 135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~-~~~~l~~~~~~LkpgG~l~~ 181 (222)
-.++||+|+++.+..+ ...+++++.+.|||||.+++
T Consensus 138 -----------l~~~~D~i~~d~~~p~~~~~~L~~~~r~LKpGG~lvI 174 (226)
T PRK04266 138 -----------VVEKVDVIYQDVAQPNQAEIAIDNAEFFLKDGGYLLL 174 (226)
T ss_pred -----------ccccCCEEEECCCChhHHHHHHHHHHHhcCCCcEEEE
Confidence 1345999998754322 23458999999999999999
No 90
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.40 E-value=8e-12 Score=112.11 Aligned_cols=104 Identities=22% Similarity=0.250 Sum_probs=84.4
Q ss_pred hcCCCcEEEEccCCCHHHHHHHHh--CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371 56 IKGGELFLDYGTGSGILGIAAIKF--GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV 133 (222)
Q Consensus 56 ~~~~~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 133 (222)
..+|.+|||+|||+|..+..+++. +..+|+|+|+++.+++.+++++...++. ++.+...|...+.
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~--~v~~~~~Da~~~~----------- 314 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGIT--IIETIEGDARSFS----------- 314 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCC--eEEEEeCcccccc-----------
Confidence 357889999999999999888764 3468999999999999999999988875 6888877765431
Q ss_pred hccccccccCCCCCCCeeEEEecccccc-------------------------HHHHHHHHHHcccCCeEEEEecC
Q 047371 134 EYLSSHEIRGISETEEYDVVIANILLNP-------------------------LPQLADHIVSYAKPGAVVGISGI 184 (222)
Q Consensus 134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~-------------------------~~~~l~~~~~~LkpgG~l~~~~~ 184 (222)
+.++||+|++++|+.. ...++..+.+.|||||++++++.
T Consensus 315 ------------~~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystc 378 (445)
T PRK14904 315 ------------PEEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATC 378 (445)
T ss_pred ------------cCCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 3467999999887532 12479999999999999998644
No 91
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=5.5e-12 Score=112.09 Aligned_cols=152 Identities=22% Similarity=0.246 Sum_probs=118.5
Q ss_pred ceeEEeCCCcccccCCcchhHHHHHHHHhhhc--CCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHh
Q 047371 26 ATNIILNPGLAFGTGEHATTKLCLLLLQSLIK--GGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAAL 103 (222)
Q Consensus 26 ~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~--~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~ 103 (222)
...+.++|. +|-+.+......+.......+. +++++||+.||.|.+++.+++. ..+|+|+|+++++++.|++|++.
T Consensus 260 ~~~~~~~~~-sF~Q~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~-~~~V~gvEi~~~aV~~A~~NA~~ 337 (432)
T COG2265 260 GVSFQISPR-SFFQVNPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR-VKKVHGVEISPEAVEAAQENAAA 337 (432)
T ss_pred ceEEEeCCC-CceecCHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc-CCEEEEEecCHHHHHHHHHHHHH
Confidence 466777777 4445555555555555555543 6789999999999999999966 47999999999999999999999
Q ss_pred cCCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEeccccccHH-HHHHHHHHcccCCeEEEEe
Q 047371 104 NNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLP-QLADHIVSYAKPGAVVGIS 182 (222)
Q Consensus 104 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~-~~l~~~~~~LkpgG~l~~~ 182 (222)
+++. |+.|...+.+.+.. .+.....+|+|+.+||..... .+++.+. .++|..++|+|
T Consensus 338 n~i~--N~~f~~~~ae~~~~-------------------~~~~~~~~d~VvvDPPR~G~~~~~lk~l~-~~~p~~IvYVS 395 (432)
T COG2265 338 NGID--NVEFIAGDAEEFTP-------------------AWWEGYKPDVVVVDPPRAGADREVLKQLA-KLKPKRIVYVS 395 (432)
T ss_pred cCCC--cEEEEeCCHHHHhh-------------------hccccCCCCEEEECCCCCCCCHHHHHHHH-hcCCCcEEEEe
Confidence 9987 79999888876632 111245789999999998877 4555544 57888999999
Q ss_pred cCCCCcHHHHHHHHHhhhh
Q 047371 183 GILSEQLPRIINRYSEFLE 201 (222)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~ 201 (222)
|.+....+++......++.
T Consensus 396 CNP~TlaRDl~~L~~~gy~ 414 (432)
T COG2265 396 CNPATLARDLAILASTGYE 414 (432)
T ss_pred CCHHHHHHHHHHHHhCCeE
Confidence 9999999999888887654
No 92
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.40 E-value=8.5e-12 Score=111.94 Aligned_cols=120 Identities=19% Similarity=0.238 Sum_probs=90.5
Q ss_pred hcCCCcEEEEccCCCHHHHHHHHh--CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371 56 IKGGELFLDYGTGSGILGIAAIKF--GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV 133 (222)
Q Consensus 56 ~~~~~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 133 (222)
.+++.+|||+|||+|..+..+++. +..+++++|+++.+++.+++++..+++. ++.+...|...+.. .
T Consensus 248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~--~v~~~~~D~~~~~~-------~-- 316 (444)
T PRK14902 248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLT--NIETKALDARKVHE-------K-- 316 (444)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEeCCcccccc-------h--
Confidence 357889999999999999998874 4579999999999999999999988875 58888877654310 0
Q ss_pred hccccccccCCCCCCCeeEEEecccccc-------------------------HHHHHHHHHHcccCCeEEEEecCC--C
Q 047371 134 EYLSSHEIRGISETEEYDVVIANILLNP-------------------------LPQLADHIVSYAKPGAVVGISGIL--S 186 (222)
Q Consensus 134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~-------------------------~~~~l~~~~~~LkpgG~l~~~~~~--~ 186 (222)
..++||+|++++|+.. ...++..+.+.|||||.+++++.. .
T Consensus 317 ------------~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~ 384 (444)
T PRK14902 317 ------------FAEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEK 384 (444)
T ss_pred ------------hcccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCCh
Confidence 1267999999988532 134789999999999999976332 2
Q ss_pred -CcHHHHHHHHHh
Q 047371 187 -EQLPRIINRYSE 198 (222)
Q Consensus 187 -~~~~~~~~~~~~ 198 (222)
++...+...++.
T Consensus 385 ~Ene~vv~~~l~~ 397 (444)
T PRK14902 385 EENEEVIEAFLEE 397 (444)
T ss_pred hhhHHHHHHHHHh
Confidence 333444445554
No 93
>PRK06922 hypothetical protein; Provisional
Probab=99.40 E-value=4.8e-12 Score=116.04 Aligned_cols=103 Identities=17% Similarity=0.242 Sum_probs=80.3
Q ss_pred CCCcEEEEccCCCHHHHHHHH-hCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcc
Q 047371 58 GGELFLDYGTGSGILGIAAIK-FGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYL 136 (222)
Q Consensus 58 ~~~~vLD~G~G~G~~~~~la~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (222)
++.+|||+|||+|..+..+++ .+..+++|+|+|+.+++.|+++....+. ++.+...|...+..
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~---~ie~I~gDa~dLp~------------- 481 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGR---SWNVIKGDAINLSS------------- 481 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC---CeEEEEcchHhCcc-------------
Confidence 578999999999999888776 4668999999999999999988654442 45666666543310
Q ss_pred ccccccCCCCCCCeeEEEecccccc----------------HHHHHHHHHHcccCCeEEEEec
Q 047371 137 SSHEIRGISETEEYDVVIANILLNP----------------LPQLADHIVSYAKPGAVVGISG 183 (222)
Q Consensus 137 ~~~~~~~~~~~~~~D~v~~~~~~~~----------------~~~~l~~~~~~LkpgG~l~~~~ 183 (222)
..++++||+|+++.++++ ...+++++.+.|||||.+++.+
T Consensus 482 -------~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D 537 (677)
T PRK06922 482 -------SFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD 537 (677)
T ss_pred -------ccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 015678999999987764 2467999999999999999964
No 94
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.39 E-value=5.8e-12 Score=99.59 Aligned_cols=117 Identities=17% Similarity=0.231 Sum_probs=84.4
Q ss_pred CcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccccc
Q 047371 60 ELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSH 139 (222)
Q Consensus 60 ~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (222)
.++||+|||+|.++..|+.. ..+++++|+++.+++.|++++... .++.+...+...+.
T Consensus 45 ~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al~~Ar~Rl~~~----~~V~~~~~dvp~~~----------------- 102 (201)
T PF05401_consen 45 RRALEVGCSIGVLTERLAPR-CDRLLAVDISPRALARARERLAGL----PHVEWIQADVPEFW----------------- 102 (201)
T ss_dssp EEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHHHHHHHHTTT-----SSEEEEES-TTT-------------------
T ss_pred ceeEecCCCccHHHHHHHHh-hCceEEEeCCHHHHHHHHHhcCCC----CCeEEEECcCCCCC-----------------
Confidence 58999999999999999987 478999999999999999988643 37889888875542
Q ss_pred cccCCCCCCCeeEEEeccccccH------HHHHHHHHHcccCCeEEEEecCC---------CCcHHHHHHHHHhhhhcce
Q 047371 140 EIRGISETEEYDVVIANILLNPL------PQLADHIVSYAKPGAVVGISGIL---------SEQLPRIINRYSEFLEDIL 204 (222)
Q Consensus 140 ~~~~~~~~~~~D~v~~~~~~~~~------~~~l~~~~~~LkpgG~l~~~~~~---------~~~~~~~~~~~~~~~~~~~ 204 (222)
+.++||+|++...++++ ..++..+...|+|||.+++.... .-..+.+.+.+.+.+..++
T Consensus 103 ------P~~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~~~~~~ 176 (201)
T PF05401_consen 103 ------PEGRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEHLTEVE 176 (201)
T ss_dssp -------SS-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHHSEEEE
T ss_pred ------CCCCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHHHhhhee
Confidence 78899999998887764 34689999999999999994332 2244566666666654444
No 95
>PLN03075 nicotianamine synthase; Provisional
Probab=99.39 E-value=1.4e-11 Score=103.98 Aligned_cols=116 Identities=24% Similarity=0.281 Sum_probs=86.0
Q ss_pred hhHHHHHHHHhh-hcCCCcEEEEccCCCHH-HHHHHH--hCCCEEEEEeCChHHHHHHHHHHHh-cCCCCCceeEEecCC
Q 047371 44 TTKLCLLLLQSL-IKGGELFLDYGTGSGIL-GIAAIK--FGAAMFVGVDIDPQVIKSAHQNAAL-NNIGPKKIKLHLVPD 118 (222)
Q Consensus 44 ~~~~~~~~l~~~-~~~~~~vLD~G~G~G~~-~~~la~--~~~~~v~gvD~s~~~l~~a~~~~~~-~~~~~~~v~~~~~~~ 118 (222)
..+.-..++..+ ..++++|+|+|||.|.+ ++.++. .+..+++|+|+++.+++.|++.+.. .++. ++++|...|.
T Consensus 108 L~~lE~~~L~~~~~~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~-~rV~F~~~Da 186 (296)
T PLN03075 108 LSKLEFDLLSQHVNGVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLS-KRMFFHTADV 186 (296)
T ss_pred HHHHHHHHHHHhhcCCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCcc-CCcEEEECch
Confidence 344444455444 23678999999998744 444443 3667899999999999999999964 6775 5799999887
Q ss_pred cccccccccccccchhccccccccCCCCCCCeeEEEeccccc----cHHHHHHHHHHcccCCeEEEEe
Q 047371 119 RTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLN----PLPQLADHIVSYAKPGAVVGIS 182 (222)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~----~~~~~l~~~~~~LkpgG~l~~~ 182 (222)
..... ..++||+|++....+ ...++++++.+.|+|||++++-
T Consensus 187 ~~~~~----------------------~l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr 232 (296)
T PLN03075 187 MDVTE----------------------SLKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLR 232 (296)
T ss_pred hhccc----------------------ccCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEe
Confidence 54311 346799999994322 3567899999999999999995
No 96
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.39 E-value=1.6e-13 Score=97.80 Aligned_cols=95 Identities=26% Similarity=0.377 Sum_probs=59.8
Q ss_pred EEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccccccc
Q 047371 63 LDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEI 141 (222)
Q Consensus 63 LD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (222)
||+|||+|.++..+... +..+++|+|+|+.+++.|++++...... +............
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~--~~~~~~~~~~~~~------------------- 59 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGND--NFERLRFDVLDLF------------------- 59 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT-----EEEEE--SSS---------------------
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCc--ceeEEEeecCChh-------------------
Confidence 79999999999988765 6689999999999999998888766543 2223222221110
Q ss_pred cCCCCCCCeeEEEeccccccH---HHHHHHHHHcccCCeEE
Q 047371 142 RGISETEEYDVVIANILLNPL---PQLADHIVSYAKPGAVV 179 (222)
Q Consensus 142 ~~~~~~~~~D~v~~~~~~~~~---~~~l~~~~~~LkpgG~l 179 (222)
.....++||+|++..+++++ ..++++++++|||||.+
T Consensus 60 -~~~~~~~fD~V~~~~vl~~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 60 -DYDPPESFDLVVASNVLHHLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp --CCC----SEEEEE-TTS--S-HHHHHHHHTTT-TSS-EE
T ss_pred -hcccccccceehhhhhHhhhhhHHHHHHHHHHHcCCCCCC
Confidence 00023589999999888874 56899999999999986
No 97
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.39 E-value=1e-12 Score=104.62 Aligned_cols=108 Identities=24% Similarity=0.355 Sum_probs=86.9
Q ss_pred hHHHHHHHHhh-hcCCCcEEEEccCCCHHHHHHHH-hCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccc
Q 047371 45 TKLCLLLLQSL-IKGGELFLDYGTGSGILGIAAIK-FGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFT 122 (222)
Q Consensus 45 ~~~~~~~l~~~-~~~~~~vLD~G~G~G~~~~~la~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~ 122 (222)
++-..+++... ..+..+|.|+|||+|..+..+++ ++.+.++|+|-|+.|++.|+.+.. +.+|...|.
T Consensus 16 tRPa~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp-------~~~f~~aDl---- 84 (257)
T COG4106 16 TRPARDLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLP-------DATFEEADL---- 84 (257)
T ss_pred cCcHHHHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCC-------CCceecccH----
Confidence 34445566554 34567999999999999998886 578999999999999999977642 455666654
Q ss_pred cccccccccchhccccccccCCCCCCCeeEEEeccccccHH---HHHHHHHHcccCCeEEEEe
Q 047371 123 ASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLP---QLADHIVSYAKPGAVVGIS 182 (222)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~---~~l~~~~~~LkpgG~l~~~ 182 (222)
.+|++..++|++++|..++++. .++..+...|.|||.+.+.
T Consensus 85 -------------------~~w~p~~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQ 128 (257)
T COG4106 85 -------------------RTWKPEQPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQ 128 (257)
T ss_pred -------------------hhcCCCCccchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEE
Confidence 4456889999999999998865 5899999999999999985
No 98
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.39 E-value=5.9e-12 Score=105.98 Aligned_cols=120 Identities=19% Similarity=0.235 Sum_probs=86.3
Q ss_pred hhHHHHHHHHhhhc-CCCcEEEEccCCCHHHHHHHHh-C---CCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCC
Q 047371 44 TTKLCLLLLQSLIK-GGELFLDYGTGSGILGIAAIKF-G---AAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPD 118 (222)
Q Consensus 44 ~~~~~~~~l~~~~~-~~~~vLD~G~G~G~~~~~la~~-~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~ 118 (222)
..+.+...+...++ ++.+|||+|||+|.++..+++. + ..+++|+|+|+.+++.|+++. .++.+...+.
T Consensus 70 l~~~i~~~l~~~l~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-------~~~~~~~~d~ 142 (272)
T PRK11088 70 LRDAVANLLAERLDEKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY-------PQVTFCVASS 142 (272)
T ss_pred HHHHHHHHHHHhcCCCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-------CCCeEEEeec
Confidence 33444455554433 4578999999999999988764 2 247999999999999997653 1456666666
Q ss_pred cccccccccccccchhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHH
Q 047371 119 RTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGILSEQLPRIINRY 196 (222)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~ 196 (222)
..+++ ++++||+|++... ...++++.++|||||++++.........++.+..
T Consensus 143 ~~lp~----------------------~~~sfD~I~~~~~----~~~~~e~~rvLkpgG~li~~~p~~~~l~el~~~~ 194 (272)
T PRK11088 143 HRLPF----------------------ADQSLDAIIRIYA----PCKAEELARVVKPGGIVITVTPGPRHLFELKGLI 194 (272)
T ss_pred ccCCC----------------------cCCceeEEEEecC----CCCHHHHHhhccCCCEEEEEeCCCcchHHHHHHh
Confidence 54432 5778999998653 2346889999999999999877666666665554
No 99
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.38 E-value=8.3e-12 Score=108.99 Aligned_cols=117 Identities=13% Similarity=0.217 Sum_probs=91.1
Q ss_pred CCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcc
Q 047371 58 GGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYL 136 (222)
Q Consensus 58 ~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (222)
.+..+||+|||+|.++..+|+. +..+++|+|+++.++..|.+++..+++. ++.+...|+..+. .
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~--NV~~i~~DA~~ll-------~------ 186 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLK--NLLIINYDARLLL-------E------ 186 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCC--cEEEEECCHHHhh-------h------
Confidence 4568999999999999998875 6679999999999999999999888875 7888888875431 0
Q ss_pred ccccccCCCCCCCeeEEEeccccccH---------HHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHH
Q 047371 137 SSHEIRGISETEEYDVVIANILLNPL---------PQLADHIVSYAKPGAVVGISGILSEQLPRIINRY 196 (222)
Q Consensus 137 ~~~~~~~~~~~~~~D~v~~~~~~~~~---------~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~ 196 (222)
..+++++|.|+++.|..+. ..++..+.++|+|||.+.+.+-...-.....+.+
T Consensus 187 -------~~~~~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~~~e~~ 248 (390)
T PRK14121 187 -------LLPSNSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSELYFEFSLELF 248 (390)
T ss_pred -------hCCCCceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECHHHHHHHHHHH
Confidence 1167889999998876542 5789999999999999999644433333433443
No 100
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=1.4e-11 Score=100.67 Aligned_cols=124 Identities=25% Similarity=0.306 Sum_probs=104.1
Q ss_pred hcCCCcEEEEccCCCHHHHHHHHh--CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371 56 IKGGELFLDYGTGSGILGIAAIKF--GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV 133 (222)
Q Consensus 56 ~~~~~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 133 (222)
+.||++|+|.|+|+|.++..++.. +.++|+..|+.+..++.|++|+...++. +++.+...|.....
T Consensus 92 i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~-d~v~~~~~Dv~~~~----------- 159 (256)
T COG2519 92 ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLG-DRVTLKLGDVREGI----------- 159 (256)
T ss_pred CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccc-cceEEEeccccccc-----------
Confidence 668999999999999999999963 5589999999999999999999998887 35877777765442
Q ss_pred hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHhh-hhccee
Q 047371 134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSEF-LEDILV 205 (222)
Q Consensus 134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~-~~~~~~ 205 (222)
..+.||.|+.+.|- ..+.++++.++|||||.+++.....+|..+..+.+++. |..++.
T Consensus 160 ------------~~~~vDav~LDmp~--PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~~~ie~ 218 (256)
T COG2519 160 ------------DEEDVDAVFLDLPD--PWNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGFVDIEA 218 (256)
T ss_pred ------------cccccCEEEEcCCC--hHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCccchhh
Confidence 23489999988765 47899999999999999999888889999999998887 544443
No 101
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.38 E-value=2.5e-11 Score=99.35 Aligned_cols=105 Identities=18% Similarity=0.254 Sum_probs=83.4
Q ss_pred cCCCcEEEEccCCCHHHHHHHHhC--CCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371 57 KGGELFLDYGTGSGILGIAAIKFG--AAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE 134 (222)
Q Consensus 57 ~~~~~vLD~G~G~G~~~~~la~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 134 (222)
.++.+|||+|||+|.++..++... ..+++++|+++.+++.+++++...+.. .++.+...+......
T Consensus 50 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~~----------- 117 (239)
T PRK00216 50 RPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLS-GNVEFVQGDAEALPF----------- 117 (239)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccc-cCeEEEecccccCCC-----------
Confidence 467899999999999999888764 489999999999999999988665443 367777776654321
Q ss_pred ccccccccCCCCCCCeeEEEecccccc---HHHHHHHHHHcccCCeEEEEecC
Q 047371 135 YLSSHEIRGISETEEYDVVIANILLNP---LPQLADHIVSYAKPGAVVGISGI 184 (222)
Q Consensus 135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~ 184 (222)
..++||+|+++..+++ ...+++.+.++|+|||.+++.+.
T Consensus 118 -----------~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~ 159 (239)
T PRK00216 118 -----------PDNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEF 159 (239)
T ss_pred -----------CCCCccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEe
Confidence 4568999998766554 56789999999999999988644
No 102
>PRK05785 hypothetical protein; Provisional
Probab=99.38 E-value=1.7e-11 Score=100.58 Aligned_cols=95 Identities=14% Similarity=0.155 Sum_probs=72.6
Q ss_pred HHHHhhhcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccccccccccc
Q 047371 50 LLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERV 129 (222)
Q Consensus 50 ~~l~~~~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 129 (222)
..+.....++.+|||+|||+|.++..+++....+++|+|+|+.|++.|++.. .+...+.+.+++
T Consensus 43 ~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~----------~~~~~d~~~lp~------ 106 (226)
T PRK05785 43 KTILKYCGRPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVAD----------DKVVGSFEALPF------ 106 (226)
T ss_pred HHHHHhcCCCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhcc----------ceEEechhhCCC------
Confidence 3333333457899999999999999988763368999999999999997631 133445544432
Q ss_pred ccchhccccccccCCCCCCCeeEEEecccccc---HHHHHHHHHHcccCC
Q 047371 130 DGVVEYLSSHEIRGISETEEYDVVIANILLNP---LPQLADHIVSYAKPG 176 (222)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~---~~~~l~~~~~~Lkpg 176 (222)
++++||+|+++..+++ ....++++.|.|||.
T Consensus 107 ----------------~d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 107 ----------------RDKSFDVVMSSFALHASDNIEKVIAEFTRVSRKQ 140 (226)
T ss_pred ----------------CCCCEEEEEecChhhccCCHHHHHHHHHHHhcCc
Confidence 6789999999888765 456899999999995
No 103
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.37 E-value=2.3e-11 Score=98.66 Aligned_cols=99 Identities=13% Similarity=0.158 Sum_probs=79.4
Q ss_pred hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371 56 IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY 135 (222)
Q Consensus 56 ~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 135 (222)
.+++.+|||+|||+|..+..+++.. .+++++|+++.+++.|++++...++. ++.+...+....
T Consensus 76 ~~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~~~a~~~~~~~~~~--~v~~~~~d~~~~-------------- 138 (212)
T PRK00312 76 LKPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQWEAKRRLKQLGLH--NVSVRHGDGWKG-------------- 138 (212)
T ss_pred CCCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHHHHHHHHHHHCCCC--ceEEEECCcccC--------------
Confidence 4578899999999999998887764 58999999999999999999887775 677777765321
Q ss_pred cccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEe
Q 047371 136 LSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGIS 182 (222)
Q Consensus 136 ~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 182 (222)
+...++||+|+++..... +.+.+.+.|+|||.+++.
T Consensus 139 --------~~~~~~fD~I~~~~~~~~---~~~~l~~~L~~gG~lv~~ 174 (212)
T PRK00312 139 --------WPAYAPFDRILVTAAAPE---IPRALLEQLKEGGILVAP 174 (212)
T ss_pred --------CCcCCCcCEEEEccCchh---hhHHHHHhcCCCcEEEEE
Confidence 113468999999876654 356788999999999985
No 104
>PRK08317 hypothetical protein; Provisional
Probab=99.36 E-value=2.2e-11 Score=99.44 Aligned_cols=103 Identities=18% Similarity=0.233 Sum_probs=81.3
Q ss_pred hcCCCcEEEEccCCCHHHHHHHHh--CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371 56 IKGGELFLDYGTGSGILGIAAIKF--GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV 133 (222)
Q Consensus 56 ~~~~~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 133 (222)
+.++.+|||+|||+|.++..++.. +..+++|+|+++.+++.++++..... .++.+...+......
T Consensus 17 ~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~---~~~~~~~~d~~~~~~---------- 83 (241)
T PRK08317 17 VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLG---PNVEFVRGDADGLPF---------- 83 (241)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCC---CceEEEecccccCCC----------
Confidence 457889999999999999988875 35789999999999999988732221 367777776644322
Q ss_pred hccccccccCCCCCCCeeEEEecccccc---HHHHHHHHHHcccCCeEEEEec
Q 047371 134 EYLSSHEIRGISETEEYDVVIANILLNP---LPQLADHIVSYAKPGAVVGISG 183 (222)
Q Consensus 134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~ 183 (222)
+.++||+|+++..+++ ...+++++.++|||||.+++..
T Consensus 84 ------------~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 84 ------------PDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred ------------CCCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEe
Confidence 4678999999877765 4668999999999999998854
No 105
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=1.1e-11 Score=99.23 Aligned_cols=99 Identities=20% Similarity=0.318 Sum_probs=83.1
Q ss_pred hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371 56 IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY 135 (222)
Q Consensus 56 ~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 135 (222)
++++++|||+|||+|+.+..+++.. .+|+.+|..++..+.|++++...++. |+.+.++|...
T Consensus 70 ~~~g~~VLEIGtGsGY~aAvla~l~-~~V~siEr~~~L~~~A~~~L~~lg~~--nV~v~~gDG~~--------------- 131 (209)
T COG2518 70 LKPGDRVLEIGTGSGYQAAVLARLV-GRVVSIERIEELAEQARRNLETLGYE--NVTVRHGDGSK--------------- 131 (209)
T ss_pred CCCCCeEEEECCCchHHHHHHHHHh-CeEEEEEEcHHHHHHHHHHHHHcCCC--ceEEEECCccc---------------
Confidence 6789999999999999999999985 49999999999999999999999986 79998888632
Q ss_pred cccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEe
Q 047371 136 LSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGIS 182 (222)
Q Consensus 136 ~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 182 (222)
.|.+..+||.|+........ -+.+.+.||+||++++-
T Consensus 132 -------G~~~~aPyD~I~Vtaaa~~v---P~~Ll~QL~~gGrlv~P 168 (209)
T COG2518 132 -------GWPEEAPYDRIIVTAAAPEV---PEALLDQLKPGGRLVIP 168 (209)
T ss_pred -------CCCCCCCcCEEEEeeccCCC---CHHHHHhcccCCEEEEE
Confidence 24467899999987765433 34566789999999983
No 106
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.36 E-value=1.6e-11 Score=101.12 Aligned_cols=109 Identities=11% Similarity=0.144 Sum_probs=87.5
Q ss_pred cCCCcEEEEccCCCHHHHHHHHh--CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371 57 KGGELFLDYGTGSGILGIAAIKF--GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE 134 (222)
Q Consensus 57 ~~~~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 134 (222)
.++++|||+|||+|..++.++.. +.++++++|+++.+++.|++++..+++. +++++..+++..... .+
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~-~~i~~~~gda~~~L~-------~l-- 136 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVD-HKINFIQSDALSALD-------QL-- 136 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEEccHHHHHH-------HH--
Confidence 45889999999999988887764 4579999999999999999999999987 588898887754310 00
Q ss_pred ccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEe
Q 047371 135 YLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGIS 182 (222)
Q Consensus 135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 182 (222)
....+.++||+|+++..-..+..+++.+.+.|+|||.+++.
T Consensus 137 -------~~~~~~~~fD~VfiDa~k~~y~~~~~~~~~ll~~GG~ii~d 177 (234)
T PLN02781 137 -------LNNDPKPEFDFAFVDADKPNYVHFHEQLLKLVKVGGIIAFD 177 (234)
T ss_pred -------HhCCCCCCCCEEEECCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 00002468999999887777888999999999999999974
No 107
>PRK00811 spermidine synthase; Provisional
Probab=99.35 E-value=4.7e-11 Score=101.08 Aligned_cols=142 Identities=14% Similarity=0.183 Sum_probs=101.0
Q ss_pred hcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcC--C-CCCceeEEecCCccccccccccccc
Q 047371 56 IKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNN--I-GPKKIKLHLVPDRTFTASMNERVDG 131 (222)
Q Consensus 56 ~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~--~-~~~~v~~~~~~~~~~~~~~~~~~~~ 131 (222)
.+++++||++|||+|..+..+++. +..+|+++|+++.+++.|++.+...+ . ...++++...|+..+..
T Consensus 74 ~~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~-------- 145 (283)
T PRK00811 74 HPNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVA-------- 145 (283)
T ss_pred CCCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHh--------
Confidence 356789999999999999988876 56799999999999999999876422 1 23578888888755421
Q ss_pred chhccccccccCCCCCCCeeEEEeccc--ccc-----HHHHHHHHHHcccCCeEEEEecC-C---CCcHHHHHHHHHhhh
Q 047371 132 VVEYLSSHEIRGISETEEYDVVIANIL--LNP-----LPQLADHIVSYAKPGAVVGISGI-L---SEQLPRIINRYSEFL 200 (222)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~D~v~~~~~--~~~-----~~~~l~~~~~~LkpgG~l~~~~~-~---~~~~~~~~~~~~~~~ 200 (222)
...++||+|+++.. ... ..++++.+.+.|+|||.+++..- . ......+.+.+.+.|
T Consensus 146 -------------~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~~~~~~~~~~~i~~tl~~~F 212 (283)
T PRK00811 146 -------------ETENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGSPFYQADEIKDMHRKLKEVF 212 (283)
T ss_pred -------------hCCCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCCcccCHHHHHHHHHHHHHHC
Confidence 03568999999742 211 25678999999999999988421 1 233455555666655
Q ss_pred hccee-------cccCCceEeeccc
Q 047371 201 EDILV-------SEKDDWRCVSGTK 218 (222)
Q Consensus 201 ~~~~~-------~~~~~w~~~~~~k 218 (222)
..... ...+.|.-+.+++
T Consensus 213 ~~v~~~~~~vp~~~~~~w~f~~as~ 237 (283)
T PRK00811 213 PIVRPYQAAIPTYPSGLWSFTFASK 237 (283)
T ss_pred CCEEEEEeECCcccCchheeEEeec
Confidence 54443 2357787777766
No 108
>PLN02672 methionine S-methyltransferase
Probab=99.35 E-value=4.8e-11 Score=115.45 Aligned_cols=148 Identities=15% Similarity=0.176 Sum_probs=104.1
Q ss_pred cceeEEeCCCcccccCCcchhHHHHHHHHhhhc---CCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHH
Q 047371 25 QATNIILNPGLAFGTGEHATTKLCLLLLQSLIK---GGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQN 100 (222)
Q Consensus 25 ~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~---~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~ 100 (222)
....+.++|+.-- ..+-+..+.+.+..... ++.+|||+|||+|.+++.++.. +..+++|+|+|+.+++.|+.|
T Consensus 85 ~~l~~~V~p~VLI---PRpeTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~N 161 (1082)
T PLN02672 85 KKLTMMEIPSIFI---PEDWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWIN 161 (1082)
T ss_pred cCCceeeCCCccc---CchhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH
Confidence 3466888888543 23444444444533211 2468999999999999998875 457999999999999999999
Q ss_pred HHhcCCC--------------CCceeEEecCCcccccccccccccchhccccccccCCCC-CCCeeEEEecccccc----
Q 047371 101 AALNNIG--------------PKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISE-TEEYDVVIANILLNP---- 161 (222)
Q Consensus 101 ~~~~~~~--------------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~D~v~~~~~~~~---- 161 (222)
+..++++ .+++.+...|..... .. ..+||+|++|||+-.
T Consensus 162 a~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~----------------------~~~~~~fDlIVSNPPYI~~~e~ 219 (1082)
T PLN02672 162 LYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC----------------------RDNNIELDRIVGCIPQILNPNP 219 (1082)
T ss_pred HHHcCcccccccccccccccccccEEEEECchhhhc----------------------cccCCceEEEEECCCcCCCcch
Confidence 9876542 135777777653221 01 236999999998521
Q ss_pred -------------------------------------HHHHHHHHHHcccCCeEEEEecCCCCcHHHHH-HHHHh
Q 047371 162 -------------------------------------LPQLADHIVSYAKPGAVVGISGILSEQLPRII-NRYSE 198 (222)
Q Consensus 162 -------------------------------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~-~~~~~ 198 (222)
+..+++++.++|+|||.+++. +...+...+. +.++.
T Consensus 220 ~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lE-iG~~q~~~v~~~l~~~ 293 (1082)
T PLN02672 220 EAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFN-MGGRPGQAVCERLFER 293 (1082)
T ss_pred hhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEE-ECccHHHHHHHHHHHH
Confidence 245678889999999998875 6777777777 46654
No 109
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=99.35 E-value=1.7e-11 Score=107.19 Aligned_cols=157 Identities=14% Similarity=0.111 Sum_probs=105.9
Q ss_pred eeEEeCCCcccccCCcchhHHHHHHHHhhhc-CCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcC
Q 047371 27 TNIILNPGLAFGTGEHATTKLCLLLLQSLIK-GGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNN 105 (222)
Q Consensus 27 ~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~-~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~ 105 (222)
..+.++|+..| +.+......+.+.+...+. .+.++||++||+|.+++.+++. ..+|+|+|.++.+++.|++|+..++
T Consensus 175 ~~~~~~~~sF~-Q~N~~~~e~l~~~v~~~~~~~~~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~ 252 (362)
T PRK05031 175 FIYRQVENSFT-QPNAAVNEKMLEWALDATKGSKGDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANG 252 (362)
T ss_pred EEEEeCCCCee-ccCHHHHHHHHHHHHHHhhcCCCeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhC
Confidence 45677776655 4455555555555555543 2357999999999999988876 4689999999999999999999888
Q ss_pred CCCCceeEEecCCcccccccccccccchhccccccccCCC-CCCCeeEEEeccccccH-HHHHHHHHHcccCCeEEEEec
Q 047371 106 IGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGIS-ETEEYDVVIANILLNPL-PQLADHIVSYAKPGAVVGISG 183 (222)
Q Consensus 106 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~D~v~~~~~~~~~-~~~l~~~~~~LkpgG~l~~~~ 183 (222)
+. ++.+...|+..+...+... ... ....... ...+||+|+.+||...+ .++++.+.+ |++.+|++|
T Consensus 253 ~~--~v~~~~~d~~~~l~~~~~~-~~~------~~~~~~~~~~~~~D~v~lDPPR~G~~~~~l~~l~~---~~~ivyvSC 320 (362)
T PRK05031 253 ID--NVQIIRMSAEEFTQAMNGV-REF------NRLKGIDLKSYNFSTIFVDPPRAGLDDETLKLVQA---YERILYISC 320 (362)
T ss_pred CC--cEEEEECCHHHHHHHHhhc-ccc------cccccccccCCCCCEEEECCCCCCCcHHHHHHHHc---cCCEEEEEe
Confidence 75 7889888875532100000 000 0000000 02258999999998653 445666654 799999999
Q ss_pred CCCCcHHHHHHHHH
Q 047371 184 ILSEQLPRIINRYS 197 (222)
Q Consensus 184 ~~~~~~~~~~~~~~ 197 (222)
.+....+++.....
T Consensus 321 ~p~tlarDl~~L~~ 334 (362)
T PRK05031 321 NPETLCENLETLSQ 334 (362)
T ss_pred CHHHHHHHHHHHcC
Confidence 88777777776543
No 110
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.34 E-value=9e-12 Score=100.79 Aligned_cols=111 Identities=23% Similarity=0.373 Sum_probs=82.2
Q ss_pred hHHHHHHHHhh-hcCCCcEEEEccCCCHHHHHHHHh-C-CCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccc
Q 047371 45 TKLCLLLLQSL-IKGGELFLDYGTGSGILGIAAIKF-G-AAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTF 121 (222)
Q Consensus 45 ~~~~~~~l~~~-~~~~~~vLD~G~G~G~~~~~la~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~ 121 (222)
+.....++..+ +++|++|||+|||+|+.+..++.. + ...|+++|.++..++.|++++...++. ++.+...|...-
T Consensus 58 P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~--nv~~~~gdg~~g 135 (209)
T PF01135_consen 58 PSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGID--NVEVVVGDGSEG 135 (209)
T ss_dssp HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTH--SEEEEES-GGGT
T ss_pred HHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccC--ceeEEEcchhhc
Confidence 34444444444 789999999999999999999886 3 357999999999999999999988875 888888876321
Q ss_pred ccccccccccchhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEe
Q 047371 122 TASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGIS 182 (222)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 182 (222)
+....+||.|++...... +-..+.+.||+||++++-
T Consensus 136 ----------------------~~~~apfD~I~v~~a~~~---ip~~l~~qL~~gGrLV~p 171 (209)
T PF01135_consen 136 ----------------------WPEEAPFDRIIVTAAVPE---IPEALLEQLKPGGRLVAP 171 (209)
T ss_dssp ----------------------TGGG-SEEEEEESSBBSS-----HHHHHTEEEEEEEEEE
T ss_pred ----------------------cccCCCcCEEEEeeccch---HHHHHHHhcCCCcEEEEE
Confidence 224668999999887753 345677889999999983
No 111
>PHA03412 putative methyltransferase; Provisional
Probab=99.34 E-value=1.6e-11 Score=100.30 Aligned_cols=111 Identities=15% Similarity=0.077 Sum_probs=77.7
Q ss_pred CCcchhHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHh----CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEe
Q 047371 40 GEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKF----GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHL 115 (222)
Q Consensus 40 ~~~~~~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~----~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~ 115 (222)
|.+.|+.-+...+......+.+|||+|||+|.++..+++. +..+|+++|+++.+++.|+++.. ++.+..
T Consensus 31 GqFfTP~~iAr~~~i~~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~-------~~~~~~ 103 (241)
T PHA03412 31 GAFFTPIGLARDFTIDACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP-------EATWIN 103 (241)
T ss_pred CccCCCHHHHHHHHHhccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc-------CCEEEE
Confidence 4444555453333211224679999999999999988764 34689999999999999997742 355666
Q ss_pred cCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc---------------HHHHHHHHHHcccCCeEEE
Q 047371 116 VPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP---------------LPQLADHIVSYAKPGAVVG 180 (222)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~---------------~~~~l~~~~~~LkpgG~l~ 180 (222)
.|..... ..++||+|++|||+.. ...++..+.+++++|+. +
T Consensus 104 ~D~~~~~-----------------------~~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-I 159 (241)
T PHA03412 104 ADALTTE-----------------------FDTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF-I 159 (241)
T ss_pred cchhccc-----------------------ccCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE-E
Confidence 6654321 2458999999999863 22367888887777765 4
Q ss_pred E
Q 047371 181 I 181 (222)
Q Consensus 181 ~ 181 (222)
+
T Consensus 160 L 160 (241)
T PHA03412 160 I 160 (241)
T ss_pred e
Confidence 4
No 112
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.34 E-value=3.4e-11 Score=99.51 Aligned_cols=128 Identities=19% Similarity=0.198 Sum_probs=99.1
Q ss_pred hcCCCcEEEEccCCCHHHHHHHHh--CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371 56 IKGGELFLDYGTGSGILGIAAIKF--GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV 133 (222)
Q Consensus 56 ~~~~~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 133 (222)
+.||++|+|.|+|+|.++..+++. +.++|+..|+.+..++.|++++..+++. +++++...|...--+ ..+
T Consensus 38 i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~-~~v~~~~~Dv~~~g~-----~~~-- 109 (247)
T PF08704_consen 38 IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLD-DNVTVHHRDVCEEGF-----DEE-- 109 (247)
T ss_dssp --TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCC-TTEEEEES-GGCG-------STT--
T ss_pred CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCC-CCceeEecceecccc-----ccc--
Confidence 789999999999999999999974 5689999999999999999999999986 589999888743210 000
Q ss_pred hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcc-cCCeEEEEecCCCCcHHHHHHHHHhh-hhccee
Q 047371 134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYA-KPGAVVGISGILSEQLPRIINRYSEF-LEDILV 205 (222)
Q Consensus 134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~L-kpgG~l~~~~~~~~~~~~~~~~~~~~-~~~~~~ 205 (222)
....+|.|+.+.|-. ...+..+.+.| |+||++++....-+|..+..+.+.+. |..+++
T Consensus 110 ------------~~~~~DavfLDlp~P--w~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~~~gf~~i~~ 169 (247)
T PF08704_consen 110 ------------LESDFDAVFLDLPDP--WEAIPHAKRALKKPGGRICCFSPCIEQVQKTVEALREHGFTDIET 169 (247)
T ss_dssp -------------TTSEEEEEEESSSG--GGGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHHHTTEEEEEE
T ss_pred ------------ccCcccEEEEeCCCH--HHHHHHHHHHHhcCCceEEEECCCHHHHHHHHHHHHHCCCeeeEE
Confidence 246799999987654 56788899999 99999999877888999999998885 655544
No 113
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.33 E-value=3.4e-11 Score=96.14 Aligned_cols=122 Identities=18% Similarity=0.178 Sum_probs=91.0
Q ss_pred CcchhHHHHHHHHhhhc---CCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecC
Q 047371 41 EHATTKLCLLLLQSLIK---GGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVP 117 (222)
Q Consensus 41 ~~~~~~~~~~~l~~~~~---~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~ 117 (222)
.++++..+.+.+-..+. ++.++||++||+|.+++.+++.+..+++++|.++.+++.+++|+..+++. +++.+...|
T Consensus 29 ~rpt~~~vrea~f~~l~~~~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~-~~~~~~~~D 107 (189)
T TIGR00095 29 TRPTTRVVRELFFNILRPEIQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSG-EQAEVVRNS 107 (189)
T ss_pred CCCchHHHHHHHHHHHHHhcCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCc-ccEEEEehh
Confidence 56777777766655432 58899999999999999999988789999999999999999999988875 467787777
Q ss_pred CcccccccccccccchhccccccccCCC-CCCCeeEEEecccccc--HHHHHHHHH--HcccCCeEEEEe
Q 047371 118 DRTFTASMNERVDGVVEYLSSHEIRGIS-ETEEYDVVIANILLNP--LPQLADHIV--SYAKPGAVVGIS 182 (222)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~D~v~~~~~~~~--~~~~l~~~~--~~LkpgG~l~~~ 182 (222)
...+.. .+. ....+|+|+.+||+.. ..++++.+. .+|+++|.+++.
T Consensus 108 ~~~~l~-------------------~~~~~~~~~dvv~~DPPy~~~~~~~~l~~l~~~~~l~~~~iiv~E 158 (189)
T TIGR00095 108 ALRALK-------------------FLAKKPTFDNVIYLDPPFFNGALQALLELCENNWILEDTVLIVVE 158 (189)
T ss_pred HHHHHH-------------------HhhccCCCceEEEECcCCCCCcHHHHHHHHHHCCCCCCCeEEEEE
Confidence 633210 000 1235899999999853 444555443 368899988875
No 114
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=99.33 E-value=2.9e-11 Score=105.41 Aligned_cols=157 Identities=16% Similarity=0.137 Sum_probs=106.0
Q ss_pred eeEEeCCCcccccCCcchhHHHHHHHHhhhc-CCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcC
Q 047371 27 TNIILNPGLAFGTGEHATTKLCLLLLQSLIK-GGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNN 105 (222)
Q Consensus 27 ~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~-~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~ 105 (222)
..+.++|+..| +.+......+.+.+.+... .+.++||+|||+|.+++.+++.. .+|+|+|+++.+++.|++|+..++
T Consensus 166 ~~~~~~~~~F~-Q~N~~~~~~l~~~v~~~~~~~~~~vlDl~~G~G~~sl~la~~~-~~v~~vE~~~~av~~a~~n~~~~~ 243 (353)
T TIGR02143 166 FIYRQVENSFT-QPNAAVNIKMLEWACEVTQGSKGDLLELYCGNGNFSLALAQNF-RRVLATEIAKPSVNAAQYNIAANN 243 (353)
T ss_pred EEEEECCCCcc-cCCHHHHHHHHHHHHHHhhcCCCcEEEEeccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHHHcC
Confidence 34666666544 4455555555555555543 24579999999999999888764 689999999999999999999998
Q ss_pred CCCCceeEEecCCcccccccccccccchhccccccccCCC-CCCCeeEEEeccccccH-HHHHHHHHHcccCCeEEEEec
Q 047371 106 IGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGIS-ETEEYDVVIANILLNPL-PQLADHIVSYAKPGAVVGISG 183 (222)
Q Consensus 106 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~D~v~~~~~~~~~-~~~l~~~~~~LkpgG~l~~~~ 183 (222)
+. ++.+...|...+.... . +....+ + ..... ....+|+|+.+||...+ ..+++.+.+ |++.+|++|
T Consensus 244 ~~--~v~~~~~d~~~~~~~~---~-~~~~~~-~--~~~~~~~~~~~d~v~lDPPR~G~~~~~l~~l~~---~~~ivYvsC 311 (353)
T TIGR02143 244 ID--NVQIIRMSAEEFTQAM---N-GVREFR-R--LKGIDLKSYNCSTIFVDPPRAGLDPDTCKLVQA---YERILYISC 311 (353)
T ss_pred CC--cEEEEEcCHHHHHHHH---h-hccccc-c--ccccccccCCCCEEEECCCCCCCcHHHHHHHHc---CCcEEEEEc
Confidence 85 7888888775442100 0 000000 0 00000 01248999999997653 455666654 799999999
Q ss_pred CCCCcHHHHHHHHH
Q 047371 184 ILSEQLPRIINRYS 197 (222)
Q Consensus 184 ~~~~~~~~~~~~~~ 197 (222)
.+....+++.....
T Consensus 312 ~p~tlaRDl~~L~~ 325 (353)
T TIGR02143 312 NPETLKANLEQLSE 325 (353)
T ss_pred CHHHHHHHHHHHhc
Confidence 99999999987653
No 115
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.33 E-value=4.2e-11 Score=95.34 Aligned_cols=122 Identities=20% Similarity=0.278 Sum_probs=82.4
Q ss_pred hcCCCcEEEEccCCCHHHHHHHHh--CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371 56 IKGGELFLDYGTGSGILGIAAIKF--GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV 133 (222)
Q Consensus 56 ~~~~~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 133 (222)
++++.+|||+|||+|.++..++.. +..+++++|+++.+ .. .++.+...+...... ...
T Consensus 30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~--~~i~~~~~d~~~~~~-----~~~-- 89 (188)
T TIGR00438 30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PI--ENVDFIRGDFTDEEV-----LNK-- 89 (188)
T ss_pred cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cC--CCceEEEeeCCChhH-----HHH--
Confidence 568999999999999999988764 34689999999854 11 245555555432210 000
Q ss_pred hccccccccCCCCCCCeeEEEecccc--------cc------HHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHhh
Q 047371 134 EYLSSHEIRGISETEEYDVVIANILL--------NP------LPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSEF 199 (222)
Q Consensus 134 ~~~~~~~~~~~~~~~~~D~v~~~~~~--------~~------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~ 199 (222)
+....+.++||+|+++... ++ ...++..+.+.|+|||.+++..+......++...+...
T Consensus 90 -------l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~~~ 162 (188)
T TIGR00438 90 -------IRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRKL 162 (188)
T ss_pred -------HHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHHhh
Confidence 0000145679999997531 11 25689999999999999999767777777777777666
Q ss_pred hhcce
Q 047371 200 LEDIL 204 (222)
Q Consensus 200 ~~~~~ 204 (222)
+...+
T Consensus 163 ~~~~~ 167 (188)
T TIGR00438 163 FEKVK 167 (188)
T ss_pred hceEE
Confidence 53333
No 116
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.32 E-value=3.1e-11 Score=97.49 Aligned_cols=97 Identities=14% Similarity=0.160 Sum_probs=73.0
Q ss_pred hcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371 56 IKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE 134 (222)
Q Consensus 56 ~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 134 (222)
.+++.+|||+|||+|..+..+++. +..+++|+|+|+.+++.|+++.. ++.+...+... ..
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~-------~~~~~~~d~~~-~~----------- 101 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP-------NINIIQGSLFD-PF----------- 101 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC-------CCcEEEeeccC-CC-----------
Confidence 456789999999999999988875 56799999999999999987642 33455554432 11
Q ss_pred ccccccccCCCCCCCeeEEEeccccccH-----HHHHHHHHHcccCCeEEEEecC
Q 047371 135 YLSSHEIRGISETEEYDVVIANILLNPL-----PQLADHIVSYAKPGAVVGISGI 184 (222)
Q Consensus 135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~~-----~~~l~~~~~~LkpgG~l~~~~~ 184 (222)
++++||+|+++..++++ ..+++++.+.+ ++++++.+.
T Consensus 102 -----------~~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~ 143 (204)
T TIGR03587 102 -----------KDNFFDLVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAEY 143 (204)
T ss_pred -----------CCCCEEEEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEe
Confidence 57789999999887664 45678888876 457777544
No 117
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.32 E-value=3.2e-11 Score=98.26 Aligned_cols=99 Identities=24% Similarity=0.389 Sum_probs=77.0
Q ss_pred cCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcc
Q 047371 57 KGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYL 136 (222)
Q Consensus 57 ~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (222)
.++.+|||+|||+|.++..++..+ .+++|+|+++.++..|++++...+.. .++.+...+....
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~~-~~v~gvD~s~~~i~~a~~~~~~~~~~-~~i~~~~~d~~~~--------------- 116 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKRG-AIVKAVDISEQMVQMARNRAQGRDVA-GNVEFEVNDLLSL--------------- 116 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCC-CceEEEECChhhC---------------
Confidence 357899999999999999998764 58999999999999999988766553 3677877766443
Q ss_pred ccccccCCCCCCCeeEEEecccccc-----HHHHHHHHHHcccCCeEEEEe
Q 047371 137 SSHEIRGISETEEYDVVIANILLNP-----LPQLADHIVSYAKPGAVVGIS 182 (222)
Q Consensus 137 ~~~~~~~~~~~~~~D~v~~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~ 182 (222)
+ ++||+|++...+.+ ...++.++.+.+++++++.+.
T Consensus 117 ---------~-~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~ 157 (219)
T TIGR02021 117 ---------C-GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFA 157 (219)
T ss_pred ---------C-CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 3 67999998665543 335688888888877666653
No 118
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=4.3e-11 Score=92.96 Aligned_cols=136 Identities=21% Similarity=0.318 Sum_probs=105.4
Q ss_pred CCcEEEEccCCCHHHHHHHHh--CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcc
Q 047371 59 GELFLDYGTGSGILGIAAIKF--GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYL 136 (222)
Q Consensus 59 ~~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (222)
.+-++|+|||+|..+..+++. +...+.++|+||.+++..++.+..++. ++..+..|... ++
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~---~~~~V~tdl~~----------~l---- 106 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV---HIDVVRTDLLS----------GL---- 106 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC---ccceeehhHHh----------hh----
Confidence 567999999999999988875 567899999999999999999888775 35555554321 11
Q ss_pred ccccccCCCCCCCeeEEEecccccc------------------------HHHHHHHHHHcccCCeEEEEecCCCCcHHHH
Q 047371 137 SSHEIRGISETEEYDVVIANILLNP------------------------LPQLADHIVSYAKPGAVVGISGILSEQLPRI 192 (222)
Q Consensus 137 ~~~~~~~~~~~~~~D~v~~~~~~~~------------------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~ 192 (222)
..+++|+++.|||+-. +..++.++-.+|.|.|.+|+..+..+...++
T Consensus 107 ---------~~~~VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei 177 (209)
T KOG3191|consen 107 ---------RNESVDVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKEI 177 (209)
T ss_pred ---------ccCCccEEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHHH
Confidence 3488999999999743 3457888889999999999998889999999
Q ss_pred HHHHHhh-h-hcceecccCCceEeecccCC
Q 047371 193 INRYSEF-L-EDILVSEKDDWRCVSGTKFS 220 (222)
Q Consensus 193 ~~~~~~~-~-~~~~~~~~~~w~~~~~~k~~ 220 (222)
.+.++.. + ..+-..++-+|.-+...|+.
T Consensus 178 ~k~l~~~g~~~~~~~~Rk~~~E~l~ilkf~ 207 (209)
T KOG3191|consen 178 LKILEKKGYGVRIAMQRKAGGETLSILKFT 207 (209)
T ss_pred HHHHhhcccceeEEEEEecCCceEEEEEEE
Confidence 9977765 3 33344567778777776654
No 119
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.31 E-value=1e-10 Score=96.35 Aligned_cols=138 Identities=15% Similarity=0.197 Sum_probs=95.5
Q ss_pred CcchhHHHHHHHHhh----hcCCCcEEEEccCCCHHHHHHHH-hCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEe
Q 047371 41 EHATTKLCLLLLQSL----IKGGELFLDYGTGSGILGIAAIK-FGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHL 115 (222)
Q Consensus 41 ~~~~~~~~~~~l~~~----~~~~~~vLD~G~G~G~~~~~la~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~ 115 (222)
..++...+...++.. ..++..++|+|||+|.+++.++. .+...++|+|.|+.++..|.+|+.++.+. .++.+..
T Consensus 127 RpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~-g~i~v~~ 205 (328)
T KOG2904|consen 127 RPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLS-GRIEVIH 205 (328)
T ss_pred CccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhc-CceEEEe
Confidence 344555555444433 22456899999999999998776 47789999999999999999999998887 4666664
Q ss_pred cCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc-----------------------------HHHHH
Q 047371 116 VPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP-----------------------------LPQLA 166 (222)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~-----------------------------~~~~l 166 (222)
...+.-.. ...++ ..++.|++++|||+-. +..+.
T Consensus 206 ~~me~d~~----~~~~l-------------~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~ 268 (328)
T KOG2904|consen 206 NIMESDAS----DEHPL-------------LEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYW 268 (328)
T ss_pred cccccccc----ccccc-------------ccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHH
Confidence 43221100 00001 5688999999999632 23467
Q ss_pred HHHHHcccCCeEEEEecCCCCcHHHHHHHH
Q 047371 167 DHIVSYAKPGAVVGISGILSEQLPRIINRY 196 (222)
Q Consensus 167 ~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~ 196 (222)
.-+.|+|+|||++.+......+-..+...+
T Consensus 269 ~~a~R~Lq~gg~~~le~~~~~~~~~lv~~~ 298 (328)
T KOG2904|consen 269 LLATRMLQPGGFEQLELVERKEHSYLVRIW 298 (328)
T ss_pred HhhHhhcccCCeEEEEecccccCcHHHHHH
Confidence 888999999999999755334444444443
No 120
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.31 E-value=4.5e-11 Score=93.61 Aligned_cols=99 Identities=19% Similarity=0.245 Sum_probs=77.6
Q ss_pred hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371 56 IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY 135 (222)
Q Consensus 56 ~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 135 (222)
..++.++||+|||+|.++..+++. ..+++++|+++.+++.+++++.. . .++++...|+..+..
T Consensus 11 ~~~~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~~~~~~~~~~~~--~--~~v~ii~~D~~~~~~------------ 73 (169)
T smart00650 11 LRPGDTVLEIGPGKGALTEELLER-AARVTAIEIDPRLAPRLREKFAA--A--DNLTVIHGDALKFDL------------ 73 (169)
T ss_pred CCCcCEEEEECCCccHHHHHHHhc-CCeEEEEECCHHHHHHHHHHhcc--C--CCEEEEECchhcCCc------------
Confidence 356789999999999999999887 47899999999999999988743 1 378888888765532
Q ss_pred cccccccCCCCCCCeeEEEeccccccHHHHHHHHHHc--ccCCeEEEE
Q 047371 136 LSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSY--AKPGAVVGI 181 (222)
Q Consensus 136 ~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~--LkpgG~l~~ 181 (222)
+...+|.|++|+|++....++..+.+. +.++|.+++
T Consensus 74 ----------~~~~~d~vi~n~Py~~~~~~i~~~l~~~~~~~~~~l~~ 111 (169)
T smart00650 74 ----------PKLQPYKVVGNLPYNISTPILFKLLEEPPAFRDAVLMV 111 (169)
T ss_pred ----------cccCCCEEEECCCcccHHHHHHHHHhcCCCcceEEEEE
Confidence 344689999999998766666666654 346777776
No 121
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.30 E-value=1.9e-11 Score=97.01 Aligned_cols=124 Identities=21% Similarity=0.265 Sum_probs=88.9
Q ss_pred CcchhHHHHHHHHhhhc----CCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEec
Q 047371 41 EHATTKLCLLLLQSLIK----GGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLV 116 (222)
Q Consensus 41 ~~~~~~~~~~~l~~~~~----~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~ 116 (222)
-.|++..+.+.+=..+. +|.++||++||+|.+++.+++.|+.+++.+|.++.+++..++|+...++. .++.....
T Consensus 21 ~RPT~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~-~~~~v~~~ 99 (183)
T PF03602_consen 21 TRPTTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLE-DKIRVIKG 99 (183)
T ss_dssp S-SSSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-G-GGEEEEES
T ss_pred cCCCcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCC-cceeeecc
Confidence 57777777776655533 58999999999999999999999999999999999999999999988876 35777776
Q ss_pred CCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc---HHHHHHHHH--HcccCCeEEEEec
Q 047371 117 PDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP---LPQLADHIV--SYAKPGAVVGISG 183 (222)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~---~~~~l~~~~--~~LkpgG~l~~~~ 183 (222)
|...+-. .. .....+||+|+++||+.. +.++++.+. .+|+++|.+++..
T Consensus 100 d~~~~l~-------~~-----------~~~~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~ 153 (183)
T PF03602_consen 100 DAFKFLL-------KL-----------AKKGEKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIIIEH 153 (183)
T ss_dssp SHHHHHH-------HH-----------HHCTS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEEEE
T ss_pred CHHHHHH-------hh-----------cccCCCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEEEe
Confidence 6432210 00 004678999999999975 256777776 7999999999864
No 122
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.29 E-value=6.8e-11 Score=95.83 Aligned_cols=102 Identities=22% Similarity=0.336 Sum_probs=80.5
Q ss_pred cCCCcEEEEccCCCHHHHHHHHhCC--CEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371 57 KGGELFLDYGTGSGILGIAAIKFGA--AMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE 134 (222)
Q Consensus 57 ~~~~~vLD~G~G~G~~~~~la~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 134 (222)
.++.+|||+|||+|..+..+++... .+++++|+++.+++.++++.. . ..++.+...+......
T Consensus 38 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~-~~~i~~~~~d~~~~~~----------- 102 (223)
T TIGR01934 38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---L-PLNIEFIQADAEALPF----------- 102 (223)
T ss_pred CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---c-CCCceEEecchhcCCC-----------
Confidence 3688999999999999998887643 589999999999999988765 1 1367777776654321
Q ss_pred ccccccccCCCCCCCeeEEEecccccc---HHHHHHHHHHcccCCeEEEEecC
Q 047371 135 YLSSHEIRGISETEEYDVVIANILLNP---LPQLADHIVSYAKPGAVVGISGI 184 (222)
Q Consensus 135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~ 184 (222)
+.++||+|+++..+++ ...+++.+.+.|+|||.+++.+.
T Consensus 103 -----------~~~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 103 -----------EDNSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEF 144 (223)
T ss_pred -----------CCCcEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEe
Confidence 4568999999776654 45689999999999999998654
No 123
>PHA03411 putative methyltransferase; Provisional
Probab=99.29 E-value=3.9e-11 Score=100.04 Aligned_cols=130 Identities=17% Similarity=0.171 Sum_probs=89.8
Q ss_pred CCcchhHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCC
Q 047371 40 GEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPD 118 (222)
Q Consensus 40 ~~~~~~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~ 118 (222)
|.+.++..+...+......+.+|||+|||+|.++..++.. +..+++++|+++.+++.++++.. ++.+...|.
T Consensus 46 G~FfTP~~i~~~f~~~~~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~-------~v~~v~~D~ 118 (279)
T PHA03411 46 GAFFTPEGLAWDFTIDAHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLP-------EAEWITSDV 118 (279)
T ss_pred eeEcCCHHHHHHHHhccccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc-------CCEEEECch
Confidence 4445555555333212234578999999999998887764 34799999999999999987631 456777766
Q ss_pred cccccccccccccchhccccccccCCCCCCCeeEEEecccccc-----------------------HHHHHHHHHHcccC
Q 047371 119 RTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP-----------------------LPQLADHIVSYAKP 175 (222)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~-----------------------~~~~l~~~~~~Lkp 175 (222)
..+. ...+||+|++|+|+.+ +.+++.....+|+|
T Consensus 119 ~e~~-----------------------~~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p 175 (279)
T PHA03411 119 FEFE-----------------------SNEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVP 175 (279)
T ss_pred hhhc-----------------------ccCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecC
Confidence 4431 3467999999999865 13466778899999
Q ss_pred CeEEEEe--c----CCCCcHHHHHHHHHhh
Q 047371 176 GAVVGIS--G----ILSEQLPRIINRYSEF 199 (222)
Q Consensus 176 gG~l~~~--~----~~~~~~~~~~~~~~~~ 199 (222)
+|.+++. . ..+-...+..+.+.+.
T Consensus 176 ~G~~~~~yss~~~y~~sl~~~~y~~~l~~~ 205 (279)
T PHA03411 176 TGSAGFAYSGRPYYDGTMKSNKYLKWSKQT 205 (279)
T ss_pred CceEEEEEeccccccccCCHHHHHHHHHhc
Confidence 9987662 1 1234456666666654
No 124
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=99.29 E-value=3.1e-11 Score=96.90 Aligned_cols=135 Identities=22% Similarity=0.324 Sum_probs=94.3
Q ss_pred CCCCCCCcceeEEeCCCcccccCCcchhHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHH
Q 047371 18 WSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKS 96 (222)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~ 96 (222)
+.+...+....+.++....|......+.+ .-+.+.++++..|+|++||.|.+++.+++. +.+.|+++|++|.+++.
T Consensus 64 ~~t~~~E~G~~f~~D~~kvyfs~rl~~Er---~Ri~~~v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~ 140 (200)
T PF02475_consen 64 TETIHKENGIRFKVDLSKVYFSPRLSTER---RRIANLVKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEY 140 (200)
T ss_dssp SEEEEEETTEEEEEETTTS---GGGHHHH---HHHHTC--TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHH
T ss_pred eEEEEEeCCEEEEEccceEEEccccHHHH---HHHHhcCCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHH
Confidence 45556667888999988766332222222 233345788999999999999999999983 45789999999999999
Q ss_pred HHHHHHhcCCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCC
Q 047371 97 AHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPG 176 (222)
Q Consensus 97 a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~Lkpg 176 (222)
+++++..+++. .++.....|...+. +.+.+|.|+++.|-... .++..+.+++++|
T Consensus 141 L~~Ni~lNkv~-~~i~~~~~D~~~~~-----------------------~~~~~drvim~lp~~~~-~fl~~~~~~~~~~ 195 (200)
T PF02475_consen 141 LKENIRLNKVE-NRIEVINGDAREFL-----------------------PEGKFDRVIMNLPESSL-EFLDAALSLLKEG 195 (200)
T ss_dssp HHHHHHHTT-T-TTEEEEES-GGG--------------------------TT-EEEEEE--TSSGG-GGHHHHHHHEEEE
T ss_pred HHHHHHHcCCC-CeEEEEcCCHHHhc-----------------------CccccCEEEECChHHHH-HHHHHHHHHhcCC
Confidence 99999999997 57888888876552 36789999999876643 6888899999999
Q ss_pred eEEE
Q 047371 177 AVVG 180 (222)
Q Consensus 177 G~l~ 180 (222)
|.+-
T Consensus 196 g~ih 199 (200)
T PF02475_consen 196 GIIH 199 (200)
T ss_dssp EEEE
T ss_pred cEEE
Confidence 8874
No 125
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.28 E-value=5e-11 Score=96.21 Aligned_cols=111 Identities=14% Similarity=0.203 Sum_probs=89.4
Q ss_pred cCCCcEEEEccCCCHHHHHHHHh--CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371 57 KGGELFLDYGTGSGILGIAAIKF--GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE 134 (222)
Q Consensus 57 ~~~~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 134 (222)
.+.++|||+||+.|+.++.+++. ..++|+.+|.++...+.|++++...++. +++++..+++..+...+.+
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~-~~I~~~~gda~~~l~~l~~------- 115 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLD-DRIEVIEGDALEVLPELAN------- 115 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGG-GGEEEEES-HHHHHHHHHH-------
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCC-CcEEEEEeccHhhHHHHHh-------
Confidence 36889999999999999999974 3579999999999999999999999986 6899999887543211000
Q ss_pred ccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecC
Q 047371 135 YLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGI 184 (222)
Q Consensus 135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 184 (222)
-.+.++||+|+.+..-..+..+++.+.++|+|||.+++...
T Consensus 116 ---------~~~~~~fD~VFiDa~K~~y~~y~~~~~~ll~~ggvii~DN~ 156 (205)
T PF01596_consen 116 ---------DGEEGQFDFVFIDADKRNYLEYFEKALPLLRPGGVIIADNV 156 (205)
T ss_dssp ---------TTTTTSEEEEEEESTGGGHHHHHHHHHHHEEEEEEEEEETT
T ss_pred ---------ccCCCceeEEEEcccccchhhHHHHHhhhccCCeEEEEccc
Confidence 00246899999998888899999999999999999999533
No 126
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.28 E-value=2.1e-11 Score=102.25 Aligned_cols=103 Identities=13% Similarity=0.187 Sum_probs=71.1
Q ss_pred CCCcEEEEccCCCH----HHHHHHHh-C-----CCEEEEEeCChHHHHHHHHHHHh----cCCCC---------------
Q 047371 58 GGELFLDYGTGSGI----LGIAAIKF-G-----AAMFVGVDIDPQVIKSAHQNAAL----NNIGP--------------- 108 (222)
Q Consensus 58 ~~~~vLD~G~G~G~----~~~~la~~-~-----~~~v~gvD~s~~~l~~a~~~~~~----~~~~~--------------- 108 (222)
++.+|||+|||+|. +++.+++. + ..+|+|+|+|+.+++.|++.+.. .++..
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 35699999999996 45555543 1 35899999999999999986421 11110
Q ss_pred ------CceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEeccccccH-----HHHHHHHHHcccCCe
Q 047371 109 ------KKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPL-----PQLADHIVSYAKPGA 177 (222)
Q Consensus 109 ------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~-----~~~l~~~~~~LkpgG 177 (222)
.++.|...|.... ..+.++||+|+|...++++ ..+++++++.|+|||
T Consensus 179 v~~~ir~~V~F~~~dl~~~----------------------~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG 236 (264)
T smart00138 179 VKPELKERVRFAKHNLLAE----------------------SPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGG 236 (264)
T ss_pred EChHHhCcCEEeeccCCCC----------------------CCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCe
Confidence 1334444443322 1246789999997666543 358999999999999
Q ss_pred EEEEe
Q 047371 178 VVGIS 182 (222)
Q Consensus 178 ~l~~~ 182 (222)
++++.
T Consensus 237 ~L~lg 241 (264)
T smart00138 237 YLFLG 241 (264)
T ss_pred EEEEE
Confidence 99994
No 127
>PLN02366 spermidine synthase
Probab=99.28 E-value=2.9e-10 Score=97.12 Aligned_cols=144 Identities=16% Similarity=0.144 Sum_probs=101.6
Q ss_pred hcCCCcEEEEccCCCHHHHHHHHhC-CCEEEEEeCChHHHHHHHHHHHhc--CCCCCceeEEecCCcccccccccccccc
Q 047371 56 IKGGELFLDYGTGSGILGIAAIKFG-AAMFVGVDIDPQVIKSAHQNAALN--NIGPKKIKLHLVPDRTFTASMNERVDGV 132 (222)
Q Consensus 56 ~~~~~~vLD~G~G~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 132 (222)
.+++++||++|||.|..+..+++.+ ..+++.+|+++.+++.|++.+... ++...++++...|+..+.. .
T Consensus 89 ~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~-------~- 160 (308)
T PLN02366 89 IPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLK-------N- 160 (308)
T ss_pred CCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHh-------h-
Confidence 4567899999999999999998875 468999999999999999987542 3444688999888754421 0
Q ss_pred hhccccccccCCCCCCCeeEEEecccccc-------HHHHHHHHHHcccCCeEEEEe-c--C-CCCcHHHHHHHHHhhhh
Q 047371 133 VEYLSSHEIRGISETEEYDVVIANILLNP-------LPQLADHIVSYAKPGAVVGIS-G--I-LSEQLPRIINRYSEFLE 201 (222)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~D~v~~~~~~~~-------~~~~l~~~~~~LkpgG~l~~~-~--~-~~~~~~~~~~~~~~~~~ 201 (222)
.+.++||+|+++..-.. ..++++.+.+.|+|||.++.. + + .......+.+.+.+.|.
T Consensus 161 ------------~~~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~s~~~~~~~~~~i~~tl~~~F~ 228 (308)
T PLN02366 161 ------------APEGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQAESMWLHMDLIEDLIAICRETFK 228 (308)
T ss_pred ------------ccCCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcCCcccchHHHHHHHHHHHHHCC
Confidence 03567999999753311 346899999999999999873 1 1 22334455666666662
Q ss_pred -cc-------eecccCCceEeecccC
Q 047371 202 -DI-------LVSEKDDWRCVSGTKF 219 (222)
Q Consensus 202 -~~-------~~~~~~~w~~~~~~k~ 219 (222)
.+ +....+.|.-+.+.|.
T Consensus 229 ~~v~~~~~~vPsy~~g~w~f~~as~~ 254 (308)
T PLN02366 229 GSVNYAWTTVPTYPSGVIGFVLCSKE 254 (308)
T ss_pred CceeEEEecCCCcCCCceEEEEEECC
Confidence 22 2234477877777664
No 128
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=99.28 E-value=3.6e-11 Score=104.76 Aligned_cols=163 Identities=18% Similarity=0.182 Sum_probs=98.9
Q ss_pred ceeEEeCCCcccccCCcchhHHHHHHHHhhhcC-CCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhc
Q 047371 26 ATNIILNPGLAFGTGEHATTKLCLLLLQSLIKG-GELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALN 104 (222)
Q Consensus 26 ~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~-~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~ 104 (222)
...+.++|+..|.. +......+.+.+...+++ +..+||+.||.|.+++.++... .+|+|+|+++.+++.|+.|+..+
T Consensus 164 ~~~~~~~~~sFfQv-N~~~~~~l~~~~~~~l~~~~~~vlDlycG~G~fsl~la~~~-~~V~gvE~~~~av~~A~~Na~~N 241 (352)
T PF05958_consen 164 GLSFRISPGSFFQV-NPEQNEKLYEQALEWLDLSKGDVLDLYCGVGTFSLPLAKKA-KKVIGVEIVEEAVEDARENAKLN 241 (352)
T ss_dssp TEEEEEETTS---S-BHHHHHHHHHHHHHHCTT-TTEEEEES-TTTCCHHHHHCCS-SEEEEEES-HHHHHHHHHHHHHT
T ss_pred ceEEEECCCcCccC-cHHHHHHHHHHHHHHhhcCCCcEEEEeecCCHHHHHHHhhC-CeEEEeeCCHHHHHHHHHHHHHc
Confidence 35678888876644 444444454444444332 3379999999999999998774 78999999999999999999999
Q ss_pred CCCCCceeEEecCCcccccccccccccchhccccccccCC-CCCCCeeEEEeccccccHHH-HHHHHHHcccCCeEEEEe
Q 047371 105 NIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGI-SETEEYDVVIANILLNPLPQ-LADHIVSYAKPGAVVGIS 182 (222)
Q Consensus 105 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~v~~~~~~~~~~~-~l~~~~~~LkpgG~l~~~ 182 (222)
++. ++++...+++.+...+... +.-..+... .....+|+|+.+||...+.. +++.+. ++.-.+|+|
T Consensus 242 ~i~--n~~f~~~~~~~~~~~~~~~-------r~~~~~~~~~~~~~~~d~vilDPPR~G~~~~~~~~~~---~~~~ivYvS 309 (352)
T PF05958_consen 242 GID--NVEFIRGDAEDFAKALAKA-------REFNRLKGIDLKSFKFDAVILDPPRAGLDEKVIELIK---KLKRIVYVS 309 (352)
T ss_dssp T----SEEEEE--SHHCCCHHCCS--------GGTTGGGS-GGCTTESEEEE---TT-SCHHHHHHHH---HSSEEEEEE
T ss_pred CCC--cceEEEeeccchhHHHHhh-------HHHHhhhhhhhhhcCCCEEEEcCCCCCchHHHHHHHh---cCCeEEEEE
Confidence 986 8999887765542111000 000000000 02346899999999877654 444443 346789999
Q ss_pred cCCCCcHHHHHHHHHhhhhcc
Q 047371 183 GILSEQLPRIINRYSEFLEDI 203 (222)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~ 203 (222)
|.+....+++.... +.+...
T Consensus 310 CnP~tlaRDl~~L~-~~y~~~ 329 (352)
T PF05958_consen 310 CNPATLARDLKILK-EGYKLE 329 (352)
T ss_dssp S-HHHHHHHHHHHH-CCEEEE
T ss_pred CCHHHHHHHHHHHh-hcCEEE
Confidence 99998899997654 444333
No 129
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=5e-11 Score=93.36 Aligned_cols=108 Identities=26% Similarity=0.391 Sum_probs=80.4
Q ss_pred CCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccc
Q 047371 58 GGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLS 137 (222)
Q Consensus 58 ~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (222)
.|++|+|+|||+|.+++-++-.|...|+|+|+++++++.+++|+...+ .++.+...|...+
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~---g~v~f~~~dv~~~---------------- 105 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELL---GDVEFVVADVSDF---------------- 105 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhC---CceEEEEcchhhc----------------
Confidence 478899999999999999988998999999999999999999998733 4789999888665
Q ss_pred cccccCCCCCCCeeEEEeccccccH-----HHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHh
Q 047371 138 SHEIRGISETEEYDVVIANILLNPL-----PQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSE 198 (222)
Q Consensus 138 ~~~~~~~~~~~~~D~v~~~~~~~~~-----~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~ 198 (222)
..++|.+++|||+... ..++..+.+.- -.+|. +......++...+..
T Consensus 106 ---------~~~~dtvimNPPFG~~~rhaDr~Fl~~Ale~s---~vVYs--iH~a~~~~f~~~~~~ 157 (198)
T COG2263 106 ---------RGKFDTVIMNPPFGSQRRHADRPFLLKALEIS---DVVYS--IHKAGSRDFVEKFAA 157 (198)
T ss_pred ---------CCccceEEECCCCccccccCCHHHHHHHHHhh---heEEE--eeccccHHHHHHHHH
Confidence 5678999999999653 23555555433 23333 333334444444444
No 130
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.27 E-value=9.2e-11 Score=95.30 Aligned_cols=117 Identities=15% Similarity=0.132 Sum_probs=81.2
Q ss_pred cCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCC-------------CCceeEEecCCccccc
Q 047371 57 KGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIG-------------PKKIKLHLVPDRTFTA 123 (222)
Q Consensus 57 ~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~-------------~~~v~~~~~~~~~~~~ 123 (222)
+++.+|||+|||.|..+..+++.| .+|+|+|+|+.+++.+.+.. ++. ..++++...|...+..
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~G-~~V~gvD~S~~Ai~~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~ 108 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQG-HRVLGVELSEIAVEQFFAEN---GLTPTVTQQGEFTRYRAGNIEIFCGDFFALTA 108 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhCC-CeEEEEeCCHHHHHHHHHHc---CCCcceeccccceeeecCceEEEEccCCCCCc
Confidence 467899999999999999999987 47999999999999864321 211 1256677776654421
Q ss_pred ccccccccchhccccccccCCCCCCCeeEEEecccccc-----HHHHHHHHHHcccCCeEEEEecCC-----------CC
Q 047371 124 SMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP-----LPQLADHIVSYAKPGAVVGISGIL-----------SE 187 (222)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~~-----------~~ 187 (222)
...++||.|+....+++ ...+++.+.++|||||.+++.++. .-
T Consensus 109 ---------------------~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~~gpp~~~ 167 (213)
T TIGR03840 109 ---------------------ADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEMAGPPFSV 167 (213)
T ss_pred ---------------------ccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCCCCcCCCC
Confidence 01356888887655444 345899999999999976653221 23
Q ss_pred cHHHHHHHHHh
Q 047371 188 QLPRIINRYSE 198 (222)
Q Consensus 188 ~~~~~~~~~~~ 198 (222)
+..++.+.+..
T Consensus 168 ~~~eL~~~f~~ 178 (213)
T TIGR03840 168 SPAEVEALYGG 178 (213)
T ss_pred CHHHHHHHhcC
Confidence 44566666654
No 131
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.26 E-value=7.5e-11 Score=93.06 Aligned_cols=104 Identities=18% Similarity=0.199 Sum_probs=77.0
Q ss_pred HHHHhhhcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccccccccccc
Q 047371 50 LLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERV 129 (222)
Q Consensus 50 ~~l~~~~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 129 (222)
+.+.+.++||.+|||+|||.|.+...|.+.......|+|++++.+..+.++ |+ .++..|.+.- +
T Consensus 5 ~~I~~~I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r----Gv-----~Viq~Dld~g-------L 68 (193)
T PF07021_consen 5 QIIAEWIEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR----GV-----SVIQGDLDEG-------L 68 (193)
T ss_pred HHHHHHcCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc----CC-----CEEECCHHHh-------H
Confidence 445566889999999999999999999887778999999999988877653 43 4777766431 1
Q ss_pred ccchhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEe
Q 047371 130 DGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGIS 182 (222)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 182 (222)
... ++++||+|+++..+..+...-.-+..+|+-|...+++
T Consensus 69 ~~f-------------~d~sFD~VIlsqtLQ~~~~P~~vL~EmlRVgr~~IVs 108 (193)
T PF07021_consen 69 ADF-------------PDQSFDYVILSQTLQAVRRPDEVLEEMLRVGRRAIVS 108 (193)
T ss_pred hhC-------------CCCCccEEehHhHHHhHhHHHHHHHHHHHhcCeEEEE
Confidence 111 7899999999988877655444444455666666664
No 132
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=99.26 E-value=9.2e-11 Score=100.71 Aligned_cols=145 Identities=19% Similarity=0.238 Sum_probs=113.2
Q ss_pred CCCCCCCcceeEEeCCCcccccCCcchhHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHH
Q 047371 18 WSTPPDVQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSA 97 (222)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a 97 (222)
.+|....+.+.|.++++..|-+....+.+. -+.+.+.+|.+|+|+.||.|.+++.+|+.+...|+++|+||.+++.+
T Consensus 151 teTihrE~G~~f~vD~~Kv~Fsprl~~ER~---Rva~~v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L 227 (341)
T COG2520 151 TETIHRENGCRFKVDVAKVYFSPRLSTERA---RVAELVKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYL 227 (341)
T ss_pred ceEEEecCCEEEEEchHHeEECCCchHHHH---HHHhhhcCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHH
Confidence 456667778999999997653333333332 22344668999999999999999999999877799999999999999
Q ss_pred HHHHHhcCCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCe
Q 047371 98 HQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGA 177 (222)
Q Consensus 98 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG 177 (222)
++|++.|+++ ..+....+|...+.. ..+.+|-|+++.+.. ..+++..+.+.+++||
T Consensus 228 ~eNi~LN~v~-~~v~~i~gD~rev~~----------------------~~~~aDrIim~~p~~-a~~fl~~A~~~~k~~g 283 (341)
T COG2520 228 KENIRLNKVE-GRVEPILGDAREVAP----------------------ELGVADRIIMGLPKS-AHEFLPLALELLKDGG 283 (341)
T ss_pred HHHHHhcCcc-ceeeEEeccHHHhhh----------------------ccccCCEEEeCCCCc-chhhHHHHHHHhhcCc
Confidence 9999999997 358888888766532 237899999988764 4578888999999999
Q ss_pred EEEEecCCCCcH
Q 047371 178 VVGISGILSEQL 189 (222)
Q Consensus 178 ~l~~~~~~~~~~ 189 (222)
.+-+..+..+..
T Consensus 284 ~iHyy~~~~e~~ 295 (341)
T COG2520 284 IIHYYEFVPEDD 295 (341)
T ss_pred EEEEEeccchhh
Confidence 998876655444
No 133
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.25 E-value=1.5e-10 Score=99.41 Aligned_cols=109 Identities=17% Similarity=0.250 Sum_probs=81.4
Q ss_pred HHHHHHHhh-hcCCCcEEEEccCCCHHHHHHHHhC--CCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccccc
Q 047371 47 LCLLLLQSL-IKGGELFLDYGTGSGILGIAAIKFG--AAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTA 123 (222)
Q Consensus 47 ~~~~~l~~~-~~~~~~vLD~G~G~G~~~~~la~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~ 123 (222)
+...+++.. ++++++|||+|||+|.++..+++.. ..+|+++|+++.+++.|++++..+++. ++.+...|.....
T Consensus 68 l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~--nV~~i~gD~~~~~- 144 (322)
T PRK13943 68 LMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIE--NVIFVCGDGYYGV- 144 (322)
T ss_pred HHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCC--cEEEEeCChhhcc-
Confidence 333443333 5678999999999999999988752 247999999999999999999888874 6777777653221
Q ss_pred ccccccccchhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEe
Q 047371 124 SMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGIS 182 (222)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 182 (222)
....+||+|++..... .....+.+.|+|||.+++.
T Consensus 145 ---------------------~~~~~fD~Ii~~~g~~---~ip~~~~~~LkpgG~Lvv~ 179 (322)
T PRK13943 145 ---------------------PEFAPYDVIFVTVGVD---EVPETWFTQLKEGGRVIVP 179 (322)
T ss_pred ---------------------cccCCccEEEECCchH---HhHHHHHHhcCCCCEEEEE
Confidence 1345799999876543 3445678899999998874
No 134
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.25 E-value=1.6e-10 Score=98.79 Aligned_cols=103 Identities=18% Similarity=0.212 Sum_probs=81.3
Q ss_pred hcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371 56 IKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE 134 (222)
Q Consensus 56 ~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 134 (222)
.+++.+|||+|||+|.+++.+++. +..+++++|. +.+++.+++++...++. +++++...|....
T Consensus 147 ~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~-~rv~~~~~d~~~~------------- 211 (306)
T TIGR02716 147 LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVA-DRMRGIAVDIYKE------------- 211 (306)
T ss_pred CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCcc-ceEEEEecCccCC-------------
Confidence 356789999999999999988875 5678999998 78999999999888876 4788888876432
Q ss_pred ccccccccCCCCCCCeeEEEeccccccH-----HHHHHHHHHcccCCeEEEEecC
Q 047371 135 YLSSHEIRGISETEEYDVVIANILLNPL-----PQLADHIVSYAKPGAVVGISGI 184 (222)
Q Consensus 135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~~-----~~~l~~~~~~LkpgG~l~~~~~ 184 (222)
+...+|++++...++.. ..+++++++.|+|||.+++.++
T Consensus 212 -----------~~~~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 212 -----------SYPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred -----------CCCCCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 12236998876655532 3589999999999999998754
No 135
>PRK06202 hypothetical protein; Provisional
Probab=99.25 E-value=5.8e-11 Score=97.59 Aligned_cols=99 Identities=25% Similarity=0.373 Sum_probs=72.2
Q ss_pred cCCCcEEEEccCCCHHHHHHHHh----C-CCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccccccccccccc
Q 047371 57 KGGELFLDYGTGSGILGIAAIKF----G-AAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDG 131 (222)
Q Consensus 57 ~~~~~vLD~G~G~G~~~~~la~~----~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 131 (222)
.++.+|||+|||+|.++..+++. + ..+++|+|+++.+++.|+++....+ +.+...+.+.+..
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~-----~~~~~~~~~~l~~-------- 125 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPG-----VTFRQAVSDELVA-------- 125 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCC-----CeEEEEecccccc--------
Confidence 35679999999999998887752 2 3589999999999999988754333 3344444433311
Q ss_pred chhccccccccCCCCCCCeeEEEeccccccHH-----HHHHHHHHcccCCeEEEEecC
Q 047371 132 VVEYLSSHEIRGISETEEYDVVIANILLNPLP-----QLADHIVSYAKPGAVVGISGI 184 (222)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~-----~~l~~~~~~LkpgG~l~~~~~ 184 (222)
++++||+|+++..+++.. .+++++.+.++ |.+++..+
T Consensus 126 --------------~~~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl 167 (232)
T PRK06202 126 --------------EGERFDVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDL 167 (232)
T ss_pred --------------cCCCccEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEecc
Confidence 457899999999888743 47899999988 45555443
No 136
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=99.24 E-value=2.2e-10 Score=90.25 Aligned_cols=125 Identities=23% Similarity=0.263 Sum_probs=95.1
Q ss_pred cCCcchhHHHHHHHHhhhc----CCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEE
Q 047371 39 TGEHATTKLCLLLLQSLIK----GGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLH 114 (222)
Q Consensus 39 ~~~~~~~~~~~~~l~~~~~----~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~ 114 (222)
.+-.|++..+.+.+=..+. .|.++||+.+|+|.+++.+++.+...++.+|.+..++...++|+...++. .+..+.
T Consensus 20 ~~~RPT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~-~~~~~~ 98 (187)
T COG0742 20 PGTRPTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLE-GEARVL 98 (187)
T ss_pred CCcCCCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCc-cceEEE
Confidence 3467888888887765543 47899999999999999999999999999999999999999999988866 467777
Q ss_pred ecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc--HH--HHHHH--HHHcccCCeEEEEec
Q 047371 115 LVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP--LP--QLADH--IVSYAKPGAVVGISG 183 (222)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~--~~--~~l~~--~~~~LkpgG~l~~~~ 183 (222)
..|+..+. .+....++||+|+.+||++. .. ..+.. -..+|+|+|.+++..
T Consensus 99 ~~da~~~L-------------------~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~ 154 (187)
T COG0742 99 RNDALRAL-------------------KQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEH 154 (187)
T ss_pred eecHHHHH-------------------HhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEe
Confidence 77665321 11112335999999999983 21 12222 457799999999963
No 137
>PTZ00146 fibrillarin; Provisional
Probab=99.24 E-value=7.8e-10 Score=93.18 Aligned_cols=104 Identities=18% Similarity=0.110 Sum_probs=73.0
Q ss_pred hcCCCcEEEEccCCCHHHHHHHHh--CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371 56 IKGGELFLDYGTGSGILGIAAIKF--GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV 133 (222)
Q Consensus 56 ~~~~~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 133 (222)
++++++|||+|||+|.++..++.. +...|+++|+++.+++.....+... .++.+...|+..... ...
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r----~NI~~I~~Da~~p~~------y~~- 198 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR----PNIVPIIEDARYPQK------YRM- 198 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc----CCCEEEECCccChhh------hhc-
Confidence 678999999999999999999986 2468999999988665544433221 256676666532100 000
Q ss_pred hccccccccCCCCCCCeeEEEecccccc-HHHHHHHHHHcccCCeEEEEe
Q 047371 134 EYLSSHEIRGISETEEYDVVIANILLNP-LPQLADHIVSYAKPGAVVGIS 182 (222)
Q Consensus 134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~-~~~~l~~~~~~LkpgG~l~~~ 182 (222)
..+.||+|+++....+ ...++.++.+.|||||++++.
T Consensus 199 ------------~~~~vDvV~~Dva~pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 199 ------------LVPMVDVIFADVAQPDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred ------------ccCCCCEEEEeCCCcchHHHHHHHHHHhccCCCEEEEE
Confidence 2347999999775433 334567899999999999983
No 138
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.23 E-value=2.9e-10 Score=92.59 Aligned_cols=103 Identities=24% Similarity=0.336 Sum_probs=80.3
Q ss_pred CCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccc
Q 047371 58 GGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLS 137 (222)
Q Consensus 58 ~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (222)
.+.+|||+|||+|.++..+++.+ .+++++|.++.+++.++.++...+.. ++.+...+......
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~-~~v~~iD~s~~~~~~a~~~~~~~~~~--~~~~~~~d~~~~~~-------------- 107 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLG-ANVTGIDASEENIEVAKLHAKKDPLL--KIEYRCTSVEDLAE-------------- 107 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHHcCCC--ceEEEeCCHHHhhc--------------
Confidence 37799999999999999888765 46999999999999999988766643 46666665543321
Q ss_pred cccccCCCCCCCeeEEEecccccc---HHHHHHHHHHcccCCeEEEEecC
Q 047371 138 SHEIRGISETEEYDVVIANILLNP---LPQLADHIVSYAKPGAVVGISGI 184 (222)
Q Consensus 138 ~~~~~~~~~~~~~D~v~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~ 184 (222)
...++||+|+++..+++ ...+++.+.+.|+|||.+++...
T Consensus 108 -------~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 108 -------KGAKSFDVVTCMEVLEHVPDPQAFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred -------CCCCCccEEEehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEec
Confidence 02368999999876654 56689999999999999988654
No 139
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.23 E-value=5.6e-10 Score=93.92 Aligned_cols=141 Identities=16% Similarity=0.156 Sum_probs=95.6
Q ss_pred cCCCcEEEEccCCCHHHHHHHHhC-CCEEEEEeCChHHHHHHHHHHHhcC--CCCCceeEEecCCcccccccccccccch
Q 047371 57 KGGELFLDYGTGSGILGIAAIKFG-AAMFVGVDIDPQVIKSAHQNAALNN--IGPKKIKLHLVPDRTFTASMNERVDGVV 133 (222)
Q Consensus 57 ~~~~~vLD~G~G~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 133 (222)
+.+++||++|||+|.++..+++.+ ..+++++|+++.+++.|++.+...+ +...++++...|+..+..
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~---------- 140 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLA---------- 140 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHH----------
Confidence 456799999999999998887764 5789999999999999999875432 222466666665533210
Q ss_pred hccccccccCCCCCCCeeEEEeccccc--c-----HHHHHHHHHHcccCCeEEEEecC-CC---CcHHHHHHHHHhhhhc
Q 047371 134 EYLSSHEIRGISETEEYDVVIANILLN--P-----LPQLADHIVSYAKPGAVVGISGI-LS---EQLPRIINRYSEFLED 202 (222)
Q Consensus 134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~--~-----~~~~l~~~~~~LkpgG~l~~~~~-~~---~~~~~~~~~~~~~~~~ 202 (222)
. ..++||+|+++.+.. . ..++++.+.+.|+|||.+++... .. .....+.+.+...|..
T Consensus 141 ---------~--~~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~tl~~~F~~ 209 (270)
T TIGR00417 141 ---------D--TENTFDVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQSESPWIQLELITDLKRDVKEAFPI 209 (270)
T ss_pred ---------h--CCCCccEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcCCCcccCHHHHHHHHHHHHHHCCC
Confidence 0 246899999976521 1 35678999999999999998522 11 2223333445555544
Q ss_pred cee-------cccCCceEeeccc
Q 047371 203 ILV-------SEKDDWRCVSGTK 218 (222)
Q Consensus 203 ~~~-------~~~~~w~~~~~~k 218 (222)
... ...+.|.-+.+.|
T Consensus 210 v~~~~~~vp~~~~g~~~~~~as~ 232 (270)
T TIGR00417 210 TEYYTANIPTYPSGLWTFTIGSK 232 (270)
T ss_pred eEEEEEEcCccccchhEEEEEEC
Confidence 432 2347798887776
No 140
>PLN02476 O-methyltransferase
Probab=99.23 E-value=1.8e-10 Score=96.76 Aligned_cols=109 Identities=14% Similarity=0.200 Sum_probs=88.9
Q ss_pred cCCCcEEEEccCCCHHHHHHHHh--CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371 57 KGGELFLDYGTGSGILGIAAIKF--GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE 134 (222)
Q Consensus 57 ~~~~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 134 (222)
.++++|||+|+++|..++.++.. +.++++++|.++..++.|++++...|+. +++++..+++..... .+
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~-~~I~li~GdA~e~L~-------~l-- 186 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVS-HKVNVKHGLAAESLK-------SM-- 186 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEEcCHHHHHH-------HH--
Confidence 35889999999999999999874 3468999999999999999999999997 689999888754311 00
Q ss_pred ccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEe
Q 047371 135 YLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGIS 182 (222)
Q Consensus 135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 182 (222)
......++||+|+.+..-..+.++++.+.++|+|||.+++.
T Consensus 187 -------~~~~~~~~FD~VFIDa~K~~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 187 -------IQNGEGSSYDFAFVDADKRMYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred -------HhcccCCCCCEEEECCCHHHHHHHHHHHHHhcCCCcEEEEe
Confidence 00002468999999988878899999999999999999984
No 141
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.23 E-value=9e-11 Score=106.11 Aligned_cols=100 Identities=22% Similarity=0.272 Sum_probs=77.8
Q ss_pred CCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccc
Q 047371 58 GGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLS 137 (222)
Q Consensus 58 ~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (222)
++.+|||+|||+|.++..+++.. .+++|+|+++.+++.++... +.. .++.+...+...... +.
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~~-~~v~giD~s~~~l~~a~~~~---~~~-~~i~~~~~d~~~~~~-------~~----- 99 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKKA-GQVIALDFIESVIKKNESIN---GHY-KNVKFMCADVTSPDL-------NI----- 99 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHh---ccC-CceEEEEeccccccc-------CC-----
Confidence 56799999999999999998874 68999999999998876532 211 367777777642110 01
Q ss_pred cccccCCCCCCCeeEEEeccccccH-----HHHHHHHHHcccCCeEEEEe
Q 047371 138 SHEIRGISETEEYDVVIANILLNPL-----PQLADHIVSYAKPGAVVGIS 182 (222)
Q Consensus 138 ~~~~~~~~~~~~~D~v~~~~~~~~~-----~~~l~~~~~~LkpgG~l~~~ 182 (222)
+.++||+|+++.+++++ ..+++++.+.|||||++++.
T Consensus 100 --------~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~ 141 (475)
T PLN02336 100 --------SDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFR 141 (475)
T ss_pred --------CCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 56789999999888763 46899999999999999885
No 142
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=99.22 E-value=4.6e-10 Score=88.86 Aligned_cols=104 Identities=23% Similarity=0.314 Sum_probs=75.5
Q ss_pred hcCCCcEEEEccCCCHHHHHHHHh-CCC---------EEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccccccc
Q 047371 56 IKGGELFLDYGTGSGILGIAAIKF-GAA---------MFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASM 125 (222)
Q Consensus 56 ~~~~~~vLD~G~G~G~~~~~la~~-~~~---------~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 125 (222)
.+++..+||..||+|.+.+..+.. ... +++|.|+++.+++.|+.|+...++. ..+.+...|...+..
T Consensus 26 ~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~-~~i~~~~~D~~~l~~-- 102 (179)
T PF01170_consen 26 WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVE-DYIDFIQWDARELPL-- 102 (179)
T ss_dssp --TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-C-GGEEEEE--GGGGGG--
T ss_pred CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccC-CceEEEecchhhccc--
Confidence 567899999999999999987754 222 3899999999999999999988886 467888777766532
Q ss_pred ccccccchhccccccccCCCCCCCeeEEEecccccc-----------HHHHHHHHHHcccCCeEEEEe
Q 047371 126 NERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP-----------LPQLADHIVSYAKPGAVVGIS 182 (222)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~-----------~~~~l~~~~~~LkpgG~l~~~ 182 (222)
..+.+|+|++|||+.. +..+++.+.+.+++..++++.
T Consensus 103 --------------------~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~ 150 (179)
T PF01170_consen 103 --------------------PDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTT 150 (179)
T ss_dssp --------------------TTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEE
T ss_pred --------------------ccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Confidence 5678999999999864 456789999999995444443
No 143
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.22 E-value=2e-10 Score=94.22 Aligned_cols=113 Identities=26% Similarity=0.349 Sum_probs=83.4
Q ss_pred HHHHHHHhh--hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccc
Q 047371 47 LCLLLLQSL--IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTAS 124 (222)
Q Consensus 47 ~~~~~l~~~--~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~ 124 (222)
...+++... ..++.+|||+|||+|.++..+++.+ .+++++|+++.+++.++++....+. .+.+...+......
T Consensus 35 ~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~iD~s~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~- 109 (233)
T PRK05134 35 LRLNYIREHAGGLFGKRVLDVGCGGGILSESMARLG-ADVTGIDASEENIEVARLHALESGL---KIDYRQTTAEELAA- 109 (233)
T ss_pred HHHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcC-CeEEEEcCCHHHHHHHHHHHHHcCC---ceEEEecCHHHhhh-
Confidence 334444443 2357899999999999999888775 6899999999999999988766554 34555554433210
Q ss_pred cccccccchhccccccccCCCCCCCeeEEEecccccc---HHHHHHHHHHcccCCeEEEEecC
Q 047371 125 MNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP---LPQLADHIVSYAKPGAVVGISGI 184 (222)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~ 184 (222)
...++||+|++...+++ ...+++.+.+.|+|||.+++...
T Consensus 110 --------------------~~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 110 --------------------EHPGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred --------------------hcCCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEec
Confidence 03468999999776654 45688999999999999998754
No 144
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=99.22 E-value=1.6e-10 Score=98.69 Aligned_cols=104 Identities=23% Similarity=0.297 Sum_probs=86.0
Q ss_pred hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEec-CCcccccccccccccchh
Q 047371 56 IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLV-PDRTFTASMNERVDGVVE 134 (222)
Q Consensus 56 ~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~~~~ 134 (222)
+++|+.|||..||||.+++.+.-.| .+++|+|++..|+..|+.|+...++. ...+... |+..++.
T Consensus 195 v~~G~~vlDPFcGTGgiLiEagl~G-~~viG~Did~~mv~gak~Nl~~y~i~--~~~~~~~~Da~~lpl----------- 260 (347)
T COG1041 195 VKRGELVLDPFCGTGGILIEAGLMG-ARVIGSDIDERMVRGAKINLEYYGIE--DYPVLKVLDATNLPL----------- 260 (347)
T ss_pred cccCCEeecCcCCccHHHHhhhhcC-ceEeecchHHHHHhhhhhhhhhhCcC--ceeEEEecccccCCC-----------
Confidence 6789999999999999999988887 68999999999999999999988865 3333333 6655532
Q ss_pred ccccccccCCCCCCCeeEEEecccccc------------HHHHHHHHHHcccCCeEEEEecC
Q 047371 135 YLSSHEIRGISETEEYDVVIANILLNP------------LPQLADHIVSYAKPGAVVGISGI 184 (222)
Q Consensus 135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~------------~~~~l~~~~~~LkpgG~l~~~~~ 184 (222)
+.+++|.|+++||+.- +.++++.+++.||+||++++...
T Consensus 261 -----------~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 261 -----------RDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred -----------CCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 5557999999999753 55689999999999999998644
No 145
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.22 E-value=2.7e-10 Score=92.31 Aligned_cols=105 Identities=16% Similarity=0.241 Sum_probs=87.1
Q ss_pred cCCCcEEEEccCCCHHHHHHHHh-C-CCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEec-CCcccccccccccccch
Q 047371 57 KGGELFLDYGTGSGILGIAAIKF-G-AAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLV-PDRTFTASMNERVDGVV 133 (222)
Q Consensus 57 ~~~~~vLD~G~G~G~~~~~la~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~~~ 133 (222)
.++++|||+|++.|+.+++++.. + ..+++.+|.++++.+.|++++...++. +++..... +...... ..
T Consensus 58 ~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~-~~i~~~~~gdal~~l~-------~~- 128 (219)
T COG4122 58 SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVD-DRIELLLGGDALDVLS-------RL- 128 (219)
T ss_pred cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCc-ceEEEEecCcHHHHHH-------hc-
Confidence 37899999999999999998864 4 679999999999999999999999997 45777663 4432210 01
Q ss_pred hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEe
Q 047371 134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGIS 182 (222)
Q Consensus 134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 182 (222)
..++||+||.+..-..+.++++.+.++|+|||.+++.
T Consensus 129 ------------~~~~fDliFIDadK~~yp~~le~~~~lLr~GGliv~D 165 (219)
T COG4122 129 ------------LDGSFDLVFIDADKADYPEYLERALPLLRPGGLIVAD 165 (219)
T ss_pred ------------cCCCccEEEEeCChhhCHHHHHHHHHHhCCCcEEEEe
Confidence 4689999999887777899999999999999999994
No 146
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.21 E-value=1.3e-10 Score=92.19 Aligned_cols=109 Identities=13% Similarity=0.133 Sum_probs=83.2
Q ss_pred cEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCcee-EEecCCcccccccccccccchhccccc
Q 047371 61 LFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIK-LHLVPDRTFTASMNERVDGVVEYLSSH 139 (222)
Q Consensus 61 ~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (222)
.+|++|||+|..=...--.+..+|+++|.++.|-+.|.+.+..+.- .++. |+..+.++++ .+
T Consensus 79 ~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~--~~~~~fvva~ge~l~--------~l------- 141 (252)
T KOG4300|consen 79 DVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKP--LQVERFVVADGENLP--------QL------- 141 (252)
T ss_pred ceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccC--cceEEEEeechhcCc--------cc-------
Confidence 5899999999765544434668999999999999999888876532 3666 7888776653 11
Q ss_pred cccCCCCCCCeeEEEecccccc---HHHHHHHHHHcccCCeEEEEecCCCCcHHHH
Q 047371 140 EIRGISETEEYDVVIANILLNP---LPQLADHIVSYAKPGAVVGISGILSEQLPRI 192 (222)
Q Consensus 140 ~~~~~~~~~~~D~v~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~ 192 (222)
+++++|+|++...+.. ..+.++++.++|+|||++++.+....+-..+
T Consensus 142 ------~d~s~DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~ 191 (252)
T KOG4300|consen 142 ------ADGSYDTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFW 191 (252)
T ss_pred ------ccCCeeeEEEEEEEeccCCHHHHHHHHHHhcCCCcEEEEEecccccchHH
Confidence 6889999999877644 5678999999999999999976654443333
No 147
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=99.21 E-value=1.6e-10 Score=92.74 Aligned_cols=118 Identities=19% Similarity=0.272 Sum_probs=88.8
Q ss_pred CcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcccc
Q 047371 60 ELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSS 138 (222)
Q Consensus 60 ~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (222)
..+||+|||.|.+.+.+|.. +..+++|+|+....+..|...+...++. |+.+..+++..+.
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~--Nv~~~~~da~~~l---------------- 80 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLK--NVRFLRGDARELL---------------- 80 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTS--SEEEEES-CTTHH----------------
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhccc--ceEEEEccHHHHH----------------
Confidence 38999999999999988864 7789999999999999999999888876 9999999886641
Q ss_pred ccccCCCCCCCeeEEEecccccc-----------HHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHh
Q 047371 139 HEIRGISETEEYDVVIANILLNP-----------LPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSE 198 (222)
Q Consensus 139 ~~~~~~~~~~~~D~v~~~~~~~~-----------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~ 198 (222)
..+.+++++|.|..+.|-.+ ...+++.+.+.|+|||.+.+.+-...-.+...+.+..
T Consensus 81 ---~~~~~~~~v~~i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~~~~ 148 (195)
T PF02390_consen 81 ---RRLFPPGSVDRIYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYAEWMLEQFEE 148 (195)
T ss_dssp ---HHHSTTTSEEEEEEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHHHHH
T ss_pred ---hhcccCCchheEEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHh
Confidence 11225688999999876433 3568999999999999999976555555555555555
No 148
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.20 E-value=3.8e-10 Score=78.97 Aligned_cols=99 Identities=26% Similarity=0.390 Sum_probs=76.3
Q ss_pred cEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcccccc
Q 047371 61 LFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHE 140 (222)
Q Consensus 61 ~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (222)
+++|+|||+|.++..+++....+++++|.++..++.+++....... .++.+...+......
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~----------------- 61 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLA--DNVEVLKGDAEELPP----------------- 61 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccc--cceEEEEcChhhhcc-----------------
Confidence 4899999999999888875567999999999999999864333322 367777766544310
Q ss_pred ccCCCCCCCeeEEEecccccc----HHHHHHHHHHcccCCeEEEEe
Q 047371 141 IRGISETEEYDVVIANILLNP----LPQLADHIVSYAKPGAVVGIS 182 (222)
Q Consensus 141 ~~~~~~~~~~D~v~~~~~~~~----~~~~l~~~~~~LkpgG~l~~~ 182 (222)
...+++|+++++.++++ ...+++.+.+.++|+|.+++.
T Consensus 62 ----~~~~~~d~i~~~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 62 ----EADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred ----ccCCceEEEEEccceeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 03567999999998875 356789999999999999875
No 149
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.20 E-value=6.9e-10 Score=94.79 Aligned_cols=121 Identities=12% Similarity=0.034 Sum_probs=79.6
Q ss_pred hcCCCcEEEEccCCCHHHHHHHHhC--CCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccc-ccccccccccc
Q 047371 56 IKGGELFLDYGTGSGILGIAAIKFG--AAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTF-TASMNERVDGV 132 (222)
Q Consensus 56 ~~~~~~vLD~G~G~G~~~~~la~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~ 132 (222)
++++.+|||+|||+|..+..+++.. ..+|+++|+|+.+++.|++++.... ...++....+|.... .. ..
T Consensus 61 ~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~-p~~~v~~i~gD~~~~~~~-----~~-- 132 (301)
T TIGR03438 61 TGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADY-PQLEVHGICADFTQPLAL-----PP-- 132 (301)
T ss_pred hCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhC-CCceEEEEEEcccchhhh-----hc--
Confidence 4567899999999999999888753 4689999999999999998876432 112455666665432 11 00
Q ss_pred hhccccccccCCCCCCCeeEEEecccccc-----HHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHH
Q 047371 133 VEYLSSHEIRGISETEEYDVVIANILLNP-----LPQLADHIVSYAKPGAVVGISGILSEQLPRIINR 195 (222)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~D~v~~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~ 195 (222)
+. ..+...++++...+++ ...+++.+++.|+|||.+++.-........+...
T Consensus 133 ----------~~-~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d~~~~~~~~~~a 189 (301)
T TIGR03438 133 ----------EP-AAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVDLVKDPAVLEAA 189 (301)
T ss_pred ----------cc-ccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEeccCCCCHHHHHHh
Confidence 00 1123345554444443 3458999999999999999854444444444333
No 150
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.19 E-value=8.6e-10 Score=94.55 Aligned_cols=110 Identities=24% Similarity=0.207 Sum_probs=73.5
Q ss_pred HHHHHHHHhh-hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCC---CCceeEEecCCccc
Q 047371 46 KLCLLLLQSL-IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIG---PKKIKLHLVPDRTF 121 (222)
Q Consensus 46 ~~~~~~l~~~-~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~---~~~v~~~~~~~~~~ 121 (222)
+.+..++... ..++.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.|+++....... ..++.+...|...
T Consensus 131 ~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g-~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~- 208 (315)
T PLN02585 131 EKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEG-AIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLES- 208 (315)
T ss_pred HHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhh-
Confidence 3344444332 1257899999999999999999875 68999999999999999987654211 1245565554322
Q ss_pred ccccccccccchhccccccccCCCCCCCeeEEEeccccccHH-----HHHHHHHHcccCCeEEEEec
Q 047371 122 TASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLP-----QLADHIVSYAKPGAVVGISG 183 (222)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~-----~~l~~~~~~LkpgG~l~~~~ 183 (222)
..++||+|+|...++|+. .+++.+.+ +.++|. +++.
T Consensus 209 ------------------------l~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~l-iIs~ 249 (315)
T PLN02585 209 ------------------------LSGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRL-IISF 249 (315)
T ss_pred ------------------------cCCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEE-EEEe
Confidence 246799999987765542 24555554 455555 4443
No 151
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.19 E-value=4.5e-10 Score=91.75 Aligned_cols=106 Identities=24% Similarity=0.305 Sum_probs=76.5
Q ss_pred HHHHHHHhh-hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccccccc
Q 047371 47 LCLLLLQSL-IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASM 125 (222)
Q Consensus 47 ~~~~~l~~~-~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 125 (222)
.+..++... ..++.+|||+|||+|.++..+++.+ .+++|+|+++.+++.|+++....+.. .++.+...+...
T Consensus 51 ~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~-~~v~~~D~s~~~i~~a~~~~~~~~~~-~~i~~~~~d~~~----- 123 (230)
T PRK07580 51 TVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRG-AKVVASDISPQMVEEARERAPEAGLA-GNITFEVGDLES----- 123 (230)
T ss_pred HHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcCCc-cCcEEEEcCchh-----
Confidence 344444331 2467899999999999999998875 56999999999999999988776653 367777766321
Q ss_pred ccccccchhccccccccCCCCCCCeeEEEecccccc-----HHHHHHHHHHcccCCeEE
Q 047371 126 NERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP-----LPQLADHIVSYAKPGAVV 179 (222)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~-----~~~~l~~~~~~LkpgG~l 179 (222)
..++||+|++..++++ ...+++.+.+.+++++.+
T Consensus 124 --------------------~~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i 162 (230)
T PRK07580 124 --------------------LLGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSLIF 162 (230)
T ss_pred --------------------ccCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEE
Confidence 3567999999877644 234677777766544443
No 152
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=99.17 E-value=4.9e-10 Score=98.51 Aligned_cols=99 Identities=23% Similarity=0.296 Sum_probs=80.4
Q ss_pred CCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccc
Q 047371 59 GELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLS 137 (222)
Q Consensus 59 ~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (222)
+.+|||++||+|.+++.++.. +..+|+++|+++.+++.+++|+..+++. ++.+...|+..+..
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~--~~~v~~~Da~~~l~-------------- 121 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLE--NEKVFNKDANALLH-------------- 121 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC--ceEEEhhhHHHHHh--------------
Confidence 468999999999999998764 5568999999999999999999998875 56677766644310
Q ss_pred cccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEe
Q 047371 138 SHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGIS 182 (222)
Q Consensus 138 ~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 182 (222)
..++||+|+++|+ .....+++.+.+.+++||.++++
T Consensus 122 --------~~~~fD~V~lDP~-Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 122 --------EERKFDVVDIDPF-GSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred --------hcCCCCEEEECCC-CCcHHHHHHHHHHhcCCCEEEEE
Confidence 1356999999986 44567888888889999999996
No 153
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.17 E-value=1.7e-10 Score=92.29 Aligned_cols=95 Identities=18% Similarity=0.198 Sum_probs=66.3
Q ss_pred HHHhhhcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccc
Q 047371 51 LLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVD 130 (222)
Q Consensus 51 ~l~~~~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 130 (222)
.+...++++.+|||+|||+|.++..+++.....++|+|+++.+++.++.. ++.+...+..... .
T Consensus 6 ~i~~~i~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~---------~~~~~~~d~~~~l-------~ 69 (194)
T TIGR02081 6 SILNLIPPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR---------GVNVIQGDLDEGL-------E 69 (194)
T ss_pred HHHHhcCCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc---------CCeEEEEEhhhcc-------c
Confidence 34445667889999999999999888765556789999999999888642 2345555443210 0
Q ss_pred cchhccccccccCCCCCCCeeEEEeccccccHHH---HHHHHHHccc
Q 047371 131 GVVEYLSSHEIRGISETEEYDVVIANILLNPLPQ---LADHIVSYAK 174 (222)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~---~l~~~~~~Lk 174 (222)
+. ++++||+|+++.+++++.+ +++++.+.++
T Consensus 70 ~~-------------~~~sfD~Vi~~~~l~~~~d~~~~l~e~~r~~~ 103 (194)
T TIGR02081 70 AF-------------PDKSFDYVILSQTLQATRNPEEILDEMLRVGR 103 (194)
T ss_pred cc-------------CCCCcCEEEEhhHhHcCcCHHHHHHHHHHhCC
Confidence 01 4678999999998877544 5666665544
No 154
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=99.17 E-value=7.4e-10 Score=99.54 Aligned_cols=119 Identities=16% Similarity=0.189 Sum_probs=91.1
Q ss_pred hcCCCcEEEEccCCCHHHHHHHHh--CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371 56 IKGGELFLDYGTGSGILGIAAIKF--GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV 133 (222)
Q Consensus 56 ~~~~~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 133 (222)
.++|.+|||+|||+|.-+.+++.. +.+.++++|+++..++..++++.+.|+. ++.+...|...+.. .
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~--nv~v~~~D~~~~~~--------~- 179 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVS--NVALTHFDGRVFGA--------A- 179 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEeCchhhhhh--------h-
Confidence 468999999999999999988874 3468999999999999999999999986 67777776654310 0
Q ss_pred hccccccccCCCCCCCeeEEEecccccc-------------------------HHHHHHHHHHcccCCeEEEEecC--CC
Q 047371 134 EYLSSHEIRGISETEEYDVVIANILLNP-------------------------LPQLADHIVSYAKPGAVVGISGI--LS 186 (222)
Q Consensus 134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~-------------------------~~~~l~~~~~~LkpgG~l~~~~~--~~ 186 (222)
..+.||.|+.+.|+.. ..+++..+.++|||||+++.++. ..
T Consensus 180 ------------~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~ 247 (470)
T PRK11933 180 ------------LPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNR 247 (470)
T ss_pred ------------chhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCH
Confidence 2356999999988753 24579999999999999988744 33
Q ss_pred CcHHHHHHHHH
Q 047371 187 EQLPRIINRYS 197 (222)
Q Consensus 187 ~~~~~~~~~~~ 197 (222)
++.+++++.+.
T Consensus 248 eENE~vV~~~L 258 (470)
T PRK11933 248 EENQAVCLWLK 258 (470)
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 155
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=99.15 E-value=9.5e-10 Score=86.58 Aligned_cols=144 Identities=22% Similarity=0.272 Sum_probs=83.3
Q ss_pred ccccCCcchhHHHHHHHHhh--------hcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCC
Q 047371 36 AFGTGEHATTKLCLLLLQSL--------IKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNI 106 (222)
Q Consensus 36 ~f~~~~~~~~~~~~~~l~~~--------~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~ 106 (222)
..+.-..+....+..+|... ..++.+|||+|||+|..++.++.. +..+|+.+|.++ .++..+.|+..++.
T Consensus 15 ~~G~~vW~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~ 93 (173)
T PF10294_consen 15 GTGGKVWPAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGS 93 (173)
T ss_dssp --------HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--
T ss_pred CCcEEEechHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccc
Confidence 33444455666666666552 346889999999999999999988 678999999999 99999999988761
Q ss_pred -CCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc---HHHHHHHHHHcccCCeEEEEe
Q 047371 107 -GPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP---LPQLADHIVSYAKPGAVVGIS 182 (222)
Q Consensus 107 -~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~ 182 (222)
...++.+...+-.... . .. ....++||+|++...++. ...+++.+.++++++|.+++.
T Consensus 94 ~~~~~v~v~~L~Wg~~~-----~-~~------------~~~~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~ 155 (173)
T PF10294_consen 94 LLDGRVSVRPLDWGDEL-----D-SD------------LLEPHSFDVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLA 155 (173)
T ss_dssp ------EEEE--TTS-H-----H-HH------------HHS-SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEE
T ss_pred cccccccCcEEEecCcc-----c-cc------------ccccccCCEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 1235665555432210 0 00 013468999998766554 567899999999999997775
Q ss_pred c-CCCCcHHHHHHHHHh
Q 047371 183 G-ILSEQLPRIINRYSE 198 (222)
Q Consensus 183 ~-~~~~~~~~~~~~~~~ 198 (222)
. .......++.+.+++
T Consensus 156 ~~~R~~~~~~F~~~~~k 172 (173)
T PF10294_consen 156 YKRRRKSEQEFFDRLKK 172 (173)
T ss_dssp EE-S-TGGCHHHHHH--
T ss_pred eCEecHHHHHHHHHhhh
Confidence 3 344455556555543
No 156
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.15 E-value=9.8e-10 Score=89.60 Aligned_cols=119 Identities=13% Similarity=0.107 Sum_probs=81.2
Q ss_pred hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCC-------------CCceeEEecCCcccc
Q 047371 56 IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIG-------------PKKIKLHLVPDRTFT 122 (222)
Q Consensus 56 ~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~-------------~~~v~~~~~~~~~~~ 122 (222)
.+++.+|||+|||.|..+..|++.| .+|+|+|+|+.+++.+.. .+++. ..++++...|...+.
T Consensus 35 ~~~~~rvL~~gCG~G~da~~LA~~G-~~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~ 110 (218)
T PRK13255 35 LPAGSRVLVPLCGKSLDMLWLAEQG-HEVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITIYCGDFFALT 110 (218)
T ss_pred CCCCCeEEEeCCCChHhHHHHHhCC-CeEEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEEEECcccCCC
Confidence 3467899999999999999999987 589999999999998743 22221 135666666654432
Q ss_pred cccccccccchhccccccccCCCCCCCeeEEEecccccc-----HHHHHHHHHHcccCCeEEEEecC--C---------C
Q 047371 123 ASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP-----LPQLADHIVSYAKPGAVVGISGI--L---------S 186 (222)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~--~---------~ 186 (222)
. .....||.|+....+++ ...+++.+.++|||||.+++.+. . .
T Consensus 111 ~---------------------~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~~gPp~~ 169 (218)
T PRK13255 111 A---------------------ADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEELAGPPFS 169 (218)
T ss_pred c---------------------ccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccCCCCCCC
Confidence 1 02357899996544433 35689999999999986444111 1 2
Q ss_pred CcHHHHHHHHHhh
Q 047371 187 EQLPRIINRYSEF 199 (222)
Q Consensus 187 ~~~~~~~~~~~~~ 199 (222)
-+..++.+.+...
T Consensus 170 ~~~~el~~~~~~~ 182 (218)
T PRK13255 170 VSDEEVEALYAGC 182 (218)
T ss_pred CCHHHHHHHhcCC
Confidence 3456777777653
No 157
>PRK03612 spermidine synthase; Provisional
Probab=99.15 E-value=1.1e-09 Score=100.00 Aligned_cols=142 Identities=15% Similarity=0.196 Sum_probs=95.8
Q ss_pred hcCCCcEEEEccCCCHHHHHHHHhCC-CEEEEEeCChHHHHHHHHHHHh-----cCCCCCceeEEecCCccccccccccc
Q 047371 56 IKGGELFLDYGTGSGILGIAAIKFGA-AMFVGVDIDPQVIKSAHQNAAL-----NNIGPKKIKLHLVPDRTFTASMNERV 129 (222)
Q Consensus 56 ~~~~~~vLD~G~G~G~~~~~la~~~~-~~v~gvD~s~~~l~~a~~~~~~-----~~~~~~~v~~~~~~~~~~~~~~~~~~ 129 (222)
.+++++|||+|||+|..+..+++.+. .+++++|+++.+++.++++... ..++.+++++...|...+..
T Consensus 295 ~~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~------ 368 (521)
T PRK03612 295 SARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLR------ 368 (521)
T ss_pred CCCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHH------
Confidence 35678999999999999998888765 7999999999999999984321 12333578888887754311
Q ss_pred ccchhccccccccCCCCCCCeeEEEecccccc--------HHHHHHHHHHcccCCeEEEEecC----CCCcHHHHHHHHH
Q 047371 130 DGVVEYLSSHEIRGISETEEYDVVIANILLNP--------LPQLADHIVSYAKPGAVVGISGI----LSEQLPRIINRYS 197 (222)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~--------~~~~l~~~~~~LkpgG~l~~~~~----~~~~~~~~~~~~~ 197 (222)
. ..++||+|+++.+... ..++++.+.+.|||||.+++... ..+...++.+.++
T Consensus 369 -------------~--~~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~ 433 (521)
T PRK03612 369 -------------K--LAEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLE 433 (521)
T ss_pred -------------h--CCCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHH
Confidence 0 2468999999875422 23588999999999999998422 1223344555555
Q ss_pred hh-hhcc----eecccCCceEeeccc
Q 047371 198 EF-LEDI----LVSEKDDWRCVSGTK 218 (222)
Q Consensus 198 ~~-~~~~----~~~~~~~w~~~~~~k 218 (222)
+. |... .+..-+.|.-+.+.|
T Consensus 434 ~~gf~v~~~~~~vps~g~w~f~~as~ 459 (521)
T PRK03612 434 AAGLATTPYHVNVPSFGEWGFVLAGA 459 (521)
T ss_pred HcCCEEEEEEeCCCCcchhHHHeeeC
Confidence 54 4110 112236776555544
No 158
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=99.15 E-value=8.7e-10 Score=92.16 Aligned_cols=109 Identities=12% Similarity=0.188 Sum_probs=77.8
Q ss_pred CCcccccCCcchhHHHHHHHHhh-hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCce
Q 047371 33 PGLAFGTGEHATTKLCLLLLQSL-IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKI 111 (222)
Q Consensus 33 ~~~~f~~~~~~~~~~~~~~l~~~-~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v 111 (222)
|...+|+..-.....+..++... ..++++|||+|||+|.++..+++.+ .+++|+|+++.+++.+++++.. . .++
T Consensus 3 ~~k~~GQnfl~d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~-~~v~~vEid~~~~~~l~~~~~~--~--~~v 77 (258)
T PRK14896 3 MNKKLGQHFLIDDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRA-KKVYAIELDPRLAEFLRDDEIA--A--GNV 77 (258)
T ss_pred CCCcCCccccCCHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhC-CEEEEEECCHHHHHHHHHHhcc--C--CCE
Confidence 44455554433344444444333 4578899999999999999999884 6899999999999999987643 2 378
Q ss_pred eEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEeccccccHHHHHHHHH
Q 047371 112 KLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIV 170 (222)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~ 170 (222)
++...|+..+ +...+|.|++|+|++....++..+.
T Consensus 78 ~ii~~D~~~~------------------------~~~~~d~Vv~NlPy~i~s~~~~~l~ 112 (258)
T PRK14896 78 EIIEGDALKV------------------------DLPEFNKVVSNLPYQISSPITFKLL 112 (258)
T ss_pred EEEEeccccC------------------------CchhceEEEEcCCcccCcHHHHHHH
Confidence 8888887654 2335899999999986544444443
No 159
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=99.14 E-value=4.8e-10 Score=96.68 Aligned_cols=109 Identities=20% Similarity=0.143 Sum_probs=72.1
Q ss_pred CCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcC--CCC------CceeEEecCCccccccccccc
Q 047371 58 GGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNN--IGP------KKIKLHLVPDRTFTASMNERV 129 (222)
Q Consensus 58 ~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~~------~~v~~~~~~~~~~~~~~~~~~ 129 (222)
++.+|||+|||-|.-+..+...+..+++|+|++...++.|+++..... ... -...+...|...-
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~-------- 133 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSE-------- 133 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCS--------
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccc--------
Confidence 788999999999887776667778899999999999999999883211 000 0122333332111
Q ss_pred ccchhccccccccCCCC--CCCeeEEEecccccc-------HHHHHHHHHHcccCCeEEEEecC
Q 047371 130 DGVVEYLSSHEIRGISE--TEEYDVVIANILLNP-------LPQLADHIVSYAKPGAVVGISGI 184 (222)
Q Consensus 130 ~~~~~~~~~~~~~~~~~--~~~~D~v~~~~~~~~-------~~~~l~~~~~~LkpgG~l~~~~~ 184 (222)
.+....+ ..+||+|-|...+|. ...++.++.+.|+|||+++.+++
T Consensus 134 ----------~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~ 187 (331)
T PF03291_consen 134 ----------SLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTP 187 (331)
T ss_dssp ----------HHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ----------hhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 1111112 358999999998886 35689999999999999998754
No 160
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=99.13 E-value=7e-10 Score=97.11 Aligned_cols=128 Identities=16% Similarity=0.245 Sum_probs=98.9
Q ss_pred eEEeCCCcccccCCcchhHHHHHHHHhhhcC--CCcEEEEccCCCHHHHHHHHh--CCCEEEEEeCChHHHHHHHHHHHh
Q 047371 28 NIILNPGLAFGTGEHATTKLCLLLLQSLIKG--GELFLDYGTGSGILGIAAIKF--GAAMFVGVDIDPQVIKSAHQNAAL 103 (222)
Q Consensus 28 ~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~--~~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~s~~~l~~a~~~~~~ 103 (222)
..+.||.+.| ++..+-++...+....++ +.+|||+.||+|..++.++.. +..+|+++|+++.+++.+++|+..
T Consensus 15 ~vFYNP~~~~---nRDlsv~~~~~~~~~~~~~~~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~ 91 (374)
T TIGR00308 15 TVFYNPRMQF---NRDLSVTCIQAFDNLYGKECYINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEY 91 (374)
T ss_pred CcccCchhhc---cccHHHHHHHHHHHhhCCcCCCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 4688888887 555555555544433222 258999999999999998876 568999999999999999999998
Q ss_pred cCCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEe
Q 047371 104 NNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGIS 182 (222)
Q Consensus 104 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 182 (222)
+++. ++.+...|+..+.. . ...+||+|..+| +.....+++.+.+.++++|.++++
T Consensus 92 N~~~--~~~v~~~Da~~~l~-------------------~--~~~~fDvIdlDP-fGs~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 92 NSVE--NIEVPNEDAANVLR-------------------Y--RNRKFHVIDIDP-FGTPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred hCCC--cEEEEchhHHHHHH-------------------H--hCCCCCEEEeCC-CCCcHHHHHHHHHhcccCCEEEEE
Confidence 8875 67777776654421 0 235799999998 665568999999999999999995
No 161
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.12 E-value=1.6e-10 Score=93.60 Aligned_cols=98 Identities=17% Similarity=0.260 Sum_probs=69.9
Q ss_pred CcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccccc
Q 047371 60 ELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSH 139 (222)
Q Consensus 60 ~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (222)
..++|+|||+|..++.++.+ +.+|+|+|+|++||+.|++... ++....... +.+ ++.++.
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~--------~~y~~t~~~-----ms~--~~~v~L---- 94 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPP--------VTYCHTPST-----MSS--DEMVDL---- 94 (261)
T ss_pred ceEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhcCCC--------cccccCCcc-----ccc--cccccc----
Confidence 38999999999888888887 5799999999999999987543 222221110 000 011111
Q ss_pred cccCCCCCCCeeEEEecccccc--HHHHHHHHHHcccCCeEEEE
Q 047371 140 EIRGISETEEYDVVIANILLNP--LPQLADHIVSYAKPGAVVGI 181 (222)
Q Consensus 140 ~~~~~~~~~~~D~v~~~~~~~~--~~~~l~~~~~~LkpgG~l~~ 181 (222)
...++++|+|++...+|+ +..+.+.+.|.||+.|-++.
T Consensus 95 ----~g~e~SVDlI~~Aqa~HWFdle~fy~~~~rvLRk~Gg~ia 134 (261)
T KOG3010|consen 95 ----LGGEESVDLITAAQAVHWFDLERFYKEAYRVLRKDGGLIA 134 (261)
T ss_pred ----cCCCcceeeehhhhhHHhhchHHHHHHHHHHcCCCCCEEE
Confidence 115789999999998887 67899999999999984443
No 162
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=99.12 E-value=8.4e-10 Score=93.81 Aligned_cols=114 Identities=17% Similarity=0.244 Sum_probs=83.9
Q ss_pred eCCCcccccCCcchhHHHHHHHHhh-hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCC
Q 047371 31 LNPGLAFGTGEHATTKLCLLLLQSL-IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPK 109 (222)
Q Consensus 31 ~~~~~~f~~~~~~~~~~~~~~l~~~-~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~ 109 (222)
+.|...+|+..-.....+..++... +.++++|||+|||+|.++..+++.. .+++|+|+++.+++.+++++...+.. .
T Consensus 8 ~~~kk~~GQnFL~d~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~-~~V~avEiD~~li~~l~~~~~~~~~~-~ 85 (294)
T PTZ00338 8 MVFNKKFGQHILKNPLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLA-KKVIAIEIDPRMVAELKKRFQNSPLA-S 85 (294)
T ss_pred cCcCCCCCccccCCHHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhC-CcEEEEECCHHHHHHHHHHHHhcCCC-C
Confidence 3455666665444444444444433 4578899999999999999988874 68999999999999999988765543 4
Q ss_pred ceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEeccccccHHHHHHHHH
Q 047371 110 KIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIV 170 (222)
Q Consensus 110 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~ 170 (222)
++++...|+... ....||+|++|+|++....++-.+.
T Consensus 86 ~v~ii~~Dal~~------------------------~~~~~d~VvaNlPY~Istpil~~ll 122 (294)
T PTZ00338 86 KLEVIEGDALKT------------------------EFPYFDVCVANVPYQISSPLVFKLL 122 (294)
T ss_pred cEEEEECCHhhh------------------------cccccCEEEecCCcccCcHHHHHHH
Confidence 788988887554 2346899999999987655544444
No 163
>PRK01581 speE spermidine synthase; Validated
Probab=99.11 E-value=2.2e-09 Score=92.84 Aligned_cols=134 Identities=17% Similarity=0.239 Sum_probs=90.6
Q ss_pred eEEeCCCcccccCC-cchhHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHhC-CCEEEEEeCChHHHHHHHHHH----
Q 047371 28 NIILNPGLAFGTGE-HATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFG-AAMFVGVDIDPQVIKSAHQNA---- 101 (222)
Q Consensus 28 ~~~~~~~~~f~~~~-~~~~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~---- 101 (222)
.+.++-...+...- +.+...+..........+.+||++|||.|..+..+.+.+ ..+|+++|+++.+++.|+...
T Consensus 119 ~L~LDG~~Q~se~DE~iYHE~Lvhp~m~~h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~ 198 (374)
T PRK01581 119 RLYLDKQLQFSSVDEQIYHEALVHPIMSKVIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVS 198 (374)
T ss_pred EEEECCeeccccccHHHHHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccch
Confidence 35555555553322 223333333222234567899999999999888888764 579999999999999999621
Q ss_pred -HhcCCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEeccccc--c------HHHHHHHHHHc
Q 047371 102 -ALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLN--P------LPQLADHIVSY 172 (222)
Q Consensus 102 -~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~--~------~~~~l~~~~~~ 172 (222)
....+...++++...|+..+.. ...++||+|+++.+-. . ..++++.+.+.
T Consensus 199 ~~~~~~~DpRV~vvi~Da~~fL~---------------------~~~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~ 257 (374)
T PRK01581 199 LNKSAFFDNRVNVHVCDAKEFLS---------------------SPSSLYDVIIIDFPDPATELLSTLYTSELFARIATF 257 (374)
T ss_pred hccccCCCCceEEEECcHHHHHH---------------------hcCCCccEEEEcCCCccccchhhhhHHHHHHHHHHh
Confidence 1123334688888888765421 0346799999985421 1 25689999999
Q ss_pred ccCCeEEEEe
Q 047371 173 AKPGAVVGIS 182 (222)
Q Consensus 173 LkpgG~l~~~ 182 (222)
|+|||++++.
T Consensus 258 LkPgGV~V~Q 267 (374)
T PRK01581 258 LTEDGAFVCQ 267 (374)
T ss_pred cCCCcEEEEe
Confidence 9999998875
No 164
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=99.09 E-value=2e-09 Score=90.62 Aligned_cols=113 Identities=16% Similarity=0.138 Sum_probs=79.6
Q ss_pred CCCcccccCCcchhHHHHHHHHhh-hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCc
Q 047371 32 NPGLAFGTGEHATTKLCLLLLQSL-IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKK 110 (222)
Q Consensus 32 ~~~~~f~~~~~~~~~~~~~~l~~~-~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~ 110 (222)
.|...+++........+..+++.. ..++.+|||+|||+|.++..+++.+ .+++|+|+++.+++.++++... .+
T Consensus 15 ~~~k~~gq~fl~~~~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~-~~v~avE~d~~~~~~~~~~~~~-----~~ 88 (272)
T PRK00274 15 RAKKSLGQNFLIDENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERA-AKVTAVEIDRDLAPILAETFAE-----DN 88 (272)
T ss_pred CCCcccCcCcCCCHHHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhC-CcEEEEECCHHHHHHHHHhhcc-----Cc
Confidence 455556553333333334444333 4578899999999999999999885 4899999999999999886532 37
Q ss_pred eeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHc
Q 047371 111 IKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSY 172 (222)
Q Consensus 111 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~ 172 (222)
+.+...|+..+.. +.-..+.|++|+|++....++..+...
T Consensus 89 v~~i~~D~~~~~~----------------------~~~~~~~vv~NlPY~iss~ii~~~l~~ 128 (272)
T PRK00274 89 LTIIEGDALKVDL----------------------SELQPLKVVANLPYNITTPLLFHLLEE 128 (272)
T ss_pred eEEEEChhhcCCH----------------------HHcCcceEEEeCCccchHHHHHHHHhc
Confidence 8888888765521 111158999999998777776666544
No 165
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=1e-09 Score=97.36 Aligned_cols=155 Identities=19% Similarity=0.285 Sum_probs=113.5
Q ss_pred CcceeEEeCCCcccccCCcchhHHHHHHHHhh--hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHH
Q 047371 24 VQATNIILNPGLAFGTGEHATTKLCLLLLQSL--IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNA 101 (222)
Q Consensus 24 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~--~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~ 101 (222)
+....|+++|+..|.++.+ ....+...+... ++.++.++|++||+|.+++.+++. ..+|+|+|+++.++..|+.|+
T Consensus 348 l~~ltF~iSp~AFFQ~Nt~-~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~-~~~ViGvEi~~~aV~dA~~nA 425 (534)
T KOG2187|consen 348 LLGLTFRISPGAFFQTNTS-AAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARG-VKRVIGVEISPDAVEDAEKNA 425 (534)
T ss_pred cCCeEEEECCchhhccCcH-HHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcc-ccceeeeecChhhcchhhhcc
Confidence 3457899999999965444 444455555544 567789999999999999998866 578999999999999999999
Q ss_pred HhcCCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCee-EEEeccccccHHH-HHHHHHHcccCCeEE
Q 047371 102 ALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYD-VVIANILLNPLPQ-LADHIVSYAKPGAVV 179 (222)
Q Consensus 102 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D-~v~~~~~~~~~~~-~l~~~~~~LkpgG~l 179 (222)
..++++ |.+|..+.++....+ + +.+ .-..=+ +++.+++.-.+.. +++.+.+.-.+--.+
T Consensus 426 ~~Ngis--Na~Fi~gqaE~~~~s----l-----------~~~--~~~~~~~v~iiDPpR~Glh~~~ik~l~~~~~~~rlv 486 (534)
T KOG2187|consen 426 QINGIS--NATFIVGQAEDLFPS----L-----------LTP--CCDSETLVAIIDPPRKGLHMKVIKALRAYKNPRRLV 486 (534)
T ss_pred hhcCcc--ceeeeecchhhccch----h-----------ccc--CCCCCceEEEECCCcccccHHHHHHHHhccCccceE
Confidence 999997 899999876554211 0 011 111234 6677887766554 566666666699899
Q ss_pred EEecCCCCcHHHHHHHHHhh
Q 047371 180 GISGILSEQLPRIINRYSEF 199 (222)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~ 199 (222)
|++|......+.+.+.+...
T Consensus 487 yvSCn~~t~ar~v~~lc~~~ 506 (534)
T KOG2187|consen 487 YVSCNPHTAARNVIDLCSSP 506 (534)
T ss_pred EEEcCHHHhhhhHHHhhcCc
Confidence 99988876677777666554
No 166
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=5.5e-09 Score=91.11 Aligned_cols=143 Identities=17% Similarity=0.180 Sum_probs=101.5
Q ss_pred ccccCCcchhHHHHHHHHhh--hcCCCcEEEEccCCCHHHHHHHHhC---CCEEEEEeCChHHHHHHHHHHHhcCCCCCc
Q 047371 36 AFGTGEHATTKLCLLLLQSL--IKGGELFLDYGTGSGILGIAAIKFG---AAMFVGVDIDPQVIKSAHQNAALNNIGPKK 110 (222)
Q Consensus 36 ~f~~~~~~~~~~~~~~l~~~--~~~~~~vLD~G~G~G~~~~~la~~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~ 110 (222)
.|..|....+.....+.... .++|.+|||++++.|.-+.++++.- ...|+++|.++..++..+.++.+.|+. +
T Consensus 132 ~~~~G~~~vQd~sS~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~--n 209 (355)
T COG0144 132 EFAEGLIYVQDEASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVR--N 209 (355)
T ss_pred hhhceEEEEcCHHHHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCC--c
Confidence 45555555555555544433 4679999999999999999888752 245799999999999999999999986 6
Q ss_pred eeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc-------------------------HHHH
Q 047371 111 IKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP-------------------------LPQL 165 (222)
Q Consensus 111 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~-------------------------~~~~ 165 (222)
+.....|...+.. .+...++||.|+.++|+.. ..++
T Consensus 210 v~~~~~d~~~~~~-------------------~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~i 270 (355)
T COG0144 210 VIVVNKDARRLAE-------------------LLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEI 270 (355)
T ss_pred eEEEecccccccc-------------------cccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHH
Confidence 6666666543310 0112336999999998753 2357
Q ss_pred HHHHHHcccCCeEEEEecC--C-CCcHHHHHHHHHhh
Q 047371 166 ADHIVSYAKPGAVVGISGI--L-SEQLPRIINRYSEF 199 (222)
Q Consensus 166 l~~~~~~LkpgG~l~~~~~--~-~~~~~~~~~~~~~~ 199 (222)
+..+.+.|||||.+++++. . .++...+...+++.
T Consensus 271 L~~a~~~lk~GG~LVYSTCS~~~eENE~vV~~~L~~~ 307 (355)
T COG0144 271 LAAALKLLKPGGVLVYSTCSLTPEENEEVVERFLERH 307 (355)
T ss_pred HHHHHHhcCCCCEEEEEccCCchhcCHHHHHHHHHhC
Confidence 9999999999999998643 2 34444444555554
No 167
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=99.07 E-value=1.8e-09 Score=89.39 Aligned_cols=109 Identities=14% Similarity=0.173 Sum_probs=87.7
Q ss_pred CCCcEEEEccCCCHHHHHHHHh--CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371 58 GGELFLDYGTGSGILGIAAIKF--GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY 135 (222)
Q Consensus 58 ~~~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 135 (222)
+.++|||+|++.|..++.+++. +.++++++|.++...+.|++++...|+. +++++..+++......+.+
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~-~~I~~~~G~a~e~L~~l~~-------- 149 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVA-HKIDFREGPALPVLDQMIE-------- 149 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCC-CceEEEeccHHHHHHHHHh--------
Confidence 5789999999999999988864 3579999999999999999999999987 6899998887543210000
Q ss_pred cccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEe
Q 047371 136 LSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGIS 182 (222)
Q Consensus 136 ~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 182 (222)
.-...++||+|+.+.--..+..+++.+.++|+|||.+++.
T Consensus 150 -------~~~~~~~fD~iFiDadK~~Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 150 -------DGKYHGTFDFIFVDADKDNYINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred -------ccccCCcccEEEecCCHHHhHHHHHHHHHhcCCCeEEEEc
Confidence 0001368999999887777888999999999999999984
No 168
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=99.07 E-value=3.1e-09 Score=88.53 Aligned_cols=110 Identities=15% Similarity=0.265 Sum_probs=79.7
Q ss_pred CCcccccCCcchhHHHHHHHHhh-hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCce
Q 047371 33 PGLAFGTGEHATTKLCLLLLQSL-IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKI 111 (222)
Q Consensus 33 ~~~~f~~~~~~~~~~~~~~l~~~-~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v 111 (222)
|...+|+..-.....+..++... ..++.+|||+|||+|.++..+++.. .+++++|+++.+++.++.+... ..++
T Consensus 3 ~~k~~gq~fl~d~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~-~~v~~iE~d~~~~~~l~~~~~~----~~~v 77 (253)
T TIGR00755 3 PRKSLGQNFLIDESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRA-KKVTAIEIDPRLAEILRKLLSL----YERL 77 (253)
T ss_pred CCCCCCCccCCCHHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhC-CcEEEEECCHHHHHHHHHHhCc----CCcE
Confidence 44555554444444444555443 4567899999999999999999875 5799999999999999877643 1378
Q ss_pred eEEecCCcccccccccccccchhccccccccCCCCCCCee---EEEeccccccHHHHHHHHHH
Q 047371 112 KLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYD---VVIANILLNPLPQLADHIVS 171 (222)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D---~v~~~~~~~~~~~~l~~~~~ 171 (222)
++...|+..+. ...+| +|++|+|++....++.++..
T Consensus 78 ~v~~~D~~~~~------------------------~~~~d~~~~vvsNlPy~i~~~il~~ll~ 116 (253)
T TIGR00755 78 EVIEGDALKVD------------------------LPDFPKQLKVVSNLPYNISSPLIFKLLE 116 (253)
T ss_pred EEEECchhcCC------------------------hhHcCCcceEEEcCChhhHHHHHHHHhc
Confidence 88888876542 12345 99999999877777777765
No 169
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=99.07 E-value=5.4e-09 Score=89.65 Aligned_cols=85 Identities=27% Similarity=0.373 Sum_probs=62.3
Q ss_pred CCCcEEEEccCCCHHHHHHHH-hCCCEEEEEeCChHHHHHHHHHHHhc-CCCCCceeEEec-CCcccccccccccccchh
Q 047371 58 GGELFLDYGTGSGILGIAAIK-FGAAMFVGVDIDPQVIKSAHQNAALN-NIGPKKIKLHLV-PDRTFTASMNERVDGVVE 134 (222)
Q Consensus 58 ~~~~vLD~G~G~G~~~~~la~-~~~~~v~gvD~s~~~l~~a~~~~~~~-~~~~~~v~~~~~-~~~~~~~~~~~~~~~~~~ 134 (222)
++.++||+|||+|.+...++. .+..+++|+|+++.+++.|++++..+ ++. .++.+... +..... .++
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~-~~I~~~~~~~~~~i~-------~~i-- 183 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLN-GAIRLRLQKDSKAIF-------KGI-- 183 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCc-CcEEEEEccchhhhh-------hcc--
Confidence 357899999999987776664 45579999999999999999999988 676 46766532 221110 000
Q ss_pred ccccccccCCCCCCCeeEEEecccccc
Q 047371 135 YLSSHEIRGISETEEYDVVIANILLNP 161 (222)
Q Consensus 135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~ 161 (222)
..+.++||+|+||||++.
T Consensus 184 ---------~~~~~~fDlivcNPPf~~ 201 (321)
T PRK11727 184 ---------IHKNERFDATLCNPPFHA 201 (321)
T ss_pred ---------cccCCceEEEEeCCCCcC
Confidence 014568999999999975
No 170
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=99.06 E-value=7.3e-10 Score=93.20 Aligned_cols=128 Identities=21% Similarity=0.197 Sum_probs=86.8
Q ss_pred HHhhhcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCC----ceeEEecCCccccccccc
Q 047371 52 LQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPK----KIKLHLVPDRTFTASMNE 127 (222)
Q Consensus 52 l~~~~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~----~v~~~~~~~~~~~~~~~~ 127 (222)
+..+.++++.++|+|||-|.-++.+-+.+...++|+|++...+++|+++.+...-..+ .+.|..+|...-
T Consensus 111 I~~y~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~------ 184 (389)
T KOG1975|consen 111 INLYTKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKE------ 184 (389)
T ss_pred HHHHhccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchh------
Confidence 3444678999999999999988887778888999999999999999998864221111 234544443211
Q ss_pred ccccchhccccccccCCCCCCCeeEEEecccccc-------HHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHh
Q 047371 128 RVDGVVEYLSSHEIRGISETEEYDVVIANILLNP-------LPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSE 198 (222)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~-------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~ 198 (222)
.+..+++ .++.+||+|-|...+|. ...++.++.++|||||+++-+ ++. ...|...+..
T Consensus 185 ~l~d~~e----------~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgT-iPd--sd~Ii~rlr~ 249 (389)
T KOG1975|consen 185 RLMDLLE----------FKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGT-IPD--SDVIIKRLRA 249 (389)
T ss_pred HHHHhcc----------CCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEe-cCc--HHHHHHHHHh
Confidence 1111111 03444999999888775 344799999999999999875 232 2344444444
No 171
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.04 E-value=1.2e-09 Score=91.38 Aligned_cols=150 Identities=15% Similarity=0.199 Sum_probs=98.4
Q ss_pred EEeCCCcccccCCcchhHHHHHHHHhhh---c-CCCcEEEEccCCCH----HHHHHHHhC------CCEEEEEeCChHHH
Q 047371 29 IILNPGLAFGTGEHATTKLCLLLLQSLI---K-GGELFLDYGTGSGI----LGIAAIKFG------AAMFVGVDIDPQVI 94 (222)
Q Consensus 29 ~~~~~~~~f~~~~~~~~~~~~~~l~~~~---~-~~~~vLD~G~G~G~----~~~~la~~~------~~~v~gvD~s~~~l 94 (222)
+.+|.+..|.-.+ ....+...++..++ + ..-+||.+||++|. +++.+.+.. .-+|+|+|+|..++
T Consensus 64 ltin~T~FFR~~~-~f~~l~~~v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L 142 (268)
T COG1352 64 LTINVTEFFRDPE-HFEELRDEVLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVL 142 (268)
T ss_pred hhhccchhccCcH-HHHHHHHHHHHHHHhhccCCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHH
Confidence 3455566664322 23333333333222 2 25689999999993 444454432 36899999999999
Q ss_pred HHHHHHHHh-----cCCCCCcee--EEecCCcccccccccccccchhccccccccCCCCCCCeeEEEeccc-ccc----H
Q 047371 95 KSAHQNAAL-----NNIGPKKIK--LHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANIL-LNP----L 162 (222)
Q Consensus 95 ~~a~~~~~~-----~~~~~~~v~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~-~~~----~ 162 (222)
+.|+..... .+++..... |...... .+.+.+.+..+|.++-.|.+.+....+.||+|+|..+ ++. .
T Consensus 143 ~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~--~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q 220 (268)
T COG1352 143 EKARAGIYPSRELLRGLPPELLRRYFERGGDG--SYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQ 220 (268)
T ss_pred HHHhcCCCChhHhhccCCHHHHhhhEeecCCC--cEEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHH
Confidence 999876543 333322222 2222222 3356677888999999999987656778999999444 433 4
Q ss_pred HHHHHHHHHcccCCeEEEE
Q 047371 163 PQLADHIVSYAKPGAVVGI 181 (222)
Q Consensus 163 ~~~l~~~~~~LkpgG~l~~ 181 (222)
.++++.++..|+|||++++
T Consensus 221 ~~il~~f~~~L~~gG~Lfl 239 (268)
T COG1352 221 ERILRRFADSLKPGGLLFL 239 (268)
T ss_pred HHHHHHHHHHhCCCCEEEE
Confidence 5689999999999999999
No 172
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=99.03 E-value=1.5e-09 Score=92.49 Aligned_cols=100 Identities=20% Similarity=0.203 Sum_probs=80.0
Q ss_pred CCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccc
Q 047371 58 GGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLS 137 (222)
Q Consensus 58 ~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (222)
.++.|||+|||+|.+++..|+.|+.+|+|+|-|.- ++.|.+.+..|++. +.+++..+..+....
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~i-a~~a~~iv~~N~~~-~ii~vi~gkvEdi~L-------------- 123 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSI-ADFARKIVKDNGLE-DVITVIKGKVEDIEL-------------- 123 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhCcceEEEEechHH-HHHHHHHHHhcCcc-ceEEEeecceEEEec--------------
Confidence 58899999999999999999999999999999874 49999999999987 467887777665532
Q ss_pred cccccCCCCCCCeeEEEecccccc------HHHHHHHHHHcccCCeEEEE
Q 047371 138 SHEIRGISETEEYDVVIANILLNP------LPQLADHIVSYAKPGAVVGI 181 (222)
Q Consensus 138 ~~~~~~~~~~~~~D~v~~~~~~~~------~~~~l~~~~~~LkpgG~l~~ 181 (222)
|.+++|+|++--+-+. +..++-.--+.|+|||.++=
T Consensus 124 --------P~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P 165 (346)
T KOG1499|consen 124 --------PVEKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIYP 165 (346)
T ss_pred --------CccceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEcc
Confidence 6688999998654332 22345666789999998874
No 173
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.02 E-value=4.1e-09 Score=84.45 Aligned_cols=108 Identities=25% Similarity=0.310 Sum_probs=77.0
Q ss_pred CCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCC-cccccccccccccchhccc
Q 047371 59 GELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPD-RTFTASMNERVDGVVEYLS 137 (222)
Q Consensus 59 ~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~ 137 (222)
..-|||+|||+|..+..+...+ -..+|+|+|+.|++.|.+.-.. + .+..+|. +.+++
T Consensus 51 ~~~iLDIGCGsGLSg~vL~~~G-h~wiGvDiSpsML~~a~~~e~e-g------dlil~DMG~Glpf-------------- 108 (270)
T KOG1541|consen 51 SGLILDIGCGSGLSGSVLSDSG-HQWIGVDISPSMLEQAVERELE-G------DLILCDMGEGLPF-------------- 108 (270)
T ss_pred CcEEEEeccCCCcchheeccCC-ceEEeecCCHHHHHHHHHhhhh-c------CeeeeecCCCCCC--------------
Confidence 5679999999999999887776 5899999999999999874322 1 1333333 22222
Q ss_pred cccccCCCCCCCeeEEEecccccc--------------HHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHH
Q 047371 138 SHEIRGISETEEYDVVIANILLNP--------------LPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYS 197 (222)
Q Consensus 138 ~~~~~~~~~~~~~D~v~~~~~~~~--------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~ 197 (222)
+.+.||-+|+...+.+ +..++..++.+|++|+..++. +..++..++...++
T Consensus 109 --------rpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Q-fYpen~~q~d~i~~ 173 (270)
T KOG1541|consen 109 --------RPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQ-FYPENEAQIDMIMQ 173 (270)
T ss_pred --------CCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEE-ecccchHHHHHHHH
Confidence 6889999998766544 234788999999999998885 44444444444333
No 174
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=99.02 E-value=2.4e-09 Score=91.65 Aligned_cols=140 Identities=26% Similarity=0.362 Sum_probs=88.9
Q ss_pred CCcchhHHHHHHHHhhh--cCCCcEEEEccCCCHHHHHHHH--------hCCCEEEEEeCChHHHHHHHHHHHhcCCCCC
Q 047371 40 GEHATTKLCLLLLQSLI--KGGELFLDYGTGSGILGIAAIK--------FGAAMFVGVDIDPQVIKSAHQNAALNNIGPK 109 (222)
Q Consensus 40 ~~~~~~~~~~~~l~~~~--~~~~~vLD~G~G~G~~~~~la~--------~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~ 109 (222)
|.+.|+..+.+++...+ .++.+|+|.+||+|.+...+.+ ....+++|+|+++.++..|+.++...+....
T Consensus 26 G~~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~ 105 (311)
T PF02384_consen 26 GQFYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNS 105 (311)
T ss_dssp GGC---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCB
T ss_pred ceeehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccc
Confidence 45667777777776664 3566899999999999887765 2567899999999999999998877766543
Q ss_pred ceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEeccccccH------------------------HHH
Q 047371 110 KIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPL------------------------PQL 165 (222)
Q Consensus 110 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~------------------------~~~ 165 (222)
...+...+...... ......||+|++|||+... ..+
T Consensus 106 ~~~i~~~d~l~~~~--------------------~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F 165 (311)
T PF02384_consen 106 NINIIQGDSLENDK--------------------FIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAF 165 (311)
T ss_dssp GCEEEES-TTTSHS--------------------CTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHH
T ss_pred cccccccccccccc--------------------cccccccccccCCCCccccccccccccccccccccCCCccchhhhh
Confidence 34455555422110 0025689999999997532 137
Q ss_pred HHHHHHcccCCeEEEEe---cCC--CCcHHHHHHHHHhh
Q 047371 166 ADHIVSYAKPGAVVGIS---GIL--SEQLPRIINRYSEF 199 (222)
Q Consensus 166 l~~~~~~LkpgG~l~~~---~~~--~~~~~~~~~~~~~~ 199 (222)
+..+.+.|++||.+.+. .+. ......+++.+.+.
T Consensus 166 i~~~l~~Lk~~G~~~~Ilp~~~L~~~~~~~~iR~~ll~~ 204 (311)
T PF02384_consen 166 IEHALSLLKPGGRAAIILPNGFLFSSSSEKKIRKYLLEN 204 (311)
T ss_dssp HHHHHHTEEEEEEEEEEEEHHHHHGSTHHHHHHHHHHHH
T ss_pred HHHHHhhcccccceeEEecchhhhccchHHHHHHHHHhh
Confidence 89999999999997652 222 22345676666554
No 175
>PLN02823 spermine synthase
Probab=99.01 E-value=2e-08 Score=86.80 Aligned_cols=143 Identities=17% Similarity=0.268 Sum_probs=99.9
Q ss_pred hcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcC--CCCCceeEEecCCcccccccccccccc
Q 047371 56 IKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNN--IGPKKIKLHLVPDRTFTASMNERVDGV 132 (222)
Q Consensus 56 ~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~ 132 (222)
.+..++||.+|+|.|..+..+.+. +..+++.+|+++.+++.|++.+...+ +...++++...|+..+..
T Consensus 101 ~~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~--------- 171 (336)
T PLN02823 101 HPNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELE--------- 171 (336)
T ss_pred CCCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHh---------
Confidence 345679999999999999988875 45789999999999999999875322 334688888888765421
Q ss_pred hhccccccccCCCCCCCeeEEEecccc--------cc-HHHHHH-HHHHcccCCeEEEEecCC------CCcHHHHHHHH
Q 047371 133 VEYLSSHEIRGISETEEYDVVIANILL--------NP-LPQLAD-HIVSYAKPGAVVGISGIL------SEQLPRIINRY 196 (222)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~D~v~~~~~~--------~~-~~~~l~-~~~~~LkpgG~l~~~~~~------~~~~~~~~~~~ 196 (222)
...++||+|+++.+- +. ..++++ .+.+.|+|||++++.... ......+.+.+
T Consensus 172 ------------~~~~~yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~s~~~~~~~~~~~~i~~tl 239 (336)
T PLN02823 172 ------------KRDEKFDVIIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAGPAGILTHKEVFSSIYNTL 239 (336)
T ss_pred ------------hCCCCccEEEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEeccCcchhccHHHHHHHHHHH
Confidence 035679999997421 11 346787 899999999998874211 12245566667
Q ss_pred Hhhhhcceecc------cCCceEeecccC
Q 047371 197 SEFLEDILVSE------KDDWRCVSGTKF 219 (222)
Q Consensus 197 ~~~~~~~~~~~------~~~w~~~~~~k~ 219 (222)
.+.|..+.... .+.|.-+.+.|.
T Consensus 240 ~~vF~~v~~y~~~vPsf~~~w~f~~aS~~ 268 (336)
T PLN02823 240 RQVFKYVVPYTAHVPSFADTWGWVMASDH 268 (336)
T ss_pred HHhCCCEEEEEeecCCCCCceEEEEEeCC
Confidence 77676554432 245877777653
No 176
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=99.01 E-value=3.5e-09 Score=86.64 Aligned_cols=104 Identities=16% Similarity=0.166 Sum_probs=85.6
Q ss_pred CcEEEEccCCCHHHHHHHH-hCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcccc
Q 047371 60 ELFLDYGTGSGILGIAAIK-FGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSS 138 (222)
Q Consensus 60 ~~vLD~G~G~G~~~~~la~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (222)
..+||+|||.|.+...+|+ ++...++|+|+....+..|.+.+...++. |+.+...|+..+.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~--Nlri~~~DA~~~l---------------- 111 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLK--NLRLLCGDAVEVL---------------- 111 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCC--cEEEEcCCHHHHH----------------
Confidence 4799999999999998886 47789999999999999999999999986 7888888876542
Q ss_pred ccccCCCCCCCeeEEEecccccc-----------HHHHHHHHHHcccCCeEEEEecC
Q 047371 139 HEIRGISETEEYDVVIANILLNP-----------LPQLADHIVSYAKPGAVVGISGI 184 (222)
Q Consensus 139 ~~~~~~~~~~~~D~v~~~~~~~~-----------~~~~l~~~~~~LkpgG~l~~~~~ 184 (222)
....++++.|-|..+.|=.+ ...+++.+.+.|||||.+.+.+-
T Consensus 112 ---~~~~~~~sl~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD 165 (227)
T COG0220 112 ---DYLIPDGSLDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATD 165 (227)
T ss_pred ---HhcCCCCCeeEEEEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEec
Confidence 22335668999999876433 45689999999999999999643
No 177
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.96 E-value=3.5e-09 Score=85.51 Aligned_cols=141 Identities=23% Similarity=0.228 Sum_probs=102.1
Q ss_pred hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371 56 IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY 135 (222)
Q Consensus 56 ~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 135 (222)
++.|.+|||.|.|-|+.++..++.|+.+|+.+|.++..++.|+-|--..++....+++..+|...+. ..+
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V-------~~~--- 201 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVV-------KDF--- 201 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHH-------hcC---
Confidence 4469999999999999999999999889999999999999998876555665456777777764432 222
Q ss_pred cccccccCCCCCCCeeEEEecccccc------HHHHHHHHHHcccCCeEEEEe-cCC------CCcHHHHHHHHHhh-hh
Q 047371 136 LSSHEIRGISETEEYDVVIANILLNP------LPQLADHIVSYAKPGAVVGIS-GIL------SEQLPRIINRYSEF-LE 201 (222)
Q Consensus 136 ~~~~~~~~~~~~~~~D~v~~~~~~~~------~~~~l~~~~~~LkpgG~l~~~-~~~------~~~~~~~~~~~~~~-~~ 201 (222)
++.+||+|+-+||--. ..++..+++|+|||||.++-. +.+ .+-...+.+.+.+. |.
T Consensus 202 ----------~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~ 271 (287)
T COG2521 202 ----------DDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFE 271 (287)
T ss_pred ----------CccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCce
Confidence 6888999999988643 346889999999999999873 222 23334555555554 53
Q ss_pred cceecccCCceEeeccc
Q 047371 202 DILVSEKDDWRCVSGTK 218 (222)
Q Consensus 202 ~~~~~~~~~w~~~~~~k 218 (222)
. ......|-.+.+.|
T Consensus 272 ~--v~~~~~~~gv~A~k 286 (287)
T COG2521 272 V--VKKVREALGVVAVK 286 (287)
T ss_pred e--eeeehhccceEEec
Confidence 3 33444555555444
No 178
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.96 E-value=5.6e-09 Score=84.75 Aligned_cols=122 Identities=20% Similarity=0.287 Sum_probs=75.1
Q ss_pred CCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCcee----------EEecCC--------
Q 047371 58 GGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIK----------LHLVPD-------- 118 (222)
Q Consensus 58 ~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~----------~~~~~~-------- 118 (222)
.+..+||+||.+|.+++.+++. +...++|+||++..+..|++++....-....+. +.....
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~ 137 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF 137 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence 4678999999999999999975 778899999999999999998752110000000 000000
Q ss_pred -cccccccccccccchhccccccccCCCCCCCeeEEEecccc---------ccHHHHHHHHHHcccCCeEEEEe
Q 047371 119 -RTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILL---------NPLPQLADHIVSYAKPGAVVGIS 182 (222)
Q Consensus 119 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~---------~~~~~~l~~~~~~LkpgG~l~~~ 182 (222)
..++.+ ..+..+....+ .+++. +.....||+|+|-... +.+..++..++++|.|||++++.
T Consensus 138 t~~~p~n-~~f~~~n~vle-~~dfl-~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 138 TTDFPDN-VWFQKENYVLE-SDDFL-DMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred cccCCcc-hhcccccEEEe-cchhh-hhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 000000 00000011111 11122 2356789999984432 22778999999999999999994
No 179
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.92 E-value=5.8e-09 Score=84.62 Aligned_cols=113 Identities=13% Similarity=0.205 Sum_probs=80.5
Q ss_pred cEEEEccCCCHHHHHHHHh-CC--CEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccc
Q 047371 61 LFLDYGTGSGILGIAAIKF-GA--AMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLS 137 (222)
Q Consensus 61 ~vLD~G~G~G~~~~~la~~-~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (222)
+||++|||.|.....+.+. +. -.++++|.+|.+++..+++..... .++.....|.... ....+.
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e---~~~~afv~Dlt~~-----~~~~~~----- 140 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE---SRVEAFVWDLTSP-----SLKEPP----- 140 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch---hhhcccceeccch-----hccCCC-----
Confidence 7999999999998887763 32 579999999999999998765433 2333333333221 111222
Q ss_pred cccccCCCCCCCeeEEEecccccc-----HHHHHHHHHHcccCCeEEEEecCCCCcHHHHHH
Q 047371 138 SHEIRGISETEEYDVVIANILLNP-----LPQLADHIVSYAKPGAVVGISGILSEQLPRIIN 194 (222)
Q Consensus 138 ~~~~~~~~~~~~~D~v~~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~ 194 (222)
..+++|++.+...+.. +...++++.++|||||.+++-+........++-
T Consensus 141 --------~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF 194 (264)
T KOG2361|consen 141 --------EEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRF 194 (264)
T ss_pred --------CcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhc
Confidence 5778999988665543 556899999999999999997776666655543
No 180
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=1e-08 Score=81.55 Aligned_cols=114 Identities=20% Similarity=0.333 Sum_probs=86.3
Q ss_pred hhHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHh---CCCEEEEEeCChHHHHHHHHHHHhcC--------CCCCcee
Q 047371 44 TTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKF---GAAMFVGVDIDPQVIKSAHQNAALNN--------IGPKKIK 112 (222)
Q Consensus 44 ~~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~---~~~~v~gvD~s~~~l~~a~~~~~~~~--------~~~~~v~ 112 (222)
.-..+++.|...++||.++||+|.|+|+++..++.. +....+|+|.-+..++.+++++...- ++..++.
T Consensus 68 mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ 147 (237)
T KOG1661|consen 68 MHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELS 147 (237)
T ss_pred HHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceE
Confidence 455567777777899999999999999999988853 23445999999999999999986432 2224455
Q ss_pred EEecCCcccccccccccccchhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEe
Q 047371 113 LHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGIS 182 (222)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 182 (222)
++.+|...- +.+..+||.|.+...- .+..+.+...|++||.+++-
T Consensus 148 ivvGDgr~g----------------------~~e~a~YDaIhvGAaa---~~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 148 IVVGDGRKG----------------------YAEQAPYDAIHVGAAA---SELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred EEeCCcccc----------------------CCccCCcceEEEccCc---cccHHHHHHhhccCCeEEEe
Confidence 666655332 3477899999986433 46678888899999999984
No 181
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.91 E-value=1.7e-08 Score=90.37 Aligned_cols=113 Identities=20% Similarity=0.331 Sum_probs=82.8
Q ss_pred hhHHHHHHHHhhhcC------CCcEEEEccCCCHHHHHHHHhC-----CCEEEEEeCChHHHHHHHHHHHhcCCCCCcee
Q 047371 44 TTKLCLLLLQSLIKG------GELFLDYGTGSGILGIAAIKFG-----AAMFVGVDIDPQVIKSAHQNAALNNIGPKKIK 112 (222)
Q Consensus 44 ~~~~~~~~l~~~~~~------~~~vLD~G~G~G~~~~~la~~~-----~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~ 112 (222)
+.+++.+++...... +..|+|+|||+|.++...++.+ ..+|+|+|-|+.++...++.+..++.. ++|+
T Consensus 166 Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~-~~V~ 244 (448)
T PF05185_consen 166 YERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWG-DKVT 244 (448)
T ss_dssp HHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTT-TTEE
T ss_pred HHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCC-CeEE
Confidence 556667777666443 4689999999999988766543 579999999999888888777778886 5899
Q ss_pred EEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccc-----ccHHHHHHHHHHcccCCeEEE
Q 047371 113 LHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILL-----NPLPQLADHIVSYAKPGAVVG 180 (222)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~-----~~~~~~l~~~~~~LkpgG~l~ 180 (222)
++.++.+.+. ...++|+|++-..- +.+.+.+....+.|||+|..+
T Consensus 245 vi~~d~r~v~-----------------------lpekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 245 VIHGDMREVE-----------------------LPEKVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp EEES-TTTSC-----------------------HSS-EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred EEeCcccCCC-----------------------CCCceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 9999887663 35589999985432 235677899999999998765
No 182
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.89 E-value=2.1e-09 Score=86.16 Aligned_cols=122 Identities=12% Similarity=0.227 Sum_probs=72.0
Q ss_pred CCcEEEEccCCCH----HHHHHHHh-----C-CCEEEEEeCChHHHHHHHHHHHh----cCCCCCcee--EEecCCcccc
Q 047371 59 GELFLDYGTGSGI----LGIAAIKF-----G-AAMFVGVDIDPQVIKSAHQNAAL----NNIGPKKIK--LHLVPDRTFT 122 (222)
Q Consensus 59 ~~~vLD~G~G~G~----~~~~la~~-----~-~~~v~gvD~s~~~l~~a~~~~~~----~~~~~~~v~--~~~~~~~~~~ 122 (222)
.-+||.+||++|. +++.+.+. + .-+|+|+|+|+.+++.|++.... .++...... |...+...+
T Consensus 32 ~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~- 110 (196)
T PF01739_consen 32 PLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY- 110 (196)
T ss_dssp -EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT-
T ss_pred CeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce-
Confidence 4589999999994 44444441 1 24899999999999999885531 121110011 212222222
Q ss_pred cccccccccchhccccccccCCCCCCCeeEEEecccccc-----HHHHHHHHHHcccCCeEEEEe
Q 047371 123 ASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP-----LPQLADHIVSYAKPGAVVGIS 182 (222)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~ 182 (222)
.+.+.+...+.++..|.+......+.||+|+|..++-. ...+++.+++.|+|||++++.
T Consensus 111 -~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG 174 (196)
T PF01739_consen 111 -RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLG 174 (196)
T ss_dssp -TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-
T ss_pred -eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence 35566777888888888885557889999999555433 345899999999999999994
No 183
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.87 E-value=1.6e-08 Score=85.70 Aligned_cols=99 Identities=24% Similarity=0.267 Sum_probs=79.3
Q ss_pred CCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccc
Q 047371 58 GGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLS 137 (222)
Q Consensus 58 ~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (222)
.++.|||+|||+|.++..++..|.++|+++|-|. |.+.|++.+..+++. +++.++.+..+...
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~-MAqyA~~Lv~~N~~~-~rItVI~GKiEdie--------------- 239 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE-MAQYARKLVASNNLA-DRITVIPGKIEDIE--------------- 239 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcceEEEEehhH-HHHHHHHHHhcCCcc-ceEEEccCcccccc---------------
Confidence 4778999999999999999999999999999865 899999999888776 68888887776553
Q ss_pred cccccCCCCCCCeeEEEecccccc-----HHHHHHHHHHcccCCeEEEE
Q 047371 138 SHEIRGISETEEYDVVIANILLNP-----LPQLADHIVSYAKPGAVVGI 181 (222)
Q Consensus 138 ~~~~~~~~~~~~~D~v~~~~~~~~-----~~~~l~~~~~~LkpgG~l~~ 181 (222)
-.++.|++++.|+-.- +-+..-.+++.|||.|..+=
T Consensus 240 --------LPEk~DviISEPMG~mL~NERMLEsYl~Ark~l~P~GkMfP 280 (517)
T KOG1500|consen 240 --------LPEKVDVIISEPMGYMLVNERMLESYLHARKWLKPNGKMFP 280 (517)
T ss_pred --------CchhccEEEeccchhhhhhHHHHHHHHHHHhhcCCCCcccC
Confidence 3667999999775432 22234456799999998763
No 184
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.86 E-value=3e-08 Score=80.89 Aligned_cols=135 Identities=21% Similarity=0.246 Sum_probs=87.1
Q ss_pred HHHHHHhh-hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHh-cCC---------CCCceeEEec
Q 047371 48 CLLLLQSL-IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAAL-NNI---------GPKKIKLHLV 116 (222)
Q Consensus 48 ~~~~l~~~-~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~-~~~---------~~~~v~~~~~ 116 (222)
+.+++... .+++.+||..|||.|.-...|++.|. +|+|+|+|+.+++.+.+.... ... ...++++..+
T Consensus 26 L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~g 104 (218)
T PF05724_consen 26 LVEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCG 104 (218)
T ss_dssp HHHHHHHHTTSTSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES
T ss_pred HHHHHHhcCCCCCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEc
Confidence 33444443 45677999999999999999999874 899999999999998432211 111 1134566676
Q ss_pred CCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc-----HHHHHHHHHHcccCCeEEEEecC-------
Q 047371 117 PDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP-----LPQLADHIVSYAKPGAVVGISGI------- 184 (222)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~------- 184 (222)
|.-.+.. ...++||+|+-...+.. ..++.+++.++|+|||.+++.++
T Consensus 105 DfF~l~~---------------------~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~ 163 (218)
T PF05724_consen 105 DFFELPP---------------------EDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEM 163 (218)
T ss_dssp -TTTGGG---------------------SCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCS
T ss_pred ccccCCh---------------------hhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCC
Confidence 6644321 02347999997544433 45789999999999999443111
Q ss_pred ----CCCcHHHHHHHHHhhhhcce
Q 047371 185 ----LSEQLPRIINRYSEFLEDIL 204 (222)
Q Consensus 185 ----~~~~~~~~~~~~~~~~~~~~ 204 (222)
..-...++.+.+...|+...
T Consensus 164 ~GPPf~v~~~ev~~l~~~~f~i~~ 187 (218)
T PF05724_consen 164 EGPPFSVTEEEVRELFGPGFEIEE 187 (218)
T ss_dssp SSSS----HHHHHHHHTTTEEEEE
T ss_pred CCcCCCCCHHHHHHHhcCCcEEEE
Confidence 13455778888877665444
No 185
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.86 E-value=6.2e-08 Score=79.21 Aligned_cols=124 Identities=10% Similarity=0.102 Sum_probs=84.0
Q ss_pred cCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhc----------CCCCCceeEEecCCcccccccc
Q 047371 57 KGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALN----------NIGPKKIKLHLVPDRTFTASMN 126 (222)
Q Consensus 57 ~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~----------~~~~~~v~~~~~~~~~~~~~~~ 126 (222)
.++.+||+.|||.|.-+..|++.|. +|+|+|+|+.+++.+.+..... .....++++..+|.-.+...
T Consensus 42 ~~~~rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~-- 118 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKI-- 118 (226)
T ss_pred CCCCeEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcc--
Confidence 4578999999999999999999986 6999999999999986522100 00113566666665433110
Q ss_pred cccccchhccccccccCCCCCCCeeEEEecccccc-----HHHHHHHHHHcccCCeEEEEecCC----------CCcHHH
Q 047371 127 ERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP-----LPQLADHIVSYAKPGAVVGISGIL----------SEQLPR 191 (222)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~~----------~~~~~~ 191 (222)
-...++||+|.-...+.. ..++++++.++|+|||.+++..+. .-...+
T Consensus 119 -----------------~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~~~~~~GPPf~v~~~e 181 (226)
T PRK13256 119 -----------------ANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEHDKKSQTPPYSVTQAE 181 (226)
T ss_pred -----------------ccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEecCCCCCCCCCcCCHHH
Confidence 002357999886554433 456899999999999998874331 234466
Q ss_pred HHHHHHhhh
Q 047371 192 IINRYSEFL 200 (222)
Q Consensus 192 ~~~~~~~~~ 200 (222)
+.+.+.+.+
T Consensus 182 ~~~lf~~~~ 190 (226)
T PRK13256 182 LIKNFSAKI 190 (226)
T ss_pred HHHhccCCc
Confidence 777776653
No 186
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.85 E-value=5.1e-08 Score=84.58 Aligned_cols=105 Identities=28% Similarity=0.322 Sum_probs=84.8
Q ss_pred hcCCCcEEEEccCCCHHHHHHHHhCC---------------------------------C-------EEEEEeCChHHHH
Q 047371 56 IKGGELFLDYGTGSGILGIAAIKFGA---------------------------------A-------MFVGVDIDPQVIK 95 (222)
Q Consensus 56 ~~~~~~vLD~G~G~G~~~~~la~~~~---------------------------------~-------~v~gvD~s~~~l~ 95 (222)
-+++..++|.-||+|.+++.+|.... + .++|+|+++.+++
T Consensus 189 w~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~ 268 (381)
T COG0116 189 WKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIE 268 (381)
T ss_pred CCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHH
Confidence 34667999999999999998875431 1 3789999999999
Q ss_pred HHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc-----------HHH
Q 047371 96 SAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP-----------LPQ 164 (222)
Q Consensus 96 ~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~-----------~~~ 164 (222)
.|+.|+...|+. +.|.|...|+..+.. +.+.+|++++|||+.- +..
T Consensus 269 ~Ak~NA~~AGv~-d~I~f~~~d~~~l~~----------------------~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~ 325 (381)
T COG0116 269 GAKANARAAGVG-DLIEFKQADATDLKE----------------------PLEEYGVVISNPPYGERLGSEALVAKLYRE 325 (381)
T ss_pred HHHHHHHhcCCC-ceEEEEEcchhhCCC----------------------CCCcCCEEEeCCCcchhcCChhhHHHHHHH
Confidence 999999999997 689999999877642 2368999999999853 455
Q ss_pred HHHHHHHcccCCeEEEEec
Q 047371 165 LADHIVSYAKPGAVVGISG 183 (222)
Q Consensus 165 ~l~~~~~~LkpgG~l~~~~ 183 (222)
+.+.+.+.++--+..++++
T Consensus 326 fg~~lk~~~~~ws~~v~tt 344 (381)
T COG0116 326 FGRTLKRLLAGWSRYVFTT 344 (381)
T ss_pred HHHHHHHHhcCCceEEEEc
Confidence 6778888888888877753
No 187
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=98.84 E-value=6.1e-08 Score=82.09 Aligned_cols=142 Identities=16% Similarity=0.175 Sum_probs=98.3
Q ss_pred ccccCCcchhHHHHHHHHhh--hcCCCcEEEEccCCCHHHHHHHHh--CCCEEEEEeCChHHHHHHHHHHHhcCCCCCce
Q 047371 36 AFGTGEHATTKLCLLLLQSL--IKGGELFLDYGTGSGILGIAAIKF--GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKI 111 (222)
Q Consensus 36 ~f~~~~~~~~~~~~~~l~~~--~~~~~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v 111 (222)
.|..|..........+.... .+++..|||++++.|.-+.+++.. +.+.+++.|+++..+...+.++.+.|+. ++
T Consensus 61 ~~~~G~~~vQd~sS~l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~--~v 138 (283)
T PF01189_consen 61 EFKNGLFYVQDESSQLVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVF--NV 138 (283)
T ss_dssp HHHTTSEEEHHHHHHHHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-S--SE
T ss_pred hhhCCcEEecccccccccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCc--eE
Confidence 45555555444444443332 457899999999999999988875 3579999999999999999999999986 66
Q ss_pred eEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc-------------------------HHHHH
Q 047371 112 KLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP-------------------------LPQLA 166 (222)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~-------------------------~~~~l 166 (222)
.....|...+.. ......||.|+.+.|+.. ..+++
T Consensus 139 ~~~~~D~~~~~~--------------------~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL 198 (283)
T PF01189_consen 139 IVINADARKLDP--------------------KKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREIL 198 (283)
T ss_dssp EEEESHHHHHHH--------------------HHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHH
T ss_pred EEEeeccccccc--------------------cccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHH
Confidence 666555433310 002346999999888643 23579
Q ss_pred HHHHHcc----cCCeEEEEecC--CCCcHHHHHH-HHHhh
Q 047371 167 DHIVSYA----KPGAVVGISGI--LSEQLPRIIN-RYSEF 199 (222)
Q Consensus 167 ~~~~~~L----kpgG~l~~~~~--~~~~~~~~~~-~~~~~ 199 (222)
+.+.+.+ ||||++++++. ..++.+++++ .++.+
T Consensus 199 ~~a~~~~~~~~k~gG~lvYsTCS~~~eENE~vV~~fl~~~ 238 (283)
T PF01189_consen 199 DNAAKLLNIDFKPGGRLVYSTCSLSPEENEEVVEKFLKRH 238 (283)
T ss_dssp HHHHHCEHHHBEEEEEEEEEESHHHGGGTHHHHHHHHHHS
T ss_pred HHHHHhhcccccCCCeEEEEeccHHHHHHHHHHHHHHHhC
Confidence 9999999 99999998644 3344444444 44443
No 188
>PRK00536 speE spermidine synthase; Provisional
Probab=98.83 E-value=1e-07 Score=79.62 Aligned_cols=135 Identities=11% Similarity=-0.001 Sum_probs=95.3
Q ss_pred hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHh--cCCCCCceeEEecCCcccccccccccccch
Q 047371 56 IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAAL--NNIGPKKIKLHLVPDRTFTASMNERVDGVV 133 (222)
Q Consensus 56 ~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 133 (222)
.+..++||-+|.|.|..+..+.+++ .+|+-+|+++.+++.+++.+.. .+++..++++... +. .
T Consensus 70 h~~pk~VLIiGGGDGg~~REvLkh~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~----~~--------~-- 134 (262)
T PRK00536 70 KKELKEVLIVDGFDLELAHQLFKYD-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ----LL--------D-- 134 (262)
T ss_pred CCCCCeEEEEcCCchHHHHHHHCcC-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh----hh--------h--
Confidence 4567999999999999999999987 4999999999999999996653 2344456665531 10 0
Q ss_pred hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEe-cCC---CCcHHHHHHHHHhhhhccee----
Q 047371 134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGIS-GIL---SEQLPRIINRYSEFLEDILV---- 205 (222)
Q Consensus 134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~-~~~---~~~~~~~~~~~~~~~~~~~~---- 205 (222)
...++||+|+++..+. ..+.+.+.+.|+|||.++.. +.+ .+....+.+.+...|.....
T Consensus 135 -----------~~~~~fDVIIvDs~~~--~~fy~~~~~~L~~~Gi~v~Qs~sp~~~~~~~~~i~~~l~~~F~~v~~y~~~ 201 (262)
T PRK00536 135 -----------LDIKKYDLIICLQEPD--IHKIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGDFFSIAMPFVAP 201 (262)
T ss_pred -----------ccCCcCCEEEEcCCCC--hHHHHHHHHhcCCCcEEEECCCCcccCHHHHHHHHHHHHhhCCceEEEEec
Confidence 0246899999986544 67889999999999999983 222 23335555566665653332
Q ss_pred -cccCCceEeeccc
Q 047371 206 -SEKDDWRCVSGTK 218 (222)
Q Consensus 206 -~~~~~w~~~~~~k 218 (222)
...|.|.-+.+.|
T Consensus 202 vp~~g~wgf~~aS~ 215 (262)
T PRK00536 202 LRILSNKGYIYASF 215 (262)
T ss_pred CCCcchhhhheecC
Confidence 2236786666655
No 189
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.81 E-value=6.7e-08 Score=79.19 Aligned_cols=49 Identities=22% Similarity=0.281 Sum_probs=39.9
Q ss_pred HHHHHHhh--hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHH
Q 047371 48 CLLLLQSL--IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKS 96 (222)
Q Consensus 48 ~~~~l~~~--~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~ 96 (222)
+..++..+ ..+++++||+|||+|.++..+++.+..+|+|+|+++.++..
T Consensus 63 L~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 63 LKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAE 113 (228)
T ss_pred HHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence 34444443 23678999999999999999999888899999999988866
No 190
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.81 E-value=7e-08 Score=77.24 Aligned_cols=123 Identities=14% Similarity=0.144 Sum_probs=85.0
Q ss_pred HHHHHHHHhhhcCCCc-EEEEccCCCHHHHHHHH-hCCCEEEEEeCChHHHHHHHHHHHhcCCCCCcee-EEecCCcccc
Q 047371 46 KLCLLLLQSLIKGGEL-FLDYGTGSGILGIAAIK-FGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIK-LHLVPDRTFT 122 (222)
Q Consensus 46 ~~~~~~l~~~~~~~~~-vLD~G~G~G~~~~~la~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~-~~~~~~~~~~ 122 (222)
.-+++.|++++++... |||+|+|+|..+..+++ .+.-+..-.|.++..+......+...++. |+. -...|+....
T Consensus 12 ~pIl~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~--Nv~~P~~lDv~~~~ 89 (204)
T PF06080_consen 12 DPILEVLKQYLPDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLP--NVRPPLALDVSAPP 89 (204)
T ss_pred hHHHHHHHHHhCccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCc--ccCCCeEeecCCCC
Confidence 4467788887776665 99999999999998886 47677888899999988888777766654 221 1222322211
Q ss_pred cccccccccchhccccccccCCCCCCCeeEEEecccccc-----HHHHHHHHHHcccCCeEEEEecC
Q 047371 123 ASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP-----LPQLADHIVSYAKPGAVVGISGI 184 (222)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~ 184 (222)
+.... ..+. ..++||.|++..++|. ...+++.+.++|++||.+++.+.
T Consensus 90 w~~~~-~~~~-------------~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGP 142 (204)
T PF06080_consen 90 WPWEL-PAPL-------------SPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGP 142 (204)
T ss_pred Ccccc-cccc-------------CCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence 10000 0000 3568999999777765 34589999999999999999654
No 191
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.79 E-value=2.9e-08 Score=83.96 Aligned_cols=124 Identities=10% Similarity=0.185 Sum_probs=79.8
Q ss_pred CCcEEEEccCCCH----HHHHHHHh-C----CCEEEEEeCChHHHHHHHHHHHh----cCCCCCceeEEecC--C-cccc
Q 047371 59 GELFLDYGTGSGI----LGIAAIKF-G----AAMFVGVDIDPQVIKSAHQNAAL----NNIGPKKIKLHLVP--D-RTFT 122 (222)
Q Consensus 59 ~~~vLD~G~G~G~----~~~~la~~-~----~~~v~gvD~s~~~l~~a~~~~~~----~~~~~~~v~~~~~~--~-~~~~ 122 (222)
.-+||..||++|. +++.+.+. + ..+|+|+|+|+.+++.|++.... .++......-++.. . ..-.
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 3699999999994 44444442 1 35799999999999999886431 11111011111110 0 0001
Q ss_pred cccccccccchhccccccccC-CCCCCCeeEEEecccccc-----HHHHHHHHHHcccCCeEEEEe
Q 047371 123 ASMNERVDGVVEYLSSHEIRG-ISETEEYDVVIANILLNP-----LPQLADHIVSYAKPGAVVGIS 182 (222)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~v~~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~ 182 (222)
+.+.+.+...|.++-.|.+.. +.+.+.||+|+|..++.+ ...+++.+.+.|+|||++++.
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 234455667777777777773 444678999999554433 456899999999999998884
No 192
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.78 E-value=1.7e-07 Score=77.79 Aligned_cols=172 Identities=16% Similarity=0.210 Sum_probs=106.8
Q ss_pred eeEEeCCCcccccCC-cchhHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHhC-CCEEEEEeCChHHHHHHHHHHHhc
Q 047371 27 TNIILNPGLAFGTGE-HATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFG-AAMFVGVDIDPQVIKSAHQNAALN 104 (222)
Q Consensus 27 ~~~~~~~~~~f~~~~-~~~~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~ 104 (222)
+.+.++-...+.... ....+++........+.+++||-+|.|.|..+..+.+++ ..+++.+|+++.+++.|++.+...
T Consensus 44 ~~l~ldg~~q~~e~de~~y~e~l~h~~~~~~~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~ 123 (246)
T PF01564_consen 44 RILVLDGDVQLSERDEFIYHEMLVHPPLLLHPNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEF 123 (246)
T ss_dssp EEEEETTEEEEETTTHHHHHHHHHHHHHHHSSST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHH
T ss_pred cEEEECCeEEEEEechHHHHHHHhhhHhhcCCCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhh
Confidence 333445554443222 223333333332334568999999999999999988875 579999999999999999977642
Q ss_pred C--CCCCceeEEecCCcccccccccccccchhccccccccCCCCCC-CeeEEEeccccc-------cHHHHHHHHHHccc
Q 047371 105 N--IGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETE-EYDVVIANILLN-------PLPQLADHIVSYAK 174 (222)
Q Consensus 105 ~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~D~v~~~~~~~-------~~~~~l~~~~~~Lk 174 (222)
. ....++++...|+..+.. . ..+ +||+|+.+..-. ...++++.+.+.|+
T Consensus 124 ~~~~~d~r~~i~~~Dg~~~l~-------------------~--~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~ 182 (246)
T PF01564_consen 124 SEGLDDPRVRIIIGDGRKFLK-------------------E--TQEEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLK 182 (246)
T ss_dssp HTTGGSTTEEEEESTHHHHHH-------------------T--SSST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEE
T ss_pred ccccCCCceEEEEhhhHHHHH-------------------h--ccCCcccEEEEeCCCCCCCcccccCHHHHHHHHhhcC
Confidence 2 334688999888765521 1 233 899999855321 13678999999999
Q ss_pred CCeEEEEec-CC---CCcHHHHHHHHHhhhhccee-------cccCCceEeecccC
Q 047371 175 PGAVVGISG-IL---SEQLPRIINRYSEFLEDILV-------SEKDDWRCVSGTKF 219 (222)
Q Consensus 175 pgG~l~~~~-~~---~~~~~~~~~~~~~~~~~~~~-------~~~~~w~~~~~~k~ 219 (222)
|+|.+++.. .. ......+.+.+...|..... ...+.|.-..+++.
T Consensus 183 ~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~F~~v~~~~~~vP~~~~~~~~~~~~s~~ 238 (246)
T PF01564_consen 183 PDGVLVLQAGSPFLHPELFKSILKTLRSVFPQVKPYTAYVPSYGSGWWSFASASKD 238 (246)
T ss_dssp EEEEEEEEEEETTTTHHHHHHHHHHHHTTSSEEEEEEEECTTSCSSEEEEEEEESS
T ss_pred CCcEEEEEccCcccchHHHHHHHHHHHHhCCceEEEEEEcCeecccceeEEEEeCC
Confidence 999999842 12 23334445555555543322 22344555555543
No 193
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.78 E-value=3.1e-09 Score=85.60 Aligned_cols=111 Identities=23% Similarity=0.363 Sum_probs=75.5
Q ss_pred hhHHHHHHHHhhh-cCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccc
Q 047371 44 TTKLCLLLLQSLI-KGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFT 122 (222)
Q Consensus 44 ~~~~~~~~l~~~~-~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~ 122 (222)
.+.++.+.+...- .+-.++||+|||+|..+..+... ..+++|+|+|..|++.|.+.-....+ ...+...|
T Consensus 110 vP~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~-a~~ltGvDiS~nMl~kA~eKg~YD~L-------~~Aea~~F- 180 (287)
T COG4976 110 VPELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDM-ADRLTGVDISENMLAKAHEKGLYDTL-------YVAEAVLF- 180 (287)
T ss_pred cHHHHHHHHHhccCCccceeeecccCcCcccHhHHHH-HhhccCCchhHHHHHHHHhccchHHH-------HHHHHHHH-
Confidence 4455555554442 22479999999999999988766 36799999999999999764221111 11111111
Q ss_pred cccccccccchhccccccccCCCCCCCeeEEEecccccc---HHHHHHHHHHcccCCeEEEEe
Q 047371 123 ASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP---LPQLADHIVSYAKPGAVVGIS 182 (222)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~ 182 (222)
.... ..++||+|.+..++.. +..++..+...|+|||.+.++
T Consensus 181 ------l~~~-------------~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFS 224 (287)
T COG4976 181 ------LEDL-------------TQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFS 224 (287)
T ss_pred ------hhhc-------------cCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEE
Confidence 0001 4678999998766543 567899999999999999985
No 194
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.76 E-value=1.4e-07 Score=77.91 Aligned_cols=126 Identities=17% Similarity=0.143 Sum_probs=95.9
Q ss_pred hcCCCcEEEEccCCCHHHHHHHHh--CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371 56 IKGGELFLDYGTGSGILGIAAIKF--GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV 133 (222)
Q Consensus 56 ~~~~~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 133 (222)
+.||.+|++-|+|+|+++..+++. +-++++..|+.....+.|.+..+..++. +++++..-|....-+
T Consensus 103 i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~-~~vt~~hrDVc~~GF---------- 171 (314)
T KOG2915|consen 103 IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIG-DNVTVTHRDVCGSGF---------- 171 (314)
T ss_pred CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCC-cceEEEEeecccCCc----------
Confidence 679999999999999999988874 5689999999999999999999999986 689888887754321
Q ss_pred hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeE-EEEecCCCCcHHHHHHHHHhh-hhcce
Q 047371 134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAV-VGISGILSEQLPRIINRYSEF-LEDIL 204 (222)
Q Consensus 134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~-l~~~~~~~~~~~~~~~~~~~~-~~~~~ 204 (222)
.. +...+|.|+.+.|-. ...+..+.++||.+|. ++....+-++...-.+.+... |..++
T Consensus 172 ---------~~-ks~~aDaVFLDlPaP--w~AiPha~~~lk~~g~r~csFSPCIEQvqrtce~l~~~gf~~i~ 232 (314)
T KOG2915|consen 172 ---------LI-KSLKADAVFLDLPAP--WEAIPHAAKILKDEGGRLCSFSPCIEQVQRTCEALRSLGFIEIE 232 (314)
T ss_pred ---------cc-cccccceEEEcCCCh--hhhhhhhHHHhhhcCceEEeccHHHHHHHHHHHHHHhCCCceEE
Confidence 01 366899999887764 4567777788998885 444344556666777776663 43343
No 195
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.75 E-value=2.9e-08 Score=74.70 Aligned_cols=79 Identities=24% Similarity=0.318 Sum_probs=64.6
Q ss_pred CCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccc
Q 047371 58 GGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLS 137 (222)
Q Consensus 58 ~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (222)
.|+.++|+|||.|-+++..+..+...++|+|++|.+++.+.+|+....++ +++.+++......
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvq---idlLqcdildle~-------------- 110 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQ---IDLLQCDILDLEL-------------- 110 (185)
T ss_pred cCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhh---hheeeeeccchhc--------------
Confidence 68999999999999987666667789999999999999999998877663 4666666654432
Q ss_pred cccccCCCCCCCeeEEEecccccc
Q 047371 138 SHEIRGISETEEYDVVIANILLNP 161 (222)
Q Consensus 138 ~~~~~~~~~~~~~D~v~~~~~~~~ 161 (222)
..+.||.++.|+|+.-
T Consensus 111 --------~~g~fDtaviNppFGT 126 (185)
T KOG3420|consen 111 --------KGGIFDTAVINPPFGT 126 (185)
T ss_pred --------cCCeEeeEEecCCCCc
Confidence 4578999999999864
No 196
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.73 E-value=2.8e-07 Score=78.28 Aligned_cols=71 Identities=20% Similarity=0.216 Sum_probs=55.6
Q ss_pred HHHHHHHhh-hcCCCcEEEEccCCCHHHHHHHHhC--CCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccc
Q 047371 47 LCLLLLQSL-IKGGELFLDYGTGSGILGIAAIKFG--AAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTF 121 (222)
Q Consensus 47 ~~~~~l~~~-~~~~~~vLD~G~G~G~~~~~la~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~ 121 (222)
++.+++..+ .+++..++|.+||.|..+..+++.. ..+|+|+|.++.+++.|++++.. . .++.+...+...+
T Consensus 7 ll~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--~--~ri~~i~~~f~~l 80 (296)
T PRK00050 7 LLDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--F--GRFTLVHGNFSNL 80 (296)
T ss_pred cHHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--C--CcEEEEeCCHHHH
Confidence 344555444 3578899999999999999988763 47899999999999999987654 2 4788888777654
No 197
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.73 E-value=1.2e-07 Score=86.45 Aligned_cols=118 Identities=15% Similarity=0.085 Sum_probs=88.5
Q ss_pred CCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccc
Q 047371 59 GELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLS 137 (222)
Q Consensus 59 ~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (222)
+..+||+|||.|.++..+|.. +...++|+|+....+..+.+.+...++. |+.+...+...+.
T Consensus 348 ~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~--N~~~~~~~~~~~~--------------- 410 (506)
T PRK01544 348 RKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNIT--NFLLFPNNLDLIL--------------- 410 (506)
T ss_pred CceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCC--eEEEEcCCHHHHH---------------
Confidence 557999999999999988864 7789999999999999988888777875 7777666543221
Q ss_pred cccccCCCCCCCeeEEEecccccc-----------HHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHh
Q 047371 138 SHEIRGISETEEYDVVIANILLNP-----------LPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSE 198 (222)
Q Consensus 138 ~~~~~~~~~~~~~D~v~~~~~~~~-----------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~ 198 (222)
...+++++|.|+++.|-.| ...+++.+.+.|||||.+.+.+--..-.....+.+.+
T Consensus 411 -----~~~~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~y~~~~~~~~~~ 477 (506)
T PRK01544 411 -----NDLPNNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIENYFYEAIELIQQ 477 (506)
T ss_pred -----HhcCcccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh
Confidence 1126778999999877543 3568999999999999999965444444444444444
No 198
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.71 E-value=2.5e-07 Score=78.11 Aligned_cols=103 Identities=18% Similarity=0.213 Sum_probs=81.3
Q ss_pred CCcEEEEccCCCHHHHHHHHhC-CCEEEEEeCChHHHHHHHHHHHhcC--CCCCceeEEecCCcccccccccccccchhc
Q 047371 59 GELFLDYGTGSGILGIAAIKFG-AAMFVGVDIDPQVIKSAHQNAALNN--IGPKKIKLHLVPDRTFTASMNERVDGVVEY 135 (222)
Q Consensus 59 ~~~vLD~G~G~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 135 (222)
.++||-+|.|.|..+..+.+++ -.+++.+|+++..++.+++.+.... ...+++++...|+-.+..
T Consensus 77 pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~------------ 144 (282)
T COG0421 77 PKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLR------------ 144 (282)
T ss_pred CCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHH------------
Confidence 3699999999999999988874 5789999999999999999886433 223688888888766532
Q ss_pred cccccccCCCCCCCeeEEEeccc--ccc-----HHHHHHHHHHcccCCeEEEEe
Q 047371 136 LSSHEIRGISETEEYDVVIANIL--LNP-----LPQLADHIVSYAKPGAVVGIS 182 (222)
Q Consensus 136 ~~~~~~~~~~~~~~~D~v~~~~~--~~~-----~~~~l~~~~~~LkpgG~l~~~ 182 (222)
. ..++||+|+++.. ..+ ...+++.+.++|+++|.++..
T Consensus 145 -------~--~~~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 145 -------D--CEEKFDVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred -------h--CCCcCCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 0 2347999998542 212 467899999999999999985
No 199
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.68 E-value=1.9e-07 Score=77.19 Aligned_cols=92 Identities=16% Similarity=0.272 Sum_probs=72.9
Q ss_pred hhHHHHHHHHhh-hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccc
Q 047371 44 TTKLCLLLLQSL-IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFT 122 (222)
Q Consensus 44 ~~~~~~~~l~~~-~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~ 122 (222)
.+..+.+++... +++++.|||+|.|+|.++..+.+.+ ++|+|+|+++.++...+++.+....+ ..+++..+|....
T Consensus 43 Np~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~-kkVvA~E~Dprmvael~krv~gtp~~-~kLqV~~gD~lK~- 119 (315)
T KOG0820|consen 43 NPLVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAG-KKVVAVEIDPRMVAELEKRVQGTPKS-GKLQVLHGDFLKT- 119 (315)
T ss_pred CHHHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhc-CeEEEEecCcHHHHHHHHHhcCCCcc-ceeeEEecccccC-
Confidence 344444444433 7889999999999999999999886 78999999999999999988765554 4677888877544
Q ss_pred cccccccccchhccccccccCCCCCCCeeEEEecccccc
Q 047371 123 ASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP 161 (222)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~ 161 (222)
+...||.+++|.|+..
T Consensus 120 -----------------------d~P~fd~cVsNlPyqI 135 (315)
T KOG0820|consen 120 -----------------------DLPRFDGCVSNLPYQI 135 (315)
T ss_pred -----------------------CCcccceeeccCCccc
Confidence 4567999999998764
No 200
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.68 E-value=9.9e-08 Score=76.86 Aligned_cols=99 Identities=17% Similarity=0.144 Sum_probs=69.8
Q ss_pred CCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcccc
Q 047371 59 GELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSS 138 (222)
Q Consensus 59 ~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (222)
..+.||.|||.|.++..+...-+.+|-.+|..+..++.|++.+....- .-.++.......+
T Consensus 56 ~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~--~v~~~~~~gLQ~f----------------- 116 (218)
T PF05891_consen 56 FNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNP--RVGEFYCVGLQDF----------------- 116 (218)
T ss_dssp -SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGC--CEEEEEES-GGG------------------
T ss_pred cceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCC--CcceEEecCHhhc-----------------
Confidence 358999999999999977655578999999999999999987654111 1234555544444
Q ss_pred ccccCCCC-CCCeeEEEeccccccHH-----HHHHHHHHcccCCeEEEEe
Q 047371 139 HEIRGISE-TEEYDVVIANILLNPLP-----QLADHIVSYAKPGAVVGIS 182 (222)
Q Consensus 139 ~~~~~~~~-~~~~D~v~~~~~~~~~~-----~~l~~~~~~LkpgG~l~~~ 182 (222)
.| .++||+|.+.-.+.|+. ++++.+...|+|+|.+++.
T Consensus 117 ------~P~~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvK 160 (218)
T PF05891_consen 117 ------TPEEGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVK 160 (218)
T ss_dssp ---------TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ------cCCCCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEE
Confidence 24 47999999988877744 5899999999999999994
No 201
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.68 E-value=5.2e-07 Score=74.93 Aligned_cols=113 Identities=15% Similarity=0.141 Sum_probs=81.8
Q ss_pred ccccCCcchhHHHHHHHHhh-hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEE
Q 047371 36 AFGTGEHATTKLCLLLLQSL-IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLH 114 (222)
Q Consensus 36 ~f~~~~~~~~~~~~~~l~~~-~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~ 114 (222)
.||+..-.....+...+... +.+++.|||+|+|.|.+|..|++.+ .+|+++|+++.++...++.... .++++++
T Consensus 7 ~~GQnFL~d~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~-~~v~aiEiD~~l~~~L~~~~~~----~~n~~vi 81 (259)
T COG0030 7 RLGQNFLIDKNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERA-ARVTAIEIDRRLAEVLKERFAP----YDNLTVI 81 (259)
T ss_pred CcccccccCHHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhc-CeEEEEEeCHHHHHHHHHhccc----ccceEEE
Confidence 34443333333344444433 5568999999999999999999986 5799999999999999887651 2488999
Q ss_pred ecCCcccccccccccccchhccccccccCCCCCC-CeeEEEeccccccHHHHHHHHHHcccC
Q 047371 115 LVPDRTFTASMNERVDGVVEYLSSHEIRGISETE-EYDVVIANILLNPLPQLADHIVSYAKP 175 (222)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~D~v~~~~~~~~~~~~l~~~~~~Lkp 175 (222)
.+|+..+.+ +.- .++.|++|.||+....++.++...-.+
T Consensus 82 ~~DaLk~d~----------------------~~l~~~~~vVaNlPY~Isspii~kll~~~~~ 121 (259)
T COG0030 82 NGDALKFDF----------------------PSLAQPYKVVANLPYNISSPILFKLLEEKFI 121 (259)
T ss_pred eCchhcCcc----------------------hhhcCCCEEEEcCCCcccHHHHHHHHhccCc
Confidence 999877642 111 679999999999877776665554333
No 202
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.67 E-value=4.7e-07 Score=72.53 Aligned_cols=133 Identities=17% Similarity=0.195 Sum_probs=93.9
Q ss_pred HHHHHHhh--hcCCCcEEEEccCCCHHHHHHHHh--CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccccc
Q 047371 48 CLLLLQSL--IKGGELFLDYGTGSGILGIAAIKF--GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTA 123 (222)
Q Consensus 48 ~~~~l~~~--~~~~~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~ 123 (222)
+.++.+++ ++++..|+|+|+.+|+.+..+++. ....|+|+|+.|- ..+ .++.+...|...-.
T Consensus 33 L~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~-----------~~~--~~V~~iq~d~~~~~- 98 (205)
T COG0293 33 LLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM-----------KPI--PGVIFLQGDITDED- 98 (205)
T ss_pred HHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc-----------ccC--CCceEEeeeccCcc-
Confidence 44444444 778999999999999999998875 2345999999872 122 24667777664431
Q ss_pred ccccccccchhccccccccCCCCCCCeeEEEecccc--------ccH------HHHHHHHHHcccCCeEEEEecCCCCcH
Q 047371 124 SMNERVDGVVEYLSSHEIRGISETEEYDVVIANILL--------NPL------PQLADHIVSYAKPGAVVGISGILSEQL 189 (222)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~--------~~~------~~~l~~~~~~LkpgG~l~~~~~~~~~~ 189 (222)
....+ .......++|+|++++.- ++. ...++-+...|+|||.+++..+.....
T Consensus 99 ----~~~~l---------~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~ 165 (205)
T COG0293 99 ----TLEKL---------LEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDF 165 (205)
T ss_pred ----HHHHH---------HHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCH
Confidence 11111 112245568999987643 222 124677788999999999999999999
Q ss_pred HHHHHHHHhhhhcceecc
Q 047371 190 PRIINRYSEFLEDILVSE 207 (222)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~ 207 (222)
.++...+..+|..+....
T Consensus 166 ~~~l~~~~~~F~~v~~~K 183 (205)
T COG0293 166 EDLLKALRRLFRKVKIFK 183 (205)
T ss_pred HHHHHHHHHhhceeEEec
Confidence 999999999987777654
No 203
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.67 E-value=5.1e-08 Score=75.65 Aligned_cols=113 Identities=19% Similarity=0.171 Sum_probs=69.6
Q ss_pred CcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccccc
Q 047371 60 ELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSH 139 (222)
Q Consensus 60 ~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (222)
..|+|++||.|..++.+|+. ..+|+++|+++..++.|+.|+...|+. +++.+..+|......
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~-~~~Viaidid~~~~~~a~hNa~vYGv~-~~I~~i~gD~~~~~~---------------- 62 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFART-FDRVIAIDIDPERLECAKHNAEVYGVA-DNIDFICGDFFELLK---------------- 62 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHT-T-EEEEEES-HHHHHHHHHHHHHTT-G-GGEEEEES-HHHHGG----------------
T ss_pred CEEEEeccCcCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEeCCHHHHHh----------------
Confidence 36999999999999999988 478999999999999999999999986 689999998755421
Q ss_pred cccCCCCCCCeeEEEecccccc-------------------HHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHH
Q 047371 140 EIRGISETEEYDVVIANILLNP-------------------LPQLADHIVSYAKPGAVVGISGILSEQLPRIINRY 196 (222)
Q Consensus 140 ~~~~~~~~~~~D~v~~~~~~~~-------------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~ 196 (222)
.......+|+|+++||... ..++++.+.++ .+. +++.=..+.+..++.+..
T Consensus 63 ---~~~~~~~~D~vFlSPPWGGp~Y~~~~~fdL~~~~~p~~~~~l~~~~~~~-t~n--v~l~LPRn~dl~ql~~~~ 132 (163)
T PF09445_consen 63 ---RLKSNKIFDVVFLSPPWGGPSYSKKDVFDLEKSMQPFNLEDLLKAARKI-TPN--VVLFLPRNSDLNQLSQLT 132 (163)
T ss_dssp ---GB------SEEEE---BSSGGGGGSSSB-TTTSSSS--HHHHHHHHHHH--S---EEEEEETTB-HHHHHHT-
T ss_pred ---hccccccccEEEECCCCCCccccccCccCHHHccCCCCHHHHHHHHHhh-CCC--EEEEeCCCCCHHHHHHHh
Confidence 0001122899999998532 23344544433 333 223224666777776654
No 204
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.64 E-value=2.7e-07 Score=76.15 Aligned_cols=89 Identities=15% Similarity=0.169 Sum_probs=66.6
Q ss_pred CCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcccc
Q 047371 59 GELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSS 138 (222)
Q Consensus 59 ~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (222)
..++||+|+|.|.++..++.. ..+|+++|.|+.|....++ .|.. .. +...+..
T Consensus 95 ~~~lLDlGAGdG~VT~~l~~~-f~~v~aTE~S~~Mr~rL~~----kg~~-----vl--~~~~w~~--------------- 147 (265)
T PF05219_consen 95 DKSLLDLGAGDGEVTERLAPL-FKEVYATEASPPMRWRLSK----KGFT-----VL--DIDDWQQ--------------- 147 (265)
T ss_pred CCceEEecCCCcHHHHHHHhh-cceEEeecCCHHHHHHHHh----CCCe-----EE--ehhhhhc---------------
Confidence 468999999999999999876 5789999999998665544 3432 22 2222210
Q ss_pred ccccCCCCCCCeeEEEecccccc---HHHHHHHHHHcccCCeEEEE
Q 047371 139 HEIRGISETEEYDVVIANILLNP---LPQLADHIVSYAKPGAVVGI 181 (222)
Q Consensus 139 ~~~~~~~~~~~~D~v~~~~~~~~---~~~~l~~~~~~LkpgG~l~~ 181 (222)
...+||+|.|-..++- ...+++.+++.|+|+|++++
T Consensus 148 -------~~~~fDvIscLNvLDRc~~P~~LL~~i~~~l~p~G~lil 186 (265)
T PF05219_consen 148 -------TDFKFDVISCLNVLDRCDRPLTLLRDIRRALKPNGRLIL 186 (265)
T ss_pred -------cCCceEEEeehhhhhccCCHHHHHHHHHHHhCCCCEEEE
Confidence 3457999999666543 55689999999999999988
No 205
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.63 E-value=1.9e-07 Score=72.47 Aligned_cols=80 Identities=19% Similarity=0.180 Sum_probs=62.0
Q ss_pred EEEeCChHHHHHHHHHHHhcCCC-CCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc--
Q 047371 85 VGVDIDPQVIKSAHQNAALNNIG-PKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP-- 161 (222)
Q Consensus 85 ~gvD~s~~~l~~a~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~-- 161 (222)
+|+|+|+.|++.|+++....... ..++++...|...++. ++++||+|++...+++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~----------------------~~~~fD~v~~~~~l~~~~ 58 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPF----------------------DDCEFDAVTMGYGLRNVV 58 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCC----------------------CCCCeeEEEecchhhcCC
Confidence 48999999999998766432211 1368899888876643 6778999999887765
Q ss_pred -HHHHHHHHHHcccCCeEEEEecCCC
Q 047371 162 -LPQLADHIVSYAKPGAVVGISGILS 186 (222)
Q Consensus 162 -~~~~l~~~~~~LkpgG~l~~~~~~~ 186 (222)
....+++++++|||||.+++.++..
T Consensus 59 d~~~~l~ei~rvLkpGG~l~i~d~~~ 84 (160)
T PLN02232 59 DRLRAMKEMYRVLKPGSRVSILDFNK 84 (160)
T ss_pred CHHHHHHHHHHHcCcCeEEEEEECCC
Confidence 5568999999999999999876643
No 206
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.63 E-value=7.7e-07 Score=71.99 Aligned_cols=108 Identities=15% Similarity=0.210 Sum_probs=85.6
Q ss_pred CCCcEEEEccCCCHHHHHHHHh--CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371 58 GGELFLDYGTGSGILGIAAIKF--GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY 135 (222)
Q Consensus 58 ~~~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 135 (222)
.+++.||+|.=+|..++.+|.. ..++|+++|+++...+.+....+..+.. +.+++..+++...- .++
T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~-~KI~~i~g~a~esL-------d~l--- 141 (237)
T KOG1663|consen 73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVD-HKITFIEGPALESL-------DEL--- 141 (237)
T ss_pred CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhcccc-ceeeeeecchhhhH-------HHH---
Confidence 5889999999999888876653 4589999999999999999888888887 68888888764321 111
Q ss_pred cccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEe
Q 047371 136 LSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGIS 182 (222)
Q Consensus 136 ~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 182 (222)
.+-.+.+.||++|.+.--..+..+.+++.+++|+||++++.
T Consensus 142 ------~~~~~~~tfDfaFvDadK~nY~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 142 ------LADGESGTFDFAFVDADKDNYSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred ------HhcCCCCceeEEEEccchHHHHHHHHHHHhhcccccEEEEe
Confidence 11015678999998776666778999999999999999984
No 207
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.63 E-value=4e-07 Score=83.47 Aligned_cols=66 Identities=20% Similarity=0.091 Sum_probs=47.9
Q ss_pred CCcchhHHHHHHHHhhh-c--------CCCcEEEEccCCCHHHHHHHHh-C--------CCEEEEEeCChHHHHHHHHHH
Q 047371 40 GEHATTKLCLLLLQSLI-K--------GGELFLDYGTGSGILGIAAIKF-G--------AAMFVGVDIDPQVIKSAHQNA 101 (222)
Q Consensus 40 ~~~~~~~~~~~~l~~~~-~--------~~~~vLD~G~G~G~~~~~la~~-~--------~~~v~gvD~s~~~l~~a~~~~ 101 (222)
|.+.|+..+.+.+...+ + ...+|||.|||+|.+...++.. . ..+++|+|+++.++..++.++
T Consensus 4 GqfyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l 83 (524)
T TIGR02987 4 GTFFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLL 83 (524)
T ss_pred cccCCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHH
Confidence 45555665655555432 1 2358999999999998877642 1 157899999999999999988
Q ss_pred HhcC
Q 047371 102 ALNN 105 (222)
Q Consensus 102 ~~~~ 105 (222)
...+
T Consensus 84 ~~~~ 87 (524)
T TIGR02987 84 GEFA 87 (524)
T ss_pred hhcC
Confidence 6554
No 208
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.62 E-value=5.2e-07 Score=85.42 Aligned_cols=105 Identities=26% Similarity=0.264 Sum_probs=75.3
Q ss_pred cCCCcEEEEccCCCHHHHHHHHh-------------------------------------------CCCEEEEEeCChHH
Q 047371 57 KGGELFLDYGTGSGILGIAAIKF-------------------------------------------GAAMFVGVDIDPQV 93 (222)
Q Consensus 57 ~~~~~vLD~G~G~G~~~~~la~~-------------------------------------------~~~~v~gvD~s~~~ 93 (222)
+++..++|.+||+|.+.+.++.. ...+++|+|+++.+
T Consensus 189 ~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~a 268 (702)
T PRK11783 189 QEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRV 268 (702)
T ss_pred CCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHH
Confidence 46789999999999999877641 01269999999999
Q ss_pred HHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc-------HHHHH
Q 047371 94 IKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP-------LPQLA 166 (222)
Q Consensus 94 l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~-------~~~~l 166 (222)
++.|+.|+..+++. +.+.+...|...+.. . ...+++|+|++|||+.. ...+.
T Consensus 269 v~~A~~N~~~~g~~-~~i~~~~~D~~~~~~-------~-------------~~~~~~d~IvtNPPYg~r~~~~~~l~~lY 327 (702)
T PRK11783 269 IQAARKNARRAGVA-ELITFEVKDVADLKN-------P-------------LPKGPTGLVISNPPYGERLGEEPALIALY 327 (702)
T ss_pred HHHHHHHHHHcCCC-cceEEEeCChhhccc-------c-------------cccCCCCEEEECCCCcCccCchHHHHHHH
Confidence 99999999999986 468888887755421 0 02346999999999853 12233
Q ss_pred HHHHHcc---cCCeEEEEe
Q 047371 167 DHIVSYA---KPGAVVGIS 182 (222)
Q Consensus 167 ~~~~~~L---kpgG~l~~~ 182 (222)
..+.+.+ .+|+.+++.
T Consensus 328 ~~lg~~lk~~~~g~~~~ll 346 (702)
T PRK11783 328 SQLGRRLKQQFGGWNAALF 346 (702)
T ss_pred HHHHHHHHHhCCCCeEEEE
Confidence 3333333 388887763
No 209
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.61 E-value=3.2e-07 Score=72.47 Aligned_cols=135 Identities=16% Similarity=0.227 Sum_probs=79.4
Q ss_pred HHHHHHhh--hcC--CCcEEEEccCCCHHHHHHHHhC--CCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccc
Q 047371 48 CLLLLQSL--IKG--GELFLDYGTGSGILGIAAIKFG--AAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTF 121 (222)
Q Consensus 48 ~~~~l~~~--~~~--~~~vLD~G~G~G~~~~~la~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~ 121 (222)
+.+++.++ +++ +.++||+||++|.++..+.+.. ..+++|+|+.+. .... ++.....|....
T Consensus 9 L~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~~--~~~~i~~d~~~~ 75 (181)
T PF01728_consen 9 LYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPLQ--NVSFIQGDITNP 75 (181)
T ss_dssp HHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS-T--TEEBTTGGGEEE
T ss_pred HHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------cccc--ceeeeecccchh
Confidence 45555554 344 4899999999999999999875 689999999885 1111 333433333221
Q ss_pred ccccccccccchhccccccccCCCCCCCeeEEEecccccc--------------HHHHHHHHHHcccCCeEEEEecCCCC
Q 047371 122 TASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP--------------LPQLADHIVSYAKPGAVVGISGILSE 187 (222)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~--------------~~~~l~~~~~~LkpgG~l~~~~~~~~ 187 (222)
.. ........ . ...+++|+|+++..... ....+..+...|+|||.+++..+...
T Consensus 76 ~~--~~~i~~~~--------~--~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~ 143 (181)
T PF01728_consen 76 EN--IKDIRKLL--------P--ESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGP 143 (181)
T ss_dssp EH--SHHGGGSH--------G--TTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSST
T ss_pred hH--HHhhhhhc--------c--ccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCc
Confidence 00 00111110 0 02368999999873211 11235566778999999888656544
Q ss_pred cHHHHHHHHHhhhhcceecc
Q 047371 188 QLPRIINRYSEFLEDILVSE 207 (222)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~ 207 (222)
...++...+...|..+....
T Consensus 144 ~~~~~~~~l~~~F~~v~~~K 163 (181)
T PF01728_consen 144 EIEELIYLLKRCFSKVKIVK 163 (181)
T ss_dssp TSHHHHHHHHHHHHHEEEEE
T ss_pred cHHHHHHHHHhCCeEEEEEE
Confidence 44588888888876665443
No 210
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.59 E-value=5.4e-07 Score=74.37 Aligned_cols=94 Identities=21% Similarity=0.279 Sum_probs=72.8
Q ss_pred cCCCcEEEEccCCCHHHHHHHH-hCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371 57 KGGELFLDYGTGSGILGIAAIK-FGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY 135 (222)
Q Consensus 57 ~~~~~vLD~G~G~G~~~~~la~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 135 (222)
.+..+|+|+|+|.|.++..+++ ++..+++..|+ |.+++.+++ .+++++..+|.-.. +
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~--------~~rv~~~~gd~f~~----------~--- 156 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE--------ADRVEFVPGDFFDP----------L--- 156 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH--------TTTEEEEES-TTTC----------C---
T ss_pred cCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc--------ccccccccccHHhh----------h---
Confidence 4567899999999999998776 57789999999 888888887 25899988876411 0
Q ss_pred cccccccCCCCCCCeeEEEeccccccH-----HHHHHHHHHcccCC--eEEEEecC
Q 047371 136 LSSHEIRGISETEEYDVVIANILLNPL-----PQLADHIVSYAKPG--AVVGISGI 184 (222)
Q Consensus 136 ~~~~~~~~~~~~~~~D~v~~~~~~~~~-----~~~l~~~~~~Lkpg--G~l~~~~~ 184 (222)
+. +|++++...+|.. ..+|+++++.|+|| |.|++.+.
T Consensus 157 ----------P~--~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~ 200 (241)
T PF00891_consen 157 ----------PV--ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEM 200 (241)
T ss_dssp ----------SS--ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEE
T ss_pred ----------cc--ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEee
Confidence 33 9999998888763 35899999999999 99998644
No 211
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.54 E-value=4.7e-06 Score=69.82 Aligned_cols=113 Identities=12% Similarity=0.073 Sum_probs=82.4
Q ss_pred CCcEEEEccCCCHHHHHHH-HhC--CCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371 59 GELFLDYGTGSGILGIAAI-KFG--AAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY 135 (222)
Q Consensus 59 ~~~vLD~G~G~G~~~~~la-~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 135 (222)
.-+|+|++||.|...+-+. ..+ ..++...|+++..++..++.++..++. +-++|...|+-... ....
T Consensus 136 pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~-~i~~f~~~dAfd~~-----~l~~---- 205 (311)
T PF12147_consen 136 PVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLE-DIARFEQGDAFDRD-----SLAA---- 205 (311)
T ss_pred ceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCc-cceEEEecCCCCHh-----Hhhc----
Confidence 4589999999998776544 444 368999999999999999999999997 24488888763321 1111
Q ss_pred cccccccCCCCCCCeeEEEecccccc------HHHHHHHHHHcccCCeEEEEecCCCCcHHH
Q 047371 136 LSSHEIRGISETEEYDVVIANILLNP------LPQLADHIVSYAKPGAVVGISGILSEQLPR 191 (222)
Q Consensus 136 ~~~~~~~~~~~~~~~D~v~~~~~~~~------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~ 191 (222)
-....+++++...++. ....+..+.+++.|||+++.++-+.+...+
T Consensus 206 ----------l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle 257 (311)
T PF12147_consen 206 ----------LDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLE 257 (311)
T ss_pred ----------cCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchH
Confidence 1334689998877654 334688999999999999997654433333
No 212
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.51 E-value=2e-06 Score=72.11 Aligned_cols=118 Identities=16% Similarity=0.234 Sum_probs=83.5
Q ss_pred CcccccCCcchhHHHHHHHHhh-hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCcee
Q 047371 34 GLAFGTGEHATTKLCLLLLQSL-IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIK 112 (222)
Q Consensus 34 ~~~f~~~~~~~~~~~~~~l~~~-~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~ 112 (222)
...+|+..-.....+..++... ..+++.|+|+|+|.|.++..+.+.+ .+++++|.++..++..++... ..++++
T Consensus 5 kk~~gQnFL~~~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~----~~~~~~ 79 (262)
T PF00398_consen 5 KKSLGQNFLVDPNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFA----SNPNVE 79 (262)
T ss_dssp -CGCTSSEEEHHHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCT----TCSSEE
T ss_pred CCCCCcCeeCCHHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhh----hcccce
Confidence 3445554333444444554444 3478999999999999999999887 899999999999998888654 225889
Q ss_pred EEecCCcccccccccccccchhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccC
Q 047371 113 LHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKP 175 (222)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~Lkp 175 (222)
+...|+..+... . . ..+....+++|.|++....++.++...-+.
T Consensus 80 vi~~D~l~~~~~--~---~--------------~~~~~~~vv~NlPy~is~~il~~ll~~~~~ 123 (262)
T PF00398_consen 80 VINGDFLKWDLY--D---L--------------LKNQPLLVVGNLPYNISSPILRKLLELYRF 123 (262)
T ss_dssp EEES-TTTSCGG--G---H--------------CSSSEEEEEEEETGTGHHHHHHHHHHHGGG
T ss_pred eeecchhccccH--H---h--------------hcCCceEEEEEecccchHHHHHHHhhcccc
Confidence 999988765320 0 0 124568899999998777888777775454
No 213
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.51 E-value=2.4e-06 Score=67.80 Aligned_cols=96 Identities=20% Similarity=0.189 Sum_probs=78.6
Q ss_pred cEEEEccCCCHHHHHHHH-hCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccccc
Q 047371 61 LFLDYGTGSGILGIAAIK-FGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSH 139 (222)
Q Consensus 61 ~vLD~G~G~G~~~~~la~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (222)
+++|+|+|.|.-++.++= .+..+++.+|.....+.-.+......+++ |+++....++...
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~--nv~v~~~R~E~~~----------------- 111 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLS--NVEVINGRAEEPE----------------- 111 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-S--SEEEEES-HHHTT-----------------
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCC--CEEEEEeeecccc-----------------
Confidence 899999999998887764 46788999999999999988888888886 8999888776511
Q ss_pred cccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEe
Q 047371 140 EIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGIS 182 (222)
Q Consensus 140 ~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 182 (222)
...+||+|++...- .+..++..+...+++||.+++.
T Consensus 112 ------~~~~fd~v~aRAv~-~l~~l~~~~~~~l~~~G~~l~~ 147 (184)
T PF02527_consen 112 ------YRESFDVVTARAVA-PLDKLLELARPLLKPGGRLLAY 147 (184)
T ss_dssp ------TTT-EEEEEEESSS-SHHHHHHHHGGGEEEEEEEEEE
T ss_pred ------cCCCccEEEeehhc-CHHHHHHHHHHhcCCCCEEEEE
Confidence 57789999998754 4788999999999999998885
No 214
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.50 E-value=3.3e-07 Score=74.14 Aligned_cols=115 Identities=16% Similarity=0.115 Sum_probs=89.9
Q ss_pred cCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcc
Q 047371 57 KGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYL 136 (222)
Q Consensus 57 ~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (222)
+....++|+|||-|.+..++...+-.+++-+|.|..|++.++.. ..+.+ .+.....|-+.+.+
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~-qdp~i---~~~~~v~DEE~Ldf------------- 133 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDA-QDPSI---ETSYFVGDEEFLDF------------- 133 (325)
T ss_pred hhCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhcc-CCCce---EEEEEecchhcccc-------------
Confidence 34578999999999999999888788999999999999998764 22333 23344455444433
Q ss_pred ccccccCCCCCCCeeEEEeccccccH---HHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHH
Q 047371 137 SSHEIRGISETEEYDVVIANILLNPL---PQLADHIVSYAKPGAVVGISGILSEQLPRIINRYS 197 (222)
Q Consensus 137 ~~~~~~~~~~~~~~D~v~~~~~~~~~---~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~ 197 (222)
..+++|+|++...+|+. +.-+.++...|||+|.++-+-+..+...+++-.++
T Consensus 134 ---------~ens~DLiisSlslHW~NdLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~slq 188 (325)
T KOG2940|consen 134 ---------KENSVDLIISSLSLHWTNDLPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQ 188 (325)
T ss_pred ---------cccchhhhhhhhhhhhhccCchHHHHHHHhcCCCccchhHHhccccHHHHHHHhh
Confidence 78899999999988875 44688899999999999988788888887776654
No 215
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=98.46 E-value=1.2e-06 Score=77.08 Aligned_cols=133 Identities=23% Similarity=0.346 Sum_probs=89.7
Q ss_pred cceeEEeCCCcccccCCcchhHHHHHHHHhh---hcCCCcEEEEccCCCHHHHHHHHh--CCCEEEEEeCChHHHHHHHH
Q 047371 25 QATNIILNPGLAFGTGEHATTKLCLLLLQSL---IKGGELFLDYGTGSGILGIAAIKF--GAAMFVGVDIDPQVIKSAHQ 99 (222)
Q Consensus 25 ~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~---~~~~~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~s~~~l~~a~~ 99 (222)
.....+.||.+.| +...+-++..++..+ ...+.++||.-+|+|.-++..+.. +..+|++.|+|+.+++..++
T Consensus 16 ~~~~vFYNP~~~~---nRDlsvl~~~~~~~~~~~~~~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~ 92 (377)
T PF02005_consen 16 KKAPVFYNPVMEF---NRDLSVLAIRYLAVLKEKRKGPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKR 92 (377)
T ss_dssp TTSSSS--GGGHH---HHHHHHHH---HHHHHHCH-S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHH
T ss_pred CCCCcccCcchhc---ccceeehhHHHHHHhhhhhcCCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHH
Confidence 3456788888877 444444442222222 234568999999999988876654 55789999999999999999
Q ss_pred HHHhcCCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEE
Q 047371 100 NAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVV 179 (222)
Q Consensus 100 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l 179 (222)
|+..+++..+.+.+...|+..++. .....||+|=.+| +.....+++.+.+.++.||.+
T Consensus 93 N~~~N~~~~~~~~v~~~DAn~ll~---------------------~~~~~fD~IDlDP-fGSp~pfldsA~~~v~~gGll 150 (377)
T PF02005_consen 93 NLELNGLEDERIEVSNMDANVLLY---------------------SRQERFDVIDLDP-FGSPAPFLDSALQAVKDGGLL 150 (377)
T ss_dssp HHHHCT-SGCCEEEEES-HHHHHC---------------------HSTT-EEEEEE---SS--HHHHHHHHHHEEEEEEE
T ss_pred hHhhccccCceEEEehhhHHHHhh---------------------hccccCCEEEeCC-CCCccHhHHHHHHHhhcCCEE
Confidence 999999984357777777755431 1467899999887 666778999999999999999
Q ss_pred EEe
Q 047371 180 GIS 182 (222)
Q Consensus 180 ~~~ 182 (222)
+++
T Consensus 151 ~vT 153 (377)
T PF02005_consen 151 CVT 153 (377)
T ss_dssp EEE
T ss_pred EEe
Confidence 994
No 216
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.43 E-value=1.9e-06 Score=70.11 Aligned_cols=143 Identities=17% Similarity=0.164 Sum_probs=93.9
Q ss_pred eEeccceeeeecCCCCCCCcceeEEeC-CCcccccCCcchhHHHHHHHHhh--hcCCCcEEEEccCCCHHHHHHHHhCCC
Q 047371 6 VEVTKGLWIVPEWSTPPDVQATNIILN-PGLAFGTGEHATTKLCLLLLQSL--IKGGELFLDYGTGSGILGIAAIKFGAA 82 (222)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~f~~~~~~~~~~~~~~l~~~--~~~~~~vLD~G~G~G~~~~~la~~~~~ 82 (222)
|.++.+...+|+ .... ....+.+. +...|.+. ....+...+..+ ..++..+||+|+.||.++..+.+.++.
T Consensus 30 V~Vng~~v~KP~-~~V~--~~~~i~v~~~~~~yVSR---G~~KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk 103 (245)
T COG1189 30 VLVNGEKVTKPS-QLVD--IDDEIEVKGEEQPYVSR---GGLKLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAK 103 (245)
T ss_pred EEECCEEecCcc-eecC--CCceEEEcccCcCcccc---HHHHHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCc
Confidence 566666667776 3322 22334444 44454222 223334444444 457899999999999999999999999
Q ss_pred EEEEEeCChHHHHHHHHHHHhcCCCCCcee-EEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc
Q 047371 83 MFVGVDIDPQVIKSAHQNAALNNIGPKKIK-LHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP 161 (222)
Q Consensus 83 ~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~ 161 (222)
+|+|+|..-.++..--++- .++. +...++..+.. .. -.+..|+++++..+-.
T Consensus 104 ~VyavDVG~~Ql~~kLR~d-------~rV~~~E~tN~r~l~~------~~--------------~~~~~d~~v~DvSFIS 156 (245)
T COG1189 104 HVYAVDVGYGQLHWKLRND-------PRVIVLERTNVRYLTP------ED--------------FTEKPDLIVIDVSFIS 156 (245)
T ss_pred EEEEEEccCCccCHhHhcC-------CcEEEEecCChhhCCH------HH--------------cccCCCeEEEEeehhh
Confidence 9999999887766543321 1322 22333322211 00 1336899999999999
Q ss_pred HHHHHHHHHHcccCCeEEEE
Q 047371 162 LPQLADHIVSYAKPGAVVGI 181 (222)
Q Consensus 162 ~~~~l~~~~~~LkpgG~l~~ 181 (222)
+..++..+..++++++.++.
T Consensus 157 L~~iLp~l~~l~~~~~~~v~ 176 (245)
T COG1189 157 LKLILPALLLLLKDGGDLVL 176 (245)
T ss_pred HHHHHHHHHHhcCCCceEEE
Confidence 99999999999999998876
No 217
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=98.41 E-value=5.7e-06 Score=72.28 Aligned_cols=120 Identities=16% Similarity=0.132 Sum_probs=88.4
Q ss_pred hcCCCcEEEEccCCCHHHHHHHHh--CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371 56 IKGGELFLDYGTGSGILGIAAIKF--GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV 133 (222)
Q Consensus 56 ~~~~~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 133 (222)
.++|.+|||+++.+|.-+.++|.. ..+.|+|.|.+...+...+.++.+.|+. +......|...++. +.
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~--ntiv~n~D~~ef~~-------~~- 308 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVT--NTIVSNYDGREFPE-------KE- 308 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCC--ceEEEccCcccccc-------cc-
Confidence 458999999999999988877753 4578999999999999999999999986 55555566544421 00
Q ss_pred hccccccccCCCCCCCeeEEEecccccc-------------------------HHHHHHHHHHcccCCeEEEEecC--CC
Q 047371 134 EYLSSHEIRGISETEEYDVVIANILLNP-------------------------LPQLADHIVSYAKPGAVVGISGI--LS 186 (222)
Q Consensus 134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~-------------------------~~~~l~~~~~~LkpgG~l~~~~~--~~ 186 (222)
..++||-|+.+.|+.. ..+++..+..++++||+++.++. ..
T Consensus 309 ------------~~~~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~ 376 (460)
T KOG1122|consen 309 ------------FPGSFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITV 376 (460)
T ss_pred ------------cCcccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecch
Confidence 1227999998877543 34588999999999999998643 34
Q ss_pred CcHHHHHHHHH
Q 047371 187 EQLPRIINRYS 197 (222)
Q Consensus 187 ~~~~~~~~~~~ 197 (222)
+..+.+++..-
T Consensus 377 ~ENE~vV~yaL 387 (460)
T KOG1122|consen 377 EENEAVVDYAL 387 (460)
T ss_pred hhhHHHHHHHH
Confidence 44444444443
No 218
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.38 E-value=5.7e-06 Score=66.79 Aligned_cols=121 Identities=21% Similarity=0.200 Sum_probs=67.1
Q ss_pred hhHHHHHHHHhh-hcCCCcEEEEccCCCHHHHHHH-HhCCCEEEEEeCChHHHHHHHHHH-------HhcCCCCCceeEE
Q 047371 44 TTKLCLLLLQSL-IKGGELFLDYGTGSGILGIAAI-KFGAAMFVGVDIDPQVIKSAHQNA-------ALNNIGPKKIKLH 114 (222)
Q Consensus 44 ~~~~~~~~l~~~-~~~~~~vLD~G~G~G~~~~~la-~~~~~~v~gvD~s~~~l~~a~~~~-------~~~~~~~~~v~~~ 114 (222)
....+..+++.. +.+++.++|+|||.|.....++ ..+..+.+|+|+.+...+.|+... ...+.....+.+.
T Consensus 27 ~~~~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~ 106 (205)
T PF08123_consen 27 SPEFVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELI 106 (205)
T ss_dssp HHHHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEE
T ss_pred CHHHHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceee
Confidence 444555566554 6788999999999999877655 457777999999999887775433 2344443456666
Q ss_pred ecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc--HHHHHHHHHHcccCCeEEEEec
Q 047371 115 LVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP--LPQLADHIVSYAKPGAVVGISG 183 (222)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~ 183 (222)
.+|...... ... .-...|+|++|..... +..-+......||+|.+++...
T Consensus 107 ~gdfl~~~~------~~~-------------~~s~AdvVf~Nn~~F~~~l~~~L~~~~~~lk~G~~IIs~~ 158 (205)
T PF08123_consen 107 HGDFLDPDF------VKD-------------IWSDADVVFVNNTCFDPDLNLALAELLLELKPGARIISTK 158 (205)
T ss_dssp CS-TTTHHH------HHH-------------HGHC-SEEEE--TTT-HHHHHHHHHHHTTS-TT-EEEESS
T ss_pred ccCccccHh------Hhh-------------hhcCCCEEEEeccccCHHHHHHHHHHHhcCCCCCEEEECC
Confidence 655433210 000 0134799999765432 3344567777899998887643
No 219
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.38 E-value=4.3e-06 Score=67.02 Aligned_cols=130 Identities=16% Similarity=0.202 Sum_probs=73.1
Q ss_pred HHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccc
Q 047371 47 LCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMN 126 (222)
Q Consensus 47 ~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 126 (222)
.+.+++.+. +++..|.|+|||.+.++..+. . .-.|...|+-+. + +. +..+|....+.
T Consensus 62 ~iI~~l~~~-~~~~viaD~GCGdA~la~~~~-~-~~~V~SfDLva~-----------n----~~--Vtacdia~vPL--- 118 (219)
T PF05148_consen 62 VIIEWLKKR-PKSLVIADFGCGDAKLAKAVP-N-KHKVHSFDLVAP-----------N----PR--VTACDIANVPL--- 118 (219)
T ss_dssp HHHHHHCTS--TTS-EEEES-TT-HHHHH---S----EEEEESS-S-----------S----TT--EEES-TTS-S----
T ss_pred HHHHHHHhc-CCCEEEEECCCchHHHHHhcc-c-CceEEEeeccCC-----------C----CC--EEEecCccCcC---
Confidence 344444432 446799999999999996543 2 236899998541 1 13 44455544432
Q ss_pred cccccchhccccccccCCCCCCCeeEEEecccc--ccHHHHHHHHHHcccCCeEEEEecCC--CCcHHHHHHHHHhh-hh
Q 047371 127 ERVDGVVEYLSSHEIRGISETEEYDVVIANILL--NPLPQLADHIVSYAKPGAVVGISGIL--SEQLPRIINRYSEF-LE 201 (222)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~--~~~~~~~~~~~~~~-~~ 201 (222)
+++.+|++++...+ ..+.+++.++.|+|||||.+.|.++. -.+...+.+.++.. |.
T Consensus 119 -------------------~~~svDv~VfcLSLMGTn~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~ 179 (219)
T PF05148_consen 119 -------------------EDESVDVAVFCLSLMGTNWPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFK 179 (219)
T ss_dssp --------------------TT-EEEEEEES---SS-HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEE
T ss_pred -------------------CCCceeEEEEEhhhhCCCcHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCe
Confidence 68899999986554 44789999999999999999997653 35566777776664 55
Q ss_pred cceec-ccCCceEeeccc
Q 047371 202 DILVS-EKDDWRCVSGTK 218 (222)
Q Consensus 202 ~~~~~-~~~~w~~~~~~k 218 (222)
..... .......+..+|
T Consensus 180 ~~~~d~~n~~F~~f~F~K 197 (219)
T PF05148_consen 180 LKSKDESNKHFVLFEFKK 197 (219)
T ss_dssp EEEEE--STTEEEEEEEE
T ss_pred EEecccCCCeEEEEEEEE
Confidence 54433 233334444333
No 220
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=98.38 E-value=6.1e-06 Score=64.82 Aligned_cols=125 Identities=14% Similarity=0.108 Sum_probs=85.3
Q ss_pred hcCCCcEEEEccCCCHHHHHHHHh--CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEec-CCcccccccccccccc
Q 047371 56 IKGGELFLDYGTGSGILGIAAIKF--GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLV-PDRTFTASMNERVDGV 132 (222)
Q Consensus 56 ~~~~~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~~ 132 (222)
+.|+++|||+||.+|..+..+.+. +.+.|.|+|+-+ + .+. +.+++..+ |.....
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh---------~--~p~--~Ga~~i~~~dvtdp~---------- 123 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH---------I--EPP--EGATIIQGNDVTDPE---------- 123 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee---------c--cCC--CCcccccccccCCHH----------
Confidence 678999999999999999988864 678899999854 1 122 13333333 332221
Q ss_pred hhccccccccCCCCCCCeeEEEeccccc--------c-----HH-HHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHh
Q 047371 133 VEYLSSHEIRGISETEEYDVVIANILLN--------P-----LP-QLADHIVSYAKPGAVVGISGILSEQLPRIINRYSE 198 (222)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~D~v~~~~~~~--------~-----~~-~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~ 198 (222)
...++++..++.++|+|++++.-. | ++ ..+--+...++|+|.+++..+...+...+...+..
T Consensus 124 ----~~~ki~e~lp~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e~~~l~r~l~~ 199 (232)
T KOG4589|consen 124 ----TYRKIFEALPNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSEEALLQRRLQA 199 (232)
T ss_pred ----HHHHHHHhCCCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCchHHHHHHHHH
Confidence 111122223778999999976532 1 11 23445566788999999988889999999999999
Q ss_pred hhhcceecc
Q 047371 199 FLEDILVSE 207 (222)
Q Consensus 199 ~~~~~~~~~ 207 (222)
.|..+....
T Consensus 200 ~f~~Vk~vK 208 (232)
T KOG4589|consen 200 VFTNVKKVK 208 (232)
T ss_pred HhhhcEeeC
Confidence 987776543
No 221
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.36 E-value=5.5e-06 Score=63.94 Aligned_cols=117 Identities=14% Similarity=0.212 Sum_probs=81.8
Q ss_pred hhHHHHHHHHhh--hcCCCcEEEEccCCCHHHHHHHHhC--CCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCc
Q 047371 44 TTKLCLLLLQSL--IKGGELFLDYGTGSGILGIAAIKFG--AAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDR 119 (222)
Q Consensus 44 ~~~~~~~~l~~~--~~~~~~vLD~G~G~G~~~~~la~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~ 119 (222)
++....+.+.+. ...|..|||+|.|+|-++..+.+.+ ...++++|.|+.......+... .+++..+|+.
T Consensus 32 sSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p-------~~~ii~gda~ 104 (194)
T COG3963 32 SSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP-------GVNIINGDAF 104 (194)
T ss_pred CcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC-------Cccccccchh
Confidence 333344444433 3457899999999999999988763 5789999999999888877643 3346666654
Q ss_pred ccccccccccccchhccccccccCCCCCCCeeEEEecccccc-----HHHHHHHHHHcccCCeEEEEecC
Q 047371 120 TFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP-----LPQLADHIVSYAKPGAVVGISGI 184 (222)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~ 184 (222)
.+...+.+ .+...||.|+|..|+-. ...+++.+...|.+||.++.-+.
T Consensus 105 ~l~~~l~e-----------------~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftY 157 (194)
T COG3963 105 DLRTTLGE-----------------HKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTY 157 (194)
T ss_pred hHHHHHhh-----------------cCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEe
Confidence 44211111 15667999999766533 34689999999999999987443
No 222
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=98.33 E-value=2.8e-06 Score=72.00 Aligned_cols=86 Identities=29% Similarity=0.405 Sum_probs=49.6
Q ss_pred CCcEEEEccCCCH-HHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhc-CCCCCceeEEecCCcccccccccccccchhcc
Q 047371 59 GELFLDYGTGSGI-LGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALN-NIGPKKIKLHLVPDRTFTASMNERVDGVVEYL 136 (222)
Q Consensus 59 ~~~vLD~G~G~G~-~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (222)
.-++||+|||... +.+..++....+++|+|+++..++.|++++..+ +++ ++|.+......... ..++
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~-~~I~l~~~~~~~~i------~~~i---- 171 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLE-SRIELRKQKNPDNI------FDGI---- 171 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-T-TTEEEEE--ST-SS------TTTS----
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccc-cceEEEEcCCcccc------chhh----
Confidence 3479999999874 455444443589999999999999999999998 887 58888765432111 1111
Q ss_pred ccccccCCCCCCCeeEEEeccccccH
Q 047371 137 SSHEIRGISETEEYDVVIANILLNPL 162 (222)
Q Consensus 137 ~~~~~~~~~~~~~~D~v~~~~~~~~~ 162 (222)
..+.+.||+.+||||++.-
T Consensus 172 -------~~~~e~~dftmCNPPFy~s 190 (299)
T PF05971_consen 172 -------IQPNERFDFTMCNPPFYSS 190 (299)
T ss_dssp -------TT--S-EEEEEE-----SS
T ss_pred -------hcccceeeEEecCCccccC
Confidence 1145689999999999863
No 223
>PRK04148 hypothetical protein; Provisional
Probab=98.33 E-value=1.6e-05 Score=59.68 Aligned_cols=97 Identities=10% Similarity=0.084 Sum_probs=63.7
Q ss_pred CCCcEEEEccCCCH-HHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcc
Q 047371 58 GGELFLDYGTGSGI-LGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYL 136 (222)
Q Consensus 58 ~~~~vLD~G~G~G~-~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (222)
++.+++|+|||+|. ++..|++.+ ..|+|+|+++.+++.++.+ + +.+...|.-....
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~G-~~ViaIDi~~~aV~~a~~~----~-----~~~v~dDlf~p~~------------- 72 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKESG-FDVIVIDINEKAVEKAKKL----G-----LNAFVDDLFNPNL------------- 72 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHCC-CEEEEEECCHHHHHHHHHh----C-----CeEEECcCCCCCH-------------
Confidence 45789999999996 888888876 5899999999998888765 2 2355555433211
Q ss_pred ccccccCCCCCCCeeEEEe-ccccccHHHHHHHHHHcccCCeEEEEecCCCCc
Q 047371 137 SSHEIRGISETEEYDVVIA-NILLNPLPQLADHIVSYAKPGAVVGISGILSEQ 188 (222)
Q Consensus 137 ~~~~~~~~~~~~~~D~v~~-~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 188 (222)
.-.+.+|+|.+ +||.+ +...+-.+++ +-|.-+++..+..+.
T Consensus 73 --------~~y~~a~liysirpp~e-l~~~~~~la~--~~~~~~~i~~l~~e~ 114 (134)
T PRK04148 73 --------EIYKNAKLIYSIRPPRD-LQPFILELAK--KINVPLIIKPLSGEE 114 (134)
T ss_pred --------HHHhcCCEEEEeCCCHH-HHHHHHHHHH--HcCCCEEEEcCCCCC
Confidence 02456899998 45444 3334444444 334456665555444
No 224
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.33 E-value=1.3e-06 Score=68.73 Aligned_cols=96 Identities=22% Similarity=0.345 Sum_probs=77.0
Q ss_pred CCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcccc
Q 047371 59 GELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSS 138 (222)
Q Consensus 59 ~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (222)
.+.+.|+|+|+|.++..+++. ..+|+++|.+|.....|++|+..+|.. ++.++.+|+..+
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~~--n~evv~gDA~~y----------------- 92 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGDV--NWEVVVGDARDY----------------- 92 (252)
T ss_pred hhceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCCc--ceEEEecccccc-----------------
Confidence 478999999999999998887 689999999999999999999878875 899999988766
Q ss_pred ccccCCCCCCCeeEEEecccc-----ccHHHHHHHHHHcccCCeEEEE
Q 047371 139 HEIRGISETEEYDVVIANILL-----NPLPQLADHIVSYAKPGAVVGI 181 (222)
Q Consensus 139 ~~~~~~~~~~~~D~v~~~~~~-----~~~~~~l~~~~~~LkpgG~l~~ 181 (222)
.-...|+|+|.+.= +.....+..+.+.|+-++.++=
T Consensus 93 -------~fe~ADvvicEmlDTaLi~E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 93 -------DFENADVVICEMLDTALIEEKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred -------cccccceeHHHHhhHHhhcccccHHHHHHHHHhhcCCcccc
Confidence 33567999985431 2233467777778888877664
No 225
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.32 E-value=7.1e-06 Score=66.46 Aligned_cols=115 Identities=17% Similarity=0.186 Sum_probs=88.3
Q ss_pred CCcEEEEccCCCHHHHHHH-HhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccc
Q 047371 59 GELFLDYGTGSGILGIAAI-KFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLS 137 (222)
Q Consensus 59 ~~~vLD~G~G~G~~~~~la-~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (222)
+++++|+|+|.|.-++.+| ..+..+++-+|.....+.-.+......+++ |++++...++.+.
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~--nv~i~~~RaE~~~--------------- 130 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLE--NVEIVHGRAEEFG--------------- 130 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCC--CeEEehhhHhhcc---------------
Confidence 5899999999999998877 456677999999999888888888888886 8999998887763
Q ss_pred cccccCCCCCCC-eeEEEeccccccHHHHHHHHHHcccCCeEEEEe--cCCCCcHHHHHHHHHhh
Q 047371 138 SHEIRGISETEE-YDVVIANILLNPLPQLADHIVSYAKPGAVVGIS--GILSEQLPRIINRYSEF 199 (222)
Q Consensus 138 ~~~~~~~~~~~~-~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~--~~~~~~~~~~~~~~~~~ 199 (222)
+... ||+|.+...- .+..+++-+..++|+||.++.. .-..+...+........
T Consensus 131 --------~~~~~~D~vtsRAva-~L~~l~e~~~pllk~~g~~~~~k~~~~~~e~~e~~~a~~~~ 186 (215)
T COG0357 131 --------QEKKQYDVVTSRAVA-SLNVLLELCLPLLKVGGGFLAYKGLAGKDELPEAEKAILPL 186 (215)
T ss_pred --------cccccCcEEEeehcc-chHHHHHHHHHhcccCCcchhhhHHhhhhhHHHHHHHHHhh
Confidence 2233 9999987744 4788899999999999987542 12344445555555444
No 226
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.31 E-value=1.4e-05 Score=64.61 Aligned_cols=129 Identities=19% Similarity=0.197 Sum_probs=87.4
Q ss_pred EEEEccCCCHHHHHHHHhC-CCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcccccc
Q 047371 62 FLDYGTGSGILGIAAIKFG-AAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHE 140 (222)
Q Consensus 62 vLD~G~G~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (222)
|+|+||.-|.+.+.|.+.+ ..+++++|+++..++.|++++...++. +++.+..+|....
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~-~~i~~rlgdGL~~------------------- 60 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLE-DRIEVRLGDGLEV------------------- 60 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-T-TTEEEEE-SGGGG-------------------
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCc-ccEEEEECCcccc-------------------
Confidence 6899999999999999875 456999999999999999999999987 5888888876432
Q ss_pred ccCCCCCCCeeEEEeccc-cccHHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHhh-hhccee---cccCCceEee
Q 047371 141 IRGISETEEYDVVIANIL-LNPLPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSEF-LEDILV---SEKDDWRCVS 215 (222)
Q Consensus 141 ~~~~~~~~~~D~v~~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~w~~~~ 215 (222)
+.+.+..|.|+...+ -.-+.++++.....++....+++. +......+++.+... |..+.. ...+.+-.+.
T Consensus 61 ---l~~~e~~d~ivIAGMGG~lI~~ILe~~~~~~~~~~~lILq--P~~~~~~LR~~L~~~gf~I~~E~lv~e~~~~YeIi 135 (205)
T PF04816_consen 61 ---LKPGEDVDTIVIAGMGGELIIEILEAGPEKLSSAKRLILQ--PNTHAYELRRWLYENGFEIIDEDLVEENGRFYEII 135 (205)
T ss_dssp -----GGG---EEEEEEE-HHHHHHHHHHTGGGGTT--EEEEE--ESS-HHHHHHHHHHTTEEEEEEEEEEETTEEEEEE
T ss_pred ---cCCCCCCCEEEEecCCHHHHHHHHHhhHHHhccCCeEEEe--CCCChHHHHHHHHHCCCEEEEeEEEeECCEEEEEE
Confidence 113333787776543 333667888888877776677774 567788888888776 544432 3344444443
No 227
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=98.30 E-value=2.5e-05 Score=66.60 Aligned_cols=74 Identities=24% Similarity=0.304 Sum_probs=56.0
Q ss_pred hHHHHHHHHhh-hcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccc
Q 047371 45 TKLCLLLLQSL-IKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTF 121 (222)
Q Consensus 45 ~~~~~~~l~~~-~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~ 121 (222)
+-++.+.+..+ .+++..++|.-+|.|..+..+++. +.++|+|+|.++.+++.|++++.... .++.+...+...+
T Consensus 6 pVll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~---~R~~~i~~nF~~l 81 (305)
T TIGR00006 6 SVLLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFE---GRVVLIHDNFANF 81 (305)
T ss_pred chhHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcC---CcEEEEeCCHHHH
Confidence 33444555444 457889999999999999988864 45899999999999999999876432 4777777766544
No 228
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.23 E-value=1.7e-05 Score=65.35 Aligned_cols=107 Identities=14% Similarity=0.208 Sum_probs=72.2
Q ss_pred cCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcc
Q 047371 57 KGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYL 136 (222)
Q Consensus 57 ~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (222)
+....|.|+|||-+.++. +. ..+|+..|+-+ + +-.+..+|....+.
T Consensus 179 ~~~~vIaD~GCGEakiA~---~~-~~kV~SfDL~a--------------~---~~~V~~cDm~~vPl------------- 224 (325)
T KOG3045|consen 179 PKNIVIADFGCGEAKIAS---SE-RHKVHSFDLVA--------------V---NERVIACDMRNVPL------------- 224 (325)
T ss_pred cCceEEEecccchhhhhh---cc-ccceeeeeeec--------------C---CCceeeccccCCcC-------------
Confidence 345689999999998776 22 34688888733 0 22244455544433
Q ss_pred ccccccCCCCCCCeeEEEecccc--ccHHHHHHHHHHcccCCeEEEEecCC--CCcHHHHHHHHHhh-hhcceec
Q 047371 137 SSHEIRGISETEEYDVVIANILL--NPLPQLADHIVSYAKPGAVVGISGIL--SEQLPRIINRYSEF-LEDILVS 206 (222)
Q Consensus 137 ~~~~~~~~~~~~~~D~v~~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~~~--~~~~~~~~~~~~~~-~~~~~~~ 206 (222)
+++++|++++...+ ..+.+++.++.|+||+||.+++.++. -.+...+...+... |+.....
T Consensus 225 ---------~d~svDvaV~CLSLMgtn~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~~d 290 (325)
T KOG3045|consen 225 ---------EDESVDVAVFCLSLMGTNLADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVKHKD 290 (325)
T ss_pred ---------ccCcccEEEeeHhhhcccHHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeeeehh
Confidence 78899999975433 45788999999999999999997653 34445566666554 5444443
No 229
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.21 E-value=2.3e-05 Score=67.67 Aligned_cols=130 Identities=18% Similarity=0.270 Sum_probs=95.7
Q ss_pred CcceeEEeCCCcccccCCcchhHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHH
Q 047371 24 VQATNIILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAA 102 (222)
Q Consensus 24 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~ 102 (222)
...-..+.||.+.| +...+-.....+.+.. ...|+|.-+|+|.-++..+.. +..+++..|+||.+++.+++|+.
T Consensus 23 ~~~~pVFYNP~m~~---NRDlsV~~l~~~~~~~--~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~ 97 (380)
T COG1867 23 SKRAPVFYNPAMEF---NRDLSVLVLKAFGKLL--PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVR 97 (380)
T ss_pred CCCCcceeCchhhh---ccchhHHHHHHhhccC--CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHH
Confidence 33456899999988 4544444444443221 789999999999999977754 54589999999999999999999
Q ss_pred hcCCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEe
Q 047371 103 LNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGIS 182 (222)
Q Consensus 103 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 182 (222)
.|... +......|+..++. . ....||+|=.+| +.....+++.+.+.++.+|++.++
T Consensus 98 ~N~~~--~~~v~n~DAN~lm~-------------------~--~~~~fd~IDiDP-FGSPaPFlDaA~~s~~~~G~l~vT 153 (380)
T COG1867 98 LNSGE--DAEVINKDANALLH-------------------E--LHRAFDVIDIDP-FGSPAPFLDAALRSVRRGGLLCVT 153 (380)
T ss_pred hcCcc--cceeecchHHHHHH-------------------h--cCCCccEEecCC-CCCCchHHHHHHHHhhcCCEEEEE
Confidence 88333 44444456554432 0 246899998777 666778999999999999999984
No 230
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=98.19 E-value=2.5e-05 Score=71.08 Aligned_cols=141 Identities=23% Similarity=0.274 Sum_probs=96.3
Q ss_pred CCcchhHHHHHHHHhhhc--CCCcEEEEccCCCHHHHHHHHh-C----CCEEEEEeCChHHHHHHHHHHHhcCCCCCcee
Q 047371 40 GEHATTKLCLLLLQSLIK--GGELFLDYGTGSGILGIAAIKF-G----AAMFVGVDIDPQVIKSAHQNAALNNIGPKKIK 112 (222)
Q Consensus 40 ~~~~~~~~~~~~l~~~~~--~~~~vLD~G~G~G~~~~~la~~-~----~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~ 112 (222)
|++.|++.+.+++...+. +..+|+|..||+|++.....+. + ...++|.|+++.....|+.++..+++.. .+.
T Consensus 166 GEfyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~-~~~ 244 (489)
T COG0286 166 GEFYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEG-DAN 244 (489)
T ss_pred CccCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCc-ccc
Confidence 778899999999988865 5679999999999887766543 1 3679999999999999999999988863 233
Q ss_pred EEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc----------------------------HHH
Q 047371 113 LHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP----------------------------LPQ 164 (222)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~----------------------------~~~ 164 (222)
....+...-+. ... -...++||.|++|||+.. ...
T Consensus 245 i~~~dtl~~~~-----~~~------------~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 307 (489)
T COG0286 245 IRHGDTLSNPK-----HDD------------KDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLA 307 (489)
T ss_pred ccccccccCCc-----ccc------------cCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHH
Confidence 33333211110 000 003467999999999851 123
Q ss_pred HHHHHHHcccCCeEEEEe---cCC--CCcHHHHHHHHHh
Q 047371 165 LADHIVSYAKPGAVVGIS---GIL--SEQLPRIINRYSE 198 (222)
Q Consensus 165 ~l~~~~~~LkpgG~l~~~---~~~--~~~~~~~~~~~~~ 198 (222)
+++++...|+|||...+. +.. ......+++.+-+
T Consensus 308 f~~h~~~~l~~~g~aaivl~~gvlfr~~~e~~IR~~l~~ 346 (489)
T COG0286 308 FLQHILYKLKPGGRAAIVLPDGVLFRGGAEKDIRKDLLE 346 (489)
T ss_pred HHHHHHHhcCCCceEEEEecCCcCcCCCchHHHHHHHHh
Confidence 689999999998865542 222 2234555555544
No 231
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.18 E-value=2.8e-06 Score=75.83 Aligned_cols=122 Identities=16% Similarity=0.168 Sum_probs=68.6
Q ss_pred ccccCCcchhHHHHHHHHhhhcCCC--cEEEEccCCCHHHHHHHHhCCCEEEEE---eCChHHHHHHHHHHHhcCCCCCc
Q 047371 36 AFGTGEHATTKLCLLLLQSLIKGGE--LFLDYGTGSGILGIAAIKFGAAMFVGV---DIDPQVIKSAHQNAALNNIGPKK 110 (222)
Q Consensus 36 ~f~~~~~~~~~~~~~~l~~~~~~~~--~vLD~G~G~G~~~~~la~~~~~~v~gv---D~s~~~l~~a~~~~~~~~~~~~~ 110 (222)
.|..|-..+.+.+.+++......|. .+||+|||+|+++..|...+- .+..+ |..+.++..|.+ .|+.. -
T Consensus 93 ~F~~Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V-~t~s~a~~d~~~~qvqfale----RGvpa-~ 166 (506)
T PF03141_consen 93 MFPHGADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNV-TTMSFAPNDEHEAQVQFALE----RGVPA-M 166 (506)
T ss_pred cccCCHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCc-eEEEcccccCCchhhhhhhh----cCcch-h
Confidence 3433433444444444432223332 789999999999999887752 22222 333333433332 23320 1
Q ss_pred eeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEeccccc-cH---HHHHHHHHHcccCCeEEEEecCCC
Q 047371 111 IKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLN-PL---PQLADHIVSYAKPGAVVGISGILS 186 (222)
Q Consensus 111 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~-~~---~~~l~~~~~~LkpgG~l~~~~~~~ 186 (222)
+. ......+++ +++.||+|.|.-... +. ..++-++.|+|+|||+++++..+.
T Consensus 167 ~~--~~~s~rLPf----------------------p~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv 222 (506)
T PF03141_consen 167 IG--VLGSQRLPF----------------------PSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPV 222 (506)
T ss_pred hh--hhccccccC----------------------CccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCcc
Confidence 11 111122222 789999999855432 21 236788999999999999986654
Q ss_pred C
Q 047371 187 E 187 (222)
Q Consensus 187 ~ 187 (222)
.
T Consensus 223 ~ 223 (506)
T PF03141_consen 223 Y 223 (506)
T ss_pred c
Confidence 4
No 232
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=98.17 E-value=3.5e-05 Score=58.22 Aligned_cols=108 Identities=15% Similarity=0.238 Sum_probs=69.5
Q ss_pred EEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc-
Q 047371 83 MFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP- 161 (222)
Q Consensus 83 ~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~- 161 (222)
+|+|+|+.+.+++.+++++...++. .++++...+.+.+.. +.+.+++|.++.|..+-+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~-~~v~li~~sHe~l~~--------------------~i~~~~v~~~iFNLGYLPg 59 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLE-DRVTLILDSHENLDE--------------------YIPEGPVDAAIFNLGYLPG 59 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-G-SGEEEEES-GGGGGG--------------------T--S--EEEEEEEESB-CT
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCC-CcEEEEECCHHHHHh--------------------hCccCCcCEEEEECCcCCC
Confidence 5899999999999999999988876 479998887765521 123458999999987643
Q ss_pred -----------HHHHHHHHHHcccCCeEEEEecCCCCcH-HHHHHHHHhhhhcceecccCCceEe
Q 047371 162 -----------LPQLADHIVSYAKPGAVVGISGILSEQL-PRIINRYSEFLEDILVSEKDDWRCV 214 (222)
Q Consensus 162 -----------~~~~l~~~~~~LkpgG~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~w~~~ 214 (222)
....++.+.+.|+|||.+.+........ .+-.+.+..+...+ ....|..+
T Consensus 60 gDk~i~T~~~TTl~Al~~al~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~L---~~~~~~V~ 121 (140)
T PF06962_consen 60 GDKSITTKPETTLKALEAALELLKPGGIITIVVYPGHPGGKEESEAVEEFLASL---DQKEFNVL 121 (140)
T ss_dssp S-TTSB--HHHHHHHHHHHHHHEEEEEEEEEEE--STCHHHHHHHHHHHHHHTS----TTTEEEE
T ss_pred CCCCCCcCcHHHHHHHHHHHHhhccCCEEEEEEeCCCCCCHHHHHHHHHHHHhC---CcceEEEE
Confidence 2346899999999999999875554333 33334444443222 34455543
No 233
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=98.14 E-value=1.2e-05 Score=63.73 Aligned_cols=95 Identities=28% Similarity=0.361 Sum_probs=71.0
Q ss_pred CCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccc
Q 047371 58 GGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLS 137 (222)
Q Consensus 58 ~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (222)
.|++|||+|+|+|..++..++.+...+++.|+.|......+-|++.|+. .+.+...+...
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv---~i~~~~~d~~g----------------- 138 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGV---SILFTHADLIG----------------- 138 (218)
T ss_pred ccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccc---eeEEeeccccC-----------------
Confidence 4899999999999999999999999999999999999999999988885 45555444321
Q ss_pred cccccCCCCCCCeeEEEecccccc--H-HHHHHHHHHcccCCeEEEE
Q 047371 138 SHEIRGISETEEYDVVIANILLNP--L-PQLADHIVSYAKPGAVVGI 181 (222)
Q Consensus 138 ~~~~~~~~~~~~~D~v~~~~~~~~--~-~~~l~~~~~~LkpgG~l~~ 181 (222)
.+..||+++....++. . ..+++ ....++..|..++
T Consensus 139 --------~~~~~Dl~LagDlfy~~~~a~~l~~-~~~~l~~~g~~vl 176 (218)
T COG3897 139 --------SPPAFDLLLAGDLFYNHTEADRLIP-WKDRLAEAGAAVL 176 (218)
T ss_pred --------CCcceeEEEeeceecCchHHHHHHH-HHHHHHhCCCEEE
Confidence 4567999998665543 2 23556 5555555555444
No 234
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.12 E-value=0.00013 Score=62.74 Aligned_cols=123 Identities=10% Similarity=0.111 Sum_probs=75.2
Q ss_pred hcCCCcEEEEccCCCHHHHHHHHh-----CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeE--EecCCcccccccccc
Q 047371 56 IKGGELFLDYGTGSGILGIAAIKF-----GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKL--HLVPDRTFTASMNER 128 (222)
Q Consensus 56 ~~~~~~vLD~G~G~G~~~~~la~~-----~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~--~~~~~~~~~~~~~~~ 128 (222)
+.++..++|+|||+|.-+..+.+. ...+++++|+|..+++.+..++...... .+.+ .+++......-++.
T Consensus 74 i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p--~l~v~~l~gdy~~~l~~l~~- 150 (319)
T TIGR03439 74 IPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFS--HVRCAGLLGTYDDGLAWLKR- 150 (319)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCC--CeEEEEEEecHHHHHhhccc-
Confidence 556779999999999876655431 2467999999999999999888733332 3444 44444321100000
Q ss_pred cccchhccccccccCCCCCCCeeEEEe-cccccc-----HHHHHHHHHH-cccCCeEEEEecCCCCcHHHHHHHH
Q 047371 129 VDGVVEYLSSHEIRGISETEEYDVVIA-NILLNP-----LPQLADHIVS-YAKPGAVVGISGILSEQLPRIINRY 196 (222)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~D~v~~-~~~~~~-----~~~~l~~~~~-~LkpgG~l~~~~~~~~~~~~~~~~~ 196 (222)
+ . ......+++. ...+.+ ...++..+++ .|+|||.+++.--.......+..+|
T Consensus 151 --~------------~-~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D~~k~~~~l~~AY 210 (319)
T TIGR03439 151 --P------------E-NRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLDGCKDPDKVLRAY 210 (319)
T ss_pred --c------------c-ccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHh
Confidence 0 0 1122355554 223332 3457899999 9999999998533444455555554
No 235
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=98.12 E-value=2.1e-05 Score=67.78 Aligned_cols=170 Identities=18% Similarity=0.257 Sum_probs=107.1
Q ss_pred eeEEeCCCcccccCCcc--hhHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHhC-CCEEEEEeCChHHHHHHHHHHH-
Q 047371 27 TNIILNPGLAFGTGEHA--TTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFG-AAMFVGVDIDPQVIKSAHQNAA- 102 (222)
Q Consensus 27 ~~~~~~~~~~f~~~~~~--~~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~- 102 (222)
..+-+|-+..|.+.... ...++...+ +.++...++|-+|.|.|.-+..+.+++ ..+++-+|++|.+++.++.+..
T Consensus 257 ~rLYldG~LQfsTrDe~RYhEsLV~pal-s~~~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vl 335 (508)
T COG4262 257 LRLYLDGGLQFSTRDEYRYHESLVYPAL-SSVRGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVL 335 (508)
T ss_pred eEEEEcCceeeeechhhhhhheeeeccc-ccccccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHh
Confidence 34557777777554332 222222222 223456789999999999999999986 7899999999999999985432
Q ss_pred ----hcCCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEeccccc--c------HHHHHHHHH
Q 047371 103 ----LNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLN--P------LPQLADHIV 170 (222)
Q Consensus 103 ----~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~--~------~~~~l~~~~ 170 (222)
.+.++..++++...|+-++-. . ..+.||++|.+.+=. + ..++...+.
T Consensus 336 r~~N~~sf~dpRv~Vv~dDAf~wlr-------------------~--a~~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~ 394 (508)
T COG4262 336 RALNQGSFSDPRVTVVNDDAFQWLR-------------------T--AADMFDVVIVDLPDPSTPSIGRLYSVEFYRLLS 394 (508)
T ss_pred hhhccCCccCCeeEEEeccHHHHHH-------------------h--hcccccEEEEeCCCCCCcchhhhhhHHHHHHHH
Confidence 333444667777776644321 0 355899999865321 1 346788899
Q ss_pred HcccCCeEEEEe-cC---CCCcHHHHHHHHHhh-hhc----ceecccCCceEeeccc
Q 047371 171 SYAKPGAVVGIS-GI---LSEQLPRIINRYSEF-LED----ILVSEKDDWRCVSGTK 218 (222)
Q Consensus 171 ~~LkpgG~l~~~-~~---~~~~~~~~~~~~~~~-~~~----~~~~~~~~w~~~~~~k 218 (222)
+.|+++|..++. +. ..+-...+...+++. +.. ..+-..|+|--+...+
T Consensus 395 ~~l~e~Gl~VvQags~y~tp~vfw~i~aTik~AG~~~~Pyhv~VPTFGeWGf~l~~~ 451 (508)
T COG4262 395 RHLAETGLMVVQAGSPYFTPRVFWRIDATIKSAGYRVWPYHVHVPTFGEWGFILAAP 451 (508)
T ss_pred HhcCcCceEEEecCCCccCCceeeeehhHHHhCcceeeeeEEecCcccccceeeccc
Confidence 999999998883 21 122223333333332 222 2344678886665544
No 236
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=98.11 E-value=3.4e-06 Score=70.15 Aligned_cols=141 Identities=17% Similarity=0.176 Sum_probs=77.7
Q ss_pred CCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcc-
Q 047371 58 GGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYL- 136 (222)
Q Consensus 58 ~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~- 136 (222)
+|.++||+|||+-......+.....+|+..|..+...+..++-++..+. +.+.....+.+.+++......|.+
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a------~DWs~~~~~v~~lEg~~~~~~e~e~ 129 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGA------FDWSPFWKYVCELEGKREKWEEKEE 129 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--------THHHHHHHHHHTTSSSGHHHHHH
T ss_pred CCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCC------CCccHHHHHHHhccCCcchhhhHHH
Confidence 4668999999997665544545578899999999999888777654321 112111111111111100000000
Q ss_pred ----------cccccc--CCCC----CCCeeEEEecccccc-------HHHHHHHHHHcccCCeEEEEecCC--------
Q 047371 137 ----------SSHEIR--GISE----TEEYDVVIANILLNP-------LPQLADHIVSYAKPGAVVGISGIL-------- 185 (222)
Q Consensus 137 ----------~~~~~~--~~~~----~~~~D~v~~~~~~~~-------~~~~l~~~~~~LkpgG~l~~~~~~-------- 185 (222)
.|+-.+ ++.+ ..+||+|++...++. +...++++.++|||||++++.+..
T Consensus 130 ~lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG 209 (256)
T PF01234_consen 130 KLRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVG 209 (256)
T ss_dssp HHHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEET
T ss_pred HHHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEEC
Confidence 011111 1112 235999998766543 567899999999999999984332
Q ss_pred -------CCcHHHHHHHHHhh-hhcce
Q 047371 186 -------SEQLPRIINRYSEF-LEDIL 204 (222)
Q Consensus 186 -------~~~~~~~~~~~~~~-~~~~~ 204 (222)
.-+.+.+.+.+++. +....
T Consensus 210 ~~~F~~l~l~ee~v~~al~~aG~~i~~ 236 (256)
T PF01234_consen 210 GHKFPCLPLNEEFVREALEEAGFDIED 236 (256)
T ss_dssp TEEEE---B-HHHHHHHHHHTTEEEEE
T ss_pred CEecccccCCHHHHHHHHHHcCCEEEe
Confidence 34556777777765 44333
No 237
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=98.11 E-value=6.4e-05 Score=64.93 Aligned_cols=127 Identities=13% Similarity=0.128 Sum_probs=83.1
Q ss_pred hcCCCcEEEEccCCCHHHHHHHHh---C--CCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccc
Q 047371 56 IKGGELFLDYGTGSGILGIAAIKF---G--AAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVD 130 (222)
Q Consensus 56 ~~~~~~vLD~G~G~G~~~~~la~~---~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 130 (222)
++|+++|||+++.+|+-+..+.+. . .+.+++-|.++..+.....-+...+- .++.....+...++...
T Consensus 153 v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~--~~~~v~~~~~~~~p~~~----- 225 (375)
T KOG2198|consen 153 VKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPS--PNLLVTNHDASLFPNIY----- 225 (375)
T ss_pred cCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCC--cceeeecccceeccccc-----
Confidence 679999999999999988766653 2 23899999999988888766644332 24444444443332100
Q ss_pred cchhccccccccCCC--CCCCeeEEEecccccc--------------------------HHHHHHHHHHcccCCeEEEEe
Q 047371 131 GVVEYLSSHEIRGIS--ETEEYDVVIANILLNP--------------------------LPQLADHIVSYAKPGAVVGIS 182 (222)
Q Consensus 131 ~~~~~~~~~~~~~~~--~~~~~D~v~~~~~~~~--------------------------~~~~l~~~~~~LkpgG~l~~~ 182 (222)
..++- ....||-|+++.|+.. ...++....++||+||.++.+
T Consensus 226 ----------~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYS 295 (375)
T KOG2198|consen 226 ----------LKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYS 295 (375)
T ss_pred ----------cccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEe
Confidence 00010 3446999999887643 224789999999999999987
Q ss_pred cC---CCCcHHHHHHHHHhh
Q 047371 183 GI---LSEQLPRIINRYSEF 199 (222)
Q Consensus 183 ~~---~~~~~~~~~~~~~~~ 199 (222)
+. +.++..-+.+.++..
T Consensus 296 TCSLnpieNEaVV~~~L~~~ 315 (375)
T KOG2198|consen 296 TCSLNPIENEAVVQEALQKV 315 (375)
T ss_pred ccCCCchhhHHHHHHHHHHh
Confidence 44 334444455555444
No 238
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=98.08 E-value=0.00022 Score=57.61 Aligned_cols=127 Identities=19% Similarity=0.176 Sum_probs=99.1
Q ss_pred HHHHHHhhhcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccc
Q 047371 48 CLLLLQSLIKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMN 126 (222)
Q Consensus 48 ~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 126 (222)
.+..+..+++.+.+++|+||.-+++...+.+. ....+++.|+++..++.|.+++..+++. ++++...+|....
T Consensus 6 RL~~va~~V~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~-~~i~vr~~dgl~~----- 79 (226)
T COG2384 6 RLTTVANLVKQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLS-ERIDVRLGDGLAV----- 79 (226)
T ss_pred HHHHHHHHHHcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCc-ceEEEeccCCccc-----
Confidence 34556677888888999999999999998875 5678999999999999999999999987 6888888876332
Q ss_pred cccccchhccccccccCCCCCCCeeEEEecccc-ccHHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHhh
Q 047371 127 ERVDGVVEYLSSHEIRGISETEEYDVVIANILL-NPLPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSEF 199 (222)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~-~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~ 199 (222)
+..+..+|+++...+- .-+.+++++-.+.|+.=-++++ -++.+...+++.+...
T Consensus 80 -----------------l~~~d~~d~ivIAGMGG~lI~~ILee~~~~l~~~~rlIL--QPn~~~~~LR~~L~~~ 134 (226)
T COG2384 80 -----------------LELEDEIDVIVIAGMGGTLIREILEEGKEKLKGVERLIL--QPNIHTYELREWLSAN 134 (226)
T ss_pred -----------------cCccCCcCEEEEeCCcHHHHHHHHHHhhhhhcCcceEEE--CCCCCHHHHHHHHHhC
Confidence 2245578888875543 3367788888888876556666 3777888888888776
No 239
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=98.04 E-value=1.2e-05 Score=68.66 Aligned_cols=105 Identities=18% Similarity=0.251 Sum_probs=77.8
Q ss_pred hhcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHH-------HHHHHHHhcCCCCCceeEEecCCccccccccc
Q 047371 55 LIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIK-------SAHQNAALNNIGPKKIKLHLVPDRTFTASMNE 127 (222)
Q Consensus 55 ~~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~-------~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 127 (222)
++++|+-|+|...|+|++....+..| +.|+|.||+-.++. ..+.|++..+...--+.+...|.....
T Consensus 205 mv~pGdivyDPFVGTGslLvsaa~FG-a~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~----- 278 (421)
T KOG2671|consen 205 MVKPGDIVYDPFVGTGSLLVSAAHFG-AYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPP----- 278 (421)
T ss_pred ccCCCCEEecCccccCceeeehhhhc-ceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcc-----
Confidence 37899999999999999999999997 68999999998877 235566666644222334444443322
Q ss_pred ccccchhccccccccCCCCCCCeeEEEecccccc------------------------------------HHHHHHHHHH
Q 047371 128 RVDGVVEYLSSHEIRGISETEEYDVVIANILLNP------------------------------------LPQLADHIVS 171 (222)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~------------------------------------~~~~l~~~~~ 171 (222)
|..+-.||.|+|+||+.. +.+++.-.++
T Consensus 279 ----------------~rsn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~ 342 (421)
T KOG2671|consen 279 ----------------LRSNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSR 342 (421)
T ss_pred ----------------hhhcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHh
Confidence 224668999999999642 2346888899
Q ss_pred cccCCeEEEE
Q 047371 172 YAKPGAVVGI 181 (222)
Q Consensus 172 ~LkpgG~l~~ 181 (222)
.|..||++++
T Consensus 343 ~L~~ggrlv~ 352 (421)
T KOG2671|consen 343 RLVDGGRLVF 352 (421)
T ss_pred hhhcCceEEE
Confidence 9999999998
No 240
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.97 E-value=0.00018 Score=54.57 Aligned_cols=49 Identities=24% Similarity=0.323 Sum_probs=43.0
Q ss_pred cCCCcEEEEccCCCHHHHHHHH-----hCCCEEEEEeCChHHHHHHHHHHHhcC
Q 047371 57 KGGELFLDYGTGSGILGIAAIK-----FGAAMFVGVDIDPQVIKSAHQNAALNN 105 (222)
Q Consensus 57 ~~~~~vLD~G~G~G~~~~~la~-----~~~~~v~gvD~s~~~l~~a~~~~~~~~ 105 (222)
.+...|+|+|||.|+++..++. .+..+|+|+|.++..++.+.++....+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~ 77 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLG 77 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhc
Confidence 4577999999999999999988 556799999999999999998887655
No 241
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.90 E-value=0.00012 Score=61.66 Aligned_cols=100 Identities=24% Similarity=0.306 Sum_probs=65.4
Q ss_pred CCcEEEEccCCC-HHHHHHHHh--CCCEEEEEeCChHHHHHHHHHHH-hcCCCCCceeEEecCCcccccccccccccchh
Q 047371 59 GELFLDYGTGSG-ILGIAAIKF--GAAMFVGVDIDPQVIKSAHQNAA-LNNIGPKKIKLHLVPDRTFTASMNERVDGVVE 134 (222)
Q Consensus 59 ~~~vLD~G~G~G-~~~~~la~~--~~~~v~gvD~s~~~l~~a~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 134 (222)
+++|+=+|+|+= ..++.+++. ....++++|+++.+++.+++.+. ..++. .++.+...|......
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~-~~m~f~~~d~~~~~~----------- 188 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLS-KRMSFITADVLDVTY----------- 188 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH--SSEEEEES-GGGG-G-----------
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhccccc-CCeEEEecchhcccc-----------
Confidence 359999999985 455566653 34679999999999999998877 55665 588898887754421
Q ss_pred ccccccccCCCCCCCeeEEEeccccc----cHHHHHHHHHHcccCCeEEEE
Q 047371 135 YLSSHEIRGISETEEYDVVIANILLN----PLPQLADHIVSYAKPGAVVGI 181 (222)
Q Consensus 135 ~~~~~~~~~~~~~~~~D~v~~~~~~~----~~~~~l~~~~~~LkpgG~l~~ 181 (222)
....||+|+...... .-.+++.++.+.++||..+++
T Consensus 189 -----------dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~ 228 (276)
T PF03059_consen 189 -----------DLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVV 228 (276)
T ss_dssp -----------G----SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEE
T ss_pred -----------ccccCCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEE
Confidence 346799999887776 677899999999999999888
No 242
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.90 E-value=0.0005 Score=55.77 Aligned_cols=116 Identities=22% Similarity=0.228 Sum_probs=74.9
Q ss_pred hhHHHHHHHHhh----hcCCCcEEEEccCCCHHHHHHHHh--CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecC
Q 047371 44 TTKLCLLLLQSL----IKGGELFLDYGTGSGILGIAAIKF--GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVP 117 (222)
Q Consensus 44 ~~~~~~~~l~~~----~~~~~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~ 117 (222)
.+++...++..+ +++|.+||-+|+++|...-+++.. +.+.|+|+|.++......-..+... .|+--...|
T Consensus 55 RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R----~NIiPIl~D 130 (229)
T PF01269_consen 55 RSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR----PNIIPILED 130 (229)
T ss_dssp T-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS----TTEEEEES-
T ss_pred hhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC----Cceeeeecc
Confidence 344444444332 678999999999999988888874 3679999999997766655444332 266667777
Q ss_pred CcccccccccccccchhccccccccCCCCCCCeeEEEeccccccHHH-HHHHHHHcccCCeEEEEe
Q 047371 118 DRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQ-LADHIVSYAKPGAVVGIS 182 (222)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~-~l~~~~~~LkpgG~l~~~ 182 (222)
+..... -.. --+.+|+|+++-.-....+ ++.++...||+||.++++
T Consensus 131 Ar~P~~-----Y~~--------------lv~~VDvI~~DVaQp~Qa~I~~~Na~~fLk~gG~~~i~ 177 (229)
T PF01269_consen 131 ARHPEK-----YRM--------------LVEMVDVIFQDVAQPDQARIAALNARHFLKPGGHLIIS 177 (229)
T ss_dssp TTSGGG-----GTT--------------TS--EEEEEEE-SSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCChHH-----hhc--------------ccccccEEEecCCChHHHHHHHHHHHhhccCCcEEEEE
Confidence 654311 001 1347999999876544444 567788899999999884
No 243
>KOG2730 consensus Methylase [General function prediction only]
Probab=97.84 E-value=4.7e-05 Score=61.37 Aligned_cols=83 Identities=22% Similarity=0.268 Sum_probs=64.2
Q ss_pred CCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccc
Q 047371 58 GGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLS 137 (222)
Q Consensus 58 ~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (222)
....|+|..||.|..++..+..+ ..|+++|++|..+..|+.|+.-.|+. ++++|.++|...+-.++
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~-~~VisIdiDPikIa~AkhNaeiYGI~-~rItFI~GD~ld~~~~l------------ 159 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQG-PYVIAIDIDPVKIACARHNAEVYGVP-DRITFICGDFLDLASKL------------ 159 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhC-CeEEEEeccHHHHHHHhccceeecCC-ceeEEEechHHHHHHHH------------
Confidence 46789999999998888776664 68999999999999999999999998 49999999875442110
Q ss_pred cccccCCCCCCCeeEEEeccccc
Q 047371 138 SHEIRGISETEEYDVVIANILLN 160 (222)
Q Consensus 138 ~~~~~~~~~~~~~D~v~~~~~~~ 160 (222)
......+|+++..+|..
T Consensus 160 ------q~~K~~~~~vf~sppwg 176 (263)
T KOG2730|consen 160 ------KADKIKYDCVFLSPPWG 176 (263)
T ss_pred ------hhhhheeeeeecCCCCC
Confidence 00233488999877754
No 244
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.81 E-value=9.1e-05 Score=55.80 Aligned_cols=55 Identities=18% Similarity=0.271 Sum_probs=45.7
Q ss_pred cEEEEccCCCHHHHHHHHhC-CCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecC
Q 047371 61 LFLDYGTGSGILGIAAIKFG-AAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVP 117 (222)
Q Consensus 61 ~vLD~G~G~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~ 117 (222)
+++|+|||.|.++..+++.+ ..+++++|.++.+++.+++++..+++. ++.+....
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~--~v~~~~~a 56 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLP--NVVLLNAA 56 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCC--cEEEEEee
Confidence 48999999999999888764 348999999999999999999888764 56655544
No 245
>PRK10742 putative methyltransferase; Provisional
Probab=97.81 E-value=9.5e-05 Score=61.07 Aligned_cols=84 Identities=18% Similarity=0.113 Sum_probs=63.4
Q ss_pred hcCCC--cEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhc------CC-CCCceeEEecCCcccccccc
Q 047371 56 IKGGE--LFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALN------NI-GPKKIKLHLVPDRTFTASMN 126 (222)
Q Consensus 56 ~~~~~--~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~------~~-~~~~v~~~~~~~~~~~~~~~ 126 (222)
+++|. +|||+.+|.|..++.++..|. +|+++|-++......+.++... +. -..++++...+...+.
T Consensus 84 lk~g~~p~VLD~TAGlG~Da~~las~G~-~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L---- 158 (250)
T PRK10742 84 IKGDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTAL---- 158 (250)
T ss_pred CCCCCCCEEEECCCCccHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHH----
Confidence 35677 899999999999999999975 5999999999999888888763 11 0135667776654442
Q ss_pred cccccchhccccccccCCCCCCCeeEEEecccccc
Q 047371 127 ERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP 161 (222)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~ 161 (222)
.. ....||+|+.+|+|.+
T Consensus 159 ---------------~~--~~~~fDVVYlDPMfp~ 176 (250)
T PRK10742 159 ---------------TD--ITPRPQVVYLDPMFPH 176 (250)
T ss_pred ---------------hh--CCCCCcEEEECCCCCC
Confidence 11 1236999999999976
No 246
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.79 E-value=6.8e-05 Score=65.54 Aligned_cols=104 Identities=22% Similarity=0.178 Sum_probs=81.3
Q ss_pred hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371 56 IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY 135 (222)
Q Consensus 56 ~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 135 (222)
..++..++|+|||.|.....++....++++|+|.++..+.++........+.. ...+...+...-++
T Consensus 108 ~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~-k~~~~~~~~~~~~f------------ 174 (364)
T KOG1269|consen 108 CFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDN-KCNFVVADFGKMPF------------ 174 (364)
T ss_pred CcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhh-hcceehhhhhcCCC------------
Confidence 45777899999999999999999887899999999999999888777666652 33344444433322
Q ss_pred cccccccCCCCCCCeeEEEecccccc---HHHHHHHHHHcccCCeEEEEe
Q 047371 136 LSSHEIRGISETEEYDVVIANILLNP---LPQLADHIVSYAKPGAVVGIS 182 (222)
Q Consensus 136 ~~~~~~~~~~~~~~~D~v~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~ 182 (222)
+++.||.+-+.....+ ....++++.+.+||||+.+..
T Consensus 175 ----------edn~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 175 ----------EDNTFDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred ----------CccccCcEEEEeecccCCcHHHHHHHHhcccCCCceEEeH
Confidence 6788999998665544 456899999999999999984
No 247
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.78 E-value=0.00068 Score=49.64 Aligned_cols=99 Identities=26% Similarity=0.466 Sum_probs=64.0
Q ss_pred EEEEccCCCHHHHHHHHhCC--CEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcc--cccccccccccchhccc
Q 047371 62 FLDYGTGSGILGIAAIKFGA--AMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRT--FTASMNERVDGVVEYLS 137 (222)
Q Consensus 62 vLD~G~G~G~~~~~la~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~ 137 (222)
++|+|||+|... .+..... ..++|+|.++.++..++......... .+.+...+... ...
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-------------- 114 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLG--LVDFVVADALGGVLPF-------------- 114 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCC--ceEEEEeccccCCCCC--------------
Confidence 999999999976 4444322 37899999999998855544321110 14455544432 111
Q ss_pred cccccCCCCC-CCeeEEEecccccc--HHHHHHHHHHcccCCeEEEEecCC
Q 047371 138 SHEIRGISET-EEYDVVIANILLNP--LPQLADHIVSYAKPGAVVGISGIL 185 (222)
Q Consensus 138 ~~~~~~~~~~-~~~D~v~~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~ 185 (222)
.. ..||++......++ ....+..+.+.++|+|.+++....
T Consensus 115 --------~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 115 --------EDSASFDLVISLLVLHLLPPAKALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred --------CCCCceeEEeeeeehhcCCHHHHHHHHHHhcCCCcEEEEEecc
Confidence 22 47999944443332 367899999999999999886443
No 248
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.75 E-value=0.00034 Score=60.32 Aligned_cols=87 Identities=16% Similarity=0.270 Sum_probs=60.2
Q ss_pred cCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcc
Q 047371 57 KGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYL 136 (222)
Q Consensus 57 ~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (222)
.+|+++||+||++|.++..+.+.+. +|+|+|..+-. ..+.. ..++.....+.-.+..
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~l~-----~~L~~----~~~V~h~~~d~fr~~p------------- 266 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGPMA-----QSLMD----TGQVEHLRADGFKFRP------------- 266 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechhcC-----HhhhC----CCCEEEEeccCcccCC-------------
Confidence 5789999999999999999999875 99999965411 11111 1366666665433210
Q ss_pred ccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCC
Q 047371 137 SSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPG 176 (222)
Q Consensus 137 ~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~Lkpg 176 (222)
+.+.+|+++|+....+ ..+++.+.+.|..|
T Consensus 267 ---------~~~~vDwvVcDmve~P-~rva~lm~~Wl~~g 296 (357)
T PRK11760 267 ---------PRKNVDWLVCDMVEKP-ARVAELMAQWLVNG 296 (357)
T ss_pred ---------CCCCCCEEEEecccCH-HHHHHHHHHHHhcC
Confidence 2567999999987663 45666666666665
No 249
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=97.69 E-value=0.00029 Score=60.21 Aligned_cols=72 Identities=19% Similarity=0.263 Sum_probs=49.9
Q ss_pred HHHHHHHhh-hcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccc
Q 047371 47 LCLLLLQSL-IKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTF 121 (222)
Q Consensus 47 ~~~~~l~~~-~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~ 121 (222)
++.+.+..+ .+++..++|.-.|.|..+..+.+. +..+++|+|.++.+++.|++++... ..++.+...+...+
T Consensus 8 ll~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~---~~r~~~~~~~F~~l 81 (310)
T PF01795_consen 8 LLKEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF---DDRFIFIHGNFSNL 81 (310)
T ss_dssp THHHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC---CTTEEEEES-GGGH
T ss_pred cHHHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc---cceEEEEeccHHHH
Confidence 344444444 457889999999999999988764 5689999999999999999877543 24788888776554
No 250
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.67 E-value=0.00031 Score=60.38 Aligned_cols=93 Identities=14% Similarity=0.138 Sum_probs=71.1
Q ss_pred CcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccccc
Q 047371 60 ELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSH 139 (222)
Q Consensus 60 ~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (222)
...+|+|.|.|.++..+.. .+.++-+++.+...+..++..+. .|+ ....+|.-+
T Consensus 179 ~~avDvGgGiG~v~k~ll~-~fp~ik~infdlp~v~~~a~~~~-~gV-----~~v~gdmfq------------------- 232 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLS-KYPHIKGINFDLPFVLAAAPYLA-PGV-----EHVAGDMFQ------------------- 232 (342)
T ss_pred ceEEEcCCcHhHHHHHHHH-hCCCCceeecCHHHHHhhhhhhc-CCc-----ceecccccc-------------------
Confidence 6899999999999998887 45679999999998888877764 443 344444311
Q ss_pred cccCCCCCCCeeEEEecccccc-----HHHHHHHHHHcccCCeEEEEecC
Q 047371 140 EIRGISETEEYDVVIANILLNP-----LPQLADHIVSYAKPGAVVGISGI 184 (222)
Q Consensus 140 ~~~~~~~~~~~D~v~~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~ 184 (222)
...+-|+|++.-.+++ ..++++++.+.|+|+|.+++.+.
T Consensus 233 ------~~P~~daI~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 233 ------DTPKGDAIWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred ------cCCCcCeEEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 1233579999888876 44689999999999999999654
No 251
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.65 E-value=0.0027 Score=53.76 Aligned_cols=75 Identities=20% Similarity=0.202 Sum_probs=57.2
Q ss_pred hhHHHHHHHHhh-hcCCCcEEEEccCCCHHHHHHHHh-C-CCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcc
Q 047371 44 TTKLCLLLLQSL-IKGGELFLDYGTGSGILGIAAIKF-G-AAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRT 120 (222)
Q Consensus 44 ~~~~~~~~l~~~-~~~~~~vLD~G~G~G~~~~~la~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~ 120 (222)
.+-++.+.+..+ .+++...+|.--|.|..+..+.+. + .++++|+|.++.+++.|++.+...+ +++.++......
T Consensus 8 ipVLl~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~---~r~~~v~~~F~~ 84 (314)
T COG0275 8 IPVLLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD---GRVTLVHGNFAN 84 (314)
T ss_pred cchHHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC---CcEEEEeCcHHH
Confidence 444555666555 567789999999999999987765 2 4679999999999999999887644 477777776544
Q ss_pred c
Q 047371 121 F 121 (222)
Q Consensus 121 ~ 121 (222)
+
T Consensus 85 l 85 (314)
T COG0275 85 L 85 (314)
T ss_pred H
Confidence 3
No 252
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.64 E-value=4.7e-05 Score=54.60 Aligned_cols=99 Identities=15% Similarity=0.180 Sum_probs=43.1
Q ss_pred EEEccCCCHHHHHHHHh----CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcccc
Q 047371 63 LDYGTGSGILGIAAIKF----GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSS 138 (222)
Q Consensus 63 LD~G~G~G~~~~~la~~----~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (222)
||+|+..|..+..+++. +..+++++|..+. .+.+++.++..++. .++++...+....- ..+
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~-~~~~~~~g~s~~~l-------~~~------ 65 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLS-DRVEFIQGDSPDFL-------PSL------ 65 (106)
T ss_dssp --------------------------EEEESS-------------GGG--BTEEEEES-THHHH-------HHH------
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCC-CeEEEEEcCcHHHH-------HHc------
Confidence 68999999888876652 2247999999996 33444444444544 47888888764331 111
Q ss_pred ccccCCCCCCCeeEEEeccc--cccHHHHHHHHHHcccCCeEEEEec
Q 047371 139 HEIRGISETEEYDVVIANIL--LNPLPQLADHIVSYAKPGAVVGISG 183 (222)
Q Consensus 139 ~~~~~~~~~~~~D~v~~~~~--~~~~~~~l~~~~~~LkpgG~l~~~~ 183 (222)
+.+++|+++.+.. .......++.+...|+|||++++.+
T Consensus 66 -------~~~~~dli~iDg~H~~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 66 -------PDGPIDLIFIDGDHSYEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp -------HH--EEEEEEES---HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred -------CCCCEEEEEECCCCCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 2468999998763 3445567899999999999998753
No 253
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=97.64 E-value=6.9e-05 Score=62.61 Aligned_cols=114 Identities=16% Similarity=0.224 Sum_probs=80.2
Q ss_pred cccCCcchhHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEec
Q 047371 37 FGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLV 116 (222)
Q Consensus 37 f~~~~~~~~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~ 116 (222)
|....+...-.+.+++... ..+..++|+|||+|-.+.. ++...++|+|++...+..+++. + .......
T Consensus 25 fs~tr~~~Wp~v~qfl~~~-~~gsv~~d~gCGngky~~~---~p~~~~ig~D~c~~l~~~ak~~----~----~~~~~~a 92 (293)
T KOG1331|consen 25 FSATRAAPWPMVRQFLDSQ-PTGSVGLDVGCGNGKYLGV---NPLCLIIGCDLCTGLLGGAKRS----G----GDNVCRA 92 (293)
T ss_pred ccccccCccHHHHHHHhcc-CCcceeeecccCCcccCcC---CCcceeeecchhhhhccccccC----C----Cceeehh
Confidence 4444555555566666554 3488999999999976542 3567899999999888777652 1 1124445
Q ss_pred CCcccccccccccccchhccccccccCCCCCCCeeEEEeccccccH------HHHHHHHHHcccCCeEEEEecC
Q 047371 117 PDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPL------PQLADHIVSYAKPGAVVGISGI 184 (222)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~------~~~l~~~~~~LkpgG~l~~~~~ 184 (222)
|+...+. ...+||.+++...+||+ ..+++++.+.|+|||...+..+
T Consensus 93 d~l~~p~----------------------~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvw 144 (293)
T KOG1331|consen 93 DALKLPF----------------------REESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYVW 144 (293)
T ss_pred hhhcCCC----------------------CCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 5444332 67789999999989884 3479999999999999776433
No 254
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.63 E-value=0.00071 Score=54.57 Aligned_cols=104 Identities=15% Similarity=0.185 Sum_probs=75.7
Q ss_pred hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371 56 IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY 135 (222)
Q Consensus 56 ~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 135 (222)
..+|.+||.+|-|-|.+.-.+.+.+..+-+.+|..|..++..+...-. +.+++....+.-+... ..+
T Consensus 99 ~tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~---ek~nViil~g~WeDvl-------~~L--- 165 (271)
T KOG1709|consen 99 STKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWR---EKENVIILEGRWEDVL-------NTL--- 165 (271)
T ss_pred hhCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccc---cccceEEEecchHhhh-------ccc---
Confidence 357999999999999998888877666667889999999988876432 2246666555433221 112
Q ss_pred cccccccCCCCCCCeeEEEeccc---cccHHHHHHHHHHcccCCeEEEEe
Q 047371 136 LSSHEIRGISETEEYDVVIANIL---LNPLPQLADHIVSYAKPGAVVGIS 182 (222)
Q Consensus 136 ~~~~~~~~~~~~~~~D~v~~~~~---~~~~~~~l~~~~~~LkpgG~l~~~ 182 (222)
+++.||=|+.+-- ++.+..+.+++.++|||+|++-+.
T Consensus 166 ----------~d~~FDGI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 166 ----------PDKHFDGIYYDTYSELYEDLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred ----------cccCcceeEeechhhHHHHHHHHHHHHhhhcCCCceEEEe
Confidence 6777999997542 334566889999999999998763
No 255
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=97.57 E-value=0.00026 Score=57.14 Aligned_cols=54 Identities=28% Similarity=0.477 Sum_probs=41.8
Q ss_pred hHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHH
Q 047371 45 TKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQ 99 (222)
Q Consensus 45 ~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~ 99 (222)
..++..+++....+|+.|||..||+|..+..+.+.+ .+.+|+|+++...+.|++
T Consensus 178 ~~l~~~lI~~~t~~gdiVlDpF~GSGTT~~aa~~l~-R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 178 VELIERLIKASTNPGDIVLDPFAGSGTTAVAAEELG-RRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HHHHHHHHHHHS-TT-EEEETT-TTTHHHHHHHHTT--EEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHhhhccceeeehhhhccChHHHHHHHcC-CeEEEEeCCHHHHHHhcC
Confidence 345555555557789999999999999999988886 689999999999998874
No 256
>PRK11524 putative methyltransferase; Provisional
Probab=97.56 E-value=0.00028 Score=59.79 Aligned_cols=56 Identities=25% Similarity=0.329 Sum_probs=47.1
Q ss_pred HHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHH
Q 047371 46 KLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAA 102 (222)
Q Consensus 46 ~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~ 102 (222)
.++..+++..-.+|+.|||..+|+|..++++.+.+ .+.+|+|++++.++.|++++.
T Consensus 196 ~L~erlI~~~S~~GD~VLDPF~GSGTT~~AA~~lg-R~~IG~Ei~~~Y~~~a~~Rl~ 251 (284)
T PRK11524 196 ALLKRIILASSNPGDIVLDPFAGSFTTGAVAKASG-RKFIGIEINSEYIKMGLRRLD 251 (284)
T ss_pred HHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHcC-CCEEEEeCCHHHHHHHHHHHH
Confidence 34444454556789999999999999999888886 789999999999999999975
No 257
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.47 E-value=0.0017 Score=54.77 Aligned_cols=116 Identities=22% Similarity=0.211 Sum_probs=68.0
Q ss_pred CCCcEEEEccCCCHHHHHHHHh--CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371 58 GGELFLDYGTGSGILGIAAIKF--GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY 135 (222)
Q Consensus 58 ~~~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 135 (222)
.+.+|||+|+|+|.-+..+... ...+++++|.|+.+++.++..+....-. .............
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~-~~~~~~~~~~~~~-------------- 97 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNN-RNAEWRRVLYRDF-------------- 97 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhccccc-ccchhhhhhhccc--------------
Confidence 3569999999999755544432 3568999999999999998876532211 0110000000000
Q ss_pred cccccccCCCCCCCeeEEEecccccc-----HHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHhh
Q 047371 136 LSSHEIRGISETEEYDVVIANILLNP-----LPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSEF 199 (222)
Q Consensus 136 ~~~~~~~~~~~~~~~D~v~~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~ 199 (222)
.+..+.|+|++...+.- ...+++.+.+.+.+ ++++.+......-+....+.+.
T Consensus 98 ---------~~~~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~Gf~~i~~aR~~ 155 (274)
T PF09243_consen 98 ---------LPFPPDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPAGFRRIAEARDQ 155 (274)
T ss_pred ---------ccCCCCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChHHHHHHHHHHHH
Confidence 02233499998655432 33466777666655 8888766655544444444443
No 258
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.44 E-value=0.0011 Score=50.41 Aligned_cols=115 Identities=17% Similarity=0.195 Sum_probs=77.8
Q ss_pred CCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcccc
Q 047371 59 GELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSS 138 (222)
Q Consensus 59 ~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (222)
.-+.+|+|.|.|.+....++.+....+|+|+++..+.+++-..-+.++. +...|...|.-.+
T Consensus 73 ~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~-k~trf~RkdlwK~----------------- 134 (199)
T KOG4058|consen 73 KGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCA-KSTRFRRKDLWKV----------------- 134 (199)
T ss_pred CCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcc-cchhhhhhhhhhc-----------------
Confidence 3579999999999999888887667899999999999999988888886 3555655554333
Q ss_pred ccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHhh
Q 047371 139 HEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSEF 199 (222)
Q Consensus 139 ~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~ 199 (222)
..+.|..++....-.-+.++-..+..-+..+..++..-++-.+ .+++....++
T Consensus 135 -------dl~dy~~vviFgaes~m~dLe~KL~~E~p~nt~vvacRFPLP~-w~leh~igeG 187 (199)
T KOG4058|consen 135 -------DLRDYRNVVIFGAESVMPDLEDKLRTELPANTRVVACRFPLPT-WQLEHAIGEG 187 (199)
T ss_pred -------cccccceEEEeehHHHHhhhHHHHHhhCcCCCeEEEEecCCCc-cchHhHhhcC
Confidence 2334444444333333566667777777788777765443322 3444444444
No 259
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.44 E-value=0.0029 Score=53.17 Aligned_cols=135 Identities=18% Similarity=0.159 Sum_probs=74.4
Q ss_pred HHHHHHHhhhc------CCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCC--
Q 047371 47 LCLLLLQSLIK------GGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPD-- 118 (222)
Q Consensus 47 ~~~~~l~~~~~------~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~-- 118 (222)
.+.+.|.+..+ ...+||-.|||-|.++..++..|+ .+.|.|.|-.|+-.....+.. ..+...+++..--.
T Consensus 39 ~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Mll~s~fiLn~-~~~~~~~~I~Pf~~~~ 116 (270)
T PF07942_consen 39 PILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFMLLASNFILNH-CSQPNQFTIYPFVHSF 116 (270)
T ss_pred HHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHHHHHHHHHcc-cCCCCcEEEecceecc
Confidence 34445555543 246899999999999999999986 789999999887665554321 11112232211000
Q ss_pred -------cccccccccccccch--hccccccc-----cC-CCC---CCCeeEEEecccccc---HHHHHHHHHHcccCCe
Q 047371 119 -------RTFTASMNERVDGVV--EYLSSHEI-----RG-ISE---TEEYDVVIANILLNP---LPQLADHIVSYAKPGA 177 (222)
Q Consensus 119 -------~~~~~~~~~~~~~~~--~~~~~~~~-----~~-~~~---~~~~D~v~~~~~~~~---~~~~l~~~~~~LkpgG 177 (222)
+++..-..++..+.. ...+...| .. +.+ .+.||+|+....++- +-++++.+.++|||||
T Consensus 117 sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG 196 (270)
T PF07942_consen 117 SNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGG 196 (270)
T ss_pred cCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCC
Confidence 000000000000000 00000000 00 112 368999997655543 5568999999999999
Q ss_pred EEEEec
Q 047371 178 VVGISG 183 (222)
Q Consensus 178 ~l~~~~ 183 (222)
+.+=.+
T Consensus 197 ~WIN~G 202 (270)
T PF07942_consen 197 YWINFG 202 (270)
T ss_pred EEEecC
Confidence 776533
No 260
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.43 E-value=0.00062 Score=55.45 Aligned_cols=104 Identities=25% Similarity=0.235 Sum_probs=65.8
Q ss_pred CCcchhHHHHHHHHhh----hcCCCcEEEEccCCCHHHHHHHH-hCCCEEEEEeCChHHHHHHHHHHHhc-CCCCCceeE
Q 047371 40 GEHATTKLCLLLLQSL----IKGGELFLDYGTGSGILGIAAIK-FGAAMFVGVDIDPQVIKSAHQNAALN-NIGPKKIKL 113 (222)
Q Consensus 40 ~~~~~~~~~~~~l~~~----~~~~~~vLD~G~G~G~~~~~la~-~~~~~v~gvD~s~~~l~~a~~~~~~~-~~~~~~v~~ 113 (222)
|...+-+-+.++|.+. ..++.++||+|.|.-.+=-.+.. ......+|.|+++.++..|+.++..+ +++ ..++.
T Consensus 56 gRAdYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~-~~I~l 134 (292)
T COG3129 56 GRADYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLE-RAIRL 134 (292)
T ss_pred ChhHHHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchh-hheeE
Confidence 3333555556666544 23456889999887543222221 22368999999999999999999877 555 45665
Q ss_pred EecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc
Q 047371 114 HLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP 161 (222)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~ 161 (222)
....-....+ .+ .+...+.||+++||||+|.
T Consensus 135 r~qk~~~~if------~g-----------iig~nE~yd~tlCNPPFh~ 165 (292)
T COG3129 135 RRQKDSDAIF------NG-----------IIGKNERYDATLCNPPFHD 165 (292)
T ss_pred EeccCccccc------cc-----------cccccceeeeEecCCCcch
Confidence 5443221111 11 1224788999999999986
No 261
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=97.39 E-value=0.0022 Score=51.85 Aligned_cols=138 Identities=14% Similarity=0.069 Sum_probs=83.9
Q ss_pred chhHHHHHHHHhhhcC------CCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEec
Q 047371 43 ATTKLCLLLLQSLIKG------GELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLV 116 (222)
Q Consensus 43 ~~~~~~~~~l~~~~~~------~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~ 116 (222)
.+.+.+.++|...... ..++||+||=+....... .+.-.|+.+|+++. ..+ +...
T Consensus 30 dSSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~--~~~fdvt~IDLns~----------~~~-------I~qq 90 (219)
T PF11968_consen 30 DSSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACST--SGWFDVTRIDLNSQ----------HPG-------ILQQ 90 (219)
T ss_pred chhHHHHHHhhhhccccccccccceEEeecccCCCCcccc--cCceeeEEeecCCC----------CCC-------ceee
Confidence 3788888888776321 248999999876544432 23335999999871 122 2222
Q ss_pred CCcccccccccccccchhccccccccCCCCCCCeeEEEeccccccH------HHHHHHHHHcccCCeE-----EEEecC-
Q 047371 117 PDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPL------PQLADHIVSYAKPGAV-----VGISGI- 184 (222)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~------~~~l~~~~~~LkpgG~-----l~~~~~- 184 (222)
|....+. +-.+.++||+|.+..+++.. .+++..+.+.|+|+|. +++.-.
T Consensus 91 DFm~rpl-------------------p~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~ 151 (219)
T PF11968_consen 91 DFMERPL-------------------PKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPL 151 (219)
T ss_pred ccccCCC-------------------CCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCc
Confidence 3222110 00146789999998887763 4589999999999999 777422
Q ss_pred ------CCCcHHHHHHHHHhh-hhcceecccCCceEeeccc
Q 047371 185 ------LSEQLPRIINRYSEF-LEDILVSEKDDWRCVSGTK 218 (222)
Q Consensus 185 ------~~~~~~~~~~~~~~~-~~~~~~~~~~~w~~~~~~k 218 (222)
..-..+.+.+.+... |..+.......-.+..++|
T Consensus 152 ~Cv~NSRy~~~~~l~~im~~LGf~~~~~~~~~Kl~y~l~r~ 192 (219)
T PF11968_consen 152 PCVTNSRYMTEERLREIMESLGFTRVKYKKSKKLAYWLFRK 192 (219)
T ss_pred hHhhcccccCHHHHHHHHHhCCcEEEEEEecCeEEEEEEee
Confidence 123345555555553 6666555554444444443
No 262
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=97.38 E-value=0.00096 Score=53.32 Aligned_cols=47 Identities=19% Similarity=0.217 Sum_probs=39.6
Q ss_pred CCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcC
Q 047371 59 GELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNN 105 (222)
Q Consensus 59 ~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~ 105 (222)
.-.+.|+|||-|.+++.++.. +...++|.||-...-++.++++....
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR 108 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALR 108 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHh
Confidence 347999999999999998864 77789999999988888888886544
No 263
>PRK13699 putative methylase; Provisional
Probab=97.38 E-value=0.0008 Score=55.25 Aligned_cols=57 Identities=25% Similarity=0.345 Sum_probs=47.3
Q ss_pred HHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHh
Q 047371 46 KLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAAL 103 (222)
Q Consensus 46 ~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~ 103 (222)
.++..++.....+|+.|||..||+|..+..+.+.+ .+.+|+|+++...+.|.+++..
T Consensus 151 ~l~~~~i~~~s~~g~~vlDpf~Gsgtt~~aa~~~~-r~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 151 TSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSG-RRYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred HHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHcC-CCEEEEecCHHHHHHHHHHHHH
Confidence 34445555556789999999999999999888876 6899999999999999888764
No 264
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.36 E-value=0.0061 Score=48.78 Aligned_cols=115 Identities=24% Similarity=0.285 Sum_probs=78.5
Q ss_pred hhHHHHHHHHhh----hcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCC
Q 047371 44 TTKLCLLLLQSL----IKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPD 118 (222)
Q Consensus 44 ~~~~~~~~l~~~----~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~ 118 (222)
.+++...+|..+ +++|++||=+|+.+|...-+++.. +.+.++|+|.++......-..+... .|+--...|+
T Consensus 58 RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R----~Ni~PIL~DA 133 (231)
T COG1889 58 RSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR----PNIIPILEDA 133 (231)
T ss_pred hhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC----CCceeeeccc
Confidence 445555555433 678999999999999988888775 5678999999998876655544332 2555566665
Q ss_pred cccccccccccccchhccccccccCCCCCCCeeEEEeccccccHHH-HHHHHHHcccCCeEEEE
Q 047371 119 RTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQ-LADHIVSYAKPGAVVGI 181 (222)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~-~l~~~~~~LkpgG~l~~ 181 (222)
.... .-.. --+.+|+|+.+-.-....+ ++.++...||+||++++
T Consensus 134 ~~P~-----~Y~~--------------~Ve~VDviy~DVAQp~Qa~I~~~Na~~FLk~~G~~~i 178 (231)
T COG1889 134 RKPE-----KYRH--------------LVEKVDVIYQDVAQPNQAEILADNAEFFLKKGGYVVI 178 (231)
T ss_pred CCcH-----Hhhh--------------hcccccEEEEecCCchHHHHHHHHHHHhcccCCeEEE
Confidence 4331 0011 1345899998765544444 57888999999998776
No 265
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.34 E-value=0.022 Score=46.89 Aligned_cols=98 Identities=17% Similarity=0.113 Sum_probs=57.6
Q ss_pred CCCcEEEEccCCCHHHHHHHH-hCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcc
Q 047371 58 GGELFLDYGTGSGILGIAAIK-FGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYL 136 (222)
Q Consensus 58 ~~~~vLD~G~G~G~~~~~la~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (222)
.|++||=+|=+.- .++.++. ....+|+.+|+++..++..++.+...++. ++....|....-. +
T Consensus 44 ~gk~il~lGDDDL-tSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~---i~~~~~DlR~~LP---~--------- 107 (243)
T PF01861_consen 44 EGKRILFLGDDDL-TSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP---IEAVHYDLRDPLP---E--------- 107 (243)
T ss_dssp TT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT-----EEEE---TTS------T---------
T ss_pred cCCEEEEEcCCcH-HHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc---eEEEEecccccCC---H---------
Confidence 5889998874432 3333332 34579999999999999999999888873 6676666543210 0
Q ss_pred ccccccCCCCCCCeeEEEecccccc--HHHHHHHHHHcccCCeEE
Q 047371 137 SSHEIRGISETEEYDVVIANILLNP--LPQLADHIVSYAKPGAVV 179 (222)
Q Consensus 137 ~~~~~~~~~~~~~~D~v~~~~~~~~--~~~~l~~~~~~LkpgG~l 179 (222)
.-.++||+++.+||+.. +.-++......||..|..
T Consensus 108 --------~~~~~fD~f~TDPPyT~~G~~LFlsRgi~~Lk~~g~~ 144 (243)
T PF01861_consen 108 --------ELRGKFDVFFTDPPYTPEGLKLFLSRGIEALKGEGCA 144 (243)
T ss_dssp --------TTSS-BSEEEE---SSHHHHHHHHHHHHHTB-STT-E
T ss_pred --------HHhcCCCEEEeCCCCCHHHHHHHHHHHHHHhCCCCce
Confidence 02578999999999874 556788999999988843
No 266
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=97.33 E-value=0.0024 Score=57.26 Aligned_cols=105 Identities=17% Similarity=0.241 Sum_probs=79.4
Q ss_pred hhcCCC-cEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371 55 LIKGGE-LFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV 133 (222)
Q Consensus 55 ~~~~~~-~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 133 (222)
++++-. +++-+|||+-.++..+-..++..|+-+|+|+-.++.+..... .....+.+...+.....+
T Consensus 44 ~~~p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~---~~~~~~~~~~~d~~~l~f---------- 110 (482)
T KOG2352|consen 44 YLSPSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNA---KERPEMQMVEMDMDQLVF---------- 110 (482)
T ss_pred hhchhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccc---cCCcceEEEEecchhccC----------
Confidence 355666 999999999999999988889999999999998888765432 222345666666665544
Q ss_pred hccccccccCCCCCCCeeEEEecccccc-------------HHHHHHHHHHcccCCeEEEEecC
Q 047371 134 EYLSSHEIRGISETEEYDVVIANILLNP-------------LPQLADHIVSYAKPGAVVGISGI 184 (222)
Q Consensus 134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~-------------~~~~l~~~~~~LkpgG~l~~~~~ 184 (222)
++++||+++.-+.++. ..+.+.++++.+++||..+...+
T Consensus 111 ------------edESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 111 ------------EDESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred ------------CCcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 7888999998665543 33468999999999999776444
No 267
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=97.26 E-value=0.004 Score=50.13 Aligned_cols=107 Identities=17% Similarity=0.181 Sum_probs=56.3
Q ss_pred CCCcEEEEccCCCHHHHHHHH----h-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccc
Q 047371 58 GGELFLDYGTGSGILGIAAIK----F-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGV 132 (222)
Q Consensus 58 ~~~~vLD~G~G~G~~~~~la~----~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 132 (222)
+++.|+|+|.-.|..++.+|. . +.++|+|+|++....+... ...+++. +++++..++..... .+..+
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a--~e~hp~~-~rI~~i~Gds~d~~-----~~~~v 103 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKA--IESHPMS-PRITFIQGDSIDPE-----IVDQV 103 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-G--GGG-----TTEEEEES-SSSTH-----HHHTS
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHH--Hhhcccc-CceEEEECCCCCHH-----HHHHH
Confidence 588999999999988887664 2 5689999999765443322 2234443 58999998875442 11111
Q ss_pred hhccccccccCCCCCCCeeEEEecc--ccccHHHHHHHHHHcccCCeEEEE
Q 047371 133 VEYLSSHEIRGISETEEYDVVIANI--LLNPLPQLADHIVSYAKPGAVVGI 181 (222)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~D~v~~~~--~~~~~~~~l~~~~~~LkpgG~l~~ 181 (222)
........-.+|+.+. ...+....++....++++|+++++
T Consensus 104 ---------~~~~~~~~~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IV 145 (206)
T PF04989_consen 104 ---------RELASPPHPVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIV 145 (206)
T ss_dssp ---------GSS----SSEEEEESS----SSHHHHHHHHHHT--TT-EEEE
T ss_pred ---------HHhhccCCceEEEECCCccHHHHHHHHHHhCccCCCCCEEEE
Confidence 1111233445666543 234566778889999999999998
No 268
>PHA01634 hypothetical protein
Probab=97.25 E-value=0.0017 Score=48.16 Aligned_cols=49 Identities=18% Similarity=0.131 Sum_probs=44.7
Q ss_pred CCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCC
Q 047371 58 GGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNI 106 (222)
Q Consensus 58 ~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~ 106 (222)
.+++|+|+|++-|..++..+..|+..|+++|.++...+..+.+++.+.+
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI 76 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNI 76 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhhee
Confidence 5899999999999999999888999999999999999999998876654
No 269
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.23 E-value=0.00054 Score=52.85 Aligned_cols=122 Identities=15% Similarity=0.178 Sum_probs=75.9
Q ss_pred CCCcEEEEccCC-CHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371 58 GGELFLDYGTGS-GILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY 135 (222)
Q Consensus 58 ~~~~vLD~G~G~-G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 135 (222)
.|.+|+++|.|- |.-++++|.. +...|...|-++..++..++....+-.+ ..+- ..+..... ..
T Consensus 29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s--~~ts--c~vlrw~~--~~-------- 94 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMAS--SLTS--CCVLRWLI--WG-------- 94 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhccccc--ccce--ehhhHHHH--hh--------
Confidence 378999999996 5556666654 6678999999999999998876544222 1111 11100000 00
Q ss_pred cccccccCCCCCCCeeEEEecccc---ccHHHHHHHHHHcccCCeEEEEecC-CCCcHHHHHHHHHh
Q 047371 136 LSSHEIRGISETEEYDVVIANILL---NPLPQLADHIVSYAKPGAVVGISGI-LSEQLPRIINRYSE 198 (222)
Q Consensus 136 ~~~~~~~~~~~~~~~D~v~~~~~~---~~~~~~l~~~~~~LkpgG~l~~~~~-~~~~~~~~~~~~~~ 198 (222)
.+.......||+|++.... ++-..+++.+.++|+|.|..++... ...+..++.+....
T Consensus 95 -----aqsq~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRRg~sL~kF~de~~~ 156 (201)
T KOG3201|consen 95 -----AQSQQEQHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRRGQSLQKFLDEVGT 156 (201)
T ss_pred -----hHHHHhhCcccEEEeccchhHHHHHHHHHHHHHHHhCcccceeEecCcccchHHHHHHHHHh
Confidence 0111245689999985433 2245689999999999999777433 34444555554443
No 270
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.14 E-value=0.0025 Score=51.97 Aligned_cols=122 Identities=13% Similarity=0.158 Sum_probs=80.1
Q ss_pred cCCCcEEEEccCCCHHHHHHHHh--C----C----CEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccc
Q 047371 57 KGGELFLDYGTGSGILGIAAIKF--G----A----AMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMN 126 (222)
Q Consensus 57 ~~~~~vLD~G~G~G~~~~~la~~--~----~----~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 126 (222)
..-++++|+++..|+++..+.+. . . ..|+++|+.+ ...+. .+.-..+|.+.... .+
T Consensus 40 ~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~-----------MaPI~--GV~qlq~DIT~~st-ae 105 (294)
T KOG1099|consen 40 EGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQP-----------MAPIE--GVIQLQGDITSAST-AE 105 (294)
T ss_pred hhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEeccc-----------CCccC--ceEEeecccCCHhH-HH
Confidence 44578999999999999998863 1 1 2399999977 23443 55566666655421 11
Q ss_pred cccccchhccccccccCCCCCCCeeEEEecccc-----ccHH---------HHHHHHHHcccCCeEEEEecCCCCcHHHH
Q 047371 127 ERVDGVVEYLSSHEIRGISETEEYDVVIANILL-----NPLP---------QLADHIVSYAKPGAVVGISGILSEQLPRI 192 (222)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~-----~~~~---------~~l~~~~~~LkpgG~l~~~~~~~~~~~~~ 192 (222)
.....+ ...+.|+|+|+..- |.+. ..+.....+|||||.++-.-+......-+
T Consensus 106 ~Ii~hf-------------ggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg~~tslL 172 (294)
T KOG1099|consen 106 AIIEHF-------------GGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRGRDTSLL 172 (294)
T ss_pred HHHHHh-------------CCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhccCchHHH
Confidence 111111 45689999997653 3322 24677889999999999876776666666
Q ss_pred HHHHHhhhhccee
Q 047371 193 INRYSEFLEDILV 205 (222)
Q Consensus 193 ~~~~~~~~~~~~~ 205 (222)
-..++.+|..+..
T Consensus 173 ysql~~ff~kv~~ 185 (294)
T KOG1099|consen 173 YSQLRKFFKKVTC 185 (294)
T ss_pred HHHHHHHhhceee
Confidence 6666666655544
No 271
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=97.12 E-value=0.00013 Score=58.49 Aligned_cols=89 Identities=15% Similarity=0.161 Sum_probs=62.2
Q ss_pred CCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcccc
Q 047371 59 GELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSS 138 (222)
Q Consensus 59 ~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (222)
+.++||+|+|.|.++..++.. ..+|++.|+|..|..+.++. +. + +. ...+..
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~-feevyATElS~tMr~rL~kk----~y---n--Vl-~~~ew~----------------- 164 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPT-FEEVYATELSWTMRDRLKKK----NY---N--VL-TEIEWL----------------- 164 (288)
T ss_pred CeeEEeccCCCcchhhhhcch-HHHHHHHHhhHHHHHHHhhc----CC---c--ee-eehhhh-----------------
Confidence 468999999999999988755 46799999999998887653 11 1 11 001111
Q ss_pred ccccCCCCCCCeeEEEeccccc---cHHHHHHHHHHcccC-CeEEEE
Q 047371 139 HEIRGISETEEYDVVIANILLN---PLPQLADHIVSYAKP-GAVVGI 181 (222)
Q Consensus 139 ~~~~~~~~~~~~D~v~~~~~~~---~~~~~l~~~~~~Lkp-gG~l~~ 181 (222)
..+-++|+|.|-..++ ..-.+++.++..|+| .|.+++
T Consensus 165 ------~t~~k~dli~clNlLDRc~~p~kLL~Di~~vl~psngrviv 205 (288)
T KOG3987|consen 165 ------QTDVKLDLILCLNLLDRCFDPFKLLEDIHLVLAPSNGRVIV 205 (288)
T ss_pred ------hcCceeehHHHHHHHHhhcChHHHHHHHHHHhccCCCcEEE
Confidence 1345799999844332 244689999999999 788776
No 272
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=97.03 E-value=0.0015 Score=57.73 Aligned_cols=60 Identities=23% Similarity=0.381 Sum_probs=53.0
Q ss_pred cEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccc
Q 047371 61 LFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTF 121 (222)
Q Consensus 61 ~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~ 121 (222)
.+||+|+|+|.+++++++.+...++++|.-..|.+.|++....+|.+ ++++++....+..
T Consensus 69 ~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~S-dkI~vInkrStev 128 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMS-DKINVINKRSTEV 128 (636)
T ss_pred EEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCc-cceeeecccccee
Confidence 58999999999999999998889999999999999999999999998 5888776655443
No 273
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=96.92 E-value=0.0033 Score=54.92 Aligned_cols=106 Identities=23% Similarity=0.352 Sum_probs=70.0
Q ss_pred cCCCcEEEEccCC-CHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371 57 KGGELFLDYGTGS-GILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE 134 (222)
Q Consensus 57 ~~~~~vLD~G~G~-G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 134 (222)
+++.+|+-+|||+ |.++..+++. +..+|+++|.++..++.|++......+. ....+ ... ...
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~-----~~~~~--~~~----~~~----- 230 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVV-----NPSED--DAG----AEI----- 230 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEee-----cCccc--cHH----HHH-----
Confidence 3455899999998 8887777764 7889999999999999998843221110 10000 000 000
Q ss_pred ccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCCCCc
Q 047371 135 YLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGILSEQ 188 (222)
Q Consensus 135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 188 (222)
........+|+++-... ....+..+.++++|+|.+.+.+.....
T Consensus 231 -------~~~t~g~g~D~vie~~G---~~~~~~~ai~~~r~gG~v~~vGv~~~~ 274 (350)
T COG1063 231 -------LELTGGRGADVVIEAVG---SPPALDQALEALRPGGTVVVVGVYGGE 274 (350)
T ss_pred -------HHHhCCCCCCEEEECCC---CHHHHHHHHHHhcCCCEEEEEeccCCc
Confidence 00112236999997544 456788999999999999997766544
No 274
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=96.90 E-value=0.0005 Score=57.95 Aligned_cols=97 Identities=20% Similarity=0.220 Sum_probs=66.7
Q ss_pred cCCCcEEEEccCCCHHHH-HHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371 57 KGGELFLDYGTGSGILGI-AAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY 135 (222)
Q Consensus 57 ~~~~~vLD~G~G~G~~~~-~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 135 (222)
-.+..|+|+-+|-|++++ .+...+++.|+++|.+|..++..+.++..+++. ++.....++-...
T Consensus 193 c~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~-~r~~i~~gd~R~~-------------- 257 (351)
T KOG1227|consen 193 CDGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVM-DRCRITEGDNRNP-------------- 257 (351)
T ss_pred cccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchH-HHHHhhhcccccc--------------
Confidence 357899999999999999 788889999999999999999999999887665 2333333332221
Q ss_pred cccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeE
Q 047371 136 LSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAV 178 (222)
Q Consensus 136 ~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~ 178 (222)
.+....|-|.....-. -++-=..+.++|||.|.
T Consensus 258 ---------~~~~~AdrVnLGLlPS-se~~W~~A~k~Lk~egg 290 (351)
T KOG1227|consen 258 ---------KPRLRADRVNLGLLPS-SEQGWPTAIKALKPEGG 290 (351)
T ss_pred ---------Cccccchheeeccccc-cccchHHHHHHhhhcCC
Confidence 1566677776543211 12222335667777765
No 275
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.88 E-value=0.008 Score=52.07 Aligned_cols=98 Identities=15% Similarity=0.208 Sum_probs=68.1
Q ss_pred hcCCCcEEEEccCC-CHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371 56 IKGGELFLDYGTGS-GILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE 134 (222)
Q Consensus 56 ~~~~~~vLD~G~G~-G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 134 (222)
++||++|+-.|+|. |.+++.+++.-..+|+++|.++..++.|++.-.. ..+...+.+... .
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd-------~~i~~~~~~~~~--------~--- 225 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGAD-------HVINSSDSDALE--------A--- 225 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCc-------EEEEcCCchhhH--------H---
Confidence 67899999999992 3677777774238999999999999999875322 112211221110 0
Q ss_pred ccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCCC
Q 047371 135 YLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGILS 186 (222)
Q Consensus 135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 186 (222)
-.+.||+++...+ ...++...+.|+++|.+++.+...
T Consensus 226 -----------~~~~~d~ii~tv~----~~~~~~~l~~l~~~G~~v~vG~~~ 262 (339)
T COG1064 226 -----------VKEIADAIIDTVG----PATLEPSLKALRRGGTLVLVGLPG 262 (339)
T ss_pred -----------hHhhCcEEEECCC----hhhHHHHHHHHhcCCEEEEECCCC
Confidence 1223999997664 466788889999999999977663
No 276
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.86 E-value=0.00094 Score=59.77 Aligned_cols=104 Identities=15% Similarity=0.218 Sum_probs=80.7
Q ss_pred CCcEEEEccCCCHHHHHHHHh--CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcc
Q 047371 59 GELFLDYGTGSGILGIAAIKF--GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYL 136 (222)
Q Consensus 59 ~~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (222)
+.+|||.-+++|.-++..++. +..++++.|.++.+++..+.|+..++.. +.+.....|+..++..
T Consensus 110 ~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~-~ive~~~~DA~~lM~~------------ 176 (525)
T KOG1253|consen 110 SLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVE-DIVEPHHSDANVLMYE------------ 176 (525)
T ss_pred cchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCch-hhcccccchHHHHHHh------------
Confidence 457999999999988877753 4578999999999999999999888765 4556666665544321
Q ss_pred ccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEe
Q 047371 137 SSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGIS 182 (222)
Q Consensus 137 ~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 182 (222)
.......||+|-.+| +.....+++.+.+.++.||.+.++
T Consensus 177 ------~~~~~~~FDvIDLDP-yGs~s~FLDsAvqav~~gGLL~vT 215 (525)
T KOG1253|consen 177 ------HPMVAKFFDVIDLDP-YGSPSPFLDSAVQAVRDGGLLCVT 215 (525)
T ss_pred ------ccccccccceEecCC-CCCccHHHHHHHHHhhcCCEEEEE
Confidence 111357899999876 555678999999999999999984
No 277
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=96.82 E-value=0.0035 Score=50.62 Aligned_cols=59 Identities=25% Similarity=0.264 Sum_probs=41.7
Q ss_pred hHHHHHHHHhh---h--cCCCcEEEEccCCCHHHHHHHHh---CCCEEEEEeCChHHHHHHHHHHHh
Q 047371 45 TKLCLLLLQSL---I--KGGELFLDYGTGSGILGIAAIKF---GAAMFVGVDIDPQVIKSAHQNAAL 103 (222)
Q Consensus 45 ~~~~~~~l~~~---~--~~~~~vLD~G~G~G~~~~~la~~---~~~~v~gvD~s~~~l~~a~~~~~~ 103 (222)
.++..+++++- . ..+-+++|.+||+|++.-.+.-. ...+|+|.|+++.+++.|++|+..
T Consensus 33 VRLAsEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~L 99 (246)
T PF11599_consen 33 VRLASEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSL 99 (246)
T ss_dssp HHHHHHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhh
Confidence 35556666544 2 12358999999999987776643 246899999999999999999863
No 278
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=96.81 E-value=0.01 Score=50.14 Aligned_cols=108 Identities=23% Similarity=0.256 Sum_probs=79.9
Q ss_pred hcCCCcEEEEccCCCHHHHHHHHhC-CCEEEEEeCChHHHHHHHHHHHh--cCCCCCceeEEecCCcccccccccccccc
Q 047371 56 IKGGELFLDYGTGSGILGIAAIKFG-AAMFVGVDIDPQVIKSAHQNAAL--NNIGPKKIKLHLVPDRTFTASMNERVDGV 132 (222)
Q Consensus 56 ~~~~~~vLD~G~G~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 132 (222)
+...+.++-+|.|.|.+....++++ ..++.-+|++...++..++.... .+.+.+++....+|.-.+. ..+
T Consensus 119 ~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl-------~~~ 191 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFL-------EDL 191 (337)
T ss_pred CCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHH-------HHh
Confidence 3457889999999999988777653 46899999999999999988763 4455567878777654331 111
Q ss_pred hhccccccccCCCCCCCeeEEEec--ccccc-----HHHHHHHHHHcccCCeEEEEec
Q 047371 133 VEYLSSHEIRGISETEEYDVVIAN--ILLNP-----LPQLADHIVSYAKPGAVVGISG 183 (222)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~D~v~~~--~~~~~-----~~~~l~~~~~~LkpgG~l~~~~ 183 (222)
+.++||+|+.. .|..+ ...+.+.+.+.||++|++++..
T Consensus 192 -------------~~~~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 192 -------------KENPFDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred -------------ccCCceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 57889999963 23332 3457899999999999999853
No 279
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=96.79 E-value=0.04 Score=46.16 Aligned_cols=114 Identities=22% Similarity=0.188 Sum_probs=62.5
Q ss_pred CcEEEEccCCC--HHHHHHHH--hCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccc-cccccchh
Q 047371 60 ELFLDYGTGSG--ILGIAAIK--FGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMN-ERVDGVVE 134 (222)
Q Consensus 60 ~~vLD~G~G~G--~~~~~la~--~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~~ 134 (222)
..+||+|||-= ...-.+++ .+.++|+-+|.+|-.+..++..+..+.- .+..++..|......=+. .....++|
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~--g~t~~v~aD~r~p~~iL~~p~~~~~lD 147 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR--GRTAYVQADLRDPEAILAHPEVRGLLD 147 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT--SEEEEEE--TT-HHHHHCSHHHHCC--
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC--ccEEEEeCCCCCHHHHhcCHHHHhcCC
Confidence 47999999952 23333443 4778999999999999999887765431 247788888755421000 01112222
Q ss_pred ccccccccCCCCCCCeeEEEecccccc------HHHHHHHHHHcccCCeEEEEecCCCC
Q 047371 135 YLSSHEIRGISETEEYDVVIANILLNP------LPQLADHIVSYAKPGAVVGISGILSE 187 (222)
Q Consensus 135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~------~~~~l~~~~~~LkpgG~l~~~~~~~~ 187 (222)
.++++-+++ ...+++ ...++..+...|.||.++.++....+
T Consensus 148 -----------~~rPVavll-~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d 194 (267)
T PF04672_consen 148 -----------FDRPVAVLL-VAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDD 194 (267)
T ss_dssp -----------TTS--EEEE-CT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-T
T ss_pred -----------CCCCeeeee-eeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCC
Confidence 244554444 444444 45689999999999999999866544
No 280
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.76 E-value=0.0086 Score=51.22 Aligned_cols=106 Identities=19% Similarity=0.201 Sum_probs=68.0
Q ss_pred hcCCCcEEEEccCC-CHHHHHHHH-hCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371 56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV 133 (222)
Q Consensus 56 ~~~~~~vLD~G~G~-G~~~~~la~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 133 (222)
+++|.++|-+|+|+ |..+...|+ .+..+|+.+|+++..++.|++ + |.. .+....... .. +...+++
T Consensus 167 vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~---Ga~--~~~~~~~~~-~~-----~~~~~~v 234 (354)
T KOG0024|consen 167 VKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-F---GAT--VTDPSSHKS-SP-----QELAELV 234 (354)
T ss_pred cccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-h---CCe--EEeeccccc-cH-----HHHHHHH
Confidence 77899999999998 777776666 488999999999999999998 3 321 111111100 00 1111111
Q ss_pred hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecC
Q 047371 134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGI 184 (222)
Q Consensus 134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 184 (222)
+ ..-....+|+.+.-. .....++.+...+++||.+++.+.
T Consensus 235 ~--------~~~g~~~~d~~~dCs---G~~~~~~aai~a~r~gGt~vlvg~ 274 (354)
T KOG0024|consen 235 E--------KALGKKQPDVTFDCS---GAEVTIRAAIKATRSGGTVVLVGM 274 (354)
T ss_pred H--------hhccccCCCeEEEcc---CchHHHHHHHHHhccCCEEEEecc
Confidence 1 000223488888633 344667778889999999888654
No 281
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=96.75 E-value=0.023 Score=52.02 Aligned_cols=123 Identities=20% Similarity=0.181 Sum_probs=79.3
Q ss_pred cCCcchhHHHHHHHHhhhc----CCCcEEEEccCCCHHHHHHHHh---C--CCEEEEEeCChHHHHHHHHHHHhcCCCCC
Q 047371 39 TGEHATTKLCLLLLQSLIK----GGELFLDYGTGSGILGIAAIKF---G--AAMFVGVDIDPQVIKSAHQNAALNNIGPK 109 (222)
Q Consensus 39 ~~~~~~~~~~~~~l~~~~~----~~~~vLD~G~G~G~~~~~la~~---~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~ 109 (222)
.|...+++.+.+++...+. ++..+.|..||+|.+.....+. + ..+++|.+..+.+...++.++..++...+
T Consensus 194 ~g~~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~ 273 (501)
T TIGR00497 194 GGEFFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYA 273 (501)
T ss_pred CceeeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCcc
Confidence 4455677777777766532 4578999999999987754431 1 25699999999999999998876665422
Q ss_pred ceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecccccc----------------------------
Q 047371 110 KIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP---------------------------- 161 (222)
Q Consensus 110 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~---------------------------- 161 (222)
.......+...- ..+....+||++++|||+..
T Consensus 274 t~~~~~~dtl~~--------------------~d~~~~~~~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~ 333 (501)
T TIGR00497 274 NFNIINADTLTT--------------------KEWENENGFEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKA 333 (501)
T ss_pred ccCcccCCcCCC--------------------ccccccccCCEEeecCCcccccccccccccccccchhcccCCCCCchh
Confidence 222222221110 00113456899888887521
Q ss_pred HHHHHHHHHHcccCCeEEEE
Q 047371 162 LPQLADHIVSYAKPGAVVGI 181 (222)
Q Consensus 162 ~~~~l~~~~~~LkpgG~l~~ 181 (222)
-..++.++...|++||...+
T Consensus 334 ~~afi~h~~~~L~~gG~~ai 353 (501)
T TIGR00497 334 DLAFVLHALYVLGQEGTAAI 353 (501)
T ss_pred hHHHHHHHHHhcCCCCeEEE
Confidence 01257888899999997554
No 282
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=96.72 E-value=0.0057 Score=51.62 Aligned_cols=72 Identities=15% Similarity=0.163 Sum_probs=52.7
Q ss_pred cEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcccccc
Q 047371 61 LFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHE 140 (222)
Q Consensus 61 ~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (222)
+++|++||.|.++.-+.+.+...+.++|+++.+++..+.|.... ....|...+...
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~~--------~~~~Di~~~~~~---------------- 57 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPNK--------LIEGDITKIDEK---------------- 57 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCCC--------CccCccccCchh----------------
Confidence 68999999999988888778888999999999998888765321 233444333110
Q ss_pred ccCCCC-CCCeeEEEecccccc
Q 047371 141 IRGISE-TEEYDVVIANILLNP 161 (222)
Q Consensus 141 ~~~~~~-~~~~D~v~~~~~~~~ 161 (222)
. ...+|+++..+|+..
T Consensus 58 -----~~~~~~D~l~~gpPCq~ 74 (275)
T cd00315 58 -----DFIPDIDLLTGGFPCQP 74 (275)
T ss_pred -----hcCCCCCEEEeCCCChh
Confidence 1 346999999998754
No 283
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=96.49 E-value=0.0027 Score=57.18 Aligned_cols=93 Identities=16% Similarity=0.143 Sum_probs=59.3
Q ss_pred cEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcccccc
Q 047371 61 LFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHE 140 (222)
Q Consensus 61 ~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (222)
.|+|+.+|.|.++..|...+ |..+..-|..-...-..+...|+- .+-..++.. |..
T Consensus 368 NVMDMnAg~GGFAAAL~~~~---VWVMNVVP~~~~ntL~vIydRGLI--G~yhDWCE~--fsT----------------- 423 (506)
T PF03141_consen 368 NVMDMNAGYGGFAAALIDDP---VWVMNVVPVSGPNTLPVIYDRGLI--GVYHDWCEA--FST----------------- 423 (506)
T ss_pred eeeeecccccHHHHHhccCC---ceEEEecccCCCCcchhhhhcccc--hhccchhhc--cCC-----------------
Confidence 69999999999999987654 455554443111111122233332 111122211 111
Q ss_pred ccCCCCCCCeeEEEecccccc------HHHHHHHHHHcccCCeEEEEe
Q 047371 141 IRGISETEEYDVVIANILLNP------LPQLADHIVSYAKPGAVVGIS 182 (222)
Q Consensus 141 ~~~~~~~~~~D~v~~~~~~~~------~~~~l~~~~~~LkpgG~l~~~ 182 (222)
-..+||++.++..+.. +.+++-++-|+|+|||.+++-
T Consensus 424 -----YPRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiR 466 (506)
T PF03141_consen 424 -----YPRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIR 466 (506)
T ss_pred -----CCcchhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEe
Confidence 4778999999887765 456899999999999999995
No 284
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=96.42 E-value=0.069 Score=44.41 Aligned_cols=139 Identities=10% Similarity=0.029 Sum_probs=78.2
Q ss_pred CcEEEEccCCCHHHHHHHH----h--CCCEEEEEeCCh--------------------------HHHHHHHHHHHhcCCC
Q 047371 60 ELFLDYGTGSGILGIAAIK----F--GAAMFVGVDIDP--------------------------QVIKSAHQNAALNNIG 107 (222)
Q Consensus 60 ~~vLD~G~G~G~~~~~la~----~--~~~~v~gvD~s~--------------------------~~l~~a~~~~~~~~~~ 107 (222)
-.|+|.||-.|..++.++. + ...++++.|.-. ..++..++++...++.
T Consensus 76 GdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~gl~ 155 (248)
T PF05711_consen 76 GDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYGLL 155 (248)
T ss_dssp SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTTTS
T ss_pred eEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcCCC
Confidence 3699999999987665432 2 245688887533 1345555565555554
Q ss_pred CCceeEEecCCcccccccccccccchhccccccccCCCCCCCeeEEEecc-ccccHHHHHHHHHHcccCCeEEEEecCCC
Q 047371 108 PKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANI-LLNPLPQLADHIVSYAKPGAVVGISGILS 186 (222)
Q Consensus 108 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~-~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 186 (222)
.+++.++.+....... . .+..++-++.++. .+.+....|+.++..|.|||++++.+...
T Consensus 156 ~~~v~~vkG~F~dTLp-------~-------------~p~~~IAll~lD~DlYesT~~aLe~lyprl~~GGiIi~DDY~~ 215 (248)
T PF05711_consen 156 DDNVRFVKGWFPDTLP-------D-------------APIERIALLHLDCDLYESTKDALEFLYPRLSPGGIIIFDDYGH 215 (248)
T ss_dssp STTEEEEES-HHHHCC-------C--------------TT--EEEEEE---SHHHHHHHHHHHGGGEEEEEEEEESSTTT
T ss_pred cccEEEECCcchhhhc-------c-------------CCCccEEEEEEeccchHHHHHHHHHHHhhcCCCeEEEEeCCCC
Confidence 4577777665432210 0 1445666666643 34456678999999999999999987766
Q ss_pred CcHHHHHHHHHhhhhcceecccCCceEeeccc
Q 047371 187 EQLPRIINRYSEFLEDILVSEKDDWRCVSGTK 218 (222)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~k 218 (222)
...++..+.+............=+|.++.++|
T Consensus 216 ~gcr~AvdeF~~~~gi~~~l~~id~~~v~w~k 247 (248)
T PF05711_consen 216 PGCRKAVDEFRAEHGITDPLHPIDWTGVYWRK 247 (248)
T ss_dssp HHHHHHHHHHHHHTT--S--EE-SSS-EEEE-
T ss_pred hHHHHHHHHHHHHcCCCCccEEecCceEEEec
Confidence 66666666665554444455556677776665
No 285
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=96.39 E-value=0.024 Score=46.88 Aligned_cols=81 Identities=20% Similarity=0.159 Sum_probs=53.2
Q ss_pred hcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371 56 IKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE 134 (222)
Q Consensus 56 ~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 134 (222)
.++..+|+|+|||---++..+... +...++|.|++..+++.....+...+.. .++...|...- .
T Consensus 103 ~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~---~~~~v~Dl~~~----------~-- 167 (251)
T PF07091_consen 103 IPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVP---HDARVRDLLSD----------P-- 167 (251)
T ss_dssp S---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-C---EEEEEE-TTTS----------H--
T ss_pred CCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCC---cceeEeeeecc----------C--
Confidence 445789999999999888866544 4569999999999999999888777753 44444443211 1
Q ss_pred ccccccccCCCCCCCeeEEEeccccccH
Q 047371 135 YLSSHEIRGISETEEYDVVIANILLNPL 162 (222)
Q Consensus 135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~~ 162 (222)
+....|+.+.-=.++.+
T Consensus 168 -----------~~~~~DlaLllK~lp~l 184 (251)
T PF07091_consen 168 -----------PKEPADLALLLKTLPCL 184 (251)
T ss_dssp -----------TTSEESEEEEET-HHHH
T ss_pred -----------CCCCcchhhHHHHHHHH
Confidence 56678999975444433
No 286
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=96.28 E-value=0.0032 Score=55.54 Aligned_cols=69 Identities=30% Similarity=0.475 Sum_probs=60.0
Q ss_pred HHhhhcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccc
Q 047371 52 LQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTF 121 (222)
Q Consensus 52 l~~~~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~ 121 (222)
+..+.++|..|.|++||.|-+++.++..+ +.|++.|+++++++..+.+++.+.+...++.....|+..+
T Consensus 243 lsg~fk~gevv~D~FaGvGPfa~Pa~kK~-crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~F 311 (495)
T KOG2078|consen 243 LSGLFKPGEVVCDVFAGVGPFALPAAKKG-CRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDF 311 (495)
T ss_pred HhhccCCcchhhhhhcCcCccccchhhcC-cEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHH
Confidence 33457899999999999999999998876 8999999999999999999998888766688888877554
No 287
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=96.11 E-value=0.061 Score=44.62 Aligned_cols=116 Identities=16% Similarity=0.135 Sum_probs=66.9
Q ss_pred CCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCC----CceeEE---ecCCccccccccccccc
Q 047371 59 GELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGP----KKIKLH---LVPDRTFTASMNERVDG 131 (222)
Q Consensus 59 ~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~----~~v~~~---~~~~~~~~~~~~~~~~~ 131 (222)
...||++|+|+|-.++.++.....+|+..|.... +...+.+...++... ..+... ++...... -
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~-~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~--------~ 157 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLLGAEVVLTDLPKV-VENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVS--------F 157 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHhcceeccCCchhh-HHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHh--------h
Confidence 4569999999998888888766688888888553 333333322222111 122222 22222111 0
Q ss_pred chhccccccccCCCCCCCeeEEEecccccc---HHHHHHHHHHcccCCeEEEEecCCCC-cHHHHHHHH
Q 047371 132 VVEYLSSHEIRGISETEEYDVVIANILLNP---LPQLADHIVSYAKPGAVVGISGILSE-QLPRIINRY 196 (222)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~-~~~~~~~~~ 196 (222)
+ ...++|+|++..+++. ...+...+..+|..+|.+++...... ...+....+
T Consensus 158 ~-------------~~~~~DlilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~~lr~~~~~~~~~~~ 213 (248)
T KOG2793|consen 158 R-------------LPNPFDLILASDVVYEEESFEGLVKTLAFLLAKDGTIFLAYPLRRDAAWEIEVLL 213 (248)
T ss_pred c-------------cCCcccEEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEEEecccchHHHHHHHH
Confidence 1 1222899998666543 56778888888899997666544433 333443333
No 288
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=95.98 E-value=0.025 Score=46.49 Aligned_cols=83 Identities=17% Similarity=0.228 Sum_probs=47.8
Q ss_pred cCCC--cEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHh--cCCC-----CCceeEEecCCccccccccc
Q 047371 57 KGGE--LFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAAL--NNIG-----PKKIKLHLVPDRTFTASMNE 127 (222)
Q Consensus 57 ~~~~--~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~--~~~~-----~~~v~~~~~~~~~~~~~~~~ 127 (222)
+++. +|||.-+|-|.=++.++..| ++|+++|-||......+..+.. ..-. ..++++...|...+..
T Consensus 72 k~~~~~~VLDaTaGLG~Da~vlA~~G-~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~---- 146 (234)
T PF04445_consen 72 KPGMRPSVLDATAGLGRDAFVLASLG-CKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLR---- 146 (234)
T ss_dssp BTTB---EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCC----
T ss_pred CCCCCCEEEECCCcchHHHHHHHccC-CeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHh----
Confidence 4553 89999999999999888887 5899999999765555443321 1111 1368888888765421
Q ss_pred ccccchhccccccccCCCCCCCeeEEEecccccc
Q 047371 128 RVDGVVEYLSSHEIRGISETEEYDVVIANILLNP 161 (222)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~ 161 (222)
.+.++||+|..+|++..
T Consensus 147 -----------------~~~~s~DVVY~DPMFp~ 163 (234)
T PF04445_consen 147 -----------------QPDNSFDVVYFDPMFPE 163 (234)
T ss_dssp -----------------CHSS--SEEEE--S---
T ss_pred -----------------hcCCCCCEEEECCCCCC
Confidence 15788999999999865
No 289
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=95.98 E-value=0.025 Score=45.12 Aligned_cols=34 Identities=15% Similarity=0.066 Sum_probs=26.2
Q ss_pred hcCCCcEEEEccCCCHHHHHHHHh--CCCEEEEEeC
Q 047371 56 IKGGELFLDYGTGSGILGIAAIKF--GAAMFVGVDI 89 (222)
Q Consensus 56 ~~~~~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~ 89 (222)
+++|.+|+|+-.|.|.++..++.. +.+.|++.--
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p 81 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVP 81 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecc
Confidence 678999999999999999988864 2345555433
No 290
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=95.91 E-value=0.061 Score=45.75 Aligned_cols=72 Identities=17% Similarity=0.198 Sum_probs=50.4
Q ss_pred cEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcccccc
Q 047371 61 LFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHE 140 (222)
Q Consensus 61 ~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (222)
+++|+.||.|.++.-+.+.+...+.++|+++.+.+..+.|.. .....|...+... .+
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~---------~~~~~Di~~~~~~------~l-------- 58 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP---------EVICGDITEIDPS------DL-------- 58 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT---------EEEESHGGGCHHH------HH--------
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc---------ccccccccccccc------cc--------
Confidence 689999999999998888888889999999998888888764 3455555444210 11
Q ss_pred ccCCCCCCCeeEEEecccccc
Q 047371 141 IRGISETEEYDVVIANILLNP 161 (222)
Q Consensus 141 ~~~~~~~~~~D~v~~~~~~~~ 161 (222)
+. .+|+++..+|+..
T Consensus 59 -----~~-~~D~l~ggpPCQ~ 73 (335)
T PF00145_consen 59 -----PK-DVDLLIGGPPCQG 73 (335)
T ss_dssp -----HH-T-SEEEEE---TT
T ss_pred -----cc-cceEEEeccCCce
Confidence 22 4899999988754
No 291
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=95.85 E-value=0.052 Score=44.73 Aligned_cols=100 Identities=20% Similarity=0.167 Sum_probs=66.7
Q ss_pred hcCCCcEEEEccCCCHHHHHHHHh--CCCEEEEEeCChHH----HHHHHHHHHhcCCCCCceeEEecCCccccccccccc
Q 047371 56 IKGGELFLDYGTGSGILGIAAIKF--GAAMFVGVDIDPQV----IKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERV 129 (222)
Q Consensus 56 ~~~~~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~s~~~----l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 129 (222)
++||.+||=+|+++|...-+.... +..-|+++|.++.. +..|+++ .|+--+..|+..... ..-
T Consensus 154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR--------tNiiPIiEDArhP~K--YRm- 222 (317)
T KOG1596|consen 154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR--------TNIIPIIEDARHPAK--YRM- 222 (317)
T ss_pred ecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc--------CCceeeeccCCCchh--eee-
Confidence 789999999999999877776654 55789999999864 3444433 244445555533210 000
Q ss_pred ccchhccccccccCCCCCCCeeEEEeccccccHHH-HHHHHHHcccCCeEEEEe
Q 047371 130 DGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQ-LADHIVSYAKPGAVVGIS 182 (222)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~-~l~~~~~~LkpgG~l~~~ 182 (222)
.-.-+|+|+++.+-..... ++-++...||+||.++++
T Consensus 223 ----------------lVgmVDvIFaDvaqpdq~RivaLNA~~FLk~gGhfvis 260 (317)
T KOG1596|consen 223 ----------------LVGMVDVIFADVAQPDQARIVALNAQYFLKNGGHFVIS 260 (317)
T ss_pred ----------------eeeeEEEEeccCCCchhhhhhhhhhhhhhccCCeEEEE
Confidence 1235899998765444333 456788899999999984
No 292
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=95.59 E-value=0.09 Score=44.96 Aligned_cols=136 Identities=17% Similarity=0.162 Sum_probs=70.9
Q ss_pred HHHHHHHHhhhcC------CCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEE---ec
Q 047371 46 KLCLLLLQSLIKG------GELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLH---LV 116 (222)
Q Consensus 46 ~~~~~~l~~~~~~------~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~---~~ 116 (222)
.-+.+-|..+.++ .-+||-.|||.|.++..++..+. ++-|-|.|--|+--....+..-..+ ..+.++ ..
T Consensus 132 kpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~-~~qGNEfSy~Mli~S~FiLN~~~~~-nq~~IYPfIh~ 209 (369)
T KOG2798|consen 132 KPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGF-KCQGNEFSYFMLICSSFILNYCKQE-NQFTIYPFIHQ 209 (369)
T ss_pred hhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcc-cccccHHHHHHHHHHHHHHHhhccC-CcEEEEeeeec
Confidence 3344555555544 44799999999999999999875 4567788777765444333211111 122211 11
Q ss_pred CC------cccc-ccccccc-----ccchhccccc-cccCCC----CCCCeeEEEeccccc---cHHHHHHHHHHcccCC
Q 047371 117 PD------RTFT-ASMNERV-----DGVVEYLSSH-EIRGIS----ETEEYDVVIANILLN---PLPQLADHIVSYAKPG 176 (222)
Q Consensus 117 ~~------~~~~-~~~~~~~-----~~~~~~~~~~-~~~~~~----~~~~~D~v~~~~~~~---~~~~~l~~~~~~Lkpg 176 (222)
-. ++++ .+.++.. -..--++-|. ++..+- ..+.+|+|+....++ .+-++++.+.++||||
T Consensus 210 ~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~G 289 (369)
T KOG2798|consen 210 YSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILKPG 289 (369)
T ss_pred cccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHHHhccCC
Confidence 00 1110 0000000 0000000010 000011 234699998765543 3567899999999999
Q ss_pred eEEEEec
Q 047371 177 AVVGISG 183 (222)
Q Consensus 177 G~l~~~~ 183 (222)
|+.+=.+
T Consensus 290 GvWiNlG 296 (369)
T KOG2798|consen 290 GVWINLG 296 (369)
T ss_pred cEEEecc
Confidence 9987633
No 293
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=95.48 E-value=0.12 Score=44.65 Aligned_cols=99 Identities=23% Similarity=0.290 Sum_probs=60.5
Q ss_pred hcCCCcEEEEccCC-CHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371 56 IKGGELFLDYGTGS-GILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV 133 (222)
Q Consensus 56 ~~~~~~vLD~G~G~-G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 133 (222)
..++++||-.|||. |..+..+++. +..+++++|.++..++.+++. |.. . .+...+ ..+ ...
T Consensus 167 ~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~l----Ga~--~-vi~~~~-~~~--------~~~- 229 (343)
T PRK09880 167 DLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREM----GAD--K-LVNPQN-DDL--------DHY- 229 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHc----CCc--E-EecCCc-ccH--------HHH-
Confidence 34688999888764 4555566664 555799999999988887652 321 1 111110 001 000
Q ss_pred hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecC
Q 047371 134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGI 184 (222)
Q Consensus 134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 184 (222)
. ...+.+|+++....- ...++.+.++++++|.+++.+.
T Consensus 230 --------~--~~~g~~D~vid~~G~---~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 230 --------K--AEKGYFDVSFEVSGH---PSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred --------h--ccCCCCCEEEECCCC---HHHHHHHHHHhhcCCEEEEEcc
Confidence 0 012358999864322 3467778889999999998654
No 294
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=95.46 E-value=0.12 Score=44.58 Aligned_cols=94 Identities=14% Similarity=0.229 Sum_probs=60.3
Q ss_pred hcCCCcEEEEccCC-CHHHHHHHH--hCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccc
Q 047371 56 IKGGELFLDYGTGS-GILGIAAIK--FGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGV 132 (222)
Q Consensus 56 ~~~~~~vLD~G~G~-G~~~~~la~--~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 132 (222)
+++|++||-+|||. |..+..+++ .+..+++++|.++..++.++. .+. . .. .+ .+.
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~----~-~~-~~--~~~---------- 218 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADE----T-YL-ID--DIP---------- 218 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCc----e-ee-hh--hhh----------
Confidence 46789999999865 455555554 345689999999988887764 121 0 10 00 010
Q ss_pred hhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecC
Q 047371 133 VEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGI 184 (222)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 184 (222)
....+|+++-...-......++...++++++|.+++.+.
T Consensus 219 -------------~~~g~d~viD~~G~~~~~~~~~~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 219 -------------EDLAVDHAFECVGGRGSQSAINQIIDYIRPQGTIGLMGV 257 (341)
T ss_pred -------------hccCCcEEEECCCCCccHHHHHHHHHhCcCCcEEEEEee
Confidence 122489998644321134578888999999999988654
No 295
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=95.08 E-value=0.24 Score=45.50 Aligned_cols=116 Identities=20% Similarity=0.287 Sum_probs=64.7
Q ss_pred CCCcEEEEccCC-CHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccc-cccccccchh
Q 047371 58 GGELFLDYGTGS-GILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTAS-MNERVDGVVE 134 (222)
Q Consensus 58 ~~~~vLD~G~G~-G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~ 134 (222)
++.+|+-+|||. |..++..++. | +.|+++|.+++.++.++.. |.. .+.+...+....... ......+..+
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lG-A~V~a~D~~~~rle~aesl----GA~--~v~i~~~e~~~~~~gya~~~s~~~~~ 236 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLG-AIVRAFDTRPEVAEQVESM----GAE--FLELDFEEEGGSGDGYAKVMSEEFIK 236 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHc----CCe--EEEeccccccccccchhhhcchhHHH
Confidence 688999999998 7777776665 6 4899999999999988762 321 111111110000000 0000000000
Q ss_pred ccccccccCCC-CCCCeeEEEecccccc--HHHH-HHHHHHcccCCeEEEEecC
Q 047371 135 YLSSHEIRGIS-ETEEYDVVIANILLNP--LPQL-ADHIVSYAKPGAVVGISGI 184 (222)
Q Consensus 135 ~~~~~~~~~~~-~~~~~D~v~~~~~~~~--~~~~-l~~~~~~LkpgG~l~~~~~ 184 (222)
.. ...+. ..+.+|+++....... -..+ .+++.+.+||||.++....
T Consensus 237 ~~----~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 237 AE----MALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HH----HHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 00 00000 1246999997554422 1234 5999999999999887544
No 296
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=94.99 E-value=0.084 Score=46.45 Aligned_cols=106 Identities=22% Similarity=0.396 Sum_probs=64.6
Q ss_pred hcCCCcEEEEccCC-CHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371 56 IKGGELFLDYGTGS-GILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV 133 (222)
Q Consensus 56 ~~~~~~vLD~G~G~-G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 133 (222)
+.++.+||..|||. |..+..+++. +..+++++|.++..++.+++.. +.. .+.....+ .+. ..
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~---~~~--vi~~~~~~--~~~----~~----- 245 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHL---GAE--TINFEEVD--DVV----EA----- 245 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC---CcE--EEcCCcch--HHH----HH-----
Confidence 56788999999887 7777777765 4446999999999888887642 110 11111100 010 00
Q ss_pred hccccccccCCCCCCCeeEEEeccccc------------------cHHHHHHHHHHcccCCeEEEEecC
Q 047371 134 EYLSSHEIRGISETEEYDVVIANILLN------------------PLPQLADHIVSYAKPGAVVGISGI 184 (222)
Q Consensus 134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~------------------~~~~~l~~~~~~LkpgG~l~~~~~ 184 (222)
+..+.....+|+++....-+ .....+..+.+.++++|.++..+.
T Consensus 246 -------l~~~~~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 246 -------LRELTGGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred -------HHHHcCCCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcC
Confidence 00111334689888743211 023467888999999999988543
No 297
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=94.65 E-value=0.15 Score=46.47 Aligned_cols=114 Identities=17% Similarity=0.249 Sum_probs=76.5
Q ss_pred hhHHHHHHHHhhhcCC-----CcEEEEccCCCHHHHHHH---Hh--CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeE
Q 047371 44 TTKLCLLLLQSLIKGG-----ELFLDYGTGSGILGIAAI---KF--GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKL 113 (222)
Q Consensus 44 ~~~~~~~~l~~~~~~~-----~~vLD~G~G~G~~~~~la---~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~ 113 (222)
+.+++...|...++.+ ..|+-+|+|-|-+..... +. ..-+++++|-+|.++-..+. ....... .++++
T Consensus 348 Yq~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~-~~Vti 425 (649)
T KOG0822|consen 348 YQQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWD-NRVTI 425 (649)
T ss_pred HHHHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhhc-CeeEE
Confidence 5677777777664433 257888999996655433 22 23579999999998877765 2233333 57888
Q ss_pred EecCCcccccccccccccchhccccccccCCCCCCCeeEEEeccccc-----cHHHHHHHHHHcccCCeEEEE
Q 047371 114 HLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLN-----PLPQLADHIVSYAKPGAVVGI 181 (222)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~-----~~~~~l~~~~~~LkpgG~l~~ 181 (222)
+..|...+.. +..+.|++++-..-. .-.+-+.-+-+.|||+|+.+=
T Consensus 426 i~~DMR~w~a----------------------p~eq~DI~VSELLGSFGDNELSPECLDG~q~fLkpdgIsIP 476 (649)
T KOG0822|consen 426 ISSDMRKWNA----------------------PREQADIIVSELLGSFGDNELSPECLDGAQKFLKPDGISIP 476 (649)
T ss_pred EeccccccCC----------------------chhhccchHHHhhccccCccCCHHHHHHHHhhcCCCceEcc
Confidence 8887655531 347899999754321 135678999999999977653
No 298
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=94.53 E-value=0.38 Score=40.93 Aligned_cols=89 Identities=19% Similarity=0.164 Sum_probs=56.6
Q ss_pred cCCCcEEEEccCC-CHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371 57 KGGELFLDYGTGS-GILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE 134 (222)
Q Consensus 57 ~~~~~vLD~G~G~-G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 134 (222)
.+++++|-+|||. |.++..+++. +...++++|.++..++.|... .. + +....
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~----~~------i---~~~~~------------- 196 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY----EV------L---DPEKD------------- 196 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc----cc------c---Chhhc-------------
Confidence 3577899888765 5666666654 655688889888776655431 10 0 10000
Q ss_pred ccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCC
Q 047371 135 YLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGIL 185 (222)
Q Consensus 135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 185 (222)
....+|+++-...- ...++.+.+.++++|.+++.+..
T Consensus 197 -----------~~~g~Dvvid~~G~---~~~~~~~~~~l~~~G~iv~~G~~ 233 (308)
T TIGR01202 197 -----------PRRDYRAIYDASGD---PSLIDTLVRRLAKGGEIVLAGFY 233 (308)
T ss_pred -----------cCCCCCEEEECCCC---HHHHHHHHHhhhcCcEEEEEeec
Confidence 12358998864432 34677888899999999986543
No 299
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=94.43 E-value=0.11 Score=48.25 Aligned_cols=122 Identities=17% Similarity=0.168 Sum_probs=72.0
Q ss_pred hcCCCcEEEEccCCCHHHHHHHHh-C-CCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371 56 IKGGELFLDYGTGSGILGIAAIKF-G-AAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV 133 (222)
Q Consensus 56 ~~~~~~vLD~G~G~G~~~~~la~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 133 (222)
++++..|||+||.+|.+...+.+. | .+-|+|+|+-|-. .+. ++.....+++.-.++
T Consensus 42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pik-----------p~~--~c~t~v~dIttd~cr--------- 99 (780)
T KOG1098|consen 42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIK-----------PIP--NCDTLVEDITTDECR--------- 99 (780)
T ss_pred ccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecc-----------cCC--ccchhhhhhhHHHHH---------
Confidence 778999999999999999988875 3 4679999997621 111 221222222111110
Q ss_pred hccccccccCCCCCCCeeEEEeccccc----cH----------HHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHhh
Q 047371 134 EYLSSHEIRGISETEEYDVVIANILLN----PL----------PQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSEF 199 (222)
Q Consensus 134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~----~~----------~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~ 199 (222)
..++.+...-+.|+|+.+..-+ +. ...+.-+...|..||.++...+.+..-.-+...+.+.
T Consensus 100 -----~~l~k~l~t~~advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fvtkvfrs~dy~~ll~v~~qL 174 (780)
T KOG1098|consen 100 -----SKLRKILKTWKADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFVTKVFRSEDYNGLLRVFGQL 174 (780)
T ss_pred -----HHHHHHHHhCCCcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCccccccccCCcchHHHHHHHHH
Confidence 0011112344568888754321 11 1246777888999999777666666655555555555
Q ss_pred hhcce
Q 047371 200 LEDIL 204 (222)
Q Consensus 200 ~~~~~ 204 (222)
|.-++
T Consensus 175 f~kv~ 179 (780)
T KOG1098|consen 175 FKKVE 179 (780)
T ss_pred HHHHH
Confidence 44333
No 300
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=94.39 E-value=0.41 Score=40.41 Aligned_cols=101 Identities=20% Similarity=0.198 Sum_probs=70.2
Q ss_pred CCCcEEEEccCCCHHHHHHH--HhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371 58 GGELFLDYGTGSGILGIAAI--KFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY 135 (222)
Q Consensus 58 ~~~~vLD~G~G~G~~~~~la--~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 135 (222)
.|+.|+-+| ..-..++.++ .. +.++..+|+++..++-..+.+...+++ ++....-|..+.-. +.
T Consensus 152 ~gK~I~vvG-DDDLtsia~aLt~m-pk~iaVvDIDERli~fi~k~aee~g~~--~ie~~~~Dlr~plp------e~---- 217 (354)
T COG1568 152 EGKEIFVVG-DDDLTSIALALTGM-PKRIAVVDIDERLIKFIEKVAEELGYN--NIEAFVFDLRNPLP------ED---- 217 (354)
T ss_pred CCCeEEEEc-CchhhHHHHHhcCC-CceEEEEechHHHHHHHHHHHHHhCcc--chhheeehhcccCh------HH----
Confidence 478899998 4444444433 34 478999999999999999998888876 56555555433210 00
Q ss_pred cccccccCCCCCCCeeEEEecccccc--HHHHHHHHHHcccCC---eEEEEe
Q 047371 136 LSSHEIRGISETEEYDVVIANILLNP--LPQLADHIVSYAKPG---AVVGIS 182 (222)
Q Consensus 136 ~~~~~~~~~~~~~~~D~v~~~~~~~~--~~~~l~~~~~~Lkpg---G~l~~~ 182 (222)
-.++||+.+.+||... +..++..-...||-. |++.++
T Consensus 218 ----------~~~kFDvfiTDPpeTi~alk~FlgRGI~tLkg~~~aGyfgiT 259 (354)
T COG1568 218 ----------LKRKFDVFITDPPETIKALKLFLGRGIATLKGEGCAGYFGIT 259 (354)
T ss_pred ----------HHhhCCeeecCchhhHHHHHHHHhccHHHhcCCCccceEeee
Confidence 2568999999998653 556676667777777 777775
No 301
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=94.33 E-value=0.43 Score=41.05 Aligned_cols=92 Identities=16% Similarity=0.075 Sum_probs=58.8
Q ss_pred hcCCCcEEEEccCC-CHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371 56 IKGGELFLDYGTGS-GILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE 134 (222)
Q Consensus 56 ~~~~~~vLD~G~G~-G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 134 (222)
+++|++||-.|+|. |..+..+++....++++++.++..++.+++ .|.. .+ + +....
T Consensus 163 ~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~----~Ga~--~v-i---~~~~~------------- 219 (329)
T TIGR02822 163 LPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALA----LGAA--SA-G---GAYDT------------- 219 (329)
T ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH----hCCc--ee-c---ccccc-------------
Confidence 56789999999754 445555666534579999999988777765 3332 11 1 10000
Q ss_pred ccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecC
Q 047371 135 YLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGI 184 (222)
Q Consensus 135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 184 (222)
..+.+|+++..... ...+....+.|+++|.+++.+.
T Consensus 220 -----------~~~~~d~~i~~~~~---~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 220 -----------PPEPLDAAILFAPA---GGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred -----------CcccceEEEECCCc---HHHHHHHHHhhCCCcEEEEEec
Confidence 12347876643222 3568888899999999988665
No 302
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=94.31 E-value=0.2 Score=43.30 Aligned_cols=114 Identities=17% Similarity=0.227 Sum_probs=72.4
Q ss_pred CCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcccc
Q 047371 59 GELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSS 138 (222)
Q Consensus 59 ~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (222)
..+++|+.||.|.+..-+...+..-+.++|+++.+++..+.|... -.+...|...+..
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~-------~~~~~~di~~~~~--------------- 60 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH-------GDIILGDIKELDG--------------- 60 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC-------CceeechHhhcCh---------------
Confidence 357999999999999877777888899999999998888877542 1133333322211
Q ss_pred ccccCCCCCCCeeEEEeccccccHH----------------HHHHHHHHcccCCeEEEEe---cCCCC---cHHHHHHHH
Q 047371 139 HEIRGISETEEYDVVIANILLNPLP----------------QLADHIVSYAKPGAVVGIS---GILSE---QLPRIINRY 196 (222)
Q Consensus 139 ~~~~~~~~~~~~D~v~~~~~~~~~~----------------~~l~~~~~~LkpgG~l~~~---~~~~~---~~~~~~~~~ 196 (222)
..+ ....+|+++..+|+.... --+..+...++| -++++. ++... ....+.+.+
T Consensus 61 ---~~~-~~~~~DvligGpPCQ~FS~aG~r~~~~D~R~~L~~~~~r~I~~~~P-~~fv~ENV~gl~~~~~~~~~~i~~~L 135 (328)
T COG0270 61 ---EAL-RKSDVDVLIGGPPCQDFSIAGKRRGYDDPRGSLFLEFIRLIEQLRP-KFFVLENVKGLLSSKGQTFDEIKKEL 135 (328)
T ss_pred ---hhc-cccCCCEEEeCCCCcchhhcCcccCCcCccceeeHHHHHHHHhhCC-CEEEEecCchHHhcCchHHHHHHHHH
Confidence 000 111789999999986521 124567777888 455552 22232 555566665
Q ss_pred Hhh
Q 047371 197 SEF 199 (222)
Q Consensus 197 ~~~ 199 (222)
++.
T Consensus 136 ~~~ 138 (328)
T COG0270 136 EEL 138 (328)
T ss_pred HHc
Confidence 553
No 303
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.28 E-value=0.24 Score=43.12 Aligned_cols=119 Identities=18% Similarity=0.115 Sum_probs=64.1
Q ss_pred CCcEEEEccCCCHHHHHHHHh-C-CCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcc
Q 047371 59 GELFLDYGTGSGILGIAAIKF-G-AAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYL 136 (222)
Q Consensus 59 ~~~vLD~G~G~G~~~~~la~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (222)
..+|||+|.|.|.-...+-.. + ...++.++.|+..-+.... +..+-.. ........++. +.+
T Consensus 114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~t-l~~nv~t-~~td~r~s~vt--------------~dR 177 (484)
T COG5459 114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDT-LAENVST-EKTDWRASDVT--------------EDR 177 (484)
T ss_pred cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHH-HHhhccc-ccCCCCCCccc--------------hhc
Confidence 467999999999766555442 2 2456777887754443332 2221111 11111111110 000
Q ss_pred ccccccCCCCCCCeeEEEe-cccccc-----HHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHh
Q 047371 137 SSHEIRGISETEEYDVVIA-NILLNP-----LPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSE 198 (222)
Q Consensus 137 ~~~~~~~~~~~~~~D~v~~-~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~ 198 (222)
. .+.....|++++. +..++. +-..++.+..++.|||.+++.+-...-.-++......
T Consensus 178 l-----~lp~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~Gf~~I~rAR~ 240 (484)
T COG5459 178 L-----SLPAADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPAGFERILRARQ 240 (484)
T ss_pred c-----CCCccceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCchhHHHHHHHHH
Confidence 0 1113445676665 222221 3347899999999999999987666555555544443
No 304
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=94.25 E-value=0.042 Score=40.25 Aligned_cols=92 Identities=20% Similarity=0.320 Sum_probs=59.5
Q ss_pred CCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccccccccCCCCC
Q 047371 68 GSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISET 147 (222)
Q Consensus 68 G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (222)
|.|..+..+++....+++++|.++..++.+++. +.. ..+. .....+. +.+ ..+.+.
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~----Ga~---~~~~-~~~~~~~----~~i------------~~~~~~ 56 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKEL----GAD---HVID-YSDDDFV----EQI------------RELTGG 56 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT----TES---EEEE-TTTSSHH----HHH------------HHHTTT
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHhh----ccc---cccc-ccccccc----ccc------------cccccc
Confidence 347777777776338999999999998888763 321 1121 1111110 111 111234
Q ss_pred CCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCCC
Q 047371 148 EEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGILS 186 (222)
Q Consensus 148 ~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 186 (222)
..+|+++-... ....++...++++++|.+++.+...
T Consensus 57 ~~~d~vid~~g---~~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 57 RGVDVVIDCVG---SGDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp SSEEEEEESSS---SHHHHHHHHHHEEEEEEEEEESSTS
T ss_pred ccceEEEEecC---cHHHHHHHHHHhccCCEEEEEEccC
Confidence 57999997543 2578889999999999999987664
No 305
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=94.06 E-value=0.15 Score=43.81 Aligned_cols=98 Identities=20% Similarity=0.176 Sum_probs=60.0
Q ss_pred hhHHHHHHHHhhhcCCC-c---EEEEccCCCHHHHHHH-HhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCC
Q 047371 44 TTKLCLLLLQSLIKGGE-L---FLDYGTGSGILGIAAI-KFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPD 118 (222)
Q Consensus 44 ~~~~~~~~l~~~~~~~~-~---vLD~G~G~G~~~~~la-~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~ 118 (222)
+-+++.++|..- +.++ + -+|+|+|...+--.+. +......+++|++...+..|+.+...++++ +.+..+....
T Consensus 85 YihwI~DLLss~-q~~k~~i~~GiDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~ls-s~ikvV~~~~ 162 (419)
T KOG2912|consen 85 YIHWIEDLLSSQ-QSDKSTIRRGIDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLS-SLIKVVKVEP 162 (419)
T ss_pred hHHHHHHHhhcc-cCCCcceeeeeeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccccc-cceeeEEecc
Confidence 445555555433 2232 2 3688777654332222 222356899999999999999999999987 4666665533
Q ss_pred cccccccccccccchhccccccccCCC--CCCCeeEEEeccccc
Q 047371 119 RTFTASMNERVDGVVEYLSSHEIRGIS--ETEEYDVVIANILLN 160 (222)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~D~v~~~~~~~ 160 (222)
... ..++.+. ++..||.+.||||+.
T Consensus 163 ~kt-----------------ll~d~~~~~~e~~ydFcMcNPPFf 189 (419)
T KOG2912|consen 163 QKT-----------------LLMDALKEESEIIYDFCMCNPPFF 189 (419)
T ss_pred hhh-----------------cchhhhccCccceeeEEecCCchh
Confidence 211 0111111 344699999999974
No 306
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.91 E-value=0.14 Score=44.13 Aligned_cols=40 Identities=23% Similarity=0.254 Sum_probs=34.7
Q ss_pred EEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHH
Q 047371 62 FLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNA 101 (222)
Q Consensus 62 vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~ 101 (222)
|+|+.||.|.++.-+.+.+..-+.++|+++.+.+..+.|.
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~ 40 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANF 40 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhC
Confidence 5899999999998887778777889999999988887765
No 307
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=93.77 E-value=0.21 Score=43.42 Aligned_cols=103 Identities=22% Similarity=0.275 Sum_probs=61.0
Q ss_pred hcCCCcEEEEccCC-CHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371 56 IKGGELFLDYGTGS-GILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV 133 (222)
Q Consensus 56 ~~~~~~vLD~G~G~-G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 133 (222)
++++++||-.|+|. |..+..+++. +..+++++|.++...+.+++ .+.. . .+...+ .... ...
T Consensus 174 ~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~----~Ga~--~-~i~~~~-~~~~----~~i---- 237 (358)
T TIGR03451 174 VKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWARE----FGAT--H-TVNSSG-TDPV----EAI---- 237 (358)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCc--e-EEcCCC-cCHH----HHH----
Confidence 56789999998754 4555666665 54469999999988888754 2321 1 111111 0100 000
Q ss_pred hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCC
Q 047371 134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGIL 185 (222)
Q Consensus 134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 185 (222)
........+|+++-...- ...+..+.+.++++|.+++.+..
T Consensus 238 --------~~~~~~~g~d~vid~~g~---~~~~~~~~~~~~~~G~iv~~G~~ 278 (358)
T TIGR03451 238 --------RALTGGFGADVVIDAVGR---PETYKQAFYARDLAGTVVLVGVP 278 (358)
T ss_pred --------HHHhCCCCCCEEEECCCC---HHHHHHHHHHhccCCEEEEECCC
Confidence 001123458998853321 34567778899999999986554
No 308
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=93.75 E-value=0.057 Score=38.88 Aligned_cols=32 Identities=28% Similarity=0.277 Sum_probs=25.1
Q ss_pred CCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCC
Q 047371 58 GGELFLDYGTGSGILGIAAIKFGAAMFVGVDID 90 (222)
Q Consensus 58 ~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s 90 (222)
+...++|+|||+|.+.-.|.+.|. .=.|+|.-
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EGy-~G~GiD~R 89 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEGY-PGWGIDAR 89 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCCC-Cccccccc
Confidence 355799999999999988888764 34788863
No 309
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=93.51 E-value=0.33 Score=40.92 Aligned_cols=57 Identities=32% Similarity=0.498 Sum_probs=46.6
Q ss_pred HHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHh
Q 047371 46 KLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAAL 103 (222)
Q Consensus 46 ~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~ 103 (222)
.++...+.....+++.|||..+|+|..+......+ .+++|+|+++..++.+.+++..
T Consensus 210 ~l~~r~i~~~s~~~diVlDpf~GsGtt~~aa~~~~-r~~ig~e~~~~y~~~~~~r~~~ 266 (302)
T COG0863 210 ALIERLIRDYSFPGDIVLDPFAGSGTTGIAAKNLG-RRFIGIEINPEYVEVALKRLQE 266 (302)
T ss_pred HHHHHHHHhcCCCCCEEeecCCCCChHHHHHHHcC-CceEEEecCHHHHHHHHHHHHh
Confidence 33444444456689999999999999999887776 6899999999999999988864
No 310
>PRK11524 putative methyltransferase; Provisional
Probab=93.48 E-value=0.1 Score=44.26 Aligned_cols=37 Identities=22% Similarity=0.165 Sum_probs=31.1
Q ss_pred CCCCeeEEEecccccc-------------------HHHHHHHHHHcccCCeEEEEe
Q 047371 146 ETEEYDVVIANILLNP-------------------LPQLADHIVSYAKPGAVVGIS 182 (222)
Q Consensus 146 ~~~~~D~v~~~~~~~~-------------------~~~~l~~~~~~LkpgG~l~~~ 182 (222)
++++||+|+++||+.. +.+.+.++.++|||||.+++.
T Consensus 24 ~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 24 PSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred ccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 5778999999999742 235789999999999999985
No 311
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=93.45 E-value=0.49 Score=42.35 Aligned_cols=90 Identities=17% Similarity=0.165 Sum_probs=57.7
Q ss_pred cCCCcEEEEccCC-CHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371 57 KGGELFLDYGTGS-GILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY 135 (222)
Q Consensus 57 ~~~~~vLD~G~G~-G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 135 (222)
-+|++|+-+|+|. |......++.-..+|+++|.++..+..|+. .|.. .. +...
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~----~G~~-----~~--~~~e--------------- 253 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAM----EGYE-----VM--TMEE--------------- 253 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHh----cCCE-----Ec--cHHH---------------
Confidence 4699999999998 555544444323589999999988777754 2321 11 1000
Q ss_pred cccccccCCCCCCCeeEEEeccccccHHHHHHH-HHHcccCCeEEEEecCC
Q 047371 136 LSSHEIRGISETEEYDVVIANILLNPLPQLADH-IVSYAKPGAVVGISGIL 185 (222)
Q Consensus 136 ~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~-~~~~LkpgG~l~~~~~~ 185 (222)
....+|+++.... ....+.. ..+.+|+||.++..+..
T Consensus 254 ----------~v~~aDVVI~atG---~~~~i~~~~l~~mk~GgilvnvG~~ 291 (413)
T cd00401 254 ----------AVKEGDIFVTTTG---NKDIITGEHFEQMKDGAIVCNIGHF 291 (413)
T ss_pred ----------HHcCCCEEEECCC---CHHHHHHHHHhcCCCCcEEEEeCCC
Confidence 1134799986432 2345544 48899999999887644
No 312
>PRK10458 DNA cytosine methylase; Provisional
Probab=93.35 E-value=0.59 Score=42.52 Aligned_cols=42 Identities=14% Similarity=0.159 Sum_probs=35.9
Q ss_pred CcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHH
Q 047371 60 ELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNA 101 (222)
Q Consensus 60 ~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~ 101 (222)
.+++|+.||.|.+..-+...|...+.++|+++.+.+..+.|.
T Consensus 89 ~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~ 130 (467)
T PRK10458 89 FRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANW 130 (467)
T ss_pred ceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHc
Confidence 489999999999988887778778899999998887777664
No 313
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=93.30 E-value=0.72 Score=39.90 Aligned_cols=97 Identities=16% Similarity=0.180 Sum_probs=58.3
Q ss_pred cCCCcEEEEccCC-CHHHHHHHHhCCCEEEEEeC---ChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccc
Q 047371 57 KGGELFLDYGTGS-GILGIAAIKFGAAMFVGVDI---DPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGV 132 (222)
Q Consensus 57 ~~~~~vLD~G~G~-G~~~~~la~~~~~~v~gvD~---s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 132 (222)
+++.+|+-.|+|. |.++..+++....++++++. ++..++.+++ .+.. ......+... . .
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~----~Ga~-----~v~~~~~~~~-------~-~ 233 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEE----LGAT-----YVNSSKTPVA-------E-V 233 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHH----cCCE-----EecCCccchh-------h-h
Confidence 5788999998865 55666666653358999987 5666666653 2321 1111100000 0 0
Q ss_pred hhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCC
Q 047371 133 VEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGIL 185 (222)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 185 (222)
...+.+|+++....- ...+..+.+.++++|.+++.+..
T Consensus 234 ------------~~~~~~d~vid~~g~---~~~~~~~~~~l~~~G~~v~~G~~ 271 (355)
T cd08230 234 ------------KLVGEFDLIIEATGV---PPLAFEALPALAPNGVVILFGVP 271 (355)
T ss_pred ------------hhcCCCCEEEECcCC---HHHHHHHHHHccCCcEEEEEecC
Confidence 012468998864432 24677888999999999886543
No 314
>PRK13699 putative methylase; Provisional
Probab=93.27 E-value=0.18 Score=41.35 Aligned_cols=52 Identities=10% Similarity=0.080 Sum_probs=37.0
Q ss_pred CCCCeeEEEecccccc------------------HHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHh
Q 047371 146 ETEEYDVVIANILLNP------------------LPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSE 198 (222)
Q Consensus 146 ~~~~~D~v~~~~~~~~------------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~ 198 (222)
+++++|+|+.+||+.. +...+.++.|+|||||.+++.+. ......+...++.
T Consensus 17 pd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~-~~~~~~~~~al~~ 86 (227)
T PRK13699 17 PDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYG-WNRVDRFMAAWKN 86 (227)
T ss_pred CccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEec-cccHHHHHHHHHH
Confidence 7889999999999841 34578999999999999887422 2223445555544
No 315
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=93.05 E-value=0.29 Score=42.78 Aligned_cols=102 Identities=17% Similarity=0.216 Sum_probs=60.3
Q ss_pred hcCCCcEEEEccCC-CHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371 56 IKGGELFLDYGTGS-GILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV 133 (222)
Q Consensus 56 ~~~~~~vLD~G~G~-G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 133 (222)
++++++||-.|+|. |..+..+++. +..+|+++|.++..++.+++. +.. ..+.. ....+. ...
T Consensus 189 i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~----Ga~---~~i~~-~~~~~~----~~i---- 252 (371)
T cd08281 189 VRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALAREL----GAT---ATVNA-GDPNAV----EQV---- 252 (371)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHc----CCc---eEeCC-CchhHH----HHH----
Confidence 56788998888764 4555556654 544799999999988887642 321 11111 111110 000
Q ss_pred hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCC
Q 047371 134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGIL 185 (222)
Q Consensus 134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 185 (222)
... ..+.+|+++.... -...++.+.+.++++|.+++.+..
T Consensus 253 --------~~~-~~~g~d~vid~~G---~~~~~~~~~~~l~~~G~iv~~G~~ 292 (371)
T cd08281 253 --------REL-TGGGVDYAFEMAG---SVPALETAYEITRRGGTTVTAGLP 292 (371)
T ss_pred --------HHH-hCCCCCEEEECCC---ChHHHHHHHHHHhcCCEEEEEccC
Confidence 001 1226899986432 135677788899999999886543
No 316
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=92.91 E-value=0.32 Score=42.13 Aligned_cols=103 Identities=18% Similarity=0.275 Sum_probs=62.9
Q ss_pred hcCCCcEEEEccCC-CHHHHHHHH-hCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371 56 IKGGELFLDYGTGS-GILGIAAIK-FGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV 133 (222)
Q Consensus 56 ~~~~~~vLD~G~G~-G~~~~~la~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 133 (222)
+++|+++.-+|||. |.-++.-+. .+...++++|++++.++.|++.=....++ ..+.... -+....+
T Consensus 183 v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGAT~~vn-------~~~~~~v----v~~i~~~- 250 (366)
T COG1062 183 VEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATHFVN-------PKEVDDV----VEAIVEL- 250 (366)
T ss_pred CCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCCceeec-------chhhhhH----HHHHHHh-
Confidence 67899999999997 655555444 47889999999999999998742222211 1101000 0011111
Q ss_pred hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCC
Q 047371 134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGIL 185 (222)
Q Consensus 134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 185 (222)
-.+..|.++--- ...+.+++....+.++|..++.++.
T Consensus 251 ------------T~gG~d~~~e~~---G~~~~~~~al~~~~~~G~~v~iGv~ 287 (366)
T COG1062 251 ------------TDGGADYAFECV---GNVEVMRQALEATHRGGTSVIIGVA 287 (366)
T ss_pred ------------cCCCCCEEEEcc---CCHHHHHHHHHHHhcCCeEEEEecC
Confidence 233567776421 1234677777778889988885443
No 317
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=92.89 E-value=0.38 Score=42.28 Aligned_cols=53 Identities=17% Similarity=0.171 Sum_probs=38.5
Q ss_pred HHHHHHHhh--hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHH
Q 047371 47 LCLLLLQSL--IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQ 99 (222)
Q Consensus 47 ~~~~~l~~~--~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~ 99 (222)
.+.+++.+. ..+-+.++|+|+|.|.++.++.-...-.|.|+|-|....+.|++
T Consensus 140 ~lselvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 140 RLSELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred HHHHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence 344444443 23457899999999999998875444689999999877666643
No 318
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=92.83 E-value=0.47 Score=38.59 Aligned_cols=100 Identities=20% Similarity=0.321 Sum_probs=60.0
Q ss_pred cCCCcEEEEccCC-CHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371 57 KGGELFLDYGTGS-GILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY 135 (222)
Q Consensus 57 ~~~~~vLD~G~G~-G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 135 (222)
.++.+||..|+|+ |..+..+++....++++++.++...+.++.. +.. .+ +...+. ... ..+
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~----g~~--~~-~~~~~~-~~~-------~~~--- 194 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKEL----GAD--HV-IDYKEE-DLE-------EEL--- 194 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHh----CCc--ee-ccCCcC-CHH-------HHH---
Confidence 6788999999886 5555556655447899999998777666432 211 10 111100 000 000
Q ss_pred cccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecC
Q 047371 136 LSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGI 184 (222)
Q Consensus 136 ~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 184 (222)
. ....+.+|+++.+..- ...+..+.+.++++|.++..+.
T Consensus 195 ------~-~~~~~~~d~vi~~~~~---~~~~~~~~~~l~~~G~~v~~~~ 233 (271)
T cd05188 195 ------R-LTGGGGADVVIDAVGG---PETLAQALRLLRPGGRIVVVGG 233 (271)
T ss_pred ------H-HhcCCCCCEEEECCCC---HHHHHHHHHhcccCCEEEEEcc
Confidence 0 1134579999975432 1456777888999999887543
No 319
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=92.81 E-value=0.41 Score=40.65 Aligned_cols=101 Identities=20% Similarity=0.276 Sum_probs=61.2
Q ss_pred hcCCCcEEEEccCC-CHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371 56 IKGGELFLDYGTGS-GILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE 134 (222)
Q Consensus 56 ~~~~~~vLD~G~G~-G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 134 (222)
++++.+||..|+|. |..+..+++....++++++.++...+.+++ .+.. .+ ......... ...
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~----~g~~--~~--~~~~~~~~~----~~~----- 225 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKE----LGAD--EV--LNSLDDSPK----DKK----- 225 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH----hCCC--EE--EcCCCcCHH----HHH-----
Confidence 56788888887663 566666776544679999999988777754 2322 11 111100100 000
Q ss_pred ccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecC
Q 047371 135 YLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGI 184 (222)
Q Consensus 135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 184 (222)
.....+.+|+++.... ....++.+.+.|+++|.++..+.
T Consensus 226 --------~~~~~~~~D~vid~~g---~~~~~~~~~~~l~~~G~~v~~g~ 264 (338)
T cd08254 226 --------AAGLGGGFDVIFDFVG---TQPTFEDAQKAVKPGGRIVVVGL 264 (338)
T ss_pred --------HHhcCCCceEEEECCC---CHHHHHHHHHHhhcCCEEEEECC
Confidence 0113457999886432 24577888999999999987543
No 320
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=92.77 E-value=0.45 Score=40.75 Aligned_cols=101 Identities=19% Similarity=0.261 Sum_probs=58.3
Q ss_pred hcCCCcEEEEccCC-CHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371 56 IKGGELFLDYGTGS-GILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV 133 (222)
Q Consensus 56 ~~~~~~vLD~G~G~-G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 133 (222)
++++++||-.|+|. |..+..+++. +..++++++.++...+.+++. +.. .+ +...+. .. ...
T Consensus 161 ~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~----ga~--~~-i~~~~~-~~-----~~~---- 223 (339)
T cd08239 161 VSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKAL----GAD--FV-INSGQD-DV-----QEI---- 223 (339)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CCC--EE-EcCCcc-hH-----HHH----
Confidence 46788999987753 3445555554 544499999999887777542 321 10 111100 00 000
Q ss_pred hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecC
Q 047371 134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGI 184 (222)
Q Consensus 134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 184 (222)
........+|+++....- ...+..+.+.|+++|.+++.+.
T Consensus 224 --------~~~~~~~~~d~vid~~g~---~~~~~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 224 --------RELTSGAGADVAIECSGN---TAARRLALEAVRPWGRLVLVGE 263 (339)
T ss_pred --------HHHhCCCCCCEEEECCCC---HHHHHHHHHHhhcCCEEEEEcC
Confidence 001133469999864322 3455677788999999987554
No 321
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=92.77 E-value=0.1 Score=37.75 Aligned_cols=34 Identities=24% Similarity=0.443 Sum_probs=26.6
Q ss_pred CeeEEEecccccc---------HHHHHHHHHHcccCCeEEEEe
Q 047371 149 EYDVVIANILLNP---------LPQLADHIVSYAKPGAVVGIS 182 (222)
Q Consensus 149 ~~D~v~~~~~~~~---------~~~~l~~~~~~LkpgG~l~~~ 182 (222)
+||+|+|-...-+ +..++..+++.|+|||++++.
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilE 43 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILE 43 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEe
Confidence 4899999665432 556899999999999999993
No 322
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=92.68 E-value=1.8 Score=30.90 Aligned_cols=89 Identities=15% Similarity=0.134 Sum_probs=54.7
Q ss_pred cCCCHHHHHHHHh---CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccccccccC
Q 047371 67 TGSGILGIAAIKF---GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRG 143 (222)
Q Consensus 67 ~G~G~~~~~la~~---~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (222)
||.|.++..+++. ....++.+|.++..++.++.. .+.+..+|..... .....
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~---------~~~~i~gd~~~~~-----~l~~a----------- 58 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE---------GVEVIYGDATDPE-----VLERA----------- 58 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT---------TSEEEES-TTSHH-----HHHHT-----------
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc---------ccccccccchhhh-----HHhhc-----------
Confidence 6777777776642 435899999999998887653 2347777775542 11111
Q ss_pred CCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEe
Q 047371 144 ISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGIS 182 (222)
Q Consensus 144 ~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 182 (222)
....+|.+++...-+...-.+....+.+-|...++..
T Consensus 59 --~i~~a~~vv~~~~~d~~n~~~~~~~r~~~~~~~ii~~ 95 (116)
T PF02254_consen 59 --GIEKADAVVILTDDDEENLLIALLARELNPDIRIIAR 95 (116)
T ss_dssp --TGGCESEEEEESSSHHHHHHHHHHHHHHTTTSEEEEE
T ss_pred --CccccCEEEEccCCHHHHHHHHHHHHHHCCCCeEEEE
Confidence 4456888887554443333455566667777777764
No 323
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=92.62 E-value=0.43 Score=39.92 Aligned_cols=99 Identities=21% Similarity=0.157 Sum_probs=58.9
Q ss_pred cCCCcEEEEccCC-CHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371 57 KGGELFLDYGTGS-GILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE 134 (222)
Q Consensus 57 ~~~~~vLD~G~G~-G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 134 (222)
.++++||-.|+|. |..+..+++. +..+++++|.++..++.+++. +.. . .+...+.. ...
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~----Ga~--~-~i~~~~~~-------~~~----- 179 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSF----GAT--A-LAEPEVLA-------ERQ----- 179 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----CCc--E-ecCchhhH-------HHH-----
Confidence 4788999998764 4455555554 555699999999888777652 321 1 01100000 000
Q ss_pred ccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecC
Q 047371 135 YLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGI 184 (222)
Q Consensus 135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 184 (222)
........+|+++-... -...++.+.+.++++|.+++.+.
T Consensus 180 -------~~~~~~~g~d~vid~~G---~~~~~~~~~~~l~~~G~iv~~G~ 219 (280)
T TIGR03366 180 -------GGLQNGRGVDVALEFSG---ATAAVRACLESLDVGGTAVLAGS 219 (280)
T ss_pred -------HHHhCCCCCCEEEECCC---ChHHHHHHHHHhcCCCEEEEecc
Confidence 00112345899885332 23567778889999999998664
No 324
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=92.53 E-value=1.6 Score=37.25 Aligned_cols=85 Identities=22% Similarity=0.233 Sum_probs=57.5
Q ss_pred CCCcEEEEccCCC---HHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371 58 GGELFLDYGTGSG---ILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE 134 (222)
Q Consensus 58 ~~~~vLD~G~G~G---~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 134 (222)
.|..||--|+|+| .++..+++.+. .++..|+++...+...+.++..| ++..+.+|..+.. ++...+..+.+
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~~etv~~~~~~g----~~~~y~cdis~~e-ei~~~a~~Vk~ 110 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGNEETVKEIRKIG----EAKAYTCDISDRE-EIYRLAKKVKK 110 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccchHHHHHHHHhcC----ceeEEEecCCCHH-HHHHHHHHHHH
Confidence 4778999999998 46777888874 88999999988888777776554 4556666664432 11111122211
Q ss_pred ccccccccCCCCCCCeeEEEecccc
Q 047371 135 YLSSHEIRGISETEEYDVVIANILL 159 (222)
Q Consensus 135 ~~~~~~~~~~~~~~~~D~v~~~~~~ 159 (222)
+-+.+|+++.|..+
T Consensus 111 -----------e~G~V~ILVNNAGI 124 (300)
T KOG1201|consen 111 -----------EVGDVDILVNNAGI 124 (300)
T ss_pred -----------hcCCceEEEecccc
Confidence 45689999988754
No 325
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=92.39 E-value=0.56 Score=40.40 Aligned_cols=102 Identities=20% Similarity=0.297 Sum_probs=58.1
Q ss_pred hcCCCcEEEEccCC-CHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371 56 IKGGELFLDYGTGS-GILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV 133 (222)
Q Consensus 56 ~~~~~~vLD~G~G~-G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 133 (222)
++++.+||-.|+|. |..+..+++. +...+++++.++...+.+++ .+.. . +...+.... . .
T Consensus 158 ~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~Ga~--~--~i~~~~~~~-----~---~-- 219 (347)
T PRK10309 158 GCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKS----LGAM--Q--TFNSREMSA-----P---Q-- 219 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCc--e--EecCcccCH-----H---H--
Confidence 45788999998755 4455555654 54458999999988777643 2321 1 111110000 0 0
Q ss_pred hccccccccCCCCCCCee-EEEeccccccHHHHHHHHHHcccCCeEEEEecCC
Q 047371 134 EYLSSHEIRGISETEEYD-VVIANILLNPLPQLADHIVSYAKPGAVVGISGIL 185 (222)
Q Consensus 134 ~~~~~~~~~~~~~~~~~D-~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 185 (222)
+........+| +++-... -...+....++++++|.+++.+..
T Consensus 220 -------~~~~~~~~~~d~~v~d~~G---~~~~~~~~~~~l~~~G~iv~~G~~ 262 (347)
T PRK10309 220 -------IQSVLRELRFDQLILETAG---VPQTVELAIEIAGPRAQLALVGTL 262 (347)
T ss_pred -------HHHHhcCCCCCeEEEECCC---CHHHHHHHHHHhhcCCEEEEEccC
Confidence 00011234577 5553221 135678888999999999987654
No 326
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=91.85 E-value=0.92 Score=39.67 Aligned_cols=57 Identities=18% Similarity=0.276 Sum_probs=39.8
Q ss_pred HHHHHHhhhcC-CCcEEEEccCCCHHHHHHHH----h-----CCCEEEEEeCChHHHHHHHHHHHhc
Q 047371 48 CLLLLQSLIKG-GELFLDYGTGSGILGIAAIK----F-----GAAMFVGVDIDPQVIKSAHQNAALN 104 (222)
Q Consensus 48 ~~~~l~~~~~~-~~~vLD~G~G~G~~~~~la~----~-----~~~~v~gvD~s~~~l~~a~~~~~~~ 104 (222)
+.+.++++-.| .-.++|+|+|.|.++..+.+ . ...++.-+|.|++....=+++++..
T Consensus 66 ~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 66 FLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred HHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence 34444444333 45799999999988776553 1 2578999999998887777766543
No 327
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=91.85 E-value=1.1 Score=37.09 Aligned_cols=56 Identities=14% Similarity=0.243 Sum_probs=37.3
Q ss_pred HHHHHHhhhcC--CCcEEEEccCCCHHHHHHHHh---------CCCEEEEEeCChHHHHHHHHHHHh
Q 047371 48 CLLLLQSLIKG--GELFLDYGTGSGILGIAAIKF---------GAAMFVGVDIDPQVIKSAHQNAAL 103 (222)
Q Consensus 48 ~~~~l~~~~~~--~~~vLD~G~G~G~~~~~la~~---------~~~~v~gvD~s~~~l~~a~~~~~~ 103 (222)
+...++..-.| .-+|+|+|+|+|.++.-+++. ...+++-+|.|+.+.+.-++++..
T Consensus 6 ~~~~~~~~~~p~~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 6 IAQMWEQLGRPSEPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp HHHHHHHCT--SS-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred HHHHHHHcCCCCcCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 34444444233 358999999999988876642 235899999999988877777654
No 328
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=91.60 E-value=0.85 Score=41.91 Aligned_cols=42 Identities=24% Similarity=0.302 Sum_probs=32.0
Q ss_pred CCCcEEEEccCC-CHHHHHHHHhCCCEEEEEeCChHHHHHHHH
Q 047371 58 GGELFLDYGTGS-GILGIAAIKFGAAMFVGVDIDPQVIKSAHQ 99 (222)
Q Consensus 58 ~~~~vLD~G~G~-G~~~~~la~~~~~~v~gvD~s~~~l~~a~~ 99 (222)
++.+++-+|+|. |..+..+++.-...++++|.++..++.++.
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~ 205 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQS 205 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 467999999997 566665555433579999999998877765
No 329
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=91.44 E-value=0.61 Score=42.18 Aligned_cols=126 Identities=17% Similarity=0.171 Sum_probs=78.7
Q ss_pred CCCcEEEEccCCCHHHHHHH-HhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcc
Q 047371 58 GGELFLDYGTGSGILGIAAI-KFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYL 136 (222)
Q Consensus 58 ~~~~vLD~G~G~G~~~~~la-~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (222)
.+..+|-+|-|.|.+...+- ..+..++++++++|.+++.|.++.....- .+......|+..+.. ..
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~--~r~~V~i~dGl~~~~-------~~---- 361 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQS--DRNKVHIADGLDFLQ-------RT---- 361 (482)
T ss_pred ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhh--hhhhhhHhhchHHHH-------HH----
Confidence 34578889999998877654 45778999999999999999987743221 123333344333211 00
Q ss_pred ccccccCCCCCCCeeEEEecc---cccc---------HHHHHHHHHHcccCCeEEEEecCC--CCcHHHHHHHHHhhh
Q 047371 137 SSHEIRGISETEEYDVVIANI---LLNP---------LPQLADHIVSYAKPGAVVGISGIL--SEQLPRIINRYSEFL 200 (222)
Q Consensus 137 ~~~~~~~~~~~~~~D~v~~~~---~~~~---------~~~~l~~~~~~LkpgG~l~~~~~~--~~~~~~~~~~~~~~~ 200 (222)
+........||+++.+. ..+. -..++..+...|.|.|.+++.... .....++...+...|
T Consensus 362 ----~k~~~~~~~~dvl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~~~~~~~~~~~l~~vf 435 (482)
T KOG2352|consen 362 ----AKSQQEDICPDVLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRNSSFKDEVLMNLAKVF 435 (482)
T ss_pred ----hhccccccCCcEEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCCcchhHHHHHhhhhhh
Confidence 11112456799998631 1111 234789999999999999986443 333455555555543
No 330
>PLN02740 Alcohol dehydrogenase-like
Probab=91.41 E-value=1.9 Score=37.86 Aligned_cols=103 Identities=17% Similarity=0.274 Sum_probs=60.1
Q ss_pred hcCCCcEEEEccCC-CHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCc-ccccccccccccc
Q 047371 56 IKGGELFLDYGTGS-GILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDR-TFTASMNERVDGV 132 (222)
Q Consensus 56 ~~~~~~vLD~G~G~-G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~ 132 (222)
+++|++||-.|+|. |..+..+++. +..+|+++|.++..++.+++ .+.. . .+...+.. .+. .....+
T Consensus 196 ~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~--~-~i~~~~~~~~~~----~~v~~~ 264 (381)
T PLN02740 196 VQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE----MGIT--D-FINPKDSDKPVH----ERIREM 264 (381)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH----cCCc--E-EEecccccchHH----HHHHHH
Confidence 56789999998764 4555556654 54479999999988888865 2322 1 11111100 000 000011
Q ss_pred hhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCC-eEEEEecCC
Q 047371 133 VEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPG-AVVGISGIL 185 (222)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~~ 185 (222)
..+.+|+++-...- ...+....+.++++ |.+++.+..
T Consensus 265 -------------~~~g~dvvid~~G~---~~~~~~a~~~~~~g~G~~v~~G~~ 302 (381)
T PLN02740 265 -------------TGGGVDYSFECAGN---VEVLREAFLSTHDGWGLTVLLGIH 302 (381)
T ss_pred -------------hCCCCCEEEECCCC---hHHHHHHHHhhhcCCCEEEEEccC
Confidence 12268999864432 35667777888886 888876543
No 331
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=91.32 E-value=3.9 Score=31.78 Aligned_cols=37 Identities=16% Similarity=0.257 Sum_probs=30.5
Q ss_pred CCCCeeEEEecccccc----------------HHHHHHHHHHcccCCeEEEEe
Q 047371 146 ETEEYDVVIANILLNP----------------LPQLADHIVSYAKPGAVVGIS 182 (222)
Q Consensus 146 ~~~~~D~v~~~~~~~~----------------~~~~l~~~~~~LkpgG~l~~~ 182 (222)
..++||.|+.|.|-.. +..+++.+..+|+++|.+.++
T Consensus 72 ~~~~FDrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVT 124 (166)
T PF10354_consen 72 KNQRFDRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVT 124 (166)
T ss_pred cCCcCCEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 4678999999987533 345789999999999999986
No 332
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=91.28 E-value=7.9 Score=32.42 Aligned_cols=116 Identities=10% Similarity=0.140 Sum_probs=66.0
Q ss_pred CCCcEEEEccCCCHHHHHHHHh----C-CCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccc
Q 047371 58 GGELFLDYGTGSGILGIAAIKF----G-AAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGV 132 (222)
Q Consensus 58 ~~~~vLD~G~G~G~~~~~la~~----~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 132 (222)
.+.+++|+|.|+..-+..+... + ...++.+|++...+......+...-.. -.+.-..++.+..- ..+
T Consensus 78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~-l~v~~l~~~~~~~L-------a~~ 149 (321)
T COG4301 78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPG-LEVNALCGDYELAL-------AEL 149 (321)
T ss_pred CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCC-CeEeehhhhHHHHH-------hcc
Confidence 5789999999999877766542 2 367999999999887655544332211 12333333332211 111
Q ss_pred hhccccccccCCCCCCCeeEEE-ecccccc-----HHHHHHHHHHcccCCeEEEEecCCCCcHHHHHH
Q 047371 133 VEYLSSHEIRGISETEEYDVVI-ANILLNP-----LPQLADHIVSYAKPGAVVGISGILSEQLPRIIN 194 (222)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~D~v~-~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~ 194 (222)
+..+--+++ ....+.. -..++.++...+.||-++.+-.-..+..+.++.
T Consensus 150 -------------~~~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvDl~k~Ae~Le~ 204 (321)
T COG4301 150 -------------PRGGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVDLRKPAERLEA 204 (321)
T ss_pred -------------cCCCeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEeccccCHHHHHHH
Confidence 222222222 2222222 335899999999999999984333333333333
No 333
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=91.18 E-value=0.9 Score=39.38 Aligned_cols=102 Identities=15% Similarity=0.176 Sum_probs=61.4
Q ss_pred hcCCCcEEEEcc-C-CCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371 56 IKGGELFLDYGT-G-SGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV 133 (222)
Q Consensus 56 ~~~~~~vLD~G~-G-~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 133 (222)
+++|++||-.|+ | .|..+..+++....++++++.++...+.+++. .+.. . .+...+...+. ..
T Consensus 156 ~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~---lGa~--~-vi~~~~~~~~~----~~----- 220 (348)
T PLN03154 156 PKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNK---LGFD--E-AFNYKEEPDLD----AA----- 220 (348)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHh---cCCC--E-EEECCCcccHH----HH-----
Confidence 567899999987 3 36677777776446799999988877766532 2322 1 11111000110 00
Q ss_pred hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecC
Q 047371 134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGI 184 (222)
Q Consensus 134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 184 (222)
+... ..+.+|+++.... ...+..+.+.++++|.+++.+.
T Consensus 221 -------i~~~-~~~gvD~v~d~vG----~~~~~~~~~~l~~~G~iv~~G~ 259 (348)
T PLN03154 221 -------LKRY-FPEGIDIYFDNVG----GDMLDAALLNMKIHGRIAVCGM 259 (348)
T ss_pred -------HHHH-CCCCcEEEEECCC----HHHHHHHHHHhccCCEEEEECc
Confidence 0001 1246899986432 2467788899999999988654
No 334
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=90.99 E-value=0.51 Score=40.55 Aligned_cols=46 Identities=28% Similarity=0.432 Sum_probs=36.4
Q ss_pred hhcCCCcEEEEccCCCHHH-HHHHH-hCCCEEEEEeCChHHHHHHHHH
Q 047371 55 LIKGGELFLDYGTGSGILG-IAAIK-FGAAMFVGVDIDPQVIKSAHQN 100 (222)
Q Consensus 55 ~~~~~~~vLD~G~G~G~~~-~~la~-~~~~~v~gvD~s~~~l~~a~~~ 100 (222)
.+++|+++.-+|+|.=.++ .+-++ .++++++|+|+++...+.|++.
T Consensus 189 kv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~f 236 (375)
T KOG0022|consen 189 KVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEF 236 (375)
T ss_pred ccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhc
Confidence 3678999999999974433 34444 4789999999999999999874
No 335
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=90.71 E-value=5.6 Score=30.89 Aligned_cols=109 Identities=13% Similarity=0.031 Sum_probs=64.2
Q ss_pred hhHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccccc
Q 047371 44 TTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTA 123 (222)
Q Consensus 44 ~~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~ 123 (222)
+...+...+.+...++.+|+=+||=+-...+.-...+..+++..|++... ...+ .+ .|..-|......
T Consensus 11 T~~~l~~~l~~~~~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF--------~~~~---~~-~F~fyD~~~p~~ 78 (162)
T PF10237_consen 11 TAEFLARELLDGALDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRF--------EQFG---GD-EFVFYDYNEPEE 78 (162)
T ss_pred HHHHHHHHHHHhcCCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchH--------HhcC---Cc-ceEECCCCChhh
Confidence 34444444544444677899998877555543322345688999998733 2211 12 344444433210
Q ss_pred ccccccccchhccccccccCCCCCCCeeEEEecccccc---HHHHHHHHHHcccCCeEEEEe
Q 047371 124 SMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP---LPQLADHIVSYAKPGAVVGIS 182 (222)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~ 182 (222)
++ .. -.++||+|+++||+-. ..+....+..++|+++.+++.
T Consensus 79 -~~---------------~~--l~~~~d~vv~DPPFl~~ec~~k~a~ti~~L~k~~~kii~~ 122 (162)
T PF10237_consen 79 -LP---------------EE--LKGKFDVVVIDPPFLSEECLTKTAETIRLLLKPGGKIILC 122 (162)
T ss_pred -hh---------------hh--cCCCceEEEECCCCCCHHHHHHHHHHHHHHhCccceEEEe
Confidence 00 00 2468999999999843 334567777777888888875
No 336
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=90.70 E-value=0.96 Score=42.92 Aligned_cols=35 Identities=20% Similarity=0.231 Sum_probs=27.6
Q ss_pred CCeeEEEecccc------ccHHHHHHHHHHcccCCeEEEEe
Q 047371 148 EEYDVVIANILL------NPLPQLADHIVSYAKPGAVVGIS 182 (222)
Q Consensus 148 ~~~D~v~~~~~~------~~~~~~l~~~~~~LkpgG~l~~~ 182 (222)
..+|+++.++.- -+..+++..+.++++|||.+...
T Consensus 165 ~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~ 205 (662)
T PRK01747 165 ARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATF 205 (662)
T ss_pred ccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEe
Confidence 469999987421 13567999999999999999874
No 337
>PLN02827 Alcohol dehydrogenase-like
Probab=90.54 E-value=2.3 Score=37.34 Aligned_cols=103 Identities=17% Similarity=0.269 Sum_probs=59.2
Q ss_pred hcCCCcEEEEccCC-CHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCC-cccccccccccccc
Q 047371 56 IKGGELFLDYGTGS-GILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPD-RTFTASMNERVDGV 132 (222)
Q Consensus 56 ~~~~~~vLD~G~G~-G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~ 132 (222)
+++|++||-.|+|. |..+..+++. +...++++|.++...+.|++ .+.. .+ +...+. ..+. .....+
T Consensus 191 ~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~----lGa~--~~-i~~~~~~~~~~----~~v~~~ 259 (378)
T PLN02827 191 VSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKT----FGVT--DF-INPNDLSEPIQ----QVIKRM 259 (378)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCc--EE-EcccccchHHH----HHHHHH
Confidence 56789999998754 4555555654 55569999999988777754 2332 11 111100 0000 000011
Q ss_pred hhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCC-eEEEEecCC
Q 047371 133 VEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPG-AVVGISGIL 185 (222)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~~ 185 (222)
..+.+|+++-... ....+....+.+++| |.+++.+..
T Consensus 260 -------------~~~g~d~vid~~G---~~~~~~~~l~~l~~g~G~iv~~G~~ 297 (378)
T PLN02827 260 -------------TGGGADYSFECVG---DTGIATTALQSCSDGWGLTVTLGVP 297 (378)
T ss_pred -------------hCCCCCEEEECCC---ChHHHHHHHHhhccCCCEEEEECCc
Confidence 1226899886432 224567778889998 999876543
No 338
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=90.51 E-value=1.4 Score=39.03 Aligned_cols=56 Identities=14% Similarity=0.051 Sum_probs=38.3
Q ss_pred CcEEEEccCC-CHHHH-HHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccc
Q 047371 60 ELFLDYGTGS-GILGI-AAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTF 121 (222)
Q Consensus 60 ~~vLD~G~G~-G~~~~-~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~ 121 (222)
++||-+|||. |+... .+++.+..+|+..|-+.+..+.+...... +++....|+...
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~------~v~~~~vD~~d~ 59 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGG------KVEALQVDAADV 59 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccc------cceeEEecccCh
Confidence 4689999975 54333 45666657999999999888888665421 455666666443
No 339
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=90.46 E-value=0.49 Score=39.02 Aligned_cols=50 Identities=16% Similarity=0.161 Sum_probs=33.2
Q ss_pred HHHhhhc--CCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHH
Q 047371 51 LLQSLIK--GGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNA 101 (222)
Q Consensus 51 ~l~~~~~--~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~ 101 (222)
.+...++ +..+++|+.||+|.++..+... ...++..|+++..+...+..+
T Consensus 11 ~I~~~ip~~~~~~~vepF~G~g~V~~~~~~~-~~~vi~ND~~~~l~~~~~~~l 62 (260)
T PF02086_consen 11 WIIELIPKNKHKTYVEPFAGGGSVFLNLKQP-GKRVIINDINPDLINFWKAVL 62 (260)
T ss_dssp HHHHHS-S-S-SEEEETT-TTSHHHHCC----SSEEEEEES-HHHHHHHHHHH
T ss_pred HHHHHcCCCCCCEEEEEecchhHHHHHhccc-ccceeeeechHHHHHHHHHHH
Confidence 3444444 6889999999999999987664 478999999998776665333
No 340
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=90.44 E-value=12 Score=33.14 Aligned_cols=110 Identities=15% Similarity=0.101 Sum_probs=67.9
Q ss_pred hhHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHH-HHHHHHhcCCCCCceeEEecCCcccc
Q 047371 44 TTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKS-AHQNAALNNIGPKKIKLHLVPDRTFT 122 (222)
Q Consensus 44 ~~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~-a~~~~~~~~~~~~~v~~~~~~~~~~~ 122 (222)
....+++.+......+ .|+-++=.-|.++..++..+.. .+ .+....+. .+.|+..+++..+.++.......
T Consensus 31 ade~ll~~~~~~~~~~-~~~i~nd~fGal~~~l~~~~~~---~~-~ds~~~~~~~~~n~~~n~~~~~~~~~~~~~~~--- 102 (378)
T PRK15001 31 ADEYLLQQLDDTEIRG-PVLILNDAFGALSCALAEHKPY---SI-GDSYISELATRENLRLNGIDESSVKFLDSTAD--- 102 (378)
T ss_pred HHHHHHHHHhhcccCC-CEEEEcCchhHHHHHHHhCCCC---ee-ehHHHHHHHHHHHHHHcCCCcccceeeccccc---
Confidence 4444444444332222 7999999999999998865432 22 22333333 36677888876444444432211
Q ss_pred cccccccccchhccccccccCCCCCCCeeEEEecccccc--HHHHHHHHHHcccCCeEEEEecC
Q 047371 123 ASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP--LPQLADHIVSYAKPGAVVGISGI 184 (222)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~ 184 (222)
..+.+|+|++-.|-.. +...+..+.+.|.||+.++..+-
T Consensus 103 -----------------------~~~~~d~vl~~~PK~~~~l~~~l~~l~~~l~~~~~ii~g~~ 143 (378)
T PRK15001 103 -----------------------YPQQPGVVLIKVPKTLALLEQQLRALRKVVTSDTRIIAGAK 143 (378)
T ss_pred -----------------------ccCCCCEEEEEeCCCHHHHHHHHHHHHhhCCCCCEEEEEEe
Confidence 2445899998766542 45578899999999999876433
No 341
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=90.37 E-value=1.1 Score=38.61 Aligned_cols=44 Identities=30% Similarity=0.472 Sum_probs=33.3
Q ss_pred hcCCCcEEEEccCC-CHHHHHHHHhCCCEEEEEeCChHHHHHHHH
Q 047371 56 IKGGELFLDYGTGS-GILGIAAIKFGAAMFVGVDIDPQVIKSAHQ 99 (222)
Q Consensus 56 ~~~~~~vLD~G~G~-G~~~~~la~~~~~~v~gvD~s~~~l~~a~~ 99 (222)
++++.+|+-.|+|. |..+..+++....+++++|.++..++.+++
T Consensus 164 ~~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~ 208 (349)
T TIGR03201 164 LKKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKG 208 (349)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH
Confidence 56789999999855 556666666533579999999988887754
No 342
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=90.36 E-value=0.23 Score=41.88 Aligned_cols=40 Identities=28% Similarity=0.394 Sum_probs=33.6
Q ss_pred hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHH
Q 047371 56 IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIK 95 (222)
Q Consensus 56 ~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~ 95 (222)
.-.+++|||+|||.|.-.+.+...+...+...|+|...++
T Consensus 114 ~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~ 153 (282)
T KOG2920|consen 114 SFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLR 153 (282)
T ss_pred EecCceeEecCCcccccchhhhhhccceeeeEecchhhee
Confidence 3468999999999999888877777678999999987774
No 343
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=90.29 E-value=0.73 Score=35.69 Aligned_cols=111 Identities=17% Similarity=0.205 Sum_probs=54.4
Q ss_pred ccccCCcchhHHHHHHHHhhhcCCCcEEEEccCCCHHHH-HHHHhCCC-EEEEEeCChHHHHHHHHHHHhcCCCCCceeE
Q 047371 36 AFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSGILGI-AAIKFGAA-MFVGVDIDPQVIKSAHQNAALNNIGPKKIKL 113 (222)
Q Consensus 36 ~f~~~~~~~~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~-~la~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~ 113 (222)
.|..........+.++|......|++|.=.|+|....++ ........ -...+|.++. +......| ..+.+
T Consensus 45 ~f~~~~~~~~~~l~~~L~~~~~~gk~I~~yGA~~kg~tlln~~g~~~~~I~~vvD~np~-----K~G~~~PG---t~ipI 116 (160)
T PF08484_consen 45 NFAKRVEQSKAELREFLEKLKAEGKRIAGYGAGAKGNTLLNYFGLDNDLIDYVVDDNPL-----KQGKYLPG---THIPI 116 (160)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT--EEEE---SHHHHHHHHHT--TTTS--EEES-GG-----GTTEE-TT---T--EE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCEEEEECcchHHHHHHHHhCCCcceeEEEEeCChh-----hcCcccCC---CCCeE
Confidence 343333334445556665566689999999999976654 34333222 3467798772 22211122 12333
Q ss_pred EecCCcccccccccccccchhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEE
Q 047371 114 HLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGI 181 (222)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 181 (222)
... +.+ .....|+++. .+.++..++++.+...++.||.+++
T Consensus 117 ~~p--~~l------------------------~~~~pd~viv-law~y~~EI~~~~~~~~~~gg~fi~ 157 (160)
T PF08484_consen 117 VSP--EEL------------------------KERKPDYVIV-LAWNYKDEIIEKLREYLERGGKFIV 157 (160)
T ss_dssp EEG--GG--------------------------SS--SEEEE-S-GGGHHHHHHHTHHHHHTT-EEEE
T ss_pred CCH--HHH------------------------hhCCCCEEEE-cChhhHHHHHHHHHHHHhcCCEEEE
Confidence 322 111 3445688776 3355578899999999999999987
No 344
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=90.27 E-value=4.3 Score=35.26 Aligned_cols=20 Identities=25% Similarity=0.217 Sum_probs=14.0
Q ss_pred CCCcEEEEccCCCHHHHHHH
Q 047371 58 GGELFLDYGTGSGILGIAAI 77 (222)
Q Consensus 58 ~~~~vLD~G~G~G~~~~~la 77 (222)
..-+|+|+||.+|..++.+.
T Consensus 16 ~~~~iaD~GcS~G~Nsl~~~ 35 (334)
T PF03492_consen 16 KPFRIADLGCSSGPNSLLAV 35 (334)
T ss_dssp TEEEEEEES--SSHHHHHHH
T ss_pred CceEEEecCCCCCccHHHHH
Confidence 34589999999998877654
No 345
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=90.14 E-value=1.2 Score=38.43 Aligned_cols=103 Identities=19% Similarity=0.296 Sum_probs=59.7
Q ss_pred hcCCCcEEEEccCC-CHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371 56 IKGGELFLDYGTGS-GILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV 133 (222)
Q Consensus 56 ~~~~~~vLD~G~G~-G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 133 (222)
++++.+||-.|+|. |..+..+++. +...++++|.++...+.+++ .+.. . +.......+. ..
T Consensus 164 ~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~--~--~v~~~~~~~~----~~----- 226 (351)
T cd08285 164 IKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKE----YGAT--D--IVDYKNGDVV----EQ----- 226 (351)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCc--e--EecCCCCCHH----HH-----
Confidence 56788898887653 4455555554 55579999999887777764 2321 1 1111111110 00
Q ss_pred hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCC
Q 047371 134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGIL 185 (222)
Q Consensus 134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 185 (222)
+........+|+++....- ...+..+.+.|+++|.++..+..
T Consensus 227 -------i~~~~~~~~~d~vld~~g~---~~~~~~~~~~l~~~G~~v~~g~~ 268 (351)
T cd08285 227 -------ILKLTGGKGVDAVIIAGGG---QDTFEQALKVLKPGGTISNVNYY 268 (351)
T ss_pred -------HHHHhCCCCCcEEEECCCC---HHHHHHHHHHhhcCCEEEEeccc
Confidence 0011133468999863321 35677888899999998875443
No 346
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=90.13 E-value=1.2 Score=33.38 Aligned_cols=51 Identities=16% Similarity=0.201 Sum_probs=39.7
Q ss_pred CCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHH
Q 047371 146 ETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGILSEQLPRIINRY 196 (222)
Q Consensus 146 ~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~ 196 (222)
...++|+|+...-.....+.++.+...+.++..+++....-...+.+.+.+
T Consensus 64 ~~~~~D~viv~vKa~~~~~~l~~l~~~~~~~t~iv~~qNG~g~~~~l~~~~ 114 (151)
T PF02558_consen 64 DAGPYDLVIVAVKAYQLEQALQSLKPYLDPNTTIVSLQNGMGNEEVLAEYF 114 (151)
T ss_dssp HHSTESEEEE-SSGGGHHHHHHHHCTGEETTEEEEEESSSSSHHHHHHCHS
T ss_pred ccCCCcEEEEEecccchHHHHHHHhhccCCCcEEEEEeCCCCcHHHHHHHc
Confidence 356799999877666788899999999999998888766666666666555
No 347
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=89.91 E-value=1.4 Score=37.43 Aligned_cols=100 Identities=15% Similarity=0.241 Sum_probs=59.7
Q ss_pred hcCCCcEEEEccC--CCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371 56 IKGGELFLDYGTG--SGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV 133 (222)
Q Consensus 56 ~~~~~~vLD~G~G--~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 133 (222)
+++|++||-.|++ .|..+..+++....++++++.++...+.+++ .+.. .+ +...+...+. ...
T Consensus 136 ~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~----lGa~--~v-i~~~~~~~~~----~~~---- 200 (325)
T TIGR02825 136 VKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKK----LGFD--VA-FNYKTVKSLE----ETL---- 200 (325)
T ss_pred CCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCC--EE-EeccccccHH----HHH----
Confidence 5678999988853 3667777777644689999998887777753 2332 11 1111111110 000
Q ss_pred hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEec
Q 047371 134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISG 183 (222)
Q Consensus 134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 183 (222)
... ..+.+|+++.... ...+..+.++|+++|.++..+
T Consensus 201 --------~~~-~~~gvdvv~d~~G----~~~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 201 --------KKA-SPDGYDCYFDNVG----GEFSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred --------HHh-CCCCeEEEEECCC----HHHHHHHHHHhCcCcEEEEec
Confidence 000 2346999985432 234577889999999998754
No 348
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=89.83 E-value=0.92 Score=40.16 Aligned_cols=55 Identities=15% Similarity=0.169 Sum_probs=36.7
Q ss_pred hhHHHHHHHHhhhcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHH
Q 047371 44 TTKLCLLLLQSLIKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNA 101 (222)
Q Consensus 44 ~~~~~~~~l~~~~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~ 101 (222)
.++.-.++|. +.++++||-+. +.|..++.++..+.++|++||+||.++...+-..
T Consensus 23 Dp~vD~~aL~--i~~~d~vl~It-SaG~N~L~yL~~~P~~I~aVDlNp~Q~aLleLKl 77 (380)
T PF11899_consen 23 DPRVDMEALN--IGPDDRVLTIT-SAGCNALDYLLAGPKRIHAVDLNPAQNALLELKL 77 (380)
T ss_pred CcHHHHHHhC--CCCCCeEEEEc-cCCchHHHHHhcCCceEEEEeCCHHHHHHHHHHH
Confidence 3333344442 56899999995 4455555444455589999999999887765544
No 349
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=89.46 E-value=4 Score=34.85 Aligned_cols=114 Identities=12% Similarity=0.049 Sum_probs=67.1
Q ss_pred CcEEEEccCC-C-HHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccc
Q 047371 60 ELFLDYGTGS-G-ILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLS 137 (222)
Q Consensus 60 ~~vLD~G~G~-G-~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (222)
++|+-+|+|. | .++..|++.+ ..|+.++-+.+.++..++. .|+. ... +.......... ..
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G-~~V~lv~r~~~~~~~i~~~---~Gl~-----i~~-~g~~~~~~~~~-~~------- 64 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAG-LPVRLILRDRQRLAAYQQA---GGLT-----LVE-QGQASLYAIPA-ET------- 64 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCC-CCeEEEEechHHHHHHhhc---CCeE-----Eee-CCcceeeccCC-CC-------
Confidence 4688999997 4 4666777765 5789999877666555432 1221 110 00000000000 00
Q ss_pred cccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHH
Q 047371 138 SHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYS 197 (222)
Q Consensus 138 ~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~ 197 (222)
....+.+|+|+..-=-++..+.++.+..++.++..++.....-...+.+.+.+.
T Consensus 65 ------~~~~~~~D~viv~vK~~~~~~al~~l~~~l~~~t~vv~lQNGv~~~e~l~~~~~ 118 (305)
T PRK05708 65 ------ADAAEPIHRLLLACKAYDAEPAVASLAHRLAPGAELLLLQNGLGSQDAVAARVP 118 (305)
T ss_pred ------cccccccCEEEEECCHHhHHHHHHHHHhhCCCCCEEEEEeCCCCCHHHHHHhCC
Confidence 002457999987544445778889999999999988776555556566655543
No 350
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=89.34 E-value=2.4 Score=33.01 Aligned_cols=93 Identities=16% Similarity=0.227 Sum_probs=53.8
Q ss_pred CCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHH-HHHHHhcCCCCCceeEEecCCcccccccccccccchhccc
Q 047371 59 GELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSA-HQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLS 137 (222)
Q Consensus 59 ~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (222)
+++.+-+|...=-+-..+..++++++..+|.++--+..- +. ++.-. ....+.
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~d----------r~ssi--~p~df~--------------- 54 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFRD----------RLSSI--LPVDFA--------------- 54 (177)
T ss_pred CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCccccc----------ccccc--cHHHHH---------------
Confidence 566777776654455555567888999999876222111 11 11000 000000
Q ss_pred cccccCC-CCCCCeeEEEecccccc------------H--HHHHHHHHHcccCCeEEEEe
Q 047371 138 SHEIRGI-SETEEYDVVIANILLNP------------L--PQLADHIVSYAKPGAVVGIS 182 (222)
Q Consensus 138 ~~~~~~~-~~~~~~D~v~~~~~~~~------------~--~~~l~~~~~~LkpgG~l~~~ 182 (222)
.+| ...++||.+.+...+++ . ...+..+.+.|||||.+++.
T Consensus 55 ----~~~~~y~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~ 110 (177)
T PF03269_consen 55 ----KNWQKYAGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLG 110 (177)
T ss_pred ----HHHHHhhccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEE
Confidence 001 13567888887665544 1 23578899999999999995
No 351
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=88.98 E-value=1.5 Score=38.78 Aligned_cols=106 Identities=21% Similarity=0.393 Sum_probs=60.7
Q ss_pred hcCCCcEEEEccCC-CHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371 56 IKGGELFLDYGTGS-GILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV 133 (222)
Q Consensus 56 ~~~~~~vLD~G~G~-G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 133 (222)
++++++||-.|+|. |..+..+++. +...++++|.++..++.|++. +.. .+.......+. ....
T Consensus 183 ~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~----Ga~----~v~~~~~~~~~----~~v~--- 247 (393)
T TIGR02819 183 VGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSF----GCE----TVDLSKDATLP----EQIE--- 247 (393)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHc----CCe----EEecCCcccHH----HHHH---
Confidence 56788888877754 4455555554 655677788888888877652 321 11111100110 0000
Q ss_pred hccccccccCCCCCCCeeEEEecccccc-----------HHHHHHHHHHcccCCeEEEEecCC
Q 047371 134 EYLSSHEIRGISETEEYDVVIANILLNP-----------LPQLADHIVSYAKPGAVVGISGIL 185 (222)
Q Consensus 134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~-----------~~~~l~~~~~~LkpgG~l~~~~~~ 185 (222)
.......+|+++-...... ....++++.+++++||.+++.+..
T Consensus 248 ---------~~~~~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~~ 301 (393)
T TIGR02819 248 ---------QILGEPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGLY 301 (393)
T ss_pred ---------HHcCCCCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeeec
Confidence 0112345899986332210 124788889999999999986654
No 352
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=88.89 E-value=2.1 Score=37.23 Aligned_cols=98 Identities=11% Similarity=0.062 Sum_probs=54.9
Q ss_pred hcCCCcEEEEccCC-CHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371 56 IKGGELFLDYGTGS-GILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE 134 (222)
Q Consensus 56 ~~~~~~vLD~G~G~-G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 134 (222)
.+++++||-.|+|. |..+..+++....++++++.++.....+.+ ..+.. .+ +...+...+
T Consensus 181 ~~~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~---~~Ga~--~v-i~~~~~~~~------------- 241 (360)
T PLN02586 181 TEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAIN---RLGAD--SF-LVSTDPEKM------------- 241 (360)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHH---hCCCc--EE-EcCCCHHHH-------------
Confidence 45788898888765 556666666534578888887654332221 22321 11 110000000
Q ss_pred ccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecC
Q 047371 135 YLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGI 184 (222)
Q Consensus 135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 184 (222)
.. ..+.+|+++-... -...++.+.+.++++|.++..+.
T Consensus 242 -------~~--~~~~~D~vid~~g---~~~~~~~~~~~l~~~G~iv~vG~ 279 (360)
T PLN02586 242 -------KA--AIGTMDYIIDTVS---AVHALGPLLGLLKVNGKLITLGL 279 (360)
T ss_pred -------Hh--hcCCCCEEEECCC---CHHHHHHHHHHhcCCcEEEEeCC
Confidence 00 1124898885332 23457778889999999987544
No 353
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=88.62 E-value=8.7 Score=32.24 Aligned_cols=108 Identities=18% Similarity=0.144 Sum_probs=61.2
Q ss_pred cEEEEccCC-CH-HHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCC--CceeEEecCCcccccccccccccchhcc
Q 047371 61 LFLDYGTGS-GI-LGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGP--KKIKLHLVPDRTFTASMNERVDGVVEYL 136 (222)
Q Consensus 61 ~vLD~G~G~-G~-~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (222)
+|.-+|+|. |. ++..+++.+ .+|+.++.++..++..++. ++.. ..... .....
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g-~~V~~~~r~~~~~~~~~~~----g~~~~~~~~~~---~~~~~--------------- 58 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAG-HDVTLVARRGAHLDALNEN----GLRLEDGEITV---PVLAA--------------- 58 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCC-CeEEEEECChHHHHHHHHc----CCcccCCceee---cccCC---------------
Confidence 477788876 32 444455555 5799999877666554432 3210 00000 00000
Q ss_pred ccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHH
Q 047371 137 SSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGILSEQLPRIINRY 196 (222)
Q Consensus 137 ~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~ 196 (222)
.+......+|+|+..........+++.+...+.++..++.....-...+.+.+.+
T Consensus 59 -----~~~~~~~~~d~vila~k~~~~~~~~~~l~~~l~~~~~iv~~~nG~~~~~~l~~~~ 113 (304)
T PRK06522 59 -----DDPAELGPQDLVILAVKAYQLPAALPSLAPLLGPDTPVLFLQNGVGHLEELAAYI 113 (304)
T ss_pred -----CChhHcCCCCEEEEecccccHHHHHHHHhhhcCCCCEEEEecCCCCcHHHHHHhc
Confidence 0000225789999876666678889999998988877766444433344444433
No 354
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=88.41 E-value=3.3 Score=33.98 Aligned_cols=110 Identities=14% Similarity=0.154 Sum_probs=67.7
Q ss_pred CCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcccc
Q 047371 59 GELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSS 138 (222)
Q Consensus 59 ~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (222)
.+.|+++|.|.|.++..+...+.+++..+|.++..+.-.+....... .++.+...|+..+.. +.. -+.
T Consensus 51 ~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa~---~~~~IHh~D~LR~~I---~~~------~~~ 118 (326)
T KOG0821|consen 51 NAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAAP---GKLRIHHGDVLRFKI---EKA------FSE 118 (326)
T ss_pred cceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcCC---cceEEeccccceehH---Hhh------cch
Confidence 56899999999999999998888899999999987776665444322 366677777654422 000 011
Q ss_pred ccccCCCCCCCeeEEEeccccccHHH-HHHHHHHcccCCeEEE
Q 047371 139 HEIRGISETEEYDVVIANILLNPLPQ-LADHIVSYAKPGAVVG 180 (222)
Q Consensus 139 ~~~~~~~~~~~~D~v~~~~~~~~~~~-~l~~~~~~LkpgG~l~ 180 (222)
...++|..+-+.=-++-|.|+..... +++.+..+--..|.+.
T Consensus 119 ~~~Rpw~d~~p~~H~IGNLPf~i~~pliik~l~~~s~r~G~~~ 161 (326)
T KOG0821|consen 119 SLKRPWEDDPPNVHIIGNLPFSVSTPLIIKWLENISCRDGPFV 161 (326)
T ss_pred hhcCCcccCCCceEEeccCCccccchHHHHHHhhcccccCCee
Confidence 22345665555555666888754322 3344444333444433
No 355
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=87.84 E-value=2.8 Score=35.56 Aligned_cols=105 Identities=18% Similarity=0.205 Sum_probs=64.0
Q ss_pred CcEEEEccCC--CHHHHHHHHhC-CCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcc
Q 047371 60 ELFLDYGTGS--GILGIAAIKFG-AAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYL 136 (222)
Q Consensus 60 ~~vLD~G~G~--G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (222)
.+|+-+|.|- |.++..+.+.+ ...+++.|.+...++.+... ++. .........
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~l----gv~-----d~~~~~~~~--------------- 59 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALEL----GVI-----DELTVAGLA--------------- 59 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhc----Ccc-----cccccchhh---------------
Confidence 4677778774 34566666554 34589999988777776532 222 111100000
Q ss_pred ccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHhh
Q 047371 137 SSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSEF 199 (222)
Q Consensus 137 ~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~ 199 (222)
......|+|+..-|......+++++...|++|..+.= .......+.+.+++.
T Consensus 60 --------~~~~~aD~VivavPi~~~~~~l~~l~~~l~~g~iv~D---v~S~K~~v~~a~~~~ 111 (279)
T COG0287 60 --------EAAAEADLVIVAVPIEATEEVLKELAPHLKKGAIVTD---VGSVKSSVVEAMEKY 111 (279)
T ss_pred --------hhcccCCEEEEeccHHHHHHHHHHhcccCCCCCEEEe---cccccHHHHHHHHHh
Confidence 0345589999999998889999999999999854432 222333444444444
No 356
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=87.80 E-value=4.3 Score=35.98 Aligned_cols=45 Identities=24% Similarity=0.392 Sum_probs=33.6
Q ss_pred hcCCCcEEEEc-cCC-CHHHHHHHHh---CCCEEEEEeCChHHHHHHHHH
Q 047371 56 IKGGELFLDYG-TGS-GILGIAAIKF---GAAMFVGVDIDPQVIKSAHQN 100 (222)
Q Consensus 56 ~~~~~~vLD~G-~G~-G~~~~~la~~---~~~~v~gvD~s~~~l~~a~~~ 100 (222)
++++.+|+-+| +|. |..+..+++. +..+++++|.++..++.+++.
T Consensus 173 ~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~ 222 (410)
T cd08238 173 IKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRL 222 (410)
T ss_pred CCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHh
Confidence 46788898887 343 6666666664 335899999999999988774
No 357
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=87.56 E-value=1.9 Score=37.65 Aligned_cols=102 Identities=17% Similarity=0.219 Sum_probs=59.2
Q ss_pred hcCCCcEEEEccCC-CHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCC-cccccccccccccc
Q 047371 56 IKGGELFLDYGTGS-GILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPD-RTFTASMNERVDGV 132 (222)
Q Consensus 56 ~~~~~~vLD~G~G~-G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~ 132 (222)
++++++||-.|+|. |..+..+++. +..+|+++|.++..++.+++. +.. ..+...+. ..+. .....
T Consensus 183 ~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~----Ga~---~~i~~~~~~~~~~----~~v~~- 250 (368)
T TIGR02818 183 VEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKL----GAT---DCVNPNDYDKPIQ----EVIVE- 250 (368)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh----CCC---eEEcccccchhHH----HHHHH-
Confidence 56789999998764 4555666665 544899999999988888552 321 11111100 0000 00000
Q ss_pred hhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCC-eEEEEecC
Q 047371 133 VEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPG-AVVGISGI 184 (222)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~ 184 (222)
+ ..+.+|+++-...- ...+....+.++++ |.+++.+.
T Consensus 251 -----------~-~~~g~d~vid~~G~---~~~~~~~~~~~~~~~G~~v~~g~ 288 (368)
T TIGR02818 251 -----------I-TDGGVDYSFECIGN---VNVMRAALECCHKGWGESIIIGV 288 (368)
T ss_pred -----------H-hCCCCCEEEECCCC---HHHHHHHHHHhhcCCCeEEEEec
Confidence 1 12358988854321 34567778888886 88887554
No 358
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=87.32 E-value=8.8 Score=28.51 Aligned_cols=93 Identities=16% Similarity=0.137 Sum_probs=47.6
Q ss_pred CCcEEEEccCCC-HHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccc
Q 047371 59 GELFLDYGTGSG-ILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLS 137 (222)
Q Consensus 59 ~~~vLD~G~G~G-~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (222)
..+++|+|-|.= ..+..|.+.+ -.|+++|+++. ++. .+ +.+...|...... .
T Consensus 14 ~~kiVEVGiG~~~~vA~~L~~~G-~dV~~tDi~~~-------~a~-~g-----~~~v~DDif~P~l-------~------ 66 (127)
T PF03686_consen 14 YGKIVEVGIGFNPEVAKKLKERG-FDVIATDINPR-------KAP-EG-----VNFVVDDIFNPNL-------E------ 66 (127)
T ss_dssp SSEEEEET-TT--HHHHHHHHHS--EEEEE-SS-S------------S-----TTEE---SSS--H-------H------
T ss_pred CCcEEEECcCCCHHHHHHHHHcC-CcEEEEECccc-------ccc-cC-----cceeeecccCCCH-------H------
Confidence 449999999985 5777787887 68999999996 221 23 3366555533211 0
Q ss_pred cccccCCCCCCCeeEEEe-ccccccHHHHHHHHHHcccCCeEEEEecCCCCcH
Q 047371 138 SHEIRGISETEEYDVVIA-NILLNPLPQLADHIVSYAKPGAVVGISGILSEQL 189 (222)
Q Consensus 138 ~~~~~~~~~~~~~D~v~~-~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 189 (222)
-....|+|.+ ++|.+-...+++ +++ +-|.-+++..+..+..
T Consensus 67 --------iY~~a~lIYSiRPP~El~~~il~-lA~--~v~adlii~pL~~e~~ 108 (127)
T PF03686_consen 67 --------IYEGADLIYSIRPPPELQPPILE-LAK--KVGADLIIRPLGGESP 108 (127)
T ss_dssp --------HHTTEEEEEEES--TTSHHHHHH-HHH--HHT-EEEEE-BTTB--
T ss_pred --------HhcCCcEEEEeCCChHHhHHHHH-HHH--HhCCCEEEECCCCCCC
Confidence 1346899998 666664444443 444 3455677766655553
No 359
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=87.31 E-value=2.3 Score=36.29 Aligned_cols=101 Identities=23% Similarity=0.389 Sum_probs=56.0
Q ss_pred hcCCCcEEEEccCC-CHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371 56 IKGGELFLDYGTGS-GILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV 133 (222)
Q Consensus 56 ~~~~~~vLD~G~G~-G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 133 (222)
++++.+||..|+|. |..++.+++. +...+++++.++...+.+++. +.. . +.......+. ..
T Consensus 165 ~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~----g~~--~--vi~~~~~~~~----~~----- 227 (347)
T cd05278 165 IKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEA----GAT--D--IINPKNGDIV----EQ----- 227 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHh----CCc--E--EEcCCcchHH----HH-----
Confidence 56788888876542 4455555654 434788998887776655532 211 1 1111111110 00
Q ss_pred hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEec
Q 047371 134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISG 183 (222)
Q Consensus 134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 183 (222)
+....+.+.+|+++..... ...+..+.+.|+++|.++..+
T Consensus 228 -------i~~~~~~~~~d~vld~~g~---~~~~~~~~~~l~~~G~~v~~g 267 (347)
T cd05278 228 -------ILELTGGRGVDCVIEAVGF---EETFEQAVKVVRPGGTIANVG 267 (347)
T ss_pred -------HHHHcCCCCCcEEEEccCC---HHHHHHHHHHhhcCCEEEEEc
Confidence 0011134568999854322 246777888999999988643
No 360
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=87.26 E-value=4.6 Score=35.83 Aligned_cols=118 Identities=22% Similarity=0.255 Sum_probs=67.0
Q ss_pred HHHHHHhh-hcCCCcEEEEccCCCHHHHHHHHh-CCCEEEEEeCChHHHHHHHH-------HHHhcCCCCCceeEEecCC
Q 047371 48 CLLLLQSL-IKGGELFLDYGTGSGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQ-------NAALNNIGPKKIKLHLVPD 118 (222)
Q Consensus 48 ~~~~l~~~-~~~~~~vLD~G~G~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~-------~~~~~~~~~~~v~~~~~~~ 118 (222)
+....++. +.+++...|+|.|.|.....++.+ +...=+|+++....-+.|.. .....|.....+....++.
T Consensus 181 l~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf 260 (419)
T KOG3924|consen 181 LRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSF 260 (419)
T ss_pred HHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeeccccc
Confidence 34444444 678899999999999987776654 44556777775544333322 2223333222334444433
Q ss_pred cccccccccccccchhccccccccCCCCCCCeeEEEeccc-ccc-HHHHHHHHHHcccCCeEEEEecC
Q 047371 119 RTFTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANIL-LNP-LPQLADHIVSYAKPGAVVGISGI 184 (222)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~-~~~-~~~~l~~~~~~LkpgG~l~~~~~ 184 (222)
... .....+ ....++|++|.. ++. +.--++++..-+++|..++-...
T Consensus 261 ~~~-----~~v~eI--------------~~eatvi~vNN~~Fdp~L~lr~~eil~~ck~gtrIiS~~~ 309 (419)
T KOG3924|consen 261 LDP-----KRVTEI--------------QTEATVIFVNNVAFDPELKLRSKEILQKCKDGTRIISSKP 309 (419)
T ss_pred CCH-----HHHHHH--------------hhcceEEEEecccCCHHHHHhhHHHHhhCCCcceEecccc
Confidence 222 111111 334788888654 332 22225688888999999887543
No 361
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=87.09 E-value=10 Score=32.56 Aligned_cols=115 Identities=15% Similarity=0.119 Sum_probs=69.1
Q ss_pred CcEEEEccCC-C-HHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccc
Q 047371 60 ELFLDYGTGS-G-ILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLS 137 (222)
Q Consensus 60 ~~vLD~G~G~-G-~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (222)
++|+-+|+|. | .++..|++.+ ..|+.+--++ .++..++. |+. +..... ........
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g-~~V~~~~R~~-~~~~l~~~----GL~-----i~~~~~-~~~~~~~~---------- 58 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAG-HDVTLLVRSR-RLEALKKK----GLR-----IEDEGG-NFTTPVVA---------- 58 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC-CeEEEEecHH-HHHHHHhC----CeE-----EecCCC-cccccccc----------
Confidence 3688899997 4 5677788777 5555554444 35555443 331 111111 00000000
Q ss_pred cccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHHhh
Q 047371 138 SHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYSEF 199 (222)
Q Consensus 138 ~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~ 199 (222)
...-.....+|+|+...=-+...+.++.+...+++...+++....-...+.+...+...
T Consensus 59 ---~~~~~~~~~~Dlviv~vKa~q~~~al~~l~~~~~~~t~vl~lqNG~g~~e~l~~~~~~~ 117 (307)
T COG1893 59 ---ATDAEALGPADLVIVTVKAYQLEEALPSLAPLLGPNTVVLFLQNGLGHEEELRKILPKE 117 (307)
T ss_pred ---ccChhhcCCCCEEEEEeccccHHHHHHHhhhcCCCCcEEEEEeCCCcHHHHHHHhCCcc
Confidence 00001345799999877666688999999999999999888666666666666665544
No 362
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=86.50 E-value=4.2 Score=34.60 Aligned_cols=96 Identities=23% Similarity=0.321 Sum_probs=56.0
Q ss_pred CCCcEEEEccCC-CHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371 58 GGELFLDYGTGS-GILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY 135 (222)
Q Consensus 58 ~~~~vLD~G~G~-G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 135 (222)
++.+||..|+|. |..+..+++. +...+++++.++...+.+++. +.. . +.......+. ..
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~----g~~--~--vi~~~~~~~~--------~~--- 225 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAM----GAD--E--TVNLARDPLA--------AY--- 225 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----CCC--E--EEcCCchhhh--------hh---
Confidence 688888887764 5555556654 444799999988877755442 221 1 1111100000 00
Q ss_pred cccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEec
Q 047371 136 LSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISG 183 (222)
Q Consensus 136 ~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 183 (222)
....+.+|+++..... ...++.+.+.|+++|.++..+
T Consensus 226 --------~~~~~~vd~vld~~g~---~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 226 --------AADKGDFDVVFEASGA---PAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred --------hccCCCccEEEECCCC---HHHHHHHHHHHhcCCEEEEEe
Confidence 0012358999864322 345778889999999988643
No 363
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=86.48 E-value=16 Score=32.75 Aligned_cols=119 Identities=17% Similarity=0.100 Sum_probs=64.9
Q ss_pred CcEEEEccCCCH--HHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccc
Q 047371 60 ELFLDYGTGSGI--LGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLS 137 (222)
Q Consensus 60 ~~vLD~G~G~G~--~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (222)
++|.-+|.|.-. ++..+++.+ -+|+++|.++..++.... +. +.+...+.+.+. ...+. .+
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G-~~V~~~D~~~~~v~~l~~-----g~----~~~~e~~l~~~l-------~~~~~-~g 65 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQ-KQVIGVDINQHAVDTINR-----GE----IHIVEPDLDMVV-------KTAVE-GG 65 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCC-CEEEEEeCCHHHHHHHHC-----CC----CCcCCCCHHHHH-------HHHhh-cC
Confidence 357777877632 444555665 589999999988775322 11 111111100000 00000 00
Q ss_pred cccccCCCCCCCeeEEEecccc----------ccHHHHHHHHHHcccCCeEEEE-ecCCCCcHHHHHHHHHh
Q 047371 138 SHEIRGISETEEYDVVIANILL----------NPLPQLADHIVSYAKPGAVVGI-SGILSEQLPRIINRYSE 198 (222)
Q Consensus 138 ~~~~~~~~~~~~~D~v~~~~~~----------~~~~~~l~~~~~~LkpgG~l~~-~~~~~~~~~~~~~~~~~ 198 (222)
.....+ .....|+++...+. ......++.+...+++|..++. ++......+++...+.+
T Consensus 66 ~l~~~~--~~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~ 135 (415)
T PRK11064 66 YLRATT--TPEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAE 135 (415)
T ss_pred ceeeec--ccccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHH
Confidence 000000 12357888875544 2355667888999999887766 56677777777776654
No 364
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=86.39 E-value=8.7 Score=32.35 Aligned_cols=49 Identities=14% Similarity=0.088 Sum_probs=33.6
Q ss_pred CCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHH
Q 047371 148 EEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGILSEQLPRIINRY 196 (222)
Q Consensus 148 ~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~ 196 (222)
..+|+++....-.....+++.+...+.++..++.....-...+.+.+.+
T Consensus 67 ~~~d~vilavk~~~~~~~~~~l~~~~~~~~~ii~~~nG~~~~~~l~~~~ 115 (305)
T PRK12921 67 GPFDLVILAVKAYQLDAAIPDLKPLVGEDTVIIPLQNGIGQLEQLEPYF 115 (305)
T ss_pred CCCCEEEEEecccCHHHHHHHHHhhcCCCCEEEEeeCCCChHHHHHHhC
Confidence 5689998876666678888999988888877765434433444454443
No 365
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=86.27 E-value=3.3 Score=35.78 Aligned_cols=102 Identities=23% Similarity=0.233 Sum_probs=60.0
Q ss_pred hcCCCcEEEEccCC--CHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371 56 IKGGELFLDYGTGS--GILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV 133 (222)
Q Consensus 56 ~~~~~~vLD~G~G~--G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 133 (222)
+++|++||-.|+.. |.+++.+++.-...++++--+++..+.+++. +.. .-+.+...+ +. +..
T Consensus 140 l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~l----GAd-~vi~y~~~~---~~----~~v---- 203 (326)
T COG0604 140 LKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKEL----GAD-HVINYREED---FV----EQV---- 203 (326)
T ss_pred CCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhc----CCC-EEEcCCccc---HH----HHH----
Confidence 57799999998555 4677778876323777777777666654443 321 011111111 10 111
Q ss_pred hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCC
Q 047371 134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGIL 185 (222)
Q Consensus 134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 185 (222)
..+.....+|+|+... -.+.+....+.|+++|.++..+..
T Consensus 204 --------~~~t~g~gvDvv~D~v----G~~~~~~~l~~l~~~G~lv~ig~~ 243 (326)
T COG0604 204 --------RELTGGKGVDVVLDTV----GGDTFAASLAALAPGGRLVSIGAL 243 (326)
T ss_pred --------HHHcCCCCceEEEECC----CHHHHHHHHHHhccCCEEEEEecC
Confidence 1112345699999643 245666688889999999985443
No 366
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=86.19 E-value=7 Score=33.39 Aligned_cols=50 Identities=18% Similarity=0.018 Sum_probs=37.4
Q ss_pred CCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHH
Q 047371 147 TEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGILSEQLPRIINRY 196 (222)
Q Consensus 147 ~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~ 196 (222)
...+|+|+..-..+...+.++.+...+++++.++.....-...+.+.+.+
T Consensus 70 ~~~~D~vilavK~~~~~~~~~~l~~~~~~~~~iv~lqNG~~~~e~l~~~~ 119 (313)
T PRK06249 70 MPPCDWVLVGLKTTANALLAPLIPQVAAPDAKVLLLQNGLGVEEQLREIL 119 (313)
T ss_pred cCCCCEEEEEecCCChHhHHHHHhhhcCCCCEEEEecCCCCcHHHHHHHC
Confidence 35689999876666677888899999999998877655555556665554
No 367
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=86.07 E-value=2.4 Score=36.87 Aligned_cols=103 Identities=17% Similarity=0.252 Sum_probs=59.3
Q ss_pred hcCCCcEEEEccCC-CHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCc-ccccccccccccc
Q 047371 56 IKGGELFLDYGTGS-GILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDR-TFTASMNERVDGV 132 (222)
Q Consensus 56 ~~~~~~vLD~G~G~-G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~ 132 (222)
++++++||-.|+|. |..+..+++. +..+++++|.++..++.+++ .+.. . .+...+.. .+. .....+
T Consensus 184 ~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~----lGa~--~-~i~~~~~~~~~~----~~v~~~ 252 (368)
T cd08300 184 VEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKK----FGAT--D-CVNPKDHDKPIQ----QVLVEM 252 (368)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCC--E-EEcccccchHHH----HHHHHH
Confidence 56789999998754 4455555554 54479999999998887754 2321 1 11111100 010 000011
Q ss_pred hhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCC-eEEEEecCC
Q 047371 133 VEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPG-AVVGISGIL 185 (222)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~~ 185 (222)
..+.+|+++-... -...+..+.+.++++ |.++..+..
T Consensus 253 -------------~~~g~d~vid~~g---~~~~~~~a~~~l~~~~G~~v~~g~~ 290 (368)
T cd08300 253 -------------TDGGVDYTFECIG---NVKVMRAALEACHKGWGTSVIIGVA 290 (368)
T ss_pred -------------hCCCCcEEEECCC---ChHHHHHHHHhhccCCCeEEEEccC
Confidence 1236899986322 134677778889887 888876543
No 368
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=86.03 E-value=6.2 Score=32.46 Aligned_cols=95 Identities=22% Similarity=0.163 Sum_probs=56.8
Q ss_pred hcCCCcEEEEccCC-CHHHHHHHHhCCCE-EEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371 56 IKGGELFLDYGTGS-GILGIAAIKFGAAM-FVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV 133 (222)
Q Consensus 56 ~~~~~~vLD~G~G~-G~~~~~la~~~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 133 (222)
++++.++|-.|+|. |..+..+++....+ +++++.+++..+.+++. +.. ..+ +.... ..
T Consensus 95 ~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~----g~~-~~~-~~~~~-~~------------- 154 (277)
T cd08255 95 PRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEAL----GPA-DPV-AADTA-DE------------- 154 (277)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHc----CCC-ccc-cccch-hh-------------
Confidence 55788888887754 45555555543345 99999998887766543 211 011 00000 00
Q ss_pred hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecC
Q 047371 134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGI 184 (222)
Q Consensus 134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 184 (222)
.....+|+++..... ...+....+.++++|.++..+.
T Consensus 155 -----------~~~~~~d~vl~~~~~---~~~~~~~~~~l~~~g~~~~~g~ 191 (277)
T cd08255 155 -----------IGGRGADVVIEASGS---PSALETALRLLRDRGRVVLVGW 191 (277)
T ss_pred -----------hcCCCCCEEEEccCC---hHHHHHHHHHhcCCcEEEEEec
Confidence 023468998854322 3467778889999999887543
No 369
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=85.99 E-value=5.9 Score=37.30 Aligned_cols=93 Identities=8% Similarity=0.004 Sum_probs=53.1
Q ss_pred CcEEEEccCCCHHHHHHHH---hCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcc
Q 047371 60 ELFLDYGTGSGILGIAAIK---FGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYL 136 (222)
Q Consensus 60 ~~vLD~G~G~G~~~~~la~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (222)
.+|+-+|+ |.++..+++ ....+++.+|.+++.++.+++ .+ .....+|..+... +..
T Consensus 401 ~~vII~G~--Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~----~g-----~~v~~GDat~~~~-----L~~----- 459 (601)
T PRK03659 401 PQVIIVGF--GRFGQVIGRLLMANKMRITVLERDISAVNLMRK----YG-----YKVYYGDATQLEL-----LRA----- 459 (601)
T ss_pred CCEEEecC--chHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh----CC-----CeEEEeeCCCHHH-----HHh-----
Confidence 35555555 444444443 223579999999999888764 23 3467777755421 111
Q ss_pred ccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEE
Q 047371 137 SSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGI 181 (222)
Q Consensus 137 ~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 181 (222)
..-++.|.+++...-+.....+-...|.+.|...++.
T Consensus 460 --------agi~~A~~vv~~~~d~~~n~~i~~~~r~~~p~~~Iia 496 (601)
T PRK03659 460 --------AGAEKAEAIVITCNEPEDTMKIVELCQQHFPHLHILA 496 (601)
T ss_pred --------cCCccCCEEEEEeCCHHHHHHHHHHHHHHCCCCeEEE
Confidence 1345678888744333222234445555677777766
No 370
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=85.53 E-value=3 Score=35.32 Aligned_cols=99 Identities=22% Similarity=0.332 Sum_probs=56.7
Q ss_pred hcCCCcEEEEccCC-CHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371 56 IKGGELFLDYGTGS-GILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV 133 (222)
Q Consensus 56 ~~~~~~vLD~G~G~-G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 133 (222)
+.++.+||..|+|. |..+..+++. +...+++++.++...+.+++. +.. .....+..... .. .
T Consensus 157 ~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~----g~~----~~~~~~~~~~~----~~-~--- 220 (334)
T cd08234 157 IKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKL----GAT----ETVDPSREDPE----AQ-K--- 220 (334)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----CCe----EEecCCCCCHH----HH-H---
Confidence 45788999987542 4455555554 433489999998877766432 221 11111111100 00 0
Q ss_pred hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEec
Q 047371 134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISG 183 (222)
Q Consensus 134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 183 (222)
....+.+|+++.... ....+..+.+.|+++|.++..+
T Consensus 221 ----------~~~~~~vd~v~~~~~---~~~~~~~~~~~l~~~G~~v~~g 257 (334)
T cd08234 221 ----------EDNPYGFDVVIEATG---VPKTLEQAIEYARRGGTVLVFG 257 (334)
T ss_pred ----------HhcCCCCcEEEECCC---ChHHHHHHHHHHhcCCEEEEEe
Confidence 003456899996432 1356777888999999988743
No 371
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=85.35 E-value=13 Score=30.25 Aligned_cols=99 Identities=11% Similarity=0.129 Sum_probs=60.5
Q ss_pred CCcEEEEccCCCH--HHHHH--H-HhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCC-cccccccccccccc
Q 047371 59 GELFLDYGTGSGI--LGIAA--I-KFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPD-RTFTASMNERVDGV 132 (222)
Q Consensus 59 ~~~vLD~G~G~G~--~~~~l--a-~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~ 132 (222)
.+.+++..++.|. .++.| | +.-.++++.+-.++..+...++.+...++. +.++|..++. +.+..
T Consensus 42 AkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~-~~vEfvvg~~~e~~~~--------- 111 (218)
T PF07279_consen 42 AKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLS-DVVEFVVGEAPEEVMP--------- 111 (218)
T ss_pred ceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhcccc-ccceEEecCCHHHHHh---------
Confidence 3578888665442 33333 3 344578899999988888888888777765 3567777653 22211
Q ss_pred hhccccccccCCCCCCCeeEEEeccccccHH-HHHHHHHHcccCCeEEEEe
Q 047371 133 VEYLSSHEIRGISETEEYDVVIANILLNPLP-QLADHIVSYAKPGAVVGIS 182 (222)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~-~~l~~~~~~LkpgG~l~~~ 182 (222)
....+|.++.+.-...+. .+++.+. +.|.|-+++.
T Consensus 112 -------------~~~~iDF~vVDc~~~d~~~~vl~~~~--~~~~GaVVV~ 147 (218)
T PF07279_consen 112 -------------GLKGIDFVVVDCKREDFAARVLRAAK--LSPRGAVVVC 147 (218)
T ss_pred -------------hccCCCEEEEeCCchhHHHHHHHHhc--cCCCceEEEE
Confidence 345688888766554444 5555433 4445665553
No 372
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=85.25 E-value=3.7 Score=35.70 Aligned_cols=103 Identities=20% Similarity=0.338 Sum_probs=58.2
Q ss_pred hcCCCcEEEEccCC-CHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCC-cccccccccccccc
Q 047371 56 IKGGELFLDYGTGS-GILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPD-RTFTASMNERVDGV 132 (222)
Q Consensus 56 ~~~~~~vLD~G~G~-G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~ 132 (222)
++++++||-.|+|. |..+..+++. +..+|+++|.++...+.++. .+.. .+ +...+. ..+. ...
T Consensus 182 ~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~----~ga~--~~-i~~~~~~~~~~----~~~--- 247 (365)
T cd08277 182 VEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKE----FGAT--DF-INPKDSDKPVS----EVI--- 247 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCC--cE-eccccccchHH----HHH---
Confidence 56789999888653 4445555554 54479999999988887754 2321 11 111000 0000 000
Q ss_pred hhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCC-eEEEEecCC
Q 047371 133 VEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPG-AVVGISGIL 185 (222)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~~ 185 (222)
..... +.+|+++-... -...+..+.+.++++ |.+++.+..
T Consensus 248 ---------~~~~~-~g~d~vid~~g---~~~~~~~~~~~l~~~~G~~v~~g~~ 288 (365)
T cd08277 248 ---------REMTG-GGVDYSFECTG---NADLMNEALESTKLGWGVSVVVGVP 288 (365)
T ss_pred ---------HHHhC-CCCCEEEECCC---ChHHHHHHHHhcccCCCEEEEEcCC
Confidence 00112 46899985332 135667788889885 888876543
No 373
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=85.08 E-value=3.4 Score=35.54 Aligned_cols=102 Identities=21% Similarity=0.215 Sum_probs=57.9
Q ss_pred hcCCCcEEEEccCC-CHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371 56 IKGGELFLDYGTGS-GILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV 133 (222)
Q Consensus 56 ~~~~~~vLD~G~G~-G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 133 (222)
++++.+||-.|+|. |..+..+++. +..++++++.++...+.+++. +.. ..+...+. .+. ..
T Consensus 170 ~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~----ga~---~~i~~~~~-~~~-------~~-- 232 (351)
T cd08233 170 FKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEEL----GAT---IVLDPTEV-DVV-------AE-- 232 (351)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CCC---EEECCCcc-CHH-------HH--
Confidence 46788888887543 3444445554 544899999998887777542 321 11111110 110 00
Q ss_pred hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecC
Q 047371 134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGI 184 (222)
Q Consensus 134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 184 (222)
+......+.+|+++..... ...++.+.+.|+++|.++..+.
T Consensus 233 -------l~~~~~~~~~d~vid~~g~---~~~~~~~~~~l~~~G~~v~~g~ 273 (351)
T cd08233 233 -------VRKLTGGGGVDVSFDCAGV---QATLDTAIDALRPRGTAVNVAI 273 (351)
T ss_pred -------HHHHhCCCCCCEEEECCCC---HHHHHHHHHhccCCCEEEEEcc
Confidence 0011133458999964422 3467778889999999887544
No 374
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=84.81 E-value=9.7 Score=29.84 Aligned_cols=93 Identities=16% Similarity=0.242 Sum_probs=54.5
Q ss_pred EEEEccCC-C-HHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHh-------cC-CC-------CCceeEEecCCcccccc
Q 047371 62 FLDYGTGS-G-ILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAAL-------NN-IG-------PKKIKLHLVPDRTFTAS 124 (222)
Q Consensus 62 vLD~G~G~-G-~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~-------~~-~~-------~~~v~~~~~~~~~~~~~ 124 (222)
|.-+|+|+ | .++..++..| -+|+.+|.++..++.+++.+.. .+ +. ..++.+. .+
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G-~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~d------- 72 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAG-YEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFT-TD------- 72 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTT-SEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEE-SS-------
T ss_pred EEEEcCCHHHHHHHHHHHhCC-CcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccc-cC-------
Confidence 55678876 3 3555666665 6899999999999988777653 11 10 0011110 11
Q ss_pred cccccccchhccccccccCCCCCCCeeEEEeccccc--cHHHHHHHHHHcccCCeEEEEe
Q 047371 125 MNERVDGVVEYLSSHEIRGISETEEYDVVIANILLN--PLPQLADHIVSYAKPGAVVGIS 182 (222)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~ 182 (222)
+......|+|+-..+-+ ...+++.++.+++.|+..+..+
T Consensus 73 -------------------l~~~~~adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasn 113 (180)
T PF02737_consen 73 -------------------LEEAVDADLVIEAIPEDLELKQELFAELDEICPPDTILASN 113 (180)
T ss_dssp -------------------GGGGCTESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE-
T ss_pred -------------------HHHHhhhheehhhccccHHHHHHHHHHHHHHhCCCceEEec
Confidence 11222689999765433 2456899999999999887774
No 375
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=84.77 E-value=3.4 Score=35.19 Aligned_cols=101 Identities=27% Similarity=0.329 Sum_probs=58.4
Q ss_pred hcCCCcEEEEccCC-CHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371 56 IKGGELFLDYGTGS-GILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE 134 (222)
Q Consensus 56 ~~~~~~vLD~G~G~-G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 134 (222)
+.++.+||..|+|. |..+..+++....+++++.-+++..+.+++. +.. . +.......+. ..
T Consensus 157 l~~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~~----g~~--~--v~~~~~~~~~----~~------ 218 (337)
T cd08261 157 VTAGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFAREL----GAD--D--TINVGDEDVA----AR------ 218 (337)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHh----CCC--E--EecCcccCHH----HH------
Confidence 56788999987653 5566666665446789998888777766432 221 1 1111100110 00
Q ss_pred ccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEec
Q 047371 135 YLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISG 183 (222)
Q Consensus 135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 183 (222)
+..+.+...+|+++.... -...+..+.+.|+++|.++..+
T Consensus 219 ------l~~~~~~~~vd~vld~~g---~~~~~~~~~~~l~~~G~~i~~g 258 (337)
T cd08261 219 ------LRELTDGEGADVVIDATG---NPASMEEAVELVAHGGRVVLVG 258 (337)
T ss_pred ------HHHHhCCCCCCEEEECCC---CHHHHHHHHHHHhcCCEEEEEc
Confidence 001113456899986431 1356777888999999988643
No 376
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=84.72 E-value=10 Score=32.00 Aligned_cols=87 Identities=15% Similarity=0.180 Sum_probs=56.3
Q ss_pred hcCCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371 56 IKGGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY 135 (222)
Q Consensus 56 ~~~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 135 (222)
+.+|+..+|+|+-+|..+-.+.+.+ -.|+++|-.+-+ . ++-..| .++-...|.-.+.
T Consensus 209 L~~~M~avDLGAcPGGWTyqLVkr~-m~V~aVDng~ma----~-sL~dtg----~v~h~r~DGfk~~------------- 265 (358)
T COG2933 209 LAPGMWAVDLGACPGGWTYQLVKRN-MRVYAVDNGPMA----Q-SLMDTG----QVTHLREDGFKFR------------- 265 (358)
T ss_pred hcCCceeeecccCCCccchhhhhcc-eEEEEeccchhh----h-hhhccc----ceeeeeccCcccc-------------
Confidence 3478899999999999999988875 579999976522 1 111222 4555555443332
Q ss_pred cccccccCCCC-CCCeeEEEeccccccHHHHHHHHHHcccCC
Q 047371 136 LSSHEIRGISE-TEEYDVVIANILLNPLPQLADHIVSYAKPG 176 (222)
Q Consensus 136 ~~~~~~~~~~~-~~~~D~v~~~~~~~~~~~~l~~~~~~Lkpg 176 (222)
| ..+.|..+|+.+-. ...+.+.+...|..|
T Consensus 266 ----------P~r~~idWmVCDmVEk-P~rv~~li~~Wl~nG 296 (358)
T COG2933 266 ----------PTRSNIDWMVCDMVEK-PARVAALIAKWLVNG 296 (358)
T ss_pred ----------cCCCCCceEEeehhcC-cHHHHHHHHHHHHcc
Confidence 4 66799999988654 334444455555554
No 377
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=84.63 E-value=6.1 Score=33.63 Aligned_cols=89 Identities=24% Similarity=0.295 Sum_probs=54.7
Q ss_pred CcEEEEccCC-C-HHHHHHHHhCC-CEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcc
Q 047371 60 ELFLDYGTGS-G-ILGIAAIKFGA-AMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYL 136 (222)
Q Consensus 60 ~~vLD~G~G~-G-~~~~~la~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (222)
.+|.-+|+|. | .++..+.+.+. .+|+++|.++..++.+++ .+.. ... ..+...
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~----~g~~---~~~-~~~~~~---------------- 62 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARE----LGLG---DRV-TTSAAE---------------- 62 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHh----CCCC---cee-cCCHHH----------------
Confidence 4688888886 3 34444554443 479999999987776643 2321 000 011000
Q ss_pred ccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEE
Q 047371 137 SSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGI 181 (222)
Q Consensus 137 ~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 181 (222)
.....|+|+...+......+++.+...++++..++.
T Consensus 63 ---------~~~~aDvViiavp~~~~~~v~~~l~~~l~~~~iv~d 98 (307)
T PRK07502 63 ---------AVKGADLVILCVPVGASGAVAAEIAPHLKPGAIVTD 98 (307)
T ss_pred ---------HhcCCCEEEECCCHHHHHHHHHHHHhhCCCCCEEEe
Confidence 123579999877766667778888888888876554
No 378
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=84.37 E-value=13 Score=31.33 Aligned_cols=91 Identities=19% Similarity=0.226 Sum_probs=54.6
Q ss_pred hcCCCcEEEEccCC-CHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371 56 IKGGELFLDYGTGS-GILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE 134 (222)
Q Consensus 56 ~~~~~~vLD~G~G~-G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 134 (222)
++++.+||-.|+|. |..+..+++....++++++.++...+.+++ .+.. .+ +...+ ..
T Consensus 153 ~~~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~----~g~~--~~-~~~~~--~~------------- 210 (319)
T cd08242 153 ITPGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKLALARR----LGVE--TV-LPDEA--ES------------- 210 (319)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH----cCCc--EE-eCccc--cc-------------
Confidence 45788888887542 333344444433569999999888877765 2322 11 11000 00
Q ss_pred ccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEe
Q 047371 135 YLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGIS 182 (222)
Q Consensus 135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 182 (222)
..+.+|+++.... -...+..+.+.|+++|.++..
T Consensus 211 -----------~~~~~d~vid~~g---~~~~~~~~~~~l~~~g~~v~~ 244 (319)
T cd08242 211 -----------EGGGFDVVVEATG---SPSGLELALRLVRPRGTVVLK 244 (319)
T ss_pred -----------cCCCCCEEEECCC---ChHHHHHHHHHhhcCCEEEEE
Confidence 3456899986421 134567778889999998863
No 379
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=84.05 E-value=10 Score=29.99 Aligned_cols=47 Identities=19% Similarity=0.280 Sum_probs=30.1
Q ss_pred CeeEEEeccc--c--------ccHHHHHHHHHHcccCCeEEEE-ecCCCCcHHHHHHH
Q 047371 149 EYDVVIANIL--L--------NPLPQLADHIVSYAKPGAVVGI-SGILSEQLPRIINR 195 (222)
Q Consensus 149 ~~D~v~~~~~--~--------~~~~~~l~~~~~~LkpgG~l~~-~~~~~~~~~~~~~~ 195 (222)
..|+++...+ . .++...++.+.+.++++..+++ ++.+....+++...
T Consensus 76 ~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ 133 (185)
T PF03721_consen 76 DADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKP 133 (185)
T ss_dssp H-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHH
T ss_pred ccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhh
Confidence 4677776432 2 2256788999999999877777 57777766644433
No 380
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=83.98 E-value=7.5 Score=33.73 Aligned_cols=103 Identities=17% Similarity=0.254 Sum_probs=58.2
Q ss_pred hcCCCcEEEEccCC-CHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCC-cccccccccccccc
Q 047371 56 IKGGELFLDYGTGS-GILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPD-RTFTASMNERVDGV 132 (222)
Q Consensus 56 ~~~~~~vLD~G~G~-G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~ 132 (222)
++++++||-.|+|. |..+..+++. +..++++++.++..++.+++ .+.. . .+...+. ..+. .....
T Consensus 185 ~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~----~Ga~--~-~i~~~~~~~~~~----~~v~~- 252 (369)
T cd08301 185 VKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKK----FGVT--E-FVNPKDHDKPVQ----EVIAE- 252 (369)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCc--e-EEcccccchhHH----HHHHH-
Confidence 56789999988653 4444555554 54489999999988887754 2321 1 1111100 0010 00001
Q ss_pred hhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCC-eEEEEecCC
Q 047371 133 VEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPG-AVVGISGIL 185 (222)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~~ 185 (222)
. ..+.+|+++-... -...+..+.+.++++ |.+++.+..
T Consensus 253 -----------~-~~~~~d~vid~~G---~~~~~~~~~~~~~~~~g~~v~~g~~ 291 (369)
T cd08301 253 -----------M-TGGGVDYSFECTG---NIDAMISAFECVHDGWGVTVLLGVP 291 (369)
T ss_pred -----------H-hCCCCCEEEECCC---ChHHHHHHHHHhhcCCCEEEEECcC
Confidence 1 1236898885332 134666677888996 898876554
No 381
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=83.93 E-value=4.4 Score=34.62 Aligned_cols=101 Identities=12% Similarity=0.137 Sum_probs=59.9
Q ss_pred hcCCCcEEEEccC--CCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371 56 IKGGELFLDYGTG--SGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV 133 (222)
Q Consensus 56 ~~~~~~vLD~G~G--~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 133 (222)
+++|++||-.|++ .|..+..+++....++++++.++...+.+++.+ +.. .+ +...+...+. ..
T Consensus 149 ~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~l---Ga~--~v-i~~~~~~~~~----~~----- 213 (338)
T cd08295 149 PKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKL---GFD--DA-FNYKEEPDLD----AA----- 213 (338)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CCc--ee-EEcCCcccHH----HH-----
Confidence 5688999988863 356666677654467999998888777776532 322 11 1111110110 00
Q ss_pred hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEec
Q 047371 134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISG 183 (222)
Q Consensus 134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 183 (222)
+... ..+.+|+++.... ...+..+.++|+++|.++..+
T Consensus 214 -------i~~~-~~~gvd~v~d~~g----~~~~~~~~~~l~~~G~iv~~G 251 (338)
T cd08295 214 -------LKRY-FPNGIDIYFDNVG----GKMLDAVLLNMNLHGRIAACG 251 (338)
T ss_pred -------HHHh-CCCCcEEEEECCC----HHHHHHHHHHhccCcEEEEec
Confidence 0011 1246899985432 256778889999999998754
No 382
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=83.55 E-value=10 Score=32.82 Aligned_cols=97 Identities=13% Similarity=0.114 Sum_probs=54.7
Q ss_pred cCCCcEEEEccCC-CHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371 57 KGGELFLDYGTGS-GILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY 135 (222)
Q Consensus 57 ~~~~~vLD~G~G~-G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 135 (222)
+++.+++-.|+|. |..+..+++....++++++.++.....+.+. .+.. .+ +...+...+
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~---~Ga~--~~-i~~~~~~~~-------------- 238 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEH---LGAD--DY-LVSSDAAEM-------------- 238 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHh---cCCc--EE-ecCCChHHH--------------
Confidence 5788888887654 4555566665345788888877655444332 3321 11 111110000
Q ss_pred cccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecC
Q 047371 136 LSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGI 184 (222)
Q Consensus 136 ~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 184 (222)
.. ....+|+++-... ....+..+.+.++++|.++..+.
T Consensus 239 ------~~--~~~~~D~vid~~g---~~~~~~~~~~~l~~~G~iv~~G~ 276 (357)
T PLN02514 239 ------QE--AADSLDYIIDTVP---VFHPLEPYLSLLKLDGKLILMGV 276 (357)
T ss_pred ------HH--hcCCCcEEEECCC---chHHHHHHHHHhccCCEEEEECC
Confidence 00 1124888885432 13466777889999999888654
No 383
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=83.50 E-value=11 Score=28.15 Aligned_cols=84 Identities=19% Similarity=0.160 Sum_probs=49.2
Q ss_pred cEEEEccCCC---HHHHHHHHhCCCEEEEEeCC--hHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371 61 LFLDYGTGSG---ILGIAAIKFGAAMFVGVDID--PQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY 135 (222)
Q Consensus 61 ~vLD~G~G~G---~~~~~la~~~~~~v~gvD~s--~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 135 (222)
++|-.|+++| .++..+++.+..+++.+.-+ ....+.....+...+ .++.+...|..... +.........
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~---~~~~~~~~D~~~~~-~~~~~~~~~~-- 75 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPG---AKITFIECDLSDPE-SIRALIEEVI-- 75 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTT---SEEEEEESETTSHH-HHHHHHHHHH--
T ss_pred EEEEECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccc---cccccccccccccc-cccccccccc--
Confidence 4677777765 35555666667789999988 555555555555444 36777777764431 1111111110
Q ss_pred cccccccCCCCCCCeeEEEecccc
Q 047371 136 LSSHEIRGISETEEYDVVIANILL 159 (222)
Q Consensus 136 ~~~~~~~~~~~~~~~D~v~~~~~~ 159 (222)
...+++|+++.+...
T Consensus 76 ---------~~~~~ld~li~~ag~ 90 (167)
T PF00106_consen 76 ---------KRFGPLDILINNAGI 90 (167)
T ss_dssp ---------HHHSSESEEEEECSC
T ss_pred ---------ccccccccccccccc
Confidence 035679999987653
No 384
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=83.14 E-value=4.8 Score=33.49 Aligned_cols=75 Identities=25% Similarity=0.360 Sum_probs=48.1
Q ss_pred HHHHHHhC-CCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccccccccCCCCCCCee
Q 047371 73 GIAAIKFG-AAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSHEIRGISETEEYD 151 (222)
Q Consensus 73 ~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 151 (222)
+..+.+.+ ..+|+|.|.++..++.|.+. |+.. ....+.+ .-..+|
T Consensus 2 A~aL~~~g~~~~v~g~d~~~~~~~~a~~~----g~~~----~~~~~~~--------------------------~~~~~D 47 (258)
T PF02153_consen 2 ALALRKAGPDVEVYGYDRDPETLEAALEL----GIID----EASTDIE--------------------------AVEDAD 47 (258)
T ss_dssp HHHHHHTTTTSEEEEE-SSHHHHHHHHHT----TSSS----EEESHHH--------------------------HGGCCS
T ss_pred hHHHHhCCCCeEEEEEeCCHHHHHHHHHC----CCee----eccCCHh--------------------------HhcCCC
Confidence 44555554 57999999999998888643 3321 1111000 123469
Q ss_pred EEEeccccccHHHHHHHHHHcccCCeEEEE
Q 047371 152 VVIANILLNPLPQLADHIVSYAKPGAVVGI 181 (222)
Q Consensus 152 ~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 181 (222)
+|+...|.....++++++...+++|+.+.=
T Consensus 48 lvvlavP~~~~~~~l~~~~~~~~~~~iv~D 77 (258)
T PF02153_consen 48 LVVLAVPVSAIEDVLEEIAPYLKPGAIVTD 77 (258)
T ss_dssp EEEE-S-HHHHHHHHHHHHCGS-TTSEEEE
T ss_pred EEEEcCCHHHHHHHHHHhhhhcCCCcEEEE
Confidence 999988888899999999999999876654
No 385
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=83.06 E-value=4.5 Score=34.54 Aligned_cols=101 Identities=18% Similarity=0.308 Sum_probs=55.8
Q ss_pred hcCCCcEEEEccCC-CHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371 56 IKGGELFLDYGTGS-GILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV 133 (222)
Q Consensus 56 ~~~~~~vLD~G~G~-G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 133 (222)
+.++.++|-.|+|. |..+..+++. +..++++++.++.....+++ .+.. .-+..... .+. ..
T Consensus 164 ~~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~g~~-~~v~~~~~---~~~----~~----- 226 (345)
T cd08286 164 VKPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKK----LGAT-HTVNSAKG---DAI----EQ----- 226 (345)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCC-ceeccccc---cHH----HH-----
Confidence 45678877776543 3344445554 43688999988877666553 2321 01111110 000 00
Q ss_pred hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEec
Q 047371 134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISG 183 (222)
Q Consensus 134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 183 (222)
+..+.....+|+++.... -...++.+.+.|+++|.++..+
T Consensus 227 -------i~~~~~~~~~d~vld~~g---~~~~~~~~~~~l~~~g~~v~~g 266 (345)
T cd08286 227 -------VLELTDGRGVDVVIEAVG---IPATFELCQELVAPGGHIANVG 266 (345)
T ss_pred -------HHHHhCCCCCCEEEECCC---CHHHHHHHHHhccCCcEEEEec
Confidence 001113456899985432 2345788889999999988643
No 386
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=82.43 E-value=24 Score=29.51 Aligned_cols=107 Identities=16% Similarity=0.148 Sum_probs=61.7
Q ss_pred cEEEEccCC--CHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHH-------hcCC-CCC-------ceeEEecCCccccc
Q 047371 61 LFLDYGTGS--GILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAA-------LNNI-GPK-------KIKLHLVPDRTFTA 123 (222)
Q Consensus 61 ~vLD~G~G~--G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~-------~~~~-~~~-------~v~~~~~~~~~~~~ 123 (222)
+|--+|+|. +.++..++..+ .+|+++|.++..++.++.++. ..+. ... ++.+. .+
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g-~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~-~~------ 76 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAG-YDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGT-TD------ 76 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCC-CceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CC------
Confidence 466778875 34555666665 489999999999877654332 1221 000 11100 00
Q ss_pred ccccccccchhccccccccCCCCCCCeeEEEecccccc--HHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHH
Q 047371 124 SMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP--LPQLADHIVSYAKPGAVVGISGILSEQLPRIINRY 196 (222)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~ 196 (222)
+.....+|+|+...+-.. ...++..+.+.++++..+..+ ...-...++.+.+
T Consensus 77 --------------------~~~~~~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~-ts~~~~~~la~~~ 130 (282)
T PRK05808 77 --------------------LDDLKDADLVIEAATENMDLKKKIFAQLDEIAKPEAILATN-TSSLSITELAAAT 130 (282)
T ss_pred --------------------HHHhccCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEEC-CCCCCHHHHHHhh
Confidence 112345799997654332 357889999999998777443 3334444555544
No 387
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=82.28 E-value=12 Score=31.84 Aligned_cols=100 Identities=18% Similarity=0.268 Sum_probs=57.7
Q ss_pred hcCC--CcEEEEccC--CCHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccc
Q 047371 56 IKGG--ELFLDYGTG--SGILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVD 130 (222)
Q Consensus 56 ~~~~--~~vLD~G~G--~G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 130 (222)
++++ ++||-.|++ .|..+..+++. +..++++++.+++..+.+++. .|.. .+ +. .....+. ..
T Consensus 150 ~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~---lGa~--~v-i~-~~~~~~~----~~-- 216 (345)
T cd08293 150 ITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSE---LGFD--AA-IN-YKTDNVA----ER-- 216 (345)
T ss_pred CCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHh---cCCc--EE-EE-CCCCCHH----HH--
Confidence 4455 889888863 35666667765 433799999988777766553 2332 11 11 1111110 00
Q ss_pred cchhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEec
Q 047371 131 GVVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISG 183 (222)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 183 (222)
+..... +.+|+++....- ..+..+.+.|+++|.++..+
T Consensus 217 ----------i~~~~~-~gvd~vid~~g~----~~~~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 217 ----------LRELCP-EGVDVYFDNVGG----EISDTVISQMNENSHIILCG 254 (345)
T ss_pred ----------HHHHCC-CCceEEEECCCc----HHHHHHHHHhccCCEEEEEe
Confidence 011112 569999854322 23577888999999988743
No 388
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=81.86 E-value=1.5 Score=34.94 Aligned_cols=21 Identities=19% Similarity=0.229 Sum_probs=18.3
Q ss_pred HHHHHHHHHHcccCCeEEEEe
Q 047371 162 LPQLADHIVSYAKPGAVVGIS 182 (222)
Q Consensus 162 ~~~~l~~~~~~LkpgG~l~~~ 182 (222)
+...+.++.++|||+|.+++.
T Consensus 35 ~~~~~~~~~rvLk~~g~~~i~ 55 (231)
T PF01555_consen 35 MEEWLKECYRVLKPGGSIFIF 55 (231)
T ss_dssp HHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHHhhcCCCeeEEEE
Confidence 456789999999999999985
No 389
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=81.83 E-value=12 Score=34.80 Aligned_cols=95 Identities=13% Similarity=0.045 Sum_probs=51.9
Q ss_pred CcEEEEccCC-CH-HHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccc
Q 047371 60 ELFLDYGTGS-GI-LGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLS 137 (222)
Q Consensus 60 ~~vLD~G~G~-G~-~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (222)
.+++-+|||. |. ++..+.+.+ ..++.+|.+++.++.+++. + .....+|..+... ...
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g-~~vvvId~d~~~~~~~~~~----g-----~~~i~GD~~~~~~-----L~~------ 476 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAG-IPLVVIETSRTRVDELRER----G-----IRAVLGNAANEEI-----MQL------ 476 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCC-CCEEEEECCHHHHHHHHHC----C-----CeEEEcCCCCHHH-----HHh------
Confidence 4566666665 33 222333344 5799999999988888642 2 3467777654311 111
Q ss_pred cccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEe
Q 047371 138 SHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGIS 182 (222)
Q Consensus 138 ~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 182 (222)
..-+++|.+++...-+.-...+-...+...|+-.++.-
T Consensus 477 -------a~i~~a~~viv~~~~~~~~~~iv~~~~~~~~~~~iiar 514 (558)
T PRK10669 477 -------AHLDCARWLLLTIPNGYEAGEIVASAREKRPDIEIIAR 514 (558)
T ss_pred -------cCccccCEEEEEcCChHHHHHHHHHHHHHCCCCeEEEE
Confidence 14457887775433322222232334455677666653
No 390
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=81.63 E-value=15 Score=34.78 Aligned_cols=94 Identities=15% Similarity=0.128 Sum_probs=52.8
Q ss_pred CcEEEEccCC-CHHH-HHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccc
Q 047371 60 ELFLDYGTGS-GILG-IAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLS 137 (222)
Q Consensus 60 ~~vLD~G~G~-G~~~-~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (222)
.+|+-+|+|. |... ..+.+.+ ..++.+|.++..++.+++. + ...+.+|...... +..
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g-~~vvvID~d~~~v~~~~~~----g-----~~v~~GDat~~~~-----L~~------ 459 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSSG-VKMTVLDHDPDHIETLRKF----G-----MKVFYGDATRMDL-----LES------ 459 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhCC-CCEEEEECCHHHHHHHHhc----C-----CeEEEEeCCCHHH-----HHh------
Confidence 5677777776 4433 2333333 5799999999998888652 3 3467777755421 110
Q ss_pred cccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEE
Q 047371 138 SHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGI 181 (222)
Q Consensus 138 ~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 181 (222)
..-+++|.+++...-+.....+-...+.+.|+-.++.
T Consensus 460 -------agi~~A~~vvv~~~d~~~n~~i~~~ar~~~p~~~iia 496 (621)
T PRK03562 460 -------AGAAKAEVLINAIDDPQTSLQLVELVKEHFPHLQIIA 496 (621)
T ss_pred -------cCCCcCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEE
Confidence 1345678887643322222233334444556655554
No 391
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=81.57 E-value=6.7 Score=35.33 Aligned_cols=89 Identities=17% Similarity=0.234 Sum_probs=54.3
Q ss_pred CCCcEEEEccCC-CHHHHHHH-HhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371 58 GGELFLDYGTGS-GILGIAAI-KFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY 135 (222)
Q Consensus 58 ~~~~vLD~G~G~-G~~~~~la-~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 135 (222)
.|++|+-+|+|. |......+ ..+ .+|+.+|.++.....+.. .+.. . .+...
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~G-a~ViV~d~dp~ra~~A~~----~G~~-----v--~~l~e--------------- 263 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLG-ARVIVTEVDPICALQAAM----DGFR-----V--MTMEE--------------- 263 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC-CEEEEEcCCchhhHHHHh----cCCE-----e--cCHHH---------------
Confidence 689999999987 43333333 345 589999999866544432 1221 1 11111
Q ss_pred cccccccCCCCCCCeeEEEeccccccHHHHHH-HHHHcccCCeEEEEecCCC
Q 047371 136 LSSHEIRGISETEEYDVVIANILLNPLPQLAD-HIVSYAKPGAVVGISGILS 186 (222)
Q Consensus 136 ~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~-~~~~~LkpgG~l~~~~~~~ 186 (222)
....+|+++.... ...++. .....+|+|++++..+...
T Consensus 264 ----------al~~aDVVI~aTG---~~~vI~~~~~~~mK~GailiNvG~~d 302 (425)
T PRK05476 264 ----------AAELGDIFVTATG---NKDVITAEHMEAMKDGAILANIGHFD 302 (425)
T ss_pred ----------HHhCCCEEEECCC---CHHHHHHHHHhcCCCCCEEEEcCCCC
Confidence 1225799986432 234554 6788899999998876544
No 392
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=81.51 E-value=4.7 Score=34.04 Aligned_cols=99 Identities=14% Similarity=0.185 Sum_probs=58.9
Q ss_pred hcCCCcEEEEccC--CCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371 56 IKGGELFLDYGTG--SGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV 133 (222)
Q Consensus 56 ~~~~~~vLD~G~G--~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 133 (222)
+++|.+||-.|++ .|..+..+++....++++++.++...+.+++ .+.. .+ +. .....+. ..
T Consensus 141 ~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~----~Ga~--~v-i~-~~~~~~~----~~----- 203 (329)
T cd08294 141 PKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKE----LGFD--AV-FN-YKTVSLE----EA----- 203 (329)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCC--EE-Ee-CCCccHH----HH-----
Confidence 5678899888743 3566666776544679999988887777755 2332 11 11 1111110 00
Q ss_pred hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEec
Q 047371 134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISG 183 (222)
Q Consensus 134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 183 (222)
+... ..+.+|+++.... ...+....+.|+++|.++..+
T Consensus 204 -------v~~~-~~~gvd~vld~~g----~~~~~~~~~~l~~~G~iv~~g 241 (329)
T cd08294 204 -------LKEA-APDGIDCYFDNVG----GEFSSTVLSHMNDFGRVAVCG 241 (329)
T ss_pred -------HHHH-CCCCcEEEEECCC----HHHHHHHHHhhccCCEEEEEc
Confidence 0011 1246899985322 255678889999999988643
No 393
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=81.39 E-value=8.3 Score=34.52 Aligned_cols=100 Identities=15% Similarity=0.099 Sum_probs=58.8
Q ss_pred cCCCcEEEEccCC-CHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371 57 KGGELFLDYGTGS-GILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY 135 (222)
Q Consensus 57 ~~~~~vLD~G~G~-G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 135 (222)
..|++|+-+|+|. |......++.-..+|+++|.++.....|.. .+.. . .+.+.
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~----~G~~-----v--~~lee--------------- 246 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAM----DGFR-----V--MTMEE--------------- 246 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHh----cCCE-----e--CCHHH---------------
Confidence 4699999999998 544444444323689999999865433332 2321 1 11111
Q ss_pred cccccccCCCCCCCeeEEEeccccccHHHHHH-HHHHcccCCeEEEEecCCCC--cHHHHHHH
Q 047371 136 LSSHEIRGISETEEYDVVIANILLNPLPQLAD-HIVSYAKPGAVVGISGILSE--QLPRIINR 195 (222)
Q Consensus 136 ~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~-~~~~~LkpgG~l~~~~~~~~--~~~~~~~~ 195 (222)
.....|+++.... ...++. .....+|+|++++..+.... +...+.+.
T Consensus 247 ----------al~~aDVVItaTG---~~~vI~~~~~~~mK~GailiN~G~~~~eId~~aL~~~ 296 (406)
T TIGR00936 247 ----------AAKIGDIFITATG---NKDVIRGEHFENMKDGAIVANIGHFDVEIDVKALEEL 296 (406)
T ss_pred ----------HHhcCCEEEECCC---CHHHHHHHHHhcCCCCcEEEEECCCCceeCHHHHHHH
Confidence 1124699887432 244454 47788999999998765432 33444443
No 394
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=81.37 E-value=6 Score=33.85 Aligned_cols=104 Identities=26% Similarity=0.338 Sum_probs=57.1
Q ss_pred hcCCCcEEEEccCC-CHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371 56 IKGGELFLDYGTGS-GILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV 133 (222)
Q Consensus 56 ~~~~~~vLD~G~G~-G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 133 (222)
++++.+||-.|+|. |..+..+++. +...+++++-++...+.+++. +.. . +...+...+. .....
T Consensus 160 ~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~----g~~--~--vi~~~~~~~~----~~~~~-- 225 (343)
T cd05285 160 VRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKEL----GAT--H--TVNVRTEDTP----ESAEK-- 225 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----CCc--E--Eeccccccch----hHHHH--
Confidence 56788888877654 4455556655 433489998888777666442 321 1 1111110000 00000
Q ss_pred hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEec
Q 047371 134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISG 183 (222)
Q Consensus 134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 183 (222)
+..+.....+|+++..... ...++.+.+.++++|.++..+
T Consensus 226 -------~~~~~~~~~~d~vld~~g~---~~~~~~~~~~l~~~G~~v~~g 265 (343)
T cd05285 226 -------IAELLGGKGPDVVIECTGA---ESCIQTAIYATRPGGTVVLVG 265 (343)
T ss_pred -------HHHHhCCCCCCEEEECCCC---HHHHHHHHHHhhcCCEEEEEc
Confidence 0011134569999964322 236778888999999988643
No 395
>PRK07904 short chain dehydrogenase; Provisional
Probab=81.14 E-value=9.9 Score=31.15 Aligned_cols=62 Identities=13% Similarity=0.014 Sum_probs=37.4
Q ss_pred cCCCcEEEEccCCCH---HHHHHHHhCCCEEEEEeCChHH-HHHHHHHHHhcCCCCCceeEEecCCcc
Q 047371 57 KGGELFLDYGTGSGI---LGIAAIKFGAAMFVGVDIDPQV-IKSAHQNAALNNIGPKKIKLHLVPDRT 120 (222)
Q Consensus 57 ~~~~~vLD~G~G~G~---~~~~la~~~~~~v~gvD~s~~~-l~~a~~~~~~~~~~~~~v~~~~~~~~~ 120 (222)
..++++|-.|++.|. ++..+++.+..+|+.++.++.. ++.+.+.+...+. .++.+...|...
T Consensus 6 ~~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~--~~v~~~~~D~~~ 71 (253)
T PRK07904 6 GNPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGA--SSVEVIDFDALD 71 (253)
T ss_pred CCCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCC--CceEEEEecCCC
Confidence 456788888886552 3333444444689999988764 6655554444332 256666666644
No 396
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=80.73 E-value=24 Score=29.75 Aligned_cols=91 Identities=18% Similarity=0.167 Sum_probs=54.7
Q ss_pred hcCCCcEEEEccCC-CHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371 56 IKGGELFLDYGTGS-GILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE 134 (222)
Q Consensus 56 ~~~~~~vLD~G~G~-G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 134 (222)
++++.++|-.|+|. |..+..+++....++++++-++...+.+++ .+.. ..+ ... ..
T Consensus 165 ~~~~~~vlV~g~g~vg~~~~~la~~~g~~v~~~~~~~~~~~~~~~----~g~~---~~~-~~~--~~------------- 221 (329)
T cd08298 165 LKPGQRLGLYGFGASAHLALQIARYQGAEVFAFTRSGEHQELARE----LGAD---WAG-DSD--DL------------- 221 (329)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHH----hCCc---EEe-ccC--cc-------------
Confidence 45677888777653 334444555544789999888876666643 2321 001 000 00
Q ss_pred ccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEec
Q 047371 135 YLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISG 183 (222)
Q Consensus 135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 183 (222)
..+.+|+++.... ....++.+.+.++++|.++..+
T Consensus 222 -----------~~~~vD~vi~~~~---~~~~~~~~~~~l~~~G~~v~~g 256 (329)
T cd08298 222 -----------PPEPLDAAIIFAP---VGALVPAALRAVKKGGRVVLAG 256 (329)
T ss_pred -----------CCCcccEEEEcCC---cHHHHHHHHHHhhcCCEEEEEc
Confidence 2235788875322 2356888899999999988754
No 397
>PLN02494 adenosylhomocysteinase
Probab=80.73 E-value=6.1 Score=36.03 Aligned_cols=89 Identities=20% Similarity=0.172 Sum_probs=53.8
Q ss_pred cCCCcEEEEccCC-CHHHHHHH-HhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371 57 KGGELFLDYGTGS-GILGIAAI-KFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE 134 (222)
Q Consensus 57 ~~~~~vLD~G~G~-G~~~~~la-~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 134 (222)
-.|++|+-+|+|. |......+ ..+ .+|+++|.++.....|.. .+.. .. +.+.
T Consensus 252 LaGKtVvViGyG~IGr~vA~~aka~G-a~VIV~e~dp~r~~eA~~----~G~~-----vv--~leE-------------- 305 (477)
T PLN02494 252 IAGKVAVICGYGDVGKGCAAAMKAAG-ARVIVTEIDPICALQALM----EGYQ-----VL--TLED-------------- 305 (477)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCCchhhHHHHh----cCCe-----ec--cHHH--------------
Confidence 3589999999997 43333333 345 589999999865444432 2221 11 1111
Q ss_pred ccccccccCCCCCCCeeEEEeccccccHHHH-HHHHHHcccCCeEEEEecCC
Q 047371 135 YLSSHEIRGISETEEYDVVIANILLNPLPQL-ADHIVSYAKPGAVVGISGIL 185 (222)
Q Consensus 135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~-l~~~~~~LkpgG~l~~~~~~ 185 (222)
.....|+++..... ..+ .......+|+|++++..+..
T Consensus 306 -----------al~~ADVVI~tTGt---~~vI~~e~L~~MK~GAiLiNvGr~ 343 (477)
T PLN02494 306 -----------VVSEADIFVTTTGN---KDIIMVDHMRKMKNNAIVCNIGHF 343 (477)
T ss_pred -----------HHhhCCEEEECCCC---ccchHHHHHhcCCCCCEEEEcCCC
Confidence 11247999874432 233 36777899999999987653
No 398
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=80.71 E-value=7.6 Score=33.47 Aligned_cols=103 Identities=21% Similarity=0.278 Sum_probs=55.7
Q ss_pred cCCCcEEEEccCC-CHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371 57 KGGELFLDYGTGS-GILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE 134 (222)
Q Consensus 57 ~~~~~vLD~G~G~-G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 134 (222)
.++.+||-.|+|. |..+..+++. +..++++++.++...+.+++ .+.. . +......... ....
T Consensus 176 ~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~--~--vi~~~~~~~~----~~~~---- 239 (361)
T cd08231 176 GAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELARE----FGAD--A--TIDIDELPDP----QRRA---- 239 (361)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCC--e--EEcCcccccH----HHHH----
Confidence 4688888887643 3444445554 44489999988877666543 2332 1 1111100000 0000
Q ss_pred ccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEec
Q 047371 135 YLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISG 183 (222)
Q Consensus 135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 183 (222)
.+......+.+|+++..... ...+....+.++++|.++..+
T Consensus 240 -----~i~~~~~~~~~d~vid~~g~---~~~~~~~~~~l~~~G~~v~~g 280 (361)
T cd08231 240 -----IVRDITGGRGADVVIEASGH---PAAVPEGLELLRRGGTYVLVG 280 (361)
T ss_pred -----HHHHHhCCCCCcEEEECCCC---hHHHHHHHHHhccCCEEEEEc
Confidence 00111134568999854321 345677888999999998754
No 399
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=80.57 E-value=6.5 Score=33.49 Aligned_cols=100 Identities=27% Similarity=0.429 Sum_probs=55.9
Q ss_pred hcCCCcEEEEccCC-CHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371 56 IKGGELFLDYGTGS-GILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV 133 (222)
Q Consensus 56 ~~~~~~vLD~G~G~-G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 133 (222)
..++.+||-.|+|. |..+..+++. +...+++++-++...+.++. .+.. . +........ ..
T Consensus 157 ~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~----~g~~--~--~~~~~~~~~-----~~----- 218 (343)
T cd08236 157 ITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARE----LGAD--D--TINPKEEDV-----EK----- 218 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCCC--E--EecCccccH-----HH-----
Confidence 55788898887644 4455555554 43349999888876665532 2321 1 111110000 00
Q ss_pred hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEec
Q 047371 134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISG 183 (222)
Q Consensus 134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 183 (222)
+........+|+++.... -...+..+.+.|+++|.++..+
T Consensus 219 -------~~~~~~~~~~d~vld~~g---~~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 219 -------VRELTEGRGADLVIEAAG---SPATIEQALALARPGGKVVLVG 258 (343)
T ss_pred -------HHHHhCCCCCCEEEECCC---CHHHHHHHHHHhhcCCEEEEEc
Confidence 001113345999986421 1346677888999999988754
No 400
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=80.55 E-value=21 Score=31.54 Aligned_cols=61 Identities=15% Similarity=0.201 Sum_probs=40.9
Q ss_pred CCcchhHHHHHHHHhhhcCCCcEEEEccCCCH----HHHHHHHh----CCCEEEEEeC----ChHHHHHHHHHHH
Q 047371 40 GEHATTKLCLLLLQSLIKGGELFLDYGTGSGI----LGIAAIKF----GAAMFVGVDI----DPQVIKSAHQNAA 102 (222)
Q Consensus 40 ~~~~~~~~~~~~l~~~~~~~~~vLD~G~G~G~----~~~~la~~----~~~~v~gvD~----s~~~l~~a~~~~~ 102 (222)
++.-..+.+++.+... +.-+|+|+|.|.|. +...++.. +.-+|+|++. +...++.+.+++.
T Consensus 94 a~~taNqaIleA~~g~--~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~ 166 (374)
T PF03514_consen 94 AHFTANQAILEAFEGE--RRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLA 166 (374)
T ss_pred hhhchhHHHHHHhccC--cceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHH
Confidence 3455666666666433 34589999999993 33445543 2347999999 7778887776654
No 401
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=80.45 E-value=6.5 Score=34.14 Aligned_cols=101 Identities=18% Similarity=0.326 Sum_probs=58.0
Q ss_pred hcCCCcEEEEccCC-CHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371 56 IKGGELFLDYGTGS-GILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV 133 (222)
Q Consensus 56 ~~~~~~vLD~G~G~-G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 133 (222)
++++.+||-.|+|. |..+..+++. +...++++|.++...+.+++ .+.. . +.......+. ..+
T Consensus 184 ~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~----~g~~--~--~i~~~~~~~~-------~~v- 247 (365)
T cd08278 184 PRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKE----LGAT--H--VINPKEEDLV-------AAI- 247 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCc--E--EecCCCcCHH-------HHH-
Confidence 45788888887654 4555555654 55579999999887776654 2221 1 1111111110 000
Q ss_pred hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecC
Q 047371 134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGI 184 (222)
Q Consensus 134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 184 (222)
.... ...+|+++..... ...+..+.+.++++|.++..+.
T Consensus 248 --------~~~~-~~~~d~vld~~g~---~~~~~~~~~~l~~~G~~v~~g~ 286 (365)
T cd08278 248 --------REIT-GGGVDYALDTTGV---PAVIEQAVDALAPRGTLALVGA 286 (365)
T ss_pred --------HHHh-CCCCcEEEECCCC---cHHHHHHHHHhccCCEEEEeCc
Confidence 0111 3458999864322 2457778888999999887543
No 402
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=80.33 E-value=12 Score=31.53 Aligned_cols=120 Identities=12% Similarity=0.154 Sum_probs=62.6
Q ss_pred CcEEEEccCC-C-HHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhc--CCC----CCceeEEecCCccccccccccccc
Q 047371 60 ELFLDYGTGS-G-ILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALN--NIG----PKKIKLHLVPDRTFTASMNERVDG 131 (222)
Q Consensus 60 ~~vLD~G~G~-G-~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~--~~~----~~~v~~~~~~~~~~~~~~~~~~~~ 131 (222)
.+|.-+|+|. | .++..++..+ .+|+.+|.++..++.+++.+... ++. ...+. ........ .
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G-~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~--~~~~~~~~--------~ 72 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTG-YDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMS--EDEAKAIM--------A 72 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCC--HHHHHHHH--------h
Confidence 3577788886 3 3555666665 48999999999998876654321 110 00000 00000000 0
Q ss_pred chhccccccccCCCCCCCeeEEEecccccc--HHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHH
Q 047371 132 VVEYLSSHEIRGISETEEYDVVIANILLNP--LPQLADHIVSYAKPGAVVGISGILSEQLPRIINRY 196 (222)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~ 196 (222)
.+.. . .++......|+|+...+-.. ...+++++.+.++++..+. +....-...++.+.+
T Consensus 73 ~i~~--~---~~~~~~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~-S~tsg~~~~~la~~~ 133 (291)
T PRK06035 73 RIRT--S---TSYESLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIA-SNTSGIMIAEIATAL 133 (291)
T ss_pred CcEe--e---CCHHHhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEE-EcCCCCCHHHHHhhc
Confidence 0000 0 00001245799997665443 4567888888888887654 333334445555544
No 403
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=80.23 E-value=4.8 Score=34.48 Aligned_cols=44 Identities=20% Similarity=0.154 Sum_probs=35.8
Q ss_pred CCCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHH
Q 047371 58 GGELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAA 102 (222)
Q Consensus 58 ~~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~ 102 (222)
.|.+|+-+|.|...+...+++.+ .+|.++|+++..+..-+..+.
T Consensus 63 ~ghrivtigSGGcn~L~ylsr~P-a~id~VDlN~ahiAln~lkla 106 (414)
T COG5379 63 IGHRIVTIGSGGCNMLAYLSRAP-ARIDVVDLNPAHIALNRLKLA 106 (414)
T ss_pred CCcEEEEecCCcchHHHHhhcCC-ceeEEEeCCHHHHHHHHHHHH
Confidence 57889999999888888887776 789999999998877655443
No 404
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=80.17 E-value=4.5 Score=33.92 Aligned_cols=39 Identities=21% Similarity=0.337 Sum_probs=30.8
Q ss_pred hcCCCcEEEEccCCCHHHHHHHHh------CCCEEEEEeCChHHH
Q 047371 56 IKGGELFLDYGTGSGILGIAAIKF------GAAMFVGVDIDPQVI 94 (222)
Q Consensus 56 ~~~~~~vLD~G~G~G~~~~~la~~------~~~~v~gvD~s~~~l 94 (222)
+.+...++|+|||.|.++..++.. +...++.+|-.....
T Consensus 16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~ 60 (259)
T PF05206_consen 16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH 60 (259)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc
Confidence 566779999999999999988763 346799999866443
No 405
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=79.90 E-value=12 Score=31.45 Aligned_cols=84 Identities=19% Similarity=0.219 Sum_probs=52.5
Q ss_pred cEEEEccCC--CHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcccc
Q 047371 61 LFLDYGTGS--GILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSS 138 (222)
Q Consensus 61 ~vLD~G~G~--G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (222)
+|.=+|+|. |.++..+.+.+ .+|+++|.++..++.+... +.. .....+.+
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g-~~V~~~d~~~~~~~~a~~~----g~~----~~~~~~~~------------------- 53 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLG-HTVYGVSRRESTCERAIER----GLV----DEASTDLS------------------- 53 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHC----CCc----ccccCCHh-------------------
Confidence 356677775 34555555555 4899999999887776542 211 00000000
Q ss_pred ccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEE
Q 047371 139 HEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVV 179 (222)
Q Consensus 139 ~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l 179 (222)
.....|+|+...+.....++++.+...++++..+
T Consensus 54 -------~~~~aDlVilavp~~~~~~~~~~l~~~l~~~~ii 87 (279)
T PRK07417 54 -------LLKDCDLVILALPIGLLLPPSEQLIPALPPEAIV 87 (279)
T ss_pred -------HhcCCCEEEEcCCHHHHHHHHHHHHHhCCCCcEE
Confidence 1235799998877776777888888888877444
No 406
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=79.85 E-value=8.8 Score=33.19 Aligned_cols=93 Identities=15% Similarity=0.160 Sum_probs=59.6
Q ss_pred cEEEEccCC-CHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccccc
Q 047371 61 LFLDYGTGS-GILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSH 139 (222)
Q Consensus 61 ~vLD~G~G~-G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (222)
+|.-+|.|. |..+..++---.+.|+-.|+|...+.+...... .++.........+..
T Consensus 170 kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~------~rv~~~~st~~~iee---------------- 227 (371)
T COG0686 170 KVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFG------GRVHTLYSTPSNIEE---------------- 227 (371)
T ss_pred cEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhC------ceeEEEEcCHHHHHH----------------
Confidence 567777776 666665554435789999999988877766432 244444433322211
Q ss_pred cccCCCCCCCeeEEEecccccc---HHHHHHHHHHcccCCeEEEE
Q 047371 140 EIRGISETEEYDVVIANILLNP---LPQLADHIVSYAKPGAVVGI 181 (222)
Q Consensus 140 ~~~~~~~~~~~D~v~~~~~~~~---~~~~l~~~~~~LkpgG~l~~ 181 (222)
.-.+.|+++..-.+.. ..-..+++.+.+|||++++=
T Consensus 228 ------~v~~aDlvIgaVLIpgakaPkLvt~e~vk~MkpGsVivD 266 (371)
T COG0686 228 ------AVKKADLVIGAVLIPGAKAPKLVTREMVKQMKPGSVIVD 266 (371)
T ss_pred ------HhhhccEEEEEEEecCCCCceehhHHHHHhcCCCcEEEE
Confidence 3456899987544332 33357888899999998773
No 407
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=79.76 E-value=14 Score=32.34 Aligned_cols=97 Identities=11% Similarity=0.070 Sum_probs=54.6
Q ss_pred cCCCcEEEEccCC-CHHHHHHHHhCCCEEEEEeCChHH-HHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371 57 KGGELFLDYGTGS-GILGIAAIKFGAAMFVGVDIDPQV-IKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE 134 (222)
Q Consensus 57 ~~~~~vLD~G~G~-G~~~~~la~~~~~~v~gvD~s~~~-l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 134 (222)
+++++|+-.|+|. |..+..+++.-..++++++.+++. .+.++ ..+.. .+ +...+.... ..
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~----~lGa~--~~-i~~~~~~~v--------~~--- 238 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAID----RLGAD--SF-LVTTDSQKM--------KE--- 238 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHH----hCCCc--EE-EcCcCHHHH--------HH---
Confidence 4788898888764 555566666533578999887644 33332 23332 11 111100000 00
Q ss_pred ccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCC
Q 047371 135 YLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGIL 185 (222)
Q Consensus 135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 185 (222)
..+.+|+++-... -...+..+.+.++++|.++..+..
T Consensus 239 -----------~~~~~D~vid~~G---~~~~~~~~~~~l~~~G~iv~vG~~ 275 (375)
T PLN02178 239 -----------AVGTMDFIIDTVS---AEHALLPLFSLLKVSGKLVALGLP 275 (375)
T ss_pred -----------hhCCCcEEEECCC---cHHHHHHHHHhhcCCCEEEEEccC
Confidence 1124898885332 234567788899999999876543
No 408
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=79.70 E-value=13 Score=31.36 Aligned_cols=96 Identities=15% Similarity=0.167 Sum_probs=56.2
Q ss_pred hcCCCcEEEEccCC-CHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371 56 IKGGELFLDYGTGS-GILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE 134 (222)
Q Consensus 56 ~~~~~~vLD~G~G~-G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 134 (222)
+.++.+||-.|+|. |..+..+++....++++++.++...+.+++. +.. .+ + ........
T Consensus 160 ~~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~----g~~--~~-~-~~~~~~~~------------ 219 (330)
T cd08245 160 PRPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKL----GAD--EV-V-DSGAELDE------------ 219 (330)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh----CCc--EE-e-ccCCcchH------------
Confidence 45678898888763 5555555555345799999998887776431 221 11 1 11000000
Q ss_pred ccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEec
Q 047371 135 YLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISG 183 (222)
Q Consensus 135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 183 (222)
.. ..+.+|+++.... ....+..+.+.|+++|.++..+
T Consensus 220 -------~~--~~~~~d~vi~~~~---~~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 220 -------QA--AAGGADVILVTVV---SGAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred -------Hh--ccCCCCEEEECCC---cHHHHHHHHHhcccCCEEEEEC
Confidence 00 1235898885321 1346677888999999988753
No 409
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=79.69 E-value=5.4 Score=34.92 Aligned_cols=103 Identities=16% Similarity=0.203 Sum_probs=56.6
Q ss_pred hcCCCcEEEEccCC-CHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCC--ccccccccccccc
Q 047371 56 IKGGELFLDYGTGS-GILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPD--RTFTASMNERVDG 131 (222)
Q Consensus 56 ~~~~~~vLD~G~G~-G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~ 131 (222)
++++.+||-.|+|. |..++.+++. +..++++++.++...+.+++ .+.. .+ +...+. ..+. ..
T Consensus 201 ~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~~----~g~~--~~-v~~~~~~~~~~~----~~--- 266 (384)
T cd08265 201 FRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAKE----MGAD--YV-FNPTKMRDCLSG----EK--- 266 (384)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCCC--EE-EcccccccccHH----HH---
Confidence 55788888877643 3344445554 54479999988876555554 2332 11 111100 0000 00
Q ss_pred chhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEec
Q 047371 132 VVEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISG 183 (222)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 183 (222)
+..+.....+|+++.... .....+..+.+.|+++|.++..+
T Consensus 267 ---------v~~~~~g~gvDvvld~~g--~~~~~~~~~~~~l~~~G~~v~~g 307 (384)
T cd08265 267 ---------VMEVTKGWGADIQVEAAG--APPATIPQMEKSIAINGKIVYIG 307 (384)
T ss_pred ---------HHHhcCCCCCCEEEECCC--CcHHHHHHHHHHHHcCCEEEEEC
Confidence 111123456899986422 22346777888899999988753
No 410
>PF07669 Eco57I: Eco57I restriction-modification methylase; InterPro: IPR011639 This entry contains restriction modification methylases, which in the case of endonuclease Eco57I is found adjacent to the DNA cleavage domain, which recognises asymmetric DNA sequence 5'-CTGAAG [, ]. The methylase causes specific methylation on A-5 on one strand, the other strand being methylated by the Eco57IB methylase []. ; GO: 0003677 DNA binding, 0003824 catalytic activity, 0006304 DNA modification
Probab=79.67 E-value=5.8 Score=28.25 Aligned_cols=49 Identities=12% Similarity=0.109 Sum_probs=32.9
Q ss_pred CeeEEEecccccc-----------------HHHHHHHHHHcccCCeEEEEe---cCC--CCcHHHHHHHHHhh
Q 047371 149 EYDVVIANILLNP-----------------LPQLADHIVSYAKPGAVVGIS---GIL--SEQLPRIINRYSEF 199 (222)
Q Consensus 149 ~~D~v~~~~~~~~-----------------~~~~l~~~~~~LkpgG~l~~~---~~~--~~~~~~~~~~~~~~ 199 (222)
+||+|+.|||+.. +.-+++...++| +|++.+- .+. ......+++.+...
T Consensus 2 kFD~VIGNPPY~~~~~~~~~~~~~~~~~dlY~~Fie~~~~ll--~G~~~~I~P~~~l~~~~~~~~lR~~l~~~ 72 (106)
T PF07669_consen 2 KFDVVIGNPPYIKIKSLSKKKKKKKKKSDLYILFIEKSLNLL--NGYLSFITPNSFLKSGKYGKKLRKFLLNN 72 (106)
T ss_pred CcCEEEECCCChhhccccchhhcccccCcHHHHHHHHHHHHh--CCeEEEEeChHHhCcCchHHHHHHHHhcC
Confidence 5899999999743 223677788878 8887542 233 55566677776554
No 411
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=79.22 E-value=7.1 Score=29.25 Aligned_cols=41 Identities=22% Similarity=0.251 Sum_probs=26.4
Q ss_pred EEccCCC--HHHHHHH--H-hCCCEEEEEeCChHHHHHHHHH--HHhc
Q 047371 64 DYGTGSG--ILGIAAI--K-FGAAMFVGVDIDPQVIKSAHQN--AALN 104 (222)
Q Consensus 64 D~G~G~G--~~~~~la--~-~~~~~v~gvD~s~~~l~~a~~~--~~~~ 104 (222)
|+|+..| .....+. . .+..+++++|.+|..++..+++ +..+
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~ 48 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALN 48 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHT
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhc
Confidence 8999999 5555443 2 2467899999999999999888 5544
No 412
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=78.57 E-value=30 Score=31.01 Aligned_cols=122 Identities=21% Similarity=0.205 Sum_probs=64.6
Q ss_pred CcEEEEccCC-CH-HHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccc
Q 047371 60 ELFLDYGTGS-GI-LGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLS 137 (222)
Q Consensus 60 ~~vLD~G~G~-G~-~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (222)
.+|--+|-|- |. ++..+++.| -.|+|+|+++..++..... .......+.+.. +...++ .+
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G-~~ViG~DIn~~~Vd~ln~G---------~~~i~e~~~~~~-------v~~~v~-~g 71 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAG-FKVIGVDINQKKVDKLNRG---------ESYIEEPDLDEV-------VKEAVE-SG 71 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcC-CceEeEeCCHHHHHHHhCC---------cceeecCcHHHH-------HHHHHh-cC
Confidence 4566666664 43 333444555 5799999999888776432 111111111100 000000 00
Q ss_pred ccccc-CCCCCCCeeEEEeccc--c--------ccHHHHHHHHHHcccCCeEEEE-ecCCCCcHHHHHHHHHhh
Q 047371 138 SHEIR-GISETEEYDVVIANIL--L--------NPLPQLADHIVSYAKPGAVVGI-SGILSEQLPRIINRYSEF 199 (222)
Q Consensus 138 ~~~~~-~~~~~~~~D~v~~~~~--~--------~~~~~~l~~~~~~LkpgG~l~~-~~~~~~~~~~~~~~~~~~ 199 (222)
..... +-......|+++..-| + ....+..+.+...|++|-.+++ ++.+....+++..-+.+.
T Consensus 72 ~lraTtd~~~l~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~ 145 (436)
T COG0677 72 KLRATTDPEELKECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEE 145 (436)
T ss_pred CceEecChhhcccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhh
Confidence 00000 0012336787776332 2 2255678999999999999888 566666666666655543
No 413
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=78.53 E-value=8.8 Score=32.86 Aligned_cols=99 Identities=21% Similarity=0.243 Sum_probs=55.3
Q ss_pred cCCCcEEEEccCC-CHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371 57 KGGELFLDYGTGS-GILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE 134 (222)
Q Consensus 57 ~~~~~vLD~G~G~-G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 134 (222)
+++.+||-.|+|. |..+..+++. +..++++++.++...+.+++. +.. .+.......+. .....
T Consensus 174 ~~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~----g~~----~~~~~~~~~~~----~~~~~--- 238 (350)
T cd08240 174 VADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKAA----GAD----VVVNGSDPDAA----KRIIK--- 238 (350)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHh----CCc----EEecCCCccHH----HHHHH---
Confidence 3678888887543 3444445554 555899999888877776432 321 11111110000 00000
Q ss_pred ccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEec
Q 047371 135 YLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISG 183 (222)
Q Consensus 135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 183 (222)
..+. .+|+++..... ...+..+.+.|+++|.++..+
T Consensus 239 ---------~~~~-~~d~vid~~g~---~~~~~~~~~~l~~~g~~v~~g 274 (350)
T cd08240 239 ---------AAGG-GVDAVIDFVNN---SATASLAFDILAKGGKLVLVG 274 (350)
T ss_pred ---------HhCC-CCcEEEECCCC---HHHHHHHHHHhhcCCeEEEEC
Confidence 1122 68999864321 346788888999999988643
No 414
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=78.45 E-value=11 Score=32.15 Aligned_cols=100 Identities=23% Similarity=0.340 Sum_probs=55.2
Q ss_pred hcCCCcEEEEccCC-CHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371 56 IKGGELFLDYGTGS-GILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV 133 (222)
Q Consensus 56 ~~~~~~vLD~G~G~-G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 133 (222)
.+++.+||-.|+|. |..+..+++. +..++++++-++...+.+++. +.. . +.......+.
T Consensus 161 ~~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~----g~~--~--~~~~~~~~~~----------- 221 (341)
T cd05281 161 DVSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKM----GAD--V--VINPREEDVV----------- 221 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----Ccc--e--eeCcccccHH-----------
Confidence 35678888876543 4455555654 433788887777666655532 221 1 1101111110
Q ss_pred hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEec
Q 047371 134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISG 183 (222)
Q Consensus 134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 183 (222)
.+..+...+.+|+++....- ......+.+.|+++|.++..+
T Consensus 222 ------~~~~~~~~~~vd~vld~~g~---~~~~~~~~~~l~~~G~~v~~g 262 (341)
T cd05281 222 ------EVKSVTDGTGVDVVLEMSGN---PKAIEQGLKALTPGGRVSILG 262 (341)
T ss_pred ------HHHHHcCCCCCCEEEECCCC---HHHHHHHHHHhccCCEEEEEc
Confidence 00111144568999964421 345667788899999988754
No 415
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=78.17 E-value=15 Score=30.98 Aligned_cols=41 Identities=15% Similarity=0.110 Sum_probs=29.8
Q ss_pred CcEEEEccCCC--HHHHHHHHhCCCEEEEEeCChHHHHHHHHHH
Q 047371 60 ELFLDYGTGSG--ILGIAAIKFGAAMFVGVDIDPQVIKSAHQNA 101 (222)
Q Consensus 60 ~~vLD~G~G~G--~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~ 101 (222)
.+|.-+|+|.- .++..++..+ .+|+.+|.++..++.+++.+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G-~~V~l~d~~~~~l~~~~~~~ 46 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHG-FDVTIYDISDEALEKAKERI 46 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcC-CeEEEEeCCHHHHHHHHHHH
Confidence 35777888863 3455555555 57999999999998887654
No 416
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=77.61 E-value=17 Score=29.30 Aligned_cols=103 Identities=14% Similarity=0.175 Sum_probs=63.0
Q ss_pred CCCcEEEEccCCCHHHHHHHH----hC-CCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccc
Q 047371 58 GGELFLDYGTGSGILGIAAIK----FG-AAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGV 132 (222)
Q Consensus 58 ~~~~vLD~G~G~G~~~~~la~----~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 132 (222)
++..|+++|.-.|..++..|. .| ...|+++|++-..++.+... . .++.+..++...... .+....+
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-----~--p~i~f~egss~dpai--~eqi~~~ 139 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-----V--PDILFIEGSSTDPAI--AEQIRRL 139 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-----C--CCeEEEeCCCCCHHH--HHHHHHH
Confidence 578899999999987777664 23 35799999988776555432 1 378888887755421 0111111
Q ss_pred hhccccccccCCCCCCCeeEEEecccccc---HHHHHHHHHHcccCCeEEEEe
Q 047371 133 VEYLSSHEIRGISETEEYDVVIANILLNP---LPQLADHIVSYAKPGAVVGIS 182 (222)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~D~v~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~ 182 (222)
..+.--+.++-..-|+ .-.-++.+..+|.-|-++++.
T Consensus 140 -------------~~~y~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVe 179 (237)
T COG3510 140 -------------KNEYPKIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVE 179 (237)
T ss_pred -------------hcCCCcEEEEecCCchHHHHHHHHHHhhhHhhcCceEEEe
Confidence 1221122233222232 334577888999999999883
No 417
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=77.28 E-value=32 Score=30.55 Aligned_cols=50 Identities=20% Similarity=0.256 Sum_probs=32.8
Q ss_pred CCeeEEEeccccc-----------cHHHHHHHHHHcccCCeEEEE-ecCCCCcHHHHHHHHHh
Q 047371 148 EEYDVVIANILLN-----------PLPQLADHIVSYAKPGAVVGI-SGILSEQLPRIINRYSE 198 (222)
Q Consensus 148 ~~~D~v~~~~~~~-----------~~~~~l~~~~~~LkpgG~l~~-~~~~~~~~~~~~~~~~~ 198 (222)
...|+++...+-. .....++.+.+ +++|..++. ++......+++.+.+.+
T Consensus 72 ~~ad~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~pgtt~~l~~~~~~ 133 (388)
T PRK15057 72 RDADYVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKSTVPVGFTAAMHKKYRT 133 (388)
T ss_pred cCCCEEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeeecCCchHHHHHHHhhc
Confidence 4468887654422 23445677777 677776664 67788888888877654
No 418
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=76.87 E-value=14 Score=31.39 Aligned_cols=98 Identities=15% Similarity=0.133 Sum_probs=56.1
Q ss_pred hcCCCcEEEEccCC-CHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371 56 IKGGELFLDYGTGS-GILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE 134 (222)
Q Consensus 56 ~~~~~~vLD~G~G~-G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 134 (222)
+.++.+||-.|+|. |..+..+++....++++++.++..++.+++ .+.. . +....-..+. ..
T Consensus 161 ~~~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~~----~g~~--~--~i~~~~~~~~-------~~--- 222 (333)
T cd08296 161 AKPGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADLARK----LGAH--H--YIDTSKEDVA-------EA--- 222 (333)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH----cCCc--E--EecCCCccHH-------HH---
Confidence 45688999998644 445555555533579999998887777743 2321 1 1111100010 00
Q ss_pred ccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEec
Q 047371 135 YLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISG 183 (222)
Q Consensus 135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 183 (222)
+. ....+|+++.... ....+..+.+.++++|.++..+
T Consensus 223 ------~~---~~~~~d~vi~~~g---~~~~~~~~~~~l~~~G~~v~~g 259 (333)
T cd08296 223 ------LQ---ELGGAKLILATAP---NAKAISALVGGLAPRGKLLILG 259 (333)
T ss_pred ------HH---hcCCCCEEEECCC---chHHHHHHHHHcccCCEEEEEe
Confidence 01 1134798885321 2356777888999999988743
No 419
>PRK05854 short chain dehydrogenase; Provisional
Probab=76.79 E-value=19 Score=30.55 Aligned_cols=62 Identities=15% Similarity=0.066 Sum_probs=38.8
Q ss_pred CCCcEEEEccCCCH---HHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccc
Q 047371 58 GGELFLDYGTGSGI---LGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTF 121 (222)
Q Consensus 58 ~~~~vLD~G~G~G~---~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~ 121 (222)
.+++++-.|++.|. ++..+++.+ .+|+.+..+....+.+.+.+....- ..++.+...|....
T Consensus 13 ~gk~~lITGas~GIG~~~a~~La~~G-~~Vil~~R~~~~~~~~~~~l~~~~~-~~~v~~~~~Dl~d~ 77 (313)
T PRK05854 13 SGKRAVVTGASDGLGLGLARRLAAAG-AEVILPVRNRAKGEAAVAAIRTAVP-DAKLSLRALDLSSL 77 (313)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHHhCC-CCceEEEEecCCCH
Confidence 46788888877652 444455555 6899999988777766655543221 12566666776543
No 420
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=76.68 E-value=11 Score=32.77 Aligned_cols=102 Identities=19% Similarity=0.231 Sum_probs=56.2
Q ss_pred hcCCCcEEEEccCC-CHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371 56 IKGGELFLDYGTGS-GILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV 133 (222)
Q Consensus 56 ~~~~~~vLD~G~G~-G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 133 (222)
++++.+||-.|+|. |..+..+++. +...+++++.++...+.+++ .+.. .-+.....+. .+. ..+
T Consensus 181 ~~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~----~g~~-~~v~~~~~~~-~~~----~~l---- 246 (365)
T cd05279 181 VTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQ----LGAT-ECINPRDQDK-PIV----EVL---- 246 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----hCCC-eecccccccc-hHH----HHH----
Confidence 56788888887643 3444445554 55568999988888777743 2321 0111111100 000 000
Q ss_pred hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHccc-CCeEEEEec
Q 047371 134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAK-PGAVVGISG 183 (222)
Q Consensus 134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~ 183 (222)
..+. .+.+|+++.... -...+....+.++ ++|.++..+
T Consensus 247 --------~~~~-~~~~d~vid~~g---~~~~~~~~~~~l~~~~G~~v~~g 285 (365)
T cd05279 247 --------TEMT-DGGVDYAFEVIG---SADTLKQALDATRLGGGTSVVVG 285 (365)
T ss_pred --------HHHh-CCCCcEEEECCC---CHHHHHHHHHHhccCCCEEEEEe
Confidence 0111 246899985321 1356777888888 999988753
No 421
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=76.60 E-value=18 Score=32.93 Aligned_cols=106 Identities=19% Similarity=0.141 Sum_probs=61.3
Q ss_pred CCcEEEEccCCCH--HHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEe-cCCcccccccccccccchh
Q 047371 59 GELFLDYGTGSGI--LGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHL-VPDRTFTASMNERVDGVVE 134 (222)
Q Consensus 59 ~~~vLD~G~G~G~--~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~~~~~ 134 (222)
.+.+.|+|.|.|. .+....-. -...+..||.+.++......+.+. +-....+.... .-...+.
T Consensus 201 pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~-~~~~g~~~v~~~~~~r~~~------------ 267 (491)
T KOG2539|consen 201 PDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRD-GSHIGEPIVRKLVFHRQRL------------ 267 (491)
T ss_pred hHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcC-hhhcCchhccccchhcccC------------
Confidence 4578888777664 33332222 246799999999999999887754 11100111111 1111110
Q ss_pred ccccccccCCCCCCCeeEEEeccccccH-------HHHHHHHHHcccCCeEEEEecCC
Q 047371 135 YLSSHEIRGISETEEYDVVIANILLNPL-------PQLADHIVSYAKPGAVVGISGIL 185 (222)
Q Consensus 135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~~-------~~~l~~~~~~LkpgG~l~~~~~~ 185 (222)
+....+.||++++...++.. ...-....+..++|+++++..-.
T Consensus 268 --------pi~~~~~yDlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g 317 (491)
T KOG2539|consen 268 --------PIDIKNGYDLVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKG 317 (491)
T ss_pred --------CCCcccceeeEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecC
Confidence 11145569999987655442 12356777889999999885443
No 422
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=76.58 E-value=29 Score=29.18 Aligned_cols=94 Identities=13% Similarity=0.115 Sum_probs=56.3
Q ss_pred CcEEEEccCCC--HHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhc-------CCCC--------CceeEEecCCcccc
Q 047371 60 ELFLDYGTGSG--ILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALN-------NIGP--------KKIKLHLVPDRTFT 122 (222)
Q Consensus 60 ~~vLD~G~G~G--~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~-------~~~~--------~~v~~~~~~~~~~~ 122 (222)
.+|.-+|+|.- .++..++..+ .+|+..|.+++.++.+.+.+..+ +.-. .++... .+
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~----- 77 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAG-YDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTA-TD----- 77 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCC-CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEee-CC-----
Confidence 45777888863 3555566665 57999999999988876543321 1100 001110 00
Q ss_pred cccccccccchhccccccccCCCCCCCeeEEEeccccc--cHHHHHHHHHHcccCCeEEEE
Q 047371 123 ASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLN--PLPQLADHIVSYAKPGAVVGI 181 (222)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~--~~~~~l~~~~~~LkpgG~l~~ 181 (222)
+......|+|+...+-. ....+++.+...++++..++.
T Consensus 78 ---------------------~~~~~~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s 117 (292)
T PRK07530 78 ---------------------LEDLADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILAT 117 (292)
T ss_pred ---------------------HHHhcCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEE
Confidence 00233579999766543 245677888889999887664
No 423
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=76.45 E-value=18 Score=31.48 Aligned_cols=101 Identities=10% Similarity=0.088 Sum_probs=59.3
Q ss_pred hcCCCcEEEEccCC-CHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEec-CCcccccccccccccch
Q 047371 56 IKGGELFLDYGTGS-GILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLV-PDRTFTASMNERVDGVV 133 (222)
Q Consensus 56 ~~~~~~vLD~G~G~-G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~~~ 133 (222)
+.||+++--+|.|. |.++...++.=.-+|+++|-+...-+.|-+.+ |.+ .-+... +.+.. ....+.
T Consensus 179 ~~pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~L---GAd---~fv~~~~d~d~~-----~~~~~~- 246 (360)
T KOG0023|consen 179 LGPGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSL---GAD---VFVDSTEDPDIM-----KAIMKT- 246 (360)
T ss_pred CCCCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHhc---Ccc---eeEEecCCHHHH-----HHHHHh-
Confidence 66899888888765 88888888763468999999886655554433 432 112222 21111 000000
Q ss_pred hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCC
Q 047371 134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGIL 185 (222)
Q Consensus 134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 185 (222)
-+.-.|-+..- -...++.+.++||++|.+++.+.+
T Consensus 247 ------------~dg~~~~v~~~-----a~~~~~~~~~~lk~~Gt~V~vg~p 281 (360)
T KOG0023|consen 247 ------------TDGGIDTVSNL-----AEHALEPLLGLLKVNGTLVLVGLP 281 (360)
T ss_pred ------------hcCcceeeeec-----cccchHHHHHHhhcCCEEEEEeCc
Confidence 23334544421 233456677899999999986554
No 424
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=76.28 E-value=13 Score=28.22 Aligned_cols=99 Identities=16% Similarity=0.163 Sum_probs=55.7
Q ss_pred EEEEccCCCHHHH--HHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccccc
Q 047371 62 FLDYGTGSGILGI--AAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSSH 139 (222)
Q Consensus 62 vLD~G~G~G~~~~--~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (222)
|.-+|+|++..++ .++..+ .+|+....++..++..++.-. +......+.+.. ..... .+...
T Consensus 2 I~ViGaG~~G~AlA~~la~~g-~~V~l~~~~~~~~~~i~~~~~-n~~~~~~~~l~~--~i~~t----~dl~~-------- 65 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADNG-HEVTLWGRDEEQIEEINETRQ-NPKYLPGIKLPE--NIKAT----TDLEE-------- 65 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHCT-EEEEEETSCHHHHHHHHHHTS-ETTTSTTSBEET--TEEEE----SSHHH--------
T ss_pred EEEECcCHHHHHHHHHHHHcC-CEEEEEeccHHHHHHHHHhCC-CCCCCCCcccCc--ccccc----cCHHH--------
Confidence 5567777765444 344454 689999999987777665422 111001111110 00000 00000
Q ss_pred cccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEe
Q 047371 140 EIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGIS 182 (222)
Q Consensus 140 ~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 182 (222)
.....|+|+..-|-.....+++++..+++++-.+++.
T Consensus 66 ------a~~~ad~IiiavPs~~~~~~~~~l~~~l~~~~~ii~~ 102 (157)
T PF01210_consen 66 ------ALEDADIIIIAVPSQAHREVLEQLAPYLKKGQIIISA 102 (157)
T ss_dssp ------HHTT-SEEEE-S-GGGHHHHHHHHTTTSHTT-EEEET
T ss_pred ------HhCcccEEEecccHHHHHHHHHHHhhccCCCCEEEEe
Confidence 1235799999888888899999999999888777763
No 425
>PRK10083 putative oxidoreductase; Provisional
Probab=75.98 E-value=15 Score=31.23 Aligned_cols=100 Identities=15% Similarity=0.261 Sum_probs=56.2
Q ss_pred hcCCCcEEEEccCC-CHHHHHHHH-h-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccc
Q 047371 56 IKGGELFLDYGTGS-GILGIAAIK-F-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGV 132 (222)
Q Consensus 56 ~~~~~~vLD~G~G~-G~~~~~la~-~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 132 (222)
++++++|+-.|+|. |..+..+++ . +...++++|.++...+.+++. +.. .+ +...+ ..+. ..+
T Consensus 158 ~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~----Ga~--~~-i~~~~-~~~~-------~~~ 222 (339)
T PRK10083 158 PTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKES----GAD--WV-INNAQ-EPLG-------EAL 222 (339)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHh----CCc--EE-ecCcc-ccHH-------HHH
Confidence 56788999998653 344455555 3 666799999998887777642 321 11 11000 0110 000
Q ss_pred hhccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecC
Q 047371 133 VEYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGI 184 (222)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 184 (222)
.. ....+|+++.... -...+....+.|+++|.++..+.
T Consensus 223 ---------~~--~g~~~d~vid~~g---~~~~~~~~~~~l~~~G~~v~~g~ 260 (339)
T PRK10083 223 ---------EE--KGIKPTLIIDAAC---HPSILEEAVTLASPAARIVLMGF 260 (339)
T ss_pred ---------hc--CCCCCCEEEECCC---CHHHHHHHHHHhhcCCEEEEEcc
Confidence 00 1123567765321 13457778889999999887543
No 426
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=75.86 E-value=45 Score=27.79 Aligned_cols=125 Identities=14% Similarity=0.048 Sum_probs=65.0
Q ss_pred hhHHHHHHHHhhhcC-CCcEEEEccCCCHHHHHHHHhCCCEEEEEeCChH-HHHHHHHHHHhcCCC-CCceeEEecCCcc
Q 047371 44 TTKLCLLLLQSLIKG-GELFLDYGTGSGILGIAAIKFGAAMFVGVDIDPQ-VIKSAHQNAALNNIG-PKKIKLHLVPDRT 120 (222)
Q Consensus 44 ~~~~~~~~l~~~~~~-~~~vLD~G~G~G~~~~~la~~~~~~v~gvD~s~~-~l~~a~~~~~~~~~~-~~~v~~~~~~~~~ 120 (222)
.++.+-+.+...+.. ...|+.+|||-=.-...+.... .+.-.|++.. .++.-++.+...+.. ..+..++..|..
T Consensus 66 Rtr~~D~~i~~~~~~g~~qvV~LGaGlDTr~~Rl~~~~--~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~- 142 (260)
T TIGR00027 66 RTRFFDDFLLAAVAAGIRQVVILGAGLDTRAYRLPWPD--GTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLR- 142 (260)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEeCCccccHHHhcCCCC--CCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCch-
Confidence 344444455554433 3479999999866655543222 2344455444 455555555543321 245666666654
Q ss_pred cccccccccccchhccccccccCCCCCCCeeEEEecccccc-----HHHHHHHHHHcccCCeEEEEecC
Q 047371 121 FTASMNERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP-----LPQLADHIVSYAKPGAVVGISGI 184 (222)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~ 184 (222)
-.+ ...+. ...+ ....--++++-..+.. ...++..+.+...||+.+++...
T Consensus 143 ~~w-----~~~L~-------~~gf-d~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~ 198 (260)
T TIGR00027 143 QDW-----PAALA-------AAGF-DPTAPTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYV 198 (260)
T ss_pred hhH-----HHHHH-------hCCC-CCCCCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEec
Confidence 111 11110 0001 1222345555554433 34578888888889999988644
No 427
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=75.78 E-value=16 Score=30.81 Aligned_cols=99 Identities=17% Similarity=0.136 Sum_probs=60.3
Q ss_pred hcCCCcEEEEcc--CCCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371 56 IKGGELFLDYGT--GSGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV 133 (222)
Q Consensus 56 ~~~~~~vLD~G~--G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 133 (222)
+++|++||--.+ |.|.++..+.+....++++.--+.+..+.|+++-..+. |.+...|.. ..
T Consensus 144 vkpGhtVlvhaAAGGVGlll~Ql~ra~~a~tI~~asTaeK~~~akenG~~h~-----I~y~~eD~v----------~~-- 206 (336)
T KOG1197|consen 144 VKPGHTVLVHAAAGGVGLLLCQLLRAVGAHTIATASTAEKHEIAKENGAEHP-----IDYSTEDYV----------DE-- 206 (336)
T ss_pred CCCCCEEEEEeccccHHHHHHHHHHhcCcEEEEEeccHHHHHHHHhcCCcce-----eeccchhHH----------HH--
Confidence 678998876543 34566666666655789998888888888877533222 223322221 11
Q ss_pred hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEe
Q 047371 134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGIS 182 (222)
Q Consensus 134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 182 (222)
...+.....+|++.-... .+.+..-..+||++|+++..
T Consensus 207 -------V~kiTngKGVd~vyDsvG----~dt~~~sl~~Lk~~G~mVSf 244 (336)
T KOG1197|consen 207 -------VKKITNGKGVDAVYDSVG----KDTFAKSLAALKPMGKMVSF 244 (336)
T ss_pred -------HHhccCCCCceeeecccc----chhhHHHHHHhccCceEEEe
Confidence 112223556888875432 34556667789999998873
No 428
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=75.47 E-value=21 Score=28.54 Aligned_cols=33 Identities=27% Similarity=0.233 Sum_probs=26.8
Q ss_pred CCCcEEEEccCC-CH-HHHHHHHhCCCEEEEEeCC
Q 047371 58 GGELFLDYGTGS-GI-LGIAAIKFGAAMFVGVDID 90 (222)
Q Consensus 58 ~~~~vLD~G~G~-G~-~~~~la~~~~~~v~gvD~s 90 (222)
...+|+-+|||. |. ++..|+..|..+++.+|.+
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 478899999996 54 5667778888899999987
No 429
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=75.13 E-value=20 Score=30.41 Aligned_cols=100 Identities=17% Similarity=0.229 Sum_probs=55.8
Q ss_pred hcCCCcEEEEccCC-CHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371 56 IKGGELFLDYGTGS-GILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV 133 (222)
Q Consensus 56 ~~~~~~vLD~G~G~-G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 133 (222)
..++.+||-.|+|. |..+..+++. +..++++++-++...+.+++ .+.. . ....... +.. .
T Consensus 165 ~~~~~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~----~g~~--~--~~~~~~~-~~~----~----- 226 (340)
T cd05284 165 LDPGSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSEEALKLAER----LGAD--H--VLNASDD-VVE----E----- 226 (340)
T ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHH----hCCc--E--EEcCCcc-HHH----H-----
Confidence 45688898888554 3333444544 43688999888876665533 2321 1 1111111 100 0
Q ss_pred hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEec
Q 047371 134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISG 183 (222)
Q Consensus 134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 183 (222)
+..+.+...+|+++..... ...++.+.+.|+++|.++..+
T Consensus 227 -------i~~~~~~~~~dvvld~~g~---~~~~~~~~~~l~~~g~~i~~g 266 (340)
T cd05284 227 -------VRELTGGRGADAVIDFVGS---DETLALAAKLLAKGGRYVIVG 266 (340)
T ss_pred -------HHHHhCCCCCCEEEEcCCC---HHHHHHHHHHhhcCCEEEEEc
Confidence 0111133468999864322 346777888899999988654
No 430
>PRK06701 short chain dehydrogenase; Provisional
Probab=75.13 E-value=40 Score=28.18 Aligned_cols=59 Identities=24% Similarity=0.150 Sum_probs=33.1
Q ss_pred CCCcEEEEccCCCH---HHHHHHHhCCCEEEEEeCChH-HHHHHHHHHHhcCCCCCceeEEecCCcc
Q 047371 58 GGELFLDYGTGSGI---LGIAAIKFGAAMFVGVDIDPQ-VIKSAHQNAALNNIGPKKIKLHLVPDRT 120 (222)
Q Consensus 58 ~~~~vLD~G~G~G~---~~~~la~~~~~~v~gvD~s~~-~l~~a~~~~~~~~~~~~~v~~~~~~~~~ 120 (222)
+++++|-.|++.|. ++..+++.+ .+|+.++.++. ..+.....+...+ .++.+...|...
T Consensus 45 ~~k~iLItGasggIG~~la~~l~~~G-~~V~l~~r~~~~~~~~~~~~~~~~~---~~~~~~~~Dl~~ 107 (290)
T PRK06701 45 KGKVALITGGDSGIGRAVAVLFAKEG-ADIAIVYLDEHEDANETKQRVEKEG---VKCLLIPGDVSD 107 (290)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCcchHHHHHHHHHHhcC---CeEEEEEccCCC
Confidence 46788888876652 444455555 57888887643 2333333333222 245566666544
No 431
>PRK07576 short chain dehydrogenase; Provisional
Probab=75.11 E-value=44 Score=27.31 Aligned_cols=57 Identities=12% Similarity=0.007 Sum_probs=34.3
Q ss_pred CCCcEEEEccCCCHHHH----HHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCc
Q 047371 58 GGELFLDYGTGSGILGI----AAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDR 119 (222)
Q Consensus 58 ~~~~vLD~G~G~G~~~~----~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~ 119 (222)
+++++|-.|++ |.++. .++..+ .+|++++.++..++...+.+...+ .++.+...|..
T Consensus 8 ~~k~ilItGas-ggIG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~Dv~ 68 (264)
T PRK07576 8 AGKNVVVVGGT-SGINLGIAQAFARAG-ANVAVASRSQEKVDAAVAQLQQAG---PEGLGVSADVR 68 (264)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHHhC---CceEEEECCCC
Confidence 57788888854 44444 344444 579999998877766554443322 13445555654
No 432
>PRK08507 prephenate dehydrogenase; Validated
Probab=75.00 E-value=16 Score=30.57 Aligned_cols=84 Identities=20% Similarity=0.246 Sum_probs=50.0
Q ss_pred cEEEEccCC--CHHHHHHHHhCC-CEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccc
Q 047371 61 LFLDYGTGS--GILGIAAIKFGA-AMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLS 137 (222)
Q Consensus 61 ~vLD~G~G~--G~~~~~la~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (222)
+|.=+|+|. |.++..+.+.+. .+++++|.++..++.+.+ .+.. .. ..+..
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~----~g~~----~~-~~~~~------------------ 54 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALE----LGLV----DE-IVSFE------------------ 54 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHH----CCCC----cc-cCCHH------------------
Confidence 355667665 234455555443 479999999987776543 2321 00 00100
Q ss_pred cccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEE
Q 047371 138 SHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVG 180 (222)
Q Consensus 138 ~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~ 180 (222)
.....|+|+...+.....+.+..+.. ++++..++
T Consensus 55 --------~~~~aD~Vilavp~~~~~~~~~~l~~-l~~~~iv~ 88 (275)
T PRK08507 55 --------ELKKCDVIFLAIPVDAIIEILPKLLD-IKENTTII 88 (275)
T ss_pred --------HHhcCCEEEEeCcHHHHHHHHHHHhc-cCCCCEEE
Confidence 01127999987777777778888887 88776444
No 433
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=74.82 E-value=17 Score=30.49 Aligned_cols=40 Identities=25% Similarity=0.248 Sum_probs=28.6
Q ss_pred cEEEEccCC-C-HHHHHHHHhCCCEEEEEeCChHHHHHHHHHH
Q 047371 61 LFLDYGTGS-G-ILGIAAIKFGAAMFVGVDIDPQVIKSAHQNA 101 (222)
Q Consensus 61 ~vLD~G~G~-G-~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~ 101 (222)
+|.-+|+|. | .++..+++.+ .+|+.+|.+++.++.+.+..
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G-~~V~~~d~~~~~~~~~~~~~ 44 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSG-FQTTLVDIKQEQLESAQQEI 44 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHH
Confidence 466778775 3 3555555565 47999999999998887653
No 434
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=74.60 E-value=11 Score=32.72 Aligned_cols=100 Identities=21% Similarity=0.271 Sum_probs=54.3
Q ss_pred cCCCcEEEEccCC-CHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371 57 KGGELFLDYGTGS-GILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE 134 (222)
Q Consensus 57 ~~~~~vLD~G~G~-G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 134 (222)
.++.+||-.|+|. |..+..+++. +...+++++-++...+.++. .+.. . +.......+. ..
T Consensus 186 ~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~----~g~~--~--v~~~~~~~~~----~~------ 247 (367)
T cd08263 186 RPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKE----LGAT--H--TVNAAKEDAV----AA------ 247 (367)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----hCCc--e--EecCCcccHH----HH------
Confidence 5677888766542 3444445554 54449999988877766643 2321 1 1111111110 00
Q ss_pred ccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEec
Q 047371 135 YLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISG 183 (222)
Q Consensus 135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 183 (222)
+........+|+++....- ...+..+.+.|+++|.++..+
T Consensus 248 ------l~~~~~~~~~d~vld~vg~---~~~~~~~~~~l~~~G~~v~~g 287 (367)
T cd08263 248 ------IREITGGRGVDVVVEALGK---PETFKLALDVVRDGGRAVVVG 287 (367)
T ss_pred ------HHHHhCCCCCCEEEEeCCC---HHHHHHHHHHHhcCCEEEEEc
Confidence 0001134568999964321 136777888999999988653
No 435
>PRK08324 short chain dehydrogenase; Validated
Probab=74.53 E-value=29 Score=33.14 Aligned_cols=57 Identities=18% Similarity=0.110 Sum_probs=34.5
Q ss_pred CCCcEEEEccCCCHHHH----HHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcc
Q 047371 58 GGELFLDYGTGSGILGI----AAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRT 120 (222)
Q Consensus 58 ~~~~vLD~G~G~G~~~~----~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~ 120 (222)
+++.+|-.|++. .++. .+++.+ .+|+++|.++..++.+...+... .++.+...|...
T Consensus 421 ~gk~vLVTGasg-gIG~~la~~L~~~G-a~Vvl~~r~~~~~~~~~~~l~~~----~~v~~v~~Dvtd 481 (681)
T PRK08324 421 AGKVALVTGAAG-GIGKATAKRLAAEG-ACVVLADLDEEAAEAAAAELGGP----DRALGVACDVTD 481 (681)
T ss_pred CCCEEEEecCCC-HHHHHHHHHHHHCc-CEEEEEeCCHHHHHHHHHHHhcc----CcEEEEEecCCC
Confidence 357788877644 3333 344445 58999999998776665544321 245566666543
No 436
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=74.51 E-value=8.3 Score=33.98 Aligned_cols=40 Identities=18% Similarity=0.171 Sum_probs=26.7
Q ss_pred CCcEEEEccCC-CHHHHHHHH-hCCCEEEEEeCChHHHHHHHH
Q 047371 59 GELFLDYGTGS-GILGIAAIK-FGAAMFVGVDIDPQVIKSAHQ 99 (222)
Q Consensus 59 ~~~vLD~G~G~-G~~~~~la~-~~~~~v~gvD~s~~~l~~a~~ 99 (222)
+.+|+-+|+|. |..+...+. .+ .+|+++|.++..++.+..
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lG-a~V~v~d~~~~~~~~l~~ 208 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLG-ATVTILDINIDRLRQLDA 208 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCC-CeEEEEECCHHHHHHHHH
Confidence 45688888875 444444333 45 479999999877665543
No 437
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=73.99 E-value=35 Score=29.51 Aligned_cols=109 Identities=20% Similarity=0.236 Sum_probs=64.7
Q ss_pred CcEEEEccCC-C-HHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHh-------cCCCC----CceeEEecCCcccccccc
Q 047371 60 ELFLDYGTGS-G-ILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAAL-------NNIGP----KKIKLHLVPDRTFTASMN 126 (222)
Q Consensus 60 ~~vLD~G~G~-G-~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~-------~~~~~----~~v~~~~~~~~~~~~~~~ 126 (222)
.+|--+|+|+ | .++..++..| -+|+..|.++..++.++..+.. .++.. .++.+.. .+
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG-~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~----~l----- 77 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHG-LDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVA----TI----- 77 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecC----CH-----
Confidence 4688889886 3 4666666666 5899999999988877654431 11110 0111100 00
Q ss_pred cccccchhccccccccCCCCCCCeeEEEecccccc--HHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHH
Q 047371 127 ERVDGVVEYLSSHEIRGISETEEYDVVIANILLNP--LPQLADHIVSYAKPGAVVGISGILSEQLPRIINRY 196 (222)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~ 196 (222)
.. .....|+|+-+.+-.. -..++.++.+.++|+.++..++. .-...++.+.+
T Consensus 78 ---~~--------------av~~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS-~l~~s~la~~~ 131 (321)
T PRK07066 78 ---EA--------------CVADADFIQESAPEREALKLELHERISRAAKPDAIIASSTS-GLLPTDFYARA 131 (321)
T ss_pred ---HH--------------HhcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCC-ccCHHHHHHhc
Confidence 00 2345799998765443 34578899999999986665544 33444454443
No 438
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=73.81 E-value=11 Score=33.47 Aligned_cols=61 Identities=7% Similarity=-0.011 Sum_probs=48.3
Q ss_pred CCCcEEEEccCCCHHHHHHHHh--CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcc
Q 047371 58 GGELFLDYGTGSGILGIAAIKF--GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRT 120 (222)
Q Consensus 58 ~~~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~ 120 (222)
+|.+|+|.+|-.|.-+.+++.. ...++.|+|.++...+..+.-+...|.. .+....+|+..
T Consensus 213 ~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~--~~~~~~~df~~ 275 (413)
T KOG2360|consen 213 PGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVS--IVESVEGDFLN 275 (413)
T ss_pred CCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCC--ccccccccccC
Confidence 5789999999999988888753 3578999999999998888888777765 45555666554
No 439
>PRK06125 short chain dehydrogenase; Provisional
Probab=73.74 E-value=29 Score=28.18 Aligned_cols=60 Identities=15% Similarity=0.128 Sum_probs=36.7
Q ss_pred CCCcEEEEccCCC---HHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcc
Q 047371 58 GGELFLDYGTGSG---ILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRT 120 (222)
Q Consensus 58 ~~~~vLD~G~G~G---~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~ 120 (222)
.++++|-.|++.| .++..+++.+ .+|++++.++..++.+...+....- .++.+...|...
T Consensus 6 ~~k~vlItG~~~giG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~~D~~~ 68 (259)
T PRK06125 6 AGKRVLITGASKGIGAAAAEAFAAEG-CHLHLVARDADALEALAADLRAAHG--VDVAVHALDLSS 68 (259)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHhhcC--CceEEEEecCCC
Confidence 4678888887655 2333455555 4899999998877766555543221 245555565543
No 440
>PRK08339 short chain dehydrogenase; Provisional
Probab=73.72 E-value=26 Score=28.82 Aligned_cols=60 Identities=13% Similarity=0.188 Sum_probs=38.7
Q ss_pred CCCcEEEEccCCCH---HHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcc
Q 047371 58 GGELFLDYGTGSGI---LGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRT 120 (222)
Q Consensus 58 ~~~~vLD~G~G~G~---~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~ 120 (222)
.++++|-.|++.|. ++..+++.+ .+|+.++.++..++.+.+.+.... ..++.+...|...
T Consensus 7 ~~k~~lItGas~gIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~ 69 (263)
T PRK08339 7 SGKLAFTTASSKGIGFGVARVLARAG-ADVILLSRNEENLKKAREKIKSES--NVDVSYIVADLTK 69 (263)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhhc--CCceEEEEecCCC
Confidence 47788888877662 445566666 579999999887776665543321 1245666666654
No 441
>PRK05867 short chain dehydrogenase; Provisional
Probab=73.29 E-value=21 Score=28.92 Aligned_cols=59 Identities=14% Similarity=0.107 Sum_probs=38.1
Q ss_pred CCCcEEEEccCCC---HHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcc
Q 047371 58 GGELFLDYGTGSG---ILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRT 120 (222)
Q Consensus 58 ~~~~vLD~G~G~G---~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~ 120 (222)
.++++|-.|++.| .++..+++.+ .+|+.++.++..++.....+...+ .++.....|...
T Consensus 8 ~~k~vlVtGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~~D~~~ 69 (253)
T PRK05867 8 HGKRALITGASTGIGKRVALAYVEAG-AQVAIAARHLDALEKLADEIGTSG---GKVVPVCCDVSQ 69 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEcCCHHHHHHHHHHHHhcC---CeEEEEEccCCC
Confidence 4788999987665 2444555555 579999999887776665554333 245555666543
No 442
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=73.15 E-value=8.6 Score=32.58 Aligned_cols=98 Identities=11% Similarity=0.110 Sum_probs=52.2
Q ss_pred CCCcEEEE--ccCC-CHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371 58 GGELFLDY--GTGS-GILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE 134 (222)
Q Consensus 58 ~~~~vLD~--G~G~-G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 134 (222)
++..++-+ |+|. |..+..+++....++++++.++...+.+++ .+.. ..+. .....+. ..
T Consensus 142 ~~~~vlv~~~g~g~vG~~a~q~a~~~G~~vi~~~~~~~~~~~~~~----~g~~---~~i~-~~~~~~~----~~------ 203 (324)
T cd08291 142 EGAKAVVHTAAASALGRMLVRLCKADGIKVINIVRRKEQVDLLKK----IGAE---YVLN-SSDPDFL----ED------ 203 (324)
T ss_pred CCCcEEEEccCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCc---EEEE-CCCccHH----HH------
Confidence 34455544 3332 455555666544689999999988777765 2322 1111 1111110 00
Q ss_pred ccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEec
Q 047371 135 YLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISG 183 (222)
Q Consensus 135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 183 (222)
+..+.....+|+++....- ..+....+.++++|.++..+
T Consensus 204 ------v~~~~~~~~~d~vid~~g~----~~~~~~~~~l~~~G~~v~~g 242 (324)
T cd08291 204 ------LKELIAKLNATIFFDAVGG----GLTGQILLAMPYGSTLYVYG 242 (324)
T ss_pred ------HHHHhCCCCCcEEEECCCc----HHHHHHHHhhCCCCEEEEEE
Confidence 0011133468999854321 23455677889999988754
No 443
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=72.90 E-value=13 Score=32.09 Aligned_cols=100 Identities=15% Similarity=0.266 Sum_probs=55.9
Q ss_pred hcCCCcEEEEccCC-CHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371 56 IKGGELFLDYGTGS-GILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV 133 (222)
Q Consensus 56 ~~~~~~vLD~G~G~-G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 133 (222)
+.++.+||-.|+|. |..+..+++. +..++++++.++...+.++. .+.. . +.......+. ..
T Consensus 180 ~~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~----~g~~--~--vv~~~~~~~~----~~----- 242 (363)
T cd08279 180 VRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARR----FGAT--H--TVNASEDDAV----EA----- 242 (363)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH----hCCe--E--EeCCCCccHH----HH-----
Confidence 45788888887643 4455555554 54459999988877666542 2321 1 1111111110 00
Q ss_pred hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEe
Q 047371 134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGIS 182 (222)
Q Consensus 134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 182 (222)
+..+.+.+.+|+++....- ...+..+.+.|+++|.++..
T Consensus 243 -------l~~~~~~~~vd~vld~~~~---~~~~~~~~~~l~~~G~~v~~ 281 (363)
T cd08279 243 -------VRDLTDGRGADYAFEAVGR---AATIRQALAMTRKGGTAVVV 281 (363)
T ss_pred -------HHHHcCCCCCCEEEEcCCC---hHHHHHHHHHhhcCCeEEEE
Confidence 0111134568988854321 35677888899999998864
No 444
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=72.83 E-value=12 Score=31.91 Aligned_cols=102 Identities=20% Similarity=0.245 Sum_probs=54.9
Q ss_pred hcCCCcEEEEccCC-CHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371 56 IKGGELFLDYGTGS-GILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV 133 (222)
Q Consensus 56 ~~~~~~vLD~G~G~-G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 133 (222)
..++.+++-.|+|. |..+..+++. +...+++++-++...+.++.. +.. . +.......+. ..
T Consensus 159 ~~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~~----g~~--~--~v~~~~~~~~-------~~-- 221 (340)
T TIGR00692 159 PISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKM----GAT--Y--VVNPFKEDVV-------KE-- 221 (340)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----CCc--E--EEcccccCHH-------HH--
Confidence 45678887766542 3444555554 433488888887666655432 321 1 1111111110 00
Q ss_pred hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecC
Q 047371 134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGI 184 (222)
Q Consensus 134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 184 (222)
+......+.+|+++.... -...+..+.+.|+++|.++..+.
T Consensus 222 -------l~~~~~~~~~d~vld~~g---~~~~~~~~~~~l~~~g~~v~~g~ 262 (340)
T TIGR00692 222 -------VADLTDGEGVDVFLEMSG---APKALEQGLQAVTPGGRVSLLGL 262 (340)
T ss_pred -------HHHhcCCCCCCEEEECCC---CHHHHHHHHHhhcCCCEEEEEcc
Confidence 001113456899986422 13567778889999999887543
No 445
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=72.77 E-value=50 Score=29.70 Aligned_cols=46 Identities=15% Similarity=0.179 Sum_probs=29.1
Q ss_pred CCeeEEEeccccc----------cHHHHHHHHHHcccCCeEEEE-ecCCCCcHHHHH
Q 047371 148 EEYDVVIANILLN----------PLPQLADHIVSYAKPGAVVGI-SGILSEQLPRII 193 (222)
Q Consensus 148 ~~~D~v~~~~~~~----------~~~~~l~~~~~~LkpgG~l~~-~~~~~~~~~~~~ 193 (222)
...|+++...+.. ......+.+...+++|..++. ++......+++.
T Consensus 75 ~~advvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~ 131 (425)
T PRK15182 75 KECNFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEEC 131 (425)
T ss_pred cCCCEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHH
Confidence 3578888643321 133345778889999887766 567766666543
No 446
>PTZ00357 methyltransferase; Provisional
Probab=72.74 E-value=16 Score=35.10 Aligned_cols=107 Identities=10% Similarity=0.133 Sum_probs=58.3
Q ss_pred cEEEEccCCCHHHHHHH---H-hC-CCEEEEEeCChHHHHHHHHHHH-hcCCC------CCceeEEecCCcccccccccc
Q 047371 61 LFLDYGTGSGILGIAAI---K-FG-AAMFVGVDIDPQVIKSAHQNAA-LNNIG------PKKIKLHLVPDRTFTASMNER 128 (222)
Q Consensus 61 ~vLD~G~G~G~~~~~la---~-~~-~~~v~gvD~s~~~l~~a~~~~~-~~~~~------~~~v~~~~~~~~~~~~~~~~~ 128 (222)
.|+-+|+|-|-+..... + .+ .-+|+++|-|+.++.....+.. ..... ...|+++..|...+.....+
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~- 781 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN- 781 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc-
Confidence 58999999996544332 2 22 3579999999765444433321 11111 13578888877655210000
Q ss_pred cccchhccccccccCCCCCCCeeEEEeccccc-----cHHHHHHHHHHcccC----CeE
Q 047371 129 VDGVVEYLSSHEIRGISETEEYDVVIANILLN-----PLPQLADHIVSYAKP----GAV 178 (222)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~-----~~~~~l~~~~~~Lkp----gG~ 178 (222)
+.+..-..-+++|++++-..-. .-.+-|..+.+.||+ +|+
T Consensus 782 ----------~s~~~P~~~gKaDIVVSELLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 782 ----------GSLTLPADFGLCDLIVSELLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred ----------ccccccccccccceehHhhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 0000000124799999854321 134567777777776 675
No 447
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.56 E-value=1.2 Score=34.45 Aligned_cols=37 Identities=22% Similarity=0.384 Sum_probs=30.4
Q ss_pred CCCCeeEEEeccccccH-----HHHHHHHHHcccCCeEEEEe
Q 047371 146 ETEEYDVVIANILLNPL-----PQLADHIVSYAKPGAVVGIS 182 (222)
Q Consensus 146 ~~~~~D~v~~~~~~~~~-----~~~l~~~~~~LkpgG~l~~~ 182 (222)
.++++|+|.+.-.++|+ ...++.+++.|||||++-++
T Consensus 44 ~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriA 85 (185)
T COG4627 44 EDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIA 85 (185)
T ss_pred CCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEE
Confidence 57889999987766663 34799999999999999884
No 448
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=72.33 E-value=21 Score=30.34 Aligned_cols=96 Identities=19% Similarity=0.235 Sum_probs=53.2
Q ss_pred hcCCCcEEEEccCC-CHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371 56 IKGGELFLDYGTGS-GILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE 134 (222)
Q Consensus 56 ~~~~~~vLD~G~G~-G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 134 (222)
+.++.+++-.|+|. |..+..+++....++++++.++...+.+++ .+.. .+ +. .......
T Consensus 167 ~~~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~----~g~~--~v-i~-~~~~~~~------------ 226 (337)
T cd05283 167 VGPGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALK----LGAD--EF-IA-TKDPEAM------------ 226 (337)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH----cCCc--EE-ec-Ccchhhh------------
Confidence 45677777777643 344444555433589999998887776643 2221 11 11 1000000
Q ss_pred ccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEec
Q 047371 135 YLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISG 183 (222)
Q Consensus 135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 183 (222)
.. ..+.+|+++...... ..+..+.+.|+++|.++..+
T Consensus 227 -------~~--~~~~~d~v~~~~g~~---~~~~~~~~~l~~~G~~v~~g 263 (337)
T cd05283 227 -------KK--AAGSLDLIIDTVSAS---HDLDPYLSLLKPGGTLVLVG 263 (337)
T ss_pred -------hh--ccCCceEEEECCCCc---chHHHHHHHhcCCCEEEEEe
Confidence 00 134689998643322 24566778889999888643
No 449
>PRK05876 short chain dehydrogenase; Provisional
Probab=72.14 E-value=27 Score=29.00 Aligned_cols=59 Identities=20% Similarity=0.148 Sum_probs=37.1
Q ss_pred CCCcEEEEccCCC---HHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcc
Q 047371 58 GGELFLDYGTGSG---ILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRT 120 (222)
Q Consensus 58 ~~~~vLD~G~G~G---~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~ 120 (222)
.++++|-.|+++| .++..+++.+ .+|+.++.++..++...+.+...+ .++.+...|...
T Consensus 5 ~~k~vlVTGas~gIG~ala~~La~~G-~~Vv~~~r~~~~l~~~~~~l~~~~---~~~~~~~~Dv~d 66 (275)
T PRK05876 5 PGRGAVITGGASGIGLATGTEFARRG-ARVVLGDVDKPGLRQAVNHLRAEG---FDVHGVMCDVRH 66 (275)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcC---CeEEEEeCCCCC
Confidence 4678888887665 2444455555 579999999887776655544333 245566666544
No 450
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=71.86 E-value=4.7 Score=36.60 Aligned_cols=36 Identities=22% Similarity=0.244 Sum_probs=28.5
Q ss_pred CCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEe
Q 047371 147 TEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGIS 182 (222)
Q Consensus 147 ~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 182 (222)
....|+|++-.|-.....+.+++...||||..|+++
T Consensus 95 ~~~ADvVviLlPDt~q~~v~~~i~p~LK~Ga~L~fs 130 (487)
T PRK05225 95 IPQADLVINLTPDKQHSDVVRAVQPLMKQGAALGYS 130 (487)
T ss_pred HHhCCEEEEcCChHHHHHHHHHHHhhCCCCCEEEec
Confidence 345799998766665555679999999999999984
No 451
>PRK07109 short chain dehydrogenase; Provisional
Probab=71.72 E-value=58 Score=27.97 Aligned_cols=59 Identities=12% Similarity=0.074 Sum_probs=37.0
Q ss_pred CCCcEEEEccCCCH---HHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcc
Q 047371 58 GGELFLDYGTGSGI---LGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRT 120 (222)
Q Consensus 58 ~~~~vLD~G~G~G~---~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~ 120 (222)
.++++|-.|++.|. ++..+++.+ .+|+.++.++..++...+.+...+. ++.+...|...
T Consensus 7 ~~k~vlITGas~gIG~~la~~la~~G-~~Vvl~~R~~~~l~~~~~~l~~~g~---~~~~v~~Dv~d 68 (334)
T PRK07109 7 GRQVVVITGASAGVGRATARAFARRG-AKVVLLARGEEGLEALAAEIRAAGG---EALAVVADVAD 68 (334)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHcCC---cEEEEEecCCC
Confidence 35678888865542 333445555 5799999998887776665554432 45566666544
No 452
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=71.65 E-value=74 Score=28.34 Aligned_cols=54 Identities=11% Similarity=0.019 Sum_probs=33.5
Q ss_pred CCCcEEEEccCCCHHHHHHHH---hCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcc
Q 047371 58 GGELFLDYGTGSGILGIAAIK---FGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRT 120 (222)
Q Consensus 58 ~~~~vLD~G~G~G~~~~~la~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~ 120 (222)
...+++-+|+| .++..+++ .....++.+|.++..++.++... ..+.+..+|...
T Consensus 230 ~~~~iiIiG~G--~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~-------~~~~~i~gd~~~ 286 (453)
T PRK09496 230 PVKRVMIVGGG--NIGYYLAKLLEKEGYSVKLIERDPERAEELAEEL-------PNTLVLHGDGTD 286 (453)
T ss_pred CCCEEEEECCC--HHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC-------CCCeEEECCCCC
Confidence 35678877775 44444433 22358999999999887766532 134466666643
No 453
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=71.59 E-value=34 Score=29.05 Aligned_cols=88 Identities=20% Similarity=0.179 Sum_probs=55.2
Q ss_pred CCCcEEEEccCCCH---HHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371 58 GGELFLDYGTGSGI---LGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE 134 (222)
Q Consensus 58 ~~~~vLD~G~G~G~---~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 134 (222)
.++.||--||.+|. ++..+++.| .+++-+-.....++...+.+...+-.. ++....+|..+... .+.+.+..
T Consensus 11 ~~kvVvITGASsGIG~~lA~~la~~G-~~l~lvar~~rrl~~v~~~l~~~~~~~-~v~~~~~Dvs~~~~-~~~~~~~~-- 85 (282)
T KOG1205|consen 11 AGKVVLITGASSGIGEALAYELAKRG-AKLVLVARRARRLERVAEELRKLGSLE-KVLVLQLDVSDEES-VKKFVEWA-- 85 (282)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCC-CceEEeehhhhhHHHHHHHHHHhCCcC-ccEEEeCccCCHHH-HHHHHHHH--
Confidence 58899999999983 666677776 566677777777877755555444332 46677777654421 00110000
Q ss_pred ccccccccCCCCCCCeeEEEecccc
Q 047371 135 YLSSHEIRGISETEEYDVVIANILL 159 (222)
Q Consensus 135 ~~~~~~~~~~~~~~~~D~v~~~~~~ 159 (222)
+..-+..|+.+.|..+
T Consensus 86 ---------~~~fg~vDvLVNNAG~ 101 (282)
T KOG1205|consen 86 ---------IRHFGRVDVLVNNAGI 101 (282)
T ss_pred ---------HHhcCCCCEEEecCcc
Confidence 1246789999998764
No 454
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=70.66 E-value=12 Score=31.78 Aligned_cols=100 Identities=20% Similarity=0.246 Sum_probs=55.0
Q ss_pred hcCCCcEEEEccC-CCHHHHHHHHhCCCE-EEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371 56 IKGGELFLDYGTG-SGILGIAAIKFGAAM-FVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV 133 (222)
Q Consensus 56 ~~~~~~vLD~G~G-~G~~~~~la~~~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 133 (222)
++++.+||-.|+| .|..+..+++....+ +++++-++...+.++. .+.. . +.......+. ....
T Consensus 163 ~~~g~~VlV~g~g~vg~~~~~la~~~g~~~v~~~~~s~~~~~~~~~----~g~~--~--~~~~~~~~~~----~~i~--- 227 (343)
T cd08235 163 IKPGDTVLVIGAGPIGLLHAMLAKASGARKVIVSDLNEFRLEFAKK----LGAD--Y--TIDAAEEDLV----EKVR--- 227 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCCc--E--EecCCccCHH----HHHH---
Confidence 5678888888764 244455555553345 8888888887776643 2321 1 1111100100 0000
Q ss_pred hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEe
Q 047371 134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGIS 182 (222)
Q Consensus 134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 182 (222)
.......+|+++....- ...+..+.+.|+++|.++..
T Consensus 228 ---------~~~~~~~vd~vld~~~~---~~~~~~~~~~l~~~g~~v~~ 264 (343)
T cd08235 228 ---------ELTDGRGADVVIVATGS---PEAQAQALELVRKGGRILFF 264 (343)
T ss_pred ---------HHhCCcCCCEEEECCCC---hHHHHHHHHHhhcCCEEEEE
Confidence 01134458999864321 24667777889999998874
No 455
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=70.24 E-value=30 Score=29.40 Aligned_cols=87 Identities=16% Similarity=0.138 Sum_probs=50.1
Q ss_pred CCCcEEEEccCC-CHHHHH-HHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371 58 GGELFLDYGTGS-GILGIA-AIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY 135 (222)
Q Consensus 58 ~~~~vLD~G~G~-G~~~~~-la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 135 (222)
.+++++-+|+|. |..... +...+ .+|+++|.++...+.++. .+.. +. ....+. .
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~G-a~V~v~~r~~~~~~~~~~----~G~~-----~~--~~~~l~--------~---- 206 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALG-ANVTVGARKSAHLARITE----MGLS-----PF--HLSELA--------E---- 206 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHH----cCCe-----ee--cHHHHH--------H----
Confidence 478999999986 332222 33345 599999999876555542 2321 11 111110 0
Q ss_pred cccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEE
Q 047371 136 LSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGI 181 (222)
Q Consensus 136 ~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 181 (222)
....+|+|+...+.. -+-+...+.++|++.++-
T Consensus 207 ----------~l~~aDiVI~t~p~~---~i~~~~l~~~~~g~vIID 239 (296)
T PRK08306 207 ----------EVGKIDIIFNTIPAL---VLTKEVLSKMPPEALIID 239 (296)
T ss_pred ----------HhCCCCEEEECCChh---hhhHHHHHcCCCCcEEEE
Confidence 134589999754322 233556677889887773
No 456
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=69.28 E-value=17 Score=30.91 Aligned_cols=101 Identities=23% Similarity=0.290 Sum_probs=56.1
Q ss_pred cCCCcEEEEccCC-CHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371 57 KGGELFLDYGTGS-GILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE 134 (222)
Q Consensus 57 ~~~~~vLD~G~G~-G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 134 (222)
.++.+|+-.|+|. |..+..+++. +..++++++.++...+.+++. +.. . +.......+. ..
T Consensus 162 ~~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~l----g~~--~--~~~~~~~~~~----~~------ 223 (341)
T PRK05396 162 LVGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARKM----GAT--R--AVNVAKEDLR----DV------ 223 (341)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHh----CCc--E--EecCccccHH----HH------
Confidence 4678888877653 4455555554 544788888888766655442 321 1 1111100110 00
Q ss_pred ccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecC
Q 047371 135 YLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGI 184 (222)
Q Consensus 135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 184 (222)
+..+...+.+|+++.... ....+..+.+.|+++|.++..+.
T Consensus 224 ------~~~~~~~~~~d~v~d~~g---~~~~~~~~~~~l~~~G~~v~~g~ 264 (341)
T PRK05396 224 ------MAELGMTEGFDVGLEMSG---APSAFRQMLDNMNHGGRIAMLGI 264 (341)
T ss_pred ------HHHhcCCCCCCEEEECCC---CHHHHHHHHHHHhcCCEEEEEec
Confidence 011113456899986322 23567778889999999888644
No 457
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=69.20 E-value=15 Score=31.49 Aligned_cols=101 Identities=13% Similarity=0.153 Sum_probs=53.9
Q ss_pred hcCCCcEEEEccCC-CHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371 56 IKGGELFLDYGTGS-GILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV 133 (222)
Q Consensus 56 ~~~~~~vLD~G~G~-G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 133 (222)
+.++.+||-.|+|. |..+..+++. +...+++++.++...+.+++ .+.. . +.......+. ..+
T Consensus 172 ~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~g~~--~--v~~~~~~~~~-------~~~- 235 (350)
T cd08256 172 IKFDDVVVLAGAGPLGLGMIGAARLKNPKKLIVLDLKDERLALARK----FGAD--V--VLNPPEVDVV-------EKI- 235 (350)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCHHHHHHHHH----cCCc--E--EecCCCcCHH-------HHH-
Confidence 45677777755533 3344445554 55668899988876655543 2321 1 1111111110 000
Q ss_pred hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEec
Q 047371 134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISG 183 (222)
Q Consensus 134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 183 (222)
..+.+...+|+++....- ...+..+.+.++++|.++..+
T Consensus 236 --------~~~~~~~~vdvvld~~g~---~~~~~~~~~~l~~~G~~v~~g 274 (350)
T cd08256 236 --------KELTGGYGCDIYIEATGH---PSAVEQGLNMIRKLGRFVEFS 274 (350)
T ss_pred --------HHHhCCCCCCEEEECCCC---hHHHHHHHHHhhcCCEEEEEc
Confidence 001133458999854321 235677888999999988743
No 458
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=69.16 E-value=58 Score=26.39 Aligned_cols=58 Identities=19% Similarity=0.267 Sum_probs=32.1
Q ss_pred CCCcEEEEccCCCH---HHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccc
Q 047371 58 GGELFLDYGTGSGI---LGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTF 121 (222)
Q Consensus 58 ~~~~vLD~G~G~G~---~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~ 121 (222)
+++++|-.|++.|. ++..+++.+ .+|+.++.+.. +...+.....+ .++.+...|....
T Consensus 7 ~~k~~lItGas~gIG~aia~~l~~~G-~~vv~~~~~~~--~~~~~~~~~~~---~~~~~~~~Dl~~~ 67 (251)
T PRK12481 7 NGKVAIITGCNTGLGQGMAIGLAKAG-ADIVGVGVAEA--PETQAQVEALG---RKFHFITADLIQQ 67 (251)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEecCchH--HHHHHHHHHcC---CeEEEEEeCCCCH
Confidence 47889988877662 444455555 57888776542 22222222222 2455666665443
No 459
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=69.15 E-value=56 Score=25.91 Aligned_cols=57 Identities=19% Similarity=0.173 Sum_probs=34.3
Q ss_pred CCCcEEEEccCCCHHHH----HHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcc
Q 047371 58 GGELFLDYGTGSGILGI----AAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRT 120 (222)
Q Consensus 58 ~~~~vLD~G~G~G~~~~----~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~ 120 (222)
++++++-.|++.| ++. .+++.+ .+|++++-++.....+.+.....+ ++.+...|...
T Consensus 4 ~~~~vlItGa~g~-iG~~~a~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~Dl~~ 64 (238)
T PRK05786 4 KGKKVAIIGVSEG-LGYAVAYFALKEG-AQVCINSRNENKLKRMKKTLSKYG----NIHYVVGDVSS 64 (238)
T ss_pred CCcEEEEECCCch-HHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcC----CeEEEECCCCC
Confidence 4678998888643 333 333445 589999998877665544433221 45555565543
No 460
>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]
Probab=68.90 E-value=29 Score=29.13 Aligned_cols=89 Identities=19% Similarity=0.160 Sum_probs=57.5
Q ss_pred CCCcEEEEccCCCH---HHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchh
Q 047371 58 GGELFLDYGTGSGI---LGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVE 134 (222)
Q Consensus 58 ~~~~vLD~G~G~G~---~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 134 (222)
.++.+|--|.++|. ++..+++.+ ++|+.++.+++.++...+.....+....++.....|..... ....+++
T Consensus 7 ~gkvalVTG~s~GIG~aia~~la~~G-a~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~-----~~~~l~~ 80 (270)
T KOG0725|consen 7 AGKVALVTGGSSGIGKAIALLLAKAG-AKVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEV-----DVEKLVE 80 (270)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHH-----HHHHHHH
Confidence 57888988888883 556677776 68999999999998888777665554345666666664321 1111111
Q ss_pred ccccccccCCCCCCCeeEEEeccc
Q 047371 135 YLSSHEIRGISETEEYDVVIANIL 158 (222)
Q Consensus 135 ~~~~~~~~~~~~~~~~D~v~~~~~ 158 (222)
+.. +...++.|+++.|..
T Consensus 81 ~~~------~~~~GkidiLvnnag 98 (270)
T KOG0725|consen 81 FAV------EKFFGKIDILVNNAG 98 (270)
T ss_pred HHH------HHhCCCCCEEEEcCC
Confidence 000 112578999998764
No 461
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=68.82 E-value=41 Score=30.81 Aligned_cols=121 Identities=13% Similarity=-0.023 Sum_probs=63.9
Q ss_pred CcEEEEccCCCHH--HHHHHHhC-CCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcc
Q 047371 60 ELFLDYGTGSGIL--GIAAIKFG-AAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYL 136 (222)
Q Consensus 60 ~~vLD~G~G~G~~--~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (222)
++|.-+|+|-... +..+++.+ .-+|+++|+++..++..++... . +.....+.+...... .
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~--~-------~~e~gl~ell~~~~~---~----- 64 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQL--P-------IYEPGLDEVVKQCRG---K----- 64 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCC--c-------cCCCCHHHHHHHhhc---C-----
Confidence 3567777776443 33455554 3579999999999887654321 0 100000000000000 0
Q ss_pred cccccc-CCC-CCCCeeEEEec--cccc-------------cHHHHHHHHHHcccCCeEEEE-ecCCCCcHHHHHHHHHh
Q 047371 137 SSHEIR-GIS-ETEEYDVVIAN--ILLN-------------PLPQLADHIVSYAKPGAVVGI-SGILSEQLPRIINRYSE 198 (222)
Q Consensus 137 ~~~~~~-~~~-~~~~~D~v~~~--~~~~-------------~~~~~l~~~~~~LkpgG~l~~-~~~~~~~~~~~~~~~~~ 198 (222)
...+. ++. .....|+++.. -|.. ++....+.+.+.|++|-.+++ ++.+....+++...+.+
T Consensus 65 -~l~~t~~~~~~i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~ 143 (473)
T PLN02353 65 -NLFFSTDVEKHVAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTH 143 (473)
T ss_pred -CEEEEcCHHHHHhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHh
Confidence 00000 000 12346777652 2221 355678899999998877666 46677777777766654
No 462
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=68.77 E-value=48 Score=27.89 Aligned_cols=41 Identities=20% Similarity=0.174 Sum_probs=29.5
Q ss_pred CcEEEEccCC-C-HHHHHHHHhCCCEEEEEeCChHHHHHHHHHH
Q 047371 60 ELFLDYGTGS-G-ILGIAAIKFGAAMFVGVDIDPQVIKSAHQNA 101 (222)
Q Consensus 60 ~~vLD~G~G~-G-~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~ 101 (222)
++|-=+|+|. | .++..++..+ .+|++.|.++..++.+++.+
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~~ 47 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAG-MDVWLLDSDPAALSRGLDSI 47 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcC-CeEEEEeCCHHHHHHHHHHH
Confidence 4577788875 3 3555565555 58999999999988776554
No 463
>PRK07478 short chain dehydrogenase; Provisional
Probab=68.53 E-value=39 Score=27.31 Aligned_cols=59 Identities=14% Similarity=0.014 Sum_probs=37.3
Q ss_pred CCCcEEEEccCCC---HHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcc
Q 047371 58 GGELFLDYGTGSG---ILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRT 120 (222)
Q Consensus 58 ~~~~vLD~G~G~G---~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~ 120 (222)
.++++|-.|++.| .++..+++.+ .+|+.++.++..++.+...+...+ .++.+...|...
T Consensus 5 ~~k~~lItGas~giG~~ia~~l~~~G-~~v~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~D~~~ 66 (254)
T PRK07478 5 NGKVAIITGASSGIGRAAAKLFAREG-AKVVVGARRQAELDQLVAEIRAEG---GEAVALAGDVRD 66 (254)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcC---CcEEEEEcCCCC
Confidence 3667887777655 2344455555 579999998887777665554433 245566666544
No 464
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=68.40 E-value=33 Score=29.85 Aligned_cols=34 Identities=24% Similarity=0.230 Sum_probs=27.0
Q ss_pred CCCcEEEEccCC-CH-HHHHHHHhCCCEEEEEeCCh
Q 047371 58 GGELFLDYGTGS-GI-LGIAAIKFGAAMFVGVDIDP 91 (222)
Q Consensus 58 ~~~~vLD~G~G~-G~-~~~~la~~~~~~v~gvD~s~ 91 (222)
...+|+-+|||. |. ++..|++.|..+++.+|-+.
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 467899999996 54 56677788888999999874
No 465
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=68.38 E-value=23 Score=30.09 Aligned_cols=101 Identities=18% Similarity=0.276 Sum_probs=54.8
Q ss_pred hcCCCcEEEEccCC-CHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371 56 IKGGELFLDYGTGS-GILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV 133 (222)
Q Consensus 56 ~~~~~~vLD~G~G~-G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 133 (222)
++++.+++-.|+|. |..+..+++. +...+++++.++...+.++. .+.. . +.......+. ..
T Consensus 166 ~~~g~~vlI~g~g~vg~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~ga~--~--v~~~~~~~~~-------~~-- 228 (345)
T cd08287 166 VRPGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHEDRQALARE----FGAT--D--IVAERGEEAV-------AR-- 228 (345)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCc--e--EecCCcccHH-------HH--
Confidence 45677777777653 4445555554 54569999988765555543 2321 0 1111100000 00
Q ss_pred hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEec
Q 047371 134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISG 183 (222)
Q Consensus 134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 183 (222)
+....+...+|+++.... -...+..+.+.++++|.++..+
T Consensus 229 -------i~~~~~~~~~d~il~~~g---~~~~~~~~~~~l~~~g~~v~~g 268 (345)
T cd08287 229 -------VRELTGGVGADAVLECVG---TQESMEQAIAIARPGGRVGYVG 268 (345)
T ss_pred -------HHHhcCCCCCCEEEECCC---CHHHHHHHHHhhccCCEEEEec
Confidence 011113446898885321 1356788888999999988754
No 466
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=68.24 E-value=20 Score=29.63 Aligned_cols=100 Identities=16% Similarity=0.203 Sum_probs=55.1
Q ss_pred hcCCCcEEEEccC--CCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371 56 IKGGELFLDYGTG--SGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV 133 (222)
Q Consensus 56 ~~~~~~vLD~G~G--~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 133 (222)
+.++..++-.||. .|..+..+++....++++++.++...+.++. .+.. . .+. .....+. ..
T Consensus 137 ~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~~--~-~~~-~~~~~~~----~~----- 199 (323)
T cd08241 137 LQPGETVLVLGAAGGVGLAAVQLAKALGARVIAAASSEEKLALARA----LGAD--H-VID-YRDPDLR----ER----- 199 (323)
T ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHH----cCCc--e-eee-cCCccHH----HH-----
Confidence 4578899999983 2445555555544679999998877666643 2321 1 111 1111110 00
Q ss_pred hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEec
Q 047371 134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISG 183 (222)
Q Consensus 134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 183 (222)
+........+|+++.... ...+..+.+.++++|.++..+
T Consensus 200 -------i~~~~~~~~~d~v~~~~g----~~~~~~~~~~~~~~g~~v~~~ 238 (323)
T cd08241 200 -------VKALTGGRGVDVVYDPVG----GDVFEASLRSLAWGGRLLVIG 238 (323)
T ss_pred -------HHHHcCCCCcEEEEECcc----HHHHHHHHHhhccCCEEEEEc
Confidence 001113346898886432 134566778888998877643
No 467
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=68.00 E-value=21 Score=30.42 Aligned_cols=101 Identities=17% Similarity=0.197 Sum_probs=56.9
Q ss_pred hcCCCcEEEEccCC-CHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCC-cccccccccccccch
Q 047371 56 IKGGELFLDYGTGS-GILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPD-RTFTASMNERVDGVV 133 (222)
Q Consensus 56 ~~~~~~vLD~G~G~-G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~ 133 (222)
+.++.+|+-.|+|. |..+..+++....++++++-++...+.+++ .++. . +..... ..+. .....
T Consensus 163 ~~~~~~vlV~g~g~vg~~~~~~a~~~G~~vi~~~~~~~~~~~~~~----~g~~--~--~i~~~~~~~~~----~~~~~-- 228 (345)
T cd08260 163 VKPGEWVAVHGCGGVGLSAVMIASALGARVIAVDIDDDKLELARE----LGAV--A--TVNASEVEDVA----AAVRD-- 228 (345)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHH----hCCC--E--EEccccchhHH----HHHHH--
Confidence 45678888888643 344455555544689999998887777643 2321 1 111110 0110 00000
Q ss_pred hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecC
Q 047371 134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGI 184 (222)
Q Consensus 134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 184 (222)
+... .+|+++....- ...+....+.++++|.++..+.
T Consensus 229 ----------~~~~-~~d~vi~~~g~---~~~~~~~~~~l~~~g~~i~~g~ 265 (345)
T cd08260 229 ----------LTGG-GAHVSVDALGI---PETCRNSVASLRKRGRHVQVGL 265 (345)
T ss_pred ----------HhCC-CCCEEEEcCCC---HHHHHHHHHHhhcCCEEEEeCC
Confidence 1123 68999864321 3456778889999999887543
No 468
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=67.89 E-value=65 Score=27.56 Aligned_cols=51 Identities=18% Similarity=0.121 Sum_probs=33.7
Q ss_pred CCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHH
Q 047371 147 TEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYS 197 (222)
Q Consensus 147 ~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~ 197 (222)
...+|+|+.........+.++.+...++++..++.....-...+.+.+.+.
T Consensus 71 ~~~~D~vil~vk~~~~~~~~~~l~~~~~~~~iii~~~nG~~~~~~l~~~~~ 121 (341)
T PRK08229 71 LATADLVLVTVKSAATADAAAALAGHARPGAVVVSFQNGVRNADVLRAALP 121 (341)
T ss_pred ccCCCEEEEEecCcchHHHHHHHHhhCCCCCEEEEeCCCCCcHHHHHHhCC
Confidence 346899998665556677888888888888766554444444455555543
No 469
>PRK06940 short chain dehydrogenase; Provisional
Probab=67.86 E-value=69 Score=26.46 Aligned_cols=82 Identities=11% Similarity=0.084 Sum_probs=44.0
Q ss_pred CcEEEEccCCCHHHHHHHHh--CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccc
Q 047371 60 ELFLDYGTGSGILGIAAIKF--GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLS 137 (222)
Q Consensus 60 ~~vLD~G~G~G~~~~~la~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (222)
+.+|-.|+ |.++..+++. ...+|+.++.++..++.+.+.+...+ .++.+...|..... .....++.
T Consensus 3 k~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~---~~~~~~~~Dv~d~~-----~i~~~~~~-- 70 (275)
T PRK06940 3 EVVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAG---FDVSTQEVDVSSRE-----SVKALAAT-- 70 (275)
T ss_pred CEEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcC---CeEEEEEeecCCHH-----HHHHHHHH--
Confidence 34555564 4566655542 23689999998877766555444332 24555566654331 11111110
Q ss_pred cccccCCCCCCCeeEEEecccc
Q 047371 138 SHEIRGISETEEYDVVIANILL 159 (222)
Q Consensus 138 ~~~~~~~~~~~~~D~v~~~~~~ 159 (222)
....+++|+++.|...
T Consensus 71 ------~~~~g~id~li~nAG~ 86 (275)
T PRK06940 71 ------AQTLGPVTGLVHTAGV 86 (275)
T ss_pred ------HHhcCCCCEEEECCCc
Confidence 0123568999987654
No 470
>PRK08862 short chain dehydrogenase; Provisional
Probab=67.63 E-value=29 Score=27.97 Aligned_cols=47 Identities=17% Similarity=0.255 Sum_probs=34.0
Q ss_pred CCCcEEEEccCCCH---HHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcC
Q 047371 58 GGELFLDYGTGSGI---LGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNN 105 (222)
Q Consensus 58 ~~~~vLD~G~G~G~---~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~ 105 (222)
.++.+|-.|++.|. ++..+++.+ .+|+.++.++..++...+.+...+
T Consensus 4 ~~k~~lVtGas~GIG~aia~~la~~G-~~V~~~~r~~~~l~~~~~~i~~~~ 53 (227)
T PRK08862 4 KSSIILITSAGSVLGRTISCHFARLG-ATLILCDQDQSALKDTYEQCSALT 53 (227)
T ss_pred CCeEEEEECCccHHHHHHHHHHHHCC-CEEEEEcCCHHHHHHHHHHHHhcC
Confidence 46789999988873 555566666 579999999988877766554433
No 471
>PRK06139 short chain dehydrogenase; Provisional
Probab=67.54 E-value=32 Score=29.65 Aligned_cols=59 Identities=15% Similarity=0.139 Sum_probs=38.0
Q ss_pred CCCcEEEEccCCC---HHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcc
Q 047371 58 GGELFLDYGTGSG---ILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRT 120 (222)
Q Consensus 58 ~~~~vLD~G~G~G---~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~ 120 (222)
+++++|-.|++.| .++..+++.+ .+|+.++.++..++...+.+...+. ++.+...|...
T Consensus 6 ~~k~vlITGAs~GIG~aia~~la~~G-~~Vvl~~R~~~~l~~~~~~~~~~g~---~~~~~~~Dv~d 67 (330)
T PRK06139 6 HGAVVVITGASSGIGQATAEAFARRG-ARLVLAARDEEALQAVAEECRALGA---EVLVVPTDVTD 67 (330)
T ss_pred CCCEEEEcCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCC---cEEEEEeeCCC
Confidence 4677888887655 2344455555 5799999999888777666654442 45455555543
No 472
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=67.41 E-value=91 Score=27.70 Aligned_cols=49 Identities=18% Similarity=0.236 Sum_probs=30.9
Q ss_pred CCeeEEEeccccc----------cHHHHHHHHHHcccCCeEEEE-ecCCCCcHHHHHHHH
Q 047371 148 EEYDVVIANILLN----------PLPQLADHIVSYAKPGAVVGI-SGILSEQLPRIINRY 196 (222)
Q Consensus 148 ~~~D~v~~~~~~~----------~~~~~l~~~~~~LkpgG~l~~-~~~~~~~~~~~~~~~ 196 (222)
...|+|+...+.. ......+.+...+++|..++. ++......+++...+
T Consensus 75 ~~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~ 134 (411)
T TIGR03026 75 RDADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPI 134 (411)
T ss_pred hhCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHH
Confidence 3478888754432 245567778888888876655 456666666665433
No 473
>PRK07062 short chain dehydrogenase; Provisional
Probab=67.34 E-value=41 Score=27.36 Aligned_cols=61 Identities=16% Similarity=0.063 Sum_probs=37.7
Q ss_pred CCCcEEEEccCCC---HHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcc
Q 047371 58 GGELFLDYGTGSG---ILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRT 120 (222)
Q Consensus 58 ~~~~vLD~G~G~G---~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~ 120 (222)
.++.+|-.|++.| .++..+++.+ .+|+.++.++..++.+.+.+....-. .++.....|...
T Consensus 7 ~~k~~lItGas~giG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~ 70 (265)
T PRK07062 7 EGRVAVVTGGSSGIGLATVELLLEAG-ASVAICGRDEERLASAEARLREKFPG-ARLLAARCDVLD 70 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC-CeEEEEeCCHHHHHHHHHHHHhhCCC-ceEEEEEecCCC
Confidence 4678888887765 2444455555 57999999988877766555432111 245555555543
No 474
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=67.04 E-value=65 Score=27.95 Aligned_cols=103 Identities=19% Similarity=0.315 Sum_probs=56.5
Q ss_pred hcCCCcEEEEccCC-CHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371 56 IKGGELFLDYGTGS-GILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV 133 (222)
Q Consensus 56 ~~~~~~vLD~G~G~-G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 133 (222)
+.++.+||-.|+|. |..+..+++. +..+++++|.++...+.+++. +.. ........+ ...
T Consensus 174 ~~~g~~vlI~g~g~vg~~~~~~a~~~G~~~vi~~~~~~~~~~~~~~~----g~~-----~v~~~~~~~-------~~~-- 235 (375)
T cd08282 174 VQPGDTVAVFGAGPVGLMAAYSAILRGASRVYVVDHVPERLDLAESI----GAI-----PIDFSDGDP-------VEQ-- 235 (375)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----CCe-----EeccCcccH-------HHH--
Confidence 45788888877653 4455555554 444788999988777766542 211 110000000 000
Q ss_pred hccccccccCCCCCCCeeEEEecccccc--------HHHHHHHHHHcccCCeEEEEecC
Q 047371 134 EYLSSHEIRGISETEEYDVVIANILLNP--------LPQLADHIVSYAKPGAVVGISGI 184 (222)
Q Consensus 134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~--------~~~~l~~~~~~LkpgG~l~~~~~ 184 (222)
+..... +.+|+++....-.. ....+..+.+.++++|.+...+.
T Consensus 236 -------i~~~~~-~~~d~v~d~~g~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~g~ 286 (375)
T cd08282 236 -------ILGLEP-GGVDRAVDCVGYEARDRGGEAQPNLVLNQLIRVTRPGGGIGIVGV 286 (375)
T ss_pred -------HHHhhC-CCCCEEEECCCCcccccccccchHHHHHHHHHHhhcCcEEEEEec
Confidence 001112 45888886432211 12347788889999999876544
No 475
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=67.00 E-value=60 Score=28.93 Aligned_cols=93 Identities=12% Similarity=0.064 Sum_probs=50.0
Q ss_pred cEEEEccCCCHHHHHHHH---hCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhccc
Q 047371 61 LFLDYGTGSGILGIAAIK---FGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLS 137 (222)
Q Consensus 61 ~vLD~G~G~G~~~~~la~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (222)
+|+-+|+ |.++..+++ .....++.+|.++..++.++.. . .+.+..+|..... .....
T Consensus 2 ~viIiG~--G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~---~-----~~~~~~gd~~~~~-----~l~~~----- 61 (453)
T PRK09496 2 KIIIVGA--GQVGYTLAENLSGENNDVTVIDTDEERLRRLQDR---L-----DVRTVVGNGSSPD-----VLREA----- 61 (453)
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhh---c-----CEEEEEeCCCCHH-----HHHHc-----
Confidence 4555665 666665554 2235799999999887766542 1 2345556553321 00111
Q ss_pred cccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEE
Q 047371 138 SHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGI 181 (222)
Q Consensus 138 ~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 181 (222)
....+|.+++...-+.....+....+.+.|.-.++.
T Consensus 62 --------~~~~a~~vi~~~~~~~~n~~~~~~~r~~~~~~~ii~ 97 (453)
T PRK09496 62 --------GAEDADLLIAVTDSDETNMVACQIAKSLFGAPTTIA 97 (453)
T ss_pred --------CCCcCCEEEEecCChHHHHHHHHHHHHhcCCCeEEE
Confidence 345688888754443333344445555544444444
No 476
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=66.87 E-value=22 Score=30.27 Aligned_cols=96 Identities=18% Similarity=0.164 Sum_probs=53.1
Q ss_pred hcCCCcEEEEcc-CC-CHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371 56 IKGGELFLDYGT-GS-GILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV 133 (222)
Q Consensus 56 ~~~~~~vLD~G~-G~-G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 133 (222)
++++.++|-.|+ |. |..+..+++....++++++.+. ..+.++ ..+.. .+......... . .
T Consensus 175 ~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~~-~~~~~~----~~g~~----~~~~~~~~~~~----~--~--- 236 (350)
T cd08274 175 VGAGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGAA-KEEAVR----ALGAD----TVILRDAPLLA----D--A--- 236 (350)
T ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCch-hhHHHH----hcCCe----EEEeCCCccHH----H--H---
Confidence 567889999987 22 4555556665446788887543 444442 22321 11111110000 0 0
Q ss_pred hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEe
Q 047371 134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGIS 182 (222)
Q Consensus 134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 182 (222)
.......+|+++.... ...+..+.+.++++|.++..
T Consensus 237 ---------~~~~~~~~d~vi~~~g----~~~~~~~~~~l~~~G~~v~~ 272 (350)
T cd08274 237 ---------KALGGEPVDVVADVVG----GPLFPDLLRLLRPGGRYVTA 272 (350)
T ss_pred ---------HhhCCCCCcEEEecCC----HHHHHHHHHHhccCCEEEEe
Confidence 0113456999996432 24577788999999998864
No 477
>PRK09072 short chain dehydrogenase; Provisional
Probab=66.78 E-value=68 Score=26.02 Aligned_cols=58 Identities=14% Similarity=0.104 Sum_probs=36.2
Q ss_pred CCCcEEEEccCCC---HHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcc
Q 047371 58 GGELFLDYGTGSG---ILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRT 120 (222)
Q Consensus 58 ~~~~vLD~G~G~G---~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~ 120 (222)
++.++|-.|++.| .++..+++.+ .+|++++.++..++.....+. .+ .++.+...|..+
T Consensus 4 ~~~~vlItG~s~~iG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~-~~---~~~~~~~~D~~d 64 (263)
T PRK09072 4 KDKRVLLTGASGGIGQALAEALAAAG-ARLLLVGRNAEKLEALAARLP-YP---GRHRWVVADLTS 64 (263)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHh-cC---CceEEEEccCCC
Confidence 4667888877654 2444455555 579999999887766655441 11 256666666544
No 478
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=66.69 E-value=62 Score=27.10 Aligned_cols=102 Identities=15% Similarity=0.192 Sum_probs=59.6
Q ss_pred cEEEEccCC-C-HHHHHHHHhC---CCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371 61 LFLDYGTGS-G-ILGIAAIKFG---AAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY 135 (222)
Q Consensus 61 ~vLD~G~G~-G-~~~~~la~~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 135 (222)
+|.=+|||+ | .++..+.+.+ ..++++.|.++..++.+.+. .+. ... .+...
T Consensus 4 ~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~---~g~-----~~~-~~~~e--------------- 59 (272)
T PRK12491 4 QIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDK---YGI-----TIT-TNNNE--------------- 59 (272)
T ss_pred eEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHh---cCc-----EEe-CCcHH---------------
Confidence 466678776 2 2344444433 34799999988776655432 222 111 11100
Q ss_pred cccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEecCCCCcHHHHHHHHH
Q 047371 136 LSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISGILSEQLPRIINRYS 197 (222)
Q Consensus 136 ~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~ 197 (222)
.....|+|+...+-+...++++.+...++++ .++++-...-....+.+.+.
T Consensus 60 ----------~~~~aDiIiLavkP~~~~~vl~~l~~~~~~~-~lvISi~AGi~i~~l~~~l~ 110 (272)
T PRK12491 60 ----------VANSADILILSIKPDLYSSVINQIKDQIKND-VIVVTIAAGKSIKSTENEFD 110 (272)
T ss_pred ----------HHhhCCEEEEEeChHHHHHHHHHHHHhhcCC-cEEEEeCCCCcHHHHHHhcC
Confidence 1124688887554466778888888877765 56666556666777766653
No 479
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=66.68 E-value=40 Score=25.00 Aligned_cols=43 Identities=26% Similarity=0.298 Sum_probs=27.4
Q ss_pred CCCcEEEEccCC-C-HHHHHHHHhCCCEEEEEeCChHHHHHHHHH
Q 047371 58 GGELFLDYGTGS-G-ILGIAAIKFGAAMFVGVDIDPQVIKSAHQN 100 (222)
Q Consensus 58 ~~~~vLD~G~G~-G-~~~~~la~~~~~~v~gvD~s~~~l~~a~~~ 100 (222)
++.+++-+|+|. | ..+..+.+.+..+++.+|.++...+...+.
T Consensus 18 ~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~ 62 (155)
T cd01065 18 KGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAER 62 (155)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHH
Confidence 467899999863 2 223333344446799999998776655443
No 480
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=66.61 E-value=43 Score=28.33 Aligned_cols=116 Identities=18% Similarity=0.156 Sum_probs=61.0
Q ss_pred cEEEEccCC-C-HHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcccc
Q 047371 61 LFLDYGTGS-G-ILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSS 138 (222)
Q Consensus 61 ~vLD~G~G~-G-~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (222)
+|.=+|+|. | .++..+++.+ .+|+.+|.++..++..++... ........... ... ... .....
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g-~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~-~~~-~~~----~~~~~------- 67 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNG-HDVTLWARDPEQAAEINADRE-NPRYLPGIKLP-DNL-RAT----TDLAE------- 67 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCC-CEEEEEECCHHHHHHHHHcCc-ccccCCCCcCC-CCe-EEe----CCHHH-------
Confidence 466777765 3 3444555554 478999999887776654310 00000000000 000 000 00000
Q ss_pred ccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEe--cCCCCcHHHHHHHHHh
Q 047371 139 HEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGIS--GILSEQLPRIINRYSE 198 (222)
Q Consensus 139 ~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~--~~~~~~~~~~~~~~~~ 198 (222)
.....|+|+...+-.....+++.+...++++..++.. ++.......+.+.+.+
T Consensus 68 -------~~~~~D~vi~~v~~~~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~ 122 (325)
T PRK00094 68 -------ALADADLILVAVPSQALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEE 122 (325)
T ss_pred -------HHhCCCEEEEeCCHHHHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHH
Confidence 1235799998766666777888888888888776643 5554444444444444
No 481
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=66.48 E-value=16 Score=30.61 Aligned_cols=99 Identities=18% Similarity=0.225 Sum_probs=54.9
Q ss_pred hcCCCcEEEEccCC--CHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371 56 IKGGELFLDYGTGS--GILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV 133 (222)
Q Consensus 56 ~~~~~~vLD~G~G~--G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 133 (222)
+.++.+++-.|++. |..+..++.....+++.++.++...+.++. .+.. ..+...+. ... ..+
T Consensus 164 ~~~~~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~~~~~~~~~~----~~~~---~~~~~~~~-~~~-------~~~- 227 (342)
T cd08266 164 LRPGETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSEDKLERAKE----LGAD---YVIDYRKE-DFV-------REV- 227 (342)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCC---eEEecCCh-HHH-------HHH-
Confidence 45678899888764 344445555444678999988877666533 1211 11111110 000 000
Q ss_pred hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEe
Q 047371 134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGIS 182 (222)
Q Consensus 134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 182 (222)
........+|+++.+... ..+..+.+.++++|.++..
T Consensus 228 --------~~~~~~~~~d~~i~~~g~----~~~~~~~~~l~~~G~~v~~ 264 (342)
T cd08266 228 --------RELTGKRGVDVVVEHVGA----ATWEKSLKSLARGGRLVTC 264 (342)
T ss_pred --------HHHhCCCCCcEEEECCcH----HHHHHHHHHhhcCCEEEEE
Confidence 000123468999876543 3456677888999998864
No 482
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=66.28 E-value=30 Score=31.61 Aligned_cols=39 Identities=26% Similarity=0.181 Sum_probs=25.4
Q ss_pred cCCCcEEEEccCCCHHH-HHHHHhCCCEEEEEeCChHHHH
Q 047371 57 KGGELFLDYGTGSGILG-IAAIKFGAAMFVGVDIDPQVIK 95 (222)
Q Consensus 57 ~~~~~vLD~G~G~G~~~-~~la~~~~~~v~gvD~s~~~l~ 95 (222)
.++++|+-+|.|.-..+ ..++.....++++.|..+..++
T Consensus 10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~ 49 (488)
T PRK03369 10 LPGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALR 49 (488)
T ss_pred cCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHH
Confidence 36789999998874433 3333333368999998765433
No 483
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=65.98 E-value=39 Score=29.44 Aligned_cols=33 Identities=24% Similarity=0.266 Sum_probs=26.6
Q ss_pred CCCcEEEEccCC-CH-HHHHHHHhCCCEEEEEeCC
Q 047371 58 GGELFLDYGTGS-GI-LGIAAIKFGAAMFVGVDID 90 (222)
Q Consensus 58 ~~~~vLD~G~G~-G~-~~~~la~~~~~~v~gvD~s 90 (222)
...+|+-+|||. |. ++..|+..|..+++.+|-+
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 467899999995 54 5667778888899999986
No 484
>PRK08265 short chain dehydrogenase; Provisional
Probab=65.82 E-value=72 Score=25.96 Aligned_cols=56 Identities=16% Similarity=0.142 Sum_probs=33.6
Q ss_pred CCCcEEEEccCCC---HHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcc
Q 047371 58 GGELFLDYGTGSG---ILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRT 120 (222)
Q Consensus 58 ~~~~vLD~G~G~G---~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~ 120 (222)
.++++|-.|++.| .++..+++.+ .+|+.++.++..++...+.. + .++.+...|...
T Consensus 5 ~~k~vlItGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~---~---~~~~~~~~Dl~~ 63 (261)
T PRK08265 5 AGKVAIVTGGATLIGAAVARALVAAG-ARVAIVDIDADNGAAVAASL---G---ERARFIATDITD 63 (261)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHh---C---CeeEEEEecCCC
Confidence 4678888886554 2344455555 58999999876555443322 1 245566666644
No 485
>KOG2015 consensus NEDD8-activating complex, catalytic component UBA3 [Posttranslational modification, protein turnover, chaperones]
Probab=65.58 E-value=65 Score=28.15 Aligned_cols=33 Identities=24% Similarity=0.213 Sum_probs=23.8
Q ss_pred CCcEEEEccCC-CH-HHHHHHHhCCCEEEEEeCCh
Q 047371 59 GELFLDYGTGS-GI-LGIAAIKFGAAMFVGVDIDP 91 (222)
Q Consensus 59 ~~~vLD~G~G~-G~-~~~~la~~~~~~v~gvD~s~ 91 (222)
..+||-+|+|. |. +...++-.++.++..+|.+-
T Consensus 40 ~~kiLviGAGGLGCElLKnLal~gF~~~~viDmDT 74 (422)
T KOG2015|consen 40 DCKILVIGAGGLGCELLKNLALSGFRQLHVIDMDT 74 (422)
T ss_pred hCcEEEEccCcccHHHHHhHHhhccceeEEEeecc
Confidence 47799999986 53 66667767777777777643
No 486
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=65.51 E-value=26 Score=29.59 Aligned_cols=100 Identities=19% Similarity=0.220 Sum_probs=56.8
Q ss_pred hcCCCcEEEEccCC-CHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371 56 IKGGELFLDYGTGS-GILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV 133 (222)
Q Consensus 56 ~~~~~~vLD~G~G~-G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 133 (222)
++++.+||-.|+|. |..+..+++. ...++++++-++...+.+++ .+.. .+ +...+...+. ..+
T Consensus 160 ~~~g~~vlV~g~g~vG~~~~~la~~~~g~~v~~~~~~~~~~~~~~~----~g~~--~v-~~~~~~~~~~-------~~v- 224 (338)
T PRK09422 160 IKPGQWIAIYGAGGLGNLALQYAKNVFNAKVIAVDINDDKLALAKE----VGAD--LT-INSKRVEDVA-------KII- 224 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH----cCCc--EE-ecccccccHH-------HHH-
Confidence 56788999988643 4555566664 34689999999988887743 2321 11 1110000100 000
Q ss_pred hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEec
Q 047371 134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISG 183 (222)
Q Consensus 134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 183 (222)
.. ..+.+|+++.... -...+..+.+.++++|.++..+
T Consensus 225 --------~~--~~~~~d~vi~~~~---~~~~~~~~~~~l~~~G~~v~~g 261 (338)
T PRK09422 225 --------QE--KTGGAHAAVVTAV---AKAAFNQAVDAVRAGGRVVAVG 261 (338)
T ss_pred --------HH--hcCCCcEEEEeCC---CHHHHHHHHHhccCCCEEEEEe
Confidence 00 1124775543322 2456788889999999988643
No 487
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=65.42 E-value=31 Score=28.62 Aligned_cols=101 Identities=19% Similarity=0.206 Sum_probs=53.6
Q ss_pred hcCCCcEEEEccCC-CHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371 56 IKGGELFLDYGTGS-GILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV 133 (222)
Q Consensus 56 ~~~~~~vLD~G~G~-G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 133 (222)
++++.+++-.|+|. |..+..+++. +...++++.-++...+.+++ .+.. . +.......+. ..
T Consensus 127 ~~~~~~vlI~g~g~vg~~~~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~--~--~~~~~~~~~~-------~~-- 189 (312)
T cd08269 127 IRAGKTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRPARLALARE----LGAT--E--VVTDDSEAIV-------ER-- 189 (312)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCCc--e--EecCCCcCHH-------HH--
Confidence 45788888886432 3334444444 43338888888776664432 2321 1 1111111110 00
Q ss_pred hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEec
Q 047371 134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISG 183 (222)
Q Consensus 134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 183 (222)
+..+.+...+|+++..... ...+..+.+.|+++|.++..+
T Consensus 190 -------l~~~~~~~~vd~vld~~g~---~~~~~~~~~~l~~~g~~~~~g 229 (312)
T cd08269 190 -------VRELTGGAGADVVIEAVGH---QWPLDLAGELVAERGRLVIFG 229 (312)
T ss_pred -------HHHHcCCCCCCEEEECCCC---HHHHHHHHHHhccCCEEEEEc
Confidence 1111234568999864321 346677888899999988654
No 488
>PRK07102 short chain dehydrogenase; Provisional
Probab=65.38 E-value=41 Score=26.94 Aligned_cols=58 Identities=12% Similarity=0.011 Sum_probs=34.2
Q ss_pred CcEEEEccCCCHHHHH----HHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCccc
Q 047371 60 ELFLDYGTGSGILGIA----AIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTF 121 (222)
Q Consensus 60 ~~vLD~G~G~G~~~~~----la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~ 121 (222)
++++-.|+. |.++.. +++.+ .+|++++.++...+...+.+...+- .++.+...|....
T Consensus 2 ~~vlItGas-~giG~~~a~~l~~~G-~~Vi~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~ 63 (243)
T PRK07102 2 KKILIIGAT-SDIARACARRYAAAG-ARLYLAARDVERLERLADDLRARGA--VAVSTHELDILDT 63 (243)
T ss_pred cEEEEEcCC-cHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHhcC--CeEEEEecCCCCh
Confidence 457777754 444444 44445 5799999998776655444433221 3666777766543
No 489
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=65.21 E-value=41 Score=25.60 Aligned_cols=102 Identities=19% Similarity=0.175 Sum_probs=55.8
Q ss_pred cEEEEccCC-C-HHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhcccc
Q 047371 61 LFLDYGTGS-G-ILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEYLSS 138 (222)
Q Consensus 61 ~vLD~G~G~-G-~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (222)
+|-=+|+|. | .++..|++.+ -.|++.|.++...+...+. + +... .+...+
T Consensus 3 ~Ig~IGlG~mG~~~a~~L~~~g-~~v~~~d~~~~~~~~~~~~----g-----~~~~-~s~~e~----------------- 54 (163)
T PF03446_consen 3 KIGFIGLGNMGSAMARNLAKAG-YEVTVYDRSPEKAEALAEA----G-----AEVA-DSPAEA----------------- 54 (163)
T ss_dssp EEEEE--SHHHHHHHHHHHHTT-TEEEEEESSHHHHHHHHHT----T-----EEEE-SSHHHH-----------------
T ss_pred EEEEEchHHHHHHHHHHHHhcC-CeEEeeccchhhhhhhHHh----h-----hhhh-hhhhhH-----------------
Confidence 344566654 2 2444455555 4799999999777666543 2 1111 111111
Q ss_pred ccccCCCCCCCeeEEEecccc-ccHHHHHHH--HHHcccCCeEEEE-ecCCCCcHHHHHHHHHh
Q 047371 139 HEIRGISETEEYDVVIANILL-NPLPQLADH--IVSYAKPGAVVGI-SGILSEQLPRIINRYSE 198 (222)
Q Consensus 139 ~~~~~~~~~~~~D~v~~~~~~-~~~~~~l~~--~~~~LkpgG~l~~-~~~~~~~~~~~~~~~~~ 198 (222)
....|+|+...+- ....+++.. +...|++|..++- ++.......++.+.+..
T Consensus 55 --------~~~~dvvi~~v~~~~~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~ 110 (163)
T PF03446_consen 55 --------AEQADVVILCVPDDDAVEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAA 110 (163)
T ss_dssp --------HHHBSEEEE-SSSHHHHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHH
T ss_pred --------hhcccceEeecccchhhhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhh
Confidence 1235888875544 335566766 8888888877664 45556667777777655
No 490
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=64.93 E-value=47 Score=27.07 Aligned_cols=59 Identities=19% Similarity=0.126 Sum_probs=38.6
Q ss_pred CCCcEEEEccCCC---HHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcc
Q 047371 58 GGELFLDYGTGSG---ILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRT 120 (222)
Q Consensus 58 ~~~~vLD~G~G~G---~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~ 120 (222)
.++++|-.|++.| .++..+++.+ .+++.++.++..++.+.......+ .++.+...|...
T Consensus 9 ~~k~~lItGa~~~iG~~ia~~l~~~G-~~vv~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Dl~~ 70 (265)
T PRK07097 9 KGKIALITGASYGIGFAIAKAYAKAG-ATIVFNDINQELVDKGLAAYRELG---IEAHGYVCDVTD 70 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC-CeEEEEeCCHHHHHHHHHHHHhcC---CceEEEEcCCCC
Confidence 4678888888775 2444555565 578888998887777666554433 245566666543
No 491
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=64.92 E-value=32 Score=31.48 Aligned_cols=88 Identities=24% Similarity=0.239 Sum_probs=53.2
Q ss_pred CCCcEEEEccCC-CHH-HHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccchhc
Q 047371 58 GGELFLDYGTGS-GIL-GIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVVEY 135 (222)
Q Consensus 58 ~~~~vLD~G~G~-G~~-~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 135 (222)
.|++|+-+|+|. |.- +..+...+ .+|+++|.++.....+.. .+.. . .+.+.
T Consensus 253 aGKtVgVIG~G~IGr~vA~rL~a~G-a~ViV~e~dp~~a~~A~~----~G~~-----~--~~lee--------------- 305 (476)
T PTZ00075 253 AGKTVVVCGYGDVGKGCAQALRGFG-ARVVVTEIDPICALQAAM----EGYQ-----V--VTLED--------------- 305 (476)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCCchhHHHHHh----cCce-----e--ccHHH---------------
Confidence 588999999997 332 22233345 589999998865433322 2321 1 11111
Q ss_pred cccccccCCCCCCCeeEEEeccccccHHHHH-HHHHHcccCCeEEEEecCC
Q 047371 136 LSSHEIRGISETEEYDVVIANILLNPLPQLA-DHIVSYAKPGAVVGISGIL 185 (222)
Q Consensus 136 ~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l-~~~~~~LkpgG~l~~~~~~ 185 (222)
-...+|+|+.... ...++ ......+|||++++-.+..
T Consensus 306 ----------ll~~ADIVI~atG---t~~iI~~e~~~~MKpGAiLINvGr~ 343 (476)
T PTZ00075 306 ----------VVETADIFVTATG---NKDIITLEHMRRMKNNAIVGNIGHF 343 (476)
T ss_pred ----------HHhcCCEEEECCC---cccccCHHHHhccCCCcEEEEcCCC
Confidence 1235799997643 23344 4778889999999886555
No 492
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=64.92 E-value=35 Score=29.14 Aligned_cols=38 Identities=21% Similarity=0.184 Sum_probs=25.9
Q ss_pred CCCcEEEEccCC-CHHHH-HHHHhCCCEEEEEeCChHHHH
Q 047371 58 GGELFLDYGTGS-GILGI-AAIKFGAAMFVGVDIDPQVIK 95 (222)
Q Consensus 58 ~~~~vLD~G~G~-G~~~~-~la~~~~~~v~gvD~s~~~l~ 95 (222)
++++|+-+|+|. |.... .+...+..+++.++.++....
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~ 216 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAE 216 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHH
Confidence 588999999875 43333 333345678999999886543
No 493
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=64.74 E-value=86 Score=26.47 Aligned_cols=100 Identities=25% Similarity=0.369 Sum_probs=54.4
Q ss_pred hcCCCcEEEEccCC-CHHHHHHHHh-CCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371 56 IKGGELFLDYGTGS-GILGIAAIKF-GAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV 133 (222)
Q Consensus 56 ~~~~~~vLD~G~G~-G~~~~~la~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 133 (222)
..++.+||-.|+|. |..+..+++. +..++++++.++...+.+++ .+.. .+. .+...+. ..+
T Consensus 165 ~~~~~~vlI~g~g~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~----~g~~----~~~-~~~~~~~----~~l---- 227 (344)
T cd08284 165 VRPGDTVAVIGCGPVGLCAVLSAQVLGAARVFAVDPVPERLERAAA----LGAE----PIN-FEDAEPV----ERV---- 227 (344)
T ss_pred CccCCEEEEECCcHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHH----hCCe----EEe-cCCcCHH----HHH----
Confidence 45678888876542 3344445554 43478999887766655543 2321 111 1111110 000
Q ss_pred hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEec
Q 047371 134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISG 183 (222)
Q Consensus 134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 183 (222)
..+.+.+.+|+++....- ...+..+.+.++++|.++..+
T Consensus 228 --------~~~~~~~~~dvvid~~~~---~~~~~~~~~~l~~~g~~v~~g 266 (344)
T cd08284 228 --------REATEGRGADVVLEAVGG---AAALDLAFDLVRPGGVISSVG 266 (344)
T ss_pred --------HHHhCCCCCCEEEECCCC---HHHHHHHHHhcccCCEEEEEC
Confidence 011134568998864321 346777888899999988754
No 494
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=64.50 E-value=73 Score=27.17 Aligned_cols=95 Identities=15% Similarity=0.111 Sum_probs=54.3
Q ss_pred cEEEEccCC-CH-HHHHHHHhCCCEEEEEeCChHHHHHHHHHH---H-hcCCCC-CceeEEecCCcccccccccccccch
Q 047371 61 LFLDYGTGS-GI-LGIAAIKFGAAMFVGVDIDPQVIKSAHQNA---A-LNNIGP-KKIKLHLVPDRTFTASMNERVDGVV 133 (222)
Q Consensus 61 ~vLD~G~G~-G~-~~~~la~~~~~~v~gvD~s~~~l~~a~~~~---~-~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~ 133 (222)
+|.-+|+|. |. ++..+++.+ .+|+.++.+++.++..++.- . ..+... .++... .+.. ..
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g-~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~-~~~~-----------~~- 67 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKK-ISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVK-SAID-----------EV- 67 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCC-CeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEe-CCHH-----------HH-
Confidence 467788886 43 555566665 57888898887666554421 0 000000 011111 0000 00
Q ss_pred hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHH-cccCCeEEEE
Q 047371 134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVS-YAKPGAVVGI 181 (222)
Q Consensus 134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~-~LkpgG~l~~ 181 (222)
..+.+|+++..-+-..+..+++.+.. .++++..+++
T Consensus 68 ------------~~~~~Dliiiavks~~~~~~l~~l~~~~l~~~~~vv~ 104 (326)
T PRK14620 68 ------------LSDNATCIILAVPTQQLRTICQQLQDCHLKKNTPILI 104 (326)
T ss_pred ------------HhCCCCEEEEEeCHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 12467999987666668888888887 8888876655
No 495
>PRK08589 short chain dehydrogenase; Validated
Probab=64.37 E-value=44 Score=27.48 Aligned_cols=58 Identities=24% Similarity=0.253 Sum_probs=34.1
Q ss_pred CCCcEEEEccCCCH---HHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcc
Q 047371 58 GGELFLDYGTGSGI---LGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRT 120 (222)
Q Consensus 58 ~~~~vLD~G~G~G~---~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~ 120 (222)
+++++|-.|++.|. ++..+++.+ .+|+.++.+ ..++...+.+...+ .++.....|...
T Consensus 5 ~~k~vlItGas~gIG~aia~~l~~~G-~~vi~~~r~-~~~~~~~~~~~~~~---~~~~~~~~Dl~~ 65 (272)
T PRK08589 5 ENKVAVITGASTGIGQASAIALAQEG-AYVLAVDIA-EAVSETVDKIKSNG---GKAKAYHVDISD 65 (272)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCc-HHHHHHHHHHHhcC---CeEEEEEeecCC
Confidence 46788888876652 444455555 689999988 44444444443322 245555666543
No 496
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=64.04 E-value=40 Score=27.05 Aligned_cols=57 Identities=11% Similarity=0.098 Sum_probs=35.1
Q ss_pred CCCcEEEEccCCCHHHHH----HHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCC
Q 047371 58 GGELFLDYGTGSGILGIA----AIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPD 118 (222)
Q Consensus 58 ~~~~vLD~G~G~G~~~~~----la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~ 118 (222)
+++++|-.|+. |.++.. +++.+ .+|++++.++..++.....+...+. .++.+...|.
T Consensus 11 ~~k~vlItG~~-g~iG~~la~~l~~~G-~~Vi~~~r~~~~~~~~~~~l~~~~~--~~~~~~~~d~ 71 (247)
T PRK08945 11 KDRIILVTGAG-DGIGREAALTYARHG-ATVILLGRTEEKLEAVYDEIEAAGG--PQPAIIPLDL 71 (247)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCC-CcEEEEeCCHHHHHHHHHHHHhcCC--CCceEEEecc
Confidence 57888888854 444443 44444 5899999998777666555544332 2444555554
No 497
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=64.01 E-value=82 Score=25.98 Aligned_cols=97 Identities=15% Similarity=0.265 Sum_probs=57.7
Q ss_pred hcCCCcEEEEccC--CCHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEecCCcccccccccccccch
Q 047371 56 IKGGELFLDYGTG--SGILGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHLVPDRTFTASMNERVDGVV 133 (222)
Q Consensus 56 ~~~~~~vLD~G~G--~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 133 (222)
+.++.+||-.|++ .|..+..+++....+++++..++...+.++. .+.. .+ +. ....+. ..
T Consensus 140 ~~~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~~--~~-~~--~~~~~~-------~~-- 201 (320)
T cd08243 140 LQPGDTLLIRGGTSSVGLAALKLAKALGATVTATTRSPERAALLKE----LGAD--EV-VI--DDGAIA-------EQ-- 201 (320)
T ss_pred CCCCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh----cCCc--EE-Ee--cCccHH-------HH--
Confidence 4578899888863 3566667776644679999988877666532 2332 11 11 111110 00
Q ss_pred hccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEec
Q 047371 134 EYLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGISG 183 (222)
Q Consensus 134 ~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 183 (222)
+..+ .+.+|+++.... ...+..+.+.|+++|.++..+
T Consensus 202 -------i~~~--~~~~d~vl~~~~----~~~~~~~~~~l~~~g~~v~~g 238 (320)
T cd08243 202 -------LRAA--PGGFDKVLELVG----TATLKDSLRHLRPGGIVCMTG 238 (320)
T ss_pred -------HHHh--CCCceEEEECCC----hHHHHHHHHHhccCCEEEEEc
Confidence 1111 246899985432 245777888999999988654
No 498
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=63.15 E-value=72 Score=27.76 Aligned_cols=114 Identities=15% Similarity=0.147 Sum_probs=65.7
Q ss_pred cEEEEccCC-CH-HHHHHHHhCCCEEEEEeCChHHHHHHHHHHHhcCCCCCceeEEe----cCCcccccccccccccchh
Q 047371 61 LFLDYGTGS-GI-LGIAAIKFGAAMFVGVDIDPQVIKSAHQNAALNNIGPKKIKLHL----VPDRTFTASMNERVDGVVE 134 (222)
Q Consensus 61 ~vLD~G~G~-G~-~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~----~~~~~~~~~~~~~~~~~~~ 134 (222)
+|--+|+|+ |. ++..+++++ .+|...-.+++.++..... .. |.++.. .+...... ++..
T Consensus 3 kI~ViGaGswGTALA~~la~ng-~~V~lw~r~~~~~~~i~~~-~~------N~~yLp~i~lp~~l~at~----Dl~~--- 67 (329)
T COG0240 3 KIAVIGAGSWGTALAKVLARNG-HEVRLWGRDEEIVAEINET-RE------NPKYLPGILLPPNLKATT----DLAE--- 67 (329)
T ss_pred eEEEEcCChHHHHHHHHHHhcC-CeeEEEecCHHHHHHHHhc-Cc------CccccCCccCCccccccc----CHHH---
Confidence 466677776 53 555666665 4677777777777765443 11 111111 00000100 0001
Q ss_pred ccccccccCCCCCCCeeEEEeccccccHHHHHHHHHHcccCCeEEEEe--cCCCCcHHHHHHHHHhhh
Q 047371 135 YLSSHEIRGISETEEYDVVIANILLNPLPQLADHIVSYAKPGAVVGIS--GILSEQLPRIINRYSEFL 200 (222)
Q Consensus 135 ~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~LkpgG~l~~~--~~~~~~~~~~~~~~~~~~ 200 (222)
-...+|+|+...|-+.+.+.++++...++++-.++.. ++-.....-+.+.+++.+
T Consensus 68 -----------a~~~ad~iv~avPs~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l 124 (329)
T COG0240 68 -----------ALDGADIIVIAVPSQALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEEL 124 (329)
T ss_pred -----------HHhcCCEEEEECChHHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHc
Confidence 1234899999998888999999998788887776653 555555555555555553
No 499
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=62.77 E-value=11 Score=31.42 Aligned_cols=42 Identities=17% Similarity=0.234 Sum_probs=30.1
Q ss_pred EEeCCCcccccCCcchhHHHHHHHHhhhcCCCcEEEEccCCC
Q 047371 29 IILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGSG 70 (222)
Q Consensus 29 ~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~vLD~G~G~G 70 (222)
+.++|...|..+.+.....+.+...+.+..|..++|+|+++.
T Consensus 7 lN~t~dsf~~~~~~~~~~~~~~~a~~~~~~GAdiIDvG~~st 48 (258)
T cd00423 7 LNVTPDSFSDGGKFLSLDKALEHARRMVEEGADIIDIGGEST 48 (258)
T ss_pred ecCCCCchhhccccCCHHHHHHHHHHHHHCCCCEEEECCCcC
Confidence 445555555544545666666666777889999999999987
No 500
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=62.41 E-value=13 Score=29.85 Aligned_cols=41 Identities=15% Similarity=0.221 Sum_probs=27.6
Q ss_pred EEeCCCcccccCCcchhHHHHHHHHhhhcCCCcEEEEccCC
Q 047371 29 IILNPGLAFGTGEHATTKLCLLLLQSLIKGGELFLDYGTGS 69 (222)
Q Consensus 29 ~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~vLD~G~G~ 69 (222)
+.+.|...+.-+.............+.+..|..++|+|+++
T Consensus 2 lNvt~dSf~~g~~~~~~~~a~~~a~~~~~~GAdiIDIg~~s 42 (210)
T PF00809_consen 2 LNVTPDSFSDGGRKFSEDEAVKRAREQVEAGADIIDIGAES 42 (210)
T ss_dssp EEESCCTTTTTTCHHHHHHHHHHHHHHHHTT-SEEEEESST
T ss_pred EEecCCCCcccCcccCHHHHHHHHHHHHHhcCCEEEecccc
Confidence 45666666655555555555555666778899999999988
Done!