BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047377
(160 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3QEL|A Chain A, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With
Ifenprodil
pdb|3QEL|C Chain C, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With
Ifenprodil
pdb|3QEM|A Chain A, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With Ro
25-6981
pdb|3QEM|C Chain C, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With Ro
25-6981
Length = 383
Score = 30.0 bits (66), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 60 DEEGKVLWAKVEGILEGNEGRKVKRVKEWMDEI 92
D EG+ K+E +LEG E + KR E +D++
Sbjct: 148 DHEGRAAQKKLETLLEGKESKSKKRNYENLDQL 180
>pdb|3QEK|A Chain A, Crystal Structure Of Amino Terminal Domain Of The Nmda
Receptor Subunit Glun1
pdb|3QEK|B Chain B, Crystal Structure Of Amino Terminal Domain Of The Nmda
Receptor Subunit Glun1
Length = 384
Score = 30.0 bits (66), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 60 DEEGKVLWAKVEGILEGNEGRKVKRVKEWMDEI 92
D EG+ K+E +LEG E + KR E +D++
Sbjct: 149 DHEGRAAQKKLETLLEGKESKSKKRNYENLDQL 181
>pdb|4AAA|A Chain A, Crystal Structure Of The Human Cdkl2 Kinase Domain
pdb|4BBM|A Chain A, Crystal Structure Of The Human Cdkl2 Kinase Domain With
Bound Tcs 2312
pdb|4BBM|B Chain B, Crystal Structure Of The Human Cdkl2 Kinase Domain With
Bound Tcs 2312
Length = 331
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 109 IAIACLHKDPSKRPSMVDIVH 129
+A CLH DP KRP +++H
Sbjct: 286 LAKKCLHIDPDKRPFCAELLH 306
>pdb|4GS6|A Chain A, Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxozeaenol
Length = 315
Score = 27.3 bits (59), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/16 (68%), Positives = 13/16 (81%)
Query: 14 CLHKDPSKRPSMVDIV 29
C KDPS+RPSM +IV
Sbjct: 241 CWSKDPSQRPSMEEIV 256
Score = 27.3 bits (59), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/16 (68%), Positives = 13/16 (81%)
Query: 113 CLHKDPSKRPSMVDIV 128
C KDPS+RPSM +IV
Sbjct: 241 CWSKDPSQRPSMEEIV 256
>pdb|2EVA|A Chain A, Structural Basis For The Interaction Of Tak1 Kinase With
Its Activating Protein Tab1
pdb|2YIY|A Chain A, Crystal Structure Of Compound 8 Bound To Tak1-Tab
Length = 307
Score = 27.3 bits (59), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/16 (68%), Positives = 13/16 (81%)
Query: 14 CLHKDPSKRPSMVDIV 29
C KDPS+RPSM +IV
Sbjct: 240 CWSKDPSQRPSMEEIV 255
Score = 27.3 bits (59), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/16 (68%), Positives = 13/16 (81%)
Query: 113 CLHKDPSKRPSMVDIV 128
C KDPS+RPSM +IV
Sbjct: 240 CWSKDPSQRPSMEEIV 255
>pdb|3AUF|A Chain A, Crystal Structure Of Glycinamide Ribonucleotide
Transformylase 1 From Symbiobacterium Toebii
Length = 229
Score = 26.9 bits (58), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 6/56 (10%)
Query: 69 KVEGILEG-NEGRKVKRVKEWMDEILLQDSISMEGVMRAMGIAIACLHKDPSKRPS 123
++ IL+G EGR RV +++ D G+ RA + LH DP+ PS
Sbjct: 35 NLQAILDGCREGRIPGRVA-----VVISDRADAYGLERARRAGVDALHMDPAAYPS 85
>pdb|4AGU|A Chain A, Crystal Structure Of The Human Cdkl1 Kinase Domain
pdb|4AGU|B Chain B, Crystal Structure Of The Human Cdkl1 Kinase Domain
pdb|4AGU|C Chain C, Crystal Structure Of The Human Cdkl1 Kinase Domain
Length = 311
Score = 26.6 bits (57), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 106 AMGIAIACLHKDPSKRPSMVDIVH 129
A+G+ CLH DP++R + ++H
Sbjct: 261 ALGLLKGCLHMDPTERLTCEQLLH 284
>pdb|3S95|A Chain A, Crystal Structure Of The Human Limk1 Kinase Domain In
Complex With Staurosporine
pdb|3S95|B Chain B, Crystal Structure Of The Human Limk1 Kinase Domain In
Complex With Staurosporine
Length = 310
Score = 26.2 bits (56), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 109 IAIACLHKDPSKRPSMVDIVH 129
I + C DP KRPS V + H
Sbjct: 255 ITVRCCDLDPEKRPSFVKLEH 275
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,291,005
Number of Sequences: 62578
Number of extensions: 95900
Number of successful extensions: 362
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 350
Number of HSP's gapped (non-prelim): 13
length of query: 160
length of database: 14,973,337
effective HSP length: 91
effective length of query: 69
effective length of database: 9,278,739
effective search space: 640232991
effective search space used: 640232991
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)