Query 047378
Match_columns 87
No_of_seqs 109 out of 1232
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 10:32:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047378.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047378hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0569 Permease of the major 99.8 1.6E-17 3.4E-22 108.5 10.1 86 1-86 385-470 (485)
2 PF00083 Sugar_tr: Sugar (and 99.6 3.5E-17 7.5E-22 105.3 -1.7 85 1-85 366-451 (451)
3 KOG0254 Predicted transporter 99.6 2E-14 4.3E-19 94.6 9.1 86 1-86 412-499 (513)
4 TIGR00887 2A0109 phosphate:H+ 99.5 4.5E-14 9.8E-19 92.5 7.6 81 2-83 410-501 (502)
5 PRK10077 xylE D-xylose transpo 99.5 7.6E-13 1.6E-17 85.8 9.5 85 2-86 382-473 (479)
6 KOG0252 Inorganic phosphate tr 99.3 5.6E-12 1.2E-16 82.1 4.0 80 3-83 425-510 (538)
7 KOG0253 Synaptic vesicle trans 99.2 9.9E-12 2.1E-16 79.7 3.6 75 3-78 453-527 (528)
8 TIGR01299 synapt_SV2 synaptic 99.1 4.1E-10 8.8E-15 77.4 7.6 74 4-78 668-741 (742)
9 TIGR00898 2A0119 cation transp 99.0 9.8E-10 2.1E-14 72.0 6.3 75 4-80 430-504 (505)
10 TIGR00879 SP MFS transporter, 99.0 1.5E-09 3.2E-14 69.6 6.9 79 2-80 401-480 (481)
11 PRK10489 enterobactin exporter 98.8 1E-08 2.3E-13 65.8 6.0 81 5-85 333-414 (417)
12 TIGR00880 2_A_01_02 Multidrug 98.7 1.8E-07 3.8E-12 51.0 6.8 71 3-73 70-141 (141)
13 PRK10642 proline/glycine betai 98.7 2.6E-07 5.7E-12 60.8 8.6 73 5-78 363-437 (490)
14 KOG0255 Synaptic vesicle trans 98.6 7.6E-07 1.7E-11 58.9 8.3 78 5-82 427-504 (521)
15 TIGR00903 2A0129 major facilit 98.5 7.8E-07 1.7E-11 57.0 8.0 69 6-74 100-169 (368)
16 TIGR00893 2A0114 d-galactonate 98.5 5.6E-07 1.2E-11 56.3 6.7 73 3-75 101-174 (399)
17 TIGR00887 2A0109 phosphate:H+ 98.5 2.6E-06 5.6E-11 56.3 8.9 70 3-73 134-227 (502)
18 PRK03545 putative arabinose tr 98.4 2E-06 4.4E-11 54.9 8.1 71 4-74 117-188 (390)
19 TIGR02332 HpaX 4-hydroxyphenyl 98.4 2E-06 4.2E-11 55.7 7.9 73 3-75 115-194 (412)
20 TIGR00710 efflux_Bcr_CflA drug 98.4 1.6E-06 3.5E-11 54.7 7.3 72 5-76 114-186 (385)
21 COG2814 AraJ Arabinose efflux 98.4 2.1E-06 4.5E-11 55.7 7.5 68 4-71 121-189 (394)
22 TIGR00711 efflux_EmrB drug res 98.4 3.1E-07 6.6E-12 59.8 3.5 73 3-75 109-182 (485)
23 PRK10213 nepI ribonucleoside t 98.4 2.8E-06 6.1E-11 54.6 7.9 73 3-75 127-200 (394)
24 PRK15403 multidrug efflux syst 98.4 3.1E-06 6.8E-11 54.8 8.0 72 4-75 124-196 (413)
25 PRK10473 multidrug efflux syst 98.4 1.9E-06 4.1E-11 55.0 6.5 72 4-75 111-183 (392)
26 PRK11102 bicyclomycin/multidru 98.4 3E-06 6.5E-11 53.6 7.4 71 4-74 99-170 (377)
27 TIGR00894 2A0114euk Na(+)-depe 98.3 2E-06 4.3E-11 56.1 6.0 71 3-73 150-222 (465)
28 PRK11663 regulatory protein Uh 98.3 2.5E-06 5.5E-11 55.4 6.2 72 6-77 359-431 (434)
29 TIGR00895 2A0115 benzoate tran 98.3 1.3E-06 2.8E-11 55.0 4.5 72 3-74 124-196 (398)
30 TIGR00889 2A0110 nucleoside tr 98.3 3.6E-06 7.8E-11 54.6 6.6 73 4-76 328-408 (418)
31 PRK10054 putative transporter; 98.3 7.8E-06 1.7E-10 52.6 7.5 71 4-74 116-186 (395)
32 PRK15402 multidrug efflux syst 98.3 7.2E-06 1.6E-10 52.6 7.2 73 3-75 120-193 (406)
33 PRK11663 regulatory protein Uh 98.2 9.5E-06 2.1E-10 52.7 7.5 70 4-73 131-201 (434)
34 PRK10091 MFS transport protein 98.2 8.8E-06 1.9E-10 52.0 7.2 71 5-75 112-183 (382)
35 PRK14995 methyl viologen resis 98.2 4.1E-06 8.8E-11 55.4 5.6 69 7-75 117-187 (495)
36 TIGR00903 2A0129 major facilit 98.2 3.4E-06 7.4E-11 54.0 5.1 63 4-67 300-362 (368)
37 TIGR00901 2A0125 AmpG-related 98.2 9.8E-06 2.1E-10 51.1 7.1 70 5-74 104-182 (356)
38 PF07690 MFS_1: Major Facilita 98.2 3.4E-06 7.4E-11 52.4 4.6 70 3-72 104-174 (352)
39 PRK11551 putative 3-hydroxyphe 98.2 5.2E-06 1.1E-10 53.1 5.4 71 4-74 123-194 (406)
40 PRK11273 glpT sn-glycerol-3-ph 98.2 2E-05 4.2E-10 51.5 7.9 67 7-73 370-439 (452)
41 PRK10406 alpha-ketoglutarate t 98.2 1.1E-05 2.4E-10 52.4 6.7 71 5-77 357-429 (432)
42 TIGR00712 glpT glycerol-3-phos 98.1 1.7E-05 3.7E-10 51.6 7.2 69 5-73 139-209 (438)
43 PRK09952 shikimate transporter 98.1 2.3E-05 5E-10 51.1 7.7 69 4-73 363-435 (438)
44 PRK09874 drug efflux system pr 98.1 3E-05 6.5E-10 49.5 7.9 69 5-73 127-196 (408)
45 TIGR00900 2A0121 H+ Antiporter 98.1 2.9E-05 6.4E-10 48.4 7.6 64 4-67 112-176 (365)
46 PRK10077 xylE D-xylose transpo 98.1 3.9E-05 8.6E-10 50.0 8.4 71 3-74 139-218 (479)
47 PRK11646 multidrug resistance 98.1 3.2E-05 6.9E-10 49.9 7.8 70 4-73 119-188 (400)
48 TIGR01299 synapt_SV2 synaptic 98.1 4.5E-05 9.8E-10 53.1 8.8 70 3-73 274-357 (742)
49 PRK12307 putative sialic acid 98.1 1.8E-05 4E-10 50.9 6.3 71 4-74 341-413 (426)
50 TIGR00893 2A0114 d-galactonate 98.0 2E-05 4.4E-10 49.3 6.0 66 2-67 329-396 (399)
51 PLN00028 nitrate transmembrane 98.0 7.8E-05 1.7E-09 49.2 8.4 65 7-71 146-220 (476)
52 TIGR00879 SP MFS transporter, 98.0 3.5E-05 7.6E-10 49.5 6.5 71 3-74 146-220 (481)
53 PRK05122 major facilitator sup 98.0 4.5E-05 9.7E-10 48.8 6.8 71 7-78 325-396 (399)
54 KOG2532 Permease of the major 98.0 0.00012 2.6E-09 48.7 8.8 81 3-83 147-233 (466)
55 PRK11551 putative 3-hydroxyphe 98.0 3.2E-05 6.8E-10 49.5 5.9 66 4-69 328-395 (406)
56 TIGR00891 2A0112 putative sial 98.0 9.5E-05 2.1E-09 46.9 8.1 70 4-74 120-192 (405)
57 PRK10504 putative transporter; 98.0 6.5E-05 1.4E-09 49.1 7.4 71 3-73 117-188 (471)
58 TIGR00898 2A0119 cation transp 97.9 0.00016 3.4E-09 47.7 8.9 68 3-73 199-266 (505)
59 TIGR00881 2A0104 phosphoglycer 97.9 7.6E-06 1.6E-10 51.2 2.4 71 3-73 102-174 (379)
60 TIGR00712 glpT glycerol-3-phos 97.9 2E-05 4.4E-10 51.2 4.4 69 7-75 368-438 (438)
61 PRK12307 putative sialic acid 97.9 4.1E-05 9E-10 49.3 5.7 70 4-74 126-196 (426)
62 PRK11195 lysophospholipid tran 97.9 0.00014 3.1E-09 46.8 7.8 71 3-74 107-177 (393)
63 PRK15462 dipeptide/tripeptide 97.9 7.7E-05 1.7E-09 49.9 6.6 59 3-61 119-180 (493)
64 TIGR00899 2A0120 sugar efflux 97.9 9.2E-05 2E-09 46.7 6.6 72 3-74 106-180 (375)
65 PRK15075 citrate-proton sympor 97.8 6.7E-05 1.5E-09 48.8 6.0 74 3-79 350-428 (434)
66 PRK10406 alpha-ketoglutarate t 97.8 0.00011 2.4E-09 47.8 6.9 72 3-75 143-223 (432)
67 cd06174 MFS The Major Facilita 97.8 0.00011 2.4E-09 45.4 6.4 65 3-67 284-349 (352)
68 PRK15034 nitrate/nitrite trans 97.8 0.00039 8.4E-09 46.3 9.2 81 5-85 148-249 (462)
69 KOG0255 Synaptic vesicle trans 97.8 0.00026 5.7E-09 47.1 8.5 68 4-74 191-258 (521)
70 PRK09556 uhpT sugar phosphate 97.8 0.00011 2.3E-09 48.3 6.6 68 7-74 372-454 (467)
71 PRK11652 emrD multidrug resist 97.8 0.00023 4.9E-09 45.5 7.9 71 5-75 117-188 (394)
72 PRK09705 cynX putative cyanate 97.8 0.00019 4.1E-09 46.2 7.4 73 5-77 313-388 (393)
73 PRK12382 putative transporter; 97.8 0.00024 5.2E-09 45.4 7.7 65 5-69 323-388 (392)
74 PRK11010 ampG muropeptide tran 97.8 0.0002 4.4E-09 47.6 7.5 69 5-74 128-198 (491)
75 TIGR00886 2A0108 nitrite extru 97.8 0.0002 4.4E-09 45.0 7.1 69 5-73 111-191 (366)
76 PRK10642 proline/glycine betai 97.7 0.00021 4.6E-09 47.3 7.2 70 4-74 138-216 (490)
77 PRK11043 putative transporter; 97.7 0.00039 8.4E-09 44.6 8.2 64 6-69 116-180 (401)
78 PRK11273 glpT sn-glycerol-3-ph 97.7 0.00023 5E-09 46.6 7.3 68 6-73 142-211 (452)
79 cd06174 MFS The Major Facilita 97.7 0.00033 7.1E-09 43.3 7.3 64 3-66 106-170 (352)
80 TIGR00890 2A0111 Oxalate/Forma 97.7 0.00012 2.6E-09 45.8 5.3 58 5-62 316-374 (377)
81 PRK11902 ampG muropeptide tran 97.7 0.00022 4.8E-09 45.9 6.5 71 3-74 113-185 (402)
82 PRK15075 citrate-proton sympor 97.7 0.00023 5E-09 46.3 6.4 68 5-73 138-214 (434)
83 PRK03893 putative sialic acid 97.6 0.00026 5.7E-09 46.5 6.4 68 5-73 129-197 (496)
84 PRK06814 acylglycerophosphoeth 97.6 0.00057 1.2E-08 49.3 7.7 72 2-74 126-198 (1140)
85 PRK03699 putative transporter; 97.6 0.0012 2.6E-08 42.5 8.5 63 4-66 115-179 (394)
86 PF03825 Nuc_H_symport: Nucleo 97.6 0.0011 2.3E-08 43.3 8.3 69 6-74 323-399 (400)
87 PRK09528 lacY galactoside perm 97.6 0.00026 5.7E-09 45.8 5.5 67 6-72 337-405 (420)
88 PRK10207 dipeptide/tripeptide 97.6 0.00062 1.3E-08 45.4 7.3 55 3-57 124-181 (489)
89 KOG0569 Permease of the major 97.6 0.00067 1.4E-08 45.4 7.3 69 5-74 137-208 (485)
90 TIGR00805 oat sodium-independe 97.6 0.00077 1.7E-08 46.3 7.9 70 3-73 191-283 (633)
91 PRK09952 shikimate transporter 97.5 0.00054 1.2E-08 44.8 6.7 70 4-74 145-223 (438)
92 TIGR00892 2A0113 monocarboxyla 97.5 0.00044 9.6E-09 45.4 6.2 63 5-68 129-192 (455)
93 PRK03893 putative sialic acid 97.5 0.00014 3.1E-09 47.7 3.7 56 4-59 386-442 (496)
94 PRK15011 sugar efflux transpor 97.5 0.00093 2E-08 42.9 7.3 67 5-73 326-393 (393)
95 PRK10489 enterobactin exporter 97.5 0.00095 2.1E-08 43.1 7.3 67 6-73 132-199 (417)
96 COG2271 UhpC Sugar phosphate p 97.5 0.00011 2.5E-09 48.2 3.0 71 3-73 136-209 (448)
97 TIGR00890 2A0111 Oxalate/Forma 97.5 0.00036 7.8E-09 43.7 5.1 65 7-72 114-179 (377)
98 PRK08633 2-acyl-glycerophospho 97.4 0.0012 2.6E-08 47.5 7.9 44 3-46 122-165 (1146)
99 PRK03545 putative arabinose tr 97.4 0.0014 3.1E-08 41.9 7.4 64 6-70 316-380 (390)
100 KOG1330 Sugar transporter/spin 97.4 7.3E-06 1.6E-10 54.1 -3.0 74 2-75 139-214 (493)
101 TIGR00883 2A0106 metabolite-pr 97.4 0.0018 3.9E-08 40.8 7.7 70 4-74 116-194 (394)
102 PF06609 TRI12: Fungal trichot 97.4 0.00078 1.7E-08 46.2 6.2 62 6-67 152-214 (599)
103 PRK15011 sugar efflux transpor 97.4 0.0016 3.5E-08 41.9 7.3 71 5-75 126-199 (393)
104 COG2223 NarK Nitrate/nitrite t 97.4 0.00083 1.8E-08 44.1 5.8 65 7-72 127-195 (417)
105 TIGR00899 2A0120 sugar efflux 97.3 0.0016 3.5E-08 41.1 7.0 62 4-66 308-370 (375)
106 PF01306 LacY_symp: LacY proto 97.3 0.002 4.3E-08 42.4 7.2 70 6-75 334-405 (412)
107 TIGR01272 gluP glucose/galacto 97.3 0.0025 5.4E-08 40.1 7.5 72 4-75 30-119 (310)
108 TIGR00892 2A0113 monocarboxyla 97.3 0.00014 3.1E-09 47.8 1.6 62 4-65 353-416 (455)
109 TIGR00924 yjdL_sub1_fam amino 97.2 0.0023 4.9E-08 42.5 6.6 70 2-71 399-469 (475)
110 PRK09556 uhpT sugar phosphate 97.2 0.00026 5.7E-09 46.5 2.2 69 3-71 141-213 (467)
111 PRK09584 tppB putative tripept 97.2 0.0051 1.1E-07 41.2 8.1 59 3-61 131-192 (500)
112 KOG2816 Predicted transporter 97.1 0.0051 1.1E-07 41.1 7.6 76 4-79 132-208 (463)
113 TIGR00885 fucP L-fucose:H+ sym 97.1 0.0063 1.4E-07 39.7 7.9 68 6-73 116-211 (410)
114 KOG0254 Predicted transporter 97.1 0.0042 9E-08 41.6 7.1 67 5-73 163-232 (513)
115 PRK09705 cynX putative cyanate 97.0 0.0086 1.9E-07 38.6 8.0 57 5-62 118-176 (393)
116 TIGR00897 2A0118 polyol permea 97.0 0.0073 1.6E-07 39.0 7.7 61 7-68 338-399 (402)
117 KOG2533 Permease of the major 97.0 0.00041 9E-09 46.5 2.0 72 3-74 153-231 (495)
118 PF11700 ATG22: Vacuole efflux 97.0 0.005 1.1E-07 41.2 7.0 72 5-77 401-474 (477)
119 PRK09874 drug efflux system pr 97.0 0.0021 4.5E-08 41.1 5.1 65 7-71 334-399 (408)
120 TIGR00897 2A0118 polyol permea 97.0 0.0038 8.1E-08 40.3 6.2 47 7-53 128-176 (402)
121 TIGR00924 yjdL_sub1_fam amino 97.0 0.006 1.3E-07 40.6 7.2 61 3-63 121-185 (475)
122 PRK12382 putative transporter; 97.0 0.0072 1.6E-07 38.7 7.2 50 6-55 134-184 (392)
123 TIGR02718 sider_RhtX_FptX side 97.0 0.009 1.9E-07 38.3 7.6 66 7-72 120-186 (390)
124 PRK05122 major facilitator sup 96.9 0.0053 1.1E-07 39.3 6.4 57 5-61 133-190 (399)
125 KOG3764 Vesicular amine transp 96.9 0.00061 1.3E-08 44.8 2.0 72 5-76 180-253 (464)
126 KOG2615 Permease of the major 96.9 0.00091 2E-08 43.9 2.7 41 5-45 141-181 (451)
127 PTZ00207 hypothetical protein; 96.9 0.011 2.4E-07 40.7 7.6 65 6-71 142-206 (591)
128 TIGR00891 2A0112 putative sial 96.8 0.0033 7.2E-08 39.9 4.8 44 4-47 348-392 (405)
129 TIGR02332 HpaX 4-hydroxyphenyl 96.8 0.0015 3.3E-08 42.4 3.1 52 6-57 355-408 (412)
130 TIGR00792 gph sugar (Glycoside 96.8 0.015 3.2E-07 37.7 7.6 42 4-45 331-379 (437)
131 TIGR00792 gph sugar (Glycoside 96.7 0.014 3.1E-07 37.7 7.1 68 7-74 122-198 (437)
132 PRK03633 putative MFS family t 96.7 0.019 4.2E-07 36.7 7.5 66 3-68 304-370 (381)
133 PRK11646 multidrug resistance 96.7 0.0081 1.8E-07 38.9 5.8 44 3-46 316-359 (400)
134 TIGR00806 rfc RFC reduced fola 96.6 0.025 5.4E-07 38.3 7.9 47 5-51 135-181 (511)
135 TIGR00881 2A0104 phosphoglycer 96.6 0.0021 4.5E-08 40.3 2.8 44 5-48 331-375 (379)
136 TIGR00896 CynX cyanate transpo 96.6 0.034 7.4E-07 35.1 8.1 56 5-61 108-166 (355)
137 TIGR00883 2A0106 metabolite-pr 96.5 0.0031 6.7E-08 39.7 3.1 45 3-47 331-377 (394)
138 PRK11010 ampG muropeptide tran 96.4 0.024 5.2E-07 37.9 6.9 68 5-73 337-405 (491)
139 PRK10054 putative transporter; 96.4 0.024 5.1E-07 36.7 6.7 65 3-68 317-382 (395)
140 PRK10504 putative transporter; 96.4 0.016 3.5E-07 38.0 5.9 40 6-45 375-414 (471)
141 PRK08633 2-acyl-glycerophospho 96.4 0.02 4.3E-07 41.5 6.6 67 5-71 343-411 (1146)
142 TIGR02718 sider_RhtX_FptX side 96.0 0.057 1.2E-06 34.6 7.0 58 7-64 326-385 (390)
143 TIGR00788 fbt folate/biopterin 96.0 0.12 2.5E-06 34.6 8.5 40 6-45 373-412 (468)
144 PF00083 Sugar_tr: Sugar (and 96.0 7.5E-05 1.6E-09 48.5 -6.3 70 3-73 121-194 (451)
145 PF05977 MFS_3: Transmembrane 96.0 0.063 1.4E-06 36.5 7.1 70 6-75 329-400 (524)
146 KOG2504 Monocarboxylate transp 96.0 0.021 4.6E-07 38.6 4.9 60 12-71 162-222 (509)
147 PRK11128 putative 3-phenylprop 95.9 0.028 6.1E-07 36.0 5.1 65 6-73 116-181 (382)
148 TIGR01301 GPH_sucrose GPH fami 95.9 0.085 1.8E-06 35.6 7.4 69 6-74 136-222 (477)
149 PRK03633 putative MFS family t 95.8 0.068 1.5E-06 34.2 6.7 39 7-45 117-155 (381)
150 TIGR00902 2A0127 phenyl propri 95.8 0.1 2.2E-06 33.6 7.4 59 6-65 315-374 (382)
151 PF13347 MFS_2: MFS/sugar tran 95.8 0.037 8.1E-07 36.1 5.5 66 7-72 126-200 (428)
152 TIGR00895 2A0115 benzoate tran 95.8 0.016 3.5E-07 36.5 3.8 41 3-43 357-397 (398)
153 PF05977 MFS_3: Transmembrane 95.8 0.047 1E-06 37.1 6.0 63 3-65 122-185 (524)
154 PRK11462 putative transporter; 95.7 0.18 3.9E-06 33.5 8.3 67 7-73 132-207 (460)
155 PRK09584 tppB putative tripept 95.6 0.01 2.2E-07 39.8 2.5 66 2-67 400-476 (500)
156 TIGR00900 2A0121 H+ Antiporter 95.6 0.028 6.1E-07 35.1 4.3 43 3-45 320-362 (365)
157 PRK03699 putative transporter; 95.6 0.041 8.8E-07 35.4 5.0 59 7-66 317-376 (394)
158 PRK09528 lacY galactoside perm 95.5 0.054 1.2E-06 35.1 5.3 56 17-72 138-193 (420)
159 PRK09669 putative symporter Ya 95.4 0.4 8.7E-06 31.5 9.2 67 7-73 132-207 (444)
160 TIGR00902 2A0127 phenyl propri 95.3 0.057 1.2E-06 34.7 5.0 52 5-58 115-167 (382)
161 PRK06814 acylglycerophosphoeth 95.2 0.072 1.6E-06 38.9 5.6 57 5-61 355-413 (1140)
162 PF03092 BT1: BT1 family; Int 95.2 0.37 8E-06 32.0 8.5 70 7-77 341-419 (433)
163 TIGR00882 2A0105 oligosacchari 95.0 0.085 1.8E-06 33.9 5.2 61 7-67 330-392 (396)
164 TIGR00710 efflux_Bcr_CflA drug 94.8 0.25 5.4E-06 31.3 6.8 59 4-64 320-378 (385)
165 TIGR00882 2A0105 oligosacchari 94.8 0.16 3.4E-06 32.7 5.9 54 20-73 133-186 (396)
166 PF06813 Nodulin-like: Nodulin 94.8 0.058 1.3E-06 33.4 3.7 52 9-61 121-172 (250)
167 PLN00028 nitrate transmembrane 94.8 0.021 4.6E-07 37.9 1.9 62 5-68 369-431 (476)
168 TIGR00894 2A0114euk Na(+)-depe 94.7 0.04 8.7E-07 36.2 3.1 60 8-68 385-448 (465)
169 TIGR01301 GPH_sucrose GPH fami 94.7 0.26 5.6E-06 33.3 6.8 73 3-75 399-476 (477)
170 COG2271 UhpC Sugar phosphate p 94.6 0.023 4.9E-07 37.8 1.6 65 7-71 369-435 (448)
171 PF03092 BT1: BT1 family; Int 94.4 0.18 3.8E-06 33.4 5.6 58 14-72 119-177 (433)
172 COG2270 Permeases of the major 94.4 0.096 2.1E-06 34.9 4.2 71 5-76 362-434 (438)
173 PRK09669 putative symporter Ya 94.2 0.4 8.7E-06 31.5 6.9 43 3-45 338-387 (444)
174 PRK11102 bicyclomycin/multidru 94.2 0.39 8.5E-06 30.5 6.7 23 7-30 310-332 (377)
175 PRK11902 ampG muropeptide tran 93.8 0.46 1E-05 30.7 6.5 59 7-69 330-389 (402)
176 PF03209 PUCC: PUCC protein; 93.8 0.72 1.6E-05 30.7 7.3 39 7-45 112-150 (403)
177 PRK15402 multidrug efflux syst 93.2 0.57 1.2E-05 30.2 6.2 33 14-46 338-370 (406)
178 TIGR00788 fbt folate/biopterin 93.2 0.2 4.3E-06 33.5 4.2 67 6-74 142-212 (468)
179 PRK10133 L-fucose transporter; 93.1 1.3 2.7E-05 29.4 7.8 39 5-43 138-176 (438)
180 KOG3762 Predicted transporter 93.0 0.29 6.4E-06 33.9 4.7 60 7-66 482-543 (618)
181 PRK15462 dipeptide/tripeptide 92.7 0.95 2.1E-05 30.8 6.8 42 2-43 395-437 (493)
182 PRK10091 MFS transport protein 92.7 1.2 2.7E-05 28.5 7.2 59 8-68 314-374 (382)
183 PF11700 ATG22: Vacuole efflux 92.6 1.3 2.7E-05 30.0 7.3 69 7-75 149-252 (477)
184 PF00854 PTR2: POT family; In 92.5 0.61 1.3E-05 30.0 5.6 62 5-66 54-119 (372)
185 COG3104 PTR2 Dipeptide/tripept 92.4 0.085 1.8E-06 35.7 1.6 63 3-65 136-201 (498)
186 PRK10207 dipeptide/tripeptide 92.1 0.99 2.1E-05 30.4 6.3 69 3-71 398-477 (489)
187 PF07690 MFS_1: Major Facilita 91.9 0.24 5.2E-06 30.8 3.2 35 3-37 318-352 (352)
188 PRK15034 nitrate/nitrite trans 91.8 1.1 2.3E-05 30.4 6.2 54 17-70 399-454 (462)
189 PRK10473 multidrug efflux syst 91.4 1.2 2.5E-05 28.6 5.9 46 7-55 313-359 (392)
190 KOG0253 Synaptic vesicle trans 91.2 3.4 7.3E-05 28.0 7.9 65 7-73 188-253 (528)
191 PRK11043 putative transporter; 90.4 1.3 2.7E-05 28.6 5.5 38 7-45 319-356 (401)
192 COG2211 MelB Na+/melibiose sym 90.3 2.1 4.5E-05 29.1 6.4 67 7-73 135-210 (467)
193 PRK11195 lysophospholipid tran 90.3 2 4.4E-05 27.9 6.3 59 7-65 316-375 (393)
194 PRK09848 glucuronide transport 90.3 2.3 5E-05 28.0 6.6 41 5-45 340-387 (448)
195 PRK10429 melibiose:sodium symp 89.9 4.1 8.9E-05 27.2 7.6 67 7-73 129-204 (473)
196 KOG2325 Predicted transporter/ 89.6 2.4 5.3E-05 29.0 6.4 67 7-73 152-232 (488)
197 TIGR01272 gluP glucose/galacto 88.7 1.6 3.5E-05 27.6 4.9 49 3-53 249-298 (310)
198 PRK10213 nepI ribonucleoside t 88.7 4.7 0.0001 26.2 7.1 57 8-65 329-386 (394)
199 PTZ00207 hypothetical protein; 86.2 3.7 8.1E-05 28.8 5.8 70 4-74 472-556 (591)
200 PRK11128 putative 3-phenylprop 86.0 7 0.00015 25.1 7.5 57 7-64 316-373 (382)
201 COG2814 AraJ Arabinose efflux 85.5 8.7 0.00019 25.7 8.3 59 9-68 325-384 (394)
202 PRK11652 emrD multidrug resist 85.4 6.7 0.00015 25.2 6.5 41 4-45 319-359 (394)
203 PRK15403 multidrug efflux syst 85.0 8.6 0.00019 25.2 7.6 46 17-62 344-389 (413)
204 KOG4686 Predicted sugar transp 84.7 3.2 6.9E-05 27.3 4.6 41 5-45 373-413 (459)
205 TIGR00711 efflux_EmrB drug res 83.7 2.9 6.4E-05 27.5 4.3 39 7-45 371-409 (485)
206 TIGR00926 2A1704 Peptide:H+ sy 82.8 9.8 0.00021 27.1 6.7 55 11-65 592-646 (654)
207 KOG2563 Permease of the major 82.8 3 6.6E-05 28.4 4.1 38 8-45 164-201 (480)
208 KOG2504 Monocarboxylate transp 82.6 0.22 4.8E-06 33.9 -1.2 62 5-66 409-472 (509)
209 TIGR00926 2A1704 Peptide:H+ sy 82.0 16 0.00035 26.1 8.9 61 6-66 107-178 (654)
210 PRK10429 melibiose:sodium symp 81.5 10 0.00022 25.3 6.3 42 4-45 344-392 (473)
211 COG2807 CynX Cyanate permease 81.2 12 0.00025 25.1 6.2 56 14-69 327-384 (395)
212 COG0738 FucP Fucose permease [ 80.4 2.1 4.7E-05 28.7 2.7 58 4-63 344-402 (422)
213 COG5336 Uncharacterized protei 79.3 8.3 0.00018 21.1 6.9 52 14-65 36-90 (116)
214 COG2223 NarK Nitrate/nitrite t 78.9 4.3 9.3E-05 27.3 3.8 64 5-69 335-400 (417)
215 PF04281 Tom22: Mitochondrial 78.6 9.9 0.00022 21.6 5.2 22 9-30 60-81 (137)
216 TIGR00901 2A0125 AmpG-related 77.3 1.4 3.1E-05 27.8 1.3 26 4-29 329-354 (356)
217 PF05631 DUF791: Protein of un 76.9 19 0.00041 23.9 7.5 64 13-76 155-222 (354)
218 COG0738 FucP Fucose permease [ 76.6 21 0.00045 24.2 7.1 71 5-75 125-216 (422)
219 COG3104 PTR2 Dipeptide/tripept 74.3 7.1 0.00015 26.9 3.9 71 2-72 412-489 (498)
220 PRK11462 putative transporter; 73.9 23 0.0005 23.7 6.3 41 5-45 339-386 (460)
221 PF01306 LacY_symp: LacY proto 73.7 25 0.00054 23.7 6.9 51 18-68 136-186 (412)
222 PRK03612 spermidine synthase; 71.2 31 0.00066 23.9 6.4 47 19-65 144-192 (521)
223 TIGR00885 fucP L-fucose:H+ sym 69.3 19 0.00041 23.7 5.0 41 3-45 340-380 (410)
224 TIGR00986 3a0801s05tom22 mitoc 69.2 19 0.00042 20.7 4.8 22 9-30 58-79 (145)
225 KOG0252 Inorganic phosphate tr 68.0 39 0.00084 23.7 7.6 48 13-64 81-129 (538)
226 KOG2615 Permease of the major 68.0 5.5 0.00012 26.9 2.3 50 7-56 375-426 (451)
227 KOG1237 H+/oligopeptide sympor 67.8 20 0.00042 25.2 5.0 35 11-45 485-519 (571)
228 TIGR00896 CynX cyanate transpo 67.6 17 0.00037 23.0 4.5 34 12-45 314-347 (355)
229 PRK14995 methyl viologen resis 66.7 13 0.00029 24.9 4.0 40 6-45 373-412 (495)
230 PF10183 ESSS: ESSS subunit of 64.8 20 0.00044 19.3 4.0 33 46-78 57-89 (105)
231 KOG2532 Permease of the major 64.5 11 0.00023 25.7 3.2 56 14-69 387-446 (466)
232 PRK10133 L-fucose transporter; 62.7 39 0.00085 22.5 5.6 57 3-61 366-424 (438)
233 TIGR00769 AAA ADP/ATP carrier 60.6 53 0.0011 22.6 8.0 41 4-44 149-189 (472)
234 KOG4473 Uncharacterized membra 60.2 39 0.00085 21.0 7.0 32 14-45 158-189 (247)
235 COG0861 TerC Membrane protein 57.9 45 0.00098 21.0 7.7 39 6-44 38-76 (254)
236 COG2807 CynX Cyanate permease 57.9 56 0.0012 22.1 6.8 61 6-67 121-183 (395)
237 KOG2816 Predicted transporter 57.5 51 0.0011 22.6 5.4 43 3-45 349-391 (463)
238 PRK09848 glucuronide transport 56.5 55 0.0012 21.6 7.2 18 9-26 134-152 (448)
239 TIGR00889 2A0110 nucleoside tr 54.3 34 0.00073 22.6 4.2 43 31-74 141-183 (418)
240 KOG2533 Permease of the major 54.1 16 0.00034 25.2 2.7 45 8-52 391-438 (495)
241 KOG3098 Uncharacterized conser 46.3 97 0.0021 21.4 6.6 40 5-45 374-413 (461)
242 KOG3626 Organic anion transpor 45.7 1.2E+02 0.0026 22.4 7.7 73 3-76 256-348 (735)
243 TIGR00796 livcs branched-chain 44.4 95 0.0021 20.8 6.6 58 26-84 6-63 (378)
244 COG3817 Predicted membrane pro 43.9 71 0.0015 20.5 4.1 52 33-84 108-160 (313)
245 KOG2325 Predicted transporter/ 43.4 5.4 0.00012 27.4 -0.7 52 7-58 411-463 (488)
246 PF06379 RhaT: L-rhamnose-prot 42.0 65 0.0014 21.4 3.9 34 10-43 87-121 (344)
247 TIGR00805 oat sodium-independe 41.3 22 0.00047 25.2 1.8 37 9-45 543-580 (633)
248 PF04695 Pex14_N: Peroxisomal 40.1 11 0.00023 21.2 0.2 15 72-86 31-45 (136)
249 PHA03231 glycoprotein BALF4; P 39.8 1.3E+02 0.0029 22.6 5.4 26 20-45 674-699 (829)
250 COG0477 ProP Permeases of the 39.5 79 0.0017 18.5 6.7 42 3-44 113-156 (338)
251 PF07857 DUF1632: CEO family ( 37.9 1.1E+02 0.0023 19.4 4.7 39 4-42 63-101 (254)
252 PF01350 Flavi_NS4A: Flaviviru 35.3 92 0.002 18.0 4.6 27 54-80 100-127 (144)
253 COG2211 MelB Na+/melibiose sym 33.7 1.6E+02 0.0036 20.4 5.4 8 70-77 204-211 (467)
254 KOG3626 Organic anion transpor 33.1 42 0.00091 24.6 2.2 39 7-45 609-648 (735)
255 PF10997 DUF2837: Protein of u 32.6 67 0.0014 20.4 2.8 33 7-40 167-199 (254)
256 PF13974 YebO: YebO-like prote 31.3 29 0.00063 17.9 0.9 24 58-81 6-29 (80)
257 KOG3810 Micronutrient transpor 30.8 1.8E+02 0.0039 19.9 6.1 40 6-45 116-155 (433)
258 PF14147 Spore_YhaL: Sporulati 30.0 71 0.0015 15.0 2.1 10 49-58 3-12 (52)
259 PF10961 DUF2763: Protein of u 29.8 93 0.002 16.3 3.2 25 52-76 23-47 (91)
260 PF03219 TLC: TLC ATP/ADP tran 29.4 2E+02 0.0043 20.1 7.9 41 5-45 165-205 (491)
261 PF03741 TerC: Integral membra 28.5 1.3E+02 0.0029 17.8 8.1 40 6-45 18-57 (183)
262 PF06785 UPF0242: Uncharacteri 26.9 69 0.0015 21.3 2.2 37 31-67 21-58 (401)
263 PF14159 CAAD: CAAD domains of 25.4 1.1E+02 0.0025 15.9 5.5 36 49-84 49-84 (90)
264 PF12732 YtxH: YtxH-like prote 24.9 1E+02 0.0022 15.2 2.7 20 62-81 12-31 (74)
265 PF05525 Branch_AA_trans: Bran 23.8 2.5E+02 0.0054 19.3 5.1 34 22-55 10-43 (427)
266 PF01770 Folate_carrier: Reduc 23.4 2.5E+02 0.0055 19.2 8.5 39 7-45 116-154 (412)
267 PRK10263 DNA translocase FtsK; 22.4 2.7E+02 0.0058 22.4 4.7 24 32-55 143-167 (1355)
268 PF11085 YqhR: Conserved membr 21.5 2E+02 0.0043 17.2 6.8 37 25-61 73-110 (173)
269 PF05915 DUF872: Eukaryotic pr 20.7 1.7E+02 0.0036 16.1 5.8 65 17-81 41-112 (115)
270 PF04120 Iron_permease: Low af 20.7 1.8E+02 0.0039 16.5 4.0 33 48-81 39-71 (132)
271 KOG3762 Predicted transporter 20.5 3.5E+02 0.0076 19.7 5.2 48 30-77 56-105 (618)
272 PF10225 DUF2215: Uncharacteri 20.1 2.4E+02 0.0052 17.7 7.0 27 51-77 100-126 (249)
No 1
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.75 E-value=1.6e-17 Score=108.46 Aligned_cols=86 Identities=27% Similarity=0.358 Sum_probs=80.8
Q ss_pred CCccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhcccCCCCCHHH
Q 047378 1 MAGLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMMEWSRTGAFSIFWVICIVAVLFVAFLVPETKGRTLEE 80 (87)
Q Consensus 1 ~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~~~ 80 (87)
.||++|.+.+|++|++.|+.++++...++|+.+++..+.++.+.+..+...|+++.+.+++..++.++++||||||+..|
T Consensus 385 ~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~~~filF~i~~~~~~i~~~~~lPETkgr~~~e 464 (485)
T KOG0569|consen 385 PGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGPYVFILFVIPLAIFLIYLYRYLPETKGRTPYE 464 (485)
T ss_pred CCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHhCcccCCCCHHH
Confidence 48999999999999999999999999999999999999999999955559999999999999999999999999999999
Q ss_pred HHHHhh
Q 047378 81 IQISIT 86 (87)
Q Consensus 81 ~~~~~~ 86 (87)
+.+.++
T Consensus 465 I~~~~~ 470 (485)
T KOG0569|consen 465 IIEELE 470 (485)
T ss_pred HHHHHH
Confidence 987665
No 2
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=99.61 E-value=3.5e-17 Score=105.30 Aligned_cols=85 Identities=35% Similarity=0.669 Sum_probs=77.8
Q ss_pred CCccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhcccCCCCCHH
Q 047378 1 MAGLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVPETKGRTLE 79 (87)
Q Consensus 1 ~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~~ 79 (87)
++++.+.+.+|+||++.|+++.|+...++++++++.+.+.+.+.+ .+....+.++++++++..++.++++||||+++++
T Consensus 366 ~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ 445 (451)
T PF00083_consen 366 WGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKGKTLE 445 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEeeCCCCCHH
Confidence 467888999999999999999999999999999999999999887 4558889999999999999999999999999999
Q ss_pred HHHHHh
Q 047378 80 EIQISI 85 (87)
Q Consensus 80 ~~~~~~ 85 (87)
|+|+++
T Consensus 446 ei~~~f 451 (451)
T PF00083_consen 446 EIQEMF 451 (451)
T ss_pred HHHhhC
Confidence 999864
No 3
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=99.58 E-value=2e-14 Score=94.58 Aligned_cols=86 Identities=37% Similarity=0.646 Sum_probs=76.9
Q ss_pred CCccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-hHHHHHHHHHHHHHHH-HHHhhcccCCCCCH
Q 047378 1 MAGLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMMEWSR-TGAFSIFWVICIVAVL-FVAFLVPETKGRTL 78 (87)
Q Consensus 1 ~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~-~~~~~~pet~~~~~ 78 (87)
++|++|.+.+|+||.+.|+++.+++..++|..+++....++.+..... ...|..++.++.+... +.++++||||+++.
T Consensus 412 ~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sl 491 (513)
T KOG0254|consen 412 WGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETKGLTL 491 (513)
T ss_pred cccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccCCCCcH
Confidence 589999999999999999999999999999999999999988887543 7788888888888888 88899999999999
Q ss_pred HHHHHHhh
Q 047378 79 EEIQISIT 86 (87)
Q Consensus 79 ~~~~~~~~ 86 (87)
+|+++.++
T Consensus 492 eei~~~~~ 499 (513)
T KOG0254|consen 492 EEINELFE 499 (513)
T ss_pred HHHHHHHH
Confidence 99988664
No 4
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.53 E-value=4.5e-14 Score=92.53 Aligned_cols=81 Identities=25% Similarity=0.436 Sum_probs=69.1
Q ss_pred CccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h----------hchHHHHHHHHHHHHHHHHHHhhc
Q 047378 2 AGLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-W----------SRTGAFSIFWVICIVAVLFVAFLV 70 (87)
Q Consensus 2 ~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~----------~~~~~~~~~~~~~~~~~~~~~~~~ 70 (87)
+++.|.+.+|++|++.|++++|+....+++++++++.+.+.+.+ . +....+++++++.+++.++. +++
T Consensus 410 ~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~-~~l 488 (502)
T TIGR00887 410 NATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFT-LLI 488 (502)
T ss_pred CchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHh-eEe
Confidence 46678899999999999999999999999999999999999887 2 12457888888888776654 667
Q ss_pred ccCCCCCHHHHHH
Q 047378 71 PETKGRTLEEIQI 83 (87)
Q Consensus 71 pet~~~~~~~~~~ 83 (87)
|||+++++||+|+
T Consensus 489 pEt~~~~leei~~ 501 (502)
T TIGR00887 489 PETKGKSLEELSG 501 (502)
T ss_pred ccCCCCCHHhhhC
Confidence 9999999999875
No 5
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.47 E-value=7.6e-13 Score=85.77 Aligned_cols=85 Identities=32% Similarity=0.489 Sum_probs=74.2
Q ss_pred CccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH------H-hhchHHHHHHHHHHHHHHHHHHhhcccCC
Q 047378 2 AGLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMM------E-WSRTGAFSIFWVICIVAVLFVAFLVPETK 74 (87)
Q Consensus 2 ~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~------~-~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 74 (87)
+|+.+.+++|.+|++.|++++|+....+++++++++.++|.+. + .++...|+++++++++..++.+++.||+|
T Consensus 382 ~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 461 (479)
T PRK10077 382 GPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETK 461 (479)
T ss_pred cchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCC
Confidence 4677899999999999999999999999999999998888765 2 55667888888888888888888889999
Q ss_pred CCCHHHHHHHhh
Q 047378 75 GRTLEEIQISIT 86 (87)
Q Consensus 75 ~~~~~~~~~~~~ 86 (87)
+++.+|+++.++
T Consensus 462 ~~~~~~~~~~~~ 473 (479)
T PRK10077 462 GKTLEEMEALWE 473 (479)
T ss_pred CCCHHHHHHHHh
Confidence 999999988764
No 6
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=99.26 E-value=5.6e-12 Score=82.12 Aligned_cols=80 Identities=26% Similarity=0.480 Sum_probs=68.0
Q ss_pred ccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hhchHHHHHHHHHHHHHHHHHHhhcccCCCC
Q 047378 3 GLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME------WSRTGAFSIFWVICIVAVLFVAFLVPETKGR 76 (87)
Q Consensus 3 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~ 76 (87)
..++++.+|.||+++|++..|++.+++..+++++.+.+.++.+ .+...++++++.++++..++. +++|||+++
T Consensus 425 ~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T-~l~pEtk~~ 503 (538)
T KOG0252|consen 425 ATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFT-LLIPETKGK 503 (538)
T ss_pred ceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHhee-EEeeccccc
Confidence 3467899999999999999999999999999999999998887 245567888888888766665 447899999
Q ss_pred CHHHHHH
Q 047378 77 TLEEIQI 83 (87)
Q Consensus 77 ~~~~~~~ 83 (87)
+++|+++
T Consensus 504 ~leei~~ 510 (538)
T KOG0252|consen 504 SLEEISN 510 (538)
T ss_pred CHHHhcC
Confidence 9999854
No 7
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=99.22 E-value=9.9e-12 Score=79.68 Aligned_cols=75 Identities=21% Similarity=0.312 Sum_probs=64.7
Q ss_pred ccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhcccCCCCCH
Q 047378 3 GLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMMEWSRTGAFSIFWVICIVAVLFVAFLVPETKGRTL 78 (87)
Q Consensus 3 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~ 78 (87)
...|+|++|+||+++|++|.|.++.++++++++.|++. .+.......+..+++.+.+++.+..-++.-|||||+.
T Consensus 453 qvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA-~~~e~s~sl~i~vy~~~~ilagIavcffPiEtkGR~l 527 (528)
T KOG0253|consen 453 QVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA-MRAELSTSLPIFVYGALFILAGIAVCFFPIETKGRSL 527 (528)
T ss_pred eEEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH-HHhccceeehHHHHHHHHHHHHHHheeeeeccCCCCC
Confidence 35789999999999999999999999999999999998 3333555567888999999999988887789999874
No 8
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.11 E-value=4.1e-10 Score=77.40 Aligned_cols=74 Identities=15% Similarity=0.228 Sum_probs=61.7
Q ss_pred cchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhcccCCCCCH
Q 047378 4 LPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMMEWSRTGAFSIFWVICIVAVLFVAFLVPETKGRTL 78 (87)
Q Consensus 4 ~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~ 78 (87)
..+++++|++|++.|++++|+....++++++++|.+.+.+.......++++.+++.+++.++.. ++|||+++.+
T Consensus 668 ~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~~~~pf~i~a~~lll~~ll~~-~LPET~~~~l 741 (742)
T TIGR01299 668 ALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGITKAAPILFASAALACGGLLAL-KLPDTRGQVL 741 (742)
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-hCCCCccccc
Confidence 4568899999999999999999999999999999999888775556677777777777666655 4699998753
No 9
>TIGR00898 2A0119 cation transport protein.
Probab=99.02 E-value=9.8e-10 Score=71.95 Aligned_cols=75 Identities=20% Similarity=0.281 Sum_probs=62.2
Q ss_pred cchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhcccCCCCCHHH
Q 047378 4 LPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMMEWSRTGAFSIFWVICIVAVLFVAFLVPETKGRTLEE 80 (87)
Q Consensus 4 ~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~~~ 80 (87)
..+.+.+|++|++.|++++|+.....++++.++|.+.. +...+....++++++..++..+.. +++|||++++++|
T Consensus 430 ~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~lpet~~~~l~~ 504 (505)
T TIGR00898 430 MVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-LGEKWLFLPLVLFGGLALLAGILT-LFLPETKGVPLPE 504 (505)
T ss_pred HHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHHHHHhhHHHHHHHHHHHHHHHH-HcCcCCCCCCCCC
Confidence 45688999999999999999999999999999999988 444666677888888887776665 4579999987654
No 10
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.02 E-value=1.5e-09 Score=69.55 Aligned_cols=79 Identities=38% Similarity=0.631 Sum_probs=69.3
Q ss_pred CccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhcccCCCCCHHH
Q 047378 2 AGLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVPETKGRTLEE 80 (87)
Q Consensus 2 ~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~~~ 80 (87)
++..+.+.+|.+|++.|++++++......+++++++.+.+.+.+ .++...|+++++++++..+..+++.||+++++.++
T Consensus 401 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 480 (481)
T TIGR00879 401 GPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLEE 480 (481)
T ss_pred cCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccCCCCChhh
Confidence 35667888999999999999999999999999999999998887 67778888999998988888888889999887654
No 11
>PRK10489 enterobactin exporter EntS; Provisional
Probab=98.84 E-value=1e-08 Score=65.83 Aligned_cols=81 Identities=9% Similarity=0.025 Sum_probs=70.1
Q ss_pred chhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHH
Q 047378 5 PSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVPETKGRTLEEIQI 83 (87)
Q Consensus 5 ~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~~~~~~ 83 (87)
...+..|..|.+.|+++.|+......++..+++.+.+.+.+ .+....+...+.+.++..++.+...||+|+++.+|+++
T Consensus 333 ~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (417)
T PRK10489 333 QYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGELRRFRQTPPEV 412 (417)
T ss_pred HHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhcccccccccccccC
Confidence 35678999999999999999999999999999999999998 67777788888777777777777789999999999876
Q ss_pred Hh
Q 047378 84 SI 85 (87)
Q Consensus 84 ~~ 85 (87)
+-
T Consensus 413 ~~ 414 (417)
T PRK10489 413 DA 414 (417)
T ss_pred CC
Confidence 54
No 12
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=98.67 E-value=1.8e-07 Score=50.95 Aligned_cols=71 Identities=21% Similarity=0.314 Sum_probs=59.6
Q ss_pred ccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhcccC
Q 047378 3 GLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVPET 73 (87)
Q Consensus 3 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet 73 (87)
+..+.+..|.+|.+.|+++.++......++..+++.+.+.+.+ .++...+++.+...++..+..++..||+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (141)
T TIGR00880 70 VAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPET 141 (141)
T ss_pred HhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 3456788999999999999999999999999999999998887 5666788888888888777777766764
No 13
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=98.67 E-value=2.6e-07 Score=60.82 Aligned_cols=73 Identities=15% Similarity=0.157 Sum_probs=53.1
Q ss_pred chhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh-chHHHHHHHHHHHHHHHHHHhhcccCCCCCH
Q 047378 5 PSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WS-RTGAFSIFWVICIVAVLFVAFLVPETKGRTL 78 (87)
Q Consensus 5 ~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~-~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~ 78 (87)
...+.+|++|++.|++++|+.+.....++.++|.+.+++.+ .+ +...++...+..++..+.. +++||+++...
T Consensus 363 ~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~-~~~pes~~~~~ 437 (490)
T PRK10642 363 MASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITG-VTMKETANRPL 437 (490)
T ss_pred HHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHH-HHhccccCCCC
Confidence 34678899999999999999888888889999999998877 33 3444444455555544444 45699876543
No 14
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=98.55 E-value=7.6e-07 Score=58.93 Aligned_cols=78 Identities=18% Similarity=0.221 Sum_probs=60.9
Q ss_pred chhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHH
Q 047378 5 PSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMMEWSRTGAFSIFWVICIVAVLFVAFLVPETKGRTLEEIQ 82 (87)
Q Consensus 5 ~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~~~~~ 82 (87)
.+.+.+|++|+..|+.+.+.......+++.++|++............+.+++....+.......++|||+++.+.+..
T Consensus 427 ~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lpet~~~~l~~t~ 504 (521)
T KOG0255|consen 427 IFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQMFPLLGLILFGWLALLLGLLSLLLLPETKGKPLPGTL 504 (521)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHhcCcccCCCCCchhH
Confidence 368899999999999999999999999999999988665553322233335767777777776789999998877643
No 15
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=98.55 E-value=7.8e-07 Score=56.97 Aligned_cols=69 Identities=9% Similarity=-0.072 Sum_probs=60.5
Q ss_pred hhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhcccCC
Q 047378 6 SVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVPETK 74 (87)
Q Consensus 6 ~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 74 (87)
....+|.+|.+.|++++++......++..+++.+.+.+.+ .+|+..|++.+.+.++..++.++.+||.+
T Consensus 100 ~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p 169 (368)
T TIGR00903 100 FAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALPALP 169 (368)
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 4557899999999999999999999999999999888887 78888898888988888888788888864
No 16
>TIGR00893 2A0114 d-galactonate transporter.
Probab=98.52 E-value=5.6e-07 Score=56.33 Aligned_cols=73 Identities=21% Similarity=0.170 Sum_probs=60.1
Q ss_pred ccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhcccCCC
Q 047378 3 GLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVPETKG 75 (87)
Q Consensus 3 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet~~ 75 (87)
+....+++|.+|.+.|+++.++......++..+++.+...+.+ .++++.|.+.++..++..+...+..||++.
T Consensus 101 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (399)
T TIGR00893 101 PGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQ 174 (399)
T ss_pred hHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhheecCCCC
Confidence 3456789999999999999999999999999999999888777 778888888888877777766666666543
No 17
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=98.46 E-value=2.6e-06 Score=56.32 Aligned_cols=70 Identities=16% Similarity=0.212 Sum_probs=49.3
Q ss_pred ccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------hhchHHHHHHHHH
Q 047378 3 GLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME------------------------WSRTGAFSIFWVI 58 (87)
Q Consensus 3 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~------------------------~~~~~~~~~~~~~ 58 (87)
|....|++|.+|++.|++++++......++..+++.+...+.. .+|+..+ ..+.+
T Consensus 134 ~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~-~~~~i 212 (502)
T TIGR00887 134 PLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILI-GFGAV 212 (502)
T ss_pred HHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHH-HHHHH
Confidence 4567899999999999999999998888888777776654332 1355555 44444
Q ss_pred HHHHHHHHHhhcccC
Q 047378 59 CIVAVLFVAFLVPET 73 (87)
Q Consensus 59 ~~~~~~~~~~~~pet 73 (87)
..+...+..+++||+
T Consensus 213 p~~i~~~~~~~lpES 227 (502)
T TIGR00887 213 PALLALYFRLTIPET 227 (502)
T ss_pred HHHHHHHHHHhCCCC
Confidence 444444445678997
No 18
>PRK03545 putative arabinose transporter; Provisional
Probab=98.45 E-value=2e-06 Score=54.89 Aligned_cols=71 Identities=13% Similarity=0.047 Sum_probs=59.3
Q ss_pred cchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhcccCC
Q 047378 4 LPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVPETK 74 (87)
Q Consensus 4 ~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 74 (87)
....+++|.+|.+.|++++|+......++..+++.+...+.+ .++++.|++.+.+.++..+..+...||.+
T Consensus 117 ~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~ 188 (390)
T PRK03545 117 ITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLLP 188 (390)
T ss_pred HHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 345678999999999999999999999999999999888877 68888999988888877776666667643
No 19
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=98.44 E-value=2e-06 Score=55.65 Aligned_cols=73 Identities=8% Similarity=0.046 Sum_probs=59.6
Q ss_pred ccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhchHHHHHHHHHHHHHHHHHHhhcccCCC
Q 047378 3 GLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-------WSRTGAFSIFWVICIVAVLFVAFLVPETKG 75 (87)
Q Consensus 3 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~~~~~~~~~~~~~~~~~~~~~~~~~pet~~ 75 (87)
|....+++|.+|.+.|++++++......++..+++.+...+.+ .+|++.|.+.++..++..++.++++||+++
T Consensus 115 ~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~ 194 (412)
T TIGR02332 115 PGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPD 194 (412)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence 3445678999999999999999998888999999988887763 378888988888887777777777888763
No 20
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=98.43 E-value=1.6e-06 Score=54.71 Aligned_cols=72 Identities=14% Similarity=0.212 Sum_probs=60.3
Q ss_pred chhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhcccCCCC
Q 047378 5 PSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVPETKGR 76 (87)
Q Consensus 5 ~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~ 76 (87)
...+++|.+|.+.|++..++......++..+++.+.+.+.+ .+++..+++.++..++..+..++..||++.+
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (385)
T TIGR00710 114 SQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILPETLPY 186 (385)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 45788999999999999999999999999999999988877 6788888888888887777766667876543
No 21
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=98.42 E-value=2.1e-06 Score=55.69 Aligned_cols=68 Identities=19% Similarity=0.266 Sum_probs=63.6
Q ss_pred cchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhcc
Q 047378 4 LPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVP 71 (87)
Q Consensus 4 ~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~p 71 (87)
+...+.+++-|.+.|++++++......+...++.-+..++.+ .+|+..|+..+.++++..+..+..+|
T Consensus 121 i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 121 IAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred HHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 456788999999999999999999999999999999999999 89999999999999999999999899
No 22
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=98.40 E-value=3.1e-07 Score=59.79 Aligned_cols=73 Identities=21% Similarity=0.220 Sum_probs=61.3
Q ss_pred ccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhcccCCC
Q 047378 3 GLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVPETKG 75 (87)
Q Consensus 3 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet~~ 75 (87)
|....+++|.+|.+.|+++.++......++..+++.+.+.+.+ .++++.|++.+.+.++..++..+..||.+.
T Consensus 109 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~ 182 (485)
T TIGR00711 109 PLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKP 182 (485)
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCccc
Confidence 3456789999999999999999999999999999999988887 788888888888887777776666777544
No 23
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=98.40 E-value=2.8e-06 Score=54.63 Aligned_cols=73 Identities=14% Similarity=0.165 Sum_probs=59.6
Q ss_pred ccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhcccCCC
Q 047378 3 GLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVPETKG 75 (87)
Q Consensus 3 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet~~ 75 (87)
|....+++|.+|.+.|+++.++......++..+++.+.+.+.+ .++++.|++.+.+.++..++.....||+++
T Consensus 127 ~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~~ 200 (394)
T PRK10213 127 AMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSLPG 200 (394)
T ss_pred HHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCCCc
Confidence 3455778999999999999999999999999999999999888 788888888887777666555555687543
No 24
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=98.39 E-value=3.1e-06 Score=54.76 Aligned_cols=72 Identities=17% Similarity=0.097 Sum_probs=60.3
Q ss_pred cchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhcccCCC
Q 047378 4 LPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVPETKG 75 (87)
Q Consensus 4 ~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet~~ 75 (87)
..+.++.|.+|.+.|++.+++......++..+++.+...+.+ .+|++.|++.++..++..++..+.+||++.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~ 196 (413)
T PRK15403 124 VGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPETVK 196 (413)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 345778999999999999999999999999999988888777 688889998888888877766666788753
No 25
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=98.37 E-value=1.9e-06 Score=54.99 Aligned_cols=72 Identities=15% Similarity=0.175 Sum_probs=58.9
Q ss_pred cchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhcccCCC
Q 047378 4 LPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVPETKG 75 (87)
Q Consensus 4 ~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet~~ 75 (87)
..+.+++|.+|.+.|+++.++......++..+++.+...+.+ .+++..+++.+.+.++..++.....||++.
T Consensus 111 ~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 183 (392)
T PRK10473 111 VAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLFILKETRP 183 (392)
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 356788999999999999999998888888888888877766 677788888888888877776676787653
No 26
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=98.37 E-value=3e-06 Score=53.57 Aligned_cols=71 Identities=21% Similarity=0.336 Sum_probs=59.4
Q ss_pred cchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhcccCC
Q 047378 4 LPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVPETK 74 (87)
Q Consensus 4 ~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 74 (87)
....+++|.+|.+.|++++++......++..+++.+...+.+ .++++.|++.+.+.++..++..+..||++
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (377)
T PRK11102 99 VINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFFIPETL 170 (377)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCccC
Confidence 345788999999999999999999999999999999888887 67788888888888877777666677753
No 27
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=98.33 E-value=2e-06 Score=56.13 Aligned_cols=71 Identities=13% Similarity=0.149 Sum_probs=58.9
Q ss_pred ccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-hchHHHHHHHHHHHHHHHHHHhhcccC
Q 047378 3 GLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-W-SRTGAFSIFWVICIVAVLFVAFLVPET 73 (87)
Q Consensus 3 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~-~~~~~~~~~~~~~~~~~~~~~~~~pet 73 (87)
|....+++|.+|.+.|++.+++......++..+++.+...+.+ . +++..|.+.+++.++..++.+...+|.
T Consensus 150 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~ 222 (465)
T TIGR00894 150 PATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADD 222 (465)
T ss_pred hhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCC
Confidence 4456789999999999999999999999999999999988887 4 788889888888877766666555543
No 28
>PRK11663 regulatory protein UhpC; Provisional
Probab=98.32 E-value=2.5e-06 Score=55.40 Aligned_cols=72 Identities=19% Similarity=0.268 Sum_probs=60.0
Q ss_pred hhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhcccCCCCC
Q 047378 6 SVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVPETKGRT 77 (87)
Q Consensus 6 ~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~ 77 (87)
..+.+|.+|++.|++++|+....+.++..++|...+.+.+ .++...|.+.+++.++..+..+...++.++++
T Consensus 359 ~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (434)
T PRK11663 359 GMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPFLNAQAPRE 431 (434)
T ss_pred HHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhhchhc
Confidence 3457899999999999999999999999999999999988 77888888888888887776665555555443
No 29
>TIGR00895 2A0115 benzoate transport.
Probab=98.30 E-value=1.3e-06 Score=55.05 Aligned_cols=72 Identities=14% Similarity=0.191 Sum_probs=59.1
Q ss_pred ccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhcccCC
Q 047378 3 GLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVPETK 74 (87)
Q Consensus 3 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 74 (87)
+....+++|.+|.+.|+++.++......++..+++.+.+.+.+ .+++..+.+.+.+..+...+.....||+.
T Consensus 124 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (398)
T TIGR00895 124 PNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESI 196 (398)
T ss_pred hhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHHHhCCCCC
Confidence 4456889999999999999999999999999999999988887 67777787776666666666666678764
No 30
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=98.29 E-value=3.6e-06 Score=54.64 Aligned_cols=73 Identities=15% Similarity=0.180 Sum_probs=59.4
Q ss_pred cchhhhcccCCcchHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-hh------chHHHHHHHHHHHHHHHHHHhhcccCCC
Q 047378 4 LPSVIMAEIFPINIKGSAGSLVI-LLHNCGNWIVTCTFHFMME-WS------RTGAFSIFWVICIVAVLFVAFLVPETKG 75 (87)
Q Consensus 4 ~~~~~~~E~fp~~~R~~~~~~~~-~~~~~~~~~~~~~~~~l~~-~~------~~~~~~~~~~~~~~~~~~~~~~~pet~~ 75 (87)
....+++|.+|++.|++++|+.. ....++..++|.+.+.+.+ .+ +...|.+.+++.++..++.+++.+|+++
T Consensus 328 ~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~ 407 (418)
T TIGR00889 328 SGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHN 407 (418)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 34467899999999999999997 4567899999999999887 32 4567888888888888888888898865
Q ss_pred C
Q 047378 76 R 76 (87)
Q Consensus 76 ~ 76 (87)
.
T Consensus 408 ~ 408 (418)
T TIGR00889 408 A 408 (418)
T ss_pred C
Confidence 3
No 31
>PRK10054 putative transporter; Provisional
Probab=98.26 E-value=7.8e-06 Score=52.62 Aligned_cols=71 Identities=14% Similarity=0.062 Sum_probs=57.3
Q ss_pred cchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhcccCC
Q 047378 4 LPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMMEWSRTGAFSIFWVICIVAVLFVAFLVPETK 74 (87)
Q Consensus 4 ~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 74 (87)
....+.+|.+|.+.|+++.|+.+....++..+++.+...+...+++..|.+.++..++..+...+..||.+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~~g~~~~f~~~~~~~~i~~i~~~~~~~~~~ 186 (395)
T PRK10054 116 VLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVMQSINLPFWLAAICSAFPLVFIQIWVQRSE 186 (395)
T ss_pred HHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34566789999999999999999999999999999998877767788888887777776666555566553
No 32
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=98.25 E-value=7.2e-06 Score=52.61 Aligned_cols=73 Identities=14% Similarity=0.106 Sum_probs=59.7
Q ss_pred ccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhcccCCC
Q 047378 3 GLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVPETKG 75 (87)
Q Consensus 3 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet~~ 75 (87)
+..+.++.|.+|.+.|.++.++......++..+++.+...+.+ .++++.+++.+++.++..+..++..||+++
T Consensus 120 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (406)
T PRK15402 120 AVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPETAG 193 (406)
T ss_pred HHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence 3456778999999999999999888888888888888888777 678888988888888877766666788754
No 33
>PRK11663 regulatory protein UhpC; Provisional
Probab=98.23 E-value=9.5e-06 Score=52.74 Aligned_cols=70 Identities=14% Similarity=0.201 Sum_probs=56.9
Q ss_pred cchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhcccC
Q 047378 4 LPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVPET 73 (87)
Q Consensus 4 ~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet 73 (87)
....+++|.+|.+.|++++|+......+++.+++.+...+.+ .++++.|++.+++.++..++..+.++|+
T Consensus 131 ~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~ 201 (434)
T PRK11663 131 VCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGLFLCWRLRDK 201 (434)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 445788999999999999999999999999999999888887 7788888888777766655555555654
No 34
>PRK10091 MFS transport protein AraJ; Provisional
Probab=98.23 E-value=8.8e-06 Score=51.96 Aligned_cols=71 Identities=14% Similarity=0.174 Sum_probs=57.5
Q ss_pred chhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhcccCCC
Q 047378 5 PSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVPETKG 75 (87)
Q Consensus 5 ~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet~~ 75 (87)
...+++|.+|.+.|++.+++......++..+++.+...+.+ .++++.|.+.+++.++..+..++..||.+.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~~ 183 (382)
T PRK10091 112 GAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYFWVPDIRD 183 (382)
T ss_pred HHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence 34568899999999999999988888888888888887777 678888988888877777666666788543
No 35
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=98.22 E-value=4.1e-06 Score=55.38 Aligned_cols=69 Identities=17% Similarity=0.128 Sum_probs=57.4
Q ss_pred hhhcccC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhcccCCC
Q 047378 7 VIMAEIF-PINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVPETKG 75 (87)
Q Consensus 7 ~~~~E~f-p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet~~ 75 (87)
..+.+.+ |.+.|+++.|+......++..++|.+...+.+ .+|++.|++...+.++..++..+.+||.++
T Consensus 117 ~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~ 187 (495)
T PRK14995 117 AGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAG 187 (495)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 3444555 78999999999999999999999999999888 788999999888888877777777787543
No 36
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=98.22 E-value=3.4e-06 Score=54.04 Aligned_cols=63 Identities=8% Similarity=0.119 Sum_probs=52.6
Q ss_pred cchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Q 047378 4 LPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMMEWSRTGAFSIFWVICIVAVLFVA 67 (87)
Q Consensus 4 ~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 67 (87)
..+.+.+|.+|++.|+++.|+....+++++.+++...+.+.. +....|.++++..++..+...
T Consensus 300 ~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~-~~~~~f~~~~~~~~i~~~~~~ 362 (368)
T TIGR00903 300 IIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS-SAEAYFTFLAILITIAFAIAL 362 (368)
T ss_pred HHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHH
Confidence 356789999999999999999999999999999998887663 555678888888887777654
No 37
>TIGR00901 2A0125 AmpG-related permease.
Probab=98.21 E-value=9.8e-06 Score=51.06 Aligned_cols=70 Identities=14% Similarity=0.067 Sum_probs=55.2
Q ss_pred chhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh--------chHHHHHHHHHHHHHHHHHHhhcccCC
Q 047378 5 PSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WS--------RTGAFSIFWVICIVAVLFVAFLVPETK 74 (87)
Q Consensus 5 ~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~--------~~~~~~~~~~~~~~~~~~~~~~~pet~ 74 (87)
..++++|.+|.+.|+++.++......++..+++.+...+.. .+ |+..|++.++..++..+...+..||.+
T Consensus 104 ~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~ 182 (356)
T TIGR00901 104 LDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLFLAKEPQ 182 (356)
T ss_pred HHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 35678999999999999999998889999999988887776 55 777888877776665555554457753
No 38
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=98.19 E-value=3.4e-06 Score=52.43 Aligned_cols=70 Identities=19% Similarity=0.323 Sum_probs=57.8
Q ss_pred ccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhccc
Q 047378 3 GLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVPE 72 (87)
Q Consensus 3 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pe 72 (87)
+....+++|.+|.+.|++..++......++..+++.+...+.+ .+++..|++.++..++..++...+.++
T Consensus 104 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~ 174 (352)
T PF07690_consen 104 PASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFLPE 174 (352)
T ss_dssp HHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC--
T ss_pred ccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhHhhhhhh
Confidence 3456789999999999999999999999999999999998875 678888999999988887764444543
No 39
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=98.18 E-value=5.2e-06 Score=53.07 Aligned_cols=71 Identities=15% Similarity=0.070 Sum_probs=55.2
Q ss_pred cchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhcccCC
Q 047378 4 LPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVPETK 74 (87)
Q Consensus 4 ~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 74 (87)
....+++|.+|.+.|++++++......++..+++.+...+.+ .+++..|++.+++.++..+.....+||+.
T Consensus 123 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 194 (406)
T PRK11551 123 NLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESR 194 (406)
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 345778999999999999999998888888888887766666 56777788777766666666666677763
No 40
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=98.16 E-value=2e-05 Score=51.54 Aligned_cols=67 Identities=18% Similarity=0.333 Sum_probs=53.1
Q ss_pred hhhcccCCcchHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhc-ccC
Q 047378 7 VIMAEIFPINIKGSAGSLVILLHNCGNWI-VTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLV-PET 73 (87)
Q Consensus 7 ~~~~E~fp~~~R~~~~~~~~~~~~~~~~~-~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~-pet 73 (87)
.+..|.+|++.|+++.|+......+++.+ ++.+.+.+.+ .++...|++.+..++++.+...... +|+
T Consensus 370 ~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~ 439 (452)
T PRK11273 370 LHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEK 439 (452)
T ss_pred HHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 45779999999999999999888888765 6889999888 6778888888887777776655433 444
No 41
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=98.16 E-value=1.1e-05 Score=52.37 Aligned_cols=71 Identities=17% Similarity=0.188 Sum_probs=45.4
Q ss_pred chhhhcccCCcchHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhchH-HHHHHHHHHHHHHHHHHhhcccCCCCC
Q 047378 5 PSVIMAEIFPINIKGSAGSLVILLHNC-GNWIVTCTFHFMMEWSRTG-AFSIFWVICIVAVLFVAFLVPETKGRT 77 (87)
Q Consensus 5 ~~~~~~E~fp~~~R~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~pet~~~~ 77 (87)
.+.+.+|.||++.|++++|+.+..++. .+...|.+...+...+.+. .+++.++..++..+..++ .++++++
T Consensus 357 ~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~--l~~~~~~ 429 (432)
T PRK10406 357 SGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKSIGMETAFFWYVTLMAVVAFLVSLM--LHRKGKG 429 (432)
T ss_pred HHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHH--hhhcccc
Confidence 457789999999999999999988765 3555666666543344333 444444555554444433 4555554
No 42
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=98.14 E-value=1.7e-05 Score=51.55 Aligned_cols=69 Identities=19% Similarity=0.149 Sum_probs=54.2
Q ss_pred chhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhchHHHHHHHHHHHHHHHHHHhhcccC
Q 047378 5 PSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME--WSRTGAFSIFWVICIVAVLFVAFLVPET 73 (87)
Q Consensus 5 ~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~pet 73 (87)
...+++|.+|.+.|++++|+......+++.+++.+...... .+|+..|++.+++.++..+..++++||+
T Consensus 139 ~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~ 209 (438)
T TIGR00712 139 CGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDT 209 (438)
T ss_pred HHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 34567899999999999999988888888888877665443 4678888888888888777666667764
No 43
>PRK09952 shikimate transporter; Provisional
Probab=98.13 E-value=2.3e-05 Score=51.10 Aligned_cols=69 Identities=9% Similarity=0.204 Sum_probs=49.8
Q ss_pred cchhhhcccCCcchHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-hh--chHHHHHHHHHHHHHHHHHHhhcccC
Q 047378 4 LPSVIMAEIFPINIKGSAGSLVILLHN-CGNWIVTCTFHFMME-WS--RTGAFSIFWVICIVAVLFVAFLVPET 73 (87)
Q Consensus 4 ~~~~~~~E~fp~~~R~~~~~~~~~~~~-~~~~~~~~~~~~l~~-~~--~~~~~~~~~~~~~~~~~~~~~~~pet 73 (87)
..+.+.+|.+|++.|+++.++.+..+. +++.++|.+...+.+ .+ +...+...+++.+++.+.. +.++|+
T Consensus 363 ~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~-~~~~~~ 435 (438)
T PRK09952 363 VQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTA-LLMKDN 435 (438)
T ss_pred HHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHH-HHcccc
Confidence 456789999999999999999887765 788999999999887 32 3445555555555554444 445664
No 44
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=98.12 E-value=3e-05 Score=49.49 Aligned_cols=69 Identities=16% Similarity=0.154 Sum_probs=56.7
Q ss_pred chhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhcccC
Q 047378 5 PSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVPET 73 (87)
Q Consensus 5 ~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet 73 (87)
...++.|.+|.+.|+++.++......++..+++.+...+.+ .+++..+++.+++.++..+...+..+|.
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (408)
T PRK09874 127 ANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIREN 196 (408)
T ss_pred HHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 34567889999999999999988888888999999988877 6788888888888777777666666664
No 45
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=98.11 E-value=2.9e-05 Score=48.41 Aligned_cols=64 Identities=13% Similarity=0.015 Sum_probs=52.1
Q ss_pred cchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHH
Q 047378 4 LPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVA 67 (87)
Q Consensus 4 ~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~ 67 (87)
....+++|.+|.+.|++..|+......++..+++.+...+.+ .+++..+++.++..++..++..
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~ 176 (365)
T TIGR00900 112 AYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIV 176 (365)
T ss_pred HHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999999999999999999999988887 6777777776666555544433
No 46
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=98.10 E-value=3.9e-05 Score=50.05 Aligned_cols=71 Identities=23% Similarity=0.279 Sum_probs=51.0
Q ss_pred ccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH--------H-hhchHHHHHHHHHHHHHHHHHHhhcccC
Q 047378 3 GLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMM--------E-WSRTGAFSIFWVICIVAVLFVAFLVPET 73 (87)
Q Consensus 3 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~--------~-~~~~~~~~~~~~~~~~~~~~~~~~~pet 73 (87)
|...++++|.+|.+.|++.+++......++..+++.+...+. . .+|++.|++.++..++..+. .+++||+
T Consensus 139 ~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~-~~~l~~s 217 (479)
T PRK10077 139 MLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLML-LYFVPET 217 (479)
T ss_pred hHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHH-HHcCCCC
Confidence 446688999999999999999988777777777665544332 2 46777887776666665444 4567887
Q ss_pred C
Q 047378 74 K 74 (87)
Q Consensus 74 ~ 74 (87)
.
T Consensus 218 ~ 218 (479)
T PRK10077 218 P 218 (479)
T ss_pred c
Confidence 4
No 47
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=98.10 E-value=3.2e-05 Score=49.90 Aligned_cols=70 Identities=16% Similarity=0.227 Sum_probs=57.3
Q ss_pred cchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhcccC
Q 047378 4 LPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMMEWSRTGAFSIFWVICIVAVLFVAFLVPET 73 (87)
Q Consensus 4 ~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~pet 73 (87)
....++.|.+|.+.|+++.|+......++..+++.+.+.+.+.++++.|++.+...++..++..+..||.
T Consensus 119 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~~g~~~~f~~~~~~~~~~~i~~~~~~~~~ 188 (400)
T PRK11646 119 PRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQYDFRLVCATGAVLFVLAAAFNAWLLPAY 188 (400)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 3456788999999999999999999999999999999988777777888888777777666555556764
No 48
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=98.09 E-value=4.5e-05 Score=53.15 Aligned_cols=70 Identities=13% Similarity=0.107 Sum_probs=49.5
Q ss_pred ccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-------------hchHHHHHHHHHHHHHHHHHHh
Q 047378 3 GLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-W-------------SRTGAFSIFWVICIVAVLFVAF 68 (87)
Q Consensus 3 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~-------------~~~~~~~~~~~~~~~~~~~~~~ 68 (87)
|+.+++++|.+|.+.|++.+++......++..+++.+...+.. . +|++.+++ .++..+..++..+
T Consensus 274 p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i-~~lp~ll~ll~~~ 352 (742)
T TIGR01299 274 PIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIV-CAFPCVFAIGALT 352 (742)
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHH-HHHHHHHHHHHHH
Confidence 4677899999999999999999888888888887776555443 2 23344444 4444454555667
Q ss_pred hcccC
Q 047378 69 LVPET 73 (87)
Q Consensus 69 ~~pet 73 (87)
++||+
T Consensus 353 ~lPES 357 (742)
T TIGR01299 353 FMPES 357 (742)
T ss_pred HcCCC
Confidence 78998
No 49
>PRK12307 putative sialic acid transporter; Provisional
Probab=98.07 E-value=1.8e-05 Score=50.90 Aligned_cols=71 Identities=13% Similarity=0.199 Sum_probs=50.4
Q ss_pred cchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhch-HHHHHHHHHHHHHHHHHHhhcccCC
Q 047378 4 LPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRT-GAFSIFWVICIVAVLFVAFLVPETK 74 (87)
Q Consensus 4 ~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~-~~~~~~~~~~~~~~~~~~~~~pet~ 74 (87)
+.+.++.|.+|++.|++++|+......+++.++|.+.+.+.+ .+.. ..+++.+..+........+..||+.
T Consensus 341 ~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (426)
T PRK12307 341 LVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGAALTFIVAFWTATILLIIGLSIPDRL 413 (426)
T ss_pred HHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhccccCChhh
Confidence 344678999999999999999999999999999999999887 4433 2344444444444444334456643
No 50
>TIGR00893 2A0114 d-galactonate transporter.
Probab=98.04 E-value=2e-05 Score=49.34 Aligned_cols=66 Identities=18% Similarity=0.245 Sum_probs=54.4
Q ss_pred CccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh-chHHHHHHHHHHHHHHHHHH
Q 047378 2 AGLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WS-RTGAFSIFWVICIVAVLFVA 67 (87)
Q Consensus 2 ~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~-~~~~~~~~~~~~~~~~~~~~ 67 (87)
.|..+.+.+|.+|.+.|+++.|+...+..+++.+++.+.+.+.+ .+ ....+.+.+++.+++.+...
T Consensus 329 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 396 (399)
T TIGR00893 329 GAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYL 396 (399)
T ss_pred hhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHHH
Confidence 35667889999999999999999999999999999999999988 55 56677777776666655543
No 51
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=98.01 E-value=7.8e-05 Score=49.23 Aligned_cols=65 Identities=18% Similarity=0.167 Sum_probs=49.1
Q ss_pred hhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hhchHHHHHHHHHHHHHHHHHHhhcc
Q 047378 7 VIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME----------WSRTGAFSIFWVICIVAVLFVAFLVP 71 (87)
Q Consensus 7 ~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~----------~~~~~~~~~~~~~~~~~~~~~~~~~p 71 (87)
.+++|.+|.+.|++++|+......+++.+++.+.+.+.. .+|++.|++.+++.++..+..+++.+
T Consensus 146 ~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~ 220 (476)
T PLN00028 146 YWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQ 220 (476)
T ss_pred HHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcC
Confidence 468899999999999999987777777777666655432 25788888888888777766655443
No 52
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=97.99 E-value=3.5e-05 Score=49.53 Aligned_cols=71 Identities=17% Similarity=0.202 Sum_probs=51.1
Q ss_pred ccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHH---HHHHH-hhchHHHHHHHHHHHHHHHHHHhhcccCC
Q 047378 3 GLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTF---HFMME-WSRTGAFSIFWVICIVAVLFVAFLVPETK 74 (87)
Q Consensus 3 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~---~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 74 (87)
+....+++|.+|.+.|++++++......++..+++.+. ..... .++++.|++.+...++ .++..+++||+.
T Consensus 146 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~-~~~~~~~l~~~~ 220 (481)
T TIGR00879 146 ALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGL-LFLGLFFLPESP 220 (481)
T ss_pred hHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHH-HHHHHhcCCCCh
Confidence 34567899999999999999999988888888888887 33323 5677777775444444 444445578763
No 53
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=97.98 E-value=4.5e-05 Score=48.78 Aligned_cols=71 Identities=10% Similarity=0.060 Sum_probs=55.4
Q ss_pred hhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhcccCCCCCH
Q 047378 7 VIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVPETKGRTL 78 (87)
Q Consensus 7 ~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~ 78 (87)
....|.+|.+.|+++.|+......++..+++.+.+.+.+ .+++..+.+.+++.+++.+...+ .++.++++.
T Consensus 325 ~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 396 (399)
T PRK05122 325 VEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWL-LYRRAPRAV 396 (399)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH-hcccccccC
Confidence 456789999999999999999999998898988888887 67777888877777776666554 455544443
No 54
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=97.97 E-value=0.00012 Score=48.67 Aligned_cols=81 Identities=12% Similarity=0.163 Sum_probs=65.1
Q ss_pred ccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhchHHHHHHHHHHHHHHHHHHhhcccC----CCC
Q 047378 3 GLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME--WSRTGAFSIFWVICIVAVLFVAFLVPET----KGR 76 (87)
Q Consensus 3 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~pet----~~~ 76 (87)
|....+.+...|.+.|++..++.++...+++++.-.+.+.+-+ .+|+..|+++++++++..++.+.+..|. +..
T Consensus 147 pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~h~~i 226 (466)
T KOG2532|consen 147 PAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSKHPNI 226 (466)
T ss_pred hhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCcccCCCC
Confidence 3455778899999999999999999999999999888888877 6899999999999999888766655432 344
Q ss_pred CHHHHHH
Q 047378 77 TLEEIQI 83 (87)
Q Consensus 77 ~~~~~~~ 83 (87)
+.+|.+.
T Consensus 227 s~~El~~ 233 (466)
T KOG2532|consen 227 SEKELKY 233 (466)
T ss_pred CHHHHHH
Confidence 5555543
No 55
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=97.97 E-value=3.2e-05 Score=49.52 Aligned_cols=66 Identities=12% Similarity=0.197 Sum_probs=49.1
Q ss_pred cchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-h-chHHHHHHHHHHHHHHHHHHhh
Q 047378 4 LPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMMEW-S-RTGAFSIFWVICIVAVLFVAFL 69 (87)
Q Consensus 4 ~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~-~~~~~~~~~~~~~~~~~~~~~~ 69 (87)
..+.+.+|.+|++.|+++.|+......+++.+++.+.+.+.+. + ....++......++..+..+..
T Consensus 328 ~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (406)
T PRK11551 328 VLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLL 395 (406)
T ss_pred HHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 3457789999999999999999999999999999999998873 3 3334444444444444444443
No 56
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=97.97 E-value=9.5e-05 Score=46.87 Aligned_cols=70 Identities=19% Similarity=0.358 Sum_probs=51.0
Q ss_pred cchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh--chHHHHHHHHHHHHHHHHHHhhcccCC
Q 047378 4 LPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WS--RTGAFSIFWVICIVAVLFVAFLVPETK 74 (87)
Q Consensus 4 ~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~--~~~~~~~~~~~~~~~~~~~~~~~pet~ 74 (87)
....+++|.+|.+.|+++.++......++..+++.+...+.+ .+ ++..+.+.+.. .+..++.....||++
T Consensus 120 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~-~~~~~~~~~~~~~~~ 192 (405)
T TIGR00891 120 SSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILP-IIFALWLRKNIPEAE 192 (405)
T ss_pred HHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHH-HHHHHHHHHhCCCCh
Confidence 345778999999999999999999999999999998888776 33 55666554333 333344445568764
No 57
>PRK10504 putative transporter; Provisional
Probab=97.96 E-value=6.5e-05 Score=49.11 Aligned_cols=71 Identities=18% Similarity=0.166 Sum_probs=58.2
Q ss_pred ccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhcccC
Q 047378 3 GLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVPET 73 (87)
Q Consensus 3 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet 73 (87)
|....+++|.+|.+.|+++.++......++..+++.+...+.+ .++++.|.+......+..+......|+.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~ 188 (471)
T PRK10504 117 PVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPNY 188 (471)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 3456778999999999999999998889999999999988888 7778888888777777776666655654
No 58
>TIGR00898 2A0119 cation transport protein.
Probab=97.94 E-value=0.00016 Score=47.73 Aligned_cols=68 Identities=16% Similarity=0.225 Sum_probs=50.0
Q ss_pred ccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhcccC
Q 047378 3 GLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMMEWSRTGAFSIFWVICIVAVLFVAFLVPET 73 (87)
Q Consensus 3 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~pet 73 (87)
+..+.+++|.+|.+.|+++.++......++..+.+.+...+. .|++.+++.++..++..+.. +++||+
T Consensus 199 ~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~--~wr~~~~~~~i~~~~~~~~~-~~~~es 266 (505)
T TIGR00898 199 VQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP--DWRWLQLAVSLPTFLFFLLS-WFVPES 266 (505)
T ss_pred HHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHH-HhcCCC
Confidence 456788999999999999999987666677666666554433 36777777777777666555 567886
No 59
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=97.91 E-value=7.6e-06 Score=51.22 Aligned_cols=71 Identities=18% Similarity=0.189 Sum_probs=55.1
Q ss_pred ccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHH-HHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhcccC
Q 047378 3 GLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTC-TFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVPET 73 (87)
Q Consensus 3 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~-~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet 73 (87)
|....+++|.+|.+.|+++.++......++..+++. ....+.. .+++..|++.+++.++..+...+..||+
T Consensus 102 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (379)
T TIGR00881 102 PPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDS 174 (379)
T ss_pred CchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHheeeCCC
Confidence 456678999999999999999999888999999884 5445545 6777788888777777666666666654
No 60
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=97.91 E-value=2e-05 Score=51.23 Aligned_cols=69 Identities=17% Similarity=0.291 Sum_probs=57.9
Q ss_pred hhhcccCCcchHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhcccCCC
Q 047378 7 VIMAEIFPINIKGSAGSLVILLHNCGN-WIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVPETKG 75 (87)
Q Consensus 7 ~~~~E~fp~~~R~~~~~~~~~~~~~~~-~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet~~ 75 (87)
....|.+|.+.|+++.|+......+++ .++|.+.+.+.+ .++...+.+..+..+++.+...+.+||.|+
T Consensus 368 ~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (438)
T TIGR00712 368 LHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKR 438 (438)
T ss_pred HHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 357799999999999999988888775 578999999888 677788888888888888888888888763
No 61
>PRK12307 putative sialic acid transporter; Provisional
Probab=97.91 E-value=4.1e-05 Score=49.26 Aligned_cols=70 Identities=21% Similarity=0.331 Sum_probs=49.6
Q ss_pred cchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhcccCC
Q 047378 4 LPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVPETK 74 (87)
Q Consensus 4 ~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 74 (87)
....+++|.+|.+.|+++.++......++..+++.+.+.+.+ .++++.+++... ..+...+.....||++
T Consensus 126 ~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~-~~~~~~~~~~~~p~~~ 196 (426)
T PRK12307 126 CASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLL-PVLLVIYIRARAPESK 196 (426)
T ss_pred HHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHH-HHHHHHHHHHHCCCCh
Confidence 345678999999999999999998888999999888887777 667777765433 2232233223346653
No 62
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=97.88 E-value=0.00014 Score=46.83 Aligned_cols=71 Identities=13% Similarity=0.068 Sum_probs=52.1
Q ss_pred ccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhcccCC
Q 047378 3 GLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMMEWSRTGAFSIFWVICIVAVLFVAFLVPETK 74 (87)
Q Consensus 3 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 74 (87)
|...++++|++|.+.|+++.|+.......+..++|.+.+.+.+..+...+.+.+...++. .+..+.+||.+
T Consensus 107 pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~~~~~~~i~~~~~~~~-~~~~~~l~~~~ 177 (393)
T PRK11195 107 PAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPHAEAALAVCALIYLLA-ALFNLFIPRLG 177 (393)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCCCc
Confidence 556688999999999999999999888899999999999888754444454444333333 33345567654
No 63
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=97.87 E-value=7.7e-05 Score=49.86 Aligned_cols=59 Identities=20% Similarity=0.222 Sum_probs=48.6
Q ss_pred ccchhhhcccCCcc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHH
Q 047378 3 GLPSVIMAEIFPIN--IKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIV 61 (87)
Q Consensus 3 ~~~~~~~~E~fp~~--~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~ 61 (87)
|....+++|.||++ .|+++.++.+...++++.++|.+.+.+.+ .+++..|.+.++..++
T Consensus 119 ~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l 180 (493)
T PRK15462 119 SNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIA 180 (493)
T ss_pred ccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHH
Confidence 34457899999986 79999999999999999999999999987 7788888775543333
No 64
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=97.86 E-value=9.2e-05 Score=46.65 Aligned_cols=72 Identities=10% Similarity=-0.033 Sum_probs=54.1
Q ss_pred ccchhhhcccCCcchHHHH--HHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhcccCC
Q 047378 3 GLPSVIMAEIFPINIKGSA--GSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVPETK 74 (87)
Q Consensus 3 ~~~~~~~~E~fp~~~R~~~--~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 74 (87)
|....+..|..|.+.|+.+ .+.......++..+++.+...+.+ .+++..|++.+.+.++..+..++++||.+
T Consensus 106 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 180 (375)
T TIGR00899 106 PQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWLFLPSYP 180 (375)
T ss_pred HHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 3345667788887777755 466666777888899988888877 67888899888887777777666677754
No 65
>PRK15075 citrate-proton symporter; Provisional
Probab=97.85 E-value=6.7e-05 Score=48.78 Aligned_cols=74 Identities=16% Similarity=0.299 Sum_probs=48.0
Q ss_pred ccchhhhcccCCcchHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-hhch---HHHHHHHHHHHHHHHHHHhhcccCCCCC
Q 047378 3 GLPSVIMAEIFPINIKGSAGSLVILLHNC-GNWIVTCTFHFMME-WSRT---GAFSIFWVICIVAVLFVAFLVPETKGRT 77 (87)
Q Consensus 3 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~-~~~~~~~~~~~l~~-~~~~---~~~~~~~~~~~~~~~~~~~~~pet~~~~ 77 (87)
+..+.+.+|.+|.+.|+++.++...+... ++.++|.+.+.+.+ .+.. ..+.+.+.++.. .......+.++..
T Consensus 350 ~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 426 (434)
T PRK15075 350 GAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDKAAPGYWLSFAAVCGL---IATLVLYRRRGAR 426 (434)
T ss_pred hhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCchHHHHHHHHHHHHHH---HHHHHhccccchh
Confidence 34557889999999999999998777765 48889999988888 4432 223333333222 2333456655554
Q ss_pred HH
Q 047378 78 LE 79 (87)
Q Consensus 78 ~~ 79 (87)
++
T Consensus 427 ~~ 428 (434)
T PRK15075 427 LQ 428 (434)
T ss_pred hh
Confidence 44
No 66
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=97.84 E-value=0.00011 Score=47.76 Aligned_cols=72 Identities=22% Similarity=0.267 Sum_probs=46.7
Q ss_pred ccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HhhchHHHHHHHHHHHHHHHHHHhhcccC
Q 047378 3 GLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMM---------EWSRTGAFSIFWVICIVAVLFVAFLVPET 73 (87)
Q Consensus 3 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~---------~~~~~~~~~~~~~~~~~~~~~~~~~~pet 73 (87)
|....+++|.+|.+.|++..++.......+..+++.+...+. ..+|+..|++-++..++. .+.....||+
T Consensus 143 ~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~-~~~~~~~~e~ 221 (432)
T PRK10406 143 GTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVA-LWLRRQLDET 221 (432)
T ss_pred hhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH-HHHHhcCCCC
Confidence 445688999999999999988876665555555554433332 256777787665555543 3334456776
Q ss_pred CC
Q 047378 74 KG 75 (87)
Q Consensus 74 ~~ 75 (87)
+.
T Consensus 222 ~~ 223 (432)
T PRK10406 222 SQ 223 (432)
T ss_pred ch
Confidence 43
No 67
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=97.82 E-value=0.00011 Score=45.42 Aligned_cols=65 Identities=17% Similarity=0.261 Sum_probs=56.4
Q ss_pred ccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHH
Q 047378 3 GLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVA 67 (87)
Q Consensus 3 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~ 67 (87)
+....+..|..|.+.|++..|+......++..+++.+.+.+.+ .++...+.+.+++.++..++.+
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~ 349 (352)
T cd06174 284 PALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLL 349 (352)
T ss_pred hhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhe
Confidence 4567889999999999999999999999999999999999987 6777888888888877766643
No 68
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=97.82 E-value=0.00039 Score=46.28 Aligned_cols=81 Identities=15% Similarity=0.049 Sum_probs=55.3
Q ss_pred chhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------hhchHHHHHHHHHHHHHHHH
Q 047378 5 PSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-------------------WSRTGAFSIFWVICIVAVLF 65 (87)
Q Consensus 5 ~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-------------------~~~~~~~~~~~~~~~~~~~~ 65 (87)
....+++.||.+.|+++.|+....+.++..+.+++.|.+.. .+++...+++....++..++
T Consensus 148 ~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~ 227 (462)
T PRK15034 148 SMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIA 227 (462)
T ss_pred HHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 34668999999999999999987777787777777765441 12445566777777777777
Q ss_pred HHhhcccCC--CCCHHHHHHHh
Q 047378 66 VAFLVPETK--GRTLEEIQISI 85 (87)
Q Consensus 66 ~~~~~pet~--~~~~~~~~~~~ 85 (87)
.++..++.+ ..+.++..+.+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~vl 249 (462)
T PRK15034 228 AWSGMNDIASSRASIADQLPVL 249 (462)
T ss_pred HHHhCCCccccccCHHHHHHHh
Confidence 777665543 33444443333
No 69
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=97.82 E-value=0.00026 Score=47.06 Aligned_cols=68 Identities=21% Similarity=0.199 Sum_probs=55.2
Q ss_pred cchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhcccCC
Q 047378 4 LPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMMEWSRTGAFSIFWVICIVAVLFVAFLVPETK 74 (87)
Q Consensus 4 ~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 74 (87)
+.+.+.+|+++++.|+.+..+ ....+.++.+.+....++.. +|++.+++..+...+..++ ++..||++
T Consensus 191 ~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~-~Wr~~~~~~~~~~~~~~~~-~~l~~Es~ 258 (521)
T KOG0255|consen 191 VGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR-DWRWLFWIISIPSGLFLLL-WFLPPESP 258 (521)
T ss_pred HhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHH-HHccCcCh
Confidence 467889999999999999999 88889999988888888775 7777888777777776666 55566863
No 70
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=97.82 E-value=0.00011 Score=48.33 Aligned_cols=68 Identities=16% Similarity=0.243 Sum_probs=50.7
Q ss_pred hhhcccCCcchHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-------------hhchHHHHHHHHHHHHHHHHHHhh-cc
Q 047378 7 VIMAEIFPINIKGSAGSLVILLHNC-GNWIVTCTFHFMME-------------WSRTGAFSIFWVICIVAVLFVAFL-VP 71 (87)
Q Consensus 7 ~~~~E~fp~~~R~~~~~~~~~~~~~-~~~~~~~~~~~l~~-------------~~~~~~~~~~~~~~~~~~~~~~~~-~p 71 (87)
....|.+|.+.|+++.|+......+ ++.+++.+.+.+.+ .++...|.++++..+++.+...+. ..
T Consensus 372 ~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 451 (467)
T PRK09556 372 VAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAIVAVM 451 (467)
T ss_pred HHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5577999999999999999989886 66899999998887 245666777766666665554433 24
Q ss_pred cCC
Q 047378 72 ETK 74 (87)
Q Consensus 72 et~ 74 (87)
|++
T Consensus 452 ~~~ 454 (467)
T PRK09556 452 EER 454 (467)
T ss_pred HHH
Confidence 544
No 71
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=97.81 E-value=0.00023 Score=45.53 Aligned_cols=71 Identities=10% Similarity=0.105 Sum_probs=55.2
Q ss_pred chhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhcccCCC
Q 047378 5 PSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVPETKG 75 (87)
Q Consensus 5 ~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet~~ 75 (87)
...+..|.++.+.|+++.++......++..+++.+...+.+ .+++..|++.++..++..+...+..||++.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 188 (394)
T PRK11652 117 ARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARWMPETRP 188 (394)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhCCccCc
Confidence 34567889999999999999888888888888888888777 678888888877776666655566788643
No 72
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=97.80 E-value=0.00019 Score=46.19 Aligned_cols=73 Identities=4% Similarity=-0.093 Sum_probs=55.9
Q ss_pred chhhhcccC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh-chHHHHHHHHHHHHHHHHHHhhcccCCCCC
Q 047378 5 PSVIMAEIF-PINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WS-RTGAFSIFWVICIVAVLFVAFLVPETKGRT 77 (87)
Q Consensus 5 ~~~~~~E~f-p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~-~~~~~~~~~~~~~~~~~~~~~~~pet~~~~ 77 (87)
......+.+ |.+.|++..|+......++..++|.+...+.+ .+ ....+.+.+..+++.........||++++.
T Consensus 313 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (393)
T PRK09705 313 CLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPARFPQL 388 (393)
T ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccccch
Confidence 334455666 57889999999999999999999999999998 44 445566666677776667677789987764
No 73
>PRK12382 putative transporter; Provisional
Probab=97.79 E-value=0.00024 Score=45.39 Aligned_cols=65 Identities=8% Similarity=0.089 Sum_probs=54.6
Q ss_pred chhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhh
Q 047378 5 PSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFL 69 (87)
Q Consensus 5 ~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~ 69 (87)
......|.+|.+.|+++.|+......+++.+++.+.+.+.+ .++...+.+.+.+.++..+...+.
T Consensus 323 ~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 388 (392)
T PRK12382 323 LGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTILS 388 (392)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhh
Confidence 34567889999999999999999999999999999999888 678888888888777777665544
No 74
>PRK11010 ampG muropeptide transporter; Validated
Probab=97.78 E-value=0.0002 Score=47.55 Aligned_cols=69 Identities=12% Similarity=0.237 Sum_probs=56.0
Q ss_pred chhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhchHHHHHHHHHHHHHHHHHHhhcccCC
Q 047378 5 PSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME--WSRTGAFSIFWVICIVAVLFVAFLVPETK 74 (87)
Q Consensus 5 ~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 74 (87)
..++.+|.+|.+.|+++.++......++..+++.....+.+ .+|+..|++.++..++..+... ..||+.
T Consensus 128 ~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~-~~~e~~ 198 (491)
T PRK11010 128 FDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATL-LAPEPT 198 (491)
T ss_pred HHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHH-hcCCCc
Confidence 45788999999999999999999999999999988888877 3788888888877776655544 467763
No 75
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=97.77 E-value=0.0002 Score=45.01 Aligned_cols=69 Identities=20% Similarity=0.196 Sum_probs=46.7
Q ss_pred chhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------hchHHH-HHHHHHHHHHHHHHHhhccc
Q 047378 5 PSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMMEW-----------SRTGAF-SIFWVICIVAVLFVAFLVPE 72 (87)
Q Consensus 5 ~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~~~~~~-~~~~~~~~~~~~~~~~~~pe 72 (87)
...+++|.+|.+.|+++.++......++..+++.+.+.+... ++++.+ +..+++..+..++.....+|
T Consensus 111 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (366)
T TIGR00886 111 CMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGAD 190 (366)
T ss_pred HHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHhccc
Confidence 346789999999999999999877777777777776655541 466666 44455555544444444454
Q ss_pred C
Q 047378 73 T 73 (87)
Q Consensus 73 t 73 (87)
+
T Consensus 191 ~ 191 (366)
T TIGR00886 191 T 191 (366)
T ss_pred C
Confidence 3
No 76
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=97.75 E-value=0.00021 Score=47.28 Aligned_cols=70 Identities=21% Similarity=0.243 Sum_probs=46.8
Q ss_pred cchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HhhchHHHHHHHHHHHHHHHHHHhhcccCC
Q 047378 4 LPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMM---------EWSRTGAFSIFWVICIVAVLFVAFLVPETK 74 (87)
Q Consensus 4 ~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~---------~~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 74 (87)
....+++|.+|.+.|++..++......++..+++.+...+. ..+|+..|++.+...++ .++....+||+.
T Consensus 138 ~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~-~~~~~~~~~esp 216 (490)
T PRK10642 138 GASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGII-GLYLRHALEETP 216 (490)
T ss_pred HHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHH-HHHHHHcCCCCh
Confidence 45678999999999999999887666666666665443332 14677777775544443 333445678863
No 77
>PRK11043 putative transporter; Provisional
Probab=97.75 E-value=0.00039 Score=44.57 Aligned_cols=64 Identities=9% Similarity=0.200 Sum_probs=50.9
Q ss_pred hhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhh
Q 047378 6 SVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFL 69 (87)
Q Consensus 6 ~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~ 69 (87)
..+++|.+|.+.|.+..+.......++..+++.+...+.+ .+++..+++.+...++..+...+.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 180 (401)
T PRK11043 116 QALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLRL 180 (401)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHc
Confidence 3567899999999998888887788888899998888887 677788888877777766655443
No 78
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=97.75 E-value=0.00023 Score=46.58 Aligned_cols=68 Identities=18% Similarity=0.098 Sum_probs=48.1
Q ss_pred hhhhcccCCcchHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhcccC
Q 047378 6 SVIMAEIFPINIKGSAGSLVILLHNCGNWI-VTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVPET 73 (87)
Q Consensus 6 ~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~-~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet 73 (87)
.....|.+|.+.|++++|+......+++.+ ++.+...+.. .+|+..|++.+++.++..++..+++||+
T Consensus 142 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~ 211 (452)
T PRK11273 142 GRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFAMMRDT 211 (452)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 356789999999999999987777777644 3433222223 5677788888877777766666667765
No 79
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=97.71 E-value=0.00033 Score=43.34 Aligned_cols=64 Identities=19% Similarity=0.210 Sum_probs=52.3
Q ss_pred ccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHH
Q 047378 3 GLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFV 66 (87)
Q Consensus 3 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~ 66 (87)
+....+.+|.+|.+.|++..++......++..+++.+...+.+ .+++..+++.+...++..+..
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (352)
T cd06174 106 PAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLL 170 (352)
T ss_pred HhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3455789999999999999999999999999999999998888 567777777766666655543
No 80
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=97.70 E-value=0.00012 Score=45.81 Aligned_cols=58 Identities=5% Similarity=-0.005 Sum_probs=48.8
Q ss_pred chhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHH
Q 047378 5 PSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVA 62 (87)
Q Consensus 5 ~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~ 62 (87)
...+.+|.+|.+.|++..|+......+++.+++.+.+.+.+ .++...+.+.+++.+++
T Consensus 316 ~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~ 374 (377)
T TIGR00890 316 FPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS 374 (377)
T ss_pred cHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence 34678999999999999999999999999999999999887 67777777766655553
No 81
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=97.69 E-value=0.00022 Score=45.88 Aligned_cols=71 Identities=7% Similarity=0.118 Sum_probs=55.1
Q ss_pred ccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-hchHHHHHHHHHHHHHHHHHHhhcccCC
Q 047378 3 GLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-W-SRTGAFSIFWVICIVAVLFVAFLVPETK 74 (87)
Q Consensus 3 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~-~~~~~~~~~~~~~~~~~~~~~~~~pet~ 74 (87)
|...++++|.+|.+.|+++.++......++..+++.+...+.+ . +|+..|++.++..++.... .+..||++
T Consensus 113 ~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~-~~~~~e~~ 185 (402)
T PRK11902 113 IVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALT-TLWAPEPE 185 (402)
T ss_pred HHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHH-HHhcCCCc
Confidence 3445788999999999999999998888899998888888777 3 6788888877776665443 34567653
No 82
>PRK15075 citrate-proton symporter; Provisional
Probab=97.67 E-value=0.00023 Score=46.32 Aligned_cols=68 Identities=22% Similarity=0.167 Sum_probs=42.6
Q ss_pred chhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH--------HH-hhchHHHHHHHHHHHHHHHHHHhhcccC
Q 047378 5 PSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFM--------ME-WSRTGAFSIFWVICIVAVLFVAFLVPET 73 (87)
Q Consensus 5 ~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l--------~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet 73 (87)
...+++|.+|.+.|++.+++.....+.+..+++.+...+ .+ .+|+..|++.... +....+.....||+
T Consensus 138 ~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~-~~~~~~~~~~~~e~ 214 (434)
T PRK15075 138 VSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCLI-VPFIFLIRRSLEET 214 (434)
T ss_pred HHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHH-HHHHHHHHHhcCCC
Confidence 457899999999999999998877766665555544433 23 5666677653322 22222233345664
No 83
>PRK03893 putative sialic acid transporter; Provisional
Probab=97.65 E-value=0.00026 Score=46.48 Aligned_cols=68 Identities=18% Similarity=0.381 Sum_probs=50.3
Q ss_pred chhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhcccC
Q 047378 5 PSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVPET 73 (87)
Q Consensus 5 ~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet 73 (87)
...++.|.+|.+.|+++.++......+++.+++.+...+.+ .++++.|++. .+.++..++.....||.
T Consensus 129 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~-~~~~~~~~~~~~~~p~~ 197 (496)
T PRK03893 129 SATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIG-ILPIIFALWLRKNLPEA 197 (496)
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHH-HHHHHHHHHHHHhCCCc
Confidence 45678999999999999999999999999999999988877 5666666543 33333333334445664
No 84
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=97.57 E-value=0.00057 Score=49.30 Aligned_cols=72 Identities=11% Similarity=-0.053 Sum_probs=54.8
Q ss_pred CccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhcccCC
Q 047378 2 AGLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVPETK 74 (87)
Q Consensus 2 ~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 74 (87)
.|...+++.+++|.+.|++++|+......++..+++.+.+.+.. .++...| +...+..+..++..+++|+++
T Consensus 126 ~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 198 (1140)
T PRK06814 126 GPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILV-ALLMGIAVLGWLASLFIPKTG 198 (1140)
T ss_pred chHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHH-HHHHHHHHHHHHHHhhCCCCC
Confidence 46677899999999999999999999999999999999999888 5555555 444444444444445566653
No 85
>PRK03699 putative transporter; Provisional
Probab=97.56 E-value=0.0012 Score=42.46 Aligned_cols=63 Identities=5% Similarity=0.152 Sum_probs=49.1
Q ss_pred cchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhchHHHHHHHHHHHHHHHHH
Q 047378 4 LPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME--WSRTGAFSIFWVICIVAVLFV 66 (87)
Q Consensus 4 ~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~ 66 (87)
....+++|.+|.+.|+++.++......+++.+++.+...+.. .+|++.|.+.++..++..++.
T Consensus 115 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~~ 179 (394)
T PRK03699 115 IGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFILT 179 (394)
T ss_pred chhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 345678999999999999998887778888888888777665 568888887777766655543
No 86
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=97.56 E-value=0.0011 Score=43.34 Aligned_cols=69 Identities=17% Similarity=0.300 Sum_probs=50.6
Q ss_pred hhhhcccCCcchHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-hhch------HHHHHHHHHHHHHHHHHHhhcccCC
Q 047378 6 SVIMAEIFPINIKGSAGSLVILL-HNCGNWIVTCTFHFMME-WSRT------GAFSIFWVICIVAVLFVAFLVPETK 74 (87)
Q Consensus 6 ~~~~~E~fp~~~R~~~~~~~~~~-~~~~~~~~~~~~~~l~~-~~~~------~~~~~~~~~~~~~~~~~~~~~pet~ 74 (87)
..|+.|..|.+.|++++++.... ..+++.++.++.+.+.+ .+.. ..+.+.+++.++..++.+++.+|+.
T Consensus 323 ~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~~ 399 (400)
T PF03825_consen 323 VRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKPKH 399 (400)
T ss_pred HHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 36899999999999999998776 47899999999999988 4433 2344555555555555555556643
No 87
>PRK09528 lacY galactoside permease; Reviewed
Probab=97.56 E-value=0.00026 Score=45.76 Aligned_cols=67 Identities=10% Similarity=0.120 Sum_probs=52.2
Q ss_pred hhhhcccCCcchHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhccc
Q 047378 6 SVIMAEIFPINIKGSAGSLV-ILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVPE 72 (87)
Q Consensus 6 ~~~~~E~fp~~~R~~~~~~~-~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pe 72 (87)
..+++|.+|.+.|++..+.. .....+++.+++.....+.+ .++...|.+.+.+.++..++.++..++
T Consensus 337 ~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~ 405 (420)
T PRK09528 337 FKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSG 405 (420)
T ss_pred HHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcC
Confidence 35678999999999887663 44567888899999999998 677888888888887777766665554
No 88
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=97.56 E-value=0.00062 Score=45.42 Aligned_cols=55 Identities=13% Similarity=0.210 Sum_probs=45.6
Q ss_pred ccchhhhcccCCcch--HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHH
Q 047378 3 GLPSVIMAEIFPINI--KGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWV 57 (87)
Q Consensus 3 ~~~~~~~~E~fp~~~--R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~ 57 (87)
|....+++|.||.+. |+++.++.+...+++..+++.+.+.+.+ .+|++.|++.++
T Consensus 124 ~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i 181 (489)
T PRK10207 124 ANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGA 181 (489)
T ss_pred CCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHH
Confidence 455688999999884 5788999999999999999999999988 777777776433
No 89
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=97.55 E-value=0.00067 Score=45.42 Aligned_cols=69 Identities=16% Similarity=0.207 Sum_probs=45.5
Q ss_pred chhhhcccCCcchHHHHHHHHHHHHHHHHHHH-HHHHHHHHH--hhchHHHHHHHHHHHHHHHHHHhhcccCC
Q 047378 5 PSVIMAEIFPINIKGSAGSLVILLHNCGNWIV-TCTFHFMME--WSRTGAFSIFWVICIVAVLFVAFLVPETK 74 (87)
Q Consensus 5 ~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~-~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 74 (87)
...|++|+.|.+.|+..-.+......++..++ .+..+.+.. ..|++.+.+-.+..++. .+...++||+.
T Consensus 137 ~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~-l~~l~~~PESP 208 (485)
T KOG0569|consen 137 VPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQ-LALLPFLPESP 208 (485)
T ss_pred HHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHH-HHHHhcCCCCc
Confidence 34789999999999988888877777777777 334555554 33444454444444444 44456689973
No 90
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=97.55 E-value=0.00077 Score=46.35 Aligned_cols=70 Identities=10% Similarity=0.040 Sum_probs=52.1
Q ss_pred ccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h----------------------hchHHHHHHHHHH
Q 047378 3 GLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-W----------------------SRTGAFSIFWVIC 59 (87)
Q Consensus 3 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~----------------------~~~~~~~~~~~~~ 59 (87)
++...|+.|.+|.+.|++..|+......++..+++.+...+.+ . .|+..|++.+++.
T Consensus 191 ~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~ 270 (633)
T TIGR00805 191 PLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVA 270 (633)
T ss_pred hcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHH
Confidence 4566899999999999999999999999999999888887765 2 1344566767666
Q ss_pred HHHHHHHHhhcccC
Q 047378 60 IVAVLFVAFLVPET 73 (87)
Q Consensus 60 ~~~~~~~~~~~pet 73 (87)
++..+.. +.+|++
T Consensus 271 ~l~~v~l-~~~p~~ 283 (633)
T TIGR00805 271 LLTSIPF-FFFPKA 283 (633)
T ss_pred HHHHHHH-HhCccc
Confidence 6655543 345543
No 91
>PRK09952 shikimate transporter; Provisional
Probab=97.54 E-value=0.00054 Score=44.76 Aligned_cols=70 Identities=20% Similarity=0.180 Sum_probs=46.7
Q ss_pred cchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hhchHHHHHHHHHHHHHHHHHHhhcccCC
Q 047378 4 LPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME---------WSRTGAFSIFWVICIVAVLFVAFLVPETK 74 (87)
Q Consensus 4 ~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~---------~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 74 (87)
....+++|.+|.+.|++..+.......++..++..+...+.. .+|+..|++.++..++ .++.....||++
T Consensus 145 ~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~-~~~l~~~~~es~ 223 (438)
T PRK09952 145 GAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLI-ALWVRNGMEESA 223 (438)
T ss_pred HHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHH-HHHHHHhCCCCh
Confidence 345789999999999999888877777777666655544331 4677777766555443 333344567764
No 92
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=97.52 E-value=0.00044 Score=45.44 Aligned_cols=63 Identities=13% Similarity=0.128 Sum_probs=51.5
Q ss_pred chhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHh
Q 047378 5 PSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAF 68 (87)
Q Consensus 5 ~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~ 68 (87)
...++.+.+| +.|+++.|+......++..+++.+.+.+.+ .++++.|++.+++.++..+..++
T Consensus 129 ~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~ 192 (455)
T TIGR00892 129 SLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCVCGAL 192 (455)
T ss_pred HHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 3456788886 789999999999999999999999888887 78889999988877766555443
No 93
>PRK03893 putative sialic acid transporter; Provisional
Probab=97.50 E-value=0.00014 Score=47.71 Aligned_cols=56 Identities=7% Similarity=0.033 Sum_probs=45.0
Q ss_pred cchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHH
Q 047378 4 LPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVIC 59 (87)
Q Consensus 4 ~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~ 59 (87)
....+++|.+|.+.|++++|+......+++.+++.+.+.+.+ .+....+...+...
T Consensus 386 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~ 442 (496)
T PRK03893 386 LLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSL 442 (496)
T ss_pred hhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHH
Confidence 344678999999999999999999999999999999999888 55555555444333
No 94
>PRK15011 sugar efflux transporter B; Provisional
Probab=97.50 E-value=0.00093 Score=42.95 Aligned_cols=67 Identities=18% Similarity=0.296 Sum_probs=50.3
Q ss_pred chhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhcccC
Q 047378 5 PSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVPET 73 (87)
Q Consensus 5 ~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet 73 (87)
...+..|.+|.+ |++++++......++..+++.+.+.+.+ .++...+.+.+...+++.+.. ++.||+
T Consensus 326 ~~~~~~~~~p~~-~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~ 393 (393)
T PRK15011 326 GMLYFQDLMPGQ-AGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCL-LRIKDV 393 (393)
T ss_pred HHHHHHHhCCCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-HhhcCC
Confidence 345678999965 9999999888888999999999999888 666667766666666655444 445653
No 95
>PRK10489 enterobactin exporter EntS; Provisional
Probab=97.48 E-value=0.00095 Score=43.10 Aligned_cols=67 Identities=10% Similarity=0.066 Sum_probs=51.1
Q ss_pred hhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhcccC
Q 047378 6 SVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVPET 73 (87)
Q Consensus 6 ~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet 73 (87)
..+++|..|.+.|+++.++......++..+++.+...+.+ .++++.+++.+...++..+. ...+||+
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~ 199 (417)
T PRK10489 132 LAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLP-LLRLPAL 199 (417)
T ss_pred hhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHhCCCC
Confidence 4567899999999999999988889999999999988887 56667776665555554444 3446664
No 96
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=97.48 E-value=0.00011 Score=48.20 Aligned_cols=71 Identities=20% Similarity=0.194 Sum_probs=59.2
Q ss_pred ccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHH--HHHHH-hhchHHHHHHHHHHHHHHHHHHhhcccC
Q 047378 3 GLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTF--HFMME-WSRTGAFSIFWVICIVAVLFVAFLVPET 73 (87)
Q Consensus 3 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~--~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet 73 (87)
|-+...++-.||.+.|++..|+...+.++++.+.+.+. ..... .+++..|++=+++.++..++.++..+|+
T Consensus 136 pp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~ 209 (448)
T COG2271 136 PPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDR 209 (448)
T ss_pred cHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 44557788899999999999999999999999999988 66665 5788889888888888888877776544
No 97
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=97.47 E-value=0.00036 Score=43.67 Aligned_cols=65 Identities=20% Similarity=0.318 Sum_probs=48.3
Q ss_pred hhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhccc
Q 047378 7 VIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVPE 72 (87)
Q Consensus 7 ~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pe 72 (87)
.+..|.+| +.|+++.++......++..+.+.+...+.+ .++++.|.+.++..++..+..+++.+|
T Consensus 114 ~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 179 (377)
T TIGR00890 114 NTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAFLIGY 179 (377)
T ss_pred HHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHheec
Confidence 45677777 579999999988877877776666666665 678888888888888777766655543
No 98
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=97.44 E-value=0.0012 Score=47.52 Aligned_cols=44 Identities=18% Similarity=0.110 Sum_probs=38.6
Q ss_pred ccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047378 3 GLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMMEW 46 (87)
Q Consensus 3 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 46 (87)
|....+++|.+|.+.|++++|+......++..+++.+...+...
T Consensus 122 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~ 165 (1146)
T PRK08633 122 PAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFES 165 (1146)
T ss_pred hHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45567899999999999999999999999999999988887654
No 99
>PRK03545 putative arabinose transporter; Provisional
Probab=97.42 E-value=0.0014 Score=41.95 Aligned_cols=64 Identities=11% Similarity=0.024 Sum_probs=53.1
Q ss_pred hhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhc
Q 047378 6 SVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLV 70 (87)
Q Consensus 6 ~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (87)
...+.|..| +.|++++|+......++..+++.+.+.+.+ .+....+...+.+.+++.++.++..
T Consensus 316 ~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 380 (390)
T PRK03545 316 QVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIF 380 (390)
T ss_pred HHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence 355667777 688999999999999999999999999998 7788888888888888777766654
No 100
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=97.41 E-value=7.3e-06 Score=54.10 Aligned_cols=74 Identities=15% Similarity=0.129 Sum_probs=62.8
Q ss_pred CccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh-chHHHHHHHHHHHHHHHHHHhhcccCCC
Q 047378 2 AGLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WS-RTGAFSIFWVICIVAVLFVAFLVPETKG 75 (87)
Q Consensus 2 ~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~-~~~~~~~~~~~~~~~~~~~~~~~pet~~ 75 (87)
.|+...++++.||...|+++.++.+.+...+..++-.+...+.+ .. |++.|.+-++++++..++..++.+|...
T Consensus 139 ~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~r 214 (493)
T KOG1330|consen 139 SPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPER 214 (493)
T ss_pred cccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCccc
Confidence 46677899999999999999999999988888888777777777 33 8889999999999999998888877654
No 101
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=97.40 E-value=0.0018 Score=40.78 Aligned_cols=70 Identities=19% Similarity=0.227 Sum_probs=47.5
Q ss_pred cchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hhchHHHHHHHHHHHHHHHHHHhhcccCC
Q 047378 4 LPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME---------WSRTGAFSIFWVICIVAVLFVAFLVPETK 74 (87)
Q Consensus 4 ~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~---------~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 74 (87)
....+++|.+|.+.|++..++......++..+++.+...+.. .+++..+.+.+.+.++... .....||++
T Consensus 116 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~-~~~~~~~~~ 194 (394)
T TIGR00883 116 GAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLY-LRRNLEETP 194 (394)
T ss_pred ccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHH-HHHhcCCCh
Confidence 345789999999999999999988888888888877655432 3455566655554444333 333456643
No 102
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=97.39 E-value=0.00078 Score=46.16 Aligned_cols=62 Identities=15% Similarity=0.260 Sum_probs=46.4
Q ss_pred hhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHH
Q 047378 6 SVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVA 67 (87)
Q Consensus 6 ~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~ 67 (87)
...++|+.|.|.|..+.++.....-...++++.....+.. .+|+|.|++++++..++.+..+
T Consensus 152 ~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~ 214 (599)
T PF06609_consen 152 ALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIF 214 (599)
T ss_pred HHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHH
Confidence 4568999999999998887776555555566777666555 6788999888888777766543
No 103
>PRK15011 sugar efflux transporter B; Provisional
Probab=97.37 E-value=0.0016 Score=41.88 Aligned_cols=71 Identities=14% Similarity=-0.032 Sum_probs=52.0
Q ss_pred chhhhcccCCcchHHH--HHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhcccCCC
Q 047378 5 PSVIMAEIFPINIKGS--AGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVPETKG 75 (87)
Q Consensus 5 ~~~~~~E~fp~~~R~~--~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet~~ 75 (87)
...+..|..|.+.|.. ..++......++..+++.+...+.+ .+++..|++.+...++..+..++..||.++
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~ 199 (393)
T PRK15011 126 MFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLPSMRK 199 (393)
T ss_pred HHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhcCccCC
Confidence 3455666666555543 2366777778999999999998887 688888888888888777777777787643
No 104
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=97.36 E-value=0.00083 Score=44.07 Aligned_cols=65 Identities=14% Similarity=0.111 Sum_probs=56.2
Q ss_pred hhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh---chHHHHHHHHHHHHHHHHHHhhccc
Q 047378 7 VIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WS---RTGAFSIFWVICIVAVLFVAFLVPE 72 (87)
Q Consensus 7 ~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~---~~~~~~~~~~~~~~~~~~~~~~~pe 72 (87)
.++++.||++.+++++|+.. .++++..+..++.|.+.. .+ ++.+..++....++..+..++.+.|
T Consensus 127 ~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d 195 (417)
T COG2223 127 PNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMND 195 (417)
T ss_pred ccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 56899999999999999999 999999999999999888 55 7778888888888888887776644
No 105
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=97.35 E-value=0.0016 Score=41.08 Aligned_cols=62 Identities=21% Similarity=0.307 Sum_probs=49.3
Q ss_pred cchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHH
Q 047378 4 LPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFV 66 (87)
Q Consensus 4 ~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~ 66 (87)
....+..|..|.+ |+++.++......++..+++.+.+.+.+ .++...+++.+++.+++.+..
T Consensus 308 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~ 370 (375)
T TIGR00899 308 IGMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCL 370 (375)
T ss_pred HHHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Confidence 3456788999876 5599999998999999999999999888 667777877777776666654
No 106
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=97.32 E-value=0.002 Score=42.41 Aligned_cols=70 Identities=13% Similarity=0.144 Sum_probs=56.6
Q ss_pred hhhhcccCCcchHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhcccCCC
Q 047378 6 SVIMAEIFPINIKGSAGSLVILL-HNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVPETKG 75 (87)
Q Consensus 6 ~~~~~E~fp~~~R~~~~~~~~~~-~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet~~ 75 (87)
.-|+++.+|+|..++...+.... ..++.++.+...+.+.+ .+....|++++.+.+...++..+.+++.+.
T Consensus 334 fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~~~ 405 (412)
T PF01306_consen 334 FKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKDKK 405 (412)
T ss_dssp HHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SSS
T ss_pred HHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCCCc
Confidence 35899999999999999997544 57888999999999999 677789999999988888888887766554
No 107
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=97.31 E-value=0.0025 Score=40.12 Aligned_cols=72 Identities=11% Similarity=0.059 Sum_probs=53.3
Q ss_pred cchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------hhchHHHHHHHHHHHHHHHH-
Q 047378 4 LPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-----------------WSRTGAFSIFWVICIVAVLF- 65 (87)
Q Consensus 4 ~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-----------------~~~~~~~~~~~~~~~~~~~~- 65 (87)
....|++++.|.+.+++.+++...++.++..++|.+...+.. ..+..+|++.+.+..+..+.
T Consensus 30 ~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~yl~ia~~~~~~~i~~ 109 (310)
T TIGR01272 30 AANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAEAAKVHTPYLLLAGALAVLAIIF 109 (310)
T ss_pred hHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999999999999999999999999987763 24556677666655554443
Q ss_pred HHhhcccCCC
Q 047378 66 VAFLVPETKG 75 (87)
Q Consensus 66 ~~~~~pet~~ 75 (87)
.+...||.+.
T Consensus 110 ~~~~~p~~~~ 119 (310)
T TIGR01272 110 AFLPLPELQE 119 (310)
T ss_pred HHccCCCCCc
Confidence 3344576544
No 108
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=97.27 E-value=0.00014 Score=47.75 Aligned_cols=62 Identities=19% Similarity=0.119 Sum_probs=49.8
Q ss_pred cchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-hchHHHHHHHHHHHHHHHH
Q 047378 4 LPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-W-SRTGAFSIFWVICIVAVLF 65 (87)
Q Consensus 4 ~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~-~~~~~~~~~~~~~~~~~~~ 65 (87)
..+.+..|.+|.+.|++++|+......+++.++|.+...+.+ . ++...|++.+++.+++.++
T Consensus 353 ~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~~ 416 (455)
T TIGR00892 353 LLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGLF 416 (455)
T ss_pred HHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHHH
Confidence 456778899999999999999999999999999999998887 4 3566777766666555543
No 109
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=97.18 E-value=0.0023 Score=42.53 Aligned_cols=70 Identities=19% Similarity=0.237 Sum_probs=55.5
Q ss_pred CccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhcc
Q 047378 2 AGLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVP 71 (87)
Q Consensus 2 ~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~p 71 (87)
.|....+++|..|.+.|++.+|+......+++.+++.+.....+ .++.+.|...++..++..+..++..|
T Consensus 399 ~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (475)
T TIGR00924 399 SPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP 469 (475)
T ss_pred hHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 35667889999999999999999999999999999888877655 55666777777777776666655444
No 110
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=97.18 E-value=0.00026 Score=46.49 Aligned_cols=69 Identities=12% Similarity=0.027 Sum_probs=50.7
Q ss_pred ccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hchHHHHHHHHHHHHHHHHHHhhcc
Q 047378 3 GLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMMEW----SRTGAFSIFWVICIVAVLFVAFLVP 71 (87)
Q Consensus 3 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~p 71 (87)
|....+++|.+|.+.|++++|+......+++.+++.+...+... +++..|.+.+.+.++..+..+++.+
T Consensus 141 ~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~ 213 (467)
T PRK09556 141 PCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGS 213 (467)
T ss_pred hHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCC
Confidence 45567899999999999999999888888888888877665542 3555666667666666555555443
No 111
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=97.16 E-value=0.0051 Score=41.15 Aligned_cols=59 Identities=14% Similarity=0.210 Sum_probs=45.9
Q ss_pred ccchhhhcccCCcch--HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHH
Q 047378 3 GLPSVIMAEIFPINI--KGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIV 61 (87)
Q Consensus 3 ~~~~~~~~E~fp~~~--R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~ 61 (87)
|....+.+|.||.+. |+.+.++.+...++++.++|.+.+.+.+ .++++.|.+.++...+
T Consensus 131 ~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i 192 (500)
T PRK09584 131 ANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLI 192 (500)
T ss_pred CCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHH
Confidence 445578999998653 4567888888999999999999999988 6788888776654444
No 112
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=97.11 E-value=0.0051 Score=41.10 Aligned_cols=76 Identities=16% Similarity=0.141 Sum_probs=65.8
Q ss_pred cchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhcccCCCCCHH
Q 047378 4 LPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVPETKGRTLE 79 (87)
Q Consensus 4 ~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~~ 79 (87)
..++|.++....+.|....|+...+.+.+..++|.+...... .+...++++-++..++..++..+++||+...+.+
T Consensus 132 ~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~ 208 (463)
T KOG2816|consen 132 VGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKER 208 (463)
T ss_pred hhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcccc
Confidence 356889999999999999999999999999999999998888 6777788888888899899999999998665544
No 113
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=97.09 E-value=0.0063 Score=39.67 Aligned_cols=68 Identities=12% Similarity=0.098 Sum_probs=50.4
Q ss_pred hhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------hhchHHHHHHHHH
Q 047378 6 SVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME---------------------------WSRTGAFSIFWVI 58 (87)
Q Consensus 6 ~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~---------------------------~~~~~~~~~~~~~ 58 (87)
..++.|..|.+.|++..++....+.++..+++.+.+.+.. .+++..|.+.+.+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~ 195 (410)
T TIGR00885 116 NPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAV 195 (410)
T ss_pred hHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788999999999999999999999999988776642 2366778777776
Q ss_pred HHHHHHHHH-hhcccC
Q 047378 59 CIVAVLFVA-FLVPET 73 (87)
Q Consensus 59 ~~~~~~~~~-~~~pet 73 (87)
.++..++.. ...||.
T Consensus 196 ~~~~~~~~~~~~~p~~ 211 (410)
T TIGR00885 196 VLAVALLIMLTKMPAL 211 (410)
T ss_pred HHHHHHHHHHhcCCCC
Confidence 666555443 335653
No 114
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=97.08 E-value=0.0042 Score=41.56 Aligned_cols=67 Identities=19% Similarity=0.294 Sum_probs=46.2
Q ss_pred chhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h--hchHHHHHHHHHHHHHHHHHHhhcccC
Q 047378 5 PSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-W--SRTGAFSIFWVICIVAVLFVAFLVPET 73 (87)
Q Consensus 5 ~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~--~~~~~~~~~~~~~~~~~~~~~~~~pet 73 (87)
...|++|+-|++.|+.-.+.......++..++ ++...... . +|+..+.+..+.+++..+. .++.||+
T Consensus 163 ~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pes 232 (513)
T KOG0254|consen 163 APVYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPES 232 (513)
T ss_pred chhhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCC
Confidence 45899999999999999999887777444444 55554444 2 4555555555555555555 6778986
No 115
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=97.03 E-value=0.0086 Score=38.62 Aligned_cols=57 Identities=9% Similarity=0.022 Sum_probs=43.5
Q ss_pred chhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-hchHHHHHHHHHHHHH
Q 047378 5 PSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-W-SRTGAFSIFWVICIVA 62 (87)
Q Consensus 5 ~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~-~~~~~~~~~~~~~~~~ 62 (87)
...++.|.+| +.|++.+++.......+..+++.+.+.+.+ . +|+..+.+++...++.
T Consensus 118 ~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~ 176 (393)
T PRK09705 118 MPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVA 176 (393)
T ss_pred hhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 4467888898 779999999998888888999998888777 3 5666666655554443
No 116
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=97.03 E-value=0.0073 Score=38.99 Aligned_cols=61 Identities=20% Similarity=0.380 Sum_probs=49.2
Q ss_pred hhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHh
Q 047378 7 VIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAF 68 (87)
Q Consensus 7 ~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~ 68 (87)
...+|..| +.|+++.|+......+++.++|.+...+.+ .+....+++.+++.++..+...+
T Consensus 338 ~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~ 399 (402)
T TIGR00897 338 AVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAF 399 (402)
T ss_pred HHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 34567766 579999999999999999999999999988 67777888888777776665443
No 117
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=97.03 E-value=0.00041 Score=46.50 Aligned_cols=72 Identities=17% Similarity=0.068 Sum_probs=62.1
Q ss_pred ccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhhchHHHHHHHHHHHHHHHHHHhhcccCC
Q 047378 3 GLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMM-------EWSRTGAFSIFWVICIVAVLFVAFLVPETK 74 (87)
Q Consensus 3 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~-------~~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 74 (87)
|..-.+++-.|..+.|++-+|+..+.+.+++++++++...+. ..+|++.|.+-+++.++..+++++++|+..
T Consensus 153 P~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P 231 (495)
T KOG2533|consen 153 PGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNP 231 (495)
T ss_pred hHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCCh
Confidence 334477899999999999999999999999999999988853 257889999999999999999888888753
No 118
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=97.02 E-value=0.005 Score=41.22 Aligned_cols=72 Identities=15% Similarity=0.376 Sum_probs=57.6
Q ss_pred chhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh-chHHHHHHHHHHHHHHHHHHhhcccCCCCC
Q 047378 5 PSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WS-RTGAFSIFWVICIVAVLFVAFLVPETKGRT 77 (87)
Q Consensus 5 ~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~-~~~~~~~~~~~~~~~~~~~~~~~pet~~~~ 77 (87)
.-++.+|+.|....+.-.|+....++..++++|.++..+.+ .+ .+..+....++.+++.++. ..+++.|++.
T Consensus 401 sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll-~~v~~~~g~~ 474 (477)
T PF11700_consen 401 SRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILL-FFVDVEKGRE 474 (477)
T ss_pred HHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH-hhccchhhhh
Confidence 44789999999999999999999999999999999999998 44 5566666666666666665 4467766654
No 119
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=97.01 E-value=0.0021 Score=41.09 Aligned_cols=65 Identities=9% Similarity=-0.005 Sum_probs=54.0
Q ss_pred hhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhcc
Q 047378 7 VIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVP 71 (87)
Q Consensus 7 ~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~p 71 (87)
.+..+..|.+.|++..++......++..+++.+...+.+ .++...|.+.+++.++..++.++..+
T Consensus 334 ~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~ 399 (408)
T PRK09874 334 TLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNSLR 399 (408)
T ss_pred HHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677899999999999999999999999999998887 67888888888888888777665443
No 120
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=97.00 E-value=0.0038 Score=40.30 Aligned_cols=47 Identities=9% Similarity=-0.046 Sum_probs=33.8
Q ss_pred hhhcccCCcchHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-hhchHHHH
Q 047378 7 VIMAEIFPINIKGSAGSLVILLHNCGN-WIVTCTFHFMME-WSRTGAFS 53 (87)
Q Consensus 7 ~~~~E~fp~~~R~~~~~~~~~~~~~~~-~~~~~~~~~l~~-~~~~~~~~ 53 (87)
.++.|.+|.+.|++++|+......++. ..++.+...+.+ .++...++
T Consensus 128 ~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~ 176 (402)
T TIGR00897 128 VWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLW 176 (402)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHH
Confidence 456788999999999999998887775 466766666555 44333333
No 121
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=97.00 E-value=0.006 Score=40.56 Aligned_cols=61 Identities=15% Similarity=0.233 Sum_probs=48.5
Q ss_pred ccchhhhcccCCcch---HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHH
Q 047378 3 GLPSVIMAEIFPINI---KGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAV 63 (87)
Q Consensus 3 ~~~~~~~~E~fp~~~---R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~ 63 (87)
|....+.+|.+|.+. |+++.++.+...+++..+++.+.+.+.+ .+++..|.+.++..++..
T Consensus 121 ~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~ 185 (475)
T TIGR00924 121 ANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGL 185 (475)
T ss_pred CCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence 445578899998764 8899999999999999999999999888 577778877665444443
No 122
>PRK12382 putative transporter; Provisional
Probab=96.97 E-value=0.0072 Score=38.69 Aligned_cols=50 Identities=4% Similarity=-0.269 Sum_probs=39.0
Q ss_pred hhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHH
Q 047378 6 SVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIF 55 (87)
Q Consensus 6 ~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~ 55 (87)
..+..|.+|.+.|++++|+.......+..+++.+.+.+.+ .++...+.+.
T Consensus 134 ~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~ 184 (392)
T PRK12382 134 LTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTT 184 (392)
T ss_pred HHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHH
Confidence 3567899999999999999888888888888888887776 5555444443
No 123
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=96.95 E-value=0.009 Score=38.30 Aligned_cols=66 Identities=14% Similarity=0.101 Sum_probs=49.8
Q ss_pred hhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhccc
Q 047378 7 VIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVPE 72 (87)
Q Consensus 7 ~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pe 72 (87)
.+..|..+.+.|+...+.......++..+++.....+.+ .+++..|++.++..++..+...+..||
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~~~~ 186 (390)
T TIGR02718 120 GMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWLKDR 186 (390)
T ss_pred HHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 456788888888888777776667888888887777777 688889998888887766665554444
No 124
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=96.93 E-value=0.0053 Score=39.33 Aligned_cols=57 Identities=7% Similarity=-0.158 Sum_probs=42.9
Q ss_pred chhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHH
Q 047378 5 PSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIV 61 (87)
Q Consensus 5 ~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~ 61 (87)
...+..|.+|.+.|+++.++.......+..+++.+...+.+ .+++..+++.....++
T Consensus 133 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~ 190 (399)
T PRK05122 133 SILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALL 190 (399)
T ss_pred HHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 44567899999999999999887778888888888888777 5666666555444433
No 125
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.92 E-value=0.00061 Score=44.82 Aligned_cols=72 Identities=13% Similarity=0.219 Sum_probs=62.3
Q ss_pred chhhhcccCCcch-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhcccCCCC
Q 047378 5 PSVIMAEIFPINI-KGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVPETKGR 76 (87)
Q Consensus 5 ~~~~~~E~fp~~~-R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~ 76 (87)
..+++++.||.+. |++++|+.-....++-.++|-.-+.+++ .+...+|.++++++++-..+..+.++.++..
T Consensus 180 glamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~ 253 (464)
T KOG3764|consen 180 GLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMD 253 (464)
T ss_pred hHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccC
Confidence 3467889999988 6999999999999999999999999999 8999999999999999999887766554433
No 126
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=96.91 E-value=0.00091 Score=43.86 Aligned_cols=41 Identities=12% Similarity=0.068 Sum_probs=36.1
Q ss_pred chhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047378 5 PSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME 45 (87)
Q Consensus 5 ~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~ 45 (87)
.-++++|+++.+.|+++++.......++.+++|.+-.++..
T Consensus 141 ~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 141 IRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred HHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 34789999999999999999999998998898888887665
No 127
>PTZ00207 hypothetical protein; Provisional
Probab=96.85 E-value=0.011 Score=40.71 Aligned_cols=65 Identities=12% Similarity=0.231 Sum_probs=48.8
Q ss_pred hhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhcc
Q 047378 6 SVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMMEWSRTGAFSIFWVICIVAVLFVAFLVP 71 (87)
Q Consensus 6 ~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p 71 (87)
...+.+.|| +.|++++|+......+++.+.+.+...+...++...+++.+.+.++..++.+.+++
T Consensus 142 ~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~~~~~fl~l~vl~~vv~ll~~~~vr 206 (591)
T PTZ00207 142 VVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSDNTSAYFFFLMSFALVVGILAIVFMR 206 (591)
T ss_pred HHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhee
Confidence 345778887 78999999999999999887666655555555667788888888887776666553
No 128
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=96.83 E-value=0.0033 Score=39.87 Aligned_cols=44 Identities=14% Similarity=0.208 Sum_probs=39.7
Q ss_pred cchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh
Q 047378 4 LPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WS 47 (87)
Q Consensus 4 ~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~ 47 (87)
+.+.+++|.+|++.|+++.|+......++..++|.+.+.+.+ .+
T Consensus 348 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g 392 (405)
T TIGR00891 348 ILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLD 392 (405)
T ss_pred hHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 455788999999999999999999999999999999999988 44
No 129
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=96.78 E-value=0.0015 Score=42.39 Aligned_cols=52 Identities=6% Similarity=-0.007 Sum_probs=42.2
Q ss_pred hhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh-chHHHHHHHH
Q 047378 6 SVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WS-RTGAFSIFWV 57 (87)
Q Consensus 6 ~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~-~~~~~~~~~~ 57 (87)
+....|.+|++.|+++.|+.....+++++++|.+.+.+.+ .+ +...+++.++
T Consensus 355 ~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~ 408 (412)
T TIGR02332 355 WTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAA 408 (412)
T ss_pred HhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHH
Confidence 3556789999999999999999999999999999998888 43 5555554433
No 130
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=96.78 E-value=0.015 Score=37.66 Aligned_cols=42 Identities=12% Similarity=0.203 Sum_probs=33.7
Q ss_pred cchhhhcccCC-------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047378 4 LPSVIMAEIFP-------INIKGSAGSLVILLHNCGNWIVTCTFHFMME 45 (87)
Q Consensus 4 ~~~~~~~E~fp-------~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~ 45 (87)
..+++.+|..+ .+.+++..|+......++..+++.+.+.+.+
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~ 379 (437)
T TIGR00792 331 LVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILG 379 (437)
T ss_pred HHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567777754 5567888899998999999999999998876
No 131
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=96.70 E-value=0.014 Score=37.72 Aligned_cols=68 Identities=12% Similarity=0.095 Sum_probs=47.5
Q ss_pred hhhcccC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hhchHHHHHHHHHHHHHHHHHHhhcccCC
Q 047378 7 VIMAEIF-PINIKGSAGSLVILLHNCGNWIVTCTFHFMME--------WSRTGAFSIFWVICIVAVLFVAFLVPETK 74 (87)
Q Consensus 7 ~~~~E~f-p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~--------~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 74 (87)
++.+|+. +.+.|++..++......+++.+++.+.+.+.. .++...+.+.+++..+..++.++..+|.+
T Consensus 122 al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~ 198 (437)
T TIGR00792 122 SLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERY 198 (437)
T ss_pred hCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecC
Confidence 5667876 57889999998887777777776666554442 24555677777777777766666677754
No 132
>PRK03633 putative MFS family transporter protein; Provisional
Probab=96.68 E-value=0.019 Score=36.72 Aligned_cols=66 Identities=11% Similarity=0.105 Sum_probs=49.5
Q ss_pred ccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHh
Q 047378 3 GLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAF 68 (87)
Q Consensus 3 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~ 68 (87)
|.......|..|.+.+....+.......++..++|.+...+.+ .+..+.|.+.+.+.++..+..++
T Consensus 304 p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~ 370 (381)
T PRK03633 304 PVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLMLLR 370 (381)
T ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHh
Confidence 3445667888988887777777777778999999999999888 66777777777777665555433
No 133
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=96.67 E-value=0.0081 Score=38.90 Aligned_cols=44 Identities=14% Similarity=0.026 Sum_probs=38.7
Q ss_pred ccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047378 3 GLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMMEW 46 (87)
Q Consensus 3 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 46 (87)
|....+..|..|.+.|+++.|+......++..+++.+.+.+.+.
T Consensus 316 p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~ 359 (400)
T PRK11646 316 PARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDL 359 (400)
T ss_pred ccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHH
Confidence 34457788999999999999999998999999999999998883
No 134
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=96.63 E-value=0.025 Score=38.31 Aligned_cols=47 Identities=9% Similarity=0.007 Sum_probs=40.2
Q ss_pred chhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHH
Q 047378 5 PSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMMEWSRTGA 51 (87)
Q Consensus 5 ~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 51 (87)
.+.+++..+|.+.|+++.|+..+...++.++++.+.+.+...+|+..
T Consensus 135 ~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~s~gWr~y 181 (511)
T TIGR00806 135 YSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVTLGWISY 181 (511)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhH
Confidence 35789999999999999999999999999999999998554655544
No 135
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=96.63 E-value=0.0021 Score=40.25 Aligned_cols=44 Identities=18% Similarity=0.349 Sum_probs=38.9
Q ss_pred chhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhc
Q 047378 5 PSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSR 48 (87)
Q Consensus 5 ~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~ 48 (87)
.+.+.+|.+|.+.|+++.|+......+++.+++.+.+.+.+ .++
T Consensus 331 ~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~ 375 (379)
T TIGR00881 331 IGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGW 375 (379)
T ss_pred HHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhcc
Confidence 34678999999999999999999999999999999999888 444
No 136
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=96.58 E-value=0.034 Score=35.12 Aligned_cols=56 Identities=11% Similarity=0.092 Sum_probs=40.2
Q ss_pred chhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh--chHHHHHHHHHHHH
Q 047378 5 PSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WS--RTGAFSIFWVICIV 61 (87)
Q Consensus 5 ~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~--~~~~~~~~~~~~~~ 61 (87)
...++.|.+| +.|+++.|+......++..+++.+.+.+.+ .+ ++..|...+...++
T Consensus 108 ~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~ 166 (355)
T TIGR00896 108 LPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALL 166 (355)
T ss_pred chHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 3456788887 679999999998888888888888877766 32 55556555544433
No 137
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=96.52 E-value=0.0031 Score=39.71 Aligned_cols=45 Identities=16% Similarity=0.169 Sum_probs=36.0
Q ss_pred ccchhhhcccCCcchHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-hh
Q 047378 3 GLPSVIMAEIFPINIKGSAGSLVILLH-NCGNWIVTCTFHFMME-WS 47 (87)
Q Consensus 3 ~~~~~~~~E~fp~~~R~~~~~~~~~~~-~~~~~~~~~~~~~l~~-~~ 47 (87)
+....+++|.+|.+.|+++.++..... .++..++|.+.+.+.+ .+
T Consensus 331 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g 377 (394)
T TIGR00883 331 GPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTG 377 (394)
T ss_pred hhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcC
Confidence 345678899999999999999865554 5677799999998888 44
No 138
>PRK11010 ampG muropeptide transporter; Validated
Probab=96.42 E-value=0.024 Score=37.89 Aligned_cols=68 Identities=10% Similarity=0.107 Sum_probs=52.8
Q ss_pred chhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhcccC
Q 047378 5 PSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVPET 73 (87)
Q Consensus 5 ~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet 73 (87)
.+++..++.|.+.+++..++......++..+++.+.+.+.+ .++...|.+.+++.+.+.+...+ ++++
T Consensus 337 ~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~-~~~~ 405 (491)
T PRK11010 337 FVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLV-CRQT 405 (491)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH-HHhc
Confidence 45677899999999999999999998988888888888888 66666777777777776665544 3443
No 139
>PRK10054 putative transporter; Provisional
Probab=96.40 E-value=0.024 Score=36.72 Aligned_cols=65 Identities=18% Similarity=0.079 Sum_probs=47.4
Q ss_pred ccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHh
Q 047378 3 GLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAF 68 (87)
Q Consensus 3 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~ 68 (87)
|....++.+.-|++.|++..+... ..+++..++|.....+.+ .+....|.+.+.+.++..++..+
T Consensus 317 p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 382 (395)
T PRK10054 317 PGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLMLK 382 (395)
T ss_pred hhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHHh
Confidence 344567788899999999988654 677899999999999999 54555666665555555555443
No 140
>PRK10504 putative transporter; Provisional
Probab=96.39 E-value=0.016 Score=38.04 Aligned_cols=40 Identities=15% Similarity=0.186 Sum_probs=35.0
Q ss_pred hhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047378 6 SVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME 45 (87)
Q Consensus 6 ~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~ 45 (87)
..+..+..|.+.|+++.|+......++..+++.+.+.+.+
T Consensus 375 ~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~ 414 (471)
T PRK10504 375 NTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLG 414 (471)
T ss_pred HHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567789999999999999999999999999998887766
No 141
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=96.35 E-value=0.02 Score=41.45 Aligned_cols=67 Identities=16% Similarity=0.269 Sum_probs=43.3
Q ss_pred chhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hchHHHHHHHHHHHHHHHHHHhhcc
Q 047378 5 PSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMMEW--SRTGAFSIFWVICIVAVLFVAFLVP 71 (87)
Q Consensus 5 ~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~p 71 (87)
..+++.|..|.+.|++++|+......++..+++.+...+... .....+++.+.+.++..++.....|
T Consensus 343 ~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (1146)
T PRK08633 343 LNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTLIGTLYTLLLLP 411 (1146)
T ss_pred HHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 457788999999999999999988888877666665554432 2333455544444444443333333
No 142
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=96.02 E-value=0.057 Score=34.64 Aligned_cols=58 Identities=16% Similarity=0.240 Sum_probs=44.6
Q ss_pred hhhcccCCc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHH
Q 047378 7 VIMAEIFPI-NIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVL 64 (87)
Q Consensus 7 ~~~~E~fp~-~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~ 64 (87)
....+..+. +.|++.+++......++..+++.+.+.+.+ .+....|...+.+.+++..
T Consensus 326 ~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~ 385 (390)
T TIGR02718 326 TAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL 385 (390)
T ss_pred HHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 344555665 899999999999999999999999999998 5666777666655555443
No 143
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=96.01 E-value=0.12 Score=34.55 Aligned_cols=40 Identities=20% Similarity=0.241 Sum_probs=36.3
Q ss_pred hhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047378 6 SVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME 45 (87)
Q Consensus 6 ~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~ 45 (87)
..++++..|.+.+++..++..+...++..+++.+...+.+
T Consensus 373 ~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~ 412 (468)
T TIGR00788 373 LVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLME 412 (468)
T ss_pred HHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778999999999999999999999999999988777776
No 144
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=96.00 E-value=7.5e-05 Score=48.47 Aligned_cols=70 Identities=19% Similarity=0.219 Sum_probs=44.6
Q ss_pred ccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh---chHHHHHHHHHHHHHHHHHHhhcccC
Q 047378 3 GLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WS---RTGAFSIFWVICIVAVLFVAFLVPET 73 (87)
Q Consensus 3 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~---~~~~~~~~~~~~~~~~~~~~~~~pet 73 (87)
+...+|+.|..|++.|++..++......++..++..+...... .. |+..+.+-++..++ ..+...++||+
T Consensus 121 ~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~-~~~~~~~~pES 194 (451)
T PF00083_consen 121 VVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLL-VLLLRFFLPES 194 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc
Confidence 3456899999999999999888876666666666655544433 22 44444444334433 34445668987
No 145
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=95.96 E-value=0.063 Score=36.52 Aligned_cols=70 Identities=13% Similarity=0.172 Sum_probs=51.6
Q ss_pred hhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHH-hhcccCCC
Q 047378 6 SVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVA-FLVPETKG 75 (87)
Q Consensus 6 ~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~-~~~pet~~ 75 (87)
.+...+..|.+.|++..|+..+....+..++..+.+.+.+ .+....+.+.++..++..++.. ..+++.+.
T Consensus 329 ~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~~~~l~~~~~ 400 (524)
T PF05977_consen 329 NTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIALRFPLRQGEE 400 (524)
T ss_pred HHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcCccccc
Confidence 3567789999999999999999999999999999999888 6666666665555555544433 23444443
No 146
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=95.96 E-value=0.021 Score=38.62 Aligned_cols=60 Identities=17% Similarity=0.269 Sum_probs=52.5
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhcc
Q 047378 12 IFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVP 71 (87)
Q Consensus 12 ~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~p 71 (87)
.|..|.|+.++|++.+...++.++.+.+..++.+ .+|++.+++++.+.+-..+.....-|
T Consensus 162 ~YF~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp 222 (509)
T KOG2504|consen 162 TYFEKKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRP 222 (509)
T ss_pred hHhHHHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCC
Confidence 6778899999999999999999999999999888 89999999999998777777666555
No 147
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=95.87 E-value=0.028 Score=36.01 Aligned_cols=65 Identities=12% Similarity=0.004 Sum_probs=44.9
Q ss_pred hhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhcccC
Q 047378 6 SVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVPET 73 (87)
Q Consensus 6 ~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet 73 (87)
.++..+. .+.|+++.+..+..+.++..++|.+...+.+ .+++..|++.+...++..+. .+..||.
T Consensus 116 ~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~~~-~~~~~~~ 181 (382)
T PRK11128 116 DALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASMLLG-QLLRPTI 181 (382)
T ss_pred HHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHH-HHccCCC
Confidence 3444444 3457788888888889999999999999888 68888887766544443333 3344654
No 148
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=95.87 E-value=0.085 Score=35.56 Aligned_cols=69 Identities=12% Similarity=0.081 Sum_probs=48.2
Q ss_pred hhhhcccCCcchHH--HHHHHHHHHHHHHHHHHHHHHHHHH--H--------------hhchHHHHHHHHHHHHHHHHHH
Q 047378 6 SVIMAEIFPINIKG--SAGSLVILLHNCGNWIVTCTFHFMM--E--------------WSRTGAFSIFWVICIVAVLFVA 67 (87)
Q Consensus 6 ~~~~~E~fp~~~R~--~~~~~~~~~~~~~~~~~~~~~~~l~--~--------------~~~~~~~~~~~~~~~~~~~~~~ 67 (87)
-++++|+.|.+.|. .+.++......+++.+++.+..... . ......|++-+++.+++..+..
T Consensus 136 rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~ 215 (477)
T TIGR01301 136 RAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIAL 215 (477)
T ss_pred HHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHe
Confidence 36899999999774 6777777777787777777654431 1 1334567777777777777777
Q ss_pred hhcccCC
Q 047378 68 FLVPETK 74 (87)
Q Consensus 68 ~~~pet~ 74 (87)
+..+|..
T Consensus 216 ~~v~E~~ 222 (477)
T TIGR01301 216 SAVKENP 222 (477)
T ss_pred eeeeccC
Confidence 7788864
No 149
>PRK03633 putative MFS family transporter protein; Provisional
Probab=95.83 E-value=0.068 Score=34.22 Aligned_cols=39 Identities=5% Similarity=-0.097 Sum_probs=33.2
Q ss_pred hhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047378 7 VIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME 45 (87)
Q Consensus 7 ~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~ 45 (87)
....+..|.+.|++++++......++..+++.+...+.+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~ 155 (381)
T PRK03633 117 SALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVST 155 (381)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 345688899999999999998889999999998887765
No 150
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=95.83 E-value=0.1 Score=33.56 Aligned_cols=59 Identities=17% Similarity=0.066 Sum_probs=45.4
Q ss_pred hhhhcccCCcchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 047378 6 SVIMAEIFPINIKGSAGSLVIL-LHNCGNWIVTCTFHFMMEWSRTGAFSIFWVICIVAVLF 65 (87)
Q Consensus 6 ~~~~~E~fp~~~R~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 65 (87)
..++++. |.+.|++++++... ...++..+++.+.+.+.+......|+..+.+.+++.++
T Consensus 315 ~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 315 MRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGAGTFVFMAIIAAAAFFL 374 (382)
T ss_pred HHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 3567777 99999999999754 45688889999999999843457788877777765444
No 151
>PF13347 MFS_2: MFS/sugar transport protein
Probab=95.82 E-value=0.037 Score=36.07 Aligned_cols=66 Identities=14% Similarity=0.256 Sum_probs=50.1
Q ss_pred hhhcccCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-------hchHHHHHHHHHHHHHHHHHHhhccc
Q 047378 7 VIMAEIFP-INIKGSAGSLVILLHNCGNWIVTCTFHFMME-W-------SRTGAFSIFWVICIVAVLFVAFLVPE 72 (87)
Q Consensus 7 ~~~~E~fp-~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~-------~~~~~~~~~~~~~~~~~~~~~~~~pe 72 (87)
++.+|+.+ .+.|.+..+.......+++.+...+.+.+.+ . ++....++.+++.++..+...+..+|
T Consensus 126 al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke 200 (428)
T PF13347_consen 126 ALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKE 200 (428)
T ss_pred hcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeee
Confidence 67889998 4689999999988888888777777776554 2 34556677777777777777777788
No 152
>TIGR00895 2A0115 benzoate transport.
Probab=95.81 E-value=0.016 Score=36.54 Aligned_cols=41 Identities=17% Similarity=0.197 Sum_probs=35.5
Q ss_pred ccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047378 3 GLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFM 43 (87)
Q Consensus 3 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l 43 (87)
+..+.+.+|.+|.+.|+++.|+......++..++|.+.+.+
T Consensus 357 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 357 SGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 34567899999999999999999999999999999887654
No 153
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=95.80 E-value=0.047 Score=37.14 Aligned_cols=63 Identities=17% Similarity=0.165 Sum_probs=50.8
Q ss_pred ccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHH
Q 047378 3 GLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLF 65 (87)
Q Consensus 3 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~ 65 (87)
|.-.++++|+.|.+....+.++.....++...++|.+.+.+.. .+....|.+.+...++....
T Consensus 122 PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~ 185 (524)
T PF05977_consen 122 PAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILA 185 (524)
T ss_pred HHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445789999999999999999999999999999999998887 67777777766655554433
No 154
>PRK11462 putative transporter; Provisional
Probab=95.68 E-value=0.18 Score=33.55 Aligned_cols=67 Identities=16% Similarity=0.198 Sum_probs=43.3
Q ss_pred hhhcccCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh-------chHHHHHHHHHHHHHHHHHHhhcccC
Q 047378 7 VIMAEIFP-INIKGSAGSLVILLHNCGNWIVTCTFHFMME-WS-------RTGAFSIFWVICIVAVLFVAFLVPET 73 (87)
Q Consensus 7 ~~~~E~fp-~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~-------~~~~~~~~~~~~~~~~~~~~~~~pet 73 (87)
++.+|+-+ .+.|++..++-...+.+++.+++.+...+.. .+ +.....+++++.+++....+...+|.
T Consensus 132 al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~~~~kE~ 207 (460)
T PRK11462 132 ALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCFFTTKER 207 (460)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHhcceec
Confidence 66778877 7889999999988888887777776554444 22 23334455555555554544445554
No 155
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=95.65 E-value=0.01 Score=39.76 Aligned_cols=66 Identities=15% Similarity=0.145 Sum_probs=43.9
Q ss_pred CccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH----------H-hhchHHHHHHHHHHHHHHHHHH
Q 047378 2 AGLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMM----------E-WSRTGAFSIFWVICIVAVLFVA 67 (87)
Q Consensus 2 ~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~----------~-~~~~~~~~~~~~~~~~~~~~~~ 67 (87)
.|....++.+..|.+.|++.+|+......+++.++..+..... . .+....|...++..++..+..+
T Consensus 400 ~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~ 476 (500)
T PRK09584 400 SGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLML 476 (500)
T ss_pred hHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 4566788899999999999999887777777777666654221 0 1234566666666555444433
No 156
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=95.63 E-value=0.028 Score=35.07 Aligned_cols=43 Identities=7% Similarity=-0.037 Sum_probs=38.0
Q ss_pred ccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047378 3 GLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME 45 (87)
Q Consensus 3 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~ 45 (87)
+....+..|..|.+.|+++.|+......++..+++.+.+.+.+
T Consensus 320 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~ 362 (365)
T TIGR00900 320 VPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLAD 362 (365)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788999999999999999999999999999999888776
No 157
>PRK03699 putative transporter; Provisional
Probab=95.59 E-value=0.041 Score=35.44 Aligned_cols=59 Identities=5% Similarity=0.037 Sum_probs=44.9
Q ss_pred hhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHH
Q 047378 7 VIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFV 66 (87)
Q Consensus 7 ~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~ 66 (87)
.+..|..|.+ +++..|.......++..++|.+.+.+.+ .+....++..+++.++..+..
T Consensus 317 ~~~~~~~~~~-~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~ 376 (394)
T PRK03699 317 TLGSQQTKVA-SPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMC 376 (394)
T ss_pred HHHHHHccCC-CHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHH
Confidence 4566766644 6778888888888999999999999988 677777777777766665543
No 158
>PRK09528 lacY galactoside permease; Reviewed
Probab=95.47 E-value=0.054 Score=35.12 Aligned_cols=56 Identities=9% Similarity=0.053 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhccc
Q 047378 17 IKGSAGSLVILLHNCGNWIVTCTFHFMMEWSRTGAFSIFWVICIVAVLFVAFLVPE 72 (87)
Q Consensus 17 ~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~pe 72 (87)
.|++..|.......++..+++.+.+.+.+.+++..|++.+...++..+..++..+|
T Consensus 138 ~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 193 (420)
T PRK09528 138 RSGFEYGRARMWGSLGWALCAFIAGILFNINPQINFWLGSGSALILLVLLFFAKPD 193 (420)
T ss_pred hccccchhhHHhhhHHHHHHHHHHHHHHhcCchHhHHHHHHHHHHHHHHHhccccc
Confidence 34556677777788888999999888877677788887777777666665554444
No 159
>PRK09669 putative symporter YagG; Provisional
Probab=95.42 E-value=0.4 Score=31.47 Aligned_cols=67 Identities=16% Similarity=0.127 Sum_probs=42.0
Q ss_pred hhhcccC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-------hchHHHHHHHHHHHHHHHHHHhhcccC
Q 047378 7 VIMAEIF-PINIKGSAGSLVILLHNCGNWIVTCTFHFMME-W-------SRTGAFSIFWVICIVAVLFVAFLVPET 73 (87)
Q Consensus 7 ~~~~E~f-p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~-------~~~~~~~~~~~~~~~~~~~~~~~~pet 73 (87)
++.+|+. +.+.|.+..++......+++.+++.+...+.. . ++...+.+++++.++..+..++..+|.
T Consensus 132 al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~~~~~e~ 207 (444)
T PRK09669 132 AMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCCFFMTKER 207 (444)
T ss_pred HhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHhCCeEEe
Confidence 5678877 55789988888888888877777665544333 2 223345556666655555555544553
No 160
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=95.31 E-value=0.057 Score=34.68 Aligned_cols=52 Identities=12% Similarity=0.042 Sum_probs=40.0
Q ss_pred chhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHH
Q 047378 5 PSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVI 58 (87)
Q Consensus 5 ~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~ 58 (87)
...+..|. .+.|++..|..+....++..+++.+...+.+ .+++..|.+.+..
T Consensus 115 ~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~ 167 (382)
T TIGR00902 115 GDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAG 167 (382)
T ss_pred HHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHH
Confidence 33444442 4678889999999999999999999998888 6777777766554
No 161
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=95.18 E-value=0.072 Score=38.88 Aligned_cols=57 Identities=5% Similarity=-0.113 Sum_probs=42.1
Q ss_pred chhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhchHHHHHHHHHHHH
Q 047378 5 PSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME--WSRTGAFSIFWVICIV 61 (87)
Q Consensus 5 ~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~ 61 (87)
..+++.+..|.+.|++.+|+....+.++..+++.+...+.. .+....+++.+...++
T Consensus 355 ~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~ 413 (1140)
T PRK06814 355 LFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIILFIALANLI 413 (1140)
T ss_pred HHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999988888765 2333344444433333
No 162
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=95.17 E-value=0.37 Score=31.98 Aligned_cols=70 Identities=26% Similarity=0.346 Sum_probs=49.1
Q ss_pred hhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh--------chHHHHHHHHHHHHHHHHHHhhcccCCCCC
Q 047378 7 VIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WS--------RTGAFSIFWVICIVAVLFVAFLVPETKGRT 77 (87)
Q Consensus 7 ~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~--------~~~~~~~~~~~~~~~~~~~~~~~pet~~~~ 77 (87)
..++|+.|...-++..++..++.+++..++..+...+.+ .+ .+...++...+.++...+. ..+|+.+..+
T Consensus 341 vl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~l~ll-~lLp~~~~~~ 419 (433)
T PF03092_consen 341 VLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLLPLPLL-FLLPPQKRIT 419 (433)
T ss_pred HHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHH-HHcCCCchhh
Confidence 568999999999999999999999999999888887766 22 2333444444454444443 4467655443
No 163
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=95.04 E-value=0.085 Score=33.93 Aligned_cols=61 Identities=10% Similarity=0.145 Sum_probs=47.8
Q ss_pred hhhcccCCcchHHHHHHH-HHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHH
Q 047378 7 VIMAEIFPINIKGSAGSL-VILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVA 67 (87)
Q Consensus 7 ~~~~E~fp~~~R~~~~~~-~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~ 67 (87)
.+..|..|.+.|+++.+. ......+++.+++.+...+.+ .+....|.+.+++.++..+...
T Consensus 330 ~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~~ 392 (396)
T TIGR00882 330 KYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLISV 392 (396)
T ss_pred HHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 456788899999887777 345678899999999999998 6777888888877777666543
No 164
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=94.84 E-value=0.25 Score=31.25 Aligned_cols=59 Identities=19% Similarity=0.196 Sum_probs=35.9
Q ss_pred cchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 047378 4 LPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMMEWSRTGAFSIFWVICIVAVL 64 (87)
Q Consensus 4 ~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 64 (87)
....+..|.+| +.|+++.++........+.+.+..... .+......+.++.........
T Consensus 320 ~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 378 (385)
T TIGR00710 320 IAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVSL-IHGNTAWPMSLSCLVLAVVSV 378 (385)
T ss_pred HHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHHh-ccccChHHHHHHHHHHHHHHH
Confidence 34566778887 579999999888887766666666553 333333444444444444433
No 165
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=94.80 E-value=0.16 Score=32.71 Aligned_cols=54 Identities=9% Similarity=0.073 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhcccC
Q 047378 20 SAGSLVILLHNCGNWIVTCTFHFMMEWSRTGAFSIFWVICIVAVLFVAFLVPET 73 (87)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~pet 73 (87)
...|..+....++..+++.+...+.+.+++..|++.+.+.++..++.+...||.
T Consensus 133 ~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 186 (396)
T TIGR00882 133 FEYGKARMFGCVGWALCASIAGILFSIDPQIVFWLGSGFALILMLLLMFAKPKA 186 (396)
T ss_pred cccchhhhhcccHHHHHHHHHhhhhccCchHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 355667777778888888887776667788888888777777766655544543
No 166
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=94.77 E-value=0.058 Score=33.41 Aligned_cols=52 Identities=13% Similarity=0.119 Sum_probs=36.9
Q ss_pred hcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 047378 9 MAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMMEWSRTGAFSIFWVICIV 61 (87)
Q Consensus 9 ~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 61 (87)
..+.||. .|+++.|+.-....+.+.+-..++..+...+....+.+.+....+
T Consensus 121 ~~~NFP~-~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~fll~la~~~~~ 172 (250)
T PF06813_consen 121 CVRNFPR-SRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSFLLFLAVLPAV 172 (250)
T ss_pred HHHhCcc-ccCceehhhhHHHHhHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 3478884 799999999999999999988888777764333334444443333
No 167
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=94.76 E-value=0.021 Score=37.91 Aligned_cols=62 Identities=23% Similarity=0.173 Sum_probs=41.0
Q ss_pred chhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHh
Q 047378 5 PSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAF 68 (87)
Q Consensus 5 ~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~ 68 (87)
.+.+.+|+.| +.|++..|+....+.+++.+.+.+.. ... .++...|++.+++.+++.++..+
T Consensus 369 ~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~ 431 (476)
T PLN00028 369 TFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAF 431 (476)
T ss_pred hcccCcccCh-hhchhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHh
Confidence 4556677655 78999999987777777777776643 111 23556777777777776665433
No 168
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=94.69 E-value=0.04 Score=36.20 Aligned_cols=60 Identities=17% Similarity=0.126 Sum_probs=43.9
Q ss_pred hhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h--h-chHHHHHHHHHHHHHHHHHHh
Q 047378 8 IMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-W--S-RTGAFSIFWVICIVAVLFVAF 68 (87)
Q Consensus 8 ~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~--~-~~~~~~~~~~~~~~~~~~~~~ 68 (87)
...|..|. .++...++....+.+++.++|.+.+.+.+ . + +...|.+.++..+++.++..+
T Consensus 385 ~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~ 448 (465)
T TIGR00894 385 NSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLI 448 (465)
T ss_pred chhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeee
Confidence 34466654 89999999999999999999998887765 2 2 455677777777776665443
No 169
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=94.68 E-value=0.26 Score=33.32 Aligned_cols=73 Identities=16% Similarity=0.073 Sum_probs=52.3
Q ss_pred ccchhhhcccCCcchH--HHHHHHHHHHHHHHHHHHHHHHHHHHH-h--hchHHHHHHHHHHHHHHHHHHhhcccCCC
Q 047378 3 GLPSVIMAEIFPINIK--GSAGSLVILLHNCGNWIVTCTFHFMME-W--SRTGAFSIFWVICIVAVLFVAFLVPETKG 75 (87)
Q Consensus 3 ~~~~~~~~E~fp~~~R--~~~~~~~~~~~~~~~~~~~~~~~~l~~-~--~~~~~~~~~~~~~~~~~~~~~~~~pet~~ 75 (87)
.+||+++++..|.+.| +.-+|+-..+..+-..+.....+.+.. . .....+.+-++..+++.++..+.+|+++.
T Consensus 399 siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~~~ 476 (477)
T TIGR01301 399 SIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRPRV 476 (477)
T ss_pred HHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 4689999999996555 667777777777777777766666444 2 24455666677777778888888898764
No 170
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=94.56 E-value=0.023 Score=37.81 Aligned_cols=65 Identities=20% Similarity=0.411 Sum_probs=53.2
Q ss_pred hhhcccCCcchHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhcc
Q 047378 7 VIMAEIFPINIKGSAGSLVILLHNC-GNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVP 71 (87)
Q Consensus 7 ~~~~E~fp~~~R~~~~~~~~~~~~~-~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~p 71 (87)
....|+-|.+.-+++.|+...++.+ ++.......+.+.+ .+|.+.|.++.+..+++.++......
T Consensus 369 l~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~~~ 435 (448)
T COG2271 369 LAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPVWN 435 (448)
T ss_pred HHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHHHh
Confidence 4578999999999999999999998 77788888888877 68888898888887777776555443
No 171
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=94.44 E-value=0.18 Score=33.45 Aligned_cols=58 Identities=19% Similarity=0.342 Sum_probs=44.7
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhccc
Q 047378 14 PINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVPE 72 (87)
Q Consensus 14 p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pe 72 (87)
|.+ |+..++....+..+++.++..+.+.+.+ .+.+..|.+.+.+..+..+...+..+|
T Consensus 119 p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~e 177 (433)
T PF03092_consen 119 PES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIVALFLLEE 177 (433)
T ss_pred Cch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHHHHHhhhh
Confidence 445 8888888888888899998888888887 667777877777777776666665665
No 172
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=94.36 E-value=0.096 Score=34.91 Aligned_cols=71 Identities=13% Similarity=0.166 Sum_probs=50.9
Q ss_pred chhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh-chHHHHHHHHHHHHHHHHHHhhcccCCCC
Q 047378 5 PSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WS-RTGAFSIFWVICIVAVLFVAFLVPETKGR 76 (87)
Q Consensus 5 ~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~-~~~~~~~~~~~~~~~~~~~~~~~pet~~~ 76 (87)
+-+|.+++.|.+.-++-.|+....++...+++|++...+.+ .+ .+..+.....+..++.+. ...+|+.+.+
T Consensus 362 SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~-L~~v~~~~~~ 434 (438)
T COG2270 362 SRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLL-LLRVKVPGRR 434 (438)
T ss_pred HHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhh-EEeecCCCCc
Confidence 34789999999999999999999999999999999999888 43 333344443444443333 3445655433
No 173
>PRK09669 putative symporter YagG; Provisional
Probab=94.23 E-value=0.4 Score=31.47 Aligned_cols=43 Identities=12% Similarity=0.126 Sum_probs=31.0
Q ss_pred ccchhhhcccCC-------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047378 3 GLPSVIMAEIFP-------INIKGSAGSLVILLHNCGNWIVTCTFHFMME 45 (87)
Q Consensus 3 ~~~~~~~~E~fp-------~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~ 45 (87)
++.+++++|..+ .+..+...|.......++..+++.+...+.+
T Consensus 338 ~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~ 387 (444)
T PRK09669 338 PLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILA 387 (444)
T ss_pred HHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888775 3334556677777788888898888887765
No 174
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=94.23 E-value=0.39 Score=30.45 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=16.8
Q ss_pred hhhcccCCcchHHHHHHHHHHHHH
Q 047378 7 VIMAEIFPINIKGSAGSLVILLHN 30 (87)
Q Consensus 7 ~~~~E~fp~~~R~~~~~~~~~~~~ 30 (87)
.+..|..| +.|+++.++......
T Consensus 310 ~~~~~~~~-~~~g~~~~~~~~~~~ 332 (377)
T PRK11102 310 AVILDEFP-HMAGTASSLAGTLRF 332 (377)
T ss_pred HHHhcccc-ccchHHHHHHHHHHH
Confidence 45677777 789999988766543
No 175
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=93.81 E-value=0.46 Score=30.72 Aligned_cols=59 Identities=17% Similarity=0.276 Sum_probs=37.5
Q ss_pred hhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhh
Q 047378 7 VIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFL 69 (87)
Q Consensus 7 ~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~ 69 (87)
.++++.+|.+.+ ++......++...++.+.+.+.+ .++...|.+.+.+++++.++.+..
T Consensus 330 ~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~~~ 389 (402)
T PRK11902 330 ALCNRSFSATQY----ALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLWLM 389 (402)
T ss_pred HhcCCCCcHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 456666675544 44444445555555667777777 777777887777777776665443
No 176
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=93.79 E-value=0.72 Score=30.69 Aligned_cols=39 Identities=13% Similarity=0.276 Sum_probs=35.8
Q ss_pred hhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047378 7 VIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME 45 (87)
Q Consensus 7 ~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~ 45 (87)
++.+|.-|.+.|++..++...+.-++..++..+...+.+
T Consensus 112 ALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~ 150 (403)
T PF03209_consen 112 ALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLD 150 (403)
T ss_pred HHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 678999999999999999999999999999999888777
No 177
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=93.24 E-value=0.57 Score=30.22 Aligned_cols=33 Identities=9% Similarity=-0.218 Sum_probs=28.1
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047378 14 PINIKGSAGSLVILLHNCGNWIVTCTFHFMMEW 46 (87)
Q Consensus 14 p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 46 (87)
+.+.|++..+.......++..+++.+...+.+.
T Consensus 338 ~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~ 370 (406)
T PRK15402 338 SDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLG 370 (406)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 348899999999999999999999888887773
No 178
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=93.17 E-value=0.2 Score=33.45 Aligned_cols=67 Identities=16% Similarity=0.104 Sum_probs=45.5
Q ss_pred hhhhcccCCcchHHHH---HHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhcccCC
Q 047378 6 SVIMAEIFPINIKGSA---GSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVPETK 74 (87)
Q Consensus 6 ~~~~~E~fp~~~R~~~---~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 74 (87)
-.+..|..+ +.+..+ +++......++..+++.+...+.+ .++...|++.+...++. .+...+.+|.+
T Consensus 142 da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~-~~~~~~~~E~~ 212 (468)
T TIGR00788 142 DSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQ-LFVSNLSKERR 212 (468)
T ss_pred HHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHH-HHHHHhccccc
Confidence 356778887 554443 334444445788888888888887 57888888888877776 44445578864
No 179
>PRK10133 L-fucose transporter; Provisional
Probab=93.10 E-value=1.3 Score=29.37 Aligned_cols=39 Identities=10% Similarity=-0.002 Sum_probs=29.2
Q ss_pred chhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047378 5 PSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFM 43 (87)
Q Consensus 5 ~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l 43 (87)
...++.|..|.+.|.+.+++......++..+++.+...+
T Consensus 138 ~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l 176 (438)
T PRK10133 138 ANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSL 176 (438)
T ss_pred HHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888787788888888888888888775543
No 180
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=92.96 E-value=0.29 Score=33.89 Aligned_cols=60 Identities=18% Similarity=0.362 Sum_probs=47.0
Q ss_pred hhhcccCCcchHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHH
Q 047378 7 VIMAEIFPINIKGSAGSLVILLH-NCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFV 66 (87)
Q Consensus 7 ~~~~E~fp~~~R~~~~~~~~~~~-~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~ 66 (87)
+|++-.-|++.|++++++..... .++-..+.++.+.+.. .+....|..+++.+++..++.
T Consensus 482 sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~ 543 (618)
T KOG3762|consen 482 SYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALF 543 (618)
T ss_pred HHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999998775 5666677777777666 677777888877777766653
No 181
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=92.68 E-value=0.95 Score=30.82 Aligned_cols=42 Identities=12% Similarity=0.135 Sum_probs=32.2
Q ss_pred CccchhhhcccCCcchHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 047378 2 AGLPSVIMAEIFPINIKGSAGSLVILLH-NCGNWIVTCTFHFM 43 (87)
Q Consensus 2 ~~~~~~~~~E~fp~~~R~~~~~~~~~~~-~~~~~~~~~~~~~l 43 (87)
.|+..+.++++.|.|.|++.+|...... .+++.++..+....
T Consensus 395 sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~ 437 (493)
T PRK15462 395 DPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQT 437 (493)
T ss_pred ChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5888899999999999999999986543 46666665555443
No 182
>PRK10091 MFS transport protein AraJ; Provisional
Probab=92.66 E-value=1.2 Score=28.54 Aligned_cols=59 Identities=12% Similarity=-0.009 Sum_probs=37.6
Q ss_pred hhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhchHHHHHHHHHHHHHHHHHHh
Q 047378 8 IMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME--WSRTGAFSIFWVICIVAVLFVAF 68 (87)
Q Consensus 8 ~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~ 68 (87)
...+..|.+.++.+ .......+++.++|.+...+.+ .++...+.+.+............
T Consensus 314 ~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (382)
T PRK10091 314 LLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLL 374 (382)
T ss_pred HHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHHH
Confidence 34455565555544 3455678999999999999888 34556666665555554444433
No 183
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=92.61 E-value=1.3 Score=30.04 Aligned_cols=69 Identities=16% Similarity=0.162 Sum_probs=48.4
Q ss_pred hhhcccCCcchH--------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH--hh-------chHH
Q 047378 7 VIMAEIFPINIK--------------------------GSAGSLVILLHNCGNWIVTCTFHFMME--WS-------RTGA 51 (87)
Q Consensus 7 ~~~~E~fp~~~R--------------------------~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~-------~~~~ 51 (87)
++.+|+-+.+.+ ++..+.....+.+++.+.-.+...+.. .. .+..
T Consensus 149 a~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~ 228 (477)
T PF11700_consen 149 AYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVA 228 (477)
T ss_pred HHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHH
Confidence 567777777777 888888888888888877776555433 22 2455
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCC
Q 047378 52 FSIFWVICIVAVLFVAFLVPETKG 75 (87)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~pet~~ 75 (87)
+.+.+++.++..+-..+.+||.++
T Consensus 229 ~~~~a~ww~vfsiP~~~~~~~~~~ 252 (477)
T PF11700_consen 229 FLIVALWWLVFSIPLFLWLPDRPG 252 (477)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCC
Confidence 666777777666666677787754
No 184
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=92.53 E-value=0.61 Score=30.05 Aligned_cols=62 Identities=13% Similarity=0.084 Sum_probs=45.9
Q ss_pred chhhhcccCCcc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHH
Q 047378 5 PSVIMAEIFPIN---IKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFV 66 (87)
Q Consensus 5 ~~~~~~E~fp~~---~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~ 66 (87)
...+.+|.|+.+ .|.++..+.+.+.++++.++....+++.+ .++...|.+-++..+++.+..
T Consensus 54 i~~~~~dq~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f 119 (372)
T PF00854_consen 54 ISPFGADQYDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVF 119 (372)
T ss_dssp HHHHHHHCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccchhhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHH
Confidence 345677888776 57778888899999999999999999888 667667766666666555543
No 185
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=92.40 E-value=0.085 Score=35.75 Aligned_cols=63 Identities=16% Similarity=0.209 Sum_probs=46.4
Q ss_pred ccchhhhcccCCcch--HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHH
Q 047378 3 GLPSVIMAEIFPINI--KGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLF 65 (87)
Q Consensus 3 ~~~~~~~~E~fp~~~--R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~ 65 (87)
|..-.+.+|+||.+. |+.+.++.+...++++.+.|.+.+++.+ .+++..|-.-+.-...+.+.
T Consensus 136 ~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~ 201 (498)
T COG3104 136 PNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVI 201 (498)
T ss_pred ccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHH
Confidence 445577889998754 8889999999999999999999999998 55555555444444443333
No 186
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=92.08 E-value=0.99 Score=30.45 Aligned_cols=69 Identities=16% Similarity=0.209 Sum_probs=47.2
Q ss_pred ccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------hhchHHHHHHHHHHHHHHHHHHhhcc
Q 047378 3 GLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-----------WSRTGAFSIFWVICIVAVLFVAFLVP 71 (87)
Q Consensus 3 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~p 71 (87)
|....++.+..|.+.++.++|+......+++.++..+...... ....+.|...++..++..+..+...|
T Consensus 398 ~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~~~~ 477 (489)
T PRK10207 398 ALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMALMVP 477 (489)
T ss_pred HHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677888999999999999998888888888777654321 12345566666666666665544333
No 187
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=91.93 E-value=0.24 Score=30.80 Aligned_cols=35 Identities=20% Similarity=0.252 Sum_probs=30.4
Q ss_pred ccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHH
Q 047378 3 GLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVT 37 (87)
Q Consensus 3 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~ 37 (87)
+....+..|..|.+.|++..|+......+++.++|
T Consensus 318 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 318 PILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 34567889999999999999999999999888876
No 188
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=91.83 E-value=1.1 Score=30.38 Aligned_cols=54 Identities=20% Similarity=0.378 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-hchHHHHHHHHHHHHHHHHHHhhc
Q 047378 17 IKGSAGSLVILLHNCGNWIVTCTFHFMME-W-SRTGAFSIFWVICIVAVLFVAFLV 70 (87)
Q Consensus 17 ~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~-~~~~~~~~~~~~~~~~~~~~~~~~ 70 (87)
.-+...|+....+.+++++.|..+....+ . .....|+.+....+++....|.+.
T Consensus 399 ~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~y 454 (462)
T PRK15034 399 ETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVY 454 (462)
T ss_pred HHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567777788888888899988887776 3 345567777777777777766543
No 189
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=91.41 E-value=1.2 Score=28.65 Aligned_cols=46 Identities=2% Similarity=0.040 Sum_probs=24.5
Q ss_pred hhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHH
Q 047378 7 VIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIF 55 (87)
Q Consensus 7 ~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~ 55 (87)
....++.|.+.|+ |...........+++.+.+.+.+ .+......+.
T Consensus 313 ~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~~~ 359 (392)
T PRK10473 313 AMSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAVLGISAWNMLI 359 (392)
T ss_pred HHHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHH
Confidence 3445566765554 44444455666666766666665 4433333333
No 190
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=91.20 E-value=3.4 Score=28.03 Aligned_cols=65 Identities=11% Similarity=0.005 Sum_probs=38.1
Q ss_pred hhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhcccC
Q 047378 7 VIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVPET 73 (87)
Q Consensus 7 ~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet 73 (87)
++-.|..|+..|.+-+-.. ..-.++..+...+.-.... .+|++ +++.....+..+....+.+||+
T Consensus 188 ~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~-~l~~~~~pl~~~a~f~~w~~ES 253 (528)
T KOG0253|consen 188 AIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRY-LLFTSSTPLMFAARFLVWVYES 253 (528)
T ss_pred HHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHHhHHHHHHHHHhhcccC
Confidence 6678999999998877665 3333444444444443344 44444 4444444444444555668997
No 191
>PRK11043 putative transporter; Provisional
Probab=90.41 E-value=1.3 Score=28.56 Aligned_cols=38 Identities=16% Similarity=0.178 Sum_probs=29.9
Q ss_pred hhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047378 7 VIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME 45 (87)
Q Consensus 7 ~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~ 45 (87)
....|..| +.|+++.|+....+..++..++...+.+.+
T Consensus 319 ~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~ 356 (401)
T PRK11043 319 AQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALIS 356 (401)
T ss_pred HHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 34556666 579999999998888888888888877765
No 192
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=90.29 E-value=2.1 Score=29.13 Aligned_cols=67 Identities=22% Similarity=0.322 Sum_probs=46.2
Q ss_pred hhhcccCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-------hchHHHHHHHHHHHHHHHHHHhhcccC
Q 047378 7 VIMAEIFP-INIKGSAGSLVILLHNCGNWIVTCTFHFMME-W-------SRTGAFSIFWVICIVAVLFVAFLVPET 73 (87)
Q Consensus 7 ~~~~E~fp-~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~-------~~~~~~~~~~~~~~~~~~~~~~~~pet 73 (87)
++.+|+-+ .+.|.+..+.-.....+++.+..++.+.+.+ . ++.....+++++..+..+++++...|.
T Consensus 135 al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER 210 (467)
T COG2211 135 ALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKER 210 (467)
T ss_pred hcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34455543 4569999999998889999999998887766 2 233445566666666666776666553
No 193
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=90.26 E-value=2 Score=27.86 Aligned_cols=59 Identities=8% Similarity=0.056 Sum_probs=40.2
Q ss_pred hhhcccCCcch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 047378 7 VIMAEIFPINI-KGSAGSLVILLHNCGNWIVTCTFHFMMEWSRTGAFSIFWVICIVAVLF 65 (87)
Q Consensus 7 ~~~~E~fp~~~-R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 65 (87)
....|.-|.+. |+++.++......++..++..+...+...+....+.+.....++++.+
T Consensus 316 ~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (393)
T PRK11195 316 ALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLVKLGVPVVAVIVGFGLLVALAM 375 (393)
T ss_pred HHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 45567766665 799999999888888888888887665566555555544444444443
No 194
>PRK09848 glucuronide transporter; Provisional
Probab=90.25 E-value=2.3 Score=27.98 Aligned_cols=41 Identities=22% Similarity=0.270 Sum_probs=29.9
Q ss_pred chhhhcccCCc-------chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047378 5 PSVIMAEIFPI-------NIKGSAGSLVILLHNCGNWIVTCTFHFMME 45 (87)
Q Consensus 5 ~~~~~~E~fp~-------~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~ 45 (87)
.+++.+|.-|. +.++...|+......++..+++.+...+.+
T Consensus 340 ~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~ 387 (448)
T PRK09848 340 MWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILG 387 (448)
T ss_pred HHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666654 356888888888888999988888777654
No 195
>PRK10429 melibiose:sodium symporter; Provisional
Probab=89.91 E-value=4.1 Score=27.18 Aligned_cols=67 Identities=6% Similarity=-0.025 Sum_probs=39.8
Q ss_pred hhhcccC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-------hchHHHHHHHHHHHHHHHHHHhhcccC
Q 047378 7 VIMAEIF-PINIKGSAGSLVILLHNCGNWIVTCTFHFMME-W-------SRTGAFSIFWVICIVAVLFVAFLVPET 73 (87)
Q Consensus 7 ~~~~E~f-p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~-------~~~~~~~~~~~~~~~~~~~~~~~~pet 73 (87)
++.+|+- ..+.|.+..+.-+....+++.+++.+...+.. . ++.....+++++.++..+..++..+|.
T Consensus 129 al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~ 204 (473)
T PRK10429 129 SLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEV 204 (473)
T ss_pred hhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCceec
Confidence 6678988 58899999988776666666666554433322 1 122334455555555555555545664
No 196
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=89.61 E-value=2.4 Score=29.00 Aligned_cols=67 Identities=10% Similarity=0.031 Sum_probs=47.9
Q ss_pred hhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------hchHHHHHHHHHHHHHHHHHHhhccc
Q 047378 7 VIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMMEW--------------SRTGAFSIFWVICIVAVLFVAFLVPE 72 (87)
Q Consensus 7 ~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~pe 72 (87)
.|++...-.+.|.++++.......++..++|.+.+.+... ....+-|+.+.++++..++..+++.|
T Consensus 152 ~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E 231 (488)
T KOG2325|consen 152 AYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKE 231 (488)
T ss_pred HHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheee
Confidence 6778888888899999888876666666666665544321 12244678888888888888887777
Q ss_pred C
Q 047378 73 T 73 (87)
Q Consensus 73 t 73 (87)
.
T Consensus 232 ~ 232 (488)
T KOG2325|consen 232 V 232 (488)
T ss_pred c
Confidence 4
No 197
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=88.75 E-value=1.6 Score=27.57 Aligned_cols=49 Identities=12% Similarity=0.043 Sum_probs=33.9
Q ss_pred ccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHH
Q 047378 3 GLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFS 53 (87)
Q Consensus 3 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~ 53 (87)
|..++...+.+|.+ .+++.++. .++.+++.+.|.+.+.+.+ .+....|+
T Consensus 249 P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~ 298 (310)
T TIGR01272 249 PTIFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFA 298 (310)
T ss_pred HHHHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHH
Confidence 34455666777764 34556664 5677889999999999888 56666665
No 198
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=88.71 E-value=4.7 Score=26.20 Aligned_cols=57 Identities=11% Similarity=0.144 Sum_probs=38.2
Q ss_pred hhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHH
Q 047378 8 IMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLF 65 (87)
Q Consensus 8 ~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~ 65 (87)
++.+..| +.+++..+.......++..+++.+...+.+ .+....+...+.+..+..+.
T Consensus 329 ~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~ 386 (394)
T PRK10213 329 WITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLTALL 386 (394)
T ss_pred HHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHH
Confidence 4566666 445566677777778899999999999988 55555555554444444333
No 199
>PTZ00207 hypothetical protein; Provisional
Probab=86.25 E-value=3.7 Score=28.76 Aligned_cols=70 Identities=6% Similarity=0.047 Sum_probs=52.6
Q ss_pred cchhhhcccCCcchHHHHHHHHHHHHHHHHHHH-HHHHHHHHH-hh-------------chHHHHHHHHHHHHHHHHHHh
Q 047378 4 LPSVIMAEIFPINIKGSAGSLVILLHNCGNWIV-TCTFHFMME-WS-------------RTGAFSIFWVICIVAVLFVAF 68 (87)
Q Consensus 4 ~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~-~~~~~~l~~-~~-------------~~~~~~~~~~~~~~~~~~~~~ 68 (87)
+....++|+|- |.-++-..+....+-++..+. .++++.+++ .. ...+|++++++++.+.+....
T Consensus 472 ~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~ 550 (591)
T PTZ00207 472 TIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTY 550 (591)
T ss_pred HHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhh
Confidence 44578999999 888888888888887777766 557777775 11 345699999999999988665
Q ss_pred hcccCC
Q 047378 69 LVPETK 74 (87)
Q Consensus 69 ~~pet~ 74 (87)
..-+||
T Consensus 551 l~~R~r 556 (591)
T PTZ00207 551 VHLQYR 556 (591)
T ss_pred eeeehH
Confidence 555554
No 200
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=86.01 E-value=7 Score=25.11 Aligned_cols=57 Identities=18% Similarity=0.138 Sum_probs=36.3
Q ss_pred hhhcccCCcchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 047378 7 VIMAEIFPINIKGSAGSLVILL-HNCGNWIVTCTFHFMMEWSRTGAFSIFWVICIVAVL 64 (87)
Q Consensus 7 ~~~~E~fp~~~R~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 64 (87)
.+..+. +.+.+++.++..... ...+..+++.+.+.+.+......++..+++.+.+.+
T Consensus 316 ~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~~~~~~~~~~~~~~~~ 373 (382)
T PRK11128 316 RYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGAGVFWVMALVALPALF 373 (382)
T ss_pred HHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 455666 445567888877644 345668889999999884334566666655554433
No 201
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=85.48 E-value=8.7 Score=25.69 Aligned_cols=59 Identities=15% Similarity=0.141 Sum_probs=47.7
Q ss_pred hcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHh
Q 047378 9 MAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAF 68 (87)
Q Consensus 9 ~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~ 68 (87)
.++ .-++.++.+.|+.....+++...+..+-..+.+ .+.....++-+...+.+.++...
T Consensus 325 ~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~ 384 (394)
T COG2814 325 LAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALL 384 (394)
T ss_pred hcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Confidence 444 446889999999999999999999999999998 67777777777777777766544
No 202
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=85.43 E-value=6.7 Score=25.19 Aligned_cols=41 Identities=27% Similarity=0.349 Sum_probs=31.0
Q ss_pred cchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047378 4 LPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME 45 (87)
Q Consensus 4 ~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~ 45 (87)
....+..|.+| +.++++.++......++..+++.+...+..
T Consensus 319 ~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~ 359 (394)
T PRK11652 319 LATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQ 359 (394)
T ss_pred HHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 34456678887 578999888888888888888887766554
No 203
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=84.99 E-value=8.6 Score=25.20 Aligned_cols=46 Identities=11% Similarity=-0.022 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 047378 17 IKGSAGSLVILLHNCGNWIVTCTFHFMMEWSRTGAFSIFWVICIVA 62 (87)
Q Consensus 17 ~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 62 (87)
.++++.++..........+++....++...+....+...+.+..+.
T Consensus 344 ~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 389 (413)
T PRK15403 344 PKGTVSASLNMVILMVMAVSVEIGRWLWFNGGRLPFHLLAVVAGVI 389 (413)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 3788888888888888888888888776666566665555444443
No 204
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=84.70 E-value=3.2 Score=27.25 Aligned_cols=41 Identities=17% Similarity=0.205 Sum_probs=36.8
Q ss_pred chhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047378 5 PSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME 45 (87)
Q Consensus 5 ~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~ 45 (87)
-|-.++-+.|.+.-+++.|+..+.++++-.+.+.+...+.+
T Consensus 373 lWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d 413 (459)
T KOG4686|consen 373 LWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIAD 413 (459)
T ss_pred HhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeec
Confidence 35667778899999999999999999999999999999887
No 205
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=83.71 E-value=2.9 Score=27.47 Aligned_cols=39 Identities=18% Similarity=0.136 Sum_probs=33.7
Q ss_pred hhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047378 7 VIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME 45 (87)
Q Consensus 7 ~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~ 45 (87)
....|..|.+.|+++.|+......+++.+++.+...+.+
T Consensus 371 ~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~ 409 (485)
T TIGR00711 371 TIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILT 409 (485)
T ss_pred HHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677899999999999999999999999988887776
No 206
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=82.83 E-value=9.8 Score=27.06 Aligned_cols=55 Identities=24% Similarity=0.263 Sum_probs=39.2
Q ss_pred ccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 047378 11 EIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMMEWSRTGAFSIFWVICIVAVLF 65 (87)
Q Consensus 11 E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 65 (87)
.-.|.+.|+.+.++......+++.++..+...-.....+.-|..++.+.++..++
T Consensus 592 ~~~p~~mks~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 646 (654)
T TIGR00926 592 SQAPPNMKSVLQALWLLTVAIGNLIVVVIAEFENFSVQAAEFFLFASLMLVVMAI 646 (654)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHH
Confidence 4568999999999999999999999888877644334444565555555554443
No 207
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=82.79 E-value=3 Score=28.44 Aligned_cols=38 Identities=18% Similarity=0.113 Sum_probs=31.5
Q ss_pred hhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047378 8 IMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME 45 (87)
Q Consensus 8 ~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~ 45 (87)
+.+-.||.+.|+.+..++...+-++..++..+-|.+..
T Consensus 164 iA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~ 201 (480)
T KOG2563|consen 164 IAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVP 201 (480)
T ss_pred HHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecC
Confidence 45567999999999999999988888888777776654
No 208
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=82.58 E-value=0.22 Score=33.88 Aligned_cols=62 Identities=13% Similarity=0.236 Sum_probs=50.7
Q ss_pred chhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh-chHHHHHHHHHHHHHHHHH
Q 047378 5 PSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WS-RTGAFSIFWVICIVAVLFV 66 (87)
Q Consensus 5 ~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~-~~~~~~~~~~~~~~~~~~~ 66 (87)
...++.|+.+.+.-+.+.|+...+..++..++|.+...+.+ .+ +...|...+...+++....
T Consensus 409 ~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~ 472 (509)
T KOG2504|consen 409 TPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLL 472 (509)
T ss_pred HHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHH
Confidence 34578899999999999999999999999999999998888 44 6666777777777766553
No 209
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=82.03 E-value=16 Score=26.06 Aligned_cols=61 Identities=18% Similarity=0.184 Sum_probs=43.1
Q ss_pred hhhhcccCCcc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-------hchHHHHHHHHHHHHHHHHH
Q 047378 6 SVIMAEIFPIN---IKGSAGSLVILLHNCGNWIVTCTFHFMME-W-------SRTGAFSIFWVICIVAVLFV 66 (87)
Q Consensus 6 ~~~~~E~fp~~---~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~-------~~~~~~~~~~~~~~~~~~~~ 66 (87)
-+...|.|+.+ .|.....+.+...++++.+++.+.+++.+ . +++..|.+.++..+++.+..
T Consensus 107 saf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf 178 (654)
T TIGR00926 107 SAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVF 178 (654)
T ss_pred hhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHH
Confidence 35566777643 47888999999999999999999998874 2 25556666655555555543
No 210
>PRK10429 melibiose:sodium symporter; Provisional
Probab=81.45 E-value=10 Score=25.31 Aligned_cols=42 Identities=12% Similarity=0.263 Sum_probs=28.3
Q ss_pred cchhhhccc-----CCcchHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q 047378 4 LPSVIMAEI-----FPINIKGSAG--SLVILLHNCGNWIVTCTFHFMME 45 (87)
Q Consensus 4 ~~~~~~~E~-----fp~~~R~~~~--~~~~~~~~~~~~~~~~~~~~l~~ 45 (87)
..+++++|. +++..|..|. |.......++..+++.+.+.+.+
T Consensus 344 ~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~ 392 (473)
T PRK10429 344 LQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLG 392 (473)
T ss_pred HHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356678888 4455555554 55555667888888888877665
No 211
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=81.16 E-value=12 Score=25.10 Aligned_cols=56 Identities=9% Similarity=0.061 Sum_probs=40.6
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-hchHHHHHHHHHHHHHHHHHHhh
Q 047378 14 PINIKGSAGSLVILLHNCGNWIVTCTFHFMME-W-SRTGAFSIFWVICIVAVLFVAFL 69 (87)
Q Consensus 14 p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~-~~~~~~~~~~~~~~~~~~~~~~~ 69 (87)
.++.-++-.+++..++++.+..+|.+++++-| . ++......++...+...+..+..
T Consensus 327 ~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~Gl~a 384 (395)
T COG2807 327 DAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLIFGLRA 384 (395)
T ss_pred ChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHHHHhhc
Confidence 34455667778888889999999999999999 4 44455666666666666665543
No 212
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=80.36 E-value=2.1 Score=28.67 Aligned_cols=58 Identities=16% Similarity=0.167 Sum_probs=34.9
Q ss_pred cchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHH
Q 047378 4 LPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAV 63 (87)
Q Consensus 4 ~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~ 63 (87)
.-++...+..|.+ ....|....+...++.+.|.+.+.+.+ .+....+......|.+..
T Consensus 344 TIfslal~~l~~~--ts~~s~~l~maivGGAiiP~l~G~i~d~~g~~~~~~~~pllc~lyV 402 (422)
T COG0738 344 TIFSLALKNLGEH--TSVGSGLLVMAIVGGAIIPPLQGVIADMFGIQLTFLIVPLLCYLYV 402 (422)
T ss_pred HHHHHHHhccCcc--ccccceeeeeheecchHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 3344555555622 333444445677889999999999998 555555554444444433
No 213
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.27 E-value=8.3 Score=21.11 Aligned_cols=52 Identities=13% Similarity=0.192 Sum_probs=36.4
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhchHHHHHHHHHHHHHHHH
Q 047378 14 PINIKGSAGSLVILLHNCGNWIVTCTFHFMME---WSRTGAFSIFWVICIVAVLF 65 (87)
Q Consensus 14 p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~ 65 (87)
..+.++.+.++-.+.--+.+.++....+++.+ ...+|-++++..+++...++
T Consensus 36 a~s~k~~~~a~klssefIsGilVGa~iG~llD~~agTsPwglIv~lllGf~AG~l 90 (116)
T COG5336 36 AESIKGYAQAFKLSSEFISGILVGAGIGWLLDKFAGTSPWGLIVFLLLGFGAGVL 90 (116)
T ss_pred chhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 34567788888877778888899999999988 23555555555555555544
No 214
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=78.88 E-value=4.3 Score=27.29 Aligned_cols=64 Identities=22% Similarity=0.368 Sum_probs=48.5
Q ss_pred chhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh-chHHHHHHHHHHHHHHHHHHhh
Q 047378 5 PSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WS-RTGAFSIFWVICIVAVLFVAFL 69 (87)
Q Consensus 5 ~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~-~~~~~~~~~~~~~~~~~~~~~~ 69 (87)
+|-+++.+||. .-+...|+..+++.++++..|..+....+ .+ ....|+++..+.+++.++.+..
T Consensus 335 vfk~Ip~if~~-~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~ 400 (417)
T COG2223 335 VFKMIPVIFPK-ETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWAL 400 (417)
T ss_pred heeechHHHHh-hhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666 44668889999999999999999998888 44 6667888888888888765543
No 215
>PF04281 Tom22: Mitochondrial import receptor subunit Tom22 ; InterPro: IPR005683 The mitochondrial protein translocase family, which is responsible for movement of nuclear encoded pre-proteins into mitochondria, is very complex with at least 19 components. These proteins include several chaperone proteins, four proteins of the outer membrane translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family represents the Tom22 proteins []. The N-terminal region of Tom22 has been shown to have chaperone-like activity, and the C-terminal region faces the intermembrane face []. ; GO: 0006886 intracellular protein transport, 0005741 mitochondrial outer membrane
Probab=78.63 E-value=9.9 Score=21.62 Aligned_cols=22 Identities=23% Similarity=0.381 Sum_probs=17.3
Q ss_pred hcccCCcchHHHHHHHHHHHHH
Q 047378 9 MAEIFPINIKGSAGSLVILLHN 30 (87)
Q Consensus 9 ~~E~fp~~~R~~~~~~~~~~~~ 30 (87)
..|++|.+.|....+......+
T Consensus 60 Lkdi~P~~~R~~i~~~~~~~~~ 81 (137)
T PF04281_consen 60 LKDIFPPSVRNWISSTVSTTSS 81 (137)
T ss_pred HhccCCHHHHHHHHHHHHHHHH
Confidence 5799999999988877764443
No 216
>TIGR00901 2A0125 AmpG-related permease.
Probab=77.31 E-value=1.4 Score=27.78 Aligned_cols=26 Identities=8% Similarity=0.034 Sum_probs=21.7
Q ss_pred cchhhhcccCCcchHHHHHHHHHHHH
Q 047378 4 LPSVIMAEIFPINIKGSAGSLVILLH 29 (87)
Q Consensus 4 ~~~~~~~E~fp~~~R~~~~~~~~~~~ 29 (87)
....+.+|.+|++.|++.+|+.....
T Consensus 329 ~~~~~~~~~~p~~~~g~~~g~~~~~~ 354 (356)
T TIGR00901 329 AFVAFLSKLSNPKFGATQMALLSSLS 354 (356)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHH
Confidence 34578999999999999999887654
No 217
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=76.86 E-value=19 Score=23.85 Aligned_cols=64 Identities=17% Similarity=0.182 Sum_probs=38.1
Q ss_pred CCcchHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-h--hchHHHHHHHHHHHHHHHHHHhhcccCCCC
Q 047378 13 FPINIKGSAGSLVI-LLHNCGNWIVTCTFHFMME-W--SRTGAFSIFWVICIVAVLFVAFLVPETKGR 76 (87)
Q Consensus 13 fp~~~R~~~~~~~~-~~~~~~~~~~~~~~~~l~~-~--~~~~~~~~~~~~~~~~~~~~~~~~pet~~~ 76 (87)
||.+..+...+... ..+.+.++....+...+.+ . +...+|..-..+.+++.++....-+|..|.
T Consensus 155 ~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~ 222 (354)
T PF05631_consen 155 FPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPENYGD 222 (354)
T ss_pred CChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhcccccCCC
Confidence 45555555555444 2344555555666666555 3 346677777777777777766666776554
No 218
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=76.55 E-value=21 Score=24.23 Aligned_cols=71 Identities=7% Similarity=-0.033 Sum_probs=48.3
Q ss_pred chhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------hhchHHHHHHHHHHHHHHH
Q 047378 5 PSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME--------------------WSRTGAFSIFWVICIVAVL 64 (87)
Q Consensus 5 ~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~--------------------~~~~~~~~~~~~~~~~~~~ 64 (87)
...|++.+.|.+..+.-+++....+.+++.++|.+...+.. .....+|...+....+..+
T Consensus 125 aNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v 204 (422)
T COG0738 125 ANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAV 204 (422)
T ss_pred cchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 34677888888888888999999999999999887765443 1144556666666665555
Q ss_pred HH-HhhcccCCC
Q 047378 65 FV-AFLVPETKG 75 (87)
Q Consensus 65 ~~-~~~~pet~~ 75 (87)
.. ....||.+.
T Consensus 205 ~~~~~k~p~~~~ 216 (422)
T COG0738 205 LILLSKLPDLQV 216 (422)
T ss_pred HHHhccCCcCCc
Confidence 43 334466543
No 219
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=74.32 E-value=7.1 Score=26.94 Aligned_cols=71 Identities=14% Similarity=0.193 Sum_probs=51.6
Q ss_pred CccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHH------HHH-hhchHHHHHHHHHHHHHHHHHHhhccc
Q 047378 2 AGLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHF------MME-WSRTGAFSIFWVICIVAVLFVAFLVPE 72 (87)
Q Consensus 2 ~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~------l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pe 72 (87)
.|+.-.+++-+-|++..+..++.....+..++.+...+.+. ..+ ......|+.++...++..+......|+
T Consensus 412 SpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~~~~~~~~~~~~ 489 (498)
T COG3104 412 SPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFGTIGVVAIVIGILLLLLSPK 489 (498)
T ss_pred CHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHH
Confidence 46677888889999999999999988888888777777662 222 455566777777777777765554443
No 220
>PRK11462 putative transporter; Provisional
Probab=73.88 E-value=23 Score=23.72 Aligned_cols=41 Identities=12% Similarity=0.124 Sum_probs=25.9
Q ss_pred chhhhcccCC-----cchHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Q 047378 5 PSVIMAEIFP-----INIKGSAGSLV--ILLHNCGNWIVTCTFHFMME 45 (87)
Q Consensus 5 ~~~~~~E~fp-----~~~R~~~~~~~--~~~~~~~~~~~~~~~~~l~~ 45 (87)
.+.+++|.-. +..|..|..++ .....++..+++.+.+.+.+
T Consensus 339 ~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~ 386 (460)
T PRK11462 339 QWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLA 386 (460)
T ss_pred HHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555544 44666666444 46677888888887776654
No 221
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=73.68 E-value=25 Score=23.74 Aligned_cols=51 Identities=14% Similarity=0.093 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHh
Q 047378 18 KGSAGSLVILLHNCGNWIVTCTFHFMMEWSRTGAFSIFWVICIVAVLFVAF 68 (87)
Q Consensus 18 R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (87)
.+.-.|=.+..+.++-.++..+.+.+.+......|++.....++..++..+
T Consensus 136 ~~feYG~~R~wGSig~ai~s~~~G~L~~i~p~~~fwi~s~~~~il~lll~~ 186 (412)
T PF01306_consen 136 NGFEYGRARMWGSIGFAIASLLAGILFNINPNIIFWIASAAAIILLLLLLL 186 (412)
T ss_dssp HSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hcCCcchHHHHhhHHHHHHHHHhheeeeeCccHHHHHHHHHHHHHHHHHHH
Confidence 344566677888888888999999888866666777655544444444444
No 222
>PRK03612 spermidine synthase; Provisional
Probab=71.24 E-value=31 Score=23.91 Aligned_cols=47 Identities=15% Similarity=0.187 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--hhchHHHHHHHHHHHHHHHH
Q 047378 19 GSAGSLVILLHNCGNWIVTCTFHFMME--WSRTGAFSIFWVICIVAVLF 65 (87)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~ 65 (87)
+...|-.+..+.+++++++.+.+.+.- .+.....++.+.++++..++
T Consensus 144 g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~~ 192 (521)
T PRK03612 144 GHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAALV 192 (521)
T ss_pred hhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 355777788888999999998887654 55555666666666555543
No 223
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=69.34 E-value=19 Score=23.72 Aligned_cols=41 Identities=22% Similarity=0.151 Sum_probs=29.8
Q ss_pred ccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047378 3 GLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME 45 (87)
Q Consensus 3 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~ 45 (87)
|..+....+..+.+.+....++.... +++.+.|.+.+.+.+
T Consensus 340 p~i~sl~~~~~g~~~~~~s~~l~~~~--~Gga~~p~l~G~~~d 380 (410)
T TIGR00885 340 PTIYGIALKGLGQDTKYGAAGLVMAI--IGGGIVPPLQGFIID 380 (410)
T ss_pred HHHHHHHHhhhhhhhhhhHHHHHHHH--hccchHHHHHHHHHH
Confidence 45566777778877665555555543 889999999999888
No 224
>TIGR00986 3a0801s05tom22 mitochondrial import receptor subunit Tom22. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom22 proteins.
Probab=69.23 E-value=19 Score=20.67 Aligned_cols=22 Identities=18% Similarity=0.169 Sum_probs=17.2
Q ss_pred hcccCCcchHHHHHHHHHHHHH
Q 047378 9 MAEIFPINIKGSAGSLVILLHN 30 (87)
Q Consensus 9 ~~E~fp~~~R~~~~~~~~~~~~ 30 (87)
..|++|...|....+.......
T Consensus 58 LkDm~Pp~~R~~i~~~~s~t~s 79 (145)
T TIGR00986 58 LKDIVPPTTRGWIYHKYSTTTN 79 (145)
T ss_pred HHhhCCHHHHHHHHHHHHHHHH
Confidence 5799999999988877764443
No 225
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=68.03 E-value=39 Score=23.68 Aligned_cols=48 Identities=13% Similarity=0.236 Sum_probs=35.6
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHH
Q 047378 13 FPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVL 64 (87)
Q Consensus 13 fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~ 64 (87)
+|+++|+... ....++++++.+.++++.+ .++..+|-.-.++.+++.+
T Consensus 81 ~ps~i~~~Vn----~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~ 129 (538)
T KOG0252|consen 81 YPSGVLALVN----AAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSA 129 (538)
T ss_pred CCchHHHHHH----HHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHH
Confidence 7888777554 4556888999999999999 7777777665556666555
No 226
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=67.95 E-value=5.5 Score=26.92 Aligned_cols=50 Identities=10% Similarity=0.062 Sum_probs=39.1
Q ss_pred hhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhchHHHHHHH
Q 047378 7 VIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME--WSRTGAFSIFW 56 (87)
Q Consensus 7 ~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~ 56 (87)
.+..-..|++.|++..|+.++.+.++-+++|...+.+.. .+.+..+...+
T Consensus 375 ~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~Ws~~~~~a~~~~~ 426 (451)
T KOG2615|consen 375 SLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSWSQGAQPAYIAWG 426 (451)
T ss_pred HHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEEecCCCceeeehH
Confidence 556778999999999999999999999999999977665 34444443333
No 227
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=67.79 E-value=20 Score=25.22 Aligned_cols=35 Identities=20% Similarity=0.278 Sum_probs=30.6
Q ss_pred ccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047378 11 EIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME 45 (87)
Q Consensus 11 E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~ 45 (87)
+-.|.+.|+.++++......+++.++..+......
T Consensus 485 ~qaP~sMkS~~~al~l~t~a~G~~lss~Lv~~v~~ 519 (571)
T KOG1237|consen 485 SQAPESMKSVATALWLLTVAVGNYLSSVLVSLVQF 519 (571)
T ss_pred hhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45799999999999999999999999998876555
No 228
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=67.64 E-value=17 Score=22.95 Aligned_cols=34 Identities=0% Similarity=-0.180 Sum_probs=23.5
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047378 12 IFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME 45 (87)
Q Consensus 12 ~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~ 45 (87)
..+++.++...++......+++.++|.+...+.+
T Consensus 314 ~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~ 347 (355)
T TIGR00896 314 SRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHD 347 (355)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566777777776777777777777777766
No 229
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=66.73 E-value=13 Score=24.94 Aligned_cols=40 Identities=13% Similarity=0.228 Sum_probs=32.5
Q ss_pred hhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047378 6 SVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME 45 (87)
Q Consensus 6 ~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~ 45 (87)
.....+..|.+.|+.+.++......+++.+++.+...+.+
T Consensus 373 ~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~ 412 (495)
T PRK14995 373 TSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLS 412 (495)
T ss_pred HHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556678899999999999988888888888877777655
No 230
>PF10183 ESSS: ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) ; InterPro: IPR019329 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry represents the ESSS subunit from mitochondrial NADH:ubiquinone oxidoreductase (complex I). It carries mitochondrial import sequences [].
Probab=64.80 E-value=20 Score=19.25 Aligned_cols=33 Identities=15% Similarity=-0.084 Sum_probs=19.0
Q ss_pred hhchHHHHHHHHHHHHHHHHHHhhcccCCCCCH
Q 047378 46 WSRTGAFSIFWVICIVAVLFVAFLVPETKGRTL 78 (87)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~ 78 (87)
.++..++++.-.++++.+.+.+.+.||++-++-
T Consensus 57 e~we~~~f~~~~~~~v~~~~~~~y~PD~~i~~W 89 (105)
T PF10183_consen 57 EGWELPFFFGFSGSLVFGGVFLAYKPDTSIQTW 89 (105)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 455556655444444545555556799876553
No 231
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=64.46 E-value=11 Score=25.73 Aligned_cols=56 Identities=14% Similarity=0.116 Sum_probs=43.8
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhchHHHHHHHHHHHHHHHHHHhh
Q 047378 14 PINIKGSAGSLVILLHNCGNWIVTCTFHFMME----WSRTGAFSIFWVICIVAVLFVAFL 69 (87)
Q Consensus 14 p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~ 69 (87)
.++.-+..+|+...+..+.+++.|.+.+.+.. ..|..+|++.+++.+++.++..++
T Consensus 387 apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f 446 (466)
T KOG2532|consen 387 APQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFF 446 (466)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence 44556778888888889999999998888773 468888999988888888765444
No 232
>PRK10133 L-fucose transporter; Provisional
Probab=62.74 E-value=39 Score=22.48 Aligned_cols=57 Identities=16% Similarity=0.026 Sum_probs=35.2
Q ss_pred ccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh-chHHHHHHHHHHHH
Q 047378 3 GLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WS-RTGAFSIFWVICIV 61 (87)
Q Consensus 3 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~-~~~~~~~~~~~~~~ 61 (87)
|..+....|.+|.+ .+++.++.. +...++.+++.+...+.+ .+ .+..|++..+..+.
T Consensus 366 P~~~s~a~~~~~~~-~~~as~l~~-~~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~ 424 (438)
T PRK10133 366 PTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAV 424 (438)
T ss_pred HHHHHHHHcccchh-hccchhHHh-HHhccchHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 44556677777654 456666665 455677888888888777 44 45556544433333
No 233
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=60.58 E-value=53 Score=22.63 Aligned_cols=41 Identities=17% Similarity=-0.015 Sum_probs=37.0
Q ss_pred cchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047378 4 LPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMM 44 (87)
Q Consensus 4 ~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~ 44 (87)
+.|.+.+|++..+.=.+-.++....+.++..+++.+..++.
T Consensus 149 lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 149 LFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999999999999999999998888776
No 234
>KOG4473 consensus Uncharacterized membrane protein [Function unknown]
Probab=60.25 E-value=39 Score=21.01 Aligned_cols=32 Identities=13% Similarity=-0.043 Sum_probs=26.2
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047378 14 PINIKGSAGSLVILLHNCGNWIVTCTFHFMME 45 (87)
Q Consensus 14 p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~ 45 (87)
|++.|++-.++........+.+.|.+...+..
T Consensus 158 p~~~~p~qaA~asa~afslGg~vPLl~~~fi~ 189 (247)
T KOG4473|consen 158 PAENRPLQAAAASALAFSLGGIVPLLPAAFVK 189 (247)
T ss_pred CCCCchHHHHHHHHHHHHhccHHhhhHHHhhh
Confidence 67788888888888888888889988776665
No 235
>COG0861 TerC Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]
Probab=57.94 E-value=45 Score=21.02 Aligned_cols=39 Identities=13% Similarity=0.104 Sum_probs=23.7
Q ss_pred hhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047378 6 SVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMM 44 (87)
Q Consensus 6 ~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~ 44 (87)
.+++..-+|.+.|.++.=+.....-+.=.+......++.
T Consensus 38 iai~~~~Lp~~qr~ral~~Gl~~A~v~R~~ll~~~s~Ll 76 (254)
T COG0861 38 IAILASKLPPKQRKKALFIGLAGALVLRIILLASISWLL 76 (254)
T ss_pred HHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466788899999988876655444444333333333443
No 236
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=57.94 E-value=56 Score=22.08 Aligned_cols=61 Identities=15% Similarity=0.223 Sum_probs=46.7
Q ss_pred hhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-hchHHHHHHHHHHHHHHHHHH
Q 047378 6 SVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-W-SRTGAFSIFWVICIVAVLFVA 67 (87)
Q Consensus 6 ~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~-~~~~~~~~~~~~~~~~~~~~~ 67 (87)
...+-|-||.|. +..+|+.+....+++.+++.+...+.+ . +|+....+++...++..+..+
T Consensus 121 PslIK~~Fpk~~-~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~Wl 183 (395)
T COG2807 121 PSLIKRDFPKRV-GLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWL 183 (395)
T ss_pred hHHHHhhcccch-hhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHh
Confidence 356677788664 667888888889999999999888887 4 577788888777777666543
No 237
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=57.48 E-value=51 Score=22.58 Aligned_cols=43 Identities=2% Similarity=0.016 Sum_probs=36.4
Q ss_pred ccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047378 3 GLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME 45 (87)
Q Consensus 3 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~ 45 (87)
|...++.+-+-..+.+++..++.+.+..+.+++++.++..+..
T Consensus 349 pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~ 391 (463)
T KOG2816|consen 349 PAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFA 391 (463)
T ss_pred HHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHH
Confidence 3344667788889999999999999999999999999887754
No 238
>PRK09848 glucuronide transporter; Provisional
Probab=56.52 E-value=55 Score=21.60 Aligned_cols=18 Identities=6% Similarity=-0.032 Sum_probs=9.5
Q ss_pred hcccC-CcchHHHHHHHHH
Q 047378 9 MAEIF-PINIKGSAGSLVI 26 (87)
Q Consensus 9 ~~E~f-p~~~R~~~~~~~~ 26 (87)
..|+- +.+.|.+..++-.
T Consensus 134 ~~~~~~~~~~r~~~~~~r~ 152 (448)
T PRK09848 134 ATAMTQQPQSRARLGAARG 152 (448)
T ss_pred hhhhcCCHHHHHHHHHHHH
Confidence 34444 3456777655443
No 239
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=54.30 E-value=34 Score=22.58 Aligned_cols=43 Identities=12% Similarity=0.000 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhcccCC
Q 047378 31 CGNWIVTCTFHFMMEWSRTGAFSIFWVICIVAVLFVAFLVPETK 74 (87)
Q Consensus 31 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 74 (87)
++..+++.+.+.+.....+.++++.++..++..++ .+.+||+.
T Consensus 141 lG~~ig~~l~g~l~~~~~~~~f~~~~~~~~~~~~~-~~~~~e~~ 183 (418)
T TIGR00889 141 IGFIAAMWAVSLLDIELSNIQLYITAGSSALLGVF-ALTLPDIP 183 (418)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHH-HhcCCCCC
Confidence 45556666665542232334566666666665554 34567763
No 240
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=54.14 E-value=16 Score=25.20 Aligned_cols=45 Identities=13% Similarity=0.005 Sum_probs=24.5
Q ss_pred hhcccCCcchHHHHHHHHH-HHHHHHHHHHHHHHHHHHH--hhchHHH
Q 047378 8 IMAEIFPINIKGSAGSLVI-LLHNCGNWIVTCTFHFMME--WSRTGAF 52 (87)
Q Consensus 8 ~~~E~fp~~~R~~~~~~~~-~~~~~~~~~~~~~~~~l~~--~~~~~~~ 52 (87)
-.++....+.|........ ......+.+++.++..... ..+...|
T Consensus 391 w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap~y~~~~~f 438 (495)
T KOG2533|consen 391 WTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFRSLDAPRYGWGAVF 438 (495)
T ss_pred hccccccchHHhHHHHhhhhcchhHHHHhhhhhcccccCcchhhhhHH
Confidence 3445555555555444443 3446667777776665444 3555556
No 241
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.32 E-value=97 Score=21.42 Aligned_cols=40 Identities=15% Similarity=0.183 Sum_probs=30.7
Q ss_pred chhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047378 5 PSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME 45 (87)
Q Consensus 5 ~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~ 45 (87)
-+.+++..+ ++.|+++.++...-....+.+..+..+....
T Consensus 374 ~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~~~l 413 (461)
T KOG3098|consen 374 RYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPYLLL 413 (461)
T ss_pred HHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 356677777 7788999999988888888887777776443
No 242
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=45.72 E-value=1.2e+02 Score=22.39 Aligned_cols=73 Identities=11% Similarity=0.026 Sum_probs=47.1
Q ss_pred ccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH----h----------------hchHHHHHHHHHHHHH
Q 047378 3 GLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME----W----------------SRTGAFSIFWVICIVA 62 (87)
Q Consensus 3 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~----~----------------~~~~~~~~~~~~~~~~ 62 (87)
|+...|+=|.-..+.-+.=.|+...+..++.+++-.+...+.. . .||.-|++.+.+.++.
T Consensus 256 tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~ 335 (735)
T KOG3626|consen 256 TLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFS 335 (735)
T ss_pred cCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHH
Confidence 4455677777777777777888887777777777766666553 1 1334466677777666
Q ss_pred HHHHHhhcccCCCC
Q 047378 63 VLFVAFLVPETKGR 76 (87)
Q Consensus 63 ~~~~~~~~pet~~~ 76 (87)
.+-.++ .|.+..+
T Consensus 336 a~p~f~-fPk~lp~ 348 (735)
T KOG3626|consen 336 AVPLFF-FPKELPK 348 (735)
T ss_pred HHHHHh-CcccCcc
Confidence 666544 5655443
No 243
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=44.43 E-value=95 Score=20.76 Aligned_cols=58 Identities=14% Similarity=0.060 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHH
Q 047378 26 ILLHNCGNWIVTCTFHFMMEWSRTGAFSIFWVICIVAVLFVAFLVPETKGRTLEEIQIS 84 (87)
Q Consensus 26 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~~~~~~~ 84 (87)
.+....+|.+-|..........++..+..+..-.+...+....-++++.| +.+++.+.
T Consensus 6 amffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~av~~~gG-~~~~l~~~ 63 (378)
T TIGR00796 6 ALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLIALALVGG-GYDSLSAR 63 (378)
T ss_pred HHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHheeeecCC-CHHHHHHH
Confidence 33444555555554443332333334444444444444444455677654 44555443
No 244
>COG3817 Predicted membrane protein [Function unknown]
Probab=43.94 E-value=71 Score=20.51 Aligned_cols=52 Identities=13% Similarity=0.133 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHH
Q 047378 33 NWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVPETKGRTLEEIQIS 84 (87)
Q Consensus 33 ~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~~~~~~~ 84 (87)
..++.++++.+.. ......+.-.++-++++.+..-....++.++..+|.++.
T Consensus 108 tlig~~lf~~~s~~~pknatl~al~i~~i~a~vla~~mt~~~p~~~~~E~~rl 160 (313)
T COG3817 108 TLIGSLLFPDLSFFDPKNATLMALGIAAIVATVLACVMTKQTPKAAVQEARRL 160 (313)
T ss_pred HHHHHHHhccccccCCcchhHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHH
Confidence 3344444444433 223455666666666766665555577776666665443
No 245
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=43.39 E-value=5.4 Score=27.40 Aligned_cols=52 Identities=6% Similarity=0.057 Sum_probs=39.9
Q ss_pred hhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHH
Q 047378 7 VIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVI 58 (87)
Q Consensus 7 ~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~ 58 (87)
++.+|+.-++..++.+++.......+..++|.+...+.. .+..+...+..+.
T Consensus 411 tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~ 463 (488)
T KOG2325|consen 411 TLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCL 463 (488)
T ss_pred HHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHH
Confidence 567899999999999999988888999999998888887 4444444433333
No 246
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=42.05 E-value=65 Score=21.39 Aligned_cols=34 Identities=12% Similarity=-0.076 Sum_probs=22.8
Q ss_pred cccCCcchHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 047378 10 AEIFPINIKGSAGSLVILLH-NCGNWIVTCTFHFM 43 (87)
Q Consensus 10 ~E~fp~~~R~~~~~~~~~~~-~~~~~~~~~~~~~l 43 (87)
.-.|...+|..|+|+..... .++..+++.+-|..
T Consensus 87 gltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~ 121 (344)
T PF06379_consen 87 GLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIF 121 (344)
T ss_pred hhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHH
Confidence 34566778999999998776 45555555554443
No 247
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=41.31 E-value=22 Score=25.16 Aligned_cols=37 Identities=14% Similarity=0.058 Sum_probs=31.8
Q ss_pred hcccCCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 047378 9 MAEIFPINIKGSAGSLVILLHNCG-NWIVTCTFHFMME 45 (87)
Q Consensus 9 ~~E~fp~~~R~~~~~~~~~~~~~~-~~~~~~~~~~l~~ 45 (87)
+=...|.+.|+.++|+.....++. .+.+|.+++.+.+
T Consensus 543 ~lR~V~~~~rs~alg~~~~~~rllg~iP~pi~fG~~iD 580 (633)
T TIGR00805 543 LLRVVNPEEKSLAIGLQWLCMRVFATIPAPILFGLLID 580 (633)
T ss_pred EeeccCcccchHHhhHHHHHHHHhcCCChhHHHhhhhh
Confidence 445789999999999999998855 5799999999987
No 248
>PF04695 Pex14_N: Peroxisomal membrane anchor protein (Pex14p) conserved region; InterPro: IPR006785 This conserved region defines a group of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes. Loss of functional Pex14p results in defects in both the PTS1 and PTS2-dependent import pathways. Deletion analysis of this conserved region implicates it in selective peroxisome degradation. In the majority of members this region is situated at the N terminus of the protein [, ].; GO: 0005777 peroxisome, 0016020 membrane; PDB: 2W85_A 2W84_A 3FF5_B.
Probab=40.09 E-value=11 Score=21.22 Aligned_cols=15 Identities=47% Similarity=0.547 Sum_probs=10.0
Q ss_pred cCCCCCHHHHHHHhh
Q 047378 72 ETKGRTLEEIQISIT 86 (87)
Q Consensus 72 et~~~~~~~~~~~~~ 86 (87)
|.||.+.+||++.++
T Consensus 31 ~sKGLt~~EI~~al~ 45 (136)
T PF04695_consen 31 ESKGLTEEEIDEALG 45 (136)
T ss_dssp HHCT--HHHHHHHHH
T ss_pred HcCCCCHHHHHHHHH
Confidence 568888888888764
No 249
>PHA03231 glycoprotein BALF4; Provisional
Probab=39.80 E-value=1.3e+02 Score=22.57 Aligned_cols=26 Identities=0% Similarity=-0.130 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047378 20 SAGSLVILLHNCGNWIVTCTFHFMME 45 (87)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~l~~ 45 (87)
.|-++...++.++++++..+.+...-
T Consensus 674 vGk~vg~vv~~v~ga~~SiVsG~~sF 699 (829)
T PHA03231 674 VGKAVGNVVSGVAGAVGSIVSGVISF 699 (829)
T ss_pred hchhhhhhhhhHHHHHHHHHHHHHHH
Confidence 34455555666666666666665443
No 250
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=39.46 E-value=79 Score=18.45 Aligned_cols=42 Identities=24% Similarity=0.252 Sum_probs=27.4
Q ss_pred ccchhhhcccCCc-chHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 047378 3 GLPSVIMAEIFPI-NIKGSAGSLVILL-HNCGNWIVTCTFHFMM 44 (87)
Q Consensus 3 ~~~~~~~~E~fp~-~~R~~~~~~~~~~-~~~~~~~~~~~~~~l~ 44 (87)
|....+.+|.+|. +.|+...+..... ...+..+++.+...+.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (338)
T COG0477 113 PVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLL 156 (338)
T ss_pred HHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788999998 6788888877763 4455555554444333
No 251
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=37.89 E-value=1.1e+02 Score=19.42 Aligned_cols=39 Identities=13% Similarity=-0.119 Sum_probs=25.3
Q ss_pred cchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047378 4 LPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHF 42 (87)
Q Consensus 4 ~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~ 42 (87)
..|+.-.-.--+-+|..|+|+....-...+.+.......
T Consensus 63 ~lW~~gN~~~vpii~~iGLglg~liW~s~n~l~Gw~~gr 101 (254)
T PF07857_consen 63 ALWATGNILVVPIIKTIGLGLGMLIWGSVNCLTGWASGR 101 (254)
T ss_pred hhhhcCceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhh
Confidence 344444444455578888888877777777777776554
No 252
>PF01350 Flavi_NS4A: Flavivirus non-structural protein NS4A; InterPro: IPR000404 Flaviviruses encode a single polyprotein. This is cleaved into three structural and seven non-structural proteins. The NS4A protein is small and poorly conserved among the Flaviviruses. NS4A contains multiple hydrophobic potential membrane spanning regions []. NS4A has only been found in cells infected by Kunjin virus [].; GO: 0016032 viral reproduction, 0016070 RNA metabolic process, 0044423 virion part
Probab=35.30 E-value=92 Score=17.98 Aligned_cols=27 Identities=22% Similarity=0.421 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHhhcccC-CCCCHHH
Q 047378 54 IFWVICIVAVLFVAFLVPET-KGRTLEE 80 (87)
Q Consensus 54 ~~~~~~~~~~~~~~~~~pet-~~~~~~~ 80 (87)
-.++..++.+++.....||. |+|+..|
T Consensus 100 ~IAg~~lv~filmvVLiPEpg~QRS~~D 127 (144)
T PF01350_consen 100 QIAGVLLVFFILMVVLIPEPGKQRSQQD 127 (144)
T ss_pred HhHHHHHHHHHHHHhcccCCCCcCCccc
Confidence 34556666666666667886 5666555
No 253
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=33.72 E-value=1.6e+02 Score=20.41 Aligned_cols=8 Identities=25% Similarity=0.181 Sum_probs=3.3
Q ss_pred cccCCCCC
Q 047378 70 VPETKGRT 77 (87)
Q Consensus 70 ~pet~~~~ 77 (87)
...+|+|.
T Consensus 204 ~~~v~ER~ 211 (467)
T COG2211 204 FFNVKERV 211 (467)
T ss_pred HHHhhccc
Confidence 33444443
No 254
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=33.13 E-value=42 Score=24.57 Aligned_cols=39 Identities=15% Similarity=0.051 Sum_probs=31.9
Q ss_pred hhhcccCCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 047378 7 VIMAEIFPINIKGSAGSLVILLHNCG-NWIVTCTFHFMME 45 (87)
Q Consensus 7 ~~~~E~fp~~~R~~~~~~~~~~~~~~-~~~~~~~~~~l~~ 45 (87)
.++=...|.+.|+.++|+.....++. .+.+|.+++.+.+
T Consensus 609 ~i~LR~V~~e~ks~AlG~~~~~irllg~IPsPIifG~~ID 648 (735)
T KOG3626|consen 609 LIVLRCVPPEEKSFALGFQWMLIRLLGFIPSPIIFGAVID 648 (735)
T ss_pred EEEEEccCchhchhhhHHHHHHHHHHhcCCchHhhhhhHh
Confidence 34556778999999999999988754 5688999999886
No 255
>PF10997 DUF2837: Protein of unknown function (DUF2837); InterPro: IPR021260 This bacterial family of proteins has no known function.
Probab=32.60 E-value=67 Score=20.37 Aligned_cols=33 Identities=12% Similarity=0.203 Sum_probs=18.9
Q ss_pred hhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 047378 7 VIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTF 40 (87)
Q Consensus 7 ~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~ 40 (87)
.|.+-++|. .|.++...+...+.+..++...+.
T Consensus 167 lYA~~L~P~-~r~Ta~~lSgiING~ATIllt~fi 199 (254)
T PF10997_consen 167 LYAGLLVPE-YRTTASQLSGIINGIATILLTIFI 199 (254)
T ss_pred HHHHHhCch-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444 666666666666666665555543
No 256
>PF13974 YebO: YebO-like protein
Probab=31.34 E-value=29 Score=17.90 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=12.7
Q ss_pred HHHHHHHHHHhhcccCCCCCHHHH
Q 047378 58 ICIVAVLFVAFLVPETKGRTLEEI 81 (87)
Q Consensus 58 ~~~~~~~~~~~~~pet~~~~~~~~ 81 (87)
+.++.++.+|||+-+-.-++.+.+
T Consensus 6 ~~~lv~livWFFVnRaSvRANEQI 29 (80)
T PF13974_consen 6 LVLLVGLIVWFFVNRASVRANEQI 29 (80)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHH
Confidence 344445555666665555554543
No 257
>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]
Probab=30.83 E-value=1.8e+02 Score=19.95 Aligned_cols=40 Identities=3% Similarity=-0.001 Sum_probs=31.0
Q ss_pred hhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047378 6 SVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME 45 (87)
Q Consensus 6 ~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~ 45 (87)
++|+-+.-+++.+.+..|-+++..-.+-+.+..+...+.+
T Consensus 116 ysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs 155 (433)
T KOG3810|consen 116 YSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVS 155 (433)
T ss_pred hheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhh
Confidence 4566677788899999999998877777777777776666
No 258
>PF14147 Spore_YhaL: Sporulation protein YhaL
Probab=30.03 E-value=71 Score=15.04 Aligned_cols=10 Identities=10% Similarity=-0.127 Sum_probs=4.8
Q ss_pred hHHHHHHHHH
Q 047378 49 TGAFSIFWVI 58 (87)
Q Consensus 49 ~~~~~~~~~~ 58 (87)
+|+|++.+++
T Consensus 3 wWvY~vi~gI 12 (52)
T PF14147_consen 3 WWVYFVIAGI 12 (52)
T ss_pred chHHHHHHHH
Confidence 4555544443
No 259
>PF10961 DUF2763: Protein of unknown function (DUF2763); InterPro: IPR024491 This entry represents an eukaryotic family of selenoproteins. It includes SelK, which seems to play an important role in protecting cells from endoplasmic reticulum stress-induced apoptosis [] and SelG, which may be involved in regulating the redox state of the cell [].
Probab=29.76 E-value=93 Score=16.35 Aligned_cols=25 Identities=12% Similarity=0.353 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCCC
Q 047378 52 FSIFWVICIVAVLFVAFLVPETKGR 76 (87)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~pet~~~ 76 (87)
=++++++.++...+..++-||....
T Consensus 23 d~Fwgi~~fI~lFF~Tl~~p~~~~~ 47 (91)
T PF10961_consen 23 DFFWGIINFIVLFFQTLFSPDSSRS 47 (91)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcccc
Confidence 3456667777777766767776443
No 260
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=29.40 E-value=2e+02 Score=20.06 Aligned_cols=41 Identities=15% Similarity=-0.079 Sum_probs=35.6
Q ss_pred chhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047378 5 PSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME 45 (87)
Q Consensus 5 ~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~ 45 (87)
-|.+.+|++..+.=.+-.++....+.++..++..+...+.+
T Consensus 165 FW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 165 FWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999999999998888887776665
No 261
>PF03741 TerC: Integral membrane protein TerC family; InterPro: IPR005496 A family containining a number of integral membrane proteins is named after TerC protein. TerC has been implicated in resistance to tellurium, and may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of a group of clinical isolates for antibiotic and heavy metal ion resistance []. The determinant of the strain's tellurite resistance was located on a large conjugative plasmid, and analyses showed the genes terB, terC, terD and terE were essential for conservation of this resistance. Members of this family contain a number of conserved aspartates which may be involved in metal ion binding.; GO: 0016021 integral to membrane
Probab=28.54 E-value=1.3e+02 Score=17.80 Aligned_cols=40 Identities=10% Similarity=-0.002 Sum_probs=24.8
Q ss_pred hhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047378 6 SVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME 45 (87)
Q Consensus 6 ~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~ 45 (87)
.+.+.+-.|.+.|.++.-+......+.=.+..+...++.+
T Consensus 18 i~~~~~~lp~~~r~kal~~Gi~~A~~lR~~~i~~~~~ll~ 57 (183)
T PF03741_consen 18 IAMIFRKLPPEQRRKALFWGIIGAIVLRIIFIFLASWLLS 57 (183)
T ss_pred HHHHHhCCCHHHhhhhHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4556677899888888766665554444444444444444
No 262
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=26.88 E-value=69 Score=21.33 Aligned_cols=37 Identities=11% Similarity=0.319 Sum_probs=23.7
Q ss_pred HHHHHHHHHH-HHHHHhhchHHHHHHHHHHHHHHHHHH
Q 047378 31 CGNWIVTCTF-HFMMEWSRTGAFSIFWVICIVAVLFVA 67 (87)
Q Consensus 31 ~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~ 67 (87)
+..++.|+.. |++....++..+++|.++..++..+..
T Consensus 21 ~~~~llp~~~~pfls~~qk~y~~f~f~~iss~gwff~i 58 (401)
T PF06785_consen 21 VAAFLLPLVCYPFLSDSQKNYGYFVFSIISSLGWFFAI 58 (401)
T ss_pred HHHHHHHHhHhhhcCHHHHhcceeehHHHHHhHHHHHh
Confidence 3455666654 444446677778888888877766643
No 263
>PF14159 CAAD: CAAD domains of cyanobacterial aminoacyl-tRNA synthetase
Probab=25.42 E-value=1.1e+02 Score=15.93 Aligned_cols=36 Identities=17% Similarity=0.184 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHH
Q 047378 49 TGAFSIFWVICIVAVLFVAFLVPETKGRTLEEIQIS 84 (87)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~pet~~~~~~~~~~~ 84 (87)
+..+=+.|......+.+-++...|.|..=.+++++.
T Consensus 49 ~~llElvGlgyt~wF~~ryLL~~~~R~el~~~i~~~ 84 (90)
T PF14159_consen 49 PGLLELVGLGYTGWFVYRYLLFAENRQELLQKIQSL 84 (90)
T ss_pred HHHHHHHHHHHHhHHHHHHHcChHhHHHHHHHHHHH
Confidence 334444444445545555554456555444444443
No 264
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=24.88 E-value=1e+02 Score=15.15 Aligned_cols=20 Identities=15% Similarity=0.220 Sum_probs=9.8
Q ss_pred HHHHHHhhcccCCCCCHHHH
Q 047378 62 AVLFVAFLVPETKGRTLEEI 81 (87)
Q Consensus 62 ~~~~~~~~~pet~~~~~~~~ 81 (87)
+....+++-|++-....+++
T Consensus 12 Ga~~glL~aP~sG~e~R~~l 31 (74)
T PF12732_consen 12 GAAAGLLFAPKSGKETREKL 31 (74)
T ss_pred HHHHHHHhCCCCcHHHHHHH
Confidence 33445555687544433333
No 265
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=23.79 E-value=2.5e+02 Score=19.30 Aligned_cols=34 Identities=18% Similarity=0.046 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Q 047378 22 GSLVILLHNCGNWIVTCTFHFMMEWSRTGAFSIF 55 (87)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 55 (87)
..+..+....+|.+-|...+......++..+..+
T Consensus 10 ~~LFamFFGAGNLIFPp~lG~~aG~~~~~a~~GF 43 (427)
T PF05525_consen 10 FALFAMFFGAGNLIFPPFLGQQAGSNWWPAMIGF 43 (427)
T ss_pred HHHHHHHhCCccccchHHHHHHhcchHHHHHHHH
Confidence 3333334444454444444443333344444333
No 266
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=23.44 E-value=2.5e+02 Score=19.20 Aligned_cols=39 Identities=8% Similarity=0.026 Sum_probs=29.9
Q ss_pred hhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047378 7 VIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME 45 (87)
Q Consensus 7 ~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~ 45 (87)
+|+--..|.+.=.+..|..++..-++.+++..+...+..
T Consensus 116 sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs 154 (412)
T PF01770_consen 116 SYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVS 154 (412)
T ss_pred HHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445577777788888888888888888888887777
No 267
>PRK10263 DNA translocase FtsK; Provisional
Probab=22.41 E-value=2.7e+02 Score=22.42 Aligned_cols=24 Identities=13% Similarity=0.065 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHH-hhchHHHHHH
Q 047378 32 GNWIVTCTFHFMME-WSRTGAFSIF 55 (87)
Q Consensus 32 ~~~~~~~~~~~l~~-~~~~~~~~~~ 55 (87)
|++++..+...+.. .+..+..+++
T Consensus 143 GGIIG~lLs~lL~~LfG~vGa~LIL 167 (1355)
T PRK10263 143 GGVIGSLLSTTLQPLLHSSGGTIAL 167 (1355)
T ss_pred cchHHHHHHHHHHHHHhHHHHHHHH
Confidence 44444444444444 3333333333
No 268
>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes. Their function is not known.
Probab=21.46 E-value=2e+02 Score=17.23 Aligned_cols=37 Identities=3% Similarity=-0.004 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHH
Q 047378 25 VILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIV 61 (87)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~ 61 (87)
+..+..+.++++.+++..+.. ....++-.+|++....
T Consensus 73 gi~~~gv~Si~aAllY~~~l~k~~g~W~Gi~YG~~~W~ 110 (173)
T PF11085_consen 73 GIVFIGVFSIVAALLYYALLKKFKGPWPGILYGLAWWA 110 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 333445667777777776666 6666676677665544
No 269
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=20.70 E-value=1.7e+02 Score=16.12 Aligned_cols=65 Identities=18% Similarity=0.277 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-hhchHHHHHHHHHHHHHHHH----HHhhcccCCCCCHHHH
Q 047378 17 IKGSAGSLVILLHNCGNWIVTCTFHFMM--E-WSRTGAFSIFWVICIVAVLF----VAFLVPETKGRTLEEI 81 (87)
Q Consensus 17 ~R~~~~~~~~~~~~~~~~~~~~~~~~l~--~-~~~~~~~~~~~~~~~~~~~~----~~~~~pet~~~~~~~~ 81 (87)
.|..+.++..........+...+...-. . ....+.+++.++++++=..+ .+...+.-+|-+.+++
T Consensus 41 wK~I~la~~Lli~G~~li~~g~l~~~~~i~~~~~~~~~llilG~L~fIPG~Y~~~i~y~a~rg~~Gysf~~I 112 (115)
T PF05915_consen 41 WKSIALAVFLLIFGTVLIIIGLLLFFGHIDGDRDRGWALLILGILCFIPGFYHTRIAYYAWRGYKGYSFDDI 112 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccchHHHHHHHHHhccHHHHHHHHHHHcCCCCCCHhhC
Confidence 4555555555444433333332221111 1 33455677777777665553 3333466677776654
No 270
>PF04120 Iron_permease: Low affinity iron permease ; InterPro: IPR007251 Although originally identified as a low-affinity iron(II) permease [, ], Fet4 has since been shown to import several other transition metal ions, including copper [, ] and zinc []. Copper, cobalt, and cadmium inhibit Fet4 [, ]. Fet4 is an integral protein of the plasma membrane [, ]. FET4 is not essential, not even in fet3 fet4 double mutants []. Over expression of FET4 improves growth under alkaline conditions []. Transcription of FET4 is induced by Aft1 in response to low levels of iron [, , ] or by Zap1 in response to low zinc [, ], but not in response to low copper []. When the high-affinity iron permease component Fet3 is deleted, FET4 is induced by the addition of copper, zinc, cobalt, or manganese []. It is also induced under anaerobic conditions [, , ] and repressed by Rox1 in aerobic conditions [, ]. Rox1 attenuates the activation of FET4 by Aft1 or Zap1 []. ; GO: 0055085 transmembrane transport
Probab=20.68 E-value=1.8e+02 Score=16.49 Aligned_cols=33 Identities=24% Similarity=0.360 Sum_probs=17.9
Q ss_pred chHHHHHHHHHHHHHHHHHHhhcccCCCCCHHHH
Q 047378 48 RTGAFSIFWVICIVAVLFVAFLVPETKGRTLEEI 81 (87)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~~~~ 81 (87)
-.|-..+....+++.++. .+++..+..++.+.+
T Consensus 39 dtWQLviNt~ttIitFlm-vfLIQn~q~Rd~~al 71 (132)
T PF04120_consen 39 DTWQLVINTATTIITFLM-VFLIQNTQNRDTKAL 71 (132)
T ss_pred chHHHHHccHHHHHHHHH-HHHHHhhhhhHHHHH
Confidence 344455666666664433 444666666555444
No 271
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=20.45 E-value=3.5e+02 Score=19.71 Aligned_cols=48 Identities=15% Similarity=0.315 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHH-HHhhcccCCCCC
Q 047378 30 NCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLF-VAFLVPETKGRT 77 (87)
Q Consensus 30 ~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~-~~~~~pet~~~~ 77 (87)
=+..++.+.+...+.+ .-....+++......+.+.+ ..+..||.+.+-
T Consensus 56 P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v~a~fll~fv~P~~~~~i 105 (618)
T KOG3762|consen 56 PLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSVTATFLLVFVPPVDKNRI 105 (618)
T ss_pred HHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHheeeccCcccCcc
Confidence 3445555556666666 44444444444444443333 335568877654
No 272
>PF10225 DUF2215: Uncharacterized conserved protein (DUF2215); InterPro: IPR024233 This entry represents a domain that is found in a number of different proteins, including a family of transmembrane proteins.
Probab=20.13 E-value=2.4e+02 Score=17.71 Aligned_cols=27 Identities=15% Similarity=0.193 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCCCC
Q 047378 51 AFSIFWVICIVAVLFVAFLVPETKGRT 77 (87)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~pet~~~~ 77 (87)
.+.-..+.+++....++..-|.++.++
T Consensus 100 v~~yv~~~G~vsf~vcy~~gp~~~~rs 126 (249)
T PF10225_consen 100 VLGYVLVVGLVSFAVCYRYGPPVDPRS 126 (249)
T ss_pred HHHHHHHHHHHHHHhhcccCCCccHhH
Confidence 333344445555556665555554443
Done!