Query 047378
Match_columns 87
No_of_seqs 109 out of 1232
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 18:30:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047378.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047378hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 99.8 5.3E-20 1.8E-24 117.6 9.3 87 1-87 387-480 (491)
2 2cfq_A Lactose permease; trans 98.4 2.7E-07 9.3E-12 58.3 4.7 73 5-77 333-407 (417)
3 1pw4_A Glycerol-3-phosphate tr 98.4 7.4E-07 2.5E-11 56.1 6.5 72 3-74 138-211 (451)
4 4aps_A DI-OR tripeptide H+ sym 98.4 1.2E-07 4.1E-12 60.6 2.4 76 2-77 404-479 (491)
5 1pw4_A Glycerol-3-phosphate tr 98.4 2.5E-07 8.4E-12 58.3 3.5 65 5-69 367-433 (451)
6 2xut_A Proton/peptide symporte 98.2 4.2E-07 1.4E-11 58.6 1.9 79 3-81 424-514 (524)
7 2gfp_A EMRD, multidrug resista 98.1 6.7E-07 2.3E-11 55.3 0.9 72 4-75 108-180 (375)
8 4aps_A DI-OR tripeptide H+ sym 98.1 2.7E-05 9.1E-10 49.7 7.9 67 3-69 127-196 (491)
9 3o7q_A L-fucose-proton symport 98.0 3.7E-05 1.3E-09 48.2 7.0 72 4-75 137-236 (438)
10 2xut_A Proton/peptide symporte 97.8 6.2E-05 2.1E-09 48.5 6.1 66 3-68 128-197 (524)
11 4gc0_A D-xylose-proton symport 97.6 0.00028 9.7E-09 44.9 7.4 71 3-73 145-223 (491)
12 3o7q_A L-fucose-proton symport 97.1 0.0013 4.5E-08 41.1 6.0 58 3-62 366-425 (438)
13 2gfp_A EMRD, multidrug resista 96.3 0.0022 7.4E-08 39.5 2.5 46 2-48 309-354 (375)
14 2cfq_A Lactose permease; trans 78.5 0.1 3.5E-06 32.8 -2.8 56 18-73 136-191 (417)
15 3ff5_A PEX14P, peroxisomal bio 49.7 4.9 0.00017 18.4 0.5 15 72-86 38-52 (54)
16 2w84_A Peroxisomal membrane pr 42.2 7.4 0.00025 18.8 0.5 15 72-86 43-57 (70)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.82 E-value=5.3e-20 Score=117.55 Aligned_cols=87 Identities=31% Similarity=0.476 Sum_probs=77.1
Q ss_pred CCccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhchHHHHHHHHHHHHHHHHHHhhcccC
Q 047378 1 MAGLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-------WSRTGAFSIFWVICIVAVLFVAFLVPET 73 (87)
Q Consensus 1 ~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~~~~~~~~~~~~~~~~~~~~~~~~~pet 73 (87)
++|++|.+.+|+||++.|++++|++..++++++++++.++|.+.+ .+....|++++++++++.++.++++|||
T Consensus 387 ~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PET 466 (491)
T 4gc0_A 387 WGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPET 466 (491)
T ss_dssp TTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCC
Confidence 367889999999999999999999999999999999999987754 2345678999999999999999999999
Q ss_pred CCCCHHHHHHHhhC
Q 047378 74 KGRTLEEIQISITK 87 (87)
Q Consensus 74 ~~~~~~~~~~~~~~ 87 (87)
||+++||+|+.+++
T Consensus 467 kg~tLeei~~~f~~ 480 (491)
T 4gc0_A 467 KGKTLEELEALWEP 480 (491)
T ss_dssp TTCCHHHHGGGTC-
T ss_pred CCCCHHHHHHHhCC
Confidence 99999999988753
No 2
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.43 E-value=2.7e-07 Score=58.33 Aligned_cols=73 Identities=10% Similarity=0.107 Sum_probs=59.2
Q ss_pred chhhhcccCCcchHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhcccCCCCC
Q 047378 5 PSVIMAEIFPINIKGSAGSLV-ILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVPETKGRT 77 (87)
Q Consensus 5 ~~~~~~E~fp~~~R~~~~~~~-~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~ 77 (87)
.+.+++|.+|++.|+++.++. ....++++.++|.+.+.+.+ .+....|.+.+++.+++.+..++..||++..+
T Consensus 333 ~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~ 407 (417)
T 2cfq_A 333 CFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLS 407 (417)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCTTC
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCchH
Confidence 357899999999999999996 66778999999999998887 56667788888888887777666678766543
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=98.42 E-value=7.4e-07 Score=56.09 Aligned_cols=72 Identities=19% Similarity=0.171 Sum_probs=61.4
Q ss_pred ccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh-chHHHHHHHHHHHHHHHHHHhhcccCC
Q 047378 3 GLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WS-RTGAFSIFWVICIVAVLFVAFLVPETK 74 (87)
Q Consensus 3 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~-~~~~~~~~~~~~~~~~~~~~~~~pet~ 74 (87)
|....+++|.+|.+.|+++.++......++..+++.+...+.+ .+ ++..|++.+++.++..++.++..||++
T Consensus 138 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~ 211 (451)
T 1pw4_A 138 PPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTP 211 (451)
T ss_dssp HHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSS
T ss_pred chHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCH
Confidence 3456789999999999999999999999999999999988777 66 888899988888887777777777754
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.39 E-value=1.2e-07 Score=60.56 Aligned_cols=76 Identities=16% Similarity=0.174 Sum_probs=58.9
Q ss_pred CccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhcccCCCCC
Q 047378 2 AGLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMMEWSRTGAFSIFWVICIVAVLFVAFLVPETKGRT 77 (87)
Q Consensus 2 ~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~ 77 (87)
.|..+.+..|.+|.+.|++++|+......+++.+++.+.+.+.+.+....|.+++++.++..++.++..++.+++.
T Consensus 404 ~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (491)
T 4aps_A 404 SPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFLSKRIQGLM 479 (491)
T ss_dssp TTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSSTTHHHHHTHHHHHHHHHHHHHC--------
T ss_pred hHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567789999999999999999999999999999999988877766777888888888888887777677766543
No 5
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=98.38 E-value=2.5e-07 Score=58.28 Aligned_cols=65 Identities=17% Similarity=0.299 Sum_probs=56.0
Q ss_pred chhhhcccCCcchHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhh
Q 047378 5 PSVIMAEIFPINIKGSAGSLVILLHNC-GNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFL 69 (87)
Q Consensus 5 ~~~~~~E~fp~~~R~~~~~~~~~~~~~-~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~ 69 (87)
.+.+..|.+|++.|+++.|+......+ +..+++.+.+.+.+ .+....|++.+++.+++.++..+.
T Consensus 367 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 367 IGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999 99999999999998 677788888888888777765553
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.22 E-value=4.2e-07 Score=58.57 Aligned_cols=79 Identities=15% Similarity=0.026 Sum_probs=51.4
Q ss_pred ccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh--c---------hHHHHHHHHHHHHHHHHHHhhc
Q 047378 3 GLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WS--R---------TGAFSIFWVICIVAVLFVAFLV 70 (87)
Q Consensus 3 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~--~---------~~~~~~~~~~~~~~~~~~~~~~ 70 (87)
|..+.+.+|..|++.|++++|+......+++.+++.+.+.+.+ .+ + ...|++++++.++..++.++..
T Consensus 424 ~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (524)
T 2xut_A 424 ATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAIVFALYA 503 (524)
T ss_dssp HHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence 3456788999999999999999999999999999999988765 21 1 2236777777777777766666
Q ss_pred ccCCCCCHHHH
Q 047378 71 PETKGRTLEEI 81 (87)
Q Consensus 71 pet~~~~~~~~ 81 (87)
++.++++.++.
T Consensus 504 ~~~~~~~~~~~ 514 (524)
T 2xut_A 504 RSYQMQDHYRQ 514 (524)
T ss_dssp -----------
T ss_pred HHhccchhhhh
Confidence 77766654443
No 7
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.09 E-value=6.7e-07 Score=55.35 Aligned_cols=72 Identities=14% Similarity=0.236 Sum_probs=59.8
Q ss_pred cchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhcccCCC
Q 047378 4 LPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVPETKG 75 (87)
Q Consensus 4 ~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet~~ 75 (87)
....+++|.+|.+.|+++.++......++..+++.+...+.+ .+++..+++.++..++..+...+..||++.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (375)
T 2gfp_A 108 MARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRP 180 (375)
T ss_dssp HHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCST
T ss_pred hHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCC
Confidence 445788999999999999999999999999999999988777 678888888888877777656666788654
No 8
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.06 E-value=2.7e-05 Score=49.74 Aligned_cols=67 Identities=16% Similarity=0.128 Sum_probs=52.8
Q ss_pred ccchhhhcccCCcch--HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhh
Q 047378 3 GLPSVIMAEIFPINI--KGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFL 69 (87)
Q Consensus 3 ~~~~~~~~E~fp~~~--R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~ 69 (87)
|....+++|.+|.+. |+++.++......++..+++.+...+.+ .++++.|++.++..++..+...+.
T Consensus 127 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~ 196 (491)
T 4aps_A 127 PNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFG 196 (491)
T ss_dssp HHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 345678999999998 7777777778889999999999999888 778888888777666666554433
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=97.95 E-value=3.7e-05 Score=48.22 Aligned_cols=72 Identities=11% Similarity=0.119 Sum_probs=54.6
Q ss_pred cchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhh--------------------------chHHHHHHH
Q 047378 4 LPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMM-EWS--------------------------RTGAFSIFW 56 (87)
Q Consensus 4 ~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~--------------------------~~~~~~~~~ 56 (87)
....+++|.+|.+.|+++.++......++..+++.+...+. ... +++.|++.+
T Consensus 137 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 216 (438)
T 3o7q_A 137 AANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIV 216 (438)
T ss_dssp HHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHH
Confidence 45678999999999999999999999999999999988887 322 566776776
Q ss_pred HHHHHHHHHHHh-hcccCCC
Q 047378 57 VICIVAVLFVAF-LVPETKG 75 (87)
Q Consensus 57 ~~~~~~~~~~~~-~~pet~~ 75 (87)
....+..+...+ ..||++.
T Consensus 217 ~~~~~~~~~~~~~~~p~~~~ 236 (438)
T 3o7q_A 217 AIVLLVALLIMLTKFPALQS 236 (438)
T ss_dssp HHHHHHHHHHHHCCCCCCTT
T ss_pred HHHHHHHHHHHHHcCCcccc
Confidence 666665554433 3466543
No 10
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=97.79 E-value=6.2e-05 Score=48.45 Aligned_cols=66 Identities=23% Similarity=0.318 Sum_probs=51.2
Q ss_pred ccchhhhcccCCcchHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHh
Q 047378 3 GLPSVIMAEIFPINIKGSAGSL---VILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAF 68 (87)
Q Consensus 3 ~~~~~~~~E~fp~~~R~~~~~~---~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~ 68 (87)
|....+++|.+|.+.|++..+. ......++..+++.+...+.+ .+++..|++.++..++..+...+
T Consensus 128 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 128 PLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 3456789999999999876666 777888889999998888887 67778888877776666555443
No 11
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=97.64 E-value=0.00028 Score=44.94 Aligned_cols=71 Identities=23% Similarity=0.265 Sum_probs=44.9
Q ss_pred ccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-------hchHHHHHHHHHHHHHHHHHHhhcccC
Q 047378 3 GLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-W-------SRTGAFSIFWVICIVAVLFVAFLVPET 73 (87)
Q Consensus 3 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~-------~~~~~~~~~~~~~~~~~~~~~~~~pet 73 (87)
+....|++|..|++.|++..++.......+...+......... . .++...........+..++..++.||+
T Consensus 145 ~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peS 223 (491)
T 4gc0_A 145 MLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPES 223 (491)
T ss_dssp HHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCC
T ss_pred HHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCC
Confidence 3456899999999999999999887766666666655554433 1 122223333333344444455667987
No 12
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=97.14 E-value=0.0013 Score=41.14 Aligned_cols=58 Identities=16% Similarity=0.021 Sum_probs=44.4
Q ss_pred ccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh-chHHHHHHHHHHHHH
Q 047378 3 GLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WS-RTGAFSIFWVICIVA 62 (87)
Q Consensus 3 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~-~~~~~~~~~~~~~~~ 62 (87)
|..+.+..|.+|++ |+++.++.. .+.+++.++|.+.+.+.+ .+ ....|.+.+++.++.
T Consensus 366 ~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~ 425 (438)
T 3o7q_A 366 PTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVI 425 (438)
T ss_dssp HHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHH
T ss_pred HHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 44567789999987 999999887 677999999999999988 56 666666654444443
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=96.34 E-value=0.0022 Score=39.52 Aligned_cols=46 Identities=26% Similarity=0.297 Sum_probs=39.4
Q ss_pred CccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 047378 2 AGLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMMEWSR 48 (87)
Q Consensus 2 ~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 48 (87)
.|....+..|.+| +.|+++.|+......++..+++.+.+.+.+...
T Consensus 309 ~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~ 354 (375)
T 2gfp_A 309 FPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQ 354 (375)
T ss_dssp SSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHH
T ss_pred hHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 4566788999999 899999999999999999999999888877433
No 14
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=78.46 E-value=0.1 Score=32.82 Aligned_cols=56 Identities=7% Similarity=-0.006 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhcccC
Q 047378 18 KGSAGSLVILLHNCGNWIVTCTFHFMMEWSRTGAFSIFWVICIVAVLFVAFLVPET 73 (87)
Q Consensus 18 R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~pet 73 (87)
|+.+.|.......++..+++.+...+.+.+++..|++.+...++..+...+..||+
T Consensus 136 ~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 191 (417)
T 2cfq_A 136 SNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDA 191 (417)
T ss_dssp HTCCHHHHSSSTTTHHHHHHHHHHHHHHHCSHHHHTTTTTTTTTHHHHSCSSCCCC
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHcCccc
Confidence 34445555555667777888887777766666667655554444333333333443
No 15
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=49.71 E-value=4.9 Score=18.42 Aligned_cols=15 Identities=40% Similarity=0.543 Sum_probs=11.7
Q ss_pred cCCCCCHHHHHHHhh
Q 047378 72 ETKGRTLEEIQISIT 86 (87)
Q Consensus 72 et~~~~~~~~~~~~~ 86 (87)
+.||.+-+||++.++
T Consensus 38 ~sKGLt~~EI~~Al~ 52 (54)
T 3ff5_A 38 KKKGLTDEEIDLAFQ 52 (54)
T ss_dssp HHTTCCHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHH
Confidence 568888888888765
No 16
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=42.18 E-value=7.4 Score=18.81 Aligned_cols=15 Identities=40% Similarity=0.536 Sum_probs=11.6
Q ss_pred cCCCCCHHHHHHHhh
Q 047378 72 ETKGRTLEEIQISIT 86 (87)
Q Consensus 72 et~~~~~~~~~~~~~ 86 (87)
+.||.+.+||++.++
T Consensus 43 ~sKGLt~eEI~~Al~ 57 (70)
T 2w84_A 43 KKKGLTDEEIDMAFQ 57 (70)
T ss_dssp HHTTCCHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHH
Confidence 568888888887664
Done!