BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047379
(154 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1YSH|C Chain C, Localization And Dynamic Behavior Of Ribosomal Protein
L30e
Length = 104
Score = 174 bits (442), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 80/96 (83%), Positives = 92/96 (95%)
Query: 54 ESINNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGV 113
E+INN+L LVMKSGKYTLGYKTVL++LR+SKGKLIIL+NNCPPLRKSEIEYYAMLAK+ V
Sbjct: 7 ENINNKLQLVMKSGKYTLGYKTVLKTLRSSKGKLIILANNCPPLRKSEIEYYAMLAKISV 66
Query: 114 HHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIKS 149
HH++GNNVDLGTACGKY+RV CLSI+DPGDSDII +
Sbjct: 67 HHFHGNNVDLGTACGKYYRVCCLSILDPGDSDIIST 102
>pdb|2ZKR|6 Chain 6, Structure Of A Mammalian Ribosomal 60s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 115
Score = 164 bits (416), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 74/98 (75%), Positives = 86/98 (87%)
Query: 54 ESINNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGV 113
ESIN+RL LVMKSGKY LGYK L+ +R K KL+IL+NNCP LRKSEIEYYAMLAK GV
Sbjct: 12 ESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEIEYYAMLAKTGV 71
Query: 114 HHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLP 151
HHY+GNN++LGTACGKY+RV L+IIDPGDSDII+S+P
Sbjct: 72 HHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMP 109
>pdb|3VI6|A Chain A, Crystal Structure Of Human L30e
Length = 125
Score = 164 bits (415), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 74/98 (75%), Positives = 86/98 (87%)
Query: 54 ESINNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGV 113
ESIN+RL LVMKSGKY LGYK L+ +R K KL+IL+NNCP LRKSEIEYYAMLAK GV
Sbjct: 13 ESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEIEYYAMLAKTGV 72
Query: 114 HHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLP 151
HHY+GNN++LGTACGKY+RV L+IIDPGDSDII+S+P
Sbjct: 73 HHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMP 110
>pdb|3IZR|FF Chain f, Localization Of The Large Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 112
Score = 159 bits (401), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 73/89 (82%), Positives = 84/89 (94%)
Query: 54 ESINNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGV 113
E+INN+L LVMKSGKYTLGYKTVL++LR+S GKLIIL+NNCPPLRKSEIE YAMLAK+ V
Sbjct: 12 ENINNKLQLVMKSGKYTLGYKTVLKTLRSSLGKLIILANNCPPLRKSEIETYAMLAKISV 71
Query: 114 HHYNGNNVDLGTACGKYFRVSCLSIIDPG 142
HH++GNNVDLGTACGKY+RV CLSI+DPG
Sbjct: 72 HHFHGNNVDLGTACGKYYRVCCLSILDPG 100
>pdb|4A18|G Chain G, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 26s Rrna And
Proteins Of Molecule 1
pdb|4A1B|G Chain G, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 26s Rrna And
Proteins Of Molecule 3.
pdb|4A1D|G Chain G, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 26s Rrna And
Proteins Of Molecule 4.
pdb|4A19|G Chain G, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 26s Rrna And
Proteins Of Molecule 2.
pdb|4ADX|6 Chain 6, The Cryo-Em Structure Of The Archaeal 50s Ribosomal
Subunit In Complex With Initiation Factor 6
Length = 104
Score = 132 bits (332), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 56/97 (57%), Positives = 80/97 (82%)
Query: 53 HESINNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVG 112
++I ++LALVM+SGK TLGYK+ ++++R KL+ +SNNCP +RKSEIEYYA LA++
Sbjct: 7 QDNIQSKLALVMRSGKATLGYKSTIKAIRNGTAKLVFISNNCPTVRKSEIEYYASLAQIS 66
Query: 113 VHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIKS 149
+HH+ G+NV+LGTACGKY R S ++I+D GDSDI+K+
Sbjct: 67 IHHFVGSNVELGTACGKYHRCSTMAILDAGDSDILKT 103
>pdb|1CK2|A Chain A, Yeast (Saccharomyces Cerevisiae) Ribosomal Protein L30
pdb|1CN7|A Chain A, Yeast Ribosomal Protein L30
pdb|1NMU|B Chain B, Mbp-L30
pdb|1NMU|D Chain D, Mbp-L30
Length = 104
Score = 130 bits (327), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 60/98 (61%), Positives = 78/98 (79%)
Query: 53 HESINNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVG 112
ESIN +LALV+KSGKYTLGYK+ ++SLR K KLII++ N P LRKSE+EYYAML+K
Sbjct: 6 QESINQKLALVIKSGKYTLGYKSTVKSLRQGKSKLIIIAANTPVLRKSELEYYAMLSKTK 65
Query: 113 VHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIKSL 150
V+++ G N +LGTA GK FRV +SI++ GDSDI+ +L
Sbjct: 66 VYYFQGGNNELGTAVGKLFRVGVVSILEAGDSDILTTL 103
>pdb|1T0K|B Chain B, Joint X-ray And Nmr Refinement Of Yeast L30e-mrna Complex
pdb|3IZS|FF Chain f, Localization Of The Large Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O58|Z Chain Z, Yeast 80s Ribosome. This Entry Consists Of The 60s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O5H|Z Chain Z, Yeast 80s Ribosome. This Entry Consists Of The 60s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5E|CC Chain c, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 60s
Subunit, Ribosome A
pdb|3U5I|CC Chain c, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 60s
Subunit, Ribosome B
pdb|4B6A|CC Chain c, Cryo-Em Structure Of The 60s Ribosomal Subunit In Complex
With Arx1 And Rei1
Length = 105
Score = 130 bits (327), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 60/98 (61%), Positives = 78/98 (79%)
Query: 53 HESINNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVG 112
ESIN +LALV+KSGKYTLGYK+ ++SLR K KLII++ N P LRKSE+EYYAML+K
Sbjct: 7 QESINQKLALVIKSGKYTLGYKSTVKSLRQGKSKLIIIAANTPVLRKSELEYYAMLSKTK 66
Query: 113 VHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIKSL 150
V+++ G N +LGTA GK FRV +SI++ GDSDI+ +L
Sbjct: 67 VYYFQGGNNELGTAVGKLFRVGVVSILEAGDSDILTTL 104
>pdb|3JYW|2 Chain 2, Structure Of The 60s Proteins For Eukaryotic Ribosome
Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome
At 8.9a Resolution
Length = 98
Score = 129 bits (325), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 60/98 (61%), Positives = 78/98 (79%)
Query: 54 ESINNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGV 113
ESIN +LALV+KSGKYTLGYK+ ++SLR K KLII++ N P LRKSE+EYYAML+K V
Sbjct: 1 ESINQKLALVIKSGKYTLGYKSTVKSLRQGKSKLIIIAANTPVLRKSELEYYAMLSKTKV 60
Query: 114 HHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIKSLP 151
+++ G N +LGTA GK FRV +SI++ GDSDI+ +L
Sbjct: 61 YYFQGGNNELGTAVGKLFRVGVVSILEAGDSDILTTLA 98
>pdb|3ZF7|GG Chain g, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 105
Score = 129 bits (324), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 55/93 (59%), Positives = 74/93 (79%)
Query: 54 ESINNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGV 113
++IN ++ LVMKSGKY LG + L++LR + KL+++S NCPP+RK+EIEYY L+K +
Sbjct: 10 DTINTKIQLVMKSGKYVLGTQQSLKTLRQGRSKLVVISANCPPIRKAEIEYYCTLSKTPI 69
Query: 114 HHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDI 146
HHY+GNN+DLGTACG++FR LSI D GDSDI
Sbjct: 70 HHYSGNNLDLGTACGRHFRACVLSITDVGDSDI 102
>pdb|2BO1|A Chain A, Crystal Structure Of A Hybrid Ribosomal Protein L30e With
Surface Residues From T. Celer, And Core Residues From
Yeast
Length = 101
Score = 87.4 bits (215), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 43/88 (48%), Positives = 60/88 (68%)
Query: 60 LALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGN 119
L V+ SGKYTLGY+ ++SL+ KLII++ N P RK ++EYYA L+ V+ + G
Sbjct: 8 LRKVIDSGKYTLGYRKTVQSLKMGGSKLIIIARNTRPDRKEDLEYYARLSGTPVYEFEGT 67
Query: 120 NVDLGTACGKYFRVSCLSIIDPGDSDII 147
NV+LGTA GK VS +SI+D G+S I+
Sbjct: 68 NVELGTAVGKPHTVSVVSILDAGESRIL 95
>pdb|3J21|Z Chain Z, Promiscuous Behavior Of Proteins In Archaeal Ribosomes
Revealed By Cryo-em: Implications For Evolution Of
Eukaryotic Ribosomes (50s Ribosomal Proteins)
Length = 99
Score = 76.3 bits (186), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 54/84 (64%)
Query: 64 MKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDL 123
M++GK LG +R +T KLII++ N P K +I YYA L+ + V+ + G +V+L
Sbjct: 11 METGKVVLGSNETIRLAKTGGAKLIIVAKNAPKEIKDDIYYYAKLSDIPVYEFEGTSVEL 70
Query: 124 GTACGKYFRVSCLSIIDPGDSDII 147
GT GK F V+ L+I+DPG+S I+
Sbjct: 71 GTLLGKPFVVASLAIVDPGESKIL 94
>pdb|3N4Z|A Chain A, Crystal Structure Of Quintuple Arg-To-Lys Variant Of T.
Celer L30e
pdb|3N4Z|B Chain B, Crystal Structure Of Quintuple Arg-To-Lys Variant Of T.
Celer L30e
Length = 101
Score = 70.9 bits (172), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 52/82 (63%)
Query: 66 SGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGT 125
+GK +G K ++ + KLII++ N P K +IEYYA L+ + V+ + G +V+LGT
Sbjct: 14 TGKIVMGAKKSIQYAKMGGAKLIIVARNAKPDIKEDIEYYAKLSGIPVYEFEGTSVELGT 73
Query: 126 ACGKYFRVSCLSIIDPGDSDII 147
GK VS L+++DPG+S I+
Sbjct: 74 LLGKPHTVSALAVVDPGESRIL 95
>pdb|1W3E|X Chain X, Ribosomal L30e Of Thermococcus Celer, P59a Mutant
Length = 101
Score = 69.3 bits (168), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 52/82 (63%)
Query: 66 SGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGT 125
+GK +G + ++ + KLII++ N P K +IEYYA L+ + V+ + G +V+LGT
Sbjct: 14 TGKIVMGARKSIQYAKMGGAKLIIVARNARPDIKEDIEYYARLSGIAVYEFEGTSVELGT 73
Query: 126 ACGKYFRVSCLSIIDPGDSDII 147
G+ VS L+++DPG+S I+
Sbjct: 74 LLGRPHTVSALAVVDPGESRIL 95
>pdb|1W40|A Chain A, T. Celer L30e K9a Variant
Length = 101
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 52/82 (63%)
Query: 66 SGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGT 125
+GK +G + ++ + KLII++ N P K +IEYYA L+ + V+ + G +V+LGT
Sbjct: 14 TGKIVMGARKSIQYAKMGGAKLIIVARNARPDIKEDIEYYARLSGIPVYEFEGTSVELGT 73
Query: 126 ACGKYFRVSCLSIIDPGDSDII 147
G+ VS L+++DPG+S I+
Sbjct: 74 LLGRPHTVSALAVVDPGESRIL 95
>pdb|3N4Y|A Chain A, Crystal Structure Of Wild-Type T. Celer L30e In Low Ionic
Strength Condition Without Precipitant
Length = 101
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 52/82 (63%)
Query: 66 SGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGT 125
+GK +G + ++ + KLII++ N P K +IEYYA L+ + V+ + G +V+LGT
Sbjct: 14 TGKIVMGARKSIQYAKMGGAKLIIVARNARPDIKEDIEYYARLSGIPVYEFEGTSVELGT 73
Query: 126 ACGKYFRVSCLSIIDPGDSDII 147
G+ VS L+++DPG+S I+
Sbjct: 74 LLGRPHTVSALAVVDPGESRIL 95
>pdb|1W42|A Chain A, T. Celer L30e R92a Variant
Length = 101
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 52/82 (63%)
Query: 66 SGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGT 125
+GK +G + ++ + KLII++ N P K +IEYYA L+ + V+ + G +V+LGT
Sbjct: 14 TGKIVMGARKSIQYAKMGGAKLIIVARNARPDIKEDIEYYARLSGIPVYEFEGTSVELGT 73
Query: 126 ACGKYFRVSCLSIIDPGDSDII 147
G+ VS L+++DPG+S I+
Sbjct: 74 LLGRPHTVSALAVVDPGESAIL 95
>pdb|3RA5|A Chain A, Crystal Structure Of T. Celer L30e E6aR92A VARIANT
pdb|3RA5|B Chain B, Crystal Structure Of T. Celer L30e E6aR92A VARIANT
Length = 101
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 52/82 (63%)
Query: 66 SGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGT 125
+GK +G + ++ + KLII++ N P K +IEYYA L+ + V+ + G +V+LGT
Sbjct: 14 TGKIVMGARKSIQYAKMGGAKLIIVARNARPDIKEDIEYYARLSGIPVYEFEGTSVELGT 73
Query: 126 ACGKYFRVSCLSIIDPGDSDII 147
G+ VS L+++DPG+S I+
Sbjct: 74 LLGRPHTVSALAVVDPGESAIL 95
>pdb|1H7M|A Chain A, Ribosomal Protein L30e From Thermococcus Celer
pdb|1GO0|A Chain A, Nmr Structure Of Ribosomal Protein L30e From Thermococcus
Celer
pdb|1GO1|A Chain A, Nmr Structure Of Ribosomal Protein L30e From Thermococcus
Celer
Length = 102
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 52/82 (63%)
Query: 66 SGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGT 125
+GK +G + ++ + KLII++ N P K +IEYYA L+ + V+ + G +V+LGT
Sbjct: 15 TGKIVMGARKSIQYAKMGGAKLIIVARNARPDIKEDIEYYARLSGIPVYEFEGTSVELGT 74
Query: 126 ACGKYFRVSCLSIIDPGDSDII 147
G+ VS L+++DPG+S I+
Sbjct: 75 LLGRPHTVSALAVVDPGESRIL 96
>pdb|1W41|A Chain A, T.Celer L30e E90a Variant
Length = 101
Score = 67.0 bits (162), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 51/82 (62%)
Query: 66 SGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGT 125
+GK +G + ++ + KLII++ N P K +IEYYA L+ + V+ + G +V+LGT
Sbjct: 14 TGKIVMGARKSIQYAKMGGAKLIIVARNARPDIKEDIEYYARLSGIPVYEFEGTSVELGT 73
Query: 126 ACGKYFRVSCLSIIDPGDSDII 147
G+ VS L+++DPG S I+
Sbjct: 74 LLGRPHTVSALAVVDPGASRIL 95
>pdb|3LFO|A Chain A, Crystal Structure Of T. Celer L30e E90aR92A VARIANT
Length = 101
Score = 67.0 bits (162), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 51/82 (62%)
Query: 66 SGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGT 125
+GK +G + ++ + KLII++ N P K +IEYYA L+ + V+ + G +V+LGT
Sbjct: 14 TGKIVMGARKSIQYAKMGGAKLIIVARNARPDIKEDIEYYARLSGIPVYEFEGTSVELGT 73
Query: 126 ACGKYFRVSCLSIIDPGDSDII 147
G+ VS L+++DPG S I+
Sbjct: 74 LLGRPHTVSALAVVDPGASAIL 95
>pdb|3RA6|A Chain A, Crystal Structure Of T. Celer L30e E62aK46A VARIANT
Length = 101
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 51/82 (62%)
Query: 66 SGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGT 125
+GK +G + ++ + KLII++ N P +IEYYA L+ + V+ + G +V+LGT
Sbjct: 14 TGKIVMGARKSIQYAKMGGAKLIIVARNARPDIAEDIEYYARLSGIPVYAFEGTSVELGT 73
Query: 126 ACGKYFRVSCLSIIDPGDSDII 147
G+ VS L+++DPG+S I+
Sbjct: 74 LLGRPHTVSALAVVDPGESRIL 95
>pdb|3CPQ|A Chain A, Crystal Structure Of L30e A Ribosomal Protein From
Methanocaldococcus Jannaschii Dsm2661 (Mj1044)
pdb|3CPQ|B Chain B, Crystal Structure Of L30e A Ribosomal Protein From
Methanocaldococcus Jannaschii Dsm2661 (Mj1044)
Length = 110
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 58/94 (61%)
Query: 55 SINNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVH 114
+N + + +GK LG K ++ ++ +GKL++L+ N P + +++YYA L+ + V+
Sbjct: 8 DVNKAIRTAVDTGKVILGSKRTIKFVKHGEGKLVVLAGNIPKDLEEDVKYYAKLSNIPVY 67
Query: 115 HYNGNNVDLGTACGKYFRVSCLSIIDPGDSDIIK 148
+ +++LG CGK F V+ L ++D G S+I++
Sbjct: 68 QHKITSLELGAVCGKPFPVAALLVLDEGLSNIME 101
>pdb|1RA4|A Chain A, Crystal Structure Of The Methanococcus Jannaschii L7ae
Protein
pdb|1XBI|A Chain A, High Resolution Structure Of Methanocaldococcus Jannaschii
L7ae
Length = 120
Score = 33.1 bits (74), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%)
Query: 63 VMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVD 122
V K+ K G V +++ KL+I++ + P Y K + Y + D
Sbjct: 24 VAKAQKIKKGANEVTKAVERGIAKLVIIAEDVKPEEVVAHLPYLCEEKGIPYAYVASKQD 83
Query: 123 LGTACGKYFRVSCLSIIDPGDSDIIKSL 150
LG A G S ++II+ GD++ +K L
Sbjct: 84 LGKAAGLEVAASSVAIINEGDAEELKVL 111
>pdb|1SDS|A Chain A, Structure Of Protein L7ae Bound To A K-Turn Derived From
An Archaeal Box HACA SRNA
pdb|1SDS|B Chain B, Structure Of Protein L7ae Bound To A K-Turn Derived From
An Archaeal Box HACA SRNA
pdb|1SDS|C Chain C, Structure Of Protein L7ae Bound To A K-Turn Derived From
An Archaeal Box HACA SRNA
Length = 117
Score = 33.1 bits (74), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%)
Query: 63 VMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVD 122
V K+ K G V +++ KL+I++ + P Y K + Y + D
Sbjct: 21 VAKAQKIKKGANEVTKAVERGIAKLVIIAEDVKPEEVVAHLPYLCEEKGIPYAYVASKQD 80
Query: 123 LGTACGKYFRVSCLSIIDPGDSDIIKSL 150
LG A G S ++II+ GD++ +K L
Sbjct: 81 LGKAAGLEVAASSVAIINEGDAEELKVL 108
>pdb|3PAF|A Chain A, M. Jannaschii L7ae Mutant
pdb|3PAF|B Chain B, M. Jannaschii L7ae Mutant
Length = 117
Score = 30.8 bits (68), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 41/91 (45%)
Query: 60 LALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGN 119
L V K+ + G V +++ KL+I++ + P Y K + Y +
Sbjct: 18 LDAVAKAQQIKKGANEVTKAVERGIAKLVIIAEDVKPEEVVAHLPYLCEEKGIPYAYVAS 77
Query: 120 NVDLGTACGKYFRVSCLSIIDPGDSDIIKSL 150
DLG A G S ++II+ GD++ +K L
Sbjct: 78 KQDLGKAAGVSRPASSVAIINEGDAEELKVL 108
>pdb|3ID5|C Chain C, Crystal Structure Of Sulfolobus Solfataricus CD RNP
ASSEMBLED WITH Nop5, Fibrillarin, L7ae And A Split Half
CD RNA
pdb|3ID5|G Chain G, Crystal Structure Of Sulfolobus Solfataricus CD RNP
ASSEMBLED WITH Nop5, Fibrillarin, L7ae And A Split Half
CD RNA
pdb|3PLA|C Chain C, Crystal Structure Of A Catalytically Active
Substrate-Bound Box CD Rnp From Sulfolobus Solfataricus
pdb|3PLA|D Chain D, Crystal Structure Of A Catalytically Active
Substrate-Bound Box CD Rnp From Sulfolobus Solfataricus
pdb|3PLA|L Chain L, Crystal Structure Of A Catalytically Active
Substrate-Bound Box CD Rnp From Sulfolobus Solfataricus
Length = 130
Score = 30.8 bits (68), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
Query: 65 KSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAML---AKVGVHHYNGNNV 121
+SGK G +++ + KL+I++ + P EI + L K + Y +
Sbjct: 31 ESGKIKKGTNETTKAVERGQAKLVIIAEDVQP---EEIVAHLPLLCDEKKIPYVYVSSKK 87
Query: 122 DLGTACGKYFRVSCLSIIDPGDS 144
LG ACG + +I++PG++
Sbjct: 88 ALGEACGLQVATASAAILEPGEA 110
>pdb|3Q6K|A Chain A, Salivary Protein From Lutzomyia Longipalpis
pdb|3Q6K|B Chain B, Salivary Protein From Lutzomyia Longipalpis
pdb|3Q6T|A Chain A, Salivary Protein From Lutzomyia Longipalpis, Ligand Free
pdb|3Q6T|B Chain B, Salivary Protein From Lutzomyia Longipalpis, Ligand Free
Length = 381
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 21/45 (46%)
Query: 83 SKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTAC 127
SKG L +SN PP+RKSE Y + + GTAC
Sbjct: 333 SKGGLWFMSNGFPPIRKSEKFKYDFPRYRLMRIMDTQEAIAGTAC 377
>pdb|3Q6P|A Chain A, Salivary Protein From Lutzomyia Longipalpis.
Selenomethionine Derivative
pdb|3Q6P|B Chain B, Salivary Protein From Lutzomyia Longipalpis.
Selenomethionine Derivative
Length = 381
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 13/19 (68%)
Query: 83 SKGKLIILSNNCPPLRKSE 101
SKG L SN PP+RKSE
Sbjct: 333 SKGGLWFXSNGFPPIRKSE 351
>pdb|4APL|A Chain A, Crystal Structure Of Ama1 From Neospora Caninum
pdb|4APL|B Chain B, Crystal Structure Of Ama1 From Neospora Caninum
pdb|4APL|D Chain D, Crystal Structure Of Ama1 From Neospora Caninum
pdb|4APL|E Chain E, Crystal Structure Of Ama1 From Neospora Caninum
Length = 431
Score = 26.9 bits (58), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 96 PLRKSEIEYYAMLAKVGVHHYNGNNVDLG 124
P + E++ + V +HH +G NVDLG
Sbjct: 13 PFQTPELKAFLERYNVTLHHQSGVNVDLG 41
>pdb|3QK3|A Chain A, Crystal Structure Of Human Beta-Crystallin B3
pdb|3QK3|B Chain B, Crystal Structure Of Human Beta-Crystallin B3
pdb|3QK3|C Chain C, Crystal Structure Of Human Beta-Crystallin B3
Length = 184
Score = 26.6 bits (57), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 6/40 (15%)
Query: 73 YKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVG 112
YK +L L +GK LS CP L S +L KVG
Sbjct: 9 YKVILYELENFQGKRCELSAECPSLTDS------LLEKVG 42
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,110,767
Number of Sequences: 62578
Number of extensions: 131627
Number of successful extensions: 730
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 699
Number of HSP's gapped (non-prelim): 47
length of query: 154
length of database: 14,973,337
effective HSP length: 90
effective length of query: 64
effective length of database: 9,341,317
effective search space: 597844288
effective search space used: 597844288
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)