Query 047379
Match_columns 154
No_of_seqs 133 out of 941
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 18:32:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047379.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047379hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz5_f 60S ribosomal protein L 100.0 3.1E-32 1.1E-36 201.5 8.1 109 44-153 2-111 (112)
2 3u5e_c L32, RP73, YL38, 60S ri 100.0 2.1E-31 7.3E-36 194.1 8.6 100 51-150 5-104 (105)
3 4a18_G RPL30; ribosome, eukary 100.0 5.4E-31 1.9E-35 191.5 8.8 100 50-149 4-103 (104)
4 3on1_A BH2414 protein; structu 100.0 1.5E-30 5.1E-35 187.9 7.9 99 53-153 3-101 (101)
5 3v7q_A Probable ribosomal prot 100.0 2.7E-30 9.2E-35 186.9 9.0 97 53-151 4-100 (101)
6 3vi6_A 60S ribosomal protein L 100.0 2.7E-30 9.2E-35 194.2 6.4 111 43-153 2-112 (125)
7 3j21_Z 50S ribosomal protein L 100.0 2E-29 7E-34 181.3 9.4 95 55-149 2-96 (99)
8 1w41_A 50S ribosomal protein L 100.0 8.1E-29 2.8E-33 178.6 8.8 99 54-153 2-100 (101)
9 3cpq_A 50S ribosomal protein L 100.0 6E-29 2.1E-33 182.2 7.7 101 50-151 3-103 (110)
10 1vq8_F 50S ribosomal protein L 99.9 4.8E-27 1.6E-31 174.3 8.7 101 50-151 11-112 (120)
11 2lbw_A H/ACA ribonucleoprotein 99.9 1.2E-26 4.2E-31 172.8 10.8 97 50-147 2-99 (121)
12 2fc3_A 50S ribosomal protein L 99.9 6.7E-27 2.3E-31 174.6 8.5 101 50-151 10-111 (124)
13 1rlg_A 50S ribosomal protein L 99.9 4.9E-27 1.7E-31 174.0 7.5 101 50-151 9-110 (119)
14 3o85_A Ribosomal protein L7AE; 99.9 7.8E-26 2.7E-30 169.0 11.5 95 49-144 12-107 (122)
15 2aif_A Ribosomal protein L7A; 99.9 3.1E-25 1E-29 168.2 11.2 97 50-147 23-120 (135)
16 2ale_A SNU13, NHP2/L7AE family 99.9 5.8E-25 2E-29 166.9 11.2 93 49-142 13-106 (134)
17 1xbi_A 50S ribosomal protein L 99.9 2.9E-25 9.8E-30 165.2 7.4 98 50-151 14-112 (120)
18 2jnb_A NHP2-like protein 1; sp 99.9 3.6E-25 1.2E-29 170.2 6.1 96 49-145 31-127 (144)
19 3v7e_A Ribosome-associated pro 99.9 2.5E-23 8.4E-28 145.5 8.7 79 60-139 3-81 (82)
20 2xzm_U Ribosomal protein L7AE 99.9 2.3E-23 7.7E-28 156.7 7.3 94 50-144 6-111 (126)
21 3u5c_M 40S ribosomal protein S 99.8 3.8E-22 1.3E-26 153.3 3.9 102 51-153 23-138 (143)
22 3jyw_G 60S ribosomal protein L 99.7 7.7E-19 2.6E-23 130.1 4.2 79 64-144 21-100 (113)
23 2zkr_f 60S ribosomal protein L 99.7 3.7E-17 1.3E-21 136.3 7.8 78 65-144 132-210 (266)
24 2kg4_A Growth arrest and DNA-d 99.7 1.9E-16 6.5E-21 124.1 9.5 94 50-144 17-133 (165)
25 3izc_H 60S ribosomal protein R 99.6 2.3E-16 7.9E-21 130.8 7.4 75 69-145 132-207 (256)
26 4a17_F RPL7A, 60S ribosomal pr 99.5 1.8E-14 6.2E-19 119.4 9.0 75 68-144 124-199 (255)
27 3iz5_H 60S ribosomal protein L 99.4 2.8E-12 9.7E-17 106.2 9.8 75 68-144 127-202 (258)
28 3cg6_A Growth arrest and DNA-d 99.1 4.9E-10 1.7E-14 86.1 10.2 93 50-143 7-114 (146)
29 3ffm_A Growth arrest and DNA-d 99.0 3.9E-09 1.3E-13 82.5 11.1 95 48-143 26-135 (167)
30 1g2r_A Hypothetical cytosolic 98.4 3.5E-08 1.2E-12 71.3 0.8 29 20-48 45-73 (100)
31 3ir9_A Peptide chain release f 95.9 0.044 1.5E-06 42.1 8.8 76 49-127 29-149 (166)
32 3oby_A Protein pelota homolog; 95.0 0.07 2.4E-06 45.5 7.6 101 33-139 227-338 (352)
33 1gz0_A Hypothetical tRNA/RRNA 94.9 0.057 2E-06 43.7 6.5 72 68-141 13-86 (253)
34 2qi2_A Pelota, cell division p 94.8 0.063 2.2E-06 45.6 6.9 101 33-140 228-335 (347)
35 3nk6_A 23S rRNA methyltransfer 94.0 0.12 4E-06 42.5 6.6 70 68-141 35-105 (277)
36 3obw_A Protein pelota homolog; 94.0 0.1 3.5E-06 44.7 6.4 86 49-139 268-359 (364)
37 1x52_A Pelota homolog, CGI-17; 93.7 0.099 3.4E-06 38.3 5.1 84 51-139 23-113 (124)
38 3j15_A Protein pelota; ribosom 93.7 0.093 3.2E-06 44.6 5.5 92 33-128 241-346 (357)
39 1ipa_A RRMH, RNA 2'-O-ribose m 92.5 0.23 7.9E-06 40.6 6.1 73 66-140 26-101 (274)
40 2vgn_A DOM34; translation term 92.4 0.61 2.1E-05 39.9 8.9 102 33-139 258-372 (386)
41 2xw6_A MGS, methylglyoxal synt 91.6 0.2 6.9E-06 37.4 4.3 57 71-127 61-122 (134)
42 3mca_B Protein DOM34, elongati 91.6 0.44 1.5E-05 40.9 7.1 86 49-139 274-366 (390)
43 3agj_B Protein pelota homolog; 91.6 0.37 1.3E-05 40.8 6.4 86 49-139 255-347 (358)
44 3e20_C Eukaryotic peptide chai 90.6 0.6 2.1E-05 40.8 7.0 87 49-139 288-420 (441)
45 1b93_A Protein (methylglyoxal 90.3 0.52 1.8E-05 35.9 5.6 59 68-126 65-129 (152)
46 3agk_A Peptide chain release f 89.5 0.58 2E-05 39.5 5.9 69 51-124 284-352 (373)
47 1vmd_A MGS, methylglyoxal synt 88.9 0.63 2.2E-05 36.4 5.2 60 68-127 81-146 (178)
48 1x7o_A Avirb, rRNA methyltrans 84.8 2.6 9.1E-05 34.5 7.1 70 68-141 41-112 (287)
49 2yvq_A Carbamoyl-phosphate syn 83.6 1 3.6E-05 33.1 3.8 42 74-115 86-130 (143)
50 1dt9_A ERF1, protein (eukaryot 81.2 3.5 0.00012 35.5 6.8 45 49-95 283-327 (437)
51 3tsm_A IGPS, indole-3-glycerol 80.3 9.7 0.00033 31.1 8.8 67 74-142 133-199 (272)
52 3nkl_A UDP-D-quinovosamine 4-d 77.6 4.8 0.00016 28.0 5.5 56 67-123 48-104 (141)
53 2ohw_A YUEI protein; structura 77.1 14 0.00047 27.2 8.0 45 74-119 53-97 (133)
54 4a29_A Engineered retro-aldol 76.0 7 0.00024 32.1 6.7 83 59-143 95-184 (258)
55 1i4n_A Indole-3-glycerol phosp 67.1 28 0.00097 27.9 8.3 74 67-143 108-182 (251)
56 3qja_A IGPS, indole-3-glycerol 66.0 19 0.00065 29.1 7.2 69 70-140 122-190 (272)
57 3erw_A Sporulation thiol-disul 62.0 10 0.00035 25.3 4.2 51 80-130 63-113 (145)
58 1pii_A N-(5'phosphoribosyl)ant 61.2 26 0.00089 30.6 7.5 73 68-143 116-188 (452)
59 2rli_A SCO2 protein homolog, m 57.9 43 0.0015 23.1 7.9 48 83-130 63-113 (171)
60 3gkn_A Bacterioferritin comigr 56.7 22 0.00077 24.6 5.4 43 84-130 69-111 (163)
61 1kyq_A Met8P, siroheme biosynt 55.1 6.5 0.00022 32.1 2.5 59 84-146 106-172 (274)
62 2ggt_A SCO1 protein homolog, m 54.6 48 0.0016 22.6 8.3 47 84-130 61-110 (164)
63 2l82_A Designed protein OR32; 53.3 46 0.0016 24.5 6.6 52 74-127 16-68 (162)
64 2l5o_A Putative thioredoxin; s 50.8 52 0.0018 22.1 6.4 45 84-130 61-105 (153)
65 2wfc_A Peroxiredoxin 5, PRDX5; 50.2 35 0.0012 24.6 5.7 42 83-130 65-111 (167)
66 3drn_A Peroxiredoxin, bacterio 49.6 53 0.0018 22.8 6.5 43 84-130 63-105 (161)
67 3bzy_B ESCU; auto cleavage pro 49.0 13 0.00044 25.2 2.8 27 97-127 27-53 (83)
68 1tp9_A Peroxiredoxin, PRX D (t 48.5 68 0.0023 22.5 7.5 44 83-130 69-115 (162)
69 2ioj_A Hypothetical protein AF 47.8 39 0.0013 23.8 5.5 79 69-151 56-137 (139)
70 2i6d_A RNA methyltransferase, 47.3 6.4 0.00022 31.5 1.3 67 65-140 24-92 (257)
71 3u5r_E Uncharacterized protein 46.5 42 0.0015 25.0 5.8 47 84-130 92-142 (218)
72 3dzz_A Putative pyridoxal 5'-p 46.3 39 0.0013 26.5 5.8 43 73-115 149-198 (391)
73 3mfq_A TROA, high-affinity zin 46.2 16 0.00054 29.4 3.5 23 93-115 195-217 (282)
74 2f9s_A Thiol-disulfide oxidore 46.1 40 0.0014 22.8 5.2 44 84-130 59-102 (151)
75 3zy2_A Putative GDP-fucose pro 45.8 20 0.00068 30.8 4.1 40 84-124 279-318 (362)
76 2vt1_B Surface presentation of 44.4 16 0.00056 25.3 2.8 28 97-128 27-54 (93)
77 2iue_A Pactolus I-domain; memb 43.4 88 0.003 24.4 7.3 73 69-146 82-201 (212)
78 3fcs_B Integrin beta-3; beta p 43.1 51 0.0018 30.2 6.7 66 71-141 221-335 (690)
79 3psh_A Protein HI_1472; substr 42.7 28 0.00096 27.5 4.4 55 75-133 75-157 (326)
80 3fro_A GLGA glycogen synthase; 41.4 1.2E+02 0.0042 23.7 8.0 62 67-130 258-331 (439)
81 2a4v_A Peroxiredoxin DOT5; yea 41.3 67 0.0023 22.2 5.8 41 86-130 70-110 (159)
82 2i4r_A V-type ATP synthase sub 41.1 26 0.0009 24.4 3.5 42 81-122 50-91 (102)
83 3ecd_A Serine hydroxymethyltra 40.9 23 0.0008 28.2 3.7 46 73-119 161-208 (425)
84 2cvb_A Probable thiol-disulfid 40.4 53 0.0018 23.3 5.3 46 85-130 66-115 (188)
85 3dfz_A SIRC, precorrin-2 dehyd 40.3 17 0.00057 28.7 2.7 60 84-148 91-154 (223)
86 3gbx_A Serine hydroxymethyltra 40.0 27 0.00092 27.8 3.9 46 73-119 158-205 (420)
87 2ywi_A Hypothetical conserved 39.8 51 0.0017 23.4 5.1 47 84-130 79-129 (196)
88 2nu8_A Succinyl-COA ligase [AD 39.4 40 0.0014 27.0 4.9 41 74-114 79-119 (288)
89 2k6v_A Putative cytochrome C o 39.2 67 0.0023 22.0 5.5 46 84-129 72-120 (172)
90 2b5x_A YKUV protein, TRXY; thi 39.0 81 0.0028 20.7 6.1 46 85-130 62-109 (148)
91 3h5n_A MCCB protein; ubiquitin 38.5 29 0.001 28.8 4.0 32 84-115 208-239 (353)
92 1d2f_A MALY protein; aminotran 38.4 57 0.002 25.8 5.6 43 73-115 151-200 (390)
93 1c7n_A Cystalysin; transferase 38.3 49 0.0017 26.2 5.2 43 73-115 153-202 (399)
94 2lnd_A De novo designed protei 38.0 1E+02 0.0034 21.5 6.7 53 74-126 41-94 (112)
95 1zud_1 Adenylyltransferase THI 37.7 28 0.00096 27.3 3.6 39 74-115 110-148 (251)
96 3c01_E Surface presentation of 37.6 20 0.00067 25.1 2.4 27 97-127 27-53 (98)
97 3t7y_A YOP proteins translocat 36.7 21 0.00071 25.0 2.4 27 97-127 42-68 (97)
98 3fw2_A Thiol-disulfide oxidore 36.5 97 0.0033 20.9 7.2 44 84-130 69-115 (150)
99 2l69_A Rossmann 2X3 fold prote 36.0 1.2E+02 0.004 21.7 6.3 40 87-127 3-42 (134)
100 3ia1_A THIO-disulfide isomeras 35.8 99 0.0034 20.7 7.3 46 84-130 60-108 (154)
101 2d00_A V-type ATP synthase sub 35.3 62 0.0021 22.5 4.8 40 82-121 44-83 (109)
102 3eyt_A Uncharacterized protein 35.3 71 0.0024 21.6 5.1 48 83-130 61-116 (158)
103 2yv1_A Succinyl-COA ligase [AD 34.2 55 0.0019 26.4 4.9 39 76-114 87-125 (294)
104 2yv2_A Succinyl-COA synthetase 33.6 56 0.0019 26.4 4.9 39 76-114 88-126 (297)
105 1xzo_A BSSCO, hypothetical pro 33.5 1.2E+02 0.0039 20.9 6.3 30 84-113 69-98 (174)
106 3keo_A Redox-sensing transcrip 33.4 29 0.001 27.2 3.1 54 67-123 131-184 (212)
107 1v95_A Nuclear receptor coacti 33.2 75 0.0026 23.1 5.1 51 74-125 25-75 (130)
108 3mwd_B ATP-citrate synthase; A 32.9 48 0.0016 27.7 4.4 42 73-114 93-135 (334)
109 3kcm_A Thioredoxin family prot 32.9 1.1E+02 0.0038 20.4 6.1 45 84-130 61-105 (154)
110 3hp4_A GDSL-esterase; psychrot 32.6 77 0.0026 22.0 5.0 43 73-115 92-142 (185)
111 3uma_A Hypothetical peroxiredo 32.2 86 0.0029 23.1 5.4 45 80-130 87-136 (184)
112 1svv_A Threonine aldolase; str 31.2 61 0.0021 24.9 4.6 45 73-119 128-185 (359)
113 4e38_A Keto-hydroxyglutarate-a 31.1 59 0.002 25.8 4.5 59 73-139 96-154 (232)
114 3l8a_A METC, putative aminotra 30.9 61 0.0021 26.2 4.7 46 73-119 183-235 (421)
115 2b7k_A SCO1 protein; metalloch 30.9 1.4E+02 0.0047 21.7 6.4 48 83-130 77-127 (200)
116 1jdq_A TM006 protein, hypothet 30.2 67 0.0023 21.9 4.2 28 86-115 55-82 (98)
117 3ib7_A ICC protein; metallopho 30.0 85 0.0029 24.1 5.2 48 74-121 54-111 (330)
118 1oi7_A Succinyl-COA synthetase 29.9 71 0.0024 25.6 4.9 39 76-114 81-119 (288)
119 2vi8_A Serine hydroxymethyltra 29.7 45 0.0015 26.3 3.6 46 73-119 152-199 (405)
120 3nra_A Aspartate aminotransfer 29.5 73 0.0025 25.1 4.9 42 73-115 169-217 (407)
121 3ixr_A Bacterioferritin comigr 29.4 65 0.0022 23.1 4.2 44 83-130 84-127 (179)
122 3av3_A Phosphoribosylglycinami 29.3 84 0.0029 24.1 5.1 40 73-115 17-58 (212)
123 3isl_A Purine catabolism prote 29.0 45 0.0015 26.4 3.5 43 73-115 125-171 (416)
124 1jw9_B Molybdopterin biosynthe 28.5 43 0.0015 26.1 3.2 31 84-115 121-151 (249)
125 3b8x_A WBDK, pyridoxamine 5-ph 28.4 47 0.0016 26.4 3.6 41 74-115 119-160 (390)
126 3fsl_A Aromatic-amino-acid ami 28.3 90 0.0031 24.5 5.2 43 73-115 160-211 (397)
127 2dkj_A Serine hydroxymethyltra 28.3 48 0.0016 26.2 3.6 46 73-119 152-199 (407)
128 1ivn_A Thioesterase I; hydrola 28.0 1.3E+02 0.0044 21.1 5.6 43 73-115 88-138 (190)
129 4dq6_A Putative pyridoxal phos 27.7 78 0.0027 24.7 4.7 41 73-115 155-202 (391)
130 3nav_A Tryptophan synthase alp 27.6 2.1E+02 0.0073 22.9 7.4 85 41-127 69-170 (271)
131 3kc2_A Uncharacterized protein 27.6 55 0.0019 27.1 3.9 48 66-113 27-74 (352)
132 3g0t_A Putative aminotransfera 27.2 1.1E+02 0.0037 24.5 5.5 42 74-115 172-220 (437)
133 1jkx_A GART;, phosphoribosylgl 27.2 1.1E+02 0.0037 23.6 5.3 40 73-115 14-55 (212)
134 1ax4_A Tryptophanase; tryptoph 27.0 69 0.0024 26.0 4.4 42 74-115 170-222 (467)
135 3uhf_A Glutamate racemase; str 27.0 65 0.0022 26.0 4.2 36 77-115 79-115 (274)
136 3kgw_A Alanine-glyoxylate amin 26.7 47 0.0016 25.9 3.2 43 73-115 137-183 (393)
137 4f82_A Thioredoxin reductase; 26.6 1.6E+02 0.0056 21.9 6.2 48 76-129 74-126 (176)
138 2jli_A YSCU, YOP proteins tran 26.5 38 0.0013 24.6 2.4 26 98-127 72-97 (123)
139 3b1s_B Flagellar biosynthetic 32.4 14 0.00048 25.3 0.0 28 97-128 27-54 (87)
140 2gzm_A Glutamate racemase; enz 26.3 79 0.0027 24.8 4.5 37 76-115 57-94 (267)
141 3zrp_A Serine-pyruvate aminotr 26.1 53 0.0018 25.5 3.4 43 73-115 116-162 (384)
142 3bzs_A ESCU; auto cleavage pro 26.1 38 0.0013 25.1 2.4 26 98-127 82-107 (137)
143 1zuw_A Glutamate racemase 1; ( 26.1 73 0.0025 25.2 4.3 39 75-115 56-95 (272)
144 3lor_A Thiol-disulfide isomera 25.6 1.1E+02 0.0039 20.5 4.8 47 84-130 64-119 (160)
145 3pxv_A Nitroreductase; flavopr 25.3 1.9E+02 0.0064 20.7 7.2 98 34-132 6-159 (189)
146 2e7j_A SEP-tRNA:Cys-tRNA synth 25.1 1.2E+02 0.0042 23.3 5.4 42 74-115 133-182 (371)
147 3n0l_A Serine hydroxymethyltra 25.1 59 0.002 25.8 3.6 43 73-115 153-197 (417)
148 2jlj_A YSCU, YOP proteins tran 25.1 40 0.0014 25.1 2.4 26 98-127 81-106 (144)
149 3h7f_A Serine hydroxymethyltra 25.1 57 0.0019 26.9 3.6 45 73-118 174-220 (447)
150 3rjt_A Lipolytic protein G-D-S 25.0 40 0.0014 23.9 2.3 45 71-115 117-173 (216)
151 2yrr_A Aminotransferase, class 24.9 69 0.0024 24.4 3.8 43 73-115 113-159 (353)
152 1uf3_A Hypothetical protein TT 24.8 1E+02 0.0036 22.0 4.6 47 75-121 23-74 (228)
153 3jy6_A Transcriptional regulat 24.8 1.6E+02 0.0053 21.9 5.8 37 75-115 54-90 (276)
154 1sff_A 4-aminobutyrate aminotr 24.7 77 0.0026 25.3 4.2 50 74-124 185-246 (426)
155 3e39_A Putative nitroreductase 24.6 1.1E+02 0.0037 21.9 4.7 105 34-139 8-149 (178)
156 1a9x_A Carbamoyl phosphate syn 24.2 34 0.0012 32.6 2.2 57 71-127 996-1054(1073)
157 1jfu_A Thiol:disulfide interch 24.2 1.1E+02 0.0039 21.3 4.7 44 82-129 91-137 (186)
158 1wn2_A Peptidyl-tRNA hydrolase 24.0 1.9E+02 0.0066 20.3 6.0 70 74-151 45-115 (121)
159 2lrn_A Thiol:disulfide interch 23.9 1.7E+02 0.0057 19.6 6.9 44 84-130 62-108 (152)
160 3gi1_A LBP, laminin-binding pr 23.8 96 0.0033 24.7 4.6 49 67-115 179-233 (286)
161 3vi3_B Integrin beta-1; beta p 23.8 1.7E+02 0.0059 25.6 6.5 85 55-144 211-345 (454)
162 2oho_A Glutamate racemase; iso 23.6 95 0.0032 24.4 4.5 36 78-115 68-103 (273)
163 3ist_A Glutamate racemase; str 23.6 98 0.0033 24.7 4.6 38 76-115 59-96 (269)
164 3k6s_B Integrin beta-2; cell r 23.5 84 0.0029 28.9 4.6 65 71-140 213-324 (687)
165 1je3_A EC005, hypothetical 8.6 23.3 40 0.0014 23.1 2.0 38 76-115 44-83 (97)
166 1z7d_A Ornithine aminotransfer 23.3 1.3E+02 0.0043 24.7 5.4 50 74-124 202-259 (433)
167 1pq4_A Periplasmic binding pro 23.1 93 0.0032 24.8 4.4 24 92-115 219-242 (291)
168 3dmy_A Protein FDRA; predicted 23.0 1.1E+02 0.0036 26.9 5.0 41 74-115 51-91 (480)
169 3me7_A Putative uncharacterize 23.0 83 0.0028 22.3 3.7 30 83-113 63-92 (170)
170 1atz_A VON willebrand factor; 22.8 2.1E+02 0.007 20.3 6.4 59 84-142 108-171 (189)
171 3s81_A Putative aspartate race 22.8 1.3E+02 0.0045 23.8 5.3 37 76-115 91-127 (268)
172 1n8j_A AHPC, alkyl hydroperoxi 22.8 2.1E+02 0.0073 20.4 6.4 41 84-130 64-110 (186)
173 1s0a_A Adenosylmethionine-8-am 22.7 69 0.0024 25.8 3.6 50 74-124 192-252 (429)
174 3fkf_A Thiol-disulfide oxidore 22.7 1.7E+02 0.0057 19.1 6.9 43 85-130 68-113 (148)
175 2h01_A 2-Cys peroxiredoxin; th 22.5 1.9E+02 0.0066 20.5 5.7 41 84-130 65-114 (192)
176 4f4e_A Aromatic-amino-acid ami 22.4 1.3E+02 0.0045 24.1 5.2 43 73-115 182-233 (420)
177 2zyj_A Alpha-aminodipate amino 22.3 88 0.003 24.8 4.1 42 74-115 152-201 (397)
178 2nxf_A Putative dimetal phosph 22.3 1.3E+02 0.0046 22.6 5.0 47 76-122 43-99 (322)
179 1ytl_A Acetyl-COA decarboxylas 22.2 92 0.0031 23.4 4.0 47 66-115 18-66 (174)
180 3piu_A 1-aminocyclopropane-1-c 22.1 1.3E+02 0.0043 24.3 5.0 42 74-115 176-229 (435)
181 3t3p_B Integrin beta-3; integr 22.1 2.2E+02 0.0075 25.0 6.9 84 54-142 201-336 (472)
182 1knx_A Probable HPR(Ser) kinas 22.1 78 0.0027 26.2 3.8 42 76-119 75-116 (312)
183 2kvu_A MKL/myocardin-like prot 21.9 63 0.0022 21.7 2.6 35 90-127 22-56 (75)
184 3jtx_A Aminotransferase; NP_28 21.8 61 0.0021 25.5 3.0 40 75-115 160-206 (396)
185 3eag_A UDP-N-acetylmuramate:L- 21.8 1.4E+02 0.0046 23.9 5.2 50 84-140 66-115 (326)
186 3b0z_B Flagellar biosynthetic 27.3 19 0.00066 25.9 0.0 27 97-127 27-53 (114)
187 3f7j_A YVGN protein; aldo-keto 21.6 1.6E+02 0.0055 23.0 5.5 64 53-116 119-189 (276)
188 3lvj_C Sulfurtransferase TUSA; 21.6 1.3E+02 0.0045 19.4 4.2 35 78-115 32-66 (82)
189 1ynp_A Oxidoreductase, AKR11C1 21.6 3.1E+02 0.011 21.8 7.7 63 54-116 148-216 (317)
190 2bmx_A Alkyl hydroperoxidase C 21.6 2.2E+02 0.0077 20.2 6.1 41 84-130 79-125 (195)
191 3kax_A Aminotransferase, class 21.6 1.2E+02 0.004 23.6 4.6 42 73-115 146-194 (383)
192 2pr7_A Haloacid dehalogenase/e 21.6 1.5E+02 0.005 19.1 4.6 13 100-112 78-90 (137)
193 3a2b_A Serine palmitoyltransfe 21.5 1.3E+02 0.0044 23.7 4.9 42 74-115 160-208 (398)
194 2jfq_A Glutamate racemase; cel 21.5 1E+02 0.0035 24.6 4.3 38 75-115 75-113 (286)
195 1vc4_A Indole-3-glycerol phosp 21.5 1.2E+02 0.0042 23.8 4.7 69 71-142 116-184 (254)
196 1p9l_A Dihydrodipicolinate red 21.4 1.8E+02 0.006 22.9 5.7 28 85-114 46-73 (245)
197 3hcz_A Possible thiol-disulfid 21.4 1.8E+02 0.0061 19.0 5.8 42 84-130 64-110 (148)
198 2l2q_A PTS system, cellobiose- 21.3 1.4E+02 0.0047 20.2 4.4 48 72-124 41-88 (109)
199 3by5_A Cobalamin biosynthesis 21.1 1.1E+02 0.0036 22.9 4.1 27 98-126 52-78 (155)
200 1nm3_A Protein HI0572; hybrid, 21.1 2.5E+02 0.0084 20.8 6.3 42 83-130 67-112 (241)
201 2yvt_A Hypothetical protein AQ 21.0 1.5E+02 0.0053 21.8 5.1 24 74-97 22-45 (260)
202 3qel_B Glutamate [NMDA] recept 21.0 1.2E+02 0.004 24.5 4.6 45 73-117 52-97 (364)
203 3f9t_A TDC, L-tyrosine decarbo 20.9 1.2E+02 0.004 23.4 4.5 45 73-118 160-208 (397)
204 2oqx_A Tryptophanase; lyase, p 20.7 1E+02 0.0036 24.9 4.3 42 74-115 170-222 (467)
205 3dxv_A Alpha-amino-epsilon-cap 20.7 1.5E+02 0.0052 23.8 5.3 44 74-118 188-242 (439)
206 2c0d_A Thioredoxin peroxidase 20.6 2.3E+02 0.0078 21.3 6.0 40 84-129 90-138 (221)
207 1y8q_A Ubiquitin-like 1 activa 20.6 71 0.0024 26.3 3.3 34 84-119 125-158 (346)
208 1tt5_A APPBP1, amyloid protein 20.5 82 0.0028 27.7 3.8 34 84-119 124-157 (531)
209 3gl3_A Putative thiol:disulfid 20.4 1.9E+02 0.0067 19.1 6.8 43 85-130 62-104 (152)
210 2vvt_A Glutamate racemase; iso 20.3 1.4E+02 0.0048 23.8 4.9 38 76-115 78-115 (290)
211 3hl2_A O-phosphoseryl-tRNA(SEC 20.3 97 0.0033 27.6 4.2 109 6-115 121-251 (501)
212 1toa_A Tromp-1, protein (perip 20.3 1.2E+02 0.0041 24.6 4.6 24 92-115 228-251 (313)
213 2i81_A 2-Cys peroxiredoxin; st 20.0 2.1E+02 0.0072 21.1 5.6 42 83-130 85-135 (213)
No 1
>3iz5_f 60S ribosomal protein L30 (L30E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_f
Probab=99.97 E-value=3.1e-32 Score=201.47 Aligned_cols=109 Identities=75% Similarity=1.185 Sum_probs=102.7
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHhCCceecHHHHHHHHhcCCceEEEEeCCCChhhhhhHHHHHHhCCCcEEEec-CCHHH
Q 047379 44 VTSKKTKKTHESINNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYN-GNNVD 122 (154)
Q Consensus 44 ~~~~k~~~~~~kil~lLglA~rAGklv~G~~~VlkaIk~gkakLVIlA~Das~~~k~ki~~~c~~~~Vpvi~~~-~tkeE 122 (154)
+..+|+++..++|+++||+|+|+|+++.|+++|+++|++|+++|||||+|+||+++++|+++|+.++|||+. + +|++|
T Consensus 2 ~~~~~~~~~~~~i~~~L~la~kagk~~~G~~~t~kai~~gkakLVilA~D~~~~~~~~i~~~c~~~~ipv~~-~~~s~~e 80 (112)
T 3iz5_f 2 APTKKAKKSGENINNKLQLVMKSGKYTLGYKTVLKTLRSSLGKLIILANNCPPLRKSEIETYAMLAKISVHH-FHGNNVD 80 (112)
T ss_dssp BTTBSCCCGGGHHHHHHHHHHTTCEEEESHHHHHHHHHTTCCSEEEECSCCCHHHHHHHHHHHHHTTCCEEC-CCCTTCT
T ss_pred CccccccccHHHHHHHHHHHHHhCCeeECHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHcCCcEEE-eCCCHHH
Confidence 445666778899999999999999999999999999999999999999999999999999999999999995 6 99999
Q ss_pred HHhhhCCcccEEEEEEeCcCchHHHhcCCCC
Q 047379 123 LGTACGKYFRVSCLSIIDPGDSDIIKSLPGD 153 (154)
Q Consensus 123 LG~a~Gk~~~vsvvaI~D~GfA~~i~~~~~~ 153 (154)
||.+||+++++++++|+|+||+++|.++.+.
T Consensus 81 LG~A~Gk~~~v~~vaI~D~G~a~~l~~~~~~ 111 (112)
T 3iz5_f 81 LGTACGKYYRVCCLSILDPGDSDIISTTTTT 111 (112)
T ss_dssp HHHHHCTTCSSCEEEEECCSCCSHHHHTTSC
T ss_pred HHHHhCCccceEEEEEeccchHHHHHhcccc
Confidence 9999999999888999999999999998865
No 2
>3u5e_c L32, RP73, YL38, 60S ribosomal protein L30; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_f 3izs_f 3o58_Z 3o5h_Z 1t0k_B 3u5i_c 4b6a_c 1ck2_A 1cn7_A 1nmu_B* 3jyw_2
Probab=99.97 E-value=2.1e-31 Score=194.06 Aligned_cols=100 Identities=61% Similarity=0.966 Sum_probs=93.3
Q ss_pred hHHHHHHHHHHHHHHhCCceecHHHHHHHHhcCCceEEEEeCCCChhhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCc
Q 047379 51 KTHESINNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKY 130 (154)
Q Consensus 51 ~~~~kil~lLglA~rAGklv~G~~~VlkaIk~gkakLVIlA~Das~~~k~ki~~~c~~~~Vpvi~~~~tkeELG~a~Gk~ 130 (154)
++.++++++||+|+|+|+++.|+++|+++|++|+++|||+|+|++|+++++++++|+.++|||+.|++|++|||.+||++
T Consensus 5 k~~~~i~~~L~la~kagk~v~G~~~v~kai~~gkaklVilA~D~~~~~~~~i~~~c~~~~ip~~~~~~s~~eLG~A~Gk~ 84 (105)
T 3u5e_c 5 KSQESINQKLALVIKSGKYTLGYKSTVKSLRQGKSKLIIIAANTPVLRKSELEYYAMLSKTKVYYFQGGNNELGTAVGKL 84 (105)
T ss_dssp ----CHHHHHHHHHTTSEEEESHHHHHHHHHTTCCSEEEECTTSCHHHHHHHHHHHHHHTCEEEECSSCHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHHHhCCeeECHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEeCCCHHHHHHHhCCc
Confidence 47899999999999999999999999999999999999999999999999999999999999996689999999999999
Q ss_pred ccEEEEEEeCcCchHHHhcC
Q 047379 131 FRVSCLSIIDPGDSDIIKSL 150 (154)
Q Consensus 131 ~~vsvvaI~D~GfA~~i~~~ 150 (154)
+++++++|+|+||+++|.++
T Consensus 85 ~~~~~vaI~D~G~a~~l~~~ 104 (105)
T 3u5e_c 85 FRVGVVSILEAGDSDILTTL 104 (105)
T ss_dssp SCCSEEEEEECCSCCTTTTT
T ss_pred ccEEEEEEeccchHHHHHhc
Confidence 99888999999999999876
No 3
>4a18_G RPL30; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_G 4a1b_G 4a1d_G 4adx_6
Probab=99.97 E-value=5.4e-31 Score=191.45 Aligned_cols=100 Identities=58% Similarity=1.048 Sum_probs=92.8
Q ss_pred hhHHHHHHHHHHHHHHhCCceecHHHHHHHHhcCCceEEEEeCCCChhhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCC
Q 047379 50 KKTHESINNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGK 129 (154)
Q Consensus 50 ~~~~~kil~lLglA~rAGklv~G~~~VlkaIk~gkakLVIlA~Das~~~k~ki~~~c~~~~Vpvi~~~~tkeELG~a~Gk 129 (154)
++..++++++||+|+|+|+++.|+++|+++|++|+++|||+|+|++|++++++..+|+.++|||+.|++|++|||.|||+
T Consensus 4 ~k~~~~i~~~L~la~kagklv~G~~~v~kai~~gkaklViiA~D~~~~~~~~i~~~c~~~~ip~~~~~~s~~eLG~a~Gk 83 (104)
T 4a18_G 4 KVTQDNIQSKLALVMRSGKATLGYKSTIKAIRNGTAKLVFISNNCPTVRKSEIEYYASLAQISIHHFVGSNVELGTACGK 83 (104)
T ss_dssp ----CHHHHHHHHHHHHSEEEESHHHHHHHHHHTCCCEEEECTTSCHHHHHHHHHHHHHHTCEEEECSSCHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHhCCEeECHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHcCCcEEEecCCHHHHHHHhCC
Confidence 45789999999999999999999999999999999999999999999999999999999999999668999999999999
Q ss_pred cccEEEEEEeCcCchHHHhc
Q 047379 130 YFRVSCLSIIDPGDSDIIKS 149 (154)
Q Consensus 130 ~~~vsvvaI~D~GfA~~i~~ 149 (154)
++++++++|+|+||+++|.+
T Consensus 84 ~~~~~~vaI~D~G~a~~l~~ 103 (104)
T 4a18_G 84 YHRCSTMAILDAGDSDILKT 103 (104)
T ss_dssp SSCCSEEEEEECSSCGGGCC
T ss_pred ccCEEEEEEeccchHHHhhc
Confidence 99988899999999998864
No 4
>3on1_A BH2414 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; HET: MSE; 1.65A {Bacillus halodurans}
Probab=99.96 E-value=1.5e-30 Score=187.92 Aligned_cols=99 Identities=23% Similarity=0.270 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHHhCCceecHHHHHHHHhcCCceEEEEeCCCChhhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCccc
Q 047379 53 HESINNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFR 132 (154)
Q Consensus 53 ~~kil~lLglA~rAGklv~G~~~VlkaIk~gkakLVIlA~Das~~~k~ki~~~c~~~~Vpvi~~~~tkeELG~a~Gk~~~ 132 (154)
.++++++||+|+|+|+++.|+++|+++|++|+++|||+|+|+||++++++.++|+.++|||+ +++|++|||.+||++.+
T Consensus 3 ~~ki~~~L~la~kagk~v~G~~~v~kai~~gka~lViiA~D~~~~~~~~i~~~c~~~~ip~~-~~~s~~eLG~a~Gk~~~ 81 (101)
T 3on1_A 3 EAKWLSLLGLAARARQLLTGEEQVVKAVQNGQVTLVILSSDAGIHTKKKLLDKCGSYQIPVK-VVGNRQMLGRAIGKHER 81 (101)
T ss_dssp CCHHHHHHHHHHHTTCEEESHHHHHHHHHTTCCSEEEEETTSCHHHHHHHHHHHHHHTCCEE-EESCHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHHHHCCEeECHHHHHHHHHcCCCcEEEEeCCCCHHHHHHHHHHHHHcCCCEE-EeCCHHHHHHHhCCcCe
Confidence 36899999999999999999999999999999999999999999999999999999999999 59999999999999977
Q ss_pred EEEEEEeCcCchHHHhcCCCC
Q 047379 133 VSCLSIIDPGDSDIIKSLPGD 153 (154)
Q Consensus 133 vsvvaI~D~GfA~~i~~~~~~ 153 (154)
+ ++||+|+||++.|.++++|
T Consensus 82 ~-~vai~d~g~a~~i~~~~~~ 101 (101)
T 3on1_A 82 V-VIGVKDAGFSRKLAALIDE 101 (101)
T ss_dssp S-EEEECCHHHHHHHHHHHHC
T ss_pred E-EEEEECccHHHHHHHHhcC
Confidence 6 7999999999999887654
No 5
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis}
Probab=99.96 E-value=2.7e-30 Score=186.90 Aligned_cols=97 Identities=22% Similarity=0.273 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHHhCCceecHHHHHHHHhcCCceEEEEeCCCChhhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCccc
Q 047379 53 HESINNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFR 132 (154)
Q Consensus 53 ~~kil~lLglA~rAGklv~G~~~VlkaIk~gkakLVIlA~Das~~~k~ki~~~c~~~~Vpvi~~~~tkeELG~a~Gk~~~ 132 (154)
.++++++||+|+|||+++.|+++|+++|++|+++|||+|+|+||++++++.++|+.++|||+. ++|++|||.+||++++
T Consensus 4 ~~ki~~~L~la~kagk~v~G~~~v~kai~~gka~lViiA~D~~~~~~~~i~~~c~~~~vp~~~-~~s~~eLG~A~Gk~~~ 82 (101)
T 3v7q_A 4 GMEWFPLLGLANRARKVVSGEDLVIKEIRNARAKLVLLTEDASSNTAKKVTDKCNYYKVPYKK-VESRAVLGRSIGKEAR 82 (101)
T ss_dssp CCTHHHHHHHHHHTTCEEESHHHHHHHHHTTCCSEEEEETTSCHHHHHHHHHHHHHTTCCEEE-ESCHHHHHHHTTSSCC
T ss_pred cchhHHHhhhhhhhhhcccchhhhHHHHhcCceeEEEEeccccccchhhhcccccccCCCeee-echHHHHHhhhCccce
Confidence 367999999999999999999999999999999999999999999999999999999999995 7999999999999988
Q ss_pred EEEEEEeCcCchHHHhcCC
Q 047379 133 VSCLSIIDPGDSDIIKSLP 151 (154)
Q Consensus 133 vsvvaI~D~GfA~~i~~~~ 151 (154)
+ ++||+|+||++.|.+++
T Consensus 83 ~-~~ai~D~g~a~~i~~~~ 100 (101)
T 3v7q_A 83 V-VVAVTDQGFANKLISLL 100 (101)
T ss_dssp S-EEEECCHHHHHHHHHHC
T ss_pred E-EEEEeccHHHHHHHHhc
Confidence 7 69999999999998765
No 6
>3vi6_A 60S ribosomal protein L30; three-layer alpha/beta/ALPA; 1.59A {Homo sapiens} PDB: 2zkr_6 1ysh_C
Probab=99.96 E-value=2.7e-30 Score=194.18 Aligned_cols=111 Identities=73% Similarity=1.197 Sum_probs=93.4
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHhCCceecHHHHHHHHhcCCceEEEEeCCCChhhhhhHHHHHHhCCCcEEEecCCHHH
Q 047379 43 MVTSKKTKKTHESINNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVD 122 (154)
Q Consensus 43 ~~~~~k~~~~~~kil~lLglA~rAGklv~G~~~VlkaIk~gkakLVIlA~Das~~~k~ki~~~c~~~~Vpvi~~~~tkeE 122 (154)
|+..+|+++..++++++|++|+|+|++++|+++|+++|++|+++|||+|+|+||+++++++++|...++|+..|++|++|
T Consensus 2 ~~~~~~~~~~~~~i~~~L~lA~kaGklv~G~~~v~kaIr~gkakLVIiA~Das~~~~~ki~~~~~~~~~~V~~~~~sk~e 81 (125)
T 3vi6_A 2 MVAAKKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEIEYYAMLAKTGVHHYSGNNIE 81 (125)
T ss_dssp --------CCSSCSHHHHHHHHHHSEEEESHHHHHHHHHTTCCSEEEECTTSCHHHHHHHHHHHHHTTCEEEECSSCHHH
T ss_pred CcccccchhhHHHHHHHHHHHHHhCCeeeCHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHhCCCcEEEcCCHHH
Confidence 34456667778999999999999999999999999999999999999999999999999999999999887657999999
Q ss_pred HHhhhCCcccEEEEEEeCcCchHHHhcCCCC
Q 047379 123 LGTACGKYFRVSCLSIIDPGDSDIIKSLPGD 153 (154)
Q Consensus 123 LG~a~Gk~~~vsvvaI~D~GfA~~i~~~~~~ 153 (154)
||.|||+++++++++|+|+||++.|.+++++
T Consensus 82 LG~A~Gk~~~v~~vaI~D~G~a~~l~~~~~~ 112 (125)
T 3vi6_A 82 LGTACGKYYRVCTLAIIDPGDSDIIRSMPEQ 112 (125)
T ss_dssp HHHHTTCSSCCCEEEEEECTTCCCC------
T ss_pred HHHHhCCcccEEEEEEeCchhHHHHHHHHHh
Confidence 9999999999878999999999999988764
No 7
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.96 E-value=2e-29 Score=181.34 Aligned_cols=95 Identities=39% Similarity=0.639 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHhCCceecHHHHHHHHhcCCceEEEEeCCCChhhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCcccEE
Q 047379 55 SINNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVS 134 (154)
Q Consensus 55 kil~lLglA~rAGklv~G~~~VlkaIk~gkakLVIlA~Das~~~k~ki~~~c~~~~Vpvi~~~~tkeELG~a~Gk~~~vs 134 (154)
+|.++|++|+|+|+++.|.++|+++|++|+++|||+|+|+|++++++++++|+.++||++.|++|++|||.+||++++++
T Consensus 2 di~~~L~la~kagk~v~G~~~v~kai~~gka~lViiA~D~~~~~~~~i~~~c~~~~ip~~~~~~s~~eLG~a~Gk~~~~~ 81 (99)
T 3j21_Z 2 DLAFELRKAMETGKVVLGSNETIRLAKTGGAKLIIVAKNAPKEIKDDIYYYAKLSDIPVYEFEGTSVELGTLLGKPFVVA 81 (99)
T ss_dssp HHHHHHHHHHHSSCEEESHHHHHHHHHHTCCSEEEEECCCCHHHHHHHHHHHHHTTCCEEEECCCSCGGGGTTCSTTCSE
T ss_pred CHHHHHHHHHHhCCEeECHHHHHHHHHcCCccEEEEeCCCCHHHHHHHHHHHHHcCCCEEEeCCCHHHHHHHHCCCCCEE
Confidence 68999999999999999999999999999999999999999999999999999999998766699999999999999887
Q ss_pred EEEEeCcCchHHHhc
Q 047379 135 CLSIIDPGDSDIIKS 149 (154)
Q Consensus 135 vvaI~D~GfA~~i~~ 149 (154)
+++|+|+||+++|..
T Consensus 82 ~vaI~d~g~a~~l~~ 96 (99)
T 3j21_Z 82 SLAIVDPGESKILAI 96 (99)
T ss_dssp EEEESSCSSCSHHHH
T ss_pred EEEEEccchHHHHHh
Confidence 999999999999864
No 8
>1w41_A 50S ribosomal protein L30E; electrostatic interactions, thermostability, protein engineering; 1.7A {Thermococcus celer} SCOP: d.79.3.1 PDB: 3n4y_A 3lfo_A 1w40_A 1go0_A 1go1_A 1h7m_A 1w42_A 1w3e_X 3ra6_A 3ra5_A 3n4z_A 2bo1_A
Probab=99.95 E-value=8.1e-29 Score=178.61 Aligned_cols=99 Identities=34% Similarity=0.563 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHhCCceecHHHHHHHHhcCCceEEEEeCCCChhhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCcccE
Q 047379 54 ESINNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRV 133 (154)
Q Consensus 54 ~kil~lLglA~rAGklv~G~~~VlkaIk~gkakLVIlA~Das~~~k~ki~~~c~~~~Vpvi~~~~tkeELG~a~Gk~~~v 133 (154)
++++++|++|+|+|+++.|.++|+++|++|+++|||+|+|+|++++++++.+|+.++||++.|++|++|||.+||+++++
T Consensus 2 ~~i~~~L~la~kagkl~~G~~~v~kai~~gka~lViiA~D~~~~~~~~l~~~c~~~~vp~~~~~~s~~eLG~a~G~~~~~ 81 (101)
T 1w41_A 2 VDFAFELRKAQDTGKIVMGARKSIQYAKMGGAKLIIVARNARPDIKEDIEYYARLSGIPVYEFEGTSVELGTLLGRPHTV 81 (101)
T ss_dssp CCHHHHHHHHHHHSEEEESHHHHHHHHHHTCCSEEEEETTSCHHHHHHHHHHHHHHTCCEEEESSCHHHHHHHTTCSSCC
T ss_pred chHHHHHHHHHHcCCEeECHHHHHHHHHcCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEecCCHHHHHHHhCCCCcE
Confidence 47899999999999999999999999999999999999999999999999999999999886569999999999999887
Q ss_pred EEEEEeCcCchHHHhcCCCC
Q 047379 134 SCLSIIDPGDSDIIKSLPGD 153 (154)
Q Consensus 134 svvaI~D~GfA~~i~~~~~~ 153 (154)
++++|+|+||++ |.+++++
T Consensus 82 ~~vai~d~g~a~-i~~~~~~ 100 (101)
T 1w41_A 82 SALAVVDPGASR-ILALGGK 100 (101)
T ss_dssp CEEEEEECTTCC-GGGGGC-
T ss_pred EEEEEecCCHHH-HHHHhhc
Confidence 789999999999 7776654
No 9
>3cpq_A 50S ribosomal protein L30E; RNA-protein, elongation factor, ribonucleoprotein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii}
Probab=99.95 E-value=6e-29 Score=182.24 Aligned_cols=101 Identities=30% Similarity=0.573 Sum_probs=91.5
Q ss_pred hhHHHHHHHHHHHHHHhCCceecHHHHHHHHhcCCceEEEEeCCCChhhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCC
Q 047379 50 KKTHESINNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGK 129 (154)
Q Consensus 50 ~~~~~kil~lLglA~rAGklv~G~~~VlkaIk~gkakLVIlA~Das~~~k~ki~~~c~~~~Vpvi~~~~tkeELG~a~Gk 129 (154)
+++.++++++|++|+|+|+++.|.++|+++|++|+++|||+|+|+|++++++|+.+|+.++||++.|.+|++|||.+||+
T Consensus 3 ~k~~~~i~~~L~la~kagkl~~G~~~v~kai~~gka~lViiA~D~~~~~~~~l~~~c~~~~Vp~~~~~~sk~eLG~a~G~ 82 (110)
T 3cpq_A 3 RRENMDVNKAIRTAVDTGKVILGSKRTIKFVKHGEGKLVVLAGNIPKDLEEDVKYYAKLSNIPVYQHKITSLELGAVCGK 82 (110)
T ss_dssp ----CHHHHHHHHHHHHSEEEESHHHHHHHHHTTCCSEEEECTTCBHHHHHHHHHHHHHTTCCEEECCSCHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHcCCeeeCHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEcCCHHHHHHHhCC
Confidence 34678999999999999999999999999999999999999999999999999999999999988644999999999999
Q ss_pred cccEEEEEEeCcCchHHHhcCC
Q 047379 130 YFRVSCLSIIDPGDSDIIKSLP 151 (154)
Q Consensus 130 ~~~vsvvaI~D~GfA~~i~~~~ 151 (154)
++++++++|+|+||++ |.+++
T Consensus 83 ~~~~s~vaI~d~g~a~-i~~~~ 103 (110)
T 3cpq_A 83 PFPVAALLVLDEGLSN-IMELV 103 (110)
T ss_dssp SSCCSEEEEEECTTCC-HHHHH
T ss_pred ccceEEEEEecCCHHH-HHHHh
Confidence 9887789999999999 66544
No 10
>1vq8_F 50S ribosomal protein L7AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.79.3.1 PDB: 1vq4_F* 1vq5_F* 1vq6_F* 1vq7_F* 1s72_F* 1vq9_F* 1vqk_F* 1vql_F* 1vqm_F* 1vqn_F* 1vqo_F* 1vqp_F* 1yhq_F* 1yi2_F* 1yij_F* 1yit_F* 1yj9_F* 1yjn_F* 1yjw_F* 2otj_F* ...
Probab=99.94 E-value=4.8e-27 Score=174.30 Aligned_cols=101 Identities=17% Similarity=0.205 Sum_probs=94.1
Q ss_pred hhHHHHHHHHHHHHHHhCCceecHHHHHHHHhcCCceEEEEeCCCChh-hhhhHHHHHHhCCCcEEEecCCHHHHHhhhC
Q 047379 50 KKTHESINNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPL-RKSEIEYYAMLAKVGVHHYNGNNVDLGTACG 128 (154)
Q Consensus 50 ~~~~~kil~lLglA~rAGklv~G~~~VlkaIk~gkakLVIlA~Das~~-~k~ki~~~c~~~~Vpvi~~~~tkeELG~a~G 128 (154)
..+.++++++|++|+++|+++.|.++|+++|++|+++|||+|+|++|+ .++++..+|+.++|||+ |++|++|||.+||
T Consensus 11 ~~l~~~i~~~L~~A~kag~l~~G~~~v~kal~~gka~lViiA~D~~~~~~~~~l~~lc~~~~Vp~~-~~~sk~eLG~a~G 89 (120)
T 1vq8_F 11 ADLEDDALEALEVARDTGAVKKGTNETTKSIERGSAELVFVAEDVQPEEIVMHIPELADEKGVPFI-FVEQQDDLGHAAG 89 (120)
T ss_dssp HHHHHHHHHHHHHHHHSSCEEESHHHHHHHHHHTCCSEEEEESCCSSGGGTTTHHHHHHTTCCCEE-EESCHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCCEeECHHHHHHHHHcCCceEEEEeCCCChHHHHHHHHHHHHhcCCCEE-EECCHHHHHHHhC
Confidence 358899999999999999999999999999999999999999999997 59999999999999998 6999999999999
Q ss_pred CcccEEEEEEeCcCchHHHhcCC
Q 047379 129 KYFRVSCLSIIDPGDSDIIKSLP 151 (154)
Q Consensus 129 k~~~vsvvaI~D~GfA~~i~~~~ 151 (154)
+++++++++|+|.||++.+.+.+
T Consensus 90 ~~~~~~~vaI~d~g~a~~~~~~l 112 (120)
T 1vq8_F 90 LEVGSAAAAVTDAGEADADVEDI 112 (120)
T ss_dssp CSSCCSEEEESSCSSCHHHHHHH
T ss_pred CCCCeEEEEEecCchHHHHHHHH
Confidence 99777789999999998877643
No 11
>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} PDB: 2lbx_A
Probab=99.94 E-value=1.2e-26 Score=172.77 Aligned_cols=97 Identities=20% Similarity=0.201 Sum_probs=91.7
Q ss_pred hhHHHHHHHHHHHHHHhCCceecHHHHHHHHhcCCceEEEEeCCCChh-hhhhHHHHHHhCCCcEEEecCCHHHHHhhhC
Q 047379 50 KKTHESINNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPL-RKSEIEYYAMLAKVGVHHYNGNNVDLGTACG 128 (154)
Q Consensus 50 ~~~~~kil~lLglA~rAGklv~G~~~VlkaIk~gkakLVIlA~Das~~-~k~ki~~~c~~~~Vpvi~~~~tkeELG~a~G 128 (154)
.++.++++++|++|+++|+++.|.++|+++|++|+++|||||+|++|+ ++++++.+|+.++||++ +++|+++||++||
T Consensus 2 ~~l~~ki~~~L~~a~k~gkl~~G~~~v~kai~~gkakLViiA~D~~~~~~~~~l~~lc~~~~VP~~-~v~sk~eLG~a~g 80 (121)
T 2lbw_A 2 KKLNKKVLKTVKKASKAKNVKRGVKEVVKALRKGEKGLVVIAGDIWPADVISHIPVLCEDHSVPYI-FIPSKQDLGAAGA 80 (121)
T ss_dssp HHHHHHHHHHHHHHHTTTCEEESHHHHHHHHHHSCCCEEEECTTCSCTTHHHHHHHHHHHTCCCEE-ECCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHhcCCcEE-EECCHHHHHHHhC
Confidence 358899999999999999999999999999999999999999999996 69999999999999999 5999999999999
Q ss_pred CcccEEEEEEeCcCchHHH
Q 047379 129 KYFRVSCLSIIDPGDSDII 147 (154)
Q Consensus 129 k~~~vsvvaI~D~GfA~~i 147 (154)
+.+++++++|+|+||++.+
T Consensus 81 ~k~~~s~v~I~d~g~a~~~ 99 (121)
T 2lbw_A 81 TKRPTSVVFIVPGSNKKKD 99 (121)
T ss_dssp CSSCCSEEEECCSCTTGGG
T ss_pred CCCCEEEEEEEcCcchHHH
Confidence 8777779999999999887
No 12
>2fc3_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich, ribosome, RNA binding protein; 1.56A {Aeropyrum pernix} SCOP: d.79.3.1 PDB: 3pla_C* 3id5_C* 3hax_D* 2hvy_D* 3hay_D* 3nvi_B 3nmu_C 3nvk_E* 3lwr_C 3lwo_C* 3lwq_C* 3lwp_C 3lwv_C 3hjw_C* 2czw_A 1pxw_A
Probab=99.94 E-value=6.7e-27 Score=174.55 Aligned_cols=101 Identities=17% Similarity=0.285 Sum_probs=94.1
Q ss_pred hhHHHHHHHHHHHHHHhCCceecHHHHHHHHhcCCceEEEEeCCCChh-hhhhHHHHHHhCCCcEEEecCCHHHHHhhhC
Q 047379 50 KKTHESINNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPL-RKSEIEYYAMLAKVGVHHYNGNNVDLGTACG 128 (154)
Q Consensus 50 ~~~~~kil~lLglA~rAGklv~G~~~VlkaIk~gkakLVIlA~Das~~-~k~ki~~~c~~~~Vpvi~~~~tkeELG~a~G 128 (154)
..+.++++++|++|+|+|+++.|.++|+++|++|+++|||+|+|++|+ .++++..+|+.++|||+ |++|++|||.+||
T Consensus 10 ~~l~~~i~~~L~lA~kagkl~~G~~~v~kal~~gka~lViiA~D~~~~~~~~~l~~lc~~~~Vp~~-~v~sk~eLG~a~G 88 (124)
T 2fc3_A 10 EDLAEKAYEAVKRARETGRIKKGTNETTKAVERGLAKLVVIAEDVDPPEIVMHLPLLCDEKKIPYV-YVPSKKRLGEAAG 88 (124)
T ss_dssp HHHHHHHHHHHHHHHHHSEEEESHHHHHHHHHTTCCSEEEEETTCSSGGGTTTHHHHHHHTTCCEE-EESCHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhCCccCCHHHHHHHHHcCCceEEEEcCCCChHHHHHHHHHHHHHcCCCEE-EECCHHHHHHHhC
Confidence 358899999999999999999999999999999999999999999997 59999999999999999 6999999999999
Q ss_pred CcccEEEEEEeCcCchHHHhcCC
Q 047379 129 KYFRVSCLSIIDPGDSDIIKSLP 151 (154)
Q Consensus 129 k~~~vsvvaI~D~GfA~~i~~~~ 151 (154)
+++++++++|+|.||++.+.+.+
T Consensus 89 ~~~~~~~vaI~d~g~a~~~~~~l 111 (124)
T 2fc3_A 89 IEVAAASVAIIEPGDAETLVREI 111 (124)
T ss_dssp CSSCCSEEEEEECGGGHHHHHHH
T ss_pred CCCCEEEEEEECcchHHHHHHHH
Confidence 99766789999999999877643
No 13
>1rlg_A 50S ribosomal protein L7AE; protein-RNA, structural protein/RNA complex; HET: 5BU; 2.70A {Archaeoglobus fulgidus} SCOP: d.79.3.1
Probab=99.94 E-value=4.9e-27 Score=174.01 Aligned_cols=101 Identities=19% Similarity=0.218 Sum_probs=94.0
Q ss_pred hhHHHHHHHHHHHHHHhCCceecHHHHHHHHhcCCceEEEEeCCCChh-hhhhHHHHHHhCCCcEEEecCCHHHHHhhhC
Q 047379 50 KKTHESINNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPL-RKSEIEYYAMLAKVGVHHYNGNNVDLGTACG 128 (154)
Q Consensus 50 ~~~~~kil~lLglA~rAGklv~G~~~VlkaIk~gkakLVIlA~Das~~-~k~ki~~~c~~~~Vpvi~~~~tkeELG~a~G 128 (154)
..+.++++++|++|+|+|+++.|.++|+++|++|+++|||+|+|++|+ .++++..+|+.++||++ |++|++|||.+||
T Consensus 9 ~~l~~~i~~~L~lA~kag~l~~G~~~v~kal~~gka~lViiA~D~~~~~~~~~l~~lc~~~~Vp~~-~~~sk~eLG~a~G 87 (119)
T 1rlg_A 9 EDMQNEALSLLEKVRESGKVKKGTNETTKAVERGLAKLVYIAEDVDPPEIVAHLPLLCEEKNVPYI-YVKSKNDLGRAVG 87 (119)
T ss_dssp SHHHHHHHHHHHHHHHHSEEEESHHHHHHHHTTTCCSEEEEESCCSCSTTTTHHHHHHHHHTCCEE-EESCHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhCCeeECHHHHHHHHHcCCCcEEEEeCCCChHHHHHHHHHHHHHcCCCEE-EeCCHHHHHHHhC
Confidence 358899999999999999999999999999999999999999999997 59999999999999999 6999999999999
Q ss_pred CcccEEEEEEeCcCchHHHhcCC
Q 047379 129 KYFRVSCLSIIDPGDSDIIKSLP 151 (154)
Q Consensus 129 k~~~vsvvaI~D~GfA~~i~~~~ 151 (154)
+++++++++|+|.|+++.+.+.+
T Consensus 88 ~~~~~~~vaI~d~g~a~~~~~~l 110 (119)
T 1rlg_A 88 IEVPCASAAIINEGELRKELGSL 110 (119)
T ss_dssp CSSCCSEEEEEECGGGHHHHHHH
T ss_pred CCCCeEEEEEecCchHHHHHHHH
Confidence 99777789999999999877643
No 14
>3o85_A Ribosomal protein L7AE; alpha beta sandwich fold, K-turn RNA binding protein, KINK T ribosomal protein; 1.81A {Giardia lamblia}
Probab=99.93 E-value=7.8e-26 Score=169.01 Aligned_cols=95 Identities=16% Similarity=0.174 Sum_probs=90.1
Q ss_pred hhhHHHHHHHHHHHHHHhCCceecHHHHHHHHhcCCceEEEEeCCCChhh-hhhHHHHHHhCCCcEEEecCCHHHHHhhh
Q 047379 49 TKKTHESINNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLR-KSEIEYYAMLAKVGVHHYNGNNVDLGTAC 127 (154)
Q Consensus 49 ~~~~~~kil~lLglA~rAGklv~G~~~VlkaIk~gkakLVIlA~Das~~~-k~ki~~~c~~~~Vpvi~~~~tkeELG~a~ 127 (154)
.+.+.++++++|++|+|+|+++.|.++|+++|++|+++|||+|+|++|+. ++++..+|+.++|||+ |++|++|||++|
T Consensus 12 ~~~l~~kil~~L~lA~kagklv~G~~~v~kai~~gka~lViiA~D~~p~~~~~~l~~lc~~~~VP~~-~v~sk~eLG~a~ 90 (122)
T 3o85_A 12 NEELSLELLNLVKHGASLQAIKRGANEALKQVNRGKAELVIIAADADPIEIVLHLPLACEDKGVPYV-FIGSKNALGRAC 90 (122)
T ss_dssp CHHHHHHHHHHHHHHHHTTCEEESHHHHHHHHHTTCCSEEEEETTCSSGGGGTTHHHHHHTTTCCEE-EESCHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHhCCEeEcHHHHHHHHHcCCceEEEEeCCCChHHHHHHHHHHHHHhCCCEE-EECCHHHHHHHh
Confidence 35689999999999999999999999999999999999999999999975 7999999999999999 699999999999
Q ss_pred CCcccEEEEEEeCcCch
Q 047379 128 GKYFRVSCLSIIDPGDS 144 (154)
Q Consensus 128 Gk~~~vsvvaI~D~GfA 144 (154)
|+++++++++|+|+|..
T Consensus 91 Gk~~~vs~vaI~d~~~~ 107 (122)
T 3o85_A 91 NVSVPTIVASIGKHDAL 107 (122)
T ss_dssp TCSSCCSEEEECCCTTT
T ss_pred CCCCCEEEEEEEcccch
Confidence 99999989999999974
No 15
>2aif_A Ribosomal protein L7A; high-mobility like protein, transcription factor, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum} SCOP: d.79.3.1
Probab=99.92 E-value=3.1e-25 Score=168.22 Aligned_cols=97 Identities=16% Similarity=0.229 Sum_probs=90.3
Q ss_pred hhHHHHHHHHHHHHHHhCCceecHHHHHHHHhcCCceEEEEeCCCChhhh-hhHHHHHHhCCCcEEEecCCHHHHHhhhC
Q 047379 50 KKTHESINNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRK-SEIEYYAMLAKVGVHHYNGNNVDLGTACG 128 (154)
Q Consensus 50 ~~~~~kil~lLglA~rAGklv~G~~~VlkaIk~gkakLVIlA~Das~~~k-~ki~~~c~~~~Vpvi~~~~tkeELG~a~G 128 (154)
..+.++++++|++|+|+|+++.|.++|+++|++|+++|||+|+|++|+.. +++..+|+.++|||+ +++|++|||.+||
T Consensus 23 ~~l~~ki~~~L~lA~kagklv~G~~~v~kal~~gkaklViiA~D~~~~~~~~~l~~lc~~~~IP~~-~v~sk~eLG~a~G 101 (135)
T 2aif_A 23 PDLNNKIINLVQQACNYKQLRKGANEATKALNRGIAEIVLLAADAEPLEILLHLPLVCEDKNTPYV-FVRSKVALGRACG 101 (135)
T ss_dssp SHHHHHHHHHHHHHHHTTCEEESHHHHHHHHHTTCEEEEEEETTCSCHHHHHHHHHHHHHTTCCEE-EESCHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCCcccCHHHHHHHHHcCCCeEEEEecCCChHHHHhHHHHHHHhcCCcEE-EECCHHHHHHHhC
Confidence 45788999999999999999999999999999999999999999999865 999999999999999 5899999999999
Q ss_pred CcccEEEEEEeCcCchHHH
Q 047379 129 KYFRVSCLSIIDPGDSDII 147 (154)
Q Consensus 129 k~~~vsvvaI~D~GfA~~i 147 (154)
+++++++++|+|+|.++.+
T Consensus 102 ~~~~v~~vaI~d~~~s~i~ 120 (135)
T 2aif_A 102 VSRPVIAAAITSKDGSSLS 120 (135)
T ss_dssp CSSCCSEEEEECCTTCTTH
T ss_pred CCCcEEEEEEEcCCcHHHH
Confidence 9988878999999966543
No 16
>2ale_A SNU13, NHP2/L7AE family protein YEL026W; splicing, RNA, yeast, His-TAG, RNA binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: d.79.3.1 PDB: 1zwz_A 2ozb_A 3siu_A 3siv_A 1e7k_A
Probab=99.92 E-value=5.8e-25 Score=166.93 Aligned_cols=93 Identities=18% Similarity=0.255 Sum_probs=88.0
Q ss_pred hhhHHHHHHHHHHHHHHhCCceecHHHHHHHHhcCCceEEEEeCCCChh-hhhhHHHHHHhCCCcEEEecCCHHHHHhhh
Q 047379 49 TKKTHESINNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPL-RKSEIEYYAMLAKVGVHHYNGNNVDLGTAC 127 (154)
Q Consensus 49 ~~~~~~kil~lLglA~rAGklv~G~~~VlkaIk~gkakLVIlA~Das~~-~k~ki~~~c~~~~Vpvi~~~~tkeELG~a~ 127 (154)
..++.++++++|++|+++|+++.|.++|+++|++|+++|||||+|++|. +++++..+|+.++|||+ |++|+++||++|
T Consensus 13 ~~~~~~ki~~~L~lA~k~gkl~~G~~~v~kai~~gkakLViiA~D~~p~~~~~~l~~lc~~~~VP~~-~v~sk~eLG~a~ 91 (134)
T 2ale_A 13 DAALTQQILDVVQQAANLRQLKKGANEATKTLNRGISEFIIMAADCEPIEILLHLPLLCEDKNVPYV-FVPSRVALGRAC 91 (134)
T ss_dssp CHHHHHHHHHHHHHHHHTTCEEESHHHHHHHHHHTCEEEEEEETTCSSGGGGTHHHHHHHHHTCCEE-EESCHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHcCCcccCchHHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHHhcCCCEE-EECCHHHHHHHh
Confidence 3468899999999999999999999999999999999999999999995 99999999999999999 589999999999
Q ss_pred CCcccEEEEEEeCcC
Q 047379 128 GKYFRVSCLSIIDPG 142 (154)
Q Consensus 128 Gk~~~vsvvaI~D~G 142 (154)
|+++++++++|+|++
T Consensus 92 G~~~~~s~vaI~d~~ 106 (134)
T 2ale_A 92 GVSRPVIAASITTND 106 (134)
T ss_dssp TCSSCCSEEEEECCT
T ss_pred CCCCCeEEEEEEcCC
Confidence 999887789999986
No 17
>1xbi_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich fold, RNA binding protein/structural protein complex; HET: EPE; 1.45A {Methanocaldococcus jannaschii} SCOP: d.79.3.1 PDB: 1ra4_A* 1sds_A 3paf_A
Probab=99.92 E-value=2.9e-25 Score=165.15 Aligned_cols=98 Identities=22% Similarity=0.363 Sum_probs=91.3
Q ss_pred hhHHHHHHHHHHHHHHhCCceecHHHHHHHHhcCCceEEEEeCCCChh-hhhhHHHHHHhCCCcEEEecCCHHHHHhhhC
Q 047379 50 KKTHESINNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPL-RKSEIEYYAMLAKVGVHHYNGNNVDLGTACG 128 (154)
Q Consensus 50 ~~~~~kil~lLglA~rAGklv~G~~~VlkaIk~gkakLVIlA~Das~~-~k~ki~~~c~~~~Vpvi~~~~tkeELG~a~G 128 (154)
..+.++++++|++| |+++.|.++|+++|++|+++|||+|+|++|+ +++++..+|+.++|||+ |++|++|||.+||
T Consensus 14 ~~l~~k~~~ll~~A---gkl~~G~~~v~kai~~gka~lViiA~D~~p~~~~~~l~~lc~~~~VP~~-~v~sk~eLG~a~G 89 (120)
T 1xbi_A 14 EEIQKELLDAVAKA---QKIKKGANEVTKAVERGIAKLVIIAEDVKPEEVVAHLPYLCEEKGIPYA-YVASKQDLGKAAG 89 (120)
T ss_dssp HHHHHHHHHHHHTC---SEEEESHHHHHHHHHHTCCSEEEEESCCSSGGGTTTHHHHHHHHTCCEE-EESCHHHHHHHTT
T ss_pred HHHHHHHHHHHHHc---CCccccHHHHHHHHHcCCceEEEEcCCCChHHHHHHHHHHHHhcCCCEE-EeCCHHHHHHHhC
Confidence 56889999999999 9999999999999999999999999999997 59999999999999999 6999999999999
Q ss_pred CcccEEEEEEeCcCchHHHhcCC
Q 047379 129 KYFRVSCLSIIDPGDSDIIKSLP 151 (154)
Q Consensus 129 k~~~vsvvaI~D~GfA~~i~~~~ 151 (154)
+++++++++|+|.||++.+.+++
T Consensus 90 ~~~~~s~vaI~d~g~a~~l~~l~ 112 (120)
T 1xbi_A 90 LEVAASSVAIINEGDAEELKVLI 112 (120)
T ss_dssp CSSCCSEEEEEECSCHHHHHHHH
T ss_pred CCCCEEEEEEeccchHHHHHHHH
Confidence 99777789999999999877654
No 18
>2jnb_A NHP2-like protein 1; splicing, KINK-turn RNA-binding protein, NHPX, RNA binding protein; NMR {Homo sapiens} SCOP: d.79.3.1
Probab=99.91 E-value=3.6e-25 Score=170.15 Aligned_cols=96 Identities=15% Similarity=0.180 Sum_probs=89.7
Q ss_pred hhhHHHHHHHHHHHHHHhCCceecHHHHHHHHhcCCceEEEEeCCCChh-hhhhHHHHHHhCCCcEEEecCCHHHHHhhh
Q 047379 49 TKKTHESINNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPL-RKSEIEYYAMLAKVGVHHYNGNNVDLGTAC 127 (154)
Q Consensus 49 ~~~~~~kil~lLglA~rAGklv~G~~~VlkaIk~gkakLVIlA~Das~~-~k~ki~~~c~~~~Vpvi~~~~tkeELG~a~ 127 (154)
..++.++++++|++|+++|+++.|.++|+++|++|+++|||||+|++|. ++++++.+|+.++|||+ |++|+++||++|
T Consensus 31 ~~~l~~ki~~~L~lA~kagkl~~G~kev~KaI~~gkakLVIIA~D~~p~e~~~~l~~lC~~~~VP~~-~v~sk~eLG~a~ 109 (144)
T 2jnb_A 31 DAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYV-FVRSKQALGRAC 109 (144)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHHHTCEEEEEEETTCSCHHHHTTSCSSCGGGCCCCE-EESCSHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCEE-EECCHHHHHHHh
Confidence 3568899999999999999999999999999999999999999999995 99999999999999999 589999999999
Q ss_pred CCcccEEEEEEeCcCchH
Q 047379 128 GKYFRVSCLSIIDPGDSD 145 (154)
Q Consensus 128 Gk~~~vsvvaI~D~GfA~ 145 (154)
|+++++++++|+|+|.++
T Consensus 110 Gk~~~vs~vaI~~~~~s~ 127 (144)
T 2jnb_A 110 GVSRPVIACSVTIKEGSQ 127 (144)
T ss_dssp TCSSCCSEEEEECCTTCT
T ss_pred CCCCceEEEEEEeCCcHH
Confidence 999998889999986443
No 19
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=99.89 E-value=2.5e-23 Score=145.48 Aligned_cols=79 Identities=20% Similarity=0.319 Sum_probs=75.5
Q ss_pred HHHHHHhCCceecHHHHHHHHhcCCceEEEEeCCCChhhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCcccEEEEEEe
Q 047379 60 LALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSII 139 (154)
Q Consensus 60 LglA~rAGklv~G~~~VlkaIk~gkakLVIlA~Das~~~k~ki~~~c~~~~Vpvi~~~~tkeELG~a~Gk~~~vsvvaI~ 139 (154)
|...+|||+++.|.++|+++|++|+++|||||+|++|+++++++.+|+.++||++. ++|++|||++||+++++++++|+
T Consensus 3 ~~~~~kagk~~~G~~~v~kai~~gkaklViiA~D~~~~~~~~i~~lc~~~~Ip~~~-v~sk~eLG~a~Gk~~~~~~~ai~ 81 (82)
T 3v7e_A 3 YDKVSQAKSIIIGTKQTVKALKRGSVKEVVVAKDADPILTSSVVSLAEDQGISVSM-VESMKKLGKACGIEVGAAAVAII 81 (82)
T ss_dssp HHHHHHCSEEEESHHHHHHHHTTTCEEEEEEETTSCHHHHHHHHHHHHHHTCCEEE-ESCHHHHHHHHTCSSCCSEEEEE
T ss_pred HHHHHHcCCeeEcHHHHHHHHHcCCeeEEEEeCCCCHHHHHHHHHHHHHcCCCEEE-ECCHHHHHHHhCCCCCEEEEEEe
Confidence 45688999999999999999999999999999999999999999999999999995 88999999999999999999986
No 20
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Probab=99.88 E-value=2.3e-23 Score=156.69 Aligned_cols=94 Identities=13% Similarity=0.166 Sum_probs=87.4
Q ss_pred hhHHHHHHHHHHHHHHhCCceecHHHHHHHHhcCCceEEEEeCCCCh-hhhhhHHHHHHhCCCcEEEecCCHHHHHhhhC
Q 047379 50 KKTHESINNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPP-LRKSEIEYYAMLAKVGVHHYNGNNVDLGTACG 128 (154)
Q Consensus 50 ~~~~~kil~lLglA~rAGklv~G~~~VlkaIk~gkakLVIlA~Das~-~~k~ki~~~c~~~~Vpvi~~~~tkeELG~a~G 128 (154)
..+...+..+|++|+++|+++.|.++|+++|++|+++|||||+|++| +++++|+.+|+.++|||+ +++|+.+||++||
T Consensus 6 ~~i~~~l~~~L~~A~~~gkl~~G~~~v~Kai~~gka~LViiA~D~~p~~~~~~i~~lc~~~~Ip~~-~v~sk~~LG~a~G 84 (126)
T 2xzm_U 6 QQLNEVLAKVIKSSNCQDAISKGLHEVLRTIEAKQALFVCVAEDCDQGNYVKLVKALCAKNEIKYV-SVPKRASLGEYLG 84 (126)
T ss_dssp HHHHHHHHHHHTTTTSSSCEEESHHHHHHHHHHTCCSEEEEESSCCSTTHHHHHHHHHHHTTCCEE-EESCSHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHHcCCEeecHHHHHHHHHcCCceEEEEeCCCChHHHHHHHHHHHHHhCCCEE-EECCHHHHHHHHC
Confidence 45778999999999999999999999999999999999999999975 999999999999999999 5899999999999
Q ss_pred C-----------cccEEEEEEeCcCch
Q 047379 129 K-----------YFRVSCLSIIDPGDS 144 (154)
Q Consensus 129 k-----------~~~vsvvaI~D~GfA 144 (154)
+ .+++++++|+|+|..
T Consensus 85 ~~k~d~~g~~rk~v~~s~vaI~d~g~~ 111 (126)
T 2xzm_U 85 HFTANAKGEIKKVKGCSSLAIRKYAPE 111 (126)
T ss_dssp CCCBCTTCCBSCCCCCCEEEESSCCTT
T ss_pred CCccccccCcCceeeEEEEEEEecCcc
Confidence 6 555789999999976
No 21
>3u5c_M 40S ribosomal protein S12, 40S ribosomal protein S11-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_M
Probab=99.84 E-value=3.8e-22 Score=153.34 Aligned_cols=102 Identities=15% Similarity=0.104 Sum_probs=91.8
Q ss_pred hHHHHHHHHHHHHHHhCCceecHHHHHHHHhcCCceEEEEeCCCC-hhhhhhHHHHHH--hCCCcEEEecCCHHHHHhhh
Q 047379 51 KTHESINNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCP-PLRKSEIEYYAM--LAKVGVHHYNGNNVDLGTAC 127 (154)
Q Consensus 51 ~~~~kil~lLglA~rAGklv~G~~~VlkaIk~gkakLVIlA~Das-~~~k~ki~~~c~--~~~Vpvi~~~~tkeELG~a~ 127 (154)
++...+..+|+.|+++|+++.|.+++.++|++|+++|||||+|++ +++.++|..+|+ +++||++ +++|+.+||++|
T Consensus 23 d~~~aL~~vLk~A~~~g~l~~G~~et~Kal~kg~a~LvvLA~D~~~~~i~k~i~~lC~~~e~~IP~i-~V~s~keLG~a~ 101 (143)
T 3u5c_M 23 TIEDALKVVLRTALVHDGLARGLRESTKALTRGEALLVVLVSSVTEANIIKLVEGLANDPENKVPLI-KVADAKQLGEWA 101 (143)
T ss_dssp CSSHHHHHHHHHHHHTTCEEESHHHHHHHHSSTTCSCEECCSCCSTTHHHHHHHHHHHCSSSCCCCC-CCSCHHHHHHHS
T ss_pred cHHHHHHHHHHHHHHcCCEeEcHHHHHHHHhcCceeEEEEeCCCCHHHHHHHHHHHHhhhhhCCCEE-EECCHHHHhHHh
Confidence 366889999999999999999999999999999999999999998 689999999999 9999999 699999999999
Q ss_pred CC--------cc---cEEEEEEeCcCchHHHhcCCCC
Q 047379 128 GK--------YF---RVSCLSIIDPGDSDIIKSLPGD 153 (154)
Q Consensus 128 Gk--------~~---~vsvvaI~D~GfA~~i~~~~~~ 153 (154)
|. ++ .+++++|+|.|+.....+++.+
T Consensus 102 Gl~k~d~~Gk~rkVv~~s~v~I~d~G~~~~~~~~l~~ 138 (143)
T 3u5c_M 102 GLGKIDREGNARKVVGASVVVVKNWGAETDELSMIME 138 (143)
T ss_dssp SCCCCSSSSCCSCCCCCSCEEESCCCCCSHHHHHHHH
T ss_pred CcCccccCCCccccceeEEEEEcccchhhHHHHHHHH
Confidence 94 33 3668999999998877766543
No 22
>3jyw_G 60S ribosomal protein L8(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_G
Probab=99.74 E-value=7.7e-19 Score=130.08 Aligned_cols=79 Identities=15% Similarity=0.172 Sum_probs=72.1
Q ss_pred HHhCCceecHHHHHHHHhcCCceEEEEeCCCChh-hhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCcccEEEEEEeCcC
Q 047379 64 MKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPL-RKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPG 142 (154)
Q Consensus 64 ~rAGklv~G~~~VlkaIk~gkakLVIlA~Das~~-~k~ki~~~c~~~~Vpvi~~~~tkeELG~a~Gk~~~vsvvaI~D~G 142 (154)
.|-..|..|.++|+++|++|+++|||||+|++|. ...++..+|+.+||||+ |++|+++||++||++.++ +++|+|.|
T Consensus 21 ~~~~~l~~G~~~v~kaI~~gka~LVvIA~D~~p~~i~~~l~~lC~~~~VP~~-~v~sk~~LG~a~G~k~~a-~vai~d~~ 98 (113)
T 3jyw_G 21 PKPYAVKYGLNHVVALIENKKAKLVLIANDVDPIELVVFLPALCKKMGVPYA-IVKGKARLGTLVNQKTSA-VAALTEVR 98 (113)
T ss_dssp SSSSCEEESHHHHHHTTTTTCCSEEEECSCCSSHHHHTTHHHHHHHTTCCCE-ECSCSTTTHHHHCSSSCC-SEEEECSC
T ss_pred CCCchhhchHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHHcCCCEE-EECCHHHHHHHHCCCCcE-EEEEEeCC
Confidence 4566789999999999999999999999999995 67999999999999999 699999999999999765 79999988
Q ss_pred ch
Q 047379 143 DS 144 (154)
Q Consensus 143 fA 144 (154)
..
T Consensus 99 ~e 100 (113)
T 3jyw_G 99 AE 100 (113)
T ss_dssp SS
T ss_pred HH
Confidence 64
No 23
>2zkr_f 60S ribosomal protein L7A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=99.69 E-value=3.7e-17 Score=136.33 Aligned_cols=78 Identities=12% Similarity=0.111 Sum_probs=70.6
Q ss_pred HhCCceecHHHHHHHHhcCCceEEEEeCCCCh-hhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCcccEEEEEEeCcCc
Q 047379 65 KSGKYTLGYKTVLRSLRTSKGKLIILSNNCPP-LRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGD 143 (154)
Q Consensus 65 rAGklv~G~~~VlkaIk~gkakLVIlA~Das~-~~k~ki~~~c~~~~Vpvi~~~~tkeELG~a~Gk~~~vsvvaI~D~Gf 143 (154)
+.++++.|.++|+++|++|+++|||||+|++| ..+..+..+|+.++|||+ |++|+++||.+||++.++ +|||+|.|.
T Consensus 132 ~~~~L~~G~keV~KaIekgkAkLVIIA~DasP~ei~~~Lp~LC~~~~VPyi-~v~sk~eLG~A~Gkk~~s-~VAItD~G~ 209 (266)
T 2zkr_f 132 RPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYC-IIKGKARLGHLVHRKTCT-TVAFTQVNS 209 (266)
T ss_dssp SCCCCCBSHHHHHHHHHTTCCSEEEEESCCSSSTTTTHHHHHHHHHTCCEE-EESCHHHHHHHHTSSCCS-EEEETTCSS
T ss_pred CCCeeeeChHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHhcCCCEE-EECCHHHHHHHhCCCCce-EEEEeecCc
Confidence 45889999999999999999999999999999 566778999999999999 589999999999999554 899998875
Q ss_pred h
Q 047379 144 S 144 (154)
Q Consensus 144 A 144 (154)
.
T Consensus 210 e 210 (266)
T 2zkr_f 210 E 210 (266)
T ss_dssp T
T ss_pred c
Confidence 4
No 24
>2kg4_A Growth arrest and DNA-damage-inducible protein GA alpha; GADD45, flexible regions, monomer cycle; NMR {Homo sapiens}
Probab=99.67 E-value=1.9e-16 Score=124.12 Aligned_cols=94 Identities=14% Similarity=0.151 Sum_probs=85.2
Q ss_pred hhHHHHHHHHHHHHHHhCCceecHHHHHHHH--hcCCceEEEEeCCCC-hhh------hhhHHHHHHhCCCcEEEecCCH
Q 047379 50 KKTHESINNRLALVMKSGKYTLGYKTVLRSL--RTSKGKLIILSNNCP-PLR------KSEIEYYAMLAKVGVHHYNGNN 120 (154)
Q Consensus 50 ~~~~~kil~lLglA~rAGklv~G~~~VlkaI--k~gkakLVIlA~Das-~~~------k~ki~~~c~~~~Vpvi~~~~tk 120 (154)
+.+.+.++.+|..|+..++++.|.+++.++| .+|.+++||||.|++ |.. ...+..+|++++||++ |+.|+
T Consensus 17 ~~l~~al~evLk~A~~~~~l~~G~kEt~KaL~~~k~~a~lcvLA~D~d~~~~i~~hi~~~li~alC~E~~Ip~i-~V~s~ 95 (165)
T 2kg4_A 17 DKVGDALEEVLSKALSQRTITVGVYEAAKLLNVDPDNVVLCLLAADEDDDRDVALQIHFTLIQAFCCENDINIL-RVSNP 95 (165)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEECGGGHHHHHHHCTTTEEEEEEECCTGGGGCHHHHHHHHHHHHHHHHTTCCEE-EESCH
T ss_pred HHHHHHHHHHHHHHHHcCCeeecHHHHHHHHhcCCCcEEEEEEeCCCCccchhhhhccHHHHHHHHHHcCCCEE-EECCH
Confidence 5788999999999999999999999999999 999999999999997 555 5667899999999999 69999
Q ss_pred HHHHhhhCC--------------cccEEEEEEeCcCch
Q 047379 121 VDLGTACGK--------------YFRVSCLSIIDPGDS 144 (154)
Q Consensus 121 eELG~a~Gk--------------~~~vsvvaI~D~GfA 144 (154)
++||++||. ++.+++++|+|+|-.
T Consensus 96 k~LG~a~Gi~~~~~~~~~d~~g~~r~~scv~V~~~g~~ 133 (165)
T 2kg4_A 96 GRLAELLLLETDAGPAASEGAEQPPDLHCVLVTNPHSS 133 (165)
T ss_dssp HHHHHHHHHTTTCSSCCCCSSCCCSCSCEEEEECCSSC
T ss_pred HHHHHHHCCcccccccccccCCCcccceEEEEeccccc
Confidence 999999996 355778999999965
No 25
>3izc_H 60S ribosomal protein RPL8 (L7AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_H 3o58_H 3o5h_H 3u5e_G 3u5i_G 4b6a_G
Probab=99.64 E-value=2.3e-16 Score=130.84 Aligned_cols=75 Identities=16% Similarity=0.216 Sum_probs=67.6
Q ss_pred ceecHHHHHHHHhcCCceEEEEeCCCChh-hhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCcccEEEEEEeCcCchH
Q 047379 69 YTLGYKTVLRSLRTSKGKLIILSNNCPPL-RKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSD 145 (154)
Q Consensus 69 lv~G~~~VlkaIk~gkakLVIlA~Das~~-~k~ki~~~c~~~~Vpvi~~~~tkeELG~a~Gk~~~vsvvaI~D~GfA~ 145 (154)
|..|.++|+++|++|+++|||||+|++|. ....+..+|+.++|||+ |++|++|||.+||+..++ +|||+|.|..+
T Consensus 132 lk~G~keV~KaIekgKAkLVVIA~DadP~eivk~LpaLC~k~gVPy~-~V~sK~eLG~A~Gkk~~s-~VAItD~g~eD 207 (256)
T 3izc_H 132 VKYGLNHVVALIENKKAKLVLIANDVDPIELVVFLPALCKKMGVPYA-IVKGKARLGTLVNQKTSA-VAALTEVRAED 207 (256)
T ss_dssp EEESHHHHHHHHHHTCCSEEEEESCCSSGGGTTHHHHHHHHHTCCEE-EESCHHHHHHHTTCSSCC-SEEEESSCCSC
T ss_pred hhccHHHHHHHHHhCcceEEEEeCCCChHHHHHHHHHHHHhcCCCEE-EECCHHHHHHHhCCCCcE-EEEeecCChhh
Confidence 56799999999999999999999999996 45666999999999999 699999999999999655 89999999643
No 26
>4a17_F RPL7A, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_F 4a1c_F 4a1e_F
Probab=99.53 E-value=1.8e-14 Score=119.36 Aligned_cols=75 Identities=11% Similarity=0.220 Sum_probs=67.7
Q ss_pred CceecHHHHHHHHhcCCceEEEEeCCCChh-hhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCcccEEEEEEeCcCch
Q 047379 68 KYTLGYKTVLRSLRTSKGKLIILSNNCPPL-RKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDS 144 (154)
Q Consensus 68 klv~G~~~VlkaIk~gkakLVIlA~Das~~-~k~ki~~~c~~~~Vpvi~~~~tkeELG~a~Gk~~~vsvvaI~D~GfA 144 (154)
.|..|.++|.++|++|+++|||||.|++|. .+..+..+|++++|||+ ++.++++||.+||+..++ +|+|+|.|..
T Consensus 124 ~lk~GvneVtKaIekgKAqLVVIA~DvdPielv~~LPaLCee~~VPY~-~V~sK~~LG~avGrKt~s-~Vaitdv~~E 199 (255)
T 4a17_F 124 VLKYGLNHITTLIENKQAKLVVIAHDVDPIELVIFLPQLCRKNDVPFA-FVKGKAALGKLVNKKTAT-AVALTEVRNE 199 (255)
T ss_dssp CEEECHHHHHHHHHTSCCSEEEEESCCSSTHHHHHHHHHHHHTTCCEE-EESCHHHHHHHHTSSCCS-EEEECCCCHH
T ss_pred eeecchHHHHHHHHcCCceEEEEeCCCChHHHHHHHHHHHHHcCCCEE-EECCHHHHHHHhCCCcce-EEEeeccCHH
Confidence 356799999999999999999999999996 46788999999999999 599999999999999655 7999988864
No 27
>3iz5_H 60S ribosomal protein L7A (L7AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_H
Probab=99.36 E-value=2.8e-12 Score=106.17 Aligned_cols=75 Identities=15% Similarity=0.146 Sum_probs=68.2
Q ss_pred CceecHHHHHHHHhcCCceEEEEeCCCCh-hhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCcccEEEEEEeCcCch
Q 047379 68 KYTLGYKTVLRSLRTSKGKLIILSNNCPP-LRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDS 144 (154)
Q Consensus 68 klv~G~~~VlkaIk~gkakLVIlA~Das~-~~k~ki~~~c~~~~Vpvi~~~~tkeELG~a~Gk~~~vsvvaI~D~GfA 144 (154)
.+..|.++|.++|.++++.|||||.|++| ++...+..+|++.||||+ ++.++.+||.++|+..++ +|+|+|.|..
T Consensus 127 ~lk~GvneVTklVE~kKAqLVVIA~DVdPiElV~fLPaLC~k~gVPY~-iVk~KarLG~~vgrKtct-~Va~t~v~~e 202 (258)
T 3iz5_H 127 VVKYGLNHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKMEVPYC-IVKGKARLGSIVHKKTAS-VLCLTTVKNE 202 (258)
T ss_dssp CEEESHHHHHHHHHTTCEEEEEEESCCSSTHHHHHHHHHHTTTTCCEE-EESCHHHHHHHTTCSSCC-SEEEEESCCS
T ss_pred eeecccHHHHHHHHcCcceEEEEeCCCChHHHHhHHHHHHHhcCCCeE-EECCHHHHHHHhCCccce-EEEEEecCHH
Confidence 45679999999999999999999999999 678999999999999999 599999999999999755 7999987753
No 28
>3cg6_A Growth arrest and DNA-damage-inducible 45 gamma; alpha/beta, cell cycle; 1.70A {Mus musculus} PDB: 2wal_A
Probab=99.11 E-value=4.9e-10 Score=86.11 Aligned_cols=93 Identities=14% Similarity=0.246 Sum_probs=80.4
Q ss_pred hhHHHHHHHHHHHHHHhCCceecHHHHHHHHhcC--CceEEEEeCCCC-------hhhhhhHHHHHHhCCCcEEEecCCH
Q 047379 50 KKTHESINNRLALVMKSGKYTLGYKTVLRSLRTS--KGKLIILSNNCP-------PLRKSEIEYYAMLAKVGVHHYNGNN 120 (154)
Q Consensus 50 ~~~~~kil~lLglA~rAGklv~G~~~VlkaIk~g--kakLVIlA~Das-------~~~k~ki~~~c~~~~Vpvi~~~~tk 120 (154)
+.+...+-..|..|...+.|+.|..++.++|.++ .+.|.+||+|++ +...+-|+.+|.+++||+|. +.+.
T Consensus 7 ~~v~~ALqeVLk~Al~~dgL~~Gl~EaaKaLdk~p~~a~lCvLA~dcd~e~D~a~~~y~kLveAlC~E~~I~lIk-Vdd~ 85 (146)
T 3cg6_A 7 QGAGKALHELLLSAQRQGCLTAGVYESAKVLNVDPDNVTFCVLAADEEDEGDIALQIHFTLIQAFCCENDIDIVR-VGDV 85 (146)
T ss_dssp SCHHHHHHHHHHHHHHHTCEEESHHHHHHHHHHCGGGEEEEEEECCTGGGGCHHHHHHHHHHHHHHHHTTCEEEE-ECCH
T ss_pred cCHHHHHHHHHHHHHHhCCccccHHHHHHHHhcCCCeEEEEEecCCCccccchhHHHHHHHHHHHHhhcCCCeEE-eCch
Confidence 4567788889999999999999999999999997 899999999998 36778899999999999996 9999
Q ss_pred HHHHhhhCC------cccEEEEEEeCcCc
Q 047379 121 VDLGTACGK------YFRVSCLSIIDPGD 143 (154)
Q Consensus 121 eELG~a~Gk------~~~vsvvaI~D~Gf 143 (154)
+.||.++|+ ++.+++|.|+|.|-
T Consensus 86 kkLgew~Gk~d~~g~pr~~sCvvV~d~g~ 114 (146)
T 3cg6_A 86 QRLAAIVGSDEEGGAPGDLHCILISNPNE 114 (146)
T ss_dssp HHHHHHC----------CCSEEEEECCC-
T ss_pred hHHHHHhCCcCCCCCCCCCEEEEEecCCc
Confidence 999999995 44577899999984
No 29
>3ffm_A Growth arrest and DNA-damage-inducible protein GADD45 gamma; beta-turn-helix, cell cycle; 2.30A {Homo sapiens}
Probab=98.99 E-value=3.9e-09 Score=82.54 Aligned_cols=95 Identities=14% Similarity=0.211 Sum_probs=83.1
Q ss_pred hhhhHHHHHHHHHHHHHHhCCceecHHHHHHHHhcC--CceEEEEeCCCC--hh-----hhhhHHHHHHhCCCcEEEecC
Q 047379 48 KTKKTHESINNRLALVMKSGKYTLGYKTVLRSLRTS--KGKLIILSNNCP--PL-----RKSEIEYYAMLAKVGVHHYNG 118 (154)
Q Consensus 48 k~~~~~~kil~lLglA~rAGklv~G~~~VlkaIk~g--kakLVIlA~Das--~~-----~k~ki~~~c~~~~Vpvi~~~~ 118 (154)
+++.+...+-..|..|...+.|+.|..++.++|.+. .+.|.+||+|++ ++ ..+-|+.+|.+++||++. +.
T Consensus 26 ~m~~v~~ALqeVLk~Al~~dgL~~Gl~EaaKaLd~~p~~a~LCvLA~dc~~e~D~alqmy~kLVeAlC~E~~I~LIk-V~ 104 (167)
T 3ffm_A 26 RMQGAGKALHELLLSAQRQGCLTAGVYESAKVLNVDPDNVTFCVLAAGEEDEGDIALQIHFTLIQAFCCENDIDIVR-VG 104 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEESHHHHHHHHHHCGGGEEEEEEECCGGGTTCHHHHHHHHHHHHHHHHTTCEEEE-ES
T ss_pred hhhhHHHHHHHHHHHHHHhCCccccHHHHHHHhccCCCeEEEEEEeCCCCcccchhHHHHHHHHHHHHhhcCCCeEE-eC
Confidence 346677888899999999999999999999999874 799999999985 23 478889999999999996 99
Q ss_pred CHHHHHhhhCC------cccEEEEEEeCcCc
Q 047379 119 NNVDLGTACGK------YFRVSCLSIIDPGD 143 (154)
Q Consensus 119 tkeELG~a~Gk------~~~vsvvaI~D~Gf 143 (154)
+...||.++|+ +..+++|.|+|.|-
T Consensus 105 d~kkLgew~G~~~~~~k~~~csCVlVtd~ge 135 (167)
T 3ffm_A 105 DVQRLAAIVGAGEEAGAPGDLHCILISNPNE 135 (167)
T ss_dssp CHHHHHHHHTTSCCSSSCSCCSEEEEECSSS
T ss_pred CcchHHHHhCcCCCCCCCCccEEEEECCCCc
Confidence 99999999995 34578899999985
No 30
>1g2r_A Hypothetical cytosolic protein; NUSA-INFB operon, structural genomics, PSI, protein structure initiative; 1.35A {Streptococcus pneumoniae} SCOP: d.192.1.1
Probab=98.43 E-value=3.5e-08 Score=71.31 Aligned_cols=29 Identities=17% Similarity=0.064 Sum_probs=28.2
Q ss_pred cccchhhhhcchhHHHHHhhhhhhhhhhh
Q 047379 20 LLGLVCYFAAAREVFFGATKQSKMVTSKK 48 (154)
Q Consensus 20 ~~grg~y~~~~~~~~~~a~~~~~~~~~~k 48 (154)
+-|||||.|.+.+|++.|.+++.|.|+||
T Consensus 45 ~~GRGaYvc~~~~cl~~A~kkk~l~Ralk 73 (100)
T 1g2r_A 45 ANGRGAYIKLDNAEALEAKKKKVFNRSFS 73 (100)
T ss_dssp CCSEEEEEESCHHHHHHHHHHTHHHHHHT
T ss_pred CCCCEEEeCCCHHHHHHHHHHCHHHHHhC
Confidence 57999999999999999999999999999
No 31
>3ir9_A Peptide chain release factor subunit 1; structural genomics, APC36528.1, C-terminal domain, PSI-2, protein structure initiative; 2.21A {Methanosarcina mazei}
Probab=95.95 E-value=0.044 Score=42.10 Aligned_cols=76 Identities=20% Similarity=0.233 Sum_probs=59.9
Q ss_pred hhhHHHHHHHHHHHHHHhCCceecHHHHHHHHhcCCceEEEEeCCCChh-------------------------------
Q 047379 49 TKKTHESINNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPL------------------------------- 97 (154)
Q Consensus 49 ~~~~~~kil~lLglA~rAGklv~G~~~VlkaIk~gkakLVIlA~Das~~------------------------------- 97 (154)
.+++.++++..| +...|+.+.|.++|++|+..|-+..+||..|....
T Consensus 29 Ekkli~~f~~~i--~~d~g~~~yG~~ev~~Ale~GAVetLlv~e~l~~~r~~~~c~~~~~~~~~~~~~~~~~~~~~~~~c 106 (166)
T 3ir9_A 29 QKNAVRDFFKEL--IADSGKVAYGESQVRANLEINSVDVLLLSEDLRAERVTTKCSVCGYENKWTRRWKPGEPAPAAGNC 106 (166)
T ss_dssp HHHHHHHHHHHH--HTCTTCEEESHHHHHHHHTTTCEEEEEEETTCCCEEEEEEESSSSCEEEEEECCCC--CCCCCCBC
T ss_pred HHHHHHHHHHHH--hhCCCcEEEcHHHHHHHHHhCCceEEEEecCccceEEEEECCCCCceeEEEeecChhhcccccccc
Confidence 555777777776 45689999999999999999999999999886432
Q ss_pred --------------hhhhHHHHHHhCCCcEEEecCCHHHHHhhh
Q 047379 98 --------------RKSEIEYYAMLAKVGVHHYNGNNVDLGTAC 127 (154)
Q Consensus 98 --------------~k~ki~~~c~~~~Vpvi~~~~tkeELG~a~ 127 (154)
..+.+...++.+|..+. ++.++.+-|.-+
T Consensus 107 ~~~g~~~~~~e~~~~ve~L~e~~~~~G~~v~-ivs~~~eeG~ql 149 (166)
T 3ir9_A 107 PKCGSSLEVTDVTDIVDEFSELADKSNAKVV-FVSTDFDEGSQL 149 (166)
T ss_dssp TTTCCBEEEEEEEEHHHHHHHHHHHTTCEEE-EECSCSHHHHHH
T ss_pred cccCccchhhhHHHHHHHHHHHHHhcCCEEE-EECCCChhHHHH
Confidence 24567788888898888 477777766644
No 32
>3oby_A Protein pelota homolog; SM fold, hydrolase; 2.90A {Archaeoglobus fulgidus}
Probab=94.97 E-value=0.07 Score=45.52 Aligned_cols=101 Identities=7% Similarity=-0.011 Sum_probs=70.7
Q ss_pred HHHHHhhhhhhhhhhh------hhhHHHHHHHHHHHHHHhCCceecHHHHHHHHhcCCceEEEEeCCCChh-----hhhh
Q 047379 33 VFFGATKQSKMVTSKK------TKKTHESINNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPL-----RKSE 101 (154)
Q Consensus 33 ~~~~a~~~~~~~~~~k------~~~~~~kil~lLglA~rAGklv~G~~~VlkaIk~gkakLVIlA~Das~~-----~k~k 101 (154)
=+..++++..+....+ +.++.++++..|. .. |+.+.|.++|++|+..|-+.-++|..|.-.+ ....
T Consensus 227 gl~Evl~~~~v~~~L~~~k~~~E~~~le~f~~~l~--~d-~~a~YG~~eV~~Ale~GAVetLLIsd~l~r~~r~~~~~~~ 303 (352)
T 3oby_A 227 GFIEILKRRVVDKIVGEVRLAEEAEYIDRLLEGIA--KG-ERVAYGLDEVREAHNYRAIEVLLVADEFLLEEREKWDVDG 303 (352)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHH--HT-CSEEESHHHHHHHHTTTCEEEEEEEHHHHHHHTTTSCHHH
T ss_pred hHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHh--cC-CcEEECHHHHHHHHHcCCceEEEEeccchhcccchHHHHH
Confidence 3555665554433333 5557788888875 34 9999999999999999999999999775432 3466
Q ss_pred HHHHHHhCCCcEEEecCCHHHHHhhhCCcccEEEEEEe
Q 047379 102 IEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSII 139 (154)
Q Consensus 102 i~~~c~~~~Vpvi~~~~tkeELG~a~Gk~~~vsvvaI~ 139 (154)
+...++..|..+.. +.+.-+-|.-+ +...- +.||+
T Consensus 304 l~e~~~~~G~~v~i-~S~~~e~G~qL-~~lGG-IaAiL 338 (352)
T 3oby_A 304 LLREVEESGGKVVI-MSTEFEPGKRL-MSLGG-IAALL 338 (352)
T ss_dssp HHHHHHHTTCEEEE-ECTTSHHHHHH-HHTTS-EEEEE
T ss_pred HHHHHHHcCCEEEE-EcCCCcchhHH-hcCCC-EEEEE
Confidence 77888889999884 67765555544 34333 56765
No 33
>1gz0_A Hypothetical tRNA/RRNA methyltransferase YJFH; 2'O-methyltransferase, knot, montreal- kingston bacterial structural genomics initiative, BSGI; 2.5A {Escherichia coli} SCOP: c.116.1.1 d.79.3.3
Probab=94.85 E-value=0.057 Score=43.67 Aligned_cols=72 Identities=11% Similarity=0.054 Sum_probs=55.6
Q ss_pred CceecHHHHHHHHhcC--CceEEEEeCCCChhhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCcccEEEEEEeCc
Q 047379 68 KYTLGYKTVLRSLRTS--KGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDP 141 (154)
Q Consensus 68 klv~G~~~VlkaIk~g--kakLVIlA~Das~~~k~ki~~~c~~~~Vpvi~~~~tkeELG~a~Gk~~~vsvvaI~D~ 141 (154)
.++.|.+.|.++++.+ .+.-|+++.+..+....++...++..+||+. .-++++|-+..+....-.++|+..+
T Consensus 13 ~~veG~~~V~eal~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~~~i~v~--~v~~~~l~~ls~~~~~qGv~a~~~~ 86 (253)
T 1gz0_A 13 EMIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESQGVVIQ--LANRQYLDEKSDGAVHQGIIARVKP 86 (253)
T ss_dssp EEEESHHHHHHHHHSCGGGEEEEEEESSCCCTTTHHHHHHHHHHTCEEE--EECSHHHHHTTTSCCCTTEEEEECC
T ss_pred EEEEEHHHHHHHHhcCCCCeEEEEEECCccchhHHHHHHHHHHCCCcEE--EeCHHHHHHHhCCCCCcEEEEEEec
Confidence 5788999999999988 4788888887655445677777888899997 3678999999986444446777654
No 34
>2qi2_A Pelota, cell division protein pelota related protein; DOM34, cell cycle; 2.90A {Thermoplasma acidophilum} SCOP: b.38.4.1 c.55.4.2 d.79.3.2
Probab=94.84 E-value=0.063 Score=45.59 Aligned_cols=101 Identities=11% Similarity=0.031 Sum_probs=69.3
Q ss_pred HHHHHhhhhhhhhhhh------hhhHHHHHHHHHHHHHHhCCceecHHHHHHHHhcCCceEEEEeCCCC-hhhhhhHHHH
Q 047379 33 VFFGATKQSKMVTSKK------TKKTHESINNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCP-PLRKSEIEYY 105 (154)
Q Consensus 33 ~~~~a~~~~~~~~~~k------~~~~~~kil~lLglA~rAGklv~G~~~VlkaIk~gkakLVIlA~Das-~~~k~ki~~~ 105 (154)
=+..++++..+....+ +.++.++++..|. .++.+.|.++|++|+..|-+..+++..|.- ..-...+...
T Consensus 228 gl~Evl~~~~v~~~L~~~k~~~E~~~l~~f~~~l~----~d~~~YG~~eV~~Ale~GAVetLlV~d~l~rr~~~~~L~e~ 303 (347)
T 2qi2_A 228 AVYEFITSADGAKLLSNERIARDKEIVDEFLVAVK----KDMGVYGRDQTESALQMGALSDLIITDEMFRTEDGRRSLSI 303 (347)
T ss_dssp HHHHHHHSHHHHHHHTTSHHHHHHHHHHHHHHHHH----TTCEEESHHHHHHHHHTTCEEEEEEEHHHHTSHHHHHHHHH
T ss_pred cHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHh----cCCEEEcHHHHHHHHHcCCCeEEEEecccccchhHHHHHHH
Confidence 3555566554433333 3445566655543 229999999999999999999999999864 2226777888
Q ss_pred HHhCCCcEEEecCCHHHHHhhhCCcccEEEEEEeC
Q 047379 106 AMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIID 140 (154)
Q Consensus 106 c~~~~Vpvi~~~~tkeELG~a~Gk~~~vsvvaI~D 140 (154)
++..|..+. ++.+.-+-|.-+ +...- +.||+-
T Consensus 304 ~~~~G~~V~-ivs~~~e~G~qL-~~lGG-IAaiLR 335 (347)
T 2qi2_A 304 AQTVGTRIH-IVSVSNDPGQIV-KKFGG-FAGILR 335 (347)
T ss_dssp HHHHTCEEE-EECTTSHHHHHH-HHTTS-EEEEEC
T ss_pred HHHcCCEEE-EECCCCcchHHH-HhcCC-EEEEEe
Confidence 888999998 467776666666 44443 566653
No 35
>3nk6_A 23S rRNA methyltransferase; nosiheptide, nosiheptide-resistance methyltransferase, 23S R methyltransferase; 2.00A {Streptomyces actuosus} PDB: 3nk7_A* 3gyq_A*
Probab=94.00 E-value=0.12 Score=42.53 Aligned_cols=70 Identities=7% Similarity=-0.034 Sum_probs=52.3
Q ss_pred CceecHHHHHHHHhcC-CceEEEEeCCCChhhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCcccEEEEEEeCc
Q 047379 68 KYTLGYKTVLRSLRTS-KGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDP 141 (154)
Q Consensus 68 klv~G~~~VlkaIk~g-kakLVIlA~Das~~~k~ki~~~c~~~~Vpvi~~~~tkeELG~a~Gk~~~vsvvaI~D~ 141 (154)
-++.|.+.|.++|+.| .+.-|+++.+..+. ..+...|...++|+.. -+.++|.+..+....-.++|+.++
T Consensus 35 flveG~~~V~eaL~~~~~i~~l~~~~~~~~~--~~l~~~~~~~~~~v~~--v~~~~l~~ls~~~~~qGv~a~~~~ 105 (277)
T 3nk6_A 35 TLIEDTEPLMECIRAGVQFIEVYGSSGTPLD--PALLDLCRQREIPVRL--IDVSIVNQLFKAERKAKVFGIARV 105 (277)
T ss_dssp EEEESHHHHHHHHHTTCCEEEEEEETTSCCC--HHHHHHHHHTTCCEEE--ECHHHHTTCC-----CCEEEEEEC
T ss_pred EEEEeHHHHHHHHhCCCCeEEEEEeCCccCc--HHHHHHHHhcCCcEEE--ECHHHHHHhhCCCCCCeEEEEEec
Confidence 3788999999999988 57788888887665 5677778889999973 689999999986444456777643
No 36
>3obw_A Protein pelota homolog; SM fold, hydrolase; 2.60A {Sulfolobus solfataricus}
Probab=94.00 E-value=0.1 Score=44.66 Aligned_cols=86 Identities=13% Similarity=0.037 Sum_probs=59.7
Q ss_pred hhhHHHHHHHHHHHHHHhCCceecHHHHHHHHhcCCceEEEEeCCCCh------hhhhhHHHHHHhCCCcEEEecCCHHH
Q 047379 49 TKKTHESINNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPP------LRKSEIEYYAMLAKVGVHHYNGNNVD 122 (154)
Q Consensus 49 ~~~~~~kil~lLglA~rAGklv~G~~~VlkaIk~gkakLVIlA~Das~------~~k~ki~~~c~~~~Vpvi~~~~tkeE 122 (154)
++++.++++..| +...|+.+.|.++|++|+..|-+..+++..|.-. +....+...++.+|..+.. +.+.-+
T Consensus 268 E~~lle~f~~~l--~~d~g~a~yG~~eV~~Ale~GAVetLLV~d~l~r~~d~~r~~~~~l~e~v~~~Gg~V~i-vs~~~e 344 (364)
T 3obw_A 268 GAKKMEKAMELL--AKQPELVTYGLEQVKNAIEMGAVETVLVIEDLLSSDEQERLTIERMLEDIENKRGEVIL-VPKESP 344 (364)
T ss_dssp HHHHHHHHHHHH--TTSCSSEEESHHHHHHHHHHTCEEEEEEEGGGGSSCHHHHHHHHHHHHHHHTTTCEEEE-ECTTST
T ss_pred HHHHHHHHHHHH--hcCCCcEEECHHHHHHHHHhCCCcEEEEeccCcccccchHHHHHHHHHHHHhcCCEEEE-ECCCCC
Confidence 444566666665 3356999999999999999999999999988643 2346677778888988884 666544
Q ss_pred HHhhhCCcccEEEEEEe
Q 047379 123 LGTACGKYFRVSCLSII 139 (154)
Q Consensus 123 LG~a~Gk~~~vsvvaI~ 139 (154)
-|.-+ +...- +.||+
T Consensus 345 ~G~qL-~~lGG-IAAiL 359 (364)
T 3obw_A 345 IYFEL-KNLTG-ILAIL 359 (364)
T ss_dssp THHHH-HHTTT-EEEEE
T ss_pred Cchhh-hcCCc-EEEEE
Confidence 44433 23222 45554
No 37
>1x52_A Pelota homolog, CGI-17; ERF1_3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.79.3.2
Probab=93.73 E-value=0.099 Score=38.31 Aligned_cols=84 Identities=12% Similarity=0.039 Sum_probs=58.8
Q ss_pred hHHHHHHHHHHHHHHhCCceecHHHHHHHHhcCCceEEEEeCCC----Chhhhhh---HHHHHHhCCCcEEEecCCHHHH
Q 047379 51 KTHESINNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNC----PPLRKSE---IEYYAMLAKVGVHHYNGNNVDL 123 (154)
Q Consensus 51 ~~~~kil~lLglA~rAGklv~G~~~VlkaIk~gkakLVIlA~Da----s~~~k~k---i~~~c~~~~Vpvi~~~~tkeEL 123 (154)
++.++++.. +++..|+.+.|.++|++|+..|.+..++|..|. .+...++ +...++.+|..+.. +.+..+-
T Consensus 23 ~ll~~f~~~--i~~d~g~~~yG~~eV~~Ale~GAVetLLI~d~l~r~~d~~~~~~~~el~e~~~~~G~~V~i-vs~~~~~ 99 (124)
T 1x52_A 23 KALDDFYKM--LQHEPDRAFYGLKQVEKANEAMAIDTLLISDELFRHQDVATRSRYVRLVDSVKENAGTVRI-FSSLHVS 99 (124)
T ss_dssp HHHHHHHHH--HHSCGGGEEESHHHHHHHHHTTCEEEEEEEHHHHTCSSHHHHHHHHHHHHHHHHTTCEEEE-ECSSSHH
T ss_pred HHHHHHHHH--HhcCCCcEEECHHHHHHHHHcCCccEEEechhhhcCCChHHHHHHHHHHHHHHHcCCEEEE-ECCCCcc
Confidence 355555443 345669999999999999999999999999873 1112222 56777888999884 6776666
Q ss_pred HhhhCCcccEEEEEEe
Q 047379 124 GTACGKYFRVSCLSII 139 (154)
Q Consensus 124 G~a~Gk~~~vsvvaI~ 139 (154)
|.-+ +.+.- +.||+
T Consensus 100 G~qL-~~~gG-IaAiL 113 (124)
T 1x52_A 100 GEQL-SQLTG-VAAIL 113 (124)
T ss_dssp HHHH-HTTTT-EEEEE
T ss_pred HHHH-hcCCC-EEEEE
Confidence 6666 44443 56765
No 38
>3j15_A Protein pelota; ribosome recycling, ribosome, archaea, translation-transport complex; HET: ADP; 6.60A {Pyrococcus furiosus}
Probab=93.67 E-value=0.093 Score=44.63 Aligned_cols=92 Identities=12% Similarity=0.103 Sum_probs=63.7
Q ss_pred HHHHHhhhhhhhhhhh------hhhHHHHHHHHHHHHHHhCCceecHHHHHHHHhcCCceEEEEeCCCC----hhhhhhH
Q 047379 33 VFFGATKQSKMVTSKK------TKKTHESINNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCP----PLRKSEI 102 (154)
Q Consensus 33 ~~~~a~~~~~~~~~~k------~~~~~~kil~lLglA~rAGklv~G~~~VlkaIk~gkakLVIlA~Das----~~~k~ki 102 (154)
=+..++++......++ ..++.++++..| ++..|+.+.|.++|++|+..|-+.-++|..|.- ++....+
T Consensus 241 gl~Evl~~~~v~~~l~~~k~~~E~~lle~f~~~l--~~d~g~a~yG~~eV~~Ale~GAVetLLV~d~l~r~~~~~~~~~l 318 (357)
T 3j15_A 241 GIYEVIKRGVVDRVYQENRVAKEVQLVEKVLENI--ARNNGLVAYGLKEVEEAVNYGAVETLLVLDELLKGELREKVEEL 318 (357)
T ss_dssp HHHHHHHTCTHHHHHHHHHHHHHHHHHHHHHHHH--HHSTTTEEESTHHHHHHHHHTCEEEEEEEHHHHTSSCCHHHHHH
T ss_pred hHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHH--hcCCCcEEeCHHHHHHHHHhCCCcEEEEecccccccchHHHHHH
Confidence 4666666643332222 445666666665 346799999999999999999999999986643 3355777
Q ss_pred HHHHHhCCCcEEEecCCH----HHHHhhhC
Q 047379 103 EYYAMLAKVGVHHYNGNN----VDLGTACG 128 (154)
Q Consensus 103 ~~~c~~~~Vpvi~~~~tk----eELG~a~G 128 (154)
...++..|..+.. +.+. ++| +.+|
T Consensus 319 ~e~~~~~G~~v~i-vs~~~e~G~qL-~~lg 346 (357)
T 3j15_A 319 MDAVRYSRGEVVV-VSSEHEGGEKL-KALG 346 (357)
T ss_dssp HHHHHHTTCEEEE-ECSSSTTHHHH-HHHC
T ss_pred HHHHHHcCCEEEE-ECCCCCcchhh-hcCC
Confidence 7888889988884 5544 455 4444
No 39
>1ipa_A RRMH, RNA 2'-O-ribose methyltransferase; DEEP trefoil knot, rossmann fold, EL30-like fold, riken structural genomics/proteomics initiative; 2.40A {Thermus thermophilus} SCOP: c.116.1.1 d.79.3.3
Probab=92.51 E-value=0.23 Score=40.61 Aligned_cols=73 Identities=5% Similarity=-0.032 Sum_probs=50.8
Q ss_pred hC-CceecHHHHHHHHhcC-CceEEEEeCCCChhhhhhHHHHHHhCC-CcEEEecCCHHHHHhhhCCcccEEEEEEeC
Q 047379 66 SG-KYTLGYKTVLRSLRTS-KGKLIILSNNCPPLRKSEIEYYAMLAK-VGVHHYNGNNVDLGTACGKYFRVSCLSIID 140 (154)
Q Consensus 66 AG-klv~G~~~VlkaIk~g-kakLVIlA~Das~~~k~ki~~~c~~~~-Vpvi~~~~tkeELG~a~Gk~~~vsvvaI~D 140 (154)
.| -++.|.+.|.++++.+ .+.-|+++.+..+....++...+...+ +|+. .-+.++|-++.+....-.++|+..
T Consensus 26 ~g~f~veG~~~v~eal~~~~~i~~l~~~~~~~~~~~~~l~~~~~~~~~~~v~--~v~~~~l~~ls~~~~~qGv~a~~~ 101 (274)
T 1ipa_A 26 QRRFLIEGAREIERALQAGIELEQALVWEGGLNPEEQQVYAALGRVGRLALL--EVSEAVLKKLSVRDNPAGLIALAR 101 (274)
T ss_dssp HTEEEEESHHHHHHHHHTTCCEEEEEEETTCCCHHHHHHHHCC-----CEEE--EECHHHHHHHCCSSSCCSEEEEEE
T ss_pred cCeEEEEeHHHHHHHHhCCCCeEEEEEEcCcccchHHHHHHHHHhcCCccEE--EeCHHHHHHHhCCCCCCeEEEEEe
Confidence 44 5678999999999987 578888888765432345555566678 9986 478999999998654445677764
No 40
>2vgn_A DOM34; translation termination factor, protein biosynthesis, translation regulation, cell division, mRNA degradation; 2.5A {Saccharomyces cerevisiae} SCOP: b.38.4.1 c.55.4.2 d.79.3.2 PDB: 2vgm_A 3izq_0 3j16_A*
Probab=92.44 E-value=0.61 Score=39.93 Aligned_cols=102 Identities=10% Similarity=-0.028 Sum_probs=66.1
Q ss_pred HHHHHhhhhhhhhhhh------hhhHHHHHHHHHHHHHHhCCceecHHHHHHHHhcCCceEEEEeCCCC----hhh---h
Q 047379 33 VFFGATKQSKMVTSKK------TKKTHESINNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCP----PLR---K 99 (154)
Q Consensus 33 ~~~~a~~~~~~~~~~k------~~~~~~kil~lLglA~rAGklv~G~~~VlkaIk~gkakLVIlA~Das----~~~---k 99 (154)
=+..++++.......+ +.++.++++..| ++..|+.+.|.++|++|+..|.+..++|..|.- +.. .
T Consensus 258 gl~Evl~~~~v~~~L~d~k~~~E~~~l~~f~~~l--~~d~~~a~yG~~eV~~Ale~GAVetLLV~d~l~r~~d~~~r~~v 335 (386)
T 2vgn_A 258 GINEVLKNPLYASKLQDTKYSKEIMVMDEFLLHL--NKDDDKAWYGEKEVVKAAEYGAISYLLLTDKVLHSDNIAQREEY 335 (386)
T ss_dssp HHHHHHHCGGGHHHHHHHHTHHHHHHHHHHHHHH--TTTCSSEEESHHHHHHHHHTTCEEEEEEETTGGGSSCHHHHHHH
T ss_pred cHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCCcEEeCHHHHHHHHHcCCcEEEEEechhhcCCCchhhhHH
Confidence 3455555543333332 333444444332 355699999999999999999999999999852 122 3
Q ss_pred hhHHHHHHhCCCcEEEecCCHHHHHhhhCCcccEEEEEEe
Q 047379 100 SEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSII 139 (154)
Q Consensus 100 ~ki~~~c~~~~Vpvi~~~~tkeELG~a~Gk~~~vsvvaI~ 139 (154)
..+...++..|..+.. +.+.-+-|.-+ +...- +.||+
T Consensus 336 ~~L~e~v~~~Gg~V~i-vs~~~e~G~qL-~~lgG-IAAiL 372 (386)
T 2vgn_A 336 LKLMDSVESNGGKALV-LSTLHSLGEEL-DQLTG-IACIL 372 (386)
T ss_dssp HHHHHHHHHTTCEEEE-ECTTSHHHHHH-HHTTT-EEEEE
T ss_pred HHHHHHHHHcCCEEEE-ECCCCcchhhH-hccCc-EEEEE
Confidence 5556667789999984 77776666555 33332 46665
No 41
>2xw6_A MGS, methylglyoxal synthase; lyase; 1.08A {Thermus SP} PDB: 2x8w_A 1wo8_A
Probab=91.63 E-value=0.2 Score=37.37 Aligned_cols=57 Identities=7% Similarity=-0.111 Sum_probs=43.4
Q ss_pred ecHHHHHHHHhcCCceEEEEeCC--CC---hhhhhhHHHHHHhCCCcEEEecCCHHHHHhhh
Q 047379 71 LGYKTVLRSLRTSKGKLIILSNN--CP---PLRKSEIEYYAMLAKVGVHHYNGNNVDLGTAC 127 (154)
Q Consensus 71 ~G~~~VlkaIk~gkakLVIlA~D--as---~~~k~ki~~~c~~~~Vpvi~~~~tkeELG~a~ 127 (154)
-|..++...|++|++.+||-..| .. ..-...|+..|-.++|||.+...+-+.+=.++
T Consensus 61 eG~p~I~d~I~~geIdlVInt~~pl~~~~h~~D~~~IrR~A~~~~IP~~T~latA~a~v~al 122 (134)
T 2xw6_A 61 GGDQQMGARVAEGRILAVIFFRDPLTAQPHEPDVQALLRVCDVHGVPLATNPMAAEALIPWL 122 (134)
T ss_dssp THHHHHHHHHHTTCEEEEEEECCTTTCCTTSCCSHHHHHHHHHHTCCEECSHHHHHHHHHHH
T ss_pred CCcchHHHHHHCCCccEEEEccCcccCCCccchHHHHHHHHHHcCCCeEcCHHHHHHHHHHH
Confidence 47789999999999999999998 32 23458899999999999996433444444333
No 42
>3mca_B Protein DOM34, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=91.61 E-value=0.44 Score=40.94 Aligned_cols=86 Identities=9% Similarity=0.009 Sum_probs=60.9
Q ss_pred hhhHHHHHHHHHHHHHHhCCceecHHHHHHHHhcCCceEEEEeCCCC----hhhhh---hHHHHHHhCCCcEEEecCCHH
Q 047379 49 TKKTHESINNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCP----PLRKS---EIEYYAMLAKVGVHHYNGNNV 121 (154)
Q Consensus 49 ~~~~~~kil~lLglA~rAGklv~G~~~VlkaIk~gkakLVIlA~Das----~~~k~---ki~~~c~~~~Vpvi~~~~tke 121 (154)
..++.++++..| +...|+.+.|.++|++|+..|-+.-++|..+.- +..++ .+...++.+|-.+.. +.+.-
T Consensus 274 E~~lle~f~~~l--~~d~g~a~YG~~eV~~Ale~GAVetLLI~d~l~r~~d~~~r~~~~~L~e~~~~~Gg~V~i-vs~~~ 350 (390)
T 3mca_B 274 EIRVLNKFYDVM--NEDDRKAWYGPNHVLKAFELGAIGELLISDSLFRSSDIATRKKWVSLVEGVKEINCPVYI-FSSLH 350 (390)
T ss_dssp HHHHHHHHHHHH--HHCTTSEEESHHHHHHHHHTTCBSSCEEEETTCCCSCHHHHHHHHHHHHHHHHTTCCEEE-ECTTS
T ss_pred HHHHHHHHHHHH--hcCCCcEEECHHHHHHHHHcCCCeEEEEecccccCCChhHHHHHHHHHHHHHhcCCEEEE-ECCCC
Confidence 344667777766 346799999999999999999999999997753 22233 455667888988884 66665
Q ss_pred HHHhhhCCcccEEEEEEe
Q 047379 122 DLGTACGKYFRVSCLSII 139 (154)
Q Consensus 122 ELG~a~Gk~~~vsvvaI~ 139 (154)
+-|.-+ +...- +.||+
T Consensus 351 ~~G~qL-~~lgG-iaAiL 366 (390)
T 3mca_B 351 ESGKQL-DLLSG-IAAIL 366 (390)
T ss_dssp HHHHHH-HHTTS-EEEEB
T ss_pred Cchhhh-hcCCc-EEEEE
Confidence 555555 33333 56775
No 43
>3agj_B Protein pelota homolog; GTP binding, translation-hydrolase complex; HET: GTP; 2.30A {Aeropyrum pernix}
Probab=91.57 E-value=0.37 Score=40.84 Aligned_cols=86 Identities=12% Similarity=0.016 Sum_probs=60.8
Q ss_pred hhhHHHHHHHHHHHHHHhCCceecHHHHHHHHhcCCceEEEEeCCCCh----hh---hhhHHHHHHhCCCcEEEecCCHH
Q 047379 49 TKKTHESINNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPP----LR---KSEIEYYAMLAKVGVHHYNGNNV 121 (154)
Q Consensus 49 ~~~~~~kil~lLglA~rAGklv~G~~~VlkaIk~gkakLVIlA~Das~----~~---k~ki~~~c~~~~Vpvi~~~~tke 121 (154)
++++.++++..| ++..|+.+.|.++|++|+..|.+.-++|+.|... .. ...+...++..|..+.. +.+..
T Consensus 255 e~~ll~~f~~~l--~~d~g~a~yG~~eV~~Al~~GAVetLLV~d~l~r~~d~~~r~~~~~L~~~a~~~Gg~V~i-vs~~~ 331 (358)
T 3agj_B 255 AEGVLEEFLRRI--AKSRDTVAYTPGEVLAVARMGAVDTVLLVDTLLHSPDDAVREAVDEALRLVESMGGRVII-IPGDS 331 (358)
T ss_dssp HHHHHHHHHHHH--HHCGGGEEESHHHHHHHHHHTCEEEEEEEHHHHTCSSHHHHHHHHHHHHHHHHTTCEEEE-ECSSS
T ss_pred HHHHHHHHHHHH--hcCCCcEEECHHHHHHHHHhCCceEEEEecccccCCChhhHHHHHHHHHHHHHcCCEEEE-ECCCC
Confidence 344556665544 4556999999999999999999999999877421 12 45666777789999984 77776
Q ss_pred HHHhhhCCcccEEEEEEe
Q 047379 122 DLGTACGKYFRVSCLSII 139 (154)
Q Consensus 122 ELG~a~Gk~~~vsvvaI~ 139 (154)
+-|.-+ +...- +.||+
T Consensus 332 ~~G~qL-~~~gG-IaAiL 347 (358)
T 3agj_B 332 PAGERL-VSFGG-VIALL 347 (358)
T ss_dssp HHHHHH-GGGTT-EEEEE
T ss_pred cchhhh-hcCCc-EEEEE
Confidence 777555 44343 56665
No 44
>3e20_C Eukaryotic peptide chain release factor subunit 1; SUP35, SUP45, translation termination, peptide release, GTP- nucleotide-binding; 3.50A {Schizosaccharomyces pombe}
Probab=90.61 E-value=0.6 Score=40.83 Aligned_cols=87 Identities=14% Similarity=0.136 Sum_probs=62.1
Q ss_pred hhhHHHHHHHHHHHHHHhCCceecHHHHHHHHhcCCceEEEEeCCCCh--------------------------------
Q 047379 49 TKKTHESINNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPP-------------------------------- 96 (154)
Q Consensus 49 ~~~~~~kil~lLglA~rAGklv~G~~~VlkaIk~gkakLVIlA~Das~-------------------------------- 96 (154)
+.++.++++..| ++..|+.+.|.++|++|+..|.+.-++|..|..-
T Consensus 288 E~~lle~f~~~l--~~d~g~a~YG~~eV~~Ale~GAVetLLIsD~l~~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (441)
T 3e20_C 288 EKKLIQRFFDEI--SLDSGKYCFGVVDTMNALQEGAVETLLCFADLDMIRYEFKNSEGNPVITYMTKEQEEKDSTNSFLL 365 (441)
T ss_dssp HHHHHHHHHHHH--HTTCSCCCCSHHHHHHHHHSSCCSEEEEETTCCCEEC----------CCEECSCTTTCCC------
T ss_pred HHHHHHHHHHHH--hcCCCcEEECHHHHHHHHHhCCccEEEEecccccceeEEECCCCceEEEecCcccccccccccccc
Confidence 455667777775 3567999999999999999999999999987740
Q ss_pred --------------hhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCcccEEEEEEe
Q 047379 97 --------------LRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSII 139 (154)
Q Consensus 97 --------------~~k~ki~~~c~~~~Vpvi~~~~tkeELG~a~Gk~~~vsvvaI~ 139 (154)
+..+.+...++.+|..+. ++.+.-+-|.-+=+.+.- +.||+
T Consensus 366 c~~~g~~~~~~e~~~~ve~l~e~a~~~G~~v~-~vs~~~~eG~ql~~~fgG-IaaiL 420 (441)
T 3e20_C 366 DKDTGAEMELVSSMLLSEWLAEHYKDYGANLE-FVSDRSQEGMQFVKGFGG-IGAVM 420 (441)
T ss_dssp -----------CCEEHHHHHHHHGGGGSCCEE-EECTTSHHHHHHHHTSTT-EEEEC
T ss_pred CcccCccceecchhhHHHHHHHHHHHcCCEEE-EECCCCHHHHHHHHcCCc-EEEEE
Confidence 112346678888898888 477877777655222222 45664
No 45
>1b93_A Protein (methylglyoxal synthase); glycolytic bypass, lyase; 1.90A {Escherichia coli} SCOP: c.24.1.2 PDB: 1egh_A 1ik4_A* 1s8a_A 1s89_A
Probab=90.29 E-value=0.52 Score=35.87 Aligned_cols=59 Identities=12% Similarity=0.007 Sum_probs=44.3
Q ss_pred Ccee-cHHHHHHHHhcCCceEEEEeCC--C-Ch--hhhhhHHHHHHhCCCcEEEecCCHHHHHhh
Q 047379 68 KYTL-GYKTVLRSLRTSKGKLIILSNN--C-PP--LRKSEIEYYAMLAKVGVHHYNGNNVDLGTA 126 (154)
Q Consensus 68 klv~-G~~~VlkaIk~gkakLVIlA~D--a-s~--~~k~ki~~~c~~~~Vpvi~~~~tkeELG~a 126 (154)
++.. |..++...|++|++.+||-..| . .+ .-...|+..|-.+||||.+-..+-+.+=.+
T Consensus 65 k~~eGG~p~I~d~I~~geIdlVInt~~pl~~~~h~~D~~~IrR~A~~~~IP~~T~latA~a~v~a 129 (152)
T 1b93_A 65 SGPMGGDQQVGALISEGKIDVLIFFWDPLNAVPHDPDVKALLRLATVWNIPVATNVATADFIIQS 129 (152)
T ss_dssp CGGGTHHHHHHHHHHTTCCCEEEEECCTTSCCTTHHHHHHHHHHHHHTTCCEESSHHHHHHHHTS
T ss_pred ecCCCCCchHHHHHHCCCccEEEEcCCcccCCcccccHHHHHHHHHHcCCCEEeCHHHHHHHHHH
Confidence 3344 7889999999999999999998 3 22 345789999999999998633344444443
No 46
>3agk_A Peptide chain release factor subunit 1; translation; 2.10A {Aeropyrum pernix}
Probab=89.54 E-value=0.58 Score=39.50 Aligned_cols=69 Identities=16% Similarity=0.075 Sum_probs=52.5
Q ss_pred hHHHHHHHHHHHHHHhCCceecHHHHHHHHhcCCceEEEEeCCCChhhhhhHHHHHHhCCCcEEEecCCHHHHH
Q 047379 51 KTHESINNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLG 124 (154)
Q Consensus 51 ~~~~kil~lLglA~rAGklv~G~~~VlkaIk~gkakLVIlA~Das~~~k~ki~~~c~~~~Vpvi~~~~tkeELG 124 (154)
++.++++..+ ++..|+.+.|.++|++|+..|.+..++|..| .+....+...+...|-.++. +.+..+-|
T Consensus 284 ~~l~~f~~~l--~~~~g~a~yG~~eV~~Al~~GaVetLlv~d~--rd~~~~L~e~a~~~G~~V~i-vs~~~~~g 352 (373)
T 3agk_A 284 NAMEEFKLHL--AKGTGMIVYGEKDVEAALEMGAVKTLLIHES--REDLEEWVEKAKSSGAQVIV-VPESLAEA 352 (373)
T ss_dssp HHHHHHHHHH--HTTCCCEEESHHHHHHHHHTTCEEEEEEETT--CTTHHHHHHHHTTTTCEEEE-ECTTSTTH
T ss_pred HHHHHHHHHH--hcCCCcEeeCHHHHHHHHHhCCccEEEEeCC--hhHHHHHHHHHHHcCCEEEE-ECCCCccH
Confidence 3444444333 3446999999999999999999999999998 45677788888889999884 66654444
No 47
>1vmd_A MGS, methylglyoxal synthase; TM1185, structural genomics, JCSG, P structure initiative, PSI, joint center for structural GENO lyase; 2.06A {Thermotoga maritima} SCOP: c.24.1.2
Probab=88.90 E-value=0.63 Score=36.38 Aligned_cols=60 Identities=12% Similarity=0.000 Sum_probs=45.3
Q ss_pred Ccee-cHHHHHHHHhcCCceEEEEeCC--C-Ch--hhhhhHHHHHHhCCCcEEEecCCHHHHHhhh
Q 047379 68 KYTL-GYKTVLRSLRTSKGKLIILSNN--C-PP--LRKSEIEYYAMLAKVGVHHYNGNNVDLGTAC 127 (154)
Q Consensus 68 klv~-G~~~VlkaIk~gkakLVIlA~D--a-s~--~~k~ki~~~c~~~~Vpvi~~~~tkeELG~a~ 127 (154)
++.. |..++...|++|++.+||-..| . .+ .-...|...|-.+||||.+...+-+.+=.++
T Consensus 81 k~~eGG~pqI~d~I~~geIdlVInt~dPl~~~~h~~D~~~IRR~A~~~~IP~~TnlatA~A~v~ai 146 (178)
T 1vmd_A 81 SGPLGGDQQIGAMIAEGKIDVLIFFWDPLEPQAHDVDVKALIRIATVYNIPVAITRSTADFLISSP 146 (178)
T ss_dssp CGGGTHHHHHHHHHHTTSCCEEEEECCSSSCCTTSCCHHHHHHHHHHTTCCEESSHHHHHHHHHSG
T ss_pred ecCCCCCchHHHHHHCCCccEEEEccCccCCCcccccHHHHHHHHHHcCCCEEeCHHHHHHHHHHH
Confidence 3344 7889999999999999999998 3 22 3458899999999999996444555554443
No 48
>1x7o_A Avirb, rRNA methyltransferase; SPOU, C-terminal knot, seMet; 2.37A {Streptomyces viridochromogenes} PDB: 1x7p_A*
Probab=84.76 E-value=2.6 Score=34.46 Aligned_cols=70 Identities=4% Similarity=-0.081 Sum_probs=49.0
Q ss_pred CceecHHHHHHHHhcCC-ceEEEEeCCCChhhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCc-ccEEEEEEeCc
Q 047379 68 KYTLGYKTVLRSLRTSK-GKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKY-FRVSCLSIIDP 141 (154)
Q Consensus 68 klv~G~~~VlkaIk~gk-akLVIlA~Das~~~k~ki~~~c~~~~Vpvi~~~~tkeELG~a~Gk~-~~vsvvaI~D~ 141 (154)
-++.|.+.|.++++.|. +.-|+++.+.... ..+..+.+..++|++ .-+.++|-++.+.. ..-.++|+...
T Consensus 41 f~veG~~~V~eal~~~~~i~~l~~~~~~~~~--~~~~~l~~~~~~~v~--~v~~~~l~~ls~~~~~~qGv~a~~~~ 112 (287)
T 1x7o_A 41 FLVMGVRPISLAVEHGWPVRTLLYDGQRELS--KWARELLRTVRTEQI--AMAPDLLMELGEKNEAPPEVVAVVEM 112 (287)
T ss_dssp EEEESHHHHHHHHHTTCCEEEEEEESSCCCC--HHHHHHHHHSCSEEE--EECHHHHTTSSCSSSCCCSEEEEEEC
T ss_pred EEEEeHHHHHHHHhCCCCeEEEEEecCcccc--hhHHHHHHHcCCcEE--EeCHHHHHHHhCCCCCCCcEEEEEec
Confidence 46789999999999876 7788888776432 123333344458886 47899999999866 44446777643
No 49
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=83.57 E-value=1 Score=33.08 Aligned_cols=42 Identities=14% Similarity=0.080 Sum_probs=35.0
Q ss_pred HHHHHHHhcCCceEEEEeCCCChh---hhhhHHHHHHhCCCcEEE
Q 047379 74 KTVLRSLRTSKGKLIILSNNCPPL---RKSEIEYYAMLAKVGVHH 115 (154)
Q Consensus 74 ~~VlkaIk~gkakLVIlA~Das~~---~k~ki~~~c~~~~Vpvi~ 115 (154)
.++.+.|++|++.+||-..|-... --..|+..|-.++|||++
T Consensus 86 ~~i~d~i~~g~i~lVInt~~~~~~~~~d~~~iRR~Av~~~IP~~T 130 (143)
T 2yvq_A 86 SSIRKLIRDGSIDLVINLPNNNTKFVHDNYVIRRTAVDSGIPLLT 130 (143)
T ss_dssp BCHHHHHHTTSCCEEEECCCCCGGGHHHHHHHHHHHHHTTCCEEC
T ss_pred ccHHHHHHCCCceEEEECCCCCCcCCccHHHHHHHHHHhCCCeEc
Confidence 569999999999999998877422 336789999999999986
No 50
>1dt9_A ERF1, protein (eukaryotic peptide chain release factor subunit 1); tRNA mimicry, protein sythesis, STOP codon recognition, peptidyl-tRNA hydrolysis; 2.70A {Homo sapiens} SCOP: c.55.4.2 d.79.3.2 d.91.1.1 PDB: 3e1y_A* 2ktu_A 2ktv_A 2lgt_A 2hst_A
Probab=81.24 E-value=3.5 Score=35.46 Aligned_cols=45 Identities=22% Similarity=0.377 Sum_probs=35.9
Q ss_pred hhhHHHHHHHHHHHHHHhCCceecHHHHHHHHhcCCceEEEEeCCCC
Q 047379 49 TKKTHESINNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCP 95 (154)
Q Consensus 49 ~~~~~~kil~lLglA~rAGklv~G~~~VlkaIk~gkakLVIlA~Das 95 (154)
++++.++++..| ++..|+.+.|.++|++|+..|.+..+||..|..
T Consensus 283 e~~ll~~f~~~l--~~d~g~a~yG~~eV~~Al~~GaVetLLv~d~l~ 327 (437)
T 1dt9_A 283 EKKLIGRYFDEI--SQDTGKYCFGVEDTLKALEMGAVEILIVYENLD 327 (437)
T ss_dssp HHHHHHHHHHHH--HSSSCCEEESHHHHHHHHHSSCCSEEEEESCCC
T ss_pred HHHHHHHHHHHh--hcCCCcEEecHHHHHHHHHhCCccEEEEecCcc
Confidence 444555665543 455799999999999999999999999998865
No 51
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=80.31 E-value=9.7 Score=31.08 Aligned_cols=67 Identities=12% Similarity=0.029 Sum_probs=55.2
Q ss_pred HHHHHHHhcCCceEEEEeCCCChhhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCcccEEEEEEeCcC
Q 047379 74 KTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPG 142 (154)
Q Consensus 74 ~~VlkaIk~gkakLVIlA~Das~~~k~ki~~~c~~~~Vpvi~~~~tkeELG~a~Gk~~~vsvvaI~D~G 142 (154)
.++.++..-|--.+++++++.++...+.+...|...|..++.-+.|.+||-++.-.... +|+|++.+
T Consensus 133 ~qi~ea~~~GAD~VlLi~a~L~~~~l~~l~~~a~~lGl~~lvevh~~eEl~~A~~~ga~--iIGinnr~ 199 (272)
T 3tsm_A 133 YQVYEARSWGADCILIIMASVDDDLAKELEDTAFALGMDALIEVHDEAEMERALKLSSR--LLGVNNRN 199 (272)
T ss_dssp HHHHHHHHTTCSEEEEETTTSCHHHHHHHHHHHHHTTCEEEEEECSHHHHHHHTTSCCS--EEEEECBC
T ss_pred HHHHHHHHcCCCEEEEcccccCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhcCCC--EEEECCCC
Confidence 36888888888888888999998888999999999998766558899999999866544 58998655
No 52
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}
Probab=77.57 E-value=4.8 Score=28.00 Aligned_cols=56 Identities=20% Similarity=0.054 Sum_probs=43.5
Q ss_pred CCceecHHHHHHHHhcCCceEEEEeCCC-ChhhhhhHHHHHHhCCCcEEEecCCHHHH
Q 047379 67 GKYTLGYKTVLRSLRTSKGKLIILSNNC-PPLRKSEIEYYAMLAKVGVHHYNGNNVDL 123 (154)
Q Consensus 67 Gklv~G~~~VlkaIk~gkakLVIlA~Da-s~~~k~ki~~~c~~~~Vpvi~~~~tkeEL 123 (154)
|--+.|.+...+.+++..+..||+|... +....+++...|...++++.. .++-.++
T Consensus 48 g~pV~g~~~l~~~~~~~~id~viia~~~~~~~~~~~i~~~l~~~gv~v~~-vP~~~~~ 104 (141)
T 3nkl_A 48 GITIYRPKYLERLIKKHCISTVLLAVPSASQVQKKVIIESLAKLHVEVLT-IPNLDDL 104 (141)
T ss_dssp TEEEECGGGHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHTTTCEEEE-CCCHHHH
T ss_pred CeEEECHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHHHHcCCeEEE-CCCHHHH
Confidence 3345666777788888889999999754 446778899999999999984 8887664
No 53
>2ohw_A YUEI protein; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; 1.40A {Bacillus subtilis} SCOP: d.79.8.1
Probab=77.09 E-value=14 Score=27.23 Aligned_cols=45 Identities=13% Similarity=0.031 Sum_probs=40.5
Q ss_pred HHHHHHHhcCCceEEEEeCCCChhhhhhHHHHHHhCCCcEEEecCC
Q 047379 74 KTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGN 119 (154)
Q Consensus 74 ~~VlkaIk~gkakLVIlA~Das~~~k~ki~~~c~~~~Vpvi~~~~t 119 (154)
.++++.+++.....|+|..+.+.+....+..+|..+|||+-. +.+
T Consensus 53 ~~~~~~l~~~~~~~l~ing~l~~~~~~~YiklA~~~~i~fTi-V~~ 97 (133)
T 2ohw_A 53 KEAEHELKNSHNVTLLINGELQYQSYSSYIQMASRYGVPFKI-VSD 97 (133)
T ss_dssp HHHHHHHHTCSSEEEEEETTSCHHHHHHHHHHHHHTTCCEEE-ECC
T ss_pred HHHHHHHhhCCCcEEEEcCCCCHHHHHHHHHHHHHcCCCeEE-ecC
Confidence 456779999999999999999999999999999999999985 655
No 54
>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...
Probab=75.96 E-value=7 Score=32.07 Aligned_cols=83 Identities=11% Similarity=0.053 Sum_probs=65.2
Q ss_pred HHHHHHHh-------CCceecHHHHHHHHhcCCceEEEEeCCCChhhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCcc
Q 047379 59 RLALVMKS-------GKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYF 131 (154)
Q Consensus 59 lLglA~rA-------Gklv~G~~~VlkaIk~gkakLVIlA~Das~~~k~ki~~~c~~~~Vpvi~~~~tkeELG~a~Gk~~ 131 (154)
.|..++++ ...++-.-|+.++-.-|--.++++++-.++...+.+..+|...|..++.-+.|.+||-+++.-..
T Consensus 95 ~L~~vr~~v~lPvLrKDFiid~yQI~eAr~~GADaILLI~a~L~~~~l~~l~~~A~~lGl~~LvEVh~~~El~rAl~~~a 174 (258)
T 4a29_A 95 TLRKIASSVSIPILMSDFIVKESQIDDAYNLGADTVLLIVKILTERELESLLEYARSYGMEPLILINDENDLDIALRIGA 174 (258)
T ss_dssp HHHHHHTTCSSCEEEESCCCSHHHHHHHHHHTCSEEEEEGGGSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHTTC
T ss_pred HHHHHHHhcCCCEeeccccccHHHHHHHHHcCCCeeehHHhhcCHHHHHHHHHHHHHHhHHHHHhcchHHHHHHHhcCCC
Confidence 45555555 34567778899998888877888888899999999999999999665545899999999987664
Q ss_pred cEEEEEEeCcCc
Q 047379 132 RVSCLSIIDPGD 143 (154)
Q Consensus 132 ~vsvvaI~D~Gf 143 (154)
. +|||.+.++
T Consensus 175 ~--iIGINNRnL 184 (258)
T 4a29_A 175 R--FIGIMSRDF 184 (258)
T ss_dssp S--EEEECSBCT
T ss_pred c--EEEEeCCCc
Confidence 4 599987664
No 55
>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A
Probab=67.08 E-value=28 Score=27.93 Aligned_cols=74 Identities=12% Similarity=-0.048 Sum_probs=57.6
Q ss_pred CCceecHHHHHHHHhcCCceEEEEeCCCChhhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCC-cccEEEEEEeCcCc
Q 047379 67 GKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGK-YFRVSCLSIIDPGD 143 (154)
Q Consensus 67 Gklv~G~~~VlkaIk~gkakLVIlA~Das~~~k~ki~~~c~~~~Vpvi~~~~tkeELG~a~Gk-~~~vsvvaI~D~Gf 143 (154)
.-++-++ |+.++..-|---.+++++-.++...+.+...|+..|..+..-+.|.+|+-++.-. ... +|||+..++
T Consensus 108 Dfi~~~~-qi~ea~~~GAD~ilLi~a~l~~~~l~~l~~~a~~lGl~~lvEv~~~eE~~~A~~l~g~~--iIGinnr~l 182 (251)
T 1i4n_A 108 DFYIDTV-QVKLASSVGADAILIIARILTAEQIKEIYEAAEELGMDSLVEVHSREDLEKVFSVIRPK--IIGINTRDL 182 (251)
T ss_dssp CCCCSTH-HHHHHHHTTCSEEEEEGGGSCHHHHHHHHHHHHTTTCEEEEEECSHHHHHHHHTTCCCS--EEEEECBCT
T ss_pred eCCCCHH-HHHHHHHcCCCEEEEecccCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhcCCCC--EEEEeCccc
Confidence 3566666 6888888887666777777787888899999999997766558999999999877 544 599988764
No 56
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=65.98 E-value=19 Score=29.07 Aligned_cols=69 Identities=3% Similarity=-0.102 Sum_probs=52.1
Q ss_pred eecHHHHHHHHhcCCceEEEEeCCCChhhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCcccEEEEEEeC
Q 047379 70 TLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIID 140 (154)
Q Consensus 70 v~G~~~VlkaIk~gkakLVIlA~Das~~~k~ki~~~c~~~~Vpvi~~~~tkeELG~a~Gk~~~vsvvaI~D 140 (154)
.+-..++..+..-|--.++++..|.++.....+...|...|++++.-+.|.+|+-++.-. .+..++|+.
T Consensus 122 iid~~qv~~A~~~GAD~VlLi~a~l~~~~l~~l~~~a~~lGl~~lvev~t~ee~~~A~~~--Gad~IGv~~ 190 (272)
T 3qja_A 122 VVQPYQIHEARAHGADMLLLIVAALEQSVLVSMLDRTESLGMTALVEVHTEQEADRALKA--GAKVIGVNA 190 (272)
T ss_dssp CCSHHHHHHHHHTTCSEEEEEGGGSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH--TCSEEEEES
T ss_pred ccCHHHHHHHHHcCCCEEEEecccCCHHHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHC--CCCEEEECC
Confidence 344447888888886666666889998888889999999998876557899999887633 244688874
No 57
>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0
Probab=61.97 E-value=10 Score=25.32 Aligned_cols=51 Identities=10% Similarity=-0.005 Sum_probs=35.5
Q ss_pred HhcCCceEEEEeCCCChhhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCc
Q 047379 80 LRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKY 130 (154)
Q Consensus 80 Ik~gkakLVIlA~Das~~~k~ki~~~c~~~~Vpvi~~~~tkeELG~a~Gk~ 130 (154)
.....+.+|.+..|.++...+.+..+.+.+++++-.+.....+|.+..|..
T Consensus 63 ~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~ 113 (145)
T 3erw_A 63 HPSDSVKLVTVNLVNSEQNQQVVEDFIKANKLTFPIVLDSKGELMKEYHII 113 (145)
T ss_dssp CCCSSEEEEEEECGGGSSCHHHHHHHHHHTTCCSCEEECSSSHHHHHTTCC
T ss_pred cCCCCEEEEEEEccCCcCCHHHHHHHHHHcCCceeEEEcCchhHHHhcCcC
Confidence 333458888888887666777777788888766554345566888888854
No 58
>1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A
Probab=61.21 E-value=26 Score=30.61 Aligned_cols=73 Identities=10% Similarity=-0.025 Sum_probs=57.3
Q ss_pred CceecHHHHHHHHhcCCceEEEEeCCCChhhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCcccEEEEEEeCcCc
Q 047379 68 KYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGD 143 (154)
Q Consensus 68 klv~G~~~VlkaIk~gkakLVIlA~Das~~~k~ki~~~c~~~~Vpvi~~~~tkeELG~a~Gk~~~vsvvaI~D~Gf 143 (154)
-++-.+ |+.++..-|---++++++-.++...+.+..+|...|..+..-+.|.+||-+|+-.... +|||++.++
T Consensus 116 FI~d~~-Qi~ea~~~GAD~ILLi~a~l~~~~l~~l~~~a~~lgm~~LvEvh~~eE~~~A~~lga~--iIGinnr~L 188 (452)
T 1pii_A 116 FIIDPY-QIYLARYYQADACLLMLSVLDDDQYRQLAAVAHSLEMGVLTEVSNEEEQERAIALGAK--VVGINNRDL 188 (452)
T ss_dssp CCCSHH-HHHHHHHTTCSEEEEETTTCCHHHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHTTCS--EEEEESEET
T ss_pred ccCCHH-HHHHHHHcCCCEEEEEcccCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHCCCC--EEEEeCCCC
Confidence 455555 6777777787777888888888888999999999997766558999999998766544 499998774
No 59
>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}
Probab=57.89 E-value=43 Score=23.09 Aligned_cols=48 Identities=6% Similarity=0.028 Sum_probs=34.5
Q ss_pred CCceEEEEeCCCChhhhhhHHHHHHhCCCcEEEecCCHH---HHHhhhCCc
Q 047379 83 SKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNV---DLGTACGKY 130 (154)
Q Consensus 83 gkakLVIlA~Das~~~k~ki~~~c~~~~Vpvi~~~~tke---ELG~a~Gk~ 130 (154)
..+.+|.|+.|-..++.+.+..+++.+++++..+.++.+ ++.+..|..
T Consensus 63 ~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~ 113 (171)
T 2rli_A 63 PPVQPVFITVDPERDDVEAMARYVQDFHPRLLGLTGSTKQVAQASHSYRVY 113 (171)
T ss_dssp CCEEEEEEESCSTTCCHHHHHHHHHTTCTTCCEEECCHHHHHHHHHHSCCC
T ss_pred CceEEEEEEECCCCCCHHHHHHHHHHcCCCeEEEeCCHHHHHHHHHHhCeE
Confidence 468889999886656777888888988877654344544 577777754
No 60
>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A
Probab=56.68 E-value=22 Score=24.65 Aligned_cols=43 Identities=9% Similarity=0.067 Sum_probs=27.2
Q ss_pred CceEEEEeCCCChhhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCc
Q 047379 84 KGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKY 130 (154)
Q Consensus 84 kakLVIlA~Das~~~k~ki~~~c~~~~Vpvi~~~~tkeELG~a~Gk~ 130 (154)
.+.+|.|+.| ..+.+..+++.+++++........++.+..|..
T Consensus 69 ~~~vv~vs~d----~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~ 111 (163)
T 3gkn_A 69 GAKILGVSRD----SVKSHDNFCAKQGFAFPLVSDGDEALCRAFDVI 111 (163)
T ss_dssp TCEEEEEESS----CHHHHHHHHHHHCCSSCEEECTTCHHHHHTTCE
T ss_pred CCEEEEEeCC----CHHHHHHHHHHhCCCceEEECCcHHHHHHhCCc
Confidence 3778899988 233444555666554432234566899999864
No 61
>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1
Probab=55.10 E-value=6.5 Score=32.07 Aligned_cols=59 Identities=15% Similarity=-0.048 Sum_probs=40.7
Q ss_pred CceEEEEeCCCChhhhhhHHHHHHhC---CCcEEEecCCHHHHHh-----hhCCcccEEEEEEeCcCchHH
Q 047379 84 KGKLIILSNNCPPLRKSEIEYYAMLA---KVGVHHYNGNNVDLGT-----ACGKYFRVSCLSIIDPGDSDI 146 (154)
Q Consensus 84 kakLVIlA~Das~~~k~ki~~~c~~~---~Vpvi~~~~tkeELG~-----a~Gk~~~vsvvaI~D~GfA~~ 146 (154)
.+.+||.|.| .+..-..+...|+.. +||+.. + +.-++.. .+-+.... +|||+..|-+..
T Consensus 106 ~adlViaat~-d~~~n~~I~~~Ar~~f~~~i~VNv-v-d~pel~~f~~Pa~~~~g~~l-~IaIST~Gksp~ 172 (274)
T 1kyq_A 106 AWYIIMTCIP-DHPESARIYHLCKERFGKQQLVNV-A-DKPDLCDFYFGANLEIGDRL-QILISTNGLSPR 172 (274)
T ss_dssp CEEEEEECCS-CHHHHHHHHHHHHHHHCTTSEEEE-T-TCGGGBSEECCEEEEETTTE-EEEEEESSSCHH
T ss_pred CeEEEEEcCC-ChHHHHHHHHHHHHhcCCCcEEEE-C-CCcccCeeEeeeEEEeCCCE-EEEEECCCCCcH
Confidence 5789999988 555678899999999 999974 4 4455655 33333225 689987764433
No 62
>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A
Probab=54.64 E-value=48 Score=22.61 Aligned_cols=47 Identities=15% Similarity=0.090 Sum_probs=34.5
Q ss_pred CceEEEEeCCCChhhhhhHHHHHHhCCCcEEEecCCHH---HHHhhhCCc
Q 047379 84 KGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNV---DLGTACGKY 130 (154)
Q Consensus 84 kakLVIlA~Das~~~k~ki~~~c~~~~Vpvi~~~~tke---ELG~a~Gk~ 130 (154)
.+.+|.|+.|...++.+.+..+++.+++++..+.++.+ ++.+..|..
T Consensus 61 ~~~vv~vs~d~~~d~~~~~~~~~~~~~~~~~~l~~~~d~~~~~~~~~~v~ 110 (164)
T 2ggt_A 61 DLTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVDQVARAYRVY 110 (164)
T ss_dssp CEEEEEEESCTTTCCHHHHHHHHHTTCSSCEEEECCHHHHHHHHHTTTCC
T ss_pred cEEEEEEEeCCCCCCHHHHHHHHHHcCCCeEEEeCCHHHHHHHHHhcCeE
Confidence 58899999987767778888899998887764334443 577777753
No 63
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=53.26 E-value=46 Score=24.50 Aligned_cols=52 Identities=15% Similarity=0.289 Sum_probs=40.0
Q ss_pred HHHHHHHhcCCceEEEEeCCCChhhh-hhHHHHHHhCCCcEEEecCCHHHHHhhh
Q 047379 74 KTVLRSLRTSKGKLIILSNNCPPLRK-SEIEYYAMLAKVGVHHYNGNNVDLGTAC 127 (154)
Q Consensus 74 ~~VlkaIk~gkakLVIlA~Das~~~k-~ki~~~c~~~~Vpvi~~~~tkeELG~a~ 127 (154)
+++...|++.-+++|++-+|-++.-+ +.++.+ +..+|.+.+ +.+++..-.-+
T Consensus 16 keivreikrqgvrvvllysdqdekrrrerleef-ekqgvdvrt-vedkedfreni 68 (162)
T 2l82_A 16 KEIVREIKRQGVRVVLLYSDQDEKRRRERLEEF-EKQGVDVRT-VEDKEDFRENI 68 (162)
T ss_dssp HHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHH-HTTTCEEEE-CCSHHHHHHHH
T ss_pred HHHHHHHHhCCeEEEEEecCchHHHHHHHHHHH-HHcCCceee-eccHHHHHHHH
Confidence 45667788888999999999999654 555544 667999996 89998876544
No 64
>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}
Probab=50.76 E-value=52 Score=22.15 Aligned_cols=45 Identities=9% Similarity=0.064 Sum_probs=29.4
Q ss_pred CceEEEEeCCCChhhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCc
Q 047379 84 KGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKY 130 (154)
Q Consensus 84 kakLVIlA~Das~~~k~ki~~~c~~~~Vpvi~~~~tkeELG~a~Gk~ 130 (154)
.+.+|.+..|. +..+.+..+.+.+++++-.......++.+..|..
T Consensus 61 ~~~vv~v~~~~--~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~ 105 (153)
T 2l5o_A 61 NFQVLAVAQPI--DPIESVRQYVKDYGLPFTVMYDADKAVGQAFGTQ 105 (153)
T ss_dssp TEEEEEEECTT--SCHHHHHHHHHHTTCCSEEEECSSCHHHHHHTCC
T ss_pred CeEEEEEecCC--CCHHHHHHHHHHcCCCceEEcCchHHHHHHcCCC
Confidence 36666666553 3456677778888876543345567888888854
No 65
>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}
Probab=50.21 E-value=35 Score=24.62 Aligned_cols=42 Identities=5% Similarity=-0.072 Sum_probs=27.5
Q ss_pred CCc-eEEEEeCCCChhhhhhHHHHHHhCCCc----EEEecCCHHHHHhhhCCc
Q 047379 83 SKG-KLIILSNNCPPLRKSEIEYYAMLAKVG----VHHYNGNNVDLGTACGKY 130 (154)
Q Consensus 83 gka-kLVIlA~Das~~~k~ki~~~c~~~~Vp----vi~~~~tkeELG~a~Gk~ 130 (154)
..+ .+|-|+.|.. ..+..+++.+++| ++ .....+++++.|..
T Consensus 65 ~gv~~vv~Is~d~~----~~~~~~~~~~~~~~~fp~l--~D~~~~~~~~~gv~ 111 (167)
T 2wfc_A 65 KGVDIIACMAVNDS----FVMDAWGKAHGADDKVQML--ADPGGAFTKAVDME 111 (167)
T ss_dssp TTCCEEEEEESSCH----HHHHHHHHHTTCTTTSEEE--ECTTSHHHHHTTCE
T ss_pred CCCCEEEEEeCCCH----HHHHHHHHhcCCCcceEEE--ECCCCcHHHHcCCc
Confidence 347 8888888842 3455566666654 55 34557899999864
No 66
>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=49.65 E-value=53 Score=22.82 Aligned_cols=43 Identities=9% Similarity=-0.007 Sum_probs=30.3
Q ss_pred CceEEEEeCCCChhhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCc
Q 047379 84 KGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKY 130 (154)
Q Consensus 84 kakLVIlA~Das~~~k~ki~~~c~~~~Vpvi~~~~tkeELG~a~Gk~ 130 (154)
.+.+|.|+.|. .+.+..+++.+++++..+.....++.+..|..
T Consensus 63 ~v~vv~vs~d~----~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~ 105 (161)
T 3drn_A 63 DVVVIGVSSDD----INSHKRFKEKYKLPFILVSDPDKKIRELYGAK 105 (161)
T ss_dssp CEEEEEEESCC----HHHHHHHHHHTTCCSEEEECTTSHHHHHTTCC
T ss_pred CCEEEEEeCCC----HHHHHHHHHHhCCCceEEECCcHHHHHHcCCC
Confidence 47888888873 34566677777766554345667899999865
No 67
>3bzy_B ESCU; auto cleavage protein, flagella, intein, T3SS, membrane, membrane protein, protein transport; 1.20A {Escherichia coli} SCOP: d.367.1.1 PDB: 3c00_B 3bzl_C 3bzo_B 3bzv_B 3c03_C 3bzz_B 3bzx_B
Probab=49.02 E-value=13 Score=25.24 Aligned_cols=27 Identities=19% Similarity=0.177 Sum_probs=21.5
Q ss_pred hhhhhHHHHHHhCCCcEEEecCCHHHHHhhh
Q 047379 97 LRKSEIEYYAMLAKVGVHHYNGNNVDLGTAC 127 (154)
Q Consensus 97 ~~k~ki~~~c~~~~Vpvi~~~~tkeELG~a~ 127 (154)
....+|...|+++|||+++ ...|.+++
T Consensus 27 ~~A~~I~~~A~e~~VPi~e----~~~LAr~L 53 (83)
T 3bzy_B 27 AKALQIIKLAELYDIPVIE----DIPLARSL 53 (83)
T ss_dssp HHHHHHHHHHHHTTCCEEE----CHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEe----CHHHHHHH
Confidence 4678999999999999997 35566655
No 68
>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10
Probab=48.46 E-value=68 Score=22.52 Aligned_cols=44 Identities=16% Similarity=0.089 Sum_probs=28.5
Q ss_pred CCce-EEEEeCCCChhhhhhHHHHHHhCCC--cEEEecCCHHHHHhhhCCc
Q 047379 83 SKGK-LIILSNNCPPLRKSEIEYYAMLAKV--GVHHYNGNNVDLGTACGKY 130 (154)
Q Consensus 83 gkak-LVIlA~Das~~~k~ki~~~c~~~~V--pvi~~~~tkeELG~a~Gk~ 130 (154)
..+. +|.|+.|.. ..+..+++.+++ |+-.......++.++.|..
T Consensus 69 ~~v~~vv~Is~d~~----~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~ 115 (162)
T 1tp9_A 69 KGVTEILCISVNDP----FVMKAWAKSYPENKHVKFLADGSATYTHALGLE 115 (162)
T ss_dssp TTCCCEEEEESSCH----HHHHHHHHTCTTCSSEEEEECTTSHHHHHTTCE
T ss_pred CCCCEEEEEECCCH----HHHHHHHHhcCCCCCeEEEECCCchHHHHcCcc
Confidence 3477 888888832 345667777777 4442234457899999865
No 69
>2ioj_A Hypothetical protein AF_1212; NYSGXRC, PFAM:DRTGG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Archaeoglobus fulgidus} SCOP: c.98.2.2
Probab=47.84 E-value=39 Score=23.81 Aligned_cols=79 Identities=18% Similarity=0.158 Sum_probs=40.5
Q ss_pred cee-cHHH--HHHHHhcCCceEEEEeCCCChhhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCcccEEEEEEeCcCchH
Q 047379 69 YTL-GYKT--VLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSD 145 (154)
Q Consensus 69 lv~-G~~~--VlkaIk~gkakLVIlA~Das~~~k~ki~~~c~~~~Vpvi~~~~tkeELG~a~Gk~~~vsvvaI~D~GfA~ 145 (154)
++. |.++ .+.++..-.+..+|++.+..+. ..+..+|++++||++....+.-+....+..-..- +-+-|+.=.+
T Consensus 56 ~I~~G~r~~~~l~a~~~~~~~~iIlt~g~~~~--~~i~~~A~~~~ipvl~t~~~T~~~~~~l~~~l~~--~~~~~~~ki~ 131 (139)
T 2ioj_A 56 LVTGGDRSDLLLTALEMPNVRCLILTGNLEPV--QLVLTKAEERGVPVILTGHDTLTAVSRLESVFGR--TRIRGEPKVG 131 (139)
T ss_dssp EEEETTCHHHHHHHTTCTTEEEEEEETTCCCC--HHHHHHHHHHTCCEEECSSCHHHHHHHHHTTCST--TEEEC-----
T ss_pred EEEcCCHHHHHHHHHhCCCCcEEEEcCCCCCC--HHHHHHHHHCCCeEEEECCCHHHHHHHHHHHhcc--CCCCCHHHHH
Confidence 344 5543 2344431458999999987653 3445788899999997555666655555432211 3344544444
Q ss_pred HHhcCC
Q 047379 146 IIKSLP 151 (154)
Q Consensus 146 ~i~~~~ 151 (154)
.+.++.
T Consensus 132 ~~~~~~ 137 (139)
T 2ioj_A 132 IMRELF 137 (139)
T ss_dssp ------
T ss_pred HHHHHH
Confidence 444443
No 70
>2i6d_A RNA methyltransferase, TRMH family; stuctural genomics, PORP gingivalis, knot, structural genomics, PSI-2, protein struc initiative; HET: MSE; 1.85A {Porphyromonas gingivalis}
Probab=47.33 E-value=6.4 Score=31.51 Aligned_cols=67 Identities=10% Similarity=0.030 Sum_probs=45.6
Q ss_pred HhC-CceecHHHHHHHHhcCCceEEEEeCCCChhhhhhHHHHHHhCCCcEEEecCCH-HHHHhhhCCcccEEEEEEeC
Q 047379 65 KSG-KYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNN-VDLGTACGKYFRVSCLSIID 140 (154)
Q Consensus 65 rAG-klv~G~~~VlkaIk~gkakLVIlA~Das~~~k~ki~~~c~~~~Vpvi~~~~tk-eELG~a~Gk~~~vsvvaI~D 140 (154)
+.| -++.|.+.|.++++...+.-|+++.+..+. +.. ..++|++ .-+. ++|-++.+....-.++|+..
T Consensus 24 ~~g~f~veG~~~v~eal~~~~i~~l~~~~~~~~~----l~~---~~~~~v~--~v~~~~~l~~ls~~~~~qGv~a~~~ 92 (257)
T 2i6d_A 24 REQAFAVEGPKLVGEMLPFYRCRMLVGTAAMLRA----VST---PHDAEVV--ELPESFDFKRISTQTTPQPLMAVFD 92 (257)
T ss_dssp HHTEEEEESHHHHHHHGGGSCEEEEEEEHHHHHT----SCC---CTTCEEE--EECTTCCGGGTCCSSSCCSEEEEEE
T ss_pred hcCcEEEEcHHHHHHHHhcCCcCEEEEEcCchHH----HHH---hcCCCEE--EeChHHHHHHHhcCCCCCeEEEEEE
Confidence 344 567899999999988337778887654322 211 4568887 3567 89999988654445677764
No 71
>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}
Probab=46.51 E-value=42 Score=25.01 Aligned_cols=47 Identities=9% Similarity=0.015 Sum_probs=32.3
Q ss_pred CceEEEEeCCCCh----hhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCc
Q 047379 84 KGKLIILSNNCPP----LRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKY 130 (154)
Q Consensus 84 kakLVIlA~Das~----~~k~ki~~~c~~~~Vpvi~~~~tkeELG~a~Gk~ 130 (154)
.+.+|.|..|-.. +..+.+..+++.+++++..+.....++.+..|..
T Consensus 92 ~v~vv~Vs~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~v~ 142 (218)
T 3u5r_E 92 GLAVVAINSNDAQAFPEETLERVGAEVKAYGYGFPYLKDASQSVAKAYGAA 142 (218)
T ss_dssp TEEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECTTCHHHHHHTCC
T ss_pred CcEEEEEECCcccccccCCHHHHHHHHHHhCCCccEEECCccHHHHHcCCC
Confidence 3778888876432 5667777788887765543335567899999864
No 72
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=46.34 E-value=39 Score=26.47 Aligned_cols=43 Identities=14% Similarity=0.175 Sum_probs=31.8
Q ss_pred HHHHHHHHhcCCceEEEEeCCCCh-------hhhhhHHHHHHhCCCcEEE
Q 047379 73 YKTVLRSLRTSKGKLIILSNNCPP-------LRKSEIEYYAMLAKVGVHH 115 (154)
Q Consensus 73 ~~~VlkaIk~gkakLVIlA~Das~-------~~k~ki~~~c~~~~Vpvi~ 115 (154)
.+.+.++|++.+.++|++.+=.+| ...+.|..+|++++++++.
T Consensus 149 ~~~l~~~l~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~ 198 (391)
T 3dzz_A 149 WADLEEKLATPSVRMMVFCNPHNPIGYAWSEEEVKRIAELCAKHQVLLIS 198 (391)
T ss_dssp HHHHHHHHTSTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHhccCceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCCEEEE
Confidence 466777787678898888553222 3468888999999999985
No 73
>3mfq_A TROA, high-affinity zinc uptake system protein ZNUA; metal binding protein; 2.60A {Streptococcus suis} SCOP: c.92.2.0
Probab=46.20 E-value=16 Score=29.38 Aligned_cols=23 Identities=4% Similarity=-0.114 Sum_probs=16.7
Q ss_pred CCChhhhhhHHHHHHhCCCcEEE
Q 047379 93 NCPPLRKSEIEYYAMLAKVGVHH 115 (154)
Q Consensus 93 Das~~~k~ki~~~c~~~~Vpvi~ 115 (154)
+.|+.....+.++.+.++|++|.
T Consensus 195 eps~~~l~~l~~~ik~~~v~~if 217 (282)
T 3mfq_A 195 EVANSDMIETVNLIIDHNIKAIF 217 (282)
T ss_dssp CCCHHHHHHHHHHHHHHTCCEEE
T ss_pred CCCHHHHHHHHHHHHHcCCCEEE
Confidence 44556677778888888888873
No 74
>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A
Probab=46.11 E-value=40 Score=22.82 Aligned_cols=44 Identities=5% Similarity=-0.025 Sum_probs=27.0
Q ss_pred CceEEEEeCCCChhhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCc
Q 047379 84 KGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKY 130 (154)
Q Consensus 84 kakLVIlA~Das~~~k~ki~~~c~~~~Vpvi~~~~tkeELG~a~Gk~ 130 (154)
.+.++.+..|.++. .+..+.+.+++++-.+.....++.+..|..
T Consensus 59 ~v~vv~v~~d~~~~---~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~ 102 (151)
T 2f9s_A 59 GVEIVAVNVGESKI---AVHNFMKSYGVNFPVVLDTDRQVLDAYDVS 102 (151)
T ss_dssp TEEEEEEEESCCHH---HHHHHHHHHTCCSCEEEETTSHHHHHTTCC
T ss_pred CeEEEEEECCCCHH---HHHHHHHHcCCCceEEECCchHHHHhcCCC
Confidence 47788888777653 444555555544432234556888888854
No 75
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=45.78 E-value=20 Score=30.83 Aligned_cols=40 Identities=10% Similarity=0.080 Sum_probs=28.0
Q ss_pred CceEEEEeCCCChhhhhhHHHHHHhCCCcEEEecCCHHHHH
Q 047379 84 KGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLG 124 (154)
Q Consensus 84 kakLVIlA~Das~~~k~ki~~~c~~~~Vpvi~~~~tkeELG 124 (154)
+++-|+||+|+++ ..+++..+=...+|+++.+..+...+-
T Consensus 279 ~lksVFIATDa~~-~~~ELk~~L~~~~v~vv~~~pe~a~ID 318 (362)
T 3zy2_A 279 GAKSVFVASDKDH-MIDEINEALKPYEIEAHRQEPDDMYTS 318 (362)
T ss_dssp TCSEEEEEESSCC-CHHHHHHHHGGGTCCEECCSSCCHHHH
T ss_pred CCcEEEEecCCHH-HHHHHHHHhhccCceEEEeCCchhHHH
Confidence 6999999999887 567776655556899886444433333
No 76
>2vt1_B Surface presentation of antigens protein SPAS; specificity switch, virulence, transmembrane, inner membrane, FLHB, YSCU, T3SS, plasmid; 2.00A {Shigella flexneri} SCOP: d.367.1.1
Probab=44.37 E-value=16 Score=25.34 Aligned_cols=28 Identities=14% Similarity=0.049 Sum_probs=22.4
Q ss_pred hhhhhHHHHHHhCCCcEEEecCCHHHHHhhhC
Q 047379 97 LRKSEIEYYAMLAKVGVHHYNGNNVDLGTACG 128 (154)
Q Consensus 97 ~~k~ki~~~c~~~~Vpvi~~~~tkeELG~a~G 128 (154)
....+|...|++++||+++ ...|.+++-
T Consensus 27 ~~A~~I~e~A~e~gVPi~e----~~~LAr~Ly 54 (93)
T 2vt1_B 27 QCALAVRKYANEVGIPTVR----DVKLARKLY 54 (93)
T ss_dssp HHHHHHHHHHHHTTCCEEE----CHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEE----CHHHHHHHH
Confidence 4678999999999999997 356666664
No 77
>2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus}
Probab=43.36 E-value=88 Score=24.43 Aligned_cols=73 Identities=8% Similarity=0.028 Sum_probs=46.1
Q ss_pred ceecHHHHHHHH-------hcCCceEEEEeCCCChhhh----------------------------------hhHHHHHH
Q 047379 69 YTLGYKTVLRSL-------RTSKGKLIILSNNCPPLRK----------------------------------SEIEYYAM 107 (154)
Q Consensus 69 lv~G~~~VlkaI-------k~gkakLVIlA~Das~~~k----------------------------------~ki~~~c~ 107 (154)
=..|.+.++.++ .+.--++||+.+|+++... .++.....
T Consensus 82 PE~g~dal~qa~~c~~~i~Wr~a~rllvl~TDa~~H~~gDg~l~gi~~pnd~~chl~~g~y~~s~~~Dyps~~q~~~~l~ 161 (212)
T 2iue_A 82 PKGQLDAVVQVAICLGEIGWRNGTRFLVLVTDNDFHLAKDKTLGTRQNTSDGRCHLDDGMYRSRGEPDYQSVVQLASKLA 161 (212)
T ss_dssp SBCHHHHHHHHHHCHHHHTCCSSEEEEEEECSSCBCCTTGGGGGTCCSCCCSSCCBSSSBBGGGGSSCCCCHHHHHHHHH
T ss_pred CchHHHHHHHHHHhhhhcccCCccEEEEEECcCCccccCCccccccccCCccccccCCCeeccCcccCCCCHHHHHHHHH
Confidence 345666777777 2337899999999998432 23555556
Q ss_pred hCCCcEEEecCCH------HHHHhhhCCcccEEEEEEeCcCchHH
Q 047379 108 LAKVGVHHYNGNN------VDLGTACGKYFRVSCLSIIDPGDSDI 146 (154)
Q Consensus 108 ~~~Vpvi~~~~tk------eELG~a~Gk~~~vsvvaI~D~GfA~~ 146 (154)
+++|+.+ |.-+. ++|...++.. .+++++..-++.
T Consensus 162 ~~~i~~i-favt~~~~~~Y~~l~~~i~~s----~v~~L~~dSsni 201 (212)
T 2iue_A 162 ENNIQPI-FVVPSRMVKTYEKLTTFIPKL----TIGELSDDSSNV 201 (212)
T ss_dssp HHTCEEE-EEEEHHHHHHHHHHHHHSTTC----EEEEESSCCHHH
T ss_pred hcCCcEE-EEEccchhHHHHHHHHHcccc----eeeeecCCcHHH
Confidence 6788888 56666 3444555532 577775554443
No 78
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Probab=43.08 E-value=51 Score=30.24 Aligned_cols=66 Identities=5% Similarity=0.148 Sum_probs=44.8
Q ss_pred ecHHHHHHHH--------hcCCceEEEEeCCCChhh-----------------------------------hhhHHHHHH
Q 047379 71 LGYKTVLRSL--------RTSKGKLIILSNNCPPLR-----------------------------------KSEIEYYAM 107 (154)
Q Consensus 71 ~G~~~VlkaI--------k~gkakLVIlA~Das~~~-----------------------------------k~ki~~~c~ 107 (154)
.|.+.++.++ +++--+|||+.+|++... ..++.....
T Consensus 221 ~g~dAl~qa~~c~~~igWr~~a~rllv~~TDa~~H~agDg~l~gi~~pnd~~chl~~~~~y~~s~~~DypSi~ql~~~l~ 300 (690)
T 3fcs_B 221 GGFDAIMQATVCDEKIGWRNDASHLLVFTTDAKTHIALDGRLAGIVQPNDGQCHVGSDNHYSASTTMDYPSLGLMTEKLS 300 (690)
T ss_dssp CHHHHHHHHHHCHHHHTCCSSSEEEEEEEESSCBCCTTGGGGGTCCSCCCCCCCBCTTCBBGGGGTSCCCCHHHHHHHHH
T ss_pred hHHHHHHHHhhcccccCCCCCceEEEEEECCCccccCCCccccceecCCCcceeecCCCccccccccCCCCHHHHHHHHH
Confidence 3678888887 334689999999999761 345666667
Q ss_pred hCCCcEEEecCCH------HHHHhhhCCcccEEEEEEeCc
Q 047379 108 LAKVGVHHYNGNN------VDLGTACGKYFRVSCLSIIDP 141 (154)
Q Consensus 108 ~~~Vpvi~~~~tk------eELG~a~Gk~~~vsvvaI~D~ 141 (154)
+++|..| |.-+. ++|...++.. +++++..
T Consensus 301 ~~~i~~i-favt~~~~~~y~~l~~~i~~s----~v~~l~~ 335 (690)
T 3fcs_B 301 QKNINLI-FAVTENVVNLYQNYSELIPGT----TVGVLSM 335 (690)
T ss_dssp HTTCEEE-EEEEGGGHHHHHHHHHHSTTC----EEEEECT
T ss_pred HcCCeEE-EEEeCCchhhHHHHHhhcCCc----eeeeecc
Confidence 7888877 45443 4677777643 4666643
No 79
>3psh_A Protein HI_1472; substrate binding protein, periplasmic binding protein, MOLY binding protein, metal transport; 1.50A {Haemophilus influenzae} PDB: 3psa_A
Probab=42.68 E-value=28 Score=27.51 Aligned_cols=55 Identities=15% Similarity=0.053 Sum_probs=36.0
Q ss_pred HHHHHHhcCCceEEEEeCCCChhhhhhHHHHHHhCCCcEEEecCC----------------------------HHHHHhh
Q 047379 75 TVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGN----------------------------NVDLGTA 126 (154)
Q Consensus 75 ~VlkaIk~gkakLVIlA~Das~~~k~ki~~~c~~~~Vpvi~~~~t----------------------------keELG~a 126 (154)
.-++.|..=+.-|||.....++...+++ +..|||++.+... -..||++
T Consensus 75 ~n~E~i~~l~PDlIi~~~~~~~~~~~~L----~~~Gipvv~~~~~~~~~~~~~~~~pt~~~~~~~~~~~~~~~i~~lg~~ 150 (326)
T 3psh_A 75 VNIESLLALKPDVVFVTNYAPSEMIKQI----SDVNIPVVAISLRTGEVGEKGKLNPTLTDEDKAYNDGLKQGIELIAEV 150 (326)
T ss_dssp BCHHHHHHTCCSEEEEETTCCHHHHHHH----HTTTCCEEEECSCCSCGGGTTCSSCCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHccCCCEEEEeCCCChHHHHHH----HHcCCCEEEEeccccccccccccccccccccchhhhhHHHHHHHHHHH
Confidence 4456666667889988765444443443 5678999963221 2578999
Q ss_pred hCCcccE
Q 047379 127 CGKYFRV 133 (154)
Q Consensus 127 ~Gk~~~v 133 (154)
+|++.++
T Consensus 151 lg~e~~A 157 (326)
T 3psh_A 151 FEKKQQG 157 (326)
T ss_dssp HTCHHHH
T ss_pred cCCHHHH
Confidence 9987553
No 80
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=41.40 E-value=1.2e+02 Score=23.71 Aligned_cols=62 Identities=13% Similarity=0.189 Sum_probs=44.2
Q ss_pred CCce---ecHHHHHHHHhc-------CCceEEEEeCCCChhhhhhHHHHHHhCCCcEEEecC--CHHHHHhhhCCc
Q 047379 67 GKYT---LGYKTVLRSLRT-------SKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNG--NNVDLGTACGKY 130 (154)
Q Consensus 67 Gklv---~G~~~VlkaIk~-------gkakLVIlA~Das~~~k~ki~~~c~~~~Vpvi~~~~--tkeELG~a~Gk~ 130 (154)
|++. .|.+.+++++.. ..++|+|+. |.++.....+..+++..+ .++.+.+ +.+++...+...
T Consensus 258 G~~~~~~Kg~~~li~a~~~l~~~~~~~~~~l~i~G-~g~~~~~~~l~~~~~~~~-~~~~~~g~~~~~~~~~~~~~a 331 (439)
T 3fro_A 258 GRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIG-KGDPELEGWARSLEEKHG-NVKVITEMLSREFVRELYGSV 331 (439)
T ss_dssp CCSSCTTBCHHHHHHHHHHHHTSGGGGGEEEEEEC-CCCHHHHHHHHHHHHHCT-TEEEECSCCCHHHHHHHHTTC
T ss_pred cccccccccHHHHHHHHHHHHhcccCCCeEEEEEc-CCChhHHHHHHHHHhhcC-CEEEEcCCCCHHHHHHHHHHC
Confidence 5554 577777777643 457776655 666667788888888887 6665566 889998877655
No 81
>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10
Probab=41.30 E-value=67 Score=22.18 Aligned_cols=41 Identities=10% Similarity=0.066 Sum_probs=25.3
Q ss_pred eEEEEeCCCChhhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCc
Q 047379 86 KLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKY 130 (154)
Q Consensus 86 kLVIlA~Das~~~k~ki~~~c~~~~Vpvi~~~~tkeELG~a~Gk~ 130 (154)
.+|.|+.|. + ..+..+++.+++++-.+.....++.+..|..
T Consensus 70 ~vv~is~d~-~---~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~ 110 (159)
T 2a4v_A 70 AVFGLSADS-V---TSQKKFQSKQNLPYHLLSDPKREFIGLLGAK 110 (159)
T ss_dssp EEEEEESCC-H---HHHHHHHHHHTCSSEEEECTTCHHHHHHTCB
T ss_pred cEEEEeCCC-H---HHHHHHHHHhCCCceEEECCccHHHHHhCCc
Confidence 778888883 2 3445566666654432234456888888864
No 82
>2i4r_A V-type ATP synthase subunit F; NESG, GR52A, ATP synthesis, hydrolase, structural genomics, protein structure initiative; 2.80A {Archaeoglobus fulgidus} SCOP: c.149.1.1
Probab=41.12 E-value=26 Score=24.38 Aligned_cols=42 Identities=5% Similarity=-0.098 Sum_probs=32.1
Q ss_pred hcCCceEEEEeCCCChhhhhhHHHHHHhCCCcEEEecCCHHH
Q 047379 81 RTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVD 122 (154)
Q Consensus 81 k~gkakLVIlA~Das~~~k~ki~~~c~~~~Vpvi~~~~tkeE 122 (154)
++....+|+|.++..+.....+..+-+..-.|.+...+++..
T Consensus 50 ~~~digIIlIte~ia~~i~~~i~~~~~~~~~P~IieIPs~~g 91 (102)
T 2i4r_A 50 KRDDVGVVIMKQEYLKKLPPVLRREIDEKVEPTFVSVGGTGG 91 (102)
T ss_dssp HCSSEEEEEEEGGGSTTSCHHHHTTTTTCCSSEEEEEC----
T ss_pred hCCCeEEEEEeHHHHHHHHHHHHHHHhCCCccEEEEECCCCC
Confidence 345799999999999999999988877778998876677663
No 83
>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}
Probab=40.92 E-value=23 Score=28.19 Aligned_cols=46 Identities=17% Similarity=0.022 Sum_probs=32.4
Q ss_pred HHHHHHHHhcCCceEEEEeC--CCChhhhhhHHHHHHhCCCcEEEecCC
Q 047379 73 YKTVLRSLRTSKGKLIILSN--NCPPLRKSEIEYYAMLAKVGVHHYNGN 119 (154)
Q Consensus 73 ~~~VlkaIk~gkakLVIlA~--Das~~~k~ki~~~c~~~~Vpvi~~~~t 119 (154)
.+.+.+.|.+.+.++|++.. +-.+...+.|..+|++++++++. +..
T Consensus 161 ~~~l~~~i~~~~~~~v~~~~~~~~~~~~l~~i~~l~~~~~~~li~-De~ 208 (425)
T 3ecd_A 161 YDQVEALAQQHKPSLIIAGFSAYPRKLDFARFRAIADSVGAKLMV-DMA 208 (425)
T ss_dssp HHHHHHHHHHHCCSEEEEECSCCCSCCCHHHHHHHHHHHTCEEEE-ECG
T ss_pred HHHHHHHHhhcCCcEEEEccccCCCcCCHHHHHHHHHHcCCEEEE-ECc
Confidence 35566777655678888863 32234568999999999999995 443
No 84
>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A
Probab=40.37 E-value=53 Score=23.28 Aligned_cols=46 Identities=7% Similarity=-0.056 Sum_probs=30.1
Q ss_pred ceEEEEeCCCCh----hhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCc
Q 047379 85 GKLIILSNNCPP----LRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKY 130 (154)
Q Consensus 85 akLVIlA~Das~----~~k~ki~~~c~~~~Vpvi~~~~tkeELG~a~Gk~ 130 (154)
+.+|.+..|... +....+..+.+.+++++-.+.....++.+.+|..
T Consensus 66 ~~~v~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~ 115 (188)
T 2cvb_A 66 VAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDETQEVAKAYRAL 115 (188)
T ss_dssp EEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSSHHHHHTTCC
T ss_pred eEEEEEEcCccccccccCHHHHHHHHHHhCCCceEEECCcchHHHHcCCC
Confidence 667777776532 5666777777777655443234556888888864
No 85
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=40.33 E-value=17 Score=28.66 Aligned_cols=60 Identities=15% Similarity=0.109 Sum_probs=36.6
Q ss_pred CceEEEEeCCCChhhhhhHHHHHHhCCCcEEEecCCHHHHHhhh-C---CcccEEEEEEeCcCchHHHh
Q 047379 84 KGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTAC-G---KYFRVSCLSIIDPGDSDIIK 148 (154)
Q Consensus 84 kakLVIlA~Das~~~k~ki~~~c~~~~Vpvi~~~~tkeELG~a~-G---k~~~vsvvaI~D~GfA~~i~ 148 (154)
.+.+||.|+|.++ .-..+...|+ .+|||.. -+.-+++... + ..-.. +|||...|-+..+.
T Consensus 91 ~adLVIaAT~d~~-~N~~I~~~ak-~gi~VNv--vD~p~~~~f~~Paiv~rg~l-~iaIST~G~sP~la 154 (223)
T 3dfz_A 91 NVFFIVVATNDQA-VNKFVKQHIK-NDQLVNM--ASSFSDGNIQIPAQFSRGRL-SLAISTDGASPLLT 154 (223)
T ss_dssp SCSEEEECCCCTH-HHHHHHHHSC-TTCEEEC-------CCSEECCEEEEETTE-EEEEECTTSCHHHH
T ss_pred CCCEEEECCCCHH-HHHHHHHHHh-CCCEEEE--eCCcccCeEEEeeEEEeCCE-EEEEECCCCCcHHH
Confidence 3788998888664 5566777788 9999974 4555555433 1 12245 68998877554443
No 86
>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*
Probab=39.97 E-value=27 Score=27.76 Aligned_cols=46 Identities=13% Similarity=0.047 Sum_probs=32.4
Q ss_pred HHHHHHHHhcCCceEEEEeC-CCC-hhhhhhHHHHHHhCCCcEEEecCC
Q 047379 73 YKTVLRSLRTSKGKLIILSN-NCP-PLRKSEIEYYAMLAKVGVHHYNGN 119 (154)
Q Consensus 73 ~~~VlkaIk~gkakLVIlA~-Das-~~~k~ki~~~c~~~~Vpvi~~~~t 119 (154)
.+.+.++|...+.++|++.. +.+ ..-.+.|..+|++++++++. +..
T Consensus 158 ~~~l~~~i~~~~~~~v~~~~~~~~~~~~l~~l~~l~~~~~~~li~-De~ 205 (420)
T 3gbx_A 158 YDEMAKLAKEHKPKMIIGGFSAYSGVVDWAKMREIADSIGAYLFV-DMA 205 (420)
T ss_dssp HHHHHHHHHHHCCSEEEECCTTCCSCCCHHHHHHHHHHTTCEEEE-ECT
T ss_pred HHHHHHHHHhcCCeEEEEecCccCCccCHHHHHHHHHHcCCEEEE-ECC
Confidence 35667777766688888843 222 12358899999999999996 443
No 87
>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}
Probab=39.76 E-value=51 Score=23.44 Aligned_cols=47 Identities=6% Similarity=-0.038 Sum_probs=30.3
Q ss_pred CceEEEEeCCCCh----hhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCc
Q 047379 84 KGKLIILSNNCPP----LRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKY 130 (154)
Q Consensus 84 kakLVIlA~Das~----~~k~ki~~~c~~~~Vpvi~~~~tkeELG~a~Gk~ 130 (154)
.+.+|.+..|... +..+.+..+.+.+++++-.+.....++.+.+|..
T Consensus 79 ~v~vv~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~ 129 (196)
T 2ywi_A 79 GVSFVAINSNDAEQYPEDSPENMKKVAEELGYPFPYLYDETQEVAKAYDAA 129 (196)
T ss_dssp TCEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSCHHHHHHTCC
T ss_pred CcEEEEEECCccccccccCHHHHHHHHHHcCCCceEEECCchHHHHHhCCC
Confidence 3777888777543 5566777777777655443234456788888854
No 88
>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*
Probab=39.39 E-value=40 Score=27.03 Aligned_cols=41 Identities=15% Similarity=0.201 Sum_probs=27.1
Q ss_pred HHHHHHHhcCCceEEEEeCCCChhhhhhHHHHHHhCCCcEE
Q 047379 74 KTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVH 114 (154)
Q Consensus 74 ~~VlkaIk~gkakLVIlA~Das~~~k~ki~~~c~~~~Vpvi 114 (154)
+.+.++++.|.-.+|+++...+....+++...|+++++.++
T Consensus 79 ~~~~ea~~~Gi~~iVi~t~G~~~~~~~~l~~~A~~~gv~li 119 (288)
T 2nu8_A 79 DSILEAIDAGIKLIITITEGIPTLDMLTVKVKLDEAGVRMI 119 (288)
T ss_dssp HHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEE
Confidence 44556666665556667776666666677777777777654
No 89
>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}
Probab=39.18 E-value=67 Score=22.03 Aligned_cols=46 Identities=13% Similarity=0.101 Sum_probs=34.2
Q ss_pred CceEEEEeCCCChhhhhhHHHHHHhCCCcEEEecCCH---HHHHhhhCC
Q 047379 84 KGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNN---VDLGTACGK 129 (154)
Q Consensus 84 kakLVIlA~Das~~~k~ki~~~c~~~~Vpvi~~~~tk---eELG~a~Gk 129 (154)
++.+|.|..|-..++.+.+..+++.+++++..+..+. .++.+.+|.
T Consensus 72 ~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~gv 120 (172)
T 2k6v_A 72 RVQVIFVSVDPERDPPEVADRYAKAFHPSFLGLSGSPEAVREAAQTFGV 120 (172)
T ss_dssp TEEEEEEESCTTTCCHHHHHHHHHHHCTTEEEECCCHHHHHHHHHHHTC
T ss_pred CEEEEEEEECCCCCCHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHhcCe
Confidence 5888899888766677788888888888877545566 366666664
No 90
>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A
Probab=39.00 E-value=81 Score=20.70 Aligned_cols=46 Identities=9% Similarity=-0.031 Sum_probs=29.8
Q ss_pred ceEEEEeCCCChh--hhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCc
Q 047379 85 GKLIILSNNCPPL--RKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKY 130 (154)
Q Consensus 85 akLVIlA~Das~~--~k~ki~~~c~~~~Vpvi~~~~tkeELG~a~Gk~ 130 (154)
+.++.+..|..+. ..+.+..+.+.+++++-.+.....++.+..|..
T Consensus 62 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~ 109 (148)
T 2b5x_A 62 LNVVAVHMPRSEDDLDPGKIKETAAEHDITQPIFVDSDHALTDAFENE 109 (148)
T ss_dssp SEEEEEECCCSTTTSSHHHHHHHHHHTTCCSCEEECSSCHHHHHTCCC
T ss_pred cEEEEEEcCCCccccCHHHHHHHHHHcCCCcceEECCchhHHHHhCCC
Confidence 7788887776432 456677777777655443235556888888853
No 91
>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A
Probab=38.53 E-value=29 Score=28.76 Aligned_cols=32 Identities=13% Similarity=0.123 Sum_probs=28.2
Q ss_pred CceEEEEeCCCChhhhhhHHHHHHhCCCcEEE
Q 047379 84 KGKLIILSNNCPPLRKSEIEYYAMLAKVGVHH 115 (154)
Q Consensus 84 kakLVIlA~Das~~~k~ki~~~c~~~~Vpvi~ 115 (154)
..-+||.+.|-.+.++..+.+.|..+++|++.
T Consensus 208 ~~DlVvd~~Dn~~~~r~~ln~~c~~~~~p~i~ 239 (353)
T 3h5n_A 208 EADIWVVSADHPFNLINWVNKYCVRANQPYIN 239 (353)
T ss_dssp CCSEEEECCCCSTTHHHHHHHHHHHTTCCEEE
T ss_pred cCCEEEEecCChHHHHHHHHHHHHHhCCCEEE
Confidence 47789999998777889999999999999994
No 92
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3
Probab=38.41 E-value=57 Score=25.75 Aligned_cols=43 Identities=14% Similarity=0.067 Sum_probs=30.6
Q ss_pred HHHHHHHHhcCCceEEEEeCCCCh-------hhhhhHHHHHHhCCCcEEE
Q 047379 73 YKTVLRSLRTSKGKLIILSNNCPP-------LRKSEIEYYAMLAKVGVHH 115 (154)
Q Consensus 73 ~~~VlkaIk~gkakLVIlA~Das~-------~~k~ki~~~c~~~~Vpvi~ 115 (154)
.+.+.++|+..+.++|++.+=.+| ...++|..+|++++++++.
T Consensus 151 ~~~l~~~l~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~ 200 (390)
T 1d2f_A 151 MGKLEAVLAKPECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVIS 200 (390)
T ss_dssp HHHHHHHHTSTTEEEEEEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHhccCCCeEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEE
Confidence 456667776657888888532222 2367889999999999985
No 93
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*
Probab=38.26 E-value=49 Score=26.17 Aligned_cols=43 Identities=5% Similarity=0.111 Sum_probs=31.2
Q ss_pred HHHHHHHHhcCCceEEEEeCCCC-------hhhhhhHHHHHHhCCCcEEE
Q 047379 73 YKTVLRSLRTSKGKLIILSNNCP-------PLRKSEIEYYAMLAKVGVHH 115 (154)
Q Consensus 73 ~~~VlkaIk~gkakLVIlA~Das-------~~~k~ki~~~c~~~~Vpvi~ 115 (154)
.+.+.++|++.+.++|++.+=.+ +...++|..+|++++++++.
T Consensus 153 ~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~ 202 (399)
T 1c7n_A 153 FQKLEKLSKDKNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWS 202 (399)
T ss_dssp HHHHHHHHTCTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEE
T ss_pred HHHHHHHhccCCCcEEEEcCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEE
Confidence 45666777756788988854222 23378899999999999985
No 94
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=37.99 E-value=1e+02 Score=21.46 Aligned_cols=53 Identities=13% Similarity=0.205 Sum_probs=40.6
Q ss_pred HHHHHHHhcCCceEEEEeCCCChhhhhhHHHHHHhCCCcEEE-ecCCHHHHHhh
Q 047379 74 KTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHH-YNGNNVDLGTA 126 (154)
Q Consensus 74 ~~VlkaIk~gkakLVIlA~Das~~~k~ki~~~c~~~~Vpvi~-~~~tkeELG~a 126 (154)
+.+++.++.+---||+.-.-+|.+-...+..-++..+|.|-. ...+.+||-+-
T Consensus 41 rdiiksmkdngkplvvfvngasqndvnefqneakkegvsydvlkstdpeeltqr 94 (112)
T 2lnd_A 41 RDIIKSMKDNGKPLVVFVNGASQNDVNEFQNEAKKEGVSYDVLKSTDPEELTQR 94 (112)
T ss_dssp HHHHHHHTTCCSCEEEEECSCCHHHHHHHHHHHHHHTCEEEEEECCCHHHHHHH
T ss_pred HHHHHHHHhcCCeEEEEecCcccccHHHHHHHHHhcCcchhhhccCCHHHHHHH
Confidence 456677766656677778889999999999999999999864 23477888653
No 95
>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A
Probab=37.66 E-value=28 Score=27.26 Aligned_cols=39 Identities=5% Similarity=0.123 Sum_probs=30.4
Q ss_pred HHHHHHHhcCCceEEEEeCCCChhhhhhHHHHHHhCCCcEEE
Q 047379 74 KTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHH 115 (154)
Q Consensus 74 ~~VlkaIk~gkakLVIlA~Das~~~k~ki~~~c~~~~Vpvi~ 115 (154)
+...+.+. ..-+||.+.| +..++..+...|..+++|++.
T Consensus 110 ~~~~~~~~--~~DvVi~~~d-~~~~r~~l~~~~~~~~~p~i~ 148 (251)
T 1zud_1 110 EALKDAVA--RADVVLDCTD-NMATRQEINAACVALNTPLIT 148 (251)
T ss_dssp HHHHHHHH--HCSEEEECCS-SHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHh--cCCEEEECCC-CHHHHHHHHHHHHHhCCCEEE
Confidence 33444444 4789999999 566889999999999999994
No 96
>3c01_E Surface presentation of antigens protein SPAS; auto cleavage protein, flagella, ESCU, YSCU, intein, T3SS, M inner membrane, transmembrane; 2.60A {Salmonella typhimurium} SCOP: d.367.1.1
Probab=37.57 E-value=20 Score=25.13 Aligned_cols=27 Identities=22% Similarity=0.220 Sum_probs=21.3
Q ss_pred hhhhhHHHHHHhCCCcEEEecCCHHHHHhhh
Q 047379 97 LRKSEIEYYAMLAKVGVHHYNGNNVDLGTAC 127 (154)
Q Consensus 97 ~~k~ki~~~c~~~~Vpvi~~~~tkeELG~a~ 127 (154)
....+|...|+++|||+++ ...|.+++
T Consensus 27 ~~A~~I~e~A~e~gVPi~e----~~~LAr~L 53 (98)
T 3c01_E 27 QRALAVRAYAEKVGVPVIV----DIKLARSL 53 (98)
T ss_dssp HHHHHHHHHHHHHTCCEEE----CHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCeec----CHHHHHHH
Confidence 4668999999999999997 35566555
No 97
>3t7y_A YOP proteins translocation protein U; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta; 2.10A {Chlamydia trachomatis} SCOP: d.367.1.0
Probab=36.71 E-value=21 Score=24.97 Aligned_cols=27 Identities=30% Similarity=0.167 Sum_probs=20.9
Q ss_pred hhhhhHHHHHHhCCCcEEEecCCHHHHHhhh
Q 047379 97 LRKSEIEYYAMLAKVGVHHYNGNNVDLGTAC 127 (154)
Q Consensus 97 ~~k~ki~~~c~~~~Vpvi~~~~tkeELG~a~ 127 (154)
....+|...|+++|||+++ ...|.+++
T Consensus 42 ~~A~~I~~~A~e~gVPi~e----~~~LAr~L 68 (97)
T 3t7y_A 42 LRAKRIIAEAEKYGVPIMR----NVPLAHQL 68 (97)
T ss_dssp HHHHHHHHHHHHHTCCEEE----CHHHHHHH
T ss_pred HHHHHHHHHHHHcCCeEEE----CHHHHHHH
Confidence 3568899999999999997 35555554
No 98
>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}
Probab=36.47 E-value=97 Score=20.87 Aligned_cols=44 Identities=7% Similarity=-0.025 Sum_probs=30.3
Q ss_pred CceEEEEeCCCChhhhhhHHHHHHhCCCcEEEecCC---HHHHHhhhCCc
Q 047379 84 KGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGN---NVDLGTACGKY 130 (154)
Q Consensus 84 kakLVIlA~Das~~~k~ki~~~c~~~~Vpvi~~~~t---keELG~a~Gk~ 130 (154)
.+.+|.|..|-++ ..+..+.+.+++++..+... ..++.+..|..
T Consensus 69 ~~~~v~v~~d~~~---~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~ 115 (150)
T 3fw2_A 69 YIGMLGISLDVDK---QQWKDAIKRDTLDWEQVCDFGGLNSEVAKQYSIY 115 (150)
T ss_dssp SEEEEEEECCSCH---HHHHHHHHHTTCCSEEECCSCGGGCHHHHHTTCC
T ss_pred CeEEEEEEcCCCH---HHHHHHHHHhCCCceEEEcCcccchHHHHHcCCC
Confidence 3788888888654 55666678888777643333 45888888854
No 99
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=35.96 E-value=1.2e+02 Score=21.72 Aligned_cols=40 Identities=8% Similarity=-0.003 Sum_probs=30.8
Q ss_pred EEEEeCCCChhhhhhHHHHHHhCCCcEEEecCCHHHHHhhh
Q 047379 87 LIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTAC 127 (154)
Q Consensus 87 LVIlA~Das~~~k~ki~~~c~~~~Vpvi~~~~tkeELG~a~ 127 (154)
+||+-=..++.+..++.+.-+.++..+.+ +-+..||-..+
T Consensus 3 ivivvfstdeetlrkfkdiikkngfkvrt-vrspqelkdsi 42 (134)
T 2l69_A 3 IVIVVFSTDEETLRKFKDIIKKNGFKVRT-VRSPQELKDSI 42 (134)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHTTCEEEE-ECSHHHHHHHH
T ss_pred EEEEEEeCCHHHHHHHHHHHHhcCceEEE-ecCHHHHHHHH
Confidence 45555556688888999998999998885 88888887655
No 100
>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}
Probab=35.76 E-value=99 Score=20.74 Aligned_cols=46 Identities=7% Similarity=0.003 Sum_probs=34.5
Q ss_pred CceEEEEeCCCChhhhhhHHHHHHhCCCcEEEecC---CHHHHHhhhCCc
Q 047379 84 KGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNG---NNVDLGTACGKY 130 (154)
Q Consensus 84 kakLVIlA~Das~~~k~ki~~~c~~~~Vpvi~~~~---tkeELG~a~Gk~ 130 (154)
.+.+|.|..| +.+..+.+..+.+.+++++-.+.. ...+|...+|..
T Consensus 60 ~v~~v~v~~d-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~ 108 (154)
T 3ia1_A 60 GVPFYVISRE-PRDTREVVLEYMKTYPRFIPLLASDRDRPHEVAARFKVL 108 (154)
T ss_dssp CCCEEEEECC-TTCCHHHHHHHHTTCTTEEECBCCSSCCHHHHHTTSSBC
T ss_pred CCeEEEEeCC-CcccHHHHHHHHHHcCCCcccccccccchHHHHHHhCCC
Confidence 4778888887 456678888888999988875333 678888888853
No 101
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=35.30 E-value=62 Score=22.52 Aligned_cols=40 Identities=10% Similarity=-0.065 Sum_probs=32.6
Q ss_pred cCCceEEEEeCCCChhhhhhHHHHHHhCCCcEEEecCCHH
Q 047379 82 TSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNV 121 (154)
Q Consensus 82 ~gkakLVIlA~Das~~~k~ki~~~c~~~~Vpvi~~~~tke 121 (154)
+....+|++..+..+.....+..+-.....|.+.-.+++.
T Consensus 44 ~~digIIlIte~~a~~i~~~i~~~~~~~~~P~Il~IPs~~ 83 (109)
T 2d00_A 44 RGGYALVAVDEALLPDPERAVERLMRGRDLPVLLPIAGLK 83 (109)
T ss_dssp HCCCSEEEEETTTCSCHHHHHHHHTTCCCCCEEEEESCGG
T ss_pred CCCeEEEEEeHHHHHhhHHHHHHHHhCCCCeEEEEECCCc
Confidence 3679999999999999998888876667799887566665
No 102
>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}
Probab=35.28 E-value=71 Score=21.61 Aligned_cols=48 Identities=6% Similarity=-0.069 Sum_probs=29.5
Q ss_pred CCceEEEEeCCCC---hhhhhhHHHHHHhCCCcEEEe-cCCHH----HHHhhhCCc
Q 047379 83 SKGKLIILSNNCP---PLRKSEIEYYAMLAKVGVHHY-NGNNV----DLGTACGKY 130 (154)
Q Consensus 83 gkakLVIlA~Das---~~~k~ki~~~c~~~~Vpvi~~-~~tke----ELG~a~Gk~ 130 (154)
..+.+|-|..|-. ++....+..+++.+++++-.+ ..+.. ++.+..|..
T Consensus 61 ~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~ 116 (158)
T 3eyt_A 61 DKVAVLGLHTVFEHHEAMTPISLKAFLHEYRIKFPVGVDQPGDGAMPRTMAAYQMR 116 (158)
T ss_dssp TTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEECCCSSSSCHHHHHTTCC
T ss_pred CCEEEEEEEecccccccCCHHHHHHHHHHcCCCceEEEcCccchhhHHHHHHcCCC
Confidence 3477777777632 346677888888887664322 22222 588888743
No 103
>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}
Probab=34.22 E-value=55 Score=26.40 Aligned_cols=39 Identities=15% Similarity=0.256 Sum_probs=24.5
Q ss_pred HHHHHhcCCceEEEEeCCCChhhhhhHHHHHHhCCCcEE
Q 047379 76 VLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVH 114 (154)
Q Consensus 76 VlkaIk~gkakLVIlA~Das~~~k~ki~~~c~~~~Vpvi 114 (154)
+.++++.|...+|++++-.++...+++...|+++++.++
T Consensus 87 v~ea~~~Gi~~vVi~t~G~~~~~~~~l~~~A~~~gi~vi 125 (294)
T 2yv1_A 87 VFEAIDAGIELIVVITEHIPVHDTMEFVNYAEDVGVKII 125 (294)
T ss_dssp HHHHHHTTCSEEEECCSCCCHHHHHHHHHHHHHHTCEEE
T ss_pred HHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEE
Confidence 445555554446666766666666777777777776554
No 104
>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}
Probab=33.60 E-value=56 Score=26.38 Aligned_cols=39 Identities=10% Similarity=0.176 Sum_probs=21.7
Q ss_pred HHHHHhcCCceEEEEeCCCChhhhhhHHHHHHhCCCcEE
Q 047379 76 VLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVH 114 (154)
Q Consensus 76 VlkaIk~gkakLVIlA~Das~~~k~ki~~~c~~~~Vpvi 114 (154)
+.++++.|...+|++++-.++...+++...|+++++.++
T Consensus 88 v~ea~~~Gi~~vVi~t~G~~~~~~~~l~~~A~~~gi~vi 126 (297)
T 2yv2_A 88 VYEAVDAGIRLVVVITEGIPVHDTMRFVNYARQKGATII 126 (297)
T ss_dssp HHHHHHTTCSEEEECCCCCCHHHHHHHHHHHHHHTCEEE
T ss_pred HHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEE
Confidence 344444443335555666665556666666666666544
No 105
>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A
Probab=33.51 E-value=1.2e+02 Score=20.86 Aligned_cols=30 Identities=10% Similarity=0.110 Sum_probs=23.4
Q ss_pred CceEEEEeCCCChhhhhhHHHHHHhCCCcE
Q 047379 84 KGKLIILSNNCPPLRKSEIEYYAMLAKVGV 113 (154)
Q Consensus 84 kakLVIlA~Das~~~k~ki~~~c~~~~Vpv 113 (154)
++.+|.|+.|-..++.+.+..+++.+++++
T Consensus 69 ~~~vv~is~d~~~d~~~~~~~~~~~~~~~~ 98 (174)
T 1xzo_A 69 DVRIISFSVDPENDKPKQLKKFAANYPLSF 98 (174)
T ss_dssp CCEEEEEESCTTTCCHHHHHHHHTTSCCCG
T ss_pred cEEEEEEEeCCCCCCHHHHHHHHHHcCCCC
Confidence 478899998865566778888889988764
No 106
>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*
Probab=33.45 E-value=29 Score=27.16 Aligned_cols=54 Identities=20% Similarity=0.106 Sum_probs=43.1
Q ss_pred CCceecHHHHHHHHhcCCceEEEEeCCCChhhhhhHHHHHHhCCCcEEEecCCHHHH
Q 047379 67 GKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDL 123 (154)
Q Consensus 67 Gklv~G~~~VlkaIk~gkakLVIlA~Das~~~k~ki~~~c~~~~Vpvi~~~~tkeEL 123 (154)
|--+.|.++..+.+++.++..+|||.- ......+.+.|...||+-| +-|+...|
T Consensus 131 GvpV~~~~dL~~~v~~~~Id~vIIAvP--s~~aq~v~d~lv~~GIk~I-~nFap~~l 184 (212)
T 3keo_A 131 GIPVYGISTINDHLIDSDIETAILTVP--STEAQEVADILVKAGIKGI-LSFSPVHL 184 (212)
T ss_dssp CCBEEEGGGHHHHC-CCSCCEEEECSC--GGGHHHHHHHHHHHTCCEE-EECSSSCC
T ss_pred CeEEeCHHHHHHHHHHcCCCEEEEecC--chhHHHHHHHHHHcCCCEE-EEcCCccc
Confidence 455678888888889999999999983 3345788999999999999 68887666
No 107
>1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1
Probab=33.17 E-value=75 Score=23.15 Aligned_cols=51 Identities=10% Similarity=-0.063 Sum_probs=34.3
Q ss_pred HHHHHHHhcCCceEEEEeCCCChhhhhhHHHHHHhCCCcEEEecCCHHHHHh
Q 047379 74 KTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGT 125 (154)
Q Consensus 74 ~~VlkaIk~gkakLVIlA~Das~~~k~ki~~~c~~~~Vpvi~~~~tkeELG~ 125 (154)
++|.+.|+..-...-+...+.++.+-.+|.. +...+|||+..++.+|.=..
T Consensus 25 ~~V~~~L~~~GiRvevD~~r~~e~Lg~kIR~-a~~~kvPy~lVVG~kE~e~~ 75 (130)
T 1v95_A 25 ESVGRKVRDLGMVVDLIFLNTEVSLSQALED-VSRGGSPFAIVITQQHQIHR 75 (130)
T ss_dssp HHHHHHHHTTTCCEEEEECTTSSCHHHHHHH-HHHHTCSEEEEECHHHHHHT
T ss_pred HHHHHHHHHCCCEEEEecCCCCCcHHHHHHH-HHHcCCCEEEEEechHHhcC
Confidence 4567777766666666555435667777776 46789999976777765433
No 108
>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B*
Probab=32.95 E-value=48 Score=27.70 Aligned_cols=42 Identities=12% Similarity=0.215 Sum_probs=32.4
Q ss_pred HHHHHHHHhcCCce-EEEEeCCCChhhhhhHHHHHHhCCCcEE
Q 047379 73 YKTVLRSLRTSKGK-LIILSNNCPPLRKSEIEYYAMLAKVGVH 114 (154)
Q Consensus 73 ~~~VlkaIk~gkak-LVIlA~Das~~~k~ki~~~c~~~~Vpvi 114 (154)
.+.+++++....++ +|++++..++....++..+|+.+++.++
T Consensus 93 ~~ai~ea~~~~Gv~~vViiT~G~~e~~~~~l~~~a~~~g~rli 135 (334)
T 3mwd_B 93 YDSTMETMNYAQIRTIAIIAEGIPEALTRKLIKKADQKGVTII 135 (334)
T ss_dssp HHHHHHHTTSTTCCEEEECCSCCCHHHHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEE
Confidence 35678888744455 5555999999888899999999998776
No 109
>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}
Probab=32.93 E-value=1.1e+02 Score=20.43 Aligned_cols=45 Identities=11% Similarity=0.078 Sum_probs=28.0
Q ss_pred CceEEEEeCCCChhhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCc
Q 047379 84 KGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKY 130 (154)
Q Consensus 84 kakLVIlA~Das~~~k~ki~~~c~~~~Vpvi~~~~tkeELG~a~Gk~ 130 (154)
.+.+|.+..|.+ ....+..+.+.+++++-.+.....++.+..|..
T Consensus 61 ~~~~v~v~~d~~--~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~ 105 (154)
T 3kcm_A 61 PFRMLCVSIDEG--GKVAVEEFFRKTGFTLPVLLDADKRVGKLYGTT 105 (154)
T ss_dssp SEEEEEEECCTT--HHHHHHHHHHHHCCCCCEEECTTCHHHHHHTCC
T ss_pred CeEEEEEEcCCc--chHHHHHHHHHcCCCeeEEecCchHHHHHhCCC
Confidence 466666666654 455666666776655443345666788888853
No 110
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0
Probab=32.63 E-value=77 Score=21.99 Aligned_cols=43 Identities=7% Similarity=0.151 Sum_probs=29.0
Q ss_pred HHHHHHHHhcCCceEEEEeCCCCh--------hhhhhHHHHHHhCCCcEEE
Q 047379 73 YKTVLRSLRTSKGKLIILSNNCPP--------LRKSEIEYYAMLAKVGVHH 115 (154)
Q Consensus 73 ~~~VlkaIk~gkakLVIlA~Das~--------~~k~ki~~~c~~~~Vpvi~ 115 (154)
.++.++.++...+++|++..-.++ ..-..+..+|+++++|++.
T Consensus 92 ~~~~i~~~~~~~~~vvl~~~~~p~~~~~~~~~~~~~~~~~~a~~~~~~~vd 142 (185)
T 3hp4_A 92 LTALVKKSQAANAMTALMEIYIPPNYGPRYSKMFTSSFTQISEDTNAHLMN 142 (185)
T ss_dssp HHHHHHHHHHTTCEEEEECCCCCSTTCHHHHHHHHHHHHHHHHHHCCEEEC
T ss_pred HHHHHHHHHHcCCeEEEEeCCCCCcccHHHHHHHHHHHHHHHHHcCCEEEc
Confidence 344566677666788887643332 2235668899999999995
No 111
>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti}
Probab=32.18 E-value=86 Score=23.10 Aligned_cols=45 Identities=11% Similarity=0.049 Sum_probs=27.7
Q ss_pred HhcCCce-EEEEeCCCChhhhhhHHHHHHhCC----CcEEEecCCHHHHHhhhCCc
Q 047379 80 LRTSKGK-LIILSNNCPPLRKSEIEYYAMLAK----VGVHHYNGNNVDLGTACGKY 130 (154)
Q Consensus 80 Ik~gkak-LVIlA~Das~~~k~ki~~~c~~~~----Vpvi~~~~tkeELG~a~Gk~ 130 (154)
++...+. +|-|+.|... ....+++.++ .|++. ....+++++.|..
T Consensus 87 ~~~~gv~~vv~Is~d~~~----~~~~f~~~~~~~~~fp~l~--D~~~~va~~yGv~ 136 (184)
T 3uma_A 87 ILARGVDDIAVVAVNDLH----VMGAWATHSGGMGKIHFLS--DWNAAFTKAIGME 136 (184)
T ss_dssp HHTTTCCEEEEEESSCHH----HHHHHHHHHTCTTTSEEEE--CTTCHHHHHTTCE
T ss_pred HHHcCCCEEEEEECCCHH----HHHHHHHHhCCCCceEEEE--cCchHHHHHcCCc
Confidence 3333466 8888888433 3445555555 56663 4447899999864
No 112
>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Probab=31.19 E-value=61 Score=24.85 Aligned_cols=45 Identities=16% Similarity=0.151 Sum_probs=32.3
Q ss_pred HHHHHHHHhcC------CceEEEEeCCCCh-------hhhhhHHHHHHhCCCcEEEecCC
Q 047379 73 YKTVLRSLRTS------KGKLIILSNNCPP-------LRKSEIEYYAMLAKVGVHHYNGN 119 (154)
Q Consensus 73 ~~~VlkaIk~g------kakLVIlA~Das~-------~~k~ki~~~c~~~~Vpvi~~~~t 119 (154)
.+.+.+.|++. +.++|++..- +| ...++|..+|+++++.++. +..
T Consensus 128 ~~~l~~~l~~~~~~~~~~~~~v~~~~~-~ptG~~~~~~~l~~i~~~~~~~~~~li~-De~ 185 (359)
T 1svv_A 128 VADIESALHENRSEHMVIPKLVYISNT-TEVGTQYTKQELEDISASCKEHGLYLFL-DGA 185 (359)
T ss_dssp HHHHHHHHHHSCSTTSCEEEEEEEESS-CTTSCCCCHHHHHHHHHHHHHHTCEEEE-ECT
T ss_pred HHHHHHHHHHHHhccCCCceEEEEEcC-CCCceecCHHHHHHHHHHHHHhCCEEEE-Ecc
Confidence 46677777765 4888888643 33 2267889999999999995 444
No 113
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=31.13 E-value=59 Score=25.78 Aligned_cols=59 Identities=8% Similarity=0.023 Sum_probs=43.0
Q ss_pred HHHHHHHHhcCCceEEEEeCCCChhhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCcccEEEEEEe
Q 047379 73 YKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSII 139 (154)
Q Consensus 73 ~~~VlkaIk~gkakLVIlA~Das~~~k~ki~~~c~~~~Vpvi~~~~tkeELG~a~Gk~~~vsvvaI~ 139 (154)
.+++..++..| +.+|+ +|..-..+...|..+++|++-=..|..|+-+|...... .|.+.
T Consensus 96 ~~~a~~Ai~AG-A~fIv-----sP~~~~~vi~~~~~~gi~~ipGv~TptEi~~A~~~Gad--~vK~F 154 (232)
T 4e38_A 96 GEQALAAKEAG-ATFVV-----SPGFNPNTVRACQEIGIDIVPGVNNPSTVEAALEMGLT--TLKFF 154 (232)
T ss_dssp HHHHHHHHHHT-CSEEE-----CSSCCHHHHHHHHHHTCEEECEECSHHHHHHHHHTTCC--EEEEC
T ss_pred HHHHHHHHHcC-CCEEE-----eCCCCHHHHHHHHHcCCCEEcCCCCHHHHHHHHHcCCC--EEEEC
Confidence 68888999888 77776 45555677788999999997435699999888754432 35554
No 114
>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}
Probab=30.90 E-value=61 Score=26.16 Aligned_cols=46 Identities=11% Similarity=0.085 Sum_probs=33.0
Q ss_pred HHHHHHHHhcCCceEEEEeCCCCh-------hhhhhHHHHHHhCCCcEEEecCC
Q 047379 73 YKTVLRSLRTSKGKLIILSNNCPP-------LRKSEIEYYAMLAKVGVHHYNGN 119 (154)
Q Consensus 73 ~~~VlkaIk~gkakLVIlA~Das~-------~~k~ki~~~c~~~~Vpvi~~~~t 119 (154)
.+.+.++|...+.++|++..=-+| ...++|..+|+++++.++. +..
T Consensus 183 ~~~le~~i~~~~~~~vil~~p~nptG~~~~~~~l~~l~~l~~~~~~~li~-De~ 235 (421)
T 3l8a_A 183 FEQLEKDIIDNNVKIYLLCSPHNPGGRVWDNDDLIKIAELCKKHGVILVS-DEI 235 (421)
T ss_dssp HHHHHHHHHHTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHHTCEEEE-ECT
T ss_pred HHHHHHHhhccCCeEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEE-Ecc
Confidence 466777777677888888543333 3468888999999999995 443
No 115
>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A
Probab=30.89 E-value=1.4e+02 Score=21.68 Aligned_cols=48 Identities=6% Similarity=-0.022 Sum_probs=31.7
Q ss_pred CCceEEEEeCCCChhhhhhHHHHHHhCCCcEEEecCCHH---HHHhhhCCc
Q 047379 83 SKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNV---DLGTACGKY 130 (154)
Q Consensus 83 gkakLVIlA~Das~~~k~ki~~~c~~~~Vpvi~~~~tke---ELG~a~Gk~ 130 (154)
+.+.+|.|+.|-..++.+.+..+++.++.++..+.++.+ ++.+.+|..
T Consensus 77 ~~v~vv~Is~D~~~d~~~~~~~~~~~~~~~~~~l~~~~d~~~~~~~~~gv~ 127 (200)
T 2b7k_A 77 ITLQPLFITCDPARDSPAVLKEYLSDFHPSILGLTGTFDEVKNACKKYRVY 127 (200)
T ss_dssp CCCEEEEEESCTTTCCHHHHHHHHTTSCTTCEEEECCHHHHHHHHHHTTC-
T ss_pred CceEEEEEECCCCCCCHHHHHHHHHHcCCCceEEeCCHHHHHHHHHHcCcE
Confidence 468889999886555667788888888877653334443 455666653
No 116
>1jdq_A TM006 protein, hypothetical protein TM0983; structural genomics; NMR {Thermotoga maritima} SCOP: d.68.3.3
Probab=30.24 E-value=67 Score=21.91 Aligned_cols=28 Identities=14% Similarity=-0.097 Sum_probs=22.5
Q ss_pred eEEEEeCCCChhhhhhHHHHHHhCCCcEEE
Q 047379 86 KLIILSNNCPPLRKSEIEYYAMLAKVGVHH 115 (154)
Q Consensus 86 kLVIlA~Das~~~k~ki~~~c~~~~Vpvi~ 115 (154)
.|.|++.|... .+.|..+|+..|-.++.
T Consensus 55 ~L~Vl~dd~~a--~~dI~~~~~~~G~~v~~ 82 (98)
T 1jdq_A 55 ILEVWIDYPMS--KERIPETVKKLGHEVLE 82 (98)
T ss_dssp EEEEEESSCTH--HHHHHHHHHHSSCCEEE
T ss_pred EEEEEECCccH--HHHHHHHHHHCCCEEEE
Confidence 48888888654 78899999999988774
No 117
>3ib7_A ICC protein; metallophosphoesterase, alpha-beta fold, swapped-dimer, HYDR; HET: BTB; 1.60A {Mycobacterium tuberculosis} PDB: 3ib8_A* 2hy1_A 2hyp_A 2hyo_A
Probab=30.01 E-value=85 Score=24.14 Aligned_cols=48 Identities=15% Similarity=0.153 Sum_probs=30.0
Q ss_pred HHHHHHHhc--CCceEEEEeCCCChhh----h----hhHHHHHHhCCCcEEEecCCHH
Q 047379 74 KTVLRSLRT--SKGKLIILSNNCPPLR----K----SEIEYYAMLAKVGVHHYNGNNV 121 (154)
Q Consensus 74 ~~VlkaIk~--gkakLVIlA~Das~~~----k----~ki~~~c~~~~Vpvi~~~~tke 121 (154)
+.+++.+++ .++.+||++.|.-... . +.+..+.+..++|++...|+-+
T Consensus 54 ~~~l~~i~~~~~~~d~vi~~GDl~~~~~~~~~~~~~~~l~~l~~~~~~pv~~v~GNHD 111 (330)
T 3ib7_A 54 GELLEQLNQSGLRPDAIVFTGDLADKGEPAAYRKLRGLVEPFAAQLGAELVWVMGNHD 111 (330)
T ss_dssp HHHHHHHHHHTCCCSEEEECSCCBTTCCHHHHHHHHHHHHHHHHHHTCEEEECCCTTS
T ss_pred HHHHHHHHhcCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHhhcCCCEEEeCCCCC
Confidence 445666665 6899999999986532 1 2223333345899886556554
No 118
>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1
Probab=29.93 E-value=71 Score=25.62 Aligned_cols=39 Identities=8% Similarity=0.059 Sum_probs=24.1
Q ss_pred HHHHHhcCCceEEEEeCCCChhhhhhHHHHHHhCCCcEE
Q 047379 76 VLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVH 114 (154)
Q Consensus 76 VlkaIk~gkakLVIlA~Das~~~k~ki~~~c~~~~Vpvi 114 (154)
+.++++.|...+|++++..++....++...|+++++.++
T Consensus 81 ~~ea~~~Gi~~vVi~t~G~~~~~~~~l~~~a~~~gi~vi 119 (288)
T 1oi7_A 81 ALEAAHAGIPLIVLITEGIPTLDMVRAVEEIKALGSRLI 119 (288)
T ss_dssp HHHHHHTTCSEEEECCSCCCHHHHHHHHHHHHHHTCEEE
T ss_pred HHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEE
Confidence 444455554336666766666666677777777776554
No 119
>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...
Probab=29.66 E-value=45 Score=26.33 Aligned_cols=46 Identities=17% Similarity=0.154 Sum_probs=31.6
Q ss_pred HHHHHHHHhcCCceEEEEe-CCCChh-hhhhHHHHHHhCCCcEEEecCC
Q 047379 73 YKTVLRSLRTSKGKLIILS-NNCPPL-RKSEIEYYAMLAKVGVHHYNGN 119 (154)
Q Consensus 73 ~~~VlkaIk~gkakLVIlA-~Das~~-~k~ki~~~c~~~~Vpvi~~~~t 119 (154)
.+.+.++|...+.++|++. ...+.. -.+.|..+|++++++++. +..
T Consensus 152 ~~~l~~~i~~~~~~~v~~~~~~~~~~~~l~~i~~l~~~~~~~li~-Dea 199 (405)
T 2vi8_A 152 YDDVREKARLHRPKLIVAAAAAYPRIIDFAKFREIADEVGAYLMV-DMA 199 (405)
T ss_dssp HHHHHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHHTCEEEE-ECT
T ss_pred HHHHHHHHHhcCCeEEEEeCCCCCccCCHHHHHHHHHHcCCEEEE-Ecc
Confidence 3556677765456788874 333322 368899999999999995 444
No 120
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=29.52 E-value=73 Score=25.08 Aligned_cols=42 Identities=12% Similarity=0.109 Sum_probs=28.7
Q ss_pred HHHHHHHHhcCCceEEEEeCCC-------ChhhhhhHHHHHHhCCCcEEE
Q 047379 73 YKTVLRSLRTSKGKLIILSNNC-------PPLRKSEIEYYAMLAKVGVHH 115 (154)
Q Consensus 73 ~~~VlkaIk~gkakLVIlA~Da-------s~~~k~ki~~~c~~~~Vpvi~ 115 (154)
.+.+.++|+. +.++|++..=. ++...++|..+|+++++.++.
T Consensus 169 ~~~l~~~l~~-~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~ 217 (407)
T 3nra_A 169 LTGLEEAFKA-GARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIA 217 (407)
T ss_dssp HHHHHHHHHT-TCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHhh-CCcEEEEcCCCCCCCcccCHHHHHHHHHHHHHcCCEEEE
Confidence 3556667765 56777664322 223378899999999999985
No 121
>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}
Probab=29.41 E-value=65 Score=23.10 Aligned_cols=44 Identities=7% Similarity=0.010 Sum_probs=27.3
Q ss_pred CCceEEEEeCCCChhhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCc
Q 047379 83 SKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKY 130 (154)
Q Consensus 83 gkakLVIlA~Das~~~k~ki~~~c~~~~Vpvi~~~~tkeELG~a~Gk~ 130 (154)
..+.+|.|+.|..+ .+..+++.+++++..+.....++.++.|..
T Consensus 84 ~~~~vv~Vs~D~~~----~~~~~~~~~~~~f~~l~D~~~~~~~~~gv~ 127 (179)
T 3ixr_A 84 INATVLGVSRDSVK----SHDSFCAKQGFTFPLVSDSDAILCKAFDVI 127 (179)
T ss_dssp TTEEEEEEESCCHH----HHHHHHHHHTCCSCEEECTTCHHHHHTTCE
T ss_pred CCCEEEEEcCCCHH----HHHHHHHHcCCceEEEECCchHHHHHcCCc
Confidence 34778888888543 344555565544332234566899999874
No 122
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=29.34 E-value=84 Score=24.12 Aligned_cols=40 Identities=10% Similarity=0.223 Sum_probs=26.8
Q ss_pred HHHHHHHHhcC--CceEEEEeCCCChhhhhhHHHHHHhCCCcEEE
Q 047379 73 YKTVLRSLRTS--KGKLIILSNNCPPLRKSEIEYYAMLAKVGVHH 115 (154)
Q Consensus 73 ~~~VlkaIk~g--kakLVIlA~Das~~~k~ki~~~c~~~~Vpvi~ 115 (154)
...+++++.++ ...++.+-+|-++ ..+..+|+++|||+..
T Consensus 17 ~~~~l~~l~~~~l~~~I~~Vit~~~~---~~v~~~A~~~gIp~~~ 58 (212)
T 3av3_A 17 FQAIVDAAKRGDLPARVALLVCDRPG---AKVIERAARENVPAFV 58 (212)
T ss_dssp HHHHHHHHHTTCCCEEEEEEEESSTT---CHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHhCCCCCeEEEEEeCCCC---cHHHHHHHHcCCCEEE
Confidence 34667888777 3556555555322 2567889999999984
No 123
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=29.00 E-value=45 Score=26.40 Aligned_cols=43 Identities=9% Similarity=0.064 Sum_probs=31.6
Q ss_pred HHHHHHHHhcCCceEEEEeCCCChh----hhhhHHHHHHhCCCcEEE
Q 047379 73 YKTVLRSLRTSKGKLIILSNNCPPL----RKSEIEYYAMLAKVGVHH 115 (154)
Q Consensus 73 ~~~VlkaIk~gkakLVIlA~Das~~----~k~ki~~~c~~~~Vpvi~ 115 (154)
.+.+.++|.+.+.++|++..=.+|. -.+.|..+|++++++++.
T Consensus 125 ~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~ 171 (416)
T 3isl_A 125 PEDIIREIKKVKPKIVAMVHGETSTGRIHPLKAIGEACRTEDALFIV 171 (416)
T ss_dssp HHHHHHHHHHHCCSEEEEESEETTTTEECCCHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHhhCCCcEEEEEccCCCCceecCHHHHHHHHHHcCCEEEE
Confidence 3567777775567888887632321 258899999999999995
No 124
>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*
Probab=28.48 E-value=43 Score=26.10 Aligned_cols=31 Identities=13% Similarity=0.141 Sum_probs=27.0
Q ss_pred CceEEEEeCCCChhhhhhHHHHHHhCCCcEEE
Q 047379 84 KGKLIILSNNCPPLRKSEIEYYAMLAKVGVHH 115 (154)
Q Consensus 84 kakLVIlA~Das~~~k~ki~~~c~~~~Vpvi~ 115 (154)
..-+||.+.|. +.++..+...|...++|++.
T Consensus 121 ~~DvVi~~~d~-~~~~~~l~~~~~~~~~p~i~ 151 (249)
T 1jw9_B 121 EHDLVLDCTDN-VAVRNQLNAGCFAAKVPLVS 151 (249)
T ss_dssp TSSEEEECCSS-HHHHHHHHHHHHHHTCCEEE
T ss_pred CCCEEEEeCCC-HHHHHHHHHHHHHcCCCEEE
Confidence 48899999985 56888999999999999994
No 125
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Probab=28.45 E-value=47 Score=26.40 Aligned_cols=41 Identities=15% Similarity=0.062 Sum_probs=29.7
Q ss_pred HHHHHHHhcCCceEEEEeC-CCChhhhhhHHHHHHhCCCcEEE
Q 047379 74 KTVLRSLRTSKGKLIILSN-NCPPLRKSEIEYYAMLAKVGVHH 115 (154)
Q Consensus 74 ~~VlkaIk~gkakLVIlA~-Das~~~k~ki~~~c~~~~Vpvi~ 115 (154)
+.+.++|. .+.++|++.. ...+.-.++|..+|++++++++.
T Consensus 119 ~~l~~~i~-~~~~~v~~~~~~g~~~~~~~i~~l~~~~~~~li~ 160 (390)
T 3b8x_A 119 ESLKEAVT-DSTKAILTVNLLGNPNNFDEINKIIGGRDIILLE 160 (390)
T ss_dssp HHHHHHCC-TTEEEEEEECGGGCCCCHHHHHHHHTTSCCEEEE
T ss_pred HHHHHHhC-cCCeEEEEECCccChhhHHHHHHHHHHcCCEEEE
Confidence 44555564 4678888864 33345578999999999999985
No 126
>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*
Probab=28.31 E-value=90 Score=24.51 Aligned_cols=43 Identities=7% Similarity=0.048 Sum_probs=29.8
Q ss_pred HHHHHHHHhc--CCceEEEEeC-------CCChhhhhhHHHHHHhCCCcEEE
Q 047379 73 YKTVLRSLRT--SKGKLIILSN-------NCPPLRKSEIEYYAMLAKVGVHH 115 (154)
Q Consensus 73 ~~~VlkaIk~--gkakLVIlA~-------Das~~~k~ki~~~c~~~~Vpvi~ 115 (154)
.+.+.+++++ .+.++|++.+ ..+....+++..+|+++++.++.
T Consensus 160 ~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~ 211 (397)
T 3fsl_A 160 FNDLLATLKTLQAGSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFL 211 (397)
T ss_dssp HHHHHHHHTTCCTTCEEEECSSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHhCCCCCEEEEeCCCCCCCCcCCCHHHHHHHHHHHHhCCEEEEE
Confidence 3566677764 4567777752 23334567889999999999985
No 127
>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}
Probab=28.27 E-value=48 Score=26.20 Aligned_cols=46 Identities=13% Similarity=0.009 Sum_probs=31.8
Q ss_pred HHHHHHHHhcCCceEEEEeCCCCh--hhhhhHHHHHHhCCCcEEEecCC
Q 047379 73 YKTVLRSLRTSKGKLIILSNNCPP--LRKSEIEYYAMLAKVGVHHYNGN 119 (154)
Q Consensus 73 ~~~VlkaIk~gkakLVIlA~Das~--~~k~ki~~~c~~~~Vpvi~~~~t 119 (154)
.+.+.++|...+.++|++.+-..+ .-.+.|..+|++++++++. +..
T Consensus 152 ~~~l~~~l~~~~~~~v~~~~p~~~~~~~l~~i~~l~~~~~~~li~-Dea 199 (407)
T 2dkj_A 152 LEEVRRLALEHRPKVIVAGASAYPRFWDFKAFREIADEVGAYLVV-DMA 199 (407)
T ss_dssp HHHHHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHHTCEEEE-ECT
T ss_pred HHHHHHHHhhcCCeEEEEeccccCCCCCHHHHHHHHHHcCCEEEE-Ecc
Confidence 356677776556788888433223 2358899999999999995 444
No 128
>1ivn_A Thioesterase I; hydrolase, protease; 1.90A {Escherichia coli} SCOP: c.23.10.5 PDB: 1u8u_A* 1j00_A* 1jrl_A 1v2g_A*
Probab=27.99 E-value=1.3e+02 Score=21.10 Aligned_cols=43 Identities=9% Similarity=0.131 Sum_probs=28.6
Q ss_pred HHHHHHHHhcCCceEEEEeCCCChh--------hhhhHHHHHHhCCCcEEE
Q 047379 73 YKTVLRSLRTSKGKLIILSNNCPPL--------RKSEIEYYAMLAKVGVHH 115 (154)
Q Consensus 73 ~~~VlkaIk~gkakLVIlA~Das~~--------~k~ki~~~c~~~~Vpvi~ 115 (154)
.++.++.+++..+++|++..-.++. .-..+..+|+.++|+++.
T Consensus 88 l~~li~~~~~~~~~vil~~~~~p~~~~~~~~~~~n~~~~~~a~~~~v~~iD 138 (190)
T 1ivn_A 88 LRQILQDVKAANAEPLLMQIRLPANYGRRYNEAFSAIYPKLAKEFDVPLLP 138 (190)
T ss_dssp HHHHHHHHHHTTCEEEEECCCCCGGGCHHHHHHHHHHHHHHHHHTTCCEEC
T ss_pred HHHHHHHHHHcCCCEEEEeccCCcchhHHHHHHHHHHHHHHHHHcCCeEEc
Confidence 4456667766557777775433332 234567899999999995
No 129
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*
Probab=27.71 E-value=78 Score=24.70 Aligned_cols=41 Identities=20% Similarity=0.284 Sum_probs=29.3
Q ss_pred HHHHHHHHhcCCceEEEEeCCCCh-------hhhhhHHHHHHhCCCcEEE
Q 047379 73 YKTVLRSLRTSKGKLIILSNNCPP-------LRKSEIEYYAMLAKVGVHH 115 (154)
Q Consensus 73 ~~~VlkaIk~gkakLVIlA~Das~-------~~k~ki~~~c~~~~Vpvi~ 115 (154)
.+.+.++|+. .++|++.+=.+| ...++|..+|++++++++.
T Consensus 155 ~~~l~~~l~~--~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~ 202 (391)
T 4dq6_A 155 YEDIENKIKD--VKLFILCNPHNPVGRVWTKDELKKLGDICLKHNVKIIS 202 (391)
T ss_dssp HHHHHHHCTT--EEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHhhc--CCEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEe
Confidence 3556666665 788877653333 4468888999999999985
No 130
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=27.64 E-value=2.1e+02 Score=22.88 Aligned_cols=85 Identities=9% Similarity=0.064 Sum_probs=51.6
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHhC---Cc-ee---------cHHHHHHHH-hcCCceEEEEeCCCChhhhhhHHHHH
Q 047379 41 SKMVTSKKTKKTHESINNRLALVMKSG---KY-TL---------GYKTVLRSL-RTSKGKLIILSNNCPPLRKSEIEYYA 106 (154)
Q Consensus 41 ~~~~~~~k~~~~~~kil~lLglA~rAG---kl-v~---------G~~~VlkaI-k~gkakLVIlA~Das~~~k~ki~~~c 106 (154)
+.-.|+.+.....++++.++...++.+ .+ .. |.+.-.+.. ..| +.-||+ .|.+++....+...|
T Consensus 69 ~a~~rAL~~G~~~~~~~~~v~~~r~~~~~~Pivlm~Y~n~v~~~g~~~f~~~~~~aG-vdGvIi-pDlp~ee~~~~~~~~ 146 (271)
T 3nav_A 69 GANLRALAAKTTPDICFELIAQIRARNPETPIGLLMYANLVYARGIDDFYQRCQKAG-VDSVLI-ADVPTNESQPFVAAA 146 (271)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHCTTSCEEEEECHHHHHHTCHHHHHHHHHHHT-CCEEEE-TTSCGGGCHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHHhHHHHHHHHHHCC-CCEEEE-CCCCHHHHHHHHHHH
Confidence 333444444445568888888888762 22 22 444444444 444 555555 599998899999999
Q ss_pred HhCCCcEEEe--cC-CHHHHHhhh
Q 047379 107 MLAKVGVHHY--NG-NNVDLGTAC 127 (154)
Q Consensus 107 ~~~~Vpvi~~--~~-tkeELG~a~ 127 (154)
+.+++..+.. .. +.+.+-.+.
T Consensus 147 ~~~gl~~I~lvap~t~~eri~~i~ 170 (271)
T 3nav_A 147 EKFGIQPIFIAPPTASDETLRAVA 170 (271)
T ss_dssp HHTTCEEEEEECTTCCHHHHHHHH
T ss_pred HHcCCeEEEEECCCCCHHHHHHHH
Confidence 9999765521 22 345555554
No 131
>3kc2_A Uncharacterized protein YKR070W; HAD-like, mitochondral protein, PSI, MCSG, structural genomi protein structure initiative; HET: MSE; 1.55A {Saccharomyces cerevisiae} PDB: 3rf6_A*
Probab=27.61 E-value=55 Score=27.10 Aligned_cols=48 Identities=23% Similarity=0.229 Sum_probs=35.8
Q ss_pred hCCceecHHHHHHHHhcCCceEEEEeCCCChhhhhhHHHHHHhCCCcE
Q 047379 66 SGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGV 113 (154)
Q Consensus 66 AGklv~G~~~VlkaIk~gkakLVIlA~Das~~~k~ki~~~c~~~~Vpv 113 (154)
.+...-|..+.++.+++....++|+.++.+.........+.+..+||+
T Consensus 27 g~~~~p~a~~~l~~l~~~g~~~~~vTNn~~~~~~~~~~~l~~~lgi~~ 74 (352)
T 3kc2_A 27 GKKPIAGASDALKLLNRNKIPYILLTNGGGFSERARTEFISSKLDVDV 74 (352)
T ss_dssp TTEECTTHHHHHHHHHHTTCCEEEECSCCSSCHHHHHHHHHHHHTSCC
T ss_pred CCeeCcCHHHHHHHHHHCCCEEEEEeCCCCCCchHHHHHHHHhcCCCC
Confidence 446667888899999988899999999987655555555555567764
No 132
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}
Probab=27.24 E-value=1.1e+02 Score=24.49 Aligned_cols=42 Identities=26% Similarity=0.074 Sum_probs=29.5
Q ss_pred HHHHHHHhcCCceEEEEeCCCCh-------hhhhhHHHHHHhCCCcEEE
Q 047379 74 KTVLRSLRTSKGKLIILSNNCPP-------LRKSEIEYYAMLAKVGVHH 115 (154)
Q Consensus 74 ~~VlkaIk~gkakLVIlA~Das~-------~~k~ki~~~c~~~~Vpvi~ 115 (154)
+.+.++|++.+.++|++..=.+| ...++|..+|+++++.++.
T Consensus 172 ~~l~~~l~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~ 220 (437)
T 3g0t_A 172 EKLESYLQTGQFCSIIYSNPNNPTWQCMTDEELRIIGELATKHDVIVIE 220 (437)
T ss_dssp HHHHHHHTTTCCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHhcCCceEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEE
Confidence 44556665677888887433222 2367788999999999996
No 133
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=27.23 E-value=1.1e+02 Score=23.60 Aligned_cols=40 Identities=18% Similarity=0.129 Sum_probs=25.9
Q ss_pred HHHHHHHHhcCC--ceEEEEeCCCChhhhhhHHHHHHhCCCcEEE
Q 047379 73 YKTVLRSLRTSK--GKLIILSNNCPPLRKSEIEYYAMLAKVGVHH 115 (154)
Q Consensus 73 ~~~VlkaIk~gk--akLVIlA~Das~~~k~ki~~~c~~~~Vpvi~ 115 (154)
...++++++++. ..++.+-+|-++. ....+|+++|||++.
T Consensus 14 l~ali~~~~~~~~~~~i~~Vis~~~~~---~~~~~A~~~gIp~~~ 55 (212)
T 1jkx_A 14 LQAIIDACKTNKIKGTVRAVFSNKADA---FGLERARQAGIATHT 55 (212)
T ss_dssp HHHHHHHHHTTSSSSEEEEEEESCTTC---HHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHcCCCCceEEEEEeCCCch---HHHHHHHHcCCcEEE
Confidence 455677777774 4555555553322 246789999999985
No 134
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Probab=27.02 E-value=69 Score=26.05 Aligned_cols=42 Identities=14% Similarity=0.047 Sum_probs=29.9
Q ss_pred HHHHHHHhc---CCceEEEEeCCCC--------hhhhhhHHHHHHhCCCcEEE
Q 047379 74 KTVLRSLRT---SKGKLIILSNNCP--------PLRKSEIEYYAMLAKVGVHH 115 (154)
Q Consensus 74 ~~VlkaIk~---gkakLVIlA~Das--------~~~k~ki~~~c~~~~Vpvi~ 115 (154)
+.+.++|.. ++.++|++..=.+ ....+.|..+|+++|++++.
T Consensus 170 ~~le~~i~~~~~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~ 222 (467)
T 1ax4_A 170 KKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVM 222 (467)
T ss_dssp HHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHhcCCCCeeEEEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEE
Confidence 455666764 3688888854222 23457899999999999996
No 135
>3uhf_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni} PDB: 3uho_A* 3uhp_A
Probab=27.01 E-value=65 Score=26.01 Aligned_cols=36 Identities=14% Similarity=0.102 Sum_probs=25.7
Q ss_pred HHHHhcCCceEEEEeCCCChhh-hhhHHHHHHhCCCcEEE
Q 047379 77 LRSLRTSKGKLIILSNNCPPLR-KSEIEYYAMLAKVGVHH 115 (154)
Q Consensus 77 lkaIk~gkakLVIlA~Das~~~-k~ki~~~c~~~~Vpvi~ 115 (154)
.+.+.+..+++++||.|..... .+.++ +..+||++.
T Consensus 79 ~~~L~~~g~d~IVIACNTa~~~al~~lr---~~~~iPvig 115 (274)
T 3uhf_A 79 LDFFEQFQIDMLIIACNTASAYALDALR---AKAHFPVYG 115 (274)
T ss_dssp HHHHTTSCCSEEEECCHHHHHHSHHHHH---HHCSSCEEC
T ss_pred HHHHHHCCCCEEEEeCCChhHHHHHHHH---HhcCCCEEc
Confidence 3456667799999999887644 34444 556899985
No 136
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Probab=26.72 E-value=47 Score=25.89 Aligned_cols=43 Identities=12% Similarity=-0.007 Sum_probs=31.9
Q ss_pred HHHHHHHHhcCCceEEEEeCCCChh----hhhhHHHHHHhCCCcEEE
Q 047379 73 YKTVLRSLRTSKGKLIILSNNCPPL----RKSEIEYYAMLAKVGVHH 115 (154)
Q Consensus 73 ~~~VlkaIk~gkakLVIlA~Das~~----~k~ki~~~c~~~~Vpvi~ 115 (154)
.+.+.++|...+.++|++..--+|. ..+.|..+|++++++++.
T Consensus 137 ~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~ 183 (393)
T 3kgw_A 137 LQEVEEGLAQHKPVLLFLVHGESSTGVVQPLDGFGELCHRYQCLLLV 183 (393)
T ss_dssp HHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEE
T ss_pred HHHHHHHHhhCCCcEEEEeccCCcchhhccHHHHHHHHHHcCCEEEE
Confidence 4667777876568888777643332 258899999999999995
No 137
>4f82_A Thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Burkholderia cenocepacia}
Probab=26.61 E-value=1.6e+02 Score=21.95 Aligned_cols=48 Identities=15% Similarity=0.066 Sum_probs=28.9
Q ss_pred HHHHHhcCCc-eEEEEeCCCChhhhhhHHHHHHhCC----CcEEEecCCHHHHHhhhCC
Q 047379 76 VLRSLRTSKG-KLIILSNNCPPLRKSEIEYYAMLAK----VGVHHYNGNNVDLGTACGK 129 (154)
Q Consensus 76 VlkaIk~gka-kLVIlA~Das~~~k~ki~~~c~~~~----Vpvi~~~~tkeELG~a~Gk 129 (154)
..+.+++..+ .++-|+.|... . ...+++.++ +|++. . ...+++++.|.
T Consensus 74 ~~~ef~~~g~d~VigIS~D~~~-~---~~~f~~~~~l~~~f~lLs-D-~~~~va~ayGv 126 (176)
T 4f82_A 74 HAEQLRAAGIDEIWCVSVNDAF-V---MGAWGRDLHTAGKVRMMA-D-GSAAFTHALGL 126 (176)
T ss_dssp HHHHHHHTTCCEEEEEESSCHH-H---HHHHHHHTTCTTTSEEEE-C-TTCHHHHHHTC
T ss_pred HHHHHHhCCCCEEEEEeCCCHH-H---HHHHHHHhCCCCCceEEE-c-CchHHHHHhCC
Confidence 3444554457 88889998543 3 344455554 56663 3 34688888775
No 138
>2jli_A YSCU, YOP proteins translocation protein; cell membrane, transmembrane, protein transport, type III secretion system, plasmid, membrane; 1.13A {Yersinia pestis}
Probab=26.49 E-value=38 Score=24.63 Aligned_cols=26 Identities=15% Similarity=0.120 Sum_probs=20.5
Q ss_pred hhhhHHHHHHhCCCcEEEecCCHHHHHhhh
Q 047379 98 RKSEIEYYAMLAKVGVHHYNGNNVDLGTAC 127 (154)
Q Consensus 98 ~k~ki~~~c~~~~Vpvi~~~~tkeELG~a~ 127 (154)
...+|..+|+++|||+++ ...|.+++
T Consensus 72 ~A~~I~~~A~e~~VPi~e----~~~LAr~L 97 (123)
T 2jli_A 72 QVQTVRKIAEEEGVPILQ----RIPLARAL 97 (123)
T ss_dssp HHHHHHHHHHHHTCCEEE----CHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEe----CHHHHHHH
Confidence 458899999999999997 34566555
No 139
>3b1s_B Flagellar biosynthetic protein FLHB; type III secretion system, protein transport, MEMB protein; 2.55A {Aquifex aeolicus}
Probab=32.35 E-value=14 Score=25.35 Aligned_cols=28 Identities=18% Similarity=-0.025 Sum_probs=21.4
Q ss_pred hhhhhHHHHHHhCCCcEEEecCCHHHHHhhhC
Q 047379 97 LRKSEIEYYAMLAKVGVHHYNGNNVDLGTACG 128 (154)
Q Consensus 97 ~~k~ki~~~c~~~~Vpvi~~~~tkeELG~a~G 128 (154)
....+|...|+++|||+++ ...|.+++-
T Consensus 27 ~~A~~I~e~A~e~~VPi~e----~~~LAr~Ly 54 (87)
T 3b1s_B 27 TIAQKIVEIAENYSIPVVR----KPELARALY 54 (87)
Confidence 4678899999999999997 345555554
No 140
>2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A {Bacillus anthracis}
Probab=26.34 E-value=79 Score=24.84 Aligned_cols=37 Identities=14% Similarity=0.083 Sum_probs=25.8
Q ss_pred HHHHHhcCCceEEEEeCCCChh-hhhhHHHHHHhCCCcEEE
Q 047379 76 VLRSLRTSKGKLIILSNNCPPL-RKSEIEYYAMLAKVGVHH 115 (154)
Q Consensus 76 VlkaIk~gkakLVIlA~Das~~-~k~ki~~~c~~~~Vpvi~ 115 (154)
..+.+.+..++++++|.+.... ..+. +-+..+||++.
T Consensus 57 ~~~~L~~~g~d~iviaCNTas~~~l~~---lr~~~~iPvig 94 (267)
T 2gzm_A 57 MTEHLLDLNIKMLVIACNTATAVVLEE---MQKQLPIPVVG 94 (267)
T ss_dssp HHHHHHTTTCSEEEECCHHHHHHHHHH---HHHHCSSCEEE
T ss_pred HHHHHHHCCCCEEEEeCchhhHHHHHH---HHHhCCCCEEe
Confidence 3455556669999999988764 3343 44567899985
No 141
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Probab=26.12 E-value=53 Score=25.46 Aligned_cols=43 Identities=14% Similarity=-0.040 Sum_probs=32.3
Q ss_pred HHHHHHHHhcCCceEEEEeCCCChh----hhhhHHHHHHhCCCcEEE
Q 047379 73 YKTVLRSLRTSKGKLIILSNNCPPL----RKSEIEYYAMLAKVGVHH 115 (154)
Q Consensus 73 ~~~VlkaIk~gkakLVIlA~Das~~----~k~ki~~~c~~~~Vpvi~ 115 (154)
.+.+.++|...+.++|++..=.+|. -.+.|..+|++++++++.
T Consensus 116 ~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~ 162 (384)
T 3zrp_A 116 PGEVEEEVRKSEYKLVALTHVETSTGVREPVKDVINKIRKYVELIVV 162 (384)
T ss_dssp HHHHHHHHHHSCEEEEEEESEETTTTEECCHHHHHHHHGGGEEEEEE
T ss_pred HHHHHHHHHhCCCcEEEEeCCCCCCceECcHHHHHHHHHhcCCEEEE
Confidence 4667788877678888887543332 257899999999999996
No 142
>3bzs_A ESCU; auto cleavage protein, intein, T3SS, TTSS, asparagine cycliz membrane, membrane protein, protein transport; 1.48A {Escherichia coli} PDB: 3bzr_A 3bzp_A 3bzt_A 3c03_A
Probab=26.11 E-value=38 Score=25.06 Aligned_cols=26 Identities=19% Similarity=0.199 Sum_probs=20.6
Q ss_pred hhhhHHHHHHhCCCcEEEecCCHHHHHhhh
Q 047379 98 RKSEIEYYAMLAKVGVHHYNGNNVDLGTAC 127 (154)
Q Consensus 98 ~k~ki~~~c~~~~Vpvi~~~~tkeELG~a~ 127 (154)
...+|..+|+++|||+++ ...|.+++
T Consensus 82 ~A~~I~e~A~e~gVPi~e----~~~LAr~L 107 (137)
T 3bzs_A 82 KALQIIKLAELYDIPVIE----DIPLARSL 107 (137)
T ss_dssp HHHHHHHHHHHHTCCEEE----CHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEe----CHHHHHHH
Confidence 568899999999999997 34565555
No 143
>1zuw_A Glutamate racemase 1; (R)-glutamate, peptidoglycan biosynthesi isomerase; HET: DGL; 1.75A {Bacillus subtilis}
Probab=26.10 E-value=73 Score=25.22 Aligned_cols=39 Identities=10% Similarity=0.076 Sum_probs=26.3
Q ss_pred HHHHHHhc-CCceEEEEeCCCChhhhhhHHHHHHhCCCcEEE
Q 047379 75 TVLRSLRT-SKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHH 115 (154)
Q Consensus 75 ~VlkaIk~-gkakLVIlA~Das~~~k~ki~~~c~~~~Vpvi~ 115 (154)
+..+.+.+ ..+++|++|.|...... +..+-+..+||++.
T Consensus 56 ~~~~~L~~~~g~d~iViACNTas~~~--l~~lr~~~~iPVig 95 (272)
T 1zuw_A 56 ELTNYLLENHHIKMLVIACNTATAIA--LDDIQRSVGIPVVG 95 (272)
T ss_dssp HHHHHHHHHSCCSEEEECCHHHHHHH--HHHHHHHCSSCEEE
T ss_pred HHHHHHHhhcCCCEEEEeCchhhHHH--HHHHHHHCCCCEEc
Confidence 34555555 66999999998876421 33344567899985
No 144
>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}
Probab=25.55 E-value=1.1e+02 Score=20.48 Aligned_cols=47 Identities=4% Similarity=-0.128 Sum_probs=28.2
Q ss_pred CceEEEEeCCCC---hhhhhhHHHHHHhCCCcEEEecCCHHH------HHhhhCCc
Q 047379 84 KGKLIILSNNCP---PLRKSEIEYYAMLAKVGVHHYNGNNVD------LGTACGKY 130 (154)
Q Consensus 84 kakLVIlA~Das---~~~k~ki~~~c~~~~Vpvi~~~~tkeE------LG~a~Gk~ 130 (154)
.+.+|-+..|.. ++....+..+.+.+++++-.+.....+ +.+..|..
T Consensus 64 ~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~v~ 119 (160)
T 3lor_A 64 QVQVIGLHSVFEHHDVMTPEALKVFIDEFGIKFPVAVDMPREGQRIPSTMKKYRLE 119 (160)
T ss_dssp TEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEECCCTTCSSCHHHHHTTCC
T ss_pred CcEEEEEeccccccccCCHHHHHHHHHHcCCCCcEEECCccccchhhhHHHhcccC
Confidence 367777777632 245677777778887654322233333 77777753
No 145
>3pxv_A Nitroreductase; flavoprotein, FMN-dependent, joint center for structural genomics, protein structure initiative, PSI-biology; HET: MSE FMN; 2.30A {Desulfitobacterium hafniense}
Probab=25.34 E-value=1.9e+02 Score=20.67 Aligned_cols=98 Identities=8% Similarity=0.028 Sum_probs=58.0
Q ss_pred HHHHhhhhhhhhhhhhhhHH-HHHHHHHHHHHHh---CC------ceecHHHHHHHHh----------------------
Q 047379 34 FFGATKQSKMVTSKKTKKTH-ESINNRLALVMKS---GK------YTLGYKTVLRSLR---------------------- 81 (154)
Q Consensus 34 ~~~a~~~~~~~~~~k~~~~~-~kil~lLglA~rA---Gk------lv~G~~~VlkaIk---------------------- 81 (154)
+..++++|.=.|.|+.+.+. +.|..+|..|+.| ++ +++-.++.++.|.
T Consensus 6 ~~~~i~~RrSvR~f~~~~v~~e~l~~il~aa~~APs~~n~qpw~f~vv~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 85 (189)
T 3pxv_A 6 TLKVIAERYSCRDFKNEMPSDELLQAIAEAAIQAPSGMNRQAWRVIVVKNKELMQEMEAEGLAYLAGMEDQSSYNRIMER 85 (189)
T ss_dssp HHHHHHHCCCCCCBCSCCCCHHHHHHHHHHHTTCCCGGGCCCBCEEEECCHHHHHHHHHHHHHHHHTSSSCHHHHHHHHT
T ss_pred HHHHHHhCeehhcCCCCCCCHHHHHHHHHHHHhCCCCCCCCCeEEEEEcCHHHHHHHHHHHHHHHHhcccCcHHHHHHhc
Confidence 45677777777888733333 5666666666654 11 2333323333221
Q ss_pred -----cCCceEEEEeCCCChhh---------hhhHHHHHHhCCCcEEEecC----------CHHHHHhhhCCccc
Q 047379 82 -----TSKGKLIILSNNCPPLR---------KSEIEYYAMLAKVGVHHYNG----------NNVDLGTACGKYFR 132 (154)
Q Consensus 82 -----~gkakLVIlA~Das~~~---------k~ki~~~c~~~~Vpvi~~~~----------tkeELG~a~Gk~~~ 132 (154)
.+-..++++..|.+... ...+.-.|...|+-.+ +.+ +.+++-.++|.+..
T Consensus 86 ~~~~~~~Ap~~ivv~~~~~~~~~~~~d~g~a~~nl~LaA~~~Glgs~-~~~~~~~~~~~~~~~~~~~~~l~lp~~ 159 (189)
T 3pxv_A 86 GGRLFYGAPCMIVVPIDPTQYGPALVDCGILCQTIALAATSLGIANI-MCGYTGLAFASGLRAEEFSKRLGFPEG 159 (189)
T ss_dssp TSCTTTTCSEEEEEEECGGGHHHHHHHHHHHHHHHHHHHHHTTCEEE-ECGGGGGGGTTSTTHHHHHHHHTCCTT
T ss_pred ccCccCCCCEEEEEEecCCCCcchhhhHHHHHHHHHHHHHHCCCcee-hhccHHHhhccccchHHHHHHcCcCCC
Confidence 12355677777765432 2556677788888777 343 67899999998754
No 146
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=25.10 E-value=1.2e+02 Score=23.32 Aligned_cols=42 Identities=7% Similarity=0.003 Sum_probs=30.0
Q ss_pred HHHHHHHhc----CCceEEEEeCCCChh----hhhhHHHHHHhCCCcEEE
Q 047379 74 KTVLRSLRT----SKGKLIILSNNCPPL----RKSEIEYYAMLAKVGVHH 115 (154)
Q Consensus 74 ~~VlkaIk~----gkakLVIlA~Das~~----~k~ki~~~c~~~~Vpvi~ 115 (154)
+.+.++|.+ ++.++|++..=.+|. ..+.|..+|++++++++.
T Consensus 133 ~~l~~~l~~~~~~~~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~li~ 182 (371)
T 2e7j_A 133 ENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLV 182 (371)
T ss_dssp HHHHHHHHHHTTTSCEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEE
T ss_pred HHHHHHHHhhcccCCeEEEEEECCCCCCcccCCHHHHHHHHHHcCCeEEE
Confidence 456666653 568888876653442 248899999999999985
No 147
>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=25.09 E-value=59 Score=25.75 Aligned_cols=43 Identities=16% Similarity=0.111 Sum_probs=30.3
Q ss_pred HHHHHHHHhcCCceEEEEeC-CCC-hhhhhhHHHHHHhCCCcEEE
Q 047379 73 YKTVLRSLRTSKGKLIILSN-NCP-PLRKSEIEYYAMLAKVGVHH 115 (154)
Q Consensus 73 ~~~VlkaIk~gkakLVIlA~-Das-~~~k~ki~~~c~~~~Vpvi~ 115 (154)
.+.+.++|.+.+.++|++.. +.+ ....+.|..+|++++++++.
T Consensus 153 ~~~l~~~i~~~~~~~v~~~~~~~G~~~~l~~i~~l~~~~~~~li~ 197 (417)
T 3n0l_A 153 YEKVREIAKKEKPKLIVCGASAYARVIDFAKFREIADEIGAYLFA 197 (417)
T ss_dssp HHHHHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHhcCCeEEEECCcccCccCCHHHHHHHHHHcCCEEEE
Confidence 45667777755677887643 221 12368899999999999995
No 148
>2jlj_A YSCU, YOP proteins translocation protein U; cell membrane, transmembrane, yersinia pesits, protein trans type III secretion system, membrane; 1.3A {Yersinia pestis} PDB: 2jlh_A* 2v5g_A 2w0r_A
Probab=25.09 E-value=40 Score=25.11 Aligned_cols=26 Identities=15% Similarity=0.120 Sum_probs=20.5
Q ss_pred hhhhHHHHHHhCCCcEEEecCCHHHHHhhh
Q 047379 98 RKSEIEYYAMLAKVGVHHYNGNNVDLGTAC 127 (154)
Q Consensus 98 ~k~ki~~~c~~~~Vpvi~~~~tkeELG~a~ 127 (154)
...+|..+|+++|||+++ ...|.+++
T Consensus 81 ~A~~I~e~A~e~gVPi~e----~~~LAr~L 106 (144)
T 2jlj_A 81 QVQTVRKIAEEEGVPILQ----RIPLARAL 106 (144)
T ss_dssp HHHHHHHHHHHHTCCEEE----CHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEe----CHHHHHHH
Confidence 468899999999999997 34565555
No 149
>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}
Probab=25.06 E-value=57 Score=26.89 Aligned_cols=45 Identities=16% Similarity=0.031 Sum_probs=31.8
Q ss_pred HHHHHHHHhcCCceEEEEeCCCCh--hhhhhHHHHHHhCCCcEEEecC
Q 047379 73 YKTVLRSLRTSKGKLIILSNNCPP--LRKSEIEYYAMLAKVGVHHYNG 118 (154)
Q Consensus 73 ~~~VlkaIk~gkakLVIlA~Das~--~~k~ki~~~c~~~~Vpvi~~~~ 118 (154)
.+.+.++++..+.++|++..-..+ .-.+.|..+|+++++.++. +.
T Consensus 174 ~~~l~~~i~~~~~~~i~~~~~~~~~~~~l~~i~~l~~~~g~lli~-De 220 (447)
T 3h7f_A 174 MDAVRATALEFRPKVIIAGWSAYPRVLDFAAFRSIADEVGAKLLV-DM 220 (447)
T ss_dssp HHHHHHHHHHHCCSEEEEECSSCCSCCCHHHHHHHHHHHTCEEEE-EC
T ss_pred HHHHHHHHHhcCCeEEEEcCCCCCCccCHHHHHHHHHHcCCEEEE-EC
Confidence 356667776666788888433333 2458899999999999995 44
No 150
>3rjt_A Lipolytic protein G-D-S-L family; PSI-biology, midwest center for structural genomics, MCSG, H; 1.50A {Alicyclobacillus acidocaldarius subsp}
Probab=24.97 E-value=40 Score=23.87 Aligned_cols=45 Identities=11% Similarity=0.081 Sum_probs=29.7
Q ss_pred ecHHHHHHHHhcCCceEEEEeCC-CCh-----------hhhhhHHHHHHhCCCcEEE
Q 047379 71 LGYKTVLRSLRTSKGKLIILSNN-CPP-----------LRKSEIEYYAMLAKVGVHH 115 (154)
Q Consensus 71 ~G~~~VlkaIk~gkakLVIlA~D-as~-----------~~k~ki~~~c~~~~Vpvi~ 115 (154)
...++.++.+++..+++|++..- .++ ..-+.+..+|++++|+++.
T Consensus 117 ~~l~~~i~~~~~~~~~vil~~p~~~~~~~~~~~~~~~~~~n~~~~~~a~~~~~~~vD 173 (216)
T 3rjt_A 117 DTLRHLVATTKPRVREMFLLSPFYLEPNRSDPMRKTVDAYIEAMRDVAASEHVPFVD 173 (216)
T ss_dssp HHHHHHHHHHGGGSSEEEEECCCCCCCCTTSHHHHHHHHHHHHHHHHHHHHTCCEEC
T ss_pred HHHHHHHHHHHhcCCeEEEECCCcCCCCcchHHHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 34566777787777888888521 111 1235567789999999985
No 151
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*
Probab=24.92 E-value=69 Score=24.40 Aligned_cols=43 Identities=16% Similarity=0.107 Sum_probs=30.6
Q ss_pred HHHHHHHHhcCCceEEEEeCCCChh----hhhhHHHHHHhCCCcEEE
Q 047379 73 YKTVLRSLRTSKGKLIILSNNCPPL----RKSEIEYYAMLAKVGVHH 115 (154)
Q Consensus 73 ~~~VlkaIk~gkakLVIlA~Das~~----~k~ki~~~c~~~~Vpvi~ 115 (154)
.+.+.+.|...+.++|++..=.+|. ..+.|..+|++++++++.
T Consensus 113 ~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~ 159 (353)
T 2yrr_A 113 PEAVARALKRRRYRMVALVHGETSTGVLNPAEAIGALAKEAGALFFL 159 (353)
T ss_dssp HHHHHHHHHHSCCSEEEEESEETTTTEECCHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHhCCCCEEEEEccCCCcceecCHHHHHHHHHHcCCeEEE
Confidence 3566777765467888876543332 247899999999999985
No 152
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=24.81 E-value=1e+02 Score=22.05 Aligned_cols=47 Identities=13% Similarity=0.017 Sum_probs=26.8
Q ss_pred HHHHHHhcCCceEEEEeCCCChhh--hh---hHHHHHHhCCCcEEEecCCHH
Q 047379 75 TVLRSLRTSKGKLIILSNNCPPLR--KS---EIEYYAMLAKVGVHHYNGNNV 121 (154)
Q Consensus 75 ~VlkaIk~gkakLVIlA~Das~~~--k~---ki~~~c~~~~Vpvi~~~~tke 121 (154)
.+++.+++.++-+||++.|..... .. .+...-...++|++...|+-+
T Consensus 23 ~~~~~~~~~~~D~vi~~GDl~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD 74 (228)
T 1uf3_A 23 KFVKLAPDTGADAIALIGNLMPKAAKSRDYAAFFRILSEAHLPTAYVPGPQD 74 (228)
T ss_dssp HHHTHHHHHTCSEEEEESCSSCTTCCHHHHHHHHHHHGGGCSCEEEECCTTS
T ss_pred HHHHHHhhcCCCEEEECCCCCCCCCCHHHHHHHHHHHHhcCCcEEEECCCCC
Confidence 344445444688999999986543 11 232333345788875445543
No 153
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=24.76 E-value=1.6e+02 Score=21.91 Aligned_cols=37 Identities=16% Similarity=0.117 Sum_probs=21.0
Q ss_pred HHHHHHhcCCceEEEEeCCCChhhhhhHHHHHHhCCCcEEE
Q 047379 75 TVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHH 115 (154)
Q Consensus 75 ~VlkaIk~gkakLVIlA~Das~~~k~ki~~~c~~~~Vpvi~ 115 (154)
+.++.+...++.-||+..... ......+...+||++.
T Consensus 54 ~~~~~l~~~~vdgiIi~~~~~----~~~~~~l~~~~iPvV~ 90 (276)
T 3jy6_A 54 TLLRAIGSRGFDGLILQSFSN----PQTVQEILHQQMPVVS 90 (276)
T ss_dssp HHHHHHHTTTCSEEEEESSCC----HHHHHHHHTTSSCEEE
T ss_pred HHHHHHHhCCCCEEEEecCCc----HHHHHHHHHCCCCEEE
Confidence 455556666665555554333 3344455667888884
No 154
>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*
Probab=24.67 E-value=77 Score=25.28 Aligned_cols=50 Identities=8% Similarity=0.086 Sum_probs=32.5
Q ss_pred HHHHHHHhc----CCceEEEEeC---CC-----ChhhhhhHHHHHHhCCCcEEEecCCHHHHH
Q 047379 74 KTVLRSLRT----SKGKLIILSN---NC-----PPLRKSEIEYYAMLAKVGVHHYNGNNVDLG 124 (154)
Q Consensus 74 ~~VlkaIk~----gkakLVIlA~---Da-----s~~~k~ki~~~c~~~~Vpvi~~~~tkeELG 124 (154)
+.+.++|++ .+.++|++-. +. ++...+.|..+|++++++++. +..-.++|
T Consensus 185 ~~l~~~l~~~~~~~~~~~v~~~p~~~ntG~~~~~~~~l~~l~~l~~~~~~~li~-De~~~~~~ 246 (426)
T 1sff_A 185 ASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIA-DEVQSGAG 246 (426)
T ss_dssp HHHHHHHHHTCCGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEE-ECTTTTTT
T ss_pred HHHHHHHHhccCCCceEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEE-echhhccC
Confidence 445566654 5677887732 22 223478999999999999996 54433444
No 155
>3e39_A Putative nitroreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE FMN PGE; 1.70A {Desulfovibrio desulfuricans subsp}
Probab=24.57 E-value=1.1e+02 Score=21.91 Aligned_cols=105 Identities=12% Similarity=0.064 Sum_probs=62.9
Q ss_pred HHHHhhhhhhhhhhhhhhHH-HHHHHHHHHHHHh---CC------ceecHHHHH-HHHhc---------CCceEEEEeCC
Q 047379 34 FFGATKQSKMVTSKKTKKTH-ESINNRLALVMKS---GK------YTLGYKTVL-RSLRT---------SKGKLIILSNN 93 (154)
Q Consensus 34 ~~~a~~~~~~~~~~k~~~~~-~kil~lLglA~rA---Gk------lv~G~~~Vl-kaIk~---------gkakLVIlA~D 93 (154)
+..++++|.=.|.|+.+.+. +.+..+|..|+.| ++ +++-.++.+ +.|.. +-..++++..|
T Consensus 8 ~~~~i~~RrSvR~f~~~~v~~e~l~~il~aa~~aPs~~n~qp~~~~vv~~~~~~~~~l~~~~~~~~~~~~Ap~~iv~~~~ 87 (178)
T 3e39_A 8 VLQAIRQRRSIRRYTDEAVSDEAVRLILEAGIWAPSGLNNQPCRFLVIRADDPRCDILAAHTRYGHIVRGAKVIILVFLD 87 (178)
T ss_dssp HHHHHHHCCBCCCBCSCCCCHHHHHHHHHHHHTSCCGGGCCCEEEEEEETTSTHHHHHHTTCSCHHHHHHCSEEEEEEEE
T ss_pred HHHHHHhCcchhcCCCCCCCHHHHHHHHHHHHhCCCCCCCCCeEEEEEECHHHHHHHHHHhhhcchhhcCCCEEEEEEEc
Confidence 45677777778888744343 6777788877764 21 233333333 44432 22445666666
Q ss_pred CChhh------------hhhHHHHHHhCCCcEEEecC----CHHHHHhhhCCccc-EEEEEEe
Q 047379 94 CPPLR------------KSEIEYYAMLAKVGVHHYNG----NNVDLGTACGKYFR-VSCLSII 139 (154)
Q Consensus 94 as~~~------------k~ki~~~c~~~~Vpvi~~~~----tkeELG~a~Gk~~~-vsvvaI~ 139 (154)
.+... ...+.-.|...|+-.+ +.+ +.+++-.++|.+.. -.+++++
T Consensus 88 ~~~~~~~~~~~~d~g~a~~nl~LaA~~~Glgs~-~~~~~~~~~~~~~~~l~lp~~~~~~~~~i 149 (178)
T 3e39_A 88 REAMYNEVKDHQAAGAAVQNMLLAAHALQLGAV-WLGEIINQAATLLPALALDPARLSFEAAI 149 (178)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHHHHHHTTCEEE-EECGGGGGHHHHHHHTTCCTTTEEEEEEE
T ss_pred cccccccccHHHHHHHHHHHHHHHHHHcCCeEE-EecCcccchHHHHHHhCcCCCceEEEEEE
Confidence 54321 3555677788888776 344 67899999998755 3334443
No 156
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=24.23 E-value=34 Score=32.59 Aligned_cols=57 Identities=14% Similarity=0.051 Sum_probs=41.8
Q ss_pred ecHHHHHHHHhcCCceEEEEeCCCChh--hhhhHHHHHHhCCCcEEEecCCHHHHHhhh
Q 047379 71 LGYKTVLRSLRTSKGKLIILSNNCPPL--RKSEIEYYAMLAKVGVHHYNGNNVDLGTAC 127 (154)
Q Consensus 71 ~G~~~VlkaIk~gkakLVIlA~Das~~--~k~ki~~~c~~~~Vpvi~~~~tkeELG~a~ 127 (154)
-|...+++.|++|++.|||-..+-... ---.|+..|-.++|||++...+-..+-.++
T Consensus 996 ~g~p~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~t~~~~~~~~~~~~ 1054 (1073)
T 1a9x_A 996 EGRPHIQDRIKNGEYTYIINTTSGRRAIEDSRVIRRSALQYKVHYDTTLNGGFATAMAL 1054 (1073)
T ss_dssp TCSSBHHHHHHHTCCSEEEECCCSHHHHHHTHHHHHHHHHTTCEEESSHHHHHHHHHHH
T ss_pred CCCccHHHHHHcCCeEEEEECCCCcccccchHHHHHHHHHhCCCEEccHHHHHHHHHHH
Confidence 467789999999999999987765222 235788999999999996433444444544
No 157
>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10
Probab=24.18 E-value=1.1e+02 Score=21.34 Aligned_cols=44 Identities=5% Similarity=0.047 Sum_probs=26.6
Q ss_pred cCCceEEEEeCCCChhhhhhHHHHHHhCCC---cEEEecCCHHHHHhhhCC
Q 047379 82 TSKGKLIILSNNCPPLRKSEIEYYAMLAKV---GVHHYNGNNVDLGTACGK 129 (154)
Q Consensus 82 ~gkakLVIlA~Das~~~k~ki~~~c~~~~V---pvi~~~~tkeELG~a~Gk 129 (154)
...+.+|.|..|.+ ....+..+++.+++ |++. ....++.+.+|.
T Consensus 91 ~~~~~vv~v~~d~~--~~~~~~~~~~~~~~~~~~~~~--d~~~~~~~~~~~ 137 (186)
T 1jfu_A 91 GPNFEVVAINIDTR--DPEKPKTFLKEANLTRLGYFN--DQKAKVFQDLKA 137 (186)
T ss_dssp BTTEEEEEEECCCS--CTTHHHHHHHHTTCCTTCCEE--CTTCHHHHHHHT
T ss_pred cCCcEEEEEECCCC--CHHHHHHHHHHcCCCCCceEE--CCcchHHHHhcc
Confidence 34577888888753 23445566677664 5552 344567777664
No 158
>1wn2_A Peptidyl-tRNA hydrolase; riken structural genomics/proteomics initiative, structural genomics; 1.20A {Pyrococcus horikoshii} PDB: 2d3k_A
Probab=23.97 E-value=1.9e+02 Score=20.35 Aligned_cols=70 Identities=11% Similarity=0.082 Sum_probs=43.3
Q ss_pred HHHHHHHhcCCceEEEEeCCCChhhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCC-cccEEEEEEeCcCchHHHhcCC
Q 047379 74 KTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGK-YFRVSCLSIIDPGDSDIIKSLP 151 (154)
Q Consensus 74 ~~VlkaIk~gkakLVIlA~Das~~~k~ki~~~c~~~~Vpvi~~~~tkeELG~a~Gk-~~~vsvvaI~D~GfA~~i~~~~ 151 (154)
+........|..+.|+=+.| ++....+...++..++|+.. +-+. |+ .-. +....|+|| -|+..+.|..++
T Consensus 45 ~~~~~W~~~g~~Kvvlk~~~--e~el~~l~~~a~~~gl~~~~-i~DA---G~-Tei~~gt~Tvlai-gP~~~~~vd~it 115 (121)
T 1wn2_A 45 EWFEAWFREGQKKVVVKVES--EEELFKLKAEAEKLGLPNAL-IRDA---GL-TEIPPGTVTVLAV-GPAPEEIVDKVT 115 (121)
T ss_dssp HHHHHHHHTTCCEEEEEESS--HHHHHHHHHHHHHTTCCEEE-EECT---TC-TTSCTTCEEEEEE-EEEEHHHHHHHH
T ss_pred HHHHHHHHCCCcEEEEecCC--HHHHHHHHHHHHHCCCCEEE-EEcC---Cc-cccCCCCEEEEEe-ccCCHHHHHHhc
Confidence 44555667788888887765 45567788888999999653 3222 11 001 222346887 666666665543
No 159
>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}
Probab=23.94 E-value=1.7e+02 Score=19.64 Aligned_cols=44 Identities=7% Similarity=-0.244 Sum_probs=26.8
Q ss_pred CceEEEEeCCCChhhhhhHHHHHHhCCCcEEEecCC---HHHHHhhhCCc
Q 047379 84 KGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGN---NVDLGTACGKY 130 (154)
Q Consensus 84 kakLVIlA~Das~~~k~ki~~~c~~~~Vpvi~~~~t---keELG~a~Gk~ 130 (154)
.+.++.+..|.++. .+..+.+.+++++..+... ..+|.+..|..
T Consensus 62 ~~~vv~v~~d~~~~---~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~ 108 (152)
T 2lrn_A 62 GFTIYGVSTDRREE---DWKKAIEEDKSYWNQVLLQKDDVKDVLESYCIV 108 (152)
T ss_dssp TEEEEEEECCSCHH---HHHHHHHHHTCCSEEEEECHHHHHHHHHHTTCC
T ss_pred CeEEEEEEccCCHH---HHHHHHHHhCCCCeEEecccchhHHHHHHhCCC
Confidence 37788888885543 3444455555555432344 57888888854
No 160
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=23.84 E-value=96 Score=24.73 Aligned_cols=49 Identities=18% Similarity=0.110 Sum_probs=28.5
Q ss_pred CCceecHHHHHHHHhcC-CceEE-EE----eCCCChhhhhhHHHHHHhCCCcEEE
Q 047379 67 GKYTLGYKTVLRSLRTS-KGKLI-IL----SNNCPPLRKSEIEYYAMLAKVGVHH 115 (154)
Q Consensus 67 Gklv~G~~~VlkaIk~g-kakLV-Il----A~Das~~~k~ki~~~c~~~~Vpvi~ 115 (154)
++.++-+.....++-+. -...+ +. -++.|+....++..+++.++|++|.
T Consensus 179 ~~~~v~~H~af~Yf~~~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if 233 (286)
T 3gi1_A 179 SKTFVTQHTAFSYLAKRFGLKQLGISGISPEQEPSPRQLKEIQDFVKEYNVKTIF 233 (286)
T ss_dssp CCEEEEEESCCHHHHHHTTCEEEEEECSCC---CCHHHHHHHHHHHHHTTCCEEE
T ss_pred CCEEEEECCchHHHHHHCCCeEeeccccCCCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 44444444466665322 12222 12 1356667788999999999999994
No 161
>3vi3_B Integrin beta-1; beta propeller fold, rossman fold, beta sandwich, fibronecti receptor, cell adhesion-immune system complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 3vi4_B*
Probab=23.83 E-value=1.7e+02 Score=25.64 Aligned_cols=85 Identities=11% Similarity=0.123 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHhCCc---eecHHHHHHHHh-------cCCceEEEEeCCCChhh--------------------------
Q 047379 55 SINNRLALVMKSGKY---TLGYKTVLRSLR-------TSKGKLIILSNNCPPLR-------------------------- 98 (154)
Q Consensus 55 kil~lLglA~rAGkl---v~G~~~VlkaIk-------~gkakLVIlA~Das~~~-------------------------- 98 (154)
.+.+.++-.+-+|++ ..|.+..+.++. +..-++||+++|++...
T Consensus 211 ~F~~~V~~~~isGn~D~PEgg~DAl~Qaavc~~~igWR~a~rllV~~TDa~fH~agDgkL~GIv~PNDg~CHL~~~~Yt~ 290 (454)
T 3vi3_B 211 VFNELVGKQRISGNLDSPEGGFDAIMQVAVCGSLIGWRNVTRLLVFSTDAGFHFAGDGKLGGIVLPNDGQCHLENNMYTM 290 (454)
T ss_dssp HHHHHHTTCCCCCCSSSSBCHHHHHHHHHHCHHHHTCCSSEEEEEEEESSCBCCTTTTGGGTCCSCCCCCCCEETTEECC
T ss_pred HHHHHHhhccccCCCcCCchhHHHHHHHhccccccCCccceEEEEEECCCCcCcCCCccccceecCCCCccEeCCCcccc
Confidence 333444433334443 456777777752 23678999999998752
Q ss_pred --------hhhHHHHHHhCCCcEEEecCCH------HHHHhhhCCcccEEEEEEeCcCch
Q 047379 99 --------KSEIEYYAMLAKVGVHHYNGNN------VDLGTACGKYFRVSCLSIIDPGDS 144 (154)
Q Consensus 99 --------k~ki~~~c~~~~Vpvi~~~~tk------eELG~a~Gk~~~vsvvaI~D~GfA 144 (154)
.-++.+...++||..| |.-|+ ++|...++.. .++++...-+
T Consensus 291 s~~~DYPSv~ql~~~l~e~nI~~I-FAVt~~~~~~Y~~L~~~ip~s----~vg~Ls~dSs 345 (454)
T 3vi3_B 291 SHYYDYPSIAHLVQKLSENNIQTI-FAVTEEFQPVYKELKNLIPKS----AVGTLSANSS 345 (454)
T ss_dssp TTTSCCCCHHHHHHHHHHTTEEEE-EEEEGGGHHHHHHHHHHSTTE----EEEEECTTCT
T ss_pred cccCCCCCHHHHHHHHHhcCCcEE-EEEcCccchHHHHHHHhCCCc----eeeEccccch
Confidence 3456677778898888 45444 5788888753 5788755433
No 162
>2oho_A Glutamate racemase; isomerase; 2.25A {Streptococcus pyogenes m1 gas} PDB: 2ohg_A 2ohv_A*
Probab=23.62 E-value=95 Score=24.44 Aligned_cols=36 Identities=19% Similarity=0.100 Sum_probs=23.8
Q ss_pred HHHhcCCceEEEEeCCCChhhhhhHHHHHHhCCCcEEE
Q 047379 78 RSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHH 115 (154)
Q Consensus 78 kaIk~gkakLVIlA~Das~~~k~ki~~~c~~~~Vpvi~ 115 (154)
+.+.+..++++++|.+...... +..+-+..+||++.
T Consensus 68 ~~L~~~g~d~iviaCNTas~~~--l~~lr~~~~iPvig 103 (273)
T 2oho_A 68 NFLLTQNVKMIVFACNTATAVA--WEEVKAALDIPVLG 103 (273)
T ss_dssp HHHHTTTCSEEEECCHHHHHHH--HHHHHHHCSSCEEE
T ss_pred HHHHHCCCCEEEEeCchHhHHH--HHHHHHhCCCCEEe
Confidence 3344556999999998776432 33344556899985
No 163
>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A*
Probab=23.60 E-value=98 Score=24.69 Aligned_cols=38 Identities=11% Similarity=0.020 Sum_probs=26.0
Q ss_pred HHHHHhcCCceEEEEeCCCChhhhhhHHHHHHhCCCcEEE
Q 047379 76 VLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHH 115 (154)
Q Consensus 76 VlkaIk~gkakLVIlA~Das~~~k~ki~~~c~~~~Vpvi~ 115 (154)
..+.+.+..++++++|.|...... +..+-+..+||++.
T Consensus 59 ~~~~L~~~g~~~IVIACNTa~~~a--l~~lr~~~~iPvig 96 (269)
T 3ist_A 59 MTNFLVDRGIKMLVIACNTATAAA--LYDIREKLDIPVIG 96 (269)
T ss_dssp HHHHHHHTTCSEEEECCHHHHHHH--HHHHHHHCSSCEEE
T ss_pred HHHHHHHCCCCEEEEeCCCccHHH--HHHHHHhcCCCEEe
Confidence 345555667999999998776531 33344567899995
No 164
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*
Probab=23.47 E-value=84 Score=28.86 Aligned_cols=65 Identities=6% Similarity=0.034 Sum_probs=43.6
Q ss_pred ecHHHHHHHH-------hcCCceEEEEeCCCChhh----------------------------------hhhHHHHHHhC
Q 047379 71 LGYKTVLRSL-------RTSKGKLIILSNNCPPLR----------------------------------KSEIEYYAMLA 109 (154)
Q Consensus 71 ~G~~~VlkaI-------k~gkakLVIlA~Das~~~----------------------------------k~ki~~~c~~~ 109 (154)
.|.+.++.++ .+.-.+|||+.+|++... ..++...-.++
T Consensus 213 ~g~dAl~qa~vc~~~igWr~a~rllV~~TDa~~H~agDg~l~gi~~pndg~Chl~~~~y~~s~~~DyPS~~ql~~~l~~~ 292 (687)
T 3k6s_B 213 GGLDAMMQVAACPEEIGWRNVTRLLVFATDDGFHFAGDGKLGAILTPNDGRCHLEDNLYKRSNEFDYPSVGQLAHKLAEN 292 (687)
T ss_dssp CHHHHHHHHTTCHHHHCCCSSCCEEEEECSSCCCCTTGGGGGTCCCCCCSCCCCSSSBCSSGGGSCCCCGGGHHHHHHHT
T ss_pred hHHHHHHHHhhcccccCCccceEEEEEECCCccccCCCccccceecCCCCccccCCCccccccccCCCCHHHHHHHHHHc
Confidence 3678888887 233689999999999651 34566666777
Q ss_pred CCcEEEecCCH------HHHHhhhCCcccEEEEEEeC
Q 047379 110 KVGVHHYNGNN------VDLGTACGKYFRVSCLSIID 140 (154)
Q Consensus 110 ~Vpvi~~~~tk------eELG~a~Gk~~~vsvvaI~D 140 (154)
+|..| |.-+. ++|...++.. .++++.
T Consensus 293 ~I~~i-favt~~~~~~y~~l~~~i~~s----~v~~L~ 324 (687)
T 3k6s_B 293 NIQPI-FAVTSRMVKTYEKLTEIIPKS----AVGELS 324 (687)
T ss_dssp TCBCC-EEECGGGHHHHHHHHHHSSSC----CEEECC
T ss_pred CCeEE-EEEeccchhhHHHHHhhcCCc----eeeeec
Confidence 88777 35444 4677777654 356654
No 165
>1je3_A EC005, hypothetical 8.6 kDa protein in AMYA-FLIE intergenic region; mixed alpha-beta structure, structural genomics; NMR {Escherichia coli} SCOP: d.68.3.3
Probab=23.34 E-value=40 Score=23.11 Aligned_cols=38 Identities=18% Similarity=0.050 Sum_probs=25.8
Q ss_pred HHHHHhcCC--ceEEEEeCCCChhhhhhHHHHHHhCCCcEEE
Q 047379 76 VLRSLRTSK--GKLIILSNNCPPLRKSEIEYYAMLAKVGVHH 115 (154)
Q Consensus 76 VlkaIk~gk--akLVIlA~Das~~~k~ki~~~c~~~~Vpvi~ 115 (154)
+.++|++=+ -.|.|++.|. ...+.|..+|+..|-.++.
T Consensus 44 tkkaL~~l~~Ge~L~Vl~dd~--~a~~dIp~~~~~~G~~v~~ 83 (97)
T 1je3_A 44 TLEAMPQLKKGEILEVVSDCP--QSINNIPLDARNHGYTVLD 83 (97)
T ss_dssp HHHHTTTCCSSCEEEEEEBCS--SSSCHHHHHHHHHTCSEEE
T ss_pred HHHHHHcCCCCCEEEEEECCc--chHHHHHHHHHHCCCEEEE
Confidence 445554422 2488888884 3467899999998877764
No 166
>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A
Probab=23.30 E-value=1.3e+02 Score=24.65 Aligned_cols=50 Identities=10% Similarity=-0.034 Sum_probs=32.9
Q ss_pred HHHHHHHhcCCceEEEEeCCC--------ChhhhhhHHHHHHhCCCcEEEecCCHHHHH
Q 047379 74 KTVLRSLRTSKGKLIILSNNC--------PPLRKSEIEYYAMLAKVGVHHYNGNNVDLG 124 (154)
Q Consensus 74 ~~VlkaIk~gkakLVIlA~Da--------s~~~k~ki~~~c~~~~Vpvi~~~~tkeELG 124 (154)
+.+.+.|+..+.++||+-..- ++...+.+..+|+++++++|. +..-..+|
T Consensus 202 ~~le~~l~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~-DEv~~g~g 259 (433)
T 1z7d_A 202 EALEEELKDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVA-DEVQTGLG 259 (433)
T ss_dssp HHHHHHHTSTTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEE-ECTTTTTT
T ss_pred HHHHHHhCCCCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEE-ecCccCCC
Confidence 455666655677777765332 223568999999999999995 54433343
No 167
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=23.12 E-value=93 Score=24.84 Aligned_cols=24 Identities=4% Similarity=-0.108 Sum_probs=20.2
Q ss_pred CCCChhhhhhHHHHHHhCCCcEEE
Q 047379 92 NNCPPLRKSEIEYYAMLAKVGVHH 115 (154)
Q Consensus 92 ~Das~~~k~ki~~~c~~~~Vpvi~ 115 (154)
++.|+....++..+++..+|++|.
T Consensus 219 ~eps~~~l~~l~~~ik~~~v~~If 242 (291)
T 1pq4_A 219 QEPSAQELKQLIDTAKENNLTMVF 242 (291)
T ss_dssp BCCCHHHHHHHHHHHHTTTCCEEE
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEE
Confidence 566777888999999999999984
No 168
>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli}
Probab=23.05 E-value=1.1e+02 Score=26.90 Aligned_cols=41 Identities=12% Similarity=0.067 Sum_probs=33.3
Q ss_pred HHHHHHHhcCCceEEEEeCCCChhhhhhHHHHHHhCCCcEEE
Q 047379 74 KTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHH 115 (154)
Q Consensus 74 ~~VlkaIk~gkakLVIlA~Das~~~k~ki~~~c~~~~Vpvi~ 115 (154)
+.+.+++++| +++||+++..+.....++...|+++++.++-
T Consensus 51 ~~v~e~~~~G-v~~viis~Gf~~~~~~~l~~~A~~~g~rliG 91 (480)
T 3dmy_A 51 ELANQALDRN-LNVMMFSDNVTLEDEIQLKTRAREKGLLVMG 91 (480)
T ss_dssp HHHHHHHHTT-CEEEECCCCCCHHHHHHHHHHHHHTTCCEEC
T ss_pred HHHHHHHhcC-CCEEEECCCCCHHHHHHHHHHHHHcCCEEEe
Confidence 4466677777 5689999999887788999999999998873
No 169
>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A
Probab=23.00 E-value=83 Score=22.29 Aligned_cols=30 Identities=7% Similarity=-0.072 Sum_probs=24.5
Q ss_pred CCceEEEEeCCCChhhhhhHHHHHHhCCCcE
Q 047379 83 SKGKLIILSNNCPPLRKSEIEYYAMLAKVGV 113 (154)
Q Consensus 83 gkakLVIlA~Das~~~k~ki~~~c~~~~Vpv 113 (154)
.++.+|.|+.|. .++.+.+..+++.++++.
T Consensus 63 ~~~~vv~is~d~-~d~~~~~~~~~~~~~~~~ 92 (170)
T 3me7_A 63 KDFWVITFTFDP-KDTLEDIKRFQKEYGIDG 92 (170)
T ss_dssp TTBEEEEEECCT-TCCHHHHHHHHHHTTCCS
T ss_pred CceEEEEEECCC-CCCHHHHHHHHHHcCCCC
Confidence 358899999997 678888899999998654
No 170
>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A
Probab=22.85 E-value=2.1e+02 Score=20.27 Aligned_cols=59 Identities=14% Similarity=0.031 Sum_probs=37.0
Q ss_pred Cce-EEEEeCCCChhhhhhHHHHHHhCCCcEEEe-c---CCHHHHHhhhCCcccEEEEEEeCcC
Q 047379 84 KGK-LIILSNNCPPLRKSEIEYYAMLAKVGVHHY-N---GNNVDLGTACGKYFRVSCLSIIDPG 142 (154)
Q Consensus 84 kak-LVIlA~Das~~~k~ki~~~c~~~~Vpvi~~-~---~tkeELG~a~Gk~~~vsvvaI~D~G 142 (154)
..+ +|||..|-+.+........++..+|+++.. + .+.++|-.+.+.+....+.-+.+..
T Consensus 108 ~~~~vivltdg~~~~~~~~~~~~~~~~gi~v~~igvG~~~~~~~L~~iA~~~~~~~~~~~~~~~ 171 (189)
T 1atz_A 108 ASKAVVILVTDVSVDSVDAAADAARSNRVTVFPIGIGDRYDAAQLRILAGPAGDSNVVKLQRIE 171 (189)
T ss_dssp SEEEEEEEECSCCSSCCHHHHHHHHHTTEEEEEEEESSSSCHHHHHHHTGGGGGGGCEEESSTT
T ss_pred CCcEEEEEeCCCCCchHHHHHHHHHHCCCEEEEEEcCCcCCHHHHHHHHCCCcccCEEEecChh
Confidence 345 667777766555556666677889888752 1 3578888888776433345554443
No 171
>3s81_A Putative aspartate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta fold, cytosol; 1.80A {Salmonella enterica subsp} PDB: 3s7z_A
Probab=22.83 E-value=1.3e+02 Score=23.84 Aligned_cols=37 Identities=16% Similarity=0.185 Sum_probs=26.4
Q ss_pred HHHHHhcCCceEEEEeCCCChhhhhhHHHHHHhCCCcEEE
Q 047379 76 VLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHH 115 (154)
Q Consensus 76 VlkaIk~gkakLVIlA~Das~~~k~ki~~~c~~~~Vpvi~ 115 (154)
..+.+.+..++++++|.|..... +..+-+..+||++.
T Consensus 91 ~~~~L~~~Gad~IVIaCNTah~~---l~~lr~~~~iPvig 127 (268)
T 3s81_A 91 YLHMLEDAGAECIVIPCNTAHYW---FDDLQNVAKARMIS 127 (268)
T ss_dssp HHHHHHHTTCSEEECSCSGGGGG---HHHHHHHCSSEEEC
T ss_pred HHHHHHHcCCCEEEEeCCCHHHH---HHHHHHHCCCCEEc
Confidence 34556667799999999986544 34444567899985
No 172
>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A
Probab=22.80 E-value=2.1e+02 Score=20.40 Aligned_cols=41 Identities=7% Similarity=-0.003 Sum_probs=27.0
Q ss_pred CceEEEEeCCCChhhhhhHHHHHHhC----CC--cEEEecCCHHHHHhhhCCc
Q 047379 84 KGKLIILSNNCPPLRKSEIEYYAMLA----KV--GVHHYNGNNVDLGTACGKY 130 (154)
Q Consensus 84 kakLVIlA~Das~~~k~ki~~~c~~~----~V--pvi~~~~tkeELG~a~Gk~ 130 (154)
.+.+|.|+.|..+ .+..+++.+ ++ |++ .....++.+..|..
T Consensus 64 ~v~vv~Is~d~~~----~~~~~~~~~~~~~~~~fp~l--~D~~~~~~~~ygv~ 110 (186)
T 1n8j_A 64 GVDVYSVSTDTHF----THKAWHSSSETIAKIKYAMI--GDPTGALTRNFDNM 110 (186)
T ss_dssp TEEEEEEESSCHH----HHHHHHHHCTTGGGCCSEEE--ECTTSHHHHHTTCE
T ss_pred CCEEEEEECCCHH----HHHHHHHHcCcccCCceeEE--ECCchHHHHHhCCc
Confidence 4788888888432 345566666 55 665 34556788888864
No 173
>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*
Probab=22.74 E-value=69 Score=25.83 Aligned_cols=50 Identities=8% Similarity=-0.041 Sum_probs=32.0
Q ss_pred HHHHHHHhc--CCceEEEEeCC-CCh--------hhhhhHHHHHHhCCCcEEEecCCHHHHH
Q 047379 74 KTVLRSLRT--SKGKLIILSNN-CPP--------LRKSEIEYYAMLAKVGVHHYNGNNVDLG 124 (154)
Q Consensus 74 ~~VlkaIk~--gkakLVIlA~D-as~--------~~k~ki~~~c~~~~Vpvi~~~~tkeELG 124 (154)
+.+.++|++ ++.++|++-.. -+| ...+.|..+|++++++++. +..-.++|
T Consensus 192 ~~l~~~l~~~~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~-De~~~~~g 252 (429)
T 1s0a_A 192 VGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIA-DEIATGFG 252 (429)
T ss_dssp HHHHHHHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEE-ECTTTTTT
T ss_pred HHHHHHHHhCCCCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEE-eehhhCCc
Confidence 455666664 46677776543 222 2268899999999999996 54433343
No 174
>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}
Probab=22.66 E-value=1.7e+02 Score=19.12 Aligned_cols=43 Identities=5% Similarity=-0.111 Sum_probs=28.4
Q ss_pred ceEEEEeCCCChhhhhhHHHHHHhCCCcEEEecCC---HHHHHhhhCCc
Q 047379 85 GKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGN---NVDLGTACGKY 130 (154)
Q Consensus 85 akLVIlA~Das~~~k~ki~~~c~~~~Vpvi~~~~t---keELG~a~Gk~ 130 (154)
+.++.+..|.++ ..+..+.+.+++++..+... ..++....|..
T Consensus 68 ~~~v~v~~d~~~---~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~ 113 (148)
T 3fkf_A 68 FAMLGISLDIDR---EAWETAIKKDTLSWDQVCDFTGLSSETAKQYAIL 113 (148)
T ss_dssp EEEEEEECCSCH---HHHHHHHHHTTCCSEEECCSCGGGCHHHHHTTCC
T ss_pred eEEEEEECCCCH---HHHHHHHHHcCCCceEEEccCCcchHHHHhcCCC
Confidence 677888878765 45555667777766643333 45888888854
No 175
>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10
Probab=22.48 E-value=1.9e+02 Score=20.50 Aligned_cols=41 Identities=5% Similarity=-0.081 Sum_probs=25.7
Q ss_pred CceEEEEeCCCChhhhhhHHHHHHhC-------C--CcEEEecCCHHHHHhhhCCc
Q 047379 84 KGKLIILSNNCPPLRKSEIEYYAMLA-------K--VGVHHYNGNNVDLGTACGKY 130 (154)
Q Consensus 84 kakLVIlA~Das~~~k~ki~~~c~~~-------~--Vpvi~~~~tkeELG~a~Gk~ 130 (154)
.+.+|.|+.|.. ..+..+.+.+ + .|++ .....++.+..|..
T Consensus 65 ~v~vv~Is~d~~----~~~~~~~~~~~~~~~~~~~~~~~l--~D~~~~~~~~~gv~ 114 (192)
T 2h01_A 65 NVELLGCSVDSK----FTHLAWKKTPLSQGGIGNIKHTLI--SDISKSIARSYDVL 114 (192)
T ss_dssp TEEEEEEESSCH----HHHHHHHTSCGGGTCCCSCSSEEE--ECTTSHHHHHTTCE
T ss_pred CCEEEEEEeCCH----HHHHHHHHhHHhhCCccCCCcCeE--ECCcHHHHHHhCCc
Confidence 477888888843 2344455544 3 4555 24457889999865
No 176
>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*
Probab=22.43 E-value=1.3e+02 Score=24.10 Aligned_cols=43 Identities=5% Similarity=0.044 Sum_probs=29.9
Q ss_pred HHHHHHHHhc--CCceEEEEeC-------CCChhhhhhHHHHHHhCCCcEEE
Q 047379 73 YKTVLRSLRT--SKGKLIILSN-------NCPPLRKSEIEYYAMLAKVGVHH 115 (154)
Q Consensus 73 ~~~VlkaIk~--gkakLVIlA~-------Das~~~k~ki~~~c~~~~Vpvi~ 115 (154)
.+.+.++|++ .+.++|++.+ ..+....++|..+|+++++.++.
T Consensus 182 ~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~ 233 (420)
T 4f4e_A 182 FDGMLAALNGYEPGTIVVLHACCHNPTGVDLNDAQWAQVVEVVKARRLVPFL 233 (420)
T ss_dssp HHHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEE
Confidence 3556677764 4567777752 23445577899999999999885
No 177
>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*
Probab=22.29 E-value=88 Score=24.76 Aligned_cols=42 Identities=10% Similarity=0.134 Sum_probs=27.6
Q ss_pred HHHHHHHhcCCceEEE-EeCCC-------ChhhhhhHHHHHHhCCCcEEE
Q 047379 74 KTVLRSLRTSKGKLII-LSNNC-------PPLRKSEIEYYAMLAKVGVHH 115 (154)
Q Consensus 74 ~~VlkaIk~gkakLVI-lA~Da-------s~~~k~ki~~~c~~~~Vpvi~ 115 (154)
+.+.++++..+.++|+ +.+=. +....++|..+|++++++++.
T Consensus 152 ~~l~~~l~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~ 201 (397)
T 2zyj_A 152 DALEEVLKRERPRFLYLIPSFQNPTGGLTPLPARKRLLQMVMERGLVVVE 201 (397)
T ss_dssp HHHHHHHHHCCCSCEEECCBSCTTTCCBCCHHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHhhcCCeEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEE
Confidence 4566677665677775 43311 223346888999999999985
No 178
>2nxf_A Putative dimetal phosphatase; dinuclear metal center phosphatase, metalloprotein, metallophosphoesterase, protein structure initiative; 1.70A {Danio rerio} SCOP: d.159.1.12
Probab=22.29 E-value=1.3e+02 Score=22.56 Aligned_cols=47 Identities=15% Similarity=0.085 Sum_probs=29.4
Q ss_pred HHHHHhcCCceEEEEeCCCChhhh-------hh---HHHHHHhCCCcEEEecCCHHH
Q 047379 76 VLRSLRTSKGKLIILSNNCPPLRK-------SE---IEYYAMLAKVGVHHYNGNNVD 122 (154)
Q Consensus 76 VlkaIk~gkakLVIlA~Das~~~k-------~k---i~~~c~~~~Vpvi~~~~tkeE 122 (154)
+++.+.+.++.+||++.|...... .. +...-...++|++...|+-+.
T Consensus 43 ~~~~~~~~~~d~vi~~GD~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~v~GNHD~ 99 (322)
T 2nxf_A 43 AVLQWRRERVQCVVQLGDIIDGHNRRRDASDRALDTVMAELDACSVDVHHVWGNHEF 99 (322)
T ss_dssp HHHHHHHTTCSEEEECSCCBCTHHHHTTCHHHHHHHHHHHHHTTCSEEEECCCHHHH
T ss_pred HHHHHHhcCCCEEEECCCccCCCCCcchHHHHHHHHHHHHHHhcCCcEEEecCCCCc
Confidence 444555577999999999876542 22 333444468999854444443
No 179
>1ytl_A Acetyl-COA decarboxylase/synthase complex epsilon 2; structural genomics; 1.80A {Archaeoglobus fulgidus} SCOP: c.31.1.6
Probab=22.20 E-value=92 Score=23.38 Aligned_cols=47 Identities=9% Similarity=0.011 Sum_probs=35.5
Q ss_pred hCCceecHHHH-HHHHhcCCceEEEEeCCCC-hhhhhhHHHHHHhCCCcEEE
Q 047379 66 SGKYTLGYKTV-LRSLRTSKGKLIILSNNCP-PLRKSEIEYYAMLAKVGVHH 115 (154)
Q Consensus 66 AGklv~G~~~V-lkaIk~gkakLVIlA~Das-~~~k~ki~~~c~~~~Vpvi~ 115 (154)
..+++. .+++ .+.|++-+-=++++-. +. ++..+.+..+++. +||++.
T Consensus 18 ~a~~~~-i~~a~a~lI~~AkRPvIl~Gg-v~~~~A~~eL~~~ae~-~iPVvt 66 (174)
T 1ytl_A 18 MATLLE-KGKPVANMIKKAKRPLLIVGP-DMTDEMFERVKKFVEK-DITVVA 66 (174)
T ss_dssp CCEECC-CHHHHHHHHHHCSSEEEEECS-CCCHHHHHHHHHHHTS-SSEEEE
T ss_pred cceecc-HHHHHHHHHHcCCCCEEEECC-CCCccHHHHHHHHHHc-CCCEEE
Confidence 344555 5666 8888887777777777 65 4566889999999 999996
No 180
>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*
Probab=22.09 E-value=1.3e+02 Score=24.30 Aligned_cols=42 Identities=5% Similarity=-0.024 Sum_probs=29.1
Q ss_pred HHHHHHHhc-----CCceEEEEeCC-------CChhhhhhHHHHHHhCCCcEEE
Q 047379 74 KTVLRSLRT-----SKGKLIILSNN-------CPPLRKSEIEYYAMLAKVGVHH 115 (154)
Q Consensus 74 ~~VlkaIk~-----gkakLVIlA~D-------as~~~k~ki~~~c~~~~Vpvi~ 115 (154)
+.+.++|++ .+.++|++..= .++...++|..+|+++++.++.
T Consensus 176 ~~l~~~l~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~ 229 (435)
T 3piu_A 176 TALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLIS 229 (435)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 455666654 36788887632 2334468888999999999985
No 181
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B* 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B*
Probab=22.07 E-value=2.2e+02 Score=25.04 Aligned_cols=84 Identities=5% Similarity=0.092 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHhCCc---eecHHHHHHHH-------hc-CCceEEEEeCCCChhh------------------------
Q 047379 54 ESINNRLALVMKSGKY---TLGYKTVLRSL-------RT-SKGKLIILSNNCPPLR------------------------ 98 (154)
Q Consensus 54 ~kil~lLglA~rAGkl---v~G~~~VlkaI-------k~-gkakLVIlA~Das~~~------------------------ 98 (154)
+.+.+.++-.+-+|++ ..|.+.++.++ .+ +--++||+++|++...
T Consensus 201 ~~F~~~V~~~~iSGn~D~PEgg~dAl~qaavC~~~igWR~~a~rllV~~TDa~~H~agDgkL~GIv~pnDg~CHL~~~~~ 280 (472)
T 3t3p_B 201 TRFNEEVKKQSVSRNRDAPEGGFDAIMQATVCDEKIGWRNDASHLLVFTTDAKTHIALDGRLAGIVQPNDGQCHVGSDNH 280 (472)
T ss_dssp HHHHHHHHHCCCCCCSSSSBCHHHHHHHHHHCHHHHTCCSSSEEEEEEEESSCBCCTTGGGGGTCCCCCCCCCCBCTTCB
T ss_pred HHHHHHHhhccccCCCCCCchHHHHHHHHhcchhhcCCCCCceEEEEEECCCCcCcCCCccccceecCCCCceEECCCCc
Confidence 4444555544445553 55688888876 23 4479999999998652
Q ss_pred -----------hhhHHHHHHhCCCcEEEecCCH------HHHHhhhCCcccEEEEEEeCcC
Q 047379 99 -----------KSEIEYYAMLAKVGVHHYNGNN------VDLGTACGKYFRVSCLSIIDPG 142 (154)
Q Consensus 99 -----------k~ki~~~c~~~~Vpvi~~~~tk------eELG~a~Gk~~~vsvvaI~D~G 142 (154)
..++.....++||..| |.-|+ ++|...+... .++++...
T Consensus 281 Y~~s~~~DYPSv~ql~~~l~e~nI~~I-FAVt~~~~~~Y~~L~~~ip~s----~vg~L~~d 336 (472)
T 3t3p_B 281 YSASTTMDYPSLGLMTEKLSQKNINLI-FAVTENVVNLYQNYSELIPGT----TVGVLSMD 336 (472)
T ss_dssp BTTTTTSCCCCHHHHHHHHHHTTCEEE-EEECGGGHHHHHHHHHTSTTC----EEEECCTT
T ss_pred ccccccCCCCCHHHHHHHHHhcCccEE-EEEeccchhHHHHHHHhCCCc----eeeecccc
Confidence 2344556666788877 45554 5677777542 57777544
No 182
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=22.07 E-value=78 Score=26.16 Aligned_cols=42 Identities=14% Similarity=0.053 Sum_probs=31.8
Q ss_pred HHHHHhcCCceEEEEeCCCChhhhhhHHHHHHhCCCcEEEecCC
Q 047379 76 VLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGN 119 (154)
Q Consensus 76 VlkaIk~gkakLVIlA~Das~~~k~ki~~~c~~~~Vpvi~~~~t 119 (154)
+++.+-..+.-.||++.+..+. +.+..+|++++||+.....+
T Consensus 75 ~~~~l~~~~iP~IIvtrg~~pp--~elie~A~e~~ipLl~T~~~ 116 (312)
T 1knx_A 75 ILHNLLKLNPPAIILTKSFTDP--TVLLQVNQTYQVPILKTDFF 116 (312)
T ss_dssp THHHHHTTCCSCEEEETTTCCC--HHHHHHGGGTCCCEEEESSC
T ss_pred HHHHHhCCCCCEEEEECCCCCC--HHHHHHHHHcCCEEEEeCcc
Confidence 4555666778899999997753 46778999999999864443
No 183
>2kvu_A MKL/myocardin-like protein 1; SAP motif, DNA/RNA binding, structural genomics, northeast structural genomics consortium (NESG), PSI-2; NMR {Homo sapiens} PDB: 2kw9_A
Probab=21.93 E-value=63 Score=21.66 Aligned_cols=35 Identities=20% Similarity=0.253 Sum_probs=28.1
Q ss_pred EeCCCChhhhhhHHHHHHhCCCcEEEecCCHHHHHhhh
Q 047379 90 LSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTAC 127 (154)
Q Consensus 90 lA~Das~~~k~ki~~~c~~~~Vpvi~~~~tkeELG~a~ 127 (154)
+..|.+.-+..++...|+.+|.|+ -+.|.||=.-+
T Consensus 22 l~~~l~klkVaeLK~eLk~RGL~~---sG~KaeLIeRL 56 (75)
T 2kvu_A 22 LPANLDDMKVAELKQELKLRSLPV---SGTKTELIERL 56 (75)
T ss_dssp CCTTTTTSCHHHHHHHHHHTTCCC---CSCHHHHHHHH
T ss_pred chHHHHHCcHHHHHHHHHHcCCCC---CCCHHHHHHHH
Confidence 466778888899999999999997 48898875433
No 184
>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}
Probab=21.80 E-value=61 Score=25.52 Aligned_cols=40 Identities=8% Similarity=-0.046 Sum_probs=27.1
Q ss_pred HHHHHHhcCCceEEEEeCCC-------ChhhhhhHHHHHHhCCCcEEE
Q 047379 75 TVLRSLRTSKGKLIILSNNC-------PPLRKSEIEYYAMLAKVGVHH 115 (154)
Q Consensus 75 ~VlkaIk~gkakLVIlA~Da-------s~~~k~ki~~~c~~~~Vpvi~ 115 (154)
.+.+++.. +.++|++.+=. +....++|..+|++++++++.
T Consensus 160 ~l~~~~~~-~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~ 206 (396)
T 3jtx_A 160 SISEEVWK-RTKLVFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIAS 206 (396)
T ss_dssp GSCHHHHH-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHCCEEEE
T ss_pred HHHHhhcc-CcEEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCCEEEE
Confidence 45555654 67888884322 223457788999999999985
No 185
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=21.79 E-value=1.4e+02 Score=23.94 Aligned_cols=50 Identities=8% Similarity=-0.035 Sum_probs=32.5
Q ss_pred CceEEEEeCCCChhhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCcccEEEEEEeC
Q 047379 84 KGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIID 140 (154)
Q Consensus 84 kakLVIlA~Das~~~k~ki~~~c~~~~Vpvi~~~~tkeELG~a~Gk~~~vsvvaI~D 140 (154)
.+.+||++.=++++. .....+++.+||++. ..|-|+..+-+..+ +||||-
T Consensus 66 ~~d~vV~Spgi~~~~--p~~~~a~~~gi~v~~---~~e~~~~~~~~~~~--~IaVTG 115 (326)
T 3eag_A 66 KADVYVIGNVAKRGM--DVVEAILNLGLPYIS---GPQWLSENVLHHHW--VLGVAG 115 (326)
T ss_dssp CCSEEEECTTCCTTC--HHHHHHHHTTCCEEE---HHHHHHHHTGGGSE--EEEEES
T ss_pred CCCEEEECCCcCCCC--HHHHHHHHcCCcEEe---HHHHHHHHHhcCCC--EEEEEC
Confidence 467888887776642 334567889999985 24556765433323 588873
No 186
>3b0z_B Flagellar biosynthetic protein FLHB; type III secretion system, protein transport, MEMB protein; 2.45A {Salmonella enterica subsp}
Probab=27.33 E-value=19 Score=25.88 Aligned_cols=27 Identities=19% Similarity=0.028 Sum_probs=20.4
Q ss_pred hhhhhHHHHHHhCCCcEEEecCCHHHHHhhh
Q 047379 97 LRKSEIEYYAMLAKVGVHHYNGNNVDLGTAC 127 (154)
Q Consensus 97 ~~k~ki~~~c~~~~Vpvi~~~~tkeELG~a~ 127 (154)
.+..+|..+|++++||+++ ...|.+++
T Consensus 27 ~~A~~I~e~A~e~gVPi~e----~~~LAr~L 53 (114)
T 3b0z_B 27 LIALRIREIGAEHRVPTLE----APPLARAL 53 (114)
Confidence 4678899999999999986 24454444
No 187
>3f7j_A YVGN protein; aldo-keto reductase, oxidoreductase; 1.70A {Bacillus subtilis} PDB: 3d3f_A*
Probab=21.64 E-value=1.6e+02 Score=23.04 Aligned_cols=64 Identities=16% Similarity=0.207 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHhCCce------ecHHHHHHHHhcCCceEEEEeCCCCh-hhhhhHHHHHHhCCCcEEEe
Q 047379 53 HESINNRLALVMKSGKYT------LGYKTVLRSLRTSKGKLIILSNNCPP-LRKSEIEYYAMLAKVGVHHY 116 (154)
Q Consensus 53 ~~kil~lLglA~rAGklv------~G~~~VlkaIk~gkakLVIlA~Das~-~~k~ki~~~c~~~~Vpvi~~ 116 (154)
.+.....|.-.++.|++. ....++.+.+.......++.--..++ .....+..+|+++||+++.|
T Consensus 119 ~~~~~~~l~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~Q~~~~~~~~~~~l~~~~~~~gi~v~a~ 189 (276)
T 3f7j_A 119 YKDTWRALEKLYKDGKIRAIGVSNFQVHHLEELLKDAEIKPMVNQVEFHPRLTQKELRDYCKGQGIQLEAW 189 (276)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEEESCCHHHHHHHHHHCSSCCSEEEEECBTTBCCHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHHHHcCCccEEEeccCCHHHHHHHHHhcCCCceeeeeeeccccCCHHHHHHHHHCCCEEEEe
Confidence 345677777788888875 24566667766665554444433444 22367889999999999864
No 188
>3lvj_C Sulfurtransferase TUSA; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 2.44A {Escherichia coli} SCOP: d.68.3.3 PDB: 3lvk_B* 1dcj_A
Probab=21.62 E-value=1.3e+02 Score=19.41 Aligned_cols=35 Identities=11% Similarity=0.321 Sum_probs=24.6
Q ss_pred HHHhcCCceEEEEeCCCChhhhhhHHHHHHhCCCcEEE
Q 047379 78 RSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHH 115 (154)
Q Consensus 78 kaIk~gkakLVIlA~Das~~~k~ki~~~c~~~~Vpvi~ 115 (154)
+.+..|. .|.|++.|-. ..+.|..+|+..|-.++.
T Consensus 32 ~~l~~G~-~l~V~~dd~~--a~~di~~~~~~~G~~~~~ 66 (82)
T 3lvj_C 32 RNMQPGE-TLLIIADDPA--TTRDIPGFCTFMEHELVA 66 (82)
T ss_dssp HTSCTTC-EEEEEECCTT--HHHHHHHHHHHTTCEEEE
T ss_pred HhCCCCC-EEEEEECCcc--HHHHHHHHHHHCCCEEEE
Confidence 3333443 4777777754 467899999999988875
No 189
>1ynp_A Oxidoreductase, AKR11C1; aldo-keto reductase, NADPH; HET: SUC; 1.25A {Bacillus halodurans} PDB: 1ynq_A*
Probab=21.61 E-value=3.1e+02 Score=21.81 Aligned_cols=63 Identities=13% Similarity=0.013 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHhCCce------ecHHHHHHHHhcCCceEEEEeCCCChhhhhhHHHHHHhCCCcEEEe
Q 047379 54 ESINNRLALVMKSGKYT------LGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHY 116 (154)
Q Consensus 54 ~kil~lLglA~rAGklv------~G~~~VlkaIk~gkakLVIlA~Das~~~k~ki~~~c~~~~Vpvi~~ 116 (154)
+..+..|...++.|++. ...+++.+.+.......+-+-=+.-......+..+|+++||.++.|
T Consensus 148 ~e~~~al~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~Q~~~nl~~~~~e~l~~~~~~~gI~v~a~ 216 (317)
T 1ynp_A 148 DETIEAFEELKQEGVIRYYGISSIRPNVIKEYLKRSNIVSIMMQYSILDRRPEEWFPLIQEHGVSVVVR 216 (317)
T ss_dssp HHHHHHHHHHHHHTSEEEEEEECCCHHHHHHHHHHSCCCEEEEECBTTBCGGGGGHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHhcCCCEEEeccCCchhCCHHHHHHHHHHcCCeEEEe
Confidence 45667778888888872 3456677777665544444333322222333889999999999864
No 190
>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Probab=21.61 E-value=2.2e+02 Score=20.23 Aligned_cols=41 Identities=10% Similarity=0.033 Sum_probs=25.9
Q ss_pred CceEEEEeCCCChhhhhhHHHHHHhC------CCcEEEecCCHHHHHhhhCCc
Q 047379 84 KGKLIILSNNCPPLRKSEIEYYAMLA------KVGVHHYNGNNVDLGTACGKY 130 (154)
Q Consensus 84 kakLVIlA~Das~~~k~ki~~~c~~~------~Vpvi~~~~tkeELG~a~Gk~ 130 (154)
.+.+|.|+.|..+ .+..+.+.+ +.|++. ....++.+..|..
T Consensus 79 ~v~vv~Vs~d~~~----~~~~~~~~~~~~~~~~~~~~~--d~~~~~~~~~~v~ 125 (195)
T 2bmx_A 79 DAQILGVSIDSEF----AHFQWRAQHNDLKTLPFPMLS--DIKRELSQAAGVL 125 (195)
T ss_dssp TEEEEEEESSCHH----HHHHHHHHCTTGGGCCSCEEE--CTTSHHHHHHTCB
T ss_pred CCEEEEEECCCHH----HHHHHHHHhccccCCceeEEe--CCchHHHHHhCCc
Confidence 4788888887532 344444544 456652 4457888888865
No 191
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf structural genomics, center for structural genomics of INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} PDB: 3t32_A*
Probab=21.60 E-value=1.2e+02 Score=23.56 Aligned_cols=42 Identities=14% Similarity=0.176 Sum_probs=29.2
Q ss_pred HHHHHHHHhcCCceEEEEeCCCCh-------hhhhhHHHHHHhCCCcEEE
Q 047379 73 YKTVLRSLRTSKGKLIILSNNCPP-------LRKSEIEYYAMLAKVGVHH 115 (154)
Q Consensus 73 ~~~VlkaIk~gkakLVIlA~Das~-------~~k~ki~~~c~~~~Vpvi~ 115 (154)
.+.+.++| +.+.++|++..=.+| ...+++..+|++++++++.
T Consensus 146 ~~~l~~~l-~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~ 194 (383)
T 3kax_A 146 FEHLEKQF-QQGVKLMLLCSPHNPIGRVWKKEELTKLGSLCTKYNVIVVA 194 (383)
T ss_dssp HHHHHHHH-TTTCCEEEEESSBTTTTBCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHh-CcCCeEEEEeCCCCCCCcCcCHHHHHHHHHHHHHCCCEEEE
Confidence 35666777 567888887543222 2357777889999999995
No 192
>2pr7_A Haloacid dehalogenase/epoxide hydrolase family; NP_599989.1, uncharacterized protein, structural genomics; 1.44A {Corynebacterium glutamicum atcc 13032}
Probab=21.59 E-value=1.5e+02 Score=19.10 Aligned_cols=13 Identities=8% Similarity=-0.061 Sum_probs=7.2
Q ss_pred hhHHHHHHhCCCc
Q 047379 100 SEIEYYAMLAKVG 112 (154)
Q Consensus 100 ~ki~~~c~~~~Vp 112 (154)
.-+...++..+++
T Consensus 78 ~~~~~~~~~~~~~ 90 (137)
T 2pr7_A 78 AAFQAAADAIDLP 90 (137)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHcCCC
Confidence 3445556666664
No 193
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=21.51 E-value=1.3e+02 Score=23.69 Aligned_cols=42 Identities=17% Similarity=0.057 Sum_probs=30.8
Q ss_pred HHHHHHHhcC---CceEEEEeCCCCh----hhhhhHHHHHHhCCCcEEE
Q 047379 74 KTVLRSLRTS---KGKLIILSNNCPP----LRKSEIEYYAMLAKVGVHH 115 (154)
Q Consensus 74 ~~VlkaIk~g---kakLVIlA~Das~----~~k~ki~~~c~~~~Vpvi~ 115 (154)
+.+.+.++.. +.++|++..--+| .-.++|..+|++++++++.
T Consensus 160 ~~l~~~l~~~~~~~~~~v~~~~~~nptG~~~~~~~l~~~~~~~~~~li~ 208 (398)
T 3a2b_A 160 EDLRAKLSRLPEDSAKLICTDGIFSMEGDIVNLPELTSIANEFDAAVMV 208 (398)
T ss_dssp HHHHHHHHTSCSSSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHhhccCCceEEEEeCCCCCCCCccCHHHHHHHHHHcCcEEEE
Confidence 4556666653 6888888765544 2358999999999999986
No 194
>2jfq_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: DGL; 2.15A {Staphylococcus aureus}
Probab=21.49 E-value=1e+02 Score=24.58 Aligned_cols=38 Identities=13% Similarity=0.137 Sum_probs=26.6
Q ss_pred HHHHHHhcCCceEEEEeCCCChh-hhhhHHHHHHhCCCcEEE
Q 047379 75 TVLRSLRTSKGKLIILSNNCPPL-RKSEIEYYAMLAKVGVHH 115 (154)
Q Consensus 75 ~VlkaIk~gkakLVIlA~Das~~-~k~ki~~~c~~~~Vpvi~ 115 (154)
+..+.+.+..++++++|.+.... ....+ -+..+||++.
T Consensus 75 ~~~~~L~~~g~d~IVIaCNTas~~~l~~l---r~~~~iPVig 113 (286)
T 2jfq_A 75 EIARKLMEFDIKMLVIACNTATAVALEYL---QKTLSISVIG 113 (286)
T ss_dssp HHHHHHTTSCCSEEEECCHHHHHHHHHHH---HHHCSSEEEE
T ss_pred HHHHHHHHCCCCEEEEeCCchhHHHHHHH---HHhCCCCEEe
Confidence 34455666679999999988764 33444 3557899985
No 195
>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4
Probab=21.45 E-value=1.2e+02 Score=23.83 Aligned_cols=69 Identities=7% Similarity=-0.145 Sum_probs=49.9
Q ss_pred ecHHHHHHHHhcCCceEEEEeCCCChhhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCcccEEEEEEeCcC
Q 047379 71 LGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPG 142 (154)
Q Consensus 71 ~G~~~VlkaIk~gkakLVIlA~Das~~~k~ki~~~c~~~~Vpvi~~~~tkeELG~a~Gk~~~vsvvaI~D~G 142 (154)
.=..++..+..-|--.+++.+.+.+ ...+++...+...|+.+...+.+.+|+-++.--... .++|...+
T Consensus 116 ~d~~qi~~a~~~GAD~VlL~~~~l~-~~l~~l~~~a~~lGl~~lvev~~~~E~~~a~~~gad--~IGvn~~~ 184 (254)
T 1vc4_A 116 VDPFMLEEARAFGASAALLIVALLG-ELTGAYLEEARRLGLEALVEVHTERELEIALEAGAE--VLGINNRD 184 (254)
T ss_dssp CSHHHHHHHHHTTCSEEEEEHHHHG-GGHHHHHHHHHHHTCEEEEEECSHHHHHHHHHHTCS--EEEEESBC
T ss_pred CCHHHHHHHHHcCCCEEEECccchH-HHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCC--EEEEcccc
Confidence 4445788888888777777788877 777888888888898865557889999877643322 47775533
No 196
>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*
Probab=21.42 E-value=1.8e+02 Score=22.85 Aligned_cols=28 Identities=7% Similarity=-0.095 Sum_probs=14.5
Q ss_pred ceEEEEeCCCChhhhhhHHHHHHhCCCcEE
Q 047379 85 GKLIILSNNCPPLRKSEIEYYAMLAKVGVH 114 (154)
Q Consensus 85 akLVIlA~Das~~~k~ki~~~c~~~~Vpvi 114 (154)
+-+||=.+ +|.........|.++++|++
T Consensus 46 ~DvvIDfT--~p~a~~~~~~~a~~~g~~~V 73 (245)
T 1p9l_A 46 TEVVIDFT--HPDVVMGNLEFLIDNGIHAV 73 (245)
T ss_dssp CCEEEECS--CTTTHHHHHHHHHHTTCEEE
T ss_pred CcEEEEcc--ChHHHHHHHHHHHHcCCCEE
Confidence 44555444 23334444555666666665
No 197
>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}
Probab=21.40 E-value=1.8e+02 Score=18.98 Aligned_cols=42 Identities=7% Similarity=-0.128 Sum_probs=24.9
Q ss_pred CceEEEEeCCCChhhhhhHHHHHHhCC---CcEEEecCCHHH--HHhhhCCc
Q 047379 84 KGKLIILSNNCPPLRKSEIEYYAMLAK---VGVHHYNGNNVD--LGTACGKY 130 (154)
Q Consensus 84 kakLVIlA~Das~~~k~ki~~~c~~~~---Vpvi~~~~tkeE--LG~a~Gk~ 130 (154)
.+.+|.+..|.++. .+..+.+.++ .|++. ....+ +....|..
T Consensus 64 ~~~~v~v~~d~~~~---~~~~~~~~~~~~~~~~~~--d~~~~~~~~~~~~i~ 110 (148)
T 3hcz_A 64 GIQVYAANIERKDE---EWLKFIRSKKIGGWLNVR--DSKNHTDFKITYDIY 110 (148)
T ss_dssp TEEEEEEECCSSSH---HHHHHHHHHTCTTSEEEE--CTTCCCCHHHHHCCC
T ss_pred CEEEEEEEecCCHH---HHHHHHHHcCCCCceEEe--ccccchhHHHhcCcC
Confidence 37788888876554 4455556665 44542 33333 78888753
No 198
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=21.27 E-value=1.4e+02 Score=20.19 Aligned_cols=48 Identities=13% Similarity=0.149 Sum_probs=34.7
Q ss_pred cHHHHHHHHhcCCceEEEEeCCCChhhhhhHHHHHHhCCCcEEEecCCHHHHH
Q 047379 72 GYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLG 124 (154)
Q Consensus 72 G~~~VlkaIk~gkakLVIlA~Das~~~k~ki~~~c~~~~Vpvi~~~~tkeELG 124 (154)
+..++...+ ..+-+||++.+.... .+++...+..+++|++. -+....|
T Consensus 41 ~~~~~~~~~--~~~D~Ii~t~~l~~~-~~~~~~~~~~~~~pv~~--I~~~~y~ 88 (109)
T 2l2q_A 41 AETRLSEVV--DRFDVVLLAPQSRFN-KKRLEEITKPKGIPIEI--INTIDYG 88 (109)
T ss_dssp CSTTHHHHT--TTCSEEEECSCCSSH-HHHHHHHHHHHTCCEEE--CCHHHHH
T ss_pred cHHHHHhhc--CCCCEEEECCccHHH-HHHHHHHhcccCCCEEE--EChHHhc
Confidence 444554443 458899999999776 78888888888999984 4555444
No 199
>3by5_A Cobalamin biosynthesis protein; structural genomics, unknown function; 2.52A {Agrobacterium tumefaciens str} SCOP: c.151.1.1
Probab=21.13 E-value=1.1e+02 Score=22.88 Aligned_cols=27 Identities=7% Similarity=-0.059 Sum_probs=21.8
Q ss_pred hhhhHHHHHHhCCCcEEEecCCHHHHHhh
Q 047379 98 RKSEIEYYAMLAKVGVHHYNGNNVDLGTA 126 (154)
Q Consensus 98 ~k~ki~~~c~~~~Vpvi~~~~tkeELG~a 126 (154)
.-.-+..+|+..++|+. .++.+||...
T Consensus 52 dE~gL~e~A~~lgvPl~--~~~~eeL~~v 78 (155)
T 3by5_A 52 DEAGLAEAAKGLSLSLE--IVAQERLEAV 78 (155)
T ss_dssp CCHHHHHHHHHTTCCEE--ECCHHHHHHH
T ss_pred CCHHHHHHHHHhCCCeE--EECHHHHhhc
Confidence 34568899999999998 4889999764
No 200
>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10
Probab=21.12 E-value=2.5e+02 Score=20.82 Aligned_cols=42 Identities=12% Similarity=0.101 Sum_probs=26.3
Q ss_pred CCc-eEEEEeCCCChhhhhhHHHHHHhCC---CcEEEecCCHHHHHhhhCCc
Q 047379 83 SKG-KLIILSNNCPPLRKSEIEYYAMLAK---VGVHHYNGNNVDLGTACGKY 130 (154)
Q Consensus 83 gka-kLVIlA~Das~~~k~ki~~~c~~~~---Vpvi~~~~tkeELG~a~Gk~ 130 (154)
..+ .+|-|+.|.. .....+++.++ .|++. ....+++++.|..
T Consensus 67 ~~~~~vv~is~d~~----~~~~~~~~~~~~~~~~~l~--D~~~~~~~~~gv~ 112 (241)
T 1nm3_A 67 YGVDDILVVSVNDT----FVMNAWKEDEKSENISFIP--DGNGEFTEGMGML 112 (241)
T ss_dssp TTCCEEEEEESSCH----HHHHHHHHHTTCTTSEEEE--CTTSHHHHHTTCE
T ss_pred CCCCEEEEEEcCCH----HHHHHHHHhcCCCceEEEE--CCCcHHHHHhCce
Confidence 347 7888888742 23455556554 56663 4456788888864
No 201
>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; 1.60A {Aquifex aeolicus} SCOP: d.159.1.6
Probab=21.05 E-value=1.5e+02 Score=21.82 Aligned_cols=24 Identities=4% Similarity=0.093 Sum_probs=18.4
Q ss_pred HHHHHHHhcCCceEEEEeCCCChh
Q 047379 74 KTVLRSLRTSKGKLIILSNNCPPL 97 (154)
Q Consensus 74 ~~VlkaIk~gkakLVIlA~Das~~ 97 (154)
+.+++.++..++-+||++.|....
T Consensus 22 ~~~l~~~~~~~~D~vi~~GDl~~~ 45 (260)
T 2yvt_A 22 PKLKGVIAEKQPDILVVVGNILKN 45 (260)
T ss_dssp HHHHHHHHHHCCSEEEEESCCCCC
T ss_pred HHHHHHHHhcCCCEEEECCCCCCc
Confidence 456666666679999999998764
No 202
>3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel, allosteric modulation, phenylethanolamine, N-glycosylation, extracellular; HET: NAG BMA MAN FUC QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A* 3jpy_A*
Probab=21.00 E-value=1.2e+02 Score=24.50 Aligned_cols=45 Identities=2% Similarity=0.064 Sum_probs=30.0
Q ss_pred HHHHHHHHhcCCceEEEEeCCCCh-hhhhhHHHHHHhCCCcEEEec
Q 047379 73 YKTVLRSLRTSKGKLIILSNNCPP-LRKSEIEYYAMLAKVGVHHYN 117 (154)
Q Consensus 73 ~~~VlkaIk~gkakLVIlA~Das~-~~k~ki~~~c~~~~Vpvi~~~ 117 (154)
.+.+.+.+..+++.-||.....+. ....-+..+|..++||.|.|.
T Consensus 52 ~~~~C~~l~~~~V~aiIgg~~s~~~a~a~~v~~i~~~~~iP~IS~~ 97 (364)
T 3qel_B 52 ITRICDLMSDRKIQGVVFADDTDQEAIAQILDFISAQTLTPILGIH 97 (364)
T ss_dssp HHHHHHHHHHSCEEEEEEEESSCCTHHHHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHHHhCCeEEEEecCCCCchHHHHHHHHHHhccCCCEEEee
Confidence 345666666677766666544443 334457889999999999753
No 203
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Probab=20.90 E-value=1.2e+02 Score=23.43 Aligned_cols=45 Identities=18% Similarity=0.067 Sum_probs=29.7
Q ss_pred HHHHHHHHhcCCceEEEEeCCCChh----hhhhHHHHHHhCCCcEEEecC
Q 047379 73 YKTVLRSLRTSKGKLIILSNNCPPL----RKSEIEYYAMLAKVGVHHYNG 118 (154)
Q Consensus 73 ~~~VlkaIk~gkakLVIlA~Das~~----~k~ki~~~c~~~~Vpvi~~~~ 118 (154)
.+.+.++|...+.++|++..=.+|. -.+.|..+|++++++++. +.
T Consensus 160 ~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~-De 208 (397)
T 3f9t_A 160 EKFVKDAVEDYDVDGIIGIAGTTELGTIDNIEELSKIAKENNIYIHV-DA 208 (397)
T ss_dssp HHHHHHHHHHSCCCEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEE-EC
T ss_pred HHHHHHHHhhcCCeEEEEECCCCCCCCCCCHHHHHHHHHHhCCeEEE-Ec
Confidence 3566677766355666655433332 257889999999999985 44
No 204
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*
Probab=20.71 E-value=1e+02 Score=24.94 Aligned_cols=42 Identities=10% Similarity=0.004 Sum_probs=30.0
Q ss_pred HHHHHHHhc---CCceEEEEeCCCC--------hhhhhhHHHHHHhCCCcEEE
Q 047379 74 KTVLRSLRT---SKGKLIILSNNCP--------PLRKSEIEYYAMLAKVGVHH 115 (154)
Q Consensus 74 ~~VlkaIk~---gkakLVIlA~Das--------~~~k~ki~~~c~~~~Vpvi~ 115 (154)
+.+.++|.. ++.++|++..=.. ....+.|..+|+++|++++.
T Consensus 170 ~~Le~~i~~~~~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~ 222 (467)
T 2oqx_A 170 EGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVM 222 (467)
T ss_dssp HHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHhcCCCceeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEE
Confidence 456667764 4688888853222 23468899999999999996
No 205
>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*
Probab=20.66 E-value=1.5e+02 Score=23.82 Aligned_cols=44 Identities=5% Similarity=-0.156 Sum_probs=30.5
Q ss_pred HHHHHHHh---cCCceEEEEeCCCCh--------hhhhhHHHHHHhCCCcEEEecC
Q 047379 74 KTVLRSLR---TSKGKLIILSNNCPP--------LRKSEIEYYAMLAKVGVHHYNG 118 (154)
Q Consensus 74 ~~VlkaIk---~gkakLVIlA~Das~--------~~k~ki~~~c~~~~Vpvi~~~~ 118 (154)
+.+.++|+ ..+.++||+-..-++ ...+.|..+|++++++++. +.
T Consensus 188 ~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~-DE 242 (439)
T 3dxv_A 188 TLLTEKLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVC-DE 242 (439)
T ss_dssp HHHHHHHHTSCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEE-EC
T ss_pred HHHHHHHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEE-ec
Confidence 45566664 456777777654332 2268899999999999996 43
No 206
>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}
Probab=20.62 E-value=2.3e+02 Score=21.27 Aligned_cols=40 Identities=10% Similarity=0.041 Sum_probs=25.8
Q ss_pred CceEEEEeCCCChhhhhhHHHHHHhC-------C--CcEEEecCCHHHHHhhhCC
Q 047379 84 KGKLIILSNNCPPLRKSEIEYYAMLA-------K--VGVHHYNGNNVDLGTACGK 129 (154)
Q Consensus 84 kakLVIlA~Das~~~k~ki~~~c~~~-------~--Vpvi~~~~tkeELG~a~Gk 129 (154)
.+.+|.|+.|..+ .+..+++.+ + .|++ .....++.+..|.
T Consensus 90 ~v~vv~Is~D~~~----~~~~~~~~~~~~~g~~~~~fp~l--~D~~~~~~~~ygv 138 (221)
T 2c0d_A 90 NVELLGISVDSVY----SHLAWKNMPIEKGGIGNVEFTLV--SDINKDISKNYNV 138 (221)
T ss_dssp TEEEEEEESSCHH----HHHHHHHSCGGGTCCCSCSSEEE--ECTTSHHHHHTTC
T ss_pred CCEEEEEeCCCHH----HHHHHHHHhhhhcCccCCceEEE--ECCchHHHHHcCC
Confidence 4778888887433 344555655 3 4665 2445688888886
No 207
>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*
Probab=20.61 E-value=71 Score=26.29 Aligned_cols=34 Identities=3% Similarity=-0.082 Sum_probs=27.5
Q ss_pred CceEEEEeCCCChhhhhhHHHHHHhCCCcEEEecCC
Q 047379 84 KGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGN 119 (154)
Q Consensus 84 kakLVIlA~Das~~~k~ki~~~c~~~~Vpvi~~~~t 119 (154)
...+||.+.| +...+..+..+|..++||++. .++
T Consensus 125 ~~dvVv~~~d-~~~~r~~ln~~~~~~~ip~i~-~~~ 158 (346)
T 1y8q_A 125 QFDAVCLTCC-SRDVIVKVDQICHKNSIKFFT-GDV 158 (346)
T ss_dssp TCSEEEEESC-CHHHHHHHHHHHHHTTCEEEE-EEE
T ss_pred CCCEEEEcCC-CHHHHHHHHHHHHHcCCCEEE-Eee
Confidence 4788888877 566788899999999999994 443
No 208
>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A*
Probab=20.53 E-value=82 Score=27.75 Aligned_cols=34 Identities=3% Similarity=0.003 Sum_probs=27.9
Q ss_pred CceEEEEeCCCChhhhhhHHHHHHhCCCcEEEecCC
Q 047379 84 KGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGN 119 (154)
Q Consensus 84 kakLVIlA~Das~~~k~ki~~~c~~~~Vpvi~~~~t 119 (154)
...+||.+.| +..++..+.++|..++||++. .++
T Consensus 124 ~~DvVi~~~d-~~~~r~~ln~~c~~~~iplI~-~~~ 157 (531)
T 1tt5_A 124 RFTVVVATQL-PESTSLRLADVLWNSQIPLLI-CRT 157 (531)
T ss_dssp GCSEEEEESC-CHHHHHHHHHHHHHTTCCEEE-EEE
T ss_pred CCCEEEEeCC-CHHHHHHHHHHHHHcCCCEEE-EEe
Confidence 4678998877 567899999999999999995 533
No 209
>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}
Probab=20.41 E-value=1.9e+02 Score=19.05 Aligned_cols=43 Identities=2% Similarity=-0.120 Sum_probs=26.0
Q ss_pred ceEEEEeCCCChhhhhhHHHHHHhCCCcEEEecCCHHHHHhhhCCc
Q 047379 85 GKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKY 130 (154)
Q Consensus 85 akLVIlA~Das~~~k~ki~~~c~~~~Vpvi~~~~tkeELG~a~Gk~ 130 (154)
+.+|.+..|.++. .+..+.+.+++++..+.....++.+..|..
T Consensus 62 ~~~v~v~~d~~~~---~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~ 104 (152)
T 3gl3_A 62 FQVVAVNLDAKTG---DAMKFLAQVPAEFTVAFDPKGQTPRLYGVK 104 (152)
T ss_dssp EEEEEEECCSSHH---HHHHHHHHSCCCSEEEECTTCHHHHHTTCC
T ss_pred eEEEEEECCCCHH---HHHHHHHHcCCCCceeECCcchhHHHcCCC
Confidence 6777777776643 344455566554443344556788888753
No 210
>2vvt_A Glutamate racemase; isomerase, peptidoglycan synthesis, cell WALL biogenesis/degradation, cell shape, benzyl purine, MURI inhibitor; HET: I24 DGL; 1.65A {Enterococcus faecalis} PDB: 2jfp_A* 2jfo_A* 2jfu_A 2jfv_A* 2jfw_A*
Probab=20.31 E-value=1.4e+02 Score=23.78 Aligned_cols=38 Identities=13% Similarity=0.111 Sum_probs=25.7
Q ss_pred HHHHHhcCCceEEEEeCCCChhhhhhHHHHHHhCCCcEEE
Q 047379 76 VLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHH 115 (154)
Q Consensus 76 VlkaIk~gkakLVIlA~Das~~~k~ki~~~c~~~~Vpvi~ 115 (154)
..+.+.+..+++|++|.+..-.. -+..+-+..+||++.
T Consensus 78 ~~~~L~~~g~d~IVIACNTas~~--~l~~lr~~~~iPVig 115 (290)
T 2vvt_A 78 MADFLLKKRIKMLVIACNTATAV--ALEEIKAALPIPVVG 115 (290)
T ss_dssp HHHHHHTTTCSEEEECCHHHHHH--HHHHHHHHCSSCEEE
T ss_pred HHHHHHHCCCCEEEEeCcchhHH--HHHHHHHhCCCCEEc
Confidence 44555566699999999877532 133444567899995
No 211
>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}
Probab=20.29 E-value=97 Score=27.62 Aligned_cols=109 Identities=16% Similarity=0.103 Sum_probs=58.9
Q ss_pred hhHHHHhhcCCCCC--cccchhhhhcchhHHHHHhhhhhhhhhhh---hhhHHHHHHHHHHHHHH----------hCCce
Q 047379 6 ETLDEFKSAGAASP--LLGLVCYFAAAREVFFGATKQSKMVTSKK---TKKTHESINNRLALVMK----------SGKYT 70 (154)
Q Consensus 6 ~~~~~~~~~~~~~~--~~grg~y~~~~~~~~~~a~~~~~~~~~~k---~~~~~~kil~lLglA~r----------AGklv 70 (154)
-++|.++.+|.-+. .|=-.-=||++-..+..+++++.= .+-+ .+..+..+++-+-++-= ...+.
T Consensus 121 l~ld~L~~~G~~~~~~~flVnGsTgg~lamilaa~r~~rp-g~d~VIvpRn~HKSv~kAliL~Gl~Pv~V~p~~d~~~~~ 199 (501)
T 3hl2_A 121 LVLDIIKLAGVHTVANCFVVPMATGMSLTLCFLTLRHKRP-KAKYIIWPRIDQKSCFKSMITAGFEPVVIENVLEGDELR 199 (501)
T ss_dssp HHHHHHHHTTCTTCCEEEEESSCHHHHHHHHHHHHHHHCT-TCCEEEEECCCCHHHHHHHHHTTCEEEEECEEEETTEEE
T ss_pred HHHHHHHHcCCCCCCcEEEECcHHHHHHHHHHHHcCcccC-CCCEEEEecchHHHHHHHHHHcCCeEEEEeeeecccccC
Confidence 46788888876543 221222367777777777775310 0011 11122333333333210 11344
Q ss_pred ecHHHHHHHHhc-C-CceEEEEeC-CC----ChhhhhhHHHHHHhCCCcEEE
Q 047379 71 LGYKTVLRSLRT-S-KGKLIILSN-NC----PPLRKSEIEYYAMLAKVGVHH 115 (154)
Q Consensus 71 ~G~~~VlkaIk~-g-kakLVIlA~-Da----s~~~k~ki~~~c~~~~Vpvi~ 115 (154)
+=.+.+.++|++ | ++.++|+.+ .+ +..-.+.|..+|.++|||++.
T Consensus 200 id~e~le~aI~e~ga~~i~~V~~Ttt~y~p~~~ddI~eIaeIch~~gIpllV 251 (501)
T 3hl2_A 200 TDLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIV 251 (501)
T ss_dssp ECHHHHHHHHHHHCGGGEEEEEEECSCCTTBCCCCHHHHHHHHHHHTCCEEE
T ss_pred CCHHHHHHHHHhcCCCcEEEEEecCCCCCCcccccHHHHHHHHHHcCCeEEE
Confidence 445778888876 3 444444433 21 224568889999999999985
No 212
>1toa_A Tromp-1, protein (periplasmic binding protein TROA); zinc binding protein, ABC trans binding protein; 1.80A {Treponema pallidum} SCOP: c.92.2.2 PDB: 1k0f_A
Probab=20.26 E-value=1.2e+02 Score=24.55 Aligned_cols=24 Identities=8% Similarity=0.091 Sum_probs=19.8
Q ss_pred CCCChhhhhhHHHHHHhCCCcEEE
Q 047379 92 NNCPPLRKSEIEYYAMLAKVGVHH 115 (154)
Q Consensus 92 ~Das~~~k~ki~~~c~~~~Vpvi~ 115 (154)
++.|+....++.++.+.++|++|.
T Consensus 228 ~eps~~~l~~l~~~ik~~~v~~If 251 (313)
T 1toa_A 228 SEASAHDMQELAAFIAQRKLPAIF 251 (313)
T ss_dssp SCCCHHHHHHHHHHHHHTTCSEEE
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEE
Confidence 456667788999999999999984
No 213
>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A
Probab=20.00 E-value=2.1e+02 Score=21.14 Aligned_cols=42 Identities=7% Similarity=-0.081 Sum_probs=26.5
Q ss_pred CCceEEEEeCCCChhhhhhHHHHHHhC---------CCcEEEecCCHHHHHhhhCCc
Q 047379 83 SKGKLIILSNNCPPLRKSEIEYYAMLA---------KVGVHHYNGNNVDLGTACGKY 130 (154)
Q Consensus 83 gkakLVIlA~Das~~~k~ki~~~c~~~---------~Vpvi~~~~tkeELG~a~Gk~ 130 (154)
..+.+|.|+.|..+ .+..+++.+ +.|++. ....++.+..|..
T Consensus 85 ~~v~vv~Is~D~~~----~~~~~~~~~~~~~g~~~~~fp~l~--D~~~~~~~~ygv~ 135 (213)
T 2i81_A 85 RNVELLGCSVDSKY----THLAWKKTPLAKGGIGNIKHTLLS--DITKSISKDYNVL 135 (213)
T ss_dssp TTEEEEEEESSCHH----HHHHHHSSCGGGTCCCSCSSEEEE--CTTSHHHHHTTCE
T ss_pred CCCEEEEEeCCCHH----HHHHHHHHHHhhCCccCCCceEEE--CCchHHHHHhCCc
Confidence 34788999888332 344455544 456652 4457899999865
Done!