BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047385
(483 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase
Mechanism And Interactions With Microtubules
Length = 355
Score = 314 bits (804), Expect = 9e-86, Method: Compositional matrix adjust.
Identities = 165/334 (49%), Positives = 223/334 (66%), Gaps = 9/334 (2%)
Query: 2 SNITVCARFRPLSSKERSNHGDS-VCIHGIDNESFIFKDDKEENFKFGFDRVFYEKSEQA 60
++I V ARFRP + E + G V G D + D KE F FDRVF +Q+
Sbjct: 6 NSIKVVARFRPQNRVEIESGGQPIVTFQGPDTCTV---DSKEAQGSFTFDRVFDMSCKQS 62
Query: 61 EVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTVDELF 120
++F+F P + D NG NGTV YGQTGAGK+++M G SI D +G++ R V+++F
Sbjct: 63 DIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSI--DDPDGRGVIPRIVEQIF 120
Query: 121 DCMKSSDASVKFTIKLSMVEIYMEKVRDLFDLSRDNIQIKESRVQGILLSGVTEIYVFNS 180
+ SS A++++T+++S +EIYME++RDL DN+ + E + +G+ + G+ EIYV +
Sbjct: 121 TSILSSAANIEYTVRVSYMEIYMERIRDLLAPQNDNLPVHEEKNRGVYVKGLLEIYVSSV 180
Query: 181 AEALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQELTKEKRVKAGKLLLVDLAGSE 240
E + + G + RAV T MN SSRSH I++ T+ Q+ + K+G+L LVDLAGSE
Sbjct: 181 QEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVETGSAKSGQLFLVDLAGSE 240
Query: 241 KAEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSPGKAFHIPYRDSKLTRILQDALGG 300
K KTGA G+ LEEAK INKSLSALG VI+ALT GK+ H+PYRDSKLTRILQ++LGG
Sbjct: 241 KVGKTGASGQTLEEAKKINKSLSALGMVINALT---DGKSSHVPYRDSKLTRILQESLGG 297
Query: 301 NSRTALLCCCSPSTSNSAESLSTLRFGTRAKHIK 334
NSRT L+ CSPS+ N AE+LSTLRFG RAK IK
Sbjct: 298 NSRTTLIINCSPSSYNDAETLSTLRFGMRAKSIK 331
>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker
Length = 349
Score = 290 bits (741), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 159/332 (47%), Positives = 213/332 (64%), Gaps = 13/332 (3%)
Query: 3 NITVCARFRPLSSKERSNHGDSVCIHGIDNESFIFKDDKEENFKFGFDRVFYEKSEQAEV 62
NI V RFRPL+ E N GD I E + K + FDRVF + Q +V
Sbjct: 8 NIKVMCRFRPLNESE-VNRGDKY-IAKFQGEDTVVIASK----PYAFDRVFQSSTSQEQV 61
Query: 63 FEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTVDELFDC 122
+ A I++D G NGT+ YGQT +GKT +MEG D + G++ R V ++F+
Sbjct: 62 YNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGK---LHDPEGMGIIPRIVQDIFNY 118
Query: 123 MKSSDASVKFTIKLSMVEIYMEKVRDLFDLSRDNIQIKESRVQGILLSGVTEIYVFNSAE 182
+ S D +++F IK+S EIY++K+RDL D+S+ N+ + E + + + G TE +V + E
Sbjct: 119 IYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTERFVCSPDE 178
Query: 183 ALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQELTKEKRVKAGKLLLVDLAGSEKA 242
+ ++ G SNR V T MN SSRSH I++ V+QE T+ ++ +GKL LVDLAGSEK
Sbjct: 179 VMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGSEKV 238
Query: 243 EKTGAEGKVLEEAKTINKSLSALGNVISALTCGSPGKAFHIPYRDSKLTRILQDALGGNS 302
KTGAEG VL+EAK INKSLSALGNVISAL GS ++PYRDSK+TRILQD+LGGN
Sbjct: 239 SKTGAEGAVLDEAKNINKSLSALGNVISALAEGST----YVPYRDSKMTRILQDSLGGNC 294
Query: 303 RTALLCCCSPSTSNSAESLSTLRFGTRAKHIK 334
RT ++ CCSPS+ N +E+ STL FG RAK IK
Sbjct: 295 RTTIVICCSPSSYNESETKSTLLFGQRAKTIK 326
>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain
pdb|2P4N|K Chain K, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 325
Score = 288 bits (737), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 158/331 (47%), Positives = 212/331 (64%), Gaps = 13/331 (3%)
Query: 3 NITVCARFRPLSSKERSNHGDSVCIHGIDNESFIFKDDKEENFKFGFDRVFYEKSEQAEV 62
NI V RFRPL+ E N GD I E + K + FDRVF + Q +V
Sbjct: 8 NIKVMCRFRPLNESE-VNRGDKY-IAKFQGEDTVVIASK----PYAFDRVFQSSTSQEQV 61
Query: 63 FEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTVDELFDC 122
+ A I++D G NGT+ YGQT +GKT +MEG D + G++ R V ++F+
Sbjct: 62 YNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGK---LHDPEGMGIIPRIVQDIFNY 118
Query: 123 MKSSDASVKFTIKLSMVEIYMEKVRDLFDLSRDNIQIKESRVQGILLSGVTEIYVFNSAE 182
+ S D +++F IK+S EIY++K+RDL D+S+ N+ + E + + + G TE +V + E
Sbjct: 119 IYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTERFVCSPDE 178
Query: 183 ALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQELTKEKRVKAGKLLLVDLAGSEKA 242
+ ++ G SNR V T MN SSRSH I++ V+QE T+ ++ +GKL LVDLAGSEK
Sbjct: 179 VMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGSEKV 238
Query: 243 EKTGAEGKVLEEAKTINKSLSALGNVISALTCGSPGKAFHIPYRDSKLTRILQDALGGNS 302
KTGAEG VL+EAK INKSLSALGNVISAL GS ++PYRDSK+TRILQD+LGGN
Sbjct: 239 SKTGAEGAVLDEAKNINKSLSALGNVISALAEGST----YVPYRDSKMTRILQDSLGGNC 294
Query: 303 RTALLCCCSPSTSNSAESLSTLRFGTRAKHI 333
RT ++ CCSPS+ N +E+ STL FG RAK I
Sbjct: 295 RTTIVICCSPSSYNESETKSTLLFGQRAKTI 325
>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
Length = 340
Score = 288 bits (736), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 157/332 (47%), Positives = 212/332 (63%), Gaps = 13/332 (3%)
Query: 3 NITVCARFRPLSSKERSNHGDSVCIHGIDNESFIFKDDKEENFKFGFDRVFYEKSEQAEV 62
NI V RFRPL+ E N GD + E + K + FDRVF + Q +V
Sbjct: 8 NIKVMCRFRPLNESE-VNRGDKY-VAKFQGEDTVMIASK----PYAFDRVFQSSTSQEQV 61
Query: 63 FEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTVDELFDC 122
+ A I++D G NGT+ YGQT +GK +MEG D + G++ R V ++F+
Sbjct: 62 YNDCAKKIVKDVLEGYNGTIFAYGQTSSGKNHTMEGK---LHDPEGMGIIPRIVQDIFNY 118
Query: 123 MKSSDASVKFTIKLSMVEIYMEKVRDLFDLSRDNIQIKESRVQGILLSGVTEIYVFNSAE 182
+ S D +++F IK+S EIY++K+RDL D+S+ N+ + E + + + G TE +V + E
Sbjct: 119 IYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTERFVCSPDE 178
Query: 183 ALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQELTKEKRVKAGKLLLVDLAGSEKA 242
+ ++ G SNR V T MN SSRSH I++ V+QE T+ ++ +GKL LVDLAGSEK
Sbjct: 179 VMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGSEKV 238
Query: 243 EKTGAEGKVLEEAKTINKSLSALGNVISALTCGSPGKAFHIPYRDSKLTRILQDALGGNS 302
KTGAEG VL+EAK INKSLSALGNVISAL GS ++PYRDSK+TRILQD+LGGN
Sbjct: 239 SKTGAEGAVLDEAKNINKSLSALGNVISALAEGST----YVPYRDSKMTRILQDSLGGNC 294
Query: 303 RTALLCCCSPSTSNSAESLSTLRFGTRAKHIK 334
RT ++ CCSPS+ N +E+ STL FG RAK IK
Sbjct: 295 RTTIVICCSPSSYNESETKSTLLFGQRAKTIK 326
>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y5W|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y65|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|C Chain C, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|D Chain D, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
Length = 365
Score = 279 bits (714), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 151/337 (44%), Positives = 214/337 (63%), Gaps = 21/337 (6%)
Query: 4 ITVCARFRPLSSKERSNHGDSVCIHGIDNESFIFKDDKEENF------KFGFDRVFYEKS 57
I V RFRPL+ E G + F ++ EEN + FD+VF +
Sbjct: 13 IKVVCRFRPLNDSEEK-AGSKFVVK--------FPNNVEENCISIAGKVYLFDKVFKPNA 63
Query: 58 EQAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTVD 117
Q +V+ A I+ D G NGT+ YGQT +GKT +MEG + D K+G++ R V+
Sbjct: 64 SQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTMEG---VIGDSVKQGIIPRIVN 120
Query: 118 ELFDCMKSSDASVKFTIKLSMVEIYMEKVRDLFDLSRDNIQIKESRVQGILLSGVTEIYV 177
++F+ + + + +++F IK+S EIYM+K+RDL D+S+ N+ + E + + + G TE +V
Sbjct: 121 DIFNHIYAMEVNLEFHIKVSYYEIYMDKIRDLLDVSKVNLSVHEDKNRVPYVKGATERFV 180
Query: 178 FNSAEALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQELTKEKRVKAGKLLLVDLA 237
+ + + + G SNR + T MN SSRSH +++ V+QE + ++ +GKL LVDLA
Sbjct: 181 SSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLENQKKLSGKLYLVDLA 240
Query: 238 GSEKAEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSPGKAFHIPYRDSKLTRILQDA 297
GSEK KTGAEG VL+EAK INKSLSALGNVISAL + G HIPYRDSKLTRILQ++
Sbjct: 241 GSEKVSKTGAEGTVLDEAKNINKSLSALGNVISAL---ADGNKTHIPYRDSKLTRILQES 297
Query: 298 LGGNSRTALLCCCSPSTSNSAESLSTLRFGTRAKHIK 334
LGGN+RT ++ CCSP++ N +E+ STL FG RAK +K
Sbjct: 298 LGGNARTTIVICCSPASFNESETKSTLDFGRRAKTVK 334
>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
pdb|3B6U|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
Length = 372
Score = 241 bits (614), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 138/347 (39%), Positives = 206/347 (59%), Gaps = 19/347 (5%)
Query: 4 ITVCARFRPLSSKERSNHGDSVCIHGIDNESFIFKDDK----EENFKFGFDRVFYEKSEQ 59
+ V R RP++ KE++ D V + K+ K E F FD V+ ++Q
Sbjct: 23 VRVVVRCRPMNGKEKAASYDKVVDVDVKLGQVSVKNPKGTAHEMPKTFTFDAVYDWNAKQ 82
Query: 60 AEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTVDEL 119
E+++ P++ G NGT+ YGQTG GKT++MEG + D +K+G++ + D +
Sbjct: 83 FELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTMEG---IRGDPEKRGVIPNSFDHI 139
Query: 120 FDCMKSSDASVKFTIKLSMVEIYMEKVRDLFDLSRDN---IQIKESRVQGILLSGVTEIY 176
F + S ++ ++ S +EIY E++RDL LS+D +++KE G+ + ++
Sbjct: 140 FTHISRSQNQ-QYLVRASYLEIYQEEIRDL--LSKDQTKRLELKERPDTGVYVKDLSSFV 196
Query: 177 VFNSAEALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQE---LTKEKRVKAGKLLL 233
+ E + G NR+VG T MN SSRSH I++ T++ L E ++ GKL L
Sbjct: 197 TKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEVGLDGENHIRVGKLNL 256
Query: 234 VDLAGSEKAEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSPGKAFHIPYRDSKLTRI 293
VDLAGSE+ KTGA+G+ L+EA IN SLSALGNVISAL GK+ HIPYRDSKLTR+
Sbjct: 257 VDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALV---DGKSTHIPYRDSKLTRL 313
Query: 294 LQDALGGNSRTALLCCCSPSTSNSAESLSTLRFGTRAKHIKASPHAH 340
LQD+LGGN++T ++ P++ N E+L+TLR+ RAK+IK P +
Sbjct: 314 LQDSLGGNAKTVMVANVGPASYNVEETLTTLRYANRAKNIKNKPRVN 360
>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
pdb|2VVG|B Chain B, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
Length = 350
Score = 226 bits (576), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 141/349 (40%), Positives = 200/349 (57%), Gaps = 26/349 (7%)
Query: 3 NITVCARFRPLSSKERSNHGDSVCIHGIDNESFIFKDDKEENFK-----------FGFDR 51
NI V R RPL+++E +++ I +D S D E K F FD
Sbjct: 5 NIKVIVRCRPLNARE--TRENALNIIRMDEASAQVIVDPPEQEKSATQAKKVPRTFTFDA 62
Query: 52 VFYEKSEQAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSMEGPSILACDEQKKGL 111
V+ + S +F+ P+I G N T+ YGQTGAGKT++M G ++++ G
Sbjct: 63 VYDQTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTMGG------NKEEPGA 116
Query: 112 LQRTVDELFDCMKSSDASVKFTIKLSMVEIYMEKVRDLFDLSRDNIQIKESRVQGILLSG 171
+ + LFD + SS ++ F + S +E+Y E++RDL + + +KE + +GI + G
Sbjct: 117 IPNSFKHLFDAINSSSSNQNFLVIGSYLELYNEEIRDLIK-NNTKLPLKEDKTRGIYVDG 175
Query: 172 VTEIYVFNSAEALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQ-QELTKEKRV-KAG 229
++ V +AE + G +NR V TQMN SSRSH I++ ++ E+ + K V + G
Sbjct: 176 LSMHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSEVIENKEVIRVG 235
Query: 230 KLLLVDLAGSEKAEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSPGKAFHIPYRDSK 289
KL LVDLAGSE+ KTGA G+ L E IN SLSALG VIS L G A HIPYRDSK
Sbjct: 236 KLNLVDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEG----ATHIPYRDSK 291
Query: 290 LTRILQDALGGNSRTALLCCCSPSTSNSAESLSTLRFGTRAKHIKASPH 338
LTR+LQD+LGGNS+T + SP+++N E++STLR+ RAK IK P
Sbjct: 292 LTRLLQDSLGGNSKTLMCANISPASTNYDETMSTLRYADRAKQIKNKPR 340
>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|C Chain C, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 373
Score = 225 bits (573), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 139/360 (38%), Positives = 201/360 (55%), Gaps = 33/360 (9%)
Query: 3 NITVCARFRPLSSKERSNHGDSVCIHGIDNESFIFKD---------DKEENFKFGFDRVF 53
NI V R RP + ER H I + K+ DK + FD VF
Sbjct: 18 NIQVVVRVRPFNLAERK-----ASAHSIVESDPVRKEVSVRTGGLADKSSRKTYTFDMVF 72
Query: 54 YEKSEQAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSMEG---PSILACDEQKK- 109
++Q +V+ + PI+ + G N T+ YGQTG GKTF+MEG P+ C E+
Sbjct: 73 GASTKQIDVYRSVVAPILDEVIMGYNATIFAYGQTGTGKTFTMEGERSPNEEYCWEEDPL 132
Query: 110 -GLLQRTVDELFDCMKSSDASVKFTIKLSMVEIYMEKVRDLFDLSRD---NIQI--KESR 163
G++ RT+ ++F+ K +D +F++K+S++EIY E++ DL + S D +Q+
Sbjct: 133 AGIIPRTLHQIFE--KLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRN 190
Query: 164 VQGILLSGVTEIYVFNSAEALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQELTK- 222
+G+++ G+ EI V N E Q L G + R T MN SSRSH ++ T+ + T
Sbjct: 191 KRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTI 250
Query: 223 --EKRVKAGKLLLVDLAGSEKAEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSPGKA 280
E+ VK GKL LVDLAGSE ++GA K EA IN+SL LG VI+AL +P
Sbjct: 251 DGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTP--- 307
Query: 281 FHIPYRDSKLTRILQDALGGNSRTALLCCCSPSTSNSAESLSTLRFGTRAKHIKASPHAH 340
H+PYR+SKLTRILQD+LGG +RT+++ SP++ N E+LSTL + RAK+I P +
Sbjct: 308 -HVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVN 366
>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|1Q0B|B Chain B, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|2FKY|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FKY|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FL2|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL2|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL6|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2FL6|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2IEH|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2IEH|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2Q2Y|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Y|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Z|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|2Q2Z|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|3CJO|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 30
pdb|3CJO|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 30
Length = 367
Score = 217 bits (553), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 137/355 (38%), Positives = 200/355 (56%), Gaps = 23/355 (6%)
Query: 3 NITVCARFRPLSSKERSNHGDSVC-IHGIDNESFIFKD---DKEENFKFGFDRVFYEKSE 58
NI V R RP + ER S+ + E + DK + FD VF ++
Sbjct: 17 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 76
Query: 59 QAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSMEG---PSILACDEQKK--GLLQ 113
Q +V+ + PI+ + G N T+ YGQTG GKTF+MEG P+ E+ G++
Sbjct: 77 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIP 136
Query: 114 RTVDELFDCMKSSDASVKFTIKLSMVEIYMEKVRDLFDLSRD---NIQI--KESRVQGIL 168
RT+ ++F+ K +D +F++K+S++EIY E++ DL + S D +Q+ +G++
Sbjct: 137 RTLHQIFE--KLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVI 194
Query: 169 LSGVTEIYVFNSAEALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQELTK---EKR 225
+ G+ EI V N E Q L G + R T MN SSRSH ++ T+ + T E+
Sbjct: 195 IKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEEL 254
Query: 226 VKAGKLLLVDLAGSEKAEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSPGKAFHIPY 285
VK GKL LVDLAGSE ++GA K EA IN+SL LG VI+AL +P H+PY
Sbjct: 255 VKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTP----HVPY 310
Query: 286 RDSKLTRILQDALGGNSRTALLCCCSPSTSNSAESLSTLRFGTRAKHIKASPHAH 340
R+SKLTRILQD+LGG +RT+++ SP++ N E+LSTL + RAK+I P +
Sbjct: 311 RESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVN 365
>pdb|4A28|A Chain A, Eg5-2
pdb|4A28|B Chain B, Eg5-2
Length = 368
Score = 217 bits (553), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 137/355 (38%), Positives = 200/355 (56%), Gaps = 23/355 (6%)
Query: 3 NITVCARFRPLSSKERSNHGDSVC-IHGIDNESFIFKD---DKEENFKFGFDRVFYEKSE 58
NI V R RP + ER S+ + E + DK + FD VF ++
Sbjct: 18 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 77
Query: 59 QAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSMEG---PSILACDEQKK--GLLQ 113
Q +V+ + PI+ + G N T+ YGQTG GKTF+MEG P+ E+ G++
Sbjct: 78 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLDGIIP 137
Query: 114 RTVDELFDCMKSSDASVKFTIKLSMVEIYMEKVRDLFDLSRD---NIQI--KESRVQGIL 168
RT+ ++F+ K +D +F++K+S++EIY E++ DL + S D +Q+ +G++
Sbjct: 138 RTLHQIFE--KLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVI 195
Query: 169 LSGVTEIYVFNSAEALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQELTK---EKR 225
+ G+ EI V N E Q L G + R T MN SSRSH ++ T+ + T E+
Sbjct: 196 IKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEEL 255
Query: 226 VKAGKLLLVDLAGSEKAEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSPGKAFHIPY 285
VK GKL LVDLAGSE ++GA K EA IN+SL LG VI+AL +P H+PY
Sbjct: 256 VKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTP----HVPY 311
Query: 286 RDSKLTRILQDALGGNSRTALLCCCSPSTSNSAESLSTLRFGTRAKHIKASPHAH 340
R+SKLTRILQD+LGG +RT+++ SP++ N E+LSTL + RAK+I P +
Sbjct: 312 RESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVN 366
>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3HQD|B Chain B, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3KEN|A Chain A, Human Eg5 In Complex With S-Trityl-L-Cysteine
Length = 369
Score = 217 bits (553), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 137/355 (38%), Positives = 200/355 (56%), Gaps = 23/355 (6%)
Query: 3 NITVCARFRPLSSKERSNHGDSVC-IHGIDNESFIFKD---DKEENFKFGFDRVFYEKSE 58
NI V R RP + ER S+ + E + DK + FD VF ++
Sbjct: 18 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 77
Query: 59 QAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSMEG---PSILACDEQKK--GLLQ 113
Q +V+ + PI+ + G N T+ YGQTG GKTF+MEG P+ E+ G++
Sbjct: 78 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIP 137
Query: 114 RTVDELFDCMKSSDASVKFTIKLSMVEIYMEKVRDLFDLSRD---NIQI--KESRVQGIL 168
RT+ ++F+ K +D +F++K+S++EIY E++ DL + S D +Q+ +G++
Sbjct: 138 RTLHQIFE--KLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVI 195
Query: 169 LSGVTEIYVFNSAEALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQELTK---EKR 225
+ G+ EI V N E Q L G + R T MN SSRSH ++ T+ + T E+
Sbjct: 196 IKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEEL 255
Query: 226 VKAGKLLLVDLAGSEKAEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSPGKAFHIPY 285
VK GKL LVDLAGSE ++GA K EA IN+SL LG VI+AL +P H+PY
Sbjct: 256 VKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTP----HVPY 311
Query: 286 RDSKLTRILQDALGGNSRTALLCCCSPSTSNSAESLSTLRFGTRAKHIKASPHAH 340
R+SKLTRILQD+LGG +RT+++ SP++ N E+LSTL + RAK+I P +
Sbjct: 312 RESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVN 366
>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1II6|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1YRS|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|1YRS|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2FME|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2FME|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2GM1|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|D Chain D, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|E Chain E, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2G1Q|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2G1Q|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2PG2|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2PG2|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2UYI|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYI|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYM|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|2UYM|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|3K5E|A Chain A, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K5E|B Chain B, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K3B|A Chain A, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3K3B|B Chain B, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3L9H|A Chain A, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|3L9H|B Chain B, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|2X7C|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7C|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7D|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7D|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7E|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2X7E|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2WOG|A Chain A, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|B Chain B, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|C Chain C, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2X2R|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2XAE|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|4A50|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
2-amino-5-(3-methylphenyl)-5,5-diphenylpentanoic Acid
pdb|4A51|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|D Chain D, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|E Chain E, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|F Chain F, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|G Chain G, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A5Y|A Chain A, Eg5-Inhibitor Complex
pdb|4A5Y|B Chain B, Eg5-Inhibitor Complex
pdb|4A5Y|C Chain C, Eg5-Inhibitor Complex
Length = 368
Score = 217 bits (553), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 137/355 (38%), Positives = 200/355 (56%), Gaps = 23/355 (6%)
Query: 3 NITVCARFRPLSSKERSNHGDSVC-IHGIDNESFIFKD---DKEENFKFGFDRVFYEKSE 58
NI V R RP + ER S+ + E + DK + FD VF ++
Sbjct: 18 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 77
Query: 59 QAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSMEG---PSILACDEQKK--GLLQ 113
Q +V+ + PI+ + G N T+ YGQTG GKTF+MEG P+ E+ G++
Sbjct: 78 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIP 137
Query: 114 RTVDELFDCMKSSDASVKFTIKLSMVEIYMEKVRDLFDLSRD---NIQI--KESRVQGIL 168
RT+ ++F+ K +D +F++K+S++EIY E++ DL + S D +Q+ +G++
Sbjct: 138 RTLHQIFE--KLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVI 195
Query: 169 LSGVTEIYVFNSAEALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQELTK---EKR 225
+ G+ EI V N E Q L G + R T MN SSRSH ++ T+ + T E+
Sbjct: 196 IKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEEL 255
Query: 226 VKAGKLLLVDLAGSEKAEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSPGKAFHIPY 285
VK GKL LVDLAGSE ++GA K EA IN+SL LG VI+AL +P H+PY
Sbjct: 256 VKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTP----HVPY 311
Query: 286 RDSKLTRILQDALGGNSRTALLCCCSPSTSNSAESLSTLRFGTRAKHIKASPHAH 340
R+SKLTRILQD+LGG +RT+++ SP++ N E+LSTL + RAK+I P +
Sbjct: 312 RESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVN 366
>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|B Chain B, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|C Chain C, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|D Chain D, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
Length = 370
Score = 217 bits (552), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 137/355 (38%), Positives = 200/355 (56%), Gaps = 23/355 (6%)
Query: 3 NITVCARFRPLSSKERSNHGDSVC-IHGIDNESFIFKD---DKEENFKFGFDRVFYEKSE 58
NI V R RP + ER S+ + E + DK + FD VF ++
Sbjct: 20 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 79
Query: 59 QAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSMEG---PSILACDEQKK--GLLQ 113
Q +V+ + PI+ + G N T+ YGQTG GKTF+MEG P+ E+ G++
Sbjct: 80 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIP 139
Query: 114 RTVDELFDCMKSSDASVKFTIKLSMVEIYMEKVRDLFDLSRD---NIQI--KESRVQGIL 168
RT+ ++F+ K +D +F++K+S++EIY E++ DL + S D +Q+ +G++
Sbjct: 140 RTLHQIFE--KLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVI 197
Query: 169 LSGVTEIYVFNSAEALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQELTK---EKR 225
+ G+ EI V N E Q L G + R T MN SSRSH ++ T+ + T E+
Sbjct: 198 IKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEEL 257
Query: 226 VKAGKLLLVDLAGSEKAEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSPGKAFHIPY 285
VK GKL LVDLAGSE ++GA K EA IN+SL LG VI+AL +P H+PY
Sbjct: 258 VKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTP----HVPY 313
Query: 286 RDSKLTRILQDALGGNSRTALLCCCSPSTSNSAESLSTLRFGTRAKHIKASPHAH 340
R+SKLTRILQD+LGG +RT+++ SP++ N E+LSTL + RAK+I P +
Sbjct: 314 RESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVN 368
>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
pdb|1X88|B Chain B, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
Length = 359
Score = 217 bits (552), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 137/355 (38%), Positives = 200/355 (56%), Gaps = 23/355 (6%)
Query: 3 NITVCARFRPLSSKERSNHGDSVC-IHGIDNESFIFKD---DKEENFKFGFDRVFYEKSE 58
NI V R RP + ER S+ + E + DK + FD VF ++
Sbjct: 9 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 68
Query: 59 QAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSMEG---PSILACDEQKK--GLLQ 113
Q +V+ + PI+ + G N T+ YGQTG GKTF+MEG P+ E+ G++
Sbjct: 69 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIP 128
Query: 114 RTVDELFDCMKSSDASVKFTIKLSMVEIYMEKVRDLFDLSRD---NIQI--KESRVQGIL 168
RT+ ++F+ K +D +F++K+S++EIY E++ DL + S D +Q+ +G++
Sbjct: 129 RTLHQIFE--KLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVI 186
Query: 169 LSGVTEIYVFNSAEALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQELTK---EKR 225
+ G+ EI V N E Q L G + R T MN SSRSH ++ T+ + T E+
Sbjct: 187 IKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEEL 246
Query: 226 VKAGKLLLVDLAGSEKAEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSPGKAFHIPY 285
VK GKL LVDLAGSE ++GA K EA IN+SL LG VI+AL +P H+PY
Sbjct: 247 VKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTP----HVPY 302
Query: 286 RDSKLTRILQDALGGNSRTALLCCCSPSTSNSAESLSTLRFGTRAKHIKASPHAH 340
R+SKLTRILQD+LGG +RT+++ SP++ N E+LSTL + RAK+I P +
Sbjct: 303 RESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVN 357
>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site
Length = 348
Score = 217 bits (552), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 137/352 (38%), Positives = 199/352 (56%), Gaps = 23/352 (6%)
Query: 3 NITVCARFRPLSSKERSNHGDSVC-IHGIDNESFIFKD---DKEENFKFGFDRVFYEKSE 58
NI V R RP + ER S+ + E + DK + FD VF ++
Sbjct: 3 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 62
Query: 59 QAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSMEG---PSILACDEQKK--GLLQ 113
Q +V+ + PI+ + G N T+ YGQTG GKTF+MEG P+ E+ G++
Sbjct: 63 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIP 122
Query: 114 RTVDELFDCMKSSDASVKFTIKLSMVEIYMEKVRDLFDLSRD---NIQI--KESRVQGIL 168
RT+ ++F+ K +D +F++K+S++EIY E++ DL + S D +Q+ +G++
Sbjct: 123 RTLHQIFE--KLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVI 180
Query: 169 LSGVTEIYVFNSAEALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQELTK---EKR 225
+ G+ EI V N E Q L G + R T MN SSRSH ++ T+ + T E+
Sbjct: 181 IKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEEL 240
Query: 226 VKAGKLLLVDLAGSEKAEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSPGKAFHIPY 285
VK GKL LVDLAGSE ++GA K EA IN+SL LG VI+AL +P H+PY
Sbjct: 241 VKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTP----HVPY 296
Query: 286 RDSKLTRILQDALGGNSRTALLCCCSPSTSNSAESLSTLRFGTRAKHIKASP 337
R+SKLTRILQD+LGG +RT+++ SP++ N E+LSTL + RAK+I P
Sbjct: 297 RESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKP 348
>pdb|4A1Z|A Chain A, Eg5-1
pdb|4A1Z|B Chain B, Eg5-1
Length = 368
Score = 217 bits (552), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 137/355 (38%), Positives = 200/355 (56%), Gaps = 23/355 (6%)
Query: 3 NITVCARFRPLSSKERSNHGDSVC-IHGIDNESFIFKD---DKEENFKFGFDRVFYEKSE 58
NI V R RP + ER S+ + E + DK + FD VF ++
Sbjct: 18 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 77
Query: 59 QAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSMEG---PSILACDEQKK--GLLQ 113
Q +V+ + PI+ + G N T+ YGQTG GKTF+MEG P+ E+ G++
Sbjct: 78 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEVPLAGIIP 137
Query: 114 RTVDELFDCMKSSDASVKFTIKLSMVEIYMEKVRDLFDLSRD---NIQI--KESRVQGIL 168
RT+ ++F+ K +D +F++K+S++EIY E++ DL + S D +Q+ +G++
Sbjct: 138 RTLHQIFE--KLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVI 195
Query: 169 LSGVTEIYVFNSAEALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQELTK---EKR 225
+ G+ EI V N E Q L G + R T MN SSRSH ++ T+ + T E+
Sbjct: 196 IKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEEL 255
Query: 226 VKAGKLLLVDLAGSEKAEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSPGKAFHIPY 285
VK GKL LVDLAGSE ++GA K EA IN+SL LG VI+AL +P H+PY
Sbjct: 256 VKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTP----HVPY 311
Query: 286 RDSKLTRILQDALGGNSRTALLCCCSPSTSNSAESLSTLRFGTRAKHIKASPHAH 340
R+SKLTRILQD+LGG +RT+++ SP++ N E+LSTL + RAK+I P +
Sbjct: 312 RESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVN 366
>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 216 bits (551), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 134/340 (39%), Positives = 199/340 (58%), Gaps = 20/340 (5%)
Query: 4 ITVCARFRPLSSKERSNHGDSVCIHGIDNESFIFKDDKEENFKFGFDRVFYEKSEQAEVF 63
+ V R RPL KE HG C+ E + + + FGF V E + Q V+
Sbjct: 13 VRVALRVRPLLPKELL-HGHQSCLQ---VEPGLGRVTLGRDRHFGFHVVLAEDAGQEAVY 68
Query: 64 EFLALPIIRDAFNGMNGTVITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTVDELFDCM 123
+ P++ F G N TV YGQTG+GKT++M S+ + E ++G++ R + E F +
Sbjct: 69 QACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAEAFKLI 128
Query: 124 KSSDASVKFTIKLSMVEIYMEKVRDLFDL---SRDNIQIKESRVQGILLSGVTEIYVFNS 180
+D + + +S +E+Y E+ RDL ++ SRD IQ++E ++L GV E+ V
Sbjct: 129 DENDL-LDCLVHVSYLEVYKEEFRDLLEVGTASRD-IQLREDERGNVVLCGVKEVDVEGL 186
Query: 181 AEALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQE---LTKEKRVKAGKLLL---- 233
E L L G + R G T +N SSRSH ++ T++Q ++ R G+LL+
Sbjct: 187 DEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPSRLPRPAPGQLLVSKFH 246
Query: 234 -VDLAGSEKAEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSPGK-AFHIPYRDSKLT 291
VDLAGSE+ KTG+ G+ L+E+ IN SL ALGNVISAL G P + HIPYRDSK+T
Sbjct: 247 FVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISAL--GDPQRRGSHIPYRDSKIT 304
Query: 292 RILQDALGGNSRTALLCCCSPSTSNSAESLSTLRFGTRAK 331
RIL+D+LGGN++T ++ C SPS+S+ E+L+TL + +RA+
Sbjct: 305 RILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344
>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
pdb|3LRE|B Chain B, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
Length = 355
Score = 214 bits (545), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 134/354 (37%), Positives = 198/354 (55%), Gaps = 32/354 (9%)
Query: 3 NITVCARFRPLSSKERSNHGDSVCIHGIDNESFIFKDDKEE------------------- 43
++ V R RP ++KE++ G +H +D +F +EE
Sbjct: 11 HMKVVVRVRPENTKEKAA-GFHKVVHVVDKHILVFDPKQEEVSFFHGKKTTNQNVIKKQN 69
Query: 44 -NFKFGFDRVFYEKSEQAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSMEGPSIL 102
+ KF FD VF E S Q+EVFE PI+R NG N TV+ YG TGAGKT +M G
Sbjct: 70 KDLKFVFDAVFDETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLG---- 125
Query: 103 ACDEQKKGLLQRTVDELFDCMKSSDASVKFTIKLSMVEIYMEKVRDLFDLSRDNIQIKES 162
+ DE G++ T+ L+ CM + +S +E+Y E++RDL ++ + ++E
Sbjct: 126 SADE--PGVMYLTMLHLYKCMDEIKEEKICSTAVSYLEVYNEQIRDLL-VNSGPLAVRED 182
Query: 163 RVQGILLSGVTEIYVFNSAEALQSLASGISNRAVGETQMNMASSRSHCIY-IFTVQQELT 221
+G+++ G+T +S E L L +G NR T MN SSRSH ++ I+ QQ+ T
Sbjct: 183 TQKGVVVHGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHAVFQIYLRQQDKT 242
Query: 222 K--EKRVKAGKLLLVDLAGSEKAEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSPGK 279
+ V+ K+ L+DLAGSE+A +GA+G E IN+SL ALGNVI+AL S K
Sbjct: 243 ASINQNVRIAKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNVINAL-ADSKRK 301
Query: 280 AFHIPYRDSKLTRILQDALGGNSRTALLCCCSPSTSNSAESLSTLRFGTRAKHI 333
HIPYR+SKLTR+L+D+LGGN +T ++ SPS+ ++ +TL++ RAK I
Sbjct: 302 NQHIPYRNSKLTRLLKDSLGGNCQTIMIAAVSPSSVFYDDTYNTLKYANRAKDI 355
>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|B Chain B, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|C Chain C, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
Length = 354
Score = 213 bits (542), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 135/356 (37%), Positives = 196/356 (55%), Gaps = 34/356 (9%)
Query: 2 SNITVCARFRPLSSKERSNHGDSVCIHGIDNESFIFK---------DDKEENFKFGFDRV 52
S + V R RP++ +E H + C+ +D I D + + F +D
Sbjct: 1 SKVKVAVRIRPMNRRETDLH--TKCVVDVDANKVILNPVNTNLSKGDARGQPKVFAYDHC 58
Query: 53 FYEKSE--------QAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSMEGPSILAC 104
F+ E Q VF+ L I+++AF+G N + YGQTG+GK+++M G +
Sbjct: 59 FWSMDESVKEKYAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTMMGTA---- 114
Query: 105 DEQKKGLLQRTVDELFD-CMKSSDASVKFTIKLSMVEIYMEKVRDLFDL--SRDNIQIKE 161
+ GL+ R LF+ K + F +++S +EIY EKVRDL D SR ++++E
Sbjct: 115 --DQPGLIPRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLLDPKGSRQTLKVRE 172
Query: 162 SRVQGILLSGVTEIYVFNSAEALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQELT 221
V G + G++++ V + + ++ G +R V T MN SSRSH ++ T+ L
Sbjct: 173 HSVLGPYVDGLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLY 232
Query: 222 KEKR----VKAGKLLLVDLAGSEKAEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSP 277
K K GKL LVDLAGSE+A KTGA G L+E INKSL+ LG VISAL S
Sbjct: 233 DVKSGTSGEKVGKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQSA 292
Query: 278 GKAFH--IPYRDSKLTRILQDALGGNSRTALLCCCSPSTSNSAESLSTLRFGTRAK 331
GK + +PYRDS LT +L+D+LGGNS+TA++ SP+ N E+LSTLR+ RAK
Sbjct: 293 GKNKNKFVPYRDSVLTWLLKDSLGGNSKTAMVATVSPAADNYDETLSTLRYADRAK 348
>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 212 bits (539), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 132/340 (38%), Positives = 199/340 (58%), Gaps = 20/340 (5%)
Query: 4 ITVCARFRPLSSKERSNHGDSVCIHGIDNESFIFKDDKEENFKFGFDRVFYEKSEQAEVF 63
+ V R RPL KE HG C+ E + + + FGF V E + Q V+
Sbjct: 13 VRVALRVRPLLPKELL-HGHQSCLQ---VEPGLGRVTLGRDRHFGFHVVLAEDAGQEAVY 68
Query: 64 EFLALPIIRDAFNGMNGTVITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTVDELFDCM 123
+ P++ F G N TV YGQTG+GKT++M S+ + E ++G++ R + E F +
Sbjct: 69 QACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAEAFKLI 128
Query: 124 KSSDASVKFTIKLSMVEIYMEKVRDLFDL---SRDNIQIKESRVQGILLSGVTEIYVFNS 180
+D + + +S +E+Y E+ RDL ++ SRD IQ++E ++L GV E+ V
Sbjct: 129 DENDL-LDCLVHVSYLEVYKEEFRDLLEVGTASRD-IQLREDERGNVVLCGVKEVDVEGL 186
Query: 181 AEALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQE---LTKEKRVKAGKLLL---- 233
E L L G + R G T +N SSRSH ++ T++Q ++ R G+LL+
Sbjct: 187 DEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLKQRGRAPSRLPRPAPGQLLVSKFH 246
Query: 234 -VDLAGSEKAEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSPGK-AFHIPYRDSKLT 291
VDLAGSE+ KTG+ G++ +E+ IN SL ALGNVISAL G P + +IPYRDSK+T
Sbjct: 247 FVDLAGSERVLKTGSTGELRKESIQINSSLLALGNVISAL--GDPQRRGSNIPYRDSKIT 304
Query: 292 RILQDALGGNSRTALLCCCSPSTSNSAESLSTLRFGTRAK 331
RIL+D+LGGN++T ++ C SPS+S+ E+L+TL + +RA+
Sbjct: 305 RILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344
>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
pdb|1T5C|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
Length = 349
Score = 211 bits (538), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 129/344 (37%), Positives = 202/344 (58%), Gaps = 21/344 (6%)
Query: 4 ITVCARFRPLSSKERSNHGDSVCIHGIDNESFIFKDDKEENFKFGFDRVFYEKSEQAEVF 63
+ VC R RPL+S+E S G++ ++ + + I++ D ++F F DRVF+ V+
Sbjct: 6 VAVCVRVRPLNSREES-LGETAQVYWKTDNNVIYQVDGSKSFNF--DRVFHGNETTKNVY 62
Query: 64 EFLALPIIRDAFNGMNGTVITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTVDELFDCM 123
E +A PII A G NGT+ YGQT +GKT++M G E G++ R + ++F +
Sbjct: 63 EEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTMMG------SEDHLGVIPRAIHDIFQKI 116
Query: 124 KSSDASVKFTIKLSMVEIYMEKVRDLFDLSR--DNIQIKESRVQGILLSGVTEIYVFNSA 181
K +F +++S +EIY E + DL ++ + I+E + + ++ +TE V+ S
Sbjct: 117 KKF-PDREFLLRVSYMEIYNETITDLLCGTQKMKPLIIREDVNRNVYVADLTEEVVYTSE 175
Query: 182 EALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQ-----QELTKEKRVKAGKLLLVDL 236
AL+ + G +R GET+MN SSRSH I+ ++ + E VK L LVDL
Sbjct: 176 MALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEGSVKVSHLNLVDL 235
Query: 237 AGSEKAEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSPGKAFHIPYRDSKLTRILQD 296
AGSE+A +TGA G L+E IN+SL LG VI L+ G G I YRDSKLTRILQ+
Sbjct: 236 AGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGG--FINYRDSKLTRILQN 293
Query: 297 ALGGNSRTALLCCCSPSTSNSAESLSTLRFGTRAKHIKASPHAH 340
+LGGN++T ++C +P + + E+L+ L+F + AK++K +P+ +
Sbjct: 294 SLGGNAKTRIICTITPVSFD--ETLTALQFASTAKYMKNTPYVN 335
>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
pdb|3B6V|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
Length = 395
Score = 209 bits (532), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 133/371 (35%), Positives = 201/371 (54%), Gaps = 43/371 (11%)
Query: 4 ITVCARFRPLSSKERSNHGDSVCIHGIDNESFIFKDDK----EENFKFGFDRVFYEKSEQ 59
+ V AR RPLS KE + + + + ++ + E F FD V+ S+Q
Sbjct: 23 LKVVARCRPLSRKEEAAGHEQILTMDVKLGQVTLRNPRAAPGELPKTFTFDAVYDASSKQ 82
Query: 60 AEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTVDEL 119
A++++ P+I G NGTV YGQTG GKT++M+G + + + +G++ + +
Sbjct: 83 ADLYDETVRPLIDSVLQGFNGTVFAYGQTGTGKTYTMQGTWV---EPELRGVIPNAFEHI 139
Query: 120 FDCMKSSDASVKFTIKLSMVEIYMEKVRDLFDLSRD---NIQIKESRVQGILLSGVTEIY 176
F + S + ++ ++ S +EIY E++RDL LS++ +++KE+ G+ + ++
Sbjct: 140 FTHISRSQ-NQQYLVRASYLEIYQEEIRDL--LSKEPGKRLELKENPETGVYIKDLSSFV 196
Query: 177 VFNSAEALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQ---QELTKEKRVKAGKLLL 233
N E + G RAVG T MN SSRSH I+I TV+ + + ++ GKL L
Sbjct: 197 TKNVKEIEHVMNLGNQTRAVGSTHMNEVSSRSHAIFIITVECSERGSDGQDHIRVGKLNL 256
Query: 234 VDLAGSEKAEKTG---AEGKVL---------------------EEAKTINKSLSALGNVI 269
VDLAGSE+ K G A G +EA IN SLSALGNVI
Sbjct: 257 VDLAGSERQNKAGPNTAGGAATPSSGGGGGGGGSGGGAGGERPKEASKINLSLSALGNVI 316
Query: 270 SALTCGSPGKAFHIPYRDSKLTRILQDALGGNSRTALLCCCSPSTSNSAESLSTLRFGTR 329
+AL ++ HIPYRDSKLTR+LQD+LGGN++T ++ P++ + ESLSTLRF R
Sbjct: 317 AALAGN---RSTHIPYRDSKLTRLLQDSLGGNAKTIMVATLGPASHSYDESLSTLRFANR 373
Query: 330 AKHIKASPHAH 340
AK+IK P +
Sbjct: 374 AKNIKNKPRVN 384
>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp
Length = 373
Score = 200 bits (509), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 127/351 (36%), Positives = 192/351 (54%), Gaps = 19/351 (5%)
Query: 3 NITVCARFRPLSSKERS-NHGDSVCIHGIDNESFIFKDDKEENFKFGFDRVFYEKSEQAE 61
NI V R RPL+S+ER + V + G D + KF FDR F +S+Q +
Sbjct: 24 NIQVYVRVRPLNSRERCIRSAEVVDVVGPREVVTRHTLDSKLTKKFTFDRSFGPESKQCD 83
Query: 62 VFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSMEGPSILAC-----DEQKKGLLQRTV 116
V+ + P+I + NG N TV YGQTG GKT +M G D+ G++ R +
Sbjct: 84 VYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDIGIIPRAL 143
Query: 117 DELFDCMKSSDASVKFTIKLSMVEIYMEKVRDLF---DLSRDNIQIKESRVQGILLSGVT 173
LFD ++ + V++T+++S +E+Y E++ DL D ++ I ++ +++ G+
Sbjct: 144 SHLFDELRMME--VEYTMRISYLELYNEELCDLLSTDDTTKIRIFDDSTKKGSVIIQGLE 201
Query: 174 EIYVFNSAEALQSLASGISNRAVGETQMNMASSRSHCIYIFTV---QQELTKEKRVKAGK 230
EI V + + + L G R T MN SSRSH ++ V + + E +K GK
Sbjct: 202 EIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHIRENGIEGEDMLKIGK 261
Query: 231 LLLVDLAGSEKAEKTGAE-GKVLEEAKTINKSLSALGNVISALTCGSPGKAFHIPYRDSK 289
L LVDLAGSE K G E G + E IN+SL LG VI+AL +P H+PYR+SK
Sbjct: 262 LNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVDRAP----HVPYRESK 317
Query: 290 LTRILQDALGGNSRTALLCCCSPSTSNSAESLSTLRFGTRAKHIKASPHAH 340
LTR+LQ++LGG ++T+++ SP + E+LSTL + RAK+I+ P +
Sbjct: 318 LTRLLQESLGGRTKTSIIATISPGHKDIEETLSTLEYAHRAKNIQNKPEVN 368
>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 22
Length = 388
Score = 199 bits (505), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 118/352 (33%), Positives = 189/352 (53%), Gaps = 17/352 (4%)
Query: 2 SNITVCARFRPLSSKERSNHGDSVCIHGIDNESFIFKD--DKEENFKFGFDRVFYEKSEQ 59
+ + V R RP + D C+ G+D+ S + + +E K+ FD + E+S Q
Sbjct: 21 ARVRVAVRLRPFVDGT-AGASDPPCVRGMDSCSLEIANWRNHQETLKYQFDAFYGERSTQ 79
Query: 60 AEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTVDEL 119
+++ PI+R G N +V+ YG TGAGKT +M G ++ G++ R + +L
Sbjct: 80 QDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTMLG------SPEQPGVIPRALMDL 133
Query: 120 FDCMKSSDASVK---FTIKLSMVEIYMEKVRDLFDLSRDNIQIKESRVQGILLSGVTEIY 176
+ A + ++ +S +EIY EKV DL D + ++ I+E IL+ G+++
Sbjct: 134 LQLTREEGAEGRPWALSVTMSYLEIYQEKVLDLLDPASGDLVIREDCRGNILIPGLSQKP 193
Query: 177 VFNSAEALQSLASGISNRAVGETQMNMASSRSHCIYIFTV-QQELTKEKRVKAGKLLLVD 235
+ + A+ + NR VG T++N SSRSH + + V Q+E R + GKL L+D
Sbjct: 194 ISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQRERLAPFRQREGKLYLID 253
Query: 236 LAGSEKAEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSPGKAFHIPYRDSKLTRILQ 295
LAGSE +TG +G L+E+ IN SL LG V+ AL G P +PYRDSKLTR+LQ
Sbjct: 254 LAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQGLP----RVPYRDSKLTRLLQ 309
Query: 296 DALGGNSRTALLCCCSPSTSNSAESLSTLRFGTRAKHIKASPHAHCSKESNA 347
D+LGG++ + L+ +P +++S L F R+K + P + S + +A
Sbjct: 310 DSLGGSAHSILIANIAPERRFYLDTVSALNFAARSKEVINRPFTNESLQPHA 361
>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its
Calcium Binding Regulator
Length = 386
Score = 197 bits (502), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 125/344 (36%), Positives = 188/344 (54%), Gaps = 19/344 (5%)
Query: 4 ITVCARFRPLSSKERSNHGDSVCIHGIDNESF--IFKDDKEENFKFGFDRVFYEKSEQAE 61
I V R RPL+ KE S+ + + +D + +KDDK + + +DRVF ++ Q +
Sbjct: 15 IRVYCRIRPLNEKE-SSEREKQMLTTVDEFTVEHPWKDDKRK--QHIYDRVFDMRASQDD 71
Query: 62 VFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTVDELFD 121
+FE +++ A +G N + YGQTG+GKTF++ G E GL R ELF+
Sbjct: 72 IFEDTKY-LVQSAVDGYNVCIFAYGQTGSGKTFTIYG------HESNPGLTPRATKELFN 124
Query: 122 CMKSSDASVKFTIKLSMVEIYMEKVRDLF---DLSRDNIQIKESRVQGILLSGVTEIYVF 178
+K F++K MVE+Y + + DL R ++IK+ + + VT I +
Sbjct: 125 ILKRDSKRFSFSLKAYMVELYQDTLVDLLLPKSARRLKLEIKKDSKGMVFVENVTTIPIS 184
Query: 179 NSAEALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQELTKEKRVKAGKLLLVDLAG 238
E L G R V T MN SSRSH I ++ + + GKL VDLAG
Sbjct: 185 TLEELRMILERGSERRHVSGTNMNEESSRSHLILSVVIESIDLQTQSAARGKLSFVDLAG 244
Query: 239 SEKAEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSPGKAFHIPYRDSKLTRILQDAL 298
SE+ +K+G+ G L+EA++INKSLSALG+VI AL+ G+ HIPYR+ KLT ++ D+L
Sbjct: 245 SERVKKSGSAGNQLKEAQSINKSLSALGDVIGALSSGNQ----HIPYRNHKLTMLMSDSL 300
Query: 299 GGNSRTALLCCCSPSTSNSAESLSTLRFGTRAKHIKASPHAHCS 342
GGN++T + SP+ SN E+ ++L + +R + I P H S
Sbjct: 301 GGNAKTLMFVNVSPAESNLDETYNSLLYASRVRTIVNDPSKHIS 344
>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppcp
Length = 366
Score = 197 bits (502), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 126/359 (35%), Positives = 204/359 (56%), Gaps = 33/359 (9%)
Query: 2 SNITVCARFRPLSSKERSNHGDSVCIHGIDNESFIF---KDDKEENFKFGFDRVFYEKSE 58
+++ V R RP +S+E S DS CI + + K KE F FD ++ +
Sbjct: 4 ASVKVAVRVRPFNSREMSR--DSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTS 61
Query: 59 --------QAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSMEGPSILACDEQKKG 110
Q +V+ + +++ AF G N + YGQTGAGK+++M G ++ ++G
Sbjct: 62 PEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQ----EKDQQG 117
Query: 111 LLQRTVDELFDCMK-SSDASVKFTIKLSMVEIYMEKVRDLFDL-SRDNIQIKESRVQGIL 168
++ + ++LF + +++ ++ +++++S +EIY E+VRDL + ++ N++++E + G
Sbjct: 118 IIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPY 177
Query: 169 LSGVTEIYVFNSAEALQSLASGISNRAVGETQMNMASSRSHCIY--IFTVQQELTKEKRV 226
+ ++++ V + + + SG R V T MN SSRSH ++ IFT Q+ E +
Sbjct: 178 VEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFT-QKRHDAETNI 236
Query: 227 ---KAGKLLLVDLAGSEKAEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSPGKAFH- 282
K K+ LVDLAGSE+A+ TGA+G L+E INKSL+ LG VISAL G +
Sbjct: 237 TTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNK 296
Query: 283 -------IPYRDSKLTRILQDALGGNSRTALLCCCSPSTSNSAESLSTLRFGTRAKHIK 334
IPYRDS LT +L++ LGGNSRTA++ SP+ N E+LSTLR+ RAK I+
Sbjct: 297 KKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIR 355
>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFW|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFX|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-mg-alfx
pdb|1VFZ|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-Mg-Vo4
pdb|2ZFI|A Chain A, Crystal Structure Of The Kif1a Motor Domain Before Mg
Release
pdb|2ZFJ|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-1
pdb|2ZFK|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-2
pdb|2ZFL|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-3
pdb|2ZFM|A Chain A, Crystal Structure Of The Kif1a Motor Domain After Mg
Release
Length = 366
Score = 197 bits (501), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 126/359 (35%), Positives = 204/359 (56%), Gaps = 33/359 (9%)
Query: 2 SNITVCARFRPLSSKERSNHGDSVCIHGIDNESFIF---KDDKEENFKFGFDRVFYEKSE 58
+++ V R RP +S+E S DS CI + + K KE F FD ++ +
Sbjct: 4 ASVKVAVRVRPFNSREMSR--DSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTS 61
Query: 59 --------QAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSMEGPSILACDEQKKG 110
Q +V+ + +++ AF G N + YGQTGAGK+++M G ++ ++G
Sbjct: 62 PEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQ----EKDQQG 117
Query: 111 LLQRTVDELFDCMK-SSDASVKFTIKLSMVEIYMEKVRDLFDL-SRDNIQIKESRVQGIL 168
++ + ++LF + +++ ++ +++++S +EIY E+VRDL + ++ N++++E + G
Sbjct: 118 IIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPY 177
Query: 169 LSGVTEIYVFNSAEALQSLASGISNRAVGETQMNMASSRSHCIY--IFTVQQELTKEKRV 226
+ ++++ V + + + SG R V T MN SSRSH ++ IFT Q+ E +
Sbjct: 178 VEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFT-QKRHDAETNI 236
Query: 227 ---KAGKLLLVDLAGSEKAEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSPGKAFH- 282
K K+ LVDLAGSE+A+ TGA+G L+E INKSL+ LG VISAL G +
Sbjct: 237 TTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNK 296
Query: 283 -------IPYRDSKLTRILQDALGGNSRTALLCCCSPSTSNSAESLSTLRFGTRAKHIK 334
IPYRDS LT +L++ LGGNSRTA++ SP+ N E+LSTLR+ RAK I+
Sbjct: 297 KKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIR 355
>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|C Chain C, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|C Chain C, Kif1a Head-Microtubule Complex Structure In Adp-Form
Length = 394
Score = 197 bits (500), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 126/359 (35%), Positives = 204/359 (56%), Gaps = 33/359 (9%)
Query: 2 SNITVCARFRPLSSKERSNHGDSVCIHGIDNESFIF---KDDKEENFKFGFDRVFYEKSE 58
+++ V R RP +S+E S DS CI + + K KE F FD ++ +
Sbjct: 20 ASVKVAVRVRPFNSREMSR--DSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTS 77
Query: 59 --------QAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSMEGPSILACDEQKKG 110
Q +V+ + +++ AF G N + YGQTGAGK+++M G ++ ++G
Sbjct: 78 PEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQ----EKDQQG 133
Query: 111 LLQRTVDELFDCMK-SSDASVKFTIKLSMVEIYMEKVRDLFDL-SRDNIQIKESRVQGIL 168
++ + ++LF + +++ ++ +++++S +EIY E+VRDL + ++ N++++E + G
Sbjct: 134 IIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPY 193
Query: 169 LSGVTEIYVFNSAEALQSLASGISNRAVGETQMNMASSRSHCIY--IFTVQQELTKEKRV 226
+ ++++ V + + + SG R V T MN SSRSH ++ IFT Q+ E +
Sbjct: 194 VEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFT-QKRHDAETNI 252
Query: 227 ---KAGKLLLVDLAGSEKAEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSPGKAFH- 282
K K+ LVDLAGSE+A+ TGA+G L+E INKSL+ LG VISAL G +
Sbjct: 253 TTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNK 312
Query: 283 -------IPYRDSKLTRILQDALGGNSRTALLCCCSPSTSNSAESLSTLRFGTRAKHIK 334
IPYRDS LT +L++ LGGNSRTA++ SP+ N E+LSTLR+ RAK I+
Sbjct: 313 KKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIR 371
>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Adp
Length = 367
Score = 196 bits (499), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 126/359 (35%), Positives = 204/359 (56%), Gaps = 33/359 (9%)
Query: 2 SNITVCARFRPLSSKERSNHGDSVCIHGIDNESFIF---KDDKEENFKFGFDRVFYEKSE 58
+++ V R RP +S+E S DS CI + + K KE F FD ++ +
Sbjct: 4 ASVKVAVRVRPFNSREMSR--DSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTS 61
Query: 59 --------QAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSMEGPSILACDEQKKG 110
Q +V+ + +++ AF G N + YGQTGAGK+++M G ++ ++G
Sbjct: 62 PEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQ----EKDQQG 117
Query: 111 LLQRTVDELFDCMK-SSDASVKFTIKLSMVEIYMEKVRDLFDL-SRDNIQIKESRVQGIL 168
++ + ++LF + +++ ++ +++++S +EIY E+VRDL + ++ N++++E + G
Sbjct: 118 IIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPY 177
Query: 169 LSGVTEIYVFNSAEALQSLASGISNRAVGETQMNMASSRSHCIY--IFTVQQELTKEKRV 226
+ ++++ V + + + SG R V T MN SSRSH ++ IFT Q+ E +
Sbjct: 178 VEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFT-QKRHDAETNI 236
Query: 227 ---KAGKLLLVDLAGSEKAEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSPGKAFH- 282
K K+ LVDLAGSE+A+ TGA+G L+E INKSL+ LG VISAL G +
Sbjct: 237 TTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNK 296
Query: 283 -------IPYRDSKLTRILQDALGGNSRTALLCCCSPSTSNSAESLSTLRFGTRAKHIK 334
IPYRDS LT +L++ LGGNSRTA++ SP+ N E+LSTLR+ RAK I+
Sbjct: 297 KKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIR 355
>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding
Protein
pdb|3CNZ|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3CNZ|B Chain B, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|C Chain C, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
Length = 369
Score = 189 bits (481), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 124/350 (35%), Positives = 188/350 (53%), Gaps = 19/350 (5%)
Query: 4 ITVCARFRPLSSKERSNHGDSVCIHGIDNESF--IFKDDKEENFKFGFDRVFYEKSEQAE 61
I V R RPL KE + I +D + ++KDDK + + +DRVF + Q +
Sbjct: 7 IRVYCRLRPLCEKEIIAK-ERNAIRSVDEFTVEHLWKDDKAK--QHMYDRVFDGNATQDD 63
Query: 62 VFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTVDELFD 121
VFE +++ A +G N + YGQTG+GKTF++ G + GL R + ELF
Sbjct: 64 VFEDTKY-LVQSAVDGYNVCIFAYGQTGSGKTFTIYGA------DSNPGLTPRAMSELFR 116
Query: 122 CMKSSDASVKFTIKLSMVEIYMEKVRDLF---DLSRDNIQIKESRVQGILLSGVTEIYVF 178
MK F++K MVE+Y + + DL R + IK+ + + VT + +
Sbjct: 117 IMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKKDSKGMVSVENVTVVSIS 176
Query: 179 NSAEALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQELTKEKRVKAGKLLLVDLAG 238
E + G R T MN SSRSH I ++ + + + GKL VDLAG
Sbjct: 177 TYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQTQAIARGKLSFVDLAG 236
Query: 239 SEKAEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSPGKAFHIPYRDSKLTRILQDAL 298
SE+ +K+G+ G L+EA++INKSLSALG+VISAL+ G+ HIPYR+ KLT ++ D+L
Sbjct: 237 SERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGNQ----HIPYRNHKLTMLMSDSL 292
Query: 299 GGNSRTALLCCCSPSTSNSAESLSTLRFGTRAKHIKASPHAHCSKESNAK 348
GGN++T + SP+ SN E+ ++L + +R + I P + S + A+
Sbjct: 293 GGNAKTLMFVNISPAESNLDETHNSLTYASRVRSIVNDPSKNVSSKEVAR 342
>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex
With Adp
Length = 330
Score = 187 bits (474), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 121/338 (35%), Positives = 189/338 (55%), Gaps = 19/338 (5%)
Query: 3 NITVCARFRPLSSKE-RSNHGDSVCIHGIDNESFIFKDDKEENFKFGFDRVFYEKSEQAE 61
NI V AR RP++ ++ + D++S I K + F D+VF ++ Q +
Sbjct: 5 NIRVIARVRPVTKEDGEGPEATNAVTFDADDDSIIHLLHKGKPVSFELDKVFSPQASQQD 64
Query: 62 VFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTVDELFD 121
VF+ + ++ +G N + YGQTGAGKT++MEG + + G+ QR + LF
Sbjct: 65 VFQEVQ-ALVTSCIDGFNVCIFAYGQTGAGKTYTMEGTA------ENPGINQRALQLLFS 117
Query: 122 CMKSSDASVKFTIKLSMVEIYMEKVRDLFDLSRDNIQIKESRV-----QGILLSGVTEIY 176
++ + ++TI +S EIY E +RDL L ++ + E R+ + + G+TE
Sbjct: 118 EVQEKASDWEYTITVSAAEIYNEVLRDL--LGKEPQEKLEIRLCPDGSGQLYVPGLTEFQ 175
Query: 177 VFNSAEALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQELTKEKRVKAGKLLLVDL 236
V + + + G +NR T +N SSRSH + I TV+ GKL LVDL
Sbjct: 176 VQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCSTGLRTTGKLNLVDL 235
Query: 237 AGSEKAEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSPGKAFHIPYRDSKLTRILQD 296
AGSE+ K+GAEG L EA+ INKSLSALG+VI+AL + H+P+R+SKLT +LQD
Sbjct: 236 AGSERVGKSGAEGSRLREAQHINKSLSALGDVIAALRS----RQGHVPFRNSKLTYLLQD 291
Query: 297 ALGGNSRTALLCCCSPSTSNSAESLSTLRFGTRAKHIK 334
+L G+S+T ++ SP N++E+L +L+F R + ++
Sbjct: 292 SLSGDSKTLMVVQVSPVEKNTSETLYSLKFAERVRSVE 329
>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|B Chain B, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|C Chain C, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|D Chain D, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
Length = 443
Score = 179 bits (454), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 113/329 (34%), Positives = 180/329 (54%), Gaps = 45/329 (13%)
Query: 43 ENFKFGFDRVFYEKSEQAE-------VFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFS 95
E F FD+ F+ + + E V++ L + F G + + YGQTG+GK+++
Sbjct: 94 EEKSFTFDKSFWSHNTEDEHYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYT 153
Query: 96 MEGPSILACDEQKKGLLQRTVDELFDCMKSSD---ASVKFTIKLSMVEIYMEKVRDLFDL 152
M G + GL+ RT ++LF + S+ ++ + +K+S E+Y E VRDL
Sbjct: 154 MMG------TPDQPGLIPRTCEDLFQRIASAQDETPNISYNVKVSYFEVYNEHVRDLLAP 207
Query: 153 SRDN-----IQIKESRVQGILLSGVTEIYVFNSAEALQSLASGISNRAVGETQMNMASSR 207
N ++++ES +G + +TE+ V E ++ + G +R V T+MN SSR
Sbjct: 208 VVPNKPPYYLKVRESPTEGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMNDTSSR 267
Query: 208 SHCIYIFTVQQ---EL-TKEKRVKAGKLLLVDLAGSEKAEKTGAEGKVLEEAKTINKSLS 263
SH ++ ++Q +L T + ++ ++ LVDLAGSE+A+ T A G+ L E INKSL+
Sbjct: 268 SHAVFTIMLKQIHHDLETDDTTERSSRIRLVDLAGSERAKSTEATGQRLREGSNINKSLT 327
Query: 264 ALGNVISALTCG-----------------SPGKAFH-IPYRDSKLTRILQDALGGNSRTA 305
LG VI+AL +PG A +PYRDS LT +L+D+LGGNS+TA
Sbjct: 328 TLGRVIAALADPKSSASRPSSPVKSGRGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTA 387
Query: 306 LLCCCSPSTSNSAESLSTLRFGTRAKHIK 334
++ C SP+ + E+LSTLR+ +AK I+
Sbjct: 388 MIACISPTDYD--ETLSTLRYADQAKRIR 414
>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In
Complex With Adp
Length = 359
Score = 168 bits (425), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 109/302 (36%), Positives = 172/302 (56%), Gaps = 19/302 (6%)
Query: 39 DDKEENFKFGFDRVFYEKSEQAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSMEG 98
++++ ++ F D V ++ S Q V+E +A ++ A +G NGT++ YGQTGAGKT++M G
Sbjct: 66 NNQQTDWSFKLDGVLHDAS-QDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMG 124
Query: 99 PSILACDEQKKGLLQRTVDELFDCMKSSDASVKFTIKLSMVEIYMEKVRDLFDL------ 152
+ + + +G+L R + ++F ++ T+++S +EIY E + DL
Sbjct: 125 AT---ENYKHRGILPRALQQVFRMIEERPTHA-ITVRVSYLEIYNESLFDLLSTLPYVGP 180
Query: 153 SRDNIQIKESRVQGILLSGVTEIYVFNSAEALQSLASGISNRAVGETQMNMASSRSHCIY 212
S + I E+ QG+ + G++ +A L G +NR + MN SSRSHCI+
Sbjct: 181 SVTPMTIVENP-QGVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIF 239
Query: 213 IFTVQ---QELTKEKRVKAGKLLLVDLAGSEKAEKTGAEGKVLEEAKTINKSLSALGNVI 269
++ + L++EK + + K+ LVDLAGSE+ K+G+EG+VL+EA INKSLS L I
Sbjct: 240 TIYLEAHSRTLSEEKYITS-KINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAI 298
Query: 270 SALTCGSPGKAFHIPYRDSKLTRILQDALGGNSRTALLCCCSPSTSNSAESLSTLRFGTR 329
AL K HIP+R KLT L+D+LGGN L+ + E+LS+LRF +R
Sbjct: 299 IAL---GDQKRDHIPFRQCKLTHALKDSLGGNCNMVLVTNIYGEAAQLEETLSSLRFASR 355
Query: 330 AK 331
K
Sbjct: 356 MK 357
>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster
Length = 420
Score = 166 bits (419), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 119/336 (35%), Positives = 180/336 (53%), Gaps = 30/336 (8%)
Query: 3 NITVCARFRP-LSSKER------SNHGDS-VCIHGIDNESFIFKDDKEENFKFGFDRVFY 54
NI V R RP L S+E + H +S V + ID ++ K F FD+VF+
Sbjct: 68 NIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQA----KSKMGQQIFSFDQVFH 123
Query: 55 EKSEQAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSMEGPSILACDEQKKGLLQR 114
S Q+++FE ++ P+I+ A +G N + YGQTG+GKT++M+G + G++ R
Sbjct: 124 PLSSQSDIFEMVS-PLIQSALDGYNICIFAYGQTGSGKTYTMDGVP------ESVGVIPR 176
Query: 115 TVDELFDCMKS-SDASVKFTIKLSMVEIYMEKVRDLFDLSRDNIQIK--ESRVQGILLSG 171
TVD LFD ++ + ++ IK + +EIY E + DL + +++I+ ++ I +S
Sbjct: 177 TVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSN 236
Query: 172 VTEIYVFNSAEALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQELTKEKRVKAGKL 231
+TE V + + + NRA T N SSRSH + + +++ + G +
Sbjct: 237 ITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEISVGSI 296
Query: 232 LLVDLAGSEKAEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSPGKAFHIPYRDSKLT 291
LVDLAGSE + KT + E K IN+SLS L NVI AL K HIPYR+SKLT
Sbjct: 297 NLVDLAGSE-SPKTSTR---MTETKNINRSLSELTNVILALL----QKQDHIPYRNSKLT 348
Query: 292 RILQDALGGNSRTALLCCCSPSTSNSAESLSTLRFG 327
+L +LGGNS+T + SP ES+ +LRF
Sbjct: 349 HLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFA 384
>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|B Chain B, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|C Chain C, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|D Chain D, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
Length = 406
Score = 165 bits (418), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 120/345 (34%), Positives = 182/345 (52%), Gaps = 30/345 (8%)
Query: 3 NITVCARFRP-LSSKER------SNHGDS-VCIHGIDNESFIFKDDKEENFKFGFDRVFY 54
NI V R RP L S+E + H +S V + ID ++ K F FD+VF+
Sbjct: 54 NIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQA----KSKMGQQIFSFDQVFH 109
Query: 55 EKSEQAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSMEGPSILACDEQKKGLLQR 114
S Q+++FE ++ P+I+ A +G N + YGQTG+GKT++M+G + G++ R
Sbjct: 110 PLSSQSDIFEMVS-PLIQSALDGYNICIFAYGQTGSGKTYTMDGVP------ESVGVIPR 162
Query: 115 TVDELFDCMKS-SDASVKFTIKLSMVEIYMEKVRDLFDLSRDNIQIK--ESRVQGILLSG 171
TVD LFD ++ + ++ IK + +EIY E + DL + +++I+ ++ I +S
Sbjct: 163 TVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSN 222
Query: 172 VTEIYVFNSAEALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQELTKEKRVKAGKL 231
+TE V + + + NRA T N SSRSH + + +++ + G +
Sbjct: 223 ITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEISVGSI 282
Query: 232 LLVDLAGSEKAEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSPGKAFHIPYRDSKLT 291
LVDLAGSE + KT + E K IN+SLS L NVI AL K HIPYR+SKLT
Sbjct: 283 NLVDLAGSE-SPKTSTR---MTETKNINRSLSELTNVILALL----QKQDHIPYRNSKLT 334
Query: 292 RILQDALGGNSRTALLCCCSPSTSNSAESLSTLRFGTRAKHIKAS 336
+L +LGGNS+T + SP ES+ +LRF K +
Sbjct: 335 HLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMT 379
>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d
pdb|3U06|B Chain B, Crystal Structure Of The Kinesin-14 Ncdg347d
Length = 412
Score = 165 bits (418), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 120/345 (34%), Positives = 182/345 (52%), Gaps = 30/345 (8%)
Query: 3 NITVCARFRP-LSSKER------SNHGDS-VCIHGIDNESFIFKDDKEENFKFGFDRVFY 54
NI V R RP L S+E + H +S V + ID ++ K F FD+VF+
Sbjct: 60 NIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQA----KSKMGQQIFSFDQVFH 115
Query: 55 EKSEQAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSMEGPSILACDEQKKGLLQR 114
S Q+++FE ++ P+I+ A +G N + YGQTG+GKT++M+G + G++ R
Sbjct: 116 PLSSQSDIFEMVS-PLIQSALDGYNICIFAYGQTGSGKTYTMDGVP------ESVGVIPR 168
Query: 115 TVDELFDCMKS-SDASVKFTIKLSMVEIYMEKVRDLFDLSRDNIQIK--ESRVQGILLSG 171
TVD LFD ++ + ++ IK + +EIY E + DL + +++I+ ++ I +S
Sbjct: 169 TVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSN 228
Query: 172 VTEIYVFNSAEALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQELTKEKRVKAGKL 231
+TE V + + + NRA T N SSRSH + + +++ + G +
Sbjct: 229 ITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEISVGSI 288
Query: 232 LLVDLAGSEKAEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSPGKAFHIPYRDSKLT 291
LVDLAGSE + KT + E K IN+SLS L NVI AL K HIPYR+SKLT
Sbjct: 289 NLVDLAGSE-SPKTSTR---MTETKNINRSLSELTNVILALL----QKQDHIPYRNSKLT 340
Query: 292 RILQDALGGNSRTALLCCCSPSTSNSAESLSTLRFGTRAKHIKAS 336
+L +LGGNS+T + SP ES+ +LRF K +
Sbjct: 341 HLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMT 385
>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant
pdb|3L1C|B Chain B, Kinesin-14 Protein Ncd, T436s Mutant
Length = 383
Score = 164 bits (416), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 119/345 (34%), Positives = 182/345 (52%), Gaps = 30/345 (8%)
Query: 3 NITVCARFRP-LSSKER------SNHGDS-VCIHGIDNESFIFKDDKEENFKFGFDRVFY 54
NI V R RP L S+E + H +S V + ID ++ K F FD+VF+
Sbjct: 57 NIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQA----KSKMGQQIFSFDQVFH 112
Query: 55 EKSEQAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSMEGPSILACDEQKKGLLQR 114
S Q+++FE ++ P+I+ A +G N + YGQ+G+GKT++M+G + G++ R
Sbjct: 113 PLSSQSDIFEMVS-PLIQSALDGYNICIFAYGQSGSGKTYTMDGVP------ESVGVIPR 165
Query: 115 TVDELFDCMKS-SDASVKFTIKLSMVEIYMEKVRDLFDLSRDNIQIKESR--VQGILLSG 171
TVD LFD ++ + ++ IK + +EIY E + DL + +++I+ ++ I +S
Sbjct: 166 TVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSN 225
Query: 172 VTEIYVFNSAEALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQELTKEKRVKAGKL 231
+TE V + + + NRA T N SSRSH + + +++ + G +
Sbjct: 226 ITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEISVGSI 285
Query: 232 LLVDLAGSEKAEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSPGKAFHIPYRDSKLT 291
LVDLAGSE + KT + E K IN+SLS L NVI AL K HIPYR+SKLT
Sbjct: 286 NLVDLAGSE-SPKTSTR---MTETKNINRSLSELTNVILALL----QKQDHIPYRNSKLT 337
Query: 292 RILQDALGGNSRTALLCCCSPSTSNSAESLSTLRFGTRAKHIKAS 336
+L +LGGNS+T + SP ES+ +LRF K +
Sbjct: 338 HLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMT 382
>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To
Maltose- Binding Protein
Length = 715
Score = 164 bits (415), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 107/300 (35%), Positives = 168/300 (56%), Gaps = 25/300 (8%)
Query: 44 NFKFGFDRVFYEKSEQAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSMEGPSILA 103
N +F FD++F + VFE L+ +I+ + +G N V YGQTG+GKTF+M P+
Sbjct: 429 NLRFLFDKIFEREQSNDLVFEELS-QLIQCSLDGTNVCVFAYGQTGSGKTFTMSHPT--- 484
Query: 104 CDEQKKGLLQRTVDELF-DCMKSSDASVKFTIKLSMVEIYMEKVRDLFDLSRD---NIQI 159
G++ ++ ++F D + + +T++ +EIY E + DL + D +I
Sbjct: 485 -----NGMIPLSLKKIFNDIEELKEKGWSYTVRGKFIEIYNEAIVDLLNPKIDPNTKYEI 539
Query: 160 KESRVQG-ILLSGVTEIYVFNSAEALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQ- 217
K + G ++ V+ I + + +A+ L R+ T+ N SSRSH I+I +Q
Sbjct: 540 KHDDIAGKTTVTNVSTIDIKSPEQAITILNQANKKRSTAATKSNDHSSRSHSIFIIDLQG 599
Query: 218 -QELTKEKRVKAGKLLLVDLAGSEKAEKTGAEGKVLEEAKTINKSLSALGNVISALTC-- 274
LTKE G L L+DLAGSE+ + AEG L+E + INKSLS LG+VI +L
Sbjct: 600 YNSLTKESSY--GTLNLIDLAGSERLNNSRAEGDRLKETQAINKSLSCLGDVIHSLNLKD 657
Query: 275 GSPGKAFHIPYRDSKLTRILQDALGGNSRTALLCCCSPSTSNSAESLSTLRFGTRAKHIK 334
GS H+PYR+SKLT +L+ +LGGNS+T + SP T + E++++LRF T+ + +
Sbjct: 658 GS-----HVPYRNSKLTYLLKHSLGGNSKTLMFVNISPLTKDLNETINSLRFATKVNNTR 712
>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
pdb|1N6M|B Chain B, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
Length = 409
Score = 162 bits (411), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 119/345 (34%), Positives = 181/345 (52%), Gaps = 30/345 (8%)
Query: 3 NITVCARFRP-LSSKER------SNHGDS-VCIHGIDNESFIFKDDKEENFKFGFDRVFY 54
NI V R RP L S+E + H +S V + ID ++ K F FD+VF+
Sbjct: 57 NIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQA----KSKMGQQIFSFDQVFH 112
Query: 55 EKSEQAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSMEGPSILACDEQKKGLLQR 114
S Q+++FE ++ P+I+ A +G N + YGQTG+GKT++M+G + G++ R
Sbjct: 113 PLSSQSDIFEMVS-PLIQSALDGYNICIFAYGQTGSGKTYTMDGVP------ESVGVIPR 165
Query: 115 TVDELFDCMKS-SDASVKFTIKLSMVEIYMEKVRDLFDLSRDNIQIK--ESRVQGILLSG 171
TVD LFD ++ + ++ IK + +EIY E + DL + +++I+ ++ I +S
Sbjct: 166 TVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSN 225
Query: 172 VTEIYVFNSAEALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQELTKEKRVKAGKL 231
+TE V + + + NRA T N SSRSH + + +++ + G +
Sbjct: 226 ITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEISVGSI 285
Query: 232 LLVDLAGSEKAEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSPGKAFHIPYRDSKLT 291
LVDLAGSE + KT + E K I +SLS L NVI AL K HIPYR+SKLT
Sbjct: 286 NLVDLAGSE-SPKTSTR---MTETKNIKRSLSELTNVILALL----QKQDHIPYRNSKLT 337
Query: 292 RILQDALGGNSRTALLCCCSPSTSNSAESLSTLRFGTRAKHIKAS 336
+L +LGGNS+T + SP ES+ +LRF K +
Sbjct: 338 HLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMT 382
>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member C1
Length = 376
Score = 160 bits (404), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 114/301 (37%), Positives = 157/301 (52%), Gaps = 25/301 (8%)
Query: 47 FGFDRVFYEKSEQAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSMEGPSILACDE 106
F FDRVF S Q EVFE +A+ +++ A +G + YGQTG+GKTF+MEG D
Sbjct: 85 FSFDRVFPPGSGQDEVFEEIAM-LVQSALDGYPVCIFAYGQTGSGKTFTMEGGP--GGDP 141
Query: 107 QKKGLLQRTVDELFDCMKS-SDASVKFTIKLSMVEIYMEKVRDLFDLSRDNIQIKESRVQ 165
Q +GL+ R + LF + S ++ S VEIY E VRDL Q E ++
Sbjct: 142 QLEGLIPRALRHLFSVAQELSGQGWTYSFVASYVEIYNETVRDLLATGTRKGQGGECEIR 201
Query: 166 GILLSGVTEIYVFNS----------AEALQSLASGISNRAVGETQMNMASSRSHCIYIFT 215
G E+ V N+ +AL LA NRAV T N SSRSH ++
Sbjct: 202 -RAGPGSEELTVTNARYVPVSCEKEVDALLHLAR--QNRAVARTAQNERSSRSHSVFQLQ 258
Query: 216 VQQELTKEKRVKAGKLLLVDLAGSEKAEKTGAEG----KVLEEAKTINKSLSALGNVISA 271
+ E + L LVDLAGSE+ + A G + L E + IN SLS LG VI A
Sbjct: 259 ISGEHSSRGLQCGAPLSLVDLAGSERLDPGLALGPGERERLRETQAINSSLSTLGLVIMA 318
Query: 272 LTCGSPGKAFHIPYRDSKLTRILQDALGGNSRTALLCCCSPSTSNSAESLSTLRFGTRAK 331
L+ K H+PYR+SKLT +LQ++LGG+++ + SP N +ESL++LRF ++
Sbjct: 319 LS----NKESHVPYRNSKLTYLLQNSLGGSAKMLMFVNISPLEENVSESLNSLRFASKVN 374
Query: 332 H 332
Sbjct: 375 Q 375
>pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus
pdb|3KIN|A Chain A, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|C Chain C, Kinesin (Dimeric) From Rattus Norvegicus
Length = 238
Score = 158 bits (400), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 92/245 (37%), Positives = 135/245 (55%), Gaps = 20/245 (8%)
Query: 4 ITVCARFRPLSSKERSNHGDSVCIHGIDNESFIFKDDKEENFKFG------FDRVFYEKS 57
I V RFRPL+ E + + FI K EE G FDRV +
Sbjct: 8 IKVMCRFRPLNEAEI-----------LRGDKFIPKFKGEETVVIGQGKPYVFDRVLPPNT 56
Query: 58 EQAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTVD 117
Q +V+ A I++D G NGT+ YGQT +GKT +MEG D Q G++ R
Sbjct: 57 TQEQVYNACAKQIVKDVLEGYNGTIFAYGQTSSGKTHTMEGK---LHDPQLMGIIPRIAH 113
Query: 118 ELFDCMKSSDASVKFTIKLSMVEIYMEKVRDLFDLSRDNIQIKESRVQGILLSGVTEIYV 177
++FD + S D +++F IK+S EIY++K+RDL D+S+ N+ + E + + + G TE +V
Sbjct: 114 DIFDHIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLAVHEDKNRVPYVKGCTERFV 173
Query: 178 FNSAEALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQELTKEKRVKAGKLLLVDLA 237
+ E + + G +NR V T MN SSRSH I++ ++QE + ++ +GKL LVDLA
Sbjct: 174 SSPEEVMDVIDEGKANRHVAVTNMNEHSSRSHSIFLINIKQENVETEKKLSGKLYLVDLA 233
Query: 238 GSEKA 242
GSEK
Sbjct: 234 GSEKV 238
>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Kin10NOD IN Complex With Divalent Manganese And Adp
Length = 344
Score = 145 bits (366), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 105/306 (34%), Positives = 153/306 (50%), Gaps = 23/306 (7%)
Query: 31 DNESFIFKDDKEENFKFGFDRVFYEKSEQAEVFEFLALPIIRDAFNGMNGTVITYGQTGA 90
D +S I D+ E F FD F Q E+++ L LP++ G T + YGQTG
Sbjct: 52 DGKSLIV--DQNE---FHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGT 106
Query: 91 GKTFSMEGPSILACDEQKKGLLQRTVDELFDCMKSSDASVKFTIKL--SMVEIYMEKVRD 148
GK++SM + G+L R + ++F+ + + + K I++ S +EIY EK D
Sbjct: 107 GKSYSMGMTPPGEILPEHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFD 166
Query: 149 LFDLSRDNIQIKESRVQGILLSGVTEIYVFNSAEALQSLASGISNRAVGETQMNMASSRS 208
L S ++ + +R Q T + + + A+ L G NR V T MN SSRS
Sbjct: 167 LLG-STPHMPMVAARCQR-----CTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRS 220
Query: 209 HCIYIFTVQQELTKEKRVKAGKLLLVDLAGSEKAEKTGAEGKVLEEAKTINKSLSALGNV 268
H I V+ + T R+ +VDLAGSE +TG EG +E IN L ++ V
Sbjct: 221 HAIVTIHVKSK-THHSRMN-----IVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKV 274
Query: 269 ISALTCGSPGKAFHIPYRDSKLTRILQDALGGNSRTALLCCCSPSTSNSAESLSTLRFGT 328
+ ++ G IPYRDS LT +LQ +L S L C SP + +E+LSTLRFGT
Sbjct: 275 VMSMAAGHTV----IPYRDSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTLRFGT 330
Query: 329 RAKHIK 334
AK ++
Sbjct: 331 SAKKLR 336
>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From
Ashbya Gossypii
Length = 349
Score = 145 bits (366), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 97/303 (32%), Positives = 160/303 (52%), Gaps = 23/303 (7%)
Query: 45 FKFGFDRVFYEKSEQAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSMEGPSILAC 104
+ F FD +F E+FE + +++ + +G N + YGQTG+GKT++M + A
Sbjct: 53 YNFQFDMIFEPSHTNKEIFEEIR-QLVQSSLDGYNVCIFAYGQTGSGKTYTM----LNAG 107
Query: 105 DEQKKGLLQRTVDELFDCMKS-SDASVKFTIKLSMVEIYMEKVRDLF-DL-SRDNI-QIK 160
D G++ T+ +F + + + ++ +EIY E + DL D S DNI +I
Sbjct: 108 D----GMIPMTLSHIFKWTANLKERGWNYEMECEYIEIYNETILDLLRDFKSHDNIDEIL 163
Query: 161 ESRV---------QGILLSGVTEIYVFNSAEALQSLASGISNRAVGETQMNMASSRSHCI 211
+S+ QG ++ VT + + ++++ L R+ T+ N SSRSH +
Sbjct: 164 DSQKHDIRHDHEKQGTYITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSV 223
Query: 212 YIFTVQQELTKEKRVKAGKLLLVDLAGSEKAEKTGAEGKVLEEAKTINKSLSALGNVISA 271
++ + GKL LVDLAGSE+ + G+ L E + INKSLS LG+VI A
Sbjct: 224 FMVHINGRNLHTGETSQGKLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYA 283
Query: 272 LTCGSPGKAFHIPYRDSKLTRILQDALGGNSRTALLCCCSPSTSNSAESLSTLRFGTRAK 331
L GK + IP+R+SKLT +LQ +L G+S+T + P ++ +E+L++LRF ++
Sbjct: 284 LNTPDAGKRY-IPFRNSKLTYLLQYSLVGDSKTLMFVNIPPDPNHISETLNSLRFASKVN 342
Query: 332 HIK 334
K
Sbjct: 343 STK 345
>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Adp
pdb|3DCB|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Amppnp
pdb|3DCO|N Chain N, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
Length = 344
Score = 144 bits (363), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 105/303 (34%), Positives = 151/303 (49%), Gaps = 23/303 (7%)
Query: 31 DNESFIFKDDKEENFKFGFDRVFYEKSEQAEVFEFLALPIIRDAFNGMNGTVITYGQTGA 90
D +S I D+ E F FD F Q E+++ L LP++ G T + YGQTG
Sbjct: 52 DGKSLIV--DQNE---FHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGT 106
Query: 91 GKTFSMEGPSILACDEQKKGLLQRTVDELFDCMKSSDASVKFTIKL--SMVEIYMEKVRD 148
GK++SM + G+L R + ++F+ + + + K I++ S +EIY EK D
Sbjct: 107 GKSYSMGMTPPGEILPEHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFD 166
Query: 149 LFDLSRDNIQIKESRVQGILLSGVTEIYVFNSAEALQSLASGISNRAVGETQMNMASSRS 208
L S ++ + +R Q T + + + A+ L G NR V T MN SSRS
Sbjct: 167 LLG-STPHMPMVAARCQR-----CTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRS 220
Query: 209 HCIYIFTVQQELTKEKRVKAGKLLLVDLAGSEKAEKTGAEGKVLEEAKTINKSLSALGNV 268
H I V+ + T R+ +VDLAGSE +TG EG +E IN L ++ V
Sbjct: 221 HAIVTIHVKSK-THHSRMN-----IVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKV 274
Query: 269 ISALTCGSPGKAFHIPYRDSKLTRILQDALGGNSRTALLCCCSPSTSNSAESLSTLRFGT 328
+ ++ G IPYRDS LT +LQ +L S L C SP + +E+LSTLRFGT
Sbjct: 275 VMSMAAGHTV----IPYRDSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTLRFGT 330
Query: 329 RAK 331
AK
Sbjct: 331 SAK 333
>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1
Fused To A Synthetic Heterodimeric Coiled Coil
Length = 403
Score = 142 bits (359), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 105/346 (30%), Positives = 169/346 (48%), Gaps = 29/346 (8%)
Query: 3 NITVCARFRPLSSKERSNHGDSVCIHGIDNESFI--FKDDKEEN----FKFGFDRVFYEK 56
NI V R RP ++ + ++ D+ S + + K +N +F FD++F ++
Sbjct: 60 NIRVYLRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQ 119
Query: 57 SEQAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTV 116
+VF+ + +++ + +G N + YGQTG+GKTF+M P G++ T+
Sbjct: 120 DTNVDVFKEVG-QLVQSSLDGYNVAIFAYGQTGSGKTFTMLNPG--------DGIIPSTI 170
Query: 117 DELFDCM-KSSDASVKFTIKLSMVEIYMEKVRDLFDLSRDNIQ---------IKESRVQG 166
+F+ + K + + +EIY E + DL +N + I+ +
Sbjct: 171 SHIFNWINKLKTKGWDYKVNAEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETK 230
Query: 167 ILLSGVTEIYVFNSAEALQSLASGISN-RAVGETQMNMASSRSHCIYIFTVQQELTKEKR 225
S E ++ + + R+ T N SSRSH I+I + K
Sbjct: 231 TTTITNVTSVKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTGA 290
Query: 226 VKAGKLLLVDLAGSEKAEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSPGKA-FHIP 284
G L LVDLAGSE+ + G L E + INKSLSALG+VI AL G P HIP
Sbjct: 291 HSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSALGDVIHAL--GQPDSTKRHIP 348
Query: 285 YRDSKLTRILQDALGGNSRTALLCCCSPSTSNSAESLSTLRFGTRA 330
+R+SKLT +LQ +L G+S+T + SPS+S+ E+L++LRF ++
Sbjct: 349 FRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKV 394
>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target)
Length = 387
Score = 142 bits (357), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 111/349 (31%), Positives = 178/349 (51%), Gaps = 28/349 (8%)
Query: 4 ITVCARFRPLSSKERSNHGDSVCIHGIDNESFIFKDDKE---------ENFKFGFDRVFY 54
I VC R RPL+ +E + + + I ++ + + + EN F FD F
Sbjct: 53 ICVCVRKRPLNKQELAK--KEIDVISIPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFD 110
Query: 55 EKSEQAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSMEGPSILACDEQKKGLLQR 114
E + V+ F A P+++ F G T YGQTG+GKT +M G KG+
Sbjct: 111 ETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKAQNASKGIYAM 170
Query: 115 TVDELFDCMKSSDASVKFTIK--LSMVEIYMEKVRDLFDLSRDNIQIKESRVQGILLSGV 172
++F +K+ K ++ ++ EIY K+ DL + + +++ E Q + + G+
Sbjct: 171 ASRDVF-LLKNQPCYRKLGLEVYVTFFEIYNGKLFDLLN-KKAKLRVLEDGKQQVQVVGL 228
Query: 173 TEIYVFNSAEALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQELTKEKRVKAGKLL 232
E V ++ + ++ + G + R G+T N SSRSH + Q + + K GK
Sbjct: 229 QEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACF-----QIILRAKGRMHGKFS 283
Query: 233 LVDLAGSEK-AEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSPGKAFHIPYRDSKLT 291
LVDLAG+E+ A+ + A+ + E INKSL AL I AL KA H P+R+SKLT
Sbjct: 284 LVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRAL---GQNKA-HTPFRESKLT 339
Query: 292 RILQDA-LGGNSRTALLCCCSPSTSNSAESLSTLRFGTRAKHIKASPHA 339
++L+D+ +G NSRT ++ SP S+ +L+TLR+ R K + SPH+
Sbjct: 340 QVLRDSFIGENSRTCMIATISPGISSCEYTLNTLRYADRVKEL--SPHS 386
>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In
Complex With Adp
Length = 420
Score = 141 bits (356), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 109/346 (31%), Positives = 168/346 (48%), Gaps = 32/346 (9%)
Query: 4 ITVCARFRPLSSKERS---------NHGDSVCIH----GIDNESFIFKDDKEENFKFGFD 50
I VC R RPL+ KE D V +H +D ++ EN F FD
Sbjct: 91 ICVCVRKRPLNKKETQMKDLDVITIPSKDVVMVHEPKQKVDLTRYL------ENQTFRFD 144
Query: 51 RVFYEKSEQAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSMEGPSILACDEQKKG 110
F + + V+ F A P++ F T YGQTG+GKT +M G + KG
Sbjct: 145 YAFDDSAPNEMVYRFTARPLVETIFERGMATCFAYGQTGSGKTHTMGGDFSGKNQDCSKG 204
Query: 111 LLQRTVDELFDCMKSSD-ASVKFTIKLSMVEIYMEKVRDLFDLSRDNIQIKESRVQGILL 169
+ ++F +K + ++ + + EIY KV DL + + +++ E Q + +
Sbjct: 205 IYALAARDVFLMLKKPNYKKLELQVYATFFEIYSGKVFDLLN-RKTKLRVLEDGKQQVQV 263
Query: 170 SGVTEIYVFNSAEALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQELTKEKRVKAG 229
G+ E V + L+ + G S R G+T N SSRSH ++ Q + + K G
Sbjct: 264 VGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVF-----QIILRRKGKLHG 318
Query: 230 KLLLVDLAGSEK-AEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSPGKAFHIPYRDS 288
K L+DLAG+E+ A+ + A+ + E INKSL AL I AL P H P+R S
Sbjct: 319 KFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNKP----HTPFRAS 374
Query: 289 KLTRILQDA-LGGNSRTALLCCCSPSTSNSAESLSTLRFGTRAKHI 333
KLT++L+D+ +G NSRT ++ SP ++ +L+TLR+ R K +
Sbjct: 375 KLTQVLRDSFIGENSRTCMIATISPGMASCENTLNTLRYANRVKEL 420
>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A
Saccharomyces Cerevisiae Kinesin-Related Protein
Length = 346
Score = 140 bits (354), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 105/348 (30%), Positives = 169/348 (48%), Gaps = 29/348 (8%)
Query: 1 MSNITVCARFRPLSSKERSNHGDSVCIHGIDNESFI--FKDDKEEN----FKFGFDRVFY 54
M NI V R RP ++ + ++ D+ S + + K +N +F FD++F
Sbjct: 1 MGNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFD 60
Query: 55 EKSEQAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSMEGPSILACDEQKKGLLQR 114
++ +VF+ + +++ + +G N + YGQTG+GKTF+M P G++
Sbjct: 61 QQDTNVDVFKEVG-QLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPG--------DGIIPS 111
Query: 115 TVDELFDCM-KSSDASVKFTIKLSMVEIYMEKVRDLFDLSRDNIQ---------IKESRV 164
T+ +F+ + K + + +EIY E + DL +N + I+ +
Sbjct: 112 TISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQE 171
Query: 165 QGILLSGVTEIYVFNSAEALQSLASGISN-RAVGETQMNMASSRSHCIYIFTVQQELTKE 223
S E ++ + + R+ T N SSRSH I+I + K
Sbjct: 172 TKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKT 231
Query: 224 KRVKAGKLLLVDLAGSEKAEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSPGKA-FH 282
G L LVDLAGSE+ + G L E + INKSLS LG+VI AL G P H
Sbjct: 232 GAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHAL--GQPDSTKRH 289
Query: 283 IPYRDSKLTRILQDALGGNSRTALLCCCSPSTSNSAESLSTLRFGTRA 330
IP+R+SKLT +LQ +L G+S+T + SPS+S+ E+L++LRF ++
Sbjct: 290 IPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKV 337
>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With Mg-adp
pdb|1V8K|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With
Mg-Amppnp
Length = 410
Score = 139 bits (351), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 111/341 (32%), Positives = 170/341 (49%), Gaps = 22/341 (6%)
Query: 4 ITVCARFRPLSSKERSNHGDSV------CIHGIDNESFIFKDDKE-ENFKFGFDRVFYEK 56
I VC R RPL+ +E + V C+ + K EN F FD F E
Sbjct: 73 ICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDET 132
Query: 57 SEQAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTV 116
+ V+ F A P+++ F G T YGQTG+GKT +M G KG+
Sbjct: 133 ASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMAS 192
Query: 117 DELFDCMKSSD--ASVKFTIKLSMVEIYMEKVRDLFDLSRDNIQIKESRVQGILLSGVTE 174
++F +K+ ++ + ++ EIY KV DL + + +++ E Q + + G+ E
Sbjct: 193 RDVF-LLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLN-KKAKLRVLEDSRQQVQVVGLQE 250
Query: 175 IYVFNSAEALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQELTKEKRVKAGKLLLV 234
V + + ++ + G + R G+T N SSRSH + Q L + K GK LV
Sbjct: 251 YLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACF-----QILLRTKGRLHGKFSLV 305
Query: 235 DLAGSEK-AEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSPGKAFHIPYRDSKLTRI 293
DLAG+E+ A+ + A+ + E INKSL AL I AL KA H P+R+SKLT++
Sbjct: 306 DLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRAL---GQNKA-HTPFRESKLTQV 361
Query: 294 LQDA-LGGNSRTALLCCCSPSTSNSAESLSTLRFGTRAKHI 333
L+D+ +G NSRT ++ SP S+ +L+TLR+ R K +
Sbjct: 362 LRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKEL 402
>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex
Length = 331
Score = 139 bits (351), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 111/341 (32%), Positives = 170/341 (49%), Gaps = 22/341 (6%)
Query: 4 ITVCARFRPLSSKERSNHGDSV------CIHGIDNESFIFKDDKE-ENFKFGFDRVFYEK 56
I VC R RPL+ +E + V C+ + K EN F FD F E
Sbjct: 1 ICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDET 60
Query: 57 SEQAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTV 116
+ V+ F A P+++ F G T YGQTG+GKT +M G KG+
Sbjct: 61 ASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMAS 120
Query: 117 DELFDCMKSSD--ASVKFTIKLSMVEIYMEKVRDLFDLSRDNIQIKESRVQGILLSGVTE 174
++F +K+ ++ + ++ EIY KV DL + + +++ E Q + + G+ E
Sbjct: 121 RDVF-LLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLN-KKAKLRVLEDSRQQVQVVGLQE 178
Query: 175 IYVFNSAEALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQELTKEKRVKAGKLLLV 234
V + + ++ + G + R G+T N SSRSH + Q L + K GK LV
Sbjct: 179 YLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACF-----QILLRTKGRLHGKFSLV 233
Query: 235 DLAGSEK-AEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSPGKAFHIPYRDSKLTRI 293
DLAG+E+ A+ + A+ + E INKSL AL I AL KA H P+R+SKLT++
Sbjct: 234 DLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRAL---GQNKA-HTPFRESKLTQV 289
Query: 294 LQDA-LGGNSRTALLCCCSPSTSNSAESLSTLRFGTRAKHI 333
L+D+ +G NSRT ++ SP S+ +L+TLR+ R K +
Sbjct: 290 LRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKEL 330
>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling
Pathway For Activation Of The Motor Atpase
Length = 358
Score = 139 bits (349), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 104/346 (30%), Positives = 168/346 (48%), Gaps = 29/346 (8%)
Query: 3 NITVCARFRPLSSKERSNHGDSVCIHGIDNESFI--FKDDKEEN----FKFGFDRVFYEK 56
NI V R RP ++ + ++ D+ S + + K +N +F FD++F ++
Sbjct: 15 NIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQ 74
Query: 57 SEQAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTV 116
+VF+ + +++ + +G N + YGQTG+GKTF+M P G++ T+
Sbjct: 75 DTNVDVFKEVG-QLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPG--------DGIIPSTI 125
Query: 117 DELFDCM-KSSDASVKFTIKLSMVEIYMEKVRDLFDLSRDNIQ---------IKESRVQG 166
+F+ + K + + +EIY E + DL +N + I+ +
Sbjct: 126 SHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETK 185
Query: 167 ILLSGVTEIYVFNSAEALQSLASGISN-RAVGETQMNMASSRSHCIYIFTVQQELTKEKR 225
S E ++ + + R+ T N SSRSH I+I + K
Sbjct: 186 TTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTGA 245
Query: 226 VKAGKLLLVDLAGSEKAEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSPGKA-FHIP 284
G L LVDLAGSE+ + G L E + INKSLS LG+VI AL G P HIP
Sbjct: 246 HSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHAL--GQPDSTKRHIP 303
Query: 285 YRDSKLTRILQDALGGNSRTALLCCCSPSTSNSAESLSTLRFGTRA 330
+R+SKLT +LQ +L G+S+T + SPS+S+ E+L++LRF ++
Sbjct: 304 FRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKV 349
>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
pdb|4GKR|B Chain B, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
Length = 371
Score = 138 bits (347), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 106/352 (30%), Positives = 179/352 (50%), Gaps = 34/352 (9%)
Query: 3 NITVCARFRPLSSKERSNHGDSVCIHGIDNES----FIFKDDKEENFKFGFDRVFYEKSE 58
NI V R RP E N + + + D+++ + F FD++F ++
Sbjct: 29 NIRVYCRIRPPLPHEDDN-IEHIKVQPFDDDNGDQGMTINRGNSQVIPFKFDKIFDQQET 87
Query: 59 QAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTVDE 118
E+F+ + +I+ + +G N + YGQTG+GKT++M P G++ T++
Sbjct: 88 NDEIFKEVG-QLIQSSLDGYNVCIFAYGQTGSGKTYTMLNPG--------DGIVPATINH 138
Query: 119 LFDCM-KSSDASVKFTIKLSMVEIYMEKVRDLF----------DLSRDNI-QIK-ESRVQ 165
+F + K + + + +EIY E + DL D + D+ +I+ + ++
Sbjct: 139 IFSWIDKLAARGWSYKVSCEFIEIYNENIVDLLRSGAPSQENNDRNADSKHEIRHDQELK 198
Query: 166 GILLSGVTEIYVFNSAEALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQ--QELTKE 223
++ +T + + + L R+ T N SSRSH I+I ++ E T E
Sbjct: 199 TTYITNITTCVLDSRDTVDKVLKRANKLRSTASTAANEHSSRSHSIFIIHLEGKNEGTGE 258
Query: 224 KRVKAGKLLLVDLAGSEKAEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSP-GKAFH 282
K G L LVDLAGSE+ + G+ L E ++INKSLS LG+VI AL SP G+ H
Sbjct: 259 K--SQGILNLVDLAGSERLNSSMVVGERLRETQSINKSLSCLGDVIHALN--SPDGQKRH 314
Query: 283 IPYRDSKLTRILQDALGGNSRTALLCCCSPSTSNSAESLSTLRFGTRAKHIK 334
IP+R+SKLT +LQ +L G+S+T + SP+ + E++++LRF ++ + K
Sbjct: 315 IPFRNSKLTYLLQYSLIGSSKTLMFVNISPAALHLNETINSLRFASKVNNTK 366
>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
pdb|1F9W|B Chain B, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 136 bits (342), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 103/346 (29%), Positives = 167/346 (48%), Gaps = 29/346 (8%)
Query: 3 NITVCARFRPLSSKERSNHGDSVCIHGIDNESFI--FKDDKEEN----FKFGFDRVFYEK 56
NI V R RP ++ + ++ D+ S + + K +N +F FD++F ++
Sbjct: 4 NIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQ 63
Query: 57 SEQAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTV 116
+VF+ + +++ + +G N + YGQTG+GKTF+M P G++ T+
Sbjct: 64 DTNVDVFKEVG-QLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPG--------DGIIPSTI 114
Query: 117 DELFDCM-KSSDASVKFTIKLSMVEIYMEKVRDLFDLSRDNIQ---------IKESRVQG 166
+F+ + K + + +EIY E + DL +N + I+ +
Sbjct: 115 SHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETK 174
Query: 167 ILLSGVTEIYVFNSAEALQSLASGISN-RAVGETQMNMASSRSHCIYIFTVQQELTKEKR 225
S E ++ + + R+ T N SSRSH I+I + K
Sbjct: 175 TTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTGA 234
Query: 226 VKAGKLLLVDLAGSEKAEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSPGKA-FHIP 284
G L LVDLAGS + + G L E + INKSLS LG+VI AL G P HIP
Sbjct: 235 HSYGTLNLVDLAGSARINVSQVVGDRLRETQNINKSLSCLGDVIHAL--GQPDSTKRHIP 292
Query: 285 YRDSKLTRILQDALGGNSRTALLCCCSPSTSNSAESLSTLRFGTRA 330
+R+SKLT +LQ +L G+S+T + SPS+S+ E+L++LRF ++
Sbjct: 293 FRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKV 338
>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 135 bits (341), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 103/346 (29%), Positives = 167/346 (48%), Gaps = 29/346 (8%)
Query: 3 NITVCARFRPLSSKERSNHGDSVCIHGIDNESFI--FKDDKEEN----FKFGFDRVFYEK 56
NI V R RP ++ + ++ D+ S + + K +N +F FD++F ++
Sbjct: 4 NIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQ 63
Query: 57 SEQAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTV 116
+VF+ + +++ + +G N + YGQTG+GKTF+M P G++ T+
Sbjct: 64 DTNVDVFKEVG-QLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPG--------DGIIPSTI 114
Query: 117 DELFDCM-KSSDASVKFTIKLSMVEIYMEKVRDLFDLSRDNIQ---------IKESRVQG 166
+F+ + K + + +EIY E + DL +N + I+ +
Sbjct: 115 SHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETK 174
Query: 167 ILLSGVTEIYVFNSAEALQSLASGISN-RAVGETQMNMASSRSHCIYIFTVQQELTKEKR 225
S E ++ + + R+ T N SSRSH I+I + K
Sbjct: 175 TTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTGA 234
Query: 226 VKAGKLLLVDLAGSEKAEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSPGKA-FHIP 284
G L LVDLAGSE+ + G L E + I KSLS LG+VI AL G P HIP
Sbjct: 235 HSYGTLNLVDLAGSERINVSQVVGDRLRETQNIKKSLSCLGDVIHAL--GQPDSTKRHIP 292
Query: 285 YRDSKLTRILQDALGGNSRTALLCCCSPSTSNSAESLSTLRFGTRA 330
+R+SKLT +LQ +L G+S+T + SPS+S+ E+L++LRF ++
Sbjct: 293 FRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKV 338
>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 135 bits (340), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 103/346 (29%), Positives = 167/346 (48%), Gaps = 29/346 (8%)
Query: 3 NITVCARFRPLSSKERSNHGDSVCIHGIDNESFI--FKDDKEEN----FKFGFDRVFYEK 56
NI V R RP ++ + ++ D+ S + + K +N +F FD++F ++
Sbjct: 4 NIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQ 63
Query: 57 SEQAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTV 116
+VF+ + +++ + +G N + YGQTG+GKTF+M P G++ T+
Sbjct: 64 DTNVDVFKEVG-QLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPG--------DGIIPSTI 114
Query: 117 DELFDCM-KSSDASVKFTIKLSMVEIYMEKVRDLFDLSRDNIQ---------IKESRVQG 166
+F+ + K + + +EIY E + DL +N + I+ +
Sbjct: 115 SHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETK 174
Query: 167 ILLSGVTEIYVFNSAEALQSLASGISN-RAVGETQMNMASSRSHCIYIFTVQQELTKEKR 225
S E ++ + + R+ T N SS SH I+I + K
Sbjct: 175 TTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIHLSGSNAKTGA 234
Query: 226 VKAGKLLLVDLAGSEKAEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSPGKA-FHIP 284
G L LVDLAGSE+ + G L E + INKSLS LG+VI AL G P HIP
Sbjct: 235 HSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHAL--GQPDSTKRHIP 292
Query: 285 YRDSKLTRILQDALGGNSRTALLCCCSPSTSNSAESLSTLRFGTRA 330
+R+SKLT +LQ +L G+S+T + SPS+S+ E+L++LRF ++
Sbjct: 293 FRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKV 338
>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain
Length = 360
Score = 130 bits (326), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 100/338 (29%), Positives = 159/338 (47%), Gaps = 18/338 (5%)
Query: 4 ITVCARFRPLSSKERSNHGDSV------CIHGIDNESFIFKDDKE-ENFKFGFDRVFYEK 56
I V R RPLS E+ + C ID + K E +F D+VF +
Sbjct: 2 IKVVVRKRPLSELEKKKKDSDIITVKNNCTLYIDEPRYKVDMTKYIERHEFIVDKVFDDT 61
Query: 57 SEQAEVFEFLALPIIRDAF-NGMNGTVITYGQTGAGKTFSMEGPSILACDEQKKGLLQRT 115
+ V+E P+I D + NG + YGQTG+GKT++M G G+ Q
Sbjct: 62 VDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTMLGSQPYG-QSDTPGIFQYA 120
Query: 116 VDELFDCMKSSDASVKFTIKLSMVEIYMEKVRDLFDLSRDNIQIKESRVQGILLSGVTEI 175
++F + D I +S EIY K+ DL R + E+ + +++ + +
Sbjct: 121 AGDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLLQ-KRKMVAALENGKKEVVVKDLKIL 179
Query: 176 YVFNSAEALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQELTKEKRVKAGKLLLVD 235
V E + + G+ R +G N SSRSH I ++ K GK+ +D
Sbjct: 180 RVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLKD---INKNTSLGKIAFID 236
Query: 236 LAGSEKAEKTGAEGKVLE-EAKTINKSLSALGNVISALTCGSPGKAFHIPYRDSKLTRIL 294
LAGSE+ T ++ K + + IN+SL AL I A+ HIP+RDS+LT++L
Sbjct: 237 LAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDSDKN----HIPFRDSELTKVL 292
Query: 295 QDALGGNSRTALLCCCSPSTSNSAESLSTLRFGTRAKH 332
+D G S++ ++ SP+ S ++L+TLR+ +R K+
Sbjct: 293 RDIFVGKSKSIMIANISPTISCCEQTLNTLRYSSRVKN 330
>pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus
Length = 100
Score = 106 bits (265), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 54/80 (67%), Positives = 61/80 (76%), Gaps = 3/80 (3%)
Query: 255 AKTINKSLSALGNVISALTCGSPGKAFHIPYRDSKLTRILQDALGGNSRTALLCCCSPST 314
AK INKSLSALGNVISAL + G H+PYRDSK+TRILQD+L GN RT ++ CCSPS
Sbjct: 1 AKNINKSLSALGNVISAL---AEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSV 57
Query: 315 SNSAESLSTLRFGTRAKHIK 334
N AE+ STL FG RAK IK
Sbjct: 58 FNEAETKSTLMFGQRAKTIK 77
>pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|D Chain D, Kinesin (Dimeric) From Rattus Norvegicus
Length = 117
Score = 104 bits (260), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 52/76 (68%), Positives = 59/76 (77%), Gaps = 3/76 (3%)
Query: 259 NKSLSALGNVISALTCGSPGKAFHIPYRDSKLTRILQDALGGNSRTALLCCCSPSTSNSA 318
NKSLSALGNVISAL + G H+PYRDSK+TRILQD+LGGN RT ++ CCSPS N A
Sbjct: 1 NKSLSALGNVISAL---AEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEA 57
Query: 319 ESLSTLRFGTRAKHIK 334
E+ STL FG RAK IK
Sbjct: 58 ETKSTLMFGQRAKTIK 73
>pdb|2XG7|A Chain A, Crystal Structure Of Bst2-Tetherin Ectodomain Expressed In
Hek293t Cells
pdb|2XG7|C Chain C, Crystal Structure Of Bst2-Tetherin Ectodomain Expressed In
Hek293t Cells
Length = 103
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 411 ITSLQHMVEDLVRAVEELKSENKALKTRIAAAG 443
IT+L H ++D VE L+ EN+ L RIA G
Sbjct: 70 ITTLNHKLQDASAEVERLRRENQVLSVRIADKG 102
>pdb|3MQC|A Chain A, Crystal Structure Of Ectodomain Of Bst-2TETHERINCD317
(P21)
pdb|3MQC|B Chain B, Crystal Structure Of Ectodomain Of Bst-2TETHERINCD317
(P21)
pdb|3MQC|C Chain C, Crystal Structure Of Ectodomain Of Bst-2TETHERINCD317
(P21)
pdb|3MQC|D Chain D, Crystal Structure Of Ectodomain Of Bst-2TETHERINCD317
(P21)
Length = 121
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 411 ITSLQHMVEDLVRAVEELKSENKALKTRIA 440
IT+L H ++D VE L+ EN+ L RIA
Sbjct: 80 ITTLNHKLQDASAEVERLRRENQVLSVRIA 109
>pdb|3MQB|A Chain A, Crystal Structure Of Ectodomain Of Bst-2TETHERINCD317 (C2)
pdb|3MQB|B Chain B, Crystal Structure Of Ectodomain Of Bst-2TETHERINCD317 (C2)
pdb|3MQB|E Chain E, Crystal Structure Of Ectodomain Of Bst-2TETHERINCD317 (C2)
pdb|3MQB|F Chain F, Crystal Structure Of Ectodomain Of Bst-2TETHERINCD317 (C2)
Length = 121
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 411 ITSLQHMVEDLVRAVEELKSENKALKTRIA 440
IT+L H ++D VE L+ EN+ L RIA
Sbjct: 80 ITTLNHKLQDASAEVERLRRENQVLSVRIA 109
>pdb|3MQ7|A Chain A, Crystal Structure Of Ectodomain Mutant Of
Bst-2TETHERINCD317
pdb|3MQ7|B Chain B, Crystal Structure Of Ectodomain Mutant Of
Bst-2TETHERINCD317
pdb|3MQ7|C Chain C, Crystal Structure Of Ectodomain Mutant Of
Bst-2TETHERINCD317
pdb|3MQ7|D Chain D, Crystal Structure Of Ectodomain Mutant Of
Bst-2TETHERINCD317
pdb|3MQ7|E Chain E, Crystal Structure Of Ectodomain Mutant Of
Bst-2TETHERINCD317
pdb|3MQ7|F Chain F, Crystal Structure Of Ectodomain Mutant Of
Bst-2TETHERINCD317
pdb|3MQ7|G Chain G, Crystal Structure Of Ectodomain Mutant Of
Bst-2TETHERINCD317
pdb|3MQ7|H Chain H, Crystal Structure Of Ectodomain Mutant Of
Bst-2TETHERINCD317
pdb|3MQ7|I Chain I, Crystal Structure Of Ectodomain Mutant Of
Bst-2TETHERINCD317
pdb|3MQ7|J Chain J, Crystal Structure Of Ectodomain Mutant Of
Bst-2TETHERINCD317
pdb|3MQ7|K Chain K, Crystal Structure Of Ectodomain Mutant Of
Bst-2TETHERINCD317
pdb|3MQ7|L Chain L, Crystal Structure Of Ectodomain Mutant Of
Bst-2TETHERINCD317
Length = 121
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 411 ITSLQHMVEDLVRAVEELKSENKALKTRIA 440
IT+L H ++D VE L+ EN+ L RIA
Sbjct: 80 ITTLNHKLQDASAEVERLRRENQVLSVRIA 109
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 20/88 (22%)
Query: 36 IFKDDKEENF-KFGFDRVFYEKSEQAEVFEFLALPIIRDAFNGMNGT-----VITYGQTG 89
I ++D+EE+ + G+D V + + A++ E + LP+ A G ++ YG G
Sbjct: 189 IKREDEEESLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPG 248
Query: 90 AGKT--------------FSMEGPSILA 103
GKT F + GP I++
Sbjct: 249 TGKTLIARAVANETGAFFFLINGPEIMS 276
>pdb|3NWH|A Chain A, Crystal Structure Of Bst2TETHERIN
pdb|3NWH|B Chain B, Crystal Structure Of Bst2TETHERIN
pdb|3NWH|C Chain C, Crystal Structure Of Bst2TETHERIN
pdb|3NWH|D Chain D, Crystal Structure Of Bst2TETHERIN
Length = 112
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 411 ITSLQHMVEDLVRAVEELKSENKALKTRIA 440
IT+L H ++D VE L+ EN+ L RIA
Sbjct: 80 ITTLNHKLQDASAEVERLRRENQVLSVRIA 109
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 20/88 (22%)
Query: 36 IFKDDKEENF-KFGFDRVFYEKSEQAEVFEFLALPIIRDAFNGMNGT-----VITYGQTG 89
I ++D+EE+ + G+D V + + A++ E + LP+ A G ++ YG G
Sbjct: 189 IKREDEEESLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPG 248
Query: 90 AGKT--------------FSMEGPSILA 103
GKT F + GP I++
Sbjct: 249 TGKTLIARAVANETGAFFFLINGPEIMS 276
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,437,033
Number of Sequences: 62578
Number of extensions: 470811
Number of successful extensions: 1587
Number of sequences better than 100.0: 71
Number of HSP's better than 100.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1319
Number of HSP's gapped (non-prelim): 74
length of query: 483
length of database: 14,973,337
effective HSP length: 103
effective length of query: 380
effective length of database: 8,527,803
effective search space: 3240565140
effective search space used: 3240565140
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)