Query 047385
Match_columns 483
No_of_seqs 305 out of 1490
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 10:35:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047385.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047385hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0245 Kinesin-like protein [ 100.0 4.6E-95 1E-99 779.4 30.4 338 1-344 3-359 (1221)
2 KOG0243 Kinesin-like protein [ 100.0 1.9E-93 4.1E-98 780.4 35.3 335 2-343 49-400 (1041)
3 KOG4280 Kinesin-like protein [ 100.0 7.5E-94 1.6E-98 754.7 27.0 333 3-344 6-347 (574)
4 KOG0240 Kinesin (SMY1 subfamil 100.0 3.8E-90 8.2E-95 709.3 34.8 337 1-345 6-343 (607)
5 cd01373 KISc_KLP2_like Kinesin 100.0 1.6E-86 3.4E-91 679.5 36.5 329 2-333 1-337 (337)
6 cd01370 KISc_KIP3_like Kinesin 100.0 2E-86 4.3E-91 679.1 35.4 323 3-333 1-338 (338)
7 PLN03188 kinesin-12 family pro 100.0 4.3E-86 9.3E-91 728.8 37.8 334 2-344 98-445 (1320)
8 KOG0242 Kinesin-like protein [ 100.0 3.1E-85 6.6E-90 713.6 31.6 334 2-346 6-344 (675)
9 cd01368 KISc_KIF23_like Kinesi 100.0 5.8E-84 1.3E-88 662.3 35.4 316 3-331 2-345 (345)
10 cd01365 KISc_KIF1A_KIF1B Kines 100.0 6.3E-83 1.4E-87 657.9 37.6 331 2-340 1-356 (356)
11 KOG0241 Kinesin-like protein [ 100.0 1.2E-83 2.7E-88 680.2 30.7 335 2-344 4-362 (1714)
12 cd01364 KISc_BimC_Eg5 Kinesin 100.0 4.6E-82 9.9E-87 650.8 37.2 334 2-342 2-352 (352)
13 cd01369 KISc_KHC_KIF5 Kinesin 100.0 3.5E-81 7.5E-86 637.8 36.7 325 1-333 1-325 (325)
14 cd01367 KISc_KIF2_like Kinesin 100.0 7.5E-81 1.6E-85 634.1 34.4 313 2-331 1-322 (322)
15 cd01371 KISc_KIF3 Kinesin moto 100.0 1.6E-80 3.4E-85 634.6 36.3 325 2-333 1-333 (333)
16 cd01372 KISc_KIF4 Kinesin moto 100.0 2E-80 4.3E-85 636.3 36.0 327 3-334 2-341 (341)
17 cd01376 KISc_KID_like Kinesin 100.0 2.9E-80 6.2E-85 629.2 35.4 312 3-331 1-319 (319)
18 cd01374 KISc_CENP_E Kinesin mo 100.0 5.7E-80 1.2E-84 627.8 35.1 317 3-333 1-321 (321)
19 cd01366 KISc_C_terminal Kinesi 100.0 2.5E-78 5.4E-83 617.8 36.9 321 2-335 2-328 (329)
20 cd01375 KISc_KIF9_like Kinesin 100.0 1.7E-78 3.7E-83 619.8 34.9 316 3-331 1-334 (334)
21 smart00129 KISc Kinesin motor, 100.0 3.7E-76 8.1E-81 603.2 37.6 329 3-340 1-335 (335)
22 KOG0239 Kinesin (KAR3 subfamil 100.0 2E-77 4.4E-82 650.0 24.4 326 2-339 314-646 (670)
23 cd00106 KISc Kinesin motor dom 100.0 1.3E-74 2.8E-79 590.1 37.2 319 3-331 1-328 (328)
24 KOG0247 Kinesin-like protein [ 100.0 2.9E-74 6.2E-79 604.9 35.2 331 2-342 31-445 (809)
25 PF00225 Kinesin: Kinesin moto 100.0 1.5E-74 3.3E-79 591.2 26.4 318 9-333 1-335 (335)
26 KOG0246 Kinesin-like protein [ 100.0 2E-73 4.3E-78 583.9 29.8 327 3-338 209-546 (676)
27 KOG0244 Kinesin-like protein [ 100.0 1.4E-72 3E-77 607.9 11.6 325 10-344 1-328 (913)
28 COG5059 KIP1 Kinesin-like prot 100.0 5.7E-65 1.2E-69 549.5 33.1 290 44-341 55-344 (568)
29 cd01363 Motor_domain Myosin an 100.0 1.8E-52 3.8E-57 394.0 18.9 176 62-312 8-186 (186)
30 COG5059 KIP1 Kinesin-like prot 98.0 1.4E-08 3E-13 111.0 -14.3 250 2-273 305-566 (568)
31 COG0556 UvrB Helicase subunit 95.7 0.017 3.7E-07 61.7 5.8 95 45-147 3-101 (663)
32 PF00308 Bac_DnaA: Bacterial d 94.4 0.015 3.2E-07 56.3 0.8 51 45-98 3-53 (219)
33 PRK06893 DNA replication initi 93.8 0.046 9.9E-07 53.1 3.0 48 45-98 11-58 (229)
34 COG2805 PilT Tfp pilus assembl 93.8 0.035 7.6E-07 55.8 2.1 30 68-97 114-143 (353)
35 PRK06620 hypothetical protein; 92.8 0.055 1.2E-06 52.1 1.7 50 44-97 10-62 (214)
36 PRK09087 hypothetical protein; 91.9 0.11 2.4E-06 50.5 2.5 48 44-97 15-62 (226)
37 COG2804 PulE Type II secretory 91.7 0.085 1.8E-06 56.5 1.7 30 69-98 248-277 (500)
38 PRK12377 putative replication 91.6 0.13 2.7E-06 50.9 2.7 51 46-98 70-120 (248)
39 PRK08084 DNA replication initi 91.2 0.15 3.3E-06 49.7 2.8 48 45-98 17-64 (235)
40 PRK14086 dnaA chromosomal repl 90.9 0.13 2.8E-06 56.9 2.1 51 45-98 283-333 (617)
41 PRK05642 DNA replication initi 90.9 0.15 3.3E-06 49.7 2.5 47 45-98 14-64 (234)
42 PRK08116 hypothetical protein; 90.7 0.17 3.6E-06 50.6 2.5 52 45-98 80-133 (268)
43 PRK06526 transposase; Provisio 90.4 0.13 2.7E-06 51.1 1.4 41 53-98 77-117 (254)
44 PRK14088 dnaA chromosomal repl 90.3 0.18 3.9E-06 54.0 2.5 52 43-98 98-149 (440)
45 PRK07952 DNA replication prote 90.1 0.26 5.7E-06 48.5 3.3 52 45-98 67-118 (244)
46 TIGR00362 DnaA chromosomal rep 89.7 0.23 5E-06 52.4 2.8 52 44-98 104-155 (405)
47 PRK14087 dnaA chromosomal repl 89.6 0.23 5.1E-06 53.3 2.8 50 46-98 111-160 (450)
48 PRK00149 dnaA chromosomal repl 89.1 0.25 5.5E-06 52.9 2.6 52 44-98 116-167 (450)
49 PRK06835 DNA replication prote 88.7 0.19 4.1E-06 51.7 1.2 36 61-98 167-202 (329)
50 PF04851 ResIII: Type III rest 88.4 0.3 6.6E-06 44.3 2.3 37 58-98 7-44 (184)
51 COG0593 DnaA ATPase involved i 88.2 0.31 6.7E-06 51.4 2.4 52 43-98 80-132 (408)
52 PRK08727 hypothetical protein; 88.1 0.26 5.6E-06 48.0 1.7 46 45-98 14-60 (233)
53 cd00009 AAA The AAA+ (ATPases 88.1 0.4 8.6E-06 41.2 2.7 19 78-96 18-36 (151)
54 PRK08939 primosomal protein Dn 87.9 0.31 6.6E-06 49.7 2.1 51 47-98 124-175 (306)
55 PF13245 AAA_19: Part of AAA d 87.7 0.29 6.3E-06 39.1 1.5 27 71-98 3-29 (76)
56 PRK08181 transposase; Validate 87.6 0.38 8.3E-06 48.1 2.5 21 76-98 105-125 (269)
57 TIGR03420 DnaA_homol_Hda DnaA 87.5 0.41 8.9E-06 45.7 2.7 48 45-98 10-57 (226)
58 PRK00411 cdc6 cell division co 87.1 0.56 1.2E-05 48.9 3.6 21 76-96 52-72 (394)
59 TIGR02928 orc1/cdc6 family rep 87.0 0.52 1.1E-05 48.6 3.3 21 76-96 37-57 (365)
60 PTZ00454 26S protease regulato 87.0 0.37 8.1E-06 50.9 2.2 51 46-96 141-196 (398)
61 TIGR01242 26Sp45 26S proteasom 86.9 0.65 1.4E-05 48.3 3.9 51 46-96 118-173 (364)
62 TIGR00631 uvrb excinuclease AB 86.5 0.82 1.8E-05 51.4 4.7 93 47-147 2-98 (655)
63 PRK10436 hypothetical protein; 86.5 0.33 7.1E-06 52.3 1.4 29 70-98 209-237 (462)
64 PRK08903 DnaA regulatory inact 86.3 0.65 1.4E-05 44.6 3.3 49 45-98 13-61 (227)
65 PTZ00361 26 proteosome regulat 86.1 0.74 1.6E-05 49.2 3.9 92 5-96 128-234 (438)
66 PF05673 DUF815: Protein of un 86.0 0.71 1.5E-05 45.4 3.3 130 46-212 23-155 (249)
67 COG1484 DnaC DNA replication p 85.9 0.69 1.5E-05 45.8 3.3 51 45-98 74-124 (254)
68 TIGR02538 type_IV_pilB type IV 85.3 0.37 8E-06 53.2 1.2 29 70-98 307-335 (564)
69 TIGR02533 type_II_gspE general 84.5 0.51 1.1E-05 51.2 1.8 29 70-98 233-261 (486)
70 TIGR01420 pilT_fam pilus retra 84.1 0.55 1.2E-05 48.5 1.8 30 69-98 112-141 (343)
71 cd00046 DEXDc DEAD-like helica 84.0 0.43 9.3E-06 40.5 0.8 17 82-98 3-19 (144)
72 COG1474 CDC6 Cdc6-related prot 83.9 0.91 2E-05 47.4 3.3 25 72-96 34-59 (366)
73 TIGR02449 conserved hypothetic 83.7 5.6 0.00012 30.9 6.7 57 412-469 3-59 (65)
74 PF00270 DEAD: DEAD/DEAH box h 83.5 0.64 1.4E-05 41.8 1.7 26 71-98 8-33 (169)
75 cd01131 PilT Pilus retraction 83.5 0.47 1E-05 45.0 0.8 18 80-97 2-19 (198)
76 TIGR02524 dot_icm_DotB Dot/Icm 83.4 0.63 1.4E-05 48.5 1.9 25 74-98 129-153 (358)
77 TIGR02525 plasmid_TraJ plasmid 83.1 0.68 1.5E-05 48.5 2.0 28 70-98 141-168 (372)
78 PRK06921 hypothetical protein; 83.0 0.96 2.1E-05 45.1 2.9 32 67-98 102-136 (266)
79 PF13401 AAA_22: AAA domain; P 82.9 0.4 8.7E-06 41.4 0.2 18 79-96 4-21 (131)
80 PF00437 T2SE: Type II/IV secr 82.9 0.55 1.2E-05 46.4 1.1 19 79-97 127-145 (270)
81 COG5008 PilU Tfp pilus assembl 82.7 0.9 2E-05 45.2 2.5 35 63-97 110-145 (375)
82 smart00382 AAA ATPases associa 82.5 0.53 1.2E-05 39.8 0.8 19 80-98 3-21 (148)
83 PRK12422 chromosomal replicati 82.5 1.1 2.3E-05 48.1 3.2 53 43-98 104-160 (445)
84 PRK09183 transposase/IS protei 82.0 0.88 1.9E-05 45.1 2.2 21 76-98 101-121 (259)
85 PRK03992 proteasome-activating 81.4 1.1 2.3E-05 47.2 2.7 51 46-96 127-182 (389)
86 PF13604 AAA_30: AAA domain; P 81.4 0.8 1.7E-05 43.3 1.6 27 71-97 10-36 (196)
87 smart00053 DYNc Dynamin, GTPas 81.2 2.2 4.8E-05 41.9 4.6 53 177-242 86-138 (240)
88 KOG0989 Replication factor C, 81.2 1.3 2.8E-05 44.9 3.0 36 62-97 39-75 (346)
89 PF06005 DUF904: Protein of un 81.0 12 0.00026 29.7 7.9 37 409-445 18-54 (72)
90 cd01129 PulE-GspE PulE/GspE Th 80.9 0.86 1.9E-05 45.3 1.7 29 70-98 71-99 (264)
91 COG1201 Lhr Lhr-like helicases 80.2 2.2 4.8E-05 48.9 4.8 53 71-140 31-83 (814)
92 PF12846 AAA_10: AAA-like doma 79.3 0.76 1.7E-05 45.3 0.7 20 79-98 1-20 (304)
93 PF01637 Arch_ATPase: Archaeal 79.2 1 2.2E-05 42.4 1.6 29 69-97 10-38 (234)
94 PF01935 DUF87: Domain of unkn 79.2 0.76 1.6E-05 44.2 0.7 16 82-97 26-41 (229)
95 PTZ00112 origin recognition co 78.8 1.5 3.3E-05 50.5 2.9 22 76-97 778-799 (1164)
96 COG1222 RPT1 ATP-dependent 26S 78.6 1.9 4.1E-05 44.6 3.3 91 4-94 95-200 (406)
97 PF05970 PIF1: PIF1-like helic 78.5 1.6 3.4E-05 45.5 2.8 37 56-96 3-39 (364)
98 PF01695 IstB_IS21: IstB-like 78.2 1.6 3.4E-05 40.8 2.4 18 81-98 49-66 (178)
99 TIGR02782 TrbB_P P-type conjug 78.0 1.1 2.4E-05 45.4 1.5 29 68-97 122-150 (299)
100 PF00004 AAA: ATPase family as 77.8 0.96 2.1E-05 38.7 0.8 15 82-96 1-15 (132)
101 KOG0804 Cytoplasmic Zn-finger 77.6 26 0.00057 37.2 11.2 69 408-476 381-452 (493)
102 PF01486 K-box: K-box region; 77.3 22 0.00047 29.8 9.0 76 361-440 17-99 (100)
103 PF13207 AAA_17: AAA domain; P 77.1 1 2.2E-05 38.4 0.8 16 81-96 1-16 (121)
104 PRK13894 conjugal transfer ATP 77.0 1.3 2.8E-05 45.4 1.6 28 69-97 139-166 (319)
105 PF13086 AAA_11: AAA domain; P 76.8 1.4 3E-05 41.5 1.7 27 71-98 10-36 (236)
106 PF06309 Torsin: Torsin; Inte 76.7 1.4 3E-05 39.0 1.5 15 81-95 54-69 (127)
107 PF13479 AAA_24: AAA domain 76.3 1.2 2.7E-05 42.6 1.2 20 79-98 3-22 (213)
108 KOG0727 26S proteasome regulat 76.0 4 8.6E-05 40.4 4.5 124 5-128 100-249 (408)
109 TIGR03015 pepcterm_ATPase puta 75.9 1.7 3.7E-05 42.5 2.2 24 73-96 37-60 (269)
110 PF00448 SRP54: SRP54-type pro 75.8 1 2.3E-05 42.7 0.5 18 81-98 3-20 (196)
111 PF13191 AAA_16: AAA ATPase do 74.9 1 2.2E-05 41.1 0.2 22 75-96 20-41 (185)
112 PF04977 DivIC: Septum formati 74.6 11 0.00023 29.8 6.1 36 410-445 18-54 (80)
113 cd01130 VirB11-like_ATPase Typ 74.5 2 4.3E-05 40.1 2.1 28 69-97 16-43 (186)
114 PRK12402 replication factor C 74.0 2.5 5.4E-05 42.9 2.8 43 48-98 13-55 (337)
115 KOG0239 Kinesin (KAR3 subfamil 73.8 4 8.7E-05 46.0 4.5 87 45-153 26-112 (670)
116 COG4962 CpaF Flp pilus assembl 73.4 2 4.4E-05 44.2 1.9 28 69-97 164-191 (355)
117 PHA00729 NTP-binding motif con 73.3 3 6.4E-05 40.6 3.0 32 67-98 5-36 (226)
118 PRK13833 conjugal transfer pro 73.1 1.7 3.8E-05 44.6 1.4 28 69-97 135-162 (323)
119 PF13671 AAA_33: AAA domain; P 72.7 1.7 3.6E-05 38.1 1.0 16 81-96 1-16 (143)
120 COG3074 Uncharacterized protei 72.3 33 0.00071 27.0 7.8 17 415-431 24-40 (79)
121 PF00580 UvrD-helicase: UvrD/R 72.0 1.6 3.4E-05 43.4 0.8 21 78-98 12-32 (315)
122 PF02562 PhoH: PhoH-like prote 71.8 2.8 6E-05 40.2 2.4 21 78-98 18-38 (205)
123 PF06005 DUF904: Protein of un 71.5 26 0.00056 27.8 7.4 40 410-449 12-51 (72)
124 PRK00888 ftsB cell division pr 71.5 12 0.00026 31.9 6.0 36 410-445 28-63 (105)
125 PHA02544 44 clamp loader, smal 70.9 2.9 6.2E-05 42.2 2.4 23 76-98 39-62 (316)
126 PRK13900 type IV secretion sys 70.8 2.7 5.8E-05 43.3 2.2 29 69-98 151-179 (332)
127 PRK06547 hypothetical protein; 70.7 3.8 8.3E-05 38.0 3.0 28 69-96 5-32 (172)
128 smart00487 DEXDc DEAD-like hel 70.7 2.8 6.1E-05 37.8 2.1 18 81-98 26-43 (201)
129 PF08317 Spc7: Spc7 kinetochor 70.5 64 0.0014 33.1 12.2 7 293-299 105-111 (325)
130 PRK13851 type IV secretion sys 69.6 1.9 4.1E-05 44.7 0.7 29 69-98 153-181 (344)
131 PLN00020 ribulose bisphosphate 69.5 4.1 8.8E-05 42.7 3.1 51 45-95 110-164 (413)
132 KOG0994 Extracellular matrix g 69.3 32 0.00069 40.7 10.1 22 319-340 1176-1197(1758)
133 PF00910 RNA_helicase: RNA hel 69.0 1.6 3.5E-05 36.9 0.1 15 82-96 1-15 (107)
134 PF01580 FtsK_SpoIIIE: FtsK/Sp 68.5 1.8 4E-05 40.8 0.3 18 81-98 40-57 (205)
135 cd00268 DEADc DEAD-box helicas 67.6 3.7 8E-05 38.3 2.2 23 72-96 31-53 (203)
136 PF07724 AAA_2: AAA domain (Cd 67.4 2.7 5.9E-05 39.0 1.2 17 80-96 4-20 (171)
137 COG1223 Predicted ATPase (AAA+ 67.2 4 8.7E-05 40.6 2.4 49 79-127 151-210 (368)
138 PRK12723 flagellar biosynthesi 67.2 5.2 0.00011 42.2 3.4 20 79-98 174-193 (388)
139 PRK13764 ATPase; Provisional 67.1 2.9 6.2E-05 46.5 1.6 20 79-98 257-276 (602)
140 PRK10536 hypothetical protein; 67.0 3.7 7.9E-05 40.8 2.1 42 46-97 51-92 (262)
141 PF13238 AAA_18: AAA domain; P 66.9 2.4 5.2E-05 36.0 0.8 15 82-96 1-15 (129)
142 PF07728 AAA_5: AAA domain (dy 66.8 2.1 4.5E-05 37.5 0.3 15 82-96 2-16 (139)
143 PF05496 RuvB_N: Holliday junc 66.7 7.7 0.00017 37.8 4.2 42 53-95 23-66 (233)
144 PF04899 MbeD_MobD: MbeD/MobD 66.4 53 0.0011 26.0 8.1 48 409-471 21-68 (70)
145 TIGR03499 FlhF flagellar biosy 66.3 2.5 5.5E-05 42.4 0.9 18 81-98 196-213 (282)
146 KOG0926 DEAH-box RNA helicase 66.3 4.1 8.9E-05 46.2 2.5 19 78-96 270-288 (1172)
147 PF03215 Rad17: Rad17 cell cyc 66.3 3.7 8.1E-05 44.9 2.2 30 67-96 31-62 (519)
148 PF06414 Zeta_toxin: Zeta toxi 65.4 2.9 6.3E-05 39.4 1.0 20 77-96 13-32 (199)
149 TIGR00635 ruvB Holliday juncti 64.5 4.9 0.00011 40.3 2.6 40 57-97 7-48 (305)
150 PTZ00424 helicase 45; Provisio 64.4 4.1 8.9E-05 42.5 2.0 26 70-97 58-83 (401)
151 PF07106 TBPIP: Tat binding pr 64.0 28 0.0006 32.0 7.3 65 409-473 72-137 (169)
152 PRK11776 ATP-dependent RNA hel 64.0 4.3 9.4E-05 43.4 2.2 22 72-95 36-57 (460)
153 TIGR02903 spore_lon_C ATP-depe 63.6 3.7 7.9E-05 46.0 1.6 42 47-96 151-192 (615)
154 PRK14127 cell division protein 63.3 25 0.00055 30.2 6.2 26 418-443 39-64 (109)
155 TIGR02881 spore_V_K stage V sp 63.0 3.6 7.7E-05 40.6 1.2 18 80-97 43-60 (261)
156 PF00063 Myosin_head: Myosin h 63.0 5.2 0.00011 45.3 2.7 36 61-96 67-102 (689)
157 KOG0953 Mitochondrial RNA heli 63.0 8.9 0.00019 41.9 4.2 46 81-126 193-238 (700)
158 KOG0340 ATP-dependent RNA heli 62.6 4.3 9.3E-05 41.9 1.7 47 69-117 36-82 (442)
159 PF02456 Adeno_IVa2: Adenoviru 62.3 3.1 6.7E-05 42.3 0.6 16 82-97 90-105 (369)
160 PF13555 AAA_29: P-loop contai 61.8 3.6 7.7E-05 31.7 0.7 15 82-96 26-40 (62)
161 PF06048 DUF927: Domain of unk 61.8 7 0.00015 39.3 3.1 33 64-97 179-211 (286)
162 TIGR02237 recomb_radB DNA repa 61.8 4.6 0.0001 38.0 1.7 25 72-96 2-29 (209)
163 PLN03025 replication factor C 61.7 5.9 0.00013 40.3 2.6 18 81-98 36-53 (319)
164 PRK14722 flhF flagellar biosyn 61.7 3.5 7.7E-05 43.2 0.9 20 79-98 137-156 (374)
165 COG1419 FlhF Flagellar GTP-bin 61.4 7 0.00015 41.2 3.1 39 59-97 179-221 (407)
166 PRK11192 ATP-dependent RNA hel 61.2 5.1 0.00011 42.5 2.1 24 71-96 32-55 (434)
167 PF07693 KAP_NTPase: KAP famil 60.6 7.1 0.00015 39.3 2.9 20 77-96 18-37 (325)
168 cd01123 Rad51_DMC1_radA Rad51_ 60.2 6.2 0.00013 37.8 2.3 29 68-96 5-36 (235)
169 PRK04837 ATP-dependent RNA hel 60.2 5.3 0.00012 42.2 2.0 24 71-96 39-62 (423)
170 PF05729 NACHT: NACHT domain 60.0 4.2 9.1E-05 36.1 1.0 17 81-97 2-18 (166)
171 COG1219 ClpX ATP-dependent pro 59.9 4.3 9.2E-05 41.5 1.1 16 80-95 98-113 (408)
172 smart00763 AAA_PrkA PrkA AAA d 59.9 10 0.00022 39.5 3.9 43 49-96 49-95 (361)
173 TIGR03158 cas3_cyano CRISPR-as 59.6 6.6 0.00014 40.8 2.5 25 72-96 7-31 (357)
174 PRK13342 recombination factor 59.6 5.2 0.00011 42.4 1.8 22 76-97 33-54 (413)
175 PRK04328 hypothetical protein; 59.5 6.6 0.00014 38.5 2.4 28 68-95 9-39 (249)
176 PF12775 AAA_7: P-loop contain 59.4 5.4 0.00012 39.9 1.8 42 49-96 9-50 (272)
177 PF15254 CCDC14: Coiled-coil d 59.4 88 0.0019 35.6 11.0 82 361-442 392-481 (861)
178 PRK00440 rfc replication facto 59.4 7.3 0.00016 39.0 2.7 21 76-96 35-55 (319)
179 COG1126 GlnQ ABC-type polar am 59.3 4.2 9.2E-05 39.4 0.9 15 82-96 31-45 (240)
180 KOG0709 CREB/ATF family transc 59.0 28 0.00062 37.1 7.0 60 419-479 289-348 (472)
181 cd01120 RecA-like_NTPases RecA 58.9 3.8 8.3E-05 36.0 0.6 17 82-98 2-18 (165)
182 PRK10590 ATP-dependent RNA hel 58.9 6.2 0.00014 42.3 2.3 24 71-96 32-55 (456)
183 PRK10884 SH3 domain-containing 58.4 1E+02 0.0022 29.6 10.1 35 410-444 133-167 (206)
184 TIGR01241 FtsH_fam ATP-depende 58.3 4 8.7E-05 44.3 0.7 81 45-126 50-146 (495)
185 PRK11331 5-methylcytosine-spec 58.0 8 0.00017 41.5 2.8 29 297-329 319-347 (459)
186 PRK10416 signal recognition pa 57.9 8.7 0.00019 39.4 3.0 19 80-98 115-133 (318)
187 PF00735 Septin: Septin; Inte 57.3 3.4 7.4E-05 41.5 -0.0 20 76-95 1-20 (281)
188 PRK13169 DNA replication intia 57.3 37 0.00081 29.2 6.3 36 409-444 22-57 (110)
189 TIGR01618 phage_P_loop phage n 57.3 4.4 9.6E-05 39.3 0.7 20 79-98 12-31 (220)
190 PRK09361 radB DNA repair and r 57.3 8.3 0.00018 36.9 2.6 31 67-97 8-41 (225)
191 PF13173 AAA_14: AAA domain 57.3 4.7 0.0001 35.1 0.8 17 81-97 4-20 (128)
192 TIGR02209 ftsL_broad cell divi 57.2 37 0.0008 27.2 6.1 39 411-449 26-64 (85)
193 KOG0971 Microtubule-associated 57.1 89 0.0019 36.3 10.6 65 407-472 323-388 (1243)
194 PRK06067 flagellar accessory p 57.1 8 0.00017 37.3 2.5 30 67-96 10-42 (234)
195 TIGR02788 VirB11 P-type DNA tr 57.0 8.2 0.00018 39.2 2.7 30 67-97 133-162 (308)
196 COG1125 OpuBA ABC-type proline 56.9 4.5 9.8E-05 40.2 0.7 28 301-336 185-212 (309)
197 KOG0335 ATP-dependent RNA heli 56.7 4.4 9.5E-05 43.5 0.6 24 74-99 108-131 (482)
198 PF07716 bZIP_2: Basic region 56.5 20 0.00043 26.5 4.0 30 415-444 24-53 (54)
199 PF06156 DUF972: Protein of un 56.4 48 0.001 28.4 6.8 35 410-444 23-57 (107)
200 TIGR01359 UMP_CMP_kin_fam UMP- 56.3 5.3 0.00012 36.7 1.1 14 82-95 2-15 (183)
201 cd02021 GntK Gluconate kinase 55.9 4.9 0.00011 35.7 0.7 15 82-96 2-16 (150)
202 smart00242 MYSc Myosin. Large 55.8 10 0.00022 42.9 3.4 37 60-96 73-109 (677)
203 PRK04195 replication factor C 55.7 8.6 0.00019 41.6 2.7 29 68-96 27-56 (482)
204 PRK09270 nucleoside triphospha 55.6 12 0.00027 35.9 3.6 37 60-96 13-50 (229)
205 PF03980 Nnf1: Nnf1 ; InterPr 55.5 1.1E+02 0.0024 25.8 9.1 38 407-444 71-108 (109)
206 KOG2543 Origin recognition com 55.5 4.7 0.0001 42.1 0.6 17 80-96 31-47 (438)
207 TIGR02640 gas_vesic_GvpN gas v 55.4 11 0.00023 37.4 3.1 28 67-96 11-38 (262)
208 PRK15422 septal ring assembly 55.3 93 0.002 25.1 7.7 23 411-433 20-42 (79)
209 PF07926 TPR_MLP1_2: TPR/MLP1/ 55.2 1.3E+02 0.0027 26.5 9.7 61 408-472 58-118 (132)
210 PF10226 DUF2216: Uncharacteri 54.9 1.3E+02 0.0029 28.4 9.9 41 406-446 105-145 (195)
211 TIGR00348 hsdR type I site-spe 54.7 8.7 0.00019 43.4 2.6 31 67-98 247-282 (667)
212 PRK00080 ruvB Holliday junctio 54.4 8.9 0.00019 39.1 2.4 17 81-97 53-69 (328)
213 KOG0651 26S proteasome regulat 54.1 6.3 0.00014 40.2 1.2 53 43-95 125-182 (388)
214 PF10236 DAP3: Mitochondrial r 54.1 9.4 0.0002 38.9 2.5 24 75-98 19-42 (309)
215 PRK00131 aroK shikimate kinase 54.0 6.5 0.00014 35.4 1.2 17 80-96 5-21 (175)
216 PRK14974 cell division protein 54.0 16 0.00034 37.8 4.1 20 79-98 140-159 (336)
217 KOG2264 Exostosin EXT1L [Signa 53.8 58 0.0013 35.7 8.3 36 410-445 108-143 (907)
218 PRK11448 hsdR type I restricti 53.8 7.1 0.00015 46.7 1.8 28 70-98 425-452 (1123)
219 cd01393 recA_like RecA is a b 53.8 9.2 0.0002 36.4 2.3 31 67-97 4-37 (226)
220 PRK07261 topology modulation p 53.6 6.2 0.00013 36.4 1.0 15 82-96 3-17 (171)
221 PRK08118 topology modulation p 53.5 6.3 0.00014 36.2 1.1 14 82-95 4-17 (167)
222 PF05377 FlaC_arch: Flagella a 53.3 26 0.00057 26.3 4.1 32 412-443 3-34 (55)
223 TIGR01243 CDC48 AAA family ATP 53.3 6.6 0.00014 44.9 1.4 51 46-96 174-229 (733)
224 TIGR00614 recQ_fam ATP-depende 53.2 9 0.0002 41.2 2.4 25 70-96 19-43 (470)
225 PF13476 AAA_23: AAA domain; P 53.1 5.9 0.00013 36.4 0.8 18 80-97 20-37 (202)
226 KOG3859 Septins (P-loop GTPase 53.1 7.7 0.00017 38.9 1.6 23 74-96 37-59 (406)
227 PF10224 DUF2205: Predicted co 53.0 50 0.0011 26.8 6.0 34 410-443 24-57 (80)
228 cd01394 radB RadB. The archaea 53.0 11 0.00024 35.8 2.7 29 69-97 6-37 (218)
229 TIGR02902 spore_lonB ATP-depen 52.9 9.3 0.0002 42.0 2.4 43 46-96 61-103 (531)
230 PRK10884 SH3 domain-containing 52.8 73 0.0016 30.6 8.2 33 413-445 122-154 (206)
231 cd01850 CDC_Septin CDC/Septin. 52.7 6.7 0.00015 39.2 1.2 21 76-96 1-21 (276)
232 TIGR00376 DNA helicase, putati 52.6 8.5 0.00018 43.3 2.1 18 81-98 175-192 (637)
233 KOG1514 Origin recognition com 52.4 19 0.00042 40.4 4.7 53 280-338 571-632 (767)
234 cd01383 MYSc_type_VIII Myosin 52.4 14 0.00031 41.8 3.8 35 61-96 74-109 (677)
235 TIGR03819 heli_sec_ATPase heli 52.3 8 0.00017 40.0 1.7 30 67-97 167-196 (340)
236 TIGR02655 circ_KaiC circadian 52.3 18 0.00039 39.2 4.5 27 69-95 8-37 (484)
237 PRK10917 ATP-dependent DNA hel 52.3 12 0.00026 42.5 3.2 40 54-97 261-300 (681)
238 PHA02557 22 prohead core prote 52.3 1.9E+02 0.0041 28.8 11.0 62 409-471 141-202 (271)
239 PHA02244 ATPase-like protein 52.2 14 0.00031 38.7 3.5 20 76-97 118-137 (383)
240 PRK13341 recombination factor 52.2 9.1 0.0002 43.7 2.3 23 76-98 49-71 (725)
241 cd01126 TraG_VirD4 The TraG/Tr 52.2 7.8 0.00017 40.5 1.6 17 82-98 2-18 (384)
242 PRK00771 signal recognition pa 52.1 17 0.00038 38.9 4.3 36 445-480 388-423 (437)
243 cd01384 MYSc_type_XI Myosin mo 52.1 14 0.0003 41.8 3.7 21 76-96 85-105 (674)
244 cd00464 SK Shikimate kinase (S 51.6 6.7 0.00014 34.7 0.9 16 81-96 1-16 (154)
245 TIGR02322 phosphon_PhnN phosph 51.4 6.5 0.00014 36.1 0.8 16 81-96 3-18 (179)
246 cd01428 ADK Adenylate kinase ( 51.4 7.1 0.00015 36.0 1.1 15 82-96 2-16 (194)
247 cd01381 MYSc_type_VII Myosin m 51.2 15 0.00032 41.6 3.8 21 76-96 83-103 (671)
248 COG0606 Predicted ATPase with 51.2 11 0.00023 40.6 2.5 29 76-114 196-224 (490)
249 cd00124 MYSc Myosin motor doma 51.0 14 0.00031 41.8 3.6 35 61-96 68-103 (679)
250 cd01377 MYSc_type_II Myosin mo 51.0 14 0.00031 41.9 3.5 36 60-96 72-108 (693)
251 PRK06696 uridine kinase; Valid 50.8 16 0.00034 35.1 3.4 21 76-96 19-39 (223)
252 smart00489 DEXDc3 DEAD-like he 50.5 11 0.00025 37.8 2.5 38 55-98 9-46 (289)
253 smart00488 DEXDc2 DEAD-like he 50.5 11 0.00025 37.8 2.5 38 55-98 9-46 (289)
254 cd00820 PEPCK_HprK Phosphoenol 50.5 7.3 0.00016 33.4 0.9 16 81-96 17-32 (107)
255 cd01385 MYSc_type_IX Myosin mo 50.4 15 0.00032 41.8 3.6 21 76-96 91-111 (692)
256 cd01387 MYSc_type_XV Myosin mo 50.4 15 0.00032 41.7 3.6 35 61-96 69-104 (677)
257 PRK05703 flhF flagellar biosyn 50.3 6.8 0.00015 41.8 0.9 18 81-98 223-240 (424)
258 COG5019 CDC3 Septin family pro 49.8 8.8 0.00019 39.8 1.5 20 76-95 20-39 (373)
259 cd01382 MYSc_type_VI Myosin mo 49.8 15 0.00032 41.9 3.5 35 61-96 73-108 (717)
260 PF06156 DUF972: Protein of un 49.8 73 0.0016 27.3 6.9 42 408-449 14-55 (107)
261 COG2256 MGS1 ATPase related to 49.8 8.4 0.00018 40.5 1.4 37 58-95 28-64 (436)
262 TIGR01313 therm_gnt_kin carboh 49.8 6.4 0.00014 35.5 0.5 14 82-95 1-14 (163)
263 cd01378 MYSc_type_I Myosin mot 49.8 16 0.00035 41.3 3.8 21 76-96 83-103 (674)
264 PRK10865 protein disaggregatio 49.5 12 0.00026 43.6 2.8 17 80-96 599-615 (857)
265 PRK05580 primosome assembly pr 49.5 9.1 0.0002 43.4 1.7 37 54-97 144-180 (679)
266 PRK11634 ATP-dependent RNA hel 49.2 9.8 0.00021 42.7 1.9 24 71-96 37-60 (629)
267 PF02534 T4SS-DNA_transf: Type 49.2 13 0.00027 39.9 2.7 18 80-97 45-62 (469)
268 PHA02624 large T antigen; Prov 49.2 15 0.00032 41.0 3.1 30 69-98 419-450 (647)
269 COG1136 SalX ABC-type antimicr 49.1 6.8 0.00015 38.1 0.6 15 82-96 34-48 (226)
270 PRK14531 adenylate kinase; Pro 48.9 8.2 0.00018 35.8 1.1 15 81-95 4-18 (183)
271 PF06785 UPF0242: Uncharacteri 48.8 2.2E+02 0.0047 29.4 11.0 69 371-440 103-172 (401)
272 PRK15422 septal ring assembly 48.6 1.3E+02 0.0027 24.4 7.5 26 416-441 18-43 (79)
273 cd01380 MYSc_type_V Myosin mot 48.5 17 0.00036 41.4 3.6 21 76-96 83-103 (691)
274 PHA03155 hypothetical protein; 48.4 46 0.001 28.7 5.3 26 417-442 9-34 (115)
275 PF00485 PRK: Phosphoribulokin 48.1 7.2 0.00016 36.5 0.5 15 82-96 2-16 (194)
276 PRK11889 flhF flagellar biosyn 48.1 17 0.00038 38.5 3.4 18 80-97 242-259 (436)
277 PF00170 bZIP_1: bZIP transcri 48.0 90 0.002 23.7 6.6 32 410-441 27-58 (64)
278 COG0630 VirB11 Type IV secreto 48.0 7.1 0.00015 39.9 0.5 18 81-98 145-162 (312)
279 CHL00081 chlI Mg-protoporyphyr 47.8 13 0.00029 38.6 2.5 45 45-97 12-56 (350)
280 PF08477 Miro: Miro-like prote 47.7 7.6 0.00016 32.6 0.6 15 82-96 2-16 (119)
281 CHL00176 ftsH cell division pr 47.7 9.2 0.0002 43.0 1.4 16 81-96 218-233 (638)
282 PRK14961 DNA polymerase III su 47.6 15 0.00032 38.2 2.9 19 78-96 37-55 (363)
283 PRK06995 flhF flagellar biosyn 47.6 7.9 0.00017 42.0 0.8 19 80-98 257-275 (484)
284 CHL00181 cbbX CbbX; Provisiona 47.5 8.5 0.00018 38.8 1.0 15 82-96 62-76 (287)
285 PF05529 Bap31: B-cell recepto 47.3 1.1E+02 0.0024 28.6 8.5 36 410-445 155-190 (192)
286 PRK06217 hypothetical protein; 47.1 8.8 0.00019 35.5 1.0 14 82-95 4-17 (183)
287 KOG0977 Nuclear envelope prote 47.1 1.9E+02 0.0041 32.0 11.1 28 362-390 52-79 (546)
288 TIGR02880 cbbX_cfxQ probable R 46.9 8 0.00017 38.8 0.7 16 81-96 60-75 (284)
289 PRK04537 ATP-dependent RNA hel 46.9 12 0.00026 41.5 2.1 24 71-96 40-63 (572)
290 PRK08233 hypothetical protein; 46.8 9 0.0002 34.9 1.0 16 81-96 5-20 (182)
291 TIGR02236 recomb_radA DNA repa 46.8 12 0.00026 37.8 2.0 30 68-97 81-113 (310)
292 cd01127 TrwB Bacterial conjuga 46.7 7.9 0.00017 41.0 0.6 19 79-97 42-60 (410)
293 KOG0729 26S proteasome regulat 46.6 10 0.00022 37.9 1.4 37 59-95 185-227 (435)
294 PLN00206 DEAD-box ATP-dependen 46.6 14 0.00031 40.3 2.6 25 70-96 151-175 (518)
295 COG2607 Predicted ATPase (AAA+ 46.2 16 0.00035 36.0 2.6 110 72-212 77-188 (287)
296 KOG1803 DNA helicase [Replicat 45.9 15 0.00033 40.4 2.7 18 80-97 202-219 (649)
297 TIGR01360 aden_kin_iso1 adenyl 45.8 9.9 0.00022 34.8 1.1 16 81-96 5-20 (188)
298 PHA02653 RNA helicase NPH-II; 45.7 16 0.00034 41.5 2.8 32 58-95 164-195 (675)
299 TIGR00643 recG ATP-dependent D 45.7 17 0.00036 40.8 3.1 40 54-97 235-274 (630)
300 KOG0354 DEAD-box like helicase 45.5 14 0.00031 41.8 2.4 44 50-96 44-93 (746)
301 TIGR03881 KaiC_arch_4 KaiC dom 45.5 16 0.00035 34.9 2.5 29 69-97 7-38 (229)
302 TIGR03263 guanyl_kin guanylate 45.5 9.3 0.0002 34.9 0.8 16 81-96 3-18 (180)
303 COG3598 RepA RecA-family ATPas 45.4 5.4 0.00012 40.9 -0.8 85 49-150 60-146 (402)
304 PRK14532 adenylate kinase; Pro 45.3 10 0.00022 35.1 1.1 15 81-95 2-16 (188)
305 cd02023 UMPK Uridine monophosp 45.2 8.5 0.00018 36.0 0.6 15 82-96 2-16 (198)
306 PRK12724 flagellar biosynthesi 45.1 20 0.00044 38.2 3.4 18 80-97 224-241 (432)
307 KOG0739 AAA+-type ATPase [Post 45.0 10 0.00022 38.5 1.1 81 48-128 131-226 (439)
308 PRK01297 ATP-dependent RNA hel 44.9 13 0.00027 40.1 1.9 26 69-96 116-141 (475)
309 PF10923 DUF2791: P-loop Domai 44.8 18 0.0004 38.4 3.0 27 70-96 40-66 (416)
310 cd02020 CMPK Cytidine monophos 44.7 11 0.00023 33.0 1.1 15 82-96 2-16 (147)
311 KOG2228 Origin recognition com 44.7 19 0.00042 37.2 3.0 40 54-97 28-67 (408)
312 cd01124 KaiC KaiC is a circadi 44.7 10 0.00022 34.7 1.0 15 82-96 2-16 (187)
313 TIGR03238 dnd_assoc_3 dnd syst 44.7 12 0.00027 40.4 1.7 18 81-98 34-51 (504)
314 COG0467 RAD55 RecA-superfamily 44.6 15 0.00032 36.1 2.2 25 71-95 12-39 (260)
315 TIGR03877 thermo_KaiC_1 KaiC d 44.6 17 0.00037 35.2 2.6 27 69-95 8-37 (237)
316 KOG0995 Centromere-associated 44.4 2.3E+02 0.0051 31.2 11.1 21 456-476 343-363 (581)
317 TIGR02746 TraC-F-type type-IV 44.4 8.8 0.00019 44.2 0.6 19 79-97 430-448 (797)
318 KOG4797 Transcriptional regula 44.3 1.1E+02 0.0025 26.1 7.0 30 413-442 64-93 (123)
319 PF10234 Cluap1: Clusterin-ass 44.2 2.2E+02 0.0049 28.4 10.3 52 413-472 187-238 (267)
320 TIGR03689 pup_AAA proteasome A 44.1 9.5 0.00021 41.7 0.8 14 82-95 219-232 (512)
321 COG4026 Uncharacterized protei 44.0 66 0.0014 31.2 6.2 25 417-441 136-160 (290)
322 PF04111 APG6: Autophagy prote 43.9 98 0.0021 31.7 8.0 19 455-473 116-134 (314)
323 CHL00195 ycf46 Ycf46; Provisio 43.9 10 0.00022 41.3 0.9 17 80-96 260-276 (489)
324 KOG0735 AAA+-type ATPase [Post 43.9 25 0.00054 39.8 3.9 20 77-96 699-718 (952)
325 PRK06762 hypothetical protein; 43.8 12 0.00025 33.9 1.2 15 81-95 4-18 (166)
326 PRK00300 gmk guanylate kinase; 43.4 12 0.00025 35.1 1.2 17 80-96 6-22 (205)
327 TIGR00064 ftsY signal recognit 43.2 12 0.00026 37.4 1.2 19 80-98 73-91 (272)
328 PHA03162 hypothetical protein; 43.2 40 0.00086 29.8 4.3 27 416-442 13-39 (135)
329 PRK12726 flagellar biosynthesi 43.2 10 0.00023 39.9 0.9 19 80-98 207-225 (407)
330 PF01166 TSC22: TSC-22/dip/bun 43.2 61 0.0013 24.6 4.7 29 411-439 16-44 (59)
331 PRK09039 hypothetical protein; 43.2 2.3E+02 0.005 29.3 10.8 28 416-443 130-157 (343)
332 PRK10078 ribose 1,5-bisphospho 43.1 10 0.00022 35.2 0.8 16 81-96 4-19 (186)
333 TIGR03744 traC_PFL_4706 conjug 43.1 9.4 0.0002 44.7 0.6 20 78-97 474-493 (893)
334 KOG2373 Predicted mitochondria 43.0 18 0.0004 37.4 2.5 29 69-98 261-292 (514)
335 PRK04040 adenylate kinase; Pro 42.8 11 0.00024 35.4 0.9 16 81-96 4-19 (188)
336 PHA01747 putative ATP-dependen 42.8 12 0.00026 39.1 1.2 31 67-97 178-208 (425)
337 PRK14721 flhF flagellar biosyn 42.6 11 0.00024 40.2 0.9 19 79-97 191-209 (420)
338 cd01379 MYSc_type_III Myosin m 42.5 22 0.00048 40.1 3.3 21 76-96 83-103 (653)
339 TIGR01817 nifA Nif-specific re 42.4 17 0.00038 39.8 2.5 43 47-95 193-235 (534)
340 PF00931 NB-ARC: NB-ARC domain 42.3 24 0.00051 34.7 3.3 30 67-96 5-36 (287)
341 cd00071 GMPK Guanosine monopho 42.3 10 0.00022 33.6 0.6 15 82-96 2-16 (137)
342 PF04548 AIG1: AIG1 family; I 42.1 13 0.00027 35.5 1.2 16 81-96 2-17 (212)
343 COG3829 RocR Transcriptional r 42.1 18 0.00039 39.5 2.4 42 45-92 240-281 (560)
344 TIGR00231 small_GTP small GTP- 42.0 10 0.00022 32.4 0.6 16 81-96 3-18 (161)
345 PRK15429 formate hydrogenlyase 42.0 17 0.00038 41.1 2.5 44 47-96 373-416 (686)
346 cd01386 MYSc_type_XVIII Myosin 41.9 23 0.00051 40.7 3.5 21 76-96 83-103 (767)
347 PF12774 AAA_6: Hydrolytic ATP 41.8 15 0.00032 35.9 1.6 15 83-97 36-50 (231)
348 PF11932 DUF3450: Protein of u 41.8 95 0.0021 30.4 7.4 22 457-478 103-124 (251)
349 PRK03839 putative kinase; Prov 41.8 12 0.00026 34.4 1.0 14 82-95 3-16 (180)
350 KOG1547 Septin CDC10 and relat 41.7 28 0.00061 34.3 3.5 20 76-95 43-62 (336)
351 TIGR02173 cyt_kin_arch cytidyl 41.4 12 0.00027 33.6 1.0 16 81-96 2-17 (171)
352 KOG0736 Peroxisome assembly fa 41.4 24 0.00052 40.2 3.3 21 107-127 785-805 (953)
353 cd01853 Toc34_like Toc34-like 41.4 20 0.00044 35.3 2.6 40 54-96 9-48 (249)
354 PF13851 GAS: Growth-arrest sp 41.3 3.2E+02 0.007 26.0 11.9 37 411-447 88-124 (201)
355 PRK14729 miaA tRNA delta(2)-is 41.2 14 0.0003 37.6 1.3 15 81-95 6-20 (300)
356 PRK06851 hypothetical protein; 41.2 15 0.00032 38.5 1.6 28 70-97 21-48 (367)
357 smart00787 Spc7 Spc7 kinetocho 41.2 4.1E+02 0.0089 27.2 12.2 34 411-444 227-260 (312)
358 PRK14527 adenylate kinase; Pro 41.2 14 0.0003 34.5 1.3 17 80-96 7-23 (191)
359 PF00038 Filament: Intermediat 41.1 3.8E+02 0.0083 26.8 12.4 33 411-443 77-109 (312)
360 COG3842 PotA ABC-type spermidi 41.0 11 0.00024 39.2 0.6 13 84-96 36-48 (352)
361 PRK13531 regulatory ATPase Rav 41.0 20 0.00044 38.9 2.6 28 67-96 29-56 (498)
362 PRK01172 ski2-like helicase; P 41.0 18 0.00039 40.9 2.4 29 57-95 25-53 (674)
363 TIGR01243 CDC48 AAA family ATP 40.9 15 0.00031 42.1 1.7 16 81-96 489-504 (733)
364 TIGR01351 adk adenylate kinase 40.9 13 0.00028 35.3 1.1 34 82-121 2-35 (210)
365 PRK10867 signal recognition pa 40.9 30 0.00064 37.1 3.9 35 445-479 392-426 (433)
366 cd01983 Fer4_NifH The Fer4_Nif 40.9 13 0.00027 29.4 0.9 17 82-98 2-18 (99)
367 KOG0652 26S proteasome regulat 40.8 13 0.00029 37.0 1.1 14 81-94 207-220 (424)
368 KOG0726 26S proteasome regulat 40.8 23 0.0005 36.0 2.8 48 81-128 221-279 (440)
369 PF05812 Herpes_BLRF2: Herpesv 40.8 50 0.0011 28.8 4.5 28 416-443 3-30 (118)
370 PRK14723 flhF flagellar biosyn 40.8 13 0.00027 42.7 1.1 19 80-98 186-204 (767)
371 PRK14530 adenylate kinase; Pro 40.6 13 0.00028 35.4 1.0 16 81-96 5-20 (215)
372 PRK13169 DNA replication intia 40.1 1.3E+02 0.0028 26.0 6.9 41 408-448 14-54 (110)
373 cd00983 recA RecA is a bacter 40.1 22 0.00048 36.6 2.7 31 66-96 38-72 (325)
374 PF14532 Sigma54_activ_2: Sigm 40.1 14 0.0003 32.5 1.1 21 76-96 18-38 (138)
375 PF10412 TrwB_AAD_bind: Type I 40.0 10 0.00022 39.9 0.2 18 81-98 17-34 (386)
376 TIGR03752 conj_TIGR03752 integ 39.9 79 0.0017 34.1 6.7 14 457-470 128-141 (472)
377 cd02027 APSK Adenosine 5'-phos 39.8 13 0.00028 33.4 0.8 15 82-96 2-16 (149)
378 KOG1029 Endocytic adaptor prot 39.5 2.5E+02 0.0054 32.3 10.5 37 408-444 485-521 (1118)
379 PRK11034 clpA ATP-dependent Cl 39.5 27 0.00058 40.2 3.5 18 79-96 488-505 (758)
380 PF02183 HALZ: Homeobox associ 39.3 1.2E+02 0.0025 21.8 5.5 31 413-443 9-39 (45)
381 PRK04301 radA DNA repair and r 39.1 24 0.00052 35.9 2.8 30 68-97 88-120 (317)
382 PRK13767 ATP-dependent helicas 39.1 18 0.00039 42.3 2.1 22 73-96 43-64 (876)
383 PRK11057 ATP-dependent DNA hel 39.1 21 0.00045 39.9 2.5 23 71-95 34-56 (607)
384 TIGR01613 primase_Cterm phage/ 39.0 13 0.00029 37.5 0.9 19 78-96 75-93 (304)
385 COG3839 MalK ABC-type sugar tr 39.0 12 0.00027 38.6 0.6 15 82-96 32-46 (338)
386 TIGR00235 udk uridine kinase. 39.0 13 0.00028 35.1 0.8 16 81-96 8-23 (207)
387 TIGR03880 KaiC_arch_3 KaiC dom 39.0 22 0.00047 34.0 2.3 28 70-97 4-34 (224)
388 smart00338 BRLZ basic region l 39.0 51 0.0011 25.1 4.0 31 415-445 25-55 (65)
389 PF02367 UPF0079: Uncharacteri 38.9 29 0.00063 30.5 2.9 19 80-98 16-34 (123)
390 cd02019 NK Nucleoside/nucleoti 38.8 14 0.00031 28.4 0.9 15 82-96 2-16 (69)
391 PRK10246 exonuclease subunit S 38.7 32 0.0007 41.1 4.1 17 80-96 31-47 (1047)
392 TIGR03495 phage_LysB phage lys 38.7 1.1E+02 0.0023 27.4 6.4 21 456-476 79-99 (135)
393 PF12329 TMF_DNA_bd: TATA elem 38.7 1.7E+02 0.0037 23.2 7.0 25 417-441 34-58 (74)
394 PRK04296 thymidine kinase; Pro 38.6 10 0.00023 35.5 0.0 18 81-98 4-21 (190)
395 PF04156 IncA: IncA protein; 38.5 3.2E+02 0.007 25.2 10.2 9 457-465 177-185 (191)
396 PF00170 bZIP_1: bZIP transcri 38.4 68 0.0015 24.4 4.6 29 416-444 26-54 (64)
397 TIGR00602 rad24 checkpoint pro 38.3 19 0.00042 40.4 2.1 18 81-98 112-129 (637)
398 COG0563 Adk Adenylate kinase a 38.3 16 0.00034 34.2 1.1 14 82-95 3-16 (178)
399 COG0464 SpoVK ATPases of the A 38.1 18 0.00039 39.1 1.8 50 47-96 239-293 (494)
400 PRK00279 adk adenylate kinase; 38.0 15 0.00033 34.9 1.1 14 82-95 3-16 (215)
401 KOG0982 Centrosomal protein Nu 38.0 2.1E+02 0.0046 30.4 9.3 27 416-442 297-323 (502)
402 TIGR01425 SRP54_euk signal rec 37.9 31 0.00067 36.9 3.4 28 445-472 400-427 (429)
403 PF00025 Arf: ADP-ribosylation 37.9 20 0.00043 32.9 1.8 27 70-96 4-31 (175)
404 PRK14970 DNA polymerase III su 37.8 28 0.0006 36.0 3.0 21 76-96 35-56 (367)
405 cd03240 ABC_Rad50 The catalyti 37.6 14 0.00031 35.0 0.8 17 81-97 24-40 (204)
406 TIGR02767 TraG-Ti Ti-type conj 37.5 17 0.00036 40.8 1.4 18 80-97 212-229 (623)
407 cd02025 PanK Pantothenate kina 37.4 13 0.00028 35.9 0.4 13 84-96 4-16 (220)
408 PRK15483 type III restriction- 37.4 45 0.00097 39.3 4.8 14 85-98 65-78 (986)
409 TIGR01389 recQ ATP-dependent D 37.4 19 0.00041 40.0 1.8 25 70-96 21-45 (591)
410 cd03274 ABC_SMC4_euk Eukaryoti 37.3 15 0.00032 35.1 0.9 15 82-96 28-42 (212)
411 TIGR02397 dnaX_nterm DNA polym 37.3 29 0.00062 35.4 3.0 19 78-96 35-53 (355)
412 PRK09354 recA recombinase A; P 37.2 22 0.00048 36.9 2.2 32 66-97 43-78 (349)
413 TIGR00382 clpX endopeptidase C 37.2 15 0.00033 39.0 1.0 17 80-96 117-133 (413)
414 TIGR00763 lon ATP-dependent pr 37.2 20 0.00043 41.3 2.0 16 81-96 349-364 (775)
415 PF01926 MMR_HSR1: 50S ribosom 37.1 13 0.00027 31.4 0.3 15 82-96 2-16 (116)
416 PRK11664 ATP-dependent RNA hel 37.1 23 0.0005 41.0 2.5 29 67-97 10-38 (812)
417 PRK14962 DNA polymerase III su 37.0 25 0.00055 38.0 2.7 17 80-96 37-53 (472)
418 TIGR01650 PD_CobS cobaltochela 36.9 16 0.00035 37.6 1.1 18 79-96 64-81 (327)
419 KOG0745 Putative ATP-dependent 36.8 17 0.00037 38.8 1.3 16 81-96 228-243 (564)
420 PTZ00014 myosin-A; Provisional 36.8 33 0.00071 39.8 3.6 21 76-96 180-200 (821)
421 PRK13729 conjugal transfer pil 36.8 79 0.0017 34.1 6.2 29 414-442 95-123 (475)
422 PRK05342 clpX ATP-dependent pr 36.8 17 0.00036 38.7 1.2 17 80-96 109-125 (412)
423 PF06745 KaiC: KaiC; InterPro 36.8 17 0.00037 34.7 1.2 27 69-95 6-35 (226)
424 KOG1533 Predicted GTPase [Gene 36.7 39 0.00085 33.3 3.6 28 82-126 5-32 (290)
425 PRK05480 uridine/cytidine kina 36.6 17 0.00037 34.2 1.2 17 80-96 7-23 (209)
426 KOG0738 AAA+-type ATPase [Post 36.6 19 0.00042 37.9 1.6 33 62-94 224-260 (491)
427 PF01745 IPT: Isopentenyl tran 36.5 16 0.00035 35.4 0.9 15 82-96 4-18 (233)
428 PF04728 LPP: Lipoprotein leuc 36.5 1E+02 0.0022 23.3 5.0 37 410-446 4-40 (56)
429 TIGR02768 TraA_Ti Ti-type conj 36.5 20 0.00044 41.1 1.9 28 70-98 360-387 (744)
430 PRK10820 DNA-binding transcrip 36.2 23 0.0005 38.8 2.2 46 45-96 199-244 (520)
431 COG1122 CbiO ABC-type cobalt t 36.1 15 0.00033 35.9 0.8 16 81-96 32-47 (235)
432 PTZ00110 helicase; Provisional 36.1 20 0.00044 39.5 1.8 24 71-96 161-184 (545)
433 TIGR00929 VirB4_CagE type IV s 36.0 15 0.00032 42.1 0.7 19 79-97 434-452 (785)
434 cd03279 ABC_sbcCD SbcCD and ot 36.0 16 0.00035 34.7 0.9 19 80-98 29-47 (213)
435 PLN02200 adenylate kinase fami 35.9 17 0.00037 35.4 1.1 16 80-95 44-59 (234)
436 cd00227 CPT Chloramphenicol (C 35.7 17 0.00037 33.3 1.0 16 81-96 4-19 (175)
437 KOG4657 Uncharacterized conser 35.7 2.2E+02 0.0047 27.7 8.3 35 408-442 92-126 (246)
438 TIGR01074 rep ATP-dependent DN 35.6 16 0.00035 41.1 1.0 19 80-98 15-33 (664)
439 PF08317 Spc7: Spc7 kinetochor 35.6 3.4E+02 0.0073 27.7 10.6 11 459-469 276-286 (325)
440 TIGR02639 ClpA ATP-dependent C 35.6 32 0.00069 39.4 3.3 36 59-95 459-500 (731)
441 PRK11637 AmiB activator; Provi 35.6 2.8E+02 0.0061 29.4 10.4 87 359-452 43-132 (428)
442 TIGR03345 VI_ClpV1 type VI sec 35.6 35 0.00077 39.8 3.7 17 80-96 597-613 (852)
443 PF00158 Sigma54_activat: Sigm 35.5 20 0.00043 33.0 1.4 96 76-194 19-124 (168)
444 TIGR03007 pepcterm_ChnLen poly 35.4 5.9E+02 0.013 27.3 13.1 117 300-440 119-235 (498)
445 PRK10689 transcription-repair 35.4 29 0.00062 41.9 3.0 38 54-95 600-637 (1147)
446 TIGR02238 recomb_DMC1 meiotic 35.4 33 0.00071 35.0 3.1 30 67-96 81-113 (313)
447 PRK02496 adk adenylate kinase; 35.4 18 0.00039 33.3 1.1 15 82-96 4-18 (184)
448 PRK06305 DNA polymerase III su 35.3 22 0.00048 38.2 1.9 41 48-96 15-56 (451)
449 TIGR03817 DECH_helic helicase/ 35.2 23 0.00049 40.7 2.1 24 71-96 45-68 (742)
450 PHA02530 pseT polynucleotide k 35.2 18 0.00039 36.0 1.2 15 81-95 4-18 (300)
451 KOG0971 Microtubule-associated 35.2 2.9E+02 0.0063 32.4 10.3 33 408-440 524-556 (1243)
452 PRK14528 adenylate kinase; Pro 35.1 18 0.0004 33.7 1.1 16 81-96 3-18 (186)
453 PF09439 SRPRB: Signal recogni 35.0 20 0.00043 33.7 1.3 17 80-96 4-20 (181)
454 PRK01184 hypothetical protein; 34.9 19 0.00042 33.1 1.2 15 81-95 3-17 (184)
455 PF03193 DUF258: Protein of un 34.9 22 0.00048 32.7 1.6 26 69-96 27-52 (161)
456 TIGR02329 propionate_PrpR prop 34.8 25 0.00054 38.6 2.2 45 46-96 208-252 (526)
457 TIGR00959 ffh signal recogniti 34.7 20 0.00044 38.2 1.5 20 79-98 99-118 (428)
458 cd03272 ABC_SMC3_euk Eukaryoti 34.7 18 0.00038 34.9 1.0 16 82-97 26-41 (243)
459 PRK13889 conjugal transfer rel 34.7 22 0.00049 41.9 1.9 28 69-97 353-380 (988)
460 TIGR00580 mfd transcription-re 34.5 29 0.00062 40.9 2.7 26 72-97 465-490 (926)
461 TIGR02688 conserved hypothetic 34.4 17 0.00036 38.9 0.7 45 76-125 208-252 (449)
462 PRK11823 DNA repair protein Ra 34.3 22 0.00048 38.1 1.7 31 67-97 65-98 (446)
463 PRK09825 idnK D-gluconate kina 34.3 17 0.00037 33.6 0.8 16 81-96 5-20 (176)
464 PRK13873 conjugal transfer ATP 34.3 15 0.00033 42.5 0.4 16 81-96 443-458 (811)
465 PRK11545 gntK gluconate kinase 34.3 12 0.00026 34.2 -0.3 13 85-97 1-13 (163)
466 PRK15424 propionate catabolism 34.3 27 0.00059 38.4 2.4 44 46-95 215-258 (538)
467 cd03115 SRP The signal recogni 34.2 18 0.00039 32.9 0.8 17 82-98 3-19 (173)
468 COG4839 FtsL Protein required 34.2 84 0.0018 27.4 4.8 44 413-456 64-107 (120)
469 TIGR03574 selen_PSTK L-seryl-t 34.1 18 0.00039 35.2 0.9 15 82-96 2-16 (249)
470 TIGR01447 recD exodeoxyribonuc 34.1 22 0.00049 39.5 1.7 26 71-98 154-179 (586)
471 PRK14951 DNA polymerase III su 34.1 27 0.00058 39.2 2.3 40 48-96 14-55 (618)
472 COG4096 HsdR Type I site-speci 33.9 36 0.00078 39.1 3.2 37 61-98 167-204 (875)
473 KOG0742 AAA+-type ATPase [Post 33.9 20 0.00044 38.0 1.2 14 81-94 386-399 (630)
474 PRK14738 gmk guanylate kinase; 33.8 20 0.00044 34.0 1.2 19 78-96 12-30 (206)
475 cd02028 UMPK_like Uridine mono 33.8 19 0.00041 33.4 1.0 15 82-96 2-16 (179)
476 PF07106 TBPIP: Tat binding pr 33.8 74 0.0016 29.2 4.9 26 419-444 112-137 (169)
477 COG1579 Zn-ribbon protein, pos 33.7 4.7E+02 0.01 25.7 11.7 30 413-442 107-136 (239)
478 COG0324 MiaA tRNA delta(2)-iso 33.7 22 0.00047 36.3 1.4 16 81-96 5-20 (308)
479 TIGR03117 cas_csf4 CRISPR-asso 33.7 29 0.00062 39.1 2.5 33 59-97 2-34 (636)
480 KOG0741 AAA+-type ATPase [Post 33.7 22 0.00047 39.0 1.4 19 77-95 252-272 (744)
481 PRK12727 flagellar biosynthesi 33.5 18 0.0004 39.7 0.9 19 80-98 351-369 (559)
482 PLN02796 D-glycerate 3-kinase 33.3 13 0.00029 38.5 -0.2 15 82-96 103-117 (347)
483 PRK09302 circadian clock prote 33.2 29 0.00062 37.8 2.4 29 68-96 17-48 (509)
484 PLN03187 meiotic recombination 33.1 27 0.00059 36.2 2.0 31 66-96 110-143 (344)
485 cd01121 Sms Sms (bacterial rad 33.0 25 0.00053 36.9 1.7 31 68-98 68-101 (372)
486 PRK13822 conjugal transfer cou 33.0 22 0.00048 40.0 1.5 18 79-96 224-241 (641)
487 PRK05057 aroK shikimate kinase 33.0 19 0.00041 33.1 0.8 17 80-96 5-21 (172)
488 TIGR03752 conj_TIGR03752 integ 33.0 2.9E+02 0.0062 30.0 9.6 29 413-441 113-141 (472)
489 TIGR00390 hslU ATP-dependent p 32.9 19 0.00041 38.4 0.9 17 80-96 48-64 (441)
490 PRK13721 conjugal transfer ATP 32.9 17 0.00038 42.2 0.7 19 79-97 449-467 (844)
491 KOG2655 Septin family protein 32.6 21 0.00046 37.1 1.2 20 76-95 18-37 (366)
492 PF15290 Syntaphilin: Golgi-lo 32.6 3.3E+02 0.0072 27.4 9.2 28 414-441 115-142 (305)
493 PRK13850 type IV secretion sys 32.6 23 0.0005 40.1 1.5 21 77-97 137-157 (670)
494 PRK05541 adenylylsulfate kinas 32.6 22 0.00048 32.5 1.2 16 81-96 9-24 (176)
495 PRK00091 miaA tRNA delta(2)-is 32.6 23 0.00049 36.2 1.3 15 81-95 6-20 (307)
496 PRK13853 type IV secretion sys 32.5 17 0.00038 41.9 0.6 17 81-97 428-444 (789)
497 TIGR00554 panK_bact pantothena 32.4 38 0.00082 34.3 2.9 17 80-96 63-79 (290)
498 PRK06851 hypothetical protein; 32.3 26 0.00057 36.6 1.8 28 69-96 204-231 (367)
499 KOG1853 LIS1-interacting prote 32.3 2.1E+02 0.0046 28.3 7.7 74 395-472 31-104 (333)
500 PRK13897 type IV secretion sys 32.2 27 0.00057 39.1 1.9 23 82-118 161-183 (606)
No 1
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=4.6e-95 Score=779.44 Aligned_cols=338 Identities=35% Similarity=0.591 Sum_probs=310.1
Q ss_pred CCCeEEEEEeCCCCccccccCCCceEEEecCCceEEEeCCC--CcceeEeecEEecCC-------CchHHHHHHHHHHHH
Q 047385 1 MSNITVCARFRPLSSKERSNHGDSVCIHGIDNESFIFKDDK--EENFKFGFDRVFYEK-------SEQAEVFEFLALPII 71 (483)
Q Consensus 1 m~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~F~FD~Vf~~~-------~~Q~~vf~~~~~plv 71 (483)
+++|.|+|||||++.+|... ...|+..+.+++..+..|+ .....|+||+.|+.. ++|..||+.++.|++
T Consensus 3 ~ssv~VAVRVRPfn~rE~s~--~~k~Vvqm~gn~ttii~~~~~k~~~~FtfD~SYWS~d~edPhfAsQ~qVYedlg~~mL 80 (1221)
T KOG0245|consen 3 GSSVKVAVRVRPFNAREKSR--DAKCVVQMQGNTTTIINPKGSKDAPKFTFDYSYWSHDSEDPHFASQKQVYEDLGREML 80 (1221)
T ss_pred CCceEEEEEeccchhhhhhc--ccceEEEecCCceeeecCCCcccCCceecceeeecCCCCCCchhhHHHHHHHHhHHHH
Confidence 57899999999999999874 5678888877776665544 345679999999754 789999999999999
Q ss_pred HHhhcCcceEEEeeCCCCCCccceecCCCCCCccccccCchhhhHHHHHHhhhcC-CCCcEEEEEEeEEEEecceeeccc
Q 047385 72 RDAFNGMNGTVITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTVDELFDCMKSS-DASVKFTIKLSMVEIYMEKVRDLF 150 (483)
Q Consensus 72 ~~~l~G~n~ti~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~i~~~-~~~~~~~v~vS~~EIyne~v~DLL 150 (483)
+.+|+|||+||||||||||||||||+|.. .++++|||||+|++||.++... ..+..|.|.|||+|||||+|+|||
T Consensus 81 ~~AfEGYN~ClFAYGQTGSGKSYTMMG~~----~~~e~GIIPrlCEeLF~ri~~nq~~~~sy~VevSymEIYcErVrDLL 156 (1221)
T KOG0245|consen 81 DHAFEGYNVCLFAYGQTGSGKSYTMMGFQ----EPDEPGIIPRLCEELFSRIADNQSQQMSYSVEVSYMEIYCERVRDLL 156 (1221)
T ss_pred HHHhcccceEEEEeccCCCCcceeeeccC----CCCCCCchhHHHHHHHHHHhhcccccceEEEEEeehhHHHHHHHHHh
Confidence 99999999999999999999999999965 4578999999999999999765 456899999999999999999999
Q ss_pred C-CC-CCcceeeeccCCceEecCcEEEEecCHHHHHHHHHhhhhccCcccccCCCCCCCceEEEEEEEEEeecc----cc
Q 047385 151 D-LS-RDNIQIKESRVQGILLSGVTEIYVFNSAEALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQELTK----EK 224 (483)
Q Consensus 151 ~-~~-~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~----~~ 224 (483)
+ |. +.+|++||+|..|+||.+|+.+.|+|+.|+..+|..|++.|++++|.||+.|||||+||+|.+.|+... ..
T Consensus 157 ~~p~~kg~LRVREHP~lGPYVedLS~~aV~Sy~dI~~~md~GNkqRTtAATnMNdtSSRSHaVFtIvftQk~~~~~~~l~ 236 (1221)
T KOG0245|consen 157 NAPKSKGGLRVREHPILGPYVEDLSKLAVTSYADIQDLMDEGNKQRTTAATNMNDTSSRSHAVFTIVFTQKKHDQDTGLD 236 (1221)
T ss_pred hCCCCCCCceeeccCccChhHhHhhhcccccHHHHHHHHHhcchhhhhhhhccccccccceeEEEEEEEeeeccccCCCc
Confidence 8 54 458999999999999999999999999999999999999999999999999999999999999998652 33
Q ss_pred eeEeeeeeeeeCCCCccccccCCchhhHHHHHHhhhhHHHHHHHHHHhccCCC---CCCCCccCCCcccchhhhhccCCC
Q 047385 225 RVKAGKLLLVDLAGSEKAEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSP---GKAFHIPYRDSKLTRILQDALGGN 301 (483)
Q Consensus 225 ~~~~skL~~VDLAGsEr~~~t~~~g~~~~E~~~IN~SL~aL~~vI~aL~~~~~---~~~~~iPyRdSkLT~lLqdsLgGn 301 (483)
..+.|||+|||||||||++.+|+.|+|++||.+|||||++||+||+||++.++ ++..+||||||.|||||++.||||
T Consensus 237 sek~SKIsLVDLAGSERasstGa~G~RLKEGa~INKSLtTLGkVISALAe~~~~k~~ks~fIPYRDSVLTWLLkEnLGGN 316 (1221)
T KOG0245|consen 237 SEKVSKISLVDLAGSERASSTGANGDRLKEGANINKSLTTLGKVISALAESQKGKKKKSDFIPYRDSVLTWLLKENLGGN 316 (1221)
T ss_pred ceeeeeeeEEeccCcccccccCCCccchhcccccchHHHHHHHHHHHHHHHhccCCCCCccccchHHHHHHHHHHhcCCc
Confidence 67899999999999999999999999999999999999999999999998654 456699999999999999999999
Q ss_pred cceeeeEeeCCCCCCHHHHHHHHHHHHHhcccccCCccccccc
Q 047385 302 SRTALLCCCSPSTSNSAESLSTLRFGTRAKHIKASPHAHCSKE 344 (483)
Q Consensus 302 s~t~mI~~isp~~~~~~ETlsTL~fa~rak~I~~~~~~n~~~~ 344 (483)
|||+|||++||++.||+|||+|||||+|||.|+|+++||+++.
T Consensus 317 SKTaMIAAlSPAdiNyeETLSTLRYAdRAK~Iv~~avVNEdpn 359 (1221)
T KOG0245|consen 317 SKTAMIAALSPADINYEETLSTLRYADRAKQIVNNAVVNEDPN 359 (1221)
T ss_pred chhhhhhccChhhcChHHHHHHHHHhhHhhhhhccceeCCCcc
Confidence 9999999999999999999999999999999999999999985
No 2
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.9e-93 Score=780.42 Aligned_cols=335 Identities=38% Similarity=0.607 Sum_probs=298.6
Q ss_pred CCeEEEEEeCCCCccccccCCCceEEEecCCce-EEEeCC---CCcceeEeecEEecCCCchHHHHHHHHHHHHHHhhcC
Q 047385 2 SNITVCARFRPLSSKERSNHGDSVCIHGIDNES-FIFKDD---KEENFKFGFDRVFYEKSEQAEVFEFLALPIIRDAFNG 77 (483)
Q Consensus 2 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~F~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G 77 (483)
.||+|+|||||++.+|.... .+..+.+.+... |.+... +.-.+.|+||+||+|.+.|.+||+.++.|+|+.|+.|
T Consensus 49 ~NIqVivRcRp~n~~E~~~~-s~~VVs~~~~~kEV~v~~~~~sk~~~k~ftFDkVFGpes~Q~d~Y~~~v~p~i~eVl~G 127 (1041)
T KOG0243|consen 49 VNIQVIVRCRPRNDRERKSK-SSVVVSCDGIRKEVAVRQTIASKQIDKTFTFDKVFGPESQQEDLYDQAVSPIIKEVLEG 127 (1041)
T ss_pred CceEEEEEeCCCCchhhhcC-CCeEEecCCCcceEEEecccccccccceeecceeeCcchhHHHHHHHHHHHHHHHHhcc
Confidence 48999999999999998643 344555545233 555543 1246889999999999999999999999999999999
Q ss_pred cceEEEeeCCCCCCccceecCCCCC--CccccccCchhhhHHHHHHhhhcCCCCcEEEEEEeEEEEecceeecccCCCCC
Q 047385 78 MNGTVITYGQTGAGKTFSMEGPSIL--ACDEQKKGLLQRTVDELFDCMKSSDASVKFTIKLSMVEIYMEKVRDLFDLSRD 155 (483)
Q Consensus 78 ~n~ti~ayG~tgSGKT~Tm~G~~~~--~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyne~v~DLL~~~~~ 155 (483)
||||||||||||+||||||.|.... +..++.+|||||++.+||+.+...+ .+|+|+|||+|+|||.++|||++...
T Consensus 128 yNCTIFAYGQTGTGKTyTMeG~~~~~~g~l~~~aGIIPRal~~IFd~Le~~~--~EYsvKVSfLELYNEEl~DLLa~~~~ 205 (1041)
T KOG0243|consen 128 YNCTIFAYGQTGTGKTYTMEGGERKKNGELPSEAGIIPRALRQIFDTLEAQG--AEYSVKVSFLELYNEELTDLLASEDT 205 (1041)
T ss_pred CCceEEEecCCCCCceeeeecCcccccCCCCccCCcchHHHHHHHHHHHhcC--CeEEEEEEehhhhhHHHHHhcCCccc
Confidence 9999999999999999999994322 2345789999999999999999874 79999999999999999999987654
Q ss_pred ---cceeeec-----cCCceEecCcEEEEecCHHHHHHHHHhhhhccCcccccCCCCCCCceEEEEEEEEEeec---ccc
Q 047385 156 ---NIQIKES-----RVQGILLSGVTEIYVFNSAEALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQELT---KEK 224 (483)
Q Consensus 156 ---~l~i~e~-----~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~---~~~ 224 (483)
.+.+.++ .++|++|.||.++.|.++.|++++|.+|..+|++++|.||..|||||+||+|+|..+.. +++
T Consensus 206 ~~~~~~~k~~~~~~~~kggV~vkGlEEi~V~~A~ei~klLekGs~kRrtAaTl~N~~SSRSHsIFsItvhike~t~~gee 285 (1041)
T KOG0243|consen 206 SDKKLRIKDDSTIVDGKGGVIVKGLEEIIVTNADEIYKLLEKGSKKRRTAATLMNDQSSRSHSIFSITVHIKENTPEGEE 285 (1041)
T ss_pred cccccccccCCcccCCcCcEEEecceeeeecchhHHHHHHHhhhhHhHHHHHHhhhhccccceEEEEEEEEecCCCcchh
Confidence 3444444 47899999999999999999999999999999999999999999999999999977644 345
Q ss_pred eeEeeeeeeeeCCCCccccccCCchhhHHHHHHhhhhHHHHHHHHHHhccCCCCCCCCccCCCcccchhhhhccCCCcce
Q 047385 225 RVKAGKLLLVDLAGSEKAEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSPGKAFHIPYRDSKLTRILQDALGGNSRT 304 (483)
Q Consensus 225 ~~~~skL~~VDLAGsEr~~~t~~~g~~~~E~~~IN~SL~aL~~vI~aL~~~~~~~~~~iPyRdSkLT~lLqdsLgGns~t 304 (483)
-++.|||+||||||||...++|+.+.|.+|++.||+||++||+||+||.+ +..|||||+|||||||||||||.++|
T Consensus 286 lvK~GKLNLVDLAGSENI~RSGA~~~RArEAG~INqSLLTLGRVInALVe----~s~HIPYRESKLTRLLQDSLGGkTKT 361 (1041)
T KOG0243|consen 286 LVKIGKLNLVDLAGSENISRSGARNGRAREAGEINQSLLTLGRVINALVE----HSGHIPYRESKLTRLLQDSLGGKTKT 361 (1041)
T ss_pred hHhhcccceeeccccccccccccccchhHHhhhhhHHHHHHHHHHHHHHc----cCCCCCchHHHHHHHHHHHhCCCcee
Confidence 57889999999999999999999999999999999999999999999998 56799999999999999999999999
Q ss_pred eeeEeeCCCCCCHHHHHHHHHHHHHhcccccCCcccccc
Q 047385 305 ALLCCCSPSTSNSAESLSTLRFGTRAKHIKASPHAHCSK 343 (483)
Q Consensus 305 ~mI~~isp~~~~~~ETlsTL~fa~rak~I~~~~~~n~~~ 343 (483)
+|||||||+..+++|||+||.||.|||+|+|+|.+|+..
T Consensus 362 ~iIATiSPa~~~lEETlSTLEYA~RAKnIkNKPevNQkl 400 (1041)
T KOG0243|consen 362 CIIATISPAKHNLEETLSTLEYAHRAKNIKNKPEVNQKL 400 (1041)
T ss_pred EEEEEeCCCcccHHHHHHHHHHHHHhhhccCCCccchHH
Confidence 999999999999999999999999999999999999754
No 3
>KOG4280 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=7.5e-94 Score=754.72 Aligned_cols=333 Identities=43% Similarity=0.651 Sum_probs=303.5
Q ss_pred CeEEEEEeCCCCccccccCCCceEEEecCC-ceEEEeCCC----CcceeEeecEEecCCCchHHHHHHHHHHHHHHhhcC
Q 047385 3 NITVCARFRPLSSKERSNHGDSVCIHGIDN-ESFIFKDDK----EENFKFGFDRVFYEKSEQAEVFEFLALPIIRDAFNG 77 (483)
Q Consensus 3 ~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~-~~~~~~~~~----~~~~~F~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G 77 (483)
+|+|+||+||++..+...... .|+..... ..+.+.++. +..+.|+||+||+++++|++||+.++.|+|++|++|
T Consensus 6 ~v~vvvr~rPl~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~ftfD~vf~~~stQ~dvy~~~~~~lV~svl~G 84 (574)
T KOG4280|consen 6 KVKVVVRVRPLSAAERSELLK-SILSVDPAHGRVSLKNPVAGIEGKPKSFTFDAVFDSDSTQDDVYQETVAPLVESVLEG 84 (574)
T ss_pred ceeEEEeecCCCchhhhhhhc-cccccccccceeeecCCcccccCCCCCceeeeeecCCCCHHHHHHHHhHHHHHHHhcc
Confidence 689999999999988765433 34433333 334444432 346789999999999999999999999999999999
Q ss_pred cceEEEeeCCCCCCccceecCCCCCCccccccCchhhhHHHHHHhhhcCCCCcEEEEEEeEEEEecceeecccCCCC-Cc
Q 047385 78 MNGTVITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTVDELFDCMKSSDASVKFTIKLSMVEIYMEKVRDLFDLSR-DN 156 (483)
Q Consensus 78 ~n~ti~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyne~v~DLL~~~~-~~ 156 (483)
||+||||||||||||||||.|+ +++..|||||++.+||..|+.......|.|+|||+|||||.|+|||++.. +.
T Consensus 85 yNgtvFaYGQTGsGKTyTM~G~-----~~~~~GiiPraf~~LF~~I~~~~~~~~f~vrvS~lEiYnE~i~DLL~~~~~~~ 159 (574)
T KOG4280|consen 85 YNGTVFAYGQTGSGKTYTMIGP-----DPELRGLIPRAFEHLFRHIDERKEKTRFLVRVSYLEIYNESIRDLLSPVNPKG 159 (574)
T ss_pred cCceEEEeccCCCCCceEeeCC-----ChhhCCchhHHHHHHHHHHHhccccceEEEEeehHHHHhHHHHHHhCccCcCC
Confidence 9999999999999999999998 25789999999999999999886666899999999999999999999987 58
Q ss_pred ceeeeccCCceEecCcEEEEecCHHHHHHHHHhhhhccCcccccCCCCCCCceEEEEEEEEEeec---ccceeEeeeeee
Q 047385 157 IQIKESRVQGILLSGVTEIYVFNSAEALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQELT---KEKRVKAGKLLL 233 (483)
Q Consensus 157 l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~---~~~~~~~skL~~ 233 (483)
+.++++++.|+||.||+++.|.++++++.+|..|..+|++++|.||..|||||+||+|+|++... +......|+|+|
T Consensus 160 l~lre~p~~Gv~V~nlse~~v~s~~d~~~~l~~G~~nR~vgat~mn~~SsRSH~ift~~i~~~~~~~~~~~~~~~~rlnl 239 (574)
T KOG4280|consen 160 LELREDPKCGVYVENLSEMDVESAEDAQQLLVVGLANRRVGATSMNEESSRSHAIFTIHIESSEKSDGGLMSGRSSKLNL 239 (574)
T ss_pred ceeeEcCCCceEecCcceeecCCHHHHHHHHHHHHhhcchhhccCCcccccceEEEEEEEEeecccCCCccccccceeee
Confidence 99999999999999999999999999999999999999999999999999999999999999332 345678899999
Q ss_pred eeCCCCccccccCCchhhHHHHHHhhhhHHHHHHHHHHhccCCCCCCCCccCCCcccchhhhhccCCCcceeeeEeeCCC
Q 047385 234 VDLAGSEKAEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSPGKAFHIPYRDSKLTRILQDALGGNSRTALLCCCSPS 313 (483)
Q Consensus 234 VDLAGsEr~~~t~~~g~~~~E~~~IN~SL~aL~~vI~aL~~~~~~~~~~iPyRdSkLT~lLqdsLgGns~t~mI~~isp~ 313 (483)
||||||||..++++.|++++|+.+||+||++||+||+||+++ +..||||||||||+||||||||||+|+|||||||+
T Consensus 240 vDLagsEr~~~tga~G~rlkEa~~IN~SLs~LG~vI~aLvd~---~~~HIPYRdSkLT~LLqdSLGGN~kT~mianvsp~ 316 (574)
T KOG4280|consen 240 VDLAGSERQSKTGAEGERLKEATNINLSLSALGNVISALVDG---SKTHIPYRDSKLTRLLQDSLGGNSKTTMIANVSPS 316 (574)
T ss_pred eeccchhhhcccCccchhhhhhcccchhHHHHHHHHHHHhcc---ccCCCCcchhHHHHHHHHHcCCCceEEEEEecCch
Confidence 999999999999999999999999999999999999999995 34499999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcccccCCccccccc
Q 047385 314 TSNSAESLSTLRFGTRAKHIKASPHAHCSKE 344 (483)
Q Consensus 314 ~~~~~ETlsTL~fa~rak~I~~~~~~n~~~~ 344 (483)
..+++||++|||||+|||.|+|+|.+|+++.
T Consensus 317 ~~~~~ETlsTLrfA~Rak~I~nk~~ined~~ 347 (574)
T KOG4280|consen 317 SDNYEETLSTLRFAQRAKAIKNKPVINEDPK 347 (574)
T ss_pred hhhhHHHHHHHHHHHHHHHhhccccccCCcc
Confidence 9999999999999999999999999999987
No 4
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=100.00 E-value=3.8e-90 Score=709.28 Aligned_cols=337 Identities=50% Similarity=0.762 Sum_probs=315.1
Q ss_pred CCCeEEEEEeCCCCccccccCCC-ceEEEecCCceEEEeCCCCcceeEeecEEecCCCchHHHHHHHHHHHHHHhhcCcc
Q 047385 1 MSNITVCARFRPLSSKERSNHGD-SVCIHGIDNESFIFKDDKEENFKFGFDRVFYEKSEQAEVFEFLALPIIRDAFNGMN 79 (483)
Q Consensus 1 m~~i~V~vRvRP~~~~E~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n 79 (483)
|++|+|+||+||++..|...+.. ..|.... .+++.+...+.. +.|.||+||+|+++|++||+.++.|+|++|+.|||
T Consensus 6 ~~~IkV~cR~rP~n~~E~~~~~~~i~~~~~~-~~~v~~~~~~~~-~~y~FDrVF~pnatQe~Vy~~~a~~Iv~dVL~GYN 83 (607)
T KOG0240|consen 6 ECSIKVVCRFRPLNGLENNLGSKFIDCFENG-ENTVVLETTKET-KTYVFDRVFSPNATQEDVYEFAAKPIVDDVLLGYN 83 (607)
T ss_pred CCceEEEEEeecCCchhhhcCCcCccCCCCC-cceEEEeccccc-ccceeeeecCCCccHHHHHHHHHHHHHHHHhcccc
Confidence 78999999999999999876544 3455433 556666654444 99999999999999999999999999999999999
Q ss_pred eEEEeeCCCCCCccceecCCCCCCccccccCchhhhHHHHHHhhhcCCCCcEEEEEEeEEEEecceeecccCCCCCccee
Q 047385 80 GTVITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTVDELFDCMKSSDASVKFTIKLSMVEIYMEKVRDLFDLSRDNIQI 159 (483)
Q Consensus 80 ~ti~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyne~v~DLL~~~~~~l~i 159 (483)
+||||||||||||||||.|... ++...|||||++++||+.|...+.+.+|.|+|||+|||+|+++|||+|.+.++.+
T Consensus 84 GTvfaYGqT~sGKTytm~G~~~---d~~~~GIipRi~~diF~~Iys~~~n~efhVkVsy~EIYmEKi~DLL~~~k~nlsv 160 (607)
T KOG0240|consen 84 GTVFAYGQTGSGKTYTMEGIGH---DPEEMGIIPRILNDIFDHIYSMEENLEFHVKVSYFEIYMEKIRDLLDPEKTNLSV 160 (607)
T ss_pred eeEEEecCCCCCcceeecccCC---ChhhcCcHHHHHHHHHHHHhcCcccceEEEEEEeehhhhhHHHHHhCcccCCcee
Confidence 9999999999999999999764 4467799999999999999999888999999999999999999999999999999
Q ss_pred eeccCCceEecCcEEEEecCHHHHHHHHHhhhhccCcccccCCCCCCCceEEEEEEEEEeecccceeEeeeeeeeeCCCC
Q 047385 160 KESRVQGILLSGVTEIYVFNSAEALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQELTKEKRVKAGKLLLVDLAGS 239 (483)
Q Consensus 160 ~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~skL~~VDLAGs 239 (483)
++|...+++|.|+++..|.++++++..++.|..+|+++.|.||..|||||+||+|+|.|.+......+.|+|.|||||||
T Consensus 161 heDK~~v~~vkG~t~~~v~s~d~v~~~i~~g~~nr~va~t~mn~~sSRSHsIF~i~VkQ~n~e~~~~~~gkLyLVDLaGS 240 (607)
T KOG0240|consen 161 HEDKNRVPYVKGVTERFVSSPDEVLDVIDEGKSNRHVAVTNMNEHSSRSHSIFLIHVKQENVEDKRKLSGKLYLVDLAGS 240 (607)
T ss_pred ecccCCCceecCceeEEecCHHHHHHHHhcccccchhhhccccccccccceEEEEEEEeccccchhhccccEEEEEcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCchhhHHHHHHhhhhHHHHHHHHHHhccCCCCCCCCccCCCcccchhhhhccCCCcceeeeEeeCCCCCCHHH
Q 047385 240 EKAEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSPGKAFHIPYRDSKLTRILQDALGGNSRTALLCCCSPSTSNSAE 319 (483)
Q Consensus 240 Er~~~t~~~g~~~~E~~~IN~SL~aL~~vI~aL~~~~~~~~~~iPyRdSkLT~lLqdsLgGns~t~mI~~isp~~~~~~E 319 (483)
|+.+++|+.|..+.|+++||+||+|||+||+||+++ ...|||||||||||+|||+|||||||.+|+|+||+.-+..|
T Consensus 241 EkvsKtga~g~vleEaK~INkSLsaLgnvI~aLa~g---~~shipYRDSKLTRILqdSLGGNsRTtlIi~csPss~n~~E 317 (607)
T KOG0240|consen 241 EKVSKTGAEGAVLEEAKNINKSLSALGNVINALAEG---PKSHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSLNEAE 317 (607)
T ss_pred cccCCCCccchhHHHHhhhhhhHHHHHHHHHHHhcC---CCCCCcchhhHHHHHHHHHhCCCcceEEEEecCCccccccc
Confidence 999999999999999999999999999999999984 57899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccccCCcccccccc
Q 047385 320 SLSTLRFGTRAKHIKASPHAHCSKES 345 (483)
Q Consensus 320 TlsTL~fa~rak~I~~~~~~n~~~~~ 345 (483)
|.+||+|+.|||.|+|.+.+|...+.
T Consensus 318 T~STl~fg~rak~ikN~v~~n~e~~~ 343 (607)
T KOG0240|consen 318 TKSTLRFGNRAKTIKNTVWVNLELTA 343 (607)
T ss_pred cccchhhccccccccchhhhhhHhhH
Confidence 99999999999999999999976543
No 5
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=100.00 E-value=1.6e-86 Score=679.49 Aligned_cols=329 Identities=40% Similarity=0.654 Sum_probs=298.5
Q ss_pred CCeEEEEEeCCCCccccccCCCceEEEecCCceEEEeCCCCcceeEeecEEecCCCchHHHHHHHHHHHHHHhhcCcceE
Q 047385 2 SNITVCARFRPLSSKERSNHGDSVCIHGIDNESFIFKDDKEENFKFGFDRVFYEKSEQAEVFEFLALPIIRDAFNGMNGT 81 (483)
Q Consensus 2 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~t 81 (483)
.+|+|+|||||++..|.. .+...|+...+++++.+.... .+.|.||+||+++++|++||+.++.|+|+++++|||+|
T Consensus 1 ~~i~V~vRvRP~~~~e~~-~~~~~~v~~~~~~~~~~~~~~--~~~f~FD~vf~~~~~q~~vy~~~~~p~v~~~~~G~n~t 77 (337)
T cd01373 1 PAVKVVVRIRPPNEIEAD-GGQGQCLKKLSSDTLVWHSHP--PRMFTFDHVADSNTNQEDVFQSVGKPLVEDCLSGYNGS 77 (337)
T ss_pred CCeEEEEEcCcCChhhcc-cCCCeEEEEcCCCcEEeeCCC--CcEEeCCeEeCCCCCHHHHHHHHHHHHHHHHhCCCcee
Confidence 379999999999999875 345678887777776665432 67999999999999999999999999999999999999
Q ss_pred EEeeCCCCCCccceecCCCCCC--ccccccCchhhhHHHHHHhhhcC----CCCcEEEEEEeEEEEecceeecccCCCCC
Q 047385 82 VITYGQTGAGKTFSMEGPSILA--CDEQKKGLLQRTVDELFDCMKSS----DASVKFTIKLSMVEIYMEKVRDLFDLSRD 155 (483)
Q Consensus 82 i~ayG~tgSGKT~Tm~G~~~~~--~~~~~~Giipr~~~~LF~~i~~~----~~~~~~~v~vS~~EIyne~v~DLL~~~~~ 155 (483)
|||||||||||||||+|+.... ....++|||||++++||+.+... .....|.|++||+|||||+|+|||++...
T Consensus 78 i~aYGqTGSGKTyTm~G~~~~~~~~~~~~~Giipr~~~~Lf~~i~~~~~~~~~~~~~~v~~S~~EIyne~v~DLL~~~~~ 157 (337)
T cd01373 78 IFAYGQTGSGKTYTMMGPSSSDDESPHGLQGVIPRIFEYLFSLIQREEEKRGDGLKFLCKCSFLEIYNEQITDLLDPTSR 157 (337)
T ss_pred EEEeCCCCCCceEEecCCCCccccccccCCCHHHHHHHHHHHHHHhhhhhcccCceEEEEEEEEeecCCEeeeCCCCCCC
Confidence 9999999999999999976432 12357899999999999988653 24568999999999999999999999888
Q ss_pred cceeeeccCCceEecCcEEEEecCHHHHHHHHHhhhhccCcccccCCCCCCCceEEEEEEEEEeecccc--eeEeeeeee
Q 047385 156 NIQIKESRVQGILLSGVTEIYVFNSAEALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQELTKEK--RVKAGKLLL 233 (483)
Q Consensus 156 ~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~--~~~~skL~~ 233 (483)
.+.+++++.++++|.|++++.|.|++|++++|..|..+|++++|.+|..|||||+||+|+|.+...... ....|+|+|
T Consensus 158 ~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~~~~~~s~l~~ 237 (337)
T cd01373 158 NLKIREDIKKGVYVENLTEEYVSSYEDVYQVLLKGLSNRKVAATSMNSESSRSHAVFTCTIESWEKKASSTNIRTSRLNL 237 (337)
T ss_pred CceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhccCcccCcCCCCCCCccEEEEEEEEEeecCCCCCcEEEEEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999988654332 456799999
Q ss_pred eeCCCCccccccCCchhhHHHHHHhhhhHHHHHHHHHHhccCCCCCCCCccCCCcccchhhhhccCCCcceeeeEeeCCC
Q 047385 234 VDLAGSEKAEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSPGKAFHIPYRDSKLTRILQDALGGNSRTALLCCCSPS 313 (483)
Q Consensus 234 VDLAGsEr~~~t~~~g~~~~E~~~IN~SL~aL~~vI~aL~~~~~~~~~~iPyRdSkLT~lLqdsLgGns~t~mI~~isp~ 313 (483)
||||||||..++++.|.+++|+.+||+||++|++||.+|++...++..||||||||||+||||+||||++|+|||||||+
T Consensus 238 VDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~aL~~~~~~~~~~ipyR~SkLT~lL~dsLggns~t~~I~~vsP~ 317 (337)
T cd01373 238 VDLAGSERQKDDGAEGVRLKEAKNINKSLSTLGHVIMALVDVAHGKQRHVPYRDSKLTFLLRDSLGGNAKTTIIANVSPS 317 (337)
T ss_pred EECCCCCcccccCCccHhhhhhccccHHHHHHHHHHHHHHhhccCCCCccCCcccHHHHHHHHhcCCCceEEEEEEECCC
Confidence 99999999999999999999999999999999999999987554567899999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhccc
Q 047385 314 TSNSAESLSTLRFGTRAKHI 333 (483)
Q Consensus 314 ~~~~~ETlsTL~fa~rak~I 333 (483)
..+++||++||+||+|||+|
T Consensus 318 ~~~~~eTl~TL~fa~rak~I 337 (337)
T cd01373 318 SKCFGETLSTLKFAQRAKLI 337 (337)
T ss_pred cccHHHHHHHHHHHHHhhcC
Confidence 99999999999999999987
No 6
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=100.00 E-value=2e-86 Score=679.07 Aligned_cols=323 Identities=42% Similarity=0.675 Sum_probs=300.5
Q ss_pred CeEEEEEeCCCCccccccCCCceEEEecCCceEEEeCCCC------------cceeEeecEEecCCCchHHHHHHHHHHH
Q 047385 3 NITVCARFRPLSSKERSNHGDSVCIHGIDNESFIFKDDKE------------ENFKFGFDRVFYEKSEQAEVFEFLALPI 70 (483)
Q Consensus 3 ~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~F~FD~Vf~~~~~Q~~vf~~~~~pl 70 (483)
+|+|+|||||++++|... +...|+...+++.+++.++.. ..+.|+||+||+++++|++||+.+++|+
T Consensus 1 ~i~V~vRvRP~~~~E~~~-~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vf~~~~~pl 79 (338)
T cd01370 1 SLTVAVRVRPFNEKEKQE-GTRRVVKVVDDRMLVFDPKDEEDAFRNLRARRNKELKYSFDRVFDETSTQEEVYENTTKPL 79 (338)
T ss_pred CeEEEEEcCCCChhhhhc-CCceEEEEcCCCEEEEcCCcccccccchhcccCCceEEEeccccCCCCCHHHHHHHHHHHH
Confidence 699999999999999664 456788888887777765432 3578999999999999999999999999
Q ss_pred HHHhhcCcceEEEeeCCCCCCccceecCCCCCCccccccCchhhhHHHHHHhhhcCCCCcEEEEEEeEEEEecceeeccc
Q 047385 71 IRDAFNGMNGTVITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTVDELFDCMKSSDASVKFTIKLSMVEIYMEKVRDLF 150 (483)
Q Consensus 71 v~~~l~G~n~ti~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyne~v~DLL 150 (483)
|+++++|||+||||||||||||||||+|++ .++|||||++++||+.++.......|.|++||+|||||+|+|||
T Consensus 80 v~~~~~G~n~~i~ayGqtGSGKTyTm~G~~------~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyne~v~DLL 153 (338)
T cd01370 80 VDGVLNGYNATVFAYGATGAGKTHTMLGTD------SDPGLMVLTMKDLFDKIEERKDDKEFEVSLSYLEIYNETIRDLL 153 (338)
T ss_pred HHHHHCCCCceEEeeCCCCCCCeEEEcCCC------CCCchHHHHHHHHHHhhhhcccCceEEEEEEEEEEECCEEEECC
Confidence 999999999999999999999999999964 56899999999999999988767899999999999999999999
Q ss_pred CCCCCcceeeeccCCceEecCcEEEEecCHHHHHHHHHhhhhccCcccccCCCCCCCceEEEEEEEEEeecc---cceeE
Q 047385 151 DLSRDNIQIKESRVQGILLSGVTEIYVFNSAEALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQELTK---EKRVK 227 (483)
Q Consensus 151 ~~~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~---~~~~~ 227 (483)
++....+.+++++.++++|.|++++.|.|++|++++|+.|.++|++++|.+|..|||||+||+|++.+.... .....
T Consensus 154 ~~~~~~l~i~ed~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~i~~~~~~~~~~~~~~ 233 (338)
T cd01370 154 SPSSGPLELREDPNQGIVVAGLTEHQPKSAEEILELLMKGNRNRTQEPTEANATSSRSHAVLQITVRQKDRTASINQQVR 233 (338)
T ss_pred CCCCCCceEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccccccCccCcceEEEEEEEEEEecCCCCCCcEE
Confidence 998889999999999999999999999999999999999999999999999999999999999999998765 56678
Q ss_pred eeeeeeeeCCCCccccccCCchhhHHHHHHhhhhHHHHHHHHHHhccCCCCCCCCccCCCcccchhhhhccCCCcceeee
Q 047385 228 AGKLLLVDLAGSEKAEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSPGKAFHIPYRDSKLTRILQDALGGNSRTALL 307 (483)
Q Consensus 228 ~skL~~VDLAGsEr~~~t~~~g~~~~E~~~IN~SL~aL~~vI~aL~~~~~~~~~~iPyRdSkLT~lLqdsLgGns~t~mI 307 (483)
.|+|+|||||||||..++++.|.+++|+..||+||++|++||.+|+.... +..||||||||||+||+|+||||++|+||
T Consensus 234 ~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~~L~~~~~-~~~~ipyR~SkLT~lL~d~Lggn~~t~~I 312 (338)
T cd01370 234 IGKLSLIDLAGSERASATNNRGQRLKEGANINRSLLALGNCINALVDGKK-KNKHIPYRDSKLTRLLKDSLGGNCKTVMI 312 (338)
T ss_pred EEEEEEEECCCCccccccCCCCccccccchhhHHHHHHHHHHHHHHhccC-CCCcCCCcCCHHHHHHHHhcCCCCeEEEE
Confidence 89999999999999999999999999999999999999999999997532 35899999999999999999999999999
Q ss_pred EeeCCCCCCHHHHHHHHHHHHHhccc
Q 047385 308 CCCSPSTSNSAESLSTLRFGTRAKHI 333 (483)
Q Consensus 308 ~~isp~~~~~~ETlsTL~fa~rak~I 333 (483)
+||||+..+++||++||+||+|||+|
T Consensus 313 ~~vsp~~~~~~eTl~TL~fa~ra~~I 338 (338)
T cd01370 313 ANISPSSSHYEETHNTLKYANRAKNI 338 (338)
T ss_pred EEeCCchhhHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999986
No 7
>PLN03188 kinesin-12 family protein; Provisional
Probab=100.00 E-value=4.3e-86 Score=728.83 Aligned_cols=334 Identities=39% Similarity=0.642 Sum_probs=300.6
Q ss_pred CCeEEEEEeCCCCccccccCCCceEEEecCCceEEEeCCCCcceeEeecEEecCCCchHHHHHHHHHHHHHHhhcCcceE
Q 047385 2 SNITVCARFRPLSSKERSNHGDSVCIHGIDNESFIFKDDKEENFKFGFDRVFYEKSEQAEVFEFLALPIIRDAFNGMNGT 81 (483)
Q Consensus 2 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~t 81 (483)
++|+|+|||||++..|. + ..++..++++.+.+. ...|.||+||+++++|++||+.++.|+|+.+++|||+|
T Consensus 98 s~VkV~VRVRPl~~~E~---g-~~iV~~~s~dsl~I~-----~qtFtFD~VFdp~aTQedVFe~vv~PLV~svLdGyNaT 168 (1320)
T PLN03188 98 SGVKVIVRMKPLNKGEE---G-EMIVQKMSNDSLTIN-----GQTFTFDSIADPESTQEDIFQLVGAPLVENCLAGFNSS 168 (1320)
T ss_pred CCeEEEEEcCCCCCccC---C-CeeEEEcCCCeEEEe-----CcEEeCCeeeCCCCCHHHHHHHHHHHHHHHHhcCCcce
Confidence 58999999999998863 2 345556677777664 36899999999999999999999999999999999999
Q ss_pred EEeeCCCCCCccceecCCCCCC----ccccccCchhhhHHHHHHhhhcC-----CCCcEEEEEEeEEEEecceeecccCC
Q 047385 82 VITYGQTGAGKTFSMEGPSILA----CDEQKKGLLQRTVDELFDCMKSS-----DASVKFTIKLSMVEIYMEKVRDLFDL 152 (483)
Q Consensus 82 i~ayG~tgSGKT~Tm~G~~~~~----~~~~~~Giipr~~~~LF~~i~~~-----~~~~~~~v~vS~~EIyne~v~DLL~~ 152 (483)
|||||||||||||||+|+.... ....++|||||++++||+.+... +....|.|+|||+|||||.|+|||++
T Consensus 169 IFAYGQTGSGKTYTM~G~~~~~~de~~s~~e~GIIPRaledLF~~I~e~q~k~~d~~~~y~V~vSyLEIYNEkI~DLLsp 248 (1320)
T PLN03188 169 VFAYGQTGSGKTYTMWGPANGLLEEHLSGDQQGLTPRVFERLFARINEEQIKHADRQLKYQCRCSFLEIYNEQITDLLDP 248 (1320)
T ss_pred eecCCCCCCCCCEeeCCCCCcccccccccccCCchHHHHHHHHHHHHhhhhhccccccceEEEEEEEeeecCcceecccc
Confidence 9999999999999999975321 12467899999999999998642 23568999999999999999999999
Q ss_pred CCCcceeeeccCCceEecCcEEEEecCHHHHHHHHHhhhhccCcccccCCCCCCCceEEEEEEEEEeec----ccceeEe
Q 047385 153 SRDNIQIKESRVQGILLSGVTEIYVFNSAEALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQELT----KEKRVKA 228 (483)
Q Consensus 153 ~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~----~~~~~~~ 228 (483)
....+.|++++.+|++|.||+++.|.|.+|++++|..|..+|++++|.+|..|||||+||+|+|.+... +......
T Consensus 249 ~~k~L~IRED~kgGv~VeGLTEv~V~S~ED~l~LL~~G~~nR~tasT~mN~~SSRSHaIFtI~Ves~~k~~~dg~ss~r~ 328 (1320)
T PLN03188 249 SQKNLQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSVADGLSSFKT 328 (1320)
T ss_pred ccCCceEEEcCCCCeEeCCCeEEeCCCHHHHHHHHHHHhccceeccCCCCCccCCCceeEEEEEEEeecccCCCCcceEE
Confidence 888999999999999999999999999999999999999999999999999999999999999987543 2234568
Q ss_pred eeeeeeeCCCCccccccCCchhhHHHHHHhhhhHHHHHHHHHHhccCC-CCCCCCccCCCcccchhhhhccCCCcceeee
Q 047385 229 GKLLLVDLAGSEKAEKTGAEGKVLEEAKTINKSLSALGNVISALTCGS-PGKAFHIPYRDSKLTRILQDALGGNSRTALL 307 (483)
Q Consensus 229 skL~~VDLAGsEr~~~t~~~g~~~~E~~~IN~SL~aL~~vI~aL~~~~-~~~~~~iPyRdSkLT~lLqdsLgGns~t~mI 307 (483)
|+|+|||||||||...+++.|.+++|+++||+||++||+||.+|+..+ .++..||||||||||+||||+|||||+|+||
T Consensus 329 SkLnLVDLAGSER~kkTga~G~RLkEA~~INKSLsaLGnVI~ALae~Sq~gk~~HIPYRDSKLTrLLQDSLGGNSKTvMI 408 (1320)
T PLN03188 329 SRINLVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLGNLINILAEISQTGKQRHIPYRDSRLTFLLQESLGGNAKLAMV 408 (1320)
T ss_pred EEEEEEECCCchhccccCcccHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCCCcCCCCcchHHHHHHHhcCCCceEEEE
Confidence 999999999999999999999999999999999999999999998643 2456799999999999999999999999999
Q ss_pred EeeCCCCCCHHHHHHHHHHHHHhcccccCCccccccc
Q 047385 308 CCCSPSTSNSAESLSTLRFGTRAKHIKASPHAHCSKE 344 (483)
Q Consensus 308 ~~isp~~~~~~ETlsTL~fa~rak~I~~~~~~n~~~~ 344 (483)
|||||+..+++||++||+||+|||+|+|+|++|....
T Consensus 409 a~VSPs~~~~eETLSTLrFAsRAK~IKNkpvvNe~~~ 445 (1320)
T PLN03188 409 CAISPSQSCKSETFSTLRFAQRAKAIKNKAVVNEVMQ 445 (1320)
T ss_pred EecCCchhhHHHHHHHHHHHHHHhhcCccceeccchh
Confidence 9999999999999999999999999999999997653
No 8
>KOG0242 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=3.1e-85 Score=713.59 Aligned_cols=334 Identities=40% Similarity=0.635 Sum_probs=299.3
Q ss_pred CCeEEEEEeCCCCccccccCCCceEEEecCCceEEEeC-CC----CcceeEeecEEecCCCchHHHHHHHHHHHHHHhhc
Q 047385 2 SNITVCARFRPLSSKERSNHGDSVCIHGIDNESFIFKD-DK----EENFKFGFDRVFYEKSEQAEVFEFLALPIIRDAFN 76 (483)
Q Consensus 2 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~F~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~ 76 (483)
.+|.|+|||||++++|...+....|... ++..+.... +. .....|.||+||+++++|++||+..++|+|+.++.
T Consensus 6 ~~i~V~vrvRP~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~~~~~~~~y~FD~VF~~~~t~~~VYe~~tkpiv~~~l~ 84 (675)
T KOG0242|consen 6 EKILVSVRVRPLNEREDARGDRSDWHCI-NDTTLFKRVTKSLPEKSKPEKYEFDRVFGEESTQEDVYERTTKPLLLSVLE 84 (675)
T ss_pred ceeEEEEEeCCCCccccccCCccceEec-CCceeEeeccccccccccccceeeeeecCCCCCHHHHHHhccHHHHHHHhc
Confidence 3799999999999986554433333322 222222221 11 11489999999999999999999999999999999
Q ss_pred CcceEEEeeCCCCCCccceecCCCCCCccccccCchhhhHHHHHHhhhcCCCCcEEEEEEeEEEEecceeecccCCCCCc
Q 047385 77 GMNGTVITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTVDELFDCMKSSDASVKFTIKLSMVEIYMEKVRDLFDLSRDN 156 (483)
Q Consensus 77 G~n~ti~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyne~v~DLL~~~~~~ 156 (483)
|||+||||||||||||||||.|. ..+|||||+++.+||+.|.... ...|.|.|||+|||||.|+|||+++...
T Consensus 85 G~N~TVFAYG~TgSGKTyTM~G~------~~~PGii~la~~dif~~I~~~~-~r~f~v~vSYlEIYNE~I~DLL~~~~~~ 157 (675)
T KOG0242|consen 85 GFNATVFAYGQTGSGKTYTMSGS------EDDPGIIPLAMKDIFEKIDKSG-EREFSVRVSYLEIYNERIRDLLNPDGGD 157 (675)
T ss_pred CcccceeeecCCCCCCceEEecc------CCCCCeeehHHHHHHHHHHhcC-CceeEEEEEEEEEeccccccccCCCCCC
Confidence 99999999999999999999995 4679999999999999999875 7899999999999999999999999999
Q ss_pred ceeeeccCCceEecCcEEEEecCHHHHHHHHHhhhhccCcccccCCCCCCCceEEEEEEEEEeecccceeEeeeeeeeeC
Q 047385 157 IQIKESRVQGILLSGVTEIYVFNSAEALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQELTKEKRVKAGKLLLVDL 236 (483)
Q Consensus 157 l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~skL~~VDL 236 (483)
+.+++|+.+|++|.||++..|.|.++++++|..|.++|+++.|.+|..|||||+||+|.+.+....... ..++|+||||
T Consensus 158 L~irED~~~gi~V~gL~e~~v~s~e~~~~ll~~g~~~R~~g~T~~N~~SSRSHaIl~i~i~s~~~~~~~-~~s~L~lIDL 236 (675)
T KOG0242|consen 158 LRLREDSEGGIVVPGLTEETVSSREELLELLQKGNKNRTTGETNLNEQSSRSHAILRITVESRGREASS-RVSKLNLIDL 236 (675)
T ss_pred ceEeEcCCCCEEecCCeeecCCCHHHHHHHHHHhhccCcccccccccccchhhheeeEEEEeccccccc-hhheehhhhh
Confidence 999999999999999999999999999999999999999999999999999999999999997654332 7789999999
Q ss_pred CCCccccccCCchhhHHHHHHhhhhHHHHHHHHHHhccCCCCCCCCccCCCcccchhhhhccCCCcceeeeEeeCCCCCC
Q 047385 237 AGSEKAEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSPGKAFHIPYRDSKLTRILQDALGGNSRTALLCCCSPSTSN 316 (483)
Q Consensus 237 AGsEr~~~t~~~g~~~~E~~~IN~SL~aL~~vI~aL~~~~~~~~~~iPyRdSkLT~lLqdsLgGns~t~mI~~isp~~~~ 316 (483)
|||||+.+|++.|.|++||++||+||++||+||++|+++. ...||||||||||||||++||||++|+|||||+|+..+
T Consensus 237 AGSERas~T~~~G~RlkEG~~INrSLlaLgtVI~~Ls~~~--~~~hipYRDSKLTRiLq~sLgGn~rt~~I~tisp~~~~ 314 (675)
T KOG0242|consen 237 AGSERASRTGNEGVRLKEGAHINRSLLALGTVINKLSEGK--RPRHIPYRDSKLTRLLQDSLGGNARTAIIATISPSSSH 314 (675)
T ss_pred hhhhhhhhhhccceeccccchhhHHHHHHHHHHHHHcccc--ccCCCCccccHHHHhchhhcCCCccEEEEEEeCchhhH
Confidence 9999999999999999999999999999999999999852 34499999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccccCCcccccccch
Q 047385 317 SAESLSTLRFGTRAKHIKASPHAHCSKESN 346 (483)
Q Consensus 317 ~~ETlsTL~fa~rak~I~~~~~~n~~~~~~ 346 (483)
|+||.+||+||+|||+|++++.+|....+.
T Consensus 315 ~~eT~nTL~fAsrak~i~~~~~~n~~~~~~ 344 (675)
T KOG0242|consen 315 YEETKNTLKFASRAKEITTKAQVNVILSDK 344 (675)
T ss_pred HHHHHHHHHHHHHhhhcccccccceecchh
Confidence 999999999999999999999999776543
No 9
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=100.00 E-value=5.8e-84 Score=662.33 Aligned_cols=316 Identities=34% Similarity=0.570 Sum_probs=291.7
Q ss_pred CeEEEEEeCCCCccccccCCCceEEEecCCceEEEeCCCC------------cceeEeecEEecCCCchHHHHHHHHHHH
Q 047385 3 NITVCARFRPLSSKERSNHGDSVCIHGIDNESFIFKDDKE------------ENFKFGFDRVFYEKSEQAEVFEFLALPI 70 (483)
Q Consensus 3 ~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~F~FD~Vf~~~~~Q~~vf~~~~~pl 70 (483)
+|+|+|||||+++.|... +...|+...++.++.+.+|.. ..+.|.||+||+++++|++||+.++.|+
T Consensus 2 ~i~V~vRvRP~~~~E~~~-~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~tq~~vy~~~~~p~ 80 (345)
T cd01368 2 PVKVYLRVRPLSKDELES-EDEGCIEVINSTTIQLHPPKGSAARKSERNGGQKETKFSFSKVFGPNTTQKEFFEGTALPL 80 (345)
T ss_pred CEEEEEEeCcCCchhhcc-CCCceEEEcCCCEEEEeCCccccccccccccCCCceEeecCeEECCCCCHHHHHHHHHHHH
Confidence 699999999999998753 457788888998988877643 4678999999999999999999999999
Q ss_pred HHHhhcCcceEEEeeCCCCCCccceecCCCCCCccccccCchhhhHHHHHHhhhcCCCCcEEEEEEeEEEEecceeeccc
Q 047385 71 IRDAFNGMNGTVITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTVDELFDCMKSSDASVKFTIKLSMVEIYMEKVRDLF 150 (483)
Q Consensus 71 v~~~l~G~n~ti~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyne~v~DLL 150 (483)
|+++++|+|+||||||||||||||||+|++ .++|||||++++||+.+.. |.|++||+|||||+|+|||
T Consensus 81 v~~~l~G~n~ti~aYGqtGSGKTyTm~G~~------~~~Gli~r~~~~lF~~~~~------~~v~~S~~EIyne~v~DLL 148 (345)
T cd01368 81 VQDLLKGKNSLLFTYGVTNSGKTYTMQGSP------GDGGILPRSLDVIFNSIGG------YSVFVSYVEIYNNYIYDLL 148 (345)
T ss_pred HHHHhCCCceEEEEeCCCCCCCeEEecCCC------CCCchHHHHHHHHHHHHHh------eeEEEEEEEEeCCEeEeCC
Confidence 999999999999999999999999999954 5789999999999998865 8999999999999999999
Q ss_pred CCCCC------cceeeeccCCceEecCcEEEEecCHHHHHHHHHhhhhccCcccccCCCCCCCceEEEEEEEEEeecc--
Q 047385 151 DLSRD------NIQIKESRVQGILLSGVTEIYVFNSAEALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQELTK-- 222 (483)
Q Consensus 151 ~~~~~------~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~-- 222 (483)
++... .+.+++++.++++|.|++++.|.|++|++++|..|.++|.+++|.+|..|||||+||+|++.+....
T Consensus 149 ~~~~~~~~~~~~l~i~ed~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~i~~i~v~~~~~~~~ 228 (345)
T cd01368 149 EDSPSSTKKRQSLRLREDHNGNMYVAGLTEVEVSSTEEAREVFKRGQKNRRVAGTKLNRESSRSHSVFTIKLVQAPGDSD 228 (345)
T ss_pred CCccccccCCCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHhhccceeccccCcCCCCCceEEEEEEEEEeccCcc
Confidence 87543 6899999999999999999999999999999999999999999999999999999999999986543
Q ss_pred ------cceeEeeeeeeeeCCCCccccccCCchhhHHHHHHhhhhHHHHHHHHHHhccCCCC--CCCCccCCCcccchhh
Q 047385 223 ------EKRVKAGKLLLVDLAGSEKAEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSPG--KAFHIPYRDSKLTRIL 294 (483)
Q Consensus 223 ------~~~~~~skL~~VDLAGsEr~~~t~~~g~~~~E~~~IN~SL~aL~~vI~aL~~~~~~--~~~~iPyRdSkLT~lL 294 (483)
......|+|+|||||||||..++++.|.+++|+..||+||++|++||.+|++.... +..||||||||||+||
T Consensus 229 ~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~aL~~vi~aL~~~~~~~~~~~~iPyR~SkLT~lL 308 (345)
T cd01368 229 GDVDQDKDQITVSQLSLVDLAGSERTSRTQNTGERLKEAGNINTSLMTLGKCIEVLRENQLSGSTNKMVPYRDSKLTHLF 308 (345)
T ss_pred cccccCCCceEEEEEEEEecccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhcccCCCCcCCCcCCHHHHHH
Confidence 24567899999999999999999999999999999999999999999999874321 5789999999999999
Q ss_pred hhccCCCcceeeeEeeCCCCCCHHHHHHHHHHHHHhc
Q 047385 295 QDALGGNSRTALLCCCSPSTSNSAESLSTLRFGTRAK 331 (483)
Q Consensus 295 qdsLgGns~t~mI~~isp~~~~~~ETlsTL~fa~rak 331 (483)
||+||||++|+||+||||+..+++||++||+||.+|+
T Consensus 309 ~~~l~g~s~t~~I~~vsp~~~~~~eTl~tL~fa~~a~ 345 (345)
T cd01368 309 QNYFDGEGKARMIVNVNPCASDYDETLHVMKFSAIAQ 345 (345)
T ss_pred HHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999985
No 10
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=100.00 E-value=6.3e-83 Score=657.93 Aligned_cols=331 Identities=38% Similarity=0.613 Sum_probs=302.1
Q ss_pred CCeEEEEEeCCCCccccccCCCceEEEecCCceEEEeCCC------CcceeEeecEEecCC-------CchHHHHHHHHH
Q 047385 2 SNITVCARFRPLSSKERSNHGDSVCIHGIDNESFIFKDDK------EENFKFGFDRVFYEK-------SEQAEVFEFLAL 68 (483)
Q Consensus 2 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~F~FD~Vf~~~-------~~Q~~vf~~~~~ 68 (483)
++|+|+||+||++..|...+ +..|+ .++++.+.+.++. .....|.||+||++. ++|++||+.++.
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~-~~~~~-~~~~~~v~v~~~~~~~~~~~~~~~f~FD~vf~~~~~~~~~~~tq~~vf~~~~~ 78 (356)
T cd01365 1 ANVKVAVRVRPFNSREKNRG-SKCIV-QMPGKVTTLKNPKAADATRKKPKSFSFDHSYWSHDSEDPHYASQEDVFEDLGR 78 (356)
T ss_pred CCEEEEEEeCcCChhhhccC-CceEE-EECCCEEEEEcCCcccccccCceEEECCeEecccCCCCCCCCCHHHHHHHHHH
Confidence 58999999999999987643 34444 4455777777664 356899999999998 999999999999
Q ss_pred HHHHHhhcCcceEEEeeCCCCCCccceecCCCCCCccccccCchhhhHHHHHHhhhcCCC-CcEEEEEEeEEEEecceee
Q 047385 69 PIIRDAFNGMNGTVITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTVDELFDCMKSSDA-SVKFTIKLSMVEIYMEKVR 147 (483)
Q Consensus 69 plv~~~l~G~n~ti~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~i~~~~~-~~~~~v~vS~~EIyne~v~ 147 (483)
|+|+++++|+|+||||||||||||||||+|+. .++|||||++++||+.+..... ...|.|++||+|||||+|+
T Consensus 79 p~v~~~l~G~n~~i~ayGqtGSGKT~Tm~G~~------~~~Gli~r~~~~Lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~ 152 (356)
T cd01365 79 ELLDHAFEGYNVCLFAYGQTGSGKSYTMMGYK------EEKGIIPRLCEELFQRIESKKEQNLSYEVEVSYMEIYNEKVR 152 (356)
T ss_pred HHHHHHhCCCceEEEEecCCCCCCeEEecCCC------CCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCeee
Confidence 99999999999999999999999999999954 4689999999999999987644 5789999999999999999
Q ss_pred cccCCCC---CcceeeeccCCceEecCcEEEEecCHHHHHHHHHhhhhccCcccccCCCCCCCceEEEEEEEEEeecc--
Q 047385 148 DLFDLSR---DNIQIKESRVQGILLSGVTEIYVFNSAEALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQELTK-- 222 (483)
Q Consensus 148 DLL~~~~---~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~-- 222 (483)
|||++.. ..+.+++++.++++|.|++++.|.|++|+++++..|.++|.+++|.+|..|||||+||+|++.+....
T Consensus 153 DLL~~~~~~~~~l~i~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~l~v~~~~~~~~ 232 (356)
T cd01365 153 DLLNPKKKNKGNLKVREHPVLGPYVEDLSKVAVTSYEDIQNLLEEGNKSRTTASTNMNDTSSRSHAVFTIVLTQKKLDKE 232 (356)
T ss_pred eCCCCCccCCcCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhcccccCCCCCCCcCCceEEEEEEEEEEecccC
Confidence 9998874 58999999999999999999999999999999999999999999999999999999999999987543
Q ss_pred --cceeEeeeeeeeeCCCCccccccCCchhhHHHHHHhhhhHHHHHHHHHHhccCCC----CCCCCccCCCcccchhhhh
Q 047385 223 --EKRVKAGKLLLVDLAGSEKAEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSP----GKAFHIPYRDSKLTRILQD 296 (483)
Q Consensus 223 --~~~~~~skL~~VDLAGsEr~~~t~~~g~~~~E~~~IN~SL~aL~~vI~aL~~~~~----~~~~~iPyRdSkLT~lLqd 296 (483)
......|+|+|||||||||..+++..+.+++|+..||+||++|++||.+|+..+. ++..||||||||||+||+|
T Consensus 233 ~~~~~~~~s~l~~VDLAGsEr~~~~~~~~~~~~E~~~IN~SL~aL~~vi~~l~~~~~~~~~~~~~~ipyR~SkLT~lL~~ 312 (356)
T cd01365 233 TDLTTEKVSKISLVDLAGSERASSTGAEGDRLKEGSNINKSLTTLGKVISALADNSSAKSKKKSSFIPYRDSVLTWLLKE 312 (356)
T ss_pred CCCCceEEEEEEeeecccccccccccccchhhHHHHHHhHHHHHHHHHHHHHHhcccccccCCCCcCCCcCcHHHHHHHH
Confidence 4567789999999999999999999999999999999999999999999987542 3568999999999999999
Q ss_pred ccCCCcceeeeEeeCCCCCCHHHHHHHHHHHHHhcccccCCccc
Q 047385 297 ALGGNSRTALLCCCSPSTSNSAESLSTLRFGTRAKHIKASPHAH 340 (483)
Q Consensus 297 sLgGns~t~mI~~isp~~~~~~ETlsTL~fa~rak~I~~~~~~n 340 (483)
+||||++|+||+||||+..+++||++||+||+|+++|++.|++|
T Consensus 313 ~lgg~s~t~~I~~vsp~~~~~~eTl~tL~fa~~~~~i~~~~~~~ 356 (356)
T cd01365 313 NLGGNSKTAMIATISPADINYEETLSTLRYADRAKKIVNVAVVN 356 (356)
T ss_pred hcCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCccccC
Confidence 99999999999999999999999999999999999999999875
No 11
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.2e-83 Score=680.22 Aligned_cols=335 Identities=38% Similarity=0.619 Sum_probs=306.5
Q ss_pred CCeEEEEEeCCCCccccccCCCceEEEecCCceEEEeCCC--------CcceeEeecEEecCC-------CchHHHHHHH
Q 047385 2 SNITVCARFRPLSSKERSNHGDSVCIHGIDNESFIFKDDK--------EENFKFGFDRVFYEK-------SEQAEVFEFL 66 (483)
Q Consensus 2 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~F~FD~Vf~~~-------~~Q~~vf~~~ 66 (483)
++|+|+|||||++.+|... ..-|+..++.+..++.++. ...++|.||++|++. +.|+.||+.+
T Consensus 4 ~kVkVaVRVRP~nrREl~l--~tk~vv~vd~~q~vl~~~pp~~~~~~~k~pktFAFDhcF~s~dpes~n~agQE~Vf~~l 81 (1714)
T KOG0241|consen 4 AKVKVAVRVRPMNRRELEL--STKCVVEVDKNQTVLHPPPPNHKIGESKGPKTFAFDHCFWSMDPESKNYAGQETVFKCL 81 (1714)
T ss_pred cceEEEEEecccchhhhcc--cccceEEeccCceeecCCCccccccccCCCceeecccccccCCccccccccchhHHHhc
Confidence 4799999999999999863 4568888888776665542 346899999999764 6899999999
Q ss_pred HHHHHHHhhcCcceEEEeeCCCCCCccceecCCCCCCccccccCchhhhHHHHHHhhhcC-CCCcEEEEEEeEEEEecce
Q 047385 67 ALPIIRDAFNGMNGTVITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTVDELFDCMKSS-DASVKFTIKLSMVEIYMEK 145 (483)
Q Consensus 67 ~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~i~~~-~~~~~~~v~vS~~EIyne~ 145 (483)
+..+|+++|+|||+||||||||||||||||+|.. +.+|||||++..||.+|... .+...|.|.|||+|||||+
T Consensus 82 G~~il~naf~GyNaCifaYGQtGsGKsYsmmGt~------~QpGiIPrlc~~lFe~I~k~~n~~~tfkVeVSymEIynEk 155 (1714)
T KOG0241|consen 82 GEGILENAFQGYNACIFAYGQTGSGKSYSMMGTA------EQPGIIPRLCESLFERIDKESNPSQTFKVEVSYMEIYNEK 155 (1714)
T ss_pred chHHHHHHhhccceeeEEecccCCCceeEeeccC------CCCCchhHHHHHHHHHHHhccCCCceEEEEEEHHHHhhcc
Confidence 9999999999999999999999999999999954 56899999999999999754 4568899999999999999
Q ss_pred eecccCCCC--CcceeeeccCCceEecCcEEEEecCHHHHHHHHHhhhhccCcccccCCCCCCCceEEEEEEEEEeec--
Q 047385 146 VRDLFDLSR--DNIQIKESRVQGILLSGVTEIYVFNSAEALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQELT-- 221 (483)
Q Consensus 146 v~DLL~~~~--~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~-- 221 (483)
++|||+|.. ..++++++...|+||.||++..|.|++|+-.++..|+++|++++|+||..|||||++|.|.|.|.-.
T Consensus 156 v~DLLdPk~ssqtlkVrehsvlGp~vdGLS~laV~S~qdId~lm~egnKsrtvaatnmn~EssrsHaVFslvvtQ~l~D~ 235 (1714)
T KOG0241|consen 156 VRDLLDPKGSSQTLKVREHSVLGPYVDGLSQLAVTSFQDIDSLMSEGNKSRTVAATNMNEESSRSHAVFSLVVTQTLYDL 235 (1714)
T ss_pred hhhhhCCCCCcceeEEeecccccccccchhhhhcccHHHHHHHHHhccccceeeeecccccccccceeEEEEEeeEEecc
Confidence 999999865 4799999999999999999999999999999999999999999999999999999999999998743
Q ss_pred --ccceeEeeeeeeeeCCCCccccccCCchhhHHHHHHhhhhHHHHHHHHHHhccCCCC--CCCCccCCCcccchhhhhc
Q 047385 222 --KEKRVKAGKLLLVDLAGSEKAEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSPG--KAFHIPYRDSKLTRILQDA 297 (483)
Q Consensus 222 --~~~~~~~skL~~VDLAGsEr~~~t~~~g~~~~E~~~IN~SL~aL~~vI~aL~~~~~~--~~~~iPyRdSkLT~lLqds 297 (483)
+....+.|+|.+||||||||+.++++.|.|++||++||+||++||.||+||++++.+ +.++||||||.|||||||+
T Consensus 236 ktg~SgeKvsklslVDLAgserasktga~g~rlkegsNinkSLttLglVIsaLadq~n~kgkdKfvPYrDSVLTwLLkD~ 315 (1714)
T KOG0241|consen 236 KTGHSGEKVSKLSLVDLAGSERASKTGAAGSRLKEGSNINKSLTTLGLVISALADQKNGKGKDKFVPYRDSVLTWLLKDN 315 (1714)
T ss_pred ccCcchhheeeeeEEEeccccccccccchhhhhhhcCCcchhhHHHHHHHHHHHHhhcCCCccccccchhHHHHHHHHhh
Confidence 233456899999999999999999999999999999999999999999999987654 4779999999999999999
Q ss_pred cCCCcceeeeEeeCCCCCCHHHHHHHHHHHHHhcccccCCccccccc
Q 047385 298 LGGNSRTALLCCCSPSTSNSAESLSTLRFGTRAKHIKASPHAHCSKE 344 (483)
Q Consensus 298 LgGns~t~mI~~isp~~~~~~ETlsTL~fa~rak~I~~~~~~n~~~~ 344 (483)
|||||+|+||+||||++++|+|||+|||||+|||+|+|.+.+|+++.
T Consensus 316 LGGNsrTvMiatvSPaAdnyeeTlStLRYadrAkrIvN~avvNedpn 362 (1714)
T KOG0241|consen 316 LGGNSRTVMIATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDPN 362 (1714)
T ss_pred cCCCceeEEEEEecccccchHHHHHHHHHHHHHHHhhccccccCCch
Confidence 99999999999999999999999999999999999999999999875
No 12
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=100.00 E-value=4.6e-82 Score=650.85 Aligned_cols=334 Identities=40% Similarity=0.619 Sum_probs=300.8
Q ss_pred CCeEEEEEeCCCCccccccCCCceEEEecCC-ceEEEeCCC---CcceeEeecEEecCCCchHHHHHHHHHHHHHHhhcC
Q 047385 2 SNITVCARFRPLSSKERSNHGDSVCIHGIDN-ESFIFKDDK---EENFKFGFDRVFYEKSEQAEVFEFLALPIIRDAFNG 77 (483)
Q Consensus 2 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~F~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G 77 (483)
+||+|+||+||+...|...+ ...|+...+. ..+.+.++. .....|.||+||+++++|++||+.++.|+|+++++|
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~-~~~~i~~~~~~~~i~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vy~~~~~plv~~~~~G 80 (352)
T cd01364 2 SNIQVVVRCRPRNSRERKEK-SSVVVEVSGSSKEIIVSTGGADKQSTKTYTFDKVFGPEADQIEVYSQVVSPILDEVLMG 80 (352)
T ss_pred CCEEEEEEcCcCCccccccC-CCeEEEEcCCCcEEEEcCCCcccccceeEeccccCCCCCCHHHHHHHHHHHHHHHHhCC
Confidence 58999999999999996643 3445555444 555555542 256899999999999999999999999999999999
Q ss_pred cceEEEeeCCCCCCccceecCCCCCCc-----cccccCchhhhHHHHHHhhhcCCCCcEEEEEEeEEEEecceeecccCC
Q 047385 78 MNGTVITYGQTGAGKTFSMEGPSILAC-----DEQKKGLLQRTVDELFDCMKSSDASVKFTIKLSMVEIYMEKVRDLFDL 152 (483)
Q Consensus 78 ~n~ti~ayG~tgSGKT~Tm~G~~~~~~-----~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyne~v~DLL~~ 152 (483)
||+||||||+|||||||||+|+..... .++.+|||||++++||+.+... ...|.|++||+|||||+|+|||++
T Consensus 81 ~n~~i~ayG~tgSGKTyTl~G~~~~~~~~~~~~~~~~Glipr~~~~Lf~~~~~~--~~~~~v~~S~~EIy~e~v~DLL~~ 158 (352)
T cd01364 81 YNCTIFAYGQTGTGKTYTMEGDRTDNKGSTWELSPHAGIIPRALYQLFEKLESQ--NTEYSVKVSYLELYNEELFDLLSS 158 (352)
T ss_pred CeEEEEECCCCCCCCcEEecCCCcccccccccccccCCchHHHHHHHHHHHHhc--cceeEEEEEEEEeeCCeeeeCCCC
Confidence 999999999999999999999764421 1467899999999999999876 568999999999999999999998
Q ss_pred C---CCcceeeec--cCCceEecCcEEEEecCHHHHHHHHHhhhhccCcccccCCCCCCCceEEEEEEEEEeecc---cc
Q 047385 153 S---RDNIQIKES--RVQGILLSGVTEIYVFNSAEALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQELTK---EK 224 (483)
Q Consensus 153 ~---~~~l~i~e~--~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~---~~ 224 (483)
. ..++.++++ ..+|++|.|++++.|.|++|++++|..|.++|.+++|.+|..|||||+||+|++.+.... ..
T Consensus 159 ~~~~~~~l~i~e~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRSH~i~~i~i~~~~~~~~~~~ 238 (352)
T cd01364 159 ESDLNKPLRIFDDTNNKGGVVIQGLEEITVNNANEGLKLLEKGSAKRKTAATLMNDQSSRSHSIFSITIHIKETTISGEE 238 (352)
T ss_pred ccccCccceEEeccCcCCCEEeCCcEEEEeCCHHHHHHHHHHHhhhcccccCcCCCCCCCCceEEEEEEEEeccCCCCCc
Confidence 7 568999999 589999999999999999999999999999999999999999999999999999986542 34
Q ss_pred eeEeeeeeeeeCCCCccccccCCchhhHHHHHHhhhhHHHHHHHHHHhccCCCCCCCCccCCCcccchhhhhccCCCcce
Q 047385 225 RVKAGKLLLVDLAGSEKAEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSPGKAFHIPYRDSKLTRILQDALGGNSRT 304 (483)
Q Consensus 225 ~~~~skL~~VDLAGsEr~~~t~~~g~~~~E~~~IN~SL~aL~~vI~aL~~~~~~~~~~iPyRdSkLT~lLqdsLgGns~t 304 (483)
....|+|+||||||||+..+.++.+.+++|++.||+||++|++||.+|+. +..|||||+||||+||+|+|||||+|
T Consensus 239 ~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~iN~SL~~L~~vi~al~~----~~~~vpyR~S~LT~lL~~~Lgg~s~t 314 (352)
T cd01364 239 LVKIGKLNLVDLAGSENIGRSGAENKRAREAGNINQSLLTLGRVINALVE----KSPHIPYRESKLTRLLQDSLGGRTKT 314 (352)
T ss_pred cEEEEEEEEEECCCccccccccCcchhhHHHhhhhHHHHHHHHHHHHHHc----CCCCCCCcccHHHHHHHHhcCCCceE
Confidence 45679999999999999999999999999999999999999999999987 45799999999999999999999999
Q ss_pred eeeEeeCCCCCCHHHHHHHHHHHHHhcccccCCccccc
Q 047385 305 ALLCCCSPSTSNSAESLSTLRFGTRAKHIKASPHAHCS 342 (483)
Q Consensus 305 ~mI~~isp~~~~~~ETlsTL~fa~rak~I~~~~~~n~~ 342 (483)
+||+||||+..+++||++||+||+||++|+|.|.+|++
T Consensus 315 ~~I~~vsp~~~~~~eTl~TL~~a~~~~~i~n~P~~n~~ 352 (352)
T cd01364 315 SIIATISPASINLEETLSTLEYAHRAKNIKNKPEVNQK 352 (352)
T ss_pred EEEEEeCCCcccHHHHHHHHHHHHHHhhccCccccCCC
Confidence 99999999999999999999999999999999999863
No 13
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=100.00 E-value=3.5e-81 Score=637.80 Aligned_cols=325 Identities=53% Similarity=0.847 Sum_probs=303.4
Q ss_pred CCCeEEEEEeCCCCccccccCCCceEEEecCCceEEEeCCCCcceeEeecEEecCCCchHHHHHHHHHHHHHHhhcCcce
Q 047385 1 MSNITVCARFRPLSSKERSNHGDSVCIHGIDNESFIFKDDKEENFKFGFDRVFYEKSEQAEVFEFLALPIIRDAFNGMNG 80 (483)
Q Consensus 1 m~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ 80 (483)
|.+|+|+||+||+++.|... +...|+...+++++.+.++ ...+.|.||+||+++++|++||+.++.|+|+.+++|+|+
T Consensus 1 ~~~i~V~vRvRP~~~~e~~~-~~~~~v~~~~~~~v~~~~~-~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~~~G~n~ 78 (325)
T cd01369 1 ECNIKVVCRFRPLNEKEELR-GSKSIVKFPGEDTVSIAGS-DDGKTFSFDRVFPPNTTQEDVYNFVAKPIVDDVLNGYNG 78 (325)
T ss_pred CCCeEEEEEcCcCChhhhcc-CCceEEEEcCCCEEEecCC-CCceEEEcCeEECCCCCHHHHHHHHHHHHHHHHHcCccc
Confidence 67999999999999998543 4566887777777777754 456899999999999999999999999999999999999
Q ss_pred EEEeeCCCCCCccceecCCCCCCccccccCchhhhHHHHHHhhhcCCCCcEEEEEEeEEEEecceeecccCCCCCcceee
Q 047385 81 TVITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTVDELFDCMKSSDASVKFTIKLSMVEIYMEKVRDLFDLSRDNIQIK 160 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyne~v~DLL~~~~~~l~i~ 160 (483)
||||||+|||||||||+|+... ..++||+||++++||+.+.......+|.|++||+|||||.++|||++....+.++
T Consensus 79 ~i~ayG~tgSGKT~Tm~G~~~~---~~~~Giipr~~~~Lf~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~l~i~ 155 (325)
T cd01369 79 TIFAYGQTGSGKTYTMEGPPGD---PELKGIIPRIVHDIFEHISSMDENLEFHVKVSYLEIYMEKIRDLLDVSKDNLQVH 155 (325)
T ss_pred eEEEeCCCCCCceEEecCCCCc---cccCChHHHHHHHHHHHHhhccCCceEEEEEEEEEEECCChhhcccCccCCceEE
Confidence 9999999999999999997542 3578999999999999998887778999999999999999999999988899999
Q ss_pred eccCCceEecCcEEEEecCHHHHHHHHHhhhhccCcccccCCCCCCCceEEEEEEEEEeecccceeEeeeeeeeeCCCCc
Q 047385 161 ESRVQGILLSGVTEIYVFNSAEALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQELTKEKRVKAGKLLLVDLAGSE 240 (483)
Q Consensus 161 e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~skL~~VDLAGsE 240 (483)
+++.+++++.|++++.|.|++|++.+|..|.++|++++|.+|..|||||+||+|+|.+.+........|+|+||||||||
T Consensus 156 ~~~~~~~~v~gl~~~~v~s~~e~~~~i~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~s~l~~VDLAGsE 235 (325)
T cd01369 156 EDKNRGVYVKGLTERFVSSPEEVLEVINEGKSNRAVASTNMNEESSRSHSIFLITLKQENVETGSKKRGKLFLVDLAGSE 235 (325)
T ss_pred EcCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccCcCCCccccccEEEEEEEEEEecCCCCEEEEEEEEEECCCCC
Confidence 99999999999999999999999999999999999999999999999999999999998877777889999999999999
Q ss_pred cccccCCchhhHHHHHHhhhhHHHHHHHHHHhccCCCCCCCCccCCCcccchhhhhccCCCcceeeeEeeCCCCCCHHHH
Q 047385 241 KAEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSPGKAFHIPYRDSKLTRILQDALGGNSRTALLCCCSPSTSNSAES 320 (483)
Q Consensus 241 r~~~t~~~g~~~~E~~~IN~SL~aL~~vI~aL~~~~~~~~~~iPyRdSkLT~lLqdsLgGns~t~mI~~isp~~~~~~ET 320 (483)
+..++++.|.+++|+..||+||++|++||.+|+++ +..||||||||||+||+|+|||+|+|+||+||||+..+++||
T Consensus 236 ~~~~~~~~~~~~~e~~~in~sl~~L~~vi~aL~~~---~~~~vpyR~S~LT~lL~~~L~g~s~t~~I~~vsp~~~~~~eT 312 (325)
T cd01369 236 KVSKTGAEGQTLEEAKKINKSLSALGNVINALTDG---KSTHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSYNESET 312 (325)
T ss_pred cccccCCcchhHHHHHHHhHHHHHHHHHHHHHHcC---CCCcCCCccCHHHHHHHHhcCCCCeEEEEEEeCCccccHHHH
Confidence 99999999999999999999999999999999974 337999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccc
Q 047385 321 LSTLRFGTRAKHI 333 (483)
Q Consensus 321 lsTL~fa~rak~I 333 (483)
++||+||+|||+|
T Consensus 313 l~TL~~a~r~~~i 325 (325)
T cd01369 313 LSTLRFGARAKTI 325 (325)
T ss_pred HHHHHHHHHhhcC
Confidence 9999999999986
No 14
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=100.00 E-value=7.5e-81 Score=634.11 Aligned_cols=313 Identities=35% Similarity=0.526 Sum_probs=284.3
Q ss_pred CCeEEEEEeCCCCccccccCCCceEEEecCCceEEEeCCCC--------cceeEeecEEecCCCchHHHHHHHHHHHHHH
Q 047385 2 SNITVCARFRPLSSKERSNHGDSVCIHGIDNESFIFKDDKE--------ENFKFGFDRVFYEKSEQAEVFEFLALPIIRD 73 (483)
Q Consensus 2 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~F~FD~Vf~~~~~Q~~vf~~~~~plv~~ 73 (483)
.+|+|+|||||+++.|...+ ...++...+++++.+.++.. +...|+||+||+++++|++||+.++.|+|+.
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vf~~~~~plv~~ 79 (322)
T cd01367 1 MKITVAVRKRPLNDKELSKG-ETDVVSCESNPTVTVHEPKTKVDLTKYIEKHTFRFDYVFDEAVTNEEVYRSTVKPLIPH 79 (322)
T ss_pred CCeEEEEEcCcCChhhhccC-CceEEEECCCCEEEEecCccccccccccCCceEecceEECCCCCHHHHHHHHHHHHHHH
Confidence 37999999999999997643 33344444445676665431 2578999999999999999999999999999
Q ss_pred hhcCcceEEEeeCCCCCCccceecCCCCCCccccccCchhhhHHHHHHhhhcCCCCcEEEEEEeEEEEecceeecccCCC
Q 047385 74 AFNGMNGTVITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTVDELFDCMKSSDASVKFTIKLSMVEIYMEKVRDLFDLS 153 (483)
Q Consensus 74 ~l~G~n~ti~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyne~v~DLL~~~ 153 (483)
+++|+|+||||||||||||||||+|+. .++|||||++++||+.++... ..|.|++||+|||||.++|||++
T Consensus 80 ~~~G~n~~i~ayGqtGSGKTyTm~G~~------~~~Glipr~~~~lf~~~~~~~--~~~~v~~S~~EIy~e~v~DLL~~- 150 (322)
T cd01367 80 VFEGGVATCFAYGQTGSGKTYTMLGDE------NQEGLYALAARDIFRLLAQPN--DDLGVTVSFFEIYGGKLFDLLND- 150 (322)
T ss_pred HhCCCceEEEeccCCCCCCceEecCcC------CcCccHHHHHHHHHHHHhccc--cccEEEEEEEeeecCchhhhccC-
Confidence 999999999999999999999999954 578999999999999998764 68999999999999999999997
Q ss_pred CCcceeeeccCCceEecCcEEEEecCHHHHHHHHHhhhhccCcccccCCCCCCCceEEEEEEEEEeecccceeEeeeeee
Q 047385 154 RDNIQIKESRVQGILLSGVTEIYVFNSAEALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQELTKEKRVKAGKLLL 233 (483)
Q Consensus 154 ~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~skL~~ 233 (483)
.+.+.+++++.++++|.|++++.|.|++|++++|..|.++|.+++|.+|..|||||+||+|++.+... ....|+|+|
T Consensus 151 ~~~l~i~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~---~~~~s~l~~ 227 (322)
T cd01367 151 RKRLSVLEDGKGNVQIVGLTEKPVTSVDELLELIESGNSLRTTGSTGANDQSSRSHAILQIILKNKKL---NKLLGKLSF 227 (322)
T ss_pred ccceeEEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHhcccccccCcCCCCcccceEEEEEEEEEecC---CeeEEEEEE
Confidence 56899999999999999999999999999999999999999999999999999999999999998654 567899999
Q ss_pred eeCCCCccccccC-CchhhHHHHHHhhhhHHHHHHHHHHhccCCCCCCCCccCCCcccchhhhhccCCCcceeeeEeeCC
Q 047385 234 VDLAGSEKAEKTG-AEGKVLEEAKTINKSLSALGNVISALTCGSPGKAFHIPYRDSKLTRILQDALGGNSRTALLCCCSP 312 (483)
Q Consensus 234 VDLAGsEr~~~t~-~~g~~~~E~~~IN~SL~aL~~vI~aL~~~~~~~~~~iPyRdSkLT~lLqdsLgGns~t~mI~~isp 312 (483)
||||||||...++ ..+++++|+..||+||++|++||.+|+. +..||||||||||+||||+||||++|+||+||||
T Consensus 228 vDLAGsE~~~~~~~~~~~~~~e~~~IN~SL~~L~~vi~al~~----~~~~iPyRdSkLT~lL~~~L~g~~~t~~I~~vsp 303 (322)
T cd01367 228 IDLAGSERGADTSEHDRQTRKEGAEINKSLLALKECIRALAS----NKAHVPFRGSKLTQVLRDSFIGNSKTVMIATISP 303 (322)
T ss_pred eecCCccccccccccchhhHHhHhHHhHHHHHHHHHHHHHhc----CCCcCCCccCHHHHHHHHhhCCCCeEEEEEEeCC
Confidence 9999999998866 4688999999999999999999999997 3479999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhc
Q 047385 313 STSNSAESLSTLRFGTRAK 331 (483)
Q Consensus 313 ~~~~~~ETlsTL~fa~rak 331 (483)
+..+++||++||+||+|+|
T Consensus 304 ~~~~~~eTl~tL~fa~r~k 322 (322)
T cd01367 304 SASSCEHTLNTLRYADRVK 322 (322)
T ss_pred chhhHHHHHHHHHHHHhhC
Confidence 9999999999999999986
No 15
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=100.00 E-value=1.6e-80 Score=634.64 Aligned_cols=325 Identities=42% Similarity=0.657 Sum_probs=293.8
Q ss_pred CCeEEEEEeCCCCccccccCCCceEEEecCCceEEEeCCC----CcceeEeecEEecCCCchHHHHHHHHHHHHHHhhcC
Q 047385 2 SNITVCARFRPLSSKERSNHGDSVCIHGIDNESFIFKDDK----EENFKFGFDRVFYEKSEQAEVFEFLALPIIRDAFNG 77 (483)
Q Consensus 2 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~F~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G 77 (483)
.+|+|+|||||+++.|...+....+....+...+.+.++. ...+.|.||+||+++++|++||+.++.|+|+++++|
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~vy~~~~~plv~~~~~G 80 (333)
T cd01371 1 ENVKVVVRCRPLNKREKSEGAPEIVGVDENRGQVTVHNPKADAKEPPKVFTFDAVYDPNSTQEDVYNETARPLVDSVLEG 80 (333)
T ss_pred CCeEEEEEcCcCChhhhhcCCCeEEEEcCCCCEEEEeCCcccccCCCceeeeccccCCCccHHHHHHHHHHHHHHHHhCC
Confidence 4899999999999998765433322223445556666553 356889999999999999999999999999999999
Q ss_pred cceEEEeeCCCCCCccceecCCCCCCccccccCchhhhHHHHHHhhhcCCCCcEEEEEEeEEEEecceeecccCCCC-Cc
Q 047385 78 MNGTVITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTVDELFDCMKSSDASVKFTIKLSMVEIYMEKVRDLFDLSR-DN 156 (483)
Q Consensus 78 ~n~ti~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyne~v~DLL~~~~-~~ 156 (483)
+|+||||||+|||||||||+|+.. +..++|||||++++||+.+.... ...|.|.+||+|||||+|+|||++.. ..
T Consensus 81 ~n~~i~ayG~tgSGKTyTm~G~~~---~~~~~Glipr~~~~Lf~~~~~~~-~~~~~v~~S~~Eiy~e~v~DLL~~~~~~~ 156 (333)
T cd01371 81 YNGTIFAYGQTGTGKTFTMEGVRE---PPELRGIIPNSFAHIFGHIAKAE-NVQFLVRVSYLEIYNEEVRDLLGKDQKKK 156 (333)
T ss_pred CceeEEecCCCCCCCcEeecCCCC---cccccchHHHHHHHHHHHHhhcc-CccEEEEEEEEEeeCCeeeeCCCCCCCCc
Confidence 999999999999999999999753 23579999999999999998764 47899999999999999999999876 58
Q ss_pred ceeeeccCCceEecCcEEEEecCHHHHHHHHHhhhhccCcccccCCCCCCCceEEEEEEEEEeecc---cceeEeeeeee
Q 047385 157 IQIKESRVQGILLSGVTEIYVFNSAEALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQELTK---EKRVKAGKLLL 233 (483)
Q Consensus 157 l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~---~~~~~~skL~~ 233 (483)
+.+++++.++++|.|++++.|.|++|+..++..|.++|.++.|.+|..|||||+||+|+|++.+.. ......|+|+|
T Consensus 157 l~i~~~~~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~L~~ 236 (333)
T cd01371 157 LELKERPDRGVYVKDLSMFVVKNAEEMDKLMTLGNKNRSVGATNMNEDSSRSHSIFTITIECSEKGEDGENHIRVGKLNL 236 (333)
T ss_pred eeEEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhhCccccccccCCCCCCcEEEEEEEEEEeccCCCCCcEEEEEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999987653 45567899999
Q ss_pred eeCCCCccccccCCchhhHHHHHHhhhhHHHHHHHHHHhccCCCCCCCCccCCCcccchhhhhccCCCcceeeeEeeCCC
Q 047385 234 VDLAGSEKAEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSPGKAFHIPYRDSKLTRILQDALGGNSRTALLCCCSPS 313 (483)
Q Consensus 234 VDLAGsEr~~~t~~~g~~~~E~~~IN~SL~aL~~vI~aL~~~~~~~~~~iPyRdSkLT~lLqdsLgGns~t~mI~~isp~ 313 (483)
||||||||..++++.+.+++|+..||+||.+|++||.+|+.+ +..|||||+||||+||+|+||||++|+||+||+|.
T Consensus 237 VDLAGsEr~~~~~~~~~~~~E~~~iN~sL~~L~~vi~al~~~---~~~~ipyR~SkLT~lL~~~l~g~s~t~~I~~vsP~ 313 (333)
T cd01371 237 VDLAGSERQSKTGATGDRLKEATKINLSLSALGNVISALVDG---KSTHIPYRDSKLTRLLQDSLGGNSKTVMCANIGPA 313 (333)
T ss_pred EECCCCCcccccCCchhhhHhHhhhhhHHHHHHHHHHHHHhC---CCCcCCCccCHHHHHHHHhcCCCceEEEEEEeCCc
Confidence 999999999999999999999999999999999999999873 44699999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhccc
Q 047385 314 TSNSAESLSTLRFGTRAKHI 333 (483)
Q Consensus 314 ~~~~~ETlsTL~fa~rak~I 333 (483)
..+++||++||+||+|||+|
T Consensus 314 ~~~~~eTl~TL~fa~r~r~I 333 (333)
T cd01371 314 DYNYDETLSTLRYANRAKNI 333 (333)
T ss_pred cccHHHHHHHHHHHHHhhcC
Confidence 99999999999999999986
No 16
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=100.00 E-value=2e-80 Score=636.27 Aligned_cols=327 Identities=41% Similarity=0.658 Sum_probs=297.4
Q ss_pred CeEEEEEeCCCCccccccCCCceEEEecCCceEEEeCCCCcceeEeecEEecCCCchHHHHHHHHHHHHHHhhcCcceEE
Q 047385 3 NITVCARFRPLSSKERSNHGDSVCIHGIDNESFIFKDDKEENFKFGFDRVFYEKSEQAEVFEFLALPIIRDAFNGMNGTV 82 (483)
Q Consensus 3 ~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti 82 (483)
+|+|+||+||+...|... +...|+...+.+..+...+ .+.|.||+||+++++|++||+.++.|+|+.+++|+|+||
T Consensus 2 ~i~V~vRvRP~~~~e~~~-~~~~~~~~~~~~~~v~~~~---~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G~n~~i 77 (341)
T cd01372 2 SVRVAVRVRPLLPKELLE-GCQVCVSVVPGEPQVTVGT---DKSFTFDYVFDPSTSQEEVYNTCVAPLVDGLFEGYNATV 77 (341)
T ss_pred CeEEEEECCCCCchhccc-CCCeEEEEeCCCCEEEecC---CcEEeccccCCCCCCHHHHHHHHHHHHHHHHhCCCccce
Confidence 699999999999998753 4456776555544333332 579999999999999999999999999999999999999
Q ss_pred EeeCCCCCCccceecCCCCCCccccccCchhhhHHHHHHhhhcCCCCcEEEEEEeEEEEecceeecccCCC---CCccee
Q 047385 83 ITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTVDELFDCMKSSDASVKFTIKLSMVEIYMEKVRDLFDLS---RDNIQI 159 (483)
Q Consensus 83 ~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyne~v~DLL~~~---~~~l~i 159 (483)
||||+|||||||||+|+........++|||||++++||+.+.......+|.|.+||+|||||+|+|||++. ...+.+
T Consensus 78 ~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~l~i 157 (341)
T cd01372 78 LAYGQTGSGKTYTMGTAFTASEDEEEVGIIPRAIQHIFKKIDEKKDEPDFQLKVSFLELYNEEVRDLLSPSTSEKSPIQI 157 (341)
T ss_pred eeecCCCCCCcEEecCCCccccccccCChHHHHHHHHHHHHHhccccceEEEEEEEEEeECCeeecCCCCcccCCCCceE
Confidence 99999999999999997643233578999999999999999988766899999999999999999999886 468999
Q ss_pred eeccCCceEecCcEEEEecCHHHHHHHHHhhhhccCcccccCCCCCCCceEEEEEEEEEeecc----------cceeEee
Q 047385 160 KESRVQGILLSGVTEIYVFNSAEALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQELTK----------EKRVKAG 229 (483)
Q Consensus 160 ~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~----------~~~~~~s 229 (483)
++++.++++|.|++++.|.|++|++++|..|.++|..++|.+|..|||||+||+|+|.+.... ......|
T Consensus 158 ~e~~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~~~~~~~~~~~~s 237 (341)
T cd01372 158 REDSKGNIIIVGLTEVTVNSAQEVMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTRKNGPIAPMSGDDKNSTLTS 237 (341)
T ss_pred EECCCCCEecCCCEEEEECCHHHHHHHHHHHHHhcccccccCCCccCcCcEEEEEEEEEEecCCccccccccCCCceeeE
Confidence 999999999999999999999999999999999999999999999999999999999998653 3456789
Q ss_pred eeeeeeCCCCccccccCCchhhHHHHHHhhhhHHHHHHHHHHhccCCCCCCCCccCCCcccchhhhhccCCCcceeeeEe
Q 047385 230 KLLLVDLAGSEKAEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSPGKAFHIPYRDSKLTRILQDALGGNSRTALLCC 309 (483)
Q Consensus 230 kL~~VDLAGsEr~~~t~~~g~~~~E~~~IN~SL~aL~~vI~aL~~~~~~~~~~iPyRdSkLT~lLqdsLgGns~t~mI~~ 309 (483)
+|+||||||||+..++++.+.+++|+..||+||++|++||.+|+..++ +..|||||+||||+||+|+||||++|+||+|
T Consensus 238 ~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~aL~~vi~al~~~~~-~~~~ipyR~S~LT~lL~~~Lgg~s~t~~I~~ 316 (341)
T cd01372 238 KFHFVDLAGSERLKKTGATGDRLKEGISINSGLLALGNVISALGDESK-KGSHVPYRDSKLTRLLQDSLGGNSHTLMIAC 316 (341)
T ss_pred EEEEEECCCCcccccccCchhHhHHHHHHhHHHHHHHHHHHHHHhcCC-CCCCCCCcccHHHHHHHHhcCCCceEEEEEE
Confidence 999999999999999999999999999999999999999999997543 4579999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHHhcccc
Q 047385 310 CSPSTSNSAESLSTLRFGTRAKHIK 334 (483)
Q Consensus 310 isp~~~~~~ETlsTL~fa~rak~I~ 334 (483)
|||+..+++||++||+||+|||+||
T Consensus 317 vsp~~~~~~eTl~tL~~a~~~~~ik 341 (341)
T cd01372 317 VSPADSNFEETLNTLKYANRARNIK 341 (341)
T ss_pred eCCChhhHHHHHHHHHHHHHhccCC
Confidence 9999999999999999999999986
No 17
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=100.00 E-value=2.9e-80 Score=629.21 Aligned_cols=312 Identities=38% Similarity=0.570 Sum_probs=287.6
Q ss_pred CeEEEEEeCCCCccccccCCCceEEEecCC-----ceEEEeCCC--CcceeEeecEEecCCCchHHHHHHHHHHHHHHhh
Q 047385 3 NITVCARFRPLSSKERSNHGDSVCIHGIDN-----ESFIFKDDK--EENFKFGFDRVFYEKSEQAEVFEFLALPIIRDAF 75 (483)
Q Consensus 3 ~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~-----~~~~~~~~~--~~~~~F~FD~Vf~~~~~Q~~vf~~~~~plv~~~l 75 (483)
+|+|+|||||+.+.|.. ...|+...+. ..+.+.++. ...+.|.||+||+++++|++||+.++.|+|+.++
T Consensus 1 ~i~V~vRvRP~~~~e~~---~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~ 77 (319)
T cd01376 1 NVRVVVRVRPFLDCEED---SSSCVRGIDSDQGQAKSVEIENPRNRGETKKYQFDAFYGTECTQEDIFSREVKPIVPHLL 77 (319)
T ss_pred CcEEEEEeCcCCccccC---CCceEEEeCCCCCcceEEEEeCCCCCCCccEEecCeEECCCCCHHHHHHHHHHHHHHHHh
Confidence 69999999999998842 3567766555 456666553 3568999999999999999999999999999999
Q ss_pred cCcceEEEeeCCCCCCccceecCCCCCCccccccCchhhhHHHHHHhhhcCCCCcEEEEEEeEEEEecceeecccCCCCC
Q 047385 76 NGMNGTVITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTVDELFDCMKSSDASVKFTIKLSMVEIYMEKVRDLFDLSRD 155 (483)
Q Consensus 76 ~G~n~ti~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyne~v~DLL~~~~~ 155 (483)
+|+|+||||||||||||||||+|+. .++|||||++++||+.++... ..+.|++||+|||||.|+|||++...
T Consensus 78 ~G~n~~i~ayG~tgSGKTyTm~G~~------~~~Glipr~~~~Lf~~~~~~~--~~~~v~~S~~EIy~e~v~DLL~~~~~ 149 (319)
T cd01376 78 SGQNATVFAYGSTGAGKTHTMLGDP------NEPGLIPRTLSDLLRMGRKQA--WTGAFSMSYYEIYNEKVYDLLEPAKK 149 (319)
T ss_pred CCCceEEEEECCCCCCCcEEEeCCc------CccchHHHHHHHHHHHHhhcc--ccceEEEEEEEEECCEeeEccCCCCC
Confidence 9999999999999999999999954 478999999999999887653 68999999999999999999999888
Q ss_pred cceeeeccCCceEecCcEEEEecCHHHHHHHHHhhhhccCcccccCCCCCCCceEEEEEEEEEeecccceeEeeeeeeee
Q 047385 156 NIQIKESRVQGILLSGVTEIYVFNSAEALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQELTKEKRVKAGKLLLVD 235 (483)
Q Consensus 156 ~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~skL~~VD 235 (483)
.+++++++.+++++.|++++.|.|++|+++++..|.++|.+++|.+|..|||||+||+|++.+... .....|+|+|||
T Consensus 150 ~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~--~~~~~s~l~~VD 227 (319)
T cd01376 150 ELPIREDKDGNILIVGLTSKPIKSMAEFEEAYIPASKNRTVAATKLNDNSSRSHAVLRIKVTQPAS--NIQLEGKLNLID 227 (319)
T ss_pred CceEEEcCCCCEEeeCCEEEEeCCHHHHHHHHHHHHhhhccccCcCCCccCCCeEEEEEEEEEECC--CceEEEEEEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999988743 346789999999
Q ss_pred CCCCccccccCCchhhHHHHHHhhhhHHHHHHHHHHhccCCCCCCCCccCCCcccchhhhhccCCCcceeeeEeeCCCCC
Q 047385 236 LAGSEKAEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSPGKAFHIPYRDSKLTRILQDALGGNSRTALLCCCSPSTS 315 (483)
Q Consensus 236 LAGsEr~~~t~~~g~~~~E~~~IN~SL~aL~~vI~aL~~~~~~~~~~iPyRdSkLT~lLqdsLgGns~t~mI~~isp~~~ 315 (483)
|||||+..+++..|.+++|+..||+||++|++||.+|+. +..||||||||||+||+|+|||||+|+||+||||...
T Consensus 228 LAGsE~~~~~~~~g~~~~e~~~iN~Sl~~L~~vi~aL~~----~~~~ipyr~S~LT~lL~~~L~g~s~t~~i~~vsp~~~ 303 (319)
T cd01376 228 LAGSEDNRRTGNEGIRLKESAAINSSLFVLSKVVDALNK----GLPRIPYRESKLTRLLQDSLGGGSRCIMVANIAPERS 303 (319)
T ss_pred CCCCCcccccCCccchhhhhhhhhhhHHHHHHHHHHHhc----CCCcCCCccCHHHHHHHHhcCCCccEEEEEEeCCchh
Confidence 999999999999999999999999999999999999987 3579999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhc
Q 047385 316 NSAESLSTLRFGTRAK 331 (483)
Q Consensus 316 ~~~ETlsTL~fa~rak 331 (483)
+++||++||+||+|||
T Consensus 304 ~~~eTl~TL~fa~r~~ 319 (319)
T cd01376 304 FYQDTLSTLNFASRSK 319 (319)
T ss_pred hHHHHHHHHHHHHhhC
Confidence 9999999999999986
No 18
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=100.00 E-value=5.7e-80 Score=627.76 Aligned_cols=317 Identities=43% Similarity=0.706 Sum_probs=290.5
Q ss_pred CeEEEEEeCCCCccccccCCCceEEEecCCc-eEEEeCCCCcceeEeecEEecCCCchHHHHHHHHHHHHHHhhcCcceE
Q 047385 3 NITVCARFRPLSSKERSNHGDSVCIHGIDNE-SFIFKDDKEENFKFGFDRVFYEKSEQAEVFEFLALPIIRDAFNGMNGT 81 (483)
Q Consensus 3 ~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~t 81 (483)
+|+|+||+||++..|.. +.. |+..++++ ++.+.++ .....|.||+||+++++|++||+.++.|+|+++++|+|+|
T Consensus 1 ~V~V~vRvRP~~~~e~~--~~~-~~~~~~~~~~v~~~~~-~~~~~f~fd~vf~~~~~q~~vy~~~~~p~v~~~l~G~n~~ 76 (321)
T cd01374 1 KIKVSVRVRPLNPRESD--NEQ-VAWSIDNDNTISLEES-TPGQSFTFDRVFGGESTNREVYERIAKPVVRSALEGYNGT 76 (321)
T ss_pred CeEEEEEcCcCCccccc--CCc-ceEEECCCCEEEEcCC-CCCeEEecCeEECCCCCHHHHHHHHHHHHHHHHHCCCcee
Confidence 69999999999999873 223 44444444 5555543 5679999999999999999999999999999999999999
Q ss_pred EEeeCCCCCCccceecCCCCCCccccccCchhhhHHHHHHhhhcCCCCcEEEEEEeEEEEecceeecccCCCCCcceeee
Q 047385 82 VITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTVDELFDCMKSSDASVKFTIKLSMVEIYMEKVRDLFDLSRDNIQIKE 161 (483)
Q Consensus 82 i~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyne~v~DLL~~~~~~l~i~e 161 (483)
|||||+|||||||||+|+. .++|||||++++||+.+.... ...|.|++||+|||||+|+|||++....+++++
T Consensus 77 i~ayG~tgSGKT~T~~G~~------~~~Gli~r~~~~lf~~~~~~~-~~~~~v~~S~~Eiy~e~v~DLL~~~~~~l~i~~ 149 (321)
T cd01374 77 IFAYGQTSSGKTFTMSGDE------QEPGIIPLAVRDIFQRIQDTP-DREFLLRVSYLEIYNEKIKDLLSPSPQELRIRE 149 (321)
T ss_pred EEeecCCCCCCceeccCCC------CCCchHHHHHHHHHHHHhccc-CceEEEEEEEEEEEcCEeEEccCCCCCCceEEE
Confidence 9999999999999999954 568999999999999998763 678999999999999999999999988999999
Q ss_pred ccCCceEecCcEEEEecCHHHHHHHHHhhhhccCcccccCCCCCCCceEEEEEEEEEeeccc---ceeEeeeeeeeeCCC
Q 047385 162 SRVQGILLSGVTEIYVFNSAEALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQELTKE---KRVKAGKLLLVDLAG 238 (483)
Q Consensus 162 ~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~---~~~~~skL~~VDLAG 238 (483)
++.+++++.|++++.|.|++|++++|..|.++|+.++|.+|..|||||+||+|+|.+..... .....|+|+||||||
T Consensus 150 ~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~l~~vDLAG 229 (321)
T cd01374 150 DPNKGVVVAGLTEEIVTSPEHLLQLIARGEKNRHVGETDFNERSSRSHTIFQLTIESRERGDSESGTVRVSTLNLIDLAG 229 (321)
T ss_pred CCCCCEEeCCceEEEeCCHHHHHHHHHHHHhccccccCcCCCccccccEEEEEEEEEEecCCCCCCcEEEEEEEEEECCC
Confidence 99999999999999999999999999999999999999999999999999999999987544 567889999999999
Q ss_pred CccccccCCchhhHHHHHHhhhhHHHHHHHHHHhccCCCCCCCCccCCCcccchhhhhccCCCcceeeeEeeCCCCCCHH
Q 047385 239 SEKAEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSPGKAFHIPYRDSKLTRILQDALGGNSRTALLCCCSPSTSNSA 318 (483)
Q Consensus 239 sEr~~~t~~~g~~~~E~~~IN~SL~aL~~vI~aL~~~~~~~~~~iPyRdSkLT~lLqdsLgGns~t~mI~~isp~~~~~~ 318 (483)
|||..+.+ .+.+++|+..||+||++|++||.+|+.+. +..|||||+||||+||+|+||||++|+||+||||...+++
T Consensus 230 sE~~~~~~-~~~~~~e~~~iN~Sl~~L~~vi~al~~~~--~~~~vpyR~SkLT~lL~~~L~g~s~t~~i~~vsp~~~~~~ 306 (321)
T cd01374 230 SERASQTG-AGERRKEGSFINKSLLTLGTVISKLSEGK--NSGHIPYRDSKLTRILQPSLSGNARTAIICTISPASSHVE 306 (321)
T ss_pred CCccccCC-CCccccccchhhhHHHHHHHHHHHHHhcC--CCCcCCCcCCHHHHHHHHhcCCCceEEEEEEeCCccccHH
Confidence 99999998 89999999999999999999999999743 1579999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccc
Q 047385 319 ESLSTLRFGTRAKHI 333 (483)
Q Consensus 319 ETlsTL~fa~rak~I 333 (483)
||++||+||+||++|
T Consensus 307 eTl~TL~~a~r~~~i 321 (321)
T cd01374 307 ETLNTLKFASRAKKV 321 (321)
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999999986
No 19
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=100.00 E-value=2.5e-78 Score=617.85 Aligned_cols=321 Identities=41% Similarity=0.639 Sum_probs=296.0
Q ss_pred CCeEEEEEeCCCCccccccCCCceEEEecCC--ceEEEeCCCCcceeEeecEEecCCCchHHHHHHHHHHHHHHhhcCcc
Q 047385 2 SNITVCARFRPLSSKERSNHGDSVCIHGIDN--ESFIFKDDKEENFKFGFDRVFYEKSEQAEVFEFLALPIIRDAFNGMN 79 (483)
Q Consensus 2 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n 79 (483)
|+|+|+||+||+...|.. ....++...++ .++.+.++......|.||+||+++++|++||+. +.|+|+++++|+|
T Consensus 2 ~~i~V~vRirP~~~~e~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~f~fD~vf~~~~~q~~v~~~-v~p~v~~~~~G~~ 78 (329)
T cd01366 2 GNIRVFCRVRPLLPSEST--EYSSVISFPDEDGGTIELSKGTGKKKSFSFDRVFDPDASQEDVFEE-VSPLVQSALDGYN 78 (329)
T ss_pred CCEEEEEEcCcCCccccC--CCccEEEEcCCCceEEEEeCCCCCceEEecCEEECCCCCHHHHHHH-HHHHHHHHhCCCc
Confidence 799999999999999863 22334444444 566666554677899999999999999999998 5899999999999
Q ss_pred eEEEeeCCCCCCccceecCCCCCCccccccCchhhhHHHHHHhhhcCCC-CcEEEEEEeEEEEecceeecccCCC---CC
Q 047385 80 GTVITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTVDELFDCMKSSDA-SVKFTIKLSMVEIYMEKVRDLFDLS---RD 155 (483)
Q Consensus 80 ~ti~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~i~~~~~-~~~~~v~vS~~EIyne~v~DLL~~~---~~ 155 (483)
+||||||+|||||||||+|+. .++||+||++++||+.++.... ...|.|.+||+|||||+++|||++. ..
T Consensus 79 ~~i~ayG~tgSGKT~tl~G~~------~~~Gli~r~~~~lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~~~ 152 (329)
T cd01366 79 VCIFAYGQTGSGKTYTMEGPP------ENPGIIPRALEQLFNTAEELKEKGWSYTITASMLEIYNETIRDLLATKPAPKK 152 (329)
T ss_pred eEEEEeCCCCCCCcEEecCCC------CCCCcHHHHHHHHHHHHHhhhccCceEEEEEEEEEEECCEeEECCCCCcCCCC
Confidence 999999999999999999964 5789999999999999987744 6899999999999999999999986 67
Q ss_pred cceeeeccCCceEecCcEEEEecCHHHHHHHHHhhhhccCcccccCCCCCCCceEEEEEEEEEeecccceeEeeeeeeee
Q 047385 156 NIQIKESRVQGILLSGVTEIYVFNSAEALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQELTKEKRVKAGKLLLVD 235 (483)
Q Consensus 156 ~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~skL~~VD 235 (483)
.+.+++++.+++++.|++++.|.|++|+.+++..|.++|.++.|.+|..|||||+||+|+|.+.+........|+|+|||
T Consensus 153 ~l~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~~s~l~~VD 232 (329)
T cd01366 153 KLEIKHDSKGETYVTNLTEVPVSSPEEVTRLLNLGSKNRSVASTNMNEHSSRSHAVFQLKIRGTNLQTGEQTRGKLNLVD 232 (329)
T ss_pred ceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhcccccccccCCCCCccEEEEEEEEEEcCCCCcEEEEEEEEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999987777778899999999
Q ss_pred CCCCccccccCCchhhHHHHHHhhhhHHHHHHHHHHhccCCCCCCCCccCCCcccchhhhhccCCCcceeeeEeeCCCCC
Q 047385 236 LAGSEKAEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSPGKAFHIPYRDSKLTRILQDALGGNSRTALLCCCSPSTS 315 (483)
Q Consensus 236 LAGsEr~~~t~~~g~~~~E~~~IN~SL~aL~~vI~aL~~~~~~~~~~iPyRdSkLT~lLqdsLgGns~t~mI~~isp~~~ 315 (483)
|||||+..+.++.+.+++|+..||+||.+|++||.+|+. +..|||||+||||+||+|+|||+++|+||+||||...
T Consensus 233 LaGsE~~~~~~~~~~~~~e~~~in~Sl~~L~~vl~~l~~----~~~~ipyr~S~LT~lL~~~l~g~~~t~~i~~vsp~~~ 308 (329)
T cd01366 233 LAGSERLKKSGATGDRLKEAQAINKSLSALGDVISALRS----KDSHVPYRNSKLTYLLQDSLGGNSKTLMFVNISPLES 308 (329)
T ss_pred CCCCcccccccccchhhHhHhhhhhHHHHHHHHHHHHhc----CCCcCCCcccHhHHHHHHhcCCCceEEEEEEeCCchh
Confidence 999999999999999999999999999999999999987 4679999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhccccc
Q 047385 316 NSAESLSTLRFGTRAKHIKA 335 (483)
Q Consensus 316 ~~~ETlsTL~fa~rak~I~~ 335 (483)
+++||++||+||+|+++|++
T Consensus 309 ~~~etl~tL~~a~~~~~i~~ 328 (329)
T cd01366 309 NLSETLCSLRFASRVRSVEL 328 (329)
T ss_pred hHHHHHHHHHHHHHhhcccC
Confidence 99999999999999999986
No 20
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=100.00 E-value=1.7e-78 Score=619.76 Aligned_cols=316 Identities=43% Similarity=0.633 Sum_probs=285.3
Q ss_pred CeEEEEEeCCCCccccccCCCceEEEecCCceEEEeCCC----------CcceeEeecEEecCCCchHHHHHHHHHHHHH
Q 047385 3 NITVCARFRPLSSKERSNHGDSVCIHGIDNESFIFKDDK----------EENFKFGFDRVFYEKSEQAEVFEFLALPIIR 72 (483)
Q Consensus 3 ~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~F~FD~Vf~~~~~Q~~vf~~~~~plv~ 72 (483)
.|+|+||+||+...+. ..+....++..+.+..|+ .....|.||+||++ ++|++||+.++.|+|+
T Consensus 1 ~i~V~vRvRP~~~~~~-----~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~f~FD~vf~~-~~q~~vy~~~~~p~v~ 74 (334)
T cd01375 1 TIQVFVRVRPTPTKQG-----SSIKLGPDGKSVSSNLPKDLVRGVVNNQQEDFSFKFDGVFHN-ASQEEVYETVAKPVVD 74 (334)
T ss_pred CeEEEEECCCCCCCCC-----ccEEEcCCCCEEEEecccccccccccCCcCceEEEcCcccCC-CCHHHHHHHHHHHHHH
Confidence 4899999999998543 224445565665555443 24568999999999 9999999999999999
Q ss_pred HhhcCcceEEEeeCCCCCCccceecCCCCCCccccccCchhhhHHHHHHhhhcCCCCcEEEEEEeEEEEecceeecccCC
Q 047385 73 DAFNGMNGTVITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTVDELFDCMKSSDASVKFTIKLSMVEIYMEKVRDLFDL 152 (483)
Q Consensus 73 ~~l~G~n~ti~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyne~v~DLL~~ 152 (483)
++++|+|+||||||+|||||||||+|+.. +..++|||||++++||+.++.. ....|.|++||+|||||+++|||++
T Consensus 75 ~~~~G~n~~i~ayG~tgSGKTyTm~G~~~---~~~~~Glipr~~~~lf~~~~~~-~~~~~~v~~S~~Eiy~e~v~DLL~~ 150 (334)
T cd01375 75 SALDGYNGTIFAYGQTGAGKTFTMTGGTE---SYKDRGLIPRALEQVFREVAMR-ATKTYTVHVSYLEIYNEQLYDLLGD 150 (334)
T ss_pred HHhCCCccceeeecCCCCCCeEEccCCCC---cccCCchHHHHHHHHHHHHHhc-cCcceEEEEEEEEEECCEeecCCCC
Confidence 99999999999999999999999999754 2357899999999999999876 4668999999999999999999988
Q ss_pred CC------CcceeeeccCCceEecCcEEEEecCHHHHHHHHHhhhhccCcccccCCCCCCCceEEEEEEEEEe--ecccc
Q 047385 153 SR------DNIQIKESRVQGILLSGVTEIYVFNSAEALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQE--LTKEK 224 (483)
Q Consensus 153 ~~------~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~--~~~~~ 224 (483)
.. +.+.+++++.++++|.|++++.|.+++|++.++..|..+|.+++|.+|..|||||+||+|+|.+. .....
T Consensus 151 ~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~~~~g~~~R~~~~t~~n~~sSRSH~i~~l~v~~~~~~~~~~ 230 (334)
T cd01375 151 TPEALESLPAVTILEDSEQNIHVKGLSLHSATTEEEALNLLFLGETNRTIAETSMNQASSRSHCIFTIHLESRSREAGSE 230 (334)
T ss_pred CccccccCCceEEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccCcCcCCcCcCeEEEEEEEEEEecCCCCC
Confidence 74 57899999999999999999999999999999999999999999999999999999999999987 33455
Q ss_pred eeEeeeeeeeeCCCCccccccCCchhhHHHHHHhhhhHHHHHHHHHHhccCCCCCCCCccCCCcccchhhhhccCCCcce
Q 047385 225 RVKAGKLLLVDLAGSEKAEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSPGKAFHIPYRDSKLTRILQDALGGNSRT 304 (483)
Q Consensus 225 ~~~~skL~~VDLAGsEr~~~t~~~g~~~~E~~~IN~SL~aL~~vI~aL~~~~~~~~~~iPyRdSkLT~lLqdsLgGns~t 304 (483)
....|+|+|||||||||..++++.+..++|+..||+||++|++||.+|+.+ ...||||||||||+||+|+|||||+|
T Consensus 231 ~~~~s~l~~VDLAGsEr~~~~~~~~~~~~e~~~iN~SL~~L~~vi~~l~~~---~~~~ipyRdSkLT~lL~d~Lgg~~~t 307 (334)
T cd01375 231 VVRLSKLNLVDLAGSERVSKTGVSGQVLKEAKYINKSLSFLEQVINALSEK---ARTHVPYRNSKLTHVLRDSLGGNCKT 307 (334)
T ss_pred ceEEEEEEEEECCCCCccccccCchhhhhhhhhhhhhHHHHHHHHHHHHhC---CCCCCCCcccHHHHHHHHhcCCCceE
Confidence 677899999999999999999999999999999999999999999999974 24799999999999999999999999
Q ss_pred eeeEeeCCCCCCHHHHHHHHHHHHHhc
Q 047385 305 ALLCCCSPSTSNSAESLSTLRFGTRAK 331 (483)
Q Consensus 305 ~mI~~isp~~~~~~ETlsTL~fa~rak 331 (483)
+||+||||+..+++||++||+||+|++
T Consensus 308 ~~I~~vsp~~~~~~eTl~TL~fa~r~~ 334 (334)
T cd01375 308 VMLATIWVEPSNLDETLSTLRFAQRVA 334 (334)
T ss_pred EEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 999999999999999999999999985
No 21
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=100.00 E-value=3.7e-76 Score=603.23 Aligned_cols=329 Identities=46% Similarity=0.699 Sum_probs=302.2
Q ss_pred CeEEEEEeCCCCccccccCCCceEEEecCCc--eEEEeCC--CCcceeEeecEEecCCCchHHHHHHHHHHHHHHhhcCc
Q 047385 3 NITVCARFRPLSSKERSNHGDSVCIHGIDNE--SFIFKDD--KEENFKFGFDRVFYEKSEQAEVFEFLALPIIRDAFNGM 78 (483)
Q Consensus 3 ~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~F~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~ 78 (483)
+|+|+||+||+...|...+ ...|+...++. .+.+.++ ......|.||+||+++++|++||+.++.|+|+.+++|+
T Consensus 1 ~v~v~vRvrP~~~~e~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~f~fD~vf~~~~~q~~v~~~~~~p~v~~~~~G~ 79 (335)
T smart00129 1 NIRVVVRVRPLNKREKSRK-SPSVVPFDDKDGKTLNVNSPKNRKEEKKFTFDKVFGATASQEDVFEETAAPLVDSVLEGY 79 (335)
T ss_pred CcEEEEEcCcCCccchhcC-CceEEEEcCCCCCEEEEeCCCCCCCCeEEecCEEECCCCChHHHHHHHHHHHHHHHhcCC
Confidence 6899999999999987643 34566555443 5555543 24568999999999999999999999999999999999
Q ss_pred ceEEEeeCCCCCCccceecCCCCCCccccccCchhhhHHHHHHhhhcCCCCcEEEEEEeEEEEecceeecccCCCCCcce
Q 047385 79 NGTVITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTVDELFDCMKSSDASVKFTIKLSMVEIYMEKVRDLFDLSRDNIQ 158 (483)
Q Consensus 79 n~ti~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyne~v~DLL~~~~~~l~ 158 (483)
|+|||+||+|||||||||+|+. +++||+||++++||+.+........|.|++||+|||+|.++|||++.+..+.
T Consensus 80 ~~~i~~yG~tgSGKT~tl~G~~------~~~Gli~~~~~~Lf~~~~~~~~~~~~~v~~S~~ei~~e~v~DLL~~~~~~l~ 153 (335)
T smart00129 80 NATIFAYGQTGSGKTYTMSGTP------DSPGIIPRALKDLFEKIDKLEEGWQFQVKVSYLEIYNEKIRDLLNPSPKKLE 153 (335)
T ss_pred ceeEEEeCCCCCCCceEecCCC------CCCCHHHHHHHHHHHHhhhcccCceEEEEEEEEEEECCEEEECcCCCCCCcE
Confidence 9999999999999999999953 5689999999999999988766789999999999999999999999989999
Q ss_pred eeeccCCceEecCcEEEEecCHHHHHHHHHhhhhccCcccccCCCCCCCceEEEEEEEEEe--ecccceeEeeeeeeeeC
Q 047385 159 IKESRVQGILLSGVTEIYVFNSAEALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQE--LTKEKRVKAGKLLLVDL 236 (483)
Q Consensus 159 i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~--~~~~~~~~~skL~~VDL 236 (483)
+++++.+++++.|++++.|.|++|+++++..|.++|.+++|.+|..|||||+||+|+|.+. +........|+|+||||
T Consensus 154 i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRsH~i~~l~v~~~~~~~~~~~~~~s~l~~VDL 233 (335)
T smart00129 154 IREDKKGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVESKIKNSSSGSGKASKLNLVDL 233 (335)
T ss_pred EEECCCCCEEecCCEEEEeCCHHHHHHHHHHHHhccccccCCCCCCCCcceEEEEEEEEEEecCCCCCCEEEEEEEEEEC
Confidence 9999999999999999999999999999999999999999999999999999999999976 44566778999999999
Q ss_pred CCCccccccCCchhhHHHHHHhhhhHHHHHHHHHHhccCCCCCCCCccCCCcccchhhhhccCCCcceeeeEeeCCCCCC
Q 047385 237 AGSEKAEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSPGKAFHIPYRDSKLTRILQDALGGNSRTALLCCCSPSTSN 316 (483)
Q Consensus 237 AGsEr~~~t~~~g~~~~E~~~IN~SL~aL~~vI~aL~~~~~~~~~~iPyRdSkLT~lLqdsLgGns~t~mI~~isp~~~~ 316 (483)
||+|+..+.++.+.+++|+..||+||.+|++||.+|++. .+..|||||+|+||+||+++|||+++|+||+||||...+
T Consensus 234 aGse~~~~~~~~~~~~~e~~~in~sl~~L~~~l~~l~~~--~~~~~ip~r~S~LT~lL~~~L~g~~~~~~i~~vsp~~~~ 311 (335)
T smart00129 234 AGSERASKTGAEGDRLKEAGNINKSLSALGNVINALADG--QKSRHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSLSN 311 (335)
T ss_pred CCCCccccccChhHHHHhhchhhhHHHHHHHHHHHHHhc--CCCCCCCCcCcHhHHHHHHHcCCCCeEEEEEEcCCCccc
Confidence 999999999999999999999999999999999999874 256799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccccCCccc
Q 047385 317 SAESLSTLRFGTRAKHIKASPHAH 340 (483)
Q Consensus 317 ~~ETlsTL~fa~rak~I~~~~~~n 340 (483)
++||++||+||+++++|++.|++|
T Consensus 312 ~~eTl~tL~~a~~~~~i~~~p~~~ 335 (335)
T smart00129 312 LEETLSTLRFASRAKEIKNKAIVN 335 (335)
T ss_pred hHHHHHHHHHHHHHhhcccCCCcC
Confidence 999999999999999999999875
No 22
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=100.00 E-value=2e-77 Score=650.02 Aligned_cols=326 Identities=38% Similarity=0.580 Sum_probs=296.1
Q ss_pred CCeEEEEEeCCCCccccccCCCceEEEecCC-ceEEEeCCCCcce----eEeecEEecCCCchHHHHHHHHHHHHHHhhc
Q 047385 2 SNITVCARFRPLSSKERSNHGDSVCIHGIDN-ESFIFKDDKEENF----KFGFDRVFYEKSEQAEVFEFLALPIIRDAFN 76 (483)
Q Consensus 2 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----~F~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~ 76 (483)
|||||+|||||+.+.|.... .. -+...++ ..+.+..+....+ .|.||+||+|.++|++||.+ +.|+|.++++
T Consensus 314 GnIRV~CRvRP~~~~e~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~f~fdkVf~p~~sQ~~VF~e-~~~lv~S~lD 390 (670)
T KOG0239|consen 314 GNIRVFCRVRPLLPSEKQRL-QS-KVIDTEEQGEVQVDSPDKGDKLEPQSFKFDKVFGPLASQDDVFEE-VSPLVQSALD 390 (670)
T ss_pred cCceEEEEecCCCccccccc-cc-cccccCCcceeEeecCCCCCCCccccceeeeecCCcccHHHHHHH-HHHHHHHHhc
Confidence 89999999999999987531 11 1222222 2344444433332 49999999999999999999 6699999999
Q ss_pred CcceEEEeeCCCCCCccceecCCCCCCccccccCchhhhHHHHHHhhhcCCCCcEEEEEEeEEEEecceeecccCCC--C
Q 047385 77 GMNGTVITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTVDELFDCMKSSDASVKFTIKLSMVEIYMEKVRDLFDLS--R 154 (483)
Q Consensus 77 G~n~ti~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyne~v~DLL~~~--~ 154 (483)
|||+||||||||||||||||.|+ .++++|||||+++.||..+......|.|.+.+||+|||||.|+|||++. .
T Consensus 391 GYnVCIFAYGQTGSGKTyTM~G~-----~~~~~Giipral~~lF~~~~~~~~g~~y~~~~s~~EIYNe~i~DlL~~~~~~ 465 (670)
T KOG0239|consen 391 GYNVCIFAYGQTGSGKTYTMSGP-----TPEDPGIIPRALEKLFRTITSLKSGWKYDKTVSMLEIYNEAIRDLLSDESYV 465 (670)
T ss_pred CcceeEEEecccCCCccccccCC-----CcccCCccHHHHHHHHHHHHhhccCceEEeeeehhHHHHHHHHHhccccccc
Confidence 99999999999999999999996 3467999999999999999988779999999999999999999999887 4
Q ss_pred CcceeeeccCCceEecCcEEEEecCHHHHHHHHHhhhhccCcccccCCCCCCCceEEEEEEEEEeecccceeEeeeeeee
Q 047385 155 DNIQIKESRVQGILLSGVTEIYVFNSAEALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQELTKEKRVKAGKLLLV 234 (483)
Q Consensus 155 ~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~skL~~V 234 (483)
..+.|+.++.++.+|.+++.+.|.+.+++..+++.|..+|++++|.+|..|||||+||+++|...+...+....+.|+||
T Consensus 466 ~k~~I~~~~~~~~~V~~~t~~~V~s~~~v~~ll~~g~~nRsv~~T~~Ne~SSRSH~v~~v~v~g~~~~t~~~~~g~l~LV 545 (670)
T KOG0239|consen 466 GKLEIVDDAEGNLMVPLLTVIKVGSSEEVDILLEIGLSNRSVASTASNERSSRSHLVFRVRIRGINELTGIRVTGVLNLV 545 (670)
T ss_pred cceeEEEcCCCceecccceEEecCCHHHHHHHHHHhhccccccccccchhhhccceEEEEEEeccccCcccccccceeEe
Confidence 68999999999999999999999999999999999999999999999999999999999999998888888899999999
Q ss_pred eCCCCccccccCCchhhHHHHHHhhhhHHHHHHHHHHhccCCCCCCCCccCCCcccchhhhhccCCCcceeeeEeeCCCC
Q 047385 235 DLAGSEKAEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSPGKAFHIPYRDSKLTRILQDALGGNSRTALLCCCSPST 314 (483)
Q Consensus 235 DLAGsEr~~~t~~~g~~~~E~~~IN~SL~aL~~vI~aL~~~~~~~~~~iPyRdSkLT~lLqdsLgGns~t~mI~~isp~~ 314 (483)
|||||||+++++++|+|++|+.+||+||++||+||.||+. +..||||||||||+||||+|||++||+|+++|||..
T Consensus 546 DLAGSER~~~s~~tG~RlkE~Q~INkSLS~LgdVi~AL~~----k~~HiPyRNSKLT~lLq~sLGG~sKTLmfv~isP~~ 621 (670)
T KOG0239|consen 546 DLAGSERVSKSGVTGERLKEAQNINKSLSALGDVISALAS----KRSHIPYRNSKLTQLLQDSLGGDSKTLMFVNISPAA 621 (670)
T ss_pred ecccCcccCcCCCchhhhHHHHHhchhhhhhHHHHHHHhh----cCCCCcccccchHHHhHhhhCCccceeeEEEeCccH
Confidence 9999999999999999999999999999999999999997 678999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhcccccCCcc
Q 047385 315 SNSAESLSTLRFGTRAKHIKASPHA 339 (483)
Q Consensus 315 ~~~~ETlsTL~fa~rak~I~~~~~~ 339 (483)
+++.||+++|+||.|++.+...+-.
T Consensus 622 ~~~~Etl~sL~FA~rv~~~~lG~a~ 646 (670)
T KOG0239|consen 622 AALFETLCSLRFATRVRSVELGSAR 646 (670)
T ss_pred HHHhhhhhccchHHHhhceeccccc
Confidence 9999999999999999999876654
No 23
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=100.00 E-value=1.3e-74 Score=590.11 Aligned_cols=319 Identities=47% Similarity=0.729 Sum_probs=294.9
Q ss_pred CeEEEEEeCCCCccccccCCCceEEEecCCceEEEeCCC----CcceeEeecEEecCCCchHHHHHHHHHHHHHHhhcCc
Q 047385 3 NITVCARFRPLSSKERSNHGDSVCIHGIDNESFIFKDDK----EENFKFGFDRVFYEKSEQAEVFEFLALPIIRDAFNGM 78 (483)
Q Consensus 3 ~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~F~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~ 78 (483)
+|+|+||+||+...|.. +...|+...+++++.+.+++ .....|.||+||+++++|++||+.++.|+|+++++|+
T Consensus 1 ~i~V~vRvrP~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~v~~~~~~~~v~~~~~G~ 78 (328)
T cd00106 1 NIRVVVRIRPLNGRESK--SEESCITVDDNKTVTLTPPKDGRKAGPKSFTFDHVFDPNSTQEDVYETTAKPLVESVLEGY 78 (328)
T ss_pred CeEEEEEcCCCCccccc--CCCcEEEECCCCEEEEecCccccCcCceEEECCeEEcCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 68999999999988732 34567776666888887764 3568999999999999999999999999999999999
Q ss_pred ceEEEeeCCCCCCccceecCCCCCCccccccCchhhhHHHHHHhhhcCCC-CcEEEEEEeEEEEecceeecccCCC--CC
Q 047385 79 NGTVITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTVDELFDCMKSSDA-SVKFTIKLSMVEIYMEKVRDLFDLS--RD 155 (483)
Q Consensus 79 n~ti~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~i~~~~~-~~~~~v~vS~~EIyne~v~DLL~~~--~~ 155 (483)
|+||||||+|||||||||+|+. .++|||||++++||+.+..... ...+.|.+||+|||+|+|+|||++. ..
T Consensus 79 ~~~i~~yG~tgSGKT~tl~G~~------~~~Gli~~~~~~Lf~~~~~~~~~~~~~~v~~S~~Ei~~e~v~DLL~~~~~~~ 152 (328)
T cd00106 79 NGTIFAYGQTGSGKTYTMFGSP------KDPGIIPRALEDLFNLIDERKEKNKSFSVSVSYLEIYNEKVYDLLSPEPPSK 152 (328)
T ss_pred ceeEEEecCCCCCCeEEecCCC------CCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCEeEECCCCCCCCC
Confidence 9999999999999999999954 5789999999999999987643 5789999999999999999999997 88
Q ss_pred cceeeeccCCceEecCcEEEEecCHHHHHHHHHhhhhccCcccccCCCCCCCceEEEEEEEEEeecccce--eEeeeeee
Q 047385 156 NIQIKESRVQGILLSGVTEIYVFNSAEALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQELTKEKR--VKAGKLLL 233 (483)
Q Consensus 156 ~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~--~~~skL~~ 233 (483)
.+.+++++.+++++.|++++.|.|++|+++++..|.++|.++.|.+|..|||||+||+|+|.+....... ...|+|+|
T Consensus 153 ~l~i~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~s~l~~ 232 (328)
T cd00106 153 PLSLREDPKGGVYVKGLTEVEVGSAEDALSLLQKGLKNRTTASTAMNERSSRSHAIFTIHVEQRNTTNDGRSIKSSKLNL 232 (328)
T ss_pred CcEEEEcCCCCEEEeCCEEEEeCCHHHHHHHHHHHHhhcCcccCcCCCCcCcCcEEEEEEEEEEecCCCCccEEEEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999998765554 78999999
Q ss_pred eeCCCCccccccCCchhhHHHHHHhhhhHHHHHHHHHHhccCCCCCCCCccCCCcccchhhhhccCCCcceeeeEeeCCC
Q 047385 234 VDLAGSEKAEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSPGKAFHIPYRDSKLTRILQDALGGNSRTALLCCCSPS 313 (483)
Q Consensus 234 VDLAGsEr~~~t~~~g~~~~E~~~IN~SL~aL~~vI~aL~~~~~~~~~~iPyRdSkLT~lLqdsLgGns~t~mI~~isp~ 313 (483)
|||||+|+..+.+..+.+++|+..||+||.+|++||.+|+.+. +..|||||+||||+||||+|||+++|+||+||||.
T Consensus 233 VDLaGse~~~~~~~~~~~~~e~~~in~sl~~L~~vl~~l~~~~--~~~~ip~r~SkLT~lL~~~l~g~~~t~~I~~vsp~ 310 (328)
T cd00106 233 VDLAGSERAKKTGAEGDRLKEAKNINKSLSALGNVISALSSGQ--KKKHIPYRDSKLTRLLQDSLGGNSKTLMIANISPS 310 (328)
T ss_pred EECCCCCcccccCCchhhhHhHHhhhhhHHHHHHHHHHHHhcC--CCCcCCCcCcHHHHHHHHhcCCCCeEEEEEEeCCc
Confidence 9999999999999999999999999999999999999999742 14799999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhc
Q 047385 314 TSNSAESLSTLRFGTRAK 331 (483)
Q Consensus 314 ~~~~~ETlsTL~fa~rak 331 (483)
..+++||++||+||+|||
T Consensus 311 ~~~~~eTl~tL~~a~r~~ 328 (328)
T cd00106 311 SENYDETLSTLRFASRAK 328 (328)
T ss_pred hhhHHHHHHHHHHHHhcC
Confidence 999999999999999986
No 24
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.9e-74 Score=604.92 Aligned_cols=331 Identities=31% Similarity=0.548 Sum_probs=297.9
Q ss_pred CCeEEEEEeCCCCccccccCCCceEEEecCCceEEEeCCC-----------CcceeEeecEEecCCCchHHHHHHHHHHH
Q 047385 2 SNITVCARFRPLSSKERSNHGDSVCIHGIDNESFIFKDDK-----------EENFKFGFDRVFYEKSEQAEVFEFLALPI 70 (483)
Q Consensus 2 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~F~FD~Vf~~~~~Q~~vf~~~~~pl 70 (483)
..|.|+||+||+.+. .++..|+++++..++++..|. ...+.|.|.+||+|+++|.+||+.++.|+
T Consensus 31 d~v~v~~rvrP~~~~----~~~~g~l~v~n~~tivL~~P~d~~~~~~~n~~q~e~~fsFt~VF~p~~tQ~dvF~~~~~pl 106 (809)
T KOG0247|consen 31 DPVLVVCRVRPLSDA----SEDEGCLRVINEETIVLETPEDSFARRSVNGGQMEKKFSFTKVFGPSVTQADVFDTTVAPL 106 (809)
T ss_pred cchheeEeecCCCCC----ccccceEEEeccceeEeeCcHHHHhhhccCccceeeEeeeeeecCCCccHHHHHHHHhHHH
Confidence 468899999999862 234679999999998887542 13478999999999999999999999999
Q ss_pred HHHhhcCcceEEEeeCCCCCCccceecCCCCCCccccccCchhhhHHHHHHhhhcC------------------------
Q 047385 71 IRDAFNGMNGTVITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTVDELFDCMKSS------------------------ 126 (483)
Q Consensus 71 v~~~l~G~n~ti~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~i~~~------------------------ 126 (483)
|.+++.|.|..+|+||.|||||||||+|++ .++||+||+++.||..|+..
T Consensus 107 V~dlLkgqn~LlFTyGVTgSGKTYTm~G~~------~~~GIlPR~Ld~iF~siq~~~~~k~~~kp~~s~~~e~~~~~~al 180 (809)
T KOG0247|consen 107 VKDLLKGQNSLLFTYGVTGSGKTYTMTGTP------DRPGILPRALDVIFNSIQGRQAKKPVFKPLRSNLFEIKAEEDAL 180 (809)
T ss_pred HHHHHcccceeEEEeeccCCCceEEeecCC------CCCCchHHHHHHHHHHhhceeccCceeccccchHHHHHHHHHHH
Confidence 999999999999999999999999999954 56899999999999988742
Q ss_pred ----------------------------------------CCCcEEEEEEeEEEEecceeecccCCCCC------cceee
Q 047385 127 ----------------------------------------DASVKFTIKLSMVEIYMEKVRDLFDLSRD------NIQIK 160 (483)
Q Consensus 127 ----------------------------------------~~~~~~~v~vS~~EIyne~v~DLL~~~~~------~l~i~ 160 (483)
+.+..|.|+|||+|||||.|||||.+.+. ...++
T Consensus 181 L~lkr~~~~nd~~~ts~~~~~~~~e~~e~~~~~e~~~~~l~~d~~ysV~VSf~EIYN~~iYDLLe~~s~q~~~~~~~ll~ 260 (809)
T KOG0247|consen 181 LQLKREAMLNDRKSTSKAHRQSTPEYAEHIHVIEQPALELDEDIVYSVFVSFVEIYNNYIYDLLEDASFQGKLQKLKLLR 260 (809)
T ss_pred HhhhhhhccccccCcchhhccccHHHHhhcchhcccccccCcCcEEEEEeeHHHHHHHHHHHhhccccccchhhhhhhhh
Confidence 13567999999999999999999976532 25678
Q ss_pred eccCCceEecCcEEEEecCHHHHHHHHHhhhhccCcccccCCCCCCCceEEEEEEEEEeecc--cceeEeeeeeeeeCCC
Q 047385 161 ESRVQGILLSGVTEIYVFNSAEALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQELTK--EKRVKAGKLLLVDLAG 238 (483)
Q Consensus 161 e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~--~~~~~~skL~~VDLAG 238 (483)
+|.++.+||.|+++|.|.|.+||+++|+.|.++|+.++|..|..|||||+||+|.+.+.... ......|.|.||||||
T Consensus 261 ~d~~~~~~Vkgl~~V~VssseEA~~l~~lGqk~r~~asT~lN~~SSRSHsVFtIkl~q~~~~~~s~~i~vSqlsLvDLAG 340 (809)
T KOG0247|consen 261 EDTNGNMYVKGLTEVEVSSSEEALELFQLGQKRRRVASTKLNANSSRSHSVFTIKLVQAPRSQDSNQITVSQLSLVDLAG 340 (809)
T ss_pred hccCCCeeeccccEEEeccHHHHHHHHHHHHhhhhhhheeccccccccceeEEEEeeecccccccCceeEEeeeeeeccc
Confidence 99999999999999999999999999999999999999999999999999999999987665 5677899999999999
Q ss_pred CccccccCCchhhHHHHHHhhhhHHHHHHHHHHhccCCC-CCCCCccCCCcccchhhhhccCCCcceeeeEeeCCCCCCH
Q 047385 239 SEKAEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSP-GKAFHIPYRDSKLTRILQDALGGNSRTALLCCCSPSTSNS 317 (483)
Q Consensus 239 sEr~~~t~~~g~~~~E~~~IN~SL~aL~~vI~aL~~~~~-~~~~~iPyRdSkLT~lLqdsLgGns~t~mI~~isp~~~~~ 317 (483)
|||..+|++.|.|++|+++||+||++||+||.+|...+. +...+|||||||||++++.+|.|.++.+||.||+|.+.+|
T Consensus 341 SERt~rtq~sG~RLrEagNINtSLmTLg~Cie~LR~nqk~ks~~~VPyRdSKLThlfq~~f~G~gki~MIV~vnp~~e~Y 420 (809)
T KOG0247|consen 341 SERTNRTQNSGERLREAGNINTSLMTLRRCIDVLRENQKSKSQKIVPYRDSKLTHLFKNYFDGKGKIRMIVCVNPKAEDY 420 (809)
T ss_pred chhcccccchhHHHHhhccccHHHHHHHHHHHHHHHHhhhhccccCcchHHHHHHHHHHhcCCCCcEEEEEecCCchhhH
Confidence 999999999999999999999999999999999987543 2447899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccccCCccccc
Q 047385 318 AESLSTLRFGTRAKHIKASPHAHCS 342 (483)
Q Consensus 318 ~ETlsTL~fa~rak~I~~~~~~n~~ 342 (483)
+|+++.|+||..|+.|.+.+-++..
T Consensus 421 dEnl~vlkFaeiaq~v~v~~~~~~~ 445 (809)
T KOG0247|consen 421 DENLNVLKFAEIAQEVEVARPVIKK 445 (809)
T ss_pred HHHHHHHHHHHhcccccccCccccc
Confidence 9999999999999999887666443
No 25
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=100.00 E-value=1.5e-74 Score=591.20 Aligned_cols=318 Identities=43% Similarity=0.707 Sum_probs=278.8
Q ss_pred EeCCCCccccccCCCceEEEecCC--ceEEEe---CCCCcceeEeecEEecCCCchHHHHHHHHHHHHHHhhcCcceEEE
Q 047385 9 RFRPLSSKERSNHGDSVCIHGIDN--ESFIFK---DDKEENFKFGFDRVFYEKSEQAEVFEFLALPIIRDAFNGMNGTVI 83 (483)
Q Consensus 9 RvRP~~~~E~~~~~~~~~~~~~~~--~~~~~~---~~~~~~~~F~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~ 83 (483)
||||++..|...+. ..++...+. ...... ........|.||+||+++++|++||+.++.|+|+++++|+|+|||
T Consensus 1 RvRP~~~~e~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~ 79 (335)
T PF00225_consen 1 RVRPLNESEKESSA-ESIVSVDNQDSNQNKQSVNSNNSQKEKSFRFDRVFDEDATQEDVYEEVVSPLVDSVLDGYNATIF 79 (335)
T ss_dssp EEES-CHHHHHTTT-EBCEEEETTETEEEEEETTEEETTEEEEEEESEEEETTSTHHHHHHHHTHHHHHHHHTT-EEEEE
T ss_pred CcCCCCHHHHhCCC-cEEEEecCCccccccccccccCCCCceEEEcCeEECCCCCHHHHHHHHHHHHHHHhhcCCceEEE
Confidence 99999999987543 333322211 111111 112456899999999999999999999999999999999999999
Q ss_pred eeCCCCCCccceecCCCCCCccccccCchhhhHHHHHHhhhcCCCC--cEEEEEEeEEEEecceeecccCCC----CCcc
Q 047385 84 TYGQTGAGKTFSMEGPSILACDEQKKGLLQRTVDELFDCMKSSDAS--VKFTIKLSMVEIYMEKVRDLFDLS----RDNI 157 (483)
Q Consensus 84 ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~i~~~~~~--~~~~v~vS~~EIyne~v~DLL~~~----~~~l 157 (483)
|||+|||||||||+|+. ...++||+||++++||+.+...... ..|.|++||+|||||.|+|||++. ...+
T Consensus 80 ayG~tgSGKT~Tm~G~~----~~~~~Gli~~~~~~lf~~~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~l 155 (335)
T PF00225_consen 80 AYGQTGSGKTYTMFGSN----DPSEPGLIPRALRDLFSQIEERKEKSGYEFSVSVSYLEIYNEKVYDLLSPNNSKSRKPL 155 (335)
T ss_dssp EEESTTSSHHHHHTBST----STTTBSHHHHHHHHHHHHHHHHTTTSTEEEEEEEEEEEEETTEEEETTSTTSSSTTSEB
T ss_pred eeccccccccccccccc----cccccchhhhHHHHHhhhhccccccccccccccccchhhhhhhhhhhcCcccccccccc
Confidence 99999999999999961 2467999999999999999886543 789999999999999999999987 3579
Q ss_pred eeeeccCCc-eEecCcEEEEecCHHHHHHHHHhhhhccCcccccCCCCCCCceEEEEEEEEEeecccce----eEeeeee
Q 047385 158 QIKESRVQG-ILLSGVTEIYVFNSAEALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQELTKEKR----VKAGKLL 232 (483)
Q Consensus 158 ~i~e~~~~g-~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~----~~~skL~ 232 (483)
.+++++..| ++|.|++++.|.+++|++++|..|.++|.++.|.+|..|||||+||+|+|.+....... ...|+|+
T Consensus 156 ~i~~~~~~g~~~i~~l~~~~v~s~~~~~~~l~~~~~~R~~~~t~~n~~sSRSH~i~~i~v~~~~~~~~~~~~~~~~s~l~ 235 (335)
T PF00225_consen 156 KIREDSNKGSVYIKGLTEVEVKSAEEALQLLKKGQKNRRTASTKMNARSSRSHAIFTIHVEQKDRDPSDDEESVKHSRLT 235 (335)
T ss_dssp EEEEETTTEEEEETTSEEEEESSHHHHHHHHHHHHHHHTCTSSSCTHHGGGSEEEEEEEEEEEETTTTTEEEEEEEEEEE
T ss_pred ceeeccccccceeeccccccccccccccccccchhhccccccccccccccccccccccccccccccccccccceeeccee
Confidence 999999876 99999999999999999999999999999999999999999999999999998765433 5889999
Q ss_pred eeeCCCCccccccCC-chhhHHHHHHhhhhHHHHHHHHHHhccCCCCCCCCccCCCcccchhhhhccCCCcceeeeEeeC
Q 047385 233 LVDLAGSEKAEKTGA-EGKVLEEAKTINKSLSALGNVISALTCGSPGKAFHIPYRDSKLTRILQDALGGNSRTALLCCCS 311 (483)
Q Consensus 233 ~VDLAGsEr~~~t~~-~g~~~~E~~~IN~SL~aL~~vI~aL~~~~~~~~~~iPyRdSkLT~lLqdsLgGns~t~mI~~is 311 (483)
||||||+|+..+.++ .+.+++|+..||+||.+|++||.+|+.+ .+..|||||+||||+||+|+|||||+|+||+|||
T Consensus 236 ~vDLaGsE~~~~~~~~~~~~~~e~~~in~Sl~~L~~vi~~L~~~--~~~~~vpyr~SkLT~lL~d~l~g~s~t~~I~~vs 313 (335)
T PF00225_consen 236 FVDLAGSERLKKSGASDGQRLKESSNINKSLSALGNVIRALAQG--SKQSHVPYRDSKLTRLLKDSLGGNSKTILIVCVS 313 (335)
T ss_dssp EEEEEESTGGCGCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHCT--TSTSSSCGGGSHHHHHTGGGTSSSSEEEEEEEE-
T ss_pred eeecccccccccccccccccccccceecchhhhhhhhHhhhhcc--ccchhhhhhcccccceecccccccccceeEEEcC
Confidence 999999999999886 4888999999999999999999999984 3478999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhccc
Q 047385 312 PSTSNSAESLSTLRFGTRAKHI 333 (483)
Q Consensus 312 p~~~~~~ETlsTL~fa~rak~I 333 (483)
|...+++||++||+||+++|+|
T Consensus 314 p~~~~~~eTl~tL~fa~~~~~I 335 (335)
T PF00225_consen 314 PSSEDYEETLSTLRFASRAREI 335 (335)
T ss_dssp SBGGGHHHHHHHHHHHHHHTTE
T ss_pred CccccHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999987
No 26
>KOG0246 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2e-73 Score=583.89 Aligned_cols=327 Identities=33% Similarity=0.513 Sum_probs=293.5
Q ss_pred CeEEEEEeCCCCccccccCCCceEEEecCCceEEEeCCCC--------cceeEeecEEecCCCchHHHHHHHHHHHHHHh
Q 047385 3 NITVCARFRPLSSKERSNHGDSVCIHGIDNESFIFKDDKE--------ENFKFGFDRVFYEKSEQAEVFEFLALPIIRDA 74 (483)
Q Consensus 3 ~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~F~FD~Vf~~~~~Q~~vf~~~~~plv~~~ 74 (483)
+|.||||-||++.+|.... ....+.++..+.+++..|+. ++..|.||++||+.++++.||..+++|||..+
T Consensus 209 rI~VCVRKRPLnkkE~~~k-eiDvisvps~~~l~vHEpk~kVDLtkYlEn~~F~FDyaFDe~~sNe~VYrfTa~PlV~~I 287 (676)
T KOG0246|consen 209 RICVCVRKRPLNKKELTKK-EIDVISVPSKNVLVVHEPKLKVDLTKYLENQKFRFDYAFDESASNELVYRFTAKPLVKTI 287 (676)
T ss_pred eEEEEeecCCCCchhcccc-ccceEeccccceEEeeccccccchHHHHhhceEEEeeecccccchHHHHHHhhhHHHHHH
Confidence 6899999999999998743 34455556677777766553 46899999999999999999999999999999
Q ss_pred hcCcceEEEeeCCCCCCccceecCCCCCCccccccCchhhhHHHHHHhhhcC-CCCcEEEEEEeEEEEecceeecccCCC
Q 047385 75 FNGMNGTVITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTVDELFDCMKSS-DASVKFTIKLSMVEIYMEKVRDLFDLS 153 (483)
Q Consensus 75 l~G~n~ti~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~i~~~-~~~~~~~v~vS~~EIyne~v~DLL~~~ 153 (483)
|+|.-+|+||||||||||||||.|...........||..++.+++|..+... -....+.|++||||||+.++||||+.
T Consensus 288 F~~G~ATCFAYGQTGSGKT~TMggdfsgk~q~~s~giya~aa~Dvf~~L~~p~Y~~~~l~v~~tFFEIYgGKvfDLL~~- 366 (676)
T KOG0246|consen 288 FEGGMATCFAYGQTGSGKTYTMGGDFSGKAQDCSKGIYALAARDVFRLLRQPTYRKLDLKVYVTFFEIYGGKVYDLLND- 366 (676)
T ss_pred HhCCceeeeeeccCCCCceeecccccCcccccccccchhhhhhHHHHHhcccchhhcceEEEEEEEEEeCcchhhhhcc-
Confidence 9999999999999999999999998766555667899999999999988763 23468999999999999999999997
Q ss_pred CCcceeeeccCCceEecCcEEEEecCHHHHHHHHHhhhhccCcccccCCCCCCCceEEEEEEEEEeecccceeEeeeeee
Q 047385 154 RDNIQIKESRVQGILLSGVTEIYVFNSAEALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQELTKEKRVKAGKLLL 233 (483)
Q Consensus 154 ~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~skL~~ 233 (483)
+..+.+.||.+..+.|.||++..|.+.+|++.+|+.|+..|+++.|..|..|||||+||+|.+... ......||+.|
T Consensus 367 k~KLrvLEDg~QQVqVVGLqE~~v~~~eeVl~lIe~Gns~RtsG~TsANs~SSRSHAvfQIilr~~---~~~k~hGKfSl 443 (676)
T KOG0246|consen 367 KKKLRVLEDGNQQVQVVGLQEEEVSGVEEVLELIEKGNSCRTSGQTSANSNSSRSHAVFQIILRKH---GEFKLHGKFSL 443 (676)
T ss_pred ccceEEeecCCceEEEeeceeeeccCHHHHHHHHHhcccccccCcccCcccccccceeEeeeeecC---CcceeEeEEEE
Confidence 568999999999999999999999999999999999999999999999999999999999999764 33567899999
Q ss_pred eeCCCCccccccC-CchhhHHHHHHhhhhHHHHHHHHHHhccCCCCCCCCccCCCcccchhhhhccCC-CcceeeeEeeC
Q 047385 234 VDLAGSEKAEKTG-AEGKVLEEAKTINKSLSALGNVISALTCGSPGKAFHIPYRDSKLTRILQDALGG-NSRTALLCCCS 311 (483)
Q Consensus 234 VDLAGsEr~~~t~-~~g~~~~E~~~IN~SL~aL~~vI~aL~~~~~~~~~~iPyRdSkLT~lLqdsLgG-ns~t~mI~~is 311 (483)
|||||+||...|. +..++..||..||+||+||..||+||.. .+.|+|||.||||.+|+|||-| |++|+||+|||
T Consensus 444 IDLAGnERGaDts~adRqtRlEGAEINKSLLALKECIRaLg~----nk~H~PFR~SKLTqVLRDSFIGenSrTcMIA~IS 519 (676)
T KOG0246|consen 444 IDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGR----NKSHLPFRGSKLTQVLRDSFIGENSRTCMIATIS 519 (676)
T ss_pred EEccCCccCCcccccchhhhhhhhhhhHHHHHHHHHHHHhcC----CCCCCCchhhhHHHHHHHhhcCCCCceEEEEEeC
Confidence 9999999987665 5667889999999999999999999987 5679999999999999999987 99999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhcccccCCc
Q 047385 312 PSTSNSAESLSTLRFGTRAKHIKASPH 338 (483)
Q Consensus 312 p~~~~~~ETlsTL~fa~rak~I~~~~~ 338 (483)
|...+.+.||||||||+|+|.....+.
T Consensus 520 Pg~~ScEhTLNTLRYAdRVKeLsv~~~ 546 (676)
T KOG0246|consen 520 PGISSCEHTLNTLRYADRVKELSVDGG 546 (676)
T ss_pred CCcchhhhhHHHHHHHHHHHhhcCCCC
Confidence 999999999999999999999865443
No 27
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.4e-72 Score=607.86 Aligned_cols=325 Identities=42% Similarity=0.608 Sum_probs=292.9
Q ss_pred eCCCCccccccCCCceEEEecCCceEEEeCCCCcceeEeecEEecCCCchHHHHHHHHHHHHHHhhcCcceEEEeeCCCC
Q 047385 10 FRPLSSKERSNHGDSVCIHGIDNESFIFKDDKEENFKFGFDRVFYEKSEQAEVFEFLALPIIRDAFNGMNGTVITYGQTG 89 (483)
Q Consensus 10 vRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~ayG~tg 89 (483)
|||+...|... +...|+.+.+..+.+... .+.+|+||+||+....|.++|+.+|.|+++.+|+|||+|++||||||
T Consensus 1 vRpl~~~e~~~-g~~~c~~~~~~~pqv~ig---~~~s~t~d~v~~~~~~Q~~~~e~~V~~l~~~lf~gynatvlaygQtg 76 (913)
T KOG0244|consen 1 VRPLKQMEEEQ-GCRRCTEVSPRTPQVAIG---KDASFTYDKVFLDLESQKEVYESCVRPLREKLFAGYNATVLAYGQTG 76 (913)
T ss_pred CCCccchHHHh-cchhhcccCCCCCceeec---CCcceeeeeeccCchHHHHHHHHHHHHHHHHHhhhhcceeeeecccC
Confidence 69999999875 457898866665544443 45799999999999999999999999999999999999999999999
Q ss_pred CCccceecCCCCCCccccccCchhhhHHHHHHhhhcCCCCcEEEEEEeEEEEecceeecccCCCCC--cceeeeccCCce
Q 047385 90 AGKTFSMEGPSILACDEQKKGLLQRTVDELFDCMKSSDASVKFTIKLSMVEIYMEKVRDLFDLSRD--NIQIKESRVQGI 167 (483)
Q Consensus 90 SGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyne~v~DLL~~~~~--~l~i~e~~~~g~ 167 (483)
|||||||.+.+.... .+.|+|||++..+|.++..... ..|.|.|||+|||++.|+|||.|... ++.+++ +.+++
T Consensus 77 sgkTytmgt~~~~~~--~~~Gvipr~v~~~f~~i~~~~~-~~f~i~vs~vely~e~v~dl~~~~~~~~~i~~~e-~~g~i 152 (913)
T KOG0244|consen 77 SGKTYTMGTNDAPAQ--DTVGVIPRAVSTLFTRIGKTES-FVFRITVSFVELYNEEVLDLLKPSRLKANIKLRE-PKGEI 152 (913)
T ss_pred CCceeeccccccccc--ccCCcCcchHHHHHHHHHhhhc-cceeeeeeeeeccchhhhhhcChhhhhhceeccc-cCCce
Confidence 999999988644322 2369999999999999988744 78999999999999999999986543 577777 77889
Q ss_pred EecCcEEEEecCHHHHHHHHHhhhhccCcccccCCCCCCCceEEEEEEEEEeec-ccceeEeeeeeeeeCCCCccccccC
Q 047385 168 LLSGVTEIYVFNSAEALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQELT-KEKRVKAGKLLLVDLAGSEKAEKTG 246 (483)
Q Consensus 168 ~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~-~~~~~~~skL~~VDLAGsEr~~~t~ 246 (483)
.+.|++++.|.+..+++..|..|...|++++|.||..|||||+||++.+++... ......++||+|||||||||.++|+
T Consensus 153 t~~glte~tv~~~~q~~~~L~~g~~~RtvasTnMN~qssRshAifti~lkq~kk~~~~s~~~sKlhlVDLAGSER~kkT~ 232 (913)
T KOG0244|consen 153 TIRGLTEKTVRMKLQLLSRLEKGSLERTVASTNMNAQSSRSHAIFTITLKQRKKLSKRSSFCSKLHLVDLAGSERVKKTK 232 (913)
T ss_pred EEEeehHHHHHHHHHHHHHHHhchHHHHHHHHhcchhhhhhhHHHHHHHHHHHHhhccchhhhhhheeeccccccccccc
Confidence 999999999999999999999999999999999999999999999999988433 3445677999999999999999999
Q ss_pred CchhhHHHHHHhhhhHHHHHHHHHHhccCCCCCCCCccCCCcccchhhhhccCCCcceeeeEeeCCCCCCHHHHHHHHHH
Q 047385 247 AEGKVLEEAKTINKSLSALGNVISALTCGSPGKAFHIPYRDSKLTRILQDALGGNSRTALLCCCSPSTSNSAESLSTLRF 326 (483)
Q Consensus 247 ~~g~~~~E~~~IN~SL~aL~~vI~aL~~~~~~~~~~iPyRdSkLT~lLqdsLgGns~t~mI~~isp~~~~~~ETlsTL~f 326 (483)
++|+|++||++||.+|++||+||+||.+.. +..|||||||||||||||+||||++|+||+||||++.+.+||++||+|
T Consensus 233 a~gdrlKEgInIN~gLL~LgnVIsaLg~~k--k~~~vpyRdSkltrlLQdslgGns~tlmiaCiSpadsn~~EtlnTl~y 310 (913)
T KOG0244|consen 233 AEGDRLKEGININGGLLALGNVISALGEAK--KGGEVPYRDSKLTRLLQDSLGGNSDTLMIACISPADSNAQETLNTLRY 310 (913)
T ss_pred cchhhhhhccCcchHHHHHHHHHHHHHhhh--cCCcccchHHHHHHHHHHHhcCCcceeeeeecChhhhhhhhHHHHHHH
Confidence 999999999999999999999999998753 367999999999999999999999999999999999999999999999
Q ss_pred HHHhcccccCCccccccc
Q 047385 327 GTRAKHIKASPHAHCSKE 344 (483)
Q Consensus 327 a~rak~I~~~~~~n~~~~ 344 (483)
|.||++|+|+|++|.++.
T Consensus 311 a~Rak~iknk~vvN~d~~ 328 (913)
T KOG0244|consen 311 ADRAKQIKNKPVVNQDPK 328 (913)
T ss_pred hhHHHHhcccccccccHH
Confidence 999999999999998654
No 28
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=5.7e-65 Score=549.54 Aligned_cols=290 Identities=40% Similarity=0.640 Sum_probs=276.9
Q ss_pred ceeEeecEEecCCCchHHHHHHHHHHHHHHhhcCcceEEEeeCCCCCCccceecCCCCCCccccccCchhhhHHHHHHhh
Q 047385 44 NFKFGFDRVFYEKSEQAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTVDELFDCM 123 (483)
Q Consensus 44 ~~~F~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~i 123 (483)
...|.||+||++.++|++||+..+.|+++.++.|||+||||||||||||||||.|.. ..+||||+++..||+.+
T Consensus 55 ~~~~~fdkvf~~~~~q~~v~e~~~~~l~~~~l~g~N~TvfayGqTgsgKtyt~~G~~------~~~Gii~~~l~~lf~~l 128 (568)
T COG5059 55 EGTYAFDKVFGPSATQEDVYEETIKPLIDSLLLGYNCTVFAYGQTGSGKTYTMSGTE------EEPGIIPLSLKELFSKL 128 (568)
T ss_pred ceEEEEeeccCCCCcHHHHHHHhhhhHHHHHHhcccceEEEEcccCCCceeEeecCc------cccchHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999999999999999953 67999999999999999
Q ss_pred hcCCCCcEEEEEEeEEEEecceeecccCCCCCcceeeeccCCceEecCcEEEEecCHHHHHHHHHhhhhccCcccccCCC
Q 047385 124 KSSDASVKFTIKLSMVEIYMEKVRDLFDLSRDNIQIKESRVQGILLSGVTEIYVFNSAEALQSLASGISNRAVGETQMNM 203 (483)
Q Consensus 124 ~~~~~~~~~~v~vS~~EIyne~v~DLL~~~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~ 203 (483)
.....+..|.|.+||+|||||+++|||.+....+.++++...+++|.|+++..+.+.+|++.+|.+|..+|+++.|.+|.
T Consensus 129 ~~~~~~~~~~v~is~lEiYnEk~~DLl~~~~~~~~~~~~~~~~v~v~~l~~~~~~s~ee~l~~l~~~~~nr~~~~te~n~ 208 (568)
T COG5059 129 EDLSMTKDFAVSISYLEIYNEKIYDLLSPNEESLNIREDSLLGVKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEIND 208 (568)
T ss_pred HhcccCcceeeEeehhHHHhhHHHhhccCccccccccccCCCceEeecceEEecCChHHHHHHHHHhhhhcccccchhcc
Confidence 88876788999999999999999999998877788999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEEEEEEEeecccceeEeeeeeeeeCCCCccccccCCchhhHHHHHHhhhhHHHHHHHHHHhccCCCCCCCCc
Q 047385 204 ASSRSHCIYIFTVQQELTKEKRVKAGKLLLVDLAGSEKAEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSPGKAFHI 283 (483)
Q Consensus 204 ~SSRSH~if~i~v~~~~~~~~~~~~skL~~VDLAGsEr~~~t~~~g~~~~E~~~IN~SL~aL~~vI~aL~~~~~~~~~~i 283 (483)
.|||||++|++++.+..........++++||||||||++..++..+.+++|+..||+||++||+||++|.+. ++..||
T Consensus 209 ~ssRshsi~~i~~~~~~~~~~~~~~~~l~lvDLagSE~~~~~~~~~~r~~E~~~iN~sLl~Lg~vI~~L~~~--~~~~~i 286 (568)
T COG5059 209 ESSRSHSIFQIELASKNKVSGTSETSKLSLVDLAGSERAARTGNRGTRLKEGASINKSLLTLGNVINALGDK--KKSGHI 286 (568)
T ss_pred ccccceEEEEEEEEEeccCccceecceEEEEeeccccccchhhcccchhhhhhhhHhhHHHHHHHHHHHhcc--ccCCcc
Confidence 999999999999999887777777789999999999999999999999999999999999999999999863 357799
Q ss_pred cCCCcccchhhhhccCCCcceeeeEeeCCCCCCHHHHHHHHHHHHHhcccccCCcccc
Q 047385 284 PYRDSKLTRILQDALGGNSRTALLCCCSPSTSNSAESLSTLRFGTRAKHIKASPHAHC 341 (483)
Q Consensus 284 PyRdSkLT~lLqdsLgGns~t~mI~~isp~~~~~~ETlsTL~fa~rak~I~~~~~~n~ 341 (483)
|||+|||||+|+++|||+++|+|||||+|...+++||.+||+||+||+.|++.+..|.
T Consensus 287 pyReskLTRlLq~sLgG~~~~~~i~~Isp~~~~~~et~~tL~~a~rak~I~~~~~~~~ 344 (568)
T COG5059 287 PYRESKLTRLLQDSLGGNCNTRVICTISPSSNSFEETINTLKFASRAKSIKNKIQVNS 344 (568)
T ss_pred chhhhHHHHHHHHhcCCCccEEEEEEEcCCCCchHHHHHHHHHHHHHhhcCCcccccC
Confidence 9999999999999999999999999999999999999999999999999999999985
No 29
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=100.00 E-value=1.8e-52 Score=394.05 Aligned_cols=176 Identities=48% Similarity=0.778 Sum_probs=166.7
Q ss_pred HHHHHHHHHHHHhhcCcceEEEeeCCCCCCccceecCCCCCCccccccCchhhhHHHHHHhhhcCCCCcEEEEEEeEEEE
Q 047385 62 VFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTVDELFDCMKSSDASVKFTIKLSMVEI 141 (483)
Q Consensus 62 vf~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EI 141 (483)
||+.++ |+|+.+++|+|+|||+||||||||||||+|+. +++||+||++++
T Consensus 8 vf~~~~-~~v~~~~~G~n~~i~~yG~tGsGKT~Tm~G~~------~~~Giip~~~~~----------------------- 57 (186)
T cd01363 8 VFRDVG-PLLQSALDGYNVCIFAYGQTGSGKTYTMEGKR------EGAGIIPRTVTD----------------------- 57 (186)
T ss_pred HHHHHH-HHHHHHhCCcceeEEEECCCCCcceEecCCCC------CCCCcchHHHHH-----------------------
Confidence 999999 99999999999999999999999999999964 578999999988
Q ss_pred ecceeecccCCCCCcceeeeccCCceEecCcEEEEecCHHHHHHHHHhhhhccCcccccCCCCCCCceEEEEEEEEEeec
Q 047385 142 YMEKVRDLFDLSRDNIQIKESRVQGILLSGVTEIYVFNSAEALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQELT 221 (483)
Q Consensus 142 yne~v~DLL~~~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~ 221 (483)
++.++..|.++|..+.|.+|..|||||+||+|++.+...
T Consensus 58 -----------------------------------------~~~ll~~g~~~R~~~~t~~N~~SSRsH~i~~i~v~~~~~ 96 (186)
T cd01363 58 -----------------------------------------VIDLMDKGNANRTTAATAMNEHSSRSHSVFRIHFGGKNA 96 (186)
T ss_pred -----------------------------------------HHHHHhhccccccccccCCCCccCcccEEEEEEEEEeec
Confidence 789999999999999999999999999999999998765
Q ss_pred cc---ceeEeeeeeeeeCCCCccccccCCchhhHHHHHHhhhhHHHHHHHHHHhccCCCCCCCCccCCCcccchhhhhcc
Q 047385 222 KE---KRVKAGKLLLVDLAGSEKAEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSPGKAFHIPYRDSKLTRILQDAL 298 (483)
Q Consensus 222 ~~---~~~~~skL~~VDLAGsEr~~~t~~~g~~~~E~~~IN~SL~aL~~vI~aL~~~~~~~~~~iPyRdSkLT~lLqdsL 298 (483)
.. .....|+|+||||||||+..++++.+.+++|+..||+||.+|++||.+|++ +..||||||||||+||||+|
T Consensus 97 ~~~~~~~~~~s~l~lVDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~~i~~l~~----~~~~vpyr~SkLT~lL~~~L 172 (186)
T cd01363 97 LASATEQPKVGKINLVDLAGSERIDFSGAEGSRLTETANINKSLSTLGNVISALAE----RDSHVPYRESKLTRLLQDSL 172 (186)
T ss_pred CCCCccceeeeeEEEEEccccccccccCCchhhHHHHHHHhhHHHHHHHHHHHHhc----CCCCCCCcccHHHHHHHHhc
Confidence 44 567789999999999999999999999999999999999999999999987 45799999999999999999
Q ss_pred CCCcceeeeEeeCC
Q 047385 299 GGNSRTALLCCCSP 312 (483)
Q Consensus 299 gGns~t~mI~~isp 312 (483)
||||+|+||+||||
T Consensus 173 ~g~~~t~~i~~vsP 186 (186)
T cd01363 173 GGNSRTLMVACISP 186 (186)
T ss_pred CCCCeEEEEEEeCc
Confidence 99999999999999
No 30
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=98.04 E-value=1.4e-08 Score=111.04 Aligned_cols=250 Identities=22% Similarity=0.262 Sum_probs=151.2
Q ss_pred CCeEEEEEeCCCCccccccCC-----CceEEEecCCceEEEe---CCCCcceeEeecEEecCCCchHHHHHHHHHHHHHH
Q 047385 2 SNITVCARFRPLSSKERSNHG-----DSVCIHGIDNESFIFK---DDKEENFKFGFDRVFYEKSEQAEVFEFLALPIIRD 73 (483)
Q Consensus 2 ~~i~V~vRvRP~~~~E~~~~~-----~~~~~~~~~~~~~~~~---~~~~~~~~F~FD~Vf~~~~~Q~~vf~~~~~plv~~ 73 (483)
.+++|+|+|+|.+...-.... ...+ .+. .++... +-......|.||.+|.+...+..++... ..+++.
T Consensus 305 ~~~~~i~~Isp~~~~~~et~~tL~~a~rak--~I~-~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~ 380 (568)
T COG5059 305 CNTRVICTISPSSNSFEETINTLKFASRAK--SIK-NKIQVNSSSDSSREIEEIKFDLSEDRSEIEILVFREQ-SQLSQS 380 (568)
T ss_pred ccEEEEEEEcCCCCchHHHHHHHHHHHHHh--hcC-CcccccCcCcchHHHHHHHhhhhhhhhhhhhHHHHHH-Hhhhhh
Confidence 478999999999844211000 0000 000 011111 1122446799999999999988888874 466777
Q ss_pred hhcCcceEEEeeCCCCCCccceecCCCCCCccccccCchhhhHHHHHHhhhcCC-CCcEEEEEEeEEEEecceeecccCC
Q 047385 74 AFNGMNGTVITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTVDELFDCMKSSD-ASVKFTIKLSMVEIYMEKVRDLFDL 152 (483)
Q Consensus 74 ~l~G~n~ti~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~i~~~~-~~~~~~v~vS~~EIyne~v~DLL~~ 152 (483)
.++| +++|++++++++++|.- ...++..-.+...|....... ..+.+...+-+.++|-....++...
T Consensus 381 ~~~~----~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~e 448 (568)
T COG5059 381 SLSG----IFAYMQSLKKETETLKS--------RIDLIMKSIISGTFERKKLLKEEGWKYKSTLQFLRIEIDRLLLLREE 448 (568)
T ss_pred hhhh----HHHHHhhhhhhhhcccc--------hhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777 89999999999999965 345666666677777665541 2233444444555552222222211
Q ss_pred CCC---cceeeeccCCceEecCcEEEEecCHHHHHHHHHhhhhccCcccccCCCCCCCceEEEEEEEEEeecccceeEee
Q 047385 153 SRD---NIQIKESRVQGILLSGVTEIYVFNSAEALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQELTKEKRVKAG 229 (483)
Q Consensus 153 ~~~---~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~s 229 (483)
... ................++... ....+. .-...+...+..+.+..|..++++|.+|...............
T Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~-- 524 (568)
T COG5059 449 ELSKKKTKIHKLNKLRHDLSSLLSSIP-EETSDR-VESEKASKLRSSASTKLNLRSSRSHSKFRDHLNGSNSSTKELS-- 524 (568)
T ss_pred hcCChHHHHHHHHHHHHHHHHhhhhcc-hhhhhh-hhhhhhccchhhcccchhhhhcccchhhhhcccchhhhhHHHH--
Confidence 110 000000000000000001000 001111 1112567788889999999999999999877765433222222
Q ss_pred eeeeeeCCCCccccccCCchhhHHHHHHhhhhHHHHHHHHHHhc
Q 047385 230 KLLLVDLAGSEKAEKTGAEGKVLEEAKTINKSLSALGNVISALT 273 (483)
Q Consensus 230 kL~~VDLAGsEr~~~t~~~g~~~~E~~~IN~SL~aL~~vI~aL~ 273 (483)
++.|||||+||. ....-|.++++..++|++|..++.+|.++.
T Consensus 525 -~n~~~~~~~e~~-~s~~~~~~l~~~~~~~k~l~~~~d~~~~~~ 566 (568)
T COG5059 525 -LNQVDLAGSERK-VSQSVGELLRETQSLNKSLSSLGDVIHALG 566 (568)
T ss_pred -hhhhhccccccc-hhhhhHHHHHhhHhhhhccccchhhhhhcc
Confidence 799999999999 888999999999999999999999998864
No 31
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=95.70 E-value=0.017 Score=61.69 Aligned_cols=95 Identities=21% Similarity=0.283 Sum_probs=62.7
Q ss_pred eeEeecEEecCCCchHHHHHHHHHHHHHHhhcCcceEEEeeCCCCCCccceecCCCCCCccccccCchh----hhHHHHH
Q 047385 45 FKFGFDRVFYEKSEQAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSMEGPSILACDEQKKGLLQ----RTVDELF 120 (483)
Q Consensus 45 ~~F~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giip----r~~~~LF 120 (483)
..|....-|.|.-+|-.-- ..||+.+-.|...-+ -.|.|||||||||-.--. .-..|-||- -.+.+||
T Consensus 3 ~~F~l~s~f~PaGDQP~AI----~~Lv~gi~~g~~~Qt-LLGvTGSGKTfT~AnVI~---~~~rPtLV~AhNKTLAaQLy 74 (663)
T COG0556 3 KPFKLHSPFKPAGDQPEAI----AELVEGIENGLKHQT-LLGVTGSGKTFTMANVIA---KVQRPTLVLAHNKTLAAQLY 74 (663)
T ss_pred CceEeccCCCCCCCcHHHH----HHHHHHHhcCceeeE-EeeeccCCchhHHHHHHH---HhCCCeEEEecchhHHHHHH
Confidence 3577777888888887544 445566666665543 479999999999955100 001122221 2356788
Q ss_pred HhhhcCCCCcEEEEEEeEEEEecceee
Q 047385 121 DCMKSSDASVKFTIKLSMVEIYMEKVR 147 (483)
Q Consensus 121 ~~i~~~~~~~~~~v~vS~~EIyne~v~ 147 (483)
..++.--++..+...|||+..|+-..|
T Consensus 75 ~Efk~fFP~NaVEYFVSYYDYYQPEAY 101 (663)
T COG0556 75 SEFKEFFPENAVEYFVSYYDYYQPEAY 101 (663)
T ss_pred HHHHHhCcCcceEEEeeeccccCcccc
Confidence 877777677788899999999986644
No 32
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=94.37 E-value=0.015 Score=56.26 Aligned_cols=51 Identities=24% Similarity=0.374 Sum_probs=31.8
Q ss_pred eeEeecEEecCCCchHHHHHHHHHHHHHHhhcCcceEEEeeCCCCCCccceecC
Q 047385 45 FKFGFDRVFYEKSEQAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 45 ~~F~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm~G 98 (483)
..|+||.-+..+ .++..|.. +..+.+.--..+|. ++-||++|+||||.|.+
T Consensus 3 ~~~tFdnfv~g~-~N~~a~~~-~~~ia~~~~~~~~~-l~l~G~~G~GKTHLL~A 53 (219)
T PF00308_consen 3 PKYTFDNFVVGE-SNELAYAA-AKAIAENPGERYNP-LFLYGPSGLGKTHLLQA 53 (219)
T ss_dssp TT-SCCCS--TT-TTHHHHHH-HHHHHHSTTTSSSE-EEEEESTTSSHHHHHHH
T ss_pred CCCccccCCcCC-cHHHHHHH-HHHHHhcCCCCCCc-eEEECCCCCCHHHHHHH
Confidence 468999876543 35666654 44455542223444 78899999999998765
No 33
>PRK06893 DNA replication initiation factor; Validated
Probab=93.82 E-value=0.046 Score=53.14 Aligned_cols=48 Identities=8% Similarity=0.137 Sum_probs=32.6
Q ss_pred eeEeecEEecCCCchHHHHHHHHHHHHHHhhcCcceEEEeeCCCCCCccceecC
Q 047385 45 FKFGFDRVFYEKSEQAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 45 ~~F~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm~G 98 (483)
..++||..+.... ..-+ ..+.+.+-.++|..++-||++|+||||.+..
T Consensus 11 ~~~~fd~f~~~~~-~~~~-----~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a 58 (229)
T PRK06893 11 DDETLDNFYADNN-LLLL-----DSLRKNFIDLQQPFFYIWGGKSSGKSHLLKA 58 (229)
T ss_pred CcccccccccCCh-HHHH-----HHHHHHhhccCCCeEEEECCCCCCHHHHHHH
Confidence 4678999886543 2211 1222333357787889999999999999865
No 34
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.78 E-value=0.035 Score=55.75 Aligned_cols=30 Identities=30% Similarity=0.609 Sum_probs=27.5
Q ss_pred HHHHHHhhcCcceEEEeeCCCCCCccceec
Q 047385 68 LPIIRDAFNGMNGTVITYGQTGAGKTFSME 97 (483)
Q Consensus 68 ~plv~~~l~G~n~ti~ayG~tgSGKT~Tm~ 97 (483)
.|++..+.+--++.|+..|+||||||.||-
T Consensus 114 P~i~~~~~~~~~GLILVTGpTGSGKSTTlA 143 (353)
T COG2805 114 PPIVRELAESPRGLILVTGPTGSGKSTTLA 143 (353)
T ss_pred CHHHHHHHhCCCceEEEeCCCCCcHHHHHH
Confidence 678888999999999999999999999984
No 35
>PRK06620 hypothetical protein; Validated
Probab=92.80 E-value=0.055 Score=52.12 Aligned_cols=50 Identities=22% Similarity=0.383 Sum_probs=34.1
Q ss_pred ceeEeecEEecCCCchHHHHHHHHHHHHHHhhcCcc---eEEEeeCCCCCCccceec
Q 047385 44 NFKFGFDRVFYEKSEQAEVFEFLALPIIRDAFNGMN---GTVITYGQTGAGKTFSME 97 (483)
Q Consensus 44 ~~~F~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n---~ti~ayG~tgSGKT~Tm~ 97 (483)
+..|+||..+...+ +...|..+. .+.+. . |+| -.++-||++||||||.+.
T Consensus 10 ~~~~tfd~Fvvg~~-N~~a~~~~~-~~~~~-~-~~~~~~~~l~l~Gp~G~GKThLl~ 62 (214)
T PRK06620 10 SSKYHPDEFIVSSS-NDQAYNIIK-NWQCG-F-GVNPYKFTLLIKGPSSSGKTYLTK 62 (214)
T ss_pred CCCCCchhhEeccc-HHHHHHHHH-HHHHc-c-ccCCCcceEEEECCCCCCHHHHHH
Confidence 45789998777654 455776644 33331 1 444 348899999999999985
No 36
>PRK09087 hypothetical protein; Validated
Probab=91.87 E-value=0.11 Score=50.53 Aligned_cols=48 Identities=21% Similarity=0.262 Sum_probs=32.4
Q ss_pred ceeEeecEEecCCCchHHHHHHHHHHHHHHhhcCcceEEEeeCCCCCCccceec
Q 047385 44 NFKFGFDRVFYEKSEQAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSME 97 (483)
Q Consensus 44 ~~~F~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm~ 97 (483)
...|+||.-+..+++ ..+|..+. ....-.+-.++-||++||||||.+.
T Consensus 15 ~~~~~~~~Fi~~~~N-~~a~~~l~-----~~~~~~~~~l~l~G~~GsGKThLl~ 62 (226)
T PRK09087 15 DPAYGRDDLLVTESN-RAAVSLVD-----HWPNWPSPVVVLAGPVGSGKTHLAS 62 (226)
T ss_pred CCCCChhceeecCch-HHHHHHHH-----hcccCCCCeEEEECCCCCCHHHHHH
Confidence 356889988865443 45776432 2222235558899999999999985
No 37
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.70 E-value=0.085 Score=56.51 Aligned_cols=30 Identities=27% Similarity=0.426 Sum_probs=26.3
Q ss_pred HHHHHhhcCcceEEEeeCCCCCCccceecC
Q 047385 69 PIIRDAFNGMNGTVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 69 plv~~~l~G~n~ti~ayG~tgSGKT~Tm~G 98 (483)
..+..++..-++.|+.-|+||||||.||+.
T Consensus 248 ~~~~~~~~~p~GliLvTGPTGSGKTTTLY~ 277 (500)
T COG2804 248 ARLLRLLNRPQGLILVTGPTGSGKTTTLYA 277 (500)
T ss_pred HHHHHHHhCCCeEEEEeCCCCCCHHHHHHH
Confidence 455677788899999999999999999987
No 38
>PRK12377 putative replication protein; Provisional
Probab=91.64 E-value=0.13 Score=50.86 Aligned_cols=51 Identities=20% Similarity=0.270 Sum_probs=36.4
Q ss_pred eEeecEEecCCCchHHHHHHHHHHHHHHhhcCcceEEEeeCCCCCCccceecC
Q 047385 46 KFGFDRVFYEKSEQAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 46 ~F~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm~G 98 (483)
..+||........|..++.. +..+++.+..+. ..++-||++|+||||.+..
T Consensus 70 ~~tFdnf~~~~~~~~~a~~~-a~~~a~~~~~~~-~~l~l~G~~GtGKThLa~A 120 (248)
T PRK12377 70 KCSFANYQVQNDGQRYALSQ-AKSIADELMTGC-TNFVFSGKPGTGKNHLAAA 120 (248)
T ss_pred cCCcCCcccCChhHHHHHHH-HHHHHHHHHhcC-CeEEEECCCCCCHHHHHHH
Confidence 34677655555566667765 556777776654 4577899999999999866
No 39
>PRK08084 DNA replication initiation factor; Provisional
Probab=91.24 E-value=0.15 Score=49.70 Aligned_cols=48 Identities=15% Similarity=0.319 Sum_probs=31.7
Q ss_pred eeEeecEEecCCCchHHHHHHHHHHHHHHhhcCcceEEEeeCCCCCCccceecC
Q 047385 45 FKFGFDRVFYEKSEQAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 45 ~~F~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm~G 98 (483)
..|+||.-+.. .+...+..+. .+.. ......++-||++|+||||.+.+
T Consensus 17 ~~~~fd~f~~~--~n~~a~~~l~-~~~~---~~~~~~l~l~Gp~G~GKThLl~a 64 (235)
T PRK08084 17 DDETFASFYPG--DNDSLLAALQ-NALR---QEHSGYIYLWSREGAGRSHLLHA 64 (235)
T ss_pred CcCCccccccC--ccHHHHHHHH-HHHh---CCCCCeEEEECCCCCCHHHHHHH
Confidence 46788876654 4566665533 3322 22224688999999999999865
No 40
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=90.92 E-value=0.13 Score=56.89 Aligned_cols=51 Identities=24% Similarity=0.370 Sum_probs=35.0
Q ss_pred eeEeecEEecCCCchHHHHHHHHHHHHHHhhcCcceEEEeeCCCCCCccceecC
Q 047385 45 FKFGFDRVFYEKSEQAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 45 ~~F~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm~G 98 (483)
..|+||..+-... +...|.. +..+++..-.++|. ||-||.+|+||||.+..
T Consensus 283 ~~~TFDnFvvG~s-N~~A~aa-a~avae~~~~~~Np-L~LyG~sGsGKTHLL~A 333 (617)
T PRK14086 283 PKYTFDTFVIGAS-NRFAHAA-AVAVAEAPAKAYNP-LFIYGESGLGKTHLLHA 333 (617)
T ss_pred CCCCHhhhcCCCc-cHHHHHH-HHHHHhCccccCCc-EEEECCCCCCHHHHHHH
Confidence 5699997665443 4445533 44555544456775 78899999999999865
No 41
>PRK05642 DNA replication initiation factor; Validated
Probab=90.90 E-value=0.15 Score=49.65 Aligned_cols=47 Identities=13% Similarity=0.357 Sum_probs=29.3
Q ss_pred eeEeecEEecCCCchHHHHHHHHHHHHHHhhc---Cc-ceEEEeeCCCCCCccceecC
Q 047385 45 FKFGFDRVFYEKSEQAEVFEFLALPIIRDAFN---GM-NGTVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 45 ~~F~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~---G~-n~ti~ayG~tgSGKT~Tm~G 98 (483)
..|+||.-+... +...+.. ++...+ +. ...++-||++|+||||.+..
T Consensus 14 ~~~tfdnF~~~~--~~~a~~~-----~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~a 64 (234)
T PRK05642 14 DDATFANYYPGA--NAAALGY-----VERLCEADAGWTESLIYLWGKDGVGRSHLLQA 64 (234)
T ss_pred CcccccccCcCC--hHHHHHH-----HHHHhhccccCCCCeEEEECCCCCCHHHHHHH
Confidence 468899877442 3333333 332222 22 24578899999999999755
No 42
>PRK08116 hypothetical protein; Validated
Probab=90.70 E-value=0.17 Score=50.58 Aligned_cols=52 Identities=15% Similarity=0.263 Sum_probs=35.6
Q ss_pred eeEeecEEecCCCchHHHHHHHHHHHHHHhhc--CcceEEEeeCCCCCCccceecC
Q 047385 45 FKFGFDRVFYEKSEQAEVFEFLALPIIRDAFN--GMNGTVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 45 ~~F~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~--G~n~ti~ayG~tgSGKT~Tm~G 98 (483)
..++||.-. .+..+...|.. +...++.+.. ..+..++-||++|+||||.+..
T Consensus 80 ~~~tFdnf~-~~~~~~~a~~~-a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~a 133 (268)
T PRK08116 80 RNSTFENFL-FDKGSEKAYKI-ARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAAC 133 (268)
T ss_pred Hhcchhccc-CChHHHHHHHH-HHHHHHHHHhhccCCceEEEECCCCCCHHHHHHH
Confidence 357888654 34556556654 5566666543 3455688999999999999754
No 43
>PRK06526 transposase; Provisional
Probab=90.44 E-value=0.13 Score=51.05 Aligned_cols=41 Identities=22% Similarity=0.310 Sum_probs=26.6
Q ss_pred ecCCCchHHHHHHHHHHHHHHhhcCcceEEEeeCCCCCCccceecC
Q 047385 53 FYEKSEQAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 53 f~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm~G 98 (483)
+.+.-++..+..-...+.++ .+.| |+.||++|+||||.+.+
T Consensus 77 ~~~~~~~~~~~~l~~~~fi~---~~~n--lll~Gp~GtGKThLa~a 117 (254)
T PRK06526 77 HQRSLKRDTIAHLGTLDFVT---GKEN--VVFLGPPGTGKTHLAIG 117 (254)
T ss_pred cCCCcchHHHHHHhcCchhh---cCce--EEEEeCCCCchHHHHHH
Confidence 44444554454443444444 4555 68899999999999875
No 44
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=90.31 E-value=0.18 Score=53.99 Aligned_cols=52 Identities=17% Similarity=0.314 Sum_probs=34.9
Q ss_pred cceeEeecEEecCCCchHHHHHHHHHHHHHHhhcCcceEEEeeCCCCCCccceecC
Q 047385 43 ENFKFGFDRVFYEKSEQAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 43 ~~~~F~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm~G 98 (483)
-+..|+||.-+-. .++...|..+. .+.+. -..+|. +|-||++|+||||.+..
T Consensus 98 l~~~~tFdnFv~g-~~n~~a~~~~~-~~~~~-~~~~n~-l~lyG~~G~GKTHLl~a 149 (440)
T PRK14088 98 LNPDYTFENFVVG-PGNSFAYHAAL-EVAKN-PGRYNP-LFIYGGVGLGKTHLLQS 149 (440)
T ss_pred CCCCCcccccccC-CchHHHHHHHH-HHHhC-cCCCCe-EEEEcCCCCcHHHHHHH
Confidence 3467999987754 34555666533 33332 122665 88999999999999865
No 45
>PRK07952 DNA replication protein DnaC; Validated
Probab=90.06 E-value=0.26 Score=48.49 Aligned_cols=52 Identities=17% Similarity=0.201 Sum_probs=35.1
Q ss_pred eeEeecEEecCCCchHHHHHHHHHHHHHHhhcCcceEEEeeCCCCCCccceecC
Q 047385 45 FKFGFDRVFYEKSEQAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 45 ~~F~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm~G 98 (483)
...+||........|..++.. +...++.+..|.. .++-+|++|+||||.+.+
T Consensus 67 ~~~tFdnf~~~~~~q~~al~~-a~~~~~~~~~~~~-~~~l~G~~GtGKThLa~a 118 (244)
T PRK07952 67 QNCSFENYRVECEGQMNALSK-ARQYVEEFDGNIA-SFIFSGKPGTGKNHLAAA 118 (244)
T ss_pred cCCccccccCCCchHHHHHHH-HHHHHHhhccCCc-eEEEECCCCCCHHHHHHH
Confidence 356777655444556667665 3455565544433 678899999999999865
No 46
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=89.71 E-value=0.23 Score=52.36 Aligned_cols=52 Identities=25% Similarity=0.379 Sum_probs=32.2
Q ss_pred ceeEeecEEecCCCchHHHHHHHHHHHHHHhhcCcceEEEeeCCCCCCccceecC
Q 047385 44 NFKFGFDRVFYEKSEQAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 44 ~~~F~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm~G 98 (483)
+..|+||.... +..+...|.. +..+...--..+| .++-||++|+||||.+..
T Consensus 104 ~~~~tfd~fi~-g~~n~~a~~~-~~~~~~~~~~~~n-~l~l~G~~G~GKThL~~a 155 (405)
T TIGR00362 104 NPKYTFDNFVV-GKSNRLAHAA-ALAVAENPGKAYN-PLFIYGGVGLGKTHLLHA 155 (405)
T ss_pred CCCCccccccc-CCcHHHHHHH-HHHHHhCcCccCC-eEEEECCCCCcHHHHHHH
Confidence 45789998443 2345556644 3344443111244 477899999999999854
No 47
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=89.62 E-value=0.23 Score=53.26 Aligned_cols=50 Identities=18% Similarity=0.348 Sum_probs=32.5
Q ss_pred eEeecEEecCCCchHHHHHHHHHHHHHHhhcCcceEEEeeCCCCCCccceecC
Q 047385 46 KFGFDRVFYEKSEQAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 46 ~F~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm~G 98 (483)
.|+||.-+... +++..|.. +..+...--..+| .+|-||++|+||||.|..
T Consensus 111 ~~tFdnFv~g~-~n~~A~~a-a~~~a~~~~~~~n-pl~i~G~~G~GKTHLl~A 160 (450)
T PRK14087 111 ENTFENFVIGS-SNEQAFIA-VQTVSKNPGISYN-PLFIYGESGMGKTHLLKA 160 (450)
T ss_pred ccchhcccCCC-cHHHHHHH-HHHHHhCcCcccC-ceEEECCCCCcHHHHHHH
Confidence 58999876544 45556643 4444432111244 478899999999999855
No 48
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=89.13 E-value=0.25 Score=52.88 Aligned_cols=52 Identities=25% Similarity=0.381 Sum_probs=32.7
Q ss_pred ceeEeecEEecCCCchHHHHHHHHHHHHHHhhcCcceEEEeeCCCCCCccceecC
Q 047385 44 NFKFGFDRVFYEKSEQAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 44 ~~~F~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm~G 98 (483)
+..|+||.-... ..+...|.. +..+.+.--..+| .++-||++|+||||.+..
T Consensus 116 ~~~~tfd~fv~g-~~n~~a~~~-~~~~~~~~~~~~~-~l~l~G~~G~GKThL~~a 167 (450)
T PRK00149 116 NPKYTFDNFVVG-KSNRLAHAA-ALAVAENPGKAYN-PLFIYGGVGLGKTHLLHA 167 (450)
T ss_pred CCCCcccccccC-CCcHHHHHH-HHHHHhCcCccCC-eEEEECCCCCCHHHHHHH
Confidence 467899974433 345555654 3344443222345 477899999999999855
No 49
>PRK06835 DNA replication protein DnaC; Validated
Probab=88.74 E-value=0.19 Score=51.73 Aligned_cols=36 Identities=28% Similarity=0.422 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHhhcCcceEEEeeCCCCCCccceecC
Q 047385 61 EVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 61 ~vf~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm~G 98 (483)
.+++. +...++.+-.+. -.++-||++|+||||.+.+
T Consensus 167 ~~~~~-~~~f~~~f~~~~-~~Lll~G~~GtGKThLa~a 202 (329)
T PRK06835 167 KILEK-CKNFIENFDKNN-ENLLFYGNTGTGKTFLSNC 202 (329)
T ss_pred HHHHH-HHHHHHHHhccC-CcEEEECCCCCcHHHHHHH
Confidence 34543 456777776554 5588899999999998865
No 50
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=88.41 E-value=0.3 Score=44.34 Aligned_cols=37 Identities=24% Similarity=0.199 Sum_probs=24.0
Q ss_pred chHHHHHHHHHHHHHHhhcC-cceEEEeeCCCCCCccceecC
Q 047385 58 EQAEVFEFLALPIIRDAFNG-MNGTVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 58 ~Q~~vf~~~~~plv~~~l~G-~n~ti~ayG~tgSGKT~Tm~G 98 (483)
-|.++...+. +.+-.+ ....++..++||||||++|..
T Consensus 7 ~Q~~ai~~i~----~~~~~~~~~~~~ll~~~tGsGKT~~~~~ 44 (184)
T PF04851_consen 7 YQQEAIARII----NSLENKKEERRVLLNAPTGSGKTIIALA 44 (184)
T ss_dssp HHHHHHHHHH----HHHHTTSGCSEEEEEESTTSSHHHHHHH
T ss_pred HHHHHHHHHH----HHHHhcCCCCCEEEEECCCCCcChhhhh
Confidence 3555555544 333333 345566688999999999976
No 51
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=88.18 E-value=0.31 Score=51.41 Aligned_cols=52 Identities=25% Similarity=0.379 Sum_probs=32.1
Q ss_pred cceeEeecEEecCCCchHHHHHHHHHHHHHHhhc-CcceEEEeeCCCCCCccceecC
Q 047385 43 ENFKFGFDRVFYEKSEQAEVFEFLALPIIRDAFN-GMNGTVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 43 ~~~~F~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~-G~n~ti~ayG~tgSGKT~Tm~G 98 (483)
-+..|+||....... +.-.|.. +..+ ...-. -|| -+|-||++|+||||.|..
T Consensus 80 l~~~ytFdnFv~g~~-N~~A~aa-~~~v-a~~~g~~~n-plfi~G~~GlGKTHLl~A 132 (408)
T COG0593 80 LNPKYTFDNFVVGPS-NRLAYAA-AKAV-AENPGGAYN-PLFIYGGVGLGKTHLLQA 132 (408)
T ss_pred CCCCCchhheeeCCc-hHHHHHH-HHHH-HhccCCcCC-cEEEECCCCCCHHHHHHH
Confidence 456899997665444 3444433 2122 22222 255 578899999999999954
No 52
>PRK08727 hypothetical protein; Validated
Probab=88.10 E-value=0.26 Score=47.99 Aligned_cols=46 Identities=20% Similarity=0.209 Sum_probs=27.6
Q ss_pred eeEeecEEecCCCchHHHHHHHHHHHHHHhhcCcc-eEEEeeCCCCCCccceecC
Q 047385 45 FKFGFDRVFYEKSEQAEVFEFLALPIIRDAFNGMN-GTVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 45 ~~F~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n-~ti~ayG~tgSGKT~Tm~G 98 (483)
..|+||.-+...+ + ....+ .++ ..|.. -.|+-||++|+||||.+..
T Consensus 14 ~~~~f~~f~~~~~-n--~~~~~-~~~----~~~~~~~~l~l~G~~G~GKThL~~a 60 (233)
T PRK08727 14 SDQRFDSYIAAPD-G--LLAQL-QAL----AAGQSSDWLYLSGPAGTGKTHLALA 60 (233)
T ss_pred CcCChhhccCCcH-H--HHHHH-HHH----HhccCCCeEEEECCCCCCHHHHHHH
Confidence 4568888664433 2 22221 122 12322 3589999999999999855
No 53
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=88.10 E-value=0.4 Score=41.15 Aligned_cols=19 Identities=32% Similarity=0.496 Sum_probs=15.4
Q ss_pred cceEEEeeCCCCCCcccee
Q 047385 78 MNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 78 ~n~ti~ayG~tgSGKT~Tm 96 (483)
....++.+|++|+|||+++
T Consensus 18 ~~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 3446788999999999765
No 54
>PRK08939 primosomal protein DnaI; Reviewed
Probab=87.88 E-value=0.31 Score=49.66 Aligned_cols=51 Identities=16% Similarity=0.298 Sum_probs=33.9
Q ss_pred EeecEEecCCCchHHHHHHHHHHHHHHhhcC-cceEEEeeCCCCCCccceecC
Q 047385 47 FGFDRVFYEKSEQAEVFEFLALPIIRDAFNG-MNGTVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 47 F~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G-~n~ti~ayG~tgSGKT~Tm~G 98 (483)
.+||.+-..+..+..++.. +...++....| ..-.++-||++|+||||.+.+
T Consensus 124 atf~~~~~~~~~~~~~~~~-~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~A 175 (306)
T PRK08939 124 ASLADIDLDDRDRLDALMA-ALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAA 175 (306)
T ss_pred CcHHHhcCCChHHHHHHHH-HHHHHHHhhccCCCCeEEEECCCCCCHHHHHHH
Confidence 4555544333356667764 45677766543 233588899999999999866
No 55
>PF13245 AAA_19: Part of AAA domain
Probab=87.71 E-value=0.29 Score=39.13 Aligned_cols=27 Identities=26% Similarity=0.448 Sum_probs=18.4
Q ss_pred HHHhhcCcceEEEeeCCCCCCccceecC
Q 047385 71 IRDAFNGMNGTVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 71 v~~~l~G~n~ti~ayG~tgSGKT~Tm~G 98 (483)
|...+. -+..++..|+.|||||+|+..
T Consensus 3 v~~al~-~~~~~vv~g~pGtGKT~~~~~ 29 (76)
T PF13245_consen 3 VRRALA-GSPLFVVQGPPGTGKTTTLAA 29 (76)
T ss_pred HHHHHh-hCCeEEEECCCCCCHHHHHHH
Confidence 344455 333455589999999999754
No 56
>PRK08181 transposase; Validated
Probab=87.56 E-value=0.38 Score=48.05 Aligned_cols=21 Identities=29% Similarity=0.657 Sum_probs=17.8
Q ss_pred cCcceEEEeeCCCCCCccceecC
Q 047385 76 NGMNGTVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 76 ~G~n~ti~ayG~tgSGKT~Tm~G 98 (483)
.|.| |+-||++|+||||.+.+
T Consensus 105 ~~~n--lll~Gp~GtGKTHLa~A 125 (269)
T PRK08181 105 KGAN--LLLFGPPGGGKSHLAAA 125 (269)
T ss_pred cCce--EEEEecCCCcHHHHHHH
Confidence 5555 78899999999999876
No 57
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=87.52 E-value=0.41 Score=45.69 Aligned_cols=48 Identities=19% Similarity=0.320 Sum_probs=31.3
Q ss_pred eeEeecEEecCCCchHHHHHHHHHHHHHHhhcCcceEEEeeCCCCCCccceecC
Q 047385 45 FKFGFDRVFYEKSEQAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 45 ~~F~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm~G 98 (483)
..++||....+ .+..+++..- .++ ..+....|+-||++|+||||....
T Consensus 10 ~~~~~~~~~~~--~~~~~~~~l~-~~~---~~~~~~~lll~G~~G~GKT~la~~ 57 (226)
T TIGR03420 10 DDPTFDNFYAG--GNAELLAALR-QLA---AGKGDRFLYLWGESGSGKSHLLQA 57 (226)
T ss_pred CchhhcCcCcC--CcHHHHHHHH-HHH---hcCCCCeEEEECCCCCCHHHHHHH
Confidence 35777776632 3455555433 222 245667889999999999998743
No 58
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=87.07 E-value=0.56 Score=48.94 Aligned_cols=21 Identities=33% Similarity=0.550 Sum_probs=16.9
Q ss_pred cCcceEEEeeCCCCCCcccee
Q 047385 76 NGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 76 ~G~n~ti~ayG~tgSGKT~Tm 96 (483)
.+....++-||++|+|||+++
T Consensus 52 ~~~~~~~lI~G~~GtGKT~l~ 72 (394)
T PRK00411 52 GSRPLNVLIYGPPGTGKTTTV 72 (394)
T ss_pred CCCCCeEEEECCCCCCHHHHH
Confidence 344556889999999999986
No 59
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=87.02 E-value=0.52 Score=48.58 Aligned_cols=21 Identities=38% Similarity=0.586 Sum_probs=17.3
Q ss_pred cCcceEEEeeCCCCCCcccee
Q 047385 76 NGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 76 ~G~n~ti~ayG~tgSGKT~Tm 96 (483)
.+....++.||++|+|||+++
T Consensus 37 ~~~~~~i~I~G~~GtGKT~l~ 57 (365)
T TIGR02928 37 GSRPSNVFIYGKTGTGKTAVT 57 (365)
T ss_pred CCCCCcEEEECCCCCCHHHHH
Confidence 345567899999999999876
No 60
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=86.95 E-value=0.37 Score=50.88 Aligned_cols=51 Identities=24% Similarity=0.406 Sum_probs=34.3
Q ss_pred eEeecEEecCCCchHHHHHHHHHHHHH-Hhhc--C--cceEEEeeCCCCCCcccee
Q 047385 46 KFGFDRVFYEKSEQAEVFEFLALPIIR-DAFN--G--MNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 46 ~F~FD~Vf~~~~~Q~~vf~~~~~plv~-~~l~--G--~n~ti~ayG~tgSGKT~Tm 96 (483)
..+|+.|-+.+..-+++-+.+..|+.. ..+. | ....|+-||++|+|||+..
T Consensus 141 ~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LA 196 (398)
T PTZ00454 141 DVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLA 196 (398)
T ss_pred CCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHH
Confidence 467788877665555666665566653 2333 2 2346888999999999875
No 61
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=86.92 E-value=0.65 Score=48.26 Aligned_cols=51 Identities=25% Similarity=0.458 Sum_probs=29.2
Q ss_pred eEeecEEecCCCchHHHHHHHHHHHHHH-hhc--Cc--ceEEEeeCCCCCCcccee
Q 047385 46 KFGFDRVFYEKSEQAEVFEFLALPIIRD-AFN--GM--NGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 46 ~F~FD~Vf~~~~~Q~~vf~~~~~plv~~-~l~--G~--n~ti~ayG~tgSGKT~Tm 96 (483)
.+.||.+.+-+..-+++.+.+..|+... .+. |. ...|+-||++|+|||++.
T Consensus 118 ~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~la 173 (364)
T TIGR01242 118 NVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLA 173 (364)
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHH
Confidence 3555666555444444544444444321 121 22 335888999999999876
No 62
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=86.52 E-value=0.82 Score=51.42 Aligned_cols=93 Identities=19% Similarity=0.253 Sum_probs=58.1
Q ss_pred EeecEEecCCCchHHHHHHHHHHHHHHhhcCcceEEEeeCCCCCCccceecCCCCCCccccccCchh----hhHHHHHHh
Q 047385 47 FGFDRVFYEKSEQAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSMEGPSILACDEQKKGLLQ----RTVDELFDC 122 (483)
Q Consensus 47 F~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giip----r~~~~LF~~ 122 (483)
|....-|.|.-.|..-|+..+ +.+-+|...- ..+|.|||||||||..--.. ...+-||- ..+..|++.
T Consensus 2 f~~~~~~~~~~~Q~~ai~~l~----~~~~~~~~~~-~l~Gvtgs~kt~~~a~~~~~---~~~p~Lvi~~n~~~A~ql~~e 73 (655)
T TIGR00631 2 FKLHSPFQPAGDQPKAIAKLV----EGLTDGEKHQ-TLLGVTGSGKTFTMANVIAQ---VNRPTLVIAHNKTLAAQLYNE 73 (655)
T ss_pred ceeccCCCCChHHHHHHHHHH----HhhhcCCCcE-EEECCCCcHHHHHHHHHHHH---hCCCEEEEECCHHHHHHHHHH
Confidence 444556788888988887654 4444554222 36899999999999762111 01122221 234556666
Q ss_pred hhcCCCCcEEEEEEeEEEEecceee
Q 047385 123 MKSSDASVKFTIKLSMVEIYMEKVR 147 (483)
Q Consensus 123 i~~~~~~~~~~v~vS~~EIyne~v~ 147 (483)
++.--+...+...|||+..|.-..|
T Consensus 74 l~~f~p~~~V~~f~sy~d~y~pe~y 98 (655)
T TIGR00631 74 FKEFFPENAVEYFVSYYDYYQPEAY 98 (655)
T ss_pred HHHhCCCCeEEEEeeecccCCcccc
Confidence 6554444568889999999987644
No 63
>PRK10436 hypothetical protein; Provisional
Probab=86.49 E-value=0.33 Score=52.28 Aligned_cols=29 Identities=31% Similarity=0.546 Sum_probs=23.7
Q ss_pred HHHHhhcCcceEEEeeCCCCCCccceecC
Q 047385 70 IIRDAFNGMNGTVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 70 lv~~~l~G~n~ti~ayG~tgSGKT~Tm~G 98 (483)
.+..++..-++.|+..|+||||||.||+.
T Consensus 209 ~l~~~~~~~~GliLvtGpTGSGKTTtL~a 237 (462)
T PRK10436 209 QFRQALQQPQGLILVTGPTGSGKTVTLYS 237 (462)
T ss_pred HHHHHHHhcCCeEEEECCCCCChHHHHHH
Confidence 34555667788999999999999999964
No 64
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=86.27 E-value=0.65 Score=44.63 Aligned_cols=49 Identities=14% Similarity=0.211 Sum_probs=30.9
Q ss_pred eeEeecEEecCCCchHHHHHHHHHHHHHHhhcCcceEEEeeCCCCCCccceecC
Q 047385 45 FKFGFDRVFYEKSEQAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 45 ~~F~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm~G 98 (483)
..|+||..+... . +.++.. ++.++.. .+.+..++-||++|+||||.+..
T Consensus 13 ~~~~~d~f~~~~-~-~~~~~~-l~~~~~~--~~~~~~~~l~G~~G~GKT~La~a 61 (227)
T PRK08903 13 PPPTFDNFVAGE-N-AELVAR-LRELAAG--PVADRFFYLWGEAGSGRSHLLQA 61 (227)
T ss_pred ChhhhcccccCC-c-HHHHHH-HHHHHhc--cCCCCeEEEECCCCCCHHHHHHH
Confidence 468899887332 2 334333 4444432 23345788999999999998754
No 65
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=86.12 E-value=0.74 Score=49.23 Aligned_cols=92 Identities=22% Similarity=0.276 Sum_probs=46.9
Q ss_pred EEEEEeCCCCccccccCCCceEEEecCCceEEEeCCCC----------cceeEeecEEecCCCchHHHHHHHHHHHHHHh
Q 047385 5 TVCARFRPLSSKERSNHGDSVCIHGIDNESFIFKDDKE----------ENFKFGFDRVFYEKSEQAEVFEFLALPIIRDA 74 (483)
Q Consensus 5 ~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~F~FD~Vf~~~~~Q~~vf~~~~~plv~~~ 74 (483)
..+|++.+..+.+.-..+..+.+.......+-+.++.. ..-.-+|+.|.+-+..-+++.+.+..|+...-
T Consensus 128 ~~~~~~~~~~~~~~l~~~~~v~l~~~~~~~~~~~~~~~d~~~~~~~~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~ 207 (438)
T PTZ00361 128 EYYVNILSFVDKEQLEPGCSVLLHNKTHSVVGILLDEVDPLVSVMKVDKAPLESYADIGGLEQQIQEIKEAVELPLTHPE 207 (438)
T ss_pred EEEEeccCcCCHhhCCCCCEEEEcCCCCceEecCccccchhhhhcccccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHH
Confidence 57888888887776544444444322222222221110 01113455554444434455555545554321
Q ss_pred -hc--Cc--ceEEEeeCCCCCCcccee
Q 047385 75 -FN--GM--NGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 75 -l~--G~--n~ti~ayG~tgSGKT~Tm 96 (483)
+. |. ...|+-||++|+|||++.
T Consensus 208 ~~~~~gi~~p~gVLL~GPPGTGKT~LA 234 (438)
T PTZ00361 208 LYDDIGIKPPKGVILYGPPGTGKTLLA 234 (438)
T ss_pred HHHhcCCCCCcEEEEECCCCCCHHHHH
Confidence 11 21 124777999999999875
No 66
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=85.96 E-value=0.71 Score=45.39 Aligned_cols=130 Identities=15% Similarity=0.232 Sum_probs=72.0
Q ss_pred eEeecEEecCCCchHHHHHHHHHHHHHHhhcCcceE-EEeeCCCCCCccceecCCCCCCccccccCchhhhHHHHHHhhh
Q 047385 46 KFGFDRVFYEKSEQAEVFEFLALPIIRDAFNGMNGT-VITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTVDELFDCMK 124 (483)
Q Consensus 46 ~F~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~t-i~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~i~ 124 (483)
...+|...+-+...+.+.+.+ ..+++|..+- ++.||..|+|||.++-. ++....
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt-----~~Fl~G~pannvLL~G~rGtGKSSlVka--------------------ll~~y~ 77 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENT-----EQFLQGLPANNVLLWGARGTGKSSLVKA--------------------LLNEYA 77 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHH-----HHHHcCCCCcceEEecCCCCCHHHHHHH--------------------HHHHHh
Confidence 345666666655555555554 5677777663 67799999999877533 333333
Q ss_pred cCCCCcEEEEEEeEEEEecceeecccCCCCCcceeeeccC-CceEecCcEEEEec-CHHHHHHHHHhhhhccCcccccCC
Q 047385 125 SSDASVKFTIKLSMVEIYMEKVRDLFDLSRDNIQIKESRV-QGILLSGVTEIYVF-NSAEALQSLASGISNRAVGETQMN 202 (483)
Q Consensus 125 ~~~~~~~~~v~vS~~EIyne~v~DLL~~~~~~l~i~e~~~-~g~~v~gl~~~~v~-s~~e~~~ll~~g~~~R~~~~t~~n 202 (483)
... +-.+||..+.+.||-.--. .++..+. -=+++.+|+--.-. +...+..+|+-|... ........
T Consensus 78 ~~G--------LRlIev~k~~L~~l~~l~~---~l~~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~-~P~Nvliy 145 (249)
T PF05673_consen 78 DQG--------LRLIEVSKEDLGDLPELLD---LLRDRPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEA-RPDNVLIY 145 (249)
T ss_pred hcC--------ceEEEECHHHhccHHHHHH---HHhcCCCCEEEEecCCCCCCCcHHHHHHHHHhcCcccc-CCCcEEEE
Confidence 321 5678888887766642100 0111111 12344455533322 234455555555443 35666677
Q ss_pred CCCCCceEEE
Q 047385 203 MASSRSHCIY 212 (483)
Q Consensus 203 ~~SSRSH~if 212 (483)
++|.|-|.|=
T Consensus 146 ATSNRRHLv~ 155 (249)
T PF05673_consen 146 ATSNRRHLVP 155 (249)
T ss_pred Eecchhhccc
Confidence 7888888873
No 67
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=85.92 E-value=0.69 Score=45.77 Aligned_cols=51 Identities=22% Similarity=0.214 Sum_probs=33.7
Q ss_pred eeEeecEEecCCCchHHHHHHHHHHHHHHhhcCcceEEEeeCCCCCCccceecC
Q 047385 45 FKFGFDRVFYEKSEQAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 45 ~~F~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm~G 98 (483)
++|.|..+=.....+..+|.... .++..+-.|.| ++-||++|+||||...+
T Consensus 74 k~~~~~d~~~~~~~~~~~l~~~~-~~~~~~~~~~n--l~l~G~~G~GKThLa~A 124 (254)
T COG1484 74 KTFEEFDFEFQPGIDKKALEDLA-SLVEFFERGEN--LVLLGPPGVGKTHLAIA 124 (254)
T ss_pred CCcccccccCCcchhHHHHHHHH-HHHHHhccCCc--EEEECCCCCcHHHHHHH
Confidence 44554444444556777887744 56655555555 45699999999999865
No 68
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=85.26 E-value=0.37 Score=53.24 Aligned_cols=29 Identities=34% Similarity=0.536 Sum_probs=24.2
Q ss_pred HHHHhhcCcceEEEeeCCCCCCccceecC
Q 047385 70 IIRDAFNGMNGTVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 70 lv~~~l~G~n~ti~ayG~tgSGKT~Tm~G 98 (483)
.+..++..-++.|+..|+||||||.||..
T Consensus 307 ~l~~~~~~~~Glilv~G~tGSGKTTtl~a 335 (564)
T TIGR02538 307 LFLEAIHKPQGMVLVTGPTGSGKTVSLYT 335 (564)
T ss_pred HHHHHHHhcCCeEEEECCCCCCHHHHHHH
Confidence 45566677788999999999999999865
No 69
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=84.52 E-value=0.51 Score=51.16 Aligned_cols=29 Identities=24% Similarity=0.408 Sum_probs=23.6
Q ss_pred HHHHhhcCcceEEEeeCCCCCCccceecC
Q 047385 70 IIRDAFNGMNGTVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 70 lv~~~l~G~n~ti~ayG~tgSGKT~Tm~G 98 (483)
.+..++..-++.|+..|+||||||.||..
T Consensus 233 ~l~~~~~~~~GlilitGptGSGKTTtL~a 261 (486)
T TIGR02533 233 RFERLIRRPHGIILVTGPTGSGKTTTLYA 261 (486)
T ss_pred HHHHHHhcCCCEEEEEcCCCCCHHHHHHH
Confidence 44556677777899999999999999964
No 70
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=84.14 E-value=0.55 Score=48.50 Aligned_cols=30 Identities=27% Similarity=0.610 Sum_probs=22.5
Q ss_pred HHHHHhhcCcceEEEeeCCCCCCccceecC
Q 047385 69 PIIRDAFNGMNGTVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 69 plv~~~l~G~n~ti~ayG~tgSGKT~Tm~G 98 (483)
|.+..++.--.+.|+..|+||||||+||..
T Consensus 112 ~~l~~~~~~~~g~ili~G~tGSGKTT~l~a 141 (343)
T TIGR01420 112 PVLRELAERPRGLILVTGPTGSGKSTTLAS 141 (343)
T ss_pred HHHHHHHhhcCcEEEEECCCCCCHHHHHHH
Confidence 445555544457788999999999999854
No 71
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=83.97 E-value=0.43 Score=40.48 Aligned_cols=17 Identities=35% Similarity=0.407 Sum_probs=15.0
Q ss_pred EEeeCCCCCCccceecC
Q 047385 82 VITYGQTGAGKTFSMEG 98 (483)
Q Consensus 82 i~ayG~tgSGKT~Tm~G 98 (483)
++.+|+||||||+++..
T Consensus 3 ~~i~~~~G~GKT~~~~~ 19 (144)
T cd00046 3 VLLAAPTGSGKTLAALL 19 (144)
T ss_pred EEEECCCCCchhHHHHH
Confidence 56799999999999876
No 72
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=83.94 E-value=0.91 Score=47.42 Aligned_cols=25 Identities=36% Similarity=0.593 Sum_probs=17.8
Q ss_pred HHhhc-CcceEEEeeCCCCCCcccee
Q 047385 72 RDAFN-GMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 72 ~~~l~-G~n~ti~ayG~tgSGKT~Tm 96 (483)
..++. |-...++.||.||+|||.|+
T Consensus 34 ~~~~~~~~p~n~~iyG~~GTGKT~~~ 59 (366)
T COG1474 34 APALRGERPSNIIIYGPTGTGKTATV 59 (366)
T ss_pred HHHhcCCCCccEEEECCCCCCHhHHH
Confidence 33443 33334999999999999875
No 73
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=83.73 E-value=5.6 Score=30.94 Aligned_cols=57 Identities=28% Similarity=0.274 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhcchhhHHHHHHHHHhhh
Q 047385 412 TSLQHMVEDLVRAVEELKSENKALKTRIAAAGKIDAFHKEAGENGYASIVHKISDRLS 469 (483)
Q Consensus 412 ~~~~~~~~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (483)
..+.+.++.|-...++++.||..|+.+...++.+.+....- -..-.+.|..+..||-
T Consensus 3 ~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ek-ne~Ar~rvEamI~RLk 59 (65)
T TIGR02449 3 QALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEK-NEQARQKVEAMITRLK 59 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhh
Confidence 45667788888888999999999999999998887755222 1223445555555554
No 74
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=83.47 E-value=0.64 Score=41.80 Aligned_cols=26 Identities=35% Similarity=0.469 Sum_probs=19.7
Q ss_pred HHHhhcCcceEEEeeCCCCCCccceecC
Q 047385 71 IRDAFNGMNGTVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 71 v~~~l~G~n~ti~ayG~tgSGKT~Tm~G 98 (483)
++.+.+|.| ++..|+||||||+....
T Consensus 8 ~~~i~~~~~--~li~aptGsGKT~~~~~ 33 (169)
T PF00270_consen 8 IEAIISGKN--VLISAPTGSGKTLAYIL 33 (169)
T ss_dssp HHHHHTTSE--EEEECSTTSSHHHHHHH
T ss_pred HHHHHcCCC--EEEECCCCCccHHHHHH
Confidence 344456776 67899999999999765
No 75
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=83.45 E-value=0.47 Score=44.97 Aligned_cols=18 Identities=39% Similarity=0.733 Sum_probs=15.9
Q ss_pred eEEEeeCCCCCCccceec
Q 047385 80 GTVITYGQTGAGKTFSME 97 (483)
Q Consensus 80 ~ti~ayG~tgSGKT~Tm~ 97 (483)
+.|+-.|+||||||+++.
T Consensus 2 GlilI~GptGSGKTTll~ 19 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLA 19 (198)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 578889999999999984
No 76
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=83.44 E-value=0.63 Score=48.46 Aligned_cols=25 Identities=32% Similarity=0.484 Sum_probs=19.9
Q ss_pred hhcCcceEEEeeCCCCCCccceecC
Q 047385 74 AFNGMNGTVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 74 ~l~G~n~ti~ayG~tgSGKT~Tm~G 98 (483)
.+.--++.|+..|+||||||.||..
T Consensus 129 ~~~~~~glilI~GpTGSGKTTtL~a 153 (358)
T TIGR02524 129 AIAPQEGIVFITGATGSGKSTLLAA 153 (358)
T ss_pred HHhccCCEEEEECCCCCCHHHHHHH
Confidence 3444568899999999999999854
No 77
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=83.15 E-value=0.68 Score=48.47 Aligned_cols=28 Identities=21% Similarity=0.387 Sum_probs=20.1
Q ss_pred HHHHhhcCcceEEEeeCCCCCCccceecC
Q 047385 70 IIRDAFNGMNGTVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 70 lv~~~l~G~n~ti~ayG~tgSGKT~Tm~G 98 (483)
+++.++. .++.|+..|+||||||+||..
T Consensus 141 ~~~~l~~-~~GlilI~G~TGSGKTT~l~a 168 (372)
T TIGR02525 141 LFNSLLP-AAGLGLICGETGSGKSTLAAS 168 (372)
T ss_pred HHHHHHh-cCCEEEEECCCCCCHHHHHHH
Confidence 3444433 456788899999999999843
No 78
>PRK06921 hypothetical protein; Provisional
Probab=82.96 E-value=0.96 Score=45.07 Aligned_cols=32 Identities=25% Similarity=0.427 Sum_probs=22.2
Q ss_pred HHHHHHHhhc---CcceEEEeeCCCCCCccceecC
Q 047385 67 ALPIIRDAFN---GMNGTVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 67 ~~plv~~~l~---G~n~ti~ayG~tgSGKT~Tm~G 98 (483)
+...++.+-. +..-.++-||++|+||||.+..
T Consensus 102 ~~~~~~~f~~~~~~~~~~l~l~G~~G~GKThLa~a 136 (266)
T PRK06921 102 AVEYVKDFEKIQESRKNSIALLGQPGSGKTHLLTA 136 (266)
T ss_pred HHHHHHHHHHhcccCCCeEEEECCCCCcHHHHHHH
Confidence 4455665532 2234578899999999999865
No 79
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=82.94 E-value=0.4 Score=41.35 Aligned_cols=18 Identities=28% Similarity=0.486 Sum_probs=12.8
Q ss_pred ceEEEeeCCCCCCcccee
Q 047385 79 NGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 79 n~ti~ayG~tgSGKT~Tm 96 (483)
+.+++.+|++|+|||.++
T Consensus 4 ~~~~~i~G~~G~GKT~~~ 21 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLI 21 (131)
T ss_dssp ---EEEEE-TTSSHHHHH
T ss_pred CcccEEEcCCCCCHHHHH
Confidence 346889999999999876
No 80
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=82.85 E-value=0.55 Score=46.44 Aligned_cols=19 Identities=37% Similarity=0.686 Sum_probs=15.8
Q ss_pred ceEEEeeCCCCCCccceec
Q 047385 79 NGTVITYGQTGAGKTFSME 97 (483)
Q Consensus 79 n~ti~ayG~tgSGKT~Tm~ 97 (483)
.+.|+..|+||||||.+|.
T Consensus 127 ~~~ili~G~tGSGKTT~l~ 145 (270)
T PF00437_consen 127 RGNILISGPTGSGKTTLLN 145 (270)
T ss_dssp TEEEEEEESTTSSHHHHHH
T ss_pred ceEEEEECCCccccchHHH
Confidence 5567778999999999983
No 81
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=82.70 E-value=0.9 Score=45.16 Aligned_cols=35 Identities=37% Similarity=0.536 Sum_probs=27.2
Q ss_pred HHHHH-HHHHHHhhcCcceEEEeeCCCCCCccceec
Q 047385 63 FEFLA-LPIIRDAFNGMNGTVITYGQTGAGKTFSME 97 (483)
Q Consensus 63 f~~~~-~plv~~~l~G~n~ti~ayG~tgSGKT~Tm~ 97 (483)
|++.- .|+++++.--.-+.|+..|+|||||+.||-
T Consensus 110 ~eeL~LPevlk~la~~kRGLviiVGaTGSGKSTtmA 145 (375)
T COG5008 110 FEELKLPEVLKDLALAKRGLVIIVGATGSGKSTTMA 145 (375)
T ss_pred HHhcCCcHHHHHhhcccCceEEEECCCCCCchhhHH
Confidence 44433 466777777788889999999999999984
No 82
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=82.54 E-value=0.53 Score=39.80 Aligned_cols=19 Identities=26% Similarity=0.454 Sum_probs=15.8
Q ss_pred eEEEeeCCCCCCccceecC
Q 047385 80 GTVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 80 ~ti~ayG~tgSGKT~Tm~G 98 (483)
..++-+|++|||||+++..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~ 21 (148)
T smart00382 3 EVILIVGPPGSGKTTLARA 21 (148)
T ss_pred CEEEEECCCCCcHHHHHHH
Confidence 3577899999999999854
No 83
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=82.47 E-value=1.1 Score=48.14 Aligned_cols=53 Identities=19% Similarity=0.271 Sum_probs=33.8
Q ss_pred cceeEeecEEecCCCchHHHHHHHHHHHHHHh--hcC--cceEEEeeCCCCCCccceecC
Q 047385 43 ENFKFGFDRVFYEKSEQAEVFEFLALPIIRDA--FNG--MNGTVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 43 ~~~~F~FD~Vf~~~~~Q~~vf~~~~~plv~~~--l~G--~n~ti~ayG~tgSGKT~Tm~G 98 (483)
-+..|+||.-.... ++...|.. +..+.+.. ..| +|. ++-||++|+||||.+..
T Consensus 104 l~~~~tFdnFv~g~-~N~~a~~~-a~~~a~~~~~~~~~~~np-l~L~G~~G~GKTHLl~A 160 (445)
T PRK12422 104 LDPLMTFANFLVTP-ENDLPHRI-LQEFTKVSEQGKGFPFNP-IYLFGPEGSGKTHLMQA 160 (445)
T ss_pred CCccccccceeeCC-cHHHHHHH-HHHHHhccccccCCCCce-EEEEcCCCCCHHHHHHH
Confidence 34679999877543 45545543 44444332 223 454 67799999999999865
No 84
>PRK09183 transposase/IS protein; Provisional
Probab=82.01 E-value=0.88 Score=45.14 Aligned_cols=21 Identities=29% Similarity=0.465 Sum_probs=16.7
Q ss_pred cCcceEEEeeCCCCCCccceecC
Q 047385 76 NGMNGTVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 76 ~G~n~ti~ayG~tgSGKT~Tm~G 98 (483)
.|.| |+-+|++|+||||.+.+
T Consensus 101 ~~~~--v~l~Gp~GtGKThLa~a 121 (259)
T PRK09183 101 RNEN--IVLLGPSGVGKTHLAIA 121 (259)
T ss_pred cCCe--EEEEeCCCCCHHHHHHH
Confidence 4555 55699999999999865
No 85
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=81.41 E-value=1.1 Score=47.24 Aligned_cols=51 Identities=27% Similarity=0.454 Sum_probs=29.8
Q ss_pred eEeecEEecCCCchHHHHHHHHHHHHH-Hhhc--C--cceEEEeeCCCCCCcccee
Q 047385 46 KFGFDRVFYEKSEQAEVFEFLALPIIR-DAFN--G--MNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 46 ~F~FD~Vf~~~~~Q~~vf~~~~~plv~-~~l~--G--~n~ti~ayG~tgSGKT~Tm 96 (483)
.++||.|-+-+..-+++.+.+..|+.. ..+. | ....|+-||++|+|||+..
T Consensus 127 ~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 127 NVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHH
Confidence 355565555444445555555455543 2222 2 2335888999999999774
No 86
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=81.39 E-value=0.8 Score=43.35 Aligned_cols=27 Identities=22% Similarity=0.404 Sum_probs=18.6
Q ss_pred HHHhhcCcceEEEeeCCCCCCccceec
Q 047385 71 IRDAFNGMNGTVITYGQTGAGKTFSME 97 (483)
Q Consensus 71 v~~~l~G~n~ti~ayG~tgSGKT~Tm~ 97 (483)
+..++...+..++..|+.||||||+|.
T Consensus 10 ~~~~l~~~~~~~~l~G~aGtGKT~~l~ 36 (196)
T PF13604_consen 10 VRAILTSGDRVSVLQGPAGTGKTTLLK 36 (196)
T ss_dssp HHHHHHCTCSEEEEEESTTSTHHHHHH
T ss_pred HHHHHhcCCeEEEEEECCCCCHHHHHH
Confidence 344444444445568999999999873
No 87
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=81.23 E-value=2.2 Score=41.91 Aligned_cols=53 Identities=21% Similarity=0.196 Sum_probs=32.6
Q ss_pred ecCHHHHHHHHHhhhhccCcccccCCCCCCCceEEEEEEEEEeecccceeEeeeeeeeeCCCCccc
Q 047385 177 VFNSAEALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQELTKEKRVKAGKLLLVDLAGSEKA 242 (483)
Q Consensus 177 v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~skL~~VDLAGsEr~ 242 (483)
+.+++++...+...... ..+. + ..-|.-++.+.+.... ...|+||||+|-.+.
T Consensus 86 ~~~~~~v~~~i~~~~~~-~~~~---~--~~~s~~~i~l~i~~p~-------~~~ltLIDlPGl~~~ 138 (240)
T smart00053 86 FTDFDEVRNEIEAETDR-VTGT---N--KGISPVPINLRVYSPH-------VLNLTLIDLPGITKV 138 (240)
T ss_pred cCCHHHHHHHHHHHHHH-hcCC---C--CcccCcceEEEEeCCC-------CCceEEEeCCCcccc
Confidence 35778888887765432 1111 1 1235557777776542 347999999999644
No 88
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=81.20 E-value=1.3 Score=44.86 Aligned_cols=36 Identities=19% Similarity=0.277 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHhhcC-cceEEEeeCCCCCCccceec
Q 047385 62 VFEFLALPIIRDAFNG-MNGTVITYGQTGAGKTFSME 97 (483)
Q Consensus 62 vf~~~~~plv~~~l~G-~n~ti~ayG~tgSGKT~Tm~ 97 (483)
++++.+-.++...+.+ .---.+-|||.|+|||.|..
T Consensus 39 ~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStal 75 (346)
T KOG0989|consen 39 AGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTAL 75 (346)
T ss_pred cchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHH
Confidence 3444444444455544 33345679999999999963
No 89
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=81.03 E-value=12 Score=29.70 Aligned_cols=37 Identities=35% Similarity=0.324 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 047385 409 QTITSLQHMVEDLVRAVEELKSENKALKTRIAAAGKI 445 (483)
Q Consensus 409 ~~~~~~~~~~~~l~~~~~~~~~e~~~l~~~~~~~~~~ 445 (483)
..|..|+..+++|+.+...+..++..|+.+.+++..+
T Consensus 18 eti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e 54 (72)
T PF06005_consen 18 ETIALLQMENEELKEKNNELKEENEELKEENEQLKQE 54 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3566677777888888777777787787777776644
No 90
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=80.87 E-value=0.86 Score=45.34 Aligned_cols=29 Identities=31% Similarity=0.556 Sum_probs=21.7
Q ss_pred HHHHhhcCcceEEEeeCCCCCCccceecC
Q 047385 70 IIRDAFNGMNGTVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 70 lv~~~l~G~n~ti~ayG~tgSGKT~Tm~G 98 (483)
.+..++..-.+.|+-.|+||||||.+|..
T Consensus 71 ~l~~~~~~~~GlilisG~tGSGKTT~l~a 99 (264)
T cd01129 71 IFRKLLEKPHGIILVTGPTGSGKTTTLYS 99 (264)
T ss_pred HHHHHHhcCCCEEEEECCCCCcHHHHHHH
Confidence 34455555566788899999999999853
No 91
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=80.17 E-value=2.2 Score=48.85 Aligned_cols=53 Identities=26% Similarity=0.373 Sum_probs=32.5
Q ss_pred HHHhhcCcceEEEeeCCCCCCccceecCCCCCCccccccCchhhhHHHHHHhhhcCCCCcEEEEEEeEEE
Q 047385 71 IRDAFNGMNGTVITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTVDELFDCMKSSDASVKFTIKLSMVE 140 (483)
Q Consensus 71 v~~~l~G~n~ti~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~E 140 (483)
+..+.+|.|+.|.| |||||||-+- ++| +++.|+..-.......-+.+++|=+-
T Consensus 31 ~~~i~~G~nvLiiA--PTGsGKTeAA--------------fLp-il~~l~~~~~~~~~~~i~~lYIsPLk 83 (814)
T COG1201 31 IPEIHSGENVLIIA--PTGSGKTEAA--------------FLP-VINELLSLGKGKLEDGIYALYISPLK 83 (814)
T ss_pred HHHHhCCCceEEEc--CCCCChHHHH--------------HHH-HHHHHHhccCCCCCCceEEEEeCcHH
Confidence 34556999998877 9999999773 444 55666654211112334566665443
No 92
>PF12846 AAA_10: AAA-like domain
Probab=79.26 E-value=0.76 Score=45.35 Aligned_cols=20 Identities=35% Similarity=0.581 Sum_probs=16.4
Q ss_pred ceEEEeeCCCCCCccceecC
Q 047385 79 NGTVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 79 n~ti~ayG~tgSGKT~Tm~G 98 (483)
|.-++..|.||||||++|..
T Consensus 1 n~h~~i~G~tGsGKT~~~~~ 20 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKN 20 (304)
T ss_pred CCeEEEECCCCCcHHHHHHH
Confidence 45578899999999998853
No 93
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=79.21 E-value=1 Score=42.43 Aligned_cols=29 Identities=24% Similarity=0.390 Sum_probs=20.3
Q ss_pred HHHHHhhcCcceEEEeeCCCCCCccceec
Q 047385 69 PIIRDAFNGMNGTVITYGQTGAGKTFSME 97 (483)
Q Consensus 69 plv~~~l~G~n~ti~ayG~tgSGKT~Tm~ 97 (483)
.+...+-.|.+..++.||+.|+|||+.|.
T Consensus 10 ~l~~~l~~~~~~~~~l~G~rg~GKTsLl~ 38 (234)
T PF01637_consen 10 KLKELLESGPSQHILLYGPRGSGKTSLLK 38 (234)
T ss_dssp HHHHCHHH--SSEEEEEESTTSSHHHHHH
T ss_pred HHHHHHHhhcCcEEEEEcCCcCCHHHHHH
Confidence 33343445667889999999999998763
No 94
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=79.21 E-value=0.76 Score=44.20 Aligned_cols=16 Identities=31% Similarity=0.752 Sum_probs=13.2
Q ss_pred EEeeCCCCCCccceec
Q 047385 82 VITYGQTGAGKTFSME 97 (483)
Q Consensus 82 i~ayG~tgSGKT~Tm~ 97 (483)
+..+|.||||||+|+.
T Consensus 26 ~~I~G~TGsGKS~~~~ 41 (229)
T PF01935_consen 26 IAIFGTTGSGKSNTVK 41 (229)
T ss_pred EEEECCCCCCHHHHHH
Confidence 3457999999999984
No 95
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=78.76 E-value=1.5 Score=50.51 Aligned_cols=22 Identities=32% Similarity=0.459 Sum_probs=17.8
Q ss_pred cCcceEEEeeCCCCCCccceec
Q 047385 76 NGMNGTVITYGQTGAGKTFSME 97 (483)
Q Consensus 76 ~G~n~ti~ayG~tgSGKT~Tm~ 97 (483)
.|-+.+++.||++|+|||.|+-
T Consensus 778 sgpnnvLYIyG~PGTGKTATVK 799 (1164)
T PTZ00112 778 SGSNQILYISGMPGTGKTATVY 799 (1164)
T ss_pred CCCCceEEEECCCCCCHHHHHH
Confidence 3555678899999999999863
No 96
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=78.57 E-value=1.9 Score=44.58 Aligned_cols=91 Identities=16% Similarity=0.279 Sum_probs=51.1
Q ss_pred eEEEEEeCCCCccccccCCCceEEEecCCceEEEeCCCCc----------ceeEeecEEecCCCchHHHHHHHHHHHHH-
Q 047385 4 ITVCARFRPLSSKERSNHGDSVCIHGIDNESFIFKDDKEE----------NFKFGFDRVFYEKSEQAEVFEFLALPIIR- 72 (483)
Q Consensus 4 i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~F~FD~Vf~~~~~Q~~vf~~~~~plv~- 72 (483)
-+.+|++.|.-+++.-..+..+++..-.-.-+.+.++... .-.-+|+.|=+-+..-+++.+.+-.||..
T Consensus 95 ~~~vV~i~~~vd~~~L~pG~rVal~~~s~~Iv~vLp~~~Dp~V~~M~v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~P 174 (406)
T COG1222 95 PKFVVNILSFVDRDLLEPGMRVALNRDSYSIVRVLPPEVDPRVSVMEVEEKPDVTYEDIGGLDEQIQEIREVVELPLKNP 174 (406)
T ss_pred CeEEEeccCCcCHHHcCCCCEEEEcCCcceeeeeCCCccCchhheeeeccCCCCChhhccCHHHHHHHHHHHhcccccCH
Confidence 4678888888887766555555553222212222222111 11234455544444446677777777763
Q ss_pred Hhhc--Ccce--EEEeeCCCCCCccc
Q 047385 73 DAFN--GMNG--TVITYGQTGAGKTF 94 (483)
Q Consensus 73 ~~l~--G~n~--ti~ayG~tgSGKT~ 94 (483)
..|+ |..- -|+-||++|+|||-
T Consensus 175 ElF~~~GI~PPKGVLLYGPPGTGKTL 200 (406)
T COG1222 175 ELFEELGIDPPKGVLLYGPPGTGKTL 200 (406)
T ss_pred HHHHHcCCCCCCceEeeCCCCCcHHH
Confidence 2332 5543 48899999999974
No 97
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=78.46 E-value=1.6 Score=45.50 Aligned_cols=37 Identities=30% Similarity=0.451 Sum_probs=27.9
Q ss_pred CCchHHHHHHHHHHHHHHhhcCcceEEEeeCCCCCCcccee
Q 047385 56 KSEQAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 56 ~~~Q~~vf~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm 96 (483)
+..|..+|+.+...+.. .+| ..+|.-|+.|+||||.+
T Consensus 3 n~eQ~~~~~~v~~~~~~--~~~--~~~fv~G~~GtGKs~l~ 39 (364)
T PF05970_consen 3 NEEQRRVFDTVIEAIEN--EEG--LNFFVTGPAGTGKSFLI 39 (364)
T ss_pred CHHHHHHHHHHHHHHHc--cCC--cEEEEEcCCCCChhHHH
Confidence 35799999998754433 344 45688999999999986
No 98
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=78.24 E-value=1.6 Score=40.80 Aligned_cols=18 Identities=39% Similarity=0.639 Sum_probs=15.8
Q ss_pred EEEeeCCCCCCccceecC
Q 047385 81 TVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm~G 98 (483)
.++-+|++|+||||...+
T Consensus 49 ~l~l~G~~G~GKThLa~a 66 (178)
T PF01695_consen 49 NLILYGPPGTGKTHLAVA 66 (178)
T ss_dssp EEEEEESTTSSHHHHHHH
T ss_pred EEEEEhhHhHHHHHHHHH
Confidence 478899999999999866
No 99
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=77.97 E-value=1.1 Score=45.38 Aligned_cols=29 Identities=28% Similarity=0.448 Sum_probs=21.0
Q ss_pred HHHHHHhhcCcceEEEeeCCCCCCccceec
Q 047385 68 LPIIRDAFNGMNGTVITYGQTGAGKTFSME 97 (483)
Q Consensus 68 ~plv~~~l~G~n~ti~ayG~tgSGKT~Tm~ 97 (483)
..++..++.+ ...|+..|+||||||++|.
T Consensus 122 ~~~L~~~v~~-~~~ilI~G~tGSGKTTll~ 150 (299)
T TIGR02782 122 RDVLREAVLA-RKNILVVGGTGSGKTTLAN 150 (299)
T ss_pred HHHHHHHHHc-CCeEEEECCCCCCHHHHHH
Confidence 3455555654 3467789999999999874
No 100
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=77.81 E-value=0.96 Score=38.71 Aligned_cols=15 Identities=33% Similarity=0.521 Sum_probs=13.1
Q ss_pred EEeeCCCCCCcccee
Q 047385 82 VITYGQTGAGKTFSM 96 (483)
Q Consensus 82 i~ayG~tgSGKT~Tm 96 (483)
|+-||++|+|||+..
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 577999999999875
No 101
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=77.65 E-value=26 Score=37.19 Aligned_cols=69 Identities=13% Similarity=0.136 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchh---hhhhhcchhhHHHHHHHHHhhhhcccccc
Q 047385 408 LQTITSLQHMVEDLVRAVEELKSENKALKTRIAAAGKIDA---FHKEAGENGYASIVHKISDRLSHLVSWIW 476 (483)
Q Consensus 408 ~~~~~~~~~~~~~l~~~~~~~~~e~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (483)
.....+++..+++..+.+++++++|+.|.+.......-.+ ......-..+..++..|+++|-|||=+++
T Consensus 381 e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDlmf~le 452 (493)
T KOG0804|consen 381 ERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRDLMFFLE 452 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHheehh
Confidence 3455667777888888888888888887665443332211 11122335588999999999999996654
No 102
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=77.33 E-value=22 Score=29.76 Aligned_cols=76 Identities=28% Similarity=0.373 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhcccccCCCchhhhh---H----HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047385 361 MERILNKLRERLDVENVNLLEELFIMEGIILDPNSVEDLD---L----AFEDVTLQTITSLQHMVEDLVRAVEELKSENK 433 (483)
Q Consensus 361 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~ 433 (483)
+...+.+++.++ ..+...+....|--+...+++++. . ++..++..+..-+.+.++.++.+...+..+|.
T Consensus 17 ~~~e~~~L~~~~----~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~en~ 92 (100)
T PF01486_consen 17 LQQEIAKLRKEN----ESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEEENN 92 (100)
T ss_pred HHHHHHHHHHHH----HHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444554433 333344444455444444444433 2 23344556666778899999999999999999
Q ss_pred HHHHHHH
Q 047385 434 ALKTRIA 440 (483)
Q Consensus 434 ~l~~~~~ 440 (483)
.|+.+++
T Consensus 93 ~L~~~~~ 99 (100)
T PF01486_consen 93 QLRQKIE 99 (100)
T ss_pred HHHHHhc
Confidence 9998875
No 103
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=77.13 E-value=1 Score=38.40 Aligned_cols=16 Identities=31% Similarity=0.524 Sum_probs=13.8
Q ss_pred EEEeeCCCCCCcccee
Q 047385 81 TVITYGQTGAGKTFSM 96 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm 96 (483)
.|+-.|++|||||+..
T Consensus 1 vI~I~G~~gsGKST~a 16 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLA 16 (121)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 4788999999999874
No 104
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=77.00 E-value=1.3 Score=45.44 Aligned_cols=28 Identities=29% Similarity=0.394 Sum_probs=19.5
Q ss_pred HHHHHhhcCcceEEEeeCCCCCCccceec
Q 047385 69 PIIRDAFNGMNGTVITYGQTGAGKTFSME 97 (483)
Q Consensus 69 plv~~~l~G~n~ti~ayG~tgSGKT~Tm~ 97 (483)
.++..++.+. ..|+..|.||||||++|.
T Consensus 139 ~~L~~~v~~~-~~ilI~G~tGSGKTTll~ 166 (319)
T PRK13894 139 EAIIAAVRAH-RNILVIGGTGSGKTTLVN 166 (319)
T ss_pred HHHHHHHHcC-CeEEEECCCCCCHHHHHH
Confidence 4555555543 456667999999997763
No 105
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=76.81 E-value=1.4 Score=41.52 Aligned_cols=27 Identities=26% Similarity=0.474 Sum_probs=17.0
Q ss_pred HHHhhcCcceEEEeeCCCCCCccceecC
Q 047385 71 IRDAFNGMNGTVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 71 v~~~l~G~n~ti~ayG~tgSGKT~Tm~G 98 (483)
|..++.--. ..+..|+.|||||+|+..
T Consensus 10 i~~~~~~~~-~~~i~GpPGTGKT~~l~~ 36 (236)
T PF13086_consen 10 IQSALSSNG-ITLIQGPPGTGKTTTLAS 36 (236)
T ss_dssp HHHHCTSSE--EEEE-STTSSHHHHHHH
T ss_pred HHHHHcCCC-CEEEECCCCCChHHHHHH
Confidence 444453333 455689999999998755
No 106
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=76.71 E-value=1.4 Score=38.98 Aligned_cols=15 Identities=47% Similarity=0.758 Sum_probs=12.2
Q ss_pred EEEe-eCCCCCCccce
Q 047385 81 TVIT-YGQTGAGKTFS 95 (483)
Q Consensus 81 ti~a-yG~tgSGKT~T 95 (483)
.|++ .|+||+||||+
T Consensus 54 LVlSfHG~tGtGKn~v 69 (127)
T PF06309_consen 54 LVLSFHGWTGTGKNFV 69 (127)
T ss_pred EEEEeecCCCCcHHHH
Confidence 4555 49999999997
No 107
>PF13479 AAA_24: AAA domain
Probab=76.26 E-value=1.2 Score=42.61 Aligned_cols=20 Identities=30% Similarity=0.496 Sum_probs=16.7
Q ss_pred ceEEEeeCCCCCCccceecC
Q 047385 79 NGTVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 79 n~ti~ayG~tgSGKT~Tm~G 98 (483)
+..++.||++|+|||++...
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~ 22 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAAS 22 (213)
T ss_pred ceEEEEECCCCCCHHHHHHh
Confidence 34678899999999998765
No 108
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=76.00 E-value=4 Score=40.41 Aligned_cols=124 Identities=19% Similarity=0.250 Sum_probs=65.4
Q ss_pred EEEEEeCCCCccccccCCCceEEEecCCceEEEeCCC----------CcceeEeecEEecCCCchHHHHHHHHHHHHHHh
Q 047385 5 TVCARFRPLSSKERSNHGDSVCIHGIDNESFIFKDDK----------EENFKFGFDRVFYEKSEQAEVFEFLALPIIRDA 74 (483)
Q Consensus 5 ~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~F~FD~Vf~~~~~Q~~vf~~~~~plv~~~ 74 (483)
.-+||+-...++|......++.++.-++-.+-+.+|. .+.-.-+|..|=+-+..-++|-+.+-.|+...-
T Consensus 100 ny~vrilstidrellkps~svalhrhsnalvdvlppeadssi~ml~~~ekpdvsy~diggld~qkqeireavelplt~~~ 179 (408)
T KOG0727|consen 100 NYYVRILSTIDRELLKPSASVALHRHSNALVDVLPPEADSSISMLGPDEKPDVSYADIGGLDVQKQEIREAVELPLTHAD 179 (408)
T ss_pred ceEEeehhhhhHHHcCCccchhhhhcccceeeccCCcccccccccCCCCCCCccccccccchhhHHHHHHHHhccchHHH
Confidence 3578888888888754333333322222222222221 011123334454545545566666656666543
Q ss_pred h---cCcce--EEEeeCCCCCCccceecCCCCCC--------cc---ccccCchhhhHHHHHHhhhcCCC
Q 047385 75 F---NGMNG--TVITYGQTGAGKTFSMEGPSILA--------CD---EQKKGLLQRTVDELFDCMKSSDA 128 (483)
Q Consensus 75 l---~G~n~--ti~ayG~tgSGKT~Tm~G~~~~~--------~~---~~~~Giipr~~~~LF~~i~~~~~ 128 (483)
+ -|..- .|+.||+.|+|||-..-.-.... ++ ..--|=-||.++++|...+++.+
T Consensus 180 ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylgegprmvrdvfrlakenap 249 (408)
T KOG0727|consen 180 LYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAP 249 (408)
T ss_pred HHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCcHHHHHHHHHHhccCC
Confidence 3 14332 48899999999985432100000 00 01236669999999988877643
No 109
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=75.94 E-value=1.7 Score=42.54 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=17.7
Q ss_pred HhhcCcceEEEeeCCCCCCcccee
Q 047385 73 DAFNGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 73 ~~l~G~n~ti~ayG~tgSGKT~Tm 96 (483)
..+......++-+|++|+|||+++
T Consensus 37 ~~~~~~~~~~~l~G~~G~GKTtl~ 60 (269)
T TIGR03015 37 YGLSQREGFILITGEVGAGKTTLI 60 (269)
T ss_pred HHHhcCCCEEEEEcCCCCCHHHHH
Confidence 334434556788999999999876
No 110
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=75.77 E-value=1 Score=42.70 Aligned_cols=18 Identities=33% Similarity=0.529 Sum_probs=14.9
Q ss_pred EEEeeCCCCCCccceecC
Q 047385 81 TVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm~G 98 (483)
.|+-.|+||+|||.|+.-
T Consensus 3 vi~lvGptGvGKTTt~aK 20 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAK 20 (196)
T ss_dssp EEEEEESTTSSHHHHHHH
T ss_pred EEEEECCCCCchHhHHHH
Confidence 467789999999999743
No 111
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=74.90 E-value=1 Score=41.15 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=12.9
Q ss_pred hcCcceEEEeeCCCCCCcccee
Q 047385 75 FNGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 75 l~G~n~ti~ayG~tgSGKT~Tm 96 (483)
..|....++.+|.+|+|||+.+
T Consensus 20 ~~~~~~~~ll~G~~G~GKT~ll 41 (185)
T PF13191_consen 20 QSGSPRNLLLTGESGSGKTSLL 41 (185)
T ss_dssp SS-----EEE-B-TTSSHHHHH
T ss_pred HcCCCcEEEEECCCCCCHHHHH
Confidence 3566778999999999999875
No 112
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=74.63 E-value=11 Score=29.77 Aligned_cols=36 Identities=31% Similarity=0.432 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCc
Q 047385 410 TITSLQHMVEDLVRAVEELKSENKALKTRIAAA-GKI 445 (483)
Q Consensus 410 ~~~~~~~~~~~l~~~~~~~~~e~~~l~~~~~~~-~~~ 445 (483)
.+.++++.+.+++.++++++.+++.|+.+++.+ ..+
T Consensus 18 ~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~ 54 (80)
T PF04977_consen 18 RYYQLNQEIAELQKEIEELKKENEELKEEIERLKNDP 54 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 345677888999999999999999999999998 433
No 113
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=74.52 E-value=2 Score=40.11 Aligned_cols=28 Identities=25% Similarity=0.374 Sum_probs=18.8
Q ss_pred HHHHHhhcCcceEEEeeCCCCCCccceec
Q 047385 69 PIIRDAFNGMNGTVITYGQTGAGKTFSME 97 (483)
Q Consensus 69 plv~~~l~G~n~ti~ayG~tgSGKT~Tm~ 97 (483)
+++..++.. ...+.-.|++|||||.+|.
T Consensus 16 ~~l~~~v~~-g~~i~I~G~tGSGKTTll~ 43 (186)
T cd01130 16 AYLWLAVEA-RKNILISGGTGSGKTTLLN 43 (186)
T ss_pred HHHHHHHhC-CCEEEEECCCCCCHHHHHH
Confidence 444444543 2345668999999999864
No 114
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=74.02 E-value=2.5 Score=42.89 Aligned_cols=43 Identities=23% Similarity=0.312 Sum_probs=25.9
Q ss_pred eecEEecCCCchHHHHHHHHHHHHHHhhcCcceEEEeeCCCCCCccceecC
Q 047385 48 GFDRVFYEKSEQAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 48 ~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm~G 98 (483)
+||.+.+ |+++.+.+. .++. .|....++-||++|+|||++...
T Consensus 13 ~~~~~~g----~~~~~~~L~-~~~~---~~~~~~lll~Gp~GtGKT~la~~ 55 (337)
T PRK12402 13 LLEDILG----QDEVVERLS-RAVD---SPNLPHLLVQGPPGSGKTAAVRA 55 (337)
T ss_pred cHHHhcC----CHHHHHHHH-HHHh---CCCCceEEEECCCCCCHHHHHHH
Confidence 4666664 444444422 2222 34433578899999999998743
No 115
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=73.75 E-value=4 Score=45.99 Aligned_cols=87 Identities=36% Similarity=0.582 Sum_probs=51.7
Q ss_pred eeEeecEEecCCCchHHHHHHHHHHHHHHhhcCcceEEEeeCCCCCCccceecCCCCCCccccccCchhhhHHHHHHhhh
Q 047385 45 FKFGFDRVFYEKSEQAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTVDELFDCMK 124 (483)
Q Consensus 45 ~~F~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~i~ 124 (483)
..+.|+.+......+..-+.. ..+.+..+.++++.. +|++|++.+.. ...|++-+....+++...
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--------~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 90 (670)
T KOG0239|consen 26 KRFELARVYSPSVGQPSLFSD-VQPFVQSALEGLNVK--------AGLTYTMEGSN------QPGGLLARLFKELIDLAN 90 (670)
T ss_pred cccCccccccccccccccCCc-cccchhhhhhhhhcc--------hhhhhhhhhhc------CcchhHHHhhhhcccccc
Confidence 456677666554433333333 224445555555554 89999999943 345777777766665433
Q ss_pred cCCCCcEEEEEEeEEEEecceeecccCCC
Q 047385 125 SSDASVKFTIKLSMVEIYMEKVRDLFDLS 153 (483)
Q Consensus 125 ~~~~~~~~~v~vS~~EIyne~v~DLL~~~ 153 (483)
... ... .++.|++.+.|++..-
T Consensus 91 ~~~-~~~------~~~~~~~~~~~~~~~~ 112 (670)
T KOG0239|consen 91 SDK-TSN------VVEAYNERLRDLLSEL 112 (670)
T ss_pred cCC-Cch------hHHHHHHHHhhhcccc
Confidence 321 111 5777999999998643
No 116
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=73.37 E-value=2 Score=44.15 Aligned_cols=28 Identities=29% Similarity=0.402 Sum_probs=20.4
Q ss_pred HHHHHhhcCcceEEEeeCCCCCCccceec
Q 047385 69 PIIRDAFNGMNGTVITYGQTGAGKTFSME 97 (483)
Q Consensus 69 plv~~~l~G~n~ti~ayG~tgSGKT~Tm~ 97 (483)
.++..++.+. +.|+..|.||||||+++-
T Consensus 164 ~~L~~av~~r-~NILisGGTGSGKTTlLN 191 (355)
T COG4962 164 KFLRRAVGIR-CNILISGGTGSGKTTLLN 191 (355)
T ss_pred HHHHHHHhhc-eeEEEeCCCCCCHHHHHH
Confidence 3444444444 678889999999999874
No 117
>PHA00729 NTP-binding motif containing protein
Probab=73.28 E-value=3 Score=40.61 Aligned_cols=32 Identities=25% Similarity=0.251 Sum_probs=22.4
Q ss_pred HHHHHHHhhcCcceEEEeeCCCCCCccceecC
Q 047385 67 ALPIIRDAFNGMNGTVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 67 ~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm~G 98 (483)
++.++..+..|--..|+.+|.+|+||||....
T Consensus 5 ~k~~~~~l~~~~f~nIlItG~pGvGKT~LA~a 36 (226)
T PHA00729 5 AKKIVSAYNNNGFVSAVIFGKQGSGKTTYALK 36 (226)
T ss_pred HHHHHHHHhcCCeEEEEEECCCCCCHHHHHHH
Confidence 34455555543334789999999999998654
No 118
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=73.10 E-value=1.7 Score=44.56 Aligned_cols=28 Identities=32% Similarity=0.487 Sum_probs=19.4
Q ss_pred HHHHHhhcCcceEEEeeCCCCCCccceec
Q 047385 69 PIIRDAFNGMNGTVITYGQTGAGKTFSME 97 (483)
Q Consensus 69 plv~~~l~G~n~ti~ayG~tgSGKT~Tm~ 97 (483)
.++..++.+. ..|+..|+||||||++|.
T Consensus 135 ~~L~~~v~~~-~nilI~G~tGSGKTTll~ 162 (323)
T PRK13833 135 SVIRSAIDSR-LNIVISGGTGSGKTTLAN 162 (323)
T ss_pred HHHHHHHHcC-CeEEEECCCCCCHHHHHH
Confidence 4444555432 346789999999999984
No 119
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=72.66 E-value=1.7 Score=38.12 Aligned_cols=16 Identities=31% Similarity=0.511 Sum_probs=13.6
Q ss_pred EEEeeCCCCCCcccee
Q 047385 81 TVITYGQTGAGKTFSM 96 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm 96 (483)
.|+.+|++|||||+..
T Consensus 1 lii~~G~pgsGKSt~a 16 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLA 16 (143)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 3788999999999874
No 120
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.31 E-value=33 Score=26.96 Aligned_cols=17 Identities=29% Similarity=0.352 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 047385 415 QHMVEDLVRAVEELKSE 431 (483)
Q Consensus 415 ~~~~~~l~~~~~~~~~e 431 (483)
+.++++|+.+.+.+..|
T Consensus 24 QmEieELKEknn~l~~e 40 (79)
T COG3074 24 QMEIEELKEKNNSLSQE 40 (79)
T ss_pred HHHHHHHHHHhhHhHHH
Confidence 33344444443333333
No 121
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=71.97 E-value=1.6 Score=43.39 Aligned_cols=21 Identities=24% Similarity=0.458 Sum_probs=15.9
Q ss_pred cceEEEeeCCCCCCccceecC
Q 047385 78 MNGTVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 78 ~n~ti~ayG~tgSGKT~Tm~G 98 (483)
.++.++..|..|||||+||..
T Consensus 12 ~~~~~lV~a~AGSGKT~~l~~ 32 (315)
T PF00580_consen 12 TEGPLLVNAGAGSGKTTTLLE 32 (315)
T ss_dssp -SSEEEEEE-TTSSHHHHHHH
T ss_pred CCCCEEEEeCCCCCchHHHHH
Confidence 666778889999999999754
No 122
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=71.81 E-value=2.8 Score=40.20 Aligned_cols=21 Identities=43% Similarity=0.553 Sum_probs=14.6
Q ss_pred cceEEEeeCCCCCCccceecC
Q 047385 78 MNGTVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 78 ~n~ti~ayG~tgSGKT~Tm~G 98 (483)
.+-.+++.|+.||||||.-..
T Consensus 18 ~~~~v~~~G~AGTGKT~LA~a 38 (205)
T PF02562_consen 18 NNDLVIVNGPAGTGKTFLALA 38 (205)
T ss_dssp H-SEEEEE--TTSSTTHHHHH
T ss_pred hCCeEEEECCCCCcHHHHHHH
Confidence 455789999999999988543
No 123
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=71.52 E-value=26 Score=27.80 Aligned_cols=40 Identities=23% Similarity=0.153 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhh
Q 047385 410 TITSLQHMVEDLVRAVEELKSENKALKTRIAAAGKIDAFH 449 (483)
Q Consensus 410 ~~~~~~~~~~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~ 449 (483)
++..+-..+.-|+..+++++.+|..|+.+...|..+-...
T Consensus 12 ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L 51 (72)
T PF06005_consen 12 KIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQL 51 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3445555666666666666666666666666665554444
No 124
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=71.46 E-value=12 Score=31.88 Aligned_cols=36 Identities=17% Similarity=0.082 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 047385 410 TITSLQHMVEDLVRAVEELKSENKALKTRIAAAGKI 445 (483)
Q Consensus 410 ~~~~~~~~~~~l~~~~~~~~~e~~~l~~~~~~~~~~ 445 (483)
.+.++++.+++++..+++++.+|..|+.+++.++..
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~ 63 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGG 63 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 456778888999999999999999999999998864
No 125
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=70.85 E-value=2.9 Score=42.23 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=17.1
Q ss_pred cCc-ceEEEeeCCCCCCccceecC
Q 047385 76 NGM-NGTVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 76 ~G~-n~ti~ayG~tgSGKT~Tm~G 98 (483)
.|. ...++-||++|+|||+.+..
T Consensus 39 ~~~~~~~lll~G~~G~GKT~la~~ 62 (316)
T PHA02544 39 KGRIPNMLLHSPSPGTGKTTVAKA 62 (316)
T ss_pred cCCCCeEEEeeCcCCCCHHHHHHH
Confidence 443 44666799999999998743
No 126
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=70.80 E-value=2.7 Score=43.32 Aligned_cols=29 Identities=24% Similarity=0.277 Sum_probs=19.6
Q ss_pred HHHHHhhcCcceEEEeeCCCCCCccceecC
Q 047385 69 PIIRDAFNGMNGTVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 69 plv~~~l~G~n~ti~ayG~tgSGKT~Tm~G 98 (483)
.++..++.+. ..|+..|+||||||.+|-.
T Consensus 151 ~~L~~~v~~~-~nili~G~tgSGKTTll~a 179 (332)
T PRK13900 151 EFLEHAVISK-KNIIISGGTSTGKTTFTNA 179 (332)
T ss_pred HHHHHHHHcC-CcEEEECCCCCCHHHHHHH
Confidence 4445455432 3467789999999999843
No 127
>PRK06547 hypothetical protein; Provisional
Probab=70.72 E-value=3.8 Score=38.00 Aligned_cols=28 Identities=32% Similarity=0.296 Sum_probs=18.7
Q ss_pred HHHHHhhcCcceEEEeeCCCCCCcccee
Q 047385 69 PIIRDAFNGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 69 plv~~~l~G~n~ti~ayG~tgSGKT~Tm 96 (483)
.++..+..+.--.|..+|.+|||||+.-
T Consensus 5 ~~~~~~~~~~~~~i~i~G~~GsGKTt~a 32 (172)
T PRK06547 5 LIAARLCGGGMITVLIDGRSGSGKTTLA 32 (172)
T ss_pred HHHHHhhcCCCEEEEEECCCCCCHHHHH
Confidence 3444444444445666799999999864
No 128
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=70.66 E-value=2.8 Score=37.78 Aligned_cols=18 Identities=39% Similarity=0.407 Sum_probs=14.7
Q ss_pred EEEeeCCCCCCccceecC
Q 047385 81 TVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm~G 98 (483)
.++..|++|||||.++..
T Consensus 26 ~~~i~~~~GsGKT~~~~~ 43 (201)
T smart00487 26 DVILAAPTGSGKTLAALL 43 (201)
T ss_pred cEEEECCCCCchhHHHHH
Confidence 446689999999998765
No 129
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=70.46 E-value=64 Score=33.08 Aligned_cols=7 Identities=0% Similarity=0.273 Sum_probs=4.4
Q ss_pred hhhhccC
Q 047385 293 ILQDALG 299 (483)
Q Consensus 293 lLqdsLg 299 (483)
|+++++.
T Consensus 105 Lf~EY~~ 111 (325)
T PF08317_consen 105 LFREYYT 111 (325)
T ss_pred HHHHHHc
Confidence 6666664
No 130
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=69.63 E-value=1.9 Score=44.71 Aligned_cols=29 Identities=28% Similarity=0.397 Sum_probs=19.6
Q ss_pred HHHHHhhcCcceEEEeeCCCCCCccceecC
Q 047385 69 PIIRDAFNGMNGTVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 69 plv~~~l~G~n~ti~ayG~tgSGKT~Tm~G 98 (483)
.++..++.+ ...|+..|+||||||++|..
T Consensus 153 ~~l~~~v~~-~~nilI~G~tGSGKTTll~a 181 (344)
T PRK13851 153 AFLHACVVG-RLTMLLCGPTGSGKTTMSKT 181 (344)
T ss_pred HHHHHHHHc-CCeEEEECCCCccHHHHHHH
Confidence 444444432 23467789999999999854
No 131
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=69.53 E-value=4.1 Score=42.69 Aligned_cols=51 Identities=18% Similarity=0.247 Sum_probs=35.2
Q ss_pred eeEeecEEecCCCchHHHHHHHHHHHHHHhhc--C--cceEEEeeCCCCCCccce
Q 047385 45 FKFGFDRVFYEKSEQAEVFEFLALPIIRDAFN--G--MNGTVITYGQTGAGKTFS 95 (483)
Q Consensus 45 ~~F~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~--G--~n~ti~ayG~tgSGKT~T 95 (483)
..+.||.+.+.-.--..+.+.++..+..+++. | .---+.-||+.|+|||+.
T Consensus 110 ~~~~f~~~~g~~~~~p~f~dk~~~hi~kn~l~~~~ik~PlgllL~GPPGcGKTll 164 (413)
T PLN00020 110 RTRSFDNLVGGYYIAPAFMDKVAVHIAKNFLALPNIKVPLILGIWGGKGQGKSFQ 164 (413)
T ss_pred hhcchhhhcCccccCHHHHHHHHHHHHhhhhhccCCCCCeEEEeeCCCCCCHHHH
Confidence 34667777665555566677777777777773 2 233577899999999986
No 132
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=69.27 E-value=32 Score=40.71 Aligned_cols=22 Identities=32% Similarity=0.262 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHhcccccCCccc
Q 047385 319 ESLSTLRFGTRAKHIKASPHAH 340 (483)
Q Consensus 319 ETlsTL~fa~rak~I~~~~~~n 340 (483)
-+..|=++-.||+.|+..++..
T Consensus 1176 L~~rt~rl~~~A~~l~~tGv~g 1197 (1758)
T KOG0994|consen 1176 LALRTHRLINRAKELKQTGVLG 1197 (1758)
T ss_pred HHHHHHHHHHHHHHhhhccCch
Confidence 3667778899999999877654
No 133
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=69.04 E-value=1.6 Score=36.92 Aligned_cols=15 Identities=33% Similarity=0.603 Sum_probs=13.2
Q ss_pred EEeeCCCCCCcccee
Q 047385 82 VITYGQTGAGKTFSM 96 (483)
Q Consensus 82 i~ayG~tgSGKT~Tm 96 (483)
|+-||++|.|||+.+
T Consensus 1 I~i~G~~G~GKS~l~ 15 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLA 15 (107)
T ss_pred CEEECCCCCCHHHHH
Confidence 567999999999886
No 134
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=68.49 E-value=1.8 Score=40.80 Aligned_cols=18 Identities=28% Similarity=0.505 Sum_probs=13.4
Q ss_pred EEEeeCCCCCCccceecC
Q 047385 81 TVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm~G 98 (483)
-++.+|+||||||.++..
T Consensus 40 h~li~G~tgsGKS~~l~~ 57 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLLRT 57 (205)
T ss_dssp SEEEE--TTSSHHHHHHH
T ss_pred eEEEEcCCCCCccHHHHH
Confidence 468899999999999854
No 135
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=67.63 E-value=3.7 Score=38.28 Aligned_cols=23 Identities=39% Similarity=0.550 Sum_probs=17.1
Q ss_pred HHhhcCcceEEEeeCCCCCCcccee
Q 047385 72 RDAFNGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 72 ~~~l~G~n~ti~ayG~tgSGKT~Tm 96 (483)
+.+++|.| ++..++||+|||.+.
T Consensus 31 ~~~~~~~~--~li~~~TG~GKT~~~ 53 (203)
T cd00268 31 PPLLSGRD--VIGQAQTGSGKTAAF 53 (203)
T ss_pred HHHhcCCc--EEEECCCCCcHHHHH
Confidence 44445877 466889999999873
No 136
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=67.41 E-value=2.7 Score=38.96 Aligned_cols=17 Identities=29% Similarity=0.403 Sum_probs=14.5
Q ss_pred eEEEeeCCCCCCcccee
Q 047385 80 GTVITYGQTGAGKTFSM 96 (483)
Q Consensus 80 ~ti~ayG~tgSGKT~Tm 96 (483)
+.++-+|+||+|||++.
T Consensus 4 ~~~ll~GpsGvGKT~la 20 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELA 20 (171)
T ss_dssp EEEEEESSTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 46788999999999864
No 137
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=67.22 E-value=4 Score=40.64 Aligned_cols=49 Identities=24% Similarity=0.337 Sum_probs=31.3
Q ss_pred ceEEEeeCCCCCCccceecCCCCCCcc-----------ccccCchhhhHHHHHHhhhcCC
Q 047385 79 NGTVITYGQTGAGKTFSMEGPSILACD-----------EQKKGLLQRTVDELFDCMKSSD 127 (483)
Q Consensus 79 n~ti~ayG~tgSGKT~Tm~G~~~~~~~-----------~~~~Giipr~~~~LF~~i~~~~ 127 (483)
--.|+-||++|+|||++--.-...... .+.-|=-.|-++.||++.....
T Consensus 151 PknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGdgar~Ihely~rA~~~a 210 (368)
T COG1223 151 PKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGDGARRIHELYERARKAA 210 (368)
T ss_pred cceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhhhHHHHHHHHHHHHHhcC
Confidence 346788999999999864321110000 1344666788999998887664
No 138
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=67.18 E-value=5.2 Score=42.18 Aligned_cols=20 Identities=35% Similarity=0.503 Sum_probs=16.7
Q ss_pred ceEEEeeCCCCCCccceecC
Q 047385 79 NGTVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 79 n~ti~ayG~tgSGKT~Tm~G 98 (483)
...|+.+|+||+|||.|+..
T Consensus 174 ~~vi~lvGptGvGKTTT~aK 193 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAK 193 (388)
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 35788899999999999743
No 139
>PRK13764 ATPase; Provisional
Probab=67.14 E-value=2.9 Score=46.49 Aligned_cols=20 Identities=25% Similarity=0.405 Sum_probs=16.7
Q ss_pred ceEEEeeCCCCCCccceecC
Q 047385 79 NGTVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 79 n~ti~ayG~tgSGKT~Tm~G 98 (483)
...|+..|+||||||+++..
T Consensus 257 ~~~ILIsG~TGSGKTTll~A 276 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQA 276 (602)
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 34488999999999999854
No 140
>PRK10536 hypothetical protein; Provisional
Probab=66.96 E-value=3.7 Score=40.83 Aligned_cols=42 Identities=17% Similarity=0.241 Sum_probs=28.7
Q ss_pred eEeecEEecCCCchHHHHHHHHHHHHHHhhcCcceEEEeeCCCCCCccceec
Q 047385 46 KFGFDRVFYEKSEQAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSME 97 (483)
Q Consensus 46 ~F~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm~ 97 (483)
.|.|..|-+-+..|...... +.+ +..|+..|++||||||...
T Consensus 51 ~~~~~~i~p~n~~Q~~~l~a--------l~~--~~lV~i~G~aGTGKT~La~ 92 (262)
T PRK10536 51 SRDTSPILARNEAQAHYLKA--------IES--KQLIFATGEAGCGKTWISA 92 (262)
T ss_pred hcCCccccCCCHHHHHHHHH--------Hhc--CCeEEEECCCCCCHHHHHH
Confidence 46666677766666554442 123 3478999999999999863
No 141
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=66.94 E-value=2.4 Score=36.01 Aligned_cols=15 Identities=33% Similarity=0.361 Sum_probs=13.0
Q ss_pred EEeeCCCCCCcccee
Q 047385 82 VITYGQTGAGKTFSM 96 (483)
Q Consensus 82 i~ayG~tgSGKT~Tm 96 (483)
|+-.|.+|||||+..
T Consensus 1 I~i~G~~GsGKtTia 15 (129)
T PF13238_consen 1 IGISGIPGSGKTTIA 15 (129)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred CEEECCCCCCHHHHH
Confidence 567899999999875
No 142
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=66.77 E-value=2.1 Score=37.53 Aligned_cols=15 Identities=40% Similarity=0.552 Sum_probs=13.3
Q ss_pred EEeeCCCCCCcccee
Q 047385 82 VITYGQTGAGKTFSM 96 (483)
Q Consensus 82 i~ayG~tgSGKT~Tm 96 (483)
|+-+|++|+|||+.+
T Consensus 2 vlL~G~~G~GKt~l~ 16 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLA 16 (139)
T ss_dssp EEEEESSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999875
No 143
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=66.65 E-value=7.7 Score=37.83 Aligned_cols=42 Identities=29% Similarity=0.259 Sum_probs=26.6
Q ss_pred ecCCCchHHHHHHHHHHHHHHhhc-C-cceEEEeeCCCCCCccce
Q 047385 53 FYEKSEQAEVFEFLALPIIRDAFN-G-MNGTVITYGQTGAGKTFS 95 (483)
Q Consensus 53 f~~~~~Q~~vf~~~~~plv~~~l~-G-~n~ti~ayG~tgSGKT~T 95 (483)
|++-..|+++-.. .+.+++.+.. | .-..++-||++|.|||..
T Consensus 23 L~efiGQ~~l~~~-l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTL 66 (233)
T PF05496_consen 23 LDEFIGQEHLKGN-LKILIRAAKKRGEALDHMLFYGPPGLGKTTL 66 (233)
T ss_dssp CCCS-S-HHHHHH-HHHHHHHHHCTTS---EEEEESSTTSSHHHH
T ss_pred HHHccCcHHHHhh-hHHHHHHHHhcCCCcceEEEECCCccchhHH
Confidence 3444568888876 5677777654 2 223577799999999864
No 144
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=66.40 E-value=53 Score=25.96 Aligned_cols=48 Identities=25% Similarity=0.367 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhcchhhHHHHHHHHHhhhhc
Q 047385 409 QTITSLQHMVEDLVRAVEELKSENKALKTRIAAAGKIDAFHKEAGENGYASIVHKISDRLSHL 471 (483)
Q Consensus 409 ~~~~~~~~~~~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (483)
+...+.+..+.+++.+......++..|+.++.. +..+|..+.+.+++|
T Consensus 21 ~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~---------------Ls~qv~~Ls~ql~rL 68 (70)
T PF04899_consen 21 KQQQEWQSSYADLQHMFEQTSQENAALSEQVNN---------------LSQQVQRLSEQLERL 68 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH---------------HHHHHHHHHHHHHhh
Confidence 344556667788888888888888877777665 455566666655554
No 145
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=66.33 E-value=2.5 Score=42.40 Aligned_cols=18 Identities=33% Similarity=0.534 Sum_probs=14.9
Q ss_pred EEEeeCCCCCCccceecC
Q 047385 81 TVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm~G 98 (483)
.|.-.|++|+|||+|+..
T Consensus 196 vi~~vGptGvGKTTt~~k 213 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLAK 213 (282)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 556679999999999855
No 146
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=66.32 E-value=4.1 Score=46.17 Aligned_cols=19 Identities=47% Similarity=0.648 Sum_probs=15.8
Q ss_pred cceEEEeeCCCCCCcccee
Q 047385 78 MNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 78 ~n~ti~ayG~tgSGKT~Tm 96 (483)
-|-.|+.+|+||||||+-+
T Consensus 270 ~n~vvIIcGeTGsGKTTQv 288 (1172)
T KOG0926|consen 270 ENPVVIICGETGSGKTTQV 288 (1172)
T ss_pred cCCeEEEecCCCCCccccc
Confidence 3556888999999999876
No 147
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=66.30 E-value=3.7 Score=44.90 Aligned_cols=30 Identities=23% Similarity=0.486 Sum_probs=22.6
Q ss_pred HHHHHHHhhcCcc--eEEEeeCCCCCCcccee
Q 047385 67 ALPIIRDAFNGMN--GTVITYGQTGAGKTFSM 96 (483)
Q Consensus 67 ~~plv~~~l~G~n--~ti~ayG~tgSGKT~Tm 96 (483)
++..++..+.|.. ..++.+||+|+|||.|+
T Consensus 31 V~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv 62 (519)
T PF03215_consen 31 VRSWLEEMFSGSSPKRILLLTGPSGCGKTTTV 62 (519)
T ss_pred HHHHHHHHhccCCCcceEEEECCCCCCHHHHH
Confidence 4556666665553 46778999999999998
No 148
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=65.43 E-value=2.9 Score=39.43 Aligned_cols=20 Identities=30% Similarity=0.371 Sum_probs=14.7
Q ss_pred CcceEEEeeCCCCCCcccee
Q 047385 77 GMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 77 G~n~ti~ayG~tgSGKT~Tm 96 (483)
..-..+|..|+.|||||+.+
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~ 32 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLA 32 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHH
T ss_pred cCCEEEEEeCCCCCCHHHHH
Confidence 34457889999999998876
No 149
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=64.54 E-value=4.9 Score=40.29 Aligned_cols=40 Identities=30% Similarity=0.256 Sum_probs=24.0
Q ss_pred CchHHHHHHHHHHHHHHhhc--CcceEEEeeCCCCCCccceec
Q 047385 57 SEQAEVFEFLALPIIRDAFN--GMNGTVITYGQTGAGKTFSME 97 (483)
Q Consensus 57 ~~Q~~vf~~~~~plv~~~l~--G~n~ti~ayG~tgSGKT~Tm~ 97 (483)
..|+++.+.+ ..++..... +....++-||++|+|||+...
T Consensus 7 iG~~~~~~~l-~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~ 48 (305)
T TIGR00635 7 IGQEKVKEQL-QLFIEAAKMRQEALDHLLLYGPPGLGKTTLAH 48 (305)
T ss_pred cCHHHHHHHH-HHHHHHHHhcCCCCCeEEEECCCCCCHHHHHH
Confidence 4466666653 334433322 222246779999999998763
No 150
>PTZ00424 helicase 45; Provisional
Probab=64.35 E-value=4.1 Score=42.47 Aligned_cols=26 Identities=31% Similarity=0.471 Sum_probs=19.4
Q ss_pred HHHHhhcCcceEEEeeCCCCCCccceec
Q 047385 70 IIRDAFNGMNGTVITYGQTGAGKTFSME 97 (483)
Q Consensus 70 lv~~~l~G~n~ti~ayG~tgSGKT~Tm~ 97 (483)
.+..+++|.|. +..++||||||.+..
T Consensus 58 ai~~i~~~~d~--ii~apTGsGKT~~~~ 83 (401)
T PTZ00424 58 GIKPILDGYDT--IGQAQSGTGKTATFV 83 (401)
T ss_pred HHHHHhCCCCE--EEECCCCChHHHHHH
Confidence 44556789885 457899999997653
No 151
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=64.03 E-value=28 Score=32.02 Aligned_cols=65 Identities=18% Similarity=0.289 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhh-hcchhhHHHHHHHHHhhhhccc
Q 047385 409 QTITSLQHMVEDLVRAVEELKSENKALKTRIAAAGKIDAFHKE-AGENGYASIVHKISDRLSHLVS 473 (483)
Q Consensus 409 ~~~~~~~~~~~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 473 (483)
..+..+...+.+|+..+.+++.++..|+.++..+....+...- ..-..+...+..+..+|..|.+
T Consensus 72 eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 72 EELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455566667778888888888888888888877765542222 2223466777777777777765
No 152
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=63.96 E-value=4.3 Score=43.42 Aligned_cols=22 Identities=36% Similarity=0.557 Sum_probs=17.4
Q ss_pred HHhhcCcceEEEeeCCCCCCccce
Q 047385 72 RDAFNGMNGTVITYGQTGAGKTFS 95 (483)
Q Consensus 72 ~~~l~G~n~ti~ayG~tgSGKT~T 95 (483)
..+++|.| ++..++||||||.+
T Consensus 36 ~~~l~g~d--vi~~a~TGsGKT~a 57 (460)
T PRK11776 36 PAILAGKD--VIAQAKTGSGKTAA 57 (460)
T ss_pred HHHhcCCC--EEEECCCCCcHHHH
Confidence 44567887 67788999999976
No 153
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=63.61 E-value=3.7 Score=45.97 Aligned_cols=42 Identities=19% Similarity=0.365 Sum_probs=28.9
Q ss_pred EeecEEecCCCchHHHHHHHHHHHHHHhhcCcceEEEeeCCCCCCcccee
Q 047385 47 FGFDRVFYEKSEQAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 47 F~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm 96 (483)
-+||.+++. ...... ++..+..++...++-||++|+|||+..
T Consensus 151 ~~~~~iiGq----s~~~~~----l~~~ia~~~~~~vlL~Gp~GtGKTTLA 192 (615)
T TIGR02903 151 RAFSEIVGQ----ERAIKA----LLAKVASPFPQHIILYGPPGVGKTTAA 192 (615)
T ss_pred CcHHhceeC----cHHHHH----HHHHHhcCCCCeEEEECCCCCCHHHHH
Confidence 567777753 333333 344455677777888999999999875
No 154
>PRK14127 cell division protein GpsB; Provisional
Probab=63.27 E-value=25 Score=30.23 Aligned_cols=26 Identities=31% Similarity=0.483 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 047385 418 VEDLVRAVEELKSENKALKTRIAAAG 443 (483)
Q Consensus 418 ~~~l~~~~~~~~~e~~~l~~~~~~~~ 443 (483)
++.+...+.+|+.++.+|+.++..++
T Consensus 39 ye~l~~e~~~Lk~e~~~l~~~l~e~~ 64 (109)
T PRK14127 39 YEAFQKEIEELQQENARLKAQVDELT 64 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555554444
No 155
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=63.01 E-value=3.6 Score=40.60 Aligned_cols=18 Identities=33% Similarity=0.372 Sum_probs=15.0
Q ss_pred eEEEeeCCCCCCccceec
Q 047385 80 GTVITYGQTGAGKTFSME 97 (483)
Q Consensus 80 ~ti~ayG~tgSGKT~Tm~ 97 (483)
..++-||++|+|||++..
T Consensus 43 ~~vll~GppGtGKTtlA~ 60 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVAR 60 (261)
T ss_pred ceEEEEcCCCCCHHHHHH
Confidence 457789999999999863
No 156
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=62.98 E-value=5.2 Score=45.34 Aligned_cols=36 Identities=22% Similarity=0.295 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHhhcCcceEEEeeCCCCCCcccee
Q 047385 61 EVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 61 ~vf~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm 96 (483)
.||.-.-.-.-.-.-.+.|-||+..|.+|||||.++
T Consensus 67 Hif~~a~~A~~~m~~~~~~Q~IiisGeSGsGKTe~~ 102 (689)
T PF00063_consen 67 HIFAVAQRAYRQMLRTRQNQSIIISGESGSGKTETS 102 (689)
T ss_dssp SHHHHHHHHHHHHHHHTSEEEEEEEESTTSSHHHHH
T ss_pred ccchhhhcccccccccccccceeeccccccccccch
Confidence 466553332222223699999999999999999985
No 157
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=62.96 E-value=8.9 Score=41.88 Aligned_cols=46 Identities=22% Similarity=0.254 Sum_probs=30.5
Q ss_pred EEEeeCCCCCCccceecCCCCCCccccccCchhhhHHHHHHhhhcC
Q 047385 81 TVITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTVDELFDCMKSS 126 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~i~~~ 126 (483)
-||..|+|.|||||--.--.......--.|=+-....++|++....
T Consensus 193 Ii~H~GPTNSGKTy~ALqrl~~aksGvycGPLrLLA~EV~~r~na~ 238 (700)
T KOG0953|consen 193 IIMHVGPTNSGKTYRALQRLKSAKSGVYCGPLRLLAHEVYDRLNAL 238 (700)
T ss_pred EEEEeCCCCCchhHHHHHHHhhhccceecchHHHHHHHHHHHhhhc
Confidence 4899999999999976442221111122355667778899988654
No 158
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=62.62 E-value=4.3 Score=41.93 Aligned_cols=47 Identities=23% Similarity=0.352 Sum_probs=31.2
Q ss_pred HHHHHhhcCcceEEEeeCCCCCCccceecCCCCCCccccccCchhhhHH
Q 047385 69 PIIRDAFNGMNGTVITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTVD 117 (483)
Q Consensus 69 plv~~~l~G~n~ti~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~ 117 (483)
.+|..+++|.+| +.+..||||||..+-+|-...-+.+-.|+.-.++.
T Consensus 36 ~cIpkILeGrdc--ig~AkTGsGKT~AFaLPil~rLsedP~giFalvlT 82 (442)
T KOG0340|consen 36 ACIPKILEGRDC--IGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLT 82 (442)
T ss_pred hhhHHHhccccc--ccccccCCCcchhhhHHHHHhhccCCCcceEEEec
Confidence 456778899997 56779999999999885332222233455554444
No 159
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=62.33 E-value=3.1 Score=42.28 Aligned_cols=16 Identities=38% Similarity=0.709 Sum_probs=13.5
Q ss_pred EEeeCCCCCCccceec
Q 047385 82 VITYGQTGAGKTFSME 97 (483)
Q Consensus 82 i~ayG~tgSGKT~Tm~ 97 (483)
...||+|||||++.+-
T Consensus 90 ~~VYGPTG~GKSqLlR 105 (369)
T PF02456_consen 90 GVVYGPTGSGKSQLLR 105 (369)
T ss_pred EEEECCCCCCHHHHHH
Confidence 4569999999999874
No 160
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=61.84 E-value=3.6 Score=31.70 Aligned_cols=15 Identities=27% Similarity=0.550 Sum_probs=12.3
Q ss_pred EEeeCCCCCCcccee
Q 047385 82 VITYGQTGAGKTFSM 96 (483)
Q Consensus 82 i~ayG~tgSGKT~Tm 96 (483)
.+-.|++|||||..|
T Consensus 26 tli~G~nGsGKSTll 40 (62)
T PF13555_consen 26 TLITGPNGSGKSTLL 40 (62)
T ss_pred EEEECCCCCCHHHHH
Confidence 455899999999766
No 161
>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=61.79 E-value=7 Score=39.29 Aligned_cols=33 Identities=24% Similarity=0.375 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhhcCcceEEEeeCCCCCCccceec
Q 047385 64 EFLALPIIRDAFNGMNGTVITYGQTGAGKTFSME 97 (483)
Q Consensus 64 ~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm~ 97 (483)
-..+.||+ ..+.--+..+-.||+|++|||.++.
T Consensus 179 ~afa~pLL-~~l~~~~~~~hl~G~Ss~GKTt~~~ 211 (286)
T PF06048_consen 179 AAFAAPLL-SLLGVEGFGFHLYGQSSSGKTTALQ 211 (286)
T ss_pred HHHHHHHH-HHhCCCceEEEEEeCCCCCHHHHHH
Confidence 34445666 4455666678899999999998873
No 162
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=61.78 E-value=4.6 Score=38.04 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=18.8
Q ss_pred HHhhcCc---ceEEEeeCCCCCCcccee
Q 047385 72 RDAFNGM---NGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 72 ~~~l~G~---n~ti~ayG~tgSGKT~Tm 96 (483)
|.++.|- ...+.-||++|||||...
T Consensus 2 D~~l~GGi~~g~i~~i~G~~GsGKT~l~ 29 (209)
T TIGR02237 2 DELLGGGVERGTITQIYGPPGSGKTNIC 29 (209)
T ss_pred hhhhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 4555443 567888999999999875
No 163
>PLN03025 replication factor C subunit; Provisional
Probab=61.73 E-value=5.9 Score=40.34 Aligned_cols=18 Identities=39% Similarity=0.543 Sum_probs=15.1
Q ss_pred EEEeeCCCCCCccceecC
Q 047385 81 TVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm~G 98 (483)
.++-||++|+|||++...
T Consensus 36 ~lll~Gp~G~GKTtla~~ 53 (319)
T PLN03025 36 NLILSGPPGTGKTTSILA 53 (319)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 466699999999999865
No 164
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=61.68 E-value=3.5 Score=43.16 Aligned_cols=20 Identities=35% Similarity=0.506 Sum_probs=16.3
Q ss_pred ceEEEeeCCCCCCccceecC
Q 047385 79 NGTVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 79 n~ti~ayG~tgSGKT~Tm~G 98 (483)
...++-+|+||+|||+|+..
T Consensus 137 g~ii~lvGptGvGKTTtiak 156 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAK 156 (374)
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 34667799999999999744
No 165
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=61.44 E-value=7 Score=41.18 Aligned_cols=39 Identities=18% Similarity=0.257 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHHHHhhcC----cceEEEeeCCCCCCccceec
Q 047385 59 QAEVFEFLALPIIRDAFNG----MNGTVITYGQTGAGKTFSME 97 (483)
Q Consensus 59 Q~~vf~~~~~plv~~~l~G----~n~ti~ayG~tgSGKT~Tm~ 97 (483)
....|......+...+.+- ....|.-.||||-|||+|+-
T Consensus 179 ~~~~~~~~l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlA 221 (407)
T COG1419 179 DLRYFSEKLRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLA 221 (407)
T ss_pred hhhhHHHHHHHHHHhhccccccccCcEEEEECCCCCcHHHHHH
Confidence 3444555444444444433 25556678999999999974
No 166
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=61.20 E-value=5.1 Score=42.47 Aligned_cols=24 Identities=38% Similarity=0.584 Sum_probs=18.7
Q ss_pred HHHhhcCcceEEEeeCCCCCCcccee
Q 047385 71 IRDAFNGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 71 v~~~l~G~n~ti~ayG~tgSGKT~Tm 96 (483)
+..+++|.| +++.++||||||.+.
T Consensus 32 i~~~~~g~d--~l~~apTGsGKT~~~ 55 (434)
T PRK11192 32 IPPALDGRD--VLGSAPTGTGKTAAF 55 (434)
T ss_pred HHHHhCCCC--EEEECCCCChHHHHH
Confidence 445567877 678899999999863
No 167
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=60.58 E-value=7.1 Score=39.34 Aligned_cols=20 Identities=25% Similarity=0.287 Sum_probs=17.3
Q ss_pred CcceEEEeeCCCCCCcccee
Q 047385 77 GMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 77 G~n~ti~ayG~tgSGKT~Tm 96 (483)
.-+.+|.-+|+-|||||+.|
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l 37 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFL 37 (325)
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 56778899999999999875
No 168
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=60.17 E-value=6.2 Score=37.84 Aligned_cols=29 Identities=21% Similarity=0.362 Sum_probs=22.8
Q ss_pred HHHHHHhhcC---cceEEEeeCCCCCCcccee
Q 047385 68 LPIIRDAFNG---MNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 68 ~plv~~~l~G---~n~ti~ayG~tgSGKT~Tm 96 (483)
-+-+|.++.| ....+.-+|++|||||..+
T Consensus 5 ~~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 36 (235)
T cd01123 5 SKALDELLGGGIETGSITEIFGEFGSGKTQLC 36 (235)
T ss_pred chhhHhhccCCCCCCeEEEEECCCCCCHHHHH
Confidence 4567888875 4556788999999999876
No 169
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=60.16 E-value=5.3 Score=42.24 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=18.0
Q ss_pred HHHhhcCcceEEEeeCCCCCCcccee
Q 047385 71 IRDAFNGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 71 v~~~l~G~n~ti~ayG~tgSGKT~Tm 96 (483)
+..++.|.|. ++.++||||||.+.
T Consensus 39 ip~il~g~dv--i~~ApTGsGKTla~ 62 (423)
T PRK04837 39 LPLTLAGRDV--AGQAQTGTGKTMAF 62 (423)
T ss_pred HHHHhCCCcE--EEECCCCchHHHHH
Confidence 3456788874 56779999999864
No 170
>PF05729 NACHT: NACHT domain
Probab=59.99 E-value=4.2 Score=36.07 Aligned_cols=17 Identities=24% Similarity=0.468 Sum_probs=14.4
Q ss_pred EEEeeCCCCCCccceec
Q 047385 81 TVITYGQTGAGKTFSME 97 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm~ 97 (483)
.++.+|..|+|||..|.
T Consensus 2 ~l~I~G~~G~GKStll~ 18 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLR 18 (166)
T ss_pred EEEEECCCCCChHHHHH
Confidence 46789999999998874
No 171
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=59.94 E-value=4.3 Score=41.54 Aligned_cols=16 Identities=38% Similarity=0.700 Sum_probs=13.6
Q ss_pred eEEEeeCCCCCCccce
Q 047385 80 GTVITYGQTGAGKTFS 95 (483)
Q Consensus 80 ~ti~ayG~tgSGKT~T 95 (483)
+-|+..||||||||+.
T Consensus 98 SNILLiGPTGsGKTlL 113 (408)
T COG1219 98 SNILLIGPTGSGKTLL 113 (408)
T ss_pred ccEEEECCCCCcHHHH
Confidence 4588899999999865
No 172
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=59.87 E-value=10 Score=39.53 Aligned_cols=43 Identities=26% Similarity=0.361 Sum_probs=26.1
Q ss_pred ec-EEecCCCchHHHHHHHHHHHHHHhhcC---cceEEEeeCCCCCCcccee
Q 047385 49 FD-RVFYEKSEQAEVFEFLALPIIRDAFNG---MNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 49 FD-~Vf~~~~~Q~~vf~~~~~plv~~~l~G---~n~ti~ayG~tgSGKT~Tm 96 (483)
|| .||+. ++..+.++. .+.....| .+-.+.-.|++|||||...
T Consensus 49 F~~~~~G~----~~~i~~lv~-~l~~~a~g~~~~r~il~L~GPPGsGKStla 95 (361)
T smart00763 49 FDHDFFGM----EEAIERFVN-YFKSAAQGLEERKQILYLLGPVGGGKSSLV 95 (361)
T ss_pred cchhccCc----HHHHHHHHH-HHHHHHhcCCCCCcEEEEECCCCCCHHHHH
Confidence 45 67774 444444442 33333343 4456788899999998653
No 173
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=59.59 E-value=6.6 Score=40.76 Aligned_cols=25 Identities=24% Similarity=0.284 Sum_probs=20.0
Q ss_pred HHhhcCcceEEEeeCCCCCCcccee
Q 047385 72 RDAFNGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 72 ~~~l~G~n~ti~ayG~tgSGKT~Tm 96 (483)
+.+.+|.+..++..++||||||...
T Consensus 7 ~~~~~~~~~~~~i~apTGsGKT~~~ 31 (357)
T TIGR03158 7 EALQSKDADIIFNTAPTGAGKTLAW 31 (357)
T ss_pred HHHHcCCCCEEEEECCCCCCHHHHH
Confidence 3445787777888999999999874
No 174
>PRK13342 recombination factor protein RarA; Reviewed
Probab=59.57 E-value=5.2 Score=42.36 Aligned_cols=22 Identities=32% Similarity=0.505 Sum_probs=17.1
Q ss_pred cCcceEEEeeCCCCCCccceec
Q 047385 76 NGMNGTVITYGQTGAGKTFSME 97 (483)
Q Consensus 76 ~G~n~ti~ayG~tgSGKT~Tm~ 97 (483)
.+.-..++-||++|+|||++..
T Consensus 33 ~~~~~~ilL~GppGtGKTtLA~ 54 (413)
T PRK13342 33 AGRLSSMILWGPPGTGKTTLAR 54 (413)
T ss_pred cCCCceEEEECCCCCCHHHHHH
Confidence 4555567779999999998763
No 175
>PRK04328 hypothetical protein; Provisional
Probab=59.54 E-value=6.6 Score=38.54 Aligned_cols=28 Identities=25% Similarity=0.493 Sum_probs=22.5
Q ss_pred HHHHHHhhcC---cceEEEeeCCCCCCccce
Q 047385 68 LPIIRDAFNG---MNGTVITYGQTGAGKTFS 95 (483)
Q Consensus 68 ~plv~~~l~G---~n~ti~ayG~tgSGKT~T 95 (483)
-|-+|.++.| ...+++.+|++|||||..
T Consensus 9 i~~LD~lL~GGip~gs~ili~G~pGsGKT~l 39 (249)
T PRK04328 9 IPGMDEILYGGIPERNVVLLSGGPGTGKSIF 39 (249)
T ss_pred chhHHHHhcCCCcCCcEEEEEcCCCCCHHHH
Confidence 3557888876 577889999999999764
No 176
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=59.38 E-value=5.4 Score=39.86 Aligned_cols=42 Identities=21% Similarity=0.445 Sum_probs=21.4
Q ss_pred ecEEecCCCchHHHHHHHHHHHHHHhhcCcceEEEeeCCCCCCcccee
Q 047385 49 FDRVFYEKSEQAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 49 FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm 96 (483)
|..+|=|..+ ..-|...+..++. . +--|+-+|++|+|||-++
T Consensus 9 ~~~~~VpT~d-t~r~~~ll~~l~~---~--~~pvLl~G~~GtGKT~li 50 (272)
T PF12775_consen 9 FNEILVPTVD-TVRYSYLLDLLLS---N--GRPVLLVGPSGTGKTSLI 50 (272)
T ss_dssp ----T---HH-HHHHHHHHHHHHH---C--TEEEEEESSTTSSHHHHH
T ss_pred cceEEeCcHH-HHHHHHHHHHHHH---c--CCcEEEECCCCCchhHHH
Confidence 3445554333 2234444444443 3 445688999999998875
No 177
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=59.36 E-value=88 Score=35.64 Aligned_cols=82 Identities=27% Similarity=0.349 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhccc-ccCCC----chhhhhHHHhhh---hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047385 361 MERILNKLRERLDVENVNLLEELFIMEGI-ILDPN----SVEDLDLAFEDV---TLQTITSLQHMVEDLVRAVEELKSEN 432 (483)
Q Consensus 361 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~e~ 432 (483)
+......||.+|+..|.+|.|.-...... ..+-+ +..-++..++.. ..+.+..|+...++|.+.++..++||
T Consensus 392 lrsENaqLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~~En 471 (861)
T PF15254_consen 392 LRSENAQLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQKEEN 471 (861)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHH
Confidence 33456678888888888777632221110 01101 122222223321 12334456677788888888888888
Q ss_pred HHHHHHHHHh
Q 047385 433 KALKTRIAAA 442 (483)
Q Consensus 433 ~~l~~~~~~~ 442 (483)
.++...+...
T Consensus 472 k~~~~~~~ek 481 (861)
T PF15254_consen 472 KRLRKMFQEK 481 (861)
T ss_pred HHHHHHHHHH
Confidence 8876654443
No 178
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=59.35 E-value=7.3 Score=39.04 Aligned_cols=21 Identities=24% Similarity=0.286 Sum_probs=16.2
Q ss_pred cCcceEEEeeCCCCCCcccee
Q 047385 76 NGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 76 ~G~n~ti~ayG~tgSGKT~Tm 96 (483)
.|....++-||++|+|||+++
T Consensus 35 ~~~~~~~ll~G~~G~GKt~~~ 55 (319)
T PRK00440 35 EKNMPHLLFAGPPGTGKTTAA 55 (319)
T ss_pred CCCCCeEEEECCCCCCHHHHH
Confidence 344445788999999999876
No 179
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=59.25 E-value=4.2 Score=39.38 Aligned_cols=15 Identities=33% Similarity=0.680 Sum_probs=12.1
Q ss_pred EEeeCCCCCCcccee
Q 047385 82 VITYGQTGAGKTFSM 96 (483)
Q Consensus 82 i~ayG~tgSGKT~Tm 96 (483)
+.-.|++|||||+.+
T Consensus 31 v~iiGpSGSGKSTlL 45 (240)
T COG1126 31 VVIIGPSGSGKSTLL 45 (240)
T ss_pred EEEECCCCCCHHHHH
Confidence 345799999998765
No 180
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=59.04 E-value=28 Score=37.09 Aligned_cols=60 Identities=18% Similarity=0.181 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhcchhhHHHHHHHHHhhhhccccccccc
Q 047385 419 EDLVRAVEELKSENKALKTRIAAAGKIDAFHKEAGENGYASIVHKISDRLSHLVSWIWPFS 479 (483)
Q Consensus 419 ~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (483)
.+|++++++++.+|..|-.++..+|........ -..-...-+..+-..+..+.|++.-|+
T Consensus 289 qeL~kkV~~Le~~N~sLl~qL~klQt~v~q~an-~s~qt~tC~av~~lS~~l~~s~lp~~~ 348 (472)
T KOG0709|consen 289 QELQKKVEELELSNRSLLAQLKKLQTLVIQVAN-KSTQTSTCLAVLLLSFCLLLSTLPCFS 348 (472)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHhhccc-chhccchhHHHHHHHHHHHHhhccccc
Confidence 568888899999999998888888765432211 111123344555566666665554443
No 181
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=58.92 E-value=3.8 Score=36.00 Aligned_cols=17 Identities=35% Similarity=0.610 Sum_probs=13.8
Q ss_pred EEeeCCCCCCccceecC
Q 047385 82 VITYGQTGAGKTFSMEG 98 (483)
Q Consensus 82 i~ayG~tgSGKT~Tm~G 98 (483)
++-+|++|+|||+.+..
T Consensus 2 ~~i~G~~G~GKT~l~~~ 18 (165)
T cd01120 2 ILVFGPTGSGKTTLALQ 18 (165)
T ss_pred eeEeCCCCCCHHHHHHH
Confidence 45699999999998643
No 182
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=58.90 E-value=6.2 Score=42.27 Aligned_cols=24 Identities=33% Similarity=0.567 Sum_probs=18.7
Q ss_pred HHHhhcCcceEEEeeCCCCCCcccee
Q 047385 71 IRDAFNGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 71 v~~~l~G~n~ti~ayG~tgSGKT~Tm 96 (483)
+..+++|.| +++..+||||||.+.
T Consensus 32 i~~il~g~d--vlv~apTGsGKTla~ 55 (456)
T PRK10590 32 IPAVLEGRD--LMASAQTGTGKTAGF 55 (456)
T ss_pred HHHHhCCCC--EEEECCCCCcHHHHH
Confidence 445568887 577889999999874
No 183
>PRK10884 SH3 domain-containing protein; Provisional
Probab=58.35 E-value=1e+02 Score=29.64 Aligned_cols=35 Identities=11% Similarity=0.135 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 047385 410 TITSLQHMVEDLVRAVEELKSENKALKTRIAAAGK 444 (483)
Q Consensus 410 ~~~~~~~~~~~l~~~~~~~~~e~~~l~~~~~~~~~ 444 (483)
.+.+|++..++|+..++.++.+++.|+.++..++.
T Consensus 133 ~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~ 167 (206)
T PRK10884 133 VINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQR 167 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555443
No 184
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=58.35 E-value=4 Score=44.29 Aligned_cols=81 Identities=23% Similarity=0.318 Sum_probs=41.9
Q ss_pred eeEeecEEecCCCchHHHHHHHHHHHHH-Hhhc--C--cceEEEeeCCCCCCccceecC------CCCCCcc-----ccc
Q 047385 45 FKFGFDRVFYEKSEQAEVFEFLALPIIR-DAFN--G--MNGTVITYGQTGAGKTFSMEG------PSILACD-----EQK 108 (483)
Q Consensus 45 ~~F~FD~Vf~~~~~Q~~vf~~~~~plv~-~~l~--G--~n~ti~ayG~tgSGKT~Tm~G------~~~~~~~-----~~~ 108 (483)
...+||.|.+.+...+++.+ ++..+-. ..+. | ..-.++-||++|+|||+..-. -+....+ ...
T Consensus 50 ~~~~~~di~g~~~~k~~l~~-~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~ 128 (495)
T TIGR01241 50 PKVTFKDVAGIDEAKEELME-IVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMF 128 (495)
T ss_pred CCCCHHHhCCHHHHHHHHHH-HHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHH
Confidence 45778888776554444432 2322111 0111 2 223588899999999998632 1100000 011
Q ss_pred cCchhhhHHHHHHhhhcC
Q 047385 109 KGLLQRTVDELFDCMKSS 126 (483)
Q Consensus 109 ~Giipr~~~~LF~~i~~~ 126 (483)
.|.-...+..+|+.....
T Consensus 129 ~g~~~~~l~~~f~~a~~~ 146 (495)
T TIGR01241 129 VGVGASRVRDLFEQAKKN 146 (495)
T ss_pred hcccHHHHHHHHHHHHhc
Confidence 244455677888776554
No 185
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=58.05 E-value=8 Score=41.53 Aligned_cols=29 Identities=7% Similarity=0.130 Sum_probs=20.7
Q ss_pred ccCCCcceeeeEeeCCCCCCHHHHHHHHHHHHH
Q 047385 297 ALGGNSRTALLCCCSPSTSNSAESLSTLRFGTR 329 (483)
Q Consensus 297 sLgGns~t~mI~~isp~~~~~~ETlsTL~fa~r 329 (483)
.+.-..+..+|||++..+.+ +..|.+|-|
T Consensus 319 ~f~iP~Nl~IIgTMNt~Drs----~~~lD~Alr 347 (459)
T PRK11331 319 RFYVPENVYIIGLMNTADRS----LAVVDYALR 347 (459)
T ss_pred cccCCCCeEEEEecCccccc----hhhccHHHH
Confidence 35557899999999988864 445666543
No 186
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=57.88 E-value=8.7 Score=39.35 Aligned_cols=19 Identities=26% Similarity=0.424 Sum_probs=15.3
Q ss_pred eEEEeeCCCCCCccceecC
Q 047385 80 GTVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 80 ~ti~ayG~tgSGKT~Tm~G 98 (483)
..|.-.|++|+|||.|+.-
T Consensus 115 ~vi~lvGpnGsGKTTt~~k 133 (318)
T PRK10416 115 FVILVVGVNGVGKTTTIGK 133 (318)
T ss_pred eEEEEECCCCCcHHHHHHH
Confidence 4566779999999999743
No 187
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=57.34 E-value=3.4 Score=41.51 Aligned_cols=20 Identities=35% Similarity=0.586 Sum_probs=17.8
Q ss_pred cCcceEEEeeCCCCCCccce
Q 047385 76 NGMNGTVITYGQTGAGKTFS 95 (483)
Q Consensus 76 ~G~n~ti~ayG~tgSGKT~T 95 (483)
+|++-+|+..|++|+|||.-
T Consensus 1 kg~~fnImVvG~sG~GKTTF 20 (281)
T PF00735_consen 1 KGFNFNIMVVGESGLGKTTF 20 (281)
T ss_dssp HEEEEEEEEEECTTSSHHHH
T ss_pred CCceEEEEEECCCCCCHHHH
Confidence 48899999999999999864
No 188
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=57.33 E-value=37 Score=29.24 Aligned_cols=36 Identities=19% Similarity=0.386 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 047385 409 QTITSLQHMVEDLVRAVEELKSENKALKTRIAAAGK 444 (483)
Q Consensus 409 ~~~~~~~~~~~~l~~~~~~~~~e~~~l~~~~~~~~~ 444 (483)
..+.+|++.+.++-.....|+-||+.||.++..++.
T Consensus 22 ~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~~ 57 (110)
T PRK13169 22 KELGALKKQLAELLEENTALRLENDKLRERLEELEA 57 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345666777777778888888888888998888643
No 189
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=57.29 E-value=4.4 Score=39.25 Aligned_cols=20 Identities=30% Similarity=0.566 Sum_probs=16.8
Q ss_pred ceEEEeeCCCCCCccceecC
Q 047385 79 NGTVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 79 n~ti~ayG~tgSGKT~Tm~G 98 (483)
...++-||++|+|||++.-+
T Consensus 12 ~~~~liyG~~G~GKtt~a~~ 31 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKY 31 (220)
T ss_pred CcEEEEECCCCCCHHHHHHh
Confidence 34689999999999998755
No 190
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=57.28 E-value=8.3 Score=36.85 Aligned_cols=31 Identities=23% Similarity=0.349 Sum_probs=23.2
Q ss_pred HHHHHHHhhcCc---ceEEEeeCCCCCCccceec
Q 047385 67 ALPIIRDAFNGM---NGTVITYGQTGAGKTFSME 97 (483)
Q Consensus 67 ~~plv~~~l~G~---n~ti~ayG~tgSGKT~Tm~ 97 (483)
+-|-+|.++.|- ...+..+|++|||||....
T Consensus 8 Gi~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~ 41 (225)
T PRK09361 8 GCKMLDELLGGGFERGTITQIYGPPGSGKTNICL 41 (225)
T ss_pred CcHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHH
Confidence 345678888643 4567889999999998754
No 191
>PF13173 AAA_14: AAA domain
Probab=57.28 E-value=4.7 Score=35.07 Aligned_cols=17 Identities=35% Similarity=0.554 Sum_probs=14.6
Q ss_pred EEEeeCCCCCCccceec
Q 047385 81 TVITYGQTGAGKTFSME 97 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm~ 97 (483)
.++-+|+.|+|||+.+.
T Consensus 4 ~~~l~G~R~vGKTtll~ 20 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLLK 20 (128)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 56789999999999873
No 192
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=57.25 E-value=37 Score=27.18 Aligned_cols=39 Identities=15% Similarity=0.308 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhh
Q 047385 411 ITSLQHMVEDLVRAVEELKSENKALKTRIAAAGKIDAFH 449 (483)
Q Consensus 411 ~~~~~~~~~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~ 449 (483)
+..+...+.+++..+.+++.+|.+|+.++..+..+.-..
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~~~rIe 64 (85)
T TIGR02209 26 TRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSRHERIE 64 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 445667778888899999999999999999887655433
No 193
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=57.07 E-value=89 Score=36.25 Aligned_cols=65 Identities=23% Similarity=0.262 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhcc-hhhHHHHHHHHHhhhhcc
Q 047385 407 TLQTITSLQHMVEDLVRAVEELKSENKALKTRIAAAGKIDAFHKEAGE-NGYASIVHKISDRLSHLV 472 (483)
Q Consensus 407 ~~~~~~~~~~~~~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 472 (483)
...+...||+.++-++..+++++.+.+-||.+++..-..+ ..+++.+ .-+.++-.+|.+-|=+|+
T Consensus 323 AEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~-~~~ss~qfkqlEqqN~rLKdalVrLR 388 (1243)
T KOG0971|consen 323 AEERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDG-QAASSYQFKQLEQQNARLKDALVRLR 388 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-cccchHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778999999999999999999999999998852111 1112222 115555555555444444
No 194
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=57.06 E-value=8 Score=37.28 Aligned_cols=30 Identities=17% Similarity=0.276 Sum_probs=22.6
Q ss_pred HHHHHHHhhcCc---ceEEEeeCCCCCCcccee
Q 047385 67 ALPIIRDAFNGM---NGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 67 ~~plv~~~l~G~---n~ti~ayG~tgSGKT~Tm 96 (483)
+-|-+|.++.|- ..+++.+|.+|||||+..
T Consensus 10 Gi~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~ 42 (234)
T PRK06067 10 GNEELDRKLGGGIPFPSLILIEGDHGTGKSVLS 42 (234)
T ss_pred CCHHHHHhhCCCCcCCcEEEEECCCCCChHHHH
Confidence 345678887643 567888899999998764
No 195
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=57.04 E-value=8.2 Score=39.18 Aligned_cols=30 Identities=30% Similarity=0.379 Sum_probs=20.8
Q ss_pred HHHHHHHhhcCcceEEEeeCCCCCCccceec
Q 047385 67 ALPIIRDAFNGMNGTVITYGQTGAGKTFSME 97 (483)
Q Consensus 67 ~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm~ 97 (483)
+.+++..++.+. ..++-.|+||||||..|.
T Consensus 133 ~~~~l~~~v~~~-~~ili~G~tGsGKTTll~ 162 (308)
T TIGR02788 133 IKEFLRLAIASR-KNIIISGGTGSGKTTFLK 162 (308)
T ss_pred HHHHHHHHhhCC-CEEEEECCCCCCHHHHHH
Confidence 345666666543 355668999999999763
No 196
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=56.93 E-value=4.5 Score=40.19 Aligned_cols=28 Identities=18% Similarity=0.307 Sum_probs=19.4
Q ss_pred CcceeeeEeeCCCCCCHHHHHHHHHHHHHhcccccC
Q 047385 301 NSRTALLCCCSPSTSNSAESLSTLRFGTRAKHIKAS 336 (483)
Q Consensus 301 ns~t~mI~~isp~~~~~~ETlsTL~fa~rak~I~~~ 336 (483)
-++|++.+| .+.+| .+++|+|.--++..
T Consensus 185 l~kTivfVT-----HDidE---A~kLadri~vm~~G 212 (309)
T COG1125 185 LGKTIVFVT-----HDIDE---ALKLADRIAVMDAG 212 (309)
T ss_pred hCCEEEEEe-----cCHHH---HHhhhceEEEecCC
Confidence 467877775 34666 68899998765543
No 197
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=56.75 E-value=4.4 Score=43.53 Aligned_cols=24 Identities=33% Similarity=0.483 Sum_probs=18.9
Q ss_pred hhcCcceEEEeeCCCCCCccceecCC
Q 047385 74 AFNGMNGTVITYGQTGAGKTFSMEGP 99 (483)
Q Consensus 74 ~l~G~n~ti~ayG~tgSGKT~Tm~G~ 99 (483)
+.+|.. ++|++|||||||+...+|
T Consensus 108 i~~Grd--l~acAqTGsGKT~aFLiP 131 (482)
T KOG0335|consen 108 ISGGRD--LMACAQTGSGKTAAFLIP 131 (482)
T ss_pred eecCCc--eEEEccCCCcchHHHHHH
Confidence 335555 489999999999998774
No 198
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=56.50 E-value=20 Score=26.48 Aligned_cols=30 Identities=33% Similarity=0.506 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 047385 415 QHMVEDLVRAVEELKSENKALKTRIAAAGK 444 (483)
Q Consensus 415 ~~~~~~l~~~~~~~~~e~~~l~~~~~~~~~ 444 (483)
.+.+.++...+..|+.+|..|+.++..|+.
T Consensus 24 k~~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 24 KQREEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345566777777888888888887777653
No 199
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=56.41 E-value=48 Score=28.42 Aligned_cols=35 Identities=20% Similarity=0.428 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 047385 410 TITSLQHMVEDLVRAVEELKSENKALKTRIAAAGK 444 (483)
Q Consensus 410 ~~~~~~~~~~~l~~~~~~~~~e~~~l~~~~~~~~~ 444 (483)
.+.+++..+.++-....+|+-||..||.++....+
T Consensus 23 ~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 23 ELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45556666667777777777788888888877654
No 200
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=56.27 E-value=5.3 Score=36.67 Aligned_cols=14 Identities=36% Similarity=0.584 Sum_probs=12.4
Q ss_pred EEeeCCCCCCccce
Q 047385 82 VITYGQTGAGKTFS 95 (483)
Q Consensus 82 i~ayG~tgSGKT~T 95 (483)
|+.+|++|||||+.
T Consensus 2 i~i~G~pGsGKst~ 15 (183)
T TIGR01359 2 VFVLGGPGSGKGTQ 15 (183)
T ss_pred EEEECCCCCCHHHH
Confidence 68899999999876
No 201
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=55.92 E-value=4.9 Score=35.65 Aligned_cols=15 Identities=27% Similarity=0.554 Sum_probs=12.5
Q ss_pred EEeeCCCCCCcccee
Q 047385 82 VITYGQTGAGKTFSM 96 (483)
Q Consensus 82 i~ayG~tgSGKT~Tm 96 (483)
|+..|++|||||+.-
T Consensus 2 i~l~G~~GsGKST~a 16 (150)
T cd02021 2 IVVMGVSGSGKSTVG 16 (150)
T ss_pred EEEEcCCCCCHHHHH
Confidence 567899999998763
No 202
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=55.76 E-value=10 Score=42.94 Aligned_cols=37 Identities=27% Similarity=0.302 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHhhcCcceEEEeeCCCCCCcccee
Q 047385 60 AEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 60 ~~vf~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm 96 (483)
-.||.-.-...-.-.-.|.|-||+.-|.+|||||.|.
T Consensus 73 PHifavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 109 (677)
T smart00242 73 PHVFAIADNAYRNMLNDKENQSIIISGESGAGKTENT 109 (677)
T ss_pred CCHHHHHHHHHHHHHhcCCCceEEEecCCCCcchHHH
Confidence 3466543332222223799999999999999999986
No 203
>PRK04195 replication factor C large subunit; Provisional
Probab=55.69 E-value=8.6 Score=41.61 Aligned_cols=29 Identities=28% Similarity=0.416 Sum_probs=20.8
Q ss_pred HHHHHHhhcCc-ceEEEeeCCCCCCcccee
Q 047385 68 LPIIRDAFNGM-NGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 68 ~plv~~~l~G~-n~ti~ayG~tgSGKT~Tm 96 (483)
..++.....|. .-.++-||++|+|||++.
T Consensus 27 ~~~l~~~~~g~~~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 27 REWIESWLKGKPKKALLLYGPPGVGKTSLA 56 (482)
T ss_pred HHHHHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 34445544554 456788999999999886
No 204
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=55.58 E-value=12 Score=35.95 Aligned_cols=37 Identities=22% Similarity=0.092 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHhhc-CcceEEEeeCCCCCCcccee
Q 047385 60 AEVFEFLALPIIRDAFN-GMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 60 ~~vf~~~~~plv~~~l~-G~n~ti~ayG~tgSGKT~Tm 96 (483)
..+|..++.-+...+-. +....|.-.|++|||||+.+
T Consensus 13 ~~~~~~l~~~~~~~~~~~~~~~iigi~G~~GsGKTTl~ 50 (229)
T PRK09270 13 EAVHKPLLRRLAALQAEPQRRTIVGIAGPPGAGKSTLA 50 (229)
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHH
Confidence 34555555444333333 44445666799999999875
No 205
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=55.50 E-value=1.1e+02 Score=25.79 Aligned_cols=38 Identities=26% Similarity=0.267 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 047385 407 TLQTITSLQHMVEDLVRAVEELKSENKALKTRIAAAGK 444 (483)
Q Consensus 407 ~~~~~~~~~~~~~~l~~~~~~~~~e~~~l~~~~~~~~~ 444 (483)
.......++..++.|...+++++.+|..|..++.....
T Consensus 71 ~a~l~~~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r~ 108 (109)
T PF03980_consen 71 RAHLAPYKKKEREQLNARLQELEEENEALAEEIQEQRK 108 (109)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34556667788999999999999999999999987643
No 206
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=55.47 E-value=4.7 Score=42.09 Aligned_cols=17 Identities=41% Similarity=0.815 Sum_probs=14.5
Q ss_pred eEEEeeCCCCCCcccee
Q 047385 80 GTVITYGQTGAGKTFSM 96 (483)
Q Consensus 80 ~ti~ayG~tgSGKT~Tm 96 (483)
.-|+-||.+||||||++
T Consensus 31 S~~~iyG~sgTGKT~~~ 47 (438)
T KOG2543|consen 31 SIVHIYGHSGTGKTYLV 47 (438)
T ss_pred eeEEEeccCCCchhHHH
Confidence 34689999999999985
No 207
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=55.43 E-value=11 Score=37.39 Aligned_cols=28 Identities=25% Similarity=0.196 Sum_probs=18.9
Q ss_pred HHHHHHHhhcCcceEEEeeCCCCCCcccee
Q 047385 67 ALPIIRDAFNGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 67 ~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm 96 (483)
.+.++..+..|.+. +-+|++|+|||...
T Consensus 11 ~~~~l~~l~~g~~v--LL~G~~GtGKT~lA 38 (262)
T TIGR02640 11 TSRALRYLKSGYPV--HLRGPAGTGKTTLA 38 (262)
T ss_pred HHHHHHHHhcCCeE--EEEcCCCCCHHHHH
Confidence 33444555566654 55899999998764
No 208
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=55.34 E-value=93 Score=25.12 Aligned_cols=23 Identities=35% Similarity=0.372 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 047385 411 ITSLQHMVEDLVRAVEELKSENK 433 (483)
Q Consensus 411 ~~~~~~~~~~l~~~~~~~~~e~~ 433 (483)
|.-|+.++++|+.+...+..++.
T Consensus 20 I~LLqmEieELKekn~~L~~e~~ 42 (79)
T PRK15422 20 ITLLQMEIEELKEKNNSLSQEVQ 42 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444433
No 209
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=55.20 E-value=1.3e+02 Score=26.54 Aligned_cols=61 Identities=15% Similarity=0.296 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhcchhhHHHHHHHHHhhhhcc
Q 047385 408 LQTITSLQHMVEDLVRAVEELKSENKALKTRIAAAGKIDAFHKEAGENGYASIVHKISDRLSHLV 472 (483)
Q Consensus 408 ~~~~~~~~~~~~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (483)
.+.+..+...+..++..+.+++.+.+..+..+......+... ...|..-+..+..|+.+|.
T Consensus 58 ~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~q----k~~le~e~~~~~~r~~dL~ 118 (132)
T PF07926_consen 58 IKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQ----KEQLEKELSELEQRIEDLN 118 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 445666666677777777777777777777666655554322 2446667777777777664
No 210
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=54.89 E-value=1.3e+02 Score=28.37 Aligned_cols=41 Identities=27% Similarity=0.221 Sum_probs=33.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Q 047385 406 VTLQTITSLQHMVEDLVRAVEELKSENKALKTRIAAAGKID 446 (483)
Q Consensus 406 ~~~~~~~~~~~~~~~l~~~~~~~~~e~~~l~~~~~~~~~~~ 446 (483)
...+.+..+++.+.+|..+.+++..||..||+---.|-++.
T Consensus 105 vmr~eV~~Y~~KL~eLE~kq~~L~rEN~eLKElcl~LDeer 145 (195)
T PF10226_consen 105 VMRQEVAQYQQKLKELEDKQEELIRENLELKELCLYLDEER 145 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhccc
Confidence 34567788899999999999999999999998776666554
No 211
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=54.72 E-value=8.7 Score=43.43 Aligned_cols=31 Identities=26% Similarity=0.295 Sum_probs=20.6
Q ss_pred HHHHHHHhhc-----CcceEEEeeCCCCCCccceecC
Q 047385 67 ALPIIRDAFN-----GMNGTVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 67 ~~plv~~~l~-----G~n~ti~ayG~tgSGKT~Tm~G 98 (483)
+..+++.+.. |.+..++. -+||||||+||..
T Consensus 247 v~~~~~~~~~~~~~~~~~~gli~-~~TGsGKT~t~~~ 282 (667)
T TIGR00348 247 VKKIVESITRKTWGKDERGGLIW-HTQGSGKTLTMLF 282 (667)
T ss_pred HHHHHHHHHhcccCCCCceeEEE-EecCCCccHHHHH
Confidence 4455566555 34445543 4999999999965
No 212
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=54.44 E-value=8.9 Score=39.14 Aligned_cols=17 Identities=41% Similarity=0.638 Sum_probs=14.7
Q ss_pred EEEeeCCCCCCccceec
Q 047385 81 TVITYGQTGAGKTFSME 97 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm~ 97 (483)
.++-||++|+|||+...
T Consensus 53 ~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 53 HVLLYGPPGLGKTTLAN 69 (328)
T ss_pred cEEEECCCCccHHHHHH
Confidence 57779999999999874
No 213
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=54.10 E-value=6.3 Score=40.19 Aligned_cols=53 Identities=25% Similarity=0.388 Sum_probs=36.0
Q ss_pred cceeEeecEEecCCCchHHHHHHHHHHHHHHhh-c--Ccce--EEEeeCCCCCCccce
Q 047385 43 ENFKFGFDRVFYEKSEQAEVFEFLALPIIRDAF-N--GMNG--TVITYGQTGAGKTFS 95 (483)
Q Consensus 43 ~~~~F~FD~Vf~~~~~Q~~vf~~~~~plv~~~l-~--G~n~--ti~ayG~tgSGKT~T 95 (483)
....++||+|-+-.-.-.++-+.+..|+++..+ . |... -+.-||+.|+|||+.
T Consensus 125 ~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTll 182 (388)
T KOG0651|consen 125 DPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLL 182 (388)
T ss_pred CccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHH
Confidence 456788999877544334455555678886655 2 4433 367899999999875
No 214
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=54.08 E-value=9.4 Score=38.88 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=19.9
Q ss_pred hcCcceEEEeeCCCCCCccceecC
Q 047385 75 FNGMNGTVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 75 l~G~n~ti~ayG~tgSGKT~Tm~G 98 (483)
-..-+.-++-||+.|||||.+|.-
T Consensus 19 ~~~~~~r~vL~G~~GsGKS~~L~q 42 (309)
T PF10236_consen 19 KSSKNNRYVLTGERGSGKSVLLAQ 42 (309)
T ss_pred ccCCceEEEEECCCCCCHHHHHHH
Confidence 356677789999999999999854
No 215
>PRK00131 aroK shikimate kinase; Reviewed
Probab=53.99 E-value=6.5 Score=35.41 Aligned_cols=17 Identities=29% Similarity=0.380 Sum_probs=14.3
Q ss_pred eEEEeeCCCCCCcccee
Q 047385 80 GTVITYGQTGAGKTFSM 96 (483)
Q Consensus 80 ~ti~ayG~tgSGKT~Tm 96 (483)
..|+.+|.+|||||+.-
T Consensus 5 ~~i~l~G~~GsGKstla 21 (175)
T PRK00131 5 PNIVLIGFMGAGKSTIG 21 (175)
T ss_pred CeEEEEcCCCCCHHHHH
Confidence 36888999999998873
No 216
>PRK14974 cell division protein FtsY; Provisional
Probab=53.98 E-value=16 Score=37.84 Aligned_cols=20 Identities=25% Similarity=0.409 Sum_probs=16.5
Q ss_pred ceEEEeeCCCCCCccceecC
Q 047385 79 NGTVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 79 n~ti~ayG~tgSGKT~Tm~G 98 (483)
...|.-.|++|+|||.|+.-
T Consensus 140 ~~vi~~~G~~GvGKTTtiak 159 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAK 159 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHH
Confidence 45788899999999999743
No 217
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=53.82 E-value=58 Score=35.73 Aligned_cols=36 Identities=28% Similarity=0.355 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 047385 410 TITSLQHMVEDLVRAVEELKSENKALKTRIAAAGKI 445 (483)
Q Consensus 410 ~~~~~~~~~~~l~~~~~~~~~e~~~l~~~~~~~~~~ 445 (483)
.|.++.+.+|++++.|.+.+.|..+||..+++.|..
T Consensus 108 eI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~ 143 (907)
T KOG2264|consen 108 EIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQ 143 (907)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHH
Confidence 455666777777777777777888888777776643
No 218
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=53.79 E-value=7.1 Score=46.71 Aligned_cols=28 Identities=21% Similarity=0.283 Sum_probs=19.3
Q ss_pred HHHHhhcCcceEEEeeCCCCCCccceecC
Q 047385 70 IIRDAFNGMNGTVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 70 lv~~~l~G~n~ti~ayG~tgSGKT~Tm~G 98 (483)
+++.+-+|....++ ..+||||||+||.+
T Consensus 425 i~~a~~~g~r~~Ll-~maTGSGKT~tai~ 452 (1123)
T PRK11448 425 VEKAIVEGQREILL-AMATGTGKTRTAIA 452 (1123)
T ss_pred HHHHHHhccCCeEE-EeCCCCCHHHHHHH
Confidence 33444456655444 48999999999876
No 219
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=53.78 E-value=9.2 Score=36.38 Aligned_cols=31 Identities=19% Similarity=0.333 Sum_probs=22.8
Q ss_pred HHHHHHHhhc-Cc--ceEEEeeCCCCCCccceec
Q 047385 67 ALPIIRDAFN-GM--NGTVITYGQTGAGKTFSME 97 (483)
Q Consensus 67 ~~plv~~~l~-G~--n~ti~ayG~tgSGKT~Tm~ 97 (483)
+-|-+|.++. |+ ...+.-+|++|+|||..+.
T Consensus 4 G~~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~ 37 (226)
T cd01393 4 GSKALDELLGGGIPTGRITEIFGEFGSGKTQLCL 37 (226)
T ss_pred CcHHHHHHhCCCCcCCcEEEEeCCCCCChhHHHH
Confidence 3466788886 43 3457789999999998764
No 220
>PRK07261 topology modulation protein; Provisional
Probab=53.63 E-value=6.2 Score=36.37 Aligned_cols=15 Identities=27% Similarity=0.476 Sum_probs=12.7
Q ss_pred EEeeCCCCCCcccee
Q 047385 82 VITYGQTGAGKTFSM 96 (483)
Q Consensus 82 i~ayG~tgSGKT~Tm 96 (483)
|+..|++|||||+..
T Consensus 3 i~i~G~~GsGKSTla 17 (171)
T PRK07261 3 IAIIGYSGSGKSTLA 17 (171)
T ss_pred EEEEcCCCCCHHHHH
Confidence 677899999998764
No 221
>PRK08118 topology modulation protein; Reviewed
Probab=53.49 E-value=6.3 Score=36.22 Aligned_cols=14 Identities=36% Similarity=0.608 Sum_probs=12.1
Q ss_pred EEeeCCCCCCccce
Q 047385 82 VITYGQTGAGKTFS 95 (483)
Q Consensus 82 i~ayG~tgSGKT~T 95 (483)
|+..|++|||||+.
T Consensus 4 I~I~G~~GsGKSTl 17 (167)
T PRK08118 4 IILIGSGGSGKSTL 17 (167)
T ss_pred EEEECCCCCCHHHH
Confidence 67899999999953
No 222
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=53.34 E-value=26 Score=26.28 Aligned_cols=32 Identities=13% Similarity=0.306 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 047385 412 TSLQHMVEDLVRAVEELKSENKALKTRIAAAG 443 (483)
Q Consensus 412 ~~~~~~~~~l~~~~~~~~~e~~~l~~~~~~~~ 443 (483)
.+++..+..+...+..+++||+.++..++.+.
T Consensus 3 ~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~ 34 (55)
T PF05377_consen 3 DELENELPRIESSINTVKKENEEISESVEKIE 34 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666666666666666666655543
No 223
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=53.27 E-value=6.6 Score=44.87 Aligned_cols=51 Identities=27% Similarity=0.522 Sum_probs=27.8
Q ss_pred eEeecEEecCCCchHHHHHHHHHHHHH-Hhhc--Cc--ceEEEeeCCCCCCcccee
Q 047385 46 KFGFDRVFYEKSEQAEVFEFLALPIIR-DAFN--GM--NGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 46 ~F~FD~Vf~~~~~Q~~vf~~~~~plv~-~~l~--G~--n~ti~ayG~tgSGKT~Tm 96 (483)
.++||.|-+.+..-+.+.+.+..|+-. .+++ |. .-.|+-||++|+|||+.+
T Consensus 174 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~la 229 (733)
T TIGR01243 174 KVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLA 229 (733)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHH
Confidence 356666655443333444433333221 1222 11 235888999999999875
No 224
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=53.21 E-value=9 Score=41.24 Aligned_cols=25 Identities=24% Similarity=0.405 Sum_probs=18.4
Q ss_pred HHHHhhcCcceEEEeeCCCCCCcccee
Q 047385 70 IIRDAFNGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 70 lv~~~l~G~n~ti~ayG~tgSGKT~Tm 96 (483)
.|..++.|.++ ++..+||||||.+.
T Consensus 19 ai~~~l~g~dv--lv~apTGsGKTl~y 43 (470)
T TIGR00614 19 VINAVLLGRDC--FVVMPTGGGKSLCY 43 (470)
T ss_pred HHHHHHcCCCE--EEEcCCCCcHhHHH
Confidence 34556688874 55679999999764
No 225
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=53.11 E-value=5.9 Score=36.39 Aligned_cols=18 Identities=39% Similarity=0.772 Sum_probs=14.2
Q ss_pred eEEEeeCCCCCCccceec
Q 047385 80 GTVITYGQTGAGKTFSME 97 (483)
Q Consensus 80 ~ti~ayG~tgSGKT~Tm~ 97 (483)
+..+-||++|+|||..|.
T Consensus 20 g~~vi~G~Ng~GKStil~ 37 (202)
T PF13476_consen 20 GLNVIYGPNGSGKSTILE 37 (202)
T ss_dssp EEEEEEESTTSSHHHHHH
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 345569999999998873
No 226
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=53.08 E-value=7.7 Score=38.88 Aligned_cols=23 Identities=30% Similarity=0.458 Sum_probs=20.5
Q ss_pred hhcCcceEEEeeCCCCCCcccee
Q 047385 74 AFNGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 74 ~l~G~n~ti~ayG~tgSGKT~Tm 96 (483)
+-+||.--|+|.|.||-|||..|
T Consensus 37 v~~GF~FNilCvGETg~GKsTLm 59 (406)
T KOG3859|consen 37 VSQGFCFNILCVGETGLGKSTLM 59 (406)
T ss_pred HhcCceEEEEEeccCCccHHHHH
Confidence 34899999999999999999866
No 227
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=53.00 E-value=50 Score=26.81 Aligned_cols=34 Identities=35% Similarity=0.390 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 047385 410 TITSLQHMVEDLVRAVEELKSENKALKTRIAAAG 443 (483)
Q Consensus 410 ~~~~~~~~~~~l~~~~~~~~~e~~~l~~~~~~~~ 443 (483)
.+..||..+..|-..++..+.|++.|+.+-+-|+
T Consensus 24 ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq 57 (80)
T PF10224_consen 24 EILELQDSLEALSDRVEEVKEENEKLESENEYLQ 57 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555444443
No 228
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=52.96 E-value=11 Score=35.76 Aligned_cols=29 Identities=24% Similarity=0.379 Sum_probs=21.7
Q ss_pred HHHHHhhc-Ccc--eEEEeeCCCCCCccceec
Q 047385 69 PIIRDAFN-GMN--GTVITYGQTGAGKTFSME 97 (483)
Q Consensus 69 plv~~~l~-G~n--~ti~ayG~tgSGKT~Tm~ 97 (483)
+-+|.++. |+. ..+..+|++|||||....
T Consensus 6 ~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~ 37 (218)
T cd01394 6 KGLDELLGGGVERGTVTQVYGPPGTGKTNIAI 37 (218)
T ss_pred hHHHHHhcCCccCCeEEEEECCCCCCHHHHHH
Confidence 45688885 443 357789999999998753
No 229
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=52.89 E-value=9.3 Score=42.00 Aligned_cols=43 Identities=23% Similarity=0.316 Sum_probs=27.5
Q ss_pred eEeecEEecCCCchHHHHHHHHHHHHHHhhcCcceEEEeeCCCCCCcccee
Q 047385 46 KFGFDRVFYEKSEQAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 46 ~F~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm 96 (483)
.-+|+.+++.+.. - +.+...+..+....|+-||++|+|||+.-
T Consensus 61 p~~f~~iiGqs~~----i----~~l~~al~~~~~~~vLi~Ge~GtGKt~lA 103 (531)
T TIGR02902 61 PKSFDEIIGQEEG----I----KALKAALCGPNPQHVIIYGPPGVGKTAAA 103 (531)
T ss_pred cCCHHHeeCcHHH----H----HHHHHHHhCCCCceEEEECCCCCCHHHHH
Confidence 3567777775432 2 22223344555667888999999998753
No 230
>PRK10884 SH3 domain-containing protein; Provisional
Probab=52.78 E-value=73 Score=30.58 Aligned_cols=33 Identities=30% Similarity=0.381 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 047385 413 SLQHMVEDLVRAVEELKSENKALKTRIAAAGKI 445 (483)
Q Consensus 413 ~~~~~~~~l~~~~~~~~~e~~~l~~~~~~~~~~ 445 (483)
++++.+.+....+.+++.+|.+|+++++.++.+
T Consensus 122 ~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~ 154 (206)
T PRK10884 122 EMQQKVAQSDSVINGLKEENQKLKNQLIVAQKK 154 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444555555555555555544433
No 231
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=52.68 E-value=6.7 Score=39.22 Aligned_cols=21 Identities=24% Similarity=0.532 Sum_probs=18.7
Q ss_pred cCcceEEEeeCCCCCCcccee
Q 047385 76 NGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 76 ~G~n~ti~ayG~tgSGKT~Tm 96 (483)
.|+...|+..|++|+|||..+
T Consensus 1 ~g~~f~I~vvG~sg~GKSTli 21 (276)
T cd01850 1 KGFQFNIMVVGESGLGKSTFI 21 (276)
T ss_pred CCcEEEEEEEcCCCCCHHHHH
Confidence 489999999999999998764
No 232
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=52.60 E-value=8.5 Score=43.28 Aligned_cols=18 Identities=28% Similarity=0.431 Sum_probs=15.4
Q ss_pred EEEeeCCCCCCccceecC
Q 047385 81 TVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm~G 98 (483)
.++..|++|+|||+|+..
T Consensus 175 ~~lI~GpPGTGKT~t~~~ 192 (637)
T TIGR00376 175 LFLIHGPPGTGKTRTLVE 192 (637)
T ss_pred eEEEEcCCCCCHHHHHHH
Confidence 456899999999999865
No 233
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=52.41 E-value=19 Score=40.42 Aligned_cols=53 Identities=21% Similarity=0.293 Sum_probs=35.4
Q ss_pred CCCccCCCcccchhhhhccCCCcc-----e----eeeEeeCCCCCCHHHHHHHHHHHHHhcccccCCc
Q 047385 280 AFHIPYRDSKLTRILQDALGGNSR-----T----ALLCCCSPSTSNSAESLSTLRFGTRAKHIKASPH 338 (483)
Q Consensus 280 ~~~iPyRdSkLT~lLqdsLgGns~-----t----~mI~~isp~~~~~~ETlsTL~fa~rak~I~~~~~ 338 (483)
-.+-||-..-|-.++...|.|-.. + -=||.||- ++-..|.++.||..|.....
T Consensus 571 i~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSG------DaRraldic~RA~Eia~~~~ 632 (767)
T KOG1514|consen 571 ICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSG------DARRALDICRRAAEIAEERN 632 (767)
T ss_pred eecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccc------cHHHHHHHHHHHHHHhhhhc
Confidence 357789989999998888877510 0 02344443 35678889999988875443
No 234
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=52.39 E-value=14 Score=41.81 Aligned_cols=35 Identities=26% Similarity=0.450 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHhh-cCcceEEEeeCCCCCCcccee
Q 047385 61 EVFEFLALPIIRDAF-NGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 61 ~vf~~~~~plv~~~l-~G~n~ti~ayG~tgSGKT~Tm 96 (483)
.||.-. ......++ .|.|-||+.-|.+|||||.|.
T Consensus 74 HifaiA-~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 109 (677)
T cd01383 74 HVYAIA-DTAYNEMMRDEVNQSIIISGESGAGKTETA 109 (677)
T ss_pred CHHHHH-HHHHHHHHHcCCCceEEEecCCCCCcchHH
Confidence 355443 23333333 699999999999999999885
No 235
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=52.32 E-value=8 Score=40.00 Aligned_cols=30 Identities=23% Similarity=0.326 Sum_probs=22.3
Q ss_pred HHHHHHHhhcCcceEEEeeCCCCCCccceec
Q 047385 67 ALPIIRDAFNGMNGTVITYGQTGAGKTFSME 97 (483)
Q Consensus 67 ~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm~ 97 (483)
...++..++.+. ..|+..|+||||||.+|.
T Consensus 167 ~~~~L~~~v~~~-~~ili~G~tGsGKTTll~ 196 (340)
T TIGR03819 167 VARLLRAIVAAR-LAFLISGGTGSGKTTLLS 196 (340)
T ss_pred HHHHHHHHHhCC-CeEEEECCCCCCHHHHHH
Confidence 345666666643 678889999999998764
No 236
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=52.30 E-value=18 Score=39.21 Aligned_cols=27 Identities=26% Similarity=0.442 Sum_probs=21.3
Q ss_pred HHHHHhhcC---cceEEEeeCCCCCCccce
Q 047385 69 PIIRDAFNG---MNGTVITYGQTGAGKTFS 95 (483)
Q Consensus 69 plv~~~l~G---~n~ti~ayG~tgSGKT~T 95 (483)
|=+|.++.| .+.+++.+|++|||||..
T Consensus 8 ~gLD~il~GGlp~g~~~Li~G~pGsGKT~l 37 (484)
T TIGR02655 8 EGFDDISHGGLPIGRSTLVSGTSGTGKTLF 37 (484)
T ss_pred hhHHHhcCCCCCCCeEEEEEcCCCCCHHHH
Confidence 446778865 467889999999999864
No 237
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=52.28 E-value=12 Score=42.46 Aligned_cols=40 Identities=18% Similarity=0.096 Sum_probs=26.6
Q ss_pred cCCCchHHHHHHHHHHHHHHhhcCcceEEEeeCCCCCCccceec
Q 047385 54 YEKSEQAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSME 97 (483)
Q Consensus 54 ~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm~ 97 (483)
.+...|..+...+... .-.+...-++..|+||||||....
T Consensus 261 ~lt~~Q~~ai~~I~~d----~~~~~~~~~Ll~~~TGSGKT~va~ 300 (681)
T PRK10917 261 ELTGAQKRVVAEILAD----LASPKPMNRLLQGDVGSGKTVVAA 300 (681)
T ss_pred CCCHHHHHHHHHHHHh----hhccCCceEEEECCCCCcHHHHHH
Confidence 4555676666655433 234445567889999999998654
No 238
>PHA02557 22 prohead core protein; Provisional
Probab=52.26 E-value=1.9e+02 Score=28.81 Aligned_cols=62 Identities=18% Similarity=0.225 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhcchhhHHHHHHHHHhhhhc
Q 047385 409 QTITSLQHMVEDLVRAVEELKSENKALKTRIAAAGKIDAFHKEAGENGYASIVHKISDRLSHL 471 (483)
Q Consensus 409 ~~~~~~~~~~~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (483)
..+.+|.+.+.+....+.++..+|.+|+..+...++...+. .+-.+-..++..++..-++++
T Consensus 141 dvV~em~~~L~E~e~~~~~l~~en~~l~e~i~~~~r~~i~~-e~t~gLtdsQkeKv~~L~Egv 202 (271)
T PHA02557 141 DVVAEMEEELDEMEEELNELFEENVALEEYINEVKREVILS-EVTKDLTESQKEKVASLAEGL 202 (271)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcchhHHHHHHHHHHHhcc
Confidence 45678888899999999999999999999988887766544 333333444555544444433
No 239
>PHA02244 ATPase-like protein
Probab=52.22 E-value=14 Score=38.69 Aligned_cols=20 Identities=25% Similarity=0.355 Sum_probs=15.2
Q ss_pred cCcceEEEeeCCCCCCccceec
Q 047385 76 NGMNGTVITYGQTGAGKTFSME 97 (483)
Q Consensus 76 ~G~n~ti~ayG~tgSGKT~Tm~ 97 (483)
.|.+. +-+|++|+|||+...
T Consensus 118 ~~~PV--LL~GppGtGKTtLA~ 137 (383)
T PHA02244 118 ANIPV--FLKGGAGSGKNHIAE 137 (383)
T ss_pred cCCCE--EEECCCCCCHHHHHH
Confidence 56654 559999999998753
No 240
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=52.22 E-value=9.1 Score=43.67 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=17.8
Q ss_pred cCcceEEEeeCCCCCCccceecC
Q 047385 76 NGMNGTVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 76 ~G~n~ti~ayG~tgSGKT~Tm~G 98 (483)
.+.-..++-||++|+|||++...
T Consensus 49 ~~~~~slLL~GPpGtGKTTLA~a 71 (725)
T PRK13341 49 ADRVGSLILYGPPGVGKTTLARI 71 (725)
T ss_pred cCCCceEEEECCCCCCHHHHHHH
Confidence 44445678899999999988743
No 241
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=52.18 E-value=7.8 Score=40.48 Aligned_cols=17 Identities=24% Similarity=0.366 Sum_probs=14.4
Q ss_pred EEeeCCCCCCccceecC
Q 047385 82 VITYGQTGAGKTFSMEG 98 (483)
Q Consensus 82 i~ayG~tgSGKT~Tm~G 98 (483)
++.+|+||||||+++.=
T Consensus 2 ~lv~g~tGsGKt~~~vi 18 (384)
T cd01126 2 VLVFAPTRSGKGVGFVI 18 (384)
T ss_pred eeEecCCCCCCccEEEc
Confidence 57899999999998753
No 242
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=52.09 E-value=17 Score=38.87 Aligned_cols=36 Identities=6% Similarity=-0.048 Sum_probs=26.7
Q ss_pred chhhhhhhcchhhHHHHHHHHHhhhhcccccccccC
Q 047385 445 IDAFHKEAGENGYASIVHKISDRLSHLVSWIWPFSS 480 (483)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (483)
++..+=+.|++--.+-|.+|..++..+.+....|+.
T Consensus 388 sR~~Ria~GsG~~~~~v~~ll~~~~~~~~~~~~~~~ 423 (437)
T PRK00771 388 SRIRRIARGSGTTVEDVRELLKYYKMMKKAMKQLKK 423 (437)
T ss_pred HHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 444555667777888889999988888877776665
No 243
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=52.06 E-value=14 Score=41.84 Aligned_cols=21 Identities=33% Similarity=0.629 Sum_probs=19.8
Q ss_pred cCcceEEEeeCCCCCCcccee
Q 047385 76 NGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 76 ~G~n~ti~ayG~tgSGKT~Tm 96 (483)
.|.|-||+.-|.+|||||.+.
T Consensus 85 ~~~~QsIiisGESGaGKTe~~ 105 (674)
T cd01384 85 EGKSQSILVSGESGAGKTETT 105 (674)
T ss_pred cCCCceEEEECCCCCCchhHH
Confidence 699999999999999999886
No 244
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=51.61 E-value=6.7 Score=34.68 Aligned_cols=16 Identities=38% Similarity=0.507 Sum_probs=13.3
Q ss_pred EEEeeCCCCCCcccee
Q 047385 81 TVITYGQTGAGKTFSM 96 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm 96 (483)
+|+.+|.+|||||+.-
T Consensus 1 ~i~l~G~~GsGKstla 16 (154)
T cd00464 1 NIVLIGMMGAGKTTVG 16 (154)
T ss_pred CEEEEcCCCCCHHHHH
Confidence 4788999999998763
No 245
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=51.40 E-value=6.5 Score=36.06 Aligned_cols=16 Identities=31% Similarity=0.526 Sum_probs=13.8
Q ss_pred EEEeeCCCCCCcccee
Q 047385 81 TVITYGQTGAGKTFSM 96 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm 96 (483)
.|+..|++|||||.++
T Consensus 3 ~~~i~G~sGsGKttl~ 18 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLL 18 (179)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4677899999999886
No 246
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=51.35 E-value=7.1 Score=36.04 Aligned_cols=15 Identities=27% Similarity=0.552 Sum_probs=12.7
Q ss_pred EEeeCCCCCCcccee
Q 047385 82 VITYGQTGAGKTFSM 96 (483)
Q Consensus 82 i~ayG~tgSGKT~Tm 96 (483)
|+.+|++|||||+..
T Consensus 2 I~i~G~pGsGKst~a 16 (194)
T cd01428 2 ILLLGPPGSGKGTQA 16 (194)
T ss_pred EEEECCCCCCHHHHH
Confidence 688999999998654
No 247
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=51.24 E-value=15 Score=41.60 Aligned_cols=21 Identities=43% Similarity=0.542 Sum_probs=19.8
Q ss_pred cCcceEEEeeCCCCCCcccee
Q 047385 76 NGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 76 ~G~n~ti~ayG~tgSGKT~Tm 96 (483)
.|.|-||+.-|.+|||||.+.
T Consensus 83 ~~~~QsIiisGESGaGKTes~ 103 (671)
T cd01381 83 EKKNQCIIISGESGAGKTEST 103 (671)
T ss_pred cCCCceEEEEcCCCCCeehHH
Confidence 699999999999999999986
No 248
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=51.16 E-value=11 Score=40.57 Aligned_cols=29 Identities=31% Similarity=0.477 Sum_probs=20.6
Q ss_pred cCcceEEEeeCCCCCCccceecCCCCCCccccccCchhh
Q 047385 76 NGMNGTVITYGQTGAGKTFSMEGPSILACDEQKKGLLQR 114 (483)
Q Consensus 76 ~G~n~ti~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr 114 (483)
.|... ++.||+.|||||.+..- -+||+|-
T Consensus 196 AGgHn-Ll~~GpPGtGKTmla~R---------l~~lLPp 224 (490)
T COG0606 196 AGGHN-LLLVGPPGTGKTMLASR---------LPGLLPP 224 (490)
T ss_pred hcCCc-EEEecCCCCchHHhhhh---------hcccCCC
Confidence 44443 56799999999988643 4678774
No 249
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=51.03 E-value=14 Score=41.79 Aligned_cols=35 Identities=34% Similarity=0.495 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHhh-cCcceEEEeeCCCCCCcccee
Q 047385 61 EVFEFLALPIIRDAF-NGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 61 ~vf~~~~~plv~~~l-~G~n~ti~ayG~tgSGKT~Tm 96 (483)
.||.- +......++ .|.|-||+.-|.+|||||.+.
T Consensus 68 Hifav-A~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 103 (679)
T cd00124 68 HVFAI-ADRAYRNMLRDRRNQSIIISGESGAGKTENT 103 (679)
T ss_pred CHHHH-HHHHHHHHHhcCCCceEEEecCCCCCchHHH
Confidence 45544 333344444 699999999999999999886
No 250
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=51.00 E-value=14 Score=41.95 Aligned_cols=36 Identities=25% Similarity=0.419 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHhh-cCcceEEEeeCCCCCCcccee
Q 047385 60 AEVFEFLALPIIRDAF-NGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 60 ~~vf~~~~~plv~~~l-~G~n~ti~ayG~tgSGKT~Tm 96 (483)
-.||.-. ......++ .|.|-||+.-|.+|||||.+.
T Consensus 72 PHiyaiA-~~Ay~~m~~~~~~QsIiiSGESGAGKTes~ 108 (693)
T cd01377 72 PHIFAIA-DNAYRSMLQDRENQSILITGESGAGKTENT 108 (693)
T ss_pred CCHHHHH-HHHHHHHHhcCCCceEEEEcCCCCCchHHH
Confidence 3466543 23333333 699999999999999999875
No 251
>PRK06696 uridine kinase; Validated
Probab=50.77 E-value=16 Score=35.08 Aligned_cols=21 Identities=29% Similarity=0.055 Sum_probs=15.8
Q ss_pred cCcceEEEeeCCCCCCcccee
Q 047385 76 NGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 76 ~G~n~ti~ayG~tgSGKT~Tm 96 (483)
.+....|...|.+|||||+..
T Consensus 19 ~~~~~iI~I~G~sgsGKSTlA 39 (223)
T PRK06696 19 LTRPLRVAIDGITASGKTTFA 39 (223)
T ss_pred CCCceEEEEECCCCCCHHHHH
Confidence 345556677799999999864
No 252
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=50.51 E-value=11 Score=37.85 Aligned_cols=38 Identities=34% Similarity=0.213 Sum_probs=25.1
Q ss_pred CCCchHHHHHHHHHHHHHHhhcCcceEEEeeCCCCCCccceecC
Q 047385 55 EKSEQAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 55 ~~~~Q~~vf~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm~G 98 (483)
+-..|.++-+.+. +.+-+|.+ ++.=.|||+|||.+..-
T Consensus 9 ~r~~Q~~~m~~v~----~~~~~~~~--~~~eapTGtGKTl~~L~ 46 (289)
T smart00489 9 PYPIQYEFMEELK----RVLDRGKI--GILESPTGTGKTLSLLC 46 (289)
T ss_pred CCHHHHHHHHHHH----HHHHcCCc--EEEECCCCcchhHHHHH
Confidence 4556777666544 33346755 45567999999988744
No 253
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=50.51 E-value=11 Score=37.85 Aligned_cols=38 Identities=34% Similarity=0.213 Sum_probs=25.1
Q ss_pred CCCchHHHHHHHHHHHHHHhhcCcceEEEeeCCCCCCccceecC
Q 047385 55 EKSEQAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 55 ~~~~Q~~vf~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm~G 98 (483)
+-..|.++-+.+. +.+-+|.+ ++.=.|||+|||.+..-
T Consensus 9 ~r~~Q~~~m~~v~----~~~~~~~~--~~~eapTGtGKTl~~L~ 46 (289)
T smart00488 9 PYPIQYEFMEELK----RVLDRGKI--GILESPTGTGKTLSLLC 46 (289)
T ss_pred CCHHHHHHHHHHH----HHHHcCCc--EEEECCCCcchhHHHHH
Confidence 4556777666544 33346755 45567999999988744
No 254
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=50.48 E-value=7.3 Score=33.37 Aligned_cols=16 Identities=38% Similarity=0.480 Sum_probs=13.2
Q ss_pred EEEeeCCCCCCcccee
Q 047385 81 TVITYGQTGAGKTFSM 96 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm 96 (483)
.+.-.|++|||||.++
T Consensus 17 ~v~I~GpSGsGKSTLl 32 (107)
T cd00820 17 GVLITGDSGIGKTELA 32 (107)
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4566899999999876
No 255
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=50.44 E-value=15 Score=41.77 Aligned_cols=21 Identities=33% Similarity=0.553 Sum_probs=19.7
Q ss_pred cCcceEEEeeCCCCCCcccee
Q 047385 76 NGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 76 ~G~n~ti~ayG~tgSGKT~Tm 96 (483)
.|.|-||+.-|.+|||||.|.
T Consensus 91 ~~~~QsIiisGESGAGKTet~ 111 (692)
T cd01385 91 KKVNQCIVISGESGSGKTEST 111 (692)
T ss_pred cCCCceEEEecCCCCCchHHH
Confidence 689999999999999999886
No 256
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=50.40 E-value=15 Score=41.68 Aligned_cols=35 Identities=26% Similarity=0.373 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHhh-cCcceEEEeeCCCCCCcccee
Q 047385 61 EVFEFLALPIIRDAF-NGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 61 ~vf~~~~~plv~~~l-~G~n~ti~ayG~tgSGKT~Tm 96 (483)
.||.-.- .....++ .|.|-||+.-|.+|||||.+.
T Consensus 69 HifavA~-~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 104 (677)
T cd01387 69 HLFAIAN-LAFAKMLDAKQNQCVIISGESGSGKTEAT 104 (677)
T ss_pred CHHHHHH-HHHHHHHhcCCCceEEEEcCCCCCeehHH
Confidence 3554432 2333333 799999999999999999986
No 257
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=50.34 E-value=6.8 Score=41.77 Aligned_cols=18 Identities=39% Similarity=0.540 Sum_probs=15.0
Q ss_pred EEEeeCCCCCCccceecC
Q 047385 81 TVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm~G 98 (483)
.++-.|++|+|||+|+..
T Consensus 223 ~i~~vGptGvGKTTt~~k 240 (424)
T PRK05703 223 VVALVGPTGVGKTTTLAK 240 (424)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 566679999999999754
No 258
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=49.83 E-value=8.8 Score=39.84 Aligned_cols=20 Identities=35% Similarity=0.607 Sum_probs=18.5
Q ss_pred cCcceEEEeeCCCCCCccce
Q 047385 76 NGMNGTVITYGQTGAGKTFS 95 (483)
Q Consensus 76 ~G~n~ti~ayG~tgSGKT~T 95 (483)
.|+.-+|++.|++|+|||.-
T Consensus 20 ~Gi~f~im~~G~sG~GKttf 39 (373)
T COG5019 20 KGIDFTIMVVGESGLGKTTF 39 (373)
T ss_pred cCCceEEEEecCCCCchhHH
Confidence 69999999999999999974
No 259
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=49.83 E-value=15 Score=41.94 Aligned_cols=35 Identities=34% Similarity=0.422 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHhh-cCcceEEEeeCCCCCCcccee
Q 047385 61 EVFEFLALPIIRDAF-NGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 61 ~vf~~~~~plv~~~l-~G~n~ti~ayG~tgSGKT~Tm 96 (483)
.||.-. ......++ .|.|-||+.-|.+|||||.|.
T Consensus 73 HifaiA-~~Ay~~m~~~~~~QsIiisGESGaGKTes~ 108 (717)
T cd01382 73 HVFAIA-DKAYRDMKVLKMSQSIIVSGESGAGKTENT 108 (717)
T ss_pred cHHHHH-HHHHHHHHhcCCCCeEEEecCCCCChhHHH
Confidence 355432 23333333 699999999999999999986
No 260
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=49.82 E-value=73 Score=27.29 Aligned_cols=42 Identities=21% Similarity=0.167 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhh
Q 047385 408 LQTITSLQHMVEDLVRAVEELKSENKALKTRIAAAGKIDAFH 449 (483)
Q Consensus 408 ~~~~~~~~~~~~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~ 449 (483)
.+.+..+...+.+|+..+.++..||.+|+.+.+.|.+-....
T Consensus 14 e~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~ 55 (107)
T PF06156_consen 14 EQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEEL 55 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667888899999999999999999999999887765533
No 261
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=49.80 E-value=8.4 Score=40.53 Aligned_cols=37 Identities=27% Similarity=0.367 Sum_probs=25.1
Q ss_pred chHHHHHHHHHHHHHHhhcCcceEEEeeCCCCCCccce
Q 047385 58 EQAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFS 95 (483)
Q Consensus 58 ~Q~~vf~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~T 95 (483)
.|+.+... ..|+-.-+-.|.=...+-||++|+|||..
T Consensus 28 GQ~HLlg~-~~~lrr~v~~~~l~SmIl~GPPG~GKTTl 64 (436)
T COG2256 28 GQEHLLGE-GKPLRRAVEAGHLHSMILWGPPGTGKTTL 64 (436)
T ss_pred ChHhhhCC-CchHHHHHhcCCCceeEEECCCCCCHHHH
Confidence 36666654 34444444456666777899999999974
No 262
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=49.79 E-value=6.4 Score=35.49 Aligned_cols=14 Identities=29% Similarity=0.534 Sum_probs=11.0
Q ss_pred EEeeCCCCCCccce
Q 047385 82 VITYGQTGAGKTFS 95 (483)
Q Consensus 82 i~ayG~tgSGKT~T 95 (483)
|+..|++|||||+.
T Consensus 1 i~l~G~~GsGKSTl 14 (163)
T TIGR01313 1 FVLMGVAGSGKSTI 14 (163)
T ss_pred CEEECCCCCCHHHH
Confidence 35579999999854
No 263
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=49.79 E-value=16 Score=41.35 Aligned_cols=21 Identities=43% Similarity=0.542 Sum_probs=19.8
Q ss_pred cCcceEEEeeCCCCCCcccee
Q 047385 76 NGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 76 ~G~n~ti~ayG~tgSGKT~Tm 96 (483)
.|.|-||+.-|.+|||||.+.
T Consensus 83 ~~~~QsIiisGESGaGKTe~~ 103 (674)
T cd01378 83 ENENQCVIISGESGAGKTEAA 103 (674)
T ss_pred cCCCceEEEEcCCCCCcchHH
Confidence 699999999999999999986
No 264
>PRK10865 protein disaggregation chaperone; Provisional
Probab=49.53 E-value=12 Score=43.57 Aligned_cols=17 Identities=41% Similarity=0.585 Sum_probs=14.7
Q ss_pred eEEEeeCCCCCCcccee
Q 047385 80 GTVITYGQTGAGKTFSM 96 (483)
Q Consensus 80 ~ti~ayG~tgSGKT~Tm 96 (483)
+.++-+|++|+|||++.
T Consensus 599 ~~~Lf~Gp~G~GKT~lA 615 (857)
T PRK10865 599 GSFLFLGPTGVGKTELC 615 (857)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 56778899999999975
No 265
>PRK05580 primosome assembly protein PriA; Validated
Probab=49.45 E-value=9.1 Score=43.39 Aligned_cols=37 Identities=32% Similarity=0.340 Sum_probs=23.4
Q ss_pred cCCCchHHHHHHHHHHHHHHhhcCcceEEEeeCCCCCCccceec
Q 047385 54 YEKSEQAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSME 97 (483)
Q Consensus 54 ~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm~ 97 (483)
.....|.++++.+... . ++ ..++.+|+||||||.+..
T Consensus 144 ~Lt~~Q~~ai~~i~~~----~--~~-~~~Ll~~~TGSGKT~v~l 180 (679)
T PRK05580 144 TLNPEQAAAVEAIRAA----A--GF-SPFLLDGVTGSGKTEVYL 180 (679)
T ss_pred CCCHHHHHHHHHHHhc----c--CC-CcEEEECCCCChHHHHHH
Confidence 3444566665554321 1 33 347889999999998764
No 266
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=49.20 E-value=9.8 Score=42.72 Aligned_cols=24 Identities=42% Similarity=0.642 Sum_probs=18.5
Q ss_pred HHHhhcCcceEEEeeCCCCCCcccee
Q 047385 71 IRDAFNGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 71 v~~~l~G~n~ti~ayG~tgSGKT~Tm 96 (483)
+..++.|.+ |++.+|||||||.+.
T Consensus 37 i~~ll~g~d--vl~~ApTGsGKT~af 60 (629)
T PRK11634 37 IPHLLNGRD--VLGMAQTGSGKTAAF 60 (629)
T ss_pred HHHHHcCCC--EEEEcCCCCcHHHHH
Confidence 445567876 677889999999874
No 267
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=49.19 E-value=13 Score=39.90 Aligned_cols=18 Identities=44% Similarity=0.606 Sum_probs=15.6
Q ss_pred eEEEeeCCCCCCccceec
Q 047385 80 GTVITYGQTGAGKTFSME 97 (483)
Q Consensus 80 ~ti~ayG~tgSGKT~Tm~ 97 (483)
.-++.+|+||||||.++.
T Consensus 45 ~h~lvig~tgSGKt~~~v 62 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFV 62 (469)
T ss_pred eEEEEEeCCCCCccceee
Confidence 567889999999999874
No 268
>PHA02624 large T antigen; Provisional
Probab=49.16 E-value=15 Score=40.98 Aligned_cols=30 Identities=17% Similarity=0.165 Sum_probs=22.7
Q ss_pred HHHHHhhcCcce--EEEeeCCCCCCccceecC
Q 047385 69 PIIRDAFNGMNG--TVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 69 plv~~~l~G~n~--ti~ayG~tgSGKT~Tm~G 98 (483)
.++..++.|... |++-||+.|||||+-..+
T Consensus 419 ~~lk~~l~giPKk~~il~~GPpnTGKTtf~~s 450 (647)
T PHA02624 419 DILKLIVENVPKRRYWLFKGPVNSGKTTLAAA 450 (647)
T ss_pred HHHHHHHhcCCCCeEEEEECCCCCCHHHHHHH
Confidence 345666777666 899999999999876543
No 269
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=49.05 E-value=6.8 Score=38.12 Aligned_cols=15 Identities=33% Similarity=0.585 Sum_probs=12.6
Q ss_pred EEeeCCCCCCcccee
Q 047385 82 VITYGQTGAGKTFSM 96 (483)
Q Consensus 82 i~ayG~tgSGKT~Tm 96 (483)
|.-.|++|||||+.|
T Consensus 34 vaI~GpSGSGKSTLL 48 (226)
T COG1136 34 VAIVGPSGSGKSTLL 48 (226)
T ss_pred EEEECCCCCCHHHHH
Confidence 455899999999876
No 270
>PRK14531 adenylate kinase; Provisional
Probab=48.88 E-value=8.2 Score=35.78 Aligned_cols=15 Identities=33% Similarity=0.543 Sum_probs=12.9
Q ss_pred EEEeeCCCCCCccce
Q 047385 81 TVITYGQTGAGKTFS 95 (483)
Q Consensus 81 ti~ayG~tgSGKT~T 95 (483)
-|+.+|++|||||+.
T Consensus 4 ~i~i~G~pGsGKsT~ 18 (183)
T PRK14531 4 RLLFLGPPGAGKGTQ 18 (183)
T ss_pred EEEEECCCCCCHHHH
Confidence 378899999999876
No 271
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=48.79 E-value=2.2e+02 Score=29.36 Aligned_cols=69 Identities=19% Similarity=0.342 Sum_probs=33.6
Q ss_pred HHhHHHHHHHHHHHHhcccccCC-CchhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047385 371 RLDVENVNLLEELFIMEGIILDP-NSVEDLDLAFEDVTLQTITSLQHMVEDLVRAVEELKSENKALKTRIA 440 (483)
Q Consensus 371 ~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~l~~~~~ 440 (483)
+|+..+.+++.+|....+++... .....++..+... .++...++..++++.+...|.+.|...|-.+++
T Consensus 103 qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~-~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELa 172 (401)
T PF06785_consen 103 QLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHL-REENQCLQLQLDALQQECGEKEEESQTLNRELA 172 (401)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHH
Confidence 45556777888877655543322 2223333222111 122233455556666666555555555544443
No 272
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=48.61 E-value=1.3e+02 Score=24.39 Aligned_cols=26 Identities=27% Similarity=0.403 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047385 416 HMVEDLVRAVEELKSENKALKTRIAA 441 (483)
Q Consensus 416 ~~~~~l~~~~~~~~~e~~~l~~~~~~ 441 (483)
..+.=|+..+++++..|..|..+++.
T Consensus 18 dtI~LLqmEieELKekn~~L~~e~~~ 43 (79)
T PRK15422 18 DTITLLQMEIEELKEKNNSLSQEVQN 43 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555444
No 273
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=48.50 E-value=17 Score=41.39 Aligned_cols=21 Identities=43% Similarity=0.670 Sum_probs=19.8
Q ss_pred cCcceEEEeeCCCCCCcccee
Q 047385 76 NGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 76 ~G~n~ti~ayG~tgSGKT~Tm 96 (483)
.|.|-||+.-|.+|||||.+.
T Consensus 83 ~~~~QsIiiSGESGaGKTes~ 103 (691)
T cd01380 83 DEKNQSIIVSGESGAGKTVSA 103 (691)
T ss_pred cCCCceEEEEcCCCCCchHHH
Confidence 799999999999999999875
No 274
>PHA03155 hypothetical protein; Provisional
Probab=48.43 E-value=46 Score=28.71 Aligned_cols=26 Identities=42% Similarity=0.580 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047385 417 MVEDLVRAVEELKSENKALKTRIAAA 442 (483)
Q Consensus 417 ~~~~l~~~~~~~~~e~~~l~~~~~~~ 442 (483)
.+|+|..+++.|+-||..||.++.+-
T Consensus 9 tvEeLaaeL~kL~~ENK~LKkkl~~~ 34 (115)
T PHA03155 9 DVEELEKELQKLKIENKALKKKLLQH 34 (115)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 35788889999999999999999764
No 275
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=48.11 E-value=7.2 Score=36.52 Aligned_cols=15 Identities=33% Similarity=0.417 Sum_probs=12.3
Q ss_pred EEeeCCCCCCcccee
Q 047385 82 VITYGQTGAGKTFSM 96 (483)
Q Consensus 82 i~ayG~tgSGKT~Tm 96 (483)
|.-.|++|||||++-
T Consensus 2 IgI~G~sgSGKTTla 16 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLA 16 (194)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 556899999999873
No 276
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=48.07 E-value=17 Score=38.54 Aligned_cols=18 Identities=39% Similarity=0.589 Sum_probs=15.5
Q ss_pred eEEEeeCCCCCCccceec
Q 047385 80 GTVITYGQTGAGKTFSME 97 (483)
Q Consensus 80 ~ti~ayG~tgSGKT~Tm~ 97 (483)
..|+-.|++|+|||+|+.
T Consensus 242 ~vI~LVGptGvGKTTTia 259 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLA 259 (436)
T ss_pred cEEEEECCCCCcHHHHHH
Confidence 467889999999999974
No 277
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=48.04 E-value=90 Score=23.68 Aligned_cols=32 Identities=41% Similarity=0.470 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047385 410 TITSLQHMVEDLVRAVEELKSENKALKTRIAA 441 (483)
Q Consensus 410 ~~~~~~~~~~~l~~~~~~~~~e~~~l~~~~~~ 441 (483)
.+..|+..+..|......|..++..|+.++..
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~ 58 (64)
T PF00170_consen 27 YIEELEEKVEELESENEELKKELEQLKKEIQS 58 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444443
No 278
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=48.04 E-value=7.1 Score=39.88 Aligned_cols=18 Identities=33% Similarity=0.545 Sum_probs=15.2
Q ss_pred EEEeeCCCCCCccceecC
Q 047385 81 TVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm~G 98 (483)
+|+-.|.||||||++|.-
T Consensus 145 siii~G~t~sGKTt~lna 162 (312)
T COG0630 145 SIIICGGTASGKTTLLNA 162 (312)
T ss_pred cEEEECCCCCCHHHHHHH
Confidence 467799999999999854
No 279
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=47.82 E-value=13 Score=38.57 Aligned_cols=45 Identities=27% Similarity=0.375 Sum_probs=29.3
Q ss_pred eeEeecEEecCCCchHHHHHHHHHHHHHHhhcCcceEEEeeCCCCCCccceec
Q 047385 45 FKFGFDRVFYEKSEQAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSME 97 (483)
Q Consensus 45 ~~F~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm~ 97 (483)
..|.|+.|-+ |+++=..... .+.+-.-+.|+.+|.+|||||+.+-
T Consensus 12 ~~~pf~~ivG----q~~~k~al~~----~~~~p~~~~vli~G~~GtGKs~~ar 56 (350)
T CHL00081 12 PVFPFTAIVG----QEEMKLALIL----NVIDPKIGGVMIMGDRGTGKSTTIR 56 (350)
T ss_pred CCCCHHHHhC----hHHHHHHHHH----hccCCCCCeEEEEcCCCCCHHHHHH
Confidence 3688888866 5554444333 3333222457789999999999863
No 280
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=47.73 E-value=7.6 Score=32.57 Aligned_cols=15 Identities=33% Similarity=0.707 Sum_probs=12.9
Q ss_pred EEeeCCCCCCcccee
Q 047385 82 VITYGQTGAGKTFSM 96 (483)
Q Consensus 82 i~ayG~tgSGKT~Tm 96 (483)
|+..|..|+|||..+
T Consensus 2 I~V~G~~g~GKTsLi 16 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLI 16 (119)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECcCCCCHHHHH
Confidence 677899999999765
No 281
>CHL00176 ftsH cell division protein; Validated
Probab=47.72 E-value=9.2 Score=43.01 Aligned_cols=16 Identities=38% Similarity=0.582 Sum_probs=14.3
Q ss_pred EEEeeCCCCCCcccee
Q 047385 81 TVITYGQTGAGKTFSM 96 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm 96 (483)
.|+-||++|+|||+..
T Consensus 218 gVLL~GPpGTGKT~LA 233 (638)
T CHL00176 218 GVLLVGPPGTGKTLLA 233 (638)
T ss_pred eEEEECCCCCCHHHHH
Confidence 5888999999999875
No 282
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=47.62 E-value=15 Score=38.20 Aligned_cols=19 Identities=26% Similarity=0.363 Sum_probs=15.7
Q ss_pred cceEEEeeCCCCCCcccee
Q 047385 78 MNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 78 ~n~ti~ayG~tgSGKT~Tm 96 (483)
..-+++-||+.|+|||++.
T Consensus 37 ~~h~~L~~Gp~G~GKTtla 55 (363)
T PRK14961 37 IHHAWLLSGTRGVGKTTIA 55 (363)
T ss_pred CCeEEEEecCCCCCHHHHH
Confidence 4556788999999999865
No 283
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=47.57 E-value=7.9 Score=41.97 Aligned_cols=19 Identities=37% Similarity=0.525 Sum_probs=15.6
Q ss_pred eEEEeeCCCCCCccceecC
Q 047385 80 GTVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 80 ~ti~ayG~tgSGKT~Tm~G 98 (483)
..+.-.|++|+|||+|+.-
T Consensus 257 ~Vi~LvGpnGvGKTTTiaK 275 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAK 275 (484)
T ss_pred cEEEEECCCCccHHHHHHH
Confidence 4567789999999999843
No 284
>CHL00181 cbbX CbbX; Provisional
Probab=47.46 E-value=8.5 Score=38.76 Aligned_cols=15 Identities=33% Similarity=0.406 Sum_probs=13.1
Q ss_pred EEeeCCCCCCcccee
Q 047385 82 VITYGQTGAGKTFSM 96 (483)
Q Consensus 82 i~ayG~tgSGKT~Tm 96 (483)
++-||++|+|||+..
T Consensus 62 ill~G~pGtGKT~lA 76 (287)
T CHL00181 62 MSFTGSPGTGKTTVA 76 (287)
T ss_pred EEEECCCCCCHHHHH
Confidence 677999999999875
No 285
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=47.28 E-value=1.1e+02 Score=28.61 Aligned_cols=36 Identities=25% Similarity=0.262 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 047385 410 TITSLQHMVEDLVRAVEELKSENKALKTRIAAAGKI 445 (483)
Q Consensus 410 ~~~~~~~~~~~l~~~~~~~~~e~~~l~~~~~~~~~~ 445 (483)
....+.+++++++.++.+.+.+.+.||.+.+.++.+
T Consensus 155 ~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~e 190 (192)
T PF05529_consen 155 ENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKE 190 (192)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344567788899999999999999999999988765
No 286
>PRK06217 hypothetical protein; Validated
Probab=47.14 E-value=8.8 Score=35.54 Aligned_cols=14 Identities=29% Similarity=0.451 Sum_probs=12.3
Q ss_pred EEeeCCCCCCccce
Q 047385 82 VITYGQTGAGKTFS 95 (483)
Q Consensus 82 i~ayG~tgSGKT~T 95 (483)
|+-.|.+|||||+.
T Consensus 4 I~i~G~~GsGKSTl 17 (183)
T PRK06217 4 IHITGASGSGTTTL 17 (183)
T ss_pred EEEECCCCCCHHHH
Confidence 77899999999875
No 287
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=47.12 E-value=1.9e+02 Score=31.96 Aligned_cols=28 Identities=21% Similarity=0.494 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhcccc
Q 047385 362 ERILNKLRERLDVENVNLLEELFIMEGII 390 (483)
Q Consensus 362 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 390 (483)
..+|.+.| .|+.+|.+|.-++....+.+
T Consensus 52 A~YIekVR-~LEaqN~~L~~di~~lr~~~ 79 (546)
T KOG0977|consen 52 AVYIEKVR-FLEAQNRKLEHDINLLRGVV 79 (546)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHhhc
Confidence 34455554 46677777766665555443
No 288
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=46.94 E-value=8 Score=38.83 Aligned_cols=16 Identities=31% Similarity=0.385 Sum_probs=13.7
Q ss_pred EEEeeCCCCCCcccee
Q 047385 81 TVITYGQTGAGKTFSM 96 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm 96 (483)
-|+-+|++|+|||+.-
T Consensus 60 ~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVA 75 (284)
T ss_pred eEEEEcCCCCCHHHHH
Confidence 4778999999999874
No 289
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=46.88 E-value=12 Score=41.50 Aligned_cols=24 Identities=38% Similarity=0.522 Sum_probs=18.6
Q ss_pred HHHhhcCcceEEEeeCCCCCCcccee
Q 047385 71 IRDAFNGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 71 v~~~l~G~n~ti~ayG~tgSGKT~Tm 96 (483)
|..+++|.| |++.++||||||.+.
T Consensus 40 ip~~l~G~D--vi~~ApTGSGKTlaf 63 (572)
T PRK04537 40 LPVALPGGD--VAGQAQTGTGKTLAF 63 (572)
T ss_pred HHHHhCCCC--EEEEcCCCCcHHHHH
Confidence 345678988 456889999999764
No 290
>PRK08233 hypothetical protein; Provisional
Probab=46.80 E-value=9 Score=34.87 Aligned_cols=16 Identities=25% Similarity=0.295 Sum_probs=12.5
Q ss_pred EEEeeCCCCCCcccee
Q 047385 81 TVITYGQTGAGKTFSM 96 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm 96 (483)
.|.--|++|||||+..
T Consensus 5 iI~I~G~~GsGKtTla 20 (182)
T PRK08233 5 IITIAAVSGGGKTTLT 20 (182)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3455799999999864
No 291
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=46.80 E-value=12 Score=37.81 Aligned_cols=30 Identities=20% Similarity=0.316 Sum_probs=22.4
Q ss_pred HHHHHHhhcCc---ceEEEeeCCCCCCccceec
Q 047385 68 LPIIRDAFNGM---NGTVITYGQTGAGKTFSME 97 (483)
Q Consensus 68 ~plv~~~l~G~---n~ti~ayG~tgSGKT~Tm~ 97 (483)
.+-+|.++.|- ...+..||++|||||..+.
T Consensus 81 ~~~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~ 113 (310)
T TIGR02236 81 SKELDELLGGGIETQAITEVFGEFGSGKTQICH 113 (310)
T ss_pred CHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHH
Confidence 35577887653 4556789999999998754
No 292
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=46.69 E-value=7.9 Score=41.01 Aligned_cols=19 Identities=32% Similarity=0.559 Sum_probs=15.2
Q ss_pred ceEEEeeCCCCCCccceec
Q 047385 79 NGTVITYGQTGAGKTFSME 97 (483)
Q Consensus 79 n~ti~ayG~tgSGKT~Tm~ 97 (483)
+--++.+|+||||||..|.
T Consensus 42 ~~h~~i~g~tGsGKt~~i~ 60 (410)
T cd01127 42 EAHTMIIGTTGTGKTTQIR 60 (410)
T ss_pred hccEEEEcCCCCCHHHHHH
Confidence 3457889999999998763
No 293
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=46.63 E-value=10 Score=37.86 Aligned_cols=37 Identities=32% Similarity=0.592 Sum_probs=22.2
Q ss_pred hHHHHHHHH-HHHH--HHhh-cCcce--EEEeeCCCCCCccce
Q 047385 59 QAEVFEFLA-LPII--RDAF-NGMNG--TVITYGQTGAGKTFS 95 (483)
Q Consensus 59 Q~~vf~~~~-~plv--~~~l-~G~n~--ti~ayG~tgSGKT~T 95 (483)
|-+-..+++ .|++ +.++ -|..- .|+.||+.|+|||..
T Consensus 185 qieklrevve~pll~perfv~lgidppkgvllygppgtgktl~ 227 (435)
T KOG0729|consen 185 QIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLC 227 (435)
T ss_pred HHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHH
Confidence 444344443 4554 2222 35543 489999999999865
No 294
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=46.63 E-value=14 Score=40.31 Aligned_cols=25 Identities=36% Similarity=0.468 Sum_probs=18.8
Q ss_pred HHHHhhcCcceEEEeeCCCCCCcccee
Q 047385 70 IIRDAFNGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 70 lv~~~l~G~n~ti~ayG~tgSGKT~Tm 96 (483)
.+..++.|.|. ++..+||||||.+.
T Consensus 151 aip~il~g~dv--iv~ApTGSGKTlay 175 (518)
T PLN00206 151 AIPAALSGRSL--LVSADTGSGKTASF 175 (518)
T ss_pred HHHHHhcCCCE--EEEecCCCCccHHH
Confidence 45566788874 66779999999653
No 295
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=46.23 E-value=16 Score=36.05 Aligned_cols=110 Identities=20% Similarity=0.234 Sum_probs=58.1
Q ss_pred HHhhcCcceE-EEeeCCCCCCccceecCCCCCCccccccCchhhhHHHHHHhhhcCCCCcEEEEEEeEEEEecceeeccc
Q 047385 72 RDAFNGMNGT-VITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTVDELFDCMKSSDASVKFTIKLSMVEIYMEKVRDLF 150 (483)
Q Consensus 72 ~~~l~G~n~t-i~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyne~v~DLL 150 (483)
..+++|+-+- |+-||..|+||+.. +..++....... ...+||-.+.+.+|=
T Consensus 77 ~~F~~G~pANnVLLwGaRGtGKSSL--------------------VKA~~~e~~~~g--------lrLVEV~k~dl~~Lp 128 (287)
T COG2607 77 EQFAEGLPANNVLLWGARGTGKSSL--------------------VKALLNEYADEG--------LRLVEVDKEDLATLP 128 (287)
T ss_pred HHHHcCCcccceEEecCCCCChHHH--------------------HHHHHHHHHhcC--------CeEEEEcHHHHhhHH
Confidence 4677888875 88999999999654 445555555542 236788877766652
Q ss_pred CCCCCcceeeeccCC-ceEecCcEEEEecCHHHHHHHHHhhhhccCcccccCCCCCCCceEEE
Q 047385 151 DLSRDNIQIKESRVQ-GILLSGVTEIYVFNSAEALQSLASGISNRAVGETQMNMASSRSHCIY 212 (483)
Q Consensus 151 ~~~~~~l~i~e~~~~-g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if 212 (483)
..- -.++.-+.. -+++.+|+--.=.+.--+++..-.|.-.-.....-.-++|.|-|.+=
T Consensus 129 ~l~---~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNRRHLl~ 188 (287)
T COG2607 129 DLV---ELLRARPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNRRHLLP 188 (287)
T ss_pred HHH---HHHhcCCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCCccccc
Confidence 100 001111111 12344454433333333333333333333334444556677888763
No 296
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=45.91 E-value=15 Score=40.43 Aligned_cols=18 Identities=33% Similarity=0.501 Sum_probs=14.7
Q ss_pred eEEEeeCCCCCCccceec
Q 047385 80 GTVITYGQTGAGKTFSME 97 (483)
Q Consensus 80 ~ti~ayG~tgSGKT~Tm~ 97 (483)
-..+-.||+|+|||||+.
T Consensus 202 ~l~~I~GPPGTGKT~Tlv 219 (649)
T KOG1803|consen 202 DLLIIHGPPGTGKTRTLV 219 (649)
T ss_pred CceEeeCCCCCCceeeHH
Confidence 345668999999999984
No 297
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=45.84 E-value=9.9 Score=34.80 Aligned_cols=16 Identities=25% Similarity=0.438 Sum_probs=13.4
Q ss_pred EEEeeCCCCCCcccee
Q 047385 81 TVITYGQTGAGKTFSM 96 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm 96 (483)
.|+..|++|||||+..
T Consensus 5 ii~i~G~~GsGKsTl~ 20 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQC 20 (188)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4667899999999875
No 298
>PHA02653 RNA helicase NPH-II; Provisional
Probab=45.73 E-value=16 Score=41.48 Aligned_cols=32 Identities=31% Similarity=0.267 Sum_probs=21.3
Q ss_pred chHHHHHHHHHHHHHHhhcCcceEEEeeCCCCCCccce
Q 047385 58 EQAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFS 95 (483)
Q Consensus 58 ~Q~~vf~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~T 95 (483)
-|.++=+. ++..+.+|.+ |+..|+||||||..
T Consensus 164 ~~~~iQ~q----il~~i~~gkd--vIv~A~TGSGKTtq 195 (675)
T PHA02653 164 LQPDVQLK----IFEAWISRKP--VVLTGGTGVGKTSQ 195 (675)
T ss_pred hhHHHHHH----HHHHHHhCCC--EEEECCCCCCchhH
Confidence 34444444 3344556765 47899999999976
No 299
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=45.72 E-value=17 Score=40.83 Aligned_cols=40 Identities=18% Similarity=0.182 Sum_probs=25.3
Q ss_pred cCCCchHHHHHHHHHHHHHHhhcCcceEEEeeCCCCCCccceec
Q 047385 54 YEKSEQAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSME 97 (483)
Q Consensus 54 ~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm~ 97 (483)
.+...|..+...+...+ -......++..|+||||||....
T Consensus 235 ~lt~~Q~~ai~~I~~~~----~~~~~~~~Ll~g~TGSGKT~va~ 274 (630)
T TIGR00643 235 KLTRAQKRVVKEILQDL----KSDVPMNRLLQGDVGSGKTLVAA 274 (630)
T ss_pred CCCHHHHHHHHHHHHHh----ccCCCccEEEECCCCCcHHHHHH
Confidence 44555666665554332 22333457889999999998653
No 300
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=45.52 E-value=14 Score=41.80 Aligned_cols=44 Identities=25% Similarity=0.351 Sum_probs=27.9
Q ss_pred cEEecCCCchHHHHHHHH------HHHHHHhhcCcceEEEeeCCCCCCcccee
Q 047385 50 DRVFYEKSEQAEVFEFLA------LPIIRDAFNGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 50 D~Vf~~~~~Q~~vf~~~~------~plv~~~l~G~n~ti~ayG~tgSGKT~Tm 96 (483)
++-+++++-|..+|..-+ ..++..+| |.|+.|.+ |||+|||+.-
T Consensus 44 ~~~~~~s~~~~~~~p~~~~lR~YQ~eivq~AL-gkNtii~l--PTG~GKTfIA 93 (746)
T KOG0354|consen 44 SHSLDESAAQRWIYPTNLELRNYQEELVQPAL-GKNTIIAL--PTGSGKTFIA 93 (746)
T ss_pred cCCCChhhhccccccCcccccHHHHHHhHHhh-cCCeEEEe--ecCCCccchH
Confidence 444444544444443322 25677888 99986644 9999999863
No 301
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=45.48 E-value=16 Score=34.92 Aligned_cols=29 Identities=24% Similarity=0.288 Sum_probs=21.4
Q ss_pred HHHHHhhc-Cc--ceEEEeeCCCCCCccceec
Q 047385 69 PIIRDAFN-GM--NGTVITYGQTGAGKTFSME 97 (483)
Q Consensus 69 plv~~~l~-G~--n~ti~ayG~tgSGKT~Tm~ 97 (483)
+-+|.++. |+ ..+++.+|++|+|||+...
T Consensus 7 ~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~ 38 (229)
T TIGR03881 7 EGLDKLLEGGIPRGFFVAVTGEPGTGKTIFCL 38 (229)
T ss_pred hhHHHhhcCCCcCCeEEEEECCCCCChHHHHH
Confidence 45677774 54 5578889999999998753
No 302
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=45.46 E-value=9.3 Score=34.93 Aligned_cols=16 Identities=25% Similarity=0.534 Sum_probs=13.2
Q ss_pred EEEeeCCCCCCcccee
Q 047385 81 TVITYGQTGAGKTFSM 96 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm 96 (483)
.|+..|++|||||..+
T Consensus 3 ii~l~G~~GsGKsTl~ 18 (180)
T TIGR03263 3 LIVISGPSGVGKSTLV 18 (180)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4677899999998754
No 303
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=45.45 E-value=5.4 Score=40.86 Aligned_cols=85 Identities=25% Similarity=0.298 Sum_probs=52.5
Q ss_pred ecEEecCCCchHHHHHHHHHHHHHHhh-cCcceEEEeeCCCCCCccceecCCCCCCccccccCchhhhHHHHHH-hhhcC
Q 047385 49 FDRVFYEKSEQAEVFEFLALPIIRDAF-NGMNGTVITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTVDELFD-CMKSS 126 (483)
Q Consensus 49 FD~Vf~~~~~Q~~vf~~~~~plv~~~l-~G~n~ti~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~-~i~~~ 126 (483)
|-.|=..+.++.+-=.+....+|+.++ +|+. +|.||..|.|||+.+.- .+|.--+-.++|. ...+
T Consensus 60 f~~v~a~~~~~~eWdrs~~P~lId~~fr~g~~--~~~~gdsg~GKttllL~----------l~IalaaG~~lfG~~v~e- 126 (402)
T COG3598 60 FIQVQAEAMRLSEWDRSNSPQLIDEFFRKGYV--SILYGDSGVGKTTLLLY----------LCIALAAGKNLFGNKVKE- 126 (402)
T ss_pred eeEehhhhcChhhcCcccChhhhhHHhhcCee--EEEecCCcccHhHHHHH----------HHHHHHhhHHHhcccccC-
Confidence 346666665555444555666777776 5665 47799999999998865 4566666677786 3322
Q ss_pred CCCcEEEEEEeEEEEecceeeccc
Q 047385 127 DASVKFTIKLSMVEIYMEKVRDLF 150 (483)
Q Consensus 127 ~~~~~~~v~vS~~EIyne~v~DLL 150 (483)
+.. .++|| +|.|.|.+.-=|
T Consensus 127 -pGk--vlyvs-lEl~re~~L~Rl 146 (402)
T COG3598 127 -PGK--VLYVS-LELYREDILERL 146 (402)
T ss_pred -CCe--EEEEE-eccChHHHHHHH
Confidence 222 23333 577776654433
No 304
>PRK14532 adenylate kinase; Provisional
Probab=45.31 E-value=10 Score=35.06 Aligned_cols=15 Identities=33% Similarity=0.583 Sum_probs=12.8
Q ss_pred EEEeeCCCCCCccce
Q 047385 81 TVITYGQTGAGKTFS 95 (483)
Q Consensus 81 ti~ayG~tgSGKT~T 95 (483)
.|+..|++|||||+.
T Consensus 2 ~i~~~G~pGsGKsT~ 16 (188)
T PRK14532 2 NLILFGPPAAGKGTQ 16 (188)
T ss_pred EEEEECCCCCCHHHH
Confidence 378899999999875
No 305
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=45.20 E-value=8.5 Score=35.97 Aligned_cols=15 Identities=33% Similarity=0.423 Sum_probs=12.4
Q ss_pred EEeeCCCCCCcccee
Q 047385 82 VITYGQTGAGKTFSM 96 (483)
Q Consensus 82 i~ayG~tgSGKT~Tm 96 (483)
|.-.|++|||||+++
T Consensus 2 igi~G~~GsGKSTl~ 16 (198)
T cd02023 2 IGIAGGSGSGKTTVA 16 (198)
T ss_pred EEEECCCCCCHHHHH
Confidence 445799999999886
No 306
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=45.07 E-value=20 Score=38.18 Aligned_cols=18 Identities=44% Similarity=0.582 Sum_probs=14.9
Q ss_pred eEEEeeCCCCCCccceec
Q 047385 80 GTVITYGQTGAGKTFSME 97 (483)
Q Consensus 80 ~ti~ayG~tgSGKT~Tm~ 97 (483)
..++..|++|+|||+|..
T Consensus 224 ~vi~lvGptGvGKTTtaa 241 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIA 241 (432)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457778999999999964
No 307
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=44.98 E-value=10 Score=38.53 Aligned_cols=81 Identities=21% Similarity=0.374 Sum_probs=49.4
Q ss_pred eecEEecCCCchHHHHHHHHHHH-HHHhhcCcc---eEEEeeCCCCCCccceecCCCCCC-------cc----ccccCch
Q 047385 48 GFDRVFYEKSEQAEVFEFLALPI-IRDAFNGMN---GTVITYGQTGAGKTFSMEGPSILA-------CD----EQKKGLL 112 (483)
Q Consensus 48 ~FD~Vf~~~~~Q~~vf~~~~~pl-v~~~l~G~n---~ti~ayG~tgSGKT~Tm~G~~~~~-------~~----~~~~Gii 112 (483)
.++.|-+-+..-+.+=+.+..|+ ..++|.|.- ..|+.||+.|+||+|.----.... ++ ..=-|=-
T Consensus 131 kWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGES 210 (439)
T KOG0739|consen 131 KWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGES 210 (439)
T ss_pred chhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhccH
Confidence 44556655555555666666665 367777765 469999999999999542200000 00 0112445
Q ss_pred hhhHHHHHHhhhcCCC
Q 047385 113 QRTVDELFDCMKSSDA 128 (483)
Q Consensus 113 pr~~~~LF~~i~~~~~ 128 (483)
.+.+..||+...+..+
T Consensus 211 EkLVknLFemARe~kP 226 (439)
T KOG0739|consen 211 EKLVKNLFEMARENKP 226 (439)
T ss_pred HHHHHHHHHHHHhcCC
Confidence 5788999998877644
No 308
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=44.91 E-value=13 Score=40.13 Aligned_cols=26 Identities=27% Similarity=0.441 Sum_probs=19.7
Q ss_pred HHHHHhhcCcceEEEeeCCCCCCcccee
Q 047385 69 PIIRDAFNGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 69 plv~~~l~G~n~ti~ayG~tgSGKT~Tm 96 (483)
..+..+++|.|.. ...+||||||.+.
T Consensus 116 ~ai~~~~~G~dvi--~~apTGSGKTlay 141 (475)
T PRK01297 116 QVLGYTLAGHDAI--GRAQTGTGKTAAF 141 (475)
T ss_pred HHHHHHhCCCCEE--EECCCCChHHHHH
Confidence 4566778998864 4669999999664
No 309
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=44.79 E-value=18 Score=38.39 Aligned_cols=27 Identities=26% Similarity=0.383 Sum_probs=24.0
Q ss_pred HHHHhhcCcceEEEeeCCCCCCcccee
Q 047385 70 IIRDAFNGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 70 lv~~~l~G~n~ti~ayG~tgSGKT~Tm 96 (483)
-++.+-+|....-|..|.-||||||.+
T Consensus 40 ~l~~v~~G~s~~kfi~G~YGsGKTf~l 66 (416)
T PF10923_consen 40 DLDRVADGGSSFKFIRGEYGSGKTFFL 66 (416)
T ss_pred HHHHHhCCCCeEEEEEeCCCCcHHHHH
Confidence 357788999999999999999999986
No 310
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=44.74 E-value=11 Score=32.95 Aligned_cols=15 Identities=27% Similarity=0.468 Sum_probs=12.4
Q ss_pred EEeeCCCCCCcccee
Q 047385 82 VITYGQTGAGKTFSM 96 (483)
Q Consensus 82 i~ayG~tgSGKT~Tm 96 (483)
|+-.|++|||||..-
T Consensus 2 I~i~G~~GsGKst~a 16 (147)
T cd02020 2 IAIDGPAGSGKSTVA 16 (147)
T ss_pred EEEECCCCCCHHHHH
Confidence 567899999998753
No 311
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=44.71 E-value=19 Score=37.20 Aligned_cols=40 Identities=30% Similarity=0.487 Sum_probs=29.4
Q ss_pred cCCCchHHHHHHHHHHHHHHhhcCcceEEEeeCCCCCCccceec
Q 047385 54 YEKSEQAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSME 97 (483)
Q Consensus 54 ~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm~ 97 (483)
+-...|..++.-+- ..++.|-.-.|+-.|+.|||||+.+-
T Consensus 28 g~~~~~~~l~~~lk----qt~~~gEsnsviiigprgsgkT~li~ 67 (408)
T KOG2228|consen 28 GVQDEQKHLSELLK----QTILHGESNSVIIIGPRGSGKTILID 67 (408)
T ss_pred ehHHHHHHHHHHHH----HHHHhcCCCceEEEccCCCCceEeeH
Confidence 33445666665533 45567888889999999999999873
No 312
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=44.68 E-value=10 Score=34.70 Aligned_cols=15 Identities=33% Similarity=0.426 Sum_probs=12.8
Q ss_pred EEeeCCCCCCcccee
Q 047385 82 VITYGQTGAGKTFSM 96 (483)
Q Consensus 82 i~ayG~tgSGKT~Tm 96 (483)
++.+|++|+|||...
T Consensus 2 ~li~G~~G~GKT~l~ 16 (187)
T cd01124 2 TLLSGGPGTGKTTFA 16 (187)
T ss_pred EEEEcCCCCCHHHHH
Confidence 577999999999864
No 313
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=44.66 E-value=12 Score=40.42 Aligned_cols=18 Identities=22% Similarity=0.407 Sum_probs=15.3
Q ss_pred EEEeeCCCCCCccceecC
Q 047385 81 TVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm~G 98 (483)
.|+-+|++|||||+.|-+
T Consensus 34 iv~L~G~SGsGKSTLLr~ 51 (504)
T TIGR03238 34 LLFLCGSSGDGKSEILAE 51 (504)
T ss_pred EEEEECCCCCCHHHHHhc
Confidence 467799999999999874
No 314
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=44.62 E-value=15 Score=36.09 Aligned_cols=25 Identities=28% Similarity=0.539 Sum_probs=18.3
Q ss_pred HHHhhcC---cceEEEeeCCCCCCccce
Q 047385 71 IRDAFNG---MNGTVITYGQTGAGKTFS 95 (483)
Q Consensus 71 v~~~l~G---~n~ti~ayG~tgSGKT~T 95 (483)
+|.++.| ....++.+|.+|||||..
T Consensus 12 lD~~l~GG~p~g~~~lI~G~pGsGKT~f 39 (260)
T COG0467 12 LDEILGGGLPRGSVVLITGPPGTGKTIF 39 (260)
T ss_pred hHHHhcCCCcCCcEEEEEcCCCCcHHHH
Confidence 4555653 355678899999999864
No 315
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=44.57 E-value=17 Score=35.19 Aligned_cols=27 Identities=26% Similarity=0.564 Sum_probs=20.0
Q ss_pred HHHHHhhc-Cc--ceEEEeeCCCCCCccce
Q 047385 69 PIIRDAFN-GM--NGTVITYGQTGAGKTFS 95 (483)
Q Consensus 69 plv~~~l~-G~--n~ti~ayG~tgSGKT~T 95 (483)
+-+|.++. |+ ..+++.+|++|||||..
T Consensus 8 ~~LD~~l~GG~~~gs~~lI~G~pGsGKT~l 37 (237)
T TIGR03877 8 PGMDEILHGGIPERNVVLLSGGPGTGKSIF 37 (237)
T ss_pred HhHHHHhcCCCcCCeEEEEEcCCCCCHHHH
Confidence 44677665 44 45788899999999864
No 316
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=44.40 E-value=2.3e+02 Score=31.24 Aligned_cols=21 Identities=24% Similarity=0.447 Sum_probs=13.2
Q ss_pred hhHHHHHHHHHhhhhcccccc
Q 047385 456 GYASIVHKISDRLSHLVSWIW 476 (483)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~ 476 (483)
.+...|.++..+++.|.+-+|
T Consensus 343 ~l~r~l~~i~~~~d~l~k~vw 363 (581)
T KOG0995|consen 343 KLKRELNKIQSELDRLSKEVW 363 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 356666666666666666555
No 317
>TIGR02746 TraC-F-type type-IV secretion system protein TraC. The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Probab=44.39 E-value=8.8 Score=44.15 Aligned_cols=19 Identities=42% Similarity=0.686 Sum_probs=15.4
Q ss_pred ceEEEeeCCCCCCccceec
Q 047385 79 NGTVITYGQTGAGKTFSME 97 (483)
Q Consensus 79 n~ti~ayG~tgSGKT~Tm~ 97 (483)
|..++..|.||||||++|-
T Consensus 430 n~n~~I~G~tGsGKS~~~~ 448 (797)
T TIGR02746 430 NYNIAVVGGSGAGKSFFMQ 448 (797)
T ss_pred ccceEEEcCCCCCHHHHHH
Confidence 3445778999999999983
No 318
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=44.34 E-value=1.1e+02 Score=26.11 Aligned_cols=30 Identities=27% Similarity=0.334 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047385 413 SLQHMVEDLVRAVEELKSENKALKTRIAAA 442 (483)
Q Consensus 413 ~~~~~~~~l~~~~~~~~~e~~~l~~~~~~~ 442 (483)
...++++-|+.+|.++...|.+|+++-..|
T Consensus 64 AVREEVe~Lk~qI~eL~er~~~Le~EN~lL 93 (123)
T KOG4797|consen 64 AVREEVEVLKEQIRELEERNSALERENSLL 93 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555655555555555554444
No 319
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=44.17 E-value=2.2e+02 Score=28.44 Aligned_cols=52 Identities=17% Similarity=0.252 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhcchhhHHHHHHHHHhhhhcc
Q 047385 413 SLQHMVEDLVRAVEELKSENKALKTRIAAAGKIDAFHKEAGENGYASIVHKISDRLSHLV 472 (483)
Q Consensus 413 ~~~~~~~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (483)
.+......|..+|+..+.|.++.+++++.++... -.|-.=..+++.+|..+-
T Consensus 187 ~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vR--------PAfmdEyEklE~EL~~lY 238 (267)
T PF10234_consen 187 NLASDEANLEAKIEKKKQELERNQKRLQSLQSVR--------PAFMDEYEKLEEELQKLY 238 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------hHHHHHHHHHHHHHHHHH
Confidence 3333444455566666666666666666665432 123334455555555543
No 320
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=44.08 E-value=9.5 Score=41.68 Aligned_cols=14 Identities=50% Similarity=0.923 Sum_probs=0.0
Q ss_pred EEeeCCCCCCccce
Q 047385 82 VITYGQTGAGKTFS 95 (483)
Q Consensus 82 i~ayG~tgSGKT~T 95 (483)
|+-||++|+|||++
T Consensus 219 ILLyGPPGTGKT~L 232 (512)
T TIGR03689 219 VLLYGPPGCGKTLI 232 (512)
T ss_pred eEEECCCCCcHHHH
No 321
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=43.96 E-value=66 Score=31.16 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 047385 417 MVEDLVRAVEELKSENKALKTRIAA 441 (483)
Q Consensus 417 ~~~~l~~~~~~~~~e~~~l~~~~~~ 441 (483)
.+++++.+++++.+|++.|..++..
T Consensus 136 ~~ee~kekl~E~~~EkeeL~~elee 160 (290)
T COG4026 136 DYEELKEKLEELQKEKEELLKELEE 160 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444333333
No 322
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=43.90 E-value=98 Score=31.67 Aligned_cols=19 Identities=16% Similarity=0.190 Sum_probs=11.1
Q ss_pred hhhHHHHHHHHHhhhhccc
Q 047385 455 NGYASIVHKISDRLSHLVS 473 (483)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~ 473 (483)
..+..++.....+|..|.+
T Consensus 116 ~sl~~q~~~~~~~L~~L~k 134 (314)
T PF04111_consen 116 DSLKNQYEYASNQLDRLRK 134 (314)
T ss_dssp HHHHHHHHHHHHHHHCHHT
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3355566666666666653
No 323
>CHL00195 ycf46 Ycf46; Provisional
Probab=43.88 E-value=10 Score=41.29 Aligned_cols=17 Identities=24% Similarity=0.513 Sum_probs=14.6
Q ss_pred eEEEeeCCCCCCcccee
Q 047385 80 GTVITYGQTGAGKTFSM 96 (483)
Q Consensus 80 ~ti~ayG~tgSGKT~Tm 96 (483)
-.|+-||++|+|||++.
T Consensus 260 kGILL~GPpGTGKTllA 276 (489)
T CHL00195 260 RGLLLVGIQGTGKSLTA 276 (489)
T ss_pred ceEEEECCCCCcHHHHH
Confidence 45899999999999774
No 324
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=43.86 E-value=25 Score=39.83 Aligned_cols=20 Identities=30% Similarity=0.624 Sum_probs=16.9
Q ss_pred CcceEEEeeCCCCCCcccee
Q 047385 77 GMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 77 G~n~ti~ayG~tgSGKT~Tm 96 (483)
...+.|+-||++|+||||..
T Consensus 699 r~~~giLLyGppGcGKT~la 718 (952)
T KOG0735|consen 699 RLRTGILLYGPPGCGKTLLA 718 (952)
T ss_pred ccccceEEECCCCCcHHHHH
Confidence 45567999999999999975
No 325
>PRK06762 hypothetical protein; Provisional
Probab=43.75 E-value=12 Score=33.86 Aligned_cols=15 Identities=40% Similarity=0.627 Sum_probs=12.2
Q ss_pred EEEeeCCCCCCccce
Q 047385 81 TVITYGQTGAGKTFS 95 (483)
Q Consensus 81 ti~ayG~tgSGKT~T 95 (483)
.|.-.|.+|||||+.
T Consensus 4 li~i~G~~GsGKST~ 18 (166)
T PRK06762 4 LIIIRGNSGSGKTTI 18 (166)
T ss_pred EEEEECCCCCCHHHH
Confidence 466689999999874
No 326
>PRK00300 gmk guanylate kinase; Provisional
Probab=43.39 E-value=12 Score=35.12 Aligned_cols=17 Identities=29% Similarity=0.448 Sum_probs=13.5
Q ss_pred eEEEeeCCCCCCcccee
Q 047385 80 GTVITYGQTGAGKTFSM 96 (483)
Q Consensus 80 ~ti~ayG~tgSGKT~Tm 96 (483)
..|.-.|++|||||..+
T Consensus 6 ~~i~i~G~sGsGKstl~ 22 (205)
T PRK00300 6 LLIVLSGPSGAGKSTLV 22 (205)
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45677899999999654
No 327
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=43.22 E-value=12 Score=37.43 Aligned_cols=19 Identities=26% Similarity=0.497 Sum_probs=14.8
Q ss_pred eEEEeeCCCCCCccceecC
Q 047385 80 GTVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 80 ~ti~ayG~tgSGKT~Tm~G 98 (483)
.+|...|++|+|||.|..-
T Consensus 73 ~vi~l~G~~G~GKTTt~ak 91 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAK 91 (272)
T ss_pred eEEEEECCCCCcHHHHHHH
Confidence 4555669999999999743
No 328
>PHA03162 hypothetical protein; Provisional
Probab=43.21 E-value=40 Score=29.83 Aligned_cols=27 Identities=41% Similarity=0.575 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047385 416 HMVEDLVRAVEELKSENKALKTRIAAA 442 (483)
Q Consensus 416 ~~~~~l~~~~~~~~~e~~~l~~~~~~~ 442 (483)
..+|+|..++..|+-||..||.++..-
T Consensus 13 ~tmEeLaaeL~kLqmENK~LKkkl~~~ 39 (135)
T PHA03162 13 PTMEDLAAEIAKLQLENKALKKKIKEG 39 (135)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 457889999999999999999999654
No 329
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=43.18 E-value=10 Score=39.89 Aligned_cols=19 Identities=37% Similarity=0.485 Sum_probs=15.7
Q ss_pred eEEEeeCCCCCCccceecC
Q 047385 80 GTVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 80 ~ti~ayG~tgSGKT~Tm~G 98 (483)
-.|.-.|++|+|||+|+..
T Consensus 207 ~ii~lvGptGvGKTTt~ak 225 (407)
T PRK12726 207 RIISLIGQTGVGKTTTLVK 225 (407)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3567789999999999855
No 330
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=43.17 E-value=61 Score=24.60 Aligned_cols=29 Identities=24% Similarity=0.385 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047385 411 ITSLQHMVEDLVRAVEELKSENKALKTRI 439 (483)
Q Consensus 411 ~~~~~~~~~~l~~~~~~~~~e~~~l~~~~ 439 (483)
+.-|+..+.+|..++.+++.||..||..+
T Consensus 16 VevLK~~I~eL~~~n~~Le~EN~~Lk~~~ 44 (59)
T PF01166_consen 16 VEVLKEQIAELEERNSQLEEENNLLKQNA 44 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34456667778888888888888887654
No 331
>PRK09039 hypothetical protein; Validated
Probab=43.16 E-value=2.3e+02 Score=29.30 Aligned_cols=28 Identities=25% Similarity=0.299 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 047385 416 HMVEDLVRAVEELKSENKALKTRIAAAG 443 (483)
Q Consensus 416 ~~~~~l~~~~~~~~~e~~~l~~~~~~~~ 443 (483)
....+....+..+..+.+.||.++..++
T Consensus 130 ~~~se~~~~V~~L~~qI~aLr~Qla~le 157 (343)
T PRK09039 130 QVSARALAQVELLNQQIAALRRQLAALE 157 (343)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444443
No 332
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=43.12 E-value=10 Score=35.17 Aligned_cols=16 Identities=25% Similarity=0.455 Sum_probs=12.9
Q ss_pred EEEeeCCCCCCcccee
Q 047385 81 TVITYGQTGAGKTFSM 96 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm 96 (483)
.|+-.|++|||||..+
T Consensus 4 ~i~l~G~sGsGKsTl~ 19 (186)
T PRK10078 4 LIWLMGPSGSGKDSLL 19 (186)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4566899999998764
No 333
>TIGR03744 traC_PFL_4706 conjugative transfer ATPase, PFL_4706 family. Members of this protein family are predicted ATP-binding proteins apparently associated with DNA conjugal transfer. Members are found both in plasmids and in bacterial chromosomal regions that appear to derive from integrative elements such as conjugative transposons. More distant homologs, outside the scope of this family, include type IV secretion/conjugal transfer proteins such as TraC, VirB4 and TrsE. The granularity of this protein family definition is chosen so as to represent one distinctive clade and act as a marker through which to define and recognize the class of mobile element it serves.
Probab=43.10 E-value=9.4 Score=44.71 Aligned_cols=20 Identities=35% Similarity=0.629 Sum_probs=16.9
Q ss_pred cceEEEeeCCCCCCccceec
Q 047385 78 MNGTVITYGQTGAGKTFSME 97 (483)
Q Consensus 78 ~n~ti~ayG~tgSGKT~Tm~ 97 (483)
.|+-.+..|+||||||++|-
T Consensus 474 ~n~n~~I~G~TGSGKS~l~~ 493 (893)
T TIGR03744 474 KNAHLLILGPTGAGKSATLT 493 (893)
T ss_pred CcccEEEECCCCCCHHHHHH
Confidence 46677889999999999983
No 334
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]
Probab=42.97 E-value=18 Score=37.44 Aligned_cols=29 Identities=34% Similarity=0.564 Sum_probs=21.4
Q ss_pred HHHHHhhcCcc---eEEEeeCCCCCCccceecC
Q 047385 69 PIIRDAFNGMN---GTVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 69 plv~~~l~G~n---~ti~ayG~tgSGKT~Tm~G 98 (483)
|.++..+.|.- -||| .|+||||||.-|.-
T Consensus 261 pvLNk~LkGhR~GElTvl-TGpTGsGKTTFlsE 292 (514)
T KOG2373|consen 261 PVLNKYLKGHRPGELTVL-TGPTGSGKTTFLSE 292 (514)
T ss_pred hHHHHHhccCCCCceEEE-ecCCCCCceeEehH
Confidence 66777787754 3555 59999999988743
No 335
>PRK04040 adenylate kinase; Provisional
Probab=42.77 E-value=11 Score=35.37 Aligned_cols=16 Identities=38% Similarity=0.592 Sum_probs=13.7
Q ss_pred EEEeeCCCCCCcccee
Q 047385 81 TVITYGQTGAGKTFSM 96 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm 96 (483)
.|+.+|.+|||||+..
T Consensus 4 ~i~v~G~pG~GKtt~~ 19 (188)
T PRK04040 4 VVVVTGVPGVGKTTVL 19 (188)
T ss_pred EEEEEeCCCCCHHHHH
Confidence 4778999999999865
No 336
>PHA01747 putative ATP-dependent protease
Probab=42.75 E-value=12 Score=39.10 Aligned_cols=31 Identities=23% Similarity=0.377 Sum_probs=26.1
Q ss_pred HHHHHHHhhcCcceEEEeeCCCCCCccceec
Q 047385 67 ALPIIRDAFNGMNGTVITYGQTGAGKTFSME 97 (483)
Q Consensus 67 ~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm~ 97 (483)
.-|+|+.-..+-|.-++=.|+.|+||||+..
T Consensus 178 LiPlVE~~~~~~NyNliELgPRGTGKS~~f~ 208 (425)
T PHA01747 178 LLPLFTSPVSKRPVHIIELSNRGTGKTTTFV 208 (425)
T ss_pred hhhheeccCCCCCeeEEEecCCCCChhhHHH
Confidence 4588886667888889999999999999864
No 337
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=42.60 E-value=11 Score=40.19 Aligned_cols=19 Identities=37% Similarity=0.522 Sum_probs=15.7
Q ss_pred ceEEEeeCCCCCCccceec
Q 047385 79 NGTVITYGQTGAGKTFSME 97 (483)
Q Consensus 79 n~ti~ayG~tgSGKT~Tm~ 97 (483)
+..|...|++|+|||+|+-
T Consensus 191 g~vi~lvGpnG~GKTTtla 209 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTA 209 (420)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3467778999999999984
No 338
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=42.52 E-value=22 Score=40.15 Aligned_cols=21 Identities=29% Similarity=0.474 Sum_probs=19.5
Q ss_pred cCcceEEEeeCCCCCCcccee
Q 047385 76 NGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 76 ~G~n~ti~ayG~tgSGKT~Tm 96 (483)
.+.|-||+.-|.+|||||.|+
T Consensus 83 ~~~~QsIiisGESGsGKTet~ 103 (653)
T cd01379 83 YNQDQCIVISGESGSGKTESA 103 (653)
T ss_pred cCCCceEEEecCCCCCchHHH
Confidence 589999999999999999986
No 339
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=42.42 E-value=17 Score=39.76 Aligned_cols=43 Identities=23% Similarity=0.263 Sum_probs=29.6
Q ss_pred EeecEEecCCCchHHHHHHHHHHHHHHhhcCcceEEEeeCCCCCCccce
Q 047385 47 FGFDRVFYEKSEQAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFS 95 (483)
Q Consensus 47 F~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~T 95 (483)
+.||.+++.+..=.++.+.+ ..+ ...+..|+-+|.+||||++.
T Consensus 193 ~~~~~liG~s~~~~~~~~~~-----~~~-a~~~~pvli~Ge~GtGK~~l 235 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQA-----RVV-ARSNSTVLLRGESGTGKELI 235 (534)
T ss_pred CccCceEECCHHHHHHHHHH-----HHH-hCcCCCEEEECCCCccHHHH
Confidence 68888888755444444332 222 35677889999999999765
No 340
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=42.35 E-value=24 Score=34.68 Aligned_cols=30 Identities=20% Similarity=0.088 Sum_probs=21.7
Q ss_pred HHHHHHHhhc--CcceEEEeeCCCCCCcccee
Q 047385 67 ALPIIRDAFN--GMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 67 ~~plv~~~l~--G~n~ti~ayG~tgSGKT~Tm 96 (483)
+..+.+.+.+ .-...|.-+|..|.|||...
T Consensus 5 ~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA 36 (287)
T PF00931_consen 5 IEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLA 36 (287)
T ss_dssp HHHHHHHHHTTTTSSEEEEEEESTTSSHHHHH
T ss_pred HHHHHHHhhCCCCCeEEEEEEcCCcCCcceee
Confidence 3445555555 56667889999999999764
No 341
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=42.29 E-value=10 Score=33.57 Aligned_cols=15 Identities=27% Similarity=0.609 Sum_probs=11.5
Q ss_pred EEeeCCCCCCcccee
Q 047385 82 VITYGQTGAGKTFSM 96 (483)
Q Consensus 82 i~ayG~tgSGKT~Tm 96 (483)
|.-.|++|||||..+
T Consensus 2 i~i~GpsGsGKstl~ 16 (137)
T cd00071 2 IVLSGPSGVGKSTLL 16 (137)
T ss_pred EEEECCCCCCHHHHH
Confidence 455799999998643
No 342
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=42.10 E-value=13 Score=35.52 Aligned_cols=16 Identities=31% Similarity=0.534 Sum_probs=13.7
Q ss_pred EEEeeCCCCCCcccee
Q 047385 81 TVITYGQTGAGKTFSM 96 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm 96 (483)
.|+..|.||||||.+.
T Consensus 2 ~IlllG~tGsGKSs~~ 17 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLG 17 (212)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5888999999999763
No 343
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=42.06 E-value=18 Score=39.55 Aligned_cols=42 Identities=29% Similarity=0.521 Sum_probs=30.2
Q ss_pred eeEeecEEecCCCchHHHHHHHHHHHHHHhhcCcceEEEeeCCCCCCc
Q 047385 45 FKFGFDRVFYEKSEQAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGK 92 (483)
Q Consensus 45 ~~F~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~ayG~tgSGK 92 (483)
..|+||.+.+....=.++-+. -.-..+.+++|+-+|.||+||
T Consensus 240 a~y~f~~Iig~S~~m~~~~~~------akr~A~tdstVLi~GESGTGK 281 (560)
T COG3829 240 AKYTFDDIIGESPAMLRVLEL------AKRIAKTDSTVLILGESGTGK 281 (560)
T ss_pred cccchhhhccCCHHHHHHHHH------HHhhcCCCCcEEEecCCCccH
Confidence 468999999875542222221 133579999999999999999
No 344
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=41.98 E-value=10 Score=32.41 Aligned_cols=16 Identities=19% Similarity=0.470 Sum_probs=13.4
Q ss_pred EEEeeCCCCCCcccee
Q 047385 81 TVITYGQTGAGKTFSM 96 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm 96 (483)
-|..+|.+|||||..+
T Consensus 3 ki~~~G~~~~GKstl~ 18 (161)
T TIGR00231 3 KIVIVGDPNVGKSTLL 18 (161)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3667899999999876
No 345
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=41.95 E-value=17 Score=41.10 Aligned_cols=44 Identities=20% Similarity=0.303 Sum_probs=28.4
Q ss_pred EeecEEecCCCchHHHHHHHHHHHHHHhhcCcceEEEeeCCCCCCcccee
Q 047385 47 FGFDRVFYEKSEQAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 47 F~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm 96 (483)
+.|+.+++....-..+.+.+. . +...+..|+-+|.+|||||+.-
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~-----~-~a~~~~pVLI~GE~GTGK~~lA 416 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVE-----M-VAQSDSTVLILGETGTGKELIA 416 (686)
T ss_pred ccccceeecCHHHHHHHHHHH-----H-HhCCCCCEEEECCCCcCHHHHH
Confidence 567777765544344443322 2 3356678899999999998753
No 346
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=41.88 E-value=23 Score=40.68 Aligned_cols=21 Identities=38% Similarity=0.562 Sum_probs=19.7
Q ss_pred cCcceEEEeeCCCCCCcccee
Q 047385 76 NGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 76 ~G~n~ti~ayG~tgSGKT~Tm 96 (483)
.|.|-||+.-|.+|||||.|.
T Consensus 83 ~~~~QsIiiSGESGAGKTe~t 103 (767)
T cd01386 83 TRRDQSIIFLGRSGAGKTTSC 103 (767)
T ss_pred cCCCceEEEecCCCCCcHHHH
Confidence 699999999999999999885
No 347
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=41.83 E-value=15 Score=35.87 Aligned_cols=15 Identities=33% Similarity=0.530 Sum_probs=13.1
Q ss_pred EeeCCCCCCccceec
Q 047385 83 ITYGQTGAGKTFSME 97 (483)
Q Consensus 83 ~ayG~tgSGKT~Tm~ 97 (483)
..+|++|+|||.|+-
T Consensus 36 ~~~GpagtGKtetik 50 (231)
T PF12774_consen 36 ALSGPAGTGKTETIK 50 (231)
T ss_dssp EEESSTTSSHHHHHH
T ss_pred CCcCCCCCCchhHHH
Confidence 469999999999974
No 348
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=41.81 E-value=95 Score=30.45 Aligned_cols=22 Identities=23% Similarity=0.501 Sum_probs=8.8
Q ss_pred hHHHHHHHHHhhhhcccccccc
Q 047385 457 YASIVHKISDRLSHLVSWIWPF 478 (483)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~ 478 (483)
+.-.+....++|...+..-.||
T Consensus 103 l~p~m~~m~~~L~~~v~~d~Pf 124 (251)
T PF11932_consen 103 LVPLMEQMIDELEQFVELDLPF 124 (251)
T ss_pred HHHHHHHHHHHHHHHHhcCCCC
Confidence 3333334444444433333344
No 349
>PRK03839 putative kinase; Provisional
Probab=41.78 E-value=12 Score=34.37 Aligned_cols=14 Identities=36% Similarity=0.532 Sum_probs=12.1
Q ss_pred EEeeCCCCCCccce
Q 047385 82 VITYGQTGAGKTFS 95 (483)
Q Consensus 82 i~ayG~tgSGKT~T 95 (483)
|+-.|.+|||||+.
T Consensus 3 I~l~G~pGsGKsT~ 16 (180)
T PRK03839 3 IAITGTPGVGKTTV 16 (180)
T ss_pred EEEECCCCCCHHHH
Confidence 67789999999875
No 350
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=41.72 E-value=28 Score=34.34 Aligned_cols=20 Identities=30% Similarity=0.566 Sum_probs=18.2
Q ss_pred cCcceEEEeeCCCCCCccce
Q 047385 76 NGMNGTVITYGQTGAGKTFS 95 (483)
Q Consensus 76 ~G~n~ti~ayG~tgSGKT~T 95 (483)
.||.--|+..||+|.|||..
T Consensus 43 ~GF~FNIMVVgqSglgkstl 62 (336)
T KOG1547|consen 43 TGFDFNIMVVGQSGLGKSTL 62 (336)
T ss_pred ccCceEEEEEecCCCCchhh
Confidence 79999999999999999754
No 351
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=41.45 E-value=12 Score=33.57 Aligned_cols=16 Identities=31% Similarity=0.459 Sum_probs=13.2
Q ss_pred EEEeeCCCCCCcccee
Q 047385 81 TVITYGQTGAGKTFSM 96 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm 96 (483)
.|..+|++|||||+..
T Consensus 2 iI~i~G~~GSGKstia 17 (171)
T TIGR02173 2 IITISGPPGSGKTTVA 17 (171)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678999999998764
No 352
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=41.41 E-value=24 Score=40.22 Aligned_cols=21 Identities=19% Similarity=0.431 Sum_probs=17.7
Q ss_pred cccCchhhhHHHHHHhhhcCC
Q 047385 107 QKKGLLQRTVDELFDCMKSSD 127 (483)
Q Consensus 107 ~~~Giipr~~~~LF~~i~~~~ 127 (483)
+.-|++.|++.+|...+....
T Consensus 785 DSGGVMDRVVSQLLAELDgls 805 (953)
T KOG0736|consen 785 DSGGVMDRVVSQLLAELDGLS 805 (953)
T ss_pred CccccHHHHHHHHHHHhhccc
Confidence 567999999999999887653
No 353
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=41.37 E-value=20 Score=35.29 Aligned_cols=40 Identities=23% Similarity=0.395 Sum_probs=25.4
Q ss_pred cCCCchHHHHHHHHHHHHHHhhcCcceEEEeeCCCCCCcccee
Q 047385 54 YEKSEQAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 54 ~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm 96 (483)
.++++|....+... .+-+. .-....|+..|.||+|||.++
T Consensus 9 ~~~~~~~~~~~~~~-~~~~~--~~~~~~IllvG~tGvGKSSli 48 (249)
T cd01853 9 FPDAAQTKALELEA-KGKEE--LDFSLTILVLGKTGVGKSSTI 48 (249)
T ss_pred CcHHHHHHHHHHHH-Hhhhh--ccCCeEEEEECCCCCcHHHHH
Confidence 34566665554433 32232 345567888999999998874
No 354
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=41.28 E-value=3.2e+02 Score=25.97 Aligned_cols=37 Identities=19% Similarity=0.358 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchh
Q 047385 411 ITSLQHMVEDLVRAVEELKSENKALKTRIAAAGKIDA 447 (483)
Q Consensus 411 ~~~~~~~~~~l~~~~~~~~~e~~~l~~~~~~~~~~~~ 447 (483)
+..+...+..+...+..++-+++.|..+...++.+..
T Consensus 88 L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~Erd 124 (201)
T PF13851_consen 88 LQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERD 124 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666777777777777777777777776655
No 355
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=41.18 E-value=14 Score=37.63 Aligned_cols=15 Identities=33% Similarity=0.539 Sum_probs=13.0
Q ss_pred EEEeeCCCCCCccce
Q 047385 81 TVITYGQTGAGKTFS 95 (483)
Q Consensus 81 ti~ayG~tgSGKT~T 95 (483)
.|+-.|+||||||-.
T Consensus 6 ii~I~GpTasGKS~L 20 (300)
T PRK14729 6 IVFIFGPTAVGKSNI 20 (300)
T ss_pred EEEEECCCccCHHHH
Confidence 578899999999865
No 356
>PRK06851 hypothetical protein; Provisional
Probab=41.17 E-value=15 Score=38.48 Aligned_cols=28 Identities=29% Similarity=0.464 Sum_probs=22.5
Q ss_pred HHHHhhcCcceEEEeeCCCCCCccceec
Q 047385 70 IIRDAFNGMNGTVITYGQTGAGKTFSME 97 (483)
Q Consensus 70 lv~~~l~G~n~ti~ayG~tgSGKT~Tm~ 97 (483)
+.+.++.|.+-.++-.|.+|+|||++|-
T Consensus 21 ~~~~~~~~~~~~~il~G~pGtGKStl~~ 48 (367)
T PRK06851 21 LYDSIIDGANRIFILKGGPGTGKSTLMK 48 (367)
T ss_pred hhhhhccccceEEEEECCCCCCHHHHHH
Confidence 3455667788888999999999999873
No 357
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=41.16 E-value=4.1e+02 Score=27.17 Aligned_cols=34 Identities=29% Similarity=0.492 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 047385 411 ITSLQHMVEDLVRAVEELKSENKALKTRIAAAGK 444 (483)
Q Consensus 411 ~~~~~~~~~~l~~~~~~~~~e~~~l~~~~~~~~~ 444 (483)
+.++++.+.++...|++...+...++.+|+.++.
T Consensus 227 l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 227 LEELEEELQELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555555555555443
No 358
>PRK14527 adenylate kinase; Provisional
Probab=41.15 E-value=14 Score=34.46 Aligned_cols=17 Identities=41% Similarity=0.503 Sum_probs=14.1
Q ss_pred eEEEeeCCCCCCcccee
Q 047385 80 GTVITYGQTGAGKTFSM 96 (483)
Q Consensus 80 ~ti~ayG~tgSGKT~Tm 96 (483)
..|+.+|++|||||+..
T Consensus 7 ~~i~i~G~pGsGKsT~a 23 (191)
T PRK14527 7 KVVIFLGPPGAGKGTQA 23 (191)
T ss_pred cEEEEECCCCCCHHHHH
Confidence 46888999999998754
No 359
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=41.09 E-value=3.8e+02 Score=26.79 Aligned_cols=33 Identities=33% Similarity=0.420 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 047385 411 ITSLQHMVEDLVRAVEELKSENKALKTRIAAAG 443 (483)
Q Consensus 411 ~~~~~~~~~~l~~~~~~~~~e~~~l~~~~~~~~ 443 (483)
+..+...+++++.++++....+..++.++..+.
T Consensus 77 ~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lr 109 (312)
T PF00038_consen 77 IDNLKEELEDLRRKYEEELAERKDLEEELESLR 109 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 334455555555555555555555555555544
No 360
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=41.04 E-value=11 Score=39.19 Aligned_cols=13 Identities=38% Similarity=0.629 Sum_probs=11.6
Q ss_pred eeCCCCCCcccee
Q 047385 84 TYGQTGAGKTFSM 96 (483)
Q Consensus 84 ayG~tgSGKT~Tm 96 (483)
-.|++|||||++|
T Consensus 36 lLGPSGcGKTTlL 48 (352)
T COG3842 36 LLGPSGCGKTTLL 48 (352)
T ss_pred EECCCCCCHHHHH
Confidence 4699999999987
No 361
>PRK13531 regulatory ATPase RavA; Provisional
Probab=41.03 E-value=20 Score=38.91 Aligned_cols=28 Identities=18% Similarity=0.217 Sum_probs=19.5
Q ss_pred HHHHHHHhhcCcceEEEeeCCCCCCcccee
Q 047385 67 ALPIIRDAFNGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 67 ~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm 96 (483)
+.-++..++.|.|. +-+|++|+|||+.-
T Consensus 29 I~lll~aalag~hV--LL~GpPGTGKT~LA 56 (498)
T PRK13531 29 IRLCLLAALSGESV--FLLGPPGIAKSLIA 56 (498)
T ss_pred HHHHHHHHccCCCE--EEECCCChhHHHHH
Confidence 33444555666664 66999999998764
No 362
>PRK01172 ski2-like helicase; Provisional
Probab=41.03 E-value=18 Score=40.88 Aligned_cols=29 Identities=38% Similarity=0.321 Sum_probs=20.4
Q ss_pred CchHHHHHHHHHHHHHHhhcCcceEEEeeCCCCCCccce
Q 047385 57 SEQAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFS 95 (483)
Q Consensus 57 ~~Q~~vf~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~T 95 (483)
.-|.+++.. +.+|.| ++..++||||||..
T Consensus 25 ~~Q~~ai~~--------l~~~~n--vlv~apTGSGKTl~ 53 (674)
T PRK01172 25 DHQRMAIEQ--------LRKGEN--VIVSVPTAAGKTLI 53 (674)
T ss_pred HHHHHHHHH--------HhcCCc--EEEECCCCchHHHH
Confidence 356665543 357777 56678999999985
No 363
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=40.92 E-value=15 Score=42.11 Aligned_cols=16 Identities=38% Similarity=0.711 Sum_probs=13.6
Q ss_pred EEEeeCCCCCCcccee
Q 047385 81 TVITYGQTGAGKTFSM 96 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm 96 (483)
.|+-||++|+|||+..
T Consensus 489 giLL~GppGtGKT~la 504 (733)
T TIGR01243 489 GVLLFGPPGTGKTLLA 504 (733)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4777999999998765
No 364
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=40.92 E-value=13 Score=35.27 Aligned_cols=34 Identities=24% Similarity=0.394 Sum_probs=20.5
Q ss_pred EEeeCCCCCCccceecCCCCCCccccccCchhhhHHHHHH
Q 047385 82 VITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTVDELFD 121 (483)
Q Consensus 82 i~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~ 121 (483)
|+.+|++|||||+.--- -....|+....+.+|+.
T Consensus 2 I~i~G~pGsGKsT~a~~------La~~~g~~~is~gdllr 35 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKR------IAEKYGLPHISTGDLLR 35 (210)
T ss_pred EEEECCCCCCHHHHHHH------HHHHcCCCeeehhHHHH
Confidence 67799999999765211 01234555555555554
No 365
>PRK10867 signal recognition particle protein; Provisional
Probab=40.86 E-value=30 Score=37.11 Aligned_cols=35 Identities=6% Similarity=0.078 Sum_probs=24.2
Q ss_pred chhhhhhhcchhhHHHHHHHHHhhhhccccccccc
Q 047385 445 IDAFHKEAGENGYASIVHKISDRLSHLVSWIWPFS 479 (483)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (483)
++..+=+.|++--.+-|.+|..++..+.+....++
T Consensus 392 sR~~RIa~GsG~~~~~v~~ll~~~~~~~~~~~~~~ 426 (433)
T PRK10867 392 SRKRRIAKGSGTTVQEVNRLLKQFEQMKKMMKKMK 426 (433)
T ss_pred HHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 34445566777777888888888887776655554
No 366
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=40.86 E-value=13 Score=29.39 Aligned_cols=17 Identities=29% Similarity=0.505 Sum_probs=13.1
Q ss_pred EEeeCCCCCCccceecC
Q 047385 82 VITYGQTGAGKTFSMEG 98 (483)
Q Consensus 82 i~ayG~tgSGKT~Tm~G 98 (483)
++.+|..|+|||.+...
T Consensus 2 ~~~~g~~G~Gktt~~~~ 18 (99)
T cd01983 2 IVVTGKGGVGKTTLAAN 18 (99)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 45678889999988644
No 367
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=40.79 E-value=13 Score=37.03 Aligned_cols=14 Identities=50% Similarity=0.959 Sum_probs=12.1
Q ss_pred EEEeeCCCCCCccc
Q 047385 81 TVITYGQTGAGKTF 94 (483)
Q Consensus 81 ti~ayG~tgSGKT~ 94 (483)
.++.||++|+|||.
T Consensus 207 GvLmYGPPGTGKTl 220 (424)
T KOG0652|consen 207 GVLMYGPPGTGKTL 220 (424)
T ss_pred ceEeeCCCCCcHHH
Confidence 48899999999974
No 368
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=40.78 E-value=23 Score=35.97 Aligned_cols=48 Identities=27% Similarity=0.371 Sum_probs=30.6
Q ss_pred EEEeeCCCCCCccceecCCCCCCcc-----------ccccCchhhhHHHHHHhhhcCCC
Q 047385 81 TVITYGQTGAGKTFSMEGPSILACD-----------EQKKGLLQRTVDELFDCMKSSDA 128 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm~G~~~~~~~-----------~~~~Giipr~~~~LF~~i~~~~~ 128 (483)
-|+-||..|+|||..----....+. ..-.|==|+.+++||+......+
T Consensus 221 GVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkylGdGpklvRqlF~vA~e~ap 279 (440)
T KOG0726|consen 221 GVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAP 279 (440)
T ss_pred eeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHHhccchHHHHHHHHHHHhcCC
Confidence 4788999999998653221100000 12235668999999998877654
No 369
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=40.77 E-value=50 Score=28.81 Aligned_cols=28 Identities=32% Similarity=0.490 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 047385 416 HMVEDLVRAVEELKSENKALKTRIAAAG 443 (483)
Q Consensus 416 ~~~~~l~~~~~~~~~e~~~l~~~~~~~~ 443 (483)
..+|+|...+..|+-||..||.++..-.
T Consensus 3 ~t~EeLaaeL~kLqmENk~LKkkl~~~~ 30 (118)
T PF05812_consen 3 MTMEELAAELQKLQMENKALKKKLRQSV 30 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 4578999999999999999999998865
No 370
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=40.76 E-value=13 Score=42.66 Aligned_cols=19 Identities=37% Similarity=0.539 Sum_probs=15.6
Q ss_pred eEEEeeCCCCCCccceecC
Q 047385 80 GTVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 80 ~ti~ayG~tgSGKT~Tm~G 98 (483)
.+|.-.|++|+|||+|+.-
T Consensus 186 ~Vi~lVGpnGvGKTTTiaK 204 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAK 204 (767)
T ss_pred eEEEEECCCCCcHHHHHHH
Confidence 4677789999999999843
No 371
>PRK14530 adenylate kinase; Provisional
Probab=40.57 E-value=13 Score=35.43 Aligned_cols=16 Identities=31% Similarity=0.526 Sum_probs=13.0
Q ss_pred EEEeeCCCCCCcccee
Q 047385 81 TVITYGQTGAGKTFSM 96 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm 96 (483)
.|+..|++|||||+..
T Consensus 5 ~I~i~G~pGsGKsT~~ 20 (215)
T PRK14530 5 RILLLGAPGAGKGTQS 20 (215)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4677999999998753
No 372
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=40.13 E-value=1.3e+02 Score=25.98 Aligned_cols=41 Identities=22% Similarity=0.132 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhh
Q 047385 408 LQTITSLQHMVEDLVRAVEELKSENKALKTRIAAAGKIDAF 448 (483)
Q Consensus 408 ~~~~~~~~~~~~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~ 448 (483)
.+.+..+...+.+|+..+.++..||.+|+.+-+.|.+..+.
T Consensus 14 e~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~ 54 (110)
T PRK13169 14 EQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEE 54 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778888999999999999999999998888776553
No 373
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=40.08 E-value=22 Score=36.57 Aligned_cols=31 Identities=23% Similarity=0.264 Sum_probs=23.5
Q ss_pred HHHHHHHHhhc--Cc--ceEEEeeCCCCCCcccee
Q 047385 66 LALPIIRDAFN--GM--NGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 66 ~~~plv~~~l~--G~--n~ti~ayG~tgSGKT~Tm 96 (483)
++-+-+|.++. |+ ...+..||++|||||...
T Consensus 38 TGi~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLa 72 (325)
T cd00983 38 TGSLSLDIALGIGGYPKGRIIEIYGPESSGKTTLA 72 (325)
T ss_pred CCCHHHHHHhcCCCccCCeEEEEECCCCCCHHHHH
Confidence 35677899887 44 345778999999999664
No 374
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=40.07 E-value=14 Score=32.49 Aligned_cols=21 Identities=24% Similarity=0.452 Sum_probs=16.5
Q ss_pred cCcceEEEeeCCCCCCcccee
Q 047385 76 NGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 76 ~G~n~ti~ayG~tgSGKT~Tm 96 (483)
...+..|+-+|..||||++..
T Consensus 18 a~~~~pvli~GE~GtGK~~~A 38 (138)
T PF14532_consen 18 AKSSSPVLITGEPGTGKSLLA 38 (138)
T ss_dssp HCSSS-EEEECCTTSSHHHHH
T ss_pred hCCCCcEEEEcCCCCCHHHHH
Confidence 366777888999999998764
No 375
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=40.00 E-value=10 Score=39.91 Aligned_cols=18 Identities=33% Similarity=0.615 Sum_probs=12.9
Q ss_pred EEEeeCCCCCCccceecC
Q 047385 81 TVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm~G 98 (483)
-++..|.||||||.+|..
T Consensus 17 ~~li~G~~GsGKT~~i~~ 34 (386)
T PF10412_consen 17 HILIIGATGSGKTQAIRH 34 (386)
T ss_dssp -EEEEE-TTSSHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHH
Confidence 467799999999986643
No 376
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=39.87 E-value=79 Score=34.08 Aligned_cols=14 Identities=14% Similarity=0.456 Sum_probs=6.9
Q ss_pred hHHHHHHHHHhhhh
Q 047385 457 YASIVHKISDRLSH 470 (483)
Q Consensus 457 ~~~~~~~~~~~~~~ 470 (483)
+...+..|.+||.+
T Consensus 128 ~~~~l~~l~~~l~~ 141 (472)
T TIGR03752 128 LQGLIDQLQRRLAG 141 (472)
T ss_pred HHHHHHHHHHHHhh
Confidence 44445555555543
No 377
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=39.83 E-value=13 Score=33.38 Aligned_cols=15 Identities=27% Similarity=0.421 Sum_probs=12.1
Q ss_pred EEeeCCCCCCcccee
Q 047385 82 VITYGQTGAGKTFSM 96 (483)
Q Consensus 82 i~ayG~tgSGKT~Tm 96 (483)
|+-.|.+|||||+..
T Consensus 2 i~i~G~~GsGKSTla 16 (149)
T cd02027 2 IWLTGLSGSGKSTIA 16 (149)
T ss_pred EEEEcCCCCCHHHHH
Confidence 567899999997653
No 378
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=39.52 E-value=2.5e+02 Score=32.30 Aligned_cols=37 Identities=19% Similarity=0.382 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 047385 408 LQTITSLQHMVEDLVRAVEELKSENKALKTRIAAAGK 444 (483)
Q Consensus 408 ~~~~~~~~~~~~~l~~~~~~~~~e~~~l~~~~~~~~~ 444 (483)
--.+.+|++.+.+++.++..+--|...|..++.+.+.
T Consensus 485 isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~ 521 (1118)
T KOG1029|consen 485 ISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQS 521 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhh
Confidence 3456788889999999998888888888777776654
No 379
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=39.51 E-value=27 Score=40.20 Aligned_cols=18 Identities=39% Similarity=0.497 Sum_probs=15.5
Q ss_pred ceEEEeeCCCCCCcccee
Q 047385 79 NGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 79 n~ti~ayG~tgSGKT~Tm 96 (483)
.++++-+|+||+|||++.
T Consensus 488 ~~~~Lf~GP~GvGKT~lA 505 (758)
T PRK11034 488 VGSFLFAGPTGVGKTEVT 505 (758)
T ss_pred cceEEEECCCCCCHHHHH
Confidence 357889999999999885
No 380
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=39.25 E-value=1.2e+02 Score=21.80 Aligned_cols=31 Identities=23% Similarity=0.365 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 047385 413 SLQHMVEDLVRAVEELKSENKALKTRIAAAG 443 (483)
Q Consensus 413 ~~~~~~~~l~~~~~~~~~e~~~l~~~~~~~~ 443 (483)
.|....+.|......++.||+.|+.++..+.
T Consensus 9 ~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~ 39 (45)
T PF02183_consen 9 ALKASYDSLKAEYDSLKKENEKLRAEVQELK 39 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566667777777777777777766654
No 381
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=39.15 E-value=24 Score=35.87 Aligned_cols=30 Identities=23% Similarity=0.320 Sum_probs=22.1
Q ss_pred HHHHHHhhcCc---ceEEEeeCCCCCCccceec
Q 047385 68 LPIIRDAFNGM---NGTVITYGQTGAGKTFSME 97 (483)
Q Consensus 68 ~plv~~~l~G~---n~ti~ayG~tgSGKT~Tm~ 97 (483)
.+-+|.++.|- ...+.-||++|||||....
T Consensus 88 ~~~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~ 120 (317)
T PRK04301 88 SKELDELLGGGIETQSITEFYGEFGSGKTQICH 120 (317)
T ss_pred CHHHHHHhcCCccCCcEEEEECCCCCCHhHHHH
Confidence 35567777652 4567789999999998754
No 382
>PRK13767 ATP-dependent helicase; Provisional
Probab=39.14 E-value=18 Score=42.30 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=16.8
Q ss_pred HhhcCcceEEEeeCCCCCCcccee
Q 047385 73 DAFNGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 73 ~~l~G~n~ti~ayG~tgSGKT~Tm 96 (483)
.+++|.|+.| ..+||||||.+.
T Consensus 43 ~il~g~nvli--~APTGSGKTlaa 64 (876)
T PRK13767 43 LIHEGKNVLI--SSPTGSGKTLAA 64 (876)
T ss_pred HHHcCCCEEE--ECCCCCcHHHHH
Confidence 3468988655 669999999874
No 383
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=39.06 E-value=21 Score=39.93 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=16.9
Q ss_pred HHHhhcCcceEEEeeCCCCCCccce
Q 047385 71 IRDAFNGMNGTVITYGQTGAGKTFS 95 (483)
Q Consensus 71 v~~~l~G~n~ti~ayG~tgSGKT~T 95 (483)
+..++.|.++. +.++||||||.+
T Consensus 34 i~~il~g~dvl--v~apTGsGKTl~ 56 (607)
T PRK11057 34 IDAVLSGRDCL--VVMPTGGGKSLC 56 (607)
T ss_pred HHHHHcCCCEE--EEcCCCchHHHH
Confidence 34456888864 457999999975
No 384
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=39.02 E-value=13 Score=37.46 Aligned_cols=19 Identities=26% Similarity=0.382 Sum_probs=14.6
Q ss_pred cceEEEeeCCCCCCcccee
Q 047385 78 MNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 78 ~n~ti~ayG~tgSGKT~Tm 96 (483)
.-..++.||..|+|||..+
T Consensus 75 ~~~~~~l~G~g~nGKStl~ 93 (304)
T TIGR01613 75 EQKLFFLYGNGGNGKSTFQ 93 (304)
T ss_pred ceEEEEEECCCCCcHHHHH
Confidence 3456889999999997654
No 385
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=39.01 E-value=12 Score=38.60 Aligned_cols=15 Identities=33% Similarity=0.667 Sum_probs=12.7
Q ss_pred EEeeCCCCCCcccee
Q 047385 82 VITYGQTGAGKTFSM 96 (483)
Q Consensus 82 i~ayG~tgSGKT~Tm 96 (483)
+.-.|++|+|||++|
T Consensus 32 ~vllGPSGcGKSTlL 46 (338)
T COG3839 32 VVLLGPSGCGKSTLL 46 (338)
T ss_pred EEEECCCCCCHHHHH
Confidence 445799999999987
No 386
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=39.00 E-value=13 Score=35.14 Aligned_cols=16 Identities=31% Similarity=0.347 Sum_probs=12.7
Q ss_pred EEEeeCCCCCCcccee
Q 047385 81 TVITYGQTGAGKTFSM 96 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm 96 (483)
.|.-.|++|||||+.+
T Consensus 8 vi~I~G~sGsGKSTl~ 23 (207)
T TIGR00235 8 IIGIGGGSGSGKTTVA 23 (207)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4567899999999654
No 387
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=38.96 E-value=22 Score=33.96 Aligned_cols=28 Identities=21% Similarity=0.380 Sum_probs=20.2
Q ss_pred HHHHhhc-Cc--ceEEEeeCCCCCCccceec
Q 047385 70 IIRDAFN-GM--NGTVITYGQTGAGKTFSME 97 (483)
Q Consensus 70 lv~~~l~-G~--n~ti~ayG~tgSGKT~Tm~ 97 (483)
-+|.++. |+ ...++-+|.+|+|||....
T Consensus 4 ~LD~~l~gGi~~g~~~li~G~~G~GKt~~~~ 34 (224)
T TIGR03880 4 GLDEMLGGGFPEGHVIVVIGEYGTGKTTFSL 34 (224)
T ss_pred hhHHHhcCCCCCCeEEEEECCCCCCHHHHHH
Confidence 4577775 43 5567779999999987643
No 388
>smart00338 BRLZ basic region leucin zipper.
Probab=38.95 E-value=51 Score=25.14 Aligned_cols=31 Identities=35% Similarity=0.500 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 047385 415 QHMVEDLVRAVEELKSENKALKTRIAAAGKI 445 (483)
Q Consensus 415 ~~~~~~l~~~~~~~~~e~~~l~~~~~~~~~~ 445 (483)
.+.+.+|...++.++.+|..|+.++..+..+
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~~~l~~e 55 (65)
T smart00338 25 KAEIEELERKVEQLEAENERLKKEIERLRRE 55 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 389
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=38.89 E-value=29 Score=30.45 Aligned_cols=19 Identities=37% Similarity=0.595 Sum_probs=16.1
Q ss_pred eEEEeeCCCCCCccceecC
Q 047385 80 GTVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 80 ~ti~ayG~tgSGKT~Tm~G 98 (483)
..|+-+|.-|||||+-.-|
T Consensus 16 ~vi~L~GdLGaGKTtf~r~ 34 (123)
T PF02367_consen 16 DVILLSGDLGAGKTTFVRG 34 (123)
T ss_dssp EEEEEEESTTSSHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 5688899999999998755
No 390
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=38.82 E-value=14 Score=28.43 Aligned_cols=15 Identities=27% Similarity=0.490 Sum_probs=11.5
Q ss_pred EEeeCCCCCCcccee
Q 047385 82 VITYGQTGAGKTFSM 96 (483)
Q Consensus 82 i~ayG~tgSGKT~Tm 96 (483)
|.-.|+.|||||...
T Consensus 2 i~i~G~~gsGKst~~ 16 (69)
T cd02019 2 IAITGGSGSGKSTVA 16 (69)
T ss_pred EEEECCCCCCHHHHH
Confidence 445699999997664
No 391
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=38.70 E-value=32 Score=41.07 Aligned_cols=17 Identities=47% Similarity=0.604 Sum_probs=13.0
Q ss_pred eEEEeeCCCCCCcccee
Q 047385 80 GTVITYGQTGAGKTFSM 96 (483)
Q Consensus 80 ~ti~ayG~tgSGKT~Tm 96 (483)
+.+.-+|+||||||..+
T Consensus 31 ~l~~I~G~tGaGKStil 47 (1047)
T PRK10246 31 GLFAITGPTGAGKTTLL 47 (1047)
T ss_pred CEEEEECCCCCCHHHHH
Confidence 44556899999998743
No 392
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=38.69 E-value=1.1e+02 Score=27.43 Aligned_cols=21 Identities=10% Similarity=0.189 Sum_probs=17.2
Q ss_pred hhHHHHHHHHHhhhhcccccc
Q 047385 456 GYASIVHKISDRLSHLVSWIW 476 (483)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~ 476 (483)
.-...+.+|.++.+.++.|-.
T Consensus 79 ~re~~i~rL~~ENe~lR~Wa~ 99 (135)
T TIGR03495 79 QREQRIERLKRENEDLRRWAD 99 (135)
T ss_pred HHHHHHHHHHHcCHHHHHHhc
Confidence 366788899999999999854
No 393
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=38.68 E-value=1.7e+02 Score=23.16 Aligned_cols=25 Identities=24% Similarity=0.445 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 047385 417 MVEDLVRAVEELKSENKALKTRIAA 441 (483)
Q Consensus 417 ~~~~l~~~~~~~~~e~~~l~~~~~~ 441 (483)
.+..|+.++.+++.+...|+.+++.
T Consensus 34 ~IKKLr~~~~e~e~~~~~l~~~~~~ 58 (74)
T PF12329_consen 34 TIKKLRAKIKELEKQIKELKKKLEE 58 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444333
No 394
>PRK04296 thymidine kinase; Provisional
Probab=38.55 E-value=10 Score=35.49 Aligned_cols=18 Identities=22% Similarity=0.383 Sum_probs=15.1
Q ss_pred EEEeeCCCCCCccceecC
Q 047385 81 TVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm~G 98 (483)
.++-+|+.|+|||..+.+
T Consensus 4 i~litG~~GsGKTT~~l~ 21 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQ 21 (190)
T ss_pred EEEEECCCCCHHHHHHHH
Confidence 467799999999988765
No 395
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=38.47 E-value=3.2e+02 Score=25.20 Aligned_cols=9 Identities=0% Similarity=0.246 Sum_probs=3.5
Q ss_pred hHHHHHHHH
Q 047385 457 YASIVHKIS 465 (483)
Q Consensus 457 ~~~~~~~~~ 465 (483)
+.++++...
T Consensus 177 l~~~~~~~~ 185 (191)
T PF04156_consen 177 LEEKIQELQ 185 (191)
T ss_pred HHHHHHHHH
Confidence 333444333
No 396
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=38.41 E-value=68 Score=24.36 Aligned_cols=29 Identities=41% Similarity=0.579 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 047385 416 HMVEDLVRAVEELKSENKALKTRIAAAGK 444 (483)
Q Consensus 416 ~~~~~l~~~~~~~~~e~~~l~~~~~~~~~ 444 (483)
+.+++|...+..++.+|..|+.++..+..
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~L~~ 54 (64)
T PF00170_consen 26 QYIEELEEKVEELESENEELKKELEQLKK 54 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555554443
No 397
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=38.30 E-value=19 Score=40.41 Aligned_cols=18 Identities=22% Similarity=0.488 Sum_probs=15.1
Q ss_pred EEEeeCCCCCCccceecC
Q 047385 81 TVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm~G 98 (483)
.++-||++|+|||.++.-
T Consensus 112 illL~GP~GsGKTTl~~~ 129 (637)
T TIGR00602 112 ILLITGPSGCGKSTTIKI 129 (637)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 477899999999998743
No 398
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=38.29 E-value=16 Score=34.18 Aligned_cols=14 Identities=36% Similarity=0.662 Sum_probs=11.0
Q ss_pred EEeeCCCCCCccce
Q 047385 82 VITYGQTGAGKTFS 95 (483)
Q Consensus 82 i~ayG~tgSGKT~T 95 (483)
|+-.|++|||||+-
T Consensus 3 iiilG~pGaGK~T~ 16 (178)
T COG0563 3 ILILGPPGAGKSTL 16 (178)
T ss_pred EEEECCCCCCHHHH
Confidence 56789999999654
No 399
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=38.14 E-value=18 Score=39.11 Aligned_cols=50 Identities=26% Similarity=0.348 Sum_probs=27.9
Q ss_pred EeecEEecCCCchHHHHHHHHHHHHHHh-h----cCcceEEEeeCCCCCCcccee
Q 047385 47 FGFDRVFYEKSEQAEVFEFLALPIIRDA-F----NGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 47 F~FD~Vf~~~~~Q~~vf~~~~~plv~~~-l----~G~n~ti~ayG~tgSGKT~Tm 96 (483)
.+|+.+-+-+...+.+.+.+..|+...- + .+....|+-||++|+|||++-
T Consensus 239 v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lA 293 (494)
T COG0464 239 VTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLA 293 (494)
T ss_pred cceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHH
Confidence 3444444433333444444444443211 1 244457999999999999873
No 400
>PRK00279 adk adenylate kinase; Reviewed
Probab=38.03 E-value=15 Score=34.90 Aligned_cols=14 Identities=43% Similarity=0.636 Sum_probs=12.4
Q ss_pred EEeeCCCCCCccce
Q 047385 82 VITYGQTGAGKTFS 95 (483)
Q Consensus 82 i~ayG~tgSGKT~T 95 (483)
|+.+|++|||||..
T Consensus 3 I~v~G~pGsGKsT~ 16 (215)
T PRK00279 3 LILLGPPGAGKGTQ 16 (215)
T ss_pred EEEECCCCCCHHHH
Confidence 78899999999865
No 401
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=37.98 E-value=2.1e+02 Score=30.45 Aligned_cols=27 Identities=30% Similarity=0.303 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047385 416 HMVEDLVRAVEELKSENKALKTRIAAA 442 (483)
Q Consensus 416 ~~~~~l~~~~~~~~~e~~~l~~~~~~~ 442 (483)
-+.++++.+++++..||.+||..+..+
T Consensus 297 le~Enlqmr~qqleeentelRs~~arl 323 (502)
T KOG0982|consen 297 LEKENLQMRDQQLEEENTELRSLIARL 323 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888888888877664
No 402
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=37.91 E-value=31 Score=36.89 Aligned_cols=28 Identities=7% Similarity=0.071 Sum_probs=19.8
Q ss_pred chhhhhhhcchhhHHHHHHHHHhhhhcc
Q 047385 445 IDAFHKEAGENGYASIVHKISDRLSHLV 472 (483)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (483)
++..+=+.|++--.+-|.+|..++..+.
T Consensus 400 sR~~RIa~GSG~~~~~V~~ll~~~~~~~ 427 (429)
T TIGR01425 400 SRIQRVARGSGRSIRDVQELLEQYKKFA 427 (429)
T ss_pred cHHHHHHccCCCCHHHHHHHHHHHHHHh
Confidence 4445556677777788888888887664
No 403
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=37.85 E-value=20 Score=32.91 Aligned_cols=27 Identities=19% Similarity=0.315 Sum_probs=21.2
Q ss_pred HHHHhhc-CcceEEEeeCCCCCCcccee
Q 047385 70 IIRDAFN-GMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 70 lv~~~l~-G~n~ti~ayG~tgSGKT~Tm 96 (483)
++..+.. .....|+..|..|||||..+
T Consensus 4 ~~~~~~~~~~~~~ililGl~~sGKTtll 31 (175)
T PF00025_consen 4 VLSKLKSKKKEIKILILGLDGSGKTTLL 31 (175)
T ss_dssp HHHHCTTTTSEEEEEEEESTTSSHHHHH
T ss_pred HHHHhcccCcEEEEEEECCCccchHHHH
Confidence 4555554 77788999999999999765
No 404
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=37.77 E-value=28 Score=36.04 Aligned_cols=21 Identities=29% Similarity=0.422 Sum_probs=16.4
Q ss_pred cCc-ceEEEeeCCCCCCcccee
Q 047385 76 NGM-NGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 76 ~G~-n~ti~ayG~tgSGKT~Tm 96 (483)
.|. ...++-||+.|+|||++.
T Consensus 35 ~~~~~~~~L~~G~~G~GKt~~a 56 (367)
T PRK14970 35 NNHLAQALLFCGPRGVGKTTCA 56 (367)
T ss_pred cCCCCeEEEEECCCCCCHHHHH
Confidence 453 446778999999999775
No 405
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=37.64 E-value=14 Score=34.99 Aligned_cols=17 Identities=47% Similarity=0.647 Sum_probs=14.6
Q ss_pred EEEeeCCCCCCccceec
Q 047385 81 TVITYGQTGAGKTFSME 97 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm~ 97 (483)
+++-+|++|||||..+.
T Consensus 24 ~~~i~G~NGsGKTTLl~ 40 (204)
T cd03240 24 LTLIVGQNGAGKTTIIE 40 (204)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 67789999999998873
No 406
>TIGR02767 TraG-Ti Ti-type conjugative transfer system protien TraG. This protein is found in the Agrobacterium tumefaciens Ti plasmid tra region responsible for conjugative transfer of the entire plasmid among Agrobacterium strains. The protein is distantly related to the F-type conjugation system TraG protein. Both of these systems are examples of type IV secretion systems.
Probab=37.54 E-value=17 Score=40.79 Aligned_cols=18 Identities=28% Similarity=0.287 Sum_probs=15.2
Q ss_pred eEEEeeCCCCCCccceec
Q 047385 80 GTVITYGQTGAGKTFSME 97 (483)
Q Consensus 80 ~ti~ayG~tgSGKT~Tm~ 97 (483)
.-++++|+||||||.++.
T Consensus 212 ~H~lv~ApTgsGKgvg~V 229 (623)
T TIGR02767 212 THMIFFAGSGGFKTTSVV 229 (623)
T ss_pred ceEEEEeCCCCCccceee
Confidence 458899999999999763
No 407
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=37.43 E-value=13 Score=35.87 Aligned_cols=13 Identities=23% Similarity=0.373 Sum_probs=11.1
Q ss_pred eeCCCCCCcccee
Q 047385 84 TYGQTGAGKTFSM 96 (483)
Q Consensus 84 ayG~tgSGKT~Tm 96 (483)
--|++|||||+++
T Consensus 4 I~G~sGSGKTTla 16 (220)
T cd02025 4 IAGSVAVGKSTTA 16 (220)
T ss_pred eeCCCCCCHHHHH
Confidence 3499999999986
No 408
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=37.40 E-value=45 Score=39.31 Aligned_cols=14 Identities=36% Similarity=0.499 Sum_probs=11.7
Q ss_pred eCCCCCCccceecC
Q 047385 85 YGQTGAGKTFSMEG 98 (483)
Q Consensus 85 yG~tgSGKT~Tm~G 98 (483)
-=+||||||||+.+
T Consensus 65 ~M~TGtGKT~~~~~ 78 (986)
T PRK15483 65 KMETGTGKTYVYTR 78 (986)
T ss_pred EeCCCCCHHHHHHH
Confidence 34799999998877
No 409
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=37.36 E-value=19 Score=39.96 Aligned_cols=25 Identities=28% Similarity=0.496 Sum_probs=18.4
Q ss_pred HHHHhhcCcceEEEeeCCCCCCcccee
Q 047385 70 IIRDAFNGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 70 lv~~~l~G~n~ti~ayG~tgSGKT~Tm 96 (483)
++..+++|.|+ ++..+||+|||.+.
T Consensus 21 ~i~~il~g~dv--lv~~PTG~GKTl~y 45 (591)
T TIGR01389 21 IISHVLDGRDV--LVVMPTGGGKSLCY 45 (591)
T ss_pred HHHHHHcCCCE--EEEcCCCccHhHHH
Confidence 34455688875 55679999999874
No 410
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=37.31 E-value=15 Score=35.14 Aligned_cols=15 Identities=27% Similarity=0.463 Sum_probs=12.6
Q ss_pred EEeeCCCCCCcccee
Q 047385 82 VITYGQTGAGKTFSM 96 (483)
Q Consensus 82 i~ayG~tgSGKT~Tm 96 (483)
+.-.|+.|||||.+|
T Consensus 28 ~~ivGpNGaGKSTll 42 (212)
T cd03274 28 SAIVGPNGSGKSNVI 42 (212)
T ss_pred EEEECCCCCCHHHHH
Confidence 345799999999987
No 411
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=37.26 E-value=29 Score=35.42 Aligned_cols=19 Identities=26% Similarity=0.342 Sum_probs=15.5
Q ss_pred cceEEEeeCCCCCCcccee
Q 047385 78 MNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 78 ~n~ti~ayG~tgSGKT~Tm 96 (483)
....++-||+.|+|||.+.
T Consensus 35 ~~~~~Ll~G~~G~GKt~~a 53 (355)
T TIGR02397 35 IAHAYLFSGPRGTGKTSIA 53 (355)
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3456788999999999775
No 412
>PRK09354 recA recombinase A; Provisional
Probab=37.23 E-value=22 Score=36.90 Aligned_cols=32 Identities=25% Similarity=0.271 Sum_probs=24.0
Q ss_pred HHHHHHHHhhc-C-c--ceEEEeeCCCCCCccceec
Q 047385 66 LALPIIRDAFN-G-M--NGTVITYGQTGAGKTFSME 97 (483)
Q Consensus 66 ~~~plv~~~l~-G-~--n~ti~ayG~tgSGKT~Tm~ 97 (483)
++-|-+|.+|. | + ...+.-||++|||||....
T Consensus 43 TGi~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal 78 (349)
T PRK09354 43 TGSLALDIALGIGGLPRGRIVEIYGPESSGKTTLAL 78 (349)
T ss_pred CCcHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHH
Confidence 35677888887 4 3 3467789999999998753
No 413
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=37.23 E-value=15 Score=39.04 Aligned_cols=17 Identities=35% Similarity=0.645 Sum_probs=14.8
Q ss_pred eEEEeeCCCCCCcccee
Q 047385 80 GTVITYGQTGAGKTFSM 96 (483)
Q Consensus 80 ~ti~ayG~tgSGKT~Tm 96 (483)
..|+-+|+||+|||+..
T Consensus 117 ~~iLL~GP~GsGKT~lA 133 (413)
T TIGR00382 117 SNILLIGPTGSGKTLLA 133 (413)
T ss_pred ceEEEECCCCcCHHHHH
Confidence 56889999999999875
No 414
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=37.19 E-value=20 Score=41.32 Aligned_cols=16 Identities=31% Similarity=0.310 Sum_probs=13.6
Q ss_pred EEEeeCCCCCCcccee
Q 047385 81 TVITYGQTGAGKTFSM 96 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm 96 (483)
.++-||++|+|||+..
T Consensus 349 ~lll~GppG~GKT~lA 364 (775)
T TIGR00763 349 ILCLVGPPGVGKTSLG 364 (775)
T ss_pred eEEEECCCCCCHHHHH
Confidence 5777999999999765
No 415
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=37.12 E-value=13 Score=31.37 Aligned_cols=15 Identities=27% Similarity=0.434 Sum_probs=12.1
Q ss_pred EEeeCCCCCCcccee
Q 047385 82 VITYGQTGAGKTFSM 96 (483)
Q Consensus 82 i~ayG~tgSGKT~Tm 96 (483)
|.-.|.+|+|||..+
T Consensus 2 V~iiG~~~~GKSTli 16 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLI 16 (116)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 456899999998764
No 416
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=37.11 E-value=23 Score=41.04 Aligned_cols=29 Identities=21% Similarity=0.207 Sum_probs=20.0
Q ss_pred HHHHHHHhhcCcceEEEeeCCCCCCccceec
Q 047385 67 ALPIIRDAFNGMNGTVITYGQTGAGKTFSME 97 (483)
Q Consensus 67 ~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm~ 97 (483)
...+++.+-++. .|+..|+||||||..+.
T Consensus 10 ~~~i~~~l~~~~--~vvv~A~TGSGKTt~~p 38 (812)
T PRK11664 10 LPELLTALKTAP--QVLLKAPTGAGKSTWLP 38 (812)
T ss_pred HHHHHHHHHhCC--CEEEEcCCCCCHHHHHH
Confidence 345555554444 46779999999998863
No 417
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=36.98 E-value=25 Score=38.02 Aligned_cols=17 Identities=35% Similarity=0.384 Sum_probs=14.5
Q ss_pred eEEEeeCCCCCCcccee
Q 047385 80 GTVITYGQTGAGKTFSM 96 (483)
Q Consensus 80 ~ti~ayG~tgSGKT~Tm 96 (483)
..++-||++|+|||++.
T Consensus 37 ~~~Lf~GPpGtGKTTlA 53 (472)
T PRK14962 37 HAYIFAGPRGTGKTTVA 53 (472)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45788999999999876
No 418
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=36.92 E-value=16 Score=37.58 Aligned_cols=18 Identities=28% Similarity=0.527 Sum_probs=14.5
Q ss_pred ceEEEeeCCCCCCcccee
Q 047385 79 NGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 79 n~ti~ayG~tgSGKT~Tm 96 (483)
+.-|+-.|++|+|||...
T Consensus 64 ~~~ilL~G~pGtGKTtla 81 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHI 81 (327)
T ss_pred CCcEEEEeCCCChHHHHH
Confidence 345788999999998764
No 419
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=36.83 E-value=17 Score=38.76 Aligned_cols=16 Identities=44% Similarity=0.698 Sum_probs=13.2
Q ss_pred EEEeeCCCCCCcccee
Q 047385 81 TVITYGQTGAGKTFSM 96 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm 96 (483)
-|+..|+||||||+.-
T Consensus 228 NvLllGPtGsGKTlla 243 (564)
T KOG0745|consen 228 NVLLLGPTGSGKTLLA 243 (564)
T ss_pred cEEEECCCCCchhHHH
Confidence 4678999999999753
No 420
>PTZ00014 myosin-A; Provisional
Probab=36.81 E-value=33 Score=39.83 Aligned_cols=21 Identities=38% Similarity=0.487 Sum_probs=19.0
Q ss_pred cCcceEEEeeCCCCCCcccee
Q 047385 76 NGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 76 ~G~n~ti~ayG~tgSGKT~Tm 96 (483)
.+.|-||+.-|.+|||||.+.
T Consensus 180 ~~~~QsIiiSGESGAGKTe~t 200 (821)
T PTZ00014 180 VKKSQTIIVSGESGAGKTEAT 200 (821)
T ss_pred cCCCceEEEEcCCCCCchHHH
Confidence 699999999999999999654
No 421
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=36.78 E-value=79 Score=34.12 Aligned_cols=29 Identities=31% Similarity=0.383 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047385 414 LQHMVEDLVRAVEELKSENKALKTRIAAA 442 (483)
Q Consensus 414 ~~~~~~~l~~~~~~~~~e~~~l~~~~~~~ 442 (483)
+....++++.+|++++.|+.+|+.+++++
T Consensus 95 ~saq~~dle~KIkeLEaE~~~Lk~Ql~a~ 123 (475)
T PRK13729 95 LNKQRGDDQRRIEKLGQDNAALAEQVKAL 123 (475)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 34566778889999999999999998653
No 422
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=36.77 E-value=17 Score=38.73 Aligned_cols=17 Identities=35% Similarity=0.645 Sum_probs=14.5
Q ss_pred eEEEeeCCCCCCcccee
Q 047385 80 GTVITYGQTGAGKTFSM 96 (483)
Q Consensus 80 ~ti~ayG~tgSGKT~Tm 96 (483)
..|+-+|++|+|||+..
T Consensus 109 ~~iLl~Gp~GtGKT~lA 125 (412)
T PRK05342 109 SNILLIGPTGSGKTLLA 125 (412)
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 56889999999998764
No 423
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=36.75 E-value=17 Score=34.70 Aligned_cols=27 Identities=30% Similarity=0.512 Sum_probs=19.9
Q ss_pred HHHHHhhcC---cceEEEeeCCCCCCccce
Q 047385 69 PIIRDAFNG---MNGTVITYGQTGAGKTFS 95 (483)
Q Consensus 69 plv~~~l~G---~n~ti~ayG~tgSGKT~T 95 (483)
|-+|.++.| .+.+++.+|++|||||..
T Consensus 6 ~~LD~~l~GGip~gs~~li~G~~GsGKT~l 35 (226)
T PF06745_consen 6 PGLDELLGGGIPKGSVVLISGPPGSGKTTL 35 (226)
T ss_dssp TTHHHHTTTSEETTSEEEEEESTTSSHHHH
T ss_pred hhHHHhhcCCCCCCcEEEEEeCCCCCcHHH
Confidence 345677743 356788999999999865
No 424
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=36.69 E-value=39 Score=33.28 Aligned_cols=28 Identities=18% Similarity=0.469 Sum_probs=22.1
Q ss_pred EEeeCCCCCCccceecCCCCCCccccccCchhhhHHHHHHhhhcC
Q 047385 82 VITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTVDELFDCMKSS 126 (483)
Q Consensus 82 i~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~i~~~ 126 (483)
....|++|||||+=..| +.++|..+...
T Consensus 5 qvVIGPPgSGKsTYc~g-----------------~~~fls~~gr~ 32 (290)
T KOG1533|consen 5 QVVIGPPGSGKSTYCNG-----------------MSQFLSAIGRP 32 (290)
T ss_pred eEEEcCCCCCccchhhh-----------------HHHHHHHhCCc
Confidence 35679999999988888 56788877654
No 425
>PRK05480 uridine/cytidine kinase; Provisional
Probab=36.61 E-value=17 Score=34.23 Aligned_cols=17 Identities=29% Similarity=0.274 Sum_probs=13.6
Q ss_pred eEEEeeCCCCCCcccee
Q 047385 80 GTVITYGQTGAGKTFSM 96 (483)
Q Consensus 80 ~ti~ayG~tgSGKT~Tm 96 (483)
-.|.-.|.+|||||+..
T Consensus 7 ~iI~I~G~sGsGKTTl~ 23 (209)
T PRK05480 7 IIIGIAGGSGSGKTTVA 23 (209)
T ss_pred EEEEEECCCCCCHHHHH
Confidence 35667899999999765
No 426
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=36.56 E-value=19 Score=37.86 Aligned_cols=33 Identities=36% Similarity=0.633 Sum_probs=23.9
Q ss_pred HHHHHHHHHH-HHhhcCcce---EEEeeCCCCCCccc
Q 047385 62 VFEFLALPII-RDAFNGMNG---TVITYGQTGAGKTF 94 (483)
Q Consensus 62 vf~~~~~plv-~~~l~G~n~---ti~ayG~tgSGKT~ 94 (483)
+-+.++.|+. ..+|+|.-. .|+.+|+.|+|||-
T Consensus 224 L~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTl 260 (491)
T KOG0738|consen 224 LKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTL 260 (491)
T ss_pred HHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHH
Confidence 4445556653 677888765 48889999999963
No 427
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=36.55 E-value=16 Score=35.43 Aligned_cols=15 Identities=40% Similarity=0.519 Sum_probs=11.5
Q ss_pred EEeeCCCCCCcccee
Q 047385 82 VITYGQTGAGKTFSM 96 (483)
Q Consensus 82 i~ayG~tgSGKT~Tm 96 (483)
++-+|+||+|||..-
T Consensus 4 ~~i~GpT~tGKt~~a 18 (233)
T PF01745_consen 4 YLIVGPTGTGKTALA 18 (233)
T ss_dssp EEEE-STTSSHHHHH
T ss_pred EEEECCCCCChhHHH
Confidence 566899999999874
No 428
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=36.55 E-value=1e+02 Score=23.27 Aligned_cols=37 Identities=30% Similarity=0.372 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Q 047385 410 TITSLQHMVEDLVRAVEELKSENKALKTRIAAAGKID 446 (483)
Q Consensus 410 ~~~~~~~~~~~l~~~~~~~~~e~~~l~~~~~~~~~~~ 446 (483)
++.+|...+..|..++.++..+...|+..+...+.+.
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EA 40 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEA 40 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666777777777777777777777666553
No 429
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=36.53 E-value=20 Score=41.06 Aligned_cols=28 Identities=18% Similarity=0.432 Sum_probs=20.1
Q ss_pred HHHHhhcCcceEEEeeCCCCCCccceecC
Q 047385 70 IIRDAFNGMNGTVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 70 lv~~~l~G~n~ti~ayG~tgSGKT~Tm~G 98 (483)
.|..++.+ +..++..|..|+||||+|-+
T Consensus 360 Av~~i~~s-~~~~il~G~aGTGKTtll~~ 387 (744)
T TIGR02768 360 AVRHVTGS-GDIAVVVGRAGTGKSTMLKA 387 (744)
T ss_pred HHHHHhcC-CCEEEEEecCCCCHHHHHHH
Confidence 34455554 34567789999999999855
No 430
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=36.24 E-value=23 Score=38.78 Aligned_cols=46 Identities=20% Similarity=0.322 Sum_probs=30.5
Q ss_pred eeEeecEEecCCCchHHHHHHHHHHHHHHhhcCcceEEEeeCCCCCCcccee
Q 047385 45 FKFGFDRVFYEKSEQAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 45 ~~F~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm 96 (483)
..+.||.+++.+..=..+.+.+ .. +...+..|+-+|.+||||++.-
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~-----~~-~A~~~~pvlI~GE~GtGK~~lA 244 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQA-----RK-LAMLDAPLLITGDTGTGKDLLA 244 (520)
T ss_pred ccccccceeECCHHHHHHHHHH-----HH-HhCCCCCEEEECCCCccHHHHH
Confidence 4578999888655433344332 22 2335777999999999997653
No 431
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=36.12 E-value=15 Score=35.86 Aligned_cols=16 Identities=31% Similarity=0.592 Sum_probs=13.7
Q ss_pred EEEeeCCCCCCcccee
Q 047385 81 TVITYGQTGAGKTFSM 96 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm 96 (483)
.+..+|++|||||..+
T Consensus 32 ~~~i~G~nGsGKSTL~ 47 (235)
T COG1122 32 RVLLIGPNGSGKSTLL 47 (235)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5677999999999875
No 432
>PTZ00110 helicase; Provisional
Probab=36.12 E-value=20 Score=39.46 Aligned_cols=24 Identities=33% Similarity=0.473 Sum_probs=18.5
Q ss_pred HHHhhcCcceEEEeeCCCCCCcccee
Q 047385 71 IRDAFNGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 71 v~~~l~G~n~ti~ayG~tgSGKT~Tm 96 (483)
+..++.|.+. ++.++||||||.+.
T Consensus 161 ip~~l~G~dv--I~~ApTGSGKTlay 184 (545)
T PTZ00110 161 WPIALSGRDM--IGIAETGSGKTLAF 184 (545)
T ss_pred HHHHhcCCCE--EEEeCCCChHHHHH
Confidence 4556789876 55679999999864
No 433
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).
Probab=36.03 E-value=15 Score=42.13 Aligned_cols=19 Identities=37% Similarity=0.683 Sum_probs=16.3
Q ss_pred ceEEEeeCCCCCCccceec
Q 047385 79 NGTVITYGQTGAGKTFSME 97 (483)
Q Consensus 79 n~ti~ayG~tgSGKT~Tm~ 97 (483)
|.-.+..|+||||||+++-
T Consensus 434 ~~n~~I~G~tGsGKS~~~~ 452 (785)
T TIGR00929 434 LGHTLIFGPTGSGKTTLLN 452 (785)
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 6667889999999999983
No 434
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=35.98 E-value=16 Score=34.67 Aligned_cols=19 Identities=37% Similarity=0.672 Sum_probs=14.6
Q ss_pred eEEEeeCCCCCCccceecC
Q 047385 80 GTVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 80 ~ti~ayG~tgSGKT~Tm~G 98 (483)
..+.-.|++|||||..|-.
T Consensus 29 ~~~~i~G~NGsGKSTll~~ 47 (213)
T cd03279 29 GLFLICGPTGAGKSTILDA 47 (213)
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 3455689999999988743
No 435
>PLN02200 adenylate kinase family protein
Probab=35.95 E-value=17 Score=35.39 Aligned_cols=16 Identities=25% Similarity=0.320 Sum_probs=13.7
Q ss_pred eEEEeeCCCCCCccce
Q 047385 80 GTVITYGQTGAGKTFS 95 (483)
Q Consensus 80 ~ti~ayG~tgSGKT~T 95 (483)
..|+..|++|||||+.
T Consensus 44 ~ii~I~G~PGSGKsT~ 59 (234)
T PLN02200 44 FITFVLGGPGSGKGTQ 59 (234)
T ss_pred EEEEEECCCCCCHHHH
Confidence 4678899999999876
No 436
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=35.73 E-value=17 Score=33.29 Aligned_cols=16 Identities=31% Similarity=0.412 Sum_probs=13.4
Q ss_pred EEEeeCCCCCCcccee
Q 047385 81 TVITYGQTGAGKTFSM 96 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm 96 (483)
.|+..|++|||||...
T Consensus 4 ~i~l~G~~gsGKst~a 19 (175)
T cd00227 4 IIILNGGSSAGKSSIA 19 (175)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788999999998763
No 437
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.72 E-value=2.2e+02 Score=27.73 Aligned_cols=35 Identities=31% Similarity=0.277 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047385 408 LQTITSLQHMVEDLVRAVEELKSENKALKTRIAAA 442 (483)
Q Consensus 408 ~~~~~~~~~~~~~l~~~~~~~~~e~~~l~~~~~~~ 442 (483)
.+.+...++.++-+...++.++.|...+++-|.+.
T Consensus 92 eqeik~~q~elEvl~~n~Q~lkeE~dd~keiIs~k 126 (246)
T KOG4657|consen 92 EQEIKATQSELEVLRRNLQLLKEEKDDSKEIISQK 126 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 34566667777777777777777777666655543
No 438
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=35.65 E-value=16 Score=41.08 Aligned_cols=19 Identities=26% Similarity=0.496 Sum_probs=16.0
Q ss_pred eEEEeeCCCCCCccceecC
Q 047385 80 GTVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 80 ~ti~ayG~tgSGKT~Tm~G 98 (483)
+-++..|..|||||.||..
T Consensus 15 ~~~~V~Ag~GSGKT~~L~~ 33 (664)
T TIGR01074 15 GPCLVLAGAGSGKTRVITN 33 (664)
T ss_pred CCEEEEecCCCCHHHHHHH
Confidence 4567889999999999965
No 439
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=35.64 E-value=3.4e+02 Score=27.75 Aligned_cols=11 Identities=18% Similarity=0.419 Sum_probs=4.8
Q ss_pred HHHHHHHHhhh
Q 047385 459 SIVHKISDRLS 469 (483)
Q Consensus 459 ~~~~~~~~~~~ 469 (483)
+-|.++..++.
T Consensus 276 ~Ev~~Lk~~~~ 286 (325)
T PF08317_consen 276 SEVKRLKAKVD 286 (325)
T ss_pred HHHHHHHHHHH
Confidence 33444444433
No 440
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=35.57 E-value=32 Score=39.37 Aligned_cols=36 Identities=33% Similarity=0.461 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHhhcCc------ceEEEeeCCCCCCccce
Q 047385 59 QAEVFEFLALPIIRDAFNGM------NGTVITYGQTGAGKTFS 95 (483)
Q Consensus 59 Q~~vf~~~~~plv~~~l~G~------n~ti~ayG~tgSGKT~T 95 (483)
|++.-+.+. ..+.....|. .++++-+|+||+|||++
T Consensus 459 Q~~ai~~l~-~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~l 500 (731)
T TIGR02639 459 QDEAIDSLV-SSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTEL 500 (731)
T ss_pred cHHHHHHHH-HHHHHHhcCCCCCCCCceeEEEECCCCccHHHH
No 441
>PRK11637 AmiB activator; Provisional
Probab=35.56 E-value=2.8e+02 Score=29.40 Aligned_cols=87 Identities=13% Similarity=0.204 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHH---HHHHHhcccccCCCchhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047385 359 ESMERILNKLRERLDVENVNLL---EELFIMEGIILDPNSVEDLDLAFEDVTLQTITSLQHMVEDLVRAVEELKSENKAL 435 (483)
Q Consensus 359 ~~~~~~~~~l~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~l 435 (483)
...+..++.++.+++....++. .++.... .....++..+... ...+..+++.+..+...+.+++.+...+
T Consensus 43 ~~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~------~~l~~l~~qi~~~-~~~i~~~~~~i~~~~~ei~~l~~eI~~~ 115 (428)
T PRK11637 43 SDNRDQLKSIQQDIAAKEKSVRQQQQQRASLL------AQLKKQEEAISQA-SRKLRETQNTLNQLNKQIDELNASIAKL 115 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhcCchhhhhhh
Q 047385 436 KTRIAAAGKIDAFHKEA 452 (483)
Q Consensus 436 ~~~~~~~~~~~~~~~~~ 452 (483)
+.+++..+.....+..+
T Consensus 116 q~~l~~~~~~l~~rlra 132 (428)
T PRK11637 116 EQQQAAQERLLAAQLDA 132 (428)
T ss_pred HHHHHHHHHHHHHHHHH
No 442
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=35.55 E-value=35 Score=39.78 Aligned_cols=17 Identities=35% Similarity=0.606 Sum_probs=14.7
Q ss_pred eEEEeeCCCCCCcccee
Q 047385 80 GTVITYGQTGAGKTFSM 96 (483)
Q Consensus 80 ~ti~ayG~tgSGKT~Tm 96 (483)
++++-+|+||+|||++.
T Consensus 597 ~~~lf~Gp~GvGKT~lA 613 (852)
T TIGR03345 597 GVFLLVGPSGVGKTETA 613 (852)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46788999999999875
No 443
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=35.54 E-value=20 Score=33.04 Aligned_cols=96 Identities=17% Similarity=0.216 Sum_probs=50.4
Q ss_pred cCcceEEEeeCCCCCCccceecCCCCCCccccccCchhhhHHHHHHhhhcCCCCcEEEEEEeEEEEecceeec-ccCCCC
Q 047385 76 NGMNGTVITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTVDELFDCMKSSDASVKFTIKLSMVEIYMEKVRD-LFDLSR 154 (483)
Q Consensus 76 ~G~n~ti~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyne~v~D-LL~~~~ 154 (483)
..++..|+-+|.+||||+.. .+.|++..... . .-.|.+.|-.+..+.+-. |+....
T Consensus 19 a~~~~pVlI~GE~GtGK~~l--------------------A~~IH~~s~r~-~--~pfi~vnc~~~~~~~~e~~LFG~~~ 75 (168)
T PF00158_consen 19 ASSDLPVLITGETGTGKELL--------------------ARAIHNNSPRK-N--GPFISVNCAALPEELLESELFGHEK 75 (168)
T ss_dssp TTSTS-EEEECSTTSSHHHH--------------------HHHHHHCSTTT-T--S-EEEEETTTS-HHHHHHHHHEBCS
T ss_pred hCCCCCEEEEcCCCCcHHHH--------------------HHHHHHhhhcc-c--CCeEEEehhhhhcchhhhhhhcccc
Confidence 47778999999999999543 33344333222 1 223334433333332221 222111
Q ss_pred ---------CcceeeeccCCceEecCcEEEEecCHHHHHHHHHhhhhcc
Q 047385 155 ---------DNIQIKESRVQGILLSGVTEIYVFNSAEALQSLASGISNR 194 (483)
Q Consensus 155 ---------~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R 194 (483)
..-.+.....+..++.++...+...-..++++|+.+.-.|
T Consensus 76 ~~~~~~~~~~~G~l~~A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~ 124 (168)
T PF00158_consen 76 GAFTGARSDKKGLLEQANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTR 124 (168)
T ss_dssp SSSTTTSSEBEHHHHHTTTSEEEEETGGGS-HHHHHHHHHHHHHSEEEC
T ss_pred ccccccccccCCceeeccceEEeecchhhhHHHHHHHHHHHHhhchhcc
Confidence 1112222334556888888888777778888888765443
No 444
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=35.42 E-value=5.9e+02 Score=27.35 Aligned_cols=117 Identities=13% Similarity=0.123 Sum_probs=56.2
Q ss_pred CCcceeeeEeeCCCCCCHHHHHHHHHHHHHhcccccCCcccccccchhhhcccccccchHHHHHHHHHHHHHHhHHHHHH
Q 047385 300 GNSRTALLCCCSPSTSNSAESLSTLRFGTRAKHIKASPHAHCSKESNAKKHGVYEATKDESMERILNKLRERLDVENVNL 379 (483)
Q Consensus 300 Gns~t~mI~~isp~~~~~~ETlsTL~fa~rak~I~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 379 (483)
+++..+=|..-+|++.-..+..+++-=+-.-..+.. +.. ......+.++..+.+++.+++....++
T Consensus 119 ~~s~vi~Is~~~~dP~~Aa~i~n~l~~~yi~~~~~~----~~~----------~~~~~~~fl~~ql~~~~~~L~~ae~~l 184 (498)
T TIGR03007 119 GRDNLFTISYEDKDPELAKDVVQTLLTIFVEETLGS----KRQ----------DSDSAQRFIDEQIKTYEKKLEAAENRL 184 (498)
T ss_pred CCCCeEEEEeeCCCHHHHHHHHHHHHHHHHHhhccc----chh----------hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666677777777766666666521111111100 000 001123455666777777777665554
Q ss_pred HHHHHHhcccccCCCchhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047385 380 LEELFIMEGIILDPNSVEDLDLAFEDVTLQTITSLQHMVEDLVRAVEELKSENKALKTRIA 440 (483)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~l~~~~~ 440 (483)
.+ ....++.+ .+.... .....+..+++.+.+.+..+.+.+.....|+.++.
T Consensus 185 ~~-f~~~~~~~-~~~~~~--------~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~ 235 (498)
T TIGR03007 185 KA-FKQENGGI-LPDQEG--------DYYSEISEAQEELEAARLELNEAIAQRDALKRQLG 235 (498)
T ss_pred HH-HHHhCccc-Cccchh--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 43 33344443 222111 11233445555555555555555555555555544
No 445
>PRK10689 transcription-repair coupling factor; Provisional
Probab=35.39 E-value=29 Score=41.85 Aligned_cols=38 Identities=18% Similarity=0.212 Sum_probs=24.4
Q ss_pred cCCCchHHHHHHHHHHHHHHhhcCcceEEEeeCCCCCCccce
Q 047385 54 YEKSEQAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFS 95 (483)
Q Consensus 54 ~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~T 95 (483)
.+...|.+.+..+...+ -.+...-++.+|+||||||-+
T Consensus 600 ~~T~~Q~~aI~~il~d~----~~~~~~d~Ll~a~TGsGKT~v 637 (1147)
T PRK10689 600 ETTPDQAQAINAVLSDM----CQPLAMDRLVCGDVGFGKTEV 637 (1147)
T ss_pred CCCHHHHHHHHHHHHHh----hcCCCCCEEEEcCCCcCHHHH
Confidence 45556766665544332 233334478899999999964
No 446
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=35.39 E-value=33 Score=35.05 Aligned_cols=30 Identities=17% Similarity=0.252 Sum_probs=22.3
Q ss_pred HHHHHHHhhcC-c--ceEEEeeCCCCCCcccee
Q 047385 67 ALPIIRDAFNG-M--NGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 67 ~~plv~~~l~G-~--n~ti~ayG~tgSGKT~Tm 96 (483)
+-+-+|.++.| + ...+.-||++|||||..+
T Consensus 81 G~~~LD~lLgGGi~~G~iteI~G~~GsGKTql~ 113 (313)
T TIGR02238 81 GSQALDGILGGGIESMSITEVFGEFRCGKTQLS 113 (313)
T ss_pred CCHHHHHHhCCCCcCCeEEEEECCCCCCcCHHH
Confidence 34668888875 3 234668999999999865
No 447
>PRK02496 adk adenylate kinase; Provisional
Probab=35.38 E-value=18 Score=33.34 Aligned_cols=15 Identities=40% Similarity=0.558 Sum_probs=12.4
Q ss_pred EEeeCCCCCCcccee
Q 047385 82 VITYGQTGAGKTFSM 96 (483)
Q Consensus 82 i~ayG~tgSGKT~Tm 96 (483)
|+..|++|||||...
T Consensus 4 i~i~G~pGsGKst~a 18 (184)
T PRK02496 4 LIFLGPPGAGKGTQA 18 (184)
T ss_pred EEEECCCCCCHHHHH
Confidence 567899999998754
No 448
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=35.30 E-value=22 Score=38.22 Aligned_cols=41 Identities=20% Similarity=0.160 Sum_probs=24.7
Q ss_pred eecEEecCCCchHHHHHHHHHHHHHHhhcCc-ceEEEeeCCCCCCcccee
Q 047385 48 GFDRVFYEKSEQAEVFEFLALPIIRDAFNGM-NGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 48 ~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~-n~ti~ayG~tgSGKT~Tm 96 (483)
+||.|++ |+.+-. .+...+-.|. ...++-||+.|+|||.+.
T Consensus 15 ~~~diiG----q~~~v~----~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A 56 (451)
T PRK06305 15 TFSEILG----QDAVVA----VLKNALRFNRAAHAYLFSGIRGTGKTTLA 56 (451)
T ss_pred CHHHhcC----cHHHHH----HHHHHHHcCCCceEEEEEcCCCCCHHHHH
Confidence 5677775 333322 2223333453 345677999999999776
No 449
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=35.24 E-value=23 Score=40.66 Aligned_cols=24 Identities=25% Similarity=0.249 Sum_probs=18.1
Q ss_pred HHHhhcCcceEEEeeCCCCCCcccee
Q 047385 71 IRDAFNGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 71 v~~~l~G~n~ti~ayG~tgSGKT~Tm 96 (483)
+..+++|.|..+ --+||||||.+.
T Consensus 45 i~~il~G~nvvv--~apTGSGKTla~ 68 (742)
T TIGR03817 45 AELAHAGRHVVV--ATGTASGKSLAY 68 (742)
T ss_pred HHHHHCCCCEEE--ECCCCCcHHHHH
Confidence 345678999655 558999999864
No 450
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=35.23 E-value=18 Score=36.05 Aligned_cols=15 Identities=33% Similarity=0.565 Sum_probs=13.1
Q ss_pred EEEeeCCCCCCccce
Q 047385 81 TVITYGQTGAGKTFS 95 (483)
Q Consensus 81 ti~ayG~tgSGKT~T 95 (483)
.|+..|.+|||||+.
T Consensus 4 liil~G~pGSGKSTl 18 (300)
T PHA02530 4 IILTVGVPGSGKSTW 18 (300)
T ss_pred EEEEEcCCCCCHHHH
Confidence 577899999999876
No 451
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=35.15 E-value=2.9e+02 Score=32.36 Aligned_cols=33 Identities=21% Similarity=0.322 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047385 408 LQTITSLQHMVEDLVRAVEELKSENKALKTRIA 440 (483)
Q Consensus 408 ~~~~~~~~~~~~~l~~~~~~~~~e~~~l~~~~~ 440 (483)
.+.|.+..+.+..|+..++++.+++..+.++..
T Consensus 524 dqTI~KfRelva~Lqdqlqe~~dq~~Sseees~ 556 (1243)
T KOG0971|consen 524 DQTIKKFRELVAHLQDQLQELTDQQESSEEESQ 556 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhc
Confidence 455666666666666666666666655554433
No 452
>PRK14528 adenylate kinase; Provisional
Probab=35.06 E-value=18 Score=33.67 Aligned_cols=16 Identities=38% Similarity=0.557 Sum_probs=13.1
Q ss_pred EEEeeCCCCCCcccee
Q 047385 81 TVITYGQTGAGKTFSM 96 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm 96 (483)
.|+..|++|||||+..
T Consensus 3 ~i~i~G~pGsGKtt~a 18 (186)
T PRK14528 3 NIIFMGPPGAGKGTQA 18 (186)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678999999998764
No 453
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=35.03 E-value=20 Score=33.71 Aligned_cols=17 Identities=41% Similarity=0.585 Sum_probs=12.6
Q ss_pred eEEEeeCCCCCCcccee
Q 047385 80 GTVITYGQTGAGKTFSM 96 (483)
Q Consensus 80 ~ti~ayG~tgSGKT~Tm 96 (483)
-+|+-.|+.|||||..+
T Consensus 4 ~~vlL~Gps~SGKTaLf 20 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALF 20 (181)
T ss_dssp -EEEEE-STTSSHHHHH
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 36888999999998654
No 454
>PRK01184 hypothetical protein; Provisional
Probab=34.86 E-value=19 Score=33.05 Aligned_cols=15 Identities=27% Similarity=0.275 Sum_probs=12.6
Q ss_pred EEEeeCCCCCCccce
Q 047385 81 TVITYGQTGAGKTFS 95 (483)
Q Consensus 81 ti~ayG~tgSGKT~T 95 (483)
.|+..|+.|||||+.
T Consensus 3 ~i~l~G~~GsGKsT~ 17 (184)
T PRK01184 3 IIGVVGMPGSGKGEF 17 (184)
T ss_pred EEEEECCCCCCHHHH
Confidence 467799999999884
No 455
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=34.86 E-value=22 Score=32.72 Aligned_cols=26 Identities=27% Similarity=0.537 Sum_probs=18.7
Q ss_pred HHHHHhhcCcceEEEeeCCCCCCcccee
Q 047385 69 PIIRDAFNGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 69 plv~~~l~G~n~ti~ayG~tgSGKT~Tm 96 (483)
.-+...+.| -+++-.|++|.|||..+
T Consensus 27 ~~l~~~l~~--k~~vl~G~SGvGKSSLi 52 (161)
T PF03193_consen 27 EELKELLKG--KTSVLLGQSGVGKSSLI 52 (161)
T ss_dssp HHHHHHHTT--SEEEEECSTTSSHHHHH
T ss_pred HHHHHHhcC--CEEEEECCCCCCHHHHH
Confidence 334566677 45556899999998875
No 456
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=34.78 E-value=25 Score=38.63 Aligned_cols=45 Identities=20% Similarity=0.450 Sum_probs=28.9
Q ss_pred eEeecEEecCCCchHHHHHHHHHHHHHHhhcCcceEEEeeCCCCCCcccee
Q 047385 46 KFGFDRVFYEKSEQAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 46 ~F~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm 96 (483)
.|.||.+++....=..+.+. +.. +...+..|+-+|.+||||++.-
T Consensus 208 ~~~f~~iiG~S~~m~~~~~~-----i~~-~A~~~~pVLI~GE~GTGKe~lA 252 (526)
T TIGR02329 208 RYRLDDLLGASAPMEQVRAL-----VRL-YARSDATVLILGESGTGKELVA 252 (526)
T ss_pred ccchhheeeCCHHHHHHHHH-----HHH-HhCCCCcEEEECCCCcCHHHHH
Confidence 47788887754432222222 222 3456788999999999997653
No 457
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=34.69 E-value=20 Score=38.24 Aligned_cols=20 Identities=25% Similarity=0.396 Sum_probs=16.4
Q ss_pred ceEEEeeCCCCCCccceecC
Q 047385 79 NGTVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 79 n~ti~ayG~tgSGKT~Tm~G 98 (483)
...++..|++|||||.|...
T Consensus 99 p~vi~~vG~~GsGKTTtaak 118 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGK 118 (428)
T ss_pred CEEEEEECCCCCcHHHHHHH
Confidence 35688889999999999644
No 458
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=34.66 E-value=18 Score=34.91 Aligned_cols=16 Identities=25% Similarity=0.482 Sum_probs=13.0
Q ss_pred EEeeCCCCCCccceec
Q 047385 82 VITYGQTGAGKTFSME 97 (483)
Q Consensus 82 i~ayG~tgSGKT~Tm~ 97 (483)
..-.|+.|||||..|-
T Consensus 26 ~~i~GpNGsGKStll~ 41 (243)
T cd03272 26 NVVVGRNGSGKSNFFA 41 (243)
T ss_pred EEEECCCCCCHHHHHH
Confidence 3467999999999873
No 459
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=34.65 E-value=22 Score=41.94 Aligned_cols=28 Identities=18% Similarity=0.298 Sum_probs=21.2
Q ss_pred HHHHHhhcCcceEEEeeCCCCCCccceec
Q 047385 69 PIIRDAFNGMNGTVITYGQTGAGKTFSME 97 (483)
Q Consensus 69 plv~~~l~G~n~ti~ayG~tgSGKT~Tm~ 97 (483)
..|..++.+.+. ++..|..|+||||+|-
T Consensus 353 ~Av~~il~s~~v-~vv~G~AGTGKTT~l~ 380 (988)
T PRK13889 353 DALAHVTDGRDL-GVVVGYAGTGKSAMLG 380 (988)
T ss_pred HHHHHHhcCCCe-EEEEeCCCCCHHHHHH
Confidence 356677777664 4588999999999874
No 460
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=34.46 E-value=29 Score=40.88 Aligned_cols=26 Identities=23% Similarity=0.124 Sum_probs=17.6
Q ss_pred HHhhcCcceEEEeeCCCCCCccceec
Q 047385 72 RDAFNGMNGTVITYGQTGAGKTFSME 97 (483)
Q Consensus 72 ~~~l~G~n~ti~ayG~tgSGKT~Tm~ 97 (483)
.+.-.+...-++..|+||||||-+.+
T Consensus 465 ~d~~~~~~~d~Ll~adTGsGKT~val 490 (926)
T TIGR00580 465 ADMESPRPMDRLVCGDVGFGKTEVAM 490 (926)
T ss_pred hhhcccCcCCEEEECCCCccHHHHHH
Confidence 33334444456889999999997653
No 461
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=34.38 E-value=17 Score=38.87 Aligned_cols=45 Identities=27% Similarity=0.299 Sum_probs=27.1
Q ss_pred cCcceEEEeeCCCCCCccceecCCCCCCccccccCchhhhHHHHHHhhhc
Q 047385 76 NGMNGTVITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTVDELFDCMKS 125 (483)
Q Consensus 76 ~G~n~ti~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~i~~ 125 (483)
.++|. +-.|++|+||||...+-.... .-..| -+-.+..||..+..
T Consensus 208 ~~~Nl--i~lGp~GTGKThla~~l~~~~--a~~sG-~f~T~a~Lf~~L~~ 252 (449)
T TIGR02688 208 PNYNL--IELGPKGTGKSYIYNNLSPYV--ILISG-GTITVAKLFYNIST 252 (449)
T ss_pred cCCcE--EEECCCCCCHHHHHHHHhHHH--HHHcC-CcCcHHHHHHHHHH
Confidence 67776 458999999999876521110 01134 34456667766654
No 462
>PRK11823 DNA repair protein RadA; Provisional
Probab=34.33 E-value=22 Score=38.15 Aligned_cols=31 Identities=19% Similarity=0.387 Sum_probs=23.8
Q ss_pred HHHHHHHhhcC-c--ceEEEeeCCCCCCccceec
Q 047385 67 ALPIIRDAFNG-M--NGTVITYGQTGAGKTFSME 97 (483)
Q Consensus 67 ~~plv~~~l~G-~--n~ti~ayG~tgSGKT~Tm~ 97 (483)
+-+=+|.++.| + ...++-+|++|+|||..+.
T Consensus 65 Gi~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~l 98 (446)
T PRK11823 65 GIGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLL 98 (446)
T ss_pred CcHHHHHHhcCCccCCEEEEEECCCCCCHHHHHH
Confidence 34567888864 3 5578889999999998664
No 463
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=34.29 E-value=17 Score=33.64 Aligned_cols=16 Identities=31% Similarity=0.526 Sum_probs=13.4
Q ss_pred EEEeeCCCCCCcccee
Q 047385 81 TVITYGQTGAGKTFSM 96 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm 96 (483)
.+...|++|||||+.+
T Consensus 5 ~i~l~G~sGsGKSTl~ 20 (176)
T PRK09825 5 SYILMGVSGSGKSLIG 20 (176)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4667899999999875
No 464
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=34.27 E-value=15 Score=42.53 Aligned_cols=16 Identities=38% Similarity=0.654 Sum_probs=13.5
Q ss_pred EEEeeCCCCCCcccee
Q 047385 81 TVITYGQTGAGKTFSM 96 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm 96 (483)
-.+..|+||||||++|
T Consensus 443 n~~I~G~tGsGKS~l~ 458 (811)
T PRK13873 443 HTLVVGPTGAGKSVLL 458 (811)
T ss_pred eEEEECCCCCCHHHHH
Confidence 3456899999999998
No 465
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=34.26 E-value=12 Score=34.15 Aligned_cols=13 Identities=31% Similarity=0.555 Sum_probs=11.0
Q ss_pred eCCCCCCccceec
Q 047385 85 YGQTGAGKTFSME 97 (483)
Q Consensus 85 yG~tgSGKT~Tm~ 97 (483)
.|++|||||+.+-
T Consensus 1 ~G~sGsGKSTla~ 13 (163)
T PRK11545 1 MGVSGSGKSAVAS 13 (163)
T ss_pred CCCCCCcHHHHHH
Confidence 4999999998863
No 466
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=34.25 E-value=27 Score=38.44 Aligned_cols=44 Identities=18% Similarity=0.360 Sum_probs=27.6
Q ss_pred eEeecEEecCCCchHHHHHHHHHHHHHHhhcCcceEEEeeCCCCCCccce
Q 047385 46 KFGFDRVFYEKSEQAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFS 95 (483)
Q Consensus 46 ~F~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~T 95 (483)
.|.||.+++....=.++.+. +.. +...+..|+-+|.+||||++.
T Consensus 215 ~~~f~~iiG~S~~m~~~~~~-----i~~-~A~s~~pVLI~GE~GTGKe~~ 258 (538)
T PRK15424 215 RYVLGDLLGQSPQMEQVRQT-----ILL-YARSSAAVLIQGETGTGKELA 258 (538)
T ss_pred ccchhheeeCCHHHHHHHHH-----HHH-HhCCCCcEEEECCCCCCHHHH
Confidence 36677777654432222222 222 345678899999999999654
No 467
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=34.25 E-value=18 Score=32.93 Aligned_cols=17 Identities=29% Similarity=0.491 Sum_probs=13.3
Q ss_pred EEeeCCCCCCccceecC
Q 047385 82 VITYGQTGAGKTFSMEG 98 (483)
Q Consensus 82 i~ayG~tgSGKT~Tm~G 98 (483)
++-.|++|+|||.+...
T Consensus 3 ~~~~G~~G~GKTt~~~~ 19 (173)
T cd03115 3 ILLVGLQGVGKTTTAAK 19 (173)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 45579999999988643
No 468
>COG4839 FtsL Protein required for the initiation of cell division [Cell division and chromosome partitioning]
Probab=34.15 E-value=84 Score=27.41 Aligned_cols=44 Identities=25% Similarity=0.324 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhcchh
Q 047385 413 SLQHMVEDLVRAVEELKSENKALKTRIAAAGKIDAFHKEAGENG 456 (483)
Q Consensus 413 ~~~~~~~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~ 456 (483)
+.++++.+|..+|.+-+.+|..|+.++..|....-+..-|...|
T Consensus 64 qvq~ei~~Le~kIs~q~~e~~dlkqeV~dLss~eRIldiAkk~g 107 (120)
T COG4839 64 QVQGEITDLESKISEQKTENDDLKQEVKDLSSPERILDIAKKAG 107 (120)
T ss_pred HHHhHHHHHHHHHHHHHhhhhhHHHHHHHhccHHHHHHHHHHcc
Confidence 56778899999999999999999999999987665444444444
No 469
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=34.14 E-value=18 Score=35.23 Aligned_cols=15 Identities=33% Similarity=0.459 Sum_probs=12.9
Q ss_pred EEeeCCCCCCcccee
Q 047385 82 VITYGQTGAGKTFSM 96 (483)
Q Consensus 82 i~ayG~tgSGKT~Tm 96 (483)
|+-.|..|||||+.-
T Consensus 2 Ivl~G~pGSGKST~a 16 (249)
T TIGR03574 2 IILTGLPGVGKSTFS 16 (249)
T ss_pred EEEEcCCCCCHHHHH
Confidence 677899999999864
No 470
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=34.12 E-value=22 Score=39.55 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=18.0
Q ss_pred HHHhhcCcceEEEeeCCCCCCccceecC
Q 047385 71 IRDAFNGMNGTVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 71 v~~~l~G~n~ti~ayG~tgSGKT~Tm~G 98 (483)
+..++. +...+..|..|||||||+..
T Consensus 154 ~~~al~--~~~~vitGgpGTGKTt~v~~ 179 (586)
T TIGR01447 154 VALALK--SNFSLITGGPGTGKTTTVAR 179 (586)
T ss_pred HHHHhh--CCeEEEEcCCCCCHHHHHHH
Confidence 444454 34456689999999999743
No 471
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=34.12 E-value=27 Score=39.17 Aligned_cols=40 Identities=25% Similarity=0.365 Sum_probs=25.4
Q ss_pred eecEEecCCCchHHHHHHHHHHHHHHhh-cC-cceEEEeeCCCCCCcccee
Q 047385 48 GFDRVFYEKSEQAEVFEFLALPIIRDAF-NG-MNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 48 ~FD~Vf~~~~~Q~~vf~~~~~plv~~~l-~G-~n~ti~ayG~tgSGKT~Tm 96 (483)
+||.|++ |+.+.... ..++ .| ....++-||+.|+|||++.
T Consensus 14 ~f~dviG----Qe~vv~~L-----~~~l~~~rl~ha~Lf~Gp~GvGKTtlA 55 (618)
T PRK14951 14 SFSEMVG----QEHVVQAL-----TNALTQQRLHHAYLFTGTRGVGKTTVS 55 (618)
T ss_pred CHHHhcC----cHHHHHHH-----HHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 5677765 55555432 2223 33 3346688999999999876
No 472
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=33.89 E-value=36 Score=39.07 Aligned_cols=37 Identities=24% Similarity=0.386 Sum_probs=27.1
Q ss_pred HHHHHHH-HHHHHHhhcCcceEEEeeCCCCCCccceecC
Q 047385 61 EVFEFLA-LPIIRDAFNGMNGTVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 61 ~vf~~~~-~plv~~~l~G~n~ti~ayG~tgSGKT~Tm~G 98 (483)
.-|+..+ ..+++.+-+|.+-.+++. +||+|||+|-+-
T Consensus 167 RyyQ~~AI~rv~Eaf~~g~~raLlvM-ATGTGKTrTAia 204 (875)
T COG4096 167 RYYQIIAIRRVIEAFSKGQNRALLVM-ATGTGKTRTAIA 204 (875)
T ss_pred hHHHHHHHHHHHHHHhcCCceEEEEE-ecCCCcceeHHH
Confidence 3444433 667788889999965554 799999999765
No 473
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=33.86 E-value=20 Score=37.98 Aligned_cols=14 Identities=43% Similarity=0.942 Sum_probs=12.1
Q ss_pred EEEeeCCCCCCccc
Q 047385 81 TVITYGQTGAGKTF 94 (483)
Q Consensus 81 ti~ayG~tgSGKT~ 94 (483)
-|+-||++|+|||-
T Consensus 386 NilfyGPPGTGKTm 399 (630)
T KOG0742|consen 386 NILFYGPPGTGKTM 399 (630)
T ss_pred heeeeCCCCCCchH
Confidence 47889999999973
No 474
>PRK14738 gmk guanylate kinase; Provisional
Probab=33.82 E-value=20 Score=33.98 Aligned_cols=19 Identities=26% Similarity=0.350 Sum_probs=14.4
Q ss_pred cceEEEeeCCCCCCcccee
Q 047385 78 MNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 78 ~n~ti~ayG~tgSGKT~Tm 96 (483)
....|+-.|++|||||..+
T Consensus 12 ~~~~ivi~GpsG~GK~tl~ 30 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVL 30 (206)
T ss_pred CCeEEEEECcCCCCHHHHH
Confidence 3345667899999998765
No 475
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=33.81 E-value=19 Score=33.38 Aligned_cols=15 Identities=40% Similarity=0.408 Sum_probs=12.4
Q ss_pred EEeeCCCCCCcccee
Q 047385 82 VITYGQTGAGKTFSM 96 (483)
Q Consensus 82 i~ayG~tgSGKT~Tm 96 (483)
|...|.+|||||+..
T Consensus 2 i~i~G~sgsGKttla 16 (179)
T cd02028 2 VGIAGPSGSGKTTFA 16 (179)
T ss_pred EEEECCCCCCHHHHH
Confidence 556799999999874
No 476
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=33.78 E-value=74 Score=29.19 Aligned_cols=26 Identities=27% Similarity=0.443 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Q 047385 419 EDLVRAVEELKSENKALKTRIAAAGK 444 (483)
Q Consensus 419 ~~l~~~~~~~~~e~~~l~~~~~~~~~ 444 (483)
++|...+.+++.++..|..++..+..
T Consensus 112 ~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 112 EELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455556666666666666666554
No 477
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=33.71 E-value=4.7e+02 Score=25.72 Aligned_cols=30 Identities=30% Similarity=0.495 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047385 413 SLQHMVEDLVRAVEELKSENKALKTRIAAA 442 (483)
Q Consensus 413 ~~~~~~~~l~~~~~~~~~e~~~l~~~~~~~ 442 (483)
++...+.++...++.++.+.+.++.++...
T Consensus 107 ~le~el~~l~~~~~~l~~~i~~l~~~~~~~ 136 (239)
T COG1579 107 SLEDELAELMEEIEKLEKEIEDLKERLERL 136 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444443
No 478
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=33.70 E-value=22 Score=36.32 Aligned_cols=16 Identities=31% Similarity=0.414 Sum_probs=13.6
Q ss_pred EEEeeCCCCCCcccee
Q 047385 81 TVITYGQTGAGKTFSM 96 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm 96 (483)
.|+-+|+|+||||..-
T Consensus 5 ~i~I~GPTAsGKT~la 20 (308)
T COG0324 5 LIVIAGPTASGKTALA 20 (308)
T ss_pred EEEEECCCCcCHHHHH
Confidence 4778999999999774
No 479
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=33.68 E-value=29 Score=39.07 Aligned_cols=33 Identities=24% Similarity=0.181 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHHHhhcCcceEEEeeCCCCCCccceec
Q 047385 59 QAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSME 97 (483)
Q Consensus 59 Q~~vf~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm~ 97 (483)
|.++++.+...+ -+| ..+++-.+||+|||+...
T Consensus 2 Q~~~~~~i~~al----~~~--~~lliEA~TGtGKTlAYL 34 (636)
T TIGR03117 2 QALFYLNCLTSL----RQK--RIGMLEASTGVGKTLAMI 34 (636)
T ss_pred HHHHHHHHHHHH----hcC--CeEEEEcCCCCcHHHHHH
Confidence 777887755333 233 457888999999997653
No 480
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=33.67 E-value=22 Score=38.95 Aligned_cols=19 Identities=37% Similarity=0.807 Sum_probs=14.9
Q ss_pred Ccce--EEEeeCCCCCCccce
Q 047385 77 GMNG--TVITYGQTGAGKTFS 95 (483)
Q Consensus 77 G~n~--ti~ayG~tgSGKT~T 95 (483)
|++- -|+-|||+|+|||-.
T Consensus 252 Gi~HVKGiLLyGPPGTGKTLi 272 (744)
T KOG0741|consen 252 GIKHVKGILLYGPPGTGKTLI 272 (744)
T ss_pred CccceeeEEEECCCCCChhHH
Confidence 5544 389999999999863
No 481
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=33.47 E-value=18 Score=39.71 Aligned_cols=19 Identities=42% Similarity=0.656 Sum_probs=14.9
Q ss_pred eEEEeeCCCCCCccceecC
Q 047385 80 GTVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 80 ~ti~ayG~tgSGKT~Tm~G 98 (483)
..|.-.|++|+|||+|+..
T Consensus 351 ~vIaLVGPtGvGKTTtaak 369 (559)
T PRK12727 351 GVIALVGPTGAGKTTTIAK 369 (559)
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 3555669999999999844
No 482
>PLN02796 D-glycerate 3-kinase
Probab=33.26 E-value=13 Score=38.46 Aligned_cols=15 Identities=27% Similarity=0.293 Sum_probs=12.1
Q ss_pred EEeeCCCCCCcccee
Q 047385 82 VITYGQTGAGKTFSM 96 (483)
Q Consensus 82 i~ayG~tgSGKT~Tm 96 (483)
|--.|++|||||+.+
T Consensus 103 IGI~G~sGSGKSTLa 117 (347)
T PLN02796 103 IGISAPQGCGKTTLV 117 (347)
T ss_pred EEEECCCCCcHHHHH
Confidence 445699999999875
No 483
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=33.18 E-value=29 Score=37.79 Aligned_cols=29 Identities=24% Similarity=0.371 Sum_probs=22.2
Q ss_pred HHHHHHhhcC---cceEEEeeCCCCCCcccee
Q 047385 68 LPIIRDAFNG---MNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 68 ~plv~~~l~G---~n~ti~ayG~tgSGKT~Tm 96 (483)
-|=+|.++.| ....++.+|.+|||||...
T Consensus 17 I~~LD~~l~GG~p~Gs~~li~G~pGsGKT~l~ 48 (509)
T PRK09302 17 IEGFDDITHGGLPKGRPTLVSGTAGTGKTLFA 48 (509)
T ss_pred chhHHHhhcCCCCCCcEEEEEeCCCCCHHHHH
Confidence 3556777864 4567889999999999754
No 484
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=33.10 E-value=27 Score=36.19 Aligned_cols=31 Identities=16% Similarity=0.275 Sum_probs=22.7
Q ss_pred HHHHHHHHhhcC-c--ceEEEeeCCCCCCcccee
Q 047385 66 LALPIIRDAFNG-M--NGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 66 ~~~plv~~~l~G-~--n~ti~ayG~tgSGKT~Tm 96 (483)
++-+-+|.++.| + .....-||++|||||...
T Consensus 110 TG~~~LD~lLgGGi~~G~ItEI~G~~GsGKTql~ 143 (344)
T PLN03187 110 TGSQALDELLGGGIETRCITEAFGEFRSGKTQLA 143 (344)
T ss_pred CCcHhHHhhcCCCCCCCeEEEEecCCCCChhHHH
Confidence 345678888875 2 334568999999999854
No 485
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=33.04 E-value=25 Score=36.89 Aligned_cols=31 Identities=16% Similarity=0.312 Sum_probs=23.4
Q ss_pred HHHHHHhhcCc---ceEEEeeCCCCCCccceecC
Q 047385 68 LPIIRDAFNGM---NGTVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 68 ~plv~~~l~G~---n~ti~ayG~tgSGKT~Tm~G 98 (483)
-+-+|.++.|- ...++-+|.+|+|||..+.-
T Consensus 68 i~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq 101 (372)
T cd01121 68 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQ 101 (372)
T ss_pred CHHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHH
Confidence 35568888652 45788899999999997753
No 486
>PRK13822 conjugal transfer coupling protein TraG; Provisional
Probab=33.00 E-value=22 Score=40.01 Aligned_cols=18 Identities=22% Similarity=0.266 Sum_probs=15.1
Q ss_pred ceEEEeeCCCCCCcccee
Q 047385 79 NGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 79 n~ti~ayG~tgSGKT~Tm 96 (483)
+.-++++|+||||||..+
T Consensus 224 ~~H~Lv~ApTgsGKt~g~ 241 (641)
T PRK13822 224 STHGLVFAGSGGFKTTSV 241 (641)
T ss_pred CceEEEEeCCCCCccceE
Confidence 345789999999999976
No 487
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=32.99 E-value=19 Score=33.14 Aligned_cols=17 Identities=29% Similarity=0.389 Sum_probs=14.2
Q ss_pred eEEEeeCCCCCCcccee
Q 047385 80 GTVITYGQTGAGKTFSM 96 (483)
Q Consensus 80 ~ti~ayG~tgSGKT~Tm 96 (483)
..|+..|++|||||...
T Consensus 5 ~~I~liG~~GaGKStl~ 21 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIG 21 (172)
T ss_pred CEEEEECCCCcCHHHHH
Confidence 35888999999998764
No 488
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=32.98 E-value=2.9e+02 Score=29.95 Aligned_cols=29 Identities=24% Similarity=0.349 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047385 413 SLQHMVEDLVRAVEELKSENKALKTRIAA 441 (483)
Q Consensus 413 ~~~~~~~~l~~~~~~~~~e~~~l~~~~~~ 441 (483)
+++++.++|+..+++++.....|..+++.
T Consensus 113 ~~~~~~~ql~~~~~~~~~~l~~l~~~l~~ 141 (472)
T TIGR03752 113 ELTKEIEQLKSERQQLQGLIDQLQRRLAG 141 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44445555555555555555556555543
No 489
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=32.95 E-value=19 Score=38.43 Aligned_cols=17 Identities=35% Similarity=0.501 Sum_probs=14.4
Q ss_pred eEEEeeCCCCCCcccee
Q 047385 80 GTVITYGQTGAGKTFSM 96 (483)
Q Consensus 80 ~ti~ayG~tgSGKT~Tm 96 (483)
.-|+-+|++|+|||+..
T Consensus 48 ~~ILLiGppG~GKT~lA 64 (441)
T TIGR00390 48 KNILMIGPTGVGKTEIA 64 (441)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 45888999999999865
No 490
>PRK13721 conjugal transfer ATP-binding protein TraC; Provisional
Probab=32.90 E-value=17 Score=42.22 Aligned_cols=19 Identities=37% Similarity=0.473 Sum_probs=15.3
Q ss_pred ceEEEeeCCCCCCccceec
Q 047385 79 NGTVITYGQTGAGKTFSME 97 (483)
Q Consensus 79 n~ti~ayG~tgSGKT~Tm~ 97 (483)
|.-.+..|.||||||++|-
T Consensus 449 N~N~~I~G~sGsGKS~l~k 467 (844)
T PRK13721 449 NYNMAVCGTSGAGKTGLIQ 467 (844)
T ss_pred cccEEEEcCCCCCHHHHHH
Confidence 3446778999999999983
No 491
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=32.64 E-value=21 Score=37.14 Aligned_cols=20 Identities=30% Similarity=0.554 Sum_probs=18.6
Q ss_pred cCcceEEEeeCCCCCCccce
Q 047385 76 NGMNGTVITYGQTGAGKTFS 95 (483)
Q Consensus 76 ~G~n~ti~ayG~tgSGKT~T 95 (483)
.|+.-++++.|++|+|||.-
T Consensus 18 kG~~ftlmvvG~sGlGKsTf 37 (366)
T KOG2655|consen 18 KGFDFTLMVVGESGLGKSTF 37 (366)
T ss_pred cCCceEEEEecCCCccHHHH
Confidence 89999999999999999864
No 492
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=32.64 E-value=3.3e+02 Score=27.41 Aligned_cols=28 Identities=14% Similarity=0.318 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047385 414 LQHMVEDLVRAVEELKSENKALKTRIAA 441 (483)
Q Consensus 414 ~~~~~~~l~~~~~~~~~e~~~l~~~~~~ 441 (483)
.|-.+++.++.|++|++-.+-.|..+..
T Consensus 115 AQLALKEARkEIkQLkQvieTmrssL~e 142 (305)
T PF15290_consen 115 AQLALKEARKEIKQLKQVIETMRSSLAE 142 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhch
Confidence 3445555555555555555555554443
No 493
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=32.60 E-value=23 Score=40.07 Aligned_cols=21 Identities=24% Similarity=0.275 Sum_probs=17.0
Q ss_pred CcceEEEeeCCCCCCccceec
Q 047385 77 GMNGTVITYGQTGAGKTFSME 97 (483)
Q Consensus 77 G~n~ti~ayG~tgSGKT~Tm~ 97 (483)
+.+.-++++|+||||||..+.
T Consensus 137 ~~~~hvlviApTgSGKgvg~V 157 (670)
T PRK13850 137 GEQPHSLVVAPTRAGKGVGVV 157 (670)
T ss_pred CCCceEEEEecCCCCceeeeh
Confidence 445568899999999998873
No 494
>PRK05541 adenylylsulfate kinase; Provisional
Probab=32.60 E-value=22 Score=32.46 Aligned_cols=16 Identities=31% Similarity=0.412 Sum_probs=13.0
Q ss_pred EEEeeCCCCCCcccee
Q 047385 81 TVITYGQTGAGKTFSM 96 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm 96 (483)
.|+-.|.+|||||+..
T Consensus 9 ~I~i~G~~GsGKst~a 24 (176)
T PRK05541 9 VIWITGLAGSGKTTIA 24 (176)
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5677999999997653
No 495
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=32.56 E-value=23 Score=36.15 Aligned_cols=15 Identities=33% Similarity=0.510 Sum_probs=12.8
Q ss_pred EEEeeCCCCCCccce
Q 047385 81 TVITYGQTGAGKTFS 95 (483)
Q Consensus 81 ti~ayG~tgSGKT~T 95 (483)
.|+..|+||||||..
T Consensus 6 ~i~i~GptgsGKt~l 20 (307)
T PRK00091 6 VIVIVGPTASGKTAL 20 (307)
T ss_pred EEEEECCCCcCHHHH
Confidence 578899999999865
No 496
>PRK13853 type IV secretion system protein VirB4; Provisional
Probab=32.53 E-value=17 Score=41.89 Aligned_cols=17 Identities=35% Similarity=0.532 Sum_probs=14.3
Q ss_pred EEEeeCCCCCCccceec
Q 047385 81 TVITYGQTGAGKTFSME 97 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm~ 97 (483)
-.+.+|+||||||+++.
T Consensus 428 ~~~I~G~tGsGKS~l~~ 444 (789)
T PRK13853 428 MTAIFGPIGRGKTTLMT 444 (789)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46679999999999873
No 497
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=32.41 E-value=38 Score=34.27 Aligned_cols=17 Identities=18% Similarity=0.221 Sum_probs=13.4
Q ss_pred eEEEeeCCCCCCcccee
Q 047385 80 GTVITYGQTGAGKTFSM 96 (483)
Q Consensus 80 ~ti~ayG~tgSGKT~Tm 96 (483)
..|---|++|||||+++
T Consensus 63 ~IIGIaG~~GSGKSTla 79 (290)
T TIGR00554 63 YIISIAGSVAVGKSTTA 79 (290)
T ss_pred EEEEEECCCCCCHHHHH
Confidence 34556699999999886
No 498
>PRK06851 hypothetical protein; Provisional
Probab=32.34 E-value=26 Score=36.62 Aligned_cols=28 Identities=18% Similarity=0.383 Sum_probs=0.0
Q ss_pred HHHHHhhcCcceEEEeeCCCCCCcccee
Q 047385 69 PIIRDAFNGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 69 plv~~~l~G~n~ti~ayG~tgSGKT~Tm 96 (483)
..++.++++.+-.++--|++|+|||..|
T Consensus 204 s~~~~l~~~~~~~~~i~G~pG~GKstl~ 231 (367)
T PRK06851 204 DFVPSLTEGVKNRYFLKGRPGTGKSTML 231 (367)
T ss_pred hhHHhHhcccceEEEEeCCCCCcHHHHH
No 499
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=32.33 E-value=2.1e+02 Score=28.32 Aligned_cols=74 Identities=15% Similarity=0.186 Sum_probs=0.0
Q ss_pred chhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhcchhhHHHHHHHHHhhhhcc
Q 047385 395 SVEDLDLAFEDVTLQTITSLQHMVEDLVRAVEELKSENKALKTRIAAAGKIDAFHKEAGENGYASIVHKISDRLSHLV 472 (483)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (483)
.+.+.-..++.-....-.+|...+.++......++.+|.+|+.+.....+- +..+-..+.+++..|++.|++++
T Consensus 31 ~~reEl~EFQegSrE~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek----~e~q~~q~y~q~s~Leddlsqt~ 104 (333)
T KOG1853|consen 31 QMREELNEFQEGSREIEAELESQLDQLETRNRDLETRNQRLTTEQERNKEK----QEDQRVQFYQQESQLEDDLSQTH 104 (333)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
No 500
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=32.17 E-value=27 Score=39.12 Aligned_cols=23 Identities=17% Similarity=0.355 Sum_probs=0.0
Q ss_pred EEeeCCCCCCccceecCCCCCCccccccCchhhhHHH
Q 047385 82 VITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTVDE 118 (483)
Q Consensus 82 i~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~ 118 (483)
++.+|+||||||..+ +||..+.+
T Consensus 161 vLviapTgSGKg~g~--------------VIPnLL~~ 183 (606)
T PRK13897 161 ALLFAPTGSGKGVGF--------------VIPNLLFW 183 (606)
T ss_pred EEEEcCCCCCcceEE--------------ehhhHHhC
Done!