Query 047385
Match_columns 483
No_of_seqs 305 out of 1490
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 18:37:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047385.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047385hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1goj_A Kinesin, kinesin heavy 100.0 4.5E-95 1.5E-99 742.7 31.4 338 2-346 6-343 (355)
2 2vvg_A Kinesin-2; motor protei 100.0 1.2E-94 4.3E-99 737.6 31.8 332 2-345 4-347 (350)
3 2y65_A Kinesin, kinesin heavy 100.0 9.5E-95 3.2E-99 742.3 29.1 332 2-345 11-345 (365)
4 3bfn_A Kinesin-like protein KI 100.0 6.8E-95 2.3E-99 746.2 26.5 333 2-345 21-359 (388)
5 3cob_A Kinesin heavy chain-lik 100.0 6.8E-94 2.3E-98 736.4 33.8 330 2-343 5-337 (369)
6 3b6u_A Kinesin-like protein KI 100.0 2.9E-94 9.9E-99 739.2 27.9 335 2-344 21-364 (372)
7 2zfi_A Kinesin-like protein KI 100.0 1.8E-93 6E-98 734.2 30.0 335 1-341 3-362 (366)
8 1t5c_A CENP-E protein, centrom 100.0 2.7E-93 9.4E-98 728.0 30.1 332 1-346 3-341 (349)
9 1bg2_A Kinesin; motor protein, 100.0 8.6E-94 2.9E-98 725.7 24.4 319 2-333 7-325 (325)
10 1x88_A Kinesin-like protein KI 100.0 2.7E-93 9.1E-98 731.2 26.8 333 2-341 8-358 (359)
11 3lre_A Kinesin-like protein KI 100.0 9.2E-93 3.2E-97 726.2 29.6 323 2-333 10-355 (355)
12 2owm_A Nckin3-434, related to 100.0 3.3E-92 1.1E-96 739.5 31.9 330 2-341 38-421 (443)
13 2h58_A Kinesin-like protein KI 100.0 6.3E-92 2.2E-96 713.4 31.4 322 2-334 4-329 (330)
14 2wbe_C Bipolar kinesin KRP-130 100.0 1.7E-92 5.7E-97 728.1 25.9 335 2-343 23-371 (373)
15 4a14_A Kinesin, kinesin-like p 100.0 1.1E-91 3.7E-96 716.3 28.6 324 2-331 11-344 (344)
16 3gbj_A KIF13B protein; kinesin 100.0 3.5E-91 1.2E-95 714.3 27.4 323 2-332 1-349 (354)
17 3t0q_A AGR253WP; kinesin, alph 100.0 2.4E-90 8.1E-95 707.3 31.6 325 2-337 5-348 (349)
18 1ry6_A Internal kinesin; kines 100.0 8.7E-91 3E-95 711.8 26.7 329 3-341 1-339 (360)
19 2rep_A Kinesin-like protein KI 100.0 1.7E-90 5.7E-95 712.9 28.8 325 2-333 22-376 (376)
20 1f9v_A Kinesin-like protein KA 100.0 3.1E-90 1E-94 705.5 29.6 326 2-338 3-346 (347)
21 2heh_A KIF2C protein; kinesin, 100.0 2.2E-90 7.6E-95 712.4 24.6 324 2-336 51-385 (387)
22 3nwn_A Kinesin-like protein KI 100.0 6.5E-90 2.2E-94 705.1 26.6 318 2-333 24-359 (359)
23 1v8k_A Kinesin-like protein KI 100.0 4.9E-90 1.7E-94 714.0 25.2 326 2-338 71-407 (410)
24 4etp_A Kinesin-like protein KA 100.0 1.7E-88 5.8E-93 705.4 31.9 327 2-338 59-402 (403)
25 2nr8_A Kinesin-like protein KI 100.0 4.6E-89 1.6E-93 698.6 26.4 318 2-333 23-358 (358)
26 3u06_A Protein claret segregat 100.0 7.1E-88 2.4E-92 700.9 28.7 319 2-337 59-386 (412)
27 3dc4_A Kinesin-like protein NO 100.0 3.6E-87 1.2E-91 681.2 26.5 314 2-338 22-340 (344)
28 4h1g_A Maltose binding protein 100.0 1.2E-81 4E-86 700.9 29.6 322 1-334 373-712 (715)
29 2kin_B Kinesin; motor protein, 100.0 5.5E-32 1.9E-36 226.1 4.5 86 256-344 2-87 (100)
30 3kin_B Kinesin heavy chain; mo 100.0 8.7E-30 3E-34 219.8 10.2 83 259-344 1-83 (117)
31 2o0a_A S.cerevisiae chromosome 99.9 1.7E-26 5.9E-31 223.9 9.2 260 2-338 24-294 (298)
32 3ec2_A DNA replication protein 95.0 0.0069 2.3E-07 54.5 1.5 51 46-97 6-56 (180)
33 2w58_A DNAI, primosome compone 93.6 0.024 8.3E-07 51.7 2.0 52 45-97 20-72 (202)
34 2qgz_A Helicase loader, putati 92.9 0.036 1.2E-06 54.8 2.1 52 46-98 120-171 (308)
35 4etp_B Spindle POLE BODY-assoc 92.3 0.94 3.2E-05 44.6 11.1 210 42-315 89-310 (333)
36 4b4t_K 26S protease regulatory 89.9 0.53 1.8E-05 48.7 7.2 120 5-127 117-265 (428)
37 4b4t_M 26S protease regulatory 89.7 0.27 9.1E-06 51.1 4.8 51 46-96 177-232 (434)
38 3t15_A Ribulose bisphosphate c 89.1 0.17 5.9E-06 49.3 2.7 48 49-96 2-53 (293)
39 1jbk_A CLPB protein; beta barr 88.9 0.21 7.2E-06 43.8 2.9 29 69-97 33-61 (195)
40 4b4t_L 26S protease subunit RP 87.5 0.36 1.2E-05 50.1 4.0 51 46-96 177-232 (437)
41 2p65_A Hypothetical protein PF 87.4 0.25 8.5E-06 43.3 2.4 29 69-97 33-61 (187)
42 2bjv_A PSP operon transcriptio 87.1 0.25 8.4E-06 47.0 2.3 45 46-96 2-46 (265)
43 2r62_A Cell division protease 87.0 0.2 6.8E-06 47.6 1.6 51 45-96 6-61 (268)
44 4b4t_I 26S protease regulatory 86.6 1.8 6.3E-05 44.7 8.6 79 46-127 178-275 (437)
45 3h4m_A Proteasome-activating n 86.5 0.21 7.3E-06 47.8 1.5 51 46-96 13-68 (285)
46 3cf0_A Transitional endoplasmi 86.2 0.24 8.4E-06 48.3 1.7 51 46-96 11-66 (301)
47 3te6_A Regulatory protein SIR3 85.6 0.33 1.1E-05 48.2 2.4 22 75-96 41-62 (318)
48 1ixz_A ATP-dependent metallopr 85.5 0.29 9.8E-06 46.2 1.8 52 45-97 11-67 (254)
49 1l8q_A Chromosomal replication 85.5 0.33 1.1E-05 47.5 2.4 50 46-98 7-56 (324)
50 4b4t_J 26S protease regulatory 84.8 0.49 1.7E-05 48.6 3.2 51 46-96 144-199 (405)
51 1g8p_A Magnesium-chelatase 38 82.9 0.32 1.1E-05 47.8 0.9 44 45-96 19-62 (350)
52 3b9p_A CG5977-PA, isoform A; A 82.3 0.36 1.2E-05 46.5 1.0 51 46-96 17-71 (297)
53 3d8b_A Fidgetin-like protein 1 82.1 0.34 1.1E-05 48.6 0.7 51 46-96 80-134 (357)
54 1xwi_A SKD1 protein; VPS4B, AA 81.3 0.44 1.5E-05 47.1 1.2 50 47-96 9-62 (322)
55 2x8a_A Nuclear valosin-contain 81.2 0.3 1E-05 47.2 -0.0 51 46-96 6-61 (274)
56 1iy2_A ATP-dependent metallopr 81.2 0.52 1.8E-05 45.1 1.7 52 45-97 35-91 (278)
57 1qde_A EIF4A, translation init 81.1 0.66 2.3E-05 42.4 2.3 23 71-95 45-67 (224)
58 3bos_A Putative DNA replicatio 80.8 0.82 2.8E-05 41.8 2.8 46 47-97 25-70 (242)
59 1p9r_A General secretion pathw 80.8 0.69 2.4E-05 47.7 2.5 29 69-97 157-185 (418)
60 2chg_A Replication factor C sm 80.8 0.76 2.6E-05 41.1 2.6 20 77-96 36-55 (226)
61 1vec_A ATP-dependent RNA helic 80.7 0.75 2.6E-05 41.4 2.5 23 72-96 35-57 (206)
62 1d2n_A N-ethylmaleimide-sensit 80.6 0.94 3.2E-05 43.0 3.3 21 76-96 61-81 (272)
63 2qz4_A Paraplegin; AAA+, SPG7, 80.4 0.32 1.1E-05 45.7 -0.2 19 78-96 38-56 (262)
64 2gxq_A Heat resistant RNA depe 80.0 0.76 2.6E-05 41.3 2.3 22 72-95 33-54 (207)
65 2v1u_A Cell division control p 79.8 0.43 1.5E-05 47.3 0.6 38 58-96 23-61 (387)
66 2jee_A YIIU; FTSZ, septum, coi 79.3 12 0.00039 29.4 8.4 28 410-437 21-48 (81)
67 3jvv_A Twitching mobility prot 78.8 0.76 2.6E-05 46.3 2.0 28 70-97 114-141 (356)
68 2z4s_A Chromosomal replication 78.5 0.79 2.7E-05 47.4 2.1 49 45-97 100-148 (440)
69 2kjq_A DNAA-related protein; s 78.4 0.69 2.4E-05 40.3 1.4 18 81-98 38-55 (149)
70 3dkp_A Probable ATP-dependent 78.1 0.93 3.2E-05 42.2 2.3 24 71-96 60-83 (245)
71 3bor_A Human initiation factor 77.8 0.63 2.1E-05 43.4 1.0 25 70-96 60-84 (237)
72 3uk6_A RUVB-like 2; hexameric 77.2 1.2 4E-05 44.1 2.9 47 46-97 40-88 (368)
73 3eie_A Vacuolar protein sortin 77.0 0.62 2.1E-05 45.8 0.8 51 46-96 14-68 (322)
74 1lv7_A FTSH; alpha/beta domain 76.4 0.39 1.3E-05 45.3 -0.9 50 46-96 8-62 (257)
75 2pl3_A Probable ATP-dependent 75.8 1.2 4E-05 41.2 2.3 24 71-96 56-79 (236)
76 1fnn_A CDC6P, cell division co 75.4 1.5 5.1E-05 43.4 3.1 37 59-96 22-61 (389)
77 3syl_A Protein CBBX; photosynt 75.3 1.2 4.1E-05 42.8 2.3 19 78-96 66-84 (309)
78 2eyu_A Twitching motility prot 75.3 1.1 3.9E-05 42.8 2.1 20 78-97 24-43 (261)
79 2yy0_A C-MYC-binding protein; 75.2 4.7 0.00016 29.0 4.8 32 410-441 20-51 (53)
80 3llm_A ATP-dependent RNA helic 75.0 0.99 3.4E-05 42.0 1.5 26 69-96 68-93 (235)
81 1t6n_A Probable ATP-dependent 74.6 1.3 4.6E-05 40.3 2.3 24 71-96 45-68 (220)
82 2c9o_A RUVB-like 1; hexameric 74.3 1.6 5.5E-05 45.1 3.1 46 46-96 33-80 (456)
83 3ly5_A ATP-dependent RNA helic 74.2 0.96 3.3E-05 43.0 1.3 25 70-96 84-108 (262)
84 3b6e_A Interferon-induced heli 74.1 0.72 2.5E-05 41.6 0.3 35 53-97 32-66 (216)
85 3iuy_A Probable ATP-dependent 74.1 1.4 4.6E-05 40.5 2.2 24 71-96 51-74 (228)
86 3vfd_A Spastin; ATPase, microt 73.4 0.88 3E-05 45.9 0.8 51 46-96 111-165 (389)
87 1wrb_A DJVLGB; RNA helicase, D 73.4 1.5 5E-05 41.0 2.3 23 72-96 55-77 (253)
88 2qp9_X Vacuolar protein sortin 73.1 1.1 3.6E-05 44.9 1.3 51 46-96 47-101 (355)
89 3fmo_B ATP-dependent RNA helic 72.2 1.6 5.3E-05 42.5 2.2 27 70-96 122-148 (300)
90 1u0j_A DNA replication protein 71.9 2.1 7.3E-05 41.3 3.1 29 69-97 91-122 (267)
91 1gvn_B Zeta; postsegregational 71.8 3.4 0.00012 40.0 4.5 31 66-96 15-50 (287)
92 2oxc_A Probable ATP-dependent 71.6 1.7 6E-05 40.0 2.3 22 72-95 56-77 (230)
93 4b4t_H 26S protease regulatory 71.5 1 3.4E-05 47.1 0.7 50 47-96 206-260 (467)
94 2zan_A Vacuolar protein sortin 71.4 0.94 3.2E-05 46.8 0.5 51 46-96 130-184 (444)
95 3eiq_A Eukaryotic initiation f 71.2 1.8 6.3E-05 43.0 2.6 26 69-96 69-94 (414)
96 3ber_A Probable ATP-dependent 71.0 1.8 6.1E-05 40.7 2.3 24 71-96 74-97 (249)
97 3fe2_A Probable ATP-dependent 70.9 1.5 5.1E-05 40.8 1.7 23 72-96 61-83 (242)
98 1tue_A Replication protein E1; 70.8 1.2 4.2E-05 41.4 1.1 28 71-98 48-77 (212)
99 3hu3_A Transitional endoplasmi 70.3 1.7 5.7E-05 45.7 2.0 51 46-96 200-255 (489)
100 1gd2_E Transcription factor PA 69.8 6.9 0.00024 29.8 4.9 39 407-445 27-65 (70)
101 2qby_B CDC6 homolog 3, cell di 69.6 2.5 8.5E-05 41.8 3.1 46 46-96 16-62 (384)
102 1q0u_A Bstdead; DEAD protein, 69.3 1.3 4.4E-05 40.5 0.8 23 72-96 36-58 (219)
103 1njg_A DNA polymerase III subu 69.2 2.2 7.7E-05 38.3 2.5 17 80-96 46-62 (250)
104 1sxj_C Activator 1 40 kDa subu 69.1 2.2 7.6E-05 41.9 2.6 42 48-97 23-64 (340)
105 3co5_A Putative two-component 68.8 2.5 8.4E-05 36.1 2.5 20 79-98 27-46 (143)
106 3fmp_B ATP-dependent RNA helic 68.4 2.2 7.6E-05 43.9 2.5 26 70-95 122-147 (479)
107 2qby_A CDC6 homolog 1, cell di 68.2 1.3 4.4E-05 43.6 0.7 20 77-96 43-62 (386)
108 2ewv_A Twitching motility prot 68.0 1.6 5.4E-05 44.1 1.3 28 70-97 127-154 (372)
109 3n70_A Transport activator; si 67.4 1.6 5.6E-05 37.3 1.1 20 77-96 22-41 (145)
110 1sxj_D Activator 1 41 kDa subu 66.9 2.1 7.1E-05 41.8 1.8 42 48-97 35-76 (353)
111 2oap_1 GSPE-2, type II secreti 66.9 2.4 8.1E-05 44.8 2.4 20 76-97 259-278 (511)
112 1ofh_A ATP-dependent HSL prote 66.7 2.4 8.2E-05 40.5 2.2 18 79-96 50-67 (310)
113 3fht_A ATP-dependent RNA helic 66.7 2.3 8E-05 42.2 2.2 26 71-96 56-81 (412)
114 2j0s_A ATP-dependent RNA helic 66.5 2.3 7.8E-05 42.5 2.1 25 70-96 67-91 (410)
115 2jee_A YIIU; FTSZ, septum, coi 66.5 23 0.00077 27.7 7.3 30 413-442 17-46 (81)
116 1kd8_B GABH BLL, GCN4 acid bas 66.3 13 0.00043 24.3 4.7 30 411-440 3-32 (36)
117 1iqp_A RFCS; clamp loader, ext 66.0 2.8 9.6E-05 40.2 2.6 41 49-97 24-64 (327)
118 4fcw_A Chaperone protein CLPB; 65.9 2.2 7.7E-05 40.9 1.9 17 80-96 48-64 (311)
119 3pfi_A Holliday junction ATP-d 65.5 3.3 0.00011 40.3 3.0 44 48-96 27-72 (338)
120 1nkp_B MAX protein, MYC proto- 65.5 9.1 0.00031 29.8 5.0 36 408-443 46-81 (83)
121 1n0w_A DNA repair protein RAD5 65.5 2.5 8.6E-05 38.8 2.0 30 68-97 10-42 (243)
122 2fz4_A DNA repair protein RAD2 65.4 2.4 8.2E-05 39.7 1.9 24 73-98 104-127 (237)
123 3pey_A ATP-dependent RNA helic 64.9 2.7 9.1E-05 41.4 2.2 26 71-96 36-61 (395)
124 2oxj_A Hybrid alpha/beta pepti 64.5 10 0.00036 24.3 4.1 27 411-437 3-29 (34)
125 2z0m_A 337AA long hypothetical 64.5 2.7 9.1E-05 40.4 2.1 24 72-97 26-49 (337)
126 1s2m_A Putative ATP-dependent 63.7 2.7 9.2E-05 41.7 2.0 24 71-96 52-75 (400)
127 2chq_A Replication factor C sm 63.5 2.6 8.9E-05 40.3 1.8 21 76-96 35-55 (319)
128 4b3f_X DNA-binding protein smu 63.1 2.7 9.1E-05 45.5 1.9 28 70-98 197-224 (646)
129 2p5t_B PEZT; postsegregational 63.1 3.9 0.00013 38.5 2.9 36 60-95 12-48 (253)
130 3pvs_A Replication-associated 62.6 2.8 9.7E-05 43.4 1.9 38 58-96 30-67 (447)
131 2w0m_A SSO2452; RECA, SSPF, un 62.3 3.3 0.00011 37.4 2.2 29 69-97 10-41 (235)
132 3c8u_A Fructokinase; YP_612366 61.7 4.6 0.00016 36.5 3.1 29 68-96 9-39 (208)
133 3h1t_A Type I site-specific re 61.7 3.4 0.00012 43.9 2.4 25 72-97 192-216 (590)
134 2i4i_A ATP-dependent RNA helic 61.6 3.2 0.00011 41.4 2.1 23 72-96 47-69 (417)
135 2cvh_A DNA repair and recombin 60.9 3.5 0.00012 37.1 2.1 29 69-97 7-38 (220)
136 3oiy_A Reverse gyrase helicase 60.5 3.5 0.00012 41.4 2.2 23 71-95 30-52 (414)
137 1hqc_A RUVB; extended AAA-ATPa 60.5 4.3 0.00015 39.1 2.7 19 78-96 37-55 (324)
138 3b85_A Phosphate starvation-in 60.0 3.8 0.00013 37.7 2.1 25 70-96 15-39 (208)
139 2dfs_A Myosin-5A; myosin-V, in 59.8 18 0.00061 41.7 8.1 21 76-96 153-173 (1080)
140 1w5s_A Origin recognition comp 59.6 4.2 0.00014 40.5 2.6 25 72-96 40-69 (412)
141 4gp7_A Metallophosphoesterase; 59.4 2.5 8.6E-05 37.2 0.8 17 81-97 11-27 (171)
142 2ce7_A Cell division protein F 58.5 2.2 7.6E-05 44.6 0.3 51 45-96 11-66 (476)
143 1rz3_A Hypothetical protein rb 58.4 5.3 0.00018 36.0 2.8 18 79-96 22-39 (201)
144 4a74_A DNA repair and recombin 58.4 4.1 0.00014 36.9 2.1 28 69-96 12-42 (231)
145 1dh3_A Transcription factor CR 58.4 15 0.0005 26.5 4.6 30 416-445 22-51 (55)
146 1xti_A Probable ATP-dependent 58.3 4 0.00014 40.2 2.1 25 70-96 38-62 (391)
147 1in4_A RUVB, holliday junction 58.0 5.1 0.00017 39.4 2.8 16 81-96 53-68 (334)
148 3fho_A ATP-dependent RNA helic 57.5 4.1 0.00014 42.6 2.1 26 71-96 150-175 (508)
149 2r44_A Uncharacterized protein 57.4 3.1 0.00011 40.5 1.1 17 81-97 48-64 (331)
150 3c3f_A Alpha/beta peptide with 57.2 17 0.00058 23.3 4.1 26 412-437 4-29 (34)
151 1rif_A DAR protein, DNA helica 57.2 2.9 9.8E-05 39.9 0.8 23 74-98 125-147 (282)
152 3i5x_A ATP-dependent RNA helic 57.0 5 0.00017 42.1 2.7 26 70-95 102-127 (563)
153 2dhr_A FTSH; AAA+ protein, hex 57.0 2.1 7.2E-05 45.1 -0.2 51 45-96 26-81 (499)
154 3pxg_A Negative regulator of g 56.5 5.2 0.00018 41.4 2.7 23 76-98 198-220 (468)
155 3lw7_A Adenylate kinase relate 56.4 3.6 0.00012 35.2 1.2 16 81-96 3-18 (179)
156 1nlw_A MAD protein, MAX dimeri 56.2 16 0.00054 28.4 4.8 35 408-442 46-80 (80)
157 3m48_A General control protein 56.2 15 0.00052 23.5 3.7 25 413-437 4-28 (33)
158 1jr3_A DNA polymerase III subu 56.0 6.7 0.00023 38.4 3.3 18 79-96 38-55 (373)
159 1nkp_A C-MYC, MYC proto-oncoge 55.5 21 0.0007 28.2 5.5 37 408-444 51-87 (88)
160 1sxj_B Activator 1 37 kDa subu 55.3 4.8 0.00016 38.5 2.1 21 76-96 39-59 (323)
161 3u61_B DNA polymerase accessor 55.2 5.8 0.0002 38.3 2.7 19 79-97 48-66 (324)
162 3upu_A ATP-dependent DNA helic 55.2 6 0.00021 40.7 2.9 37 56-97 27-63 (459)
163 1sxj_E Activator 1 40 kDa subu 55.1 4.2 0.00014 39.8 1.6 16 82-97 39-54 (354)
164 3cf2_A TER ATPase, transitiona 55.0 6.7 0.00023 43.7 3.4 81 46-126 200-296 (806)
165 2db3_A ATP-dependent RNA helic 54.8 5.2 0.00018 40.8 2.3 24 71-96 87-110 (434)
166 3oja_B Anopheles plasmodium-re 54.8 1.9E+02 0.0066 30.0 14.8 29 307-335 391-419 (597)
167 1kgd_A CASK, peripheral plasma 54.6 3.4 0.00012 36.6 0.8 16 81-96 7-22 (180)
168 2v1x_A ATP-dependent DNA helic 54.4 6.1 0.00021 42.3 2.9 25 70-96 52-76 (591)
169 3tau_A Guanylate kinase, GMP k 54.3 3.9 0.00013 37.2 1.2 17 80-96 9-25 (208)
170 2dgc_A Protein (GCN4); basic d 54.1 15 0.00051 27.2 4.1 30 416-445 30-59 (63)
171 3tr0_A Guanylate kinase, GMP k 54.0 3.5 0.00012 36.8 0.8 16 81-96 9-24 (205)
172 4a2p_A RIG-I, retinoic acid in 53.8 5.4 0.00018 41.3 2.3 24 71-96 16-39 (556)
173 1fuu_A Yeast initiation factor 53.6 3.4 0.00012 40.7 0.7 24 71-96 52-75 (394)
174 2qag_C Septin-7; cell cycle, c 53.3 3.8 0.00013 42.0 1.0 23 74-96 26-48 (418)
175 1hv8_A Putative ATP-dependent 53.2 5 0.00017 38.9 1.8 24 72-96 38-61 (367)
176 1w36_D RECD, exodeoxyribonucle 53.2 4.9 0.00017 43.2 1.9 18 80-97 165-182 (608)
177 3a00_A Guanylate kinase, GMP k 53.0 3.5 0.00012 36.7 0.6 15 82-96 4-18 (186)
178 1ci6_A Transcription factor AT 52.9 19 0.00065 26.6 4.6 28 418-445 25-52 (63)
179 1go4_E MAD1 (mitotic arrest de 52.8 15 0.00052 29.9 4.3 20 457-476 73-92 (100)
180 3mq7_A Bone marrow stromal ant 52.5 43 0.0015 27.8 7.0 34 410-443 72-105 (121)
181 2dr3_A UPF0273 protein PH0284; 52.2 4.9 0.00017 36.8 1.5 27 70-96 11-40 (247)
182 1qvr_A CLPB protein; coiled co 52.2 3.3 0.00011 46.4 0.3 29 70-98 182-210 (854)
183 3qh9_A Liprin-beta-2; coiled-c 52.2 70 0.0024 24.8 7.7 42 410-451 20-61 (81)
184 3e70_C DPA, signal recognition 52.0 9.1 0.00031 37.8 3.5 17 80-96 130-146 (328)
185 2dfs_A Myosin-5A; myosin-V, in 51.8 52 0.0018 37.9 10.2 38 110-147 406-444 (1080)
186 1ly1_A Polynucleotide kinase; 51.8 4.7 0.00016 34.9 1.2 15 81-95 4-18 (181)
187 3tbk_A RIG-I helicase domain; 51.6 6.1 0.00021 40.8 2.3 23 72-96 14-36 (555)
188 1qhx_A CPT, protein (chloramph 51.3 4.8 0.00017 35.0 1.2 17 80-96 4-20 (178)
189 2wq1_A General control protein 51.3 33 0.0011 21.9 4.7 26 412-437 3-28 (33)
190 1ojl_A Transcriptional regulat 51.3 6.8 0.00023 38.0 2.4 20 77-96 23-42 (304)
191 2fwr_A DNA repair protein RAD2 51.2 6 0.0002 40.5 2.1 24 72-97 103-126 (472)
192 3hws_A ATP-dependent CLP prote 50.9 4.1 0.00014 40.4 0.8 18 79-96 51-68 (363)
193 2pt7_A CAG-ALFA; ATPase, prote 50.8 6.4 0.00022 38.8 2.2 19 76-96 170-188 (330)
194 1um8_A ATP-dependent CLP prote 50.8 4.2 0.00014 40.5 0.8 18 79-96 72-89 (376)
195 1lvg_A Guanylate kinase, GMP k 50.8 3.8 0.00013 37.0 0.4 16 81-96 6-21 (198)
196 3oja_B Anopheles plasmodium-re 50.8 27 0.00091 36.8 7.2 8 364-371 464-471 (597)
197 3c3g_A Alpha/beta peptide with 50.6 34 0.0012 21.8 4.7 26 412-437 3-28 (33)
198 2gk6_A Regulator of nonsense t 50.6 5.8 0.0002 42.7 2.0 18 81-98 197-214 (624)
199 1zp6_A Hypothetical protein AT 50.2 3.9 0.00014 36.0 0.5 16 81-96 11-26 (191)
200 2qnr_A Septin-2, protein NEDD5 50.1 3.8 0.00013 39.9 0.4 24 73-96 12-35 (301)
201 1t2k_D Cyclic-AMP-dependent tr 50.0 23 0.00078 25.8 4.6 24 420-443 26-49 (61)
202 3trf_A Shikimate kinase, SK; a 49.8 5.3 0.00018 35.0 1.3 15 81-95 7-21 (185)
203 2wt7_A Proto-oncogene protein 49.6 23 0.00079 26.0 4.6 27 418-444 25-51 (63)
204 2b8t_A Thymidine kinase; deoxy 49.5 4 0.00014 38.2 0.4 19 80-98 13-31 (223)
205 3sqw_A ATP-dependent RNA helic 49.4 7.8 0.00027 41.0 2.7 26 70-95 51-76 (579)
206 1t2k_D Cyclic-AMP-dependent tr 49.1 59 0.002 23.5 6.8 33 410-442 23-55 (61)
207 1c4o_A DNA nucleotide excision 49.1 8 0.00027 42.0 2.8 46 47-98 2-47 (664)
208 1hjb_A Ccaat/enhancer binding 49.0 22 0.00075 28.2 4.6 24 421-444 41-64 (87)
209 4ag6_A VIRB4 ATPase, type IV s 49.0 4.2 0.00014 40.8 0.5 20 76-97 34-53 (392)
210 4gl2_A Interferon-induced heli 49.0 6.8 0.00023 42.3 2.2 25 71-97 16-40 (699)
211 1gu4_A CAAT/enhancer binding p 48.9 22 0.00076 27.5 4.5 29 419-447 39-67 (78)
212 1ye8_A Protein THEP1, hypothet 48.9 4.4 0.00015 36.2 0.6 15 82-96 3-17 (178)
213 3sop_A Neuronal-specific septi 48.8 4.6 0.00016 38.7 0.8 19 78-96 1-19 (270)
214 1jnm_A Proto-oncogene C-JUN; B 48.6 20 0.00068 26.3 4.1 27 418-444 24-50 (62)
215 2bni_A General control protein 48.3 26 0.00089 22.5 3.9 26 412-437 4-29 (34)
216 2w6a_A ARF GTPase-activating p 48.0 32 0.0011 25.0 4.8 26 412-437 37-62 (63)
217 2orw_A Thymidine kinase; TMTK, 48.0 3.8 0.00013 36.8 -0.0 18 81-98 5-22 (184)
218 1gm5_A RECG; helicase, replica 47.9 7.7 0.00026 43.1 2.4 39 54-96 368-406 (780)
219 2j41_A Guanylate kinase; GMP, 47.8 5 0.00017 35.7 0.8 16 81-96 8-23 (207)
220 3iij_A Coilin-interacting nucl 47.8 5.5 0.00019 34.8 1.1 16 81-96 13-28 (180)
221 4emc_A Monopolin complex subun 47.8 44 0.0015 30.2 6.9 38 410-447 21-58 (190)
222 1ypw_A Transitional endoplasmi 47.5 7.6 0.00026 43.3 2.3 52 45-96 199-255 (806)
223 1kd8_A GABH AIV, GCN4 acid bas 47.4 26 0.00088 22.8 3.8 29 412-440 4-32 (36)
224 2bdt_A BH3686; alpha-beta prot 47.3 5.2 0.00018 35.3 0.8 16 81-96 4-19 (189)
225 1rj9_A FTSY, signal recognitio 47.2 5.7 0.0002 38.8 1.1 17 80-96 103-119 (304)
226 1jnm_A Proto-oncogene C-JUN; B 47.1 60 0.002 23.6 6.5 37 408-444 21-57 (62)
227 1odf_A YGR205W, hypothetical 3 46.9 11 0.00037 36.5 3.1 36 61-96 11-48 (290)
228 2hy6_A General control protein 46.6 29 0.00099 22.3 3.9 26 412-437 4-29 (34)
229 2d7d_A Uvrabc system protein B 46.4 19 0.00066 39.0 5.3 91 46-144 4-98 (661)
230 3lfu_A DNA helicase II; SF1 he 46.4 5.4 0.00019 42.6 0.9 20 78-97 21-40 (647)
231 2ehv_A Hypothetical protein PH 46.4 5.4 0.00019 36.6 0.8 17 81-97 32-48 (251)
232 2jlq_A Serine protease subunit 46.1 6.8 0.00023 40.2 1.5 24 71-95 12-35 (451)
233 1r6b_X CLPA protein; AAA+, N-t 46.0 9.8 0.00034 41.7 2.9 29 70-98 198-226 (758)
234 3lnc_A Guanylate kinase, GMP k 46.0 6.2 0.00021 36.2 1.1 16 81-96 29-44 (231)
235 3pxi_A Negative regulator of g 45.7 13 0.00043 40.9 3.7 25 74-98 196-220 (758)
236 3uie_A Adenylyl-sulfate kinase 45.5 7.8 0.00027 34.7 1.7 18 79-96 25-42 (200)
237 3kb2_A SPBC2 prophage-derived 45.5 6.9 0.00024 33.5 1.3 16 81-96 3-18 (173)
238 1wlq_A Geminin; coiled-coil; 2 45.5 64 0.0022 25.2 6.6 28 413-440 42-69 (83)
239 3nbx_X ATPase RAVA; AAA+ ATPas 45.5 10 0.00036 39.7 2.9 24 72-97 36-59 (500)
240 2r8r_A Sensor protein; KDPD, P 45.4 5.4 0.00019 37.5 0.6 19 80-98 7-25 (228)
241 3vmx_A Voltage-gated hydrogen 45.4 62 0.0021 22.6 5.8 36 408-443 3-38 (48)
242 3pxi_A Negative regulator of g 45.3 12 0.00041 41.1 3.5 37 59-96 496-538 (758)
243 1znw_A Guanylate kinase, GMP k 45.2 5.9 0.0002 35.8 0.8 16 81-96 22-37 (207)
244 1wp9_A ATP-dependent RNA helic 45.1 7.9 0.00027 38.7 1.8 25 71-98 18-42 (494)
245 2px0_A Flagellar biosynthesis 44.4 9.7 0.00033 36.9 2.3 18 81-98 107-124 (296)
246 1e9r_A Conjugal transfer prote 44.3 4.8 0.00017 40.9 0.1 18 79-96 53-70 (437)
247 3e1s_A Exodeoxyribonuclease V, 44.3 7.4 0.00025 41.6 1.6 19 80-98 205-223 (574)
248 3b9q_A Chloroplast SRP recepto 44.3 6 0.00021 38.6 0.8 16 81-96 102-117 (302)
249 1kht_A Adenylate kinase; phosp 44.3 7.4 0.00025 34.0 1.3 15 81-95 5-19 (192)
250 2ykg_A Probable ATP-dependent 44.2 10 0.00035 40.8 2.7 23 72-96 23-45 (696)
251 2yhs_A FTSY, cell division pro 44.2 12 0.00042 39.2 3.2 16 81-96 295-310 (503)
252 1uo4_A General control protein 44.1 33 0.0011 22.1 3.9 26 412-437 4-29 (34)
253 1kag_A SKI, shikimate kinase I 44.1 6.8 0.00023 33.8 1.0 16 81-96 6-21 (173)
254 3vaa_A Shikimate kinase, SK; s 43.8 7.3 0.00025 34.9 1.2 16 81-96 27-42 (199)
255 1ci6_A Transcription factor AT 43.5 60 0.002 23.8 6.0 24 414-437 35-58 (63)
256 2ze6_A Isopentenyl transferase 43.5 7.4 0.00025 36.6 1.2 15 81-95 3-17 (253)
257 3mq7_A Bone marrow stromal ant 43.4 1.4E+02 0.0048 24.7 8.9 30 411-440 80-109 (121)
258 2xzl_A ATP-dependent helicase 43.4 8.8 0.0003 42.8 2.0 18 81-98 377-394 (802)
259 1z6g_A Guanylate kinase; struc 43.2 5.9 0.0002 36.4 0.5 15 82-96 26-40 (218)
260 2gza_A Type IV secretion syste 43.1 5.3 0.00018 39.9 0.2 19 76-96 174-192 (361)
261 1uii_A Geminin; human, DNA rep 43.1 85 0.0029 24.5 7.0 32 411-442 48-79 (83)
262 1sxj_A Activator 1 95 kDa subu 43.0 6.9 0.00024 41.0 1.0 17 80-96 78-94 (516)
263 1lkx_A Myosin IE heavy chain; 42.9 14 0.00046 40.6 3.3 21 76-96 91-111 (697)
264 3ghg_A Fibrinogen alpha chain; 42.8 62 0.0021 33.8 8.0 14 360-373 61-74 (562)
265 1xx6_A Thymidine kinase; NESG, 42.6 5.3 0.00018 36.3 0.0 18 81-98 10-27 (191)
266 2wt7_A Proto-oncogene protein 42.5 63 0.0021 23.6 6.0 35 409-443 23-57 (63)
267 1knq_A Gluconate kinase; ALFA/ 42.4 6.9 0.00024 34.0 0.8 16 81-96 10-25 (175)
268 1qvr_A CLPB protein; coiled co 42.2 14 0.00049 41.2 3.5 17 80-96 589-605 (854)
269 3nmd_A CGMP dependent protein 42.2 1.1E+02 0.0036 23.3 7.2 34 411-444 35-68 (72)
270 1r6b_X CLPA protein; AAA+, N-t 42.1 15 0.00052 40.2 3.7 17 80-96 489-505 (758)
271 3cvf_A Homer-3, homer protein 41.7 23 0.00077 27.6 3.5 33 412-444 23-55 (79)
272 1v5w_A DMC1, meiotic recombina 41.6 11 0.00039 37.2 2.3 29 69-97 109-140 (343)
273 2wjy_A Regulator of nonsense t 41.5 9.7 0.00033 42.4 2.0 18 81-98 373-390 (800)
274 1w9i_A Myosin II heavy chain; 41.1 15 0.00051 40.7 3.3 21 76-96 169-189 (770)
275 2qen_A Walker-type ATPase; unk 41.0 12 0.0004 36.0 2.3 17 80-96 32-48 (350)
276 2i3b_A HCR-ntpase, human cance 40.8 7 0.00024 35.3 0.6 16 81-96 3-18 (189)
277 4a4z_A Antiviral helicase SKI2 40.7 12 0.0004 42.8 2.5 32 54-95 39-70 (997)
278 2qor_A Guanylate kinase; phosp 40.7 8.1 0.00028 34.7 1.0 16 81-96 14-29 (204)
279 2rhm_A Putative kinase; P-loop 40.6 8.1 0.00028 33.8 1.0 17 80-96 6-22 (193)
280 3cm0_A Adenylate kinase; ATP-b 40.5 8.9 0.0003 33.5 1.2 16 81-96 6-21 (186)
281 1tev_A UMP-CMP kinase; ploop, 40.5 9 0.00031 33.5 1.2 15 81-95 5-19 (196)
282 1t6f_A Geminin; coiled-coil, c 40.3 66 0.0023 20.9 4.9 23 414-436 12-34 (37)
283 2v26_A Myosin VI; calmodulin-b 40.3 16 0.00053 40.7 3.4 21 76-96 137-157 (784)
284 3kta_A Chromosome segregation 40.1 7.1 0.00024 34.1 0.5 16 81-96 28-43 (182)
285 3hnw_A Uncharacterized protein 40.0 88 0.003 26.7 7.5 7 303-309 17-23 (138)
286 1wlq_A Geminin; coiled-coil; 2 40.0 1E+02 0.0035 24.0 7.0 35 411-445 33-67 (83)
287 2dgc_A Protein (GCN4); basic d 39.9 43 0.0015 24.7 4.7 33 408-440 29-61 (63)
288 1y63_A LMAJ004144AAA protein; 39.8 8.7 0.0003 33.9 1.1 15 81-95 12-26 (184)
289 1uaa_A REP helicase, protein ( 39.5 8.5 0.00029 41.6 1.1 20 79-98 15-34 (673)
290 1f2t_A RAD50 ABC-ATPase; DNA d 39.3 9.1 0.00031 32.9 1.1 15 82-96 26-40 (149)
291 1moz_A ARL1, ADP-ribosylation 39.2 12 0.0004 32.2 1.8 27 70-96 8-35 (183)
292 3kl4_A SRP54, signal recogniti 39.1 19 0.00066 37.0 3.6 19 80-98 98-116 (433)
293 1deb_A APC protein, adenomatou 39.0 62 0.0021 22.7 5.0 22 420-441 7-28 (54)
294 1e6c_A Shikimate kinase; phosp 38.9 9.2 0.00032 32.9 1.0 16 81-96 4-19 (173)
295 1pzn_A RAD51, DNA repair and r 38.8 12 0.00042 37.0 2.1 29 68-96 117-148 (349)
296 1oyw_A RECQ helicase, ATP-depe 38.8 7.6 0.00026 40.8 0.5 24 71-96 34-57 (523)
297 2v6i_A RNA helicase; membrane, 38.7 11 0.00036 38.5 1.6 16 81-96 4-19 (431)
298 4a2q_A RIG-I, retinoic acid in 38.7 12 0.00043 41.2 2.3 24 71-96 257-280 (797)
299 1s96_A Guanylate kinase, GMP k 38.6 8.4 0.00029 35.6 0.8 16 81-96 18-33 (219)
300 2og2_A Putative signal recogni 38.5 8.3 0.00028 38.7 0.8 16 81-96 159-174 (359)
301 1kk8_A Myosin heavy chain, str 38.5 16 0.00056 40.8 3.2 21 76-96 166-186 (837)
302 1i84_S Smooth muscle myosin he 38.5 17 0.00059 42.2 3.5 34 62-95 152-185 (1184)
303 2bbw_A Adenylate kinase 4, AK4 38.4 8.6 0.00029 35.7 0.8 17 80-96 28-44 (246)
304 4db1_A Myosin-7; S1DC, cardiac 38.2 18 0.0006 40.2 3.4 21 76-96 168-188 (783)
305 4eun_A Thermoresistant glucoki 38.2 8.7 0.0003 34.4 0.8 16 81-96 31-46 (200)
306 2fna_A Conserved hypothetical 38.2 9.8 0.00033 36.6 1.2 17 80-96 31-47 (357)
307 1w7j_A Myosin VA; motor protei 38.1 18 0.0006 40.3 3.4 21 76-96 153-173 (795)
308 4a2w_A RIG-I, retinoic acid in 38.0 11 0.00039 42.5 1.9 25 71-97 257-281 (936)
309 1uf9_A TT1252 protein; P-loop, 37.8 11 0.00038 33.2 1.4 20 76-95 5-24 (203)
310 1g8x_A Myosin II heavy chain f 37.6 16 0.00056 41.7 3.1 21 76-96 169-189 (1010)
311 2vli_A Antibiotic resistance p 37.6 11 0.00038 32.7 1.4 15 81-95 7-21 (183)
312 1nks_A Adenylate kinase; therm 37.5 8.9 0.0003 33.4 0.7 15 81-95 3-17 (194)
313 2oca_A DAR protein, ATP-depend 37.5 15 0.0005 37.9 2.5 35 54-98 113-147 (510)
314 3t5d_A Septin-7; GTP-binding p 37.5 8.7 0.0003 36.4 0.7 21 76-96 5-25 (274)
315 2ycu_A Non muscle myosin 2C, a 37.3 18 0.0006 41.4 3.2 21 76-96 143-163 (995)
316 2r2v_A GCN4 leucine zipper; co 37.3 53 0.0018 21.1 4.1 26 412-437 4-29 (34)
317 2z43_A DNA repair and recombin 37.2 12 0.00042 36.4 1.8 30 68-97 93-125 (324)
318 2iyv_A Shikimate kinase, SK; t 37.2 10 0.00035 33.1 1.1 15 81-95 4-18 (184)
319 2oxj_A Hybrid alpha/beta pepti 37.2 42 0.0014 21.5 3.6 27 418-444 3-29 (34)
320 1svm_A Large T antigen; AAA+ f 37.2 17 0.00058 36.6 2.8 17 80-96 170-186 (377)
321 3tif_A Uncharacterized ABC tra 37.1 9.3 0.00032 35.6 0.8 15 82-96 34-48 (235)
322 3asz_A Uridine kinase; cytidin 37.1 8.5 0.00029 34.5 0.5 16 81-96 8-23 (211)
323 3t61_A Gluconokinase; PSI-biol 37.1 10 0.00035 33.8 1.0 17 80-96 19-35 (202)
324 1j8m_F SRP54, signal recogniti 37.1 29 0.00099 33.5 4.4 17 81-97 100-116 (297)
325 1htw_A HI0065; nucleotide-bind 37.0 9.5 0.00033 33.3 0.8 17 81-97 35-51 (158)
326 1kd8_B GABH BLL, GCN4 acid bas 36.9 36 0.0012 22.1 3.3 29 417-445 2-30 (36)
327 2yvu_A Probable adenylyl-sulfa 36.8 13 0.00043 32.7 1.6 17 80-96 14-30 (186)
328 2i1q_A DNA repair and recombin 36.7 16 0.00055 35.4 2.5 30 68-97 84-116 (322)
329 1vma_A Cell division protein F 36.7 9.4 0.00032 37.3 0.8 18 80-97 105-122 (306)
330 1via_A Shikimate kinase; struc 36.7 10 0.00035 32.9 1.0 15 81-95 6-20 (175)
331 1w4r_A Thymidine kinase; type 36.6 9.8 0.00033 34.8 0.8 18 78-95 19-36 (195)
332 2oa5_A Hypothetical protein BQ 36.5 31 0.0011 28.4 3.7 25 417-441 9-33 (110)
333 2eyq_A TRCF, transcription-rep 36.5 18 0.00062 41.9 3.3 24 72-95 617-640 (1151)
334 3oja_A Leucine-rich immune mol 36.4 3.4E+02 0.012 27.5 12.8 29 415-443 434-462 (487)
335 1yks_A Genome polyprotein [con 36.2 12 0.00041 38.3 1.5 21 74-96 5-25 (440)
336 2oqq_A Transcription factor HY 36.2 99 0.0034 20.9 6.4 29 411-439 12-40 (42)
337 2z83_A Helicase/nucleoside tri 36.1 13 0.00044 38.2 1.8 16 81-96 23-38 (459)
338 2r2a_A Uncharacterized protein 36.1 11 0.00037 34.4 1.0 17 81-97 7-23 (199)
339 2zj8_A DNA helicase, putative 36.0 9.8 0.00033 41.5 0.9 20 75-96 37-56 (720)
340 4dzn_A Coiled-coil peptide CC- 35.8 77 0.0026 19.5 4.8 22 421-442 7-28 (33)
341 2bwj_A Adenylate kinase 5; pho 35.7 11 0.00037 33.2 1.0 16 81-96 14-29 (199)
342 2pt5_A Shikimate kinase, SK; a 35.6 12 0.00041 32.0 1.2 15 81-95 2-16 (168)
343 3dm5_A SRP54, signal recogniti 35.5 25 0.00086 36.2 3.8 35 445-479 396-430 (443)
344 2eqb_B RAB guanine nucleotide 35.5 45 0.0015 26.9 4.5 61 410-470 27-94 (97)
345 2akf_A Coronin-1A; coiled coil 35.4 56 0.0019 20.2 3.8 26 414-439 4-29 (32)
346 3cve_A Homer protein homolog 1 35.3 1.1E+02 0.0038 23.2 6.4 31 413-443 18-48 (72)
347 4anj_A Unconventional myosin-V 35.1 21 0.0007 41.0 3.4 21 76-96 141-161 (1052)
348 3fb4_A Adenylate kinase; psych 35.1 11 0.00039 33.8 1.1 15 82-96 3-17 (216)
349 2zr9_A Protein RECA, recombina 35.1 14 0.00048 36.7 1.8 30 68-97 46-79 (349)
350 1a5t_A Delta prime, HOLB; zinc 35.0 21 0.00071 34.9 3.0 34 59-96 7-41 (334)
351 1ukz_A Uridylate kinase; trans 34.9 12 0.00043 33.1 1.3 17 80-96 16-32 (203)
352 3a4m_A L-seryl-tRNA(SEC) kinas 34.8 12 0.00042 35.1 1.2 17 80-96 5-21 (260)
353 2zts_A Putative uncharacterize 34.8 13 0.00044 33.9 1.4 28 69-96 17-47 (251)
354 3ney_A 55 kDa erythrocyte memb 34.7 11 0.00037 34.5 0.8 16 81-96 21-36 (197)
355 1gku_B Reverse gyrase, TOP-RG; 34.7 17 0.00057 41.8 2.5 23 70-94 64-86 (1054)
356 3rc3_A ATP-dependent RNA helic 34.5 11 0.00038 41.1 1.0 47 74-126 152-202 (677)
357 3s4r_A Vimentin; alpha-helix, 34.5 1.1E+02 0.0036 24.3 6.6 19 424-442 24-42 (93)
358 3crm_A TRNA delta(2)-isopenten 34.4 14 0.00049 36.4 1.7 16 80-95 6-21 (323)
359 3m48_A General control protein 34.4 42 0.0014 21.5 3.2 27 418-444 2-28 (33)
360 1go4_E MAD1 (mitotic arrest de 34.3 1.3E+02 0.0046 24.2 7.2 25 418-442 14-38 (100)
361 1cr0_A DNA primase/helicase; R 34.2 11 0.00038 35.9 0.9 28 70-97 24-53 (296)
362 1ex7_A Guanylate kinase; subst 34.1 10 0.00035 34.2 0.6 15 82-96 4-18 (186)
363 2ga8_A Hypothetical 39.9 kDa p 34.1 28 0.00097 34.8 3.8 21 76-96 21-41 (359)
364 1qf9_A UMP/CMP kinase, protein 34.0 11 0.00038 32.8 0.8 16 81-96 8-23 (194)
365 3sr0_A Adenylate kinase; phosp 34.0 12 0.00042 34.2 1.1 35 82-122 3-37 (206)
366 1aky_A Adenylate kinase; ATP:A 33.9 12 0.00041 33.9 1.0 15 81-95 6-20 (220)
367 3umf_A Adenylate kinase; rossm 33.9 12 0.00041 34.7 1.0 36 81-122 31-66 (217)
368 1p9i_A Cortexillin I/GCN4 hybr 33.8 43 0.0015 20.3 3.1 20 423-442 6-25 (31)
369 1xjc_A MOBB protein homolog; s 33.8 11 0.00039 33.5 0.8 17 81-97 6-22 (169)
370 2c95_A Adenylate kinase 1; tra 33.7 12 0.00041 32.8 1.0 16 81-96 11-26 (196)
371 2qag_A Septin-2, protein NEDD5 33.6 11 0.00039 37.5 0.8 23 74-96 32-54 (361)
372 1dip_A Delta-sleep-inducing pe 33.5 51 0.0017 25.1 4.1 27 413-439 19-45 (78)
373 1zd8_A GTP:AMP phosphotransfer 33.4 11 0.00039 34.3 0.7 16 81-96 9-24 (227)
374 3dl0_A Adenylate kinase; phosp 33.4 13 0.00043 33.5 1.1 15 82-96 3-17 (216)
375 2va8_A SSO2462, SKI2-type heli 33.4 15 0.00052 39.8 1.9 31 57-96 33-63 (715)
376 2qmh_A HPR kinase/phosphorylas 33.3 14 0.00048 34.1 1.3 21 76-96 31-51 (205)
377 3m6a_A ATP-dependent protease 33.3 12 0.0004 39.7 0.9 18 79-96 108-125 (543)
378 1gk7_A Vimentin; intermediate 33.1 94 0.0032 20.6 5.1 32 410-441 7-38 (39)
379 2cdn_A Adenylate kinase; phosp 33.1 16 0.00054 32.5 1.7 20 77-96 18-37 (201)
380 2wvr_A Geminin; DNA replicatio 33.0 1.1E+02 0.0038 27.9 7.1 35 409-443 115-149 (209)
381 2xau_A PRE-mRNA-splicing facto 32.9 13 0.00044 41.2 1.2 15 81-95 111-125 (773)
382 3azd_A Short alpha-tropomyosin 32.8 16 0.00056 24.1 1.2 29 417-445 5-33 (37)
383 3aez_A Pantothenate kinase; tr 32.5 17 0.00057 35.6 1.8 17 80-96 91-107 (312)
384 2xgj_A ATP-dependent RNA helic 32.2 16 0.00054 41.8 1.8 33 54-96 86-118 (1010)
385 2pbr_A DTMP kinase, thymidylat 32.2 14 0.00046 32.3 1.0 14 82-95 3-16 (195)
386 1jjv_A Dephospho-COA kinase; P 32.0 14 0.00047 33.0 1.0 16 81-96 4-19 (206)
387 2zxx_A Geminin; coiled-coil, c 31.9 1.1E+02 0.0039 23.6 6.1 28 413-440 38-65 (79)
388 3ra3_B P2F; coiled coil domain 31.8 58 0.002 19.3 3.3 18 427-444 4-21 (28)
389 3a8t_A Adenylate isopentenyltr 31.8 15 0.00052 36.5 1.4 15 81-95 42-56 (339)
390 2plr_A DTMP kinase, probable t 31.7 14 0.00048 32.7 1.0 16 81-96 6-21 (213)
391 2jaq_A Deoxyguanosine kinase; 31.6 14 0.00048 32.5 1.0 15 82-96 3-17 (205)
392 2iut_A DNA translocase FTSK; n 31.6 12 0.0004 40.1 0.6 19 80-98 215-233 (574)
393 2gno_A DNA polymerase III, gam 31.2 20 0.00069 34.8 2.2 25 72-96 11-35 (305)
394 1zuh_A Shikimate kinase; alpha 31.1 16 0.00054 31.4 1.3 15 81-95 9-23 (168)
395 2p6r_A Afuhel308 helicase; pro 31.0 13 0.00045 40.3 0.8 31 56-96 27-57 (702)
396 2yy0_A C-MYC-binding protein; 31.0 73 0.0025 22.6 4.5 20 412-431 29-48 (53)
397 2a01_A Apolipoprotein A-I; fou 31.0 2.7E+02 0.0093 25.7 10.0 31 414-444 108-139 (243)
398 1ak2_A Adenylate kinase isoenz 31.0 14 0.00049 33.8 1.0 17 80-96 17-33 (233)
399 2v9p_A Replication protein E1; 30.9 14 0.00047 36.2 0.9 16 81-96 128-143 (305)
400 1c9k_A COBU, adenosylcobinamid 30.8 14 0.00048 33.3 0.9 14 82-95 2-15 (180)
401 1sq5_A Pantothenate kinase; P- 30.7 26 0.00089 33.8 2.9 17 80-96 81-97 (308)
402 2ged_A SR-beta, signal recogni 30.6 13 0.00044 32.4 0.6 19 78-96 47-65 (193)
403 2ius_A DNA translocase FTSK; n 30.4 13 0.00043 39.2 0.6 17 81-97 169-185 (512)
404 2onk_A Molybdate/tungstate ABC 30.3 14 0.00048 34.6 0.8 16 81-96 26-41 (240)
405 2cbz_A Multidrug resistance-as 30.3 14 0.00048 34.4 0.8 15 82-96 34-48 (237)
406 3c3f_A Alpha/beta peptide with 30.3 57 0.002 20.9 3.3 27 418-444 3-29 (34)
407 3k1j_A LON protease, ATP-depen 30.2 21 0.00073 38.0 2.3 22 73-96 56-77 (604)
408 3foz_A TRNA delta(2)-isopenten 30.2 17 0.00057 35.9 1.3 17 80-96 11-27 (316)
409 3hr8_A Protein RECA; alpha and 30.2 18 0.00063 36.1 1.7 30 68-97 46-79 (356)
410 2pcj_A ABC transporter, lipopr 30.2 13 0.00043 34.4 0.5 15 82-96 33-47 (224)
411 3o0z_A RHO-associated protein 30.2 2.9E+02 0.0098 24.4 10.6 25 415-439 47-71 (168)
412 2if2_A Dephospho-COA kinase; a 30.1 14 0.00048 32.8 0.7 16 81-96 3-18 (204)
413 3qks_A DNA double-strand break 30.0 16 0.00053 33.1 1.1 16 81-96 25-40 (203)
414 3crv_A XPD/RAD3 related DNA he 29.9 23 0.00078 37.3 2.5 35 57-97 6-40 (551)
415 4a15_A XPD helicase, ATP-depen 29.9 24 0.00083 37.9 2.7 38 53-96 2-39 (620)
416 1zak_A Adenylate kinase; ATP:A 29.8 14 0.00049 33.4 0.8 16 81-96 7-22 (222)
417 2wuj_A Septum site-determining 29.8 69 0.0024 23.0 4.3 22 422-443 33-54 (57)
418 1cke_A CK, MSSA, protein (cyti 29.7 17 0.00058 32.8 1.2 16 81-96 7-22 (227)
419 3l9o_A ATP-dependent RNA helic 29.7 20 0.00068 41.4 2.1 22 72-95 194-215 (1108)
420 2ce2_X GTPase HRAS; signaling 29.7 12 0.00043 31.0 0.3 16 81-96 5-20 (166)
421 3c3g_A Alpha/beta peptide with 29.6 81 0.0028 20.1 3.9 27 418-444 2-28 (33)
422 3qf7_A RAD50; ABC-ATPase, ATPa 29.6 16 0.00053 36.5 1.1 14 83-96 27-40 (365)
423 1g6h_A High-affinity branched- 29.5 15 0.0005 34.7 0.8 15 82-96 36-50 (257)
424 1wt6_A Myotonin-protein kinase 29.5 1E+02 0.0036 23.8 5.4 34 414-447 43-76 (81)
425 2z0h_A DTMP kinase, thymidylat 29.4 16 0.00056 31.9 1.1 15 82-96 3-17 (197)
426 3tnu_B Keratin, type II cytosk 29.4 1.1E+02 0.0036 25.7 6.2 28 414-441 41-68 (129)
427 3vkg_A Dynein heavy chain, cyt 29.3 2.3E+02 0.0079 36.6 11.5 100 368-479 2012-2121(3245)
428 1a93_B MAX protein, coiled coi 29.3 1.2E+02 0.004 19.6 4.7 21 422-442 13-33 (34)
429 1ji0_A ABC transporter; ATP bi 29.2 15 0.00051 34.3 0.8 15 82-96 35-49 (240)
430 3gfo_A Cobalt import ATP-bindi 29.2 15 0.00051 35.3 0.8 14 83-96 38-51 (275)
431 1np6_A Molybdopterin-guanine d 29.2 15 0.00051 32.7 0.8 16 81-96 8-23 (174)
432 1a93_A Coiled coil, LZ, MYC pr 29.1 91 0.0031 20.1 4.2 27 416-442 7-33 (34)
433 4ddu_A Reverse gyrase; topoiso 29.0 23 0.0008 40.8 2.5 24 70-95 86-109 (1104)
434 1zu4_A FTSY; GTPase, signal re 28.9 15 0.00052 36.0 0.8 17 81-97 107-123 (320)
435 2vhj_A Ntpase P4, P4; non- hyd 28.9 19 0.00066 35.6 1.6 18 81-98 125-142 (331)
436 1pjr_A PCRA; DNA repair, DNA r 28.8 14 0.00048 40.5 0.6 20 79-98 24-43 (724)
437 2dyk_A GTP-binding protein; GT 28.8 14 0.00049 30.7 0.6 16 81-96 3-18 (161)
438 1sgw_A Putative ABC transporte 28.8 14 0.00049 33.9 0.6 14 83-96 39-52 (214)
439 3s84_A Apolipoprotein A-IV; fo 28.7 3.8E+02 0.013 25.3 11.3 111 359-478 62-188 (273)
440 3m9b_A Proteasome-associated A 28.6 50 0.0017 31.2 4.3 37 410-446 62-98 (251)
441 1b0u_A Histidine permease; ABC 28.6 15 0.00053 34.7 0.8 15 82-96 35-49 (262)
442 2vl7_A XPD; helicase, unknown 28.6 27 0.00093 36.6 2.8 38 54-97 7-44 (540)
443 1nlf_A Regulatory protein REPA 28.6 14 0.00049 34.9 0.5 17 81-97 32-48 (279)
444 3exa_A TRNA delta(2)-isopenten 28.5 18 0.00063 35.6 1.3 16 81-96 5-20 (322)
445 2ff7_A Alpha-hemolysin translo 28.5 16 0.00054 34.3 0.8 15 82-96 38-52 (247)
446 2ghi_A Transport protein; mult 28.5 16 0.00054 34.6 0.8 15 82-96 49-63 (260)
447 1mv5_A LMRA, multidrug resista 28.4 16 0.00054 34.2 0.8 15 82-96 31-45 (243)
448 1e4v_A Adenylate kinase; trans 28.3 16 0.00054 33.0 0.8 15 82-96 3-17 (214)
449 1g41_A Heat shock protein HSLU 28.3 17 0.00057 37.6 1.0 17 80-96 51-67 (444)
450 2yz2_A Putative ABC transporte 28.3 16 0.00054 34.7 0.8 15 82-96 36-50 (266)
451 3tlx_A Adenylate kinase 2; str 27.9 18 0.0006 33.7 1.0 17 79-95 29-45 (243)
452 3bs4_A Uncharacterized protein 27.9 45 0.0015 31.7 4.0 27 69-96 8-37 (260)
453 3o8b_A HCV NS3 protease/helica 27.8 21 0.00072 38.8 1.8 17 81-97 234-250 (666)
454 2hy6_A General control protein 27.7 52 0.0018 21.1 2.8 28 417-444 2-29 (34)
455 2wvr_A Geminin; DNA replicatio 27.6 1.3E+02 0.0045 27.4 6.6 36 410-445 109-144 (209)
456 3tqc_A Pantothenate kinase; bi 27.5 27 0.00093 34.3 2.4 16 81-96 94-109 (321)
457 1ltq_A Polynucleotide kinase; 27.5 19 0.00066 34.1 1.2 17 80-96 3-19 (301)
458 2pze_A Cystic fibrosis transme 27.4 17 0.00058 33.6 0.8 15 82-96 37-51 (229)
459 2olj_A Amino acid ABC transpor 27.3 17 0.00057 34.6 0.8 15 82-96 53-67 (263)
460 2pez_A Bifunctional 3'-phospho 27.1 22 0.00076 30.8 1.5 16 81-96 7-22 (179)
461 1z2a_A RAS-related protein RAB 27.1 16 0.00056 30.6 0.6 17 80-96 6-22 (168)
462 3be4_A Adenylate kinase; malar 27.1 17 0.00058 32.9 0.7 15 81-95 7-21 (217)
463 3d3q_A TRNA delta(2)-isopenten 27.1 20 0.00067 35.7 1.3 15 81-95 9-23 (340)
464 4g1u_C Hemin import ATP-bindin 27.0 17 0.00058 34.6 0.8 14 83-96 41-54 (266)
465 3lda_A DNA repair protein RAD5 26.9 23 0.00079 35.9 1.8 30 68-97 164-196 (400)
466 1vpl_A ABC transporter, ATP-bi 26.9 17 0.00059 34.3 0.8 15 82-96 44-58 (256)
467 2jeo_A Uridine-cytidine kinase 26.9 17 0.0006 33.6 0.8 15 82-96 28-42 (245)
468 2nq2_C Hypothetical ABC transp 26.8 18 0.0006 34.2 0.8 15 82-96 34-48 (253)
469 2wwf_A Thymidilate kinase, put 26.8 17 0.0006 32.2 0.8 16 81-96 12-27 (212)
470 3p32_A Probable GTPase RV1496/ 26.8 38 0.0013 33.4 3.3 30 67-96 65-96 (355)
471 2xb4_A Adenylate kinase; ATP-b 26.8 19 0.00064 32.8 1.0 15 82-96 3-17 (223)
472 3nmd_A CGMP dependent protein 26.7 2.1E+02 0.0071 21.7 7.4 12 418-429 49-60 (72)
473 2yyz_A Sugar ABC transporter, 26.7 17 0.0006 36.3 0.8 15 82-96 32-46 (359)
474 2v54_A DTMP kinase, thymidylat 26.5 19 0.00066 31.7 1.0 16 81-96 6-21 (204)
475 2qt1_A Nicotinamide riboside k 26.5 19 0.00065 32.1 1.0 16 81-96 23-38 (207)
476 3fvq_A Fe(3+) IONS import ATP- 26.5 16 0.00055 36.6 0.5 15 82-96 33-47 (359)
477 3aei_A Prefoldin beta subunit 26.5 2.2E+02 0.0075 21.8 6.8 15 380-394 27-41 (99)
478 2v3c_C SRP54, signal recogniti 26.4 22 0.00075 36.5 1.5 18 81-98 101-118 (432)
479 2ixe_A Antigen peptide transpo 26.3 18 0.00062 34.5 0.8 15 82-96 48-62 (271)
480 1z47_A CYSA, putative ABC-tran 26.3 18 0.00062 36.1 0.8 15 82-96 44-58 (355)
481 2zu0_C Probable ATP-dependent 26.2 18 0.00062 34.3 0.8 15 82-96 49-63 (267)
482 1vht_A Dephospho-COA kinase; s 26.1 21 0.00073 32.1 1.2 16 80-95 5-20 (218)
483 2d2e_A SUFC protein; ABC-ATPas 26.1 18 0.00063 33.9 0.8 15 82-96 32-46 (250)
484 3rlf_A Maltose/maltodextrin im 26.1 18 0.00062 36.5 0.8 15 82-96 32-46 (381)
485 2ihy_A ABC transporter, ATP-bi 26.1 18 0.00062 34.7 0.8 15 82-96 50-64 (279)
486 2f9l_A RAB11B, member RAS onco 26.0 20 0.00067 31.6 1.0 17 80-96 6-22 (199)
487 2qi9_C Vitamin B12 import ATP- 25.9 19 0.00063 34.0 0.8 15 82-96 29-43 (249)
488 1zj6_A ADP-ribosylation factor 25.8 34 0.0012 29.5 2.5 23 74-96 11-33 (187)
489 1g29_1 MALK, maltose transport 25.8 19 0.00063 36.3 0.8 15 82-96 32-46 (372)
490 2it1_A 362AA long hypothetical 25.8 18 0.00063 36.2 0.8 15 82-96 32-46 (362)
491 2whx_A Serine protease/ntpase/ 25.6 23 0.00078 38.1 1.5 24 71-96 180-203 (618)
492 2grj_A Dephospho-COA kinase; T 25.6 23 0.00079 31.8 1.4 17 79-95 12-28 (192)
493 1u94_A RECA protein, recombina 25.5 32 0.0011 34.2 2.6 30 68-97 48-81 (356)
494 2pjz_A Hypothetical protein ST 25.4 19 0.00065 34.2 0.8 16 81-96 32-47 (263)
495 1hjb_A Ccaat/enhancer binding 25.3 1.4E+02 0.0049 23.4 5.8 32 410-441 44-75 (87)
496 1m7g_A Adenylylsulfate kinase; 25.3 23 0.00078 31.8 1.3 17 80-96 26-42 (211)
497 4e61_A Protein BIM1; EB1-like 25.3 96 0.0033 25.4 4.8 23 411-433 20-42 (106)
498 3s4r_A Vimentin; alpha-helix, 25.2 2.5E+02 0.0086 22.1 10.3 30 414-443 54-83 (93)
499 1nrj_B SR-beta, signal recogni 25.2 22 0.00075 31.6 1.1 21 76-96 9-29 (218)
500 1v43_A Sugar-binding transport 24.8 20 0.00067 36.1 0.8 16 81-96 39-54 (372)
No 1
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=100.00 E-value=4.5e-95 Score=742.72 Aligned_cols=338 Identities=47% Similarity=0.737 Sum_probs=313.0
Q ss_pred CCeEEEEEeCCCCccccccCCCceEEEecCCceEEEeCCCCcceeEeecEEecCCCchHHHHHHHHHHHHHHhhcCcceE
Q 047385 2 SNITVCARFRPLSSKERSNHGDSVCIHGIDNESFIFKDDKEENFKFGFDRVFYEKSEQAEVFEFLALPIIRDAFNGMNGT 81 (483)
Q Consensus 2 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~t 81 (483)
++|+|+|||||++..|...+ ...|+...++.++.+. .....+.|+||+||+++++|++||+.++.|+|+++++|||+|
T Consensus 6 ~~i~V~vRvRP~~~~E~~~~-~~~~v~~~~~~~~~~~-~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~t 83 (355)
T 1goj_A 6 NSIKVVARFRPQNRVEIESG-GQPIVTFQGPDTCTVD-SKEAQGSFTFDRVFDMSCKQSDIFDFSIKPTVDDILNGYNGT 83 (355)
T ss_dssp CBCEEEEEECCCCHHHHTTT-CCBCEEECSTTEEEEC-STTCCEEEECSEEECTTCCHHHHHHHHTHHHHHHHTTTCCEE
T ss_pred CCeEEEEECCCCChHHhhcC-CceEEEEcCCCeEEEc-cCCCccEEeeCeEECCCCccHHHHHHHHHHHHHHHhCCCcce
Confidence 68999999999999998654 3456666666665554 345678999999999999999999999999999999999999
Q ss_pred EEeeCCCCCCccceecCCCCCCccccccCchhhhHHHHHHhhhcCCCCcEEEEEEeEEEEecceeecccCCCCCcceeee
Q 047385 82 VITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTVDELFDCMKSSDASVKFTIKLSMVEIYMEKVRDLFDLSRDNIQIKE 161 (483)
Q Consensus 82 i~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyne~v~DLL~~~~~~l~i~e 161 (483)
|||||||||||||||+|++.. +++++|||||++++||+.+.......+|.|++||+|||||+|+|||++....+.+++
T Consensus 84 ifAYGqTGSGKTyTm~G~~~~--~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~l~i~e 161 (355)
T 1goj_A 84 VFAYGQTGAGKSYTMMGTSID--DPDGRGVIPRIVEQIFTSILSSAANIEYTVRVSYMEIYMERIRDLLAPQNDNLPVHE 161 (355)
T ss_dssp EEEECSTTSSHHHHHTBSCTT--STTTBCHHHHHHHHHHHHHHTSCTTEEEEEEEEEEEEETTEEEETTSTTCCSCCEEE
T ss_pred EEEECCCCCCcceEeecCCCC--CcccCCchHHHHHHHHHHHHhcccCceEEEEEEEEEEECCEEEEcccCccCCceeEE
Confidence 999999999999999996532 346789999999999999988777889999999999999999999999888999999
Q ss_pred ccCCceEecCcEEEEecCHHHHHHHHHhhhhccCcccccCCCCCCCceEEEEEEEEEeecccceeEeeeeeeeeCCCCcc
Q 047385 162 SRVQGILLSGVTEIYVFNSAEALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQELTKEKRVKAGKLLLVDLAGSEK 241 (483)
Q Consensus 162 ~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~skL~~VDLAGsEr 241 (483)
++.++++|.|++++.|.|++|++++|..|.++|++++|.||..|||||+||+|+|.+..........|+|+|||||||||
T Consensus 162 ~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~skL~lVDLAGSEr 241 (355)
T 1goj_A 162 EKNRGVYVKGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVETGSAKSGQLFLVDLAGSEK 241 (355)
T ss_dssp ETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEEEEEEEEEETTTTEEEEEEEEEEECCCCSC
T ss_pred cCCCCEeecCCEEEeCCCHHHHHHHHHHHHhhcCcccccCCCCCCCceEEEEEEEEEeccCCCceeeeEEEEEECCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999988777788899999999999999
Q ss_pred ccccCCchhhHHHHHHhhhhHHHHHHHHHHhccCCCCCCCCccCCCcccchhhhhccCCCcceeeeEeeCCCCCCHHHHH
Q 047385 242 AEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSPGKAFHIPYRDSKLTRILQDALGGNSRTALLCCCSPSTSNSAESL 321 (483)
Q Consensus 242 ~~~t~~~g~~~~E~~~IN~SL~aL~~vI~aL~~~~~~~~~~iPyRdSkLT~lLqdsLgGns~t~mI~~isp~~~~~~ETl 321 (483)
.+++++.|.+++|+.+||+||++||+||.+|+++ +..|||||||||||||||+||||++|+|||||||+..+++||+
T Consensus 242 ~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~---~~~hvPyRdSkLT~lLqdsLgGns~t~mI~~isP~~~~~~ETl 318 (355)
T 1goj_A 242 VGKTGASGQTLEEAKKINKSLSALGMVINALTDG---KSSHVPYRDSKLTRILQESLGGNSRTTLIINCSPSSYNDAETL 318 (355)
T ss_dssp CTTSSSCCCCTTTTGGGTSHHHHHHHHHHHHHHC---SCSCCCGGGCHHHHHTGGGTTSSCEEEEEEEECCBGGGHHHHH
T ss_pred ccccccchhhHHHHHhhhhHHHHHHHHHHHHhcC---CCCCCCCccCHHHHHHHHHhCCCCcEEEEEEECcccccHHHHH
Confidence 9999999999999999999999999999999973 4579999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccccCCcccccccch
Q 047385 322 STLRFGTRAKHIKASPHAHCSKESN 346 (483)
Q Consensus 322 sTL~fa~rak~I~~~~~~n~~~~~~ 346 (483)
+||+||+|||+|+|+|++|.+.+..
T Consensus 319 ~TL~fA~rak~I~n~~~vn~~~~~~ 343 (355)
T 1goj_A 319 STLRFGMRAKSIKNKAKVNAELSPA 343 (355)
T ss_dssp HHHHHHHHHHTCBCCCCCCSSSSCS
T ss_pred HHHHHHHHHhhccCCceeCCCCCHH
Confidence 9999999999999999999887653
No 2
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=100.00 E-value=1.2e-94 Score=737.62 Aligned_cols=332 Identities=40% Similarity=0.609 Sum_probs=275.5
Q ss_pred CCeEEEEEeCCCCccccccCCCceEEEe-cCCceEEEeCCC---------CcceeEeecEEecCCCchHHHHHHHHHHHH
Q 047385 2 SNITVCARFRPLSSKERSNHGDSVCIHG-IDNESFIFKDDK---------EENFKFGFDRVFYEKSEQAEVFEFLALPII 71 (483)
Q Consensus 2 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~-~~~~~~~~~~~~---------~~~~~F~FD~Vf~~~~~Q~~vf~~~~~plv 71 (483)
++|+|+|||||+++.|...+ ...|+.. .+...+.+.+|. ...+.|+||+||+++++|++||+.++.|+|
T Consensus 4 ~~i~V~vRvRP~~~~E~~~~-~~~~v~~~~~~~~v~v~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv 82 (350)
T 2vvg_A 4 DNIKVIVRCRPLNARETREN-ALNIIRMDEASAQVIVDPPEQEKSATQAKKVPRTFTFDAVYDQTSCNYGIFQASFKPLI 82 (350)
T ss_dssp CBCEEEEEECCCCHHHHHTT-CCBCEEEEGGGTEEEECC--------------EEEECSEEECTTCCHHHHHHHTTHHHH
T ss_pred CCeEEEEEeCCCChhhhccC-CceEEEEcCCCCEEEEeeccccccccccCCCceEeeCCEEECCCcchhHHHHHHHHHHH
Confidence 68999999999999998654 3344443 334456665542 246789999999999999999999999999
Q ss_pred HHhhcCcceEEEeeCCCCCCccceecCCCCCCccccccCchhhhHHHHHHhhhcCCCCcEEEEEEeEEEEecceeecccC
Q 047385 72 RDAFNGMNGTVITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTVDELFDCMKSSDASVKFTIKLSMVEIYMEKVRDLFD 151 (483)
Q Consensus 72 ~~~l~G~n~ti~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyne~v~DLL~ 151 (483)
+++++|||+||||||||||||||||+|++ +++|||||++++||+.+........|.|++||+|||||+|+|||+
T Consensus 83 ~~~l~G~n~tifAYGqTGSGKTyTm~G~~------~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~ 156 (350)
T 2vvg_A 83 DAVLEGFNSTIFAYGQTGAGKTWTMGGNK------EEPGAIPNSFKHLFDAINSSSSNQNFLVIGSYLELYNEEIRDLIK 156 (350)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHHTBCS------SSBCHHHHHHHHHHHHHHTCCTTEEEEEEEEEEEEETTEEEETTT
T ss_pred HHHhCCCceeEEeecCCCCCCCEEeecCC------ccCchHHHHHHHHHHHHHhhccCCcEEEEEEEEEEeCCEEEEccc
Confidence 99999999999999999999999999954 568999999999999998777788999999999999999999998
Q ss_pred CCCCcceeeeccCCceEecCcEEEEecCHHHHHHHHHhhhhccCcccccCCCCCCCceEEEEEEEEEeecc--cceeEee
Q 047385 152 LSRDNIQIKESRVQGILLSGVTEIYVFNSAEALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQELTK--EKRVKAG 229 (483)
Q Consensus 152 ~~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~--~~~~~~s 229 (483)
+ ...+.+++++.++++|.|++++.|.|++|++++|..|.++|++++|.||..|||||+||+|+|++.... ......|
T Consensus 157 ~-~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~s 235 (350)
T 2vvg_A 157 N-NTKLPLKEDKTRGIYVDGLSMHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSEVIENKEVIRVG 235 (350)
T ss_dssp T-EEEECEEEETTTEEEETTCCCEEESSHHHHHHHHHHHHHHC----------CTTCEEEEEEEEEEEEC----CEEEEE
T ss_pred C-CcCceeeEcCCCCEEecCCEEEEcCCHHHHHHHHHHHHhccccccccCCCCCCcceEEEEEEEEEeeccCCCccEEEE
Confidence 4 457999999999999999999999999999999999999999999999999999999999999987543 3346789
Q ss_pred eeeeeeCCCCccccccCCchhhHHHHHHhhhhHHHHHHHHHHhccCCCCCCCCccCCCcccchhhhhccCCCcceeeeEe
Q 047385 230 KLLLVDLAGSEKAEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSPGKAFHIPYRDSKLTRILQDALGGNSRTALLCC 309 (483)
Q Consensus 230 kL~~VDLAGsEr~~~t~~~g~~~~E~~~IN~SL~aL~~vI~aL~~~~~~~~~~iPyRdSkLT~lLqdsLgGns~t~mI~~ 309 (483)
+|+|||||||||.+++++.|.+++|+.+||+||++||+||.+|+++ ..|||||||||||||||+||||++|+||||
T Consensus 236 kl~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~----~~hvPyRdSkLT~lLqdsLgGnskt~mI~~ 311 (350)
T 2vvg_A 236 KLNLVDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEG----ATHIPYRDSKLTRLLQDSLGGNSKTLMCAN 311 (350)
T ss_dssp EEEEEECCCCCC---------------CTTHHHHHHHHHHHHHHHT----CSSCCGGGCHHHHHTTTTTTSSSEEEEEEE
T ss_pred EEEEEeCCCCCccccccccHHHHHHHHHHhHHHHHHHHHHHHHHcC----CCCCCccccHHHHHHHHhcCCCccEEEEEE
Confidence 9999999999999999999999999999999999999999999983 479999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHHhcccccCCcccccccc
Q 047385 310 CSPSTSNSAESLSTLRFGTRAKHIKASPHAHCSKES 345 (483)
Q Consensus 310 isp~~~~~~ETlsTL~fa~rak~I~~~~~~n~~~~~ 345 (483)
|||+..+++||++||+||+|||+|+|+|++|+++..
T Consensus 312 isP~~~~~~ETl~TL~fA~rak~i~n~~~~n~~~~~ 347 (350)
T 2vvg_A 312 ISPASTNYDETMSTLRYADRAKQIKNKPRINEDPKD 347 (350)
T ss_dssp ECCBGGGHHHHHHHHHHHHHHTTCBCCCCCCBSCTT
T ss_pred eCCccccHHHHHHHHHHHHHHhhccccceecCCchh
Confidence 999999999999999999999999999999988753
No 3
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=100.00 E-value=9.5e-95 Score=742.32 Aligned_cols=332 Identities=44% Similarity=0.694 Sum_probs=289.6
Q ss_pred CCeEEEEEeCCCCccccccCCCceEEEecC---CceEEEeCCCCcceeEeecEEecCCCchHHHHHHHHHHHHHHhhcCc
Q 047385 2 SNITVCARFRPLSSKERSNHGDSVCIHGID---NESFIFKDDKEENFKFGFDRVFYEKSEQAEVFEFLALPIIRDAFNGM 78 (483)
Q Consensus 2 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~ 78 (483)
++|+|+|||||+++.|...+ ...|+...+ ...+.+ ..+.|+||+||+++++|++||+.++.|+|+++++||
T Consensus 11 ~~i~V~vRvRP~~~~E~~~~-~~~~v~~~~~~~~~~i~~-----~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~ 84 (365)
T 2y65_A 11 DSIKVVCRFRPLNDSEEKAG-SKFVVKFPNNVEENCISI-----AGKVYLFDKVFKPNASQEKVYNEAAKSIVTDVLAGY 84 (365)
T ss_dssp EECEEEEEECCCCHHHHHTT-CCBCEECCSSSTTCEEEE-----TTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHTTC
T ss_pred CCeEEEEEcCcCChhHhccC-CceEEEeCCCCCCcEEEE-----CCEEEeCceEecCCCCHHHHHHHhhhhHHHHHhCCC
Confidence 48999999999999997643 333444333 233333 247899999999999999999999999999999999
Q ss_pred ceEEEeeCCCCCCccceecCCCCCCccccccCchhhhHHHHHHhhhcCCCCcEEEEEEeEEEEecceeecccCCCCCcce
Q 047385 79 NGTVITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTVDELFDCMKSSDASVKFTIKLSMVEIYMEKVRDLFDLSRDNIQ 158 (483)
Q Consensus 79 n~ti~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyne~v~DLL~~~~~~l~ 158 (483)
|+||||||||||||||||+|+.. ++..+|||||++++||+.+.......+|.|++||+|||||+|+|||++....+.
T Consensus 85 n~tifAYGqTGSGKTyTm~G~~~---~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~l~ 161 (365)
T 2y65_A 85 NGTIFAYGQTSSGKTHTMEGVIG---DSVKQGIIPRIVNDIFNHIYAMEVNLEFHIKVSYYEIYMDKIRDLLDVSKVNLS 161 (365)
T ss_dssp CEEEEEECSTTSSHHHHHTBSTT---CTTTBCHHHHHHHHHHHHHHHCCSCEEEEEEEEEEEEETTEEEETTCTTCCSBC
T ss_pred ceEEEeecCCCCCCceEEecCCC---CcccCChHHHHHHHHHHHHHhccCCceEEEEEEEEEEECCeeeecccCCcCCce
Confidence 99999999999999999999653 345789999999999999988777889999999999999999999999888999
Q ss_pred eeeccCCceEecCcEEEEecCHHHHHHHHHhhhhccCcccccCCCCCCCceEEEEEEEEEeecccceeEeeeeeeeeCCC
Q 047385 159 IKESRVQGILLSGVTEIYVFNSAEALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQELTKEKRVKAGKLLLVDLAG 238 (483)
Q Consensus 159 i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~skL~~VDLAG 238 (483)
+++++.++++|.|++++.|.|++|++++|..|.++|++++|.||..|||||+||+|+|.+..........|+|+||||||
T Consensus 162 i~e~~~~~~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~skL~lVDLAG 241 (365)
T 2y65_A 162 VHEDKNRVPYVKGATERFVSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLENQKKLSGKLYLVDLAG 241 (365)
T ss_dssp EEECSSSCEEETTCCCEEECSHHHHHHHHHHHHHHHTTTCSCHHHHHHTSEEEEEEEEEEEETTTCCEEEEEEEEEECCC
T ss_pred EEECCCCCEEecCCEEEecCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEEEecCCCCEeEEEEEEEECCC
Confidence 99999999999999999999999999999999999999999999999999999999999988777778899999999999
Q ss_pred CccccccCCchhhHHHHHHhhhhHHHHHHHHHHhccCCCCCCCCccCCCcccchhhhhccCCCcceeeeEeeCCCCCCHH
Q 047385 239 SEKAEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSPGKAFHIPYRDSKLTRILQDALGGNSRTALLCCCSPSTSNSA 318 (483)
Q Consensus 239 sEr~~~t~~~g~~~~E~~~IN~SL~aL~~vI~aL~~~~~~~~~~iPyRdSkLT~lLqdsLgGns~t~mI~~isp~~~~~~ 318 (483)
|||..++++.|.+++|+.+||+||++||+||.||+++ +..|||||||||||||||+||||++|+|||||||+..+++
T Consensus 242 SEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~---~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~~~~~~ 318 (365)
T 2y65_A 242 SEKVSKTGAEGTVLDEAKNINKSLSALGNVISALADG---NKTHIPYRDSKLTRILQESLGGNARTTIVICCSPASFNES 318 (365)
T ss_dssp CCC----------------CCHHHHHHHHHHHHHHHC---CCSCCCGGGCHHHHHTGGGTTSSSEEEEEEEECCBGGGHH
T ss_pred CCcchhcCCcchhHHHHHHHHHHHHHHHHHHHHHhcC---CCCCCccccCHHHHHHHhhcCCCccEEEEEEecCccCCHH
Confidence 9999999999999999999999999999999999974 3579999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccccCCcccccccc
Q 047385 319 ESLSTLRFGTRAKHIKASPHAHCSKES 345 (483)
Q Consensus 319 ETlsTL~fa~rak~I~~~~~~n~~~~~ 345 (483)
||++||+||+|||+|+|.|.+|++...
T Consensus 319 ETl~TL~fA~rak~I~n~~~~n~~~~~ 345 (365)
T 2y65_A 319 ETKSTLDFGRRAKTVKNVVCVNEELTA 345 (365)
T ss_dssp HHHHHHHHHHHHTTCEEECCCEEECCS
T ss_pred HHHHHHHHHHHHhcccCcceeCCCCCH
Confidence 999999999999999999999987653
No 4
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=100.00 E-value=6.8e-95 Score=746.24 Aligned_cols=333 Identities=34% Similarity=0.572 Sum_probs=254.8
Q ss_pred CCeEEEEEeCCCCccccccCCCceEEEecCCceEEEeCCC--CcceeEeecEEecCCCchHHHHHHHHHHHHHHhhcCcc
Q 047385 2 SNITVCARFRPLSSKERSNHGDSVCIHGIDNESFIFKDDK--EENFKFGFDRVFYEKSEQAEVFEFLALPIIRDAFNGMN 79 (483)
Q Consensus 2 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~F~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n 79 (483)
++|+|+|||||+++.|... +...|+...++.++.+.++. ...+.|+||+||+++++|++||+.++.|+|+++++|||
T Consensus 21 ~~irV~vRvRP~~~~E~~~-~~~~~v~~~~~~~~~i~~~~~~~~~~~f~FD~Vf~~~~tQ~~Vy~~~~~plv~~~l~G~N 99 (388)
T 3bfn_A 21 ARVRVAVRLRPFVDGTAGA-SDPPCVRGMDSCSLEIANWRNHQETLKYQFDAFYGERSTQQDIYAGSVQPILRHLLEGQN 99 (388)
T ss_dssp CCCEEEEEECCCC------------------------------CEEEEECSEEECTTCCHHHHHHHHTGGGHHHHTTTCC
T ss_pred CCEEEEEECCCCChhhhcc-CCCceEEecCCCeEEEecCCCCCCeeEEEcceEecCCCCHhHHHHHHHHHHHHHhhcCce
Confidence 7899999999999999753 34568877777777665433 24578999999999999999999999999999999999
Q ss_pred eEEEeeCCCCCCccceecCCCCCCccccccCchhhhHHHHHHhhhcC---CCCcEEEEEEeEEEEecceeecccCCCCCc
Q 047385 80 GTVITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTVDELFDCMKSS---DASVKFTIKLSMVEIYMEKVRDLFDLSRDN 156 (483)
Q Consensus 80 ~ti~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~i~~~---~~~~~~~v~vS~~EIyne~v~DLL~~~~~~ 156 (483)
+||||||||||||||||+|++ +++|||||++++||+.+... .....|.|++||+|||||+|+|||++....
T Consensus 100 ~tifAYGqTGSGKTyTM~G~~------~~~Giipra~~~lF~~i~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~~~~ 173 (388)
T 3bfn_A 100 ASVLAYGPTGAGKTHTMLGSP------EQPGVIPRALMDLLQLTREEGAEGRPWALSVTMSYLEIYQEKVLDLLDPASGD 173 (388)
T ss_dssp EEEEEESCTTSSHHHHHTBCS------SSBCHHHHHHHHHHHHHHHHTSTTCSEEEEEEEEEEEEETTEEEESSSCSSCB
T ss_pred eeEeeecCCCCCCCeEeecCc------cccchhHHHHHHHHHHHHHhhccCCCceEEEEEEEEEEECCeeeehhccCCCC
Confidence 999999999999999999954 56899999999999999752 346789999999999999999999998889
Q ss_pred ceeeeccCCceEecCcEEEEecCHHHHHHHHHhhhhccCcccccCCCCCCCceEEEEEEEEEeecc-cceeEeeeeeeee
Q 047385 157 IQIKESRVQGILLSGVTEIYVFNSAEALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQELTK-EKRVKAGKLLLVD 235 (483)
Q Consensus 157 l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~-~~~~~~skL~~VD 235 (483)
+.+++++.++++|.|++++.|.|++|++++|..|.++|++++|.||..|||||+||+|+|.+.... ......|+|+|||
T Consensus 174 l~ired~~~~v~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~skL~lVD 253 (388)
T 3bfn_A 174 LVIREDCRGNILIPGLSQKPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQRERLAPFRQREGKLYLID 253 (388)
T ss_dssp CCCEECTTSCEECTTCCCEECCSHHHHHHHHHHHTC-----------CGGGSEEEEEEEEEEEESSTTCCEEEEEEEEEE
T ss_pred ceEEEcCCCCEEeccceEEEeCCHHHHHHHHHHHhhccccccccCCCCCCCCeEEEEEEEEEeccCCCCceeEEEEEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999987543 2345789999999
Q ss_pred CCCCccccccCCchhhHHHHHHhhhhHHHHHHHHHHhccCCCCCCCCccCCCcccchhhhhccCCCcceeeeEeeCCCCC
Q 047385 236 LAGSEKAEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSPGKAFHIPYRDSKLTRILQDALGGNSRTALLCCCSPSTS 315 (483)
Q Consensus 236 LAGsEr~~~t~~~g~~~~E~~~IN~SL~aL~~vI~aL~~~~~~~~~~iPyRdSkLT~lLqdsLgGns~t~mI~~isp~~~ 315 (483)
||||||..++++.|.+++|+.+||+||++||+||.||++ +..|||||||||||||||+||||++|+|||||||+..
T Consensus 254 LAGSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~----~~~hVPYRdSkLTrlLqdsLgGnskT~mIa~iSP~~~ 329 (388)
T 3bfn_A 254 LAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQ----GLPRVPYRDSKLTRLLQDSLGGSAHSILIANIAPERR 329 (388)
T ss_dssp CCCTTC--------------CCCCHHHHHHHHHHHHHHT----TCSCCCGGGSHHHHHTTTSSSTTCEEEEEEEECCSGG
T ss_pred CCCCcccccccCccchhHHHhHhhhhHHHHHHHHHHHhc----CCCCCcCcccHHHHHHHHhhCCCccEEEEEEECCccc
Confidence 999999999999999999999999999999999999987 3459999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcccccCCcccccccc
Q 047385 316 NSAESLSTLRFGTRAKHIKASPHAHCSKES 345 (483)
Q Consensus 316 ~~~ETlsTL~fa~rak~I~~~~~~n~~~~~ 345 (483)
+++||++||+||+|||+|+|+|.+|++.+.
T Consensus 330 ~~~ETlsTLrfA~rak~I~n~p~~n~~~~~ 359 (388)
T 3bfn_A 330 FYLDTVSALNFAARSKEVINRPFTNESLQP 359 (388)
T ss_dssp GHHHHHHHHHHHCSEEEEC-----------
T ss_pred cHHHHHHHHHHHHHHhhCcCcCcccCCCCH
Confidence 999999999999999999999999988764
No 5
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=100.00 E-value=6.8e-94 Score=736.35 Aligned_cols=330 Identities=35% Similarity=0.534 Sum_probs=304.1
Q ss_pred CCeEEEEEeCCCCccccccCCCceEEEecCCceEEEeCCCCcceeEeecEEecCCCchHHHHHHHHHHHHHHhhcCcceE
Q 047385 2 SNITVCARFRPLSSKERSNHGDSVCIHGIDNESFIFKDDKEENFKFGFDRVFYEKSEQAEVFEFLALPIIRDAFNGMNGT 81 (483)
Q Consensus 2 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~t 81 (483)
++|+|+|||||+++.|...+. ..++...+..++.........+.|.||+||+++++|++||+. +.|+|+++++|||+|
T Consensus 5 ~~i~V~vRvRP~~~~E~~~~~-~~~~~~~~~~~v~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~-~~~lv~~~l~G~n~t 82 (369)
T 3cob_A 5 GKIRVYCRLRPLCEKEIIAKE-RNAIRSVDEFTVEHLWKDDKAKQHMYDRVFDGNATQDDVFED-TKYLVQSAVDGYNVC 82 (369)
T ss_dssp CBCEEEEEECCCCHHHHHTTC-CBCEEECSSSEEEEECTTSCEEEEECSEEECTTCCHHHHHHT-TTHHHHHHHTTCEEE
T ss_pred CCeEEEEECCCCChhhccCCC-cEEEEcCCcEEEEecCCCCCceEEecCEEECCCCCcceehhh-hhhhhHhhhcCCceE
Confidence 689999999999999976433 344444444455544444566899999999999999999999 689999999999999
Q ss_pred EEeeCCCCCCccceecCCCCCCccccccCchhhhHHHHHHhhhcCCCCcEEEEEEeEEEEecceeecccCCCC---Ccce
Q 047385 82 VITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTVDELFDCMKSSDASVKFTIKLSMVEIYMEKVRDLFDLSR---DNIQ 158 (483)
Q Consensus 82 i~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyne~v~DLL~~~~---~~l~ 158 (483)
|||||||||||||||+|++ .++|||||++++||+.+........|.|++||+|||||+|+|||++.. ..+.
T Consensus 83 ifAYGqTGSGKTyTM~G~~------~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~l~ 156 (369)
T 3cob_A 83 IFAYGQTGSGKTFTIYGAD------SNPGLTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLD 156 (369)
T ss_dssp EEEEECTTSSHHHHHTBCS------SSBCHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEECSSCEEESSCCSSSCCCCCE
T ss_pred EEEECCCCCCCeEeecCCC------CCCchhHHHHHHHHHHHHhhccCceeEEEEEEEEEeCceeeecCCCcccCCcceE
Confidence 9999999999999999964 568999999999999998876678999999999999999999998753 4799
Q ss_pred eeeccCCceEecCcEEEEecCHHHHHHHHHhhhhccCcccccCCCCCCCceEEEEEEEEEeecccceeEeeeeeeeeCCC
Q 047385 159 IKESRVQGILLSGVTEIYVFNSAEALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQELTKEKRVKAGKLLLVDLAG 238 (483)
Q Consensus 159 i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~skL~~VDLAG 238 (483)
+++++.++++|.|++++.|.|++|++++|..|.++|++++|.||..|||||+||+|+|++..........|+|+||||||
T Consensus 157 i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~skL~lVDLAG 236 (369)
T 3cob_A 157 IKKDSKGMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQTQAIARGKLSFVDLAG 236 (369)
T ss_dssp EEECTTSCEEEETCCCEEECSHHHHHHHHHHHHHHTCCCSCCTTCHHHHSEEEEEEEEEEEETTTCCEEEEEEEEEECCC
T ss_pred EEECCCCCEEccCCEEEEeCCHHHHHHHHHHHhhcceeecccCCCCCCcceEEEEEEEEEecCCCCcEEEEEEEEEeCCC
Confidence 99999999999999999999999999999999999999999999999999999999999988777788899999999999
Q ss_pred CccccccCCchhhHHHHHHhhhhHHHHHHHHHHhccCCCCCCCCccCCCcccchhhhhccCCCcceeeeEeeCCCCCCHH
Q 047385 239 SEKAEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSPGKAFHIPYRDSKLTRILQDALGGNSRTALLCCCSPSTSNSA 318 (483)
Q Consensus 239 sEr~~~t~~~g~~~~E~~~IN~SL~aL~~vI~aL~~~~~~~~~~iPyRdSkLT~lLqdsLgGns~t~mI~~isp~~~~~~ 318 (483)
|||..++++.|.+++|+.+||+||++||+||.||++ +..|||||||||||||||+||||++|+|||||||+..+++
T Consensus 237 SEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~----~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~~~ 312 (369)
T 3cob_A 237 SERVKKSGSAGNQLKEAQSINKSLSALGDVISALSS----GNQHIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLD 312 (369)
T ss_dssp SSCCCCCSSCSHHHHHHHHHTHHHHHHHHHHHHHHT----TCSCCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGGGHH
T ss_pred CCcccccCccchhhHHHHHHHHHHHHHHHHHHHHhc----CCCcCCCcCCHHHHHHHHhcCCCccEEEEEEeCCccccHH
Confidence 999999999999999999999999999999999997 3569999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccccCCcccccc
Q 047385 319 ESLSTLRFGTRAKHIKASPHAHCSK 343 (483)
Q Consensus 319 ETlsTL~fa~rak~I~~~~~~n~~~ 343 (483)
||++||+||+|||+|+|.|.+|.++
T Consensus 313 ETl~TLrfA~rak~i~~~~~~n~~~ 337 (369)
T 3cob_A 313 ETHNSLTYASRVRSIVNDPSKNVSS 337 (369)
T ss_dssp HHHHHHHHHHHHHTCBCCCCCCEEC
T ss_pred HHHHHHHHHHHHhhcccCCcccCCH
Confidence 9999999999999999999999764
No 6
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=100.00 E-value=2.9e-94 Score=739.20 Aligned_cols=335 Identities=39% Similarity=0.644 Sum_probs=290.4
Q ss_pred CCeEEEEEeCCCCccccccCCCceEEE-ecCCceEEEeCCC----CcceeEeecEEecCCCchHHHHHHHHHHHHHHhhc
Q 047385 2 SNITVCARFRPLSSKERSNHGDSVCIH-GIDNESFIFKDDK----EENFKFGFDRVFYEKSEQAEVFEFLALPIIRDAFN 76 (483)
Q Consensus 2 ~~i~V~vRvRP~~~~E~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~~F~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~ 76 (483)
++|+|+|||||++..|...+. ..|+. ..+...+.+..+. ...+.|+||+||+++++|++||+.+++|+|+++++
T Consensus 21 ~~irV~vRvRP~~~~E~~~~~-~~~v~~~~~~~~v~v~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~ 99 (372)
T 3b6u_A 21 ESVRVVVRCRPMNGKEKAASY-DKVVDVDVKLGQVSVKNPKGTAHEMPKTFTFDAVYDWNAKQFELYDETFRPLVDSVLQ 99 (372)
T ss_dssp CBCEEEEEECCCCHHHHHTTC-CBCEEEETTTTEEEECCTTCTTTCCCEEEECSEEECTTCCHHHHHHHTHHHHHHHHHT
T ss_pred CCeEEEEEcCCCChhhhccCC-ceEEEEeCCCCEEEEECCCCCCCCCceEEEcCeEeCCcCchHHHHHHHHHHHHHHHhC
Confidence 689999999999999986543 33443 3345566666553 34689999999999999999999999999999999
Q ss_pred CcceEEEeeCCCCCCccceecCCCCCCccccccCchhhhHHHHHHhhhcCCCCcEEEEEEeEEEEecceeecccCCCC-C
Q 047385 77 GMNGTVITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTVDELFDCMKSSDASVKFTIKLSMVEIYMEKVRDLFDLSR-D 155 (483)
Q Consensus 77 G~n~ti~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyne~v~DLL~~~~-~ 155 (483)
|||+||||||||||||||||+|+.. +++++|||||++++||+.+... ....|.|++||+|||||+|+|||++.. .
T Consensus 100 G~n~tifAYGqTGSGKTyTM~G~~~---~~~~~Giipr~~~~lF~~i~~~-~~~~~~v~vS~~EIYnE~i~DLL~~~~~~ 175 (372)
T 3b6u_A 100 GFNGTIFAYGQTGTGKTYTMEGIRG---DPEKRGVIPNSFDHIFTHISRS-QNQQYLVRASYLEIYQEEIRDLLSKDQTK 175 (372)
T ss_dssp TCCEEEEEEESTTSSHHHHHTBCTT---SGGGBCHHHHHHHHHHHHHHTC-SSCEEEEEEEEEEEETTEEEETTSSCTTC
T ss_pred CCeeeEEeecCCCCCCCEeEecCCC---CcccCCcHHHHHHHHHHHhhhc-cCCceEEEEEEEEEeCCEEEECCCCCCCC
Confidence 9999999999999999999999753 3467899999999999999874 568999999999999999999998764 5
Q ss_pred cceeeeccCCceEecCcEEEEecCHHHHHHHHHhhhhccCcccccCCCCCCCceEEEEEEEEEeec---ccceeEeeeee
Q 047385 156 NIQIKESRVQGILLSGVTEIYVFNSAEALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQELT---KEKRVKAGKLL 232 (483)
Q Consensus 156 ~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~---~~~~~~~skL~ 232 (483)
.+.+++++.++++|.|++++.|.|++|++++|..|.++|++++|.||..|||||+||+|+|++... .......|+|+
T Consensus 176 ~l~i~e~~~~~v~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~skL~ 255 (372)
T 3b6u_A 176 RLELKERPDTGVYVKDLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEVGLDGENHIRVGKLN 255 (372)
T ss_dssp CBCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHTTTCSSHHHHHHTSEEEEEEEEEEEC-----CCCEEEEEEE
T ss_pred CceEEECCCCcEecCCCEEEEecCHHHHHHHHHHHHHhcCcccccCCCCCCcceEEEEEEEEEeecCCCCCcceEEEEEE
Confidence 799999999999999999999999999999999999999999999999999999999999998653 23456789999
Q ss_pred eeeCCCCccccccCCchhhHHHHHHhhhhHHHHHHHHHHhccCCCCCCCCccCCCcccchhhhhccCCCcceeeeEeeCC
Q 047385 233 LVDLAGSEKAEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSPGKAFHIPYRDSKLTRILQDALGGNSRTALLCCCSP 312 (483)
Q Consensus 233 ~VDLAGsEr~~~t~~~g~~~~E~~~IN~SL~aL~~vI~aL~~~~~~~~~~iPyRdSkLT~lLqdsLgGns~t~mI~~isp 312 (483)
|||||||||..++++.|.+++|+.+||+||++||+||.||+++ +..|||||||||||||||+||||++|+|||||||
T Consensus 256 lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~---~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~vsP 332 (372)
T 3b6u_A 256 LVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDG---KSTHIPYRDSKLTRLLQDSLGGNAKTVMVANVGP 332 (372)
T ss_dssp EEECCCCCE----------EEEGGGCCHHHHHHHHHHHHHHCC------CCCGGGSHHHHHTTTTTTSSSEEEEEEEECC
T ss_pred EEECCCCccccccCcchhhhhhHhhhhhhHHHHHHHHHHHhcC---CCCCCcccccHHHHHHHHhcCCCccEEEEEEeCC
Confidence 9999999999999999999999999999999999999999873 4569999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcccccCCccccccc
Q 047385 313 STSNSAESLSTLRFGTRAKHIKASPHAHCSKE 344 (483)
Q Consensus 313 ~~~~~~ETlsTL~fa~rak~I~~~~~~n~~~~ 344 (483)
+..+++||++||+||+|||+|+|+|++|+++.
T Consensus 333 ~~~~~~ETlsTLrfA~rak~I~n~~~~n~~~~ 364 (372)
T 3b6u_A 333 ASYNVEETLTTLRYANRAKNIKNKPRVNEDPK 364 (372)
T ss_dssp BGGGHHHHHHHHHHHHHHTTCBCCCCCCC---
T ss_pred cccCHHHHHHHHHHHHHHhhccccceecCChH
Confidence 99999999999999999999999999998764
No 7
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=100.00 E-value=1.8e-93 Score=734.24 Aligned_cols=335 Identities=36% Similarity=0.594 Sum_probs=283.2
Q ss_pred CCCeEEEEEeCCCCccccccCCCceEEEecCCceEEEeCCC---CcceeEeecEEecCC--------CchHHHHHHHHHH
Q 047385 1 MSNITVCARFRPLSSKERSNHGDSVCIHGIDNESFIFKDDK---EENFKFGFDRVFYEK--------SEQAEVFEFLALP 69 (483)
Q Consensus 1 m~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~F~FD~Vf~~~--------~~Q~~vf~~~~~p 69 (483)
|++|+|+|||||++..|...+ ..|+..+++..+.+.++. ...+.|+||+||+++ ++|++||+.+++|
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~--~~~~v~~~~~~~~i~~~~~~~~~~~~f~FD~vf~~~~~~~~~~~asQ~~Vy~~~~~p 80 (366)
T 2zfi_A 3 GASVKVAVRVRPFNSREMSRD--SKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEE 80 (366)
T ss_dssp -CCEEEEEEECCCCHHHHHTT--CCBCEEEETTEEEECCTTCTTSCCEEEECSEEEECSSCTTSSSCCCHHHHHHHTHHH
T ss_pred CCCcEEEEECCCCChhhccCC--CCeEEEECCCcEEEeccCCCCCCceEEecceEeecCccccccccCcHHHHHHHHHHH
Confidence 579999999999999997643 345555566666665543 246899999999987 8999999999999
Q ss_pred HHHHhhcCcceEEEeeCCCCCCccceecCCCCCCccccccCchhhhHHHHHHhhhcC-CCCcEEEEEEeEEEEecceeec
Q 047385 70 IIRDAFNGMNGTVITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTVDELFDCMKSS-DASVKFTIKLSMVEIYMEKVRD 148 (483)
Q Consensus 70 lv~~~l~G~n~ti~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~i~~~-~~~~~~~v~vS~~EIyne~v~D 148 (483)
+|+++++|||+||||||||||||||||+|+.. .+++|||||++++||+.+... .....|.|++||+|||||+|+|
T Consensus 81 lv~~~l~G~N~tifAYGqTGSGKTyTm~G~~~----~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~v~D 156 (366)
T 2zfi_A 81 MLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQE----KDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRD 156 (366)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHHTBCSG----GGCBCHHHHHHHHHHHHHHTCCCTTEEEEEEEEEEEEETTEEEE
T ss_pred HHHHHhcCCeeEEEEeCCCCCCCceEeeCCCc----cCCCccHHHHHHHHHHHHhhcccCCeeEEEEEEEEEeeCCeEEE
Confidence 99999999999999999999999999999642 357899999999999999765 3467999999999999999999
Q ss_pred ccCCCC-CcceeeeccCCceEecCcEEEEecCHHHHHHHHHhhhhccCcccccCCCCCCCceEEEEEEEEEeeccc----
Q 047385 149 LFDLSR-DNIQIKESRVQGILLSGVTEIYVFNSAEALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQELTKE---- 223 (483)
Q Consensus 149 LL~~~~-~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~---- 223 (483)
||++.. ..+.+++++.+|++|.||+++.|.|++|++++|..|.++|++++|.||..|||||+||+|+|.+.....
T Consensus 157 LL~~~~~~~l~ire~~~~g~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~ 236 (366)
T 2zfi_A 157 LLNPKNKGNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAETNI 236 (366)
T ss_dssp TTCTTTCSCBCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHTSGGGGTTTHHHHSEEEEEEEEEEEEECTTTTC
T ss_pred ccccccCCCceEEEcCCCCEEEeCCEEEEECCHHHHHHHHHHHhhccccccccCCCCCCcceEEEEEEEEEecccCCCCc
Confidence 999864 479999999999999999999999999999999999999999999999999999999999999865422
Q ss_pred ceeEeeeeeeeeCCCCccccccCCchhhHHHHHHhhhhHHHHHHHHHHhccCC--------CCCCCCccCCCcccchhhh
Q 047385 224 KRVKAGKLLLVDLAGSEKAEKTGAEGKVLEEAKTINKSLSALGNVISALTCGS--------PGKAFHIPYRDSKLTRILQ 295 (483)
Q Consensus 224 ~~~~~skL~~VDLAGsEr~~~t~~~g~~~~E~~~IN~SL~aL~~vI~aL~~~~--------~~~~~~iPyRdSkLT~lLq 295 (483)
.....|+|+|||||||||.+++++.|.+++|+.+||+||++||+||.||++.. .++..||||||||||||||
T Consensus 237 ~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~~~~~~~~~~hvPyRdSkLT~lLq 316 (366)
T 2zfi_A 237 TTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLR 316 (366)
T ss_dssp EEEEEEEEEEEECCCGGGC------CCCHHHHHHHHHHHHHHHHHHHHHHHHC--------------CCGGGSHHHHHTG
T ss_pred cceeEeEEEEEeCCCCccccccCCCccchhhhhhHhHHHHHHHHHHHHHHhcccccccccccccCCcccccccHHHHHHH
Confidence 34568999999999999999999999999999999999999999999998642 1246799999999999999
Q ss_pred hccCCCcceeeeEeeCCCCCCHHHHHHHHHHHHHhcccccCCcccc
Q 047385 296 DALGGNSRTALLCCCSPSTSNSAESLSTLRFGTRAKHIKASPHAHC 341 (483)
Q Consensus 296 dsLgGns~t~mI~~isp~~~~~~ETlsTL~fa~rak~I~~~~~~n~ 341 (483)
|+||||++|+|||||||+..+++||++||+||+|||+|+|+|.++.
T Consensus 317 dsLgGnskt~mIa~isP~~~~~~ETlsTLrfA~rak~I~~~~~~~~ 362 (366)
T 2zfi_A 317 ENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVNH 362 (366)
T ss_dssp GGSSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHTC----------
T ss_pred HHhCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCCCCCCC
Confidence 9999999999999999999999999999999999999999998864
No 8
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=100.00 E-value=2.7e-93 Score=728.02 Aligned_cols=332 Identities=38% Similarity=0.594 Sum_probs=288.9
Q ss_pred CCCeEEEEEeCCCCccccccCCCceEEEecCCceEEEeCCCCcceeEeecEEecCCCchHHHHHHHHHHHHHHhhcCcce
Q 047385 1 MSNITVCARFRPLSSKERSNHGDSVCIHGIDNESFIFKDDKEENFKFGFDRVFYEKSEQAEVFEFLALPIIRDAFNGMNG 80 (483)
Q Consensus 1 m~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ 80 (483)
.++|+|+|||||++..|...+....+....++..+... ...+.|.||+||+++++|++||+.++.|+|+++++|||+
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~i~~~---~~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plv~~~l~G~n~ 79 (349)
T 1t5c_A 3 EGAVAVCVRVRPLNSREESLGETAQVYWKTDNNVIYQV---DGSKSFNFDRVFHGNETTKNVYEEIAAPIIDSAIQGYNG 79 (349)
T ss_dssp CCCEEEEEEECCCSCSSCTTTTCCCCCEEEETTEEEET---TSSCEEECSCEECTTSCHHHHHHHTTHHHHHHHHTTCCE
T ss_pred CCCEEEEEECCCCChhhhccCCCcEEEEeCCCCeEEEC---CCCeEEECCEEECCCCCHHHHHHHHHHHHHHHHHcCCcc
Confidence 47999999999999999764433322223344444332 235799999999999999999999999999999999999
Q ss_pred EEEeeCCCCCCccceecCCCCCCccccccCchhhhHHHHHHhhhcCCCCcEEEEEEeEEEEecceeecccCCCC--Ccce
Q 047385 81 TVITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTVDELFDCMKSSDASVKFTIKLSMVEIYMEKVRDLFDLSR--DNIQ 158 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyne~v~DLL~~~~--~~l~ 158 (483)
||||||||||||||||+|++ +++|||||++++||+.++.. +...|.|+|||+|||||+|+|||++.. .++.
T Consensus 80 tifAYGqTGSGKTyTM~G~~------~~~Giipr~~~~lF~~i~~~-~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~l~ 152 (349)
T 1t5c_A 80 TIFAYGQTASGKTYTMMGSE------DHLGVIPRAIHDIFQKIKKF-PDREFLLRVSYMEIYNETITDLLCGTQKMKPLI 152 (349)
T ss_dssp EEEEEESTTSSHHHHHTBCS------SSBCHHHHHHHHHHHHGGGC-TTEEEEEEEEEEEEETTEEEESSSSSCTTCCEE
T ss_pred ceeeecCCCCCCCeEEecCC------CCCchHHHHHHHHHHHHHhC-cCCcEEEEEEEEEEeCCEEEEccCCCCCCCCce
Confidence 99999999999999999954 56899999999999999876 467999999999999999999998754 5799
Q ss_pred eeeccCCceEecCcEEEEecCHHHHHHHHHhhhhccCcccccCCCCCCCceEEEEEEEEEeeccc-----ceeEeeeeee
Q 047385 159 IKESRVQGILLSGVTEIYVFNSAEALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQELTKE-----KRVKAGKLLL 233 (483)
Q Consensus 159 i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~-----~~~~~skL~~ 233 (483)
+++++.++++|.|++++.|.|++|++++|..|.++|++++|.||..|||||+||+|++++..... .....|+|+|
T Consensus 153 i~ed~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~~~~skL~l 232 (349)
T 1t5c_A 153 IREDVNRNVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEGSVKVSHLNL 232 (349)
T ss_dssp EEETTTTEEEETTCCCEECSSHHHHHHHHHHHHHTTSSSSSSSSCTTTTCEEEEEEEEEEEECC-------CEEEEEEEE
T ss_pred EEECCCCCEEecCCEEEEeCCHHHHHHHHHHhhcccccccccCCCCCCCceEEEEEEEEEeccCCCcCcCccEEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999876432 3467899999
Q ss_pred eeCCCCccccccCCchhhHHHHHHhhhhHHHHHHHHHHhccCCCCCCCCccCCCcccchhhhhccCCCcceeeeEeeCCC
Q 047385 234 VDLAGSEKAEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSPGKAFHIPYRDSKLTRILQDALGGNSRTALLCCCSPS 313 (483)
Q Consensus 234 VDLAGsEr~~~t~~~g~~~~E~~~IN~SL~aL~~vI~aL~~~~~~~~~~iPyRdSkLT~lLqdsLgGns~t~mI~~isp~ 313 (483)
||||||||..++++.|.+++|+.+||+||++||+||.+|+++. +..|||||||||||||||+||||++|+|||||||+
T Consensus 233 VDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~--~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~ 310 (349)
T 1t5c_A 233 VDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQ--VGGFINYRDSKLTRILQNSLGGNAKTRIICTITPV 310 (349)
T ss_dssp EECCCGGGTC-------CCCSSSCCCHHHHHHHHHHHHHHHTC--CTTSSCGGGSHHHHHTGGGTTSSSEEEEEEEECTT
T ss_pred EECCCCccccccCCccccchhhhHHhHHHHHHHHHHHHHhccC--CCCCCcccccHHHHHHHHhcCCCceEEEEEEeCCC
Confidence 9999999999999999999999999999999999999999753 24699999999999999999999999999999997
Q ss_pred CCCHHHHHHHHHHHHHhcccccCCcccccccch
Q 047385 314 TSNSAESLSTLRFGTRAKHIKASPHAHCSKESN 346 (483)
Q Consensus 314 ~~~~~ETlsTL~fa~rak~I~~~~~~n~~~~~~ 346 (483)
+++||++||+||+|||+|+|+|++|+++...
T Consensus 311 --~~~ETlsTL~fA~rak~I~n~~~vn~~~~~~ 341 (349)
T 1t5c_A 311 --SFDETLTALQFASTAKYMKNTPYVNEVSTDE 341 (349)
T ss_dssp --CSHHHHHHHHHHHHHTTCCCCCCCCEEC---
T ss_pred --CHHHHHHHHHHHHHHhhcccCceeccCCCCC
Confidence 5899999999999999999999999887643
No 9
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=100.00 E-value=8.6e-94 Score=725.70 Aligned_cols=319 Identities=47% Similarity=0.733 Sum_probs=297.2
Q ss_pred CCeEEEEEeCCCCccccccCCCceEEEecCCceEEEeCCCCcceeEeecEEecCCCchHHHHHHHHHHHHHHhhcCcceE
Q 047385 2 SNITVCARFRPLSSKERSNHGDSVCIHGIDNESFIFKDDKEENFKFGFDRVFYEKSEQAEVFEFLALPIIRDAFNGMNGT 81 (483)
Q Consensus 2 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~t 81 (483)
++|+|+|||||+++.|...+. ..|+...+++++.+. .+.|.||+||+++++|++||+.+++|+|+++++|||+|
T Consensus 7 ~~i~V~vRvRP~~~~E~~~~~-~~~~~~~~~~~~~~~-----~~~f~FD~Vf~~~~sQ~~Vy~~~~~plv~~~l~G~n~t 80 (325)
T 1bg2_A 7 CNIKVMCRFRPLNESEVNRGD-KYIAKFQGEDTVVIA-----SKPYAFDRVFQSSTSQEQVYNDCAKKIVKDVLEGYNGT 80 (325)
T ss_dssp CEEEEEEEECCCCHHHHHHTC-CBCCEEETTTEEEET-----TEEEECSEEECTTCCHHHHHHHHTHHHHHHHHTTCCEE
T ss_pred CCEEEEEEcCCCChhHhccCC-eeEEEECCCCeEEEC-----CEEEECCeEeCCCCCHHHHHHHHhhhhHHHHhCCCeEE
Confidence 689999999999999987543 345555566666553 37899999999999999999999999999999999999
Q ss_pred EEeeCCCCCCccceecCCCCCCccccccCchhhhHHHHHHhhhcCCCCcEEEEEEeEEEEecceeecccCCCCCcceeee
Q 047385 82 VITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTVDELFDCMKSSDASVKFTIKLSMVEIYMEKVRDLFDLSRDNIQIKE 161 (483)
Q Consensus 82 i~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyne~v~DLL~~~~~~l~i~e 161 (483)
|||||||||||||||+|+.. ++..+|||||++++||+.+.......+|.|++||+|||||+|+|||++.+..+.+++
T Consensus 81 ifAYGqTGSGKTyTm~G~~~---~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~~~~l~i~e 157 (325)
T 1bg2_A 81 IFAYGQTSSGKTHTMEGKLH---DPEGMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHE 157 (325)
T ss_dssp EEEECSTTSSHHHHHTBSTT---CTTTBCHHHHHHHHHHHHHHHHCSSEEEEEEEEEEEEETTEEEESSCTTCCSBCEEE
T ss_pred EEEECCCCCCCceEecccCC---CcccCccHHHHHHHHHHHHHhccCCceEEEEEEEEEEecCeeeecccCCCCCceEEE
Confidence 99999999999999999653 345689999999999999987767889999999999999999999999888999999
Q ss_pred ccCCceEecCcEEEEecCHHHHHHHHHhhhhccCcccccCCCCCCCceEEEEEEEEEeecccceeEeeeeeeeeCCCCcc
Q 047385 162 SRVQGILLSGVTEIYVFNSAEALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQELTKEKRVKAGKLLLVDLAGSEK 241 (483)
Q Consensus 162 ~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~skL~~VDLAGsEr 241 (483)
++.++++|.|++++.|.|++|++++|..|.++|++++|.+|..|||||+||+|++.+..........|+|+|||||||||
T Consensus 158 ~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~skl~lVDLAGSEr 237 (325)
T 1bg2_A 158 DKNRVPYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGSEK 237 (325)
T ss_dssp CTTSCEEETTCCCEEECSHHHHHHHHHHHHHHTTTTCSCHHHHHHHSEEEEEEEEEEEETTTCCEEEEEEEEEECCCSCC
T ss_pred CCCCCEEecCceEEeCCCHHHHHHHHHHHHhhCceeecCCCCCCCCCeEEEEEEEEEEecCCCcEEEEEEEEEECCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999988777778899999999999999
Q ss_pred ccccCCchhhHHHHHHhhhhHHHHHHHHHHhccCCCCCCCCccCCCcccchhhhhccCCCcceeeeEeeCCCCCCHHHHH
Q 047385 242 AEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSPGKAFHIPYRDSKLTRILQDALGGNSRTALLCCCSPSTSNSAESL 321 (483)
Q Consensus 242 ~~~t~~~g~~~~E~~~IN~SL~aL~~vI~aL~~~~~~~~~~iPyRdSkLT~lLqdsLgGns~t~mI~~isp~~~~~~ETl 321 (483)
.+++++.|.+++|+.+||+||++||+||.||++ +..|||||||||||||||+||||++|+|||||||+..+++||+
T Consensus 238 ~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~----~~~hvPyRdSkLT~lLqdsLgGns~t~mia~vsP~~~~~~ETl 313 (325)
T 1bg2_A 238 VSKTGAEGAVLDEAKNINKSLSALGNVISALAE----GSTYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESETK 313 (325)
T ss_dssp CCCCSSSCTTSCCCCCCCHHHHHHHHHHHHHHT----TCSCCCGGGSHHHHHGGGTSSSSCEEEEEEEECCBGGGHHHHH
T ss_pred ccccCCccccchHHHHHHHHHHHHHHHHHHHHc----CCCCCcccccHHHHHHHHHhCCCCcEEEEEEECCccccHHHHH
Confidence 999999999999999999999999999999997 3579999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccc
Q 047385 322 STLRFGTRAKHI 333 (483)
Q Consensus 322 sTL~fa~rak~I 333 (483)
+||+||+|||+|
T Consensus 314 ~TL~fa~rak~I 325 (325)
T 1bg2_A 314 STLLFGQRAKTI 325 (325)
T ss_dssp HHHHHHHTSCCC
T ss_pred HHHHHHHHhccC
Confidence 999999999987
No 10
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=100.00 E-value=2.7e-93 Score=731.16 Aligned_cols=333 Identities=39% Similarity=0.611 Sum_probs=277.7
Q ss_pred CCeEEEEEeCCCCccccccCCCceEEEec-CCceEEEeC----CCCcceeEeecEEecCCCchHHHHHHHHHHHHHHhhc
Q 047385 2 SNITVCARFRPLSSKERSNHGDSVCIHGI-DNESFIFKD----DKEENFKFGFDRVFYEKSEQAEVFEFLALPIIRDAFN 76 (483)
Q Consensus 2 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~F~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~ 76 (483)
++|+|+|||||++..|...+. ..|+... +...+.+.. .....+.|+||+||+++++|++||+.++.|+|+++++
T Consensus 8 ~~i~V~vRvRP~~~~E~~~~~-~~~v~~~~~~~~v~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~ 86 (359)
T 1x88_A 8 KNIQVVVRCRPFNLAERKASA-HSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQIDVYRSVVCPILDEVIM 86 (359)
T ss_dssp -CCEEEEEECCCCHHHHHTTC-CCCEEEETTTTEEEEEEEEETTEEEEEEEECSEEECTTCCHHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEEEeCCCChhhhhcCC-ceEEEEcCCCcEEEEeCCCccCCcCceEEeceEEEeccCchhHHHHHHHHHhHHHHhC
Confidence 689999999999999986543 3333332 333444432 2234679999999999999999999999999999999
Q ss_pred CcceEEEeeCCCCCCccceecCCCCCCc-----cccccCchhhhHHHHHHhhhcCCCCcEEEEEEeEEEEecceeecccC
Q 047385 77 GMNGTVITYGQTGAGKTFSMEGPSILAC-----DEQKKGLLQRTVDELFDCMKSSDASVKFTIKLSMVEIYMEKVRDLFD 151 (483)
Q Consensus 77 G~n~ti~ayG~tgSGKT~Tm~G~~~~~~-----~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyne~v~DLL~ 151 (483)
|||+||||||||||||||||+|+..... ..+.+|||||++++||+.+... ..+|.|+|||+|||||+|+|||+
T Consensus 87 G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~~~~~~~Giipr~~~~lF~~i~~~--~~~~~v~vS~~EIYnE~i~DLL~ 164 (359)
T 1x88_A 87 GYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPRTLHQIFEKLTDN--GTEFSVKVSLLEIYNEELFDLLN 164 (359)
T ss_dssp TCEEEEEEEECTTSSHHHHHTBCCCGGGCSCGGGCTTBCHHHHHHHHHHHHTSSS--SEEEEEEEEEEEEETTEEEETTC
T ss_pred CCceEEEEeCCCCCCCceEEeccCCccccccccccccCCchHHHHHHHHHHHhcc--CceEEEEEEEEEEeCceeeehhc
Confidence 9999999999999999999999754211 1234799999999999999764 57999999999999999999998
Q ss_pred CCC---Ccceeeecc--CCceEecCcEEEEecCHHHHHHHHHhhhhccCcccccCCCCCCCceEEEEEEEEEeec---cc
Q 047385 152 LSR---DNIQIKESR--VQGILLSGVTEIYVFNSAEALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQELT---KE 223 (483)
Q Consensus 152 ~~~---~~l~i~e~~--~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~---~~ 223 (483)
+.. ..+.+++++ .++++|.||+++.|.|++|++++|..|.++|++++|.||..|||||+||+|+|.+... +.
T Consensus 165 ~~~~~~~~l~i~~~~~~~~~v~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~i~~~~~~~~~~ 244 (359)
T 1x88_A 165 PSSDVSERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGE 244 (359)
T ss_dssp TTSCTTCCBEEEEETTEEEEEEEETCCCEEECSGGGHHHHHHHHHHHHHHHHHHSTTHHHHCEEEEEEEEEEEEECTTSC
T ss_pred ccccccccceEEeccCCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccccCCCCCCCccEEEEEEEEEecccCCCC
Confidence 765 368999987 4789999999999999999999999999999999999999999999999999987643 23
Q ss_pred ceeEeeeeeeeeCCCCccccccCCchhhHHHHHHhhhhHHHHHHHHHHhccCCCCCCCCccCCCcccchhhhhccCCCcc
Q 047385 224 KRVKAGKLLLVDLAGSEKAEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSPGKAFHIPYRDSKLTRILQDALGGNSR 303 (483)
Q Consensus 224 ~~~~~skL~~VDLAGsEr~~~t~~~g~~~~E~~~IN~SL~aL~~vI~aL~~~~~~~~~~iPyRdSkLT~lLqdsLgGns~ 303 (483)
.....|+|+|||||||||..++++.|.+++|+.+||+||++||+||.||++ +..|||||||||||||||+||||++
T Consensus 245 ~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~----~~~hvPyRdSkLT~lLqdsLgGnsk 320 (359)
T 1x88_A 245 ELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE----RTPHVPYRESKLTRILQDSLGGRTR 320 (359)
T ss_dssp EEEEEEEEEEEECCCCCC---------------CCCHHHHHHHHHHHHHHT----TCSCCCGGGSHHHHHTGGGSSSSSE
T ss_pred ceEEEEEEEEEcCCCCCcccccCCcccchHHHhhhhHHHHHHHHHHHHHhc----CCCCCccccchHHHHHHHHhCCCCe
Confidence 345789999999999999999999999999999999999999999999997 4579999999999999999999999
Q ss_pred eeeeEeeCCCCCCHHHHHHHHHHHHHhcccccCCcccc
Q 047385 304 TALLCCCSPSTSNSAESLSTLRFGTRAKHIKASPHAHC 341 (483)
Q Consensus 304 t~mI~~isp~~~~~~ETlsTL~fa~rak~I~~~~~~n~ 341 (483)
|+|||||||+..+++||++||+||+|||+|+|+|.+|+
T Consensus 321 t~mIa~vsP~~~~~~ETl~TLrfA~rak~I~n~p~vn~ 358 (359)
T 1x88_A 321 TSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 358 (359)
T ss_dssp EEEEEEECCCGGGHHHHHHHHHHHHHHTTCCCCCC---
T ss_pred EEEEEEECCCcccHHHHHHHHHHHHHHhhccCcceeCC
Confidence 99999999999999999999999999999999999985
No 11
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=9.2e-93 Score=726.16 Aligned_cols=323 Identities=39% Similarity=0.621 Sum_probs=263.8
Q ss_pred CCeEEEEEeCCCCccccccCCCceEEEecCCceEEEeCCC--------------------CcceeEeecEEecCCCchHH
Q 047385 2 SNITVCARFRPLSSKERSNHGDSVCIHGIDNESFIFKDDK--------------------EENFKFGFDRVFYEKSEQAE 61 (483)
Q Consensus 2 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~F~FD~Vf~~~~~Q~~ 61 (483)
++|+|+|||||++.+|+..+ ...|+...++..+++.++. ..+..|.||+||+++++|++
T Consensus 10 ~~i~V~vRvRP~~~~E~~~~-~~~~v~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~vf~~~~~Q~~ 88 (355)
T 3lre_A 10 HHMKVVVRVRPENTKEKAAG-FHKVVHVVDKHILVFDPKQEEVSFFHGKKTTNQNVIKKQNKDLKFVFDAVFDETSTQSE 88 (355)
T ss_dssp --CEEEEEECCCCHHHHHTT-CCBSEEECSSSEEEEC------------------------CCEEEECSEEECTTCCHHH
T ss_pred CCCEEEEEeCcCChHHHhcC-CceEEEecCCceEEecCCCCcceeecccccccccchhccCCCceEEeceEECCCCChHH
Confidence 68999999999999998754 4456666666655543321 13458999999999999999
Q ss_pred HHHHHHHHHHHHhhcCcceEEEeeCCCCCCccceecCCCCCCccccccCchhhhHHHHHHhhhcCCCCcEEEEEEeEEEE
Q 047385 62 VFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTVDELFDCMKSSDASVKFTIKLSMVEI 141 (483)
Q Consensus 62 vf~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EI 141 (483)
||+.++.|+|+++++|||+||||||||||||||||+|++ .++|||||++++||+.+........|.|+|||+||
T Consensus 89 Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~------~~~Giipr~~~~lf~~i~~~~~~~~~~v~vS~~EI 162 (355)
T 3lre_A 89 VFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGSA------DEPGVMYLTMLHLYKCMDEIKEEKICSTAVSYLEV 162 (355)
T ss_dssp HHHTTHHHHHHHHTTTCCEEEEEECCTTSSHHHHHTBCS------SSBCHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCceEEEEeCCCCCCceeeeccCC------CCCCeeehhhhHHHHhhhhhccCceEEEEEEEEEE
Confidence 999999999999999999999999999999999999954 56899999999999999987777899999999999
Q ss_pred ecceeecccCCCCCcceeeeccCCceEecCcEEEEecCHHHHHHHHHhhhhccCcccccCCCCCCCceEEEEEEEEEeec
Q 047385 142 YMEKVRDLFDLSRDNIQIKESRVQGILLSGVTEIYVFNSAEALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQELT 221 (483)
Q Consensus 142 yne~v~DLL~~~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~ 221 (483)
|||+|+|||++. .++.+++++.++++|.|++++.|.|++|++++|..|.++|++++|.||..|||||+||+|++.+...
T Consensus 163 YnE~i~DLL~~~-~~l~ire~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~ 241 (355)
T 3lre_A 163 YNEQIRDLLVNS-GPLAVREDTQKGVVVHGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHAVFQIYLRQQDK 241 (355)
T ss_dssp ETTEEEESSSCC-CCBEEEECTTSCEEEETCCCBCCCSHHHHHHHHHHHHHTSCBC-----CBCTTCEEEEEEEEEEEET
T ss_pred ECCEEEECcCCC-CCceeEEcCCCCEEeeeeeEEecCCHHHHHHHHHHHHhcCCcccccCcCCCCCCcEEEEEEEEEecC
Confidence 999999999865 4799999999999999999999999999999999999999999999999999999999999998764
Q ss_pred c---cceeEeeeeeeeeCCCCccccccCCchhhHHHHHHhhhhHHHHHHHHHHhccCCCCCCCCccCCCcccchhhhhcc
Q 047385 222 K---EKRVKAGKLLLVDLAGSEKAEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSPGKAFHIPYRDSKLTRILQDAL 298 (483)
Q Consensus 222 ~---~~~~~~skL~~VDLAGsEr~~~t~~~g~~~~E~~~IN~SL~aL~~vI~aL~~~~~~~~~~iPyRdSkLT~lLqdsL 298 (483)
. ......|+|+|||||||||..++++.|.+++|+.+||+||++||+||.||+++. ++..|||||||||||||||+|
T Consensus 242 ~~~~~~~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~-~~~~hiPyRdSkLT~lL~dsL 320 (355)
T 3lre_A 242 TASINQNVRIAKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNVINALADSK-RKNQHIPYRNSKLTRLLKDSL 320 (355)
T ss_dssp TSCTTCCCCCEEEEEEECCCCCC-----------------CHHHHHHHHHHHHHC---------CCGGGSHHHHHTTTTS
T ss_pred CCCCCCCEEEEEEEEEECCCCCcCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCCcCCcccCHHHHHHHHhc
Confidence 3 334567999999999999999999999999999999999999999999999743 245799999999999999999
Q ss_pred CCCcceeeeEeeCCCCCCHHHHHHHHHHHHHhccc
Q 047385 299 GGNSRTALLCCCSPSTSNSAESLSTLRFGTRAKHI 333 (483)
Q Consensus 299 gGns~t~mI~~isp~~~~~~ETlsTL~fa~rak~I 333 (483)
||||+|+|||||||+..+++||++||+||+|||+|
T Consensus 321 gGnskt~mIa~isP~~~~~~ETl~TL~fA~rak~I 355 (355)
T 3lre_A 321 GGNCQTIMIAAVSPSSVFYDDTYNTLKYANRAKDI 355 (355)
T ss_dssp STTSEEEEEEEECCBGGGHHHHHHHHHHHHHTC--
T ss_pred CCCceEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999986
No 12
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=100.00 E-value=3.3e-92 Score=739.55 Aligned_cols=330 Identities=35% Similarity=0.585 Sum_probs=274.7
Q ss_pred CCeEEEEEeCCCCccccccCCCceEEEecCC--ceEEEeCCC---------------CcceeEeecEEecC-------CC
Q 047385 2 SNITVCARFRPLSSKERSNHGDSVCIHGIDN--ESFIFKDDK---------------EENFKFGFDRVFYE-------KS 57 (483)
Q Consensus 2 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~--~~~~~~~~~---------------~~~~~F~FD~Vf~~-------~~ 57 (483)
++|+|+|||||+++.|...+. .|+..+++ ..+.+..+. ...+.|+||+||++ .+
T Consensus 38 ~~vrV~vRvRP~~~~E~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~F~FD~vF~~~~~~~~~~a 115 (443)
T 2owm_A 38 ANVRVVVRVRAFLPRELERNA--ECIVEMDPATERTSLLVPQETDFADARGARSRRVLEEKSFTFDKSFWSHNTEDEHYA 115 (443)
T ss_dssp EECEEEEEEECCCHHHHHTTC--CCCEEECSSSCEEEECCCC---------------CCCEEEECSEEEEESCTTSTTCC
T ss_pred CCeEEEEEeCCCChHHhhcCC--ceEEEEcCCCccEEEecCCCcccccccccccccccCCceEecCeEeCCCCcCCccCC
Confidence 589999999999999976443 34444433 233333221 13578999999976 48
Q ss_pred chHHHHHHHHHHHHHHhhcCcceEEEeeCCCCCCccceecCCCCCCccccccCchhhhHHHHHHhhhcC---CCCcEEEE
Q 047385 58 EQAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTVDELFDCMKSS---DASVKFTI 134 (483)
Q Consensus 58 ~Q~~vf~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~i~~~---~~~~~~~v 134 (483)
+|++||+.++.|+|+++++|||+||||||||||||||||+|++ +++|||||++++||+.+... .....|.|
T Consensus 116 sQ~~Vy~~~~~plv~~~l~GyN~tIfAYGQTGSGKTyTM~G~~------~~~GIipr~~~~lF~~i~~~~~~~~~~~~~V 189 (443)
T 2owm_A 116 TQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMGTP------DQPGLIPRTCEDLFQRIASAQDETPNISYNV 189 (443)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCEEEEEESSTTSSHHHHHTCCT------TSCCHHHHHHHHHHHHHHHTTTTSTTCEEEE
T ss_pred CHHHHHHhhhhhHHHHhhcCCceEEEEeCCCCCCCCEEeecCC------CCCchHHHHHHHHHHHHHhhhcccCCceEEE
Confidence 9999999999999999999999999999999999999999954 56899999999999999764 34689999
Q ss_pred EEeEEEEecceeecccCCCC-----CcceeeeccCCceEecCcEEEEecCHHHHHHHHHhhhhccCcccccCCCCCCCce
Q 047385 135 KLSMVEIYMEKVRDLFDLSR-----DNIQIKESRVQGILLSGVTEIYVFNSAEALQSLASGISNRAVGETQMNMASSRSH 209 (483)
Q Consensus 135 ~vS~~EIyne~v~DLL~~~~-----~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH 209 (483)
+|||+|||||+|+|||++.. ..+.+++++.+|++|.||+++.|.|++|++++|..|.++|++++|.||..|||||
T Consensus 190 ~vS~lEIYnE~i~DLL~~~~~~~~~~~l~ire~~~~g~~V~gl~e~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH 269 (443)
T 2owm_A 190 KVSYFEVYNEHVRDLLAPVVPNKPPYYLKVRESPTEGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMNDTSSRSH 269 (443)
T ss_dssp EEEEEEEETTEEEETTSCCCSSCCCCCCEEEEETTTEEEEETCCCEECCSHHHHHHHHHHHHTTSCBCSSSSSCBCTTEE
T ss_pred EEEEEEEECCEeeEccCccccCCcccccceeECCCCCEeccCCEEEEcCCHHHHHHHHHHHHhhCCcccCcCCCccCCCe
Confidence 99999999999999998732 3599999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEEEeec----ccceeEeeeeeeeeCCCCccccccCCchhhHHHHHHhhhhHHHHHHHHHHhccCCCC-------
Q 047385 210 CIYIFTVQQELT----KEKRVKAGKLLLVDLAGSEKAEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSPG------- 278 (483)
Q Consensus 210 ~if~i~v~~~~~----~~~~~~~skL~~VDLAGsEr~~~t~~~g~~~~E~~~IN~SL~aL~~vI~aL~~~~~~------- 278 (483)
+||+|+|.+... .......|+|+|||||||||.+++++.|.+++|+.+||+||++||+||.||++....
T Consensus 270 ~Ifti~v~~~~~~~~~~~~~~~~skL~lVDLAGSER~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~~~~~~~~~~ 349 (443)
T 2owm_A 270 AVFTIMLKQIHHDLETDDTTERSSRIRLVDLAGSERAKSTEATGQRLREGSNINKSLTTLGRVIAALADPKSSASRPSSP 349 (443)
T ss_dssp EEEEEEEEEEC-------CCEEEEEEEEEECCCCCC--------------CCSSHHHHHHHHHHHHHCC-----------
T ss_pred EEEEEEEEEeecccCCCCcceEEEEEEEEECCCCccccccCCccccccchhhhcHHHHHHHHHHHHHhcccccccccccc
Confidence 999999988642 233457899999999999999999999999999999999999999999999875321
Q ss_pred -----------CCCCccCCCcccchhhhhccCCCcceeeeEeeCCCCCCHHHHHHHHHHHHHhcccccCCcccc
Q 047385 279 -----------KAFHIPYRDSKLTRILQDALGGNSRTALLCCCSPSTSNSAESLSTLRFGTRAKHIKASPHAHC 341 (483)
Q Consensus 279 -----------~~~~iPyRdSkLT~lLqdsLgGns~t~mI~~isp~~~~~~ETlsTL~fa~rak~I~~~~~~n~ 341 (483)
+..|||||||||||||||+||||++|+|||||||+ +++||++||+||+|||+|+|+|++|+
T Consensus 350 ~~~g~~~~~~~~~~hVPYRdSkLTrLLqdsLgGnskT~mIa~iSP~--~~~ETlsTLrfA~rak~I~n~~~vN~ 421 (443)
T 2owm_A 350 VKSGRGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTAMIACISPT--DYDETLSTLRYADQAKRIRTRAVVNQ 421 (443)
T ss_dssp --------------CCCGGGSHHHHHSTTTTTSSCEEEEEEEECSS--CHHHHHHHHHHHHHHTTCEECCCCCC
T ss_pred cccccccccccCCCcccCcccHhHHHHHHhhCCCCcEEEEEEeccc--cHHHHHHHHHHHHHHhhccccceecc
Confidence 23599999999999999999999999999999997 59999999999999999999999998
No 13
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=100.00 E-value=6.3e-92 Score=713.43 Aligned_cols=322 Identities=37% Similarity=0.583 Sum_probs=279.7
Q ss_pred CCeEEEEEeCCCCccccccCCCceEEE-ecCCceEEEeCCCCcceeEeecEEecCCCchHHHHHHHHHHHHHHhhcCcce
Q 047385 2 SNITVCARFRPLSSKERSNHGDSVCIH-GIDNESFIFKDDKEENFKFGFDRVFYEKSEQAEVFEFLALPIIRDAFNGMNG 80 (483)
Q Consensus 2 ~~i~V~vRvRP~~~~E~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ 80 (483)
++|+|+|||||++..|........|+. ..++..++...+....+.|.||+||+++++|++||+. +.|+|+.+++|||+
T Consensus 4 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~-v~~lv~~~l~G~n~ 82 (330)
T 2h58_A 4 GNIRVIARVRPVTKEDGEGPEATNAVTFDADDDSIIHLLHKGKPVSFELDKVFSPQASQQDVFQE-VQALVTSCIDGFNV 82 (330)
T ss_dssp -CEEEEEEECCCCGGGCSSGGGSBCEEECSSCTTEEEEEETTEEEEEECSEEECTTCCHHHHHTT-THHHHHHHHTTCCE
T ss_pred CCEEEEEEcCCCChhhcccCCCccEEEEeCCCCcEEEEcCCCCeeEEecCeEeCCCCCcHhHHHH-HHHHHHHHhCCCEE
Confidence 789999999999999865322222222 2233333333334567899999999999999999998 58999999999999
Q ss_pred EEEeeCCCCCCccceecCCCCCCccccccCchhhhHHHHHHhhhcCCCCcEEEEEEeEEEEecceeecccCCCC-Cccee
Q 047385 81 TVITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTVDELFDCMKSSDASVKFTIKLSMVEIYMEKVRDLFDLSR-DNIQI 159 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyne~v~DLL~~~~-~~l~i 159 (483)
||||||||||||||||+|++ +++|||||++++||+.++.......|.|++||+|||||+|+|||++.. ..+.+
T Consensus 83 tifAYGqTGSGKTyTm~G~~------~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~l~i 156 (330)
T 2h58_A 83 CIFAYGQTGAGKTYTMEGTA------ENPGINQRALQLLFSEVQEKASDWEYTITVSAAEIYNEVLRDLLGKEPQEKLEI 156 (330)
T ss_dssp EEEEESSTTSSHHHHHTBCS------SSBCHHHHHHHHHHHHHHTSCTTEEEEEEEEEEEEETTEEEETTSCSSCCCCCC
T ss_pred EEEeECCCCCCCcEEEecCC------CCCcHHHHHHHHHHHhhhcccCCceEEEEEEEEEEECCChhhcccccccccceE
Confidence 99999999999999999954 568999999999999998877788999999999999999999998654 34444
Q ss_pred e--eccCCceEecCcEEEEecCHHHHHHHHHhhhhccCcccccCCCCCCCceEEEEEEEEEeecccceeEeeeeeeeeCC
Q 047385 160 K--ESRVQGILLSGVTEIYVFNSAEALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQELTKEKRVKAGKLLLVDLA 237 (483)
Q Consensus 160 ~--e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~skL~~VDLA 237 (483)
+ +++.++++|.|++++.|.|++|++++|..|.++|++++|.||..|||||+||+|++++.....+....|+|+|||||
T Consensus 157 ~~~~~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~skL~lVDLA 236 (330)
T 2h58_A 157 RLCPDGSGQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCSTGLRTTGKLNLVDLA 236 (330)
T ss_dssp EECTTSSCCEECTTCCCEEECSHHHHHHHHHHHHHHTTCTTCCSCSCGGGSEEEEEEEEEEEETTTTEEEEEEEEEEECC
T ss_pred EEeecCCCCEecCCCEEEEeCCHHHHHHHHHHHHhhCCcccccCCCCcCCccEEEEEEEEEEecCCCcEEEEEEEEEeCC
Confidence 4 68889999999999999999999999999999999999999999999999999999998877777889999999999
Q ss_pred CCccccccCCchhhHHHHHHhhhhHHHHHHHHHHhccCCCCCCCCccCCCcccchhhhhccCCCcceeeeEeeCCCCCCH
Q 047385 238 GSEKAEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSPGKAFHIPYRDSKLTRILQDALGGNSRTALLCCCSPSTSNS 317 (483)
Q Consensus 238 GsEr~~~t~~~g~~~~E~~~IN~SL~aL~~vI~aL~~~~~~~~~~iPyRdSkLT~lLqdsLgGns~t~mI~~isp~~~~~ 317 (483)
||||..++++.|.+++|+.+||+||++||+||.||++ +..|||||||||||||||+||||++|+|||||||+..++
T Consensus 237 GSEr~~~t~~~g~r~~E~~~IN~SL~aLg~vI~aL~~----~~~hvPyRdSkLT~lL~dsLgGns~t~mI~~isP~~~~~ 312 (330)
T 2h58_A 237 GSERVGKSGAEGSRLREAQHINKSLSALGDVIAALRS----RQGHVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNT 312 (330)
T ss_dssp CCCCCC------HHHHHHHHHHHHHHHHHHHHHHHHT----TCSCCCGGGSHHHHHTHHHHSTTCEEEEEEEECCBGGGH
T ss_pred CCCcccccCCchhhhHHHHHhhHhHHHHHHHHHHHhc----CCCCCcccccHHHHHHHHHhCCCceEEEEEEeCCccccH
Confidence 9999999999999999999999999999999999987 457999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccc
Q 047385 318 AESLSTLRFGTRAKHIK 334 (483)
Q Consensus 318 ~ETlsTL~fa~rak~I~ 334 (483)
+||++||+||+|||+|+
T Consensus 313 ~ETl~TL~fA~rak~i~ 329 (330)
T 2h58_A 313 SETLYSLKFAERVRSVE 329 (330)
T ss_dssp HHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHhhCc
Confidence 99999999999999986
No 14
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=100.00 E-value=1.7e-92 Score=728.14 Aligned_cols=335 Identities=37% Similarity=0.603 Sum_probs=281.9
Q ss_pred CCeEEEEEeCCCCccccccCCCceEEEecCCceEEEeCC--CCcceeEeecEEecCCCchHHHHHHHHHHHHHHhhcCcc
Q 047385 2 SNITVCARFRPLSSKERSNHGDSVCIHGIDNESFIFKDD--KEENFKFGFDRVFYEKSEQAEVFEFLALPIIRDAFNGMN 79 (483)
Q Consensus 2 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~F~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n 79 (483)
++|+|+|||||++..|...+ ...|+...++..+.+.++ ....+.|+||+||+++++|++||+.++.|+|+++++|||
T Consensus 23 ~~i~V~vRvRP~~~~E~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~F~FD~vf~~~~~Q~~Vy~~~~~plv~~~l~G~n 101 (373)
T 2wbe_C 23 QNIQVYVRVRPLNSRERCIR-SAEVVDVVGPREVVTRHTLDSKLTKKFTFDRSFGPESKQCDVYSVVVSPLIEEVLNGYN 101 (373)
T ss_dssp EECEEEEEECCCCHHHHHHT-CCBCEEEETTTEEEESSSSSSTTCEEEECSEEECTTCCHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCeEEEEEcCCCChhhhccC-CCceEEEcCCCeEEEecCCCCCCceEEeccEEeccccchhHHHHHHHHHHHHHHhCCce
Confidence 58999999999999997643 344666667777666543 234689999999999999999999999999999999999
Q ss_pred eEEEeeCCCCCCccceecCCCCCC-----ccccccCchhhhHHHHHHhhhcCCCCcEEEEEEeEEEEecceeecccCCCC
Q 047385 80 GTVITYGQTGAGKTFSMEGPSILA-----CDEQKKGLLQRTVDELFDCMKSSDASVKFTIKLSMVEIYMEKVRDLFDLSR 154 (483)
Q Consensus 80 ~ti~ayG~tgSGKT~Tm~G~~~~~-----~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyne~v~DLL~~~~ 154 (483)
+||||||||||||||||+|+.... .+..++|||||++++||+.+... ..+|.|++||+|||||+|+|||++..
T Consensus 102 ~tifAYGqTGSGKTyTm~G~~~~~~~~~~~~~~~~Giipr~~~~lF~~i~~~--~~~~~v~vS~~EIYnE~i~DLL~~~~ 179 (373)
T 2wbe_C 102 CTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDIGIIPRALSHLFDELRMM--EVEYTMRISYLELYNEELCDLLSTDD 179 (373)
T ss_dssp EEEEEECSTTSSHHHHHTBSCSCCSSSCSSCTTTBCHHHHHHHHHHHHHHHC--CSCEEEEEEEEEEETTEEEESSCTTS
T ss_pred EEEEeecCCCCCcceecccCccccccccccccCCCcChHHHHHHHHHHHHhc--CceEEEEEEEEEEeCCeEEECCCCCC
Confidence 999999999999999999976421 12457899999999999999875 35899999999999999999998764
Q ss_pred -Ccceeeecc--CCceEecCcEEEEecCHHHHHHHHHhhhhccCcccccCCCCCCCceEEEEEEEEEeec---ccceeEe
Q 047385 155 -DNIQIKESR--VQGILLSGVTEIYVFNSAEALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQELT---KEKRVKA 228 (483)
Q Consensus 155 -~~l~i~e~~--~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~---~~~~~~~ 228 (483)
..+.+++++ .++++|.||+++.|.|++|++++|..|.++|++++|.||..|||||+||+|+|.+... .......
T Consensus 180 ~~~l~i~~~~~~~g~v~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~~ 259 (373)
T 2wbe_C 180 TTKIRIFDDSTKKGSVIIQGLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHIRENGIEGEDMLKI 259 (373)
T ss_dssp CSCCCEEECSSSSSCEEETTCCCEEESSHHHHHHHHHHHHHHHTTTCSCHHHHHHHSEEEEEEEEEECTTCTTTCCEEEE
T ss_pred CCCceeEeccCCCCcEEecCceEEccCCHHHHHHHHHHHhhhhccccccCCCCCCCccEEEEEEEEEecCCCCCCcceeE
Confidence 467888874 5789999999999999999999999999999999999999999999999999987643 2334578
Q ss_pred eeeeeeeCCCCccccccCCc-hhhHHHHHHhhhhHHHHHHHHHHhccCCCCCCCCccCCCcccchhhhhccCCCcceeee
Q 047385 229 GKLLLVDLAGSEKAEKTGAE-GKVLEEAKTINKSLSALGNVISALTCGSPGKAFHIPYRDSKLTRILQDALGGNSRTALL 307 (483)
Q Consensus 229 skL~~VDLAGsEr~~~t~~~-g~~~~E~~~IN~SL~aL~~vI~aL~~~~~~~~~~iPyRdSkLT~lLqdsLgGns~t~mI 307 (483)
|+|+|||||||||..++++. |.+++|+.+||+||++||+||.||++ +..|||||||||||||||+||||++|+||
T Consensus 260 skL~lVDLAGSEr~~~t~~~~g~rl~E~~~INkSL~aLg~vI~aL~~----~~~hvPyRdSkLT~lLqdsLgGnskt~mI 335 (373)
T 2wbe_C 260 GKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVD----RAPHVPYRESKLTRLLQESLGGRTKTSII 335 (373)
T ss_dssp EEEEEEECCCC--------------------CHHHHHHHHHHHHHHH----CSSCCCGGGCHHHHHTHHHHHSSSEEEEE
T ss_pred EEEEEEECCCCCccccccCccccchhHHHHHHHHHHHHHHHHHHHHc----CCCcCccccchHHHHHHHHhCCCceEEEE
Confidence 99999999999999999987 99999999999999999999999997 45799999999999999999999999999
Q ss_pred EeeCCCCCCHHHHHHHHHHHHHhcccccCCcccccc
Q 047385 308 CCCSPSTSNSAESLSTLRFGTRAKHIKASPHAHCSK 343 (483)
Q Consensus 308 ~~isp~~~~~~ETlsTL~fa~rak~I~~~~~~n~~~ 343 (483)
|||||+..+++||++||+||+|||+|+|+|++|+..
T Consensus 336 a~isP~~~~~~ETlsTLrfA~rak~I~n~p~vN~~~ 371 (373)
T 2wbe_C 336 ATISPGHKDIEETLSTLEYAHRAKNIQNKPEVNQKL 371 (373)
T ss_dssp EEECCBGGGHHHHHHHHHHHHHHHTCEECCCCCEEC
T ss_pred EEeCCCcccHHHHHHHHHHHHHHhhccccceecccc
Confidence 999999999999999999999999999999999764
No 15
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=100.00 E-value=1.1e-91 Score=716.33 Aligned_cols=324 Identities=38% Similarity=0.603 Sum_probs=268.1
Q ss_pred CCeEEEEEeCCCCccccccCCCceEEEecCCceEEEeCCCCcceeEeecEEecCCCchHHHHHHHHHHHHHHhhcCcceE
Q 047385 2 SNITVCARFRPLSSKERSNHGDSVCIHGIDNESFIFKDDKEENFKFGFDRVFYEKSEQAEVFEFLALPIIRDAFNGMNGT 81 (483)
Q Consensus 2 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~t 81 (483)
++|+|+|||||+++.|...+ ...|+...++...+... .++.|.||+||+++++|++||+.++.|+|+++++|||+|
T Consensus 11 ~~i~V~vRvRP~~~~E~~~~-~~~~~~~~~~~~~~~~~---~~~~f~FD~Vf~~~~~Q~~vy~~~~~plv~~~l~G~n~t 86 (344)
T 4a14_A 11 APVRVALRVRPLLPKELLHG-HQSCLQVEPGLGRVTLG---RDRHFGFHVVLAEDAGQEAVYQACVQPLLEAFFEGFNAT 86 (344)
T ss_dssp CCCEEEEEECCCCHHHHHTT-CCBCEEEEGGGTEEEET---TTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHTTCCEE
T ss_pred cceEEEEEecccchHHHhcc-CeeEEEEcCCCceEEec---ccceEEEEEEEecCcchhHHHHHHHHHHHHHHHhhcCee
Confidence 68999999999999997643 45677665544433332 458999999999999999999999999999999999999
Q ss_pred EEeeCCCCCCccceecCCCCCCccccccCchhhhHHHHHHhhhcCCCCcEEEEEEeEEEEecceeecccCCC--CCccee
Q 047385 82 VITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTVDELFDCMKSSDASVKFTIKLSMVEIYMEKVRDLFDLS--RDNIQI 159 (483)
Q Consensus 82 i~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyne~v~DLL~~~--~~~l~i 159 (483)
|||||||||||||||+|++.....++++|||||++++||+.++.. ...+|.|++||+|||||+|+|||++. ...+.+
T Consensus 87 ifAYGqTGSGKTyTm~G~~~~~~~~~~~Giipr~~~~lF~~i~~~-~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~l~i 165 (344)
T 4a14_A 87 VFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAEAFKLIDEN-DLLDCLVHVSYLEVYKEEFRDLLEVGTASRDIQL 165 (344)
T ss_dssp EEEESSTTSSHHHHHCC--------CCCCHHHHHHHHHHHHHHHC-TTSEEEEEEEEEEEETTEEEETTSSCCCGGGCEE
T ss_pred EEEecccCCCceEeecccchhhhhhcccCCchHHHHHHHHhcccc-cceeeEEEEehhhhhHHHHHHHHHhcccccccee
Confidence 999999999999999997543333567999999999999999876 56799999999999999999999854 457999
Q ss_pred eeccCCceEecCcEEEEecCHHHHHHHHHhhhhccCcccccCCCCCCCceEEEEEEEEEeec--------ccceeEeeee
Q 047385 160 KESRVQGILLSGVTEIYVFNSAEALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQELT--------KEKRVKAGKL 231 (483)
Q Consensus 160 ~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~--------~~~~~~~skL 231 (483)
++++.++++|.|++++.|.|++|++++|..|.++|++++|.||..|||||+||+|+|++... .......|+|
T Consensus 166 ~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~skl 245 (344)
T 4a14_A 166 REDERGNVVLCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPSRLPRPAPGQLLVSKF 245 (344)
T ss_dssp EECTTSCEEEESCCCEECCSHHHHHHHHHHHHHHHHC------CCGGGSEEEEEEEEEEEC------------CEEEEEE
T ss_pred eeccCCCEEEEeeeeccccCHHHHHHHHHhcchhcccCcchhhhcccccceEEEEEeeeCCCCcccCCCccccceeeeee
Confidence 99999999999999999999999999999999999999999999999999999999998743 2234578999
Q ss_pred eeeeCCCCccccccCCchhhHHHHHHhhhhHHHHHHHHHHhccCCCCCCCCccCCCcccchhhhhccCCCcceeeeEeeC
Q 047385 232 LLVDLAGSEKAEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSPGKAFHIPYRDSKLTRILQDALGGNSRTALLCCCS 311 (483)
Q Consensus 232 ~~VDLAGsEr~~~t~~~g~~~~E~~~IN~SL~aL~~vI~aL~~~~~~~~~~iPyRdSkLT~lLqdsLgGns~t~mI~~is 311 (483)
+|||||||||..++++.|.+++|+.+||+||++||+||.+|+++. ++..|||||||||||||||+||||++|+||||||
T Consensus 246 ~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~-~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~vs 324 (344)
T 4a14_A 246 HFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGDPQ-RRGSHIPYRDSKITRILKDSLGGNAKTVMIACVS 324 (344)
T ss_dssp EEEECCCCCCC--------------CCCSHHHHHHHHHHHHTCTT-TTTSCCCGGGCHHHHHTTTSSSTTSEEEEEEEEC
T ss_pred eEEecccchhhcccCCchhhhhhheeechhHHhhhhHHHhcCCcc-ccCCCCCcchhhHHHHhHhhcCCCcceEEEEEeC
Confidence 999999999999999999999999999999999999999998743 3567999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhc
Q 047385 312 PSTSNSAESLSTLRFGTRAK 331 (483)
Q Consensus 312 p~~~~~~ETlsTL~fa~rak 331 (483)
|+..+++||++||+||+|||
T Consensus 325 P~~~~~~ETl~TL~fA~rAk 344 (344)
T 4a14_A 325 PSSSDFDETLNTLNYASRAQ 344 (344)
T ss_dssp CBGGGHHHHHHHHHHHHHTC
T ss_pred CCccchhHHhhhhhhhhhcC
Confidence 99999999999999999996
No 16
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=100.00 E-value=3.5e-91 Score=714.25 Aligned_cols=323 Identities=40% Similarity=0.646 Sum_probs=263.5
Q ss_pred CCeEEEEEeCCCCccccccCCCceEEEecCCceEEEeCCC---------CcceeEeecEEe--------cCCCchHHHHH
Q 047385 2 SNITVCARFRPLSSKERSNHGDSVCIHGIDNESFIFKDDK---------EENFKFGFDRVF--------YEKSEQAEVFE 64 (483)
Q Consensus 2 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~F~FD~Vf--------~~~~~Q~~vf~ 64 (483)
++|+|+|||||++++|...+ ..|+..++++.+++.++. ...+.|+||+|| ++.++|++||+
T Consensus 1 S~VkV~vRvRPl~~~E~~~~--~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~k~F~FD~vF~~~d~~~~~~~a~Q~~vy~ 78 (354)
T 3gbj_A 1 SKVKVAVRIRPMNRRETDLH--TKCVVDVDANKVILNPVNTNLSKGDARGQPKVFAYDHCFWSMDESVKEKYAGQDIVFK 78 (354)
T ss_dssp -CEEEEEEECCCCHHHHHHT--CCBCEEEETTEEEECCC-----------CCEEEECSEEEECSCTTCTTTBCCHHHHHH
T ss_pred CCcEEEEECCCCChhhhccC--CceEEEeCCCeEEEeCCccccccccccCCceEEEeeEEeccCccccccccccHHHHHH
Confidence 68999999999999998643 346666677777665432 245789999999 45688999999
Q ss_pred HHHHHHHHHhhcCcceEEEeeCCCCCCccceecCCCCCCccccccCchhhhHHHHHHhhhcC-CCCcEEEEEEeEEEEec
Q 047385 65 FLALPIIRDAFNGMNGTVITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTVDELFDCMKSS-DASVKFTIKLSMVEIYM 143 (483)
Q Consensus 65 ~~~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~i~~~-~~~~~~~v~vS~~EIyn 143 (483)
.++.|+|+.+++|||+||||||||||||||||+|+. +++|||||++++||+.+... .....|.|+|||+||||
T Consensus 79 ~~~~~lv~~~l~G~n~tifAYGqTGSGKTyTm~G~~------~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYn 152 (354)
T 3gbj_A 79 CLGENILQNAFDGYNACIFAYGQTGSGKSYTMMGTA------DQPGLIPRLCSGLFERTQKEENEEQSFKVEVSYMEIYN 152 (354)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEECTTSSHHHHHTBCS------SSBCHHHHHHHHHHHHHHHHCBTTEEEEEEEEEEEEET
T ss_pred HhhHHHHHHHhCCceeEEEeeCCCCCCCceEEecCC------CCCchhhHHHHHHHHHHHhhcccccceeeeceeEEEec
Confidence 999999999999999999999999999999999954 56899999999999998643 35678999999999999
Q ss_pred ceeecccCCCC--CcceeeeccCCceEecCcEEEEecCHHHHHHHHHhhhhccCcccccCCCCCCCceEEEEEEEEEeec
Q 047385 144 EKVRDLFDLSR--DNIQIKESRVQGILLSGVTEIYVFNSAEALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQELT 221 (483)
Q Consensus 144 e~v~DLL~~~~--~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~ 221 (483)
|+|+|||++.. ..+.+++++.+|++|.|++++.|.|++|++.+|..|.++|++++|.||..|||||+||+|++.+...
T Consensus 153 E~i~DLL~~~~~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~ 232 (354)
T 3gbj_A 153 EKVRDLLDPKGSRQTLKVREHSVLGPYVDGLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLY 232 (354)
T ss_dssp TEEEETTC------CBCBC------CCBTTCCCEEECSHHHHHHHHHHHHHCC----------CTTSEEEEEEEEEEEEE
T ss_pred CeeeEccCCCCCCcceEEEEcCCCCEEEEeeEEEecCCHHHHHHHHHHHHhcCCeeecCCCCCCCcccEEEEEEEEEEec
Confidence 99999998753 4799999999999999999999999999999999999999999999999999999999999988632
Q ss_pred ----ccceeEeeeeeeeeCCCCccccccCCchhhHHHHHHhhhhHHHHHHHHHHhccCCC--CCCCCccCCCcccchhhh
Q 047385 222 ----KEKRVKAGKLLLVDLAGSEKAEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSP--GKAFHIPYRDSKLTRILQ 295 (483)
Q Consensus 222 ----~~~~~~~skL~~VDLAGsEr~~~t~~~g~~~~E~~~IN~SL~aL~~vI~aL~~~~~--~~~~~iPyRdSkLT~lLq 295 (483)
.......|+|+|||||||||..++++.|++++|+.+||+||++||+||.||++.+. ++..||||||||||||||
T Consensus 233 ~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~~~~hvPyRdSkLT~lLq 312 (354)
T 3gbj_A 233 DVKSGTSGEKVGKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQSAGKNKNKFVPYRDSVLTWLLK 312 (354)
T ss_dssp CTTSCEEEEEEEEEEEEECCCCCCCCCCC------CHHHHHHHHHHHHHHHHHHHHHC------CCCCCGGGSHHHHHTH
T ss_pred ccCCCCCCeeEEEEEEEECCCCCchhhcCCccccchhHHHhhHHHHHHHHHHHHHHhhhcccCCCCcccccccHHHHHHH
Confidence 23345789999999999999999999999999999999999999999999987542 356799999999999999
Q ss_pred hccCCCcceeeeEeeCCCCCCHHHHHHHHHHHHHhcc
Q 047385 296 DALGGNSRTALLCCCSPSTSNSAESLSTLRFGTRAKH 332 (483)
Q Consensus 296 dsLgGns~t~mI~~isp~~~~~~ETlsTL~fa~rak~ 332 (483)
|+||||++|+|||||||+..+++|||+|||||.||+.
T Consensus 313 dsLgGnskt~mIa~vsP~~~~~~ETlsTLr~a~~~~~ 349 (354)
T 3gbj_A 313 DSLGGNSKTAMVATVSPAADNYDETLSTLRYADRAKH 349 (354)
T ss_dssp HHHSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHHC-
T ss_pred HHhCCCCeEEEEEEeCCCcchHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999986
No 17
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=100.00 E-value=2.4e-90 Score=707.32 Aligned_cols=325 Identities=30% Similarity=0.489 Sum_probs=267.6
Q ss_pred CCeEEEEEeCCCCccccccCCCceEEEecCC----ceEEEeCC--CCcceeEeecEEecCCCchHHHHHHHHHHHHHHhh
Q 047385 2 SNITVCARFRPLSSKERSNHGDSVCIHGIDN----ESFIFKDD--KEENFKFGFDRVFYEKSEQAEVFEFLALPIIRDAF 75 (483)
Q Consensus 2 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~----~~~~~~~~--~~~~~~F~FD~Vf~~~~~Q~~vf~~~~~plv~~~l 75 (483)
|||+|+|||||+++.|... ...+++...++ ..+.+..+ ....+.|+||+||+++++|++||+. +.|+|++++
T Consensus 5 gnIrV~vRvRP~~~~E~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~vf~~-v~~lv~~~l 82 (349)
T 3t0q_A 5 GNIRVYCRVRPPLLNEPQD-MSHILIEKFNEAKGAQSLTINRNEGRILSYNFQFDMIFEPSHTNKEIFEE-IRQLVQSSL 82 (349)
T ss_dssp CEEEEEEEECCCCTTSCCC-CTTEEECCCBC--CBEEEEEEECC--CEEEEEEESEEECTTCCHHHHHHH-HHHHHHGGG
T ss_pred CCcEEEEEeCCCCcccccc-CceEEEeeccCCCCceEEEEcCCCCcccceeeecCEEECCCccHHHHHHH-HHHHHHHHH
Confidence 7999999999999999764 34555543332 23444332 2345789999999999999999998 469999999
Q ss_pred cCcceEEEeeCCCCCCccceecCCCCCCccccccCchhhhHHHHHHhhhcC-CCCcEEEEEEeEEEEecceeecccCCCC
Q 047385 76 NGMNGTVITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTVDELFDCMKSS-DASVKFTIKLSMVEIYMEKVRDLFDLSR 154 (483)
Q Consensus 76 ~G~n~ti~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~i~~~-~~~~~~~v~vS~~EIyne~v~DLL~~~~ 154 (483)
+|||+||||||||||||||||+|+ .+|||||++++||+.+... ...+.|.|++||+|||||+|+|||++..
T Consensus 83 ~G~n~tifAYGqTGSGKTyTm~g~--------~~Giipr~~~~lF~~~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~ 154 (349)
T 3t0q_A 83 DGYNVCIFAYGQTGSGKTYTMLNA--------GDGMIPMTLSHIFKWTANLKERGWNYEMECEYIEIYNETILDLLRDFK 154 (349)
T ss_dssp TTCEEEEEEECSTTSSHHHHHHST--------TTSHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEETTC---
T ss_pred CCcceeEEEeCCCCCCCceEeCCC--------CCchhhHHHHHHHHHHHHhhhcCceeEEEEEEEEEEcchhhccccccc
Confidence 999999999999999999999994 3699999999999998763 3457999999999999999999998643
Q ss_pred -----------Ccceeeecc-CCceEecCcEEEEecCHHHHHHHHHhhhhccCcccccCCCCCCCceEEEEEEEEEeecc
Q 047385 155 -----------DNIQIKESR-VQGILLSGVTEIYVFNSAEALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQELTK 222 (483)
Q Consensus 155 -----------~~l~i~e~~-~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~ 222 (483)
..+.+++++ .+|++|.|++++.|.|++|++.+|..|.++|++++|.||..|||||+||+|+|++.+..
T Consensus 155 ~~~~~~~~~~~~~~~i~~~~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~ 234 (349)
T 3t0q_A 155 SHDNIDEILDSQKHDIRHDHEKQGTYITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHINGRNLH 234 (349)
T ss_dssp ------------CCCEEEETTTTEEEETTCCCEECCCHHHHHHHHHHC------------CTGGGSEEEEEEEEEEEETT
T ss_pred cccccccccccccceeEEecCCCCEEEeCCEEEEeCCHHHHHHHHHHHHHhCcccccccccccCCcceEEEEEEEEEecC
Confidence 356777775 46799999999999999999999999999999999999999999999999999998877
Q ss_pred cceeEeeeeeeeeCCCCccccccCCchhhHHHHHHhhhhHHHHHHHHHHhccCCCCCCCCccCCCcccchhhhhccCCCc
Q 047385 223 EKRVKAGKLLLVDLAGSEKAEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSPGKAFHIPYRDSKLTRILQDALGGNS 302 (483)
Q Consensus 223 ~~~~~~skL~~VDLAGsEr~~~t~~~g~~~~E~~~IN~SL~aL~~vI~aL~~~~~~~~~~iPyRdSkLT~lLqdsLgGns 302 (483)
.+....|+|+|||||||||..++++.|++++|+.+||+||++||+||.||++... +..|||||||||||||||+||||+
T Consensus 235 ~~~~~~~kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~-~~~hiPyRdSkLT~lLqdsLgGns 313 (349)
T 3t0q_A 235 TGETSQGKLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYALNTPDA-GKRYIPFRNSKLTYLLQYSLVGDS 313 (349)
T ss_dssp TCCEEEEEEEEEECCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHSTTG-GGSCCCGGGSHHHHHHGGGSSTTC
T ss_pred CCCeeEEEEEEEeCCCCCccccccCccccchhHHhhhHhHHHHHHHHHHHhcccC-CCCcCCCcCCHHHHHHHHhcCCCc
Confidence 7778899999999999999999999999999999999999999999999987432 346999999999999999999999
Q ss_pred ceeeeEeeCCCCCCHHHHHHHHHHHHHhcccccCC
Q 047385 303 RTALLCCCSPSTSNSAESLSTLRFGTRAKHIKASP 337 (483)
Q Consensus 303 ~t~mI~~isp~~~~~~ETlsTL~fa~rak~I~~~~ 337 (483)
+|+|||||||+..+++||++||+||+|+++|+..+
T Consensus 314 kt~mi~~vsP~~~~~~ETl~TL~fA~rv~~ik~~~ 348 (349)
T 3t0q_A 314 KTLMFVNIPPDPNHISETLNSLRFASKVNSTKIAK 348 (349)
T ss_dssp EEEEEEEECCCGGGHHHHHHHHHHHHHHHC-----
T ss_pred eEEEEEEeCCchhhHHHHHHHHHHHHHhhhcccCC
Confidence 99999999999999999999999999999998654
No 18
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=100.00 E-value=8.7e-91 Score=711.76 Aligned_cols=329 Identities=30% Similarity=0.462 Sum_probs=280.6
Q ss_pred CeEEEEEeCCCCccccccCCCceEEEecCCceEEEeCCCC--------cceeEeecEEecCCCchHHHHHHHHHHHHHHh
Q 047385 3 NITVCARFRPLSSKERSNHGDSVCIHGIDNESFIFKDDKE--------ENFKFGFDRVFYEKSEQAEVFEFLALPIIRDA 74 (483)
Q Consensus 3 ~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~F~FD~Vf~~~~~Q~~vf~~~~~plv~~~ 74 (483)
+|+|+|||||+++.|...+ ...|+...++.++.+..|.. ..+.|.||+||+++++|++||+.+++|+|+++
T Consensus 1 ~IrV~vRvRP~~~~E~~~~-~~~~v~~~~~~~i~i~~~~~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~Vy~~~~~plv~~~ 79 (360)
T 1ry6_A 1 MIKVVVRKRPLSELEKKKK-DSDIITVKNNCTLYIDEPRYKVDMTKYIERHEFIVDKVFDDTVDNFTVYENTIKPLIIDL 79 (360)
T ss_dssp CEEEEEEECCCCHHHHHTT-CCBCEEEEETTEEEEEEEEEETTTEEEEEEEEEECSEEECTTCCHHHHHHHHTHHHHHHH
T ss_pred CeEEEEECCCCChHHhccC-CceEEEECCCCEEEEeCCccccccccccccceEEeeeEecCCCCHHHHHHHHhhhhhhhh
Confidence 6999999999999998643 34566666777777665431 34689999999999999999999999999999
Q ss_pred hc-CcceEEEeeCCCCCCccceecCCCCCCccccccCchhhhHHHHHHhhhcCCCCcEEEEEEeEEEEecceeecccCCC
Q 047385 75 FN-GMNGTVITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTVDELFDCMKSSDASVKFTIKLSMVEIYMEKVRDLFDLS 153 (483)
Q Consensus 75 l~-G~n~ti~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyne~v~DLL~~~ 153 (483)
++ |||+||||||||||||||||+|+.... ..+.+|||||++++||+.+........|.|++||+|||||+|+|||++.
T Consensus 80 ~~~G~n~tifAYGqTGSGKTyTM~G~~~~~-~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~ 158 (360)
T 1ry6_A 80 YENGCVCSCFAYGQTGSGKTYTMLGSQPYG-QSDTPGIFQYAAGDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLLQKR 158 (360)
T ss_dssp HHHCCEEEEEEECCTTSSHHHHHHBSSSTT-TSSCBCHHHHHHHHHHHHHHHHCSSSCEEEEEEEEEEETTEEEESCCC-
T ss_pred ccCCceeEEEeeCCCCCCCCEEEecCCCCC-CccCCCcHHHHHHHHHHHHHhhccCCceEEEEEEEEeeCCeeEEcccCC
Confidence 96 999999999999999999999975321 2467999999999999999876667789999999999999999999875
Q ss_pred CCcceeeeccCCceEecCcEEEEecCHHHHHHHHHhhhhccCcccccCCCCCCCceEEEEEEEEEeecccceeEeeeeee
Q 047385 154 RDNIQIKESRVQGILLSGVTEIYVFNSAEALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQELTKEKRVKAGKLLL 233 (483)
Q Consensus 154 ~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~skL~~ 233 (483)
. .+.+++++.++++|.|++++.|.|++|++++|..|.++|++++|.||..|||||+||+|++.+.. .....|+|+|
T Consensus 159 ~-~~~~~e~~~~~~~v~gl~~~~V~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~---~~~~~skL~l 234 (360)
T 1ry6_A 159 K-MVAALENGKKEVVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLKDIN---KNTSLGKIAF 234 (360)
T ss_dssp -----------CCBCGGGSCCEEECSHHHHHHHHHHHHHHHHHCTTCCTTGGGGSEEEEEEEEEETT---TTEEEEEEEE
T ss_pred c-cceeeEcCCCCEEEcCcEEEEeCCHHHHHHHHHHHhhhhhcccccccCCCccceEEEEEEEEecc---CCcceeEEEE
Confidence 4 57788999999999999999999999999999999999999999999999999999999998753 3456899999
Q ss_pred eeCCCCccccccCCch-hhHHHHHHhhhhHHHHHHHHHHhccCCCCCCCCccCCCcccchhhhhccCCCcceeeeEeeCC
Q 047385 234 VDLAGSEKAEKTGAEG-KVLEEAKTINKSLSALGNVISALTCGSPGKAFHIPYRDSKLTRILQDALGGNSRTALLCCCSP 312 (483)
Q Consensus 234 VDLAGsEr~~~t~~~g-~~~~E~~~IN~SL~aL~~vI~aL~~~~~~~~~~iPyRdSkLT~lLqdsLgGns~t~mI~~isp 312 (483)
||||||||..++++.| .+++|+.+||+||++||+||.||+. +..|||||||||||||||+||||++|+|||||||
T Consensus 235 VDLAGSEr~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~----~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP 310 (360)
T 1ry6_A 235 IDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDS----DKNHIPFRDSELTKVLRDIFVGKSKSIMIANISP 310 (360)
T ss_dssp EECCCTTGGGGGGCSSHHHHHHHHHHHHHHHHHHHHHHHHTT----STTSCCGGGCHHHHHTGGGGSSSCEEEEEEEECC
T ss_pred EECCCCccccccccccccchHHHHHHHHHHHHHHHHHHHHhc----CCCCCccccCHHHHHHHHHhCCCCeEEEEEEeCC
Confidence 9999999999999876 5789999999999999999999986 4579999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcccccCCcccc
Q 047385 313 STSNSAESLSTLRFGTRAKHIKASPHAHC 341 (483)
Q Consensus 313 ~~~~~~ETlsTL~fa~rak~I~~~~~~n~ 341 (483)
+..+++||++||+||+|||+|+|.|..|.
T Consensus 311 ~~~~~~ETlsTLrfA~rak~i~n~~~~~~ 339 (360)
T 1ry6_A 311 TISCCEQTLNTLRYSSRVKNKGNSKLEGK 339 (360)
T ss_dssp BGGGHHHHHHHHHHHHHHCC---------
T ss_pred CcccHHHHHHHHHHHHHHhhcccCcccCC
Confidence 99999999999999999999999766553
No 19
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=100.00 E-value=1.7e-90 Score=712.87 Aligned_cols=325 Identities=35% Similarity=0.487 Sum_probs=257.4
Q ss_pred CCeEEEEEeCCCCccccccCCCceEEEe------cCCceEEEeCC------------CCcceeEeecEEecCCCchHHHH
Q 047385 2 SNITVCARFRPLSSKERSNHGDSVCIHG------IDNESFIFKDD------------KEENFKFGFDRVFYEKSEQAEVF 63 (483)
Q Consensus 2 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~------~~~~~~~~~~~------------~~~~~~F~FD~Vf~~~~~Q~~vf 63 (483)
++|+|+|||||+++.|...+...+++.. .++..+.+..+ ....+.|+||+||+++++|++||
T Consensus 22 ~~irV~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~Vy 101 (376)
T 2rep_A 22 GNIRVFCRVRPVLPGEPTPPPGLLLFPSGPGGPSDPPTRLSLSRSDERRGTLSGAPAPPPRHDFSFDRVFPPGSGQDEVF 101 (376)
T ss_dssp -CEEEEEEECCCCTTSCCCCGGGSBCCC------CCCCEEECCC-----------------CEEECSEEECTTCCHHHHH
T ss_pred CCeEEEEEcCCCChhhcccCCceEEEccCcccccCCCcEEEEecCCccccccccccCCCCceeeeecEEcCCcccchhhh
Confidence 6899999999999999764321222211 23344444321 12346899999999999999999
Q ss_pred HHHHHHHHHHhhcCcceEEEeeCCCCCCccceecCCCCCCccccccCchhhhHHHHHHhhhcC-CCCcEEEEEEeEEEEe
Q 047385 64 EFLALPIIRDAFNGMNGTVITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTVDELFDCMKSS-DASVKFTIKLSMVEIY 142 (483)
Q Consensus 64 ~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~i~~~-~~~~~~~v~vS~~EIy 142 (483)
+.+ .|+|+++++|||+||||||||||||||||+|++.. +++.+|||||++++||+.++.. ...+.|.|++||+|||
T Consensus 102 ~~v-~~lv~~~l~G~N~tifAYGqTGSGKTyTM~G~~~~--~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIY 178 (376)
T 2rep_A 102 EEI-AMLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGG--DPQLEGLIPRALRHLFSVAQELSGQGWTYSFVASYVEIY 178 (376)
T ss_dssp HHH-HHHHHGGGGTCCEEEEEECSTTSSHHHHHTBCSSC--CGGGBCHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEEEE
T ss_pred hhH-HHHHHHhcCCCceEEEEeCCCCCCCceEeecCCCC--CcccCCcHHHHHHHHHHHHHHhhcCCeEEEEEEEEEEEE
Confidence 985 59999999999999999999999999999997542 3467899999999999999764 3457999999999999
Q ss_pred cceeecccCCC-----CCcceeeec--cCCceEecCcEEEEecCHHHHHHHHHhhhhccCcccccCCCCCCCceEEEEEE
Q 047385 143 MEKVRDLFDLS-----RDNIQIKES--RVQGILLSGVTEIYVFNSAEALQSLASGISNRAVGETQMNMASSRSHCIYIFT 215 (483)
Q Consensus 143 ne~v~DLL~~~-----~~~l~i~e~--~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~ 215 (483)
||+|+|||++. ...+.++++ +.++++|.|++++.|.+++|++++|..|.++|++++|.||..|||||+||+|+
T Consensus 179 nE~i~DLL~~~~~~~~~~~l~ir~~~~~~~~~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~Ifti~ 258 (376)
T 2rep_A 179 NETVRDLLATGTRKGQGGECEIRRAGPGSEELTVTNARYVPVSCEKEVDALLHLARQNRAVARTAQNERSSRSHSVFQLQ 258 (376)
T ss_dssp TTEEEETTCCC--------CCEEEC---CCCEEETTCCCEEECSHHHHHHHHHHHHHHHHHCC-----CGGGSEEEEEEE
T ss_pred CCEeeEccccccccccCCCceEEeccCCCCCEEECCcEEEEeCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEE
Confidence 99999999875 236788888 57899999999999999999999999999999999999999999999999999
Q ss_pred EEEeecccceeEeeeeeeeeCCCCccccccCCch----hhHHHHHHhhhhHHHHHHHHHHhccCCCCCCCCccCCCcccc
Q 047385 216 VQQELTKEKRVKAGKLLLVDLAGSEKAEKTGAEG----KVLEEAKTINKSLSALGNVISALTCGSPGKAFHIPYRDSKLT 291 (483)
Q Consensus 216 v~~~~~~~~~~~~skL~~VDLAGsEr~~~t~~~g----~~~~E~~~IN~SL~aL~~vI~aL~~~~~~~~~~iPyRdSkLT 291 (483)
|.+..........|+|+|||||||||.+++++.| +|++|+.+||+||++||+||.||++ +..||||||||||
T Consensus 259 v~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~~~~~rlkE~~~INkSL~aLg~vI~aL~~----~~~hVPYRdSkLT 334 (376)
T 2rep_A 259 ISGEHSSRGLQCGAPLSLVDLAGSERLDPGLALGPGERERLRETQAINSSLSTLGLVIMALSN----KESHVPYRNSKLT 334 (376)
T ss_dssp EEEEESSSCCEEEEEEEEEECCCCC------------------------CHHHHHHHHHHHHT----TCSCCCGGGSHHH
T ss_pred EEEEecCCCcEEEeEEEEEECCCCcccccccccCccccchhhHHhHhhHHHHHHHHHHHHHhc----CCCccCCcCCHHH
Confidence 9998777677788999999999999999999999 9999999999999999999999997 4679999999999
Q ss_pred hhhhhccCCCcceeeeEeeCCCCCCHHHHHHHHHHHHHhccc
Q 047385 292 RILQDALGGNSRTALLCCCSPSTSNSAESLSTLRFGTRAKHI 333 (483)
Q Consensus 292 ~lLqdsLgGns~t~mI~~isp~~~~~~ETlsTL~fa~rak~I 333 (483)
|||||+||||++|+|||||||+..+++||++||+||+|++++
T Consensus 335 ~LLqdsLgGnskT~mIa~isP~~~~~~ETlsTLrfA~Rv~~~ 376 (376)
T 2rep_A 335 YLLQNSLGGSAKMLMFVNISPLEENVSESLNSLRFASKVNQC 376 (376)
T ss_dssp HHTGGGTSTTCEEEEEEEECCCGGGHHHHHHHHHHHHHHC--
T ss_pred HHHHHhhCCCCeEEEEEEeCCchhhHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999863
No 20
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=100.00 E-value=3.1e-90 Score=705.52 Aligned_cols=326 Identities=31% Similarity=0.493 Sum_probs=269.1
Q ss_pred CCeEEEEEeCCCCc-cccccCCCceEEEecCC----ceEEEeC--CCCcceeEeecEEecCCCchHHHHHHHHHHHHHHh
Q 047385 2 SNITVCARFRPLSS-KERSNHGDSVCIHGIDN----ESFIFKD--DKEENFKFGFDRVFYEKSEQAEVFEFLALPIIRDA 74 (483)
Q Consensus 2 ~~i~V~vRvRP~~~-~E~~~~~~~~~~~~~~~----~~~~~~~--~~~~~~~F~FD~Vf~~~~~Q~~vf~~~~~plv~~~ 74 (483)
++|+|+|||||+++ .|.. ....+++...+. ..+.+.. .....+.|+||+||+++++|++||+.+ .|+|+++
T Consensus 3 ~nIrV~vRvRP~~~~~e~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~v-~~lv~~~ 80 (347)
T 1f9v_A 3 GNIRVYCRIRPALKNLENS-DTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTNVDVFKEV-GQLVQSS 80 (347)
T ss_dssp CEEEEEEEECCCCTTTCCC-TTEEEEECCCBTTTTBEEEEEEEGGGTTCEEEEEESEEECTTCCHHHHHHHH-HHHHGGG
T ss_pred CCeEEEEEeCCCCcccccC-CCceEEEecccCCCCceEEEEecCCCCcCceEEeeCEEECCCCCHHHHHHHH-HHHHHHh
Confidence 78999999999997 4422 112223322221 2344433 223568999999999999999999984 6999999
Q ss_pred hcCcceEEEeeCCCCCCccceecCCCCCCccccccCchhhhHHHHHHhhhcC-CCCcEEEEEEeEEEEecceeecccCCC
Q 047385 75 FNGMNGTVITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTVDELFDCMKSS-DASVKFTIKLSMVEIYMEKVRDLFDLS 153 (483)
Q Consensus 75 l~G~n~ti~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~i~~~-~~~~~~~v~vS~~EIyne~v~DLL~~~ 153 (483)
++|||+||||||||||||||||+|+ ++|||||++++||+.+... ...+.|.|++||+|||||+|+|||++.
T Consensus 81 l~G~n~tifAYGqTGSGKTyTM~G~--------~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~ 152 (347)
T 1f9v_A 81 LDGYNVCIFAYGQTGSGKTFTMLNP--------GDGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSD 152 (347)
T ss_dssp GGTCCEEEEEECCTTSSHHHHHHST--------TTSHHHHHHHHHHHHHHHHGGGTCEEEEEEEEEEEETTEEEETTC--
T ss_pred cCCceeEEEEECCCCCCCcEeccCC--------CCCchHHHHHHHHHHHHhhhhcCCceEEEEEEEEEECCeeeeccCCc
Confidence 9999999999999999999999994 3799999999999999753 235799999999999999999999876
Q ss_pred CC---------cceeeec-cCCceEecCcEEEEecCHHHHHHHHHhhhhccCcccccCCCCCCCceEEEEEEEEEeeccc
Q 047385 154 RD---------NIQIKES-RVQGILLSGVTEIYVFNSAEALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQELTKE 223 (483)
Q Consensus 154 ~~---------~l~i~e~-~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~ 223 (483)
.. .+.++++ ..++++|.|++++.|.+++|++.+|..|.++|++++|.||..|||||+||+|+|.+.+...
T Consensus 153 ~~~~~~~~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~ 232 (347)
T 1f9v_A 153 NNNKEDTSIGLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIHLSGSNAKT 232 (347)
T ss_dssp -----------CCCEEEETTTTEEEETTCCCEECSSGGGHHHHHHHHC-----------CCGGGSEEEEEEEEEEECC--
T ss_pred cccccccccCCceeEEEecCCCceEecCCEEEEcCCHHHHHHHHHHHHhccceeeccCCCCCCCceEEEEEEEEEecCCC
Confidence 43 4678876 4678999999999999999999999999999999999999999999999999999887666
Q ss_pred ceeEeeeeeeeeCCCCccccccCCchhhHHHHHHhhhhHHHHHHHHHHhccCCCCCCCCccCCCcccchhhhhccCCCcc
Q 047385 224 KRVKAGKLLLVDLAGSEKAEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSPGKAFHIPYRDSKLTRILQDALGGNSR 303 (483)
Q Consensus 224 ~~~~~skL~~VDLAGsEr~~~t~~~g~~~~E~~~IN~SL~aL~~vI~aL~~~~~~~~~~iPyRdSkLT~lLqdsLgGns~ 303 (483)
+....|+|+|||||||||.+++++.|.+++|+.+||+||++||+||.||+++.. +..|||||||||||||||+||||++
T Consensus 233 ~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~-~~~hiPyRdSkLT~lLqdsLgGnsk 311 (347)
T 1f9v_A 233 GAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDS-TKRHIPFRNSKLTYLLQYSLTGDSK 311 (347)
T ss_dssp CCEEEEEEEEEECCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHTSCC----CCCCGGGSHHHHHHHHHHSTTCE
T ss_pred CceeeeEEEEEECCCCccccccccchhhhHHHHHHhHHHHHHHHHHHHHhcccC-CCCcCccccCHHHHHHHHHhCCCcc
Confidence 677889999999999999999999999999999999999999999999987432 3579999999999999999999999
Q ss_pred eeeeEeeCCCCCCHHHHHHHHHHHHHhcccccCCc
Q 047385 304 TALLCCCSPSTSNSAESLSTLRFGTRAKHIKASPH 338 (483)
Q Consensus 304 t~mI~~isp~~~~~~ETlsTL~fa~rak~I~~~~~ 338 (483)
|+|||||||+..+++||++||+||+||++|+..++
T Consensus 312 t~mI~~vsP~~~~~~ETl~TLrfA~r~~~i~~~~r 346 (347)
T 1f9v_A 312 TLMFVNISPSSSHINETLNSLRFASKVNSTRLVSR 346 (347)
T ss_dssp EEEEEEECCSGGGHHHHHHHHHHHHHHCCTTTC--
T ss_pred EEEEEEeCCccccHHHHHHHHHHHHHHhhhccCCC
Confidence 99999999999999999999999999999998764
No 21
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=100.00 E-value=2.2e-90 Score=712.45 Aligned_cols=324 Identities=32% Similarity=0.486 Sum_probs=260.2
Q ss_pred CCeEEEEEeCCCCccccccCCCceEEEecCCceEEEeCCCC--------cceeEeecEEecCCCchHHHHHHHHHHHHHH
Q 047385 2 SNITVCARFRPLSSKERSNHGDSVCIHGIDNESFIFKDDKE--------ENFKFGFDRVFYEKSEQAEVFEFLALPIIRD 73 (483)
Q Consensus 2 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~F~FD~Vf~~~~~Q~~vf~~~~~plv~~ 73 (483)
++|+|+|||||+++.|...+ ...|+...+...+++..++. +.+.|+||+||+++++|++||+.+++|+|++
T Consensus 51 ~~I~V~vRvRP~~~~E~~~~-~~~~v~~~~~~~~~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~sQ~~Vy~~~~~plv~~ 129 (387)
T 2heh_A 51 HRICVCVRKRPLNKQELAKK-EIDVISIPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQT 129 (387)
T ss_dssp CSEEEEEEECCCCHHHHHTT-CCBCEECCBSSEEEEEEEEECTTCCEEEEEEEEECSEEECTTCCHHHHHHHTTHHHHHH
T ss_pred CCeEEEEECCCCChHHhccC-CceEEEECCCCEEEEeCCCccccccccccccEEeeeEEEecCCCceeehhhhHHHHHHH
Confidence 68999999999999998644 34456555666666544321 3478999999999999999999999999999
Q ss_pred hhcCcceEEEeeCCCCCCccceecCCCCCCccccccCchhhhHHHHHHhhhcCC-CCcEEEEEEeEEEEecceeecccCC
Q 047385 74 AFNGMNGTVITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTVDELFDCMKSSD-ASVKFTIKLSMVEIYMEKVRDLFDL 152 (483)
Q Consensus 74 ~l~G~n~ti~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~i~~~~-~~~~~~v~vS~~EIyne~v~DLL~~ 152 (483)
+++|||+||||||||||||||||+|+.........+|||||++++||..+.... ....|.|+|||+|||||+|+|||++
T Consensus 130 ~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipr~~~~lF~~~~~~~~~~~~~~V~vS~~EIYnE~v~DLL~~ 209 (387)
T 2heh_A 130 IFEGGKATCFAYGQTGSGKTHTMGGDLSGKAQNASKGIYAMASRDVFLLKNQPCYRKLGLEVYVTFFEIYNGKLFDLLNK 209 (387)
T ss_dssp HHTTCEEEEEEESCTTSSHHHHHC-----------CCHHHHHHHHHHHHHTSHHHHTTTCEEEEEEEEEETTEEEETTTT
T ss_pred HhcCCceEEEEecCCCCCCCeEeccCCCCCCcccCCceehhhHHHHHHHhhcccccCceEEEEEEEEEecCCeEEECCCC
Confidence 999999999999999999999999964333234679999999999999986531 2467999999999999999999987
Q ss_pred CCCcceeeeccCCceEecCcEEEEecCHHHHHHHHHhhhhccCcccccCCCCCCCceEEEEEEEEEeecccceeEeeeee
Q 047385 153 SRDNIQIKESRVQGILLSGVTEIYVFNSAEALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQELTKEKRVKAGKLL 232 (483)
Q Consensus 153 ~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~skL~ 232 (483)
. ..+.+++++.++++|.||+++.|.|++|++++|..|.++|++++|.||..|||||+||+|+|++. ....|+|+
T Consensus 210 ~-~~l~i~ed~~~~v~v~gl~~~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~-----~~~~skL~ 283 (387)
T 2heh_A 210 K-AKLRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRAK-----GRMHGKFS 283 (387)
T ss_dssp T-EECEEEECTTCCEEEETCCCEEESSHHHHHHHHHHHHHHC---------CGGGSEEEEEEEEESS-----SSEEEEEE
T ss_pred C-ccceEEEcCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhCCcccCcCcCCcccceEEEEEEEEEC-----CeeeeEEE
Confidence 5 47899999999999999999999999999999999999999999999999999999999999874 24679999
Q ss_pred eeeCCCCccccccC-CchhhHHHHHHhhhhHHHHHHHHHHhccCCCCCCCCccCCCcccchhhhhc-cCCCcceeeeEee
Q 047385 233 LVDLAGSEKAEKTG-AEGKVLEEAKTINKSLSALGNVISALTCGSPGKAFHIPYRDSKLTRILQDA-LGGNSRTALLCCC 310 (483)
Q Consensus 233 ~VDLAGsEr~~~t~-~~g~~~~E~~~IN~SL~aL~~vI~aL~~~~~~~~~~iPyRdSkLT~lLqds-LgGns~t~mI~~i 310 (483)
|||||||||..+++ +.+.+++|+.+||+||++||+||.||++ +..|||||||||||||||+ ||||++|+|||||
T Consensus 284 lVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~----~~~hvPYRdSKLTrlLqdsllGgnskT~mIa~i 359 (387)
T 2heh_A 284 LVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQ----NKAHTPFRESKLTQVLRDSFIGENSRTCMIATI 359 (387)
T ss_dssp EEECCCCC---------------CHHHHHHHHHHHHHHHHHHT----TCSCCCGGGSHHHHHTGGGGSSTTEEEEEEEEE
T ss_pred EEECCCCccccccccccccchhhHHHHhHHHHHHHHHHHHHhc----CCCCCCccccHHHHHHhhhccCCCCeEEEEEEe
Confidence 99999999998886 4668889999999999999999999986 4679999999999999999 5999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhcccccC
Q 047385 311 SPSTSNSAESLSTLRFGTRAKHIKAS 336 (483)
Q Consensus 311 sp~~~~~~ETlsTL~fa~rak~I~~~ 336 (483)
||+..+++||++||+||+|||+|++.
T Consensus 360 sP~~~~~~ETlsTLrfA~rak~I~~~ 385 (387)
T 2heh_A 360 SPGISSCEYTLNTLRYADRVKELSPH 385 (387)
T ss_dssp CCBGGGHHHHHHHHHHHHHHCC----
T ss_pred CCccchHHHHHHHHHHHHHhccCcCC
Confidence 99999999999999999999999874
No 22
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=6.5e-90 Score=705.05 Aligned_cols=318 Identities=35% Similarity=0.555 Sum_probs=261.1
Q ss_pred CCeEEEEEeCCCCccccccCCCceEEEecCCceEEEeCCC----------CcceeEeecEEecCCCchHHHHHHHHHHHH
Q 047385 2 SNITVCARFRPLSSKERSNHGDSVCIHGIDNESFIFKDDK----------EENFKFGFDRVFYEKSEQAEVFEFLALPII 71 (483)
Q Consensus 2 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~F~FD~Vf~~~~~Q~~vf~~~~~plv 71 (483)
++|+|+|||||+++.|.. .+....+...+.+..+. ...+.|+||+||+ +++|++||+.+++|+|
T Consensus 24 ~~i~V~vRvRP~~~~e~~-----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~F~FD~Vf~-~~sQ~~Vy~~~~~plv 97 (359)
T 3nwn_A 24 KKVHAFVRVKPTDDFAHE-----MIRYGDDKRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVLH-DASQDLVYETVAKDVV 97 (359)
T ss_dssp CCEEEEEEECCCSSCCTT-----TEEECTTSSEEEEECCCCSSHHHHTTSCCEEEEECSEEEE-SCCHHHHHHHHTHHHH
T ss_pred CCEEEEEEcCCCCccccc-----ceeecCCCcEEEEecCCccccccccCCcCceEeecCccCC-CCCHHHHHHHHHHHHH
Confidence 689999999999877642 22233344555554432 3457899999997 5889999999999999
Q ss_pred HHhhcCcceEEEeeCCCCCCccceecCCCCCCccccccCchhhhHHHHHHhhhcCCCCcEEEEEEeEEEEecceeecccC
Q 047385 72 RDAFNGMNGTVITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTVDELFDCMKSSDASVKFTIKLSMVEIYMEKVRDLFD 151 (483)
Q Consensus 72 ~~~l~G~n~ti~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyne~v~DLL~ 151 (483)
+++++|||+||||||||||||||||+|+.. +.+++|||||++++||+.+... ....|.|+|||+|||||+|+|||+
T Consensus 98 ~~~l~G~N~tifAYGQTGSGKTyTM~G~~~---~~~~~Giipra~~~lF~~~~~~-~~~~~~v~vS~~EIYnE~i~DLL~ 173 (359)
T 3nwn_A 98 SQALDGYNGTIMCYGQTGAGKTYTMMGATE---NYKHRGILPRALQQVFRMIEER-PTHAITVRVSYLEIYNESLFDLLS 173 (359)
T ss_dssp HHHHTTCCEEEEEEESTTSSHHHHHTBCSS---CGGGBCHHHHHHHHHHHHHHTC-TTSCEEEEEEEEEEETTEEEETTS
T ss_pred HHHhCCCCEEEEEeCCCCCCccEEeCCccC---CccchhhHHHHHHHHHHHhhcC-CCCcEEEEEEEEEEeccccccccc
Confidence 999999999999999999999999999753 3467899999999999998876 567899999999999999999997
Q ss_pred CCC------CcceeeeccCCceEecCcEEEEecCHHHHHHHHHhhhhccCcccccCCCCCCCceEEEEEEEEEeec--cc
Q 047385 152 LSR------DNIQIKESRVQGILLSGVTEIYVFNSAEALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQELT--KE 223 (483)
Q Consensus 152 ~~~------~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~--~~ 223 (483)
+.. ..+.+++++ .|++|.|++++.|.+++|++++|..|.++|.+++|.||..|||||+||+|+|.+... ..
T Consensus 174 ~~~~~~~~~~~~~~~~~~-~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~i~~~~~~~~~ 252 (359)
T 3nwn_A 174 TLPYVGPSVTPMTIVENP-QGVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRTLSE 252 (359)
T ss_dssp SSTTSCTTTSCCEEEEET-TEEEEETCCCEECSSHHHHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEEEEEC------
T ss_pred cccccccccccceEEecC-CceEEeccEEEEecCHHHHHHHHHhhhhhcccccccCccccCcceEEEEEEEEeecccccC
Confidence 532 356677776 679999999999999999999999999999999999999999999999999987643 34
Q ss_pred ceeEeeeeeeeeCCCCccccccCCchhhHHHHHHhhhhHHHHHHHHHHhccCCCCCCCCccCCCcccchhhhhccCCCcc
Q 047385 224 KRVKAGKLLLVDLAGSEKAEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSPGKAFHIPYRDSKLTRILQDALGGNSR 303 (483)
Q Consensus 224 ~~~~~skL~~VDLAGsEr~~~t~~~g~~~~E~~~IN~SL~aL~~vI~aL~~~~~~~~~~iPyRdSkLT~lLqdsLgGns~ 303 (483)
.....|+|+|||||||||..++++.|++++|+.+||+||++||+||.||+++ +..|||||||||||||||+|||||+
T Consensus 253 ~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~~Lg~vI~aL~~~---~~~hVPYRdSkLT~lLqdsLgGnsk 329 (359)
T 3nwn_A 253 EKYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQ---KRDHIPFRQCKLTHALKDSLGGNCN 329 (359)
T ss_dssp -CCEEEEEEEEECCCCC----------------CCSTHHHHHHHHHHHHHC--------CCGGGSHHHHHTHHHHSSSSE
T ss_pred cccccccceeeeccccccccccCCchhHHHhhhhhcccHHHHHHHHHHHHhc---CCCcCCcccCHHHHHHHHhcCCCcc
Confidence 4567899999999999999999999999999999999999999999999873 4579999999999999999999999
Q ss_pred eeeeEeeCCCCCCHHHHHHHHHHHHHhccc
Q 047385 304 TALLCCCSPSTSNSAESLSTLRFGTRAKHI 333 (483)
Q Consensus 304 t~mI~~isp~~~~~~ETlsTL~fa~rak~I 333 (483)
|+|||||||+..+++||++||+||+|||+|
T Consensus 330 t~mI~~isP~~~~~~ETlsTL~fA~rak~I 359 (359)
T 3nwn_A 330 MVLVTNIYGEAAQLEETLSSLRFASRMKLV 359 (359)
T ss_dssp EEEEEEECCSGGGHHHHHHHHHHHTTGGGC
T ss_pred EEEEEEeCCchhhHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999987
No 23
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=100.00 E-value=4.9e-90 Score=713.97 Aligned_cols=326 Identities=32% Similarity=0.494 Sum_probs=265.8
Q ss_pred CCeEEEEEeCCCCccccccCCCceEEEecCCceEEEeCCCC--------cceeEeecEEecCCCchHHHHHHHHHHHHHH
Q 047385 2 SNITVCARFRPLSSKERSNHGDSVCIHGIDNESFIFKDDKE--------ENFKFGFDRVFYEKSEQAEVFEFLALPIIRD 73 (483)
Q Consensus 2 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~F~FD~Vf~~~~~Q~~vf~~~~~plv~~ 73 (483)
++|+|+|||||++..|...+ ...|+...+...+++..++. ..+.|+||+||+++++|++||+.++.|+|++
T Consensus 71 ~~I~V~vRvRPl~~~E~~~~-~~~~v~~~~~~~v~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~tQ~~Vy~~~~~plV~~ 149 (410)
T 1v8k_A 71 HRICVCVRKRPLNKQELAKK-EIDVISVPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQT 149 (410)
T ss_dssp CCEEEEEEECCCCHHHHHTT-CCBCEECCSSSEEEEEEEEECTTCCEEEEEEEEECSEEECTTCCHHHHHHHTTHHHHHH
T ss_pred CCeEEEEEeCCCChhHhhcC-CccEEEECCCCEEEEecCcccccccccccceEEeeeEEEecCCChhhhhHHHHHHHHHH
Confidence 68999999999999998643 34456555666666554321 3478999999999999999999999999999
Q ss_pred hhcCcceEEEeeCCCCCCccceecCCCCCCccccccCchhhhHHHHHHhhhcCC-CCcEEEEEEeEEEEecceeecccCC
Q 047385 74 AFNGMNGTVITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTVDELFDCMKSSD-ASVKFTIKLSMVEIYMEKVRDLFDL 152 (483)
Q Consensus 74 ~l~G~n~ti~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~i~~~~-~~~~~~v~vS~~EIyne~v~DLL~~ 152 (483)
+++|||+||||||||||||||||+|+.........+|||||++++||..+.... ....|.|+|||+|||||+|+|||++
T Consensus 150 ~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipra~~~lF~~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~ 229 (410)
T 1v8k_A 150 IFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNK 229 (410)
T ss_dssp HHTTCEEEEEEEESTTSSHHHHHHCBC----CBGGGSHHHHHHHHHHHHHTSHHHHTTCCEEEEEEEEEETTEEEETTTT
T ss_pred HhcCCceeEEeecCCCCCCCeEeecCCCCCCccccCcchhhhHHHHHHHHhhhcccCccEEEEEEEEEeeCCEEEECCCC
Confidence 999999999999999999999999965333334679999999999999986531 3468999999999999999999987
Q ss_pred CCCcceeeeccCCceEecCcEEEEecCHHHHHHHHHhhhhccCcccccCCCCCCCceEEEEEEEEEeecccceeEeeeee
Q 047385 153 SRDNIQIKESRVQGILLSGVTEIYVFNSAEALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQELTKEKRVKAGKLL 232 (483)
Q Consensus 153 ~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~skL~ 232 (483)
. ..+.+++++.++++|.||+++.|.|++|++++|..|.++|++++|.||..|||||+||+|+|.+. ....|+|+
T Consensus 230 ~-~~l~i~ed~~~~v~V~gl~e~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~-----~~~~skL~ 303 (410)
T 1v8k_A 230 K-AKLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTK-----GRLHGKFS 303 (410)
T ss_dssp T-EEEEEEECSSCCEEEETCCCEEESSHHHHHHHHHHHHHTCC--------CCCSSEEEEEEEEESS-----SSEEEEEE
T ss_pred C-CCceEEECCCCCeEecCCEEEEeCCHHHHHHHHHHHHhhCCcccccCCCCCCCceEEEEEEEEeC-----CcceeEEE
Confidence 5 47999999999999999999999999999999999999999999999999999999999999874 24679999
Q ss_pred eeeCCCCccccccC-CchhhHHHHHHhhhhHHHHHHHHHHhccCCCCCCCCccCCCcccchhhhhc-cCCCcceeeeEee
Q 047385 233 LVDLAGSEKAEKTG-AEGKVLEEAKTINKSLSALGNVISALTCGSPGKAFHIPYRDSKLTRILQDA-LGGNSRTALLCCC 310 (483)
Q Consensus 233 ~VDLAGsEr~~~t~-~~g~~~~E~~~IN~SL~aL~~vI~aL~~~~~~~~~~iPyRdSkLT~lLqds-LgGns~t~mI~~i 310 (483)
|||||||||..+++ +.+.+++|+.+||+||++||+||.||+. +..||||||||||+||||+ |||||+|+|||||
T Consensus 304 lVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~----~~~hIPYRdSKLTrLLqdsllGgnskT~mIa~i 379 (410)
T 1v8k_A 304 LVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQ----NKAHTPFRESKLTQVLRDSFIGENSRTCMIAMI 379 (410)
T ss_dssp EEECCCCCC------------TTHHHHHHHHHHHHHHHHHHTC----------CCCCHHHHHTTHHHHSSSEEEEEEEEE
T ss_pred EEECCCccccccccccccchhHHHHHHhHHHHHHHHHHHHHhc----CCCCCCcccchhHHHHhhcccCCCceEEEEEEe
Confidence 99999999998886 4677888999999999999999999986 4579999999999999999 5999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhcccccCCc
Q 047385 311 SPSTSNSAESLSTLRFGTRAKHIKASPH 338 (483)
Q Consensus 311 sp~~~~~~ETlsTL~fa~rak~I~~~~~ 338 (483)
||+..+++||++||+||+|||+|..+|.
T Consensus 380 SP~~~~~~ETlsTLrfA~rak~i~~~~~ 407 (410)
T 1v8k_A 380 SPGISSCEYTLNTLRYADRVKELSHHHH 407 (410)
T ss_dssp CCBGGGHHHHHHHHHHHHHHHTTC----
T ss_pred CCccccHHHHHHHHHHHHHhccCCCCCC
Confidence 9999999999999999999999988775
No 24
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-88 Score=705.38 Aligned_cols=327 Identities=31% Similarity=0.493 Sum_probs=277.3
Q ss_pred CCeEEEEEeCCCCccccccCCCceEEEecCCc----eEEEeC--CCCcceeEeecEEecCCCchHHHHHHHHHHHHHHhh
Q 047385 2 SNITVCARFRPLSSKERSNHGDSVCIHGIDNE----SFIFKD--DKEENFKFGFDRVFYEKSEQAEVFEFLALPIIRDAF 75 (483)
Q Consensus 2 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~----~~~~~~--~~~~~~~F~FD~Vf~~~~~Q~~vf~~~~~plv~~~l 75 (483)
|+|+|+|||||+.+.+........++...++. .+.+.. .....+.|.||+||+++++|++||+.+ .|+|++++
T Consensus 59 gnIrV~vRvRP~~~~~e~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~VF~~~~~Q~~Vf~~v-~~lv~~~l 137 (403)
T 4etp_A 59 GNIRVYLRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTNVDVFKEV-GQLVQSSL 137 (403)
T ss_dssp CSEEEEEEECCCCTTTSCSCCTTEEECCCBTTTTBEEEEEEECSSSCEEEEEEESEEECTTCCHHHHHHHH-HHHHHHHH
T ss_pred CCeEEEEEeCCCCCcccccCCCeeEEeeccCCCCceEEEEecCCCCcCceEEEcCEEECCCCchHHHHHHH-HHHHHHHh
Confidence 79999999999988732223334455433321 233322 223468899999999999999999984 59999999
Q ss_pred cCcceEEEeeCCCCCCccceecCCCCCCccccccCchhhhHHHHHHhhhcC-CCCcEEEEEEeEEEEecceeecccCCCC
Q 047385 76 NGMNGTVITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTVDELFDCMKSS-DASVKFTIKLSMVEIYMEKVRDLFDLSR 154 (483)
Q Consensus 76 ~G~n~ti~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~i~~~-~~~~~~~v~vS~~EIyne~v~DLL~~~~ 154 (483)
+|||+||||||||||||||||+|+ .+|||||++++||+.+... ...+.|.|+|||+|||||+|+|||++..
T Consensus 138 ~G~N~tifAYGqTGSGKTyTM~g~--------~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~ 209 (403)
T 4etp_A 138 DGYNVAIFAYGQTGSGKTFTMLNP--------GDGIIPSTISHIFNWINKLKTKGWDYKVNAEFIEIYNENIVDLLRSDN 209 (403)
T ss_dssp TTCCEEEEEESCTTSSHHHHHHCT--------TTSHHHHHHHHHHHHHHHHHTTTEEEEEEEEEEEEETTEEEETTCC--
T ss_pred CCcceEEEEECCCCCCCceEeCCC--------CCccchhHHHHHHHHHHhhhccCceEEEEEEEEEEecceeeEccCCcc
Confidence 999999999999999999999995 3699999999999999763 3468999999999999999999998753
Q ss_pred ---------Ccceeeecc-CCceEecCcEEEEecCHHHHHHHHHhhhhccCcccccCCCCCCCceEEEEEEEEEeecccc
Q 047385 155 ---------DNIQIKESR-VQGILLSGVTEIYVFNSAEALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQELTKEK 224 (483)
Q Consensus 155 ---------~~l~i~e~~-~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~ 224 (483)
..+.+++++ .++++|.|++++.|.+++|++.+|..|.++|++++|.||..|||||+||+|++.+.+...+
T Consensus 210 ~~~~~~~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~ 289 (403)
T 4etp_A 210 NNKEDTSIGLKHEIRHDQETKTTTITNVTSVKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTG 289 (403)
T ss_dssp ------CCSCCCCEEEETTTTEEEETTCCCEECCCHHHHHHHHHHHC--C----CHHHHHHHTSEEEEEEEEEEEETTTC
T ss_pred ccccccccCcceeeEEeCCCCCEEecCcEEEEeCCHHHHHHHHHHHHHhcccccccCCcccCCcccEEEEEEEEeecCCC
Confidence 246677765 5679999999999999999999999999999999999999999999999999999887777
Q ss_pred eeEeeeeeeeeCCCCccccccCCchhhHHHHHHhhhhHHHHHHHHHHhccCCCCCCCCccCCCcccchhhhhccCCCcce
Q 047385 225 RVKAGKLLLVDLAGSEKAEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSPGKAFHIPYRDSKLTRILQDALGGNSRT 304 (483)
Q Consensus 225 ~~~~skL~~VDLAGsEr~~~t~~~g~~~~E~~~IN~SL~aL~~vI~aL~~~~~~~~~~iPyRdSkLT~lLqdsLgGns~t 304 (483)
....|+|+|||||||||..++++.|.+++|+.+||+||++||+||.||++... +..||||||||||+||||+|||||+|
T Consensus 290 ~~~~~kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~-~~~hiPyRdSkLT~LLqdsLgGnskt 368 (403)
T 4etp_A 290 AHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSALGDVIHALGQPDS-TKRHIPFRNSKLTYLLQYSLTGDSKT 368 (403)
T ss_dssp CEEEEEEEEEECCCCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTSSCT-TTSCCCGGGSHHHHHTGGGTSTTCEE
T ss_pred CeeEEEEEEEECCCCccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhcccC-CCCcCCcccchHHHHHHHhcCCCceE
Confidence 77889999999999999999999999999999999999999999999987532 44699999999999999999999999
Q ss_pred eeeEeeCCCCCCHHHHHHHHHHHHHhcccccCCc
Q 047385 305 ALLCCCSPSTSNSAESLSTLRFGTRAKHIKASPH 338 (483)
Q Consensus 305 ~mI~~isp~~~~~~ETlsTL~fa~rak~I~~~~~ 338 (483)
+|||||||+..+++||++||+||+|+++|+..|+
T Consensus 369 ~mi~~vsP~~~~~~ETl~TL~fA~rv~~~~~~~r 402 (403)
T 4etp_A 369 LMFVNISPSSSHINETLNSLRFASKVNSTRLVSR 402 (403)
T ss_dssp EEEEEECCSGGGHHHHHHHHHHHHHHCCC-----
T ss_pred EEEEEeCCchhhHHHHHHHHHHHHHHhhcccCCC
Confidence 9999999999999999999999999999998764
No 25
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=100.00 E-value=4.6e-89 Score=698.56 Aligned_cols=318 Identities=35% Similarity=0.548 Sum_probs=263.0
Q ss_pred CCeEEEEEeCCCCccccccCCCceEEEecCCceEEEeCCC----------CcceeEeecEEecCCCchHHHHHHHHHHHH
Q 047385 2 SNITVCARFRPLSSKERSNHGDSVCIHGIDNESFIFKDDK----------EENFKFGFDRVFYEKSEQAEVFEFLALPII 71 (483)
Q Consensus 2 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~F~FD~Vf~~~~~Q~~vf~~~~~plv 71 (483)
|+|+|+|||||+...+. ..+....++.++.+..++ ...+.|+||+||+ +++|++||+.+++|+|
T Consensus 23 g~IrV~vRvRP~~~~~~-----~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~F~fD~Vf~-~~sQ~~Vy~~~~~~lv 96 (358)
T 2nr8_A 23 KKVHAFVRVKPTDDFAH-----EMIRYGDDKRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVLH-DASQDLVYETVAKDVV 96 (358)
T ss_dssp CCEEEEEEECCCSSCCT-----TTEEECTTSSEEEEECCCCSSHHHHTTSCCEEEEECSEEEE-SCCHHHHHHHHTHHHH
T ss_pred CCeEEEEEcCCCCCCcc-----ceeEECCCCCEEEEecCCccccccccCCCcceEEECCeecC-CcCHHHHHHHHHHHHH
Confidence 79999999999976432 122233455666655442 2357899999995 7899999999999999
Q ss_pred HHhhcCcceEEEeeCCCCCCccceecCCCCCCccccccCchhhhHHHHHHhhhcCCCCcEEEEEEeEEEEecceeecccC
Q 047385 72 RDAFNGMNGTVITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTVDELFDCMKSSDASVKFTIKLSMVEIYMEKVRDLFD 151 (483)
Q Consensus 72 ~~~l~G~n~ti~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyne~v~DLL~ 151 (483)
+++++|||+||||||||||||||||+|+... ...+|||||++++||+.++.. ....|.|++||+|||||+|+|||+
T Consensus 97 ~~~l~G~N~tIfAYGqTGSGKTyTM~G~~~~---~~~~Giipra~~~lF~~i~~~-~~~~~~v~vS~~EIYnE~i~DLL~ 172 (358)
T 2nr8_A 97 SQALDGYNGTIMCYGQTGAGKTYTMMGATEN---YKHRGILPRALQQVFRMIEER-PTHAITVRVSYLEIYNESLFDLLS 172 (358)
T ss_dssp HHHHTTCCEEEEEEESTTSSHHHHHTBCSSC---GGGBCHHHHHHHHHHHHHHTC-TTSCEEEEEEEEEEETTEEEETTS
T ss_pred HHHhCCCceEEEEECCCCCCCceEecccccc---cccCCcHHHHHHHHHHHHhhc-CCceEEEEEEEEEEeCCeeeECcC
Confidence 9999999999999999999999999997542 346899999999999999876 456899999999999999999998
Q ss_pred CC------CCcceeeeccCCceEecCcEEEEecCHHHHHHHHHhhhhccCcccccCCCCCCCceEEEEEEEEEeec--cc
Q 047385 152 LS------RDNIQIKESRVQGILLSGVTEIYVFNSAEALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQELT--KE 223 (483)
Q Consensus 152 ~~------~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~--~~ 223 (483)
+. ..++.+++++ .|++|.|++++.|.+++|++.+|..|.++|++++|.||..|||||+||+|+|++... ..
T Consensus 173 ~~~~~~~~~~~l~i~e~~-~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~ 251 (358)
T 2nr8_A 173 TLPYVGPSVTPMTIVENP-QGVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRTLSE 251 (358)
T ss_dssp SSTTSCTTTSCCEEEEET-TEEEEETCCCEECSSHHHHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEEEEEC------
T ss_pred CccccCccCCceEEEECC-CceEecCCEEEEcCCHHHHHHHHHHHHhccccccccCCCCCCcCeEEEEEEEEEEeccCCC
Confidence 63 3578999998 789999999999999999999999999999999999999999999999999998643 33
Q ss_pred ceeEeeeeeeeeCCCCccccccCCchhhHHHHHHhhhhHHHHHHHHHHhccCCCCCCCCccCCCcccchhhhhccCCCcc
Q 047385 224 KRVKAGKLLLVDLAGSEKAEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSPGKAFHIPYRDSKLTRILQDALGGNSR 303 (483)
Q Consensus 224 ~~~~~skL~~VDLAGsEr~~~t~~~g~~~~E~~~IN~SL~aL~~vI~aL~~~~~~~~~~iPyRdSkLT~lLqdsLgGns~ 303 (483)
.....|+|+|||||||||.+++++.|++++|+.+||+||++||+||.||+++ +..||||||||||+||||+|||||+
T Consensus 252 ~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~---~~~hiPyRdSkLT~LLqdsLgGnsk 328 (358)
T 2nr8_A 252 EKYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQ---KRDHIPFRQCKLTHALKDSLGGNCN 328 (358)
T ss_dssp -CCEEEEEEEEECCCCC----------------CCSTHHHHHHHHHHHHHC--------CCGGGSHHHHHTHHHHSSSSE
T ss_pred CCEEEEEEEEEECCCCCcccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhC---CCCcCCCccCHHHHHHHHhcCCCCe
Confidence 4456899999999999999999999999999999999999999999999873 4569999999999999999999999
Q ss_pred eeeeEeeCCCCCCHHHHHHHHHHHHHhccc
Q 047385 304 TALLCCCSPSTSNSAESLSTLRFGTRAKHI 333 (483)
Q Consensus 304 t~mI~~isp~~~~~~ETlsTL~fa~rak~I 333 (483)
|+|||||||+..+++||++||+||+|||+|
T Consensus 329 t~mIa~isP~~~~~~ETlsTLrfA~Rak~I 358 (358)
T 2nr8_A 329 MVLVTNIYGEAAQLEETLSSLRFASRMKLV 358 (358)
T ss_dssp EEEEEEECCSGGGHHHHHHHHHHHTTGGGC
T ss_pred EEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999986
No 26
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=100.00 E-value=7.1e-88 Score=700.87 Aligned_cols=319 Identities=35% Similarity=0.527 Sum_probs=271.2
Q ss_pred CCeEEEEEeCCCCccccccCCCceEEEecCCceEEEeCCCC------cceeEeecEEecCCCchHHHHHHHHHHHHHHhh
Q 047385 2 SNITVCARFRPLSSKERSNHGDSVCIHGIDNESFIFKDDKE------ENFKFGFDRVFYEKSEQAEVFEFLALPIIRDAF 75 (483)
Q Consensus 2 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~F~FD~Vf~~~~~Q~~vf~~~~~plv~~~l 75 (483)
|+|+|+|||||+++.|.... ..++...++.++.+..+.. ..+.|+||+||+++++|++||+. +.|+|++++
T Consensus 59 gnIrV~vRvRP~~~~E~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~~Q~~Vf~~-v~plv~~~l 135 (412)
T 3u06_A 59 DNIRVFCRIRPPLESEENRM--CCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQSDIFEM-VSPLIQSAL 135 (412)
T ss_dssp CSEEEEEEECCCCGGGTTSC--BCEEEEEETTEEEEECCC-------CCCEEECSEEECTTCCHHHHHTT-THHHHHHHH
T ss_pred CCEEEEEEcCCCCchhccCc--ceEEEecCCCEEEEecCCcccccccCceEEeeCeEcCCCCCHHHHHHH-HHHHHHHHH
Confidence 79999999999999986432 2223345666666654321 24689999999999999999986 569999999
Q ss_pred cCcceEEEeeCCCCCCccceecCCCCCCccccccCchhhhHHHHHHhhhcC-CCCcEEEEEEeEEEEecceeecccCCCC
Q 047385 76 NGMNGTVITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTVDELFDCMKSS-DASVKFTIKLSMVEIYMEKVRDLFDLSR 154 (483)
Q Consensus 76 ~G~n~ti~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~i~~~-~~~~~~~v~vS~~EIyne~v~DLL~~~~ 154 (483)
+|||+||||||||||||||||+|+ ++++|||||++++||+.+... ...+.|.|++||+|||||.|+|||++..
T Consensus 136 ~G~n~tifAYGqTGSGKTyTM~G~------~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~ 209 (412)
T 3u06_A 136 DGYNICIFAYGQTGSGKTYTMDGV------PESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQ 209 (412)
T ss_dssp TTCCEEEEEESSTTSSHHHHHTEE------TTEECHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEETTCCSC
T ss_pred CCCceEEEEecCCCCCCeeEecCC------CCCCccHHHHHHHHHHhhhhhcccCceEEEEEEEEEEeCCeeEEcCCCCC
Confidence 999999999999999999999994 356899999999999999753 3468999999999999999999998877
Q ss_pred Ccceee--eccCCceEecCcEEEEecCHHHHHHHHHhhhhccCcccccCCCCCCCceEEEEEEEEEeecccceeEeeeee
Q 047385 155 DNIQIK--ESRVQGILLSGVTEIYVFNSAEALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQELTKEKRVKAGKLL 232 (483)
Q Consensus 155 ~~l~i~--e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~skL~ 232 (483)
..+.++ +++.++++|.|++++.|.+++|++.+|..|.++|++++|.||..|||||+||+|+|.+..........|+|+
T Consensus 210 ~~~~i~~~~~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~kL~ 289 (412)
T 3u06_A 210 KDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEISVGSIN 289 (412)
T ss_dssp CCCCEEECSSCTTSEEETTCCCEECCSHHHHHHHHHHHHHHCC-----CHHHHTTCEEEEEEEEEEEETTTTEEEEEEEE
T ss_pred CCceeeeeecCCCCEEEcceEEEEeCCHHHHHHHHHHHHhcccccccCCCCCCcCceEEEEEEEEEEeCCCCCEEEEEEE
Confidence 665555 677899999999999999999999999999999999999999999999999999999988777788899999
Q ss_pred eeeCCCCccccccCCchhhHHHHHHhhhhHHHHHHHHHHhccCCCCCCCCccCCCcccchhhhhccCCCcceeeeEeeCC
Q 047385 233 LVDLAGSEKAEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSPGKAFHIPYRDSKLTRILQDALGGNSRTALLCCCSP 312 (483)
Q Consensus 233 ~VDLAGsEr~~~t~~~g~~~~E~~~IN~SL~aL~~vI~aL~~~~~~~~~~iPyRdSkLT~lLqdsLgGns~t~mI~~isp 312 (483)
|||||||||.. .+.+++|+.+||+||++||+||.||+. +..|||||||||||||||+||||++|+|||||||
T Consensus 290 lVDLAGSEr~~----~~~rl~E~~~INkSL~aLg~vI~aL~~----~~~hiPyRdSkLT~LLqdsLgGnskt~mI~~vsP 361 (412)
T 3u06_A 290 LVDLAGSESPK----TSTRMTETKNINRSLSELTNVILALLQ----KQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSP 361 (412)
T ss_dssp EEECCCCCC--------------CTTTHHHHHHHHHHHHHHT----TCSCCCGGGSHHHHHHGGGTSTTCEEEEEEEECC
T ss_pred EEECCCCCcCC----ccchhHhHHHHhHHHHHHHHHHHHHhc----cCCCCCccccHHHHHHHHhcCCCceEEEEEEeCC
Confidence 99999999974 468999999999999999999999997 4679999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcccccCC
Q 047385 313 STSNSAESLSTLRFGTRAKHIKASP 337 (483)
Q Consensus 313 ~~~~~~ETlsTL~fa~rak~I~~~~ 337 (483)
+..+++||++||+||+|+++|+..+
T Consensus 362 ~~~~~~ETl~TLrfA~rv~~i~~~~ 386 (412)
T 3u06_A 362 FQDCFQESVKSLRFAASVNSCKMTK 386 (412)
T ss_dssp BGGGHHHHHHHHHHHHHHHHHCC--
T ss_pred ChhhHHHHHHHHHHHHHHhhccccc
Confidence 9999999999999999999998544
No 27
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=100.00 E-value=3.6e-87 Score=681.20 Aligned_cols=314 Identities=31% Similarity=0.452 Sum_probs=248.5
Q ss_pred CCeEEEEEeCCCCccccccCCCceEEEecC---CceEEEeCCCCcceeEeecEEecCCCchHHHHHHHHHHHHHHhhcCc
Q 047385 2 SNITVCARFRPLSSKERSNHGDSVCIHGID---NESFIFKDDKEENFKFGFDRVFYEKSEQAEVFEFLALPIIRDAFNGM 78 (483)
Q Consensus 2 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~ 78 (483)
++|+|+|||||+++.|.. +...|+...+ +..+.+ ..+.|+||+||+++++|++||+.++.|+|+.+++||
T Consensus 22 ~~VrV~vRvRP~~~~e~~--~~~~~v~~~~~~~~~~~~~-----~~~~F~FD~Vf~~~~sQ~~Vy~~~~~plv~~~l~G~ 94 (344)
T 3dc4_A 22 SAVRIAVREAPYRQFLGR--REPSVVQFPPWSDGKSLIV-----DQNEFHFDHAFPATISQDEMYQALILPLVDKLLEGF 94 (344)
T ss_dssp SEEEEEEEECCCC---------CCSEECCSSSCSSEEEE-----TTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCccccc--CCceEEEecCCCCCceEEe-----cCcEEEcceEECCCCCHHHHHHhhccchhhHhhCCC
Confidence 689999999999988743 2233444332 333333 247999999999999999999999999999999999
Q ss_pred ceEEEeeCCCCCCccceecCCCCCCccccccCchhhhHHHHHHhhhcCCC--CcEEEEEEeEEEEecceeecccCCCCCc
Q 047385 79 NGTVITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTVDELFDCMKSSDA--SVKFTIKLSMVEIYMEKVRDLFDLSRDN 156 (483)
Q Consensus 79 n~ti~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~i~~~~~--~~~~~v~vS~~EIyne~v~DLL~~~~~~ 156 (483)
|+||||||||||||||||+|++.....++++|||||++++||+.+..... ...|.|++||+|||||+|+|||++....
T Consensus 95 N~tifAYGQTGSGKTyTM~g~~~~~~~~~~~GIipra~~~LF~~i~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~ 174 (344)
T 3dc4_A 95 QCTALAYGQTGTGKSYSMGMTPPGEILPEHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLGSTPHM 174 (344)
T ss_dssp CEEEEEESSTTSSHHHHHTCSCGGGSCGGGCCHHHHHHHHHHHHHHHSSSSCSSCCEEEEEEEEEESSCEEETTSSCTTS
T ss_pred ceEEEEecCCCCCCCeEEcCCCCCCCCcccCCcHHHHHHHHHHHHHhhhhccccceEEEEEEEEEeCCeeEEccCCCCCC
Confidence 99999999999999999999765433457899999999999999976532 3579999999999999999999876532
Q ss_pred ceeeeccCCceEecCcEEEEecCHHHHHHHHHhhhhccCcccccCCCCCCCceEEEEEEEEEeecccceeEeeeeeeeeC
Q 047385 157 IQIKESRVQGILLSGVTEIYVFNSAEALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQELTKEKRVKAGKLLLVDL 236 (483)
Q Consensus 157 l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~skL~~VDL 236 (483)
.. .+..+.|++++.|.+++|++++|..|.++|++++|.||..|||||+||+|+|.+. ...|+|+||||
T Consensus 175 ~~------~~~~~~~~~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~Ifti~v~~~------~~~skl~lVDL 242 (344)
T 3dc4_A 175 PM------VAARCQRCTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKSK------THHSRMNIVDL 242 (344)
T ss_dssp BC------CSSTTTCSCCEECSSHHHHHHHHHHHHHTCC----------CCEEEEEEEEEECS------SCEEEEEEEEC
T ss_pred cc------ccccccCceecccCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEec------CcEEEEEEEEC
Confidence 11 1233568999999999999999999999999999999999999999999999753 35799999999
Q ss_pred CCCccccccCCchhhHHHHHHhhhhHHHHHHHHHHhccCCCCCCCCccCCCcccchhhhhccCCCcceeeeEeeCCCCCC
Q 047385 237 AGSEKAEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSPGKAFHIPYRDSKLTRILQDALGGNSRTALLCCCSPSTSN 316 (483)
Q Consensus 237 AGsEr~~~t~~~g~~~~E~~~IN~SL~aL~~vI~aL~~~~~~~~~~iPyRdSkLT~lLqdsLgGns~t~mI~~isp~~~~ 316 (483)
|||||.+++++.|.+++|+.+||+||++||+||.+|+. +..|||||||||||||||+||||++|+|||||||+..+
T Consensus 243 AGSEr~~~t~~~g~r~~E~~~INkSL~aLg~vI~aL~~----~~~hiPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~ 318 (344)
T 3dc4_A 243 AGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAA----GHTVIPYRDSVLTTVLQASLTAQSYLTFLACISPHQCD 318 (344)
T ss_dssp CCCCCC-------------CCSCCHHHHHHHHHHHHHT----TCSSCCGGGSHHHHHTTTTSSTTCEEEEEEEECCCGGG
T ss_pred CCCccccccccccchhHHHHHHhHhHHHHHHHHHHHhc----cCCcCCccccHHHHHHHHHhCCCCEEEEEEEeCCchhh
Confidence 99999999999999999999999999999999999997 45699999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccccCCc
Q 047385 317 SAESLSTLRFGTRAKHIKASPH 338 (483)
Q Consensus 317 ~~ETlsTL~fa~rak~I~~~~~ 338 (483)
++||++||+||+||++....|.
T Consensus 319 ~~ETlsTL~fA~ra~~~~~~~~ 340 (344)
T 3dc4_A 319 LSETLSTLRFGTSAKAAALEHH 340 (344)
T ss_dssp HHHHHHHHHHHHHHHHHTTTC-
T ss_pred HHHHHHHHHHHHHHhhcCCCCC
Confidence 9999999999999999876654
No 28
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=100.00 E-value=1.2e-81 Score=700.87 Aligned_cols=322 Identities=34% Similarity=0.538 Sum_probs=256.5
Q ss_pred CCCeEEEEEeC----CCCccccccCCCceEEEec------CCceEEEeCC---CCcceeEeecEEecCCCchHHHHHHHH
Q 047385 1 MSNITVCARFR----PLSSKERSNHGDSVCIHGI------DNESFIFKDD---KEENFKFGFDRVFYEKSEQAEVFEFLA 67 (483)
Q Consensus 1 m~~i~V~vRvR----P~~~~E~~~~~~~~~~~~~------~~~~~~~~~~---~~~~~~F~FD~Vf~~~~~Q~~vf~~~~ 67 (483)
+++++|+|||| |....|...+.....+..+ ....+++..+ ....++|+||+||+++++|++||+.+
T Consensus 373 l~~~rV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~v~~~~- 451 (715)
T 4h1g_A 373 KGNIRVFCRIRNVSSSSSSSSSSSSEDIIQYEAPQDINDESKQELVITRNINNNFSNLRFLFDKIFEREQSNDLVFEEL- 451 (715)
T ss_dssp SCSEEEEEEECCCC-------------BCEEECCC-------CEEEEEEEETTEEEEEEEECSEEECSSCCHHHHGGGT-
T ss_pred HhcCeEEEEEeccccccccccccccccceeccCCCCCCCCCCCeEEEcCCCCCCCCCeEEEeceEeCCCCCHHHHHHHH-
Confidence 36899999999 6666666555444444322 2233444332 24568999999999999999999875
Q ss_pred HHHHHHhhcCcceEEEeeCCCCCCccceecCCCCCCccccccCchhhhHHHHHHhhhcC-CCCcEEEEEEeEEEEeccee
Q 047385 68 LPIIRDAFNGMNGTVITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTVDELFDCMKSS-DASVKFTIKLSMVEIYMEKV 146 (483)
Q Consensus 68 ~plv~~~l~G~n~ti~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~i~~~-~~~~~~~v~vS~~EIyne~v 146 (483)
.|+|+++++|||+||||||||||||||||+|+ ++|||||++++||+.++.. +....|.|+|||+|||||+|
T Consensus 452 ~~~v~~~~~G~n~~i~ayGqtgsGKT~Tm~g~--------~~Giipr~~~~lf~~~~~~~~~~~~~~v~~s~~Eiyne~i 523 (715)
T 4h1g_A 452 SQLIQCSLDGTNVCVFAYGQTGSGKTFTMSHP--------TNGMIPLSLKKIFNDIEELKEKGWSYTVRGKFIEIYNEAI 523 (715)
T ss_dssp HHHHHHHHTTCCEEEEEESSTTSSHHHHHHCT--------TTSHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEE
T ss_pred HHHHHHHhCCceEEEEccCCCCCchhhccCCC--------CCCcHHHHHHHHHHHHHHhhcCCceEEEEEEEEEEECCEE
Confidence 59999999999999999999999999999994 4799999999999999753 34578999999999999999
Q ss_pred ecccCCCC---Ccceeeecc-CCceEecCcEEEEecCHHHHHHHHHhhhhccCcccccCCCCCCCceEEEEEEEEEeecc
Q 047385 147 RDLFDLSR---DNIQIKESR-VQGILLSGVTEIYVFNSAEALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQELTK 222 (483)
Q Consensus 147 ~DLL~~~~---~~l~i~e~~-~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~ 222 (483)
+|||++.. ..+.++++. .++++|.||+++.|.|++|++++|..|.++|++++|.+|..|||||+||+|+|++....
T Consensus 524 ~DLl~~~~~~~~~~~~~~~~~~g~~~v~~l~~~~v~~~~~~~~~~~~g~~~r~~~~t~~n~~ssRSH~i~~i~~~~~~~~ 603 (715)
T 4h1g_A 524 VDLLNPKIDPNTKYEIKHDDIAGKTTVTNVSTIDIKSPEQAITILNQANKKRSTAATKSNDHSSRSHSIFIIDLQGYNSL 603 (715)
T ss_dssp EESSSCCCCTTCCCCEEEETTTTEEEETTCCCEECSCHHHHHHHHHHHHCC----------CGGGSEEEEEEEEEEEETT
T ss_pred EECCCCCCCCCCcceeEEecCCCCEEEeCCEEEEcCCHHHHHHHHHHHHhccCcccccccCccccccEEEEEEEEEEecC
Confidence 99998753 356677655 45699999999999999999999999999999999999999999999999999998877
Q ss_pred cceeEeeeeeeeeCCCCccccccCCchhhHHHHHHhhhhHHHHHHHHHHhccCCCCCCCCccCCCcccchhhhhccCCCc
Q 047385 223 EKRVKAGKLLLVDLAGSEKAEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSPGKAFHIPYRDSKLTRILQDALGGNS 302 (483)
Q Consensus 223 ~~~~~~skL~~VDLAGsEr~~~t~~~g~~~~E~~~IN~SL~aL~~vI~aL~~~~~~~~~~iPyRdSkLT~lLqdsLgGns 302 (483)
......|+|+|||||||||..++++.|.|++|+.+||+||++||+||.+|+.+ +..|||||||||||||||+|||||
T Consensus 604 ~~~~~~~~l~lvDLAGsEr~~~~~~~g~~~~E~~~IN~sL~~L~~vi~al~~~---~~~~vpyR~SkLT~lL~~slggn~ 680 (715)
T 4h1g_A 604 TKESSYGTLNLIDLAGSERLNNSRAEGDRLKETQAINKSLSCLGDVIHSLNLK---DGSHVPYRNSKLTYLLKHSLGGNS 680 (715)
T ss_dssp TCCEEEEEEEEEECCCCCC---------CHHHHHHHHHHHHHHHHHHHHHHHC---SCCCCCGGGCHHHHHTGGGTSTTC
T ss_pred CCCEeEEEEEEEeCCCcccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhhc---CCCcCCCccCHHHHHHHhhcCCCc
Confidence 77888999999999999999999999999999999999999999999999863 457999999999999999999999
Q ss_pred ceeeeEeeCCCCCCHHHHHHHHHHHHHhcccc
Q 047385 303 RTALLCCCSPSTSNSAESLSTLRFGTRAKHIK 334 (483)
Q Consensus 303 ~t~mI~~isp~~~~~~ETlsTL~fa~rak~I~ 334 (483)
+|+|||||||+..+++||++||+||+|||+|+
T Consensus 681 ~t~~i~~isp~~~~~~et~~tL~fa~r~~~i~ 712 (715)
T 4h1g_A 681 KTLMFVNISPLTKDLNETINSLRFATKVNNTR 712 (715)
T ss_dssp EEEEEEEECCBGGGHHHHHHHHHHHHHHCC--
T ss_pred eEEEEEEECCChhhHHHHHHHHHHHHHhccce
Confidence 99999999999999999999999999999997
No 29
>2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9
Probab=99.97 E-value=5.5e-32 Score=226.13 Aligned_cols=86 Identities=62% Similarity=0.874 Sum_probs=81.3
Q ss_pred HHhhhhHHHHHHHHHHhccCCCCCCCCccCCCcccchhhhhccCCCcceeeeEeeCCCCCCHHHHHHHHHHHHHhccccc
Q 047385 256 KTINKSLSALGNVISALTCGSPGKAFHIPYRDSKLTRILQDALGGNSRTALLCCCSPSTSNSAESLSTLRFGTRAKHIKA 335 (483)
Q Consensus 256 ~~IN~SL~aL~~vI~aL~~~~~~~~~~iPyRdSkLT~lLqdsLgGns~t~mI~~isp~~~~~~ETlsTL~fa~rak~I~~ 335 (483)
.+||+||++||+||.+|+++ +..||||||||||+||||+||||++|+||+||||+..+++||++||+||+||++|+|
T Consensus 2 ~~IN~SL~~Lg~vI~aL~~~---~~~hvPyRdSkLT~lL~dsLgGnskt~mi~~vsp~~~~~~ETl~TL~fA~rak~i~~ 78 (100)
T 2kin_B 2 KNINKSLSALGNVISALAEG---TKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKN 78 (100)
T ss_dssp CBSSHHHHHHHHHHHHHHHT---CCSSCCGGGCHHHHHTHHHHHSSEEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCEE
T ss_pred CcchHHHHHHHHHHHHHHhc---CCCCCCCccchHHHHHHHHhcCCCceeEEEEeCcccchHHHHHHHHHHHHHHHhccC
Confidence 57999999999999999974 357999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccc
Q 047385 336 SPHAHCSKE 344 (483)
Q Consensus 336 ~~~~n~~~~ 344 (483)
.|.+|.+..
T Consensus 79 ~~~~n~~~~ 87 (100)
T 2kin_B 79 TVSVNLELT 87 (100)
T ss_dssp EECCEEECC
T ss_pred cceeccCCC
Confidence 999998765
No 30
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=99.96 E-value=8.7e-30 Score=219.79 Aligned_cols=83 Identities=63% Similarity=0.901 Sum_probs=78.8
Q ss_pred hhhHHHHHHHHHHhccCCCCCCCCccCCCcccchhhhhccCCCcceeeeEeeCCCCCCHHHHHHHHHHHHHhcccccCCc
Q 047385 259 NKSLSALGNVISALTCGSPGKAFHIPYRDSKLTRILQDALGGNSRTALLCCCSPSTSNSAESLSTLRFGTRAKHIKASPH 338 (483)
Q Consensus 259 N~SL~aL~~vI~aL~~~~~~~~~~iPyRdSkLT~lLqdsLgGns~t~mI~~isp~~~~~~ETlsTL~fa~rak~I~~~~~ 338 (483)
|+||++||+||.+|+++ +..||||||||||+||||+||||++|+||+||||+..+++||++||+||+||++|+|.|.
T Consensus 1 N~SL~~Lg~vi~aL~~~---~~~hvPyRdSkLT~lL~dsLggn~~t~~i~~isp~~~~~~eTl~TL~fa~rak~i~n~~~ 77 (117)
T 3kin_B 1 NKSLSALGNVISALAEG---TKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTVS 77 (117)
T ss_dssp CCHHHHHHHHHHHHHHS---CCSSCCGGGSHHHHHTHHHHHSSSEEEEEEEECCSGGGHHHHHHHHHHHHHHTTCEEEEC
T ss_pred CCCHHHHHHHHHHHHhC---CCCCCCCcchHHHHHHHHHcCCCccceeeeeeCCCcccHHHHHHHHHHHHHhCcccCCce
Confidence 89999999999999984 356999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccc
Q 047385 339 AHCSKE 344 (483)
Q Consensus 339 ~n~~~~ 344 (483)
+|.+..
T Consensus 78 ~n~~~~ 83 (117)
T 3kin_B 78 VNLELT 83 (117)
T ss_dssp CCBCCC
T ss_pred ecCcCC
Confidence 998764
No 31
>2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor homology domain, kinesin, motor domain, microtubule-binding; 1.60A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.7e-26 Score=223.90 Aligned_cols=260 Identities=10% Similarity=0.064 Sum_probs=178.2
Q ss_pred CCeEEEEEeCCCCccccccCCCceEEEecCCceEEEeCCCCcceeEeecEEecCCCchH--HHHHHHHHHHHHHhhc-Cc
Q 047385 2 SNITVCARFRPLSSKERSNHGDSVCIHGIDNESFIFKDDKEENFKFGFDRVFYEKSEQA--EVFEFLALPIIRDAFN-GM 78 (483)
Q Consensus 2 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~Vf~~~~~Q~--~vf~~~~~plv~~~l~-G~ 78 (483)
|+|||+|||||..-+ ..|........+.. .. ..+.|.||+||++.+.|+ +||++ +.++|+.+++ ||
T Consensus 24 GnIRVFcrvrp~~~p-------~~~~v~y~~~~I~v-~~--~~k~f~FDRVf~p~s~Qe~~~vf~E-~~~~i~scLd~Gy 92 (298)
T 2o0a_A 24 GTMRCYAYVMEQNLP-------ENLLFDYENGVITQ-GL--SEHVYKFNRVIPHLKVSEDKFFTQE-YSVYHDMCLNQKK 92 (298)
T ss_dssp TCCEEEEEECGGGSC-------TTEEEETTTTEEEE-TT--TCCEEECSEEEETTTSCHHHHHHHT-THHHHHHHHHTTC
T ss_pred CceEEEEEeccccCC-------ccceeecCccceee-cC--CCceEEeeeEECccccccHHHHHHH-HHHHHHHHHhCCC
Confidence 899999999996411 23533333344443 22 337999999999999999 99999 7799999999 99
Q ss_pred ceEEEeeCCCCCCccceecCCCCCCccccccCchhhhHHHHHHhhhc-CCCCcEEEEEEeEEEEe-cceeecccC--CCC
Q 047385 79 NGTVITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTVDELFDCMKS-SDASVKFTIKLSMVEIY-MEKVRDLFD--LSR 154 (483)
Q Consensus 79 n~ti~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~i~~-~~~~~~~~v~vS~~EIy-ne~v~DLL~--~~~ 154 (483)
|+||||||||||||| ||++..+|...+. .. +.|.+.+||+||| ||.++|||. +.+
T Consensus 93 NvcIfSyGQTGsGKT-------------------~ral~q~f~~~~~~~~--~~Y~~tlq~veLy~Ne~~~DLL~~~~~~ 151 (298)
T 2o0a_A 93 NFNLISLSTTPHGSL-------------------RESLIKFLAEKDTIYQ--KQYVITLQFVFLSDDEFSQDMLLDYSHN 151 (298)
T ss_dssp CEEEEEECSSCCHHH-------------------HHHHHHHHHSTTSHHH--HHEEEEEEEEEEECC-CEEETTSCCC--
T ss_pred ceEEEEECCCCCCcc-------------------HHHHHHHHHHhhhhcc--cceEEEEEEEEEecCCchHHhcCCCCCC
Confidence 999999999999998 9999999987755 32 7999999999999 999999995 233
Q ss_pred CcceeeeccCCceEecCcEEEEecC-HHHHHHHHHhhhhccCcccccCCCCCCCceEEEEEEEEEeec---ccceeEeee
Q 047385 155 DNIQIKESRVQGILLSGVTEIYVFN-SAEALQSLASGISNRAVGETQMNMASSRSHCIYIFTVQQELT---KEKRVKAGK 230 (483)
Q Consensus 155 ~~l~i~e~~~~g~~v~gl~~~~v~s-~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~---~~~~~~~sk 230 (483)
..+.|+.+..++.+|.|++.+.|.+ ++|+..++.-+... ..|+ +.-.|+.+.+...+. ++.....--
T Consensus 152 ~k~eIk~~~~g~~iv~~s~~i~V~~~~edv~~~~~~~~~~------~~~~---~gi~i~k~~~~~~~~~~~~~~~~~~~d 222 (298)
T 2o0a_A 152 DKDSIKLKFEKHSISLDSKLVIIENGLEDLPLNFSCDEHP------NLPH---SGMGIIKVQFFPRDSKSDGNNDPVPVD 222 (298)
T ss_dssp ----CEEEECSSCEEEESCCEEESSGGGGSCTTTTCC----------------CEEEEEEEEEEESCC-------CCCEE
T ss_pred CcceEEecCCCCEEecccEEEEccccHHHHHHHhhccccc------ccCC---CCceEEEEEEecCcccccccCCCCceE
Confidence 3678888888999999999999999 89888877322211 1121 335566666665322 111222335
Q ss_pred eeeeeCCCCccccccCCchhhHHHHHHhhhhHHHHHHHHHHhccCCCCCCCCccCCCcccchhhhhccCCCcceeeeEee
Q 047385 231 LLLVDLAGSEKAEKTGAEGKVLEEAKTINKSLSALGNVISALTCGSPGKAFHIPYRDSKLTRILQDALGGNSRTALLCCC 310 (483)
Q Consensus 231 L~~VDLAGsEr~~~t~~~g~~~~E~~~IN~SL~aL~~vI~aL~~~~~~~~~~iPyRdSkLT~lLqdsLgGns~t~mI~~i 310 (483)
++|+.+.... +...|.+ ++..+ -+-.|+++-+|+.-|. .++-+++.++
T Consensus 223 ~yf~e~~~~~--------------------~~~~l~~---~~~~~--------~~~~spi~~il~~ll~-~tks~~~~~l 270 (298)
T 2o0a_A 223 FYFIELNNLK--------------------SIEQFDK---SIFKK--------ESCETPIALVLKKLIS-DTKSFFLLNL 270 (298)
T ss_dssp EEEEEECSHH--------------------HHHHHHH---HHHTC---------CCCSHHHHHHHHHHH-HSBCEEEEEE
T ss_pred EEEEEeCCHH--------------------HHHHHHh---hcccc--------cccCCcHHHHHHHHHh-cCcceEEEEe
Confidence 6777664221 1222333 22221 2456888889988773 4578999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhcccccCCc
Q 047385 311 SPSTSNSAESLSTLRFGTRAKHIKASPH 338 (483)
Q Consensus 311 sp~~~~~~ETlsTL~fa~rak~I~~~~~ 338 (483)
..+.. .-.-|..+++..+++|..+
T Consensus 271 ~~~~~----~~~lL~~s~~i~~~~~~~~ 294 (298)
T 2o0a_A 271 NDSKN----VNKLLTISEEVQTQLCKRK 294 (298)
T ss_dssp CCGGG----HHHHHHHHHHHHHHTC---
T ss_pred cCCCc----hhHHHHHHHHhhcccCccc
Confidence 86543 3348999999999887543
No 32
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.01 E-value=0.0069 Score=54.45 Aligned_cols=51 Identities=14% Similarity=0.083 Sum_probs=36.3
Q ss_pred eEeecEEecCCCchHHHHHHHHHHHHHHhhcCcceEEEeeCCCCCCccceec
Q 047385 46 KFGFDRVFYEKSEQAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSME 97 (483)
Q Consensus 46 ~F~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm~ 97 (483)
.++||.....+..|.++++. +..+++++-......++-||++|+|||+.+.
T Consensus 6 ~~~f~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~ 56 (180)
T 3ec2_A 6 NANLDTYHPKNVSQNRALLT-IRVFVHNFNPEEGKGLTFVGSPGVGKTHLAV 56 (180)
T ss_dssp TCCSSSCCCCSHHHHHHHHH-HHHHHHSCCGGGCCEEEECCSSSSSHHHHHH
T ss_pred hCccccccCCCHHHHHHHHH-HHHHHHhccccCCCEEEEECCCCCCHHHHHH
Confidence 45788776656678888866 4566665543334557779999999999874
No 33
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=93.64 E-value=0.024 Score=51.65 Aligned_cols=52 Identities=17% Similarity=0.284 Sum_probs=34.9
Q ss_pred eeEeecEEecCCCchHHHHHHHHHHHHHHhhcCcc-eEEEeeCCCCCCccceec
Q 047385 45 FKFGFDRVFYEKSEQAEVFEFLALPIIRDAFNGMN-GTVITYGQTGAGKTFSME 97 (483)
Q Consensus 45 ~~F~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n-~ti~ayG~tgSGKT~Tm~ 97 (483)
..++||.....+..+..+++. +..++...-.+.. ..|+-||++|+|||+.+.
T Consensus 20 ~~~~f~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~ 72 (202)
T 2w58_A 20 LRASLSDVDLNDDGRIKAIRF-AERFVAEYEPGKKMKGLYLHGSFGVGKTYLLA 72 (202)
T ss_dssp GCCCTTSSCCSSHHHHHHHHH-HHHHHHHCCSSCCCCEEEEECSTTSSHHHHHH
T ss_pred HcCCHhhccCCChhHHHHHHH-HHHHHHHhhhccCCCeEEEECCCCCCHHHHHH
Confidence 356788766655567777775 3455554433322 578889999999999864
No 34
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=92.90 E-value=0.036 Score=54.78 Aligned_cols=52 Identities=15% Similarity=0.322 Sum_probs=34.3
Q ss_pred eEeecEEecCCCchHHHHHHHHHHHHHHhhcCcceEEEeeCCCCCCccceecC
Q 047385 46 KFGFDRVFYEKSEQAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 46 ~F~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm~G 98 (483)
.++||.+...+..+..++.. +..+++..-.+....|+-||++|+||||.+..
T Consensus 120 ~~tfd~f~~~~~~~~~~~~~-~~~~i~~~~~~~~~~lll~G~~GtGKT~La~a 171 (308)
T 2qgz_A 120 HIHLSDIDVNNASRMEAFSA-ILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAA 171 (308)
T ss_dssp SCCGGGSCCCSHHHHHHHHH-HHHHHHHCSCSSCCEEEEECSTTSSHHHHHHH
T ss_pred hCCHhhCcCCChHHHHHHHH-HHHHHHhccccCCceEEEECCCCCCHHHHHHH
Confidence 35677655444355666663 44566654444456788899999999999754
No 35
>4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=92.30 E-value=0.94 Score=44.56 Aligned_cols=210 Identities=15% Similarity=0.174 Sum_probs=110.9
Q ss_pred CcceeEeecEEecCCC-chHHHHHHHHHHHHHHhh-cCcceEEEeeCCCCCCccceecCCCCCCccccccCchhhhHHHH
Q 047385 42 EENFKFGFDRVFYEKS-EQAEVFEFLALPIIRDAF-NGMNGTVITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTVDEL 119 (483)
Q Consensus 42 ~~~~~F~FD~Vf~~~~-~Q~~vf~~~~~plv~~~l-~G~n~ti~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~L 119 (483)
.....|.|++|++... +-.+++..-+++.++-++ .+.|+.|+..|..- ++ ..-..|
T Consensus 89 ~~~~~y~FnRiIp~~~~~e~~~l~qE~q~y~DmcL~~~~NfslIsis~~~-------------------w~---~Lr~~l 146 (333)
T 4etp_B 89 LSEHVYKFNRVIPHLKVSEDCFFTQEYSVYHDMALNQKKNFNLISLSTTP-------------------HG---SLRESL 146 (333)
T ss_dssp -CCCEEECSEEEETTTCCHHHHHHHTTHHHHHHHHHTTCCEEEEEEESSC-------------------CC---HHHHHH
T ss_pred CCcceEEEeeeechhhcchHHHHHHHHHHHHHHHHccCCCeeEEEecCCC-------------------cH---HHHHHH
Confidence 3568999999998775 234444444789999999 89999999987531 11 123333
Q ss_pred HHhhhcCCC--CcEEEEEEeEEEEecce-eecccCCCC----CcceeeeccCCceEecCcEEEEecCHHHHHHHHHhhhh
Q 047385 120 FDCMKSSDA--SVKFTIKLSMVEIYMEK-VRDLFDLSR----DNIQIKESRVQGILLSGVTEIYVFNSAEALQSLASGIS 192 (483)
Q Consensus 120 F~~i~~~~~--~~~~~v~vS~~EIyne~-v~DLL~~~~----~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~ 192 (483)
+..+..++. .+.|.+.+-|+.+.++. ..|||.+.. +.+.++-+. ..+-+ +=+.+.+.+..+.+..+.+
T Consensus 147 L~fi~~k~~~Y~~~y~i~lQ~V~Lse~~~S~DlL~~~~~~~~~~I~lkiee-~sI~l-dS~~i~i~~~~~~l~~~~k--- 221 (333)
T 4etp_B 147 IKFLAEKDTIYQKQYVITLQFVFLSDDEFSQDMLLDYSHNDKDSIKLKFEK-HSISL-DSKLVIIENGLEDLPLNFS--- 221 (333)
T ss_dssp HHHHHSTTCHHHHHEEEEEEEEECCSSSCCEESSCC----------CEEET-TEEEC-CSCCEEESSGGGGSCTTSS---
T ss_pred HHHHHhcccccccceEEEEEEEEEcCCCchhhhhccccccCCCCceEEeec-ceEee-cceEEEeccccccchhhhc---
Confidence 444433310 25789999999988776 799997652 223222211 12222 2234555444332221110
Q ss_pred ccCcccccCCCCCCCceEEEEEEEEEeecc---cceeEeeeeeeeeCCCCccccccCCchhhHHHHHHhhhhHHHHHHHH
Q 047385 193 NRAVGETQMNMASSRSHCIYIFTVQQELTK---EKRVKAGKLLLVDLAGSEKAEKTGAEGKVLEEAKTINKSLSALGNVI 269 (483)
Q Consensus 193 ~R~~~~t~~n~~SSRSH~if~i~v~~~~~~---~~~~~~skL~~VDLAGsEr~~~t~~~g~~~~E~~~IN~SL~aL~~vI 269 (483)
..+ .+..-...-.|+-+.+...... ...+..-.++||.+-+.. .+..|.++|
T Consensus 222 ----l~~-~~~~~~~GI~IlKfqf~~~~~~~~~n~~~~~~~fYFiEi~~~~--------------------ti~~l~~~i 276 (333)
T 4etp_B 222 ----ADE-HPNLPHSGMGIIKVQFFPRDSKSDGNNDPVPVDFYFIELNNLK--------------------SIEQFDKSI 276 (333)
T ss_dssp ----CCC---------CEEEEEEEEECC--------CCCEEEEEEEECSHH--------------------HHHHHHSCC
T ss_pred ----ccc-CCCCCCCCceEEEEEEEecCcccccccCCcceeEEEEEecChh--------------------HHHHHHhhc
Confidence 000 0001112455677777665432 112234478888886443 122233332
Q ss_pred HHhccCCCCCCCCccCCCcccchhhhhccCCCcceeeeEeeCCCCC
Q 047385 270 SALTCGSPGKAFHIPYRDSKLTRILQDALGGNSRTALLCCCSPSTS 315 (483)
Q Consensus 270 ~aL~~~~~~~~~~iPyRdSkLT~lLqdsLgGns~t~mI~~isp~~~ 315 (483)
.- ++ .-.|+.+-+|+--| -.++-++|.++.-...
T Consensus 277 ~~------~~-----~~~spi~~ilkkLl-~~TKS~flfnl~~~~~ 310 (333)
T 4etp_B 277 FK------KE-----SAETPIALVLKKLI-SDTKSFFLLNLNDSKN 310 (333)
T ss_dssp ---------------CCCCHHHHHHHHHH-HHSBCEEEEEECCSTT
T ss_pred Cc------cc-----ccCCCHHHHHHHHH-hhCcceEEEEcCCcch
Confidence 21 11 23467777887766 3468899999987664
No 36
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.93 E-value=0.53 Score=48.73 Aligned_cols=120 Identities=22% Similarity=0.323 Sum_probs=67.4
Q ss_pred EEEEEeCCCCccccccCCCceEEEecCCceEEEeCCCC----------cceeEeecEEecCCCchHHHHHHHHHHHHH-H
Q 047385 5 TVCARFRPLSSKERSNHGDSVCIHGIDNESFIFKDDKE----------ENFKFGFDRVFYEKSEQAEVFEFLALPIIR-D 73 (483)
Q Consensus 5 ~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~F~FD~Vf~~~~~Q~~vf~~~~~plv~-~ 73 (483)
+.+|++.....++....+..+.+.......+.+.++.. +.-.-+||.|-+-+.--+++.+.+..|+.. .
T Consensus 117 ~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~d~~v~~~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~ 196 (428)
T 4b4t_K 117 SYVVRILSTLDRELLKPSMSVALHRHSNALVDILPPDSDSSISVMGENEKPDVTYADVGGLDMQKQEIREAVELPLVQAD 196 (428)
T ss_dssp EEEECBCSSSCTTTCCTTCEEEECSSSCCEEEEECSCCCCSSCCCEEESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHH
T ss_pred EEEEeccccccHhhCCCCceeeeecchhhHHhhcCcccCcchhhccCCCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHH
Confidence 45677777666665443333333221222222222211 112357788877766556666666666642 3
Q ss_pred hhc--Cc--ceEEEeeCCCCCCccceec--------------CCCCCCccccccCchhhhHHHHHHhhhcCC
Q 047385 74 AFN--GM--NGTVITYGQTGAGKTFSME--------------GPSILACDEQKKGLLQRTVDELFDCMKSSD 127 (483)
Q Consensus 74 ~l~--G~--n~ti~ayG~tgSGKT~Tm~--------------G~~~~~~~~~~~Giipr~~~~LF~~i~~~~ 127 (483)
.+. |. .-.|+-||++|+|||.+.- |+... ..-.|--.+.++.+|.......
T Consensus 197 ~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~---~~~~Ge~e~~ir~lF~~A~~~a 265 (428)
T 4b4t_K 197 LYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFV---HKYLGEGPRMVRDVFRLARENA 265 (428)
T ss_dssp HHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTC---CSSCSHHHHHHHHHHHHHHHTC
T ss_pred HHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhh---ccccchhHHHHHHHHHHHHHcC
Confidence 333 32 2348999999999997642 11111 1235777889999999887663
No 37
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.72 E-value=0.27 Score=51.05 Aligned_cols=51 Identities=29% Similarity=0.471 Sum_probs=36.1
Q ss_pred eEeecEEecCCCchHHHHHHHHHHHHH-Hhhc--Cc--ceEEEeeCCCCCCcccee
Q 047385 46 KFGFDRVFYEKSEQAEVFEFLALPIIR-DAFN--GM--NGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 46 ~F~FD~Vf~~~~~Q~~vf~~~~~plv~-~~l~--G~--n~ti~ayG~tgSGKT~Tm 96 (483)
.-+||.|-+.+..-+++.+.+..|+.. ..+. |. --.|+-||++|+|||.+.
T Consensus 177 ~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 177 TETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHH
T ss_pred CCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHH
Confidence 457888888776667777777777752 3333 32 346888999999998764
No 38
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=89.12 E-value=0.17 Score=49.29 Aligned_cols=48 Identities=17% Similarity=0.278 Sum_probs=29.9
Q ss_pred ecEEecCCCchHHHHHHHHHHHHHHhhc--Ccc--eEEEeeCCCCCCcccee
Q 047385 49 FDRVFYEKSEQAEVFEFLALPIIRDAFN--GMN--GTVITYGQTGAGKTFSM 96 (483)
Q Consensus 49 FD~Vf~~~~~Q~~vf~~~~~plv~~~l~--G~n--~ti~ayG~tgSGKT~Tm 96 (483)
||..|+..---..+.+.++..++...+. |.. ..|+-||++|+|||+..
T Consensus 2 ~~~~~~~~y~~~~~~~~~~~~~~k~~l~~~~~~~p~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 2 LDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQC 53 (293)
T ss_dssp CCCEETTEECCHHHHHHHHHHHHHTTSCCTTCCCCSEEEEEECTTSCHHHHH
T ss_pred cccccCcccCCHHHHHHHHHHHHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 3444433322345666667677776654 222 35788999999999874
No 39
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=88.94 E-value=0.21 Score=43.77 Aligned_cols=29 Identities=24% Similarity=0.295 Sum_probs=21.2
Q ss_pred HHHHHhhcCcceEEEeeCCCCCCccceec
Q 047385 69 PIIRDAFNGMNGTVITYGQTGAGKTFSME 97 (483)
Q Consensus 69 plv~~~l~G~n~ti~ayG~tgSGKT~Tm~ 97 (483)
.+++.+..+....++-||++|+|||+.+.
T Consensus 33 ~l~~~l~~~~~~~~ll~G~~G~GKT~l~~ 61 (195)
T 1jbk_A 33 RTIQVLQRRTKNNPVLIGEPGVGKTAIVE 61 (195)
T ss_dssp HHHHHHTSSSSCEEEEECCTTSCHHHHHH
T ss_pred HHHHHHhcCCCCceEEECCCCCCHHHHHH
Confidence 33444445666678899999999999863
No 40
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.53 E-value=0.36 Score=50.08 Aligned_cols=51 Identities=29% Similarity=0.498 Sum_probs=34.7
Q ss_pred eEeecEEecCCCchHHHHHHHHHHHH-HHhhc--Cc--ceEEEeeCCCCCCcccee
Q 047385 46 KFGFDRVFYEKSEQAEVFEFLALPII-RDAFN--GM--NGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 46 ~F~FD~Vf~~~~~Q~~vf~~~~~plv-~~~l~--G~--n~ti~ayG~tgSGKT~Tm 96 (483)
..+||.|-+-+..-+++-+.+..|+. ...+. |. .-.|+-||++|+|||++.
T Consensus 177 ~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 177 EITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp SSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHH
T ss_pred CCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHH
Confidence 45688887766555667776666665 23343 32 246889999999998764
No 41
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=87.41 E-value=0.25 Score=43.31 Aligned_cols=29 Identities=28% Similarity=0.289 Sum_probs=21.1
Q ss_pred HHHHHhhcCcceEEEeeCCCCCCccceec
Q 047385 69 PIIRDAFNGMNGTVITYGQTGAGKTFSME 97 (483)
Q Consensus 69 plv~~~l~G~n~ti~ayG~tgSGKT~Tm~ 97 (483)
.++..+..+....++-||++|+|||+.+.
T Consensus 33 ~l~~~l~~~~~~~vll~G~~G~GKT~la~ 61 (187)
T 2p65_A 33 RAIQILSRRTKNNPILLGDPGVGKTAIVE 61 (187)
T ss_dssp HHHHHHTSSSSCEEEEESCGGGCHHHHHH
T ss_pred HHHHHHhCCCCCceEEECCCCCCHHHHHH
Confidence 34444445666678999999999998763
No 42
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=87.15 E-value=0.25 Score=46.96 Aligned_cols=45 Identities=22% Similarity=0.268 Sum_probs=21.7
Q ss_pred eEeecEEecCCCchHHHHHHHHHHHHHHhhcCcceEEEeeCCCCCCcccee
Q 047385 46 KFGFDRVFYEKSEQAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 46 ~F~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm 96 (483)
.|+||.+.+.+..-..+.+. +..+.. .+..|+-||++|+|||+..
T Consensus 2 ~~~f~~~ig~~~~~~~~~~~-----~~~~~~-~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 2 AEYKDNLLGEANSFLEVLEQ-----VSHLAP-LDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp --------CCCHHHHHHHHH-----HHHHTT-SCSCEEEECCTTSCHHHHH
T ss_pred CcccccceeCCHHHHHHHHH-----HHHHhC-CCCCEEEECCCCCcHHHHH
Confidence 47889887654433333322 223222 3456788999999999875
No 43
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=87.01 E-value=0.2 Score=47.58 Aligned_cols=51 Identities=20% Similarity=0.193 Sum_probs=31.5
Q ss_pred eeEeecEEecCCCchHHHHHHHHHHHH-----HHhhcCcceEEEeeCCCCCCcccee
Q 047385 45 FKFGFDRVFYEKSEQAEVFEFLALPII-----RDAFNGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 45 ~~F~FD~Vf~~~~~Q~~vf~~~~~plv-----~~~l~G~n~ti~ayG~tgSGKT~Tm 96 (483)
..+.||.+.+.+...+.+.+. +..+- ..+-......|+-||++|+|||+..
T Consensus 6 ~~~~~~~i~G~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 6 PNVRFKDMAGNEEAKEEVVEI-VDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CCCCSTTSSSCTTTHHHHHHH-HHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHHH-HHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHH
Confidence 356788888877665555543 32211 1111122334888999999999886
No 44
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.63 E-value=1.8 Score=44.68 Aligned_cols=79 Identities=23% Similarity=0.385 Sum_probs=50.9
Q ss_pred eEeecEEecCCCchHHHHHHHHHHHHH-Hhhc--Cc--ceEEEeeCCCCCCcccee--------------cCCCCCCccc
Q 047385 46 KFGFDRVFYEKSEQAEVFEFLALPIIR-DAFN--GM--NGTVITYGQTGAGKTFSM--------------EGPSILACDE 106 (483)
Q Consensus 46 ~F~FD~Vf~~~~~Q~~vf~~~~~plv~-~~l~--G~--n~ti~ayG~tgSGKT~Tm--------------~G~~~~~~~~ 106 (483)
.-+||.|-+-+..-+++.+.+..|+.. ..+. |. --.|+-||++|+|||.+. .|+... .
T Consensus 178 ~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~---s 254 (437)
T 4b4t_I 178 TESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELI---Q 254 (437)
T ss_dssp CCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGC---C
T ss_pred CCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhh---h
Confidence 356777776655556666666666642 2333 32 346899999999999654 221111 1
Q ss_pred cccCchhhhHHHHHHhhhcCC
Q 047385 107 QKKGLLQRTVDELFDCMKSSD 127 (483)
Q Consensus 107 ~~~Giipr~~~~LF~~i~~~~ 127 (483)
.-.|--.+.++.+|.......
T Consensus 255 k~vGesek~ir~lF~~Ar~~a 275 (437)
T 4b4t_I 255 KYLGDGPRLCRQIFKVAGENA 275 (437)
T ss_dssp SSSSHHHHHHHHHHHHHHHTC
T ss_pred ccCchHHHHHHHHHHHHHhcC
Confidence 235777889999999887764
No 45
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=86.46 E-value=0.21 Score=47.75 Aligned_cols=51 Identities=20% Similarity=0.303 Sum_probs=31.9
Q ss_pred eEeecEEecCCCchHHHHHHHHHHHHH-----HhhcCcceEEEeeCCCCCCcccee
Q 047385 46 KFGFDRVFYEKSEQAEVFEFLALPIIR-----DAFNGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 46 ~F~FD~Vf~~~~~Q~~vf~~~~~plv~-----~~l~G~n~ti~ayG~tgSGKT~Tm 96 (483)
.++||.+.+.+..-+.+.+.+..|+.. ..--.....|+-||++|+|||+..
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 577888887665555555544433221 111123445888999999999875
No 46
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=86.19 E-value=0.24 Score=48.29 Aligned_cols=51 Identities=24% Similarity=0.381 Sum_probs=31.8
Q ss_pred eEeecEEecCCCchHHHHHHHHHHHHH-Hhh----cCcceEEEeeCCCCCCcccee
Q 047385 46 KFGFDRVFYEKSEQAEVFEFLALPIIR-DAF----NGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 46 ~F~FD~Vf~~~~~Q~~vf~~~~~plv~-~~l----~G~n~ti~ayG~tgSGKT~Tm 96 (483)
.++||.|.+.+..-+.+.+.+..|+.. ..+ -.....|+-||++|+|||+.+
T Consensus 11 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 11 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHH
Confidence 456788877655555565555544321 111 123446888999999999875
No 47
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=85.55 E-value=0.33 Score=48.21 Aligned_cols=22 Identities=9% Similarity=-0.022 Sum_probs=19.2
Q ss_pred hcCcceEEEeeCCCCCCcccee
Q 047385 75 FNGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 75 l~G~n~ti~ayG~tgSGKT~Tm 96 (483)
-.|...+++-||++|+|||.+.
T Consensus 41 ~~~~~~~lli~GpPGTGKT~~v 62 (318)
T 3te6_A 41 MSSQNKLFYITNADDSTKFQLV 62 (318)
T ss_dssp HTTCCCEEEEECCCSHHHHHHH
T ss_pred cCCCCCeEEEECCCCCCHHHHH
Confidence 3678889999999999999875
No 48
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=85.54 E-value=0.29 Score=46.17 Aligned_cols=52 Identities=19% Similarity=0.137 Sum_probs=28.7
Q ss_pred eeEeecEEecCCCchHHHHHHHHHH-----HHHHhhcCcceEEEeeCCCCCCccceec
Q 047385 45 FKFGFDRVFYEKSEQAEVFEFLALP-----IIRDAFNGMNGTVITYGQTGAGKTFSME 97 (483)
Q Consensus 45 ~~F~FD~Vf~~~~~Q~~vf~~~~~p-----lv~~~l~G~n~ti~ayG~tgSGKT~Tm~ 97 (483)
..++||.+.+.+....++- .+... .+..+---....++-||++|+|||+.+-
T Consensus 11 ~~~~~~~i~g~~~~~~~l~-~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~ 67 (254)
T 1ixz_A 11 PKVTFKDVAGAEEAKEELK-EIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLAR 67 (254)
T ss_dssp CSCCGGGCCSCHHHHHHHH-HHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHH
T ss_pred CCCCHHHhCCcHHHHHHHH-HHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHH
Confidence 3578888877654333332 22211 1222111112238899999999998863
No 49
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=85.51 E-value=0.33 Score=47.54 Aligned_cols=50 Identities=16% Similarity=0.371 Sum_probs=30.1
Q ss_pred eEeecEEecCCCchHHHHHHHHHHHHHHhhcCcceEEEeeCCCCCCccceecC
Q 047385 46 KFGFDRVFYEKSEQAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 46 ~F~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm~G 98 (483)
.|+||..... ..+...+.. +..++..-- +....++-||++|+|||+.+..
T Consensus 7 ~~~f~~fv~g-~~~~~a~~~-~~~~~~~~~-~~~~~lll~G~~GtGKT~la~~ 56 (324)
T 1l8q_A 7 KYTLENFIVG-EGNRLAYEV-VKEALENLG-SLYNPIFIYGSVGTGKTHLLQA 56 (324)
T ss_dssp TCCSSSCCCC-TTTHHHHHH-HHHHHHTTT-TSCSSEEEECSSSSSHHHHHHH
T ss_pred CCCcccCCCC-CcHHHHHHH-HHHHHhCcC-CCCCeEEEECCCCCcHHHHHHH
Confidence 5788876632 234445544 334444321 1234578899999999998743
No 50
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.83 E-value=0.49 Score=48.60 Aligned_cols=51 Identities=31% Similarity=0.480 Sum_probs=35.1
Q ss_pred eEeecEEecCCCchHHHHHHHHHHHHH-Hhhc--Cc--ceEEEeeCCCCCCcccee
Q 047385 46 KFGFDRVFYEKSEQAEVFEFLALPIIR-DAFN--GM--NGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 46 ~F~FD~Vf~~~~~Q~~vf~~~~~plv~-~~l~--G~--n~ti~ayG~tgSGKT~Tm 96 (483)
.-+||.|-+-+..-+++-+.+..|+.. ..+. |. .-.|+-||++|+|||.+.
T Consensus 144 ~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 144 DSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHH
Confidence 356788877766666777777777652 3343 33 235889999999998763
No 51
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=82.89 E-value=0.32 Score=47.79 Aligned_cols=44 Identities=20% Similarity=0.366 Sum_probs=27.9
Q ss_pred eeEeecEEecCCCchHHHHHHHHHHHHHHhhcCcceEEEeeCCCCCCcccee
Q 047385 45 FKFGFDRVFYEKSEQAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 45 ~~F~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm 96 (483)
..|+||.+++.+ .+... +...++.+....|+-||++|+|||+..
T Consensus 19 ~~~~f~~i~G~~----~~~~~----l~~~~~~~~~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 19 PVFPFSAIVGQE----DMKLA----LLLTAVDPGIGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp CCCCGGGSCSCH----HHHHH----HHHHHHCGGGCCEEEECCGGGCTTHHH
T ss_pred CCCCchhccChH----HHHHH----HHHHhhCCCCceEEEECCCCccHHHHH
Confidence 457888887642 33322 222333334445889999999999875
No 52
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=82.32 E-value=0.36 Score=46.51 Aligned_cols=51 Identities=24% Similarity=0.468 Sum_probs=32.2
Q ss_pred eEeecEEecCCCchHHHHHHHHHHHHH-HhhcC---cceEEEeeCCCCCCcccee
Q 047385 46 KFGFDRVFYEKSEQAEVFEFLALPIIR-DAFNG---MNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 46 ~F~FD~Vf~~~~~Q~~vf~~~~~plv~-~~l~G---~n~ti~ayG~tgSGKT~Tm 96 (483)
..+||.+.+.+..-+.+.+.+..|+.. ..+.| ....|+-||++|+|||+..
T Consensus 17 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 17 KVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 457888877655445555554444431 12222 3457889999999999875
No 53
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=82.15 E-value=0.34 Score=48.60 Aligned_cols=51 Identities=20% Similarity=0.400 Sum_probs=30.7
Q ss_pred eEeecEEecCCCchHHHHHHHHHHHHHHh----hcCcceEEEeeCCCCCCcccee
Q 047385 46 KFGFDRVFYEKSEQAEVFEFLALPIIRDA----FNGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 46 ~F~FD~Vf~~~~~Q~~vf~~~~~plv~~~----l~G~n~ti~ayG~tgSGKT~Tm 96 (483)
..+||.+.+.+..-+.+.+.+..|+...- +.+....|+-||++|+|||+..
T Consensus 80 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 80 PVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHH
Confidence 35677776654444444444444432211 2234557889999999999875
No 54
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=81.32 E-value=0.44 Score=47.06 Aligned_cols=50 Identities=22% Similarity=0.365 Sum_probs=32.2
Q ss_pred EeecEEecCCCchHHHHHHHHHHHHH-HhhcCc---ceEEEeeCCCCCCcccee
Q 047385 47 FGFDRVFYEKSEQAEVFEFLALPIIR-DAFNGM---NGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 47 F~FD~Vf~~~~~Q~~vf~~~~~plv~-~~l~G~---n~ti~ayG~tgSGKT~Tm 96 (483)
.+||.|.+.+..-+.+.+.+..|+-. .++.|. ...|+-||++|+|||+..
T Consensus 9 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 9 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHH
Confidence 46777877655545555555555432 334442 246888999999999875
No 55
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=81.22 E-value=0.3 Score=47.17 Aligned_cols=51 Identities=20% Similarity=0.311 Sum_probs=28.0
Q ss_pred eEeecEEecCCCchHHHHHHHHHHHHH-HhhcCcc----eEEEeeCCCCCCcccee
Q 047385 46 KFGFDRVFYEKSEQAEVFEFLALPIIR-DAFNGMN----GTVITYGQTGAGKTFSM 96 (483)
Q Consensus 46 ~F~FD~Vf~~~~~Q~~vf~~~~~plv~-~~l~G~n----~ti~ayG~tgSGKT~Tm 96 (483)
..+||.|-+.+.--+++.+.+..|+-. .++++++ ..++-||++|+|||+.+
T Consensus 6 ~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 6 NVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp ------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHH
Confidence 456777776655555566555555432 2333222 22888999999999875
No 56
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=81.17 E-value=0.52 Score=45.13 Aligned_cols=52 Identities=25% Similarity=0.275 Sum_probs=28.6
Q ss_pred eeEeecEEecCCCchHHHHHHHHHHHH-HHhhcCc----ceEEEeeCCCCCCccceec
Q 047385 45 FKFGFDRVFYEKSEQAEVFEFLALPII-RDAFNGM----NGTVITYGQTGAGKTFSME 97 (483)
Q Consensus 45 ~~F~FD~Vf~~~~~Q~~vf~~~~~plv-~~~l~G~----n~ti~ayG~tgSGKT~Tm~ 97 (483)
..++||.+.+.+....++-+ +...+- ..++.+. ...|+-||++|+|||+.+-
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~-l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~ 91 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKE-IVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLAR 91 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHH-HHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHH-HHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHH
Confidence 45778888776543333322 221110 1122221 2238899999999998863
No 57
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=81.11 E-value=0.66 Score=42.43 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=18.0
Q ss_pred HHHhhcCcceEEEeeCCCCCCccce
Q 047385 71 IRDAFNGMNGTVITYGQTGAGKTFS 95 (483)
Q Consensus 71 v~~~l~G~n~ti~ayG~tgSGKT~T 95 (483)
+..+++|.| ++..++||||||.+
T Consensus 45 i~~~~~~~~--~lv~~pTGsGKT~~ 67 (224)
T 1qde_A 45 IMPIIEGHD--VLAQAQSGTGKTGT 67 (224)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHH
T ss_pred HHHHhcCCC--EEEECCCCCcHHHH
Confidence 345567876 57789999999987
No 58
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=80.77 E-value=0.82 Score=41.78 Aligned_cols=46 Identities=13% Similarity=0.188 Sum_probs=27.0
Q ss_pred EeecEEecCCCchHHHHHHHHHHHHHHhhcCcceEEEeeCCCCCCccceec
Q 047385 47 FGFDRVFYEKSEQAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSME 97 (483)
Q Consensus 47 F~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm~ 97 (483)
++||.++.. ..+..++..+ ..++. .+....++-||++|+|||+.+.
T Consensus 25 ~~~~~~~~~-~~~~~~~~~l-~~~~~---~~~~~~~ll~G~~G~GKT~la~ 70 (242)
T 3bos_A 25 ETFTSYYPA-AGNDELIGAL-KSAAS---GDGVQAIYLWGPVKSGRTHLIH 70 (242)
T ss_dssp CSTTTSCC---CCHHHHHHH-HHHHH---TCSCSEEEEECSTTSSHHHHHH
T ss_pred CChhhccCC-CCCHHHHHHH-HHHHh---CCCCCeEEEECCCCCCHHHHHH
Confidence 466665552 2334455432 22222 3345678889999999999863
No 59
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=80.76 E-value=0.69 Score=47.67 Aligned_cols=29 Identities=24% Similarity=0.433 Sum_probs=22.1
Q ss_pred HHHHHhhcCcceEEEeeCCCCCCccceec
Q 047385 69 PIIRDAFNGMNGTVITYGQTGAGKTFSME 97 (483)
Q Consensus 69 plv~~~l~G~n~ti~ayG~tgSGKT~Tm~ 97 (483)
+++..++..-...|...|+||||||++|.
T Consensus 157 ~~L~~l~~~~ggii~I~GpnGSGKTTlL~ 185 (418)
T 1p9r_A 157 DNFRRLIKRPHGIILVTGPTGSGKSTTLY 185 (418)
T ss_dssp HHHHHHHTSSSEEEEEECSTTSCHHHHHH
T ss_pred HHHHHHHHhcCCeEEEECCCCCCHHHHHH
Confidence 34555555556678889999999999974
No 60
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=80.76 E-value=0.76 Score=41.10 Aligned_cols=20 Identities=25% Similarity=0.285 Sum_probs=15.8
Q ss_pred CcceEEEeeCCCCCCcccee
Q 047385 77 GMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 77 G~n~ti~ayG~tgSGKT~Tm 96 (483)
+....++-||++|+|||+.+
T Consensus 36 ~~~~~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 36 KNIPHLLFSGPPGTGKTATA 55 (226)
T ss_dssp TCCCCEEEECSTTSSHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHH
Confidence 33334899999999999876
No 61
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=80.67 E-value=0.75 Score=41.41 Aligned_cols=23 Identities=22% Similarity=0.423 Sum_probs=17.0
Q ss_pred HHhhcCcceEEEeeCCCCCCcccee
Q 047385 72 RDAFNGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 72 ~~~l~G~n~ti~ayG~tgSGKT~Tm 96 (483)
..+++|.| ++..++||||||.+.
T Consensus 35 ~~~~~~~~--~lv~apTGsGKT~~~ 57 (206)
T 1vec_A 35 PIALSGRD--ILARAKNGTGKSGAY 57 (206)
T ss_dssp HHHHTTCC--EEEECCSSSTTHHHH
T ss_pred HHHccCCC--EEEECCCCCchHHHH
Confidence 44457766 567889999999754
No 62
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=80.58 E-value=0.94 Score=43.04 Aligned_cols=21 Identities=24% Similarity=0.123 Sum_probs=17.9
Q ss_pred cCcceEEEeeCCCCCCcccee
Q 047385 76 NGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 76 ~G~n~ti~ayG~tgSGKT~Tm 96 (483)
......|+-||++|+|||+..
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALA 81 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHH
Confidence 556678999999999999875
No 63
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=80.42 E-value=0.32 Score=45.68 Aligned_cols=19 Identities=26% Similarity=0.443 Sum_probs=15.8
Q ss_pred cceEEEeeCCCCCCcccee
Q 047385 78 MNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 78 ~n~ti~ayG~tgSGKT~Tm 96 (483)
....|+-||++|+|||+..
T Consensus 38 ~~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCCEEEEESCTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3456889999999999875
No 64
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=79.99 E-value=0.76 Score=41.31 Aligned_cols=22 Identities=36% Similarity=0.575 Sum_probs=16.9
Q ss_pred HHhhcCcceEEEeeCCCCCCccce
Q 047385 72 RDAFNGMNGTVITYGQTGAGKTFS 95 (483)
Q Consensus 72 ~~~l~G~n~ti~ayG~tgSGKT~T 95 (483)
..+++|.+ ++..++||||||.+
T Consensus 33 ~~~~~~~~--~li~~~TGsGKT~~ 54 (207)
T 2gxq_A 33 PLALEGKD--LIGQARTGTGKTLA 54 (207)
T ss_dssp HHHHTTCC--EEEECCTTSCHHHH
T ss_pred HHHcCCCC--EEEECCCCChHHHH
Confidence 44557766 56688999999987
No 65
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=79.82 E-value=0.43 Score=47.26 Aligned_cols=38 Identities=26% Similarity=0.393 Sum_probs=23.9
Q ss_pred chHHHHHHHHHHHHHHhh-cCcceEEEeeCCCCCCcccee
Q 047385 58 EQAEVFEFLALPIIRDAF-NGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 58 ~Q~~vf~~~~~plv~~~l-~G~n~ti~ayG~tgSGKT~Tm 96 (483)
.+++..+.+. ..+..++ .+....++-||++|+|||+++
T Consensus 23 gr~~~~~~l~-~~l~~~~~~~~~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 23 HREAELRRLA-EVLAPALRGEKPSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp TCHHHHHHHH-HTTGGGTSSCCCCCEEECBCTTSSHHHHH
T ss_pred CHHHHHHHHH-HHHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 3444554433 2333333 344557889999999999886
No 66
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=79.29 E-value=12 Score=29.36 Aligned_cols=28 Identities=32% Similarity=0.332 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047385 410 TITSLQHMVEDLVRAVEELKSENKALKT 437 (483)
Q Consensus 410 ~~~~~~~~~~~l~~~~~~~~~e~~~l~~ 437 (483)
.|.-++..+++|+.+...+..+++.++.
T Consensus 21 tI~lLqmEieELKekN~~L~~e~~e~~~ 48 (81)
T 2jee_A 21 TITLLQMEIEELKEKNNSLSQEVQNAQH 48 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555556666655555555555333
No 67
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=78.79 E-value=0.76 Score=46.29 Aligned_cols=28 Identities=25% Similarity=0.479 Sum_probs=20.5
Q ss_pred HHHHhhcCcceEEEeeCCCCCCccceec
Q 047385 70 IIRDAFNGMNGTVITYGQTGAGKTFSME 97 (483)
Q Consensus 70 lv~~~l~G~n~ti~ayG~tgSGKT~Tm~ 97 (483)
.+.+++.--...|...|+||||||++|.
T Consensus 114 ~l~~l~~~~~g~i~I~GptGSGKTTlL~ 141 (356)
T 3jvv_A 114 VFKRVSDVPRGLVLVTGPTGSGKSTTLA 141 (356)
T ss_dssp HHHHHHHCSSEEEEEECSTTSCHHHHHH
T ss_pred HHHHHHhCCCCEEEEECCCCCCHHHHHH
Confidence 3444454445578889999999999984
No 68
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=78.49 E-value=0.79 Score=47.37 Aligned_cols=49 Identities=20% Similarity=0.401 Sum_probs=28.8
Q ss_pred eeEeecEEecCCCchHHHHHHHHHHHHHHhhcCcceEEEeeCCCCCCccceec
Q 047385 45 FKFGFDRVFYEKSEQAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSME 97 (483)
Q Consensus 45 ~~F~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm~ 97 (483)
..|+||...... ++...+.. +..+... .|..-.++-||++|+|||+.+.
T Consensus 100 ~~~tfd~fv~g~-~n~~a~~~-~~~~a~~--~~~~~~lll~Gp~G~GKTtLa~ 148 (440)
T 2z4s_A 100 PDYTFENFVVGP-GNSFAYHA-ALEVAKH--PGRYNPLFIYGGVGLGKTHLLQ 148 (440)
T ss_dssp TTCSGGGCCCCT-TTHHHHHH-HHHHHHS--TTSSCCEEEECSSSSSHHHHHH
T ss_pred CCCChhhcCCCC-chHHHHHH-HHHHHhC--CCCCCeEEEECCCCCCHHHHHH
Confidence 467888755322 33334433 3333332 2313357889999999999874
No 69
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=78.44 E-value=0.69 Score=40.29 Aligned_cols=18 Identities=28% Similarity=0.660 Sum_probs=14.8
Q ss_pred EEEeeCCCCCCccceecC
Q 047385 81 TVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm~G 98 (483)
.++-+|++|+|||+.+..
T Consensus 38 ~~~l~G~~G~GKTtL~~~ 55 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQA 55 (149)
T ss_dssp EEEEESSSTTTTCHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 466699999999998743
No 70
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=78.07 E-value=0.93 Score=42.17 Aligned_cols=24 Identities=29% Similarity=0.547 Sum_probs=18.5
Q ss_pred HHHhhcCcceEEEeeCCCCCCcccee
Q 047385 71 IRDAFNGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 71 v~~~l~G~n~ti~ayG~tgSGKT~Tm 96 (483)
+..+++|.+ ++..++||||||.+.
T Consensus 60 i~~~~~~~~--~l~~a~TGsGKT~~~ 83 (245)
T 3dkp_A 60 IPVMLHGRE--LLASAPTGSGKTLAF 83 (245)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHhCCCC--EEEECCCCCcHHHHH
Confidence 445667877 577899999999873
No 71
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=77.80 E-value=0.63 Score=43.37 Aligned_cols=25 Identities=36% Similarity=0.565 Sum_probs=18.9
Q ss_pred HHHHhhcCcceEEEeeCCCCCCcccee
Q 047385 70 IIRDAFNGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 70 lv~~~l~G~n~ti~ayG~tgSGKT~Tm 96 (483)
.+..+++|.| ++..++||||||.+.
T Consensus 60 ai~~i~~~~~--~li~apTGsGKT~~~ 84 (237)
T 3bor_A 60 AIIPCIKGYD--VIAQAQSGTGKTATF 84 (237)
T ss_dssp HHHHHHTTCC--EEECCCSSHHHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCcHHHHH
Confidence 3445567877 577999999999873
No 72
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=77.17 E-value=1.2 Score=44.13 Aligned_cols=47 Identities=19% Similarity=0.118 Sum_probs=30.1
Q ss_pred eEeecEEecCCCchHHHHHHHHHHHHHHhhcCcce--EEEeeCCCCCCccceec
Q 047385 46 KFGFDRVFYEKSEQAEVFEFLALPIIRDAFNGMNG--TVITYGQTGAGKTFSME 97 (483)
Q Consensus 46 ~F~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~--ti~ayG~tgSGKT~Tm~ 97 (483)
.+.||.+.+. +.+... +..+++.+-.|... .++-||++|+|||+...
T Consensus 40 ~~~~~~ivG~----~~~~~~-l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~ 88 (368)
T 3uk6_A 40 RQASQGMVGQ----LAARRA-AGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAM 88 (368)
T ss_dssp CSEETTEESC----HHHHHH-HHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHH
T ss_pred CcchhhccCh----HHHHHH-HHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHH
Confidence 4567777764 333332 22344555556553 78889999999998763
No 73
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=76.96 E-value=0.62 Score=45.75 Aligned_cols=51 Identities=22% Similarity=0.421 Sum_probs=31.5
Q ss_pred eEeecEEecCCCchHHHHHHHHHHHHH-HhhcCc---ceEEEeeCCCCCCcccee
Q 047385 46 KFGFDRVFYEKSEQAEVFEFLALPIIR-DAFNGM---NGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 46 ~F~FD~Vf~~~~~Q~~vf~~~~~plv~-~~l~G~---n~ti~ayG~tgSGKT~Tm 96 (483)
..+||.|.+.+..-+.+.+.+..|+.. ..+.+. ...|+-||++|+|||+..
T Consensus 14 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 14 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred CCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 356788877555445555555444432 222222 235889999999999875
No 74
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=76.43 E-value=0.39 Score=45.30 Aligned_cols=50 Identities=26% Similarity=0.291 Sum_probs=28.3
Q ss_pred eEeecEEecCCCchHHHHHHHHHHHHH-Hhhc----CcceEEEeeCCCCCCcccee
Q 047385 46 KFGFDRVFYEKSEQAEVFEFLALPIIR-DAFN----GMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 46 ~F~FD~Vf~~~~~Q~~vf~~~~~plv~-~~l~----G~n~ti~ayG~tgSGKT~Tm 96 (483)
.++||.+.+.+..-+.+.+. +..+.. ..+. .....|+-||++|+|||+.+
T Consensus 8 ~~~~~~i~G~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 8 KTTFADVAGCDEAKEEVAEL-VEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCCGGGSCSCHHHHHHTHHH-HHHHHCGGGC-----CCCCEEEEECCTTSCHHHHH
T ss_pred CCCHHHhcCcHHHHHHHHHH-HHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHH
Confidence 46788887765443333322 222111 1111 12345889999999999875
No 75
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=75.79 E-value=1.2 Score=41.19 Aligned_cols=24 Identities=38% Similarity=0.606 Sum_probs=17.8
Q ss_pred HHHhhcCcceEEEeeCCCCCCcccee
Q 047385 71 IRDAFNGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 71 v~~~l~G~n~ti~ayG~tgSGKT~Tm 96 (483)
+..+++|.+ ++..++||||||.+.
T Consensus 56 i~~~~~~~~--~li~a~TGsGKT~~~ 79 (236)
T 2pl3_A 56 IGLALQGKD--VLGAAKTGSGKTLAF 79 (236)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHhCCCC--EEEEeCCCCcHHHHH
Confidence 344567877 466789999999863
No 76
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=75.37 E-value=1.5 Score=43.39 Aligned_cols=37 Identities=16% Similarity=0.330 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHHHHhhcCcc-e--EEEeeCCCCCCcccee
Q 047385 59 QAEVFEFLALPIIRDAFNGMN-G--TVITYGQTGAGKTFSM 96 (483)
Q Consensus 59 Q~~vf~~~~~plv~~~l~G~n-~--ti~ayG~tgSGKT~Tm 96 (483)
+++..+.+. ..+...+.|.. . .++-||++|+|||+++
T Consensus 22 r~~~~~~l~-~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 22 REQQLQQLD-ILLGNWLRNPGHHYPRATLLGRPGTGKTVTL 61 (389)
T ss_dssp CHHHHHHHH-HHHHHHHHSTTSSCCEEEEECCTTSSHHHHH
T ss_pred hHHHHHHHH-HHHHHHHcCCCCCCCeEEEECCCCCCHHHHH
Confidence 444444433 34445544433 3 6888999999999886
No 77
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=75.35 E-value=1.2 Score=42.84 Aligned_cols=19 Identities=26% Similarity=0.214 Sum_probs=15.8
Q ss_pred cceEEEeeCCCCCCcccee
Q 047385 78 MNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 78 ~n~ti~ayG~tgSGKT~Tm 96 (483)
....|+-||++|+|||++.
T Consensus 66 ~~~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CCCEEEEEECTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3446889999999999875
No 78
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=75.29 E-value=1.1 Score=42.83 Aligned_cols=20 Identities=30% Similarity=0.591 Sum_probs=15.9
Q ss_pred cceEEEeeCCCCCCccceec
Q 047385 78 MNGTVITYGQTGAGKTFSME 97 (483)
Q Consensus 78 ~n~ti~ayG~tgSGKT~Tm~ 97 (483)
-...+.-.|++|||||+++.
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~ 43 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIA 43 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHH
Confidence 34466778999999999873
No 79
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=75.19 E-value=4.7 Score=28.98 Aligned_cols=32 Identities=28% Similarity=0.401 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047385 410 TITSLQHMVEDLVRAVEELKSENKALKTRIAA 441 (483)
Q Consensus 410 ~~~~~~~~~~~l~~~~~~~~~e~~~l~~~~~~ 441 (483)
.+..|+++..+|+.++++++.+++.|+.++.+
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34567778888999999999999988888764
No 80
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=75.01 E-value=0.99 Score=42.03 Aligned_cols=26 Identities=35% Similarity=0.427 Sum_probs=18.2
Q ss_pred HHHHHhhcCcceEEEeeCCCCCCcccee
Q 047385 69 PIIRDAFNGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 69 plv~~~l~G~n~ti~ayG~tgSGKT~Tm 96 (483)
.++..+..|.+ ++..|+||||||..+
T Consensus 68 ~~i~~i~~g~~--~~i~g~TGsGKTt~~ 93 (235)
T 3llm_A 68 EILEAISQNSV--VIIRGATGCGKTTQV 93 (235)
T ss_dssp HHHHHHHHCSE--EEEECCTTSSHHHHH
T ss_pred HHHHHHhcCCE--EEEEeCCCCCcHHhH
Confidence 34455556654 567899999999754
No 81
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=74.59 E-value=1.3 Score=40.27 Aligned_cols=24 Identities=38% Similarity=0.577 Sum_probs=17.8
Q ss_pred HHHhhcCcceEEEeeCCCCCCcccee
Q 047385 71 IRDAFNGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 71 v~~~l~G~n~ti~ayG~tgSGKT~Tm 96 (483)
+..+++|.+ ++..++||||||.+.
T Consensus 45 i~~~~~~~~--~li~~~TGsGKT~~~ 68 (220)
T 1t6n_A 45 IPQAILGMD--VLCQAKSGMGKTAVF 68 (220)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHhCCCC--EEEECCCCCchhhhh
Confidence 345557777 566789999999864
No 82
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=74.27 E-value=1.6 Score=45.14 Aligned_cols=46 Identities=22% Similarity=0.068 Sum_probs=30.0
Q ss_pred eEeecEEecCCCchHHHHHHHHHHHHHHhhcCcc--eEEEeeCCCCCCcccee
Q 047385 46 KFGFDRVFYEKSEQAEVFEFLALPIIRDAFNGMN--GTVITYGQTGAGKTFSM 96 (483)
Q Consensus 46 ~F~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n--~ti~ayG~tgSGKT~Tm 96 (483)
.+.||.+.+ |+++.+.+ ..+++.+..|.. ..++-||++|+|||+..
T Consensus 33 ~~~~~~iiG----~~~~~~~l-~~~~~~~~~~~~~~~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 33 KQAASGLVG----QENAREAC-GVIVELIKSKKMAGRAVLLAGPPGTGKTALA 80 (456)
T ss_dssp CSEETTEES----CHHHHHHH-HHHHHHHHTTCCTTCEEEEECCTTSSHHHHH
T ss_pred hhchhhccC----HHHHHHHH-HHHHHHHHhCCCCCCeEEEECCCcCCHHHHH
Confidence 466777775 44454442 345555555643 35778999999999875
No 83
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=74.24 E-value=0.96 Score=42.96 Aligned_cols=25 Identities=32% Similarity=0.630 Sum_probs=18.6
Q ss_pred HHHHhhcCcceEEEeeCCCCCCcccee
Q 047385 70 IIRDAFNGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 70 lv~~~l~G~n~ti~ayG~tgSGKT~Tm 96 (483)
++..++.|.| ++..++||||||.+.
T Consensus 84 ~i~~~~~~~~--~lv~a~TGsGKT~~~ 108 (262)
T 3ly5_A 84 SIRPLLEGRD--LLAAAKTGSGKTLAF 108 (262)
T ss_dssp HHHHHHHTCC--CEECCCTTSCHHHHH
T ss_pred HHHHHhCCCc--EEEEccCCCCchHHH
Confidence 3445567776 577899999999863
No 84
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=74.13 E-value=0.72 Score=41.59 Aligned_cols=35 Identities=34% Similarity=0.324 Sum_probs=23.2
Q ss_pred ecCCCchHHHHHHHHHHHHHHhhcCcceEEEeeCCCCCCccceec
Q 047385 53 FYEKSEQAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSME 97 (483)
Q Consensus 53 f~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm~ 97 (483)
|.+..-|.+.+.. +++|.+ ++..++||||||.+..
T Consensus 32 ~~l~~~Q~~~i~~--------~~~~~~--~li~~~tGsGKT~~~~ 66 (216)
T 3b6e_A 32 LQLRPYQMEVAQP--------ALEGKN--IIICLPTGSGKTRVAV 66 (216)
T ss_dssp CCCCHHHHHHHHH--------HHTTCC--EEEECSCHHHHHHHHH
T ss_pred CCchHHHHHHHHH--------HhcCCC--EEEEcCCCCCHHHHHH
Confidence 3444556655543 345665 4668999999999864
No 85
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=74.11 E-value=1.4 Score=40.53 Aligned_cols=24 Identities=38% Similarity=0.479 Sum_probs=18.1
Q ss_pred HHHhhcCcceEEEeeCCCCCCcccee
Q 047385 71 IRDAFNGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 71 v~~~l~G~n~ti~ayG~tgSGKT~Tm 96 (483)
+..+++|.|. +..++||||||.+.
T Consensus 51 i~~~~~~~~~--l~~apTGsGKT~~~ 74 (228)
T 3iuy_A 51 WPIILQGIDL--IVVAQTGTGKTLSY 74 (228)
T ss_dssp HHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHhCCCCE--EEECCCCChHHHHH
Confidence 3455678775 66789999999864
No 86
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=73.39 E-value=0.88 Score=45.94 Aligned_cols=51 Identities=25% Similarity=0.481 Sum_probs=30.2
Q ss_pred eEeecEEecCCCchHHHHHHHHHHHHH-HhhcC---cceEEEeeCCCCCCcccee
Q 047385 46 KFGFDRVFYEKSEQAEVFEFLALPIIR-DAFNG---MNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 46 ~F~FD~Vf~~~~~Q~~vf~~~~~plv~-~~l~G---~n~ti~ayG~tgSGKT~Tm 96 (483)
.++||.+.+.+..-+.+.+.+..|+.. .++.+ -...|+-||++|+|||+..
T Consensus 111 ~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 111 AVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHH
T ss_pred CCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHH
Confidence 456777777544444444444444331 11122 2357889999999999875
No 87
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=73.38 E-value=1.5 Score=41.04 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=17.1
Q ss_pred HHhhcCcceEEEeeCCCCCCcccee
Q 047385 72 RDAFNGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 72 ~~~l~G~n~ti~ayG~tgSGKT~Tm 96 (483)
..+++|.| ++..++||||||.+.
T Consensus 55 ~~i~~~~~--~l~~a~TGsGKT~~~ 77 (253)
T 1wrb_A 55 PAILEHRD--IMACAQTGSGKTAAF 77 (253)
T ss_dssp HHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHhCCCC--EEEECCCCChHHHHH
Confidence 44557877 466789999999764
No 88
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=73.08 E-value=1.1 Score=44.95 Aligned_cols=51 Identities=22% Similarity=0.421 Sum_probs=31.7
Q ss_pred eEeecEEecCCCchHHHHHHHHHHHHH-HhhcCc---ceEEEeeCCCCCCcccee
Q 047385 46 KFGFDRVFYEKSEQAEVFEFLALPIIR-DAFNGM---NGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 46 ~F~FD~Vf~~~~~Q~~vf~~~~~plv~-~~l~G~---n~ti~ayG~tgSGKT~Tm 96 (483)
..+||.|.+.+..-+.+.+.+..|+-. .++.+. ...|+-||++|+|||+..
T Consensus 47 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 47 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHH
Confidence 457888877655545555555444321 233322 235788999999999875
No 89
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=72.16 E-value=1.6 Score=42.54 Aligned_cols=27 Identities=22% Similarity=0.282 Sum_probs=19.8
Q ss_pred HHHHhhcCcceEEEeeCCCCCCcccee
Q 047385 70 IIRDAFNGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 70 lv~~~l~G~n~ti~ayG~tgSGKT~Tm 96 (483)
.+..++.|..--+++.++||||||.+.
T Consensus 122 ai~~il~~~~~~~l~~a~TGsGKT~a~ 148 (300)
T 3fmo_B 122 ALPLMLAEPPQNLIAQSQSGTGKTAAF 148 (300)
T ss_dssp HHHHHTSSSCCCEEEECCTTSSHHHHH
T ss_pred HHHHHHcCCCCeEEEECCCCCCccHHH
Confidence 345667774445688999999999874
No 90
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=71.89 E-value=2.1 Score=41.30 Aligned_cols=29 Identities=21% Similarity=0.227 Sum_probs=22.7
Q ss_pred HHHHHhhcCc---ceEEEeeCCCCCCccceec
Q 047385 69 PIIRDAFNGM---NGTVITYGQTGAGKTFSME 97 (483)
Q Consensus 69 plv~~~l~G~---n~ti~ayG~tgSGKT~Tm~ 97 (483)
..+..+++|. --||+-||+.|+|||+...
T Consensus 91 ~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 91 SVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp HHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 4467777776 3379999999999998754
No 91
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=71.77 E-value=3.4 Score=39.95 Aligned_cols=31 Identities=23% Similarity=0.224 Sum_probs=20.3
Q ss_pred HHHHHHHHhhcCc-----ceEEEeeCCCCCCcccee
Q 047385 66 LALPIIRDAFNGM-----NGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 66 ~~~plv~~~l~G~-----n~ti~ayG~tgSGKT~Tm 96 (483)
+...++..++.|+ ...|+..|++|||||+..
T Consensus 15 ~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla 50 (287)
T 1gvn_B 15 RLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLR 50 (287)
T ss_dssp HHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHH
T ss_pred HHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHH
Confidence 3444455555432 346788999999998763
No 92
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=71.56 E-value=1.7 Score=40.00 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=16.8
Q ss_pred HHhhcCcceEEEeeCCCCCCccce
Q 047385 72 RDAFNGMNGTVITYGQTGAGKTFS 95 (483)
Q Consensus 72 ~~~l~G~n~ti~ayG~tgSGKT~T 95 (483)
..+++|.| ++..++||||||.+
T Consensus 56 ~~~~~~~~--~l~~a~TGsGKT~~ 77 (230)
T 2oxc_A 56 PLGRCGLD--LIVQAKSGTGKTCV 77 (230)
T ss_dssp HHHHTTCC--EEEECCTTSSHHHH
T ss_pred HHHhCCCC--EEEECCCCCcHHHH
Confidence 34567877 45678999999987
No 93
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=71.54 E-value=1 Score=47.09 Aligned_cols=50 Identities=26% Similarity=0.507 Sum_probs=32.8
Q ss_pred EeecEEecCCCchHHHHHHHHHHHHH-Hhhc--Cc--ceEEEeeCCCCCCcccee
Q 047385 47 FGFDRVFYEKSEQAEVFEFLALPIIR-DAFN--GM--NGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 47 F~FD~Vf~~~~~Q~~vf~~~~~plv~-~~l~--G~--n~ti~ayG~tgSGKT~Tm 96 (483)
-+||.|-+-+.--+++.+.+..|+.. ..+. |. --.|+-||++|+|||++.
T Consensus 206 vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 206 VTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp CCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHH
T ss_pred CCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHH
Confidence 56777777655555666666566542 3333 32 346899999999998653
No 94
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=71.41 E-value=0.94 Score=46.83 Aligned_cols=51 Identities=22% Similarity=0.356 Sum_probs=29.4
Q ss_pred eEeecEEecCCCchHHHHHHHHHHHHH-HhhcC---cceEEEeeCCCCCCcccee
Q 047385 46 KFGFDRVFYEKSEQAEVFEFLALPIIR-DAFNG---MNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 46 ~F~FD~Vf~~~~~Q~~vf~~~~~plv~-~~l~G---~n~ti~ayG~tgSGKT~Tm 96 (483)
..+||.|.+.+..-+.+.+.+..|+-. .++.| ....|+-||++|+|||+..
T Consensus 130 ~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 130 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHH
Confidence 456777766543333343333333321 23333 2246888999999999875
No 95
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=71.20 E-value=1.8 Score=43.04 Aligned_cols=26 Identities=35% Similarity=0.534 Sum_probs=20.1
Q ss_pred HHHHHhhcCcceEEEeeCCCCCCcccee
Q 047385 69 PIIRDAFNGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 69 plv~~~l~G~n~ti~ayG~tgSGKT~Tm 96 (483)
..+..++.|.+ ++..++||||||.+.
T Consensus 69 ~~i~~~~~~~~--~lv~a~TGsGKT~~~ 94 (414)
T 3eiq_A 69 RAILPCIKGYD--VIAQAQSGTGKTATF 94 (414)
T ss_dssp HHHHHHHTTCC--EEECCCSCSSSHHHH
T ss_pred HHhHHHhCCCC--EEEECCCCCcccHHH
Confidence 34566678888 577999999999873
No 96
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=71.00 E-value=1.8 Score=40.71 Aligned_cols=24 Identities=38% Similarity=0.549 Sum_probs=17.7
Q ss_pred HHHhhcCcceEEEeeCCCCCCcccee
Q 047385 71 IRDAFNGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 71 v~~~l~G~n~ti~ayG~tgSGKT~Tm 96 (483)
+..+++|.+ ++..++||||||.+.
T Consensus 74 i~~i~~~~~--~lv~a~TGsGKT~~~ 97 (249)
T 3ber_A 74 IPLALQGRD--IIGLAETGSGKTGAF 97 (249)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHhCCCC--EEEEcCCCCCchhHh
Confidence 445567876 456789999999874
No 97
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=70.94 E-value=1.5 Score=40.84 Aligned_cols=23 Identities=39% Similarity=0.583 Sum_probs=17.0
Q ss_pred HHhhcCcceEEEeeCCCCCCcccee
Q 047385 72 RDAFNGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 72 ~~~l~G~n~ti~ayG~tgSGKT~Tm 96 (483)
..+++|.|. +..++||||||.+.
T Consensus 61 ~~~~~g~~~--l~~apTGsGKT~~~ 83 (242)
T 3fe2_A 61 PVALSGLDM--VGVAQTGSGKTLSY 83 (242)
T ss_dssp HHHHHTCCE--EEEECTTSCHHHHH
T ss_pred HHHhCCCCE--EEECCCcCHHHHHH
Confidence 445578765 55679999999874
No 98
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=70.81 E-value=1.2 Score=41.45 Aligned_cols=28 Identities=14% Similarity=0.361 Sum_probs=19.7
Q ss_pred HHHhhcCcc--eEEEeeCCCCCCccceecC
Q 047385 71 IRDAFNGMN--GTVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 71 v~~~l~G~n--~ti~ayG~tgSGKT~Tm~G 98 (483)
+..++.|.- -+++-||+.|+|||+....
T Consensus 48 l~~~~~~iPkkn~ili~GPPGtGKTt~a~a 77 (212)
T 1tue_A 48 LKSFLKGTPKKNCLVFCGPANTGKSYFGMS 77 (212)
T ss_dssp HHHHHHTCTTCSEEEEESCGGGCHHHHHHH
T ss_pred HHHHHhcCCcccEEEEECCCCCCHHHHHHH
Confidence 344445532 3688999999999988644
No 99
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=70.28 E-value=1.7 Score=45.73 Aligned_cols=51 Identities=24% Similarity=0.391 Sum_probs=30.4
Q ss_pred eEeecEEecCCCchHHHHHHHHHHHH-----HHhhcCcceEEEeeCCCCCCcccee
Q 047385 46 KFGFDRVFYEKSEQAEVFEFLALPII-----RDAFNGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 46 ~F~FD~Vf~~~~~Q~~vf~~~~~plv-----~~~l~G~n~ti~ayG~tgSGKT~Tm 96 (483)
...|+.+.+.+..-+.+.+.+..|+- ..+-......|+-||++|+|||+..
T Consensus 200 ~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHH
T ss_pred CCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHH
Confidence 34666666654444555555444322 1111234456899999999999875
No 100
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=69.85 E-value=6.9 Score=29.80 Aligned_cols=39 Identities=15% Similarity=0.175 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 047385 407 TLQTITSLQHMVEDLVRAVEELKSENKALKTRIAAAGKI 445 (483)
Q Consensus 407 ~~~~~~~~~~~~~~l~~~~~~~~~e~~~l~~~~~~~~~~ 445 (483)
....+.+|+..+.++......+..||..|+.++..++.+
T Consensus 27 K~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~E 65 (70)
T 1gd2_E 27 KEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEE 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666667777777777777777777777766544
No 101
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=69.57 E-value=2.5 Score=41.80 Aligned_cols=46 Identities=24% Similarity=0.296 Sum_probs=27.6
Q ss_pred eEeecEEecCCCchHHHHHHHHHHHHHHhhcC-cceEEEeeCCCCCCcccee
Q 047385 46 KFGFDRVFYEKSEQAEVFEFLALPIIRDAFNG-MNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 46 ~F~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G-~n~ti~ayG~tgSGKT~Tm 96 (483)
.|.++.+++ +++..+.+. ..+..++.| ....|+-||++|+|||+++
T Consensus 16 ~~~p~~l~g----r~~~~~~l~-~~l~~~~~~~~~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 16 LSVFKEIPF----REDILRDAA-IAIRYFVKNEVKFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp HHHCSSCTT----CHHHHHHHH-HHHHHHHTTCCCCEEEEEECTTSSHHHHH
T ss_pred ccCCCCCCC----hHHHHHHHH-HHHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 344444444 344444433 334444443 3457899999999999875
No 102
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=69.30 E-value=1.3 Score=40.49 Aligned_cols=23 Identities=35% Similarity=0.466 Sum_probs=16.9
Q ss_pred HHhhcCcceEEEeeCCCCCCcccee
Q 047385 72 RDAFNGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 72 ~~~l~G~n~ti~ayG~tgSGKT~Tm 96 (483)
..+++|.++ +..++||||||.+.
T Consensus 36 ~~~~~~~~~--lv~a~TGsGKT~~~ 58 (219)
T 1q0u_A 36 PGALRGESM--VGQSQTGTGKTHAY 58 (219)
T ss_dssp HHHHHTCCE--EEECCSSHHHHHHH
T ss_pred HHHhCCCCE--EEECCCCChHHHHH
Confidence 444567664 56789999999873
No 103
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=69.18 E-value=2.2 Score=38.33 Aligned_cols=17 Identities=29% Similarity=0.333 Sum_probs=14.9
Q ss_pred eEEEeeCCCCCCcccee
Q 047385 80 GTVITYGQTGAGKTFSM 96 (483)
Q Consensus 80 ~ti~ayG~tgSGKT~Tm 96 (483)
..++-||++|+|||+.+
T Consensus 46 ~~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIA 62 (250)
T ss_dssp SEEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46888999999999876
No 104
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=69.13 E-value=2.2 Score=41.92 Aligned_cols=42 Identities=29% Similarity=0.386 Sum_probs=24.9
Q ss_pred eecEEecCCCchHHHHHHHHHHHHHHhhcCcceEEEeeCCCCCCccceec
Q 047385 48 GFDRVFYEKSEQAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSME 97 (483)
Q Consensus 48 ~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm~ 97 (483)
.|+.+++ |+++.+.+ -..+-.|.-..++-||++|+|||+++.
T Consensus 23 ~~~~~~g----~~~~~~~L----~~~i~~g~~~~~ll~Gp~G~GKTtla~ 64 (340)
T 1sxj_C 23 TLDEVYG----QNEVITTV----RKFVDEGKLPHLLFYGPPGTGKTSTIV 64 (340)
T ss_dssp SGGGCCS----CHHHHHHH----HHHHHTTCCCCEEEECSSSSSHHHHHH
T ss_pred cHHHhcC----cHHHHHHH----HHHHhcCCCceEEEECCCCCCHHHHHH
Confidence 3555654 44554432 222234532237779999999999873
No 105
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=68.79 E-value=2.5 Score=36.09 Aligned_cols=20 Identities=15% Similarity=0.107 Sum_probs=15.6
Q ss_pred ceEEEeeCCCCCCccceecC
Q 047385 79 NGTVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 79 n~ti~ayG~tgSGKT~Tm~G 98 (483)
+..|+-||++|+|||+..-.
T Consensus 27 ~~~vll~G~~GtGKt~lA~~ 46 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARY 46 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGG
T ss_pred CCcEEEECCCCccHHHHHHH
Confidence 34577799999999987643
No 106
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=68.40 E-value=2.2 Score=43.92 Aligned_cols=26 Identities=23% Similarity=0.272 Sum_probs=20.5
Q ss_pred HHHHhhcCcceEEEeeCCCCCCccce
Q 047385 70 IIRDAFNGMNGTVITYGQTGAGKTFS 95 (483)
Q Consensus 70 lv~~~l~G~n~ti~ayG~tgSGKT~T 95 (483)
.+..++.|.+..++..|+||||||..
T Consensus 122 ai~~il~~~~~~~l~~a~TGsGKT~~ 147 (479)
T 3fmp_B 122 ALPLMLAEPPQNLIAQSQSGTGKTAA 147 (479)
T ss_dssp HHHHHTSBSCCEEEEECCSSSSHHHH
T ss_pred HHHHHHcCCCCcEEEEcCCCCchhHH
Confidence 44566677666788999999999977
No 107
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=68.22 E-value=1.3 Score=43.58 Aligned_cols=20 Identities=35% Similarity=0.574 Sum_probs=16.3
Q ss_pred CcceEEEeeCCCCCCcccee
Q 047385 77 GMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 77 G~n~ti~ayG~tgSGKT~Tm 96 (483)
+....++-||++|+|||+.+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHH
Confidence 34557888999999999876
No 108
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=68.05 E-value=1.6 Score=44.11 Aligned_cols=28 Identities=21% Similarity=0.419 Sum_probs=19.5
Q ss_pred HHHHhhcCcceEEEeeCCCCCCccceec
Q 047385 70 IIRDAFNGMNGTVITYGQTGAGKTFSME 97 (483)
Q Consensus 70 lv~~~l~G~n~ti~ayG~tgSGKT~Tm~ 97 (483)
.+..+.-.-...+...|+||||||+++.
T Consensus 127 ~l~~l~~~~g~~i~ivG~~GsGKTTll~ 154 (372)
T 2ewv_A 127 KVLELCHRKMGLILVTGPTGSGKSTTIA 154 (372)
T ss_dssp SHHHHTTSSSEEEEEECSSSSSHHHHHH
T ss_pred HHHHHhhcCCCEEEEECCCCCCHHHHHH
Confidence 3444433344567789999999999973
No 109
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=67.44 E-value=1.6 Score=37.29 Aligned_cols=20 Identities=25% Similarity=0.416 Sum_probs=15.7
Q ss_pred CcceEEEeeCCCCCCcccee
Q 047385 77 GMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 77 G~n~ti~ayG~tgSGKT~Tm 96 (483)
..+..|+-||++|+|||+..
T Consensus 22 ~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHH
Confidence 34456788999999998764
No 110
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=66.94 E-value=2.1 Score=41.85 Aligned_cols=42 Identities=19% Similarity=0.264 Sum_probs=25.1
Q ss_pred eecEEecCCCchHHHHHHHHHHHHHHhhcCcceEEEeeCCCCCCccceec
Q 047385 48 GFDRVFYEKSEQAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSME 97 (483)
Q Consensus 48 ~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm~ 97 (483)
+|+.+.+.+.. . ..+...+..|....++-||++|+|||+++.
T Consensus 35 ~~~~i~g~~~~----~----~~l~~~l~~~~~~~~ll~G~~G~GKT~la~ 76 (353)
T 1sxj_D 35 NLDEVTAQDHA----V----TVLKKTLKSANLPHMLFYGPPGTGKTSTIL 76 (353)
T ss_dssp STTTCCSCCTT----H----HHHHHHTTCTTCCCEEEECSTTSSHHHHHH
T ss_pred CHHHhhCCHHH----H----HHHHHHHhcCCCCEEEEECCCCCCHHHHHH
Confidence 46666654332 2 223333334533338889999999998863
No 111
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=66.94 E-value=2.4 Score=44.79 Aligned_cols=20 Identities=30% Similarity=0.556 Sum_probs=16.2
Q ss_pred cCcceEEEeeCCCCCCccceec
Q 047385 76 NGMNGTVITYGQTGAGKTFSME 97 (483)
Q Consensus 76 ~G~n~ti~ayG~tgSGKT~Tm~ 97 (483)
.|.+ +...|+||||||++|.
T Consensus 259 ~g~~--i~I~GptGSGKTTlL~ 278 (511)
T 2oap_1 259 HKFS--AIVVGETASGKTTTLN 278 (511)
T ss_dssp TTCC--EEEEESTTSSHHHHHH
T ss_pred CCCE--EEEECCCCCCHHHHHH
Confidence 5766 5668999999999874
No 112
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=66.74 E-value=2.4 Score=40.47 Aligned_cols=18 Identities=33% Similarity=0.457 Sum_probs=15.1
Q ss_pred ceEEEeeCCCCCCcccee
Q 047385 79 NGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 79 n~ti~ayG~tgSGKT~Tm 96 (483)
...++-||++|+|||++.
T Consensus 50 ~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 346788999999999875
No 113
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=66.70 E-value=2.3 Score=42.20 Aligned_cols=26 Identities=23% Similarity=0.303 Sum_probs=19.2
Q ss_pred HHHhhcCcceEEEeeCCCCCCcccee
Q 047385 71 IRDAFNGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 71 v~~~l~G~n~ti~ayG~tgSGKT~Tm 96 (483)
+..++.|.+..++..++||||||.+.
T Consensus 56 i~~~~~~~~~~~lv~apTGsGKT~~~ 81 (412)
T 3fht_A 56 LPLMLAEPPQNLIAQSQSGTGKTAAF 81 (412)
T ss_dssp HHHHHSSSCCCEEEECCTTSCHHHHH
T ss_pred HHHHhcCCCCeEEEECCCCchHHHHH
Confidence 45556674455678899999999873
No 114
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=66.51 E-value=2.3 Score=42.50 Aligned_cols=25 Identities=36% Similarity=0.615 Sum_probs=18.8
Q ss_pred HHHHhhcCcceEEEeeCCCCCCcccee
Q 047385 70 IIRDAFNGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 70 lv~~~l~G~n~ti~ayG~tgSGKT~Tm 96 (483)
.+..+++|.+ ++..++||||||.+.
T Consensus 67 ai~~i~~~~~--~lv~a~TGsGKT~~~ 91 (410)
T 2j0s_A 67 AIKQIIKGRD--VIAQSQSGTGKTATF 91 (410)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCCchHHH
Confidence 3455667877 567889999999764
No 115
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=66.49 E-value=23 Score=27.70 Aligned_cols=30 Identities=27% Similarity=0.344 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047385 413 SLQHMVEDLVRAVEELKSENKALKTRIAAA 442 (483)
Q Consensus 413 ~~~~~~~~l~~~~~~~~~e~~~l~~~~~~~ 442 (483)
.+-+.+.-|+..+++++.+|..|..+.+.+
T Consensus 17 ~avdtI~lLqmEieELKekN~~L~~e~~e~ 46 (81)
T 2jee_A 17 QAIDTITLLQMEIEELKEKNNSLSQEVQNA 46 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444445555555555555554443
No 116
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=66.26 E-value=13 Score=24.28 Aligned_cols=30 Identities=30% Similarity=0.354 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047385 411 ITSLQHMVEDLVRAVEELKSENKALKTRIA 440 (483)
Q Consensus 411 ~~~~~~~~~~l~~~~~~~~~e~~~l~~~~~ 440 (483)
..+|+..+++|-.+..+++.|..+||.-+.
T Consensus 3 MnQLE~KVEeLl~~~~~Le~eV~RLk~ll~ 32 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKNKVARLKKKNA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 345666777777777777777777776554
No 117
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=66.04 E-value=2.8 Score=40.23 Aligned_cols=41 Identities=22% Similarity=0.328 Sum_probs=25.1
Q ss_pred ecEEecCCCchHHHHHHHHHHHHHHhhcCcceEEEeeCCCCCCccceec
Q 047385 49 FDRVFYEKSEQAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSME 97 (483)
Q Consensus 49 FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm~ 97 (483)
|+.+.+ |+++.+.+. .++. .|....++-||++|+|||++..
T Consensus 24 ~~~~~g----~~~~~~~l~-~~l~---~~~~~~~ll~G~~G~GKT~la~ 64 (327)
T 1iqp_A 24 LDDIVG----QEHIVKRLK-HYVK---TGSMPHLLFAGPPGVGKTTAAL 64 (327)
T ss_dssp TTTCCS----CHHHHHHHH-HHHH---HTCCCEEEEESCTTSSHHHHHH
T ss_pred HHHhhC----CHHHHHHHH-HHHH---cCCCCeEEEECcCCCCHHHHHH
Confidence 555443 455554432 2332 3443348889999999998863
No 118
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=65.94 E-value=2.2 Score=40.87 Aligned_cols=17 Identities=41% Similarity=0.589 Sum_probs=14.9
Q ss_pred eEEEeeCCCCCCcccee
Q 047385 80 GTVITYGQTGAGKTFSM 96 (483)
Q Consensus 80 ~ti~ayG~tgSGKT~Tm 96 (483)
..++-+|++|+|||++.
T Consensus 48 ~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELA 64 (311)
T ss_dssp EEEEEESCSSSSHHHHH
T ss_pred eEEEEECCCCcCHHHHH
Confidence 57889999999999875
No 119
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=65.51 E-value=3.3 Score=40.35 Aligned_cols=44 Identities=27% Similarity=0.234 Sum_probs=26.8
Q ss_pred eecEEecCCCchHHHHHHHHHHHHHHhh--cCcceEEEeeCCCCCCcccee
Q 047385 48 GFDRVFYEKSEQAEVFEFLALPIIRDAF--NGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 48 ~FD~Vf~~~~~Q~~vf~~~~~plv~~~l--~G~n~ti~ayG~tgSGKT~Tm 96 (483)
+||.+.+ ++.+.+.+ ..++..+. .+....|+-||++|+|||+..
T Consensus 27 ~~~~iiG----~~~~~~~l-~~~l~~~~~~~~~~~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 27 NFDGYIG----QESIKKNL-NVFIAAAKKRNECLDHILFSGPAGLGKTTLA 72 (338)
T ss_dssp SGGGCCS----CHHHHHHH-HHHHHHHHHTTSCCCCEEEECSTTSSHHHHH
T ss_pred CHHHhCC----hHHHHHHH-HHHHHHHHhcCCCCCeEEEECcCCCCHHHHH
Confidence 4666555 44444442 23444433 234456889999999999875
No 120
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=65.51 E-value=9.1 Score=29.78 Aligned_cols=36 Identities=19% Similarity=0.339 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 047385 408 LQTITSLQHMVEDLVRAVEELKSENKALKTRIAAAG 443 (483)
Q Consensus 408 ~~~~~~~~~~~~~l~~~~~~~~~e~~~l~~~~~~~~ 443 (483)
..-|..|++..+.+...+++++.++..|+.++..++
T Consensus 46 i~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L~ 81 (83)
T 1nkp_B 46 TEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRALG 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445778888889999999999999999999988765
No 121
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=65.49 E-value=2.5 Score=38.77 Aligned_cols=30 Identities=17% Similarity=0.261 Sum_probs=22.0
Q ss_pred HHHHHHhhcC-c--ceEEEeeCCCCCCccceec
Q 047385 68 LPIIRDAFNG-M--NGTVITYGQTGAGKTFSME 97 (483)
Q Consensus 68 ~plv~~~l~G-~--n~ti~ayG~tgSGKT~Tm~ 97 (483)
-|-+|.++.| + ...+.-+|++|||||+.+.
T Consensus 10 ~~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~ 42 (243)
T 1n0w_A 10 SKELDKLLQGGIETGSITEMFGEFRTGKTQICH 42 (243)
T ss_dssp CHHHHHHTTTSEETTSEEEEECCTTSSHHHHHH
T ss_pred ChHHHHhhcCCCcCCeEEEEECCCCCcHHHHHH
Confidence 3567888853 3 3467779999999999863
No 122
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=65.44 E-value=2.4 Score=39.67 Aligned_cols=24 Identities=21% Similarity=0.050 Sum_probs=17.4
Q ss_pred HhhcCcceEEEeeCCCCCCccceecC
Q 047385 73 DAFNGMNGTVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 73 ~~l~G~n~ti~ayG~tgSGKT~Tm~G 98 (483)
.++++.+ ++.+|+||+|||+....
T Consensus 104 ~~~~~~~--~ll~~~tG~GKT~~a~~ 127 (237)
T 2fz4_A 104 RWLVDKR--GCIVLPTGSGKTHVAMA 127 (237)
T ss_dssp HHTTTSE--EEEEESSSTTHHHHHHH
T ss_pred HHHhCCC--EEEEeCCCCCHHHHHHH
Confidence 3455655 56678999999998643
No 123
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=64.88 E-value=2.7 Score=41.35 Aligned_cols=26 Identities=23% Similarity=0.328 Sum_probs=18.3
Q ss_pred HHHhhcCcceEEEeeCCCCCCcccee
Q 047385 71 IRDAFNGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 71 v~~~l~G~n~ti~ayG~tgSGKT~Tm 96 (483)
+..++.|....++..++||||||.+.
T Consensus 36 i~~~~~~~~~~~lv~a~TGsGKT~~~ 61 (395)
T 3pey_A 36 LPLLLHNPPRNMIAQSQSGTGKTAAF 61 (395)
T ss_dssp HHHHHCSSCCCEEEECCTTSCHHHHH
T ss_pred HHHHHcCCCCeEEEECCCCCcHHHHH
Confidence 34455663345677899999999864
No 124
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=64.51 E-value=10 Score=24.34 Aligned_cols=27 Identities=26% Similarity=0.279 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047385 411 ITSLQHMVEDLVRAVEELKSENKALKT 437 (483)
Q Consensus 411 ~~~~~~~~~~l~~~~~~~~~e~~~l~~ 437 (483)
..+|+..+++|-....++++|..+||.
T Consensus 3 MnQLE~kVEeLl~~n~~Le~eV~rLk~ 29 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXEVXRLKX 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 345566666676677777777776664
No 125
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=64.51 E-value=2.7 Score=40.39 Aligned_cols=24 Identities=33% Similarity=0.472 Sum_probs=17.3
Q ss_pred HHhhcCcceEEEeeCCCCCCccceec
Q 047385 72 RDAFNGMNGTVITYGQTGAGKTFSME 97 (483)
Q Consensus 72 ~~~l~G~n~ti~ayG~tgSGKT~Tm~ 97 (483)
+.+++|.+ ++..++||||||.+..
T Consensus 26 ~~i~~~~~--~lv~~~TGsGKT~~~~ 49 (337)
T 2z0m_A 26 PLMLQGKN--VVVRAKTGSGKTAAYA 49 (337)
T ss_dssp HHHHTTCC--EEEECCTTSSHHHHHH
T ss_pred HHHhcCCC--EEEEcCCCCcHHHHHH
Confidence 34456776 4567899999998653
No 126
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=63.72 E-value=2.7 Score=41.75 Aligned_cols=24 Identities=29% Similarity=0.533 Sum_probs=17.6
Q ss_pred HHHhhcCcceEEEeeCCCCCCcccee
Q 047385 71 IRDAFNGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 71 v~~~l~G~n~ti~ayG~tgSGKT~Tm 96 (483)
+..+++|.+ ++..++||||||.+.
T Consensus 52 i~~i~~~~~--~li~a~TGsGKT~~~ 75 (400)
T 1s2m_A 52 IPVAITGRD--ILARAKNGTGKTAAF 75 (400)
T ss_dssp HHHHHHTCC--EEEECCTTSCHHHHH
T ss_pred HHHHhcCCC--EEEECCCCcHHHHHH
Confidence 344556776 567889999999764
No 127
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=63.50 E-value=2.6 Score=40.32 Aligned_cols=21 Identities=24% Similarity=0.276 Sum_probs=16.3
Q ss_pred cCcceEEEeeCCCCCCcccee
Q 047385 76 NGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 76 ~G~n~ti~ayG~tgSGKT~Tm 96 (483)
.|....++-||++|+|||++.
T Consensus 35 ~~~~~~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 35 RKNIPHLLFSGPPGTGKTATA 55 (319)
T ss_dssp TTCCCCEEEESSSSSSHHHHH
T ss_pred CCCCCeEEEECcCCcCHHHHH
Confidence 344334888999999999875
No 128
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=63.09 E-value=2.7 Score=45.54 Aligned_cols=28 Identities=25% Similarity=0.246 Sum_probs=18.6
Q ss_pred HHHHhhcCcceEEEeeCCCCCCccceecC
Q 047385 70 IIRDAFNGMNGTVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 70 lv~~~l~G~n~ti~ayG~tgSGKT~Tm~G 98 (483)
.|..++..... .+-.|++|||||+|+..
T Consensus 197 AV~~al~~~~~-~lI~GPPGTGKT~ti~~ 224 (646)
T 4b3f_X 197 AVLFALSQKEL-AIIHGPPGTGKTTTVVE 224 (646)
T ss_dssp HHHHHHHCSSE-EEEECCTTSCHHHHHHH
T ss_pred HHHHHhcCCCc-eEEECCCCCCHHHHHHH
Confidence 34455543333 35689999999999754
No 129
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=63.09 E-value=3.9 Score=38.47 Aligned_cols=36 Identities=22% Similarity=0.187 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHhhcCc-ceEEEeeCCCCCCccce
Q 047385 60 AEVFEFLALPIIRDAFNGM-NGTVITYGQTGAGKTFS 95 (483)
Q Consensus 60 ~~vf~~~~~plv~~~l~G~-n~ti~ayG~tgSGKT~T 95 (483)
+.+|+.+...++.....+. ...|+..|++|||||+.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTl 48 (253)
T 2p5t_B 12 KHALARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTI 48 (253)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHH
T ss_pred HHHHHHHHHHHHccCCcccCCeEEEEECCCCCCHHHH
Confidence 3445554444443333222 24578899999999875
No 130
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=62.58 E-value=2.8 Score=43.37 Aligned_cols=38 Identities=26% Similarity=0.361 Sum_probs=24.3
Q ss_pred chHHHHHHHHHHHHHHhhcCcceEEEeeCCCCCCcccee
Q 047385 58 EQAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 58 ~Q~~vf~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm 96 (483)
.|+.+... ..++...+-.|.-..++-||++|+|||+..
T Consensus 30 Gq~~~~~~-~~~L~~~i~~~~~~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 30 GQQHLLAA-GKPLPRAIEAGHLHSMILWGPPGTGKTTLA 67 (447)
T ss_dssp SCHHHHST-TSHHHHHHHHTCCCEEEEECSTTSSHHHHH
T ss_pred CcHHHHhc-hHHHHHHHHcCCCcEEEEECCCCCcHHHHH
Confidence 35555532 223333333555567899999999999875
No 131
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=62.27 E-value=3.3 Score=37.44 Aligned_cols=29 Identities=21% Similarity=0.202 Sum_probs=20.5
Q ss_pred HHHHHhhc-Ccc--eEEEeeCCCCCCccceec
Q 047385 69 PIIRDAFN-GMN--GTVITYGQTGAGKTFSME 97 (483)
Q Consensus 69 plv~~~l~-G~n--~ti~ayG~tgSGKT~Tm~ 97 (483)
+-+|.++. |+. ..+.-+|++|||||+.+.
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~ 41 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFSL 41 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHHH
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHH
Confidence 45677775 442 356668999999998864
No 132
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=61.72 E-value=4.6 Score=36.54 Aligned_cols=29 Identities=17% Similarity=0.098 Sum_probs=18.4
Q ss_pred HHHHHHhhc--CcceEEEeeCCCCCCcccee
Q 047385 68 LPIIRDAFN--GMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 68 ~plv~~~l~--G~n~ti~ayG~tgSGKT~Tm 96 (483)
..+++.+.. +-.-.|.-.|++|||||+.+
T Consensus 9 ~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 9 QGVLERLDPRQPGRQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp HHHHHHSCTTCCSCEEEEEECCTTSCTHHHH
T ss_pred HHHHHHHHhcCCCCeEEEEECCCCCCHHHHH
Confidence 344444442 33345566799999999875
No 133
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=61.65 E-value=3.4 Score=43.89 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=17.2
Q ss_pred HHhhcCcceEEEeeCCCCCCccceec
Q 047385 72 RDAFNGMNGTVITYGQTGAGKTFSME 97 (483)
Q Consensus 72 ~~~l~G~n~ti~ayG~tgSGKT~Tm~ 97 (483)
+.+.+|...+++ .++||||||.+++
T Consensus 192 ~~~~~~~~~~ll-~~~TGsGKT~~~~ 216 (590)
T 3h1t_A 192 QSVLQGKKRSLI-TMATGTGKTVVAF 216 (590)
T ss_dssp HHHHTTCSEEEE-EECTTSCHHHHHH
T ss_pred HHHhcCCCceEE-EecCCCChHHHHH
Confidence 333446665544 4999999999964
No 134
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=61.55 E-value=3.2 Score=41.40 Aligned_cols=23 Identities=26% Similarity=0.231 Sum_probs=17.4
Q ss_pred HHhhcCcceEEEeeCCCCCCcccee
Q 047385 72 RDAFNGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 72 ~~~l~G~n~ti~ayG~tgSGKT~Tm 96 (483)
..++.|.|+ +..++||||||.+.
T Consensus 47 ~~i~~~~~~--lv~a~TGsGKT~~~ 69 (417)
T 2i4i_A 47 PIIKEKRDL--MACAQTGSGKTAAF 69 (417)
T ss_dssp HHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHccCCCE--EEEcCCCCHHHHHH
Confidence 445678774 56889999999754
No 135
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=60.86 E-value=3.5 Score=37.10 Aligned_cols=29 Identities=21% Similarity=0.250 Sum_probs=22.2
Q ss_pred HHHHHhhc-Ccc--eEEEeeCCCCCCccceec
Q 047385 69 PIIRDAFN-GMN--GTVITYGQTGAGKTFSME 97 (483)
Q Consensus 69 plv~~~l~-G~n--~ti~ayG~tgSGKT~Tm~ 97 (483)
+-+|.++. |+. ..+.-+|++|||||..+.
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~ 38 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLAL 38 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHH
Confidence 56778885 554 367889999999998764
No 136
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=60.49 E-value=3.5 Score=41.37 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=17.4
Q ss_pred HHHhhcCcceEEEeeCCCCCCccce
Q 047385 71 IRDAFNGMNGTVITYGQTGAGKTFS 95 (483)
Q Consensus 71 v~~~l~G~n~ti~ayG~tgSGKT~T 95 (483)
+..+++|.| ++..++||||||..
T Consensus 30 i~~i~~~~~--~lv~apTGsGKT~~ 52 (414)
T 3oiy_A 30 AKRIVQGKS--FTMVAPTGVGKTTF 52 (414)
T ss_dssp HHHHTTTCC--EECCSCSSSSHHHH
T ss_pred HHHHhcCCC--EEEEeCCCCCHHHH
Confidence 344567776 57889999999984
No 137
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=60.49 E-value=4.3 Score=39.12 Aligned_cols=19 Identities=26% Similarity=0.371 Sum_probs=15.7
Q ss_pred cceEEEeeCCCCCCcccee
Q 047385 78 MNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 78 ~n~ti~ayG~tgSGKT~Tm 96 (483)
....|+-||++|+|||+..
T Consensus 37 ~~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CCCCCEEECCTTCCCHHHH
T ss_pred CCCcEEEECCCCCCHHHHH
Confidence 4456788999999999875
No 138
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=59.98 E-value=3.8 Score=37.71 Aligned_cols=25 Identities=20% Similarity=0.224 Sum_probs=17.6
Q ss_pred HHHHhhcCcceEEEeeCCCCCCcccee
Q 047385 70 IIRDAFNGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 70 lv~~~l~G~n~ti~ayG~tgSGKT~Tm 96 (483)
+++++-.|--.+ -.|+.|||||+.+
T Consensus 15 ~l~~i~~Ge~~~--liG~nGsGKSTLl 39 (208)
T 3b85_A 15 YVDAIDTNTIVF--GLGPAGSGKTYLA 39 (208)
T ss_dssp HHHHHHHCSEEE--EECCTTSSTTHHH
T ss_pred HHHhccCCCEEE--EECCCCCCHHHHH
Confidence 445554565444 4899999999876
No 139
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=59.84 E-value=18 Score=41.69 Aligned_cols=21 Identities=43% Similarity=0.665 Sum_probs=19.0
Q ss_pred cCcceEEEeeCCCCCCcccee
Q 047385 76 NGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 76 ~G~n~ti~ayG~tgSGKT~Tm 96 (483)
++.|-||+..|.+|||||.+.
T Consensus 153 ~~~~QsIiisGESGAGKTe~~ 173 (1080)
T 2dfs_A 153 DERNQSIIVSGESGAGKTVSA 173 (1080)
T ss_dssp HTCCEEEEEECSTTSSHHHHH
T ss_pred cCCCcEEEEcCCCCCCccchH
Confidence 699999999999999999663
No 140
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=59.58 E-value=4.2 Score=40.45 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=19.0
Q ss_pred HHhhcC---cceEEEe--eCCCCCCcccee
Q 047385 72 RDAFNG---MNGTVIT--YGQTGAGKTFSM 96 (483)
Q Consensus 72 ~~~l~G---~n~ti~a--yG~tgSGKT~Tm 96 (483)
..+..| -...++. ||+.|+|||+.+
T Consensus 40 ~~~~~~~~~~~~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 40 NRLLSGAGLSDVNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp HHHHTSSCBCCEEEEEECTTCCSSSHHHHH
T ss_pred HHHhcCCCCCCCEEEEeCcCcCCCCHHHHH
Confidence 444555 4557888 999999999876
No 141
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=59.38 E-value=2.5 Score=37.23 Aligned_cols=17 Identities=29% Similarity=0.511 Sum_probs=14.1
Q ss_pred EEEeeCCCCCCccceec
Q 047385 81 TVITYGQTGAGKTFSME 97 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm~ 97 (483)
.+.-.|++|||||+.+-
T Consensus 11 i~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 45668999999999874
No 142
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=58.53 E-value=2.2 Score=44.61 Aligned_cols=51 Identities=24% Similarity=0.255 Sum_probs=27.8
Q ss_pred eeEeecEEecCCCchHHHHHHHHHHHHH-HhhcC----cceEEEeeCCCCCCcccee
Q 047385 45 FKFGFDRVFYEKSEQAEVFEFLALPIIR-DAFNG----MNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 45 ~~F~FD~Vf~~~~~Q~~vf~~~~~plv~-~~l~G----~n~ti~ayG~tgSGKT~Tm 96 (483)
...+|+.|.+.+..-+++.+- +..+-. ..+.. ....|+-||++|+|||+..
T Consensus 11 ~~~~f~di~G~~~~~~~l~e~-v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 11 KRVTFKDVGGAEEAIEELKEV-VEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLA 66 (476)
T ss_dssp CCCCGGGCCSCHHHHHHHHHH-HHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHHH-HHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHH
Confidence 356788887754433333322 211100 11111 2235889999999999875
No 143
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=58.40 E-value=5.3 Score=35.99 Aligned_cols=18 Identities=22% Similarity=0.071 Sum_probs=14.5
Q ss_pred ceEEEeeCCCCCCcccee
Q 047385 79 NGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 79 n~ti~ayG~tgSGKT~Tm 96 (483)
...|...|++|||||+.+
T Consensus 22 ~~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp SEEEEEEECTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 346777899999999875
No 144
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=58.37 E-value=4.1 Score=36.87 Aligned_cols=28 Identities=21% Similarity=0.415 Sum_probs=20.5
Q ss_pred HHHHHhhc-Ccc--eEEEeeCCCCCCcccee
Q 047385 69 PIIRDAFN-GMN--GTVITYGQTGAGKTFSM 96 (483)
Q Consensus 69 plv~~~l~-G~n--~ti~ayG~tgSGKT~Tm 96 (483)
|-+|.++. |+. ..+.-+|++|||||..+
T Consensus 12 ~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll 42 (231)
T 4a74_A 12 KSLDKLLGGGIETQAITEVFGEFGSGKTQLA 42 (231)
T ss_dssp HHHHHHTTSSEESSEEEEEEESTTSSHHHHH
T ss_pred hhHHhHhcCCCCCCcEEEEECCCCCCHHHHH
Confidence 55677774 443 35677899999999886
No 145
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=58.36 E-value=15 Score=26.48 Aligned_cols=30 Identities=27% Similarity=0.357 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 047385 416 HMVEDLVRAVEELKSENKALKTRIAAAGKI 445 (483)
Q Consensus 416 ~~~~~l~~~~~~~~~e~~~l~~~~~~~~~~ 445 (483)
+-+++|...+..|+.+|..|+.++..+++.
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~ 51 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEELKALKDL 51 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446777778888899999999999888764
No 146
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=58.27 E-value=4 Score=40.17 Aligned_cols=25 Identities=36% Similarity=0.539 Sum_probs=18.3
Q ss_pred HHHHhhcCcceEEEeeCCCCCCcccee
Q 047385 70 IIRDAFNGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 70 lv~~~l~G~n~ti~ayG~tgSGKT~Tm 96 (483)
.+..++.|.+ ++..++||||||.+.
T Consensus 38 ~i~~~~~~~~--~lv~a~TGsGKT~~~ 62 (391)
T 1xti_A 38 CIPQAILGMD--VLCQAKSGMGKTAVF 62 (391)
T ss_dssp HHHHHTTTCC--EEEECSSCSSHHHHH
T ss_pred HHHHHhcCCc--EEEECCCCCcHHHHH
Confidence 3455667876 466789999999864
No 147
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=58.05 E-value=5.1 Score=39.36 Aligned_cols=16 Identities=38% Similarity=0.451 Sum_probs=13.7
Q ss_pred EEEeeCCCCCCcccee
Q 047385 81 TVITYGQTGAGKTFSM 96 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm 96 (483)
.++-||++|+|||+.+
T Consensus 53 ~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CEEEESSTTSSHHHHH
T ss_pred eEEEECCCCCcHHHHH
Confidence 4667999999999886
No 148
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=57.52 E-value=4.1 Score=42.56 Aligned_cols=26 Identities=23% Similarity=0.303 Sum_probs=19.0
Q ss_pred HHHhhcCcceEEEeeCCCCCCcccee
Q 047385 71 IRDAFNGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 71 v~~~l~G~n~ti~ayG~tgSGKT~Tm 96 (483)
+..+++|.+..++..++||||||.+.
T Consensus 150 i~~i~~~~~~~~ll~apTGsGKT~~~ 175 (508)
T 3fho_A 150 LPLLLSNPPRNMIGQSQSGTGKTAAF 175 (508)
T ss_dssp HHHHHCSSCCCEEEECCSSTTSHHHH
T ss_pred HHHHHcCCCCCEEEECCCCccHHHHH
Confidence 45566773445677899999999873
No 149
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=57.36 E-value=3.1 Score=40.52 Aligned_cols=17 Identities=29% Similarity=0.493 Sum_probs=14.3
Q ss_pred EEEeeCCCCCCccceec
Q 047385 81 TVITYGQTGAGKTFSME 97 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm~ 97 (483)
.|+-||++|+|||+...
T Consensus 48 ~vll~G~pGtGKT~la~ 64 (331)
T 2r44_A 48 HILLEGVPGLAKTLSVN 64 (331)
T ss_dssp CEEEESCCCHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHH
Confidence 56779999999998763
No 150
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=57.20 E-value=17 Score=23.34 Aligned_cols=26 Identities=8% Similarity=0.185 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047385 412 TSLQHMVEDLVRAVEELKSENKALKT 437 (483)
Q Consensus 412 ~~~~~~~~~l~~~~~~~~~e~~~l~~ 437 (483)
.+++..+++|-....+++.|..+||.
T Consensus 4 nQLEdKVEeLl~~~~~Le~EV~RLk~ 29 (34)
T 3c3f_A 4 XQIEXKLEXILSXLYHXENEXARIXK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 45556666666666777777766664
No 151
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=57.17 E-value=2.9 Score=39.86 Aligned_cols=23 Identities=17% Similarity=0.088 Sum_probs=15.9
Q ss_pred hhcCcceEEEeeCCCCCCccceecC
Q 047385 74 AFNGMNGTVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 74 ~l~G~n~ti~ayG~tgSGKT~Tm~G 98 (483)
++.|.++ +..++||||||.+...
T Consensus 125 ~l~~~~~--ll~~~tGsGKT~~~~~ 147 (282)
T 1rif_A 125 GLVNRRR--ILNLPTSAGRSLIQAL 147 (282)
T ss_dssp HHHHSEE--EECCCTTSCHHHHHHH
T ss_pred HHhcCCe--EEEcCCCCCcHHHHHH
Confidence 3445444 3389999999998643
No 152
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=57.02 E-value=5 Score=42.09 Aligned_cols=26 Identities=35% Similarity=0.577 Sum_probs=19.5
Q ss_pred HHHHhhcCcceEEEeeCCCCCCccce
Q 047385 70 IIRDAFNGMNGTVITYGQTGAGKTFS 95 (483)
Q Consensus 70 lv~~~l~G~n~ti~ayG~tgSGKT~T 95 (483)
++..++.|.+--++..++||||||.+
T Consensus 102 ~i~~~l~~~~~~~lv~apTGsGKTl~ 127 (563)
T 3i5x_A 102 TIKPILSSEDHDVIARAKTGTGKTFA 127 (563)
T ss_dssp HHHHHHSSSSEEEEEECCTTSCHHHH
T ss_pred HHHHHhcCCCCeEEEECCCCCCccHH
Confidence 45566655555678899999999986
No 153
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=56.97 E-value=2.1 Score=45.10 Aligned_cols=51 Identities=25% Similarity=0.286 Sum_probs=28.5
Q ss_pred eeEeecEEecCCCchHHHHHHHHHHHHH-HhhcCc----ceEEEeeCCCCCCcccee
Q 047385 45 FKFGFDRVFYEKSEQAEVFEFLALPIIR-DAFNGM----NGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 45 ~~F~FD~Vf~~~~~Q~~vf~~~~~plv~-~~l~G~----n~ti~ayG~tgSGKT~Tm 96 (483)
..++||.|.+.+..-.++-+ ++..+-. ..+... ...|+-||++|+|||+.+
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~-lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKE-IVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 81 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHH-HHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCCHHHcCCcHHHHHHHHH-HHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHH
Confidence 45778888775443333322 2221111 122222 224889999999999876
No 154
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=56.50 E-value=5.2 Score=41.44 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=17.8
Q ss_pred cCcceEEEeeCCCCCCccceecC
Q 047385 76 NGMNGTVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 76 ~G~n~ti~ayG~tgSGKT~Tm~G 98 (483)
.+....++-||++|+|||+...+
T Consensus 198 r~~~~~~LL~G~pG~GKT~la~~ 220 (468)
T 3pxg_A 198 RRTKNNPVLIGEPGVGKTAIAEG 220 (468)
T ss_dssp CSSSCEEEEESCTTTTTHHHHHH
T ss_pred ccCCCCeEEECCCCCCHHHHHHH
Confidence 34455678899999999998754
No 155
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=56.40 E-value=3.6 Score=35.22 Aligned_cols=16 Identities=25% Similarity=0.432 Sum_probs=13.2
Q ss_pred EEEeeCCCCCCcccee
Q 047385 81 TVITYGQTGAGKTFSM 96 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm 96 (483)
.|+-.|++|||||+..
T Consensus 3 ~I~l~G~~GsGKsT~a 18 (179)
T 3lw7_A 3 VILITGMPGSGKSEFA 18 (179)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678899999999753
No 156
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=56.18 E-value=16 Score=28.42 Aligned_cols=35 Identities=20% Similarity=0.327 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047385 408 LQTITSLQHMVEDLVRAVEELKSENKALKTRIAAA 442 (483)
Q Consensus 408 ~~~~~~~~~~~~~l~~~~~~~~~e~~~l~~~~~~~ 442 (483)
..-|..|++....+...++.++.+++.|+.++++|
T Consensus 46 ~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~~l 80 (80)
T 1nlw_A 46 KLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLEKL 80 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 34577888888888888888888898888888754
No 157
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=56.18 E-value=15 Score=23.51 Aligned_cols=25 Identities=32% Similarity=0.359 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 047385 413 SLQHMVEDLVRAVEELKSENKALKT 437 (483)
Q Consensus 413 ~~~~~~~~l~~~~~~~~~e~~~l~~ 437 (483)
+|+..+++|-....+++.|..+|+.
T Consensus 4 QLE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4455556666666666666665553
No 158
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=55.97 E-value=6.7 Score=38.40 Aligned_cols=18 Identities=28% Similarity=0.337 Sum_probs=15.4
Q ss_pred ceEEEeeCCCCCCcccee
Q 047385 79 NGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 79 n~ti~ayG~tgSGKT~Tm 96 (483)
...++-||++|+|||+++
T Consensus 38 ~~~~ll~G~~G~GKT~la 55 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIA 55 (373)
T ss_dssp CSEEEEESCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 446788999999999886
No 159
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=55.48 E-value=21 Score=28.25 Aligned_cols=37 Identities=22% Similarity=0.302 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 047385 408 LQTITSLQHMVEDLVRAVEELKSENKALKTRIAAAGK 444 (483)
Q Consensus 408 ~~~~~~~~~~~~~l~~~~~~~~~e~~~l~~~~~~~~~ 444 (483)
..-|..|+.....+...++.++.++..|+.++++|+.
T Consensus 51 ~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~~ 87 (88)
T 1nkp_A 51 TAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQLGG 87 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3457788888888888899999999999999998763
No 160
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=55.26 E-value=4.8 Score=38.47 Aligned_cols=21 Identities=38% Similarity=0.493 Sum_probs=15.8
Q ss_pred cCcceEEEeeCCCCCCcccee
Q 047385 76 NGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 76 ~G~n~ti~ayG~tgSGKT~Tm 96 (483)
.|.-..++-||++|+|||++.
T Consensus 39 ~~~~~~~ll~G~~G~GKt~la 59 (323)
T 1sxj_B 39 DGNMPHMIISGMPGIGKTTSV 59 (323)
T ss_dssp SCCCCCEEEECSTTSSHHHHH
T ss_pred cCCCCeEEEECcCCCCHHHHH
Confidence 343233888999999999875
No 161
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=55.20 E-value=5.8 Score=38.33 Aligned_cols=19 Identities=21% Similarity=0.287 Sum_probs=15.4
Q ss_pred ceEEEeeCCCCCCccceec
Q 047385 79 NGTVITYGQTGAGKTFSME 97 (483)
Q Consensus 79 n~ti~ayG~tgSGKT~Tm~ 97 (483)
...++-||++|+|||++..
T Consensus 48 ~~~~L~~G~~G~GKT~la~ 66 (324)
T 3u61_B 48 PHIILHSPSPGTGKTTVAK 66 (324)
T ss_dssp CSEEEECSSTTSSHHHHHH
T ss_pred CeEEEeeCcCCCCHHHHHH
Confidence 3567888999999999863
No 162
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=55.17 E-value=6 Score=40.74 Aligned_cols=37 Identities=19% Similarity=0.209 Sum_probs=25.5
Q ss_pred CCchHHHHHHHHHHHHHHhhcCcceEEEeeCCCCCCccceec
Q 047385 56 KSEQAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSME 97 (483)
Q Consensus 56 ~~~Q~~vf~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm~ 97 (483)
+..|.+.+..+.. .+-.|- ..++..|+.|||||+++.
T Consensus 27 n~~Q~~av~~~~~----~i~~~~-~~~li~G~aGTGKT~ll~ 63 (459)
T 3upu_A 27 TEGQKNAFNIVMK----AIKEKK-HHVTINGPAGTGATTLTK 63 (459)
T ss_dssp CHHHHHHHHHHHH----HHHSSS-CEEEEECCTTSCHHHHHH
T ss_pred CHHHHHHHHHHHH----HHhcCC-CEEEEEeCCCCCHHHHHH
Confidence 4578887776542 222333 378889999999998763
No 163
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=55.05 E-value=4.2 Score=39.80 Aligned_cols=16 Identities=31% Similarity=0.621 Sum_probs=14.1
Q ss_pred EEeeCCCCCCccceec
Q 047385 82 VITYGQTGAGKTFSME 97 (483)
Q Consensus 82 i~ayG~tgSGKT~Tm~ 97 (483)
++-||++|+|||+++.
T Consensus 39 ~ll~Gp~G~GKTtl~~ 54 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCM 54 (354)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 7789999999999863
No 164
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=54.99 E-value=6.7 Score=43.73 Aligned_cols=81 Identities=20% Similarity=0.392 Sum_probs=50.0
Q ss_pred eEeecEEecCCCchHHHHHHHHHHHHH-HhhcCcc----eEEEeeCCCCCCccceec------CCCCCCc-----ccccc
Q 047385 46 KFGFDRVFYEKSEQAEVFEFLALPIIR-DAFNGMN----GTVITYGQTGAGKTFSME------GPSILAC-----DEQKK 109 (483)
Q Consensus 46 ~F~FD~Vf~~~~~Q~~vf~~~~~plv~-~~l~G~n----~ti~ayG~tgSGKT~Tm~------G~~~~~~-----~~~~~ 109 (483)
..+||.|-+-+..-+++.+.+..|+.. .++.++. ..|+-||++|+|||...- |...... -....
T Consensus 200 ~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~ 279 (806)
T 3cf2_A 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLA 279 (806)
T ss_dssp SCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCT
T ss_pred CCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccc
Confidence 467888877776666777666667653 4555544 368999999999997542 1100000 01224
Q ss_pred CchhhhHHHHHHhhhcC
Q 047385 110 GLLQRTVDELFDCMKSS 126 (483)
Q Consensus 110 Giipr~~~~LF~~i~~~ 126 (483)
|--...++.+|+.....
T Consensus 280 gese~~lr~lF~~A~~~ 296 (806)
T 3cf2_A 280 GESESNLRKAFEEAEKN 296 (806)
T ss_dssp THHHHHHHHHHHHHTTS
T ss_pred hHHHHHHHHHHHHHHHc
Confidence 55567778888776554
No 165
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=54.80 E-value=5.2 Score=40.76 Aligned_cols=24 Identities=33% Similarity=0.488 Sum_probs=18.2
Q ss_pred HHHhhcCcceEEEeeCCCCCCcccee
Q 047385 71 IRDAFNGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 71 v~~~l~G~n~ti~ayG~tgSGKT~Tm 96 (483)
+..++.|.+ +++.++||||||.+.
T Consensus 87 i~~i~~g~d--~i~~a~TGsGKT~a~ 110 (434)
T 2db3_A 87 IPVISSGRD--LMACAQTGSGKTAAF 110 (434)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHhcCCC--EEEECCCCCCchHHH
Confidence 445568877 467889999999863
No 166
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=54.76 E-value=1.9e+02 Score=30.05 Aligned_cols=29 Identities=14% Similarity=0.359 Sum_probs=16.5
Q ss_pred eEeeCCCCCCHHHHHHHHHHHHHhccccc
Q 047385 307 LCCCSPSTSNSAESLSTLRFGTRAKHIKA 335 (483)
Q Consensus 307 I~~isp~~~~~~ETlsTL~fa~rak~I~~ 335 (483)
+||-.+........+..+.....+.....
T Consensus 391 ~cc~~~~~~~~~~~~~~l~~~~~~~~~~~ 419 (597)
T 3oja_B 391 LCCKESDKPYLDRLLQYIALTSVVEKVQR 419 (597)
T ss_dssp EEEECCSSHHHHHHHHHHHHHHHHHTC--
T ss_pred ccccCCCccchhHHHHHhhHHHHhhcccc
Confidence 56666666566666666666666555544
No 167
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=54.56 E-value=3.4 Score=36.58 Aligned_cols=16 Identities=25% Similarity=0.515 Sum_probs=12.9
Q ss_pred EEEeeCCCCCCcccee
Q 047385 81 TVITYGQTGAGKTFSM 96 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm 96 (483)
.+.-.|++|||||..+
T Consensus 7 ~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIK 22 (180)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4556799999999865
No 168
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=54.38 E-value=6.1 Score=42.33 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=18.6
Q ss_pred HHHHhhcCcceEEEeeCCCCCCcccee
Q 047385 70 IIRDAFNGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 70 lv~~~l~G~n~ti~ayG~tgSGKT~Tm 96 (483)
+|..++.|.+ +++.++||+|||.+.
T Consensus 52 ~i~~il~g~d--~lv~~pTGsGKTl~~ 76 (591)
T 2v1x_A 52 TINVTMAGKE--VFLVMPTGGGKSLCY 76 (591)
T ss_dssp HHHHHHTTCC--EEEECCTTSCTTHHH
T ss_pred HHHHHHcCCC--EEEEECCCChHHHHH
Confidence 3445567887 567889999999853
No 169
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=54.34 E-value=3.9 Score=37.18 Aligned_cols=17 Identities=24% Similarity=0.309 Sum_probs=13.7
Q ss_pred eEEEeeCCCCCCcccee
Q 047385 80 GTVITYGQTGAGKTFSM 96 (483)
Q Consensus 80 ~ti~ayG~tgSGKT~Tm 96 (483)
..|.-.|++|||||+++
T Consensus 9 ~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred cEEEEECcCCCCHHHHH
Confidence 35666899999999875
No 170
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=54.12 E-value=15 Score=27.22 Aligned_cols=30 Identities=33% Similarity=0.402 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 047385 416 HMVEDLVRAVEELKSENKALKTRIAAAGKI 445 (483)
Q Consensus 416 ~~~~~l~~~~~~~~~e~~~l~~~~~~~~~~ 445 (483)
+.+.+|..++.+|+.+|..|+.+++.|.+.
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~ 59 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARLKKL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666667777777777777777776543
No 171
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=53.98 E-value=3.5 Score=36.80 Aligned_cols=16 Identities=38% Similarity=0.420 Sum_probs=12.8
Q ss_pred EEEeeCCCCCCcccee
Q 047385 81 TVITYGQTGAGKTFSM 96 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm 96 (483)
.|.-.|++|||||+.+
T Consensus 9 ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLV 24 (205)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 3455799999999875
No 172
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=53.82 E-value=5.4 Score=41.35 Aligned_cols=24 Identities=42% Similarity=0.631 Sum_probs=17.8
Q ss_pred HHHhhcCcceEEEeeCCCCCCcccee
Q 047385 71 IRDAFNGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 71 v~~~l~G~n~ti~ayG~tgSGKT~Tm 96 (483)
+..++.|.| ++..++||||||.+.
T Consensus 16 i~~~~~~~~--~l~~~~tGsGKT~~~ 39 (556)
T 4a2p_A 16 AQPAINGKN--ALICAPTGSGKTFVS 39 (556)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHcCCC--EEEEcCCCChHHHHH
Confidence 344567877 466889999999874
No 173
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=53.57 E-value=3.4 Score=40.66 Aligned_cols=24 Identities=33% Similarity=0.520 Sum_probs=17.6
Q ss_pred HHHhhcCcceEEEeeCCCCCCcccee
Q 047385 71 IRDAFNGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 71 v~~~l~G~n~ti~ayG~tgSGKT~Tm 96 (483)
+..++.|.+ ++..++||||||.+.
T Consensus 52 i~~i~~~~~--~lv~~~TGsGKT~~~ 75 (394)
T 1fuu_A 52 IMPIIEGHD--VLAQAQSGTGKTGTF 75 (394)
T ss_dssp HHHHHHTCC--EEECCCSSHHHHHHH
T ss_pred HHHHhCCCC--EEEECCCCChHHHHH
Confidence 344556766 466899999999873
No 174
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=53.28 E-value=3.8 Score=42.04 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=19.9
Q ss_pred hhcCcceEEEeeCCCCCCcccee
Q 047385 74 AFNGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 74 ~l~G~n~ti~ayG~tgSGKT~Tm 96 (483)
+++|++-.|...|++|+|||..|
T Consensus 26 vl~~vsf~I~lvG~sGaGKSTLl 48 (418)
T 2qag_C 26 VKRGFEFTLMVVGESGLGKSTLI 48 (418)
T ss_dssp CC-CCCEEEEEECCTTSSHHHHH
T ss_pred EecCCCEEEEEECCCCCcHHHHH
Confidence 57899999999999999999865
No 175
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=53.25 E-value=5 Score=38.86 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=16.5
Q ss_pred HHhhcCcceEEEeeCCCCCCcccee
Q 047385 72 RDAFNGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 72 ~~~l~G~n~ti~ayG~tgSGKT~Tm 96 (483)
..+++|.. .++..++||||||.+.
T Consensus 38 ~~~~~~~~-~~l~~~~TGsGKT~~~ 61 (367)
T 1hv8_A 38 PLFLNDEY-NIVAQARTGSGKTASF 61 (367)
T ss_dssp HHHHHTCS-EEEEECCSSSSHHHHH
T ss_pred HHHhCCCC-CEEEECCCCChHHHHH
Confidence 33445632 3567899999999874
No 176
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=53.18 E-value=4.9 Score=43.20 Aligned_cols=18 Identities=28% Similarity=0.447 Sum_probs=15.2
Q ss_pred eEEEeeCCCCCCccceec
Q 047385 80 GTVITYGQTGAGKTFSME 97 (483)
Q Consensus 80 ~ti~ayG~tgSGKT~Tm~ 97 (483)
..++..|++|||||+|+.
T Consensus 165 ~~~vi~G~pGTGKTt~l~ 182 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVA 182 (608)
T ss_dssp SEEEEECCTTSTHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHH
Confidence 467889999999999864
No 177
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=53.03 E-value=3.5 Score=36.66 Aligned_cols=15 Identities=27% Similarity=0.636 Sum_probs=12.4
Q ss_pred EEeeCCCCCCcccee
Q 047385 82 VITYGQTGAGKTFSM 96 (483)
Q Consensus 82 i~ayG~tgSGKT~Tm 96 (483)
+.-.|++|||||+++
T Consensus 4 i~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 4 IVISGPSGTGKSTLL 18 (186)
T ss_dssp EEEESSSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 445799999999876
No 178
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=52.94 E-value=19 Score=26.57 Aligned_cols=28 Identities=36% Similarity=0.419 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 047385 418 VEDLVRAVEELKSENKALKTRIAAAGKI 445 (483)
Q Consensus 418 ~~~l~~~~~~~~~e~~~l~~~~~~~~~~ 445 (483)
.+++....++++.+|..|+.+++.++.+
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E 52 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKE 52 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555554443
No 179
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=52.82 E-value=15 Score=29.87 Aligned_cols=20 Identities=5% Similarity=0.009 Sum_probs=14.7
Q ss_pred hHHHHHHHHHhhhhcccccc
Q 047385 457 YASIVHKISDRLSHLVSWIW 476 (483)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~ 476 (483)
....+.+|..+++.|+.-+.
T Consensus 73 ~~~~~e~Lq~E~erLr~~v~ 92 (100)
T 1go4_E 73 LREDHSQLQAECERLRGLLR 92 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45778888888888875543
No 180
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=52.51 E-value=43 Score=27.81 Aligned_cols=34 Identities=12% Similarity=0.218 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 047385 410 TITSLQHMVEDLVRAVEELKSENKALKTRIAAAG 443 (483)
Q Consensus 410 ~~~~~~~~~~~l~~~~~~~~~e~~~l~~~~~~~~ 443 (483)
.+.+|+.++++|..++++...+.++||.+...+.
T Consensus 72 ~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~ 105 (121)
T 3mq7_A 72 KVEELEGEITTLNHKLQDASAEVERLRRENQVLS 105 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhh
Confidence 4677778888888888888888888887776543
No 181
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=52.24 E-value=4.9 Score=36.79 Aligned_cols=27 Identities=26% Similarity=0.473 Sum_probs=19.2
Q ss_pred HHHHhhcC-c--ceEEEeeCCCCCCcccee
Q 047385 70 IIRDAFNG-M--NGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 70 lv~~~l~G-~--n~ti~ayG~tgSGKT~Tm 96 (483)
-+|.++.| + ...+.-+|++|||||..+
T Consensus 11 ~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~ 40 (247)
T 2dr3_A 11 GVDEILHGGIPERNVVLLSGGPGTGKTIFS 40 (247)
T ss_dssp THHHHTTTSEETTCEEEEEECTTSSHHHHH
T ss_pred hHHHHcCCCCCCCcEEEEECCCCCCHHHHH
Confidence 35666543 3 335677999999999985
No 182
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=52.20 E-value=3.3 Score=46.44 Aligned_cols=29 Identities=28% Similarity=0.465 Sum_probs=20.1
Q ss_pred HHHHhhcCcceEEEeeCCCCCCccceecC
Q 047385 70 IIRDAFNGMNGTVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 70 lv~~~l~G~n~ti~ayG~tgSGKT~Tm~G 98 (483)
+++.+..+....++-||++|+|||+.+.+
T Consensus 182 l~~~l~~~~~~~vlL~G~pG~GKT~la~~ 210 (854)
T 1qvr_A 182 VIQILLRRTKNNPVLIGEPGVGKTAIVEG 210 (854)
T ss_dssp HHHHHHCSSCCCCEEEECTTSCHHHHHHH
T ss_pred HHHHHhcCCCCceEEEcCCCCCHHHHHHH
Confidence 33333445444567799999999998755
No 183
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=52.17 E-value=70 Score=24.82 Aligned_cols=42 Identities=24% Similarity=0.208 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhh
Q 047385 410 TITSLQHMVEDLVRAVEELKSENKALKTRIAAAGKIDAFHKE 451 (483)
Q Consensus 410 ~~~~~~~~~~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~ 451 (483)
....+-|++.+|+.++.+++.|..+...++.....+.+..+.
T Consensus 20 ~~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~ 61 (81)
T 3qh9_A 20 KAEELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQE 61 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 344567788888888888877777776666665555554433
No 184
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=52.02 E-value=9.1 Score=37.82 Aligned_cols=17 Identities=29% Similarity=0.483 Sum_probs=14.2
Q ss_pred eEEEeeCCCCCCcccee
Q 047385 80 GTVITYGQTGAGKTFSM 96 (483)
Q Consensus 80 ~ti~ayG~tgSGKT~Tm 96 (483)
..+.-.|++|||||+++
T Consensus 130 ~vi~lvG~nGaGKTTll 146 (328)
T 3e70_C 130 YVIMFVGFNGSGKTTTI 146 (328)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45667799999999886
No 185
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=51.78 E-value=52 Score=37.87 Aligned_cols=38 Identities=13% Similarity=0.190 Sum_probs=17.6
Q ss_pred CchhhhHHHHHHhhhcC-CCCcEEEEEEeEEEEecceee
Q 047385 110 GLLQRTVDELFDCMKSS-DASVKFTIKLSMVEIYMEKVR 147 (483)
Q Consensus 110 Giipr~~~~LF~~i~~~-~~~~~~~v~vS~~EIyne~v~ 147 (483)
+|..+.+.||...|... .........+..+.||.=.++
T Consensus 406 ~lY~~LF~wlV~~iN~~l~~~~~~~~~IgvLDI~GFE~f 444 (1080)
T 2dfs_A 406 HIYANLFNWIVDHVNKALHSTVKQHSFIGVLDIYGFETF 444 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSSCCCEEEEEEEECCCCCC
T ss_pred HHHHHHHHHHHHHHHHhhccccccCceEEeeccCCcccc
Confidence 55555666666555431 111112344555666654433
No 186
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=51.77 E-value=4.7 Score=34.91 Aligned_cols=15 Identities=33% Similarity=0.554 Sum_probs=13.1
Q ss_pred EEEeeCCCCCCccce
Q 047385 81 TVITYGQTGAGKTFS 95 (483)
Q Consensus 81 ti~ayG~tgSGKT~T 95 (483)
.|+..|.+|||||+.
T Consensus 4 ~I~i~G~~GsGKST~ 18 (181)
T 1ly1_A 4 IILTIGCPGSGKSTW 18 (181)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEecCCCCCHHHH
Confidence 578899999999875
No 187
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=51.61 E-value=6.1 Score=40.77 Aligned_cols=23 Identities=43% Similarity=0.502 Sum_probs=17.2
Q ss_pred HHhhcCcceEEEeeCCCCCCcccee
Q 047385 72 RDAFNGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 72 ~~~l~G~n~ti~ayG~tgSGKT~Tm 96 (483)
..++.|.++ +..++||||||.+.
T Consensus 14 ~~~~~~~~~--l~~~~tGsGKT~~~ 36 (555)
T 3tbk_A 14 LPAKKGKNT--IICAPTGCGKTFVS 36 (555)
T ss_dssp HHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHhCCCCE--EEEeCCCChHHHHH
Confidence 344578774 56789999999774
No 188
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=51.35 E-value=4.8 Score=34.99 Aligned_cols=17 Identities=29% Similarity=0.366 Sum_probs=14.1
Q ss_pred eEEEeeCCCCCCcccee
Q 047385 80 GTVITYGQTGAGKTFSM 96 (483)
Q Consensus 80 ~ti~ayG~tgSGKT~Tm 96 (483)
..|+..|.+|||||+..
T Consensus 4 ~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35788999999998763
No 189
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=51.33 E-value=33 Score=21.91 Aligned_cols=26 Identities=12% Similarity=0.087 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047385 412 TSLQHMVEDLVRAVEELKSENKALKT 437 (483)
Q Consensus 412 ~~~~~~~~~l~~~~~~~~~e~~~l~~ 437 (483)
.+|+..++++-.+..+++.|..+|+.
T Consensus 3 nQLEdKVEell~~~~~le~EV~Rl~~ 28 (33)
T 2wq1_A 3 KQLEDKIEENTSKIYHNTNEIARNTK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34556666676677777777666654
No 190
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=51.29 E-value=6.8 Score=38.04 Aligned_cols=20 Identities=30% Similarity=0.531 Sum_probs=16.3
Q ss_pred CcceEEEeeCCCCCCcccee
Q 047385 77 GMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 77 G~n~ti~ayG~tgSGKT~Tm 96 (483)
..+..|+-||++|+|||+..
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp STTSCEEEESCTTSCHHHHH
T ss_pred CCCCcEEEECCCCchHHHHH
Confidence 44567888999999999764
No 191
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=51.16 E-value=6 Score=40.46 Aligned_cols=24 Identities=21% Similarity=0.048 Sum_probs=17.3
Q ss_pred HHhhcCcceEEEeeCCCCCCccceec
Q 047385 72 RDAFNGMNGTVITYGQTGAGKTFSME 97 (483)
Q Consensus 72 ~~~l~G~n~ti~ayG~tgSGKT~Tm~ 97 (483)
..+++|.+ ++..|+||||||.+..
T Consensus 103 ~~i~~~~~--~ll~~~TGsGKT~~~l 126 (472)
T 2fwr_A 103 ERWLVDKR--GCIVLPTGSGKTHVAM 126 (472)
T ss_dssp HHHTTTTE--EEEECCTTSCHHHHHH
T ss_pred HHHHhcCC--EEEEeCCCCCHHHHHH
Confidence 34455654 5668999999999863
No 192
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=50.91 E-value=4.1 Score=40.42 Aligned_cols=18 Identities=33% Similarity=0.625 Sum_probs=14.8
Q ss_pred ceEEEeeCCCCCCcccee
Q 047385 79 NGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 79 n~ti~ayG~tgSGKT~Tm 96 (483)
...|+-||++|+|||+..
T Consensus 51 ~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 346788999999999864
No 193
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=50.82 E-value=6.4 Score=38.85 Aligned_cols=19 Identities=53% Similarity=0.695 Sum_probs=14.8
Q ss_pred cCcceEEEeeCCCCCCcccee
Q 047385 76 NGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 76 ~G~n~ti~ayG~tgSGKT~Tm 96 (483)
.|.+ +.-.|++|||||+++
T Consensus 170 ~g~~--v~i~G~~GsGKTTll 188 (330)
T 2pt7_A 170 IGKN--VIVCGGTGSGKTTYI 188 (330)
T ss_dssp HTCC--EEEEESTTSCHHHHH
T ss_pred CCCE--EEEECCCCCCHHHHH
Confidence 5664 445799999999876
No 194
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=50.78 E-value=4.2 Score=40.53 Aligned_cols=18 Identities=33% Similarity=0.637 Sum_probs=15.1
Q ss_pred ceEEEeeCCCCCCcccee
Q 047385 79 NGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 79 n~ti~ayG~tgSGKT~Tm 96 (483)
...|+-||++|+|||++.
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 446888999999999875
No 195
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=50.77 E-value=3.8 Score=37.04 Aligned_cols=16 Identities=38% Similarity=0.627 Sum_probs=13.2
Q ss_pred EEEeeCCCCCCcccee
Q 047385 81 TVITYGQTGAGKTFSM 96 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm 96 (483)
.+.-.|++|||||.++
T Consensus 6 ~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLL 21 (198)
T ss_dssp CEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3556899999999886
No 196
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=50.75 E-value=27 Score=36.84 Aligned_cols=8 Identities=13% Similarity=0.268 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 047385 364 ILNKLRER 371 (483)
Q Consensus 364 ~~~~l~~~ 371 (483)
.++++.++
T Consensus 464 ~i~~l~~~ 471 (597)
T 3oja_B 464 EVQQLTNE 471 (597)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34444433
No 197
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=50.60 E-value=34 Score=21.82 Aligned_cols=26 Identities=4% Similarity=0.117 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047385 412 TSLQHMVEDLVRAVEELKSENKALKT 437 (483)
Q Consensus 412 ~~~~~~~~~l~~~~~~~~~e~~~l~~ 437 (483)
.+++..+++|-.+..+++.|..+||.
T Consensus 3 nQLEdKvEeLl~~~~~Le~EV~RLk~ 28 (33)
T 3c3g_A 3 KXIEXKLXEIXSKXYHXENXLARIKX 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34555666666666666666666654
No 198
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=50.56 E-value=5.8 Score=42.71 Aligned_cols=18 Identities=28% Similarity=0.433 Sum_probs=14.8
Q ss_pred EEEeeCCCCCCccceecC
Q 047385 81 TVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm~G 98 (483)
.++..|++|||||+|+..
T Consensus 197 ~~li~GppGTGKT~~~~~ 214 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSAT 214 (624)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHH
Confidence 456799999999999643
No 199
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=50.22 E-value=3.9 Score=36.03 Aligned_cols=16 Identities=25% Similarity=0.480 Sum_probs=13.5
Q ss_pred EEEeeCCCCCCcccee
Q 047385 81 TVITYGQTGAGKTFSM 96 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm 96 (483)
.|.-.|++|||||+.+
T Consensus 11 ~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIA 26 (191)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5667899999999875
No 200
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=50.08 E-value=3.8 Score=39.85 Aligned_cols=24 Identities=25% Similarity=0.451 Sum_probs=16.7
Q ss_pred HhhcCcceEEEeeCCCCCCcccee
Q 047385 73 DAFNGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 73 ~~l~G~n~ti~ayG~tgSGKT~Tm 96 (483)
.+++|++..|...|++|+|||..|
T Consensus 12 ~~l~~~~~~I~lvG~nG~GKSTLl 35 (301)
T 2qnr_A 12 SVKKGFEFTLMVVGESGLGKSTLI 35 (301)
T ss_dssp ------CEEEEEEEETTSSHHHHH
T ss_pred EEEcCCCEEEEEECCCCCCHHHHH
Confidence 357899999999999999999876
No 201
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=50.04 E-value=23 Score=25.83 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 047385 420 DLVRAVEELKSENKALKTRIAAAG 443 (483)
Q Consensus 420 ~l~~~~~~~~~e~~~l~~~~~~~~ 443 (483)
+|..+...++.+|..|+.++..|+
T Consensus 26 ~Le~~~~~L~~~n~~L~~~i~~L~ 49 (61)
T 1t2k_D 26 SLEKKAEDLSSLNGQLQSEVTLLR 49 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444433
No 202
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=49.78 E-value=5.3 Score=35.01 Aligned_cols=15 Identities=40% Similarity=0.507 Sum_probs=12.9
Q ss_pred EEEeeCCCCCCccce
Q 047385 81 TVITYGQTGAGKTFS 95 (483)
Q Consensus 81 ti~ayG~tgSGKT~T 95 (483)
.|+..|.+|||||+.
T Consensus 7 ~i~l~G~~GsGKst~ 21 (185)
T 3trf_A 7 NIYLIGLMGAGKTSV 21 (185)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 577899999999875
No 203
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=49.58 E-value=23 Score=26.04 Aligned_cols=27 Identities=33% Similarity=0.417 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 047385 418 VEDLVRAVEELKSENKALKTRIAAAGK 444 (483)
Q Consensus 418 ~~~l~~~~~~~~~e~~~l~~~~~~~~~ 444 (483)
+.+|......++.+|..|+.++..|+.
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~ 51 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLK 51 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555544443
No 204
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=49.53 E-value=4 Score=38.16 Aligned_cols=19 Identities=26% Similarity=0.078 Sum_probs=16.3
Q ss_pred eEEEeeCCCCCCccceecC
Q 047385 80 GTVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 80 ~ti~ayG~tgSGKT~Tm~G 98 (483)
..++-||++|||||..+.+
T Consensus 13 ~i~litG~mGsGKTT~ll~ 31 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIR 31 (223)
T ss_dssp EEEEEECSTTSCHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHH
Confidence 4677899999999998866
No 205
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=49.39 E-value=7.8 Score=40.99 Aligned_cols=26 Identities=35% Similarity=0.577 Sum_probs=18.5
Q ss_pred HHHHhhcCcceEEEeeCCCCCCccce
Q 047385 70 IIRDAFNGMNGTVITYGQTGAGKTFS 95 (483)
Q Consensus 70 lv~~~l~G~n~ti~ayG~tgSGKT~T 95 (483)
++..++.|-+--+++.++||||||.+
T Consensus 51 ~i~~il~~~~~dvlv~apTGsGKTl~ 76 (579)
T 3sqw_A 51 TIKPILSSEDHDVIARAKTGTGKTFA 76 (579)
T ss_dssp HHHHHHCSSSEEEEEECCTTSCHHHH
T ss_pred HHHHHHccCCCeEEEEcCCCcHHHHH
Confidence 34455544445567889999999986
No 206
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=49.09 E-value=59 Score=23.53 Aligned_cols=33 Identities=30% Similarity=0.356 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047385 410 TITSLQHMVEDLVRAVEELKSENKALKTRIAAA 442 (483)
Q Consensus 410 ~~~~~~~~~~~l~~~~~~~~~e~~~l~~~~~~~ 442 (483)
.+.++++.++.|.....+|..+...|+.++..|
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~L 55 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQL 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555556555556666666665555554
No 207
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=49.05 E-value=8 Score=42.05 Aligned_cols=46 Identities=28% Similarity=0.359 Sum_probs=31.2
Q ss_pred EeecEEecCCCchHHHHHHHHHHHHHHhhcCcceEEEeeCCCCCCccceecC
Q 047385 47 FGFDRVFYEKSEQAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 47 F~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm~G 98 (483)
|.|.. |.|...|..-+... ++.+-.|... ....|.||||||++|..
T Consensus 2 ~~~~~-~~~~~~q~~ai~~l----~~~~~~~~~~-~~l~g~tgs~kt~~~a~ 47 (664)
T 1c4o_A 2 FRYRG-PSPKGDQPKAIAGL----VEALRDGERF-VTLLGATGTGKTVTMAK 47 (664)
T ss_dssp CCCCS-CCCCTTHHHHHHHH----HHHHHTTCSE-EEEEECTTSCHHHHHHH
T ss_pred CCCCC-CCCCCCChHHHHHH----HHHHhcCCCc-EEEEcCCCcHHHHHHHH
Confidence 34443 37888888777664 4444566533 34579999999999964
No 208
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=49.01 E-value=22 Score=28.16 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Q 047385 421 LVRAVEELKSENKALKTRIAAAGK 444 (483)
Q Consensus 421 l~~~~~~~~~e~~~l~~~~~~~~~ 444 (483)
+.....+|+.||..|+.++++|..
T Consensus 41 ~~~r~~~Le~EN~~Lr~~v~~L~~ 64 (87)
T 1hjb_A 41 TQHKVLELTAENERLQKKVEQLSR 64 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444433
No 209
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=49.01 E-value=4.2 Score=40.82 Aligned_cols=20 Identities=30% Similarity=0.516 Sum_probs=15.2
Q ss_pred cCcceEEEeeCCCCCCccceec
Q 047385 76 NGMNGTVITYGQTGAGKTFSME 97 (483)
Q Consensus 76 ~G~n~ti~ayG~tgSGKT~Tm~ 97 (483)
.+.| ++..|++|||||+++.
T Consensus 34 ~~~~--~~i~G~~G~GKs~~~~ 53 (392)
T 4ag6_A 34 TNSN--WTILAKPGAGKSFTAK 53 (392)
T ss_dssp CCCC--EEEECCTTSSHHHHHH
T ss_pred ccCc--eEEEcCCCCCHHHHHH
Confidence 4445 4568999999999873
No 210
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=48.98 E-value=6.8 Score=42.25 Aligned_cols=25 Identities=36% Similarity=0.412 Sum_probs=18.2
Q ss_pred HHHhhcCcceEEEeeCCCCCCccceec
Q 047385 71 IRDAFNGMNGTVITYGQTGAGKTFSME 97 (483)
Q Consensus 71 v~~~l~G~n~ti~ayG~tgSGKT~Tm~ 97 (483)
+..+++|.+ ++..++||||||.+..
T Consensus 16 i~~il~g~~--~ll~~~TGsGKTl~~~ 40 (699)
T 4gl2_A 16 AQPALEGKN--IIICLPTGCGKTRVAV 40 (699)
T ss_dssp HHHHHSSCC--EEECCCTTSCHHHHHH
T ss_pred HHHHHhCCC--EEEEcCCCCcHHHHHH
Confidence 344556776 4678999999998753
No 211
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=48.94 E-value=22 Score=27.53 Aligned_cols=29 Identities=21% Similarity=0.257 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCchh
Q 047385 419 EDLVRAVEELKSENKALKTRIAAAGKIDA 447 (483)
Q Consensus 419 ~~l~~~~~~~~~e~~~l~~~~~~~~~~~~ 447 (483)
.++.....+|+.||..|+.++++|..+..
T Consensus 39 ~e~~~r~~~L~~eN~~L~~~v~~L~~E~~ 67 (78)
T 1gu4_A 39 LETQHKVLELTAENERLQKKVEQLSRELS 67 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666777777777666655443
No 212
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=48.87 E-value=4.4 Score=36.18 Aligned_cols=15 Identities=40% Similarity=0.651 Sum_probs=12.6
Q ss_pred EEeeCCCCCCcccee
Q 047385 82 VITYGQTGAGKTFSM 96 (483)
Q Consensus 82 i~ayG~tgSGKT~Tm 96 (483)
+.-.|++|||||+.+
T Consensus 3 i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 3 IIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 455899999999886
No 213
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=48.78 E-value=4.6 Score=38.67 Aligned_cols=19 Identities=26% Similarity=0.499 Sum_probs=15.3
Q ss_pred cceEEEeeCCCCCCcccee
Q 047385 78 MNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 78 ~n~ti~ayG~tgSGKT~Tm 96 (483)
|+-++...|++|+|||..|
T Consensus 1 f~f~v~lvG~nGaGKSTLl 19 (270)
T 3sop_A 1 FDFNIMVVGQSGLGKSTLV 19 (270)
T ss_dssp CEEEEEEEESSSSSHHHHH
T ss_pred CeeEEEEECCCCCCHHHHH
Confidence 3456778899999999875
No 214
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=48.55 E-value=20 Score=26.29 Aligned_cols=27 Identities=22% Similarity=0.315 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 047385 418 VEDLVRAVEELKSENKALKTRIAAAGK 444 (483)
Q Consensus 418 ~~~l~~~~~~~~~e~~~l~~~~~~~~~ 444 (483)
+.+|..++..++.+|..|+.++..|..
T Consensus 24 ~~~Le~~v~~L~~~n~~L~~~v~~L~~ 50 (62)
T 1jnm_A 24 IARLEEKVKTLKAQNSELASTANMLRE 50 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444555555555444443
No 215
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=48.31 E-value=26 Score=22.55 Aligned_cols=26 Identities=12% Similarity=0.258 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047385 412 TSLQHMVEDLVRAVEELKSENKALKT 437 (483)
Q Consensus 412 ~~~~~~~~~l~~~~~~~~~e~~~l~~ 437 (483)
.+++..+++|-.+..+++.|..+||.
T Consensus 4 nQLEdKvEeLl~~~~~L~~EV~RLk~ 29 (34)
T 2bni_A 4 KQIEDKLEEILSKGHHICNELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 34555566666666666666666654
No 216
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=48.02 E-value=32 Score=25.04 Aligned_cols=26 Identities=31% Similarity=0.505 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047385 412 TSLQHMVEDLVRAVEELKSENKALKT 437 (483)
Q Consensus 412 ~~~~~~~~~l~~~~~~~~~e~~~l~~ 437 (483)
..+.+++.-++++++.++.||..||.
T Consensus 37 ~~ls~Elr~mQ~~lq~LQsen~~Lr~ 62 (63)
T 2w6a_A 37 SSLSDELRKLQREIHKLQAENLQLRQ 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence 45667788889999999999988873
No 217
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=47.95 E-value=3.8 Score=36.80 Aligned_cols=18 Identities=22% Similarity=0.241 Sum_probs=15.3
Q ss_pred EEEeeCCCCCCccceecC
Q 047385 81 TVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm~G 98 (483)
.++-||+.|||||+.+.+
T Consensus 5 i~vi~G~~gsGKTT~ll~ 22 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLS 22 (184)
T ss_dssp EEEEEESTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467799999999999765
No 218
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=47.86 E-value=7.7 Score=43.09 Aligned_cols=39 Identities=18% Similarity=0.195 Sum_probs=26.4
Q ss_pred cCCCchHHHHHHHHHHHHHHhhcCcceEEEeeCCCCCCcccee
Q 047385 54 YEKSEQAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 54 ~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm 96 (483)
.+..-|.+++..+. .+.-.|....++..|+||||||...
T Consensus 368 ~lt~~Q~~ai~~I~----~~l~~~~~~~~Ll~a~TGSGKTlva 406 (780)
T 1gm5_A 368 KLTNAQKRAHQEIR----NDMISEKPMNRLLQGDVGSGKTVVA 406 (780)
T ss_dssp CCCHHHHHHHHHHH----HHHHSSSCCCCEEECCSSSSHHHHH
T ss_pred CCCHHHHHHHHHHH----hhccccCCCcEEEEcCCCCCHHHHH
Confidence 45556776666544 3334555456788999999999875
No 219
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=47.83 E-value=5 Score=35.72 Aligned_cols=16 Identities=25% Similarity=0.420 Sum_probs=13.0
Q ss_pred EEEeeCCCCCCcccee
Q 047385 81 TVITYGQTGAGKTFSM 96 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm 96 (483)
.|.-.|++|||||+.+
T Consensus 8 ~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVR 23 (207)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4566899999999764
No 220
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=47.81 E-value=5.5 Score=34.84 Aligned_cols=16 Identities=31% Similarity=0.441 Sum_probs=13.5
Q ss_pred EEEeeCCCCCCcccee
Q 047385 81 TVITYGQTGAGKTFSM 96 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm 96 (483)
.|+..|.+|||||+..
T Consensus 13 ~i~i~G~~GsGKst~~ 28 (180)
T 3iij_A 13 NILLTGTPGVGKTTLG 28 (180)
T ss_dssp CEEEECSTTSSHHHHH
T ss_pred eEEEEeCCCCCHHHHH
Confidence 4778999999999864
No 221
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=47.79 E-value=44 Score=30.22 Aligned_cols=38 Identities=16% Similarity=0.105 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchh
Q 047385 410 TITSLQHMVEDLVRAVEELKSENKALKTRIAAAGKIDA 447 (483)
Q Consensus 410 ~~~~~~~~~~~l~~~~~~~~~e~~~l~~~~~~~~~~~~ 447 (483)
.+.+|+++...|..+++....|++.|+++++.+.....
T Consensus 21 LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~ 58 (190)
T 4emc_A 21 LVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVK 58 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 45667777777777888888888888888777765543
No 222
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=47.49 E-value=7.6 Score=43.28 Aligned_cols=52 Identities=27% Similarity=0.457 Sum_probs=35.5
Q ss_pred eeEeecEEecCCCchHHHHHHHHHHHHH-HhhcC----cceEEEeeCCCCCCcccee
Q 047385 45 FKFGFDRVFYEKSEQAEVFEFLALPIIR-DAFNG----MNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 45 ~~F~FD~Vf~~~~~Q~~vf~~~~~plv~-~~l~G----~n~ti~ayG~tgSGKT~Tm 96 (483)
..++||.|.+.+..-+.+.+.+..|+.. .++.. ....|+-||++|+|||+.+
T Consensus 199 ~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 199 NEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp SSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 3478888888777666777666655542 22222 2235888999999999865
No 223
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=47.43 E-value=26 Score=22.82 Aligned_cols=29 Identities=28% Similarity=0.288 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047385 412 TSLQHMVEDLVRAVEELKSENKALKTRIA 440 (483)
Q Consensus 412 ~~~~~~~~~l~~~~~~~~~e~~~l~~~~~ 440 (483)
.+|+..+++|-....+++.|..+|+.-+.
T Consensus 4 nQLE~kVEeLl~~~~~Le~EV~RL~~ll~ 32 (36)
T 1kd8_A 4 KQLEAEVEEIESEVWHLENEVARLEKENA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 34556667777777777777777766543
No 224
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=47.30 E-value=5.2 Score=35.31 Aligned_cols=16 Identities=31% Similarity=0.470 Sum_probs=13.2
Q ss_pred EEEeeCCCCCCcccee
Q 047385 81 TVITYGQTGAGKTFSM 96 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm 96 (483)
.+.-.|++|||||+++
T Consensus 4 ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 4566899999999875
No 225
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=47.24 E-value=5.7 Score=38.82 Aligned_cols=17 Identities=35% Similarity=0.599 Sum_probs=13.9
Q ss_pred eEEEeeCCCCCCcccee
Q 047385 80 GTVITYGQTGAGKTFSM 96 (483)
Q Consensus 80 ~ti~ayG~tgSGKT~Tm 96 (483)
..|.-.|++|||||+++
T Consensus 103 ~vi~lvG~nGsGKTTll 119 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTI 119 (304)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 35566799999999987
No 226
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=47.06 E-value=60 Score=23.61 Aligned_cols=37 Identities=27% Similarity=0.365 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 047385 408 LQTITSLQHMVEDLVRAVEELKSENKALKTRIAAAGK 444 (483)
Q Consensus 408 ~~~~~~~~~~~~~l~~~~~~~~~e~~~l~~~~~~~~~ 444 (483)
.+.+.+|+..++.|.....+|..+...|+.++..|..
T Consensus 21 k~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~ 57 (62)
T 1jnm_A 21 LERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQ 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677778888888888888888888888777654
No 227
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=46.92 E-value=11 Score=36.48 Aligned_cols=36 Identities=28% Similarity=0.229 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHhh--cCcceEEEeeCCCCCCcccee
Q 047385 61 EVFEFLALPIIRDAF--NGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 61 ~vf~~~~~plv~~~l--~G~n~ti~ayG~tgSGKT~Tm 96 (483)
++++.++.-+..... .+....|.-.|++|||||+..
T Consensus 11 ~~~~~l~~~i~~~~~~~~~~~~ii~I~G~sGsGKSTla 48 (290)
T 1odf_A 11 YTIEFLDKYIPEWFETGNKCPLFIFFSGPQGSGKSFTS 48 (290)
T ss_dssp HHHHHHHHHHHHHHTTTCCSCEEEEEECCTTSSHHHHH
T ss_pred HHHHHHHHHHHHhhhccCCCCeEEEEECCCCCCHHHHH
Confidence 355554433333211 233445667799999999875
No 228
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=46.55 E-value=29 Score=22.31 Aligned_cols=26 Identities=27% Similarity=0.262 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047385 412 TSLQHMVEDLVRAVEELKSENKALKT 437 (483)
Q Consensus 412 ~~~~~~~~~l~~~~~~~~~e~~~l~~ 437 (483)
.+|+..+|+|-....+++.|..+|+.
T Consensus 4 nQLEdkVEeLl~~~~~Le~eV~RL~~ 29 (34)
T 2hy6_A 4 KQLADAVEELASANYHLANAVARLAK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34555566666666666666666654
No 229
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=46.41 E-value=19 Score=38.98 Aligned_cols=91 Identities=20% Similarity=0.267 Sum_probs=52.9
Q ss_pred eEeecEEecCCCchHHHHHHHHHHHHHHhhcCcceEEEeeCCCCCCccceecCCCCCCccccccCchh----hhHHHHHH
Q 047385 46 KFGFDRVFYEKSEQAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSMEGPSILACDEQKKGLLQ----RTVDELFD 121 (483)
Q Consensus 46 ~F~FD~Vf~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giip----r~~~~LF~ 121 (483)
.|....-|.|...|..-++.. ++.+-.|... ....|.|||||||+|..--.. ...+-|+- ..+..|++
T Consensus 4 ~~~~~~~~~p~~~Q~~~i~~l----~~~~~~~~~~-~~l~g~~gs~k~~~~a~~~~~---~~~~~lvv~~~~~~A~~l~~ 75 (661)
T 2d7d_A 4 RFELVSKYQPQGDQPKAIEKL----VKGIQEGKKH-QTLLGATGTGKTFTVSNLIKE---VNKPTLVIAHNKTLAGQLYS 75 (661)
T ss_dssp CCCCCCSCCCCTTHHHHHHHH----HHHHHTTCSE-EEEEECTTSCHHHHHHHHHHH---HCCCEEEECSSHHHHHHHHH
T ss_pred cceeecCCCCCCCCHHHHHHH----HHHHhcCCCc-EEEECcCCcHHHHHHHHHHHH---hCCCEEEEECCHHHHHHHHH
Confidence 366666788999998887764 4444566432 345699999999999641100 00111111 23445555
Q ss_pred hhhcCCCCcEEEEEEeEEEEecc
Q 047385 122 CMKSSDASVKFTIKLSMVEIYME 144 (483)
Q Consensus 122 ~i~~~~~~~~~~v~vS~~EIyne 144 (483)
.+..--+...+....||+.-|.-
T Consensus 76 el~~~~~~~~v~~fps~yd~~~p 98 (661)
T 2d7d_A 76 EFKEFFPNNAVEYFVSYYDYYQP 98 (661)
T ss_dssp HHHHHCTTSEEEEECCCEEEEEC
T ss_pred HHHHHcCCCcEEEccccccccCc
Confidence 55544333466677777666653
No 230
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=46.41 E-value=5.4 Score=42.63 Aligned_cols=20 Identities=20% Similarity=0.338 Sum_probs=16.6
Q ss_pred cceEEEeeCCCCCCccceec
Q 047385 78 MNGTVITYGQTGAGKTFSME 97 (483)
Q Consensus 78 ~n~ti~ayG~tgSGKT~Tm~ 97 (483)
.++.++..|..|||||+|+.
T Consensus 21 ~~~~~lV~a~aGsGKT~~l~ 40 (647)
T 3lfu_A 21 PRSNLLVLAGAGSGKTRVLV 40 (647)
T ss_dssp CSSCEEEEECTTSCHHHHHH
T ss_pred CCCCEEEEECCCCCHHHHHH
Confidence 35567889999999999985
No 231
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=46.39 E-value=5.4 Score=36.58 Aligned_cols=17 Identities=47% Similarity=0.538 Sum_probs=13.9
Q ss_pred EEEeeCCCCCCccceec
Q 047385 81 TVITYGQTGAGKTFSME 97 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm~ 97 (483)
.+.-.|++|||||+.+.
T Consensus 32 ~~~l~GpnGsGKSTLl~ 48 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAA 48 (251)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEEeCCCCCHHHHHH
Confidence 45568999999999874
No 232
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=46.10 E-value=6.8 Score=40.24 Aligned_cols=24 Identities=33% Similarity=0.231 Sum_probs=18.8
Q ss_pred HHHhhcCcceEEEeeCCCCCCccce
Q 047385 71 IRDAFNGMNGTVITYGQTGAGKTFS 95 (483)
Q Consensus 71 v~~~l~G~n~ti~ayG~tgSGKT~T 95 (483)
+..+++|.+. ++..|+||||||..
T Consensus 12 i~~~l~~~~~-~lv~a~TGsGKT~~ 35 (451)
T 2jlq_A 12 DEDIFRKKRL-TIMDLHPGAGKTKR 35 (451)
T ss_dssp CGGGGSTTCE-EEECCCTTSSCCTT
T ss_pred HHHHHhcCCe-EEEECCCCCCHhhH
Confidence 4566778764 56789999999986
No 233
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=46.05 E-value=9.8 Score=41.72 Aligned_cols=29 Identities=28% Similarity=0.368 Sum_probs=19.9
Q ss_pred HHHHhhcCcceEEEeeCCCCCCccceecC
Q 047385 70 IIRDAFNGMNGTVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 70 lv~~~l~G~n~ti~ayG~tgSGKT~Tm~G 98 (483)
+++.+.......++-||++|+|||+...+
T Consensus 198 l~~~l~~~~~~~vlL~G~~GtGKT~la~~ 226 (758)
T 1r6b_X 198 AIQVLCRRRKNNPLLVGESGVGKTAIAEG 226 (758)
T ss_dssp HHHHHTSSSSCEEEEECCTTSSHHHHHHH
T ss_pred HHHHHhccCCCCeEEEcCCCCCHHHHHHH
Confidence 33333344455577899999999998644
No 234
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=46.02 E-value=6.2 Score=36.23 Aligned_cols=16 Identities=25% Similarity=0.383 Sum_probs=8.9
Q ss_pred EEEeeCCCCCCcccee
Q 047385 81 TVITYGQTGAGKTFSM 96 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm 96 (483)
.|.-.|++|||||.++
T Consensus 29 ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVA 44 (231)
T ss_dssp EEEEECSCC----CHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3455799999999875
No 235
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=45.70 E-value=13 Score=40.94 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=18.5
Q ss_pred hhcCcceEEEeeCCCCCCccceecC
Q 047385 74 AFNGMNGTVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 74 ~l~G~n~ti~ayG~tgSGKT~Tm~G 98 (483)
+..+....++-||++|+|||...-+
T Consensus 196 l~~~~~~~vLL~G~pGtGKT~la~~ 220 (758)
T 3pxi_A 196 LSRRTKNNPVLIGEPGVGKTAIAEG 220 (758)
T ss_dssp HHCSSSCEEEEESCTTTTTHHHHHH
T ss_pred HhCCCCCCeEEECCCCCCHHHHHHH
Confidence 3345555678899999999987644
No 236
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=45.55 E-value=7.8 Score=34.71 Aligned_cols=18 Identities=22% Similarity=0.340 Sum_probs=14.2
Q ss_pred ceEEEeeCCCCCCcccee
Q 047385 79 NGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 79 n~ti~ayG~tgSGKT~Tm 96 (483)
...|...|++|||||+.+
T Consensus 25 g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp CEEEEEECSTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 445677899999999764
No 237
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=45.52 E-value=6.9 Score=33.50 Aligned_cols=16 Identities=19% Similarity=0.050 Sum_probs=13.1
Q ss_pred EEEeeCCCCCCcccee
Q 047385 81 TVITYGQTGAGKTFSM 96 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm 96 (483)
.|+-.|..|||||+..
T Consensus 3 ~i~l~G~~GsGKsT~~ 18 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVA 18 (173)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4677899999998763
No 238
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=45.48 E-value=64 Score=25.18 Aligned_cols=28 Identities=25% Similarity=0.330 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047385 413 SLQHMVEDLVRAVEELKSENKALKTRIA 440 (483)
Q Consensus 413 ~~~~~~~~l~~~~~~~~~e~~~l~~~~~ 440 (483)
.|...++.++..+..++.+|+.|+.-++
T Consensus 42 ~Lh~~ie~~~eEi~~Lk~en~~L~elA~ 69 (83)
T 1wlq_A 42 KLHKEIEQKDSEIARLRKENKDLAEVAE 69 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555554333
No 239
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=45.47 E-value=10 Score=39.73 Aligned_cols=24 Identities=25% Similarity=0.409 Sum_probs=17.5
Q ss_pred HHhhcCcceEEEeeCCCCCCccceec
Q 047385 72 RDAFNGMNGTVITYGQTGAGKTFSME 97 (483)
Q Consensus 72 ~~~l~G~n~ti~ayG~tgSGKT~Tm~ 97 (483)
..+..|. .|+-||++|+|||+..-
T Consensus 36 ~al~~~~--~VLL~GpPGtGKT~LAr 59 (500)
T 3nbx_X 36 LAALSGE--SVFLLGPPGIAKSLIAR 59 (500)
T ss_dssp HHHHHTC--EEEEECCSSSSHHHHHH
T ss_pred HHHhcCC--eeEeecCchHHHHHHHH
Confidence 3344454 56779999999999864
No 240
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=45.40 E-value=5.4 Score=37.50 Aligned_cols=19 Identities=32% Similarity=0.368 Sum_probs=16.8
Q ss_pred eEEEeeCCCCCCccceecC
Q 047385 80 GTVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 80 ~ti~ayG~tgSGKT~Tm~G 98 (483)
..||..|..|+||||+|..
T Consensus 7 l~I~~~~kgGvGKTt~a~~ 25 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQ 25 (228)
T ss_dssp EEEEEESSTTSSHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHH
Confidence 5689999999999999865
No 241
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=45.39 E-value=62 Score=22.58 Aligned_cols=36 Identities=14% Similarity=0.170 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 047385 408 LQTITSLQHMVEDLVRAVEELKSENKALKTRIAAAG 443 (483)
Q Consensus 408 ~~~~~~~~~~~~~l~~~~~~~~~e~~~l~~~~~~~~ 443 (483)
.+.+..|.+....|-.++.+++..+..+.+++..+.
T Consensus 3 eq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~ 38 (48)
T 3vmx_A 3 ERQILRLKQINIQLATKIQHLEFSCSEKEQEIERLN 38 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 345666667777777777777777777766666554
No 242
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=45.32 E-value=12 Score=41.11 Aligned_cols=37 Identities=38% Similarity=0.475 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHHHHhhcCcc------eEEEeeCCCCCCcccee
Q 047385 59 QAEVFEFLALPIIRDAFNGMN------GTVITYGQTGAGKTFSM 96 (483)
Q Consensus 59 Q~~vf~~~~~plv~~~l~G~n------~ti~ayG~tgSGKT~Tm 96 (483)
|.+..+.+. ..+.....|.. +.++-||++|+|||++.
T Consensus 496 q~~a~~~l~-~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA 538 (758)
T 3pxi_A 496 QDEAVVAVA-KAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELA 538 (758)
T ss_dssp CHHHHHHHH-HHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHH
T ss_pred hHHHHHHHH-HHHHHHHcccCCCCCCceEEEEECCCCCCHHHHH
Confidence 444444433 33344444443 26888999999999875
No 243
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=45.25 E-value=5.9 Score=35.82 Aligned_cols=16 Identities=25% Similarity=0.449 Sum_probs=12.6
Q ss_pred EEEeeCCCCCCcccee
Q 047385 81 TVITYGQTGAGKTFSM 96 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm 96 (483)
.+.-.|++|||||.++
T Consensus 22 i~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVV 37 (207)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3445799999999876
No 244
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=45.05 E-value=7.9 Score=38.68 Aligned_cols=25 Identities=20% Similarity=0.101 Sum_probs=17.7
Q ss_pred HHHhhcCcceEEEeeCCCCCCccceecC
Q 047385 71 IRDAFNGMNGTVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 71 v~~~l~G~n~ti~ayG~tgSGKT~Tm~G 98 (483)
+..++.| .++..++||+|||.+..-
T Consensus 18 i~~~~~~---~~ll~~~tG~GKT~~~~~ 42 (494)
T 1wp9_A 18 YAKCKET---NCLIVLPTGLGKTLIAMM 42 (494)
T ss_dssp HHHGGGS---CEEEECCTTSCHHHHHHH
T ss_pred HHHHhhC---CEEEEcCCCCCHHHHHHH
Confidence 3455667 345678999999988643
No 245
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=44.44 E-value=9.7 Score=36.93 Aligned_cols=18 Identities=39% Similarity=0.735 Sum_probs=14.5
Q ss_pred EEEeeCCCCCCccceecC
Q 047385 81 TVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm~G 98 (483)
.|...|++|+|||+|+..
T Consensus 107 vi~lvG~~GsGKTTl~~~ 124 (296)
T 2px0_A 107 YIVLFGSTGAGKTTTLAK 124 (296)
T ss_dssp EEEEEESTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 566679999999999743
No 246
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=44.33 E-value=4.8 Score=40.94 Aligned_cols=18 Identities=28% Similarity=0.541 Sum_probs=15.4
Q ss_pred ceEEEeeCCCCCCcccee
Q 047385 79 NGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 79 n~ti~ayG~tgSGKT~Tm 96 (483)
+.-++..|+||||||.++
T Consensus 53 ~~h~~i~G~tGsGKs~~~ 70 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLL 70 (437)
T ss_dssp GGCEEEEECTTSSHHHHH
T ss_pred cceEEEECCCCCCHHHHH
Confidence 456788999999999986
No 247
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=44.32 E-value=7.4 Score=41.56 Aligned_cols=19 Identities=26% Similarity=0.450 Sum_probs=15.4
Q ss_pred eEEEeeCCCCCCccceecC
Q 047385 80 GTVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 80 ~ti~ayG~tgSGKT~Tm~G 98 (483)
..++..|+.|||||+++..
T Consensus 205 ~~~~I~G~pGTGKTt~i~~ 223 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKA 223 (574)
T ss_dssp SEEEEECCTTSCHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHH
Confidence 4566799999999998744
No 248
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=44.32 E-value=6 Score=38.60 Aligned_cols=16 Identities=38% Similarity=0.661 Sum_probs=13.9
Q ss_pred EEEeeCCCCCCcccee
Q 047385 81 TVITYGQTGAGKTFSM 96 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm 96 (483)
.+.-.|++|||||+++
T Consensus 102 vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 102 VIMIVGVNGGGKTTSL 117 (302)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5667899999999987
No 249
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=44.32 E-value=7.4 Score=33.99 Aligned_cols=15 Identities=40% Similarity=0.572 Sum_probs=13.0
Q ss_pred EEEeeCCCCCCccce
Q 047385 81 TVITYGQTGAGKTFS 95 (483)
Q Consensus 81 ti~ayG~tgSGKT~T 95 (483)
.|+-.|++|||||+.
T Consensus 5 ~I~i~G~~GsGKsT~ 19 (192)
T 1kht_A 5 VVVVTGVPGVGSTTS 19 (192)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 577899999999875
No 250
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=44.23 E-value=10 Score=40.81 Aligned_cols=23 Identities=43% Similarity=0.573 Sum_probs=17.0
Q ss_pred HHhhcCcceEEEeeCCCCCCcccee
Q 047385 72 RDAFNGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 72 ~~~l~G~n~ti~ayG~tgSGKT~Tm 96 (483)
..++.|.|+ +..++||||||...
T Consensus 23 ~~~l~g~~~--iv~~~TGsGKTl~~ 45 (696)
T 2ykg_A 23 LPAMKGKNT--IICAPTGCGKTFVS 45 (696)
T ss_dssp HHHHTTCCE--EEECCTTSSHHHHH
T ss_pred HHHHcCCCE--EEEcCCCchHHHHH
Confidence 334568774 66889999999853
No 251
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=44.22 E-value=12 Score=39.23 Aligned_cols=16 Identities=31% Similarity=0.638 Sum_probs=13.8
Q ss_pred EEEeeCCCCCCcccee
Q 047385 81 TVITYGQTGAGKTFSM 96 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm 96 (483)
.|.-.|++|||||+++
T Consensus 295 VI~LVGpNGSGKTTLl 310 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTI 310 (503)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCcccHHHHH
Confidence 5667799999999987
No 252
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=44.10 E-value=33 Score=22.07 Aligned_cols=26 Identities=12% Similarity=0.270 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047385 412 TSLQHMVEDLVRAVEELKSENKALKT 437 (483)
Q Consensus 412 ~~~~~~~~~l~~~~~~~~~e~~~l~~ 437 (483)
.+++..+|+|-.+..+++.|..+||.
T Consensus 4 ~QLEdKVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 4 KQIEDKGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34555666666666666666666654
No 253
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=44.08 E-value=6.8 Score=33.83 Aligned_cols=16 Identities=31% Similarity=0.434 Sum_probs=13.3
Q ss_pred EEEeeCCCCCCcccee
Q 047385 81 TVITYGQTGAGKTFSM 96 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm 96 (483)
.|.-.|++|||||+..
T Consensus 6 ~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4677999999998764
No 254
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=43.85 E-value=7.3 Score=34.86 Aligned_cols=16 Identities=38% Similarity=0.387 Sum_probs=13.4
Q ss_pred EEEeeCCCCCCcccee
Q 047385 81 TVITYGQTGAGKTFSM 96 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm 96 (483)
.|+-.|++|||||+..
T Consensus 27 ~i~l~G~~GsGKsTl~ 42 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLG 42 (199)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5777899999998763
No 255
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=43.55 E-value=60 Score=23.82 Aligned_cols=24 Identities=29% Similarity=0.308 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 047385 414 LQHMVEDLVRAVEELKSENKALKT 437 (483)
Q Consensus 414 ~~~~~~~l~~~~~~~~~e~~~l~~ 437 (483)
|++...+|...+..++.|+..|+.
T Consensus 35 L~~~N~~L~~~i~~L~~E~~~Lk~ 58 (63)
T 1ci6_A 35 LEKKNEALKERADSLAKEIQYLKD 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444443
No 256
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=43.52 E-value=7.4 Score=36.64 Aligned_cols=15 Identities=40% Similarity=0.470 Sum_probs=12.7
Q ss_pred EEEeeCCCCCCccce
Q 047385 81 TVITYGQTGAGKTFS 95 (483)
Q Consensus 81 ti~ayG~tgSGKT~T 95 (483)
.|+..|++|||||..
T Consensus 3 li~I~G~~GSGKSTl 17 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDM 17 (253)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCcCHHHH
Confidence 467899999999875
No 257
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=43.43 E-value=1.4e+02 Score=24.74 Aligned_cols=30 Identities=47% Similarity=0.676 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047385 411 ITSLQHMVEDLVRAVEELKSENKALKTRIA 440 (483)
Q Consensus 411 ~~~~~~~~~~l~~~~~~~~~e~~~l~~~~~ 440 (483)
|..|.+.+.+...+++++..+++.|..++.
T Consensus 80 I~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~ 109 (121)
T 3mq7_A 80 ITTLNHKLQDASAEVERLRRENQVLSVRIA 109 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhhchhhhhHhh
Confidence 334444444444445555555544444443
No 258
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=43.40 E-value=8.8 Score=42.76 Aligned_cols=18 Identities=28% Similarity=0.433 Sum_probs=14.9
Q ss_pred EEEeeCCCCCCccceecC
Q 047385 81 TVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm~G 98 (483)
.++..|+.|||||+|+..
T Consensus 377 ~~lI~GppGTGKT~~i~~ 394 (802)
T 2xzl_A 377 LSLIQGPPGTGKTVTSAT 394 (802)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHH
Confidence 457799999999999753
No 259
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=43.17 E-value=5.9 Score=36.36 Aligned_cols=15 Identities=27% Similarity=0.563 Sum_probs=12.2
Q ss_pred EEeeCCCCCCcccee
Q 047385 82 VITYGQTGAGKTFSM 96 (483)
Q Consensus 82 i~ayG~tgSGKT~Tm 96 (483)
+.-.|++|||||+.+
T Consensus 26 ~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 26 LVICGPSGVGKGTLI 40 (218)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 345799999999876
No 260
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=43.15 E-value=5.3 Score=39.91 Aligned_cols=19 Identities=37% Similarity=0.289 Sum_probs=14.8
Q ss_pred cCcceEEEeeCCCCCCcccee
Q 047385 76 NGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 76 ~G~n~ti~ayG~tgSGKT~Tm 96 (483)
.|.+.. -.|+||||||+++
T Consensus 174 ~G~~i~--ivG~sGsGKSTll 192 (361)
T 2gza_A 174 LERVIV--VAGETGSGKTTLM 192 (361)
T ss_dssp TTCCEE--EEESSSSCHHHHH
T ss_pred cCCEEE--EECCCCCCHHHHH
Confidence 566544 4699999999986
No 261
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=43.08 E-value=85 Score=24.48 Aligned_cols=32 Identities=25% Similarity=0.265 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047385 411 ITSLQHMVEDLVRAVEELKSENKALKTRIAAA 442 (483)
Q Consensus 411 ~~~~~~~~~~l~~~~~~~~~e~~~l~~~~~~~ 442 (483)
...|.+.++.++..+..++.+|+.|+.=++..
T Consensus 48 N~~Lh~~ie~l~eEi~~lk~en~eL~elae~~ 79 (83)
T 1uii_A 48 NEKLHKEIEQKDNEIARLKKENKELAEVAEHV 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455556666666666666666666554443
No 262
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=43.02 E-value=6.9 Score=41.01 Aligned_cols=17 Identities=35% Similarity=0.618 Sum_probs=15.0
Q ss_pred eEEEeeCCCCCCcccee
Q 047385 80 GTVITYGQTGAGKTFSM 96 (483)
Q Consensus 80 ~ti~ayG~tgSGKT~Tm 96 (483)
..++-||++|+|||++.
T Consensus 78 ~~lLL~GppGtGKTtla 94 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAA 94 (516)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 47888999999999886
No 263
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=42.91 E-value=14 Score=40.57 Aligned_cols=21 Identities=43% Similarity=0.509 Sum_probs=19.3
Q ss_pred cCcceEEEeeCCCCCCcccee
Q 047385 76 NGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 76 ~G~n~ti~ayG~tgSGKT~Tm 96 (483)
.+.|-||+.-|.+|||||.+.
T Consensus 91 ~~~nQsIiisGESGAGKTe~t 111 (697)
T 1lkx_A 91 SQENQCVIISGESGAGKTEAS 111 (697)
T ss_dssp HCCCEEEEEECSTTSSHHHHH
T ss_pred cCCCcEEEecCCCCCCchhhH
Confidence 799999999999999999763
No 264
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=42.80 E-value=62 Score=33.80 Aligned_cols=14 Identities=29% Similarity=0.396 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHh
Q 047385 360 SMERILNKLRERLD 373 (483)
Q Consensus 360 ~~~~~~~~l~~~l~ 373 (483)
.+...|++||.+++
T Consensus 61 DltkrINELKnqLE 74 (562)
T 3ghg_A 61 DFTNRINKLKNSLF 74 (562)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHH
Confidence 33444555555443
No 265
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=42.61 E-value=5.3 Score=36.31 Aligned_cols=18 Identities=17% Similarity=0.170 Sum_probs=15.4
Q ss_pred EEEeeCCCCCCccceecC
Q 047385 81 TVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm~G 98 (483)
..+-||+.|||||..+.+
T Consensus 10 i~v~~G~mgsGKTT~ll~ 27 (191)
T 1xx6_A 10 VEVIVGPMYSGKSEELIR 27 (191)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 567799999999988766
No 266
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=42.48 E-value=63 Score=23.62 Aligned_cols=35 Identities=17% Similarity=0.136 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 047385 409 QTITSLQHMVEDLVRAVEELKSENKALKTRIAAAG 443 (483)
Q Consensus 409 ~~~~~~~~~~~~l~~~~~~~~~e~~~l~~~~~~~~ 443 (483)
..+.+|++.++.|......|..+...|+.++..+.
T Consensus 23 ~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk 57 (63)
T 2wt7_A 23 ELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLE 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666666666666543
No 267
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=42.43 E-value=6.9 Score=33.97 Aligned_cols=16 Identities=25% Similarity=0.449 Sum_probs=13.3
Q ss_pred EEEeeCCCCCCcccee
Q 047385 81 TVITYGQTGAGKTFSM 96 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm 96 (483)
.|.-.|+.|||||+.+
T Consensus 10 ~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVA 25 (175)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5677899999999864
No 268
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=42.22 E-value=14 Score=41.17 Aligned_cols=17 Identities=41% Similarity=0.589 Sum_probs=15.0
Q ss_pred eEEEeeCCCCCCcccee
Q 047385 80 GTVITYGQTGAGKTFSM 96 (483)
Q Consensus 80 ~ti~ayG~tgSGKT~Tm 96 (483)
..|+-||++|+|||++.
T Consensus 589 ~~vLl~Gp~GtGKT~lA 605 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELA 605 (854)
T ss_dssp EEEEEBSCSSSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 57899999999999874
No 269
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=42.16 E-value=1.1e+02 Score=23.33 Aligned_cols=34 Identities=6% Similarity=0.172 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 047385 411 ITSLQHMVEDLVRAVEELKSENKALKTRIAAAGK 444 (483)
Q Consensus 411 ~~~~~~~~~~l~~~~~~~~~e~~~l~~~~~~~~~ 444 (483)
+...+..++++...+.+...++..|+.++...+.
T Consensus 35 Lr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 35 LRQRDALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3344455666666777777777777777665543
No 270
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=42.12 E-value=15 Score=40.19 Aligned_cols=17 Identities=41% Similarity=0.569 Sum_probs=14.9
Q ss_pred eEEEeeCCCCCCcccee
Q 047385 80 GTVITYGQTGAGKTFSM 96 (483)
Q Consensus 80 ~ti~ayG~tgSGKT~Tm 96 (483)
+.++-||++|+|||++.
T Consensus 489 ~~~ll~G~~GtGKT~la 505 (758)
T 1r6b_X 489 GSFLFAGPTGVGKTEVT 505 (758)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 47889999999999875
No 271
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=41.72 E-value=23 Score=27.58 Aligned_cols=33 Identities=21% Similarity=0.467 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 047385 412 TSLQHMVEDLVRAVEELKSENKALKTRIAAAGK 444 (483)
Q Consensus 412 ~~~~~~~~~l~~~~~~~~~e~~~l~~~~~~~~~ 444 (483)
..|+..+..++..+++-+.+-.+++.++..+.+
T Consensus 23 ~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e 55 (79)
T 3cvf_A 23 AELEHQLRAMERSLEEARAERERARAEVGRAAQ 55 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666666665555443
No 272
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=41.62 E-value=11 Score=37.15 Aligned_cols=29 Identities=17% Similarity=0.250 Sum_probs=22.3
Q ss_pred HHHHHhhc-Cc--ceEEEeeCCCCCCccceec
Q 047385 69 PIIRDAFN-GM--NGTVITYGQTGAGKTFSME 97 (483)
Q Consensus 69 plv~~~l~-G~--n~ti~ayG~tgSGKT~Tm~ 97 (483)
+-+|.++. |+ ...+.-||++|||||..+.
T Consensus 109 ~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~ 140 (343)
T 1v5w_A 109 QEFDKLLGGGIESMAITEAFGEFRTGKTQLSH 140 (343)
T ss_dssp HHHHHHTTSSBCSSEEEEEECCTTCTHHHHHH
T ss_pred hhHHHHhcCCCCCCeEEEEECCCCCCHHHHHH
Confidence 56888886 44 3457789999999998764
No 273
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=41.54 E-value=9.7 Score=42.42 Aligned_cols=18 Identities=28% Similarity=0.433 Sum_probs=15.0
Q ss_pred EEEeeCCCCCCccceecC
Q 047385 81 TVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm~G 98 (483)
.++..|++|||||+|+..
T Consensus 373 ~~lI~GppGTGKT~ti~~ 390 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSAT 390 (800)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHH
Confidence 456799999999999754
No 274
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=41.14 E-value=15 Score=40.70 Aligned_cols=21 Identities=33% Similarity=0.542 Sum_probs=19.4
Q ss_pred cCcceEEEeeCCCCCCcccee
Q 047385 76 NGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 76 ~G~n~ti~ayG~tgSGKT~Tm 96 (483)
++.|-||+..|.+|||||.+.
T Consensus 169 ~~~nQsIiisGESGAGKTe~t 189 (770)
T 1w9i_A 169 DRQNQSLLITGESGAGKTENT 189 (770)
T ss_dssp HCCCEEEEEECSTTSSHHHHH
T ss_pred hcCCcEEEEecCCCCcchHHH
Confidence 699999999999999999764
No 275
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=40.98 E-value=12 Score=36.00 Aligned_cols=17 Identities=18% Similarity=0.225 Sum_probs=15.0
Q ss_pred eEEEeeCCCCCCcccee
Q 047385 80 GTVITYGQTGAGKTFSM 96 (483)
Q Consensus 80 ~ti~ayG~tgSGKT~Tm 96 (483)
..++.+|+.|+|||..+
T Consensus 32 ~~v~i~G~~G~GKT~Ll 48 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLL 48 (350)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCcCCHHHHH
Confidence 57888999999999876
No 276
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=40.80 E-value=7 Score=35.28 Aligned_cols=16 Identities=38% Similarity=0.513 Sum_probs=13.3
Q ss_pred EEEeeCCCCCCcccee
Q 047385 81 TVITYGQTGAGKTFSM 96 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm 96 (483)
.+.-.|++|||||+++
T Consensus 3 ~i~i~G~nG~GKTTll 18 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLI 18 (189)
T ss_dssp CEEEESCCSSCHHHHH
T ss_pred EEEEECCCCChHHHHH
Confidence 3556899999999986
No 277
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=40.72 E-value=12 Score=42.85 Aligned_cols=32 Identities=28% Similarity=0.189 Sum_probs=21.5
Q ss_pred cCCCchHHHHHHHHHHHHHHhhcCcceEEEeeCCCCCCccce
Q 047385 54 YEKSEQAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFS 95 (483)
Q Consensus 54 ~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~T 95 (483)
.++.-|.++. ..+++|.+ ++..|+||||||.+
T Consensus 39 ~l~~~Q~~aI--------~~il~g~~--vlv~apTGsGKTlv 70 (997)
T 4a4z_A 39 ELDTFQKEAV--------YHLEQGDS--VFVAAHTSAGKTVV 70 (997)
T ss_dssp CCCHHHHHHH--------HHHHTTCE--EEEECCTTSCSHHH
T ss_pred CCCHHHHHHH--------HHHHcCCC--EEEEECCCCcHHHH
Confidence 3455565443 44557755 67799999999954
No 278
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=40.66 E-value=8.1 Score=34.70 Aligned_cols=16 Identities=25% Similarity=0.542 Sum_probs=12.6
Q ss_pred EEEeeCCCCCCcccee
Q 047385 81 TVITYGQTGAGKTFSM 96 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm 96 (483)
.|+..|++|||||+..
T Consensus 14 ~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 14 PLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4566899999998753
No 279
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=40.61 E-value=8.1 Score=33.85 Aligned_cols=17 Identities=29% Similarity=0.393 Sum_probs=14.0
Q ss_pred eEEEeeCCCCCCcccee
Q 047385 80 GTVITYGQTGAGKTFSM 96 (483)
Q Consensus 80 ~ti~ayG~tgSGKT~Tm 96 (483)
..|+..|..|||||+..
T Consensus 6 ~~I~l~G~~GsGKST~~ 22 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLS 22 (193)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45788999999998863
No 280
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=40.55 E-value=8.9 Score=33.49 Aligned_cols=16 Identities=44% Similarity=0.569 Sum_probs=13.4
Q ss_pred EEEeeCCCCCCcccee
Q 047385 81 TVITYGQTGAGKTFSM 96 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm 96 (483)
.|+-.|..|||||+..
T Consensus 6 ~I~l~G~~GsGKST~~ 21 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQA 21 (186)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5778899999999763
No 281
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=40.47 E-value=9 Score=33.47 Aligned_cols=15 Identities=40% Similarity=0.574 Sum_probs=13.0
Q ss_pred EEEeeCCCCCCccce
Q 047385 81 TVITYGQTGAGKTFS 95 (483)
Q Consensus 81 ti~ayG~tgSGKT~T 95 (483)
.|+-.|.+|||||+.
T Consensus 5 ~I~l~G~~GsGKsT~ 19 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQ 19 (196)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 577889999999876
No 282
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=40.33 E-value=66 Score=20.93 Aligned_cols=23 Identities=35% Similarity=0.460 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 047385 414 LQHMVEDLVRAVEELKSENKALK 436 (483)
Q Consensus 414 ~~~~~~~l~~~~~~~~~e~~~l~ 436 (483)
|...++.-...|..++++|+.|+
T Consensus 12 Lhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 12 LHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHH
Confidence 33444444455555555555543
No 283
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=40.26 E-value=16 Score=40.66 Aligned_cols=21 Identities=33% Similarity=0.521 Sum_probs=19.1
Q ss_pred cCcceEEEeeCCCCCCcccee
Q 047385 76 NGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 76 ~G~n~ti~ayG~tgSGKT~Tm 96 (483)
.+.|-||+.-|.+|||||.+.
T Consensus 137 ~~~nQsIiiSGESGAGKTe~t 157 (784)
T 2v26_A 137 LKLSQSIIVSGESGAGKTENT 157 (784)
T ss_dssp HTCCEEEEEECSTTSSHHHHH
T ss_pred cCCCcEEEEcCCCCCCceehH
Confidence 699999999999999999653
No 284
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=40.09 E-value=7.1 Score=34.11 Aligned_cols=16 Identities=25% Similarity=0.268 Sum_probs=13.0
Q ss_pred EEEeeCCCCCCcccee
Q 047385 81 TVITYGQTGAGKTFSM 96 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm 96 (483)
...-+|++|||||..+
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 4456899999999865
No 285
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=40.01 E-value=88 Score=26.75 Aligned_cols=7 Identities=14% Similarity=-0.007 Sum_probs=3.0
Q ss_pred ceeeeEe
Q 047385 303 RTALLCC 309 (483)
Q Consensus 303 ~t~mI~~ 309 (483)
+..-|+|
T Consensus 17 k~Y~i~g 23 (138)
T 3hnw_A 17 KVIKLGG 23 (138)
T ss_dssp EEEEECS
T ss_pred EEEEecC
Confidence 3444444
No 286
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=40.00 E-value=1e+02 Score=24.02 Aligned_cols=35 Identities=17% Similarity=0.189 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 047385 411 ITSLQHMVEDLVRAVEELKSENKALKTRIAAAGKI 445 (483)
Q Consensus 411 ~~~~~~~~~~l~~~~~~~~~e~~~l~~~~~~~~~~ 445 (483)
+.+..++-++|...++.+..|...|+++...|.+-
T Consensus 33 L~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~el 67 (83)
T 1wlq_A 33 LYEALKENEKLHKEIEQKDSEIARLRKENKDLAEV 67 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334455667777777777777777777775543
No 287
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=39.89 E-value=43 Score=24.69 Aligned_cols=33 Identities=30% Similarity=0.401 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047385 408 LQTITSLQHMVEDLVRAVEELKSENKALKTRIA 440 (483)
Q Consensus 408 ~~~~~~~~~~~~~l~~~~~~~~~e~~~l~~~~~ 440 (483)
...+.+|+..+++|.....+|..+...|+..+.
T Consensus 29 ~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 29 LQRMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445677888888999999999999999988764
No 288
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=39.84 E-value=8.7 Score=33.91 Aligned_cols=15 Identities=33% Similarity=0.576 Sum_probs=13.1
Q ss_pred EEEeeCCCCCCccce
Q 047385 81 TVITYGQTGAGKTFS 95 (483)
Q Consensus 81 ti~ayG~tgSGKT~T 95 (483)
.|+-.|..|||||+.
T Consensus 12 ~I~l~G~~GsGKSTv 26 (184)
T 1y63_A 12 NILITGTPGTGKTSM 26 (184)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478899999999876
No 289
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=39.52 E-value=8.5 Score=41.63 Aligned_cols=20 Identities=25% Similarity=0.479 Sum_probs=17.0
Q ss_pred ceEEEeeCCCCCCccceecC
Q 047385 79 NGTVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 79 n~ti~ayG~tgSGKT~Tm~G 98 (483)
++.++..|..|||||++|..
T Consensus 15 ~~~~lV~AgaGSGKT~~l~~ 34 (673)
T 1uaa_A 15 TGPCLVLAGAGSGKTRVITN 34 (673)
T ss_dssp SSEEEECCCTTSCHHHHHHH
T ss_pred CCCEEEEeCCCCChHHHHHH
Confidence 56778889999999999963
No 290
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=39.26 E-value=9.1 Score=32.94 Aligned_cols=15 Identities=33% Similarity=0.578 Sum_probs=12.5
Q ss_pred EEeeCCCCCCcccee
Q 047385 82 VITYGQTGAGKTFSM 96 (483)
Q Consensus 82 i~ayG~tgSGKT~Tm 96 (483)
.+-+|++|||||..|
T Consensus 26 ~~I~G~NGsGKStil 40 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLL 40 (149)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 356899999999875
No 291
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=39.16 E-value=12 Score=32.21 Aligned_cols=27 Identities=22% Similarity=0.399 Sum_probs=19.7
Q ss_pred HHHHhhc-CcceEEEeeCCCCCCcccee
Q 047385 70 IIRDAFN-GMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 70 lv~~~l~-G~n~ti~ayG~tgSGKT~Tm 96 (483)
++..++. .....|...|.+|+|||..+
T Consensus 8 ~~~~~~~~~~~~~i~v~G~~~~GKssli 35 (183)
T 1moz_A 8 MFDKLWGSNKELRILILGLDGAGKTTIL 35 (183)
T ss_dssp HHGGGTTCSSCEEEEEEEETTSSHHHHH
T ss_pred HHHHhcCCCCccEEEEECCCCCCHHHHH
Confidence 3444554 45667888999999999765
No 292
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=39.05 E-value=19 Score=37.00 Aligned_cols=19 Identities=26% Similarity=0.338 Sum_probs=15.2
Q ss_pred eEEEeeCCCCCCccceecC
Q 047385 80 GTVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 80 ~ti~ayG~tgSGKT~Tm~G 98 (483)
..|+..|++|+|||+|+..
T Consensus 98 ~vI~lvG~~GsGKTTt~~k 116 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGK 116 (433)
T ss_dssp EEEEECCCTTSCHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4566779999999999743
No 293
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=39.02 E-value=62 Score=22.74 Aligned_cols=22 Identities=36% Similarity=0.588 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 047385 420 DLVRAVEELKSENKALKTRIAA 441 (483)
Q Consensus 420 ~l~~~~~~~~~e~~~l~~~~~~ 441 (483)
+|-+.++.++.||..||.+++.
T Consensus 7 QL~~QVe~Lk~ENshLrrEL~d 28 (54)
T 1deb_A 7 QLLKQVEALKMENSNLRQELED 28 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHh
Confidence 3444555666666666666655
No 294
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=38.89 E-value=9.2 Score=32.87 Aligned_cols=16 Identities=25% Similarity=0.351 Sum_probs=13.1
Q ss_pred EEEeeCCCCCCcccee
Q 047385 81 TVITYGQTGAGKTFSM 96 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm 96 (483)
.|+-.|..|||||+..
T Consensus 4 ~I~l~G~~GsGKsT~a 19 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVG 19 (173)
T ss_dssp CEEEESCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4677899999998753
No 295
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=38.81 E-value=12 Score=37.03 Aligned_cols=29 Identities=21% Similarity=0.375 Sum_probs=21.5
Q ss_pred HHHHHHhhcC-c--ceEEEeeCCCCCCcccee
Q 047385 68 LPIIRDAFNG-M--NGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 68 ~plv~~~l~G-~--n~ti~ayG~tgSGKT~Tm 96 (483)
-+-+|.++.| + ...+.-+|++|||||..+
T Consensus 117 ~~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~ 148 (349)
T 1pzn_A 117 SKSLDKLLGGGIETQAITEVFGEFGSGKTQLA 148 (349)
T ss_dssp CHHHHHHHTSSEESSEEEEEEESTTSSHHHHH
T ss_pred CHHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 3567888854 2 345778999999999875
No 296
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=38.76 E-value=7.6 Score=40.79 Aligned_cols=24 Identities=25% Similarity=0.454 Sum_probs=17.3
Q ss_pred HHHhhcCcceEEEeeCCCCCCcccee
Q 047385 71 IRDAFNGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 71 v~~~l~G~n~ti~ayG~tgSGKT~Tm 96 (483)
+..+++|.++ +..++||||||.+.
T Consensus 34 i~~il~g~d~--lv~apTGsGKTl~~ 57 (523)
T 1oyw_A 34 IDTVLSGRDC--LVVMPTGGGKSLCY 57 (523)
T ss_dssp HHHHHTTCCE--EEECSCHHHHHHHH
T ss_pred HHHHHcCCCE--EEECCCCcHHHHHH
Confidence 3445578765 55679999999854
No 297
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=38.73 E-value=11 Score=38.51 Aligned_cols=16 Identities=31% Similarity=0.295 Sum_probs=13.7
Q ss_pred EEEeeCCCCCCcccee
Q 047385 81 TVITYGQTGAGKTFSM 96 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm 96 (483)
.++..|+||||||...
T Consensus 4 ~~lv~a~TGsGKT~~~ 19 (431)
T 2v6i_A 4 LTVLDLHPGAGKTRRV 19 (431)
T ss_dssp EEEEECCTTSCTTTTH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4678999999999984
No 298
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=38.70 E-value=12 Score=41.22 Aligned_cols=24 Identities=42% Similarity=0.631 Sum_probs=18.0
Q ss_pred HHHhhcCcceEEEeeCCCCCCcccee
Q 047385 71 IRDAFNGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 71 v~~~l~G~n~ti~ayG~tgSGKT~Tm 96 (483)
+..++.|.| ++..++||||||.+.
T Consensus 257 i~~~l~~~~--~ll~~~TGsGKTl~~ 280 (797)
T 4a2q_A 257 AQPAINGKN--ALICAPTGSGKTFVS 280 (797)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhCCC--EEEEeCCCChHHHHH
Confidence 344567877 466889999999874
No 299
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=38.56 E-value=8.4 Score=35.58 Aligned_cols=16 Identities=31% Similarity=0.405 Sum_probs=12.8
Q ss_pred EEEeeCCCCCCcccee
Q 047385 81 TVITYGQTGAGKTFSM 96 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm 96 (483)
.+.-.|++|||||..+
T Consensus 18 ii~l~GpsGsGKSTLl 33 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLI 33 (219)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4556799999999875
No 300
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=38.54 E-value=8.3 Score=38.68 Aligned_cols=16 Identities=38% Similarity=0.661 Sum_probs=14.0
Q ss_pred EEEeeCCCCCCcccee
Q 047385 81 TVITYGQTGAGKTFSM 96 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm 96 (483)
.|.-.|++|||||+++
T Consensus 159 vi~lvG~nGsGKTTll 174 (359)
T 2og2_A 159 VIMIVGVNGGGKTTSL 174 (359)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCChHHHHH
Confidence 5667899999999987
No 301
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=38.51 E-value=16 Score=40.80 Aligned_cols=21 Identities=33% Similarity=0.498 Sum_probs=19.3
Q ss_pred cCcceEEEeeCCCCCCcccee
Q 047385 76 NGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 76 ~G~n~ti~ayG~tgSGKT~Tm 96 (483)
++.|-||+..|.+|||||.+.
T Consensus 166 ~~~nQsIiiSGESGAGKTe~t 186 (837)
T 1kk8_A 166 DRENQSCLITGESGAGKTENT 186 (837)
T ss_dssp HTSEEEEEEECSTTSSHHHHH
T ss_pred cCCCcEEEEeCCCCCCchhhH
Confidence 699999999999999999763
No 302
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=38.48 E-value=17 Score=42.22 Aligned_cols=34 Identities=18% Similarity=0.297 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhcCcceEEEeeCCCCCCccce
Q 047385 62 VFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFS 95 (483)
Q Consensus 62 vf~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~T 95 (483)
||.-.-.-.-.-.-.+.|-||+..|-+|||||.+
T Consensus 152 i~aia~~ay~~m~~~~~~Q~i~isGeSGaGKTe~ 185 (1184)
T 1i84_S 152 IYAIADTAYRSMLQDREDQSILCTGESGAGKTEN 185 (1184)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEECCCSTTSSTTHH
T ss_pred HhhhHHHHHHHHHhcCCCcEEEEecCCCCCccHH
No 303
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=38.37 E-value=8.6 Score=35.67 Aligned_cols=17 Identities=24% Similarity=0.331 Sum_probs=14.2
Q ss_pred eEEEeeCCCCCCcccee
Q 047385 80 GTVITYGQTGAGKTFSM 96 (483)
Q Consensus 80 ~ti~ayG~tgSGKT~Tm 96 (483)
..|+-.|+.|||||+.+
T Consensus 28 ~~i~l~G~~GsGKSTl~ 44 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVC 44 (246)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 45777899999999875
No 304
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=38.20 E-value=18 Score=40.21 Aligned_cols=21 Identities=33% Similarity=0.610 Sum_probs=19.4
Q ss_pred cCcceEEEeeCCCCCCcccee
Q 047385 76 NGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 76 ~G~n~ti~ayG~tgSGKT~Tm 96 (483)
.+.|-||+.-|.+|||||.+.
T Consensus 168 ~~~nQsIiiSGESGAGKTe~t 188 (783)
T 4db1_A 168 DRENQSILITGESGAGKTVNT 188 (783)
T ss_dssp HTCCEEEEEECSTTSSHHHHH
T ss_pred hCCCceEEEeCCCCCCCchHH
Confidence 799999999999999999764
No 305
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=38.17 E-value=8.7 Score=34.39 Aligned_cols=16 Identities=38% Similarity=0.582 Sum_probs=13.0
Q ss_pred EEEeeCCCCCCcccee
Q 047385 81 TVITYGQTGAGKTFSM 96 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm 96 (483)
.|.-.|+.|||||+.+
T Consensus 31 ~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 31 HVVVMGVSGSGKTTIA 46 (200)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4566799999999764
No 306
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=38.16 E-value=9.8 Score=36.63 Aligned_cols=17 Identities=18% Similarity=0.280 Sum_probs=15.1
Q ss_pred eEEEeeCCCCCCcccee
Q 047385 80 GTVITYGQTGAGKTFSM 96 (483)
Q Consensus 80 ~ti~ayG~tgSGKT~Tm 96 (483)
..++.+|+.|+|||..+
T Consensus 31 ~~v~i~G~~G~GKT~L~ 47 (357)
T 2fna_A 31 PITLVLGLRRTGKSSII 47 (357)
T ss_dssp SEEEEEESTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 47888999999999876
No 307
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=38.13 E-value=18 Score=40.29 Aligned_cols=21 Identities=43% Similarity=0.665 Sum_probs=19.1
Q ss_pred cCcceEEEeeCCCCCCcccee
Q 047385 76 NGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 76 ~G~n~ti~ayG~tgSGKT~Tm 96 (483)
.+.|-||+..|.+|||||.+.
T Consensus 153 ~~~nQsIiisGESGAGKTe~t 173 (795)
T 1w7j_A 153 DERNQSIIVSGESGAGKTVSA 173 (795)
T ss_dssp HTCCEEEEEECSTTSSHHHHH
T ss_pred cCCCeEEEEeCCCCCCcchHH
Confidence 699999999999999999663
No 308
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=38.02 E-value=11 Score=42.54 Aligned_cols=25 Identities=40% Similarity=0.575 Sum_probs=18.3
Q ss_pred HHHhhcCcceEEEeeCCCCCCccceec
Q 047385 71 IRDAFNGMNGTVITYGQTGAGKTFSME 97 (483)
Q Consensus 71 v~~~l~G~n~ti~ayG~tgSGKT~Tm~ 97 (483)
+..++.|.|+ +..++||||||.+..
T Consensus 257 i~~il~g~~~--ll~a~TGsGKTl~~~ 281 (936)
T 4a2w_A 257 AQPAINGKNA--LICAPTGSGKTFVSI 281 (936)
T ss_dssp HHHHHTTCCE--EEECCTTSCHHHHHH
T ss_pred HHHHHcCCCE--EEEeCCCchHHHHHH
Confidence 3444678774 567899999998753
No 309
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=37.75 E-value=11 Score=33.24 Aligned_cols=20 Identities=20% Similarity=0.167 Sum_probs=15.2
Q ss_pred cCcceEEEeeCCCCCCccce
Q 047385 76 NGMNGTVITYGQTGAGKTFS 95 (483)
Q Consensus 76 ~G~n~ti~ayG~tgSGKT~T 95 (483)
.+..-.|.-.|++|||||+.
T Consensus 5 ~~~~~~I~i~G~~GsGKST~ 24 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTV 24 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHH
T ss_pred ccCceEEEEECCCCCCHHHH
Confidence 34455678899999999875
No 310
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=37.64 E-value=16 Score=41.70 Aligned_cols=21 Identities=33% Similarity=0.542 Sum_probs=19.3
Q ss_pred cCcceEEEeeCCCCCCcccee
Q 047385 76 NGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 76 ~G~n~ti~ayG~tgSGKT~Tm 96 (483)
.+.|-||+..|.+|||||.+.
T Consensus 169 ~~~~QsIiisGESGAGKTe~~ 189 (1010)
T 1g8x_A 169 DRQNQSLLITGESGAGKTENT 189 (1010)
T ss_dssp HTCCEEEEEEESTTSSHHHHH
T ss_pred cCCCeEEEEeCCCCCCcchHH
Confidence 699999999999999999763
No 311
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=37.55 E-value=11 Score=32.69 Aligned_cols=15 Identities=33% Similarity=0.519 Sum_probs=9.1
Q ss_pred EEEeeCCCCCCccce
Q 047385 81 TVITYGQTGAGKTFS 95 (483)
Q Consensus 81 ti~ayG~tgSGKT~T 95 (483)
.|+-.|..|||||+.
T Consensus 7 ~I~l~G~~GsGKST~ 21 (183)
T 2vli_A 7 IIWINGPFGVGKTHT 21 (183)
T ss_dssp EEEEECCC----CHH
T ss_pred EEEEECCCCCCHHHH
Confidence 578899999999875
No 312
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=37.55 E-value=8.9 Score=33.44 Aligned_cols=15 Identities=33% Similarity=0.397 Sum_probs=12.7
Q ss_pred EEEeeCCCCCCccce
Q 047385 81 TVITYGQTGAGKTFS 95 (483)
Q Consensus 81 ti~ayG~tgSGKT~T 95 (483)
.|+-.|..|||||+.
T Consensus 3 ~I~i~G~~GsGKsT~ 17 (194)
T 1nks_A 3 IGIVTGIPGVGKSTV 17 (194)
T ss_dssp EEEEEECTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467889999999875
No 313
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=37.51 E-value=15 Score=37.88 Aligned_cols=35 Identities=14% Similarity=-0.057 Sum_probs=22.2
Q ss_pred cCCCchHHHHHHHHHHHHHHhhcCcceEEEeeCCCCCCccceecC
Q 047385 54 YEKSEQAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 54 ~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm~G 98 (483)
.+..-|.+.+.. ++.|.+ ++..|+||||||.+..-
T Consensus 113 ~l~~~Q~~ai~~--------~~~~~~--~ll~~~tGsGKT~~~~~ 147 (510)
T 2oca_A 113 EPHWYQKDAVFE--------GLVNRR--RILNLPTSAGRSLIQAL 147 (510)
T ss_dssp CCCHHHHHHHHH--------HHHHSE--EEEECCSTTTHHHHHHH
T ss_pred CCCHHHHHHHHH--------HHhcCC--cEEEeCCCCCHHHHHHH
Confidence 444455555444 334544 46689999999998643
No 314
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=37.48 E-value=8.7 Score=36.41 Aligned_cols=21 Identities=29% Similarity=0.559 Sum_probs=17.2
Q ss_pred cCcceEEEeeCCCCCCcccee
Q 047385 76 NGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 76 ~G~n~ti~ayG~tgSGKT~Tm 96 (483)
.|+...|...|.+|+|||..+
T Consensus 5 ~g~~~~I~vvG~~g~GKSTLi 25 (274)
T 3t5d_A 5 SGFEFTLMVVGESGLGKSTLI 25 (274)
T ss_dssp --CEEEEEEEECTTSSHHHHH
T ss_pred CccEEEEEEECCCCCCHHHHH
Confidence 688899999999999999764
No 315
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=37.30 E-value=18 Score=41.38 Aligned_cols=21 Identities=29% Similarity=0.523 Sum_probs=19.2
Q ss_pred cCcceEEEeeCCCCCCcccee
Q 047385 76 NGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 76 ~G~n~ti~ayG~tgSGKT~Tm 96 (483)
.+.|-||+..|.+|||||.+.
T Consensus 143 ~~~~QsIiisGESGAGKTe~~ 163 (995)
T 2ycu_A 143 DREDQSILCTGESGAGKTENT 163 (995)
T ss_dssp HCCCEEEEEECBTTSSHHHHH
T ss_pred cCCCcEEEecCCCCCCchhhH
Confidence 699999999999999999763
No 316
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=37.26 E-value=53 Score=21.11 Aligned_cols=26 Identities=8% Similarity=0.110 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047385 412 TSLQHMVEDLVRAVEELKSENKALKT 437 (483)
Q Consensus 412 ~~~~~~~~~l~~~~~~~~~e~~~l~~ 437 (483)
.+++..+|++-.+...++.|..+|+.
T Consensus 4 nQledKvEel~~~~~~l~nEv~Rl~~ 29 (34)
T 2r2v_A 4 KQVADKLEEVASKLYHNANELARVAK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34455556666666666666666554
No 317
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=37.21 E-value=12 Score=36.43 Aligned_cols=30 Identities=20% Similarity=0.321 Sum_probs=22.4
Q ss_pred HHHHHHhhc-Cc--ceEEEeeCCCCCCccceec
Q 047385 68 LPIIRDAFN-GM--NGTVITYGQTGAGKTFSME 97 (483)
Q Consensus 68 ~plv~~~l~-G~--n~ti~ayG~tgSGKT~Tm~ 97 (483)
-+-+|.++. |+ ...+.-||++|||||..+.
T Consensus 93 ~~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~ 125 (324)
T 2z43_A 93 SQALDGLLAGGIETRTMTEFFGEFGSGKTQLCH 125 (324)
T ss_dssp CHHHHHHTTTSEETTSEEEEEESTTSSHHHHHH
T ss_pred chhHHHhcCCCCCCCcEEEEECCCCCCHhHHHH
Confidence 366788885 33 3357889999999998764
No 318
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=37.21 E-value=10 Score=33.15 Aligned_cols=15 Identities=27% Similarity=0.468 Sum_probs=12.6
Q ss_pred EEEeeCCCCCCccce
Q 047385 81 TVITYGQTGAGKTFS 95 (483)
Q Consensus 81 ti~ayG~tgSGKT~T 95 (483)
.|+-.|..|||||+.
T Consensus 4 ~I~l~G~~GsGKsT~ 18 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTI 18 (184)
T ss_dssp SEEEECSTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 377789999999875
No 319
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=37.18 E-value=42 Score=21.54 Aligned_cols=27 Identities=22% Similarity=0.234 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 047385 418 VEDLVRAVEELKSENKALKTRIAAAGK 444 (483)
Q Consensus 418 ~~~l~~~~~~~~~e~~~l~~~~~~~~~ 444 (483)
+.+|..+++++..+|..|+.+...|..
T Consensus 3 MnQLE~kVEeLl~~n~~Le~eV~rLk~ 29 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXEVXRLKX 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 567778888888888888888777653
No 320
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=37.15 E-value=17 Score=36.62 Aligned_cols=17 Identities=24% Similarity=0.145 Sum_probs=14.0
Q ss_pred eEEEeeCCCCCCcccee
Q 047385 80 GTVITYGQTGAGKTFSM 96 (483)
Q Consensus 80 ~ti~ayG~tgSGKT~Tm 96 (483)
..+.-+|++|||||+.+
T Consensus 170 ~~i~l~G~~GsGKSTl~ 186 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLA 186 (377)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 36677999999998875
No 321
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=37.14 E-value=9.3 Score=35.65 Aligned_cols=15 Identities=33% Similarity=0.598 Sum_probs=12.3
Q ss_pred EEeeCCCCCCcccee
Q 047385 82 VITYGQTGAGKTFSM 96 (483)
Q Consensus 82 i~ayG~tgSGKT~Tm 96 (483)
+.-.|++|||||+.|
T Consensus 34 ~~iiG~nGsGKSTLl 48 (235)
T 3tif_A 34 VSIMGPSGSGKSTML 48 (235)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCcHHHHH
Confidence 455799999999875
No 322
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=37.09 E-value=8.5 Score=34.51 Aligned_cols=16 Identities=31% Similarity=0.268 Sum_probs=12.8
Q ss_pred EEEeeCCCCCCcccee
Q 047385 81 TVITYGQTGAGKTFSM 96 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm 96 (483)
.|--.|++|||||+.+
T Consensus 8 ~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 8 VIGIAGGTASGKTTLA 23 (211)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3455799999999875
No 323
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=37.09 E-value=10 Score=33.84 Aligned_cols=17 Identities=29% Similarity=0.636 Sum_probs=13.9
Q ss_pred eEEEeeCCCCCCcccee
Q 047385 80 GTVITYGQTGAGKTFSM 96 (483)
Q Consensus 80 ~ti~ayG~tgSGKT~Tm 96 (483)
..|+-.|..|||||+..
T Consensus 19 ~~I~l~G~~GsGKSTla 35 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVG 35 (202)
T ss_dssp SCEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45788999999998753
No 324
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=37.06 E-value=29 Score=33.54 Aligned_cols=17 Identities=29% Similarity=0.503 Sum_probs=13.8
Q ss_pred EEEeeCCCCCCccceec
Q 047385 81 TVITYGQTGAGKTFSME 97 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm~ 97 (483)
.|...|.+|+|||+++.
T Consensus 100 vi~i~G~~G~GKTT~~~ 116 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAG 116 (297)
T ss_dssp EEEEECSSCSSTTHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 45567999999999874
No 325
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=36.96 E-value=9.5 Score=33.34 Aligned_cols=17 Identities=41% Similarity=0.440 Sum_probs=13.8
Q ss_pred EEEeeCCCCCCccceec
Q 047385 81 TVITYGQTGAGKTFSME 97 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm~ 97 (483)
.+.-.|+.|||||..+-
T Consensus 35 ~v~L~G~nGaGKTTLlr 51 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTR 51 (158)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 45567999999999764
No 326
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=36.90 E-value=36 Score=22.15 Aligned_cols=29 Identities=41% Similarity=0.385 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 047385 417 MVEDLVRAVEELKSENKALKTRIAAAGKI 445 (483)
Q Consensus 417 ~~~~l~~~~~~~~~e~~~l~~~~~~~~~~ 445 (483)
.+.+|..+++++..++..|+.+.+.|...
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~l 30 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLKKK 30 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 35667777777777777777777766543
No 327
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=36.82 E-value=13 Score=32.70 Aligned_cols=17 Identities=35% Similarity=0.282 Sum_probs=13.7
Q ss_pred eEEEeeCCCCCCcccee
Q 047385 80 GTVITYGQTGAGKTFSM 96 (483)
Q Consensus 80 ~ti~ayG~tgSGKT~Tm 96 (483)
..|+-.|..|||||+..
T Consensus 14 ~~i~l~G~~GsGKsT~~ 30 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIA 30 (186)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred cEEEEEcCCCCCHHHHH
Confidence 45677899999998864
No 328
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=36.74 E-value=16 Score=35.36 Aligned_cols=30 Identities=23% Similarity=0.309 Sum_probs=22.8
Q ss_pred HHHHHHhhc-Cc--ceEEEeeCCCCCCccceec
Q 047385 68 LPIIRDAFN-GM--NGTVITYGQTGAGKTFSME 97 (483)
Q Consensus 68 ~plv~~~l~-G~--n~ti~ayG~tgSGKT~Tm~ 97 (483)
-+-+|.++. |+ ...+.-||++|||||..+.
T Consensus 84 ~~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~ 116 (322)
T 2i1q_A 84 SSELDSVLGGGLESQSVTEFAGVFGSGKTQIMH 116 (322)
T ss_dssp CHHHHHHTTSSEETTEEEEEEESTTSSHHHHHH
T ss_pred ChhHHHhcCCCccCCeEEEEECCCCCCHHHHHH
Confidence 467888885 43 3467889999999998764
No 329
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=36.69 E-value=9.4 Score=37.33 Aligned_cols=18 Identities=33% Similarity=0.421 Sum_probs=14.9
Q ss_pred eEEEeeCCCCCCccceec
Q 047385 80 GTVITYGQTGAGKTFSME 97 (483)
Q Consensus 80 ~ti~ayG~tgSGKT~Tm~ 97 (483)
..|.-.|++|||||+|+.
T Consensus 105 ~vi~ivG~~GsGKTTl~~ 122 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCG 122 (306)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred eEEEEEcCCCChHHHHHH
Confidence 357778999999999873
No 330
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=36.65 E-value=10 Score=32.90 Aligned_cols=15 Identities=27% Similarity=0.488 Sum_probs=12.5
Q ss_pred EEEeeCCCCCCccce
Q 047385 81 TVITYGQTGAGKTFS 95 (483)
Q Consensus 81 ti~ayG~tgSGKT~T 95 (483)
.|+-.|+.|||||+.
T Consensus 6 ~i~i~G~~GsGKsTl 20 (175)
T 1via_A 6 NIVFIGFMGSGKSTL 20 (175)
T ss_dssp CEEEECCTTSCHHHH
T ss_pred EEEEEcCCCCCHHHH
Confidence 367789999999875
No 331
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=36.64 E-value=9.8 Score=34.84 Aligned_cols=18 Identities=17% Similarity=0.171 Sum_probs=14.2
Q ss_pred cceEEEeeCCCCCCccce
Q 047385 78 MNGTVITYGQTGAGKTFS 95 (483)
Q Consensus 78 ~n~ti~ayG~tgSGKT~T 95 (483)
.--..|-||+.|||||.-
T Consensus 19 ~g~l~fiyG~MgsGKTt~ 36 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTE 36 (195)
T ss_dssp CCEEEEEEECTTSCHHHH
T ss_pred ceEEEEEECCCCCcHHHH
Confidence 344778999999999943
No 332
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=36.55 E-value=31 Score=28.37 Aligned_cols=25 Identities=44% Similarity=0.679 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 047385 417 MVEDLVRAVEELKSENKALKTRIAA 441 (483)
Q Consensus 417 ~~~~l~~~~~~~~~e~~~l~~~~~~ 441 (483)
.+|+|...++.|+-||..||.++..
T Consensus 9 t~EeLaaeL~kLqmENK~LKkkl~~ 33 (110)
T 2oa5_A 9 TYEEMVKEVERLKLENKTLKQKVKS 33 (110)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4688888999999999999999863
No 333
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=36.45 E-value=18 Score=41.90 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=18.1
Q ss_pred HHhhcCcceEEEeeCCCCCCccce
Q 047385 72 RDAFNGMNGTVITYGQTGAGKTFS 95 (483)
Q Consensus 72 ~~~l~G~n~ti~ayG~tgSGKT~T 95 (483)
.+.-.|...-++..|+||||||..
T Consensus 617 ~~~~~g~p~d~ll~~~TGsGKT~v 640 (1151)
T 2eyq_A 617 SDMCQPLAMDRLVCGDVGFGKTEV 640 (1151)
T ss_dssp HHHHSSSCCEEEEECCCCTTTHHH
T ss_pred HHHhcCCcCcEEEECCCCCCHHHH
Confidence 344457755678899999999965
No 334
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=36.45 E-value=3.4e+02 Score=27.45 Aligned_cols=29 Identities=21% Similarity=0.079 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 047385 415 QHMVEDLVRAVEELKSENKALKTRIAAAG 443 (483)
Q Consensus 415 ~~~~~~l~~~~~~~~~e~~~l~~~~~~~~ 443 (483)
.+..+..+..++.+++|+++++..+..+.
T Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (487)
T 3oja_A 434 IRDWDMYQHKETQLAEENARLKKLNGEAD 462 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhHHHHHHHHhhhhhhhhhhhh
Confidence 34445555666666666666666665543
No 335
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=36.22 E-value=12 Score=38.29 Aligned_cols=21 Identities=33% Similarity=0.355 Sum_probs=16.2
Q ss_pred hhcCcceEEEeeCCCCCCcccee
Q 047385 74 AFNGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 74 ~l~G~n~ti~ayG~tgSGKT~Tm 96 (483)
+++|.| ++..|+||||||...
T Consensus 5 l~~g~~--vlv~a~TGSGKT~~~ 25 (440)
T 1yks_A 5 LKKGMT--TVLDFHPGAGKTRRF 25 (440)
T ss_dssp TSTTCE--EEECCCTTSSTTTTH
T ss_pred hhCCCC--EEEEcCCCCCHHHHH
Confidence 346666 467899999999984
No 336
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=36.19 E-value=99 Score=20.87 Aligned_cols=29 Identities=21% Similarity=0.405 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047385 411 ITSLQHMVEDLVRAVEELKSENKALKTRI 439 (483)
Q Consensus 411 ~~~~~~~~~~l~~~~~~~~~e~~~l~~~~ 439 (483)
..+++....+|..++..++.||.-||+-+
T Consensus 12 ~k~le~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 12 VKDLENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 34555666777777778888887777654
No 337
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=36.12 E-value=13 Score=38.21 Aligned_cols=16 Identities=25% Similarity=0.308 Sum_probs=13.2
Q ss_pred EEEeeCCCCCCcccee
Q 047385 81 TVITYGQTGAGKTFSM 96 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm 96 (483)
.++..++||||||...
T Consensus 23 ~vlv~a~TGsGKT~~~ 38 (459)
T 2z83_A 23 MTVLDLHPGSGKTRKI 38 (459)
T ss_dssp EEEECCCTTSCTTTTH
T ss_pred cEEEECCCCCCHHHHH
Confidence 3567899999999983
No 338
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=36.10 E-value=11 Score=34.43 Aligned_cols=17 Identities=35% Similarity=0.606 Sum_probs=13.8
Q ss_pred EEEeeCCCCCCccceec
Q 047385 81 TVITYGQTGAGKTFSME 97 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm~ 97 (483)
..+-+|..|||||+.+.
T Consensus 7 i~l~tG~pGsGKT~~a~ 23 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMV 23 (199)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEEeCCCCCHHHHHH
Confidence 35678999999999753
No 339
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=36.00 E-value=9.8 Score=41.46 Aligned_cols=20 Identities=30% Similarity=0.393 Sum_probs=15.2
Q ss_pred hcCcceEEEeeCCCCCCcccee
Q 047385 75 FNGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 75 l~G~n~ti~ayG~tgSGKT~Tm 96 (483)
.+|.| ++..|+||||||...
T Consensus 37 ~~~~~--~lv~apTGsGKT~~~ 56 (720)
T 2zj8_A 37 LEGKN--ALISIPTASGKTLIA 56 (720)
T ss_dssp GGTCE--EEEECCGGGCHHHHH
T ss_pred cCCCc--EEEEcCCccHHHHHH
Confidence 35555 677899999999764
No 340
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=35.78 E-value=77 Score=19.50 Aligned_cols=22 Identities=45% Similarity=0.456 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 047385 421 LVRAVEELKSENKALKTRIAAA 442 (483)
Q Consensus 421 l~~~~~~~~~e~~~l~~~~~~~ 442 (483)
|++.+..+++|...|+-++..+
T Consensus 7 lkqeiaalkkeiaalkfeiaal 28 (33)
T 4dzn_A 7 LKQEIAALKKEIAALKFEIAAL 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444555444443
No 341
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=35.67 E-value=11 Score=33.22 Aligned_cols=16 Identities=25% Similarity=0.447 Sum_probs=13.3
Q ss_pred EEEeeCCCCCCcccee
Q 047385 81 TVITYGQTGAGKTFSM 96 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm 96 (483)
.|+-.|.+|||||+..
T Consensus 14 ~I~l~G~~GsGKsT~a 29 (199)
T 2bwj_A 14 IIFIIGGPGSGKGTQC 29 (199)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5778899999998753
No 342
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=35.65 E-value=12 Score=32.00 Aligned_cols=15 Identities=20% Similarity=0.242 Sum_probs=12.6
Q ss_pred EEEeeCCCCCCccce
Q 047385 81 TVITYGQTGAGKTFS 95 (483)
Q Consensus 81 ti~ayG~tgSGKT~T 95 (483)
.|+-.|..|||||+.
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTV 16 (168)
T ss_dssp EEEEESCTTSCHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 367789999999875
No 343
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=35.50 E-value=25 Score=36.24 Aligned_cols=35 Identities=9% Similarity=0.067 Sum_probs=25.0
Q ss_pred chhhhhhhcchhhHHHHHHHHHhhhhccccccccc
Q 047385 445 IDAFHKEAGENGYASIVHKISDRLSHLVSWIWPFS 479 (483)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (483)
++..+=+.|++---+-|.+|..++..+.+....|+
T Consensus 396 sr~~ria~gsg~~~~~v~~ll~~~~~~~~~~~~~~ 430 (443)
T 3dm5_A 396 SRIKRIARGSGTSTKDVKELLDQYRQMKKLFKSMN 430 (443)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 34445566777777888888888888777666664
No 344
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=35.46 E-value=45 Score=26.90 Aligned_cols=61 Identities=7% Similarity=0.084 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchh-------hhhhhcchhhHHHHHHHHHhhhh
Q 047385 410 TITSLQHMVEDLVRAVEELKSENKALKTRIAAAGKIDA-------FHKEAGENGYASIVHKISDRLSH 470 (483)
Q Consensus 410 ~~~~~~~~~~~l~~~~~~~~~e~~~l~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 470 (483)
.+..|++.+.+-+..-.+.+.+...+..+++.|+-..= ..+......+...+.+|..+|.|
T Consensus 27 e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~kn~~L~~qL~d 94 (97)
T 2eqb_B 27 EVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLRE 94 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455555555555666666777777777777654321 12233344466666666666654
No 345
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=35.42 E-value=56 Score=20.25 Aligned_cols=26 Identities=23% Similarity=0.345 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047385 414 LQHMVEDLVRAVEELKSENKALKTRI 439 (483)
Q Consensus 414 ~~~~~~~l~~~~~~~~~e~~~l~~~~ 439 (483)
+++.+.+|+..++++++..++|..-.
T Consensus 4 lee~~r~l~~ivq~lq~r~drle~tv 29 (32)
T 2akf_A 4 LEEDVRNLNAIVQKLQERLDRLEETV 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555443
No 346
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=35.29 E-value=1.1e+02 Score=23.21 Aligned_cols=31 Identities=16% Similarity=0.320 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 047385 413 SLQHMVEDLVRAVEELKSENKALKTRIAAAG 443 (483)
Q Consensus 413 ~~~~~~~~l~~~~~~~~~e~~~l~~~~~~~~ 443 (483)
.|+..+..++..+++-+.+-.+++.++..+.
T Consensus 18 ~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~ 48 (72)
T 3cve_A 18 DLEGQLSEMEQRLEKSQSEQDAFRSNLKTLL 48 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555554433
No 347
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=35.11 E-value=21 Score=41.01 Aligned_cols=21 Identities=33% Similarity=0.521 Sum_probs=19.4
Q ss_pred cCcceEEEeeCCCCCCcccee
Q 047385 76 NGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 76 ~G~n~ti~ayG~tgSGKT~Tm 96 (483)
.+.|-||+.-|.+|||||.+.
T Consensus 141 ~~~nQsIiiSGESGAGKTest 161 (1052)
T 4anj_A 141 LKLSQSIIVSGESGAGKTENT 161 (1052)
T ss_dssp HTCCEEEEEECSTTSSHHHHH
T ss_pred hCCCceEEEecCCCCCHHHHH
Confidence 799999999999999999764
No 348
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=35.06 E-value=11 Score=33.76 Aligned_cols=15 Identities=33% Similarity=0.552 Sum_probs=12.3
Q ss_pred EEeeCCCCCCcccee
Q 047385 82 VITYGQTGAGKTFSM 96 (483)
Q Consensus 82 i~ayG~tgSGKT~Tm 96 (483)
|+-.|+.|||||+..
T Consensus 3 I~l~G~~GsGKsT~a 17 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQA 17 (216)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 566899999998763
No 349
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=35.06 E-value=14 Score=36.69 Aligned_cols=30 Identities=23% Similarity=0.309 Sum_probs=21.9
Q ss_pred HHHHHHhhc--Cc--ceEEEeeCCCCCCccceec
Q 047385 68 LPIIRDAFN--GM--NGTVITYGQTGAGKTFSME 97 (483)
Q Consensus 68 ~plv~~~l~--G~--n~ti~ayG~tgSGKT~Tm~ 97 (483)
-+-+|.++. |+ ...+..||++|||||+.+.
T Consensus 46 ~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal 79 (349)
T 2zr9_A 46 SISLDVALGIGGLPRGRVIEIYGPESSGKTTVAL 79 (349)
T ss_dssp CHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHH
T ss_pred CHHHHHHhccCCccCCeEEEEECCCCCCHHHHHH
Confidence 355677776 43 3457889999999998753
No 350
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=35.03 E-value=21 Score=34.89 Aligned_cols=34 Identities=18% Similarity=0.181 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHHHHhhcCc-ceEEEeeCCCCCCcccee
Q 047385 59 QAEVFEFLALPIIRDAFNGM-NGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 59 Q~~vf~~~~~plv~~~l~G~-n~ti~ayG~tgSGKT~Tm 96 (483)
|+++++... ..+-.|. ...++-||+.|+|||.+.
T Consensus 7 ~~~~~~~l~----~~i~~~~~~~a~L~~G~~G~GKt~~a 41 (334)
T 1a5t_A 7 LRPDFEKLV----ASYQAGRGHHALLIQALPGMGDDALI 41 (334)
T ss_dssp GHHHHHHHH----HHHHTTCCCSEEEEECCTTSCHHHHH
T ss_pred hHHHHHHHH----HHHHcCCcceeEEEECCCCchHHHHH
Confidence 455555433 3333443 446888999999999874
No 351
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=34.91 E-value=12 Score=33.13 Aligned_cols=17 Identities=29% Similarity=0.491 Sum_probs=13.8
Q ss_pred eEEEeeCCCCCCcccee
Q 047385 80 GTVITYGQTGAGKTFSM 96 (483)
Q Consensus 80 ~ti~ayG~tgSGKT~Tm 96 (483)
..|+-.|..|||||+..
T Consensus 16 ~~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35778899999999763
No 352
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=34.84 E-value=12 Score=35.13 Aligned_cols=17 Identities=29% Similarity=0.311 Sum_probs=14.1
Q ss_pred eEEEeeCCCCCCcccee
Q 047385 80 GTVITYGQTGAGKTFSM 96 (483)
Q Consensus 80 ~ti~ayG~tgSGKT~Tm 96 (483)
..|+..|.+|||||+..
T Consensus 5 ~lIvl~G~pGSGKSTla 21 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFS 21 (260)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred EEEEEEcCCCCCHHHHH
Confidence 35788999999999863
No 353
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=34.76 E-value=13 Score=33.85 Aligned_cols=28 Identities=36% Similarity=0.502 Sum_probs=20.0
Q ss_pred HHHHHhhc-Cc--ceEEEeeCCCCCCcccee
Q 047385 69 PIIRDAFN-GM--NGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 69 plv~~~l~-G~--n~ti~ayG~tgSGKT~Tm 96 (483)
|-+|.++. |+ ...++.+|.+|+|||..+
T Consensus 17 ~~LD~~l~GGl~~G~l~~i~G~pG~GKT~l~ 47 (251)
T 2zts_A 17 PGFDELIEGGFPEGTTVLLTGGTGTGKTTFA 47 (251)
T ss_dssp TTTGGGTTTSEETTCEEEEECCTTSSHHHHH
T ss_pred HHHHHhhcCCCCCCeEEEEEeCCCCCHHHHH
Confidence 34567775 43 345778999999999764
No 354
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=34.73 E-value=11 Score=34.51 Aligned_cols=16 Identities=25% Similarity=0.573 Sum_probs=12.5
Q ss_pred EEEeeCCCCCCcccee
Q 047385 81 TVITYGQTGAGKTFSM 96 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm 96 (483)
.|.-.|++|+|||..+
T Consensus 21 ~ivl~GPSGaGKsTL~ 36 (197)
T 3ney_A 21 TLVLIGASGVGRSHIK 36 (197)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 4556899999998764
No 355
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=34.67 E-value=17 Score=41.81 Aligned_cols=23 Identities=22% Similarity=0.235 Sum_probs=17.1
Q ss_pred HHHHhhcCcceEEEeeCCCCCCccc
Q 047385 70 IIRDAFNGMNGTVITYGQTGAGKTF 94 (483)
Q Consensus 70 lv~~~l~G~n~ti~ayG~tgSGKT~ 94 (483)
.+..+++|.| +++.++||||||.
T Consensus 64 ai~~il~g~d--vlv~apTGSGKTl 86 (1054)
T 1gku_B 64 WAKRILRKES--FAATAPTGVGKTS 86 (1054)
T ss_dssp HHHHHHTTCC--EECCCCBTSCSHH
T ss_pred HHHHHHhCCC--EEEEcCCCCCHHH
Confidence 3445567876 5678999999994
No 356
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=34.51 E-value=11 Score=41.07 Aligned_cols=47 Identities=21% Similarity=0.308 Sum_probs=26.5
Q ss_pred hhcCcceEEEeeCCCCCCccceecCCCCCCccccccCch--h--hhHHHHHHhhhcC
Q 047385 74 AFNGMNGTVITYGQTGAGKTFSMEGPSILACDEQKKGLL--Q--RTVDELFDCMKSS 126 (483)
Q Consensus 74 ~l~G~n~ti~ayG~tgSGKT~Tm~G~~~~~~~~~~~Gii--p--r~~~~LF~~i~~~ 126 (483)
.++|. .|+..|+||||||+.+.-.- .....|++ | -.+.++++.+...
T Consensus 152 ~l~rk--~vlv~apTGSGKT~~al~~l----~~~~~gl~l~PtR~LA~Qi~~~l~~~ 202 (677)
T 3rc3_A 152 AMQRK--IIFHSGPTNSGKTYHAIQKY----FSAKSGVYCGPLKLLAHEIFEKSNAA 202 (677)
T ss_dssp TSCCE--EEEEECCTTSSHHHHHHHHH----HHSSSEEEEESSHHHHHHHHHHHHHT
T ss_pred hcCCC--EEEEEcCCCCCHHHHHHHHH----HhcCCeEEEeCHHHHHHHHHHHHHhc
Confidence 34554 46789999999998432100 00123333 3 2456677777664
No 357
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=34.49 E-value=1.1e+02 Score=24.35 Aligned_cols=19 Identities=26% Similarity=0.301 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 047385 424 AVEELKSENKALKTRIAAA 442 (483)
Q Consensus 424 ~~~~~~~e~~~l~~~~~~~ 442 (483)
++..|+.+|..|..++..+
T Consensus 24 KVR~LEqqN~~Le~~i~~l 42 (93)
T 3s4r_A 24 KVRFLEQQNKILLAELEQL 42 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444433
No 358
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=34.39 E-value=14 Score=36.41 Aligned_cols=16 Identities=38% Similarity=0.399 Sum_probs=13.5
Q ss_pred eEEEeeCCCCCCccce
Q 047385 80 GTVITYGQTGAGKTFS 95 (483)
Q Consensus 80 ~ti~ayG~tgSGKT~T 95 (483)
-.|+-.|+||||||..
T Consensus 6 ~~i~i~GptGsGKTtl 21 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDL 21 (323)
T ss_dssp EEEEEECCTTSCHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 3678899999999875
No 359
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=34.36 E-value=42 Score=21.46 Aligned_cols=27 Identities=37% Similarity=0.389 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 047385 418 VEDLVRAVEELKSENKALKTRIAAAGK 444 (483)
Q Consensus 418 ~~~l~~~~~~~~~e~~~l~~~~~~~~~ 444 (483)
+.+|..+++++..+|..|+.++..|..
T Consensus 2 M~QLE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 346777888888888888888877653
No 360
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=34.32 E-value=1.3e+02 Score=24.22 Aligned_cols=25 Identities=28% Similarity=0.304 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 047385 418 VEDLVRAVEELKSENKALKTRIAAA 442 (483)
Q Consensus 418 ~~~l~~~~~~~~~e~~~l~~~~~~~ 442 (483)
+..++++|++|+.|+.+|+++++.|
T Consensus 14 ~~~lr~ei~~Le~E~~rLr~~~~~L 38 (100)
T 1go4_E 14 ADTLRLKVEELEGERSRLEEEKRML 38 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555544443
No 361
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=34.20 E-value=11 Score=35.91 Aligned_cols=28 Identities=21% Similarity=0.277 Sum_probs=19.3
Q ss_pred HHHHhhcCcc--eEEEeeCCCCCCccceec
Q 047385 70 IIRDAFNGMN--GTVITYGQTGAGKTFSME 97 (483)
Q Consensus 70 lv~~~l~G~n--~ti~ayG~tgSGKT~Tm~ 97 (483)
.++.+.-|+. ..+.-.|++|+|||..+.
T Consensus 24 ~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~ 53 (296)
T 1cr0_A 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVR 53 (296)
T ss_dssp THHHHHCSBCTTCEEEEEESTTSSHHHHHH
T ss_pred HHHHHhcCCCCCeEEEEEeCCCCCHHHHHH
Confidence 3455554443 256678999999998863
No 362
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=34.12 E-value=10 Score=34.21 Aligned_cols=15 Identities=27% Similarity=0.636 Sum_probs=12.2
Q ss_pred EEeeCCCCCCcccee
Q 047385 82 VITYGQTGAGKTFSM 96 (483)
Q Consensus 82 i~ayG~tgSGKT~Tm 96 (483)
|+-.||+|+|||..+
T Consensus 4 IVi~GPSG~GK~Tl~ 18 (186)
T 1ex7_A 4 IVISGPSGTGKSTLL 18 (186)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 667899999997653
No 363
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=34.09 E-value=28 Score=34.84 Aligned_cols=21 Identities=29% Similarity=0.400 Sum_probs=17.7
Q ss_pred cCcceEEEeeCCCCCCcccee
Q 047385 76 NGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 76 ~G~n~ti~ayG~tgSGKT~Tm 96 (483)
.|.-..|+-+|+.|+|||+..
T Consensus 21 ~g~~~~i~l~G~~G~GKTTl~ 41 (359)
T 2ga8_A 21 DNYRVCVILVGSPGSGKSTIA 41 (359)
T ss_dssp TCSCEEEEEECCTTSSHHHHH
T ss_pred cCCeeEEEEECCCCCcHHHHH
Confidence 566667888999999999875
No 364
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=34.01 E-value=11 Score=32.78 Aligned_cols=16 Identities=31% Similarity=0.492 Sum_probs=13.2
Q ss_pred EEEeeCCCCCCcccee
Q 047385 81 TVITYGQTGAGKTFSM 96 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm 96 (483)
.|+-.|..|||||+..
T Consensus 8 ~I~l~G~~GsGKsT~~ 23 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQC 23 (194)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5777899999998853
No 365
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=34.00 E-value=12 Score=34.18 Aligned_cols=35 Identities=20% Similarity=0.395 Sum_probs=21.5
Q ss_pred EEeeCCCCCCccceecCCCCCCccccccCchhhhHHHHHHh
Q 047385 82 VITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTVDELFDC 122 (483)
Q Consensus 82 i~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~ 122 (483)
|+-.|++||||++---= -....|+..-..-+||..
T Consensus 3 Iil~GpPGsGKgTqa~~------La~~~g~~~istGdllR~ 37 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKR------LAKEKGFVHISTGDILRE 37 (206)
T ss_dssp EEEECSTTSSHHHHHHH------HHHHHCCEEEEHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH------HHHHHCCeEEcHHHHHHH
Confidence 67789999999753210 013346666666666653
No 366
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=33.94 E-value=12 Score=33.86 Aligned_cols=15 Identities=33% Similarity=0.550 Sum_probs=12.9
Q ss_pred EEEeeCCCCCCccce
Q 047385 81 TVITYGQTGAGKTFS 95 (483)
Q Consensus 81 ti~ayG~tgSGKT~T 95 (483)
.|+-.|..|||||+.
T Consensus 6 ~I~l~G~~GsGKsT~ 20 (220)
T 1aky_A 6 RMVLIGPPGAGKGTQ 20 (220)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 477899999999875
No 367
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=33.89 E-value=12 Score=34.67 Aligned_cols=36 Identities=22% Similarity=0.266 Sum_probs=21.8
Q ss_pred EEEeeCCCCCCccceecCCCCCCccccccCchhhhHHHHHHh
Q 047385 81 TVITYGQTGAGKTFSMEGPSILACDEQKKGLLQRTVDELFDC 122 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~ 122 (483)
.||..|++||||++---= -....|+......+||..
T Consensus 31 iI~llGpPGsGKgTqa~~------L~~~~g~~hIstGdllR~ 66 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEK------LVQKFHFNHLSSGDLLRA 66 (217)
T ss_dssp EEEEECCTTCCHHHHHHH------HHHHHCCEEECHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH------HHHHHCCceEcHHHHHHH
Confidence 578899999999753200 012345655556666643
No 368
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=33.79 E-value=43 Score=20.34 Aligned_cols=20 Identities=30% Similarity=0.489 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 047385 423 RAVEELKSENKALKTRIAAA 442 (483)
Q Consensus 423 ~~~~~~~~e~~~l~~~~~~~ 442 (483)
--+..++.||.+|+.+.+.+
T Consensus 6 allasleaenkqlkakveel 25 (31)
T 1p9i_A 6 ALLASLEAENKQLKAKVEEL 25 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555666777777666553
No 369
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=33.78 E-value=11 Score=33.45 Aligned_cols=17 Identities=35% Similarity=0.296 Sum_probs=13.2
Q ss_pred EEEeeCCCCCCccceec
Q 047385 81 TVITYGQTGAGKTFSME 97 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm~ 97 (483)
.|.-.|.+|||||..+.
T Consensus 6 ~i~i~G~sGsGKTTl~~ 22 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLME 22 (169)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 35567999999988753
No 370
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=33.71 E-value=12 Score=32.78 Aligned_cols=16 Identities=25% Similarity=0.451 Sum_probs=13.3
Q ss_pred EEEeeCCCCCCcccee
Q 047385 81 TVITYGQTGAGKTFSM 96 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm 96 (483)
.|+-.|..|||||+..
T Consensus 11 ~I~l~G~~GsGKsT~~ 26 (196)
T 2c95_A 11 IIFVVGGPGSGKGTQC 26 (196)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5777899999998753
No 371
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=33.63 E-value=11 Score=37.50 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=20.2
Q ss_pred hhcCcceEEEeeCCCCCCcccee
Q 047385 74 AFNGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 74 ~l~G~n~ti~ayG~tgSGKT~Tm 96 (483)
+..|++..|...|.+|+|||..+
T Consensus 32 ~~~~~~~~I~vvG~~g~GKSTLl 54 (361)
T 2qag_A 32 VKKGFEFTLMVVGESGLGKSTLI 54 (361)
T ss_dssp HHHCCEECEEECCCTTSCHHHHH
T ss_pred ecCCCCEEEEEEcCCCCCHHHHH
Confidence 46799999999999999999765
No 372
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=33.49 E-value=51 Score=25.11 Aligned_cols=27 Identities=33% Similarity=0.426 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047385 413 SLQHMVEDLVRAVEELKSENKALKTRI 439 (483)
Q Consensus 413 ~~~~~~~~l~~~~~~~~~e~~~l~~~~ 439 (483)
-|+..+.+|..++.+|+.||..||.-+
T Consensus 19 vLKe~I~EL~e~~~qLE~EN~~Lk~~a 45 (78)
T 1dip_A 19 ILKEQIRELVEKNSQLERENTLLKTLA 45 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 455667888888899999999888753
No 373
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=33.40 E-value=11 Score=34.29 Aligned_cols=16 Identities=25% Similarity=0.428 Sum_probs=13.4
Q ss_pred EEEeeCCCCCCcccee
Q 047385 81 TVITYGQTGAGKTFSM 96 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm 96 (483)
.|+-.|.+|||||+..
T Consensus 9 ~I~l~G~~GsGKsT~a 24 (227)
T 1zd8_A 9 RAVIMGAPGSGKGTVS 24 (227)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778899999998864
No 374
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=33.39 E-value=13 Score=33.52 Aligned_cols=15 Identities=33% Similarity=0.461 Sum_probs=12.3
Q ss_pred EEeeCCCCCCcccee
Q 047385 82 VITYGQTGAGKTFSM 96 (483)
Q Consensus 82 i~ayG~tgSGKT~Tm 96 (483)
|+-.|+.|||||+..
T Consensus 3 I~l~G~~GsGKsT~a 17 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQG 17 (216)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 566899999998763
No 375
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=33.36 E-value=15 Score=39.78 Aligned_cols=31 Identities=26% Similarity=0.329 Sum_probs=20.9
Q ss_pred CchHHHHHHHHHHHHHHhhcCcceEEEeeCCCCCCcccee
Q 047385 57 SEQAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 57 ~~Q~~vf~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm 96 (483)
.-|.+++... +.+|.| ++..|+||||||...
T Consensus 33 ~~Q~~~i~~~-------~~~~~~--~lv~apTGsGKT~~~ 63 (715)
T 2va8_A 33 PPQTEAVKKG-------LLEGNR--LLLTSPTGSGKTLIA 63 (715)
T ss_dssp HHHHHHHHTT-------TTTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHHHHH-------hcCCCc--EEEEcCCCCcHHHHH
Confidence 3566666542 235554 567899999999875
No 376
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=33.28 E-value=14 Score=34.06 Aligned_cols=21 Identities=24% Similarity=0.319 Sum_probs=15.8
Q ss_pred cCcceEEEeeCCCCCCcccee
Q 047385 76 NGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 76 ~G~n~ti~ayG~tgSGKT~Tm 96 (483)
+-+...|+-.|+||||||...
T Consensus 31 ~~~g~~ilI~GpsGsGKStLA 51 (205)
T 2qmh_A 31 DIYGLGVLITGDSGVGKSETA 51 (205)
T ss_dssp EETTEEEEEECCCTTTTHHHH
T ss_pred EECCEEEEEECCCCCCHHHHH
Confidence 334456788999999998764
No 377
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=33.28 E-value=12 Score=39.67 Aligned_cols=18 Identities=28% Similarity=0.285 Sum_probs=14.7
Q ss_pred ceEEEeeCCCCCCcccee
Q 047385 79 NGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 79 n~ti~ayG~tgSGKT~Tm 96 (483)
...++-||++|+|||+++
T Consensus 108 g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp SCEEEEESSSSSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 335778999999999875
No 378
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=33.14 E-value=94 Score=20.60 Aligned_cols=32 Identities=19% Similarity=0.311 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047385 410 TITSLQHMVEDLVRAVEELKSENKALKTRIAA 441 (483)
Q Consensus 410 ~~~~~~~~~~~l~~~~~~~~~e~~~l~~~~~~ 441 (483)
.+..|...+-.+-.++..++.+|..|..++..
T Consensus 7 ~mq~LNdrlAsyidkVR~LE~~N~~Le~~i~~ 38 (39)
T 1gk7_A 7 ELQELNDRFANYIDKVRFLEQQNKILLAELEQ 38 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555555666777888888888887754
No 379
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=33.09 E-value=16 Score=32.48 Aligned_cols=20 Identities=35% Similarity=0.486 Sum_probs=15.4
Q ss_pred CcceEEEeeCCCCCCcccee
Q 047385 77 GMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 77 G~n~ti~ayG~tgSGKT~Tm 96 (483)
.....|+-.|..|||||+..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a 37 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQA 37 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 34446888999999999863
No 380
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=33.03 E-value=1.1e+02 Score=27.87 Aligned_cols=35 Identities=23% Similarity=0.247 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 047385 409 QTITSLQHMVEDLVRAVEELKSENKALKTRIAAAG 443 (483)
Q Consensus 409 ~~~~~~~~~~~~l~~~~~~~~~e~~~l~~~~~~~~ 443 (483)
+....|.+.++.++..+..++.||+.|+.=++.++
T Consensus 115 eEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q 149 (209)
T 2wvr_A 115 KENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQ 149 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666667777777777666555543
No 381
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=32.88 E-value=13 Score=41.18 Aligned_cols=15 Identities=40% Similarity=0.658 Sum_probs=12.5
Q ss_pred EEEeeCCCCCCccce
Q 047385 81 TVITYGQTGAGKTFS 95 (483)
Q Consensus 81 ti~ayG~tgSGKT~T 95 (483)
.++..|+||||||..
T Consensus 111 ~vii~gpTGSGKTtl 125 (773)
T 2xau_A 111 IMVFVGETGSGKTTQ 125 (773)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 456789999999993
No 382
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=32.79 E-value=16 Score=24.06 Aligned_cols=29 Identities=24% Similarity=0.398 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 047385 417 MVEDLVRAVEELKSENKALKTRIAAAGKI 445 (483)
Q Consensus 417 ~~~~l~~~~~~~~~e~~~l~~~~~~~~~~ 445 (483)
.++.++++++.++.+.+.+..++..++..
T Consensus 5 ~i~avKkKiq~lq~q~d~aee~~~~~~~~ 33 (37)
T 3azd_A 5 SLEAVRRKIRSLQEQNYHLENEVARLKKL 33 (37)
T ss_dssp -CHHHHHHHHHHHHHTTTTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678889999998888888888887765
No 383
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=32.46 E-value=17 Score=35.55 Aligned_cols=17 Identities=18% Similarity=0.157 Sum_probs=13.6
Q ss_pred eEEEeeCCCCCCcccee
Q 047385 80 GTVITYGQTGAGKTFSM 96 (483)
Q Consensus 80 ~ti~ayG~tgSGKT~Tm 96 (483)
-.|--.|++|||||+++
T Consensus 91 ~ivgI~G~sGsGKSTL~ 107 (312)
T 3aez_A 91 FIIGVAGSVAVGKSTTA 107 (312)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred EEEEEECCCCchHHHHH
Confidence 34556799999999886
No 384
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=32.24 E-value=16 Score=41.83 Aligned_cols=33 Identities=24% Similarity=0.180 Sum_probs=22.2
Q ss_pred cCCCchHHHHHHHHHHHHHHhhcCcceEEEeeCCCCCCcccee
Q 047385 54 YEKSEQAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 54 ~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm 96 (483)
.+..-|.+.+.. +..|.+ ++..++||||||...
T Consensus 86 ~L~~~Q~eai~~--------l~~g~~--vLV~apTGSGKTlva 118 (1010)
T 2xgj_A 86 TLDPFQDTAISC--------IDRGES--VLVSAHTSAGKTVVA 118 (1010)
T ss_dssp CCCHHHHHHHHH--------HHHTCE--EEEECCTTSCHHHHH
T ss_pred CCCHHHHHHHHH--------HHcCCC--EEEECCCCCChHHHH
Confidence 344556655544 345665 677899999999863
No 385
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=32.21 E-value=14 Score=32.29 Aligned_cols=14 Identities=36% Similarity=0.479 Sum_probs=11.8
Q ss_pred EEeeCCCCCCccce
Q 047385 82 VITYGQTGAGKTFS 95 (483)
Q Consensus 82 i~ayG~tgSGKT~T 95 (483)
|.-.|..|||||+.
T Consensus 3 I~l~G~~GsGKsT~ 16 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQ 16 (195)
T ss_dssp EEEECSTTSCHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 56789999999865
No 386
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=31.99 E-value=14 Score=33.01 Aligned_cols=16 Identities=38% Similarity=0.322 Sum_probs=12.8
Q ss_pred EEEeeCCCCCCcccee
Q 047385 81 TVITYGQTGAGKTFSM 96 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm 96 (483)
.|.-.|+.|||||+..
T Consensus 4 ~i~l~G~~GsGKST~~ 19 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIA 19 (206)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3566899999999764
No 387
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=31.94 E-value=1.1e+02 Score=23.57 Aligned_cols=28 Identities=25% Similarity=0.330 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047385 413 SLQHMVEDLVRAVEELKSENKALKTRIA 440 (483)
Q Consensus 413 ~~~~~~~~l~~~~~~~~~e~~~l~~~~~ 440 (483)
.|.+.++.++..|..++.+|..|+.=+.
T Consensus 38 ~Lh~~ie~~~eEi~~LkeEN~~L~el~~ 65 (79)
T 2zxx_A 38 KLHKEIEQKDSEIARLRKENKDLAEVAE 65 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555544333
No 388
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=31.78 E-value=58 Score=19.33 Aligned_cols=18 Identities=44% Similarity=0.447 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 047385 427 ELKSENKALKTRIAAAGK 444 (483)
Q Consensus 427 ~~~~e~~~l~~~~~~~~~ 444 (483)
.+++.|.+|++++.+++.
T Consensus 4 rlkqknarlkqeiaaley 21 (28)
T 3ra3_B 4 RLKQKNARLKQEIAALEY 21 (28)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHH
Confidence 344455555555555543
No 389
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=31.77 E-value=15 Score=36.51 Aligned_cols=15 Identities=33% Similarity=0.538 Sum_probs=13.1
Q ss_pred EEEeeCCCCCCccce
Q 047385 81 TVITYGQTGAGKTFS 95 (483)
Q Consensus 81 ti~ayG~tgSGKT~T 95 (483)
.|+-.|+||||||..
T Consensus 42 lIvI~GPTgsGKTtL 56 (339)
T 3a8t_A 42 LLVLMGATGTGKSRL 56 (339)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 678899999999865
No 390
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=31.74 E-value=14 Score=32.74 Aligned_cols=16 Identities=25% Similarity=0.345 Sum_probs=13.2
Q ss_pred EEEeeCCCCCCcccee
Q 047385 81 TVITYGQTGAGKTFSM 96 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm 96 (483)
.|+-.|..|||||+..
T Consensus 6 ~I~i~G~~GsGKsT~~ 21 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQA 21 (213)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5777899999998763
No 391
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=31.64 E-value=14 Score=32.51 Aligned_cols=15 Identities=33% Similarity=0.629 Sum_probs=12.3
Q ss_pred EEeeCCCCCCcccee
Q 047385 82 VITYGQTGAGKTFSM 96 (483)
Q Consensus 82 i~ayG~tgSGKT~Tm 96 (483)
|.-.|..|||||+..
T Consensus 3 I~i~G~~GsGKsT~~ 17 (205)
T 2jaq_A 3 IAIFGTVGAGKSTIS 17 (205)
T ss_dssp EEEECCTTSCHHHHH
T ss_pred EEEECCCccCHHHHH
Confidence 567899999998753
No 392
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=31.61 E-value=12 Score=40.06 Aligned_cols=19 Identities=26% Similarity=0.564 Sum_probs=15.1
Q ss_pred eEEEeeCCCCCCccceecC
Q 047385 80 GTVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 80 ~ti~ayG~tgSGKT~Tm~G 98 (483)
.-++..|.||||||+.+-.
T Consensus 215 pHlLIaG~TGSGKS~~L~t 233 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGVNA 233 (574)
T ss_dssp CCEEEECCTTSSHHHHHHH
T ss_pred CeeEEECCCCCCHHHHHHH
Confidence 3467799999999998743
No 393
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=31.24 E-value=20 Score=34.77 Aligned_cols=25 Identities=8% Similarity=-0.122 Sum_probs=18.2
Q ss_pred HHhhcCcceEEEeeCCCCCCcccee
Q 047385 72 RDAFNGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 72 ~~~l~G~n~ti~ayG~tgSGKT~Tm 96 (483)
..+-.|..-.++-||+.|+|||.+.
T Consensus 11 ~~i~~~~~~~~Lf~Gp~G~GKtt~a 35 (305)
T 2gno_A 11 RIIEKSEGISILINGEDLSYPREVS 35 (305)
T ss_dssp HHHHTCSSEEEEEECSSSSHHHHHH
T ss_pred HHHHCCCCcEEEEECCCCCCHHHHH
Confidence 3333566556788999999998765
No 394
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=31.08 E-value=16 Score=31.35 Aligned_cols=15 Identities=27% Similarity=0.448 Sum_probs=12.6
Q ss_pred EEEeeCCCCCCccce
Q 047385 81 TVITYGQTGAGKTFS 95 (483)
Q Consensus 81 ti~ayG~tgSGKT~T 95 (483)
.|+-.|..|||||+.
T Consensus 9 ~i~l~G~~GsGKSTv 23 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSL 23 (168)
T ss_dssp EEEEESCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 467789999999875
No 395
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=31.05 E-value=13 Score=40.31 Aligned_cols=31 Identities=39% Similarity=0.400 Sum_probs=21.8
Q ss_pred CCchHHHHHHHHHHHHHHhhcCcceEEEeeCCCCCCcccee
Q 047385 56 KSEQAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 56 ~~~Q~~vf~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm 96 (483)
..-|.+++.. +++|.| ++..|+||||||...
T Consensus 27 ~~~Q~~~i~~--------i~~~~~--~lv~apTGsGKT~~~ 57 (702)
T 2p6r_A 27 FPPQAEAVEK--------VFSGKN--LLLAMPTAAGKTLLA 57 (702)
T ss_dssp CCCCHHHHHH--------HTTCSC--EEEECSSHHHHHHHH
T ss_pred CHHHHHHHHH--------HhCCCc--EEEEcCCccHHHHHH
Confidence 3457777655 235665 466899999999875
No 396
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=31.00 E-value=73 Score=22.63 Aligned_cols=20 Identities=20% Similarity=0.378 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 047385 412 TSLQHMVEDLVRAVEELKSE 431 (483)
Q Consensus 412 ~~~~~~~~~l~~~~~~~~~e 431 (483)
.+|++.++.|...+++++..
T Consensus 29 ~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 29 AEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555443
No 397
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=30.97 E-value=2.7e+02 Score=25.74 Aligned_cols=31 Identities=19% Similarity=0.244 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcC
Q 047385 414 LQHMVEDLVRAVEELKSEN-KALKTRIAAAGK 444 (483)
Q Consensus 414 ~~~~~~~l~~~~~~~~~e~-~~l~~~~~~~~~ 444 (483)
+.+.+++++.++.-+-.+. .+++..++.++.
T Consensus 108 ~~~~~eelr~~L~P~~eel~~~~~~~~eel~~ 139 (243)
T 2a01_A 108 WQEEMELYRQKVEPLRAELQEGARQKLHELQE 139 (243)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 3445555555554443333 234555555554
No 398
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=30.96 E-value=14 Score=33.80 Aligned_cols=17 Identities=29% Similarity=0.391 Sum_probs=13.9
Q ss_pred eEEEeeCCCCCCcccee
Q 047385 80 GTVITYGQTGAGKTFSM 96 (483)
Q Consensus 80 ~ti~ayG~tgSGKT~Tm 96 (483)
..|+-.|..|||||+..
T Consensus 17 ~~I~l~G~~GsGKsT~a 33 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQA 33 (233)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45778999999999763
No 399
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=30.88 E-value=14 Score=36.23 Aligned_cols=16 Identities=19% Similarity=0.314 Sum_probs=13.2
Q ss_pred EEEeeCCCCCCcccee
Q 047385 81 TVITYGQTGAGKTFSM 96 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm 96 (483)
++.-+|++|||||+.+
T Consensus 128 ~vaIvGpsGsGKSTLl 143 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLC 143 (305)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 4556899999999876
No 400
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=30.77 E-value=14 Score=33.27 Aligned_cols=14 Identities=21% Similarity=0.434 Sum_probs=11.8
Q ss_pred EEeeCCCCCCccce
Q 047385 82 VITYGQTGAGKTFS 95 (483)
Q Consensus 82 i~ayG~tgSGKT~T 95 (483)
++.+|.+|||||.-
T Consensus 2 ilV~Gg~~SGKS~~ 15 (180)
T 1c9k_A 2 ILVTGGARSGKSRH 15 (180)
T ss_dssp EEEEECTTSSHHHH
T ss_pred EEEECCCCCcHHHH
Confidence 67899999999753
No 401
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=30.71 E-value=26 Score=33.81 Aligned_cols=17 Identities=18% Similarity=0.221 Sum_probs=13.6
Q ss_pred eEEEeeCCCCCCcccee
Q 047385 80 GTVITYGQTGAGKTFSM 96 (483)
Q Consensus 80 ~ti~ayG~tgSGKT~Tm 96 (483)
..|--.|++|||||+++
T Consensus 81 ~iigI~G~~GsGKSTl~ 97 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTA 97 (308)
T ss_dssp EEEEEEECTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 45556799999999875
No 402
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=30.56 E-value=13 Score=32.39 Aligned_cols=19 Identities=26% Similarity=0.401 Sum_probs=15.2
Q ss_pred cceEEEeeCCCCCCcccee
Q 047385 78 MNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 78 ~n~ti~ayG~tgSGKT~Tm 96 (483)
....|+..|.+|+|||..+
T Consensus 47 ~~~~i~vvG~~g~GKSsll 65 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLL 65 (193)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3347889999999999765
No 403
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=30.41 E-value=13 Score=39.25 Aligned_cols=17 Identities=24% Similarity=0.581 Sum_probs=13.8
Q ss_pred EEEeeCCCCCCccceec
Q 047385 81 TVITYGQTGAGKTFSME 97 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm~ 97 (483)
-++..|.||||||..+-
T Consensus 169 HlLIaG~TGSGKSt~L~ 185 (512)
T 2ius_A 169 HLLVAGTTGSGASVGVN 185 (512)
T ss_dssp SEEEECCTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 35678999999998763
No 404
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=30.31 E-value=14 Score=34.63 Aligned_cols=16 Identities=38% Similarity=0.609 Sum_probs=12.9
Q ss_pred EEEeeCCCCCCcccee
Q 047385 81 TVITYGQTGAGKTFSM 96 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm 96 (483)
.+.-.|++|||||+.+
T Consensus 26 ~~~liG~nGsGKSTLl 41 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFL 41 (240)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3456799999999876
No 405
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=30.27 E-value=14 Score=34.43 Aligned_cols=15 Identities=40% Similarity=0.603 Sum_probs=12.4
Q ss_pred EEeeCCCCCCcccee
Q 047385 82 VITYGQTGAGKTFSM 96 (483)
Q Consensus 82 i~ayG~tgSGKT~Tm 96 (483)
+.-.|++|||||+.+
T Consensus 34 ~~i~G~nGsGKSTLl 48 (237)
T 2cbz_A 34 VAVVGQVGCGKSSLL 48 (237)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 455799999999875
No 406
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=30.27 E-value=57 Score=20.90 Aligned_cols=27 Identities=15% Similarity=0.132 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 047385 418 VEDLVRAVEELKSENKALKTRIAAAGK 444 (483)
Q Consensus 418 ~~~l~~~~~~~~~e~~~l~~~~~~~~~ 444 (483)
+.+|..+++++-.++..|+.+.+.+..
T Consensus 3 MnQLEdKVEeLl~~~~~Le~EV~RLk~ 29 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXENEXARIXK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 556777778888888777777766543
No 407
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=30.22 E-value=21 Score=38.03 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=16.7
Q ss_pred HhhcCcceEEEeeCCCCCCcccee
Q 047385 73 DAFNGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 73 ~~l~G~n~ti~ayG~tgSGKT~Tm 96 (483)
.+-.|. .++-+|++|+|||+++
T Consensus 56 ~i~~g~--~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 56 AANQKR--HVLLIGEPGTGKSMLG 77 (604)
T ss_dssp HHHTTC--CEEEECCTTSSHHHHH
T ss_pred cccCCC--EEEEEeCCCCCHHHHH
Confidence 334564 5677999999999886
No 408
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=30.20 E-value=17 Score=35.87 Aligned_cols=17 Identities=29% Similarity=0.389 Sum_probs=13.5
Q ss_pred eEEEeeCCCCCCcccee
Q 047385 80 GTVITYGQTGAGKTFSM 96 (483)
Q Consensus 80 ~ti~ayG~tgSGKT~Tm 96 (483)
-.|+..|+||||||...
T Consensus 11 ~~i~i~GptgsGKt~la 27 (316)
T 3foz_A 11 KAIFLMGPTASGKTALA 27 (316)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEECCCccCHHHHH
Confidence 35777999999998653
No 409
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=30.19 E-value=18 Score=36.11 Aligned_cols=30 Identities=30% Similarity=0.220 Sum_probs=22.2
Q ss_pred HHHHHHhhc--Ccc--eEEEeeCCCCCCccceec
Q 047385 68 LPIIRDAFN--GMN--GTVITYGQTGAGKTFSME 97 (483)
Q Consensus 68 ~plv~~~l~--G~n--~ti~ayG~tgSGKT~Tm~ 97 (483)
-+-+|.++. |+. ..+.-||++|||||+.+.
T Consensus 46 ~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal 79 (356)
T 3hr8_A 46 SLAIDIATGVGGYPRGRIVEIFGQESSGKTTLAL 79 (356)
T ss_dssp CHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHH
T ss_pred CHHHHHHhccCCccCCcEEEEECCCCCCHHHHHH
Confidence 456778776 443 467889999999998753
No 410
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=30.16 E-value=13 Score=34.38 Aligned_cols=15 Identities=33% Similarity=0.572 Sum_probs=12.0
Q ss_pred EEeeCCCCCCcccee
Q 047385 82 VITYGQTGAGKTFSM 96 (483)
Q Consensus 82 i~ayG~tgSGKT~Tm 96 (483)
+.-.|++|||||+.+
T Consensus 33 ~~iiG~nGsGKSTLl 47 (224)
T 2pcj_A 33 VSIIGASGSGKSTLL 47 (224)
T ss_dssp EEEEECTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 345699999999875
No 411
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=30.16 E-value=2.9e+02 Score=24.41 Aligned_cols=25 Identities=8% Similarity=0.113 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 047385 415 QHMVEDLVRAVEELKSENKALKTRI 439 (483)
Q Consensus 415 ~~~~~~l~~~~~~~~~e~~~l~~~~ 439 (483)
++.+.+|+.++..++.....|..++
T Consensus 47 E~~~rELq~~~~~L~~~k~~Leke~ 71 (168)
T 3o0z_A 47 ESLNRELQERNRILENSKSQTDKDY 71 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444443333333333
No 412
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=30.12 E-value=14 Score=32.82 Aligned_cols=16 Identities=25% Similarity=0.343 Sum_probs=12.8
Q ss_pred EEEeeCCCCCCcccee
Q 047385 81 TVITYGQTGAGKTFSM 96 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm 96 (483)
.|.-.|..|||||+..
T Consensus 3 ~i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 3667899999998753
No 413
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=30.03 E-value=16 Score=33.12 Aligned_cols=16 Identities=31% Similarity=0.530 Sum_probs=12.8
Q ss_pred EEEeeCCCCCCcccee
Q 047385 81 TVITYGQTGAGKTFSM 96 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm 96 (483)
..+-+|++|||||..|
T Consensus 25 ~~~I~G~NgsGKStil 40 (203)
T 3qks_A 25 INLIIGQNGSGKSSLL 40 (203)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEEcCCCCCHHHHH
Confidence 3356899999999876
No 414
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=29.87 E-value=23 Score=37.28 Aligned_cols=35 Identities=20% Similarity=0.087 Sum_probs=22.2
Q ss_pred CchHHHHHHHHHHHHHHhhcCcceEEEeeCCCCCCccceec
Q 047385 57 SEQAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSME 97 (483)
Q Consensus 57 ~~Q~~vf~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm~ 97 (483)
..|.++...+. +.+..|.++ ++-.+||||||.+..
T Consensus 6 ~~Q~~~~~~v~----~~l~~~~~~--~~~a~TGtGKT~~~l 40 (551)
T 3crv_A 6 DWQEKLKDKVI----EGLRNNFLV--ALNAPTGSGKTLFSL 40 (551)
T ss_dssp HHHHHHHHHHH----HHHHTTCEE--EEECCTTSSHHHHHH
T ss_pred HHHHHHHHHHH----HHHHcCCcE--EEECCCCccHHHHHH
Confidence 34555554433 444567654 556789999998763
No 415
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=29.87 E-value=24 Score=37.86 Aligned_cols=38 Identities=26% Similarity=0.354 Sum_probs=24.0
Q ss_pred ecCCCchHHHHHHHHHHHHHHhhcCcceEEEeeCCCCCCcccee
Q 047385 53 FYEKSEQAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 53 f~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm 96 (483)
|.+-..|.++-..+... +.+|.+ +++-.+||+|||.+.
T Consensus 2 ~~~R~~Q~~~~~~v~~~----l~~~~~--~~~~apTGtGKT~a~ 39 (620)
T 4a15_A 2 YENRQYQVEAIDFLRSS----LQKSYG--VALESPTGSGKTIMA 39 (620)
T ss_dssp ---CHHHHHHHHHHHHH----HHHSSE--EEEECCTTSCHHHHH
T ss_pred CCCCHHHHHHHHHHHHH----HHcCCC--EEEECCCCCCHHHHH
Confidence 44556677776665433 335655 567889999999774
No 416
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=29.83 E-value=14 Score=33.41 Aligned_cols=16 Identities=25% Similarity=0.364 Sum_probs=13.2
Q ss_pred EEEeeCCCCCCcccee
Q 047385 81 TVITYGQTGAGKTFSM 96 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm 96 (483)
.|+-.|+.|||||+..
T Consensus 7 ~I~l~G~~GsGKsT~~ 22 (222)
T 1zak_A 7 KVMISGAPASGKGTQC 22 (222)
T ss_dssp CEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4777899999998753
No 417
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=29.81 E-value=69 Score=22.98 Aligned_cols=22 Identities=9% Similarity=0.184 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 047385 422 VRAVEELKSENKALKTRIAAAG 443 (483)
Q Consensus 422 ~~~~~~~~~e~~~l~~~~~~~~ 443 (483)
...++.+..+|..|+.++..++
T Consensus 33 ~~~~~~l~~e~~~L~~~~~~l~ 54 (57)
T 2wuj_A 33 RKDYEIVLRKKTELEAKVNELD 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555554443
No 418
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=29.75 E-value=17 Score=32.77 Aligned_cols=16 Identities=31% Similarity=0.407 Sum_probs=13.2
Q ss_pred EEEeeCCCCCCcccee
Q 047385 81 TVITYGQTGAGKTFSM 96 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm 96 (483)
.|.-.|++|||||+..
T Consensus 7 ~i~i~G~~GsGKSTl~ 22 (227)
T 1cke_A 7 VITIDGPSGAGKGTLC 22 (227)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5667899999998764
No 419
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=29.66 E-value=20 Score=41.40 Aligned_cols=22 Identities=32% Similarity=0.302 Sum_probs=16.8
Q ss_pred HHhhcCcceEEEeeCCCCCCccce
Q 047385 72 RDAFNGMNGTVITYGQTGAGKTFS 95 (483)
Q Consensus 72 ~~~l~G~n~ti~ayG~tgSGKT~T 95 (483)
..++.|.+ ++..|+||||||..
T Consensus 194 ~~i~~g~d--vLV~ApTGSGKTlv 215 (1108)
T 3l9o_A 194 SCIDRGES--VLVSAHTSAGKTVV 215 (1108)
T ss_dssp HHHTTTCC--EEEECCSSSHHHHH
T ss_pred HHHHcCCC--EEEECCCCCChHHH
Confidence 34467765 47799999999975
No 420
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=29.66 E-value=12 Score=31.02 Aligned_cols=16 Identities=25% Similarity=0.463 Sum_probs=13.3
Q ss_pred EEEeeCCCCCCcccee
Q 047385 81 TVITYGQTGAGKTFSM 96 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm 96 (483)
-|+..|.+|+|||..+
T Consensus 5 ~i~v~G~~~~GKssl~ 20 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALT 20 (166)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778899999999764
No 421
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=29.63 E-value=81 Score=20.10 Aligned_cols=27 Identities=11% Similarity=0.183 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 047385 418 VEDLVRAVEELKSENKALKTRIAAAGK 444 (483)
Q Consensus 418 ~~~l~~~~~~~~~e~~~l~~~~~~~~~ 444 (483)
+.+|..+++++..+|..|+.+++.+..
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk~ 28 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIKX 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 456677788888888888777766543
No 422
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=29.61 E-value=16 Score=36.51 Aligned_cols=14 Identities=36% Similarity=0.579 Sum_probs=11.7
Q ss_pred EeeCCCCCCcccee
Q 047385 83 ITYGQTGAGKTFSM 96 (483)
Q Consensus 83 ~ayG~tgSGKT~Tm 96 (483)
+-+|++|||||..+
T Consensus 27 ~i~G~NGaGKTTll 40 (365)
T 3qf7_A 27 VVEGPNGAGKSSLF 40 (365)
T ss_dssp EEECCTTSSHHHHH
T ss_pred EEECCCCCCHHHHH
Confidence 35999999999765
No 423
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=29.54 E-value=15 Score=34.72 Aligned_cols=15 Identities=27% Similarity=0.569 Sum_probs=12.3
Q ss_pred EEeeCCCCCCcccee
Q 047385 82 VITYGQTGAGKTFSM 96 (483)
Q Consensus 82 i~ayG~tgSGKT~Tm 96 (483)
+.-.|++|||||+.+
T Consensus 36 ~~liG~nGsGKSTLl 50 (257)
T 1g6h_A 36 TLIIGPNGSGKSTLI 50 (257)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 345799999999876
No 424
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=29.47 E-value=1e+02 Score=23.84 Aligned_cols=34 Identities=12% Similarity=0.175 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchh
Q 047385 414 LQHMVEDLVRAVEELKSENKALKTRIAAAGKIDA 447 (483)
Q Consensus 414 ~~~~~~~l~~~~~~~~~e~~~l~~~~~~~~~~~~ 447 (483)
.+..+.+...+.+++..+.++|+.++..++.+++
T Consensus 43 ~eskL~eae~rn~eL~~e~~~l~~~~eelq~~~~ 76 (81)
T 1wt6_A 43 FASQLREAEARNRDLEAHVRQLQERMELLQAEGA 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccch
Confidence 3445566677777788888888888888765543
No 425
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=29.37 E-value=16 Score=31.93 Aligned_cols=15 Identities=27% Similarity=0.485 Sum_probs=12.2
Q ss_pred EEeeCCCCCCcccee
Q 047385 82 VITYGQTGAGKTFSM 96 (483)
Q Consensus 82 i~ayG~tgSGKT~Tm 96 (483)
|.-.|..|||||+..
T Consensus 3 I~l~G~~GsGKsT~~ 17 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQI 17 (197)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 566899999998763
No 426
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=29.37 E-value=1.1e+02 Score=25.70 Aligned_cols=28 Identities=21% Similarity=0.439 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047385 414 LQHMVEDLVRAVEELKSENKALKTRIAA 441 (483)
Q Consensus 414 ~~~~~~~l~~~~~~~~~e~~~l~~~~~~ 441 (483)
+...+..|+-.++.++..+..|...+..
T Consensus 41 lrr~iq~L~~el~~l~~~~~~LE~~l~e 68 (129)
T 3tnu_B 41 MNRMIQRLRAEIDNVKKQCANLQNAIAD 68 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3333334444444444444444444433
No 427
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=29.32 E-value=2.3e+02 Score=36.58 Aligned_cols=100 Identities=15% Similarity=0.240 Sum_probs=0.0
Q ss_pred HHHHHhHHHHHHHHHHHHhcccccCCCchhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchh
Q 047385 368 LRERLDVENVNLLEELFIMEGIILDPNSVEDLDLAFEDVTLQTITSLQHMVEDLVRAVEELKSENKALKTRIAAAGKIDA 447 (483)
Q Consensus 368 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~l~~~~~~~~~~~~ 447 (483)
+|+++.+.+.++.+....+. .....+.+. ...+.+|+...++...+.+.++.+.+..+.+++.++.=-+
T Consensus 2012 kr~~l~~ae~~l~~~~~~L~----------~~~~~L~~l-e~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~ 2080 (3245)
T 3vkg_A 2012 LREEVEQLENAANELKLKQD----------EIVATITAL-EKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLD 2080 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----------HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----------HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhcchhhHHHHHHHHHhhhhcc----------ccccccc
Q 047385 448 FHKEAGENGYASIVHKISDRLSHLV----------SWIWPFS 479 (483)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~ 479 (483)
.+ +.+..-..+.+..+..++..|. +|.-+|+
T Consensus 2081 gL-~~Ek~RW~~~~~~l~~~~~~L~GD~LLaaafisY~G~f~ 2121 (3245)
T 3vkg_A 2081 NL-NSERGRWEQQSENFNTQMSTVVGDVVLASAFLAYIGFFD 2121 (3245)
T ss_dssp HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGSC
T ss_pred hh-hhccccHHHHHHHHHHHHHhccHHHHHHHHHHHHcCCCC
No 428
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=29.25 E-value=1.2e+02 Score=19.62 Aligned_cols=21 Identities=24% Similarity=0.469 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 047385 422 VRAVEELKSENKALKTRIAAA 442 (483)
Q Consensus 422 ~~~~~~~~~e~~~l~~~~~~~ 442 (483)
+.-|++++..|..|++++-.|
T Consensus 13 qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 13 QQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HhhHHHHHHHHHHHHHHHHhc
Confidence 334455555566666655443
No 429
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=29.22 E-value=15 Score=34.26 Aligned_cols=15 Identities=47% Similarity=0.691 Sum_probs=12.3
Q ss_pred EEeeCCCCCCcccee
Q 047385 82 VITYGQTGAGKTFSM 96 (483)
Q Consensus 82 i~ayG~tgSGKT~Tm 96 (483)
+.-.|+.|||||+.+
T Consensus 35 ~~l~G~nGsGKSTLl 49 (240)
T 1ji0_A 35 VTLIGANGAGKTTTL 49 (240)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 345799999999876
No 430
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=29.21 E-value=15 Score=35.27 Aligned_cols=14 Identities=29% Similarity=0.477 Sum_probs=11.8
Q ss_pred EeeCCCCCCcccee
Q 047385 83 ITYGQTGAGKTFSM 96 (483)
Q Consensus 83 ~ayG~tgSGKT~Tm 96 (483)
.-.|++|||||+.+
T Consensus 38 ~iiGpnGsGKSTLl 51 (275)
T 3gfo_A 38 AILGGNGVGKSTLF 51 (275)
T ss_dssp EEECCTTSSHHHHH
T ss_pred EEECCCCCCHHHHH
Confidence 44799999999886
No 431
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=29.19 E-value=15 Score=32.65 Aligned_cols=16 Identities=25% Similarity=0.264 Sum_probs=12.8
Q ss_pred EEEeeCCCCCCcccee
Q 047385 81 TVITYGQTGAGKTFSM 96 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm 96 (483)
.+.-.|.+|||||..+
T Consensus 8 ~i~i~G~sGsGKTTl~ 23 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLL 23 (174)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEeCCCCCHHHHH
Confidence 3556799999998876
No 432
>1a93_A Coiled coil, LZ, MYC proto-oncogene protein; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Homo sapiens} SCOP: h.1.3.1 PDB: 2a93_A
Probab=29.07 E-value=91 Score=20.15 Aligned_cols=27 Identities=15% Similarity=0.272 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047385 416 HMVEDLVRAVEELKSENKALKTRIAAA 442 (483)
Q Consensus 416 ~~~~~l~~~~~~~~~e~~~l~~~~~~~ 442 (483)
.....|....+.++..++.|+.+++++
T Consensus 7 ~dE~kLl~ekE~l~~r~eqL~~kLe~L 33 (34)
T 1a93_A 7 AEEQKLISEEDLLRKRREQLKHKLEQL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333455566667777788888888765
No 433
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=28.96 E-value=23 Score=40.82 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=18.4
Q ss_pred HHHHhhcCcceEEEeeCCCCCCccce
Q 047385 70 IIRDAFNGMNGTVITYGQTGAGKTFS 95 (483)
Q Consensus 70 lv~~~l~G~n~ti~ayG~tgSGKT~T 95 (483)
.+..++.|.| +++.++||||||..
T Consensus 86 ai~~il~g~d--vlv~ApTGSGKTl~ 109 (1104)
T 4ddu_A 86 WAKRIVQGKS--FTMVAPTGVGKTTF 109 (1104)
T ss_dssp HHHHHTTTCC--EEECCSTTCCHHHH
T ss_pred HHHHHHcCCC--EEEEeCCCCcHHHH
Confidence 3455667876 56789999999983
No 434
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=28.94 E-value=15 Score=36.00 Aligned_cols=17 Identities=35% Similarity=0.540 Sum_probs=14.0
Q ss_pred EEEeeCCCCCCccceec
Q 047385 81 TVITYGQTGAGKTFSME 97 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm~ 97 (483)
.|...|++|+|||+|+.
T Consensus 107 vI~ivG~~G~GKTT~~~ 123 (320)
T 1zu4_A 107 IFMLVGVNGTGKTTSLA 123 (320)
T ss_dssp EEEEESSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46667999999999874
No 435
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=28.85 E-value=19 Score=35.63 Aligned_cols=18 Identities=33% Similarity=0.414 Sum_probs=14.6
Q ss_pred EEEeeCCCCCCccceecC
Q 047385 81 TVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm~G 98 (483)
.++-||++|+|||+....
T Consensus 125 viLI~GpPGsGKTtLAlq 142 (331)
T 2vhj_A 125 MVIVTGKGNSGKTPLVHA 142 (331)
T ss_dssp EEEEECSCSSSHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHH
Confidence 457799999999987643
No 436
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=28.85 E-value=14 Score=40.45 Aligned_cols=20 Identities=25% Similarity=0.478 Sum_probs=16.2
Q ss_pred ceEEEeeCCCCCCccceecC
Q 047385 79 NGTVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 79 n~ti~ayG~tgSGKT~Tm~G 98 (483)
++.++..|..|||||++|..
T Consensus 24 ~g~~lV~AgAGSGKT~vL~~ 43 (724)
T 1pjr_A 24 EGPLLIMAGAGSGKTRVLTH 43 (724)
T ss_dssp SSCEEEEECTTSCHHHHHHH
T ss_pred CCCEEEEEcCCCCHHHHHHH
Confidence 45677789999999999854
No 437
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=28.82 E-value=14 Score=30.70 Aligned_cols=16 Identities=25% Similarity=0.451 Sum_probs=12.9
Q ss_pred EEEeeCCCCCCcccee
Q 047385 81 TVITYGQTGAGKTFSM 96 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm 96 (483)
.|+..|.+|+|||..+
T Consensus 3 ki~v~G~~~~GKSsli 18 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLF 18 (161)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3677899999999754
No 438
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=28.78 E-value=14 Score=33.95 Aligned_cols=14 Identities=36% Similarity=0.389 Sum_probs=11.8
Q ss_pred EeeCCCCCCcccee
Q 047385 83 ITYGQTGAGKTFSM 96 (483)
Q Consensus 83 ~ayG~tgSGKT~Tm 96 (483)
.-.|+.|||||+.|
T Consensus 39 ~iiG~NGsGKSTLl 52 (214)
T 1sgw_A 39 NFHGPNGIGKTTLL 52 (214)
T ss_dssp EEECCTTSSHHHHH
T ss_pred EEECCCCCCHHHHH
Confidence 34799999999876
No 439
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=28.67 E-value=3.8e+02 Score=25.35 Aligned_cols=111 Identities=12% Similarity=0.121 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccCCCchhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q 047385 359 ESMERILNKLRERLDVENVNLLEELFIMEGIILDPNSVEDLDLAFEDVTLQTITSLQHMVEDLVRAVEELKSENKA-LKT 437 (483)
Q Consensus 359 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~-l~~ 437 (483)
..+.+-+..+|.+|..-..++...+.. .++++...+.......-..+.+.+++++..+.-.-.+... +..
T Consensus 62 ~~~~~~~eelr~kL~p~~~el~~~l~~---------~~eeLr~~L~p~~eelr~kl~~~veelk~~L~Py~eelr~k~~~ 132 (273)
T 3s84_A 62 TQVNTQAEQLRRQLTPYAQRMERVLRE---------NADSLQASLRPHADELKAKIDQNVEELKGRLTPYADEFKVKIDQ 132 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHh---------hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHhHHHHHHHHHHH
Q ss_pred HHHHhcCchhhhhhhcchhhHHHHHHHH---------------Hhhhhcccccccc
Q 047385 438 RIAAAGKIDAFHKEAGENGYASIVHKIS---------------DRLSHLVSWIWPF 478 (483)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~ 478 (483)
.++.+.+...-........++..+..|. ..+++|+.|+.|+
T Consensus 133 ~leeLr~~l~P~ae~~~~kl~~~~e~L~~ql~~~a~~L~~~l~~~~eeLr~~L~p~ 188 (273)
T 3s84_A 133 TVEELRRSLAPYAQDTQEKLNHQLEGLTFQMKKNAEELKARISASAEELRQRLAPL 188 (273)
T ss_dssp HHHHHHHHHGGGCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 440
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=28.61 E-value=50 Score=31.24 Aligned_cols=37 Identities=22% Similarity=0.294 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Q 047385 410 TITSLQHMVEDLVRAVEELKSENKALKTRIAAAGKID 446 (483)
Q Consensus 410 ~~~~~~~~~~~l~~~~~~~~~e~~~l~~~~~~~~~~~ 446 (483)
.+..+.+..+.|...+++++.|..+||.+++.++++.
T Consensus 62 ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~sPP 98 (251)
T 3m9b_A 62 RIDSLAARNSKLMETLKEARQQLLALREEVDRLGQPP 98 (251)
T ss_dssp HHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4455666667788888888889999999998887653
No 441
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=28.59 E-value=15 Score=34.73 Aligned_cols=15 Identities=27% Similarity=0.558 Sum_probs=12.0
Q ss_pred EEeeCCCCCCcccee
Q 047385 82 VITYGQTGAGKTFSM 96 (483)
Q Consensus 82 i~ayG~tgSGKT~Tm 96 (483)
+.-.|++|||||+.+
T Consensus 35 ~~liG~nGsGKSTLl 49 (262)
T 1b0u_A 35 ISIIGSSGSGKSTFL 49 (262)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 344699999999875
No 442
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=28.58 E-value=27 Score=36.64 Aligned_cols=38 Identities=24% Similarity=0.149 Sum_probs=23.3
Q ss_pred cCCCchHHHHHHHHHHHHHHhhcCcceEEEeeCCCCCCccceec
Q 047385 54 YEKSEQAEVFEFLALPIIRDAFNGMNGTVITYGQTGAGKTFSME 97 (483)
Q Consensus 54 ~~~~~Q~~vf~~~~~plv~~~l~G~n~ti~ayG~tgSGKT~Tm~ 97 (483)
.+-.-|.++...+. ..+..|.++ +.-.+||+|||.+..
T Consensus 7 ~~r~~Q~~~~~~v~----~~~~~~~~~--~~~a~TGtGKT~~~l 44 (540)
T 2vl7_A 7 QLRQWQAEKLGEAI----NALKHGKTL--LLNAKPGLGKTVFVE 44 (540)
T ss_dssp --CCHHHHHHHHHH----HHHHTTCEE--EEECCTTSCHHHHHH
T ss_pred CCCHHHHHHHHHHH----HHHHcCCCE--EEEcCCCCcHHHHHH
Confidence 34456766665544 334467654 556789999998653
No 443
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=28.58 E-value=14 Score=34.90 Aligned_cols=17 Identities=24% Similarity=0.177 Sum_probs=14.1
Q ss_pred EEEeeCCCCCCccceec
Q 047385 81 TVITYGQTGAGKTFSME 97 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm~ 97 (483)
.+.-+|++|||||+.+.
T Consensus 32 i~~i~G~~GsGKTtl~~ 48 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLAL 48 (279)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEEcCCCCCHHHHHH
Confidence 56679999999998763
No 444
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=28.55 E-value=18 Score=35.64 Aligned_cols=16 Identities=38% Similarity=0.380 Sum_probs=12.9
Q ss_pred EEEeeCCCCCCcccee
Q 047385 81 TVITYGQTGAGKTFSM 96 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm 96 (483)
.|+..|+||||||...
T Consensus 5 ~i~i~GptgsGKt~la 20 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTS 20 (322)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCcCCHHHHH
Confidence 4667899999998653
No 445
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=28.48 E-value=16 Score=34.35 Aligned_cols=15 Identities=27% Similarity=0.459 Sum_probs=12.2
Q ss_pred EEeeCCCCCCcccee
Q 047385 82 VITYGQTGAGKTFSM 96 (483)
Q Consensus 82 i~ayG~tgSGKT~Tm 96 (483)
+.-.|++|||||+.+
T Consensus 38 ~~i~G~nGsGKSTLl 52 (247)
T 2ff7_A 38 IGIVGRSGSGKSTLT 52 (247)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 345799999999965
No 446
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=28.48 E-value=16 Score=34.64 Aligned_cols=15 Identities=33% Similarity=0.476 Sum_probs=12.5
Q ss_pred EEeeCCCCCCcccee
Q 047385 82 VITYGQTGAGKTFSM 96 (483)
Q Consensus 82 i~ayG~tgSGKT~Tm 96 (483)
+.-.|++|||||+.+
T Consensus 49 ~~i~G~nGsGKSTLl 63 (260)
T 2ghi_A 49 CALVGHTGSGKSTIA 63 (260)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 456799999999876
No 447
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=28.39 E-value=16 Score=34.16 Aligned_cols=15 Identities=27% Similarity=0.485 Sum_probs=12.4
Q ss_pred EEeeCCCCCCcccee
Q 047385 82 VITYGQTGAGKTFSM 96 (483)
Q Consensus 82 i~ayG~tgSGKT~Tm 96 (483)
+.-.|++|||||+.+
T Consensus 31 ~~i~G~nGsGKSTLl 45 (243)
T 1mv5_A 31 IAFAGPSGGGKSTIF 45 (243)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 455799999999875
No 448
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=28.34 E-value=16 Score=32.96 Aligned_cols=15 Identities=33% Similarity=0.388 Sum_probs=12.4
Q ss_pred EEeeCCCCCCcccee
Q 047385 82 VITYGQTGAGKTFSM 96 (483)
Q Consensus 82 i~ayG~tgSGKT~Tm 96 (483)
|+-.|..|||||+..
T Consensus 3 I~l~G~~GsGKsT~a 17 (214)
T 1e4v_A 3 IILLGAPVAGKGTQA 17 (214)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 677899999998753
No 449
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=28.29 E-value=17 Score=37.59 Aligned_cols=17 Identities=35% Similarity=0.501 Sum_probs=14.3
Q ss_pred eEEEeeCCCCCCcccee
Q 047385 80 GTVITYGQTGAGKTFSM 96 (483)
Q Consensus 80 ~ti~ayG~tgSGKT~Tm 96 (483)
..|+-||++|+|||+..
T Consensus 51 ~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 51 KNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 35888999999999864
No 450
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=28.26 E-value=16 Score=34.70 Aligned_cols=15 Identities=33% Similarity=0.660 Sum_probs=12.3
Q ss_pred EEeeCCCCCCcccee
Q 047385 82 VITYGQTGAGKTFSM 96 (483)
Q Consensus 82 i~ayG~tgSGKT~Tm 96 (483)
+.-.|++|||||+.+
T Consensus 36 ~~liG~nGsGKSTLl 50 (266)
T 2yz2_A 36 LLVAGNTGSGKSTLL 50 (266)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCcHHHHH
Confidence 445799999999876
No 451
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=27.87 E-value=18 Score=33.66 Aligned_cols=17 Identities=35% Similarity=0.593 Sum_probs=13.9
Q ss_pred ceEEEeeCCCCCCccce
Q 047385 79 NGTVITYGQTGAGKTFS 95 (483)
Q Consensus 79 n~ti~ayG~tgSGKT~T 95 (483)
...|+..|+.|||||+.
T Consensus 29 ~~~I~l~G~~GsGKsT~ 45 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQ 45 (243)
T ss_dssp CEEEEEECCTTSSHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 34678899999999865
No 452
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=27.85 E-value=45 Score=31.67 Aligned_cols=27 Identities=4% Similarity=0.001 Sum_probs=18.9
Q ss_pred HHHHHhhcC---cceEEEeeCCCCCCcccee
Q 047385 69 PIIRDAFNG---MNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 69 plv~~~l~G---~n~ti~ayG~tgSGKT~Tm 96 (483)
|-+|.++.| -..+++..|.+|+||| |+
T Consensus 8 ~~LD~~l~GGl~~gs~~li~g~p~~~~~-~l 37 (260)
T 3bs4_A 8 EELDREIGKIKKHSLILIHEEDASSRGK-DI 37 (260)
T ss_dssp HHHHHHHCCBCTTCEEEEEECSGGGCHH-HH
T ss_pred HHHHHHhCCCCCCCcEEEEEeCCCccHH-HH
Confidence 556888866 3556666788888888 54
No 453
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=27.79 E-value=21 Score=38.81 Aligned_cols=17 Identities=24% Similarity=0.300 Sum_probs=13.9
Q ss_pred EEEeeCCCCCCccceec
Q 047385 81 TVITYGQTGAGKTFSME 97 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm~ 97 (483)
.++..|+||||||+.+.
T Consensus 234 ~vlv~ApTGSGKT~a~~ 250 (666)
T 3o8b_A 234 VAHLHAPTGSGKSTKVP 250 (666)
T ss_dssp EEEEECCTTSCTTTHHH
T ss_pred eEEEEeCCchhHHHHHH
Confidence 46778999999997654
No 454
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=27.66 E-value=52 Score=21.13 Aligned_cols=28 Identities=43% Similarity=0.459 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 047385 417 MVEDLVRAVEELKSENKALKTRIAAAGK 444 (483)
Q Consensus 417 ~~~~l~~~~~~~~~e~~~l~~~~~~~~~ 444 (483)
.+.+|..+++++-.+|..|..+.+.|.+
T Consensus 2 RMnQLEdkVEeLl~~~~~Le~eV~RL~~ 29 (34)
T 2hy6_A 2 KVKQLADAVEELASANYHLANAVARLAK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3456777777777777777777766543
No 455
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=27.59 E-value=1.3e+02 Score=27.38 Aligned_cols=36 Identities=17% Similarity=0.184 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 047385 410 TITSLQHMVEDLVRAVEELKSENKALKTRIAAAGKI 445 (483)
Q Consensus 410 ~~~~~~~~~~~l~~~~~~~~~e~~~l~~~~~~~~~~ 445 (483)
.+.+..++-++|...++.++.|+..|+++...|.+-
T Consensus 109 AL~eaLeEN~~Lh~~ie~l~eEi~~LkeEn~eLkeL 144 (209)
T 2wvr_A 109 ALYEALKENEKLHKEIEQKDNEIARLKKENKELAEV 144 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555667777777777777777777776554
No 456
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=27.50 E-value=27 Score=34.29 Aligned_cols=16 Identities=19% Similarity=0.248 Sum_probs=13.0
Q ss_pred EEEeeCCCCCCcccee
Q 047385 81 TVITYGQTGAGKTFSM 96 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm 96 (483)
.|.-.|++|||||+++
T Consensus 94 iigI~GpsGSGKSTl~ 109 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTS 109 (321)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4556699999999875
No 457
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=27.46 E-value=19 Score=34.14 Aligned_cols=17 Identities=29% Similarity=0.454 Sum_probs=13.9
Q ss_pred eEEEeeCCCCCCcccee
Q 047385 80 GTVITYGQTGAGKTFSM 96 (483)
Q Consensus 80 ~ti~ayG~tgSGKT~Tm 96 (483)
..|+..|.+|||||+..
T Consensus 3 ~~I~l~G~~GsGKST~a 19 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWA 19 (301)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35788999999999853
No 458
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=27.36 E-value=17 Score=33.65 Aligned_cols=15 Identities=47% Similarity=0.607 Sum_probs=12.1
Q ss_pred EEeeCCCCCCcccee
Q 047385 82 VITYGQTGAGKTFSM 96 (483)
Q Consensus 82 i~ayG~tgSGKT~Tm 96 (483)
+.-.|+.|||||+.|
T Consensus 37 ~~i~G~nGsGKSTLl 51 (229)
T 2pze_A 37 LAVAGSTGAGKTSLL 51 (229)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 345799999999876
No 459
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=27.31 E-value=17 Score=34.61 Aligned_cols=15 Identities=33% Similarity=0.678 Sum_probs=12.3
Q ss_pred EEeeCCCCCCcccee
Q 047385 82 VITYGQTGAGKTFSM 96 (483)
Q Consensus 82 i~ayG~tgSGKT~Tm 96 (483)
+.-.|+.|||||+.+
T Consensus 53 ~~liG~NGsGKSTLl 67 (263)
T 2olj_A 53 VVVIGPSGSGKSTFL 67 (263)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEEcCCCCcHHHHH
Confidence 345799999999876
No 460
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=27.14 E-value=22 Score=30.81 Aligned_cols=16 Identities=50% Similarity=0.503 Sum_probs=12.6
Q ss_pred EEEeeCCCCCCcccee
Q 047385 81 TVITYGQTGAGKTFSM 96 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm 96 (483)
.|.-.|..|||||+..
T Consensus 7 ~i~l~G~~GsGKST~~ 22 (179)
T 2pez_A 7 TVWLTGLSGAGKTTVS 22 (179)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4556799999998753
No 461
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=27.12 E-value=16 Score=30.55 Aligned_cols=17 Identities=18% Similarity=0.307 Sum_probs=13.9
Q ss_pred eEEEeeCCCCCCcccee
Q 047385 80 GTVITYGQTGAGKTFSM 96 (483)
Q Consensus 80 ~ti~ayG~tgSGKT~Tm 96 (483)
.-|+..|.+|+|||..+
T Consensus 6 ~~i~v~G~~~~GKssl~ 22 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMI 22 (168)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred EEEEEECcCCCCHHHHH
Confidence 45778899999998765
No 462
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=27.11 E-value=17 Score=32.92 Aligned_cols=15 Identities=33% Similarity=0.561 Sum_probs=12.6
Q ss_pred EEEeeCCCCCCccce
Q 047385 81 TVITYGQTGAGKTFS 95 (483)
Q Consensus 81 ti~ayG~tgSGKT~T 95 (483)
.|+-.|..|||||+.
T Consensus 7 ~I~l~G~~GsGKsT~ 21 (217)
T 3be4_A 7 NLILIGAPGSGKGTQ 21 (217)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467789999999875
No 463
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=27.10 E-value=20 Score=35.69 Aligned_cols=15 Identities=33% Similarity=0.445 Sum_probs=12.9
Q ss_pred EEEeeCCCCCCccce
Q 047385 81 TVITYGQTGAGKTFS 95 (483)
Q Consensus 81 ti~ayG~tgSGKT~T 95 (483)
.|+-.|+||||||..
T Consensus 9 lI~I~GptgSGKTtl 23 (340)
T 3d3q_A 9 LIVIVGPTASGKTEL 23 (340)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred eEEEECCCcCcHHHH
Confidence 577889999999875
No 464
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=26.96 E-value=17 Score=34.57 Aligned_cols=14 Identities=36% Similarity=0.563 Sum_probs=11.8
Q ss_pred EeeCCCCCCcccee
Q 047385 83 ITYGQTGAGKTFSM 96 (483)
Q Consensus 83 ~ayG~tgSGKT~Tm 96 (483)
--.|++|||||+.+
T Consensus 41 ~liG~nGsGKSTLl 54 (266)
T 4g1u_C 41 AIIGPNGAGKSTLL 54 (266)
T ss_dssp EEECCTTSCHHHHH
T ss_pred EEECCCCCcHHHHH
Confidence 34799999999876
No 465
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=26.94 E-value=23 Score=35.93 Aligned_cols=30 Identities=13% Similarity=0.224 Sum_probs=22.3
Q ss_pred HHHHHHhhc-Ccc--eEEEeeCCCCCCccceec
Q 047385 68 LPIIRDAFN-GMN--GTVITYGQTGAGKTFSME 97 (483)
Q Consensus 68 ~plv~~~l~-G~n--~ti~ayG~tgSGKT~Tm~ 97 (483)
-+-+|.++. |+. ..+.-+|++|||||..+.
T Consensus 164 ~~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~ 196 (400)
T 3lda_A 164 SKNLDTLLGGGVETGSITELFGEFRTGKSQLCH 196 (400)
T ss_dssp CHHHHHHTTTSEETTSEEEEEESTTSSHHHHHH
T ss_pred ChhHHHHhcCCcCCCcEEEEEcCCCCChHHHHH
Confidence 356788884 443 357789999999998874
No 466
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=26.92 E-value=17 Score=34.35 Aligned_cols=15 Identities=40% Similarity=0.532 Sum_probs=12.2
Q ss_pred EEeeCCCCCCcccee
Q 047385 82 VITYGQTGAGKTFSM 96 (483)
Q Consensus 82 i~ayG~tgSGKT~Tm 96 (483)
+.-.|+.|||||+.|
T Consensus 44 ~~l~G~NGsGKSTLl 58 (256)
T 1vpl_A 44 FGLIGPNGAGKTTTL 58 (256)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 345699999999876
No 467
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=26.89 E-value=17 Score=33.56 Aligned_cols=15 Identities=27% Similarity=0.304 Sum_probs=12.3
Q ss_pred EEeeCCCCCCcccee
Q 047385 82 VITYGQTGAGKTFSM 96 (483)
Q Consensus 82 i~ayG~tgSGKT~Tm 96 (483)
|--.|+.|||||+.+
T Consensus 28 igI~G~~GsGKSTl~ 42 (245)
T 2jeo_A 28 IGVSGGTASGKSTVC 42 (245)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 445699999999886
No 468
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=26.82 E-value=18 Score=34.16 Aligned_cols=15 Identities=33% Similarity=0.616 Sum_probs=12.2
Q ss_pred EEeeCCCCCCcccee
Q 047385 82 VITYGQTGAGKTFSM 96 (483)
Q Consensus 82 i~ayG~tgSGKT~Tm 96 (483)
+.-.|++|||||+.+
T Consensus 34 ~~l~G~nGsGKSTLl 48 (253)
T 2nq2_C 34 LAVLGQNGCGKSTLL 48 (253)
T ss_dssp EEEECCSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 345799999999876
No 469
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=26.81 E-value=17 Score=32.22 Aligned_cols=16 Identities=19% Similarity=0.254 Sum_probs=13.3
Q ss_pred EEEeeCCCCCCcccee
Q 047385 81 TVITYGQTGAGKTFSM 96 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm 96 (483)
.|+-.|..|||||+..
T Consensus 12 ~I~l~G~~GsGKST~~ 27 (212)
T 2wwf_A 12 FIVFEGLDRSGKSTQS 27 (212)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5778899999998753
No 470
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=26.80 E-value=38 Score=33.35 Aligned_cols=30 Identities=23% Similarity=0.323 Sum_probs=21.2
Q ss_pred HHHHHHHhh--cCcceEEEeeCCCCCCcccee
Q 047385 67 ALPIIRDAF--NGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 67 ~~plv~~~l--~G~n~ti~ayG~tgSGKT~Tm 96 (483)
+..++..+. .+....|...|.+|+|||.++
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~ 96 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAI 96 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHH
Confidence 444555554 455556777999999999875
No 471
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=26.78 E-value=19 Score=32.84 Aligned_cols=15 Identities=27% Similarity=0.627 Sum_probs=12.4
Q ss_pred EEeeCCCCCCcccee
Q 047385 82 VITYGQTGAGKTFSM 96 (483)
Q Consensus 82 i~ayG~tgSGKT~Tm 96 (483)
|+-.|..|||||+..
T Consensus 3 I~l~G~~GsGKsT~a 17 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQG 17 (223)
T ss_dssp EEEECCTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 677899999998753
No 472
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=26.74 E-value=2.1e+02 Score=21.68 Aligned_cols=12 Identities=8% Similarity=0.221 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q 047385 418 VEDLVRAVEELK 429 (483)
Q Consensus 418 ~~~l~~~~~~~~ 429 (483)
+.+....|.+|+
T Consensus 49 L~ekd~eI~~Lq 60 (72)
T 3nmd_A 49 LDQKDELIQMLQ 60 (72)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 473
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=26.72 E-value=17 Score=36.29 Aligned_cols=15 Identities=40% Similarity=0.682 Sum_probs=12.4
Q ss_pred EEeeCCCCCCcccee
Q 047385 82 VITYGQTGAGKTFSM 96 (483)
Q Consensus 82 i~ayG~tgSGKT~Tm 96 (483)
+.-.|++|||||++|
T Consensus 32 ~~llGpnGsGKSTLL 46 (359)
T 2yyz_A 32 VALLGPSGCGKTTTL 46 (359)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEEcCCCchHHHHH
Confidence 345799999999986
No 474
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=26.54 E-value=19 Score=31.67 Aligned_cols=16 Identities=25% Similarity=0.301 Sum_probs=13.0
Q ss_pred EEEeeCCCCCCcccee
Q 047385 81 TVITYGQTGAGKTFSM 96 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm 96 (483)
.|+-.|..|||||+..
T Consensus 6 ~I~l~G~~GsGKsT~~ 21 (204)
T 2v54_A 6 LIVFEGLDKSGKTTQC 21 (204)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4677899999998763
No 475
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=26.52 E-value=19 Score=32.08 Aligned_cols=16 Identities=31% Similarity=0.250 Sum_probs=12.7
Q ss_pred EEEeeCCCCCCcccee
Q 047385 81 TVITYGQTGAGKTFSM 96 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm 96 (483)
.|.-.|++|||||+..
T Consensus 23 ~i~i~G~~GsGKSTl~ 38 (207)
T 2qt1_A 23 IIGISGVTNSGKTTLA 38 (207)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4556799999998764
No 476
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=26.49 E-value=16 Score=36.57 Aligned_cols=15 Identities=33% Similarity=0.607 Sum_probs=12.3
Q ss_pred EEeeCCCCCCcccee
Q 047385 82 VITYGQTGAGKTFSM 96 (483)
Q Consensus 82 i~ayG~tgSGKT~Tm 96 (483)
+.-.|++|||||+++
T Consensus 33 ~~llGpsGsGKSTLL 47 (359)
T 3fvq_A 33 LFIIGASGCGKTTLL 47 (359)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCchHHHHH
Confidence 345799999999886
No 477
>3aei_A Prefoldin beta subunit 2; double helix, coiled coil, chaperone; 1.70A {Thermococcus SP}
Probab=26.48 E-value=2.2e+02 Score=21.83 Aligned_cols=15 Identities=40% Similarity=0.494 Sum_probs=9.4
Q ss_pred HHHHHHhcccccCCC
Q 047385 380 LEELFIMEGIILDPN 394 (483)
Q Consensus 380 ~~~~~~~~~~~~~~~ 394 (483)
.+|+.-.+|++....
T Consensus 27 mkeleyaegiit~~k 41 (99)
T 3aei_A 27 MKELEYAEGIITSLK 41 (99)
T ss_dssp HHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHHHHH
Confidence 345666788776543
No 478
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=26.42 E-value=22 Score=36.47 Aligned_cols=18 Identities=28% Similarity=0.477 Sum_probs=15.2
Q ss_pred EEEeeCCCCCCccceecC
Q 047385 81 TVITYGQTGAGKTFSMEG 98 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm~G 98 (483)
.|...|++|+|||++...
T Consensus 101 vI~ivG~~GvGKTTla~~ 118 (432)
T 2v3c_C 101 VILLVGIQGSGKTTTAAK 118 (432)
T ss_dssp CEEEECCSSSSTTHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 577789999999999744
No 479
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=26.33 E-value=18 Score=34.46 Aligned_cols=15 Identities=27% Similarity=0.419 Sum_probs=12.3
Q ss_pred EEeeCCCCCCcccee
Q 047385 82 VITYGQTGAGKTFSM 96 (483)
Q Consensus 82 i~ayG~tgSGKT~Tm 96 (483)
+.-.|++|||||+.+
T Consensus 48 ~~i~G~nGsGKSTLl 62 (271)
T 2ixe_A 48 TALVGPNGSGKSTVA 62 (271)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 445799999999875
No 480
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=26.25 E-value=18 Score=36.15 Aligned_cols=15 Identities=40% Similarity=0.541 Sum_probs=12.3
Q ss_pred EEeeCCCCCCcccee
Q 047385 82 VITYGQTGAGKTFSM 96 (483)
Q Consensus 82 i~ayG~tgSGKT~Tm 96 (483)
+.-.|++|||||++|
T Consensus 44 ~~llGpnGsGKSTLL 58 (355)
T 1z47_A 44 VGLLGPSGSGKTTIL 58 (355)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCcHHHHH
Confidence 345799999999986
No 481
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=26.20 E-value=18 Score=34.35 Aligned_cols=15 Identities=27% Similarity=0.370 Sum_probs=12.3
Q ss_pred EEeeCCCCCCcccee
Q 047385 82 VITYGQTGAGKTFSM 96 (483)
Q Consensus 82 i~ayG~tgSGKT~Tm 96 (483)
+.-.|++|||||+.+
T Consensus 49 ~~l~G~NGsGKSTLl 63 (267)
T 2zu0_C 49 HAIMGPNGSGKSTLS 63 (267)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 445799999999875
No 482
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=26.11 E-value=21 Score=32.06 Aligned_cols=16 Identities=31% Similarity=0.326 Sum_probs=13.1
Q ss_pred eEEEeeCCCCCCccce
Q 047385 80 GTVITYGQTGAGKTFS 95 (483)
Q Consensus 80 ~ti~ayG~tgSGKT~T 95 (483)
..|.-.|..|||||+.
T Consensus 5 ~~I~i~G~~GSGKST~ 20 (218)
T 1vht_A 5 YIVALTGGIGSGKSTV 20 (218)
T ss_dssp EEEEEECCTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3567789999999875
No 483
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=26.11 E-value=18 Score=33.87 Aligned_cols=15 Identities=33% Similarity=0.337 Sum_probs=12.3
Q ss_pred EEeeCCCCCCcccee
Q 047385 82 VITYGQTGAGKTFSM 96 (483)
Q Consensus 82 i~ayG~tgSGKT~Tm 96 (483)
+.-.|++|||||+.+
T Consensus 32 ~~l~G~nGsGKSTLl 46 (250)
T 2d2e_A 32 HALMGPNGAGKSTLG 46 (250)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 345799999999876
No 484
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=26.10 E-value=18 Score=36.55 Aligned_cols=15 Identities=33% Similarity=0.623 Sum_probs=12.4
Q ss_pred EEeeCCCCCCcccee
Q 047385 82 VITYGQTGAGKTFSM 96 (483)
Q Consensus 82 i~ayG~tgSGKT~Tm 96 (483)
+--.|++|||||++|
T Consensus 32 ~~llGpsGsGKSTLL 46 (381)
T 3rlf_A 32 VVFVGPSGCGKSTLL 46 (381)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEEcCCCchHHHHH
Confidence 345799999999986
No 485
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=26.06 E-value=18 Score=34.65 Aligned_cols=15 Identities=53% Similarity=0.738 Sum_probs=12.2
Q ss_pred EEeeCCCCCCcccee
Q 047385 82 VITYGQTGAGKTFSM 96 (483)
Q Consensus 82 i~ayG~tgSGKT~Tm 96 (483)
+.-.|+.|||||+.+
T Consensus 50 ~~liG~NGsGKSTLl 64 (279)
T 2ihy_A 50 WILYGLNGAGKTTLL 64 (279)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCcHHHHH
Confidence 345799999999876
No 486
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=25.97 E-value=20 Score=31.60 Aligned_cols=17 Identities=29% Similarity=0.472 Sum_probs=14.0
Q ss_pred eEEEeeCCCCCCcccee
Q 047385 80 GTVITYGQTGAGKTFSM 96 (483)
Q Consensus 80 ~ti~ayG~tgSGKT~Tm 96 (483)
..|...|+.|+|||..+
T Consensus 6 ~kv~lvG~~g~GKSTLl 22 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLL 22 (199)
T ss_dssp EEEEEESSTTSSHHHHH
T ss_pred EEEEEECcCCCCHHHHH
Confidence 45677899999999765
No 487
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=25.90 E-value=19 Score=33.98 Aligned_cols=15 Identities=33% Similarity=0.510 Sum_probs=12.3
Q ss_pred EEeeCCCCCCcccee
Q 047385 82 VITYGQTGAGKTFSM 96 (483)
Q Consensus 82 i~ayG~tgSGKT~Tm 96 (483)
+.-.|+.|||||+.+
T Consensus 29 ~~liG~NGsGKSTLl 43 (249)
T 2qi9_C 29 LHLVGPNGAGKSTLL 43 (249)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCcHHHHH
Confidence 345799999999875
No 488
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=25.81 E-value=34 Score=29.48 Aligned_cols=23 Identities=39% Similarity=0.456 Sum_probs=18.4
Q ss_pred hhcCcceEEEeeCCCCCCcccee
Q 047385 74 AFNGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 74 ~l~G~n~ti~ayG~tgSGKT~Tm 96 (483)
++......|...|.+|+|||..+
T Consensus 11 ~~~~~~~~i~v~G~~~~GKssl~ 33 (187)
T 1zj6_A 11 LFNHQEHKVIIVGLDNAGKTTIL 33 (187)
T ss_dssp HHTTSCEEEEEEESTTSSHHHHH
T ss_pred hcCCCccEEEEECCCCCCHHHHH
Confidence 45566778889999999998764
No 489
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=25.78 E-value=19 Score=36.25 Aligned_cols=15 Identities=40% Similarity=0.749 Sum_probs=12.3
Q ss_pred EEeeCCCCCCcccee
Q 047385 82 VITYGQTGAGKTFSM 96 (483)
Q Consensus 82 i~ayG~tgSGKT~Tm 96 (483)
+.-.|++|||||++|
T Consensus 32 ~~llGpnGsGKSTLL 46 (372)
T 1g29_1 32 MILLGPSGCGKTTTL 46 (372)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCcHHHHHH
Confidence 345799999999886
No 490
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=25.76 E-value=18 Score=36.15 Aligned_cols=15 Identities=27% Similarity=0.554 Sum_probs=12.4
Q ss_pred EEeeCCCCCCcccee
Q 047385 82 VITYGQTGAGKTFSM 96 (483)
Q Consensus 82 i~ayG~tgSGKT~Tm 96 (483)
+.-.|++|||||++|
T Consensus 32 ~~llGpnGsGKSTLL 46 (362)
T 2it1_A 32 MALLGPSGSGKSTLL 46 (362)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCchHHHHH
Confidence 345799999999986
No 491
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=25.65 E-value=23 Score=38.09 Aligned_cols=24 Identities=25% Similarity=-0.006 Sum_probs=18.6
Q ss_pred HHHhhcCcceEEEeeCCCCCCcccee
Q 047385 71 IRDAFNGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 71 v~~~l~G~n~ti~ayG~tgSGKT~Tm 96 (483)
+..+++|.+. +..++||||||...
T Consensus 180 i~~l~~g~dv--lv~a~TGSGKT~~~ 203 (618)
T 2whx_A 180 EDIFRKKRLT--IMDLHPGAGKTKRI 203 (618)
T ss_dssp GGGGSTTCEE--EECCCTTSSTTTTH
T ss_pred HHHHhcCCeE--EEEcCCCCCHHHHH
Confidence 5556677764 67899999999983
No 492
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=25.62 E-value=23 Score=31.84 Aligned_cols=17 Identities=24% Similarity=0.339 Sum_probs=13.6
Q ss_pred ceEEEeeCCCCCCccce
Q 047385 79 NGTVITYGQTGAGKTFS 95 (483)
Q Consensus 79 n~ti~ayG~tgSGKT~T 95 (483)
...|.-.|..|||||+.
T Consensus 12 ~~iIgltG~~GSGKSTv 28 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTV 28 (192)
T ss_dssp EEEEEEECSTTSSHHHH
T ss_pred ceEEEEECCCCCCHHHH
Confidence 34567789999999875
No 493
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=25.53 E-value=32 Score=34.17 Aligned_cols=30 Identities=27% Similarity=0.274 Sum_probs=21.5
Q ss_pred HHHHHHhhc--Ccc--eEEEeeCCCCCCccceec
Q 047385 68 LPIIRDAFN--GMN--GTVITYGQTGAGKTFSME 97 (483)
Q Consensus 68 ~plv~~~l~--G~n--~ti~ayG~tgSGKT~Tm~ 97 (483)
-+-+|.++. |+. ..++.||++|+|||+...
T Consensus 48 ~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal 81 (356)
T 1u94_A 48 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTL 81 (356)
T ss_dssp CHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHH
T ss_pred CHHHHHHhccCCccCCeEEEEECCCCCCHHHHHH
Confidence 355677775 332 357789999999998753
No 494
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=25.41 E-value=19 Score=34.21 Aligned_cols=16 Identities=44% Similarity=0.673 Sum_probs=12.9
Q ss_pred EEEeeCCCCCCcccee
Q 047385 81 TVITYGQTGAGKTFSM 96 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm 96 (483)
.+.-.|+.|||||+.|
T Consensus 32 ~~~i~G~NGsGKSTLl 47 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLL 47 (263)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3456799999999876
No 495
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=25.34 E-value=1.4e+02 Score=23.38 Aligned_cols=32 Identities=25% Similarity=0.298 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047385 410 TITSLQHMVEDLVRAVEELKSENKALKTRIAA 441 (483)
Q Consensus 410 ~~~~~~~~~~~l~~~~~~~~~e~~~l~~~~~~ 441 (483)
....|+++-..|+..+++|+.|+..|+.-+.+
T Consensus 44 r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~ 75 (87)
T 1hjb_A 44 KVLELTAENERLQKKVEQLSRELSTLRNLFKQ 75 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566666677777777777777665554
No 496
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=25.31 E-value=23 Score=31.81 Aligned_cols=17 Identities=24% Similarity=0.210 Sum_probs=13.5
Q ss_pred eEEEeeCCCCCCcccee
Q 047385 80 GTVITYGQTGAGKTFSM 96 (483)
Q Consensus 80 ~ti~ayG~tgSGKT~Tm 96 (483)
..|+-.|..|||||+..
T Consensus 26 ~~i~~~G~~GsGKsT~~ 42 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLA 42 (211)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 35667899999998764
No 497
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=25.31 E-value=96 Score=25.38 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 047385 411 ITSLQHMVEDLVRAVEELKSENK 433 (483)
Q Consensus 411 ~~~~~~~~~~l~~~~~~~~~e~~ 433 (483)
+.+|.+.+.+++.+++.+++|.+
T Consensus 20 i~~L~~ei~eLk~~ve~lEkERD 42 (106)
T 4e61_A 20 IGSLNEEIEQYKGTVSTLEIERE 42 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555554433
No 498
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=25.23 E-value=2.5e+02 Score=22.10 Aligned_cols=30 Identities=13% Similarity=0.294 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 047385 414 LQHMVEDLVRAVEELKSENKALKTRIAAAG 443 (483)
Q Consensus 414 ~~~~~~~l~~~~~~~~~e~~~l~~~~~~~~ 443 (483)
++..+.+|+..+..+..++.+|..++..++
T Consensus 54 ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~ 83 (93)
T 3s4r_A 54 YEEEMRELRRQVDQLTNDKARVEVERDNLA 83 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466778888888888888887777766644
No 499
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=25.18 E-value=22 Score=31.64 Aligned_cols=21 Identities=24% Similarity=0.382 Sum_probs=0.0
Q ss_pred cCcceEEEeeCCCCCCcccee
Q 047385 76 NGMNGTVITYGQTGAGKTFSM 96 (483)
Q Consensus 76 ~G~n~ti~ayG~tgSGKT~Tm 96 (483)
.+....|+..|.+|+|||..+
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~ 29 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLL 29 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHH
No 500
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=24.81 E-value=20 Score=36.09 Aligned_cols=16 Identities=31% Similarity=0.642 Sum_probs=0.0
Q ss_pred EEEeeCCCCCCcccee
Q 047385 81 TVITYGQTGAGKTFSM 96 (483)
Q Consensus 81 ti~ayG~tgSGKT~Tm 96 (483)
.+.-.|++|||||++|
T Consensus 39 ~~~llGpnGsGKSTLL 54 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTL 54 (372)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCChHHHHH
Done!