BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047386
(581 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DUL|A Chain A, Crystal Structure Of Trna G26 Methyltransferase Trm1 In
Apo Form From Pyrococcus Horikoshii
pdb|2EJT|A Chain A, Complex Structure Of Trm1 From Pyrococcus Horikoshii With
S-Adenosyl- L-Methionine
pdb|2EJU|A Chain A, Complex Structure Of Trm1 From Pyrococcus Horikoshii With
S-Adenosyl- L-Homocystein
pdb|2YTZ|A Chain A, Complex Structure Of Trm1 From Pyrococcus Horikoshii With
S- Adenosyl-l-homocystein In The Orthorhombic
Crystal-lattice
pdb|2YTZ|B Chain B, Complex Structure Of Trm1 From Pyrococcus Horikoshii With
S- Adenosyl-l-homocystein In The Orthorhombic
Crystal-lattice
Length = 378
Score = 172 bits (437), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 116/365 (31%), Positives = 176/365 (48%), Gaps = 42/365 (11%)
Query: 116 VLRQLKPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNI--KFNGSVA 173
+L L P VL+ALSA+G+R +R+A E +V D + + E +RN+ F+G +
Sbjct: 42 LLNILNPKIVLDALSATGIRGIRFALETPA-EEVWLNDISEDAYELMKRNVMLNFDGELR 100
Query: 174 CSKVESHLADARVYMLTHP----------KEFDVVDLDPYGSPSVFLDSAIQSVADGGML 223
SK + L + ++ H + F +DLDP+GSP FLD+A++S G+L
Sbjct: 101 ESKGRAILKGEKTIVINHDDANRLMAERHRYFHFIDLDPFGSPMEFLDTALRSAKRRGIL 160
Query: 224 MCTATDMAVLCGGNGEVCYSKYGSYPLRGKYCHEMALRILLACIESHANRYKRYIEPVLS 283
TATD A LCG + C KY + PLRG+ CHE+ RIL+ I +A +Y I+ +L+
Sbjct: 161 GVTATDGAPLCGAHPRACLRKYLAVPLRGELCHEVGTRILVGVIARYAAKYDLGIDVILA 220
Query: 284 VQMDFYVRVFVRIYTSASAMKSTPLKLSYVYQCIGCDSFHLQPVGRTASNKNNSVRYLPG 343
D Y R FV++ A T KL Y+Y F L+ G
Sbjct: 221 YYKDHYFRAFVKLKDGARKGDETLEKLGYIYFDDKTGKFELE----------------QG 264
Query: 344 FGPVVPQLCSDCGKKFNMGGPIWSGRIHDQEWVNSILGEVKSMKDRYPAYDRISAVLTTI 403
F P P N GP+W G + D++ V+ ++ E +S+ + +L I
Sbjct: 265 FLPTRP----------NAYGPVWLGPLKDEKIVSKMVKEAESLS--LARKKQALKLLKMI 312
Query: 404 SEELPDVPLFLSLHNLCSTLKCTSPSAVMFRSAVINAGYRVSGTHVNPLGLKTDAPMGVI 463
+EL D+PLF H + LK + SA+ GY + TH +P G+KT AP V
Sbjct: 313 DQEL-DIPLFYDTHAIGRRLKIETKKVEEIISALREQGYEATRTHFSPTGIKTSAPYEVF 371
Query: 464 WDIMR 468
+ ++
Sbjct: 372 IETIK 376
>pdb|3AXS|A Chain A, Complex Structure Of Trna Methyltransferase Trm1 From
Aquifex Aeolicus With Sinefungin
pdb|3AXT|A Chain A, Complex Structure Of Trna Methyltransferase Trm1 From
Aquifex Aeolicus With S-Adenosyl-L-Methionine
Length = 392
Score = 130 bits (326), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 83/290 (28%), Positives = 138/290 (47%), Gaps = 28/290 (9%)
Query: 121 KPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESH 180
+P +V + LSASG+RA+R+ E + + A D ++E + N K N ++ + E H
Sbjct: 52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLN-NIPEDRYEIH 110
Query: 181 LADARVYMLTHPKE----FDVVDLDPYGSPSVFLDSAIQSVADGGMLMCTATDMAVLCGG 236
+A ++ KE FD VDLDP+G+P F++S S+ GG+L TATD A L G
Sbjct: 111 GMEANFFL---RKEWGFGFDYVDLDPFGTPVPFIESVALSMKRGGILSLTATDTAPLSGT 167
Query: 237 NGEVCYSKYGSYPLRGKYCHEMALRILLACIESHANRYKRYIEPVLSVQMDFYVRVFVRI 296
+ C +Y + PLR ++ HE+ +RIL+ + A +Y + P+ + Y ++F
Sbjct: 168 YPKTCMRRYMARPLRNEFKHEVGIRILIKKVIELAAQYDIAMIPIFAYSHLHYFKLFFVK 227
Query: 297 YTSASAMKSTPLKLSYVYQCIGCDSFHLQPVGRTASNKNNSVRYLPGFGPVVPQLCSDCG 356
+ + Y+ C C + R + + C CG
Sbjct: 228 ERGVEKVDKLIEQFGYIQYCFNC-------MNREVVTDLYKFK----------EKCPHCG 270
Query: 357 KKFNMGGPIWSGRIHDQEWVNSILGEVKSMKDRYPAYDRISAVLTTISEE 406
KF++GGP+W G++ D+E+ N + E + ++ RI L I EE
Sbjct: 271 SKFHIGGPLWIGKLWDEEFTNFLYEEAQKREEIEKETKRI---LKLIKEE 317
>pdb|3A4T|A Chain A, Crystal Structure Of Atrm4 From M.Jannaschii With
Sinefungin
pdb|3A4T|B Chain B, Crystal Structure Of Atrm4 From M.Jannaschii With
Sinefungin
pdb|3AJD|A Chain A, Crystal Structure Of Atrm4
Length = 274
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 60/125 (48%), Gaps = 7/125 (5%)
Query: 125 VLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADA 184
+L+ +A G + A+ ++ G +VA++ K +A + NI G + + + +
Sbjct: 87 ILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKY 146
Query: 185 RVYMLTHPKEFDVVDLDPYGSPSVFLDSAIQSVADGGMLMCT-----ATDMAV-LCGGNG 238
+ Y+L + FD + LD S ++ D ++V++ + C+ D+ + L +G
Sbjct: 147 KDYLLKNEIFFDKILLDAPCSGNIIKDKN-RNVSEEDIKYCSLRQKELIDIGIDLLKKDG 205
Query: 239 EVCYS 243
E+ YS
Sbjct: 206 ELVYS 210
>pdb|1QE0|A Chain A, Crystal Structure Of Apo S. Aureus Histidyl-Trna
Synthetase
pdb|1QE0|B Chain B, Crystal Structure Of Apo S. Aureus Histidyl-Trna
Synthetase
Length = 420
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 312 YVYQCIGCDSFHL--QPVGRTASNKNNSVRYLPGFGPVVPQLCSDCGKKFN 360
++YQ G L VG AS K + + F PV+ + CSDC + +
Sbjct: 149 HIYQSFGLKHLKLVINSVGDMASRKEYNEALVKHFEPVIHEFCSDCQSRLH 199
>pdb|2CWW|A Chain A, Crystal Structure Of Thermus Thermophilus Ttha1280, A
Putative Sam- Dependent Rna Methyltransferase, In
Complex With S-Adenosyl-L- Homocysteine
pdb|2CWW|B Chain B, Crystal Structure Of Thermus Thermophilus Ttha1280, A
Putative Sam- Dependent Rna Methyltransferase, In
Complex With S-Adenosyl-L- Homocysteine
Length = 382
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 3/89 (3%)
Query: 114 RNVLRQLKPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVA 173
R + + + R L+ S +G AL A G +VVA+D+ ++ N + NG
Sbjct: 202 RLYMERFRGERALDVFSYAGGFALHLAL---GFREVVAVDSSAEALRRAEENARLNGLGN 258
Query: 174 CSKVESHLADARVYMLTHPKEFDVVDLDP 202
+E++ D + + FD+V LDP
Sbjct: 259 VRVLEANAFDLLRRLEKEGERFDLVVLDP 287
>pdb|1WXW|A Chain A, Crystal Structure Of Tt1595, A Putative Sam-Dependent
Methyltransferase From Thermus Thermophillus Hb8
pdb|1WXW|B Chain B, Crystal Structure Of Tt1595, A Putative Sam-Dependent
Methyltransferase From Thermus Thermophillus Hb8
pdb|1WXW|C Chain C, Crystal Structure Of Tt1595, A Putative Sam-Dependent
Methyltransferase From Thermus Thermophillus Hb8
pdb|1WXW|D Chain D, Crystal Structure Of Tt1595, A Putative Sam-Dependent
Methyltransferase From Thermus Thermophillus Hb8
pdb|1WXX|A Chain A, Crystal Structure Of Tt1595, A Putative Sam-Dependent
Methyltransferase From Thermus Thermophillus Hb8
pdb|1WXX|B Chain B, Crystal Structure Of Tt1595, A Putative Sam-Dependent
Methyltransferase From Thermus Thermophillus Hb8
pdb|1WXX|C Chain C, Crystal Structure Of Tt1595, A Putative Sam-Dependent
Methyltransferase From Thermus Thermophillus Hb8
pdb|1WXX|D Chain D, Crystal Structure Of Tt1595, A Putative Sam-Dependent
Methyltransferase From Thermus Thermophillus Hb8
Length = 382
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
Query: 119 QLKPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVE 178
+ + R L+ S +G AL A G +VVA+D+ ++ N + NG +E
Sbjct: 207 RFRGERALDVFSYAGGFALHLAL---GFREVVAVDSSAEALRRAEENARLNGLGNVRVLE 263
Query: 179 SHLADARVYMLTHPKEFDVVDLDP 202
++ D + + FD+V LDP
Sbjct: 264 ANAFDLLRRLEKEGERFDLVVLDP 287
>pdb|2GPY|A Chain A, Crystal Structure Of Putative O-methyltransferase From
Bacillus Halodurans
pdb|2GPY|B Chain B, Crystal Structure Of Putative O-methyltransferase From
Bacillus Halodurans
Length = 233
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 16/119 (13%)
Query: 115 NVLRQLKPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVAC 174
++L+ P R+LE +A G A+R A+ + +V+++ D+ E +++K G
Sbjct: 48 HLLKXAAPARILEIGTAIGYSAIRXAQALPE-ATIVSIERDERRYEEAHKHVKALG--LE 104
Query: 175 SKVESHLADA-------RVYMLTHPKEFDVVDLD-PYGSPSVFLDSAIQSVADGGMLMC 225
S++E DA +Y L FDV+ +D G F D V GG+++
Sbjct: 105 SRIELLFGDALQLGEKLELYPL-----FDVLFIDAAKGQYRRFFDXYSPXVRPGGLILS 158
>pdb|3TFW|A Chain A, Crystal Structure Of A Putative O-Methyltransferase From
Klebsiella Pneumoniae
pdb|3TFW|B Chain B, Crystal Structure Of A Putative O-Methyltransferase From
Klebsiella Pneumoniae
Length = 248
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 28/55 (50%)
Query: 116 VLRQLKPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNG 170
++R + R+LE + G + ARE+ GQ++ L+ D + R N++ G
Sbjct: 58 LVRLTQAKRILEIGTLGGYSTIWXARELPADGQLLTLEADAHHAQVARENLQLAG 112
>pdb|1Q5D|A Chain A, Epothilone B-Bound Cytochrome P450epok
pdb|1Q5E|A Chain A, Substrate-Free Cytochrome P450epok
Length = 419
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 43/101 (42%), Gaps = 8/101 (7%)
Query: 464 WDIMRCWV--KNHPVKAQLPDQPGSVILAKEPTLQANFARAVASLSKAQAKKVARFLPNP 521
WD R WV + H V A D+ +V +E A ++ A+ LS KK F P
Sbjct: 44 WDEGRSWVLTRYHDVSAVFRDERFAVS-REEWESSAEYSSAIPELS--DMKKYGLFGLPP 100
Query: 522 EKHWGPKPRAGRQITSKHISLLGAE---AVNGHLSLEDGEE 559
E H + TS+ I LL AE V+ L G+E
Sbjct: 101 EDHARVRKLVNPSFTSRAIDLLRAEIQRTVDQLLDARSGQE 141
>pdb|1PKF|A Chain A, Crystal Structure Of Epothilone D-Bound Cytochrome
P450epok
Length = 419
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 43/101 (42%), Gaps = 8/101 (7%)
Query: 464 WDIMRCWV--KNHPVKAQLPDQPGSVILAKEPTLQANFARAVASLSKAQAKKVARFLPNP 521
WD R WV + H V A D+ +V +E A ++ A+ LS KK F P
Sbjct: 44 WDEGRSWVLTRYHDVSAVFRDERFAVS-REEWESSAEYSSAIPELS--DMKKYGLFGLPP 100
Query: 522 EKHWGPKPRAGRQITSKHISLLGAE---AVNGHLSLEDGEE 559
E H + TS+ I LL AE V+ L G+E
Sbjct: 101 EDHARVRKLVNPSFTSRAIDLLRAEIQRTVDQLLDARSGQE 141
>pdb|3C0K|A Chain A, Crystal Structure Of A Ribosomal Rna Methyltranferase
pdb|3C0K|B Chain B, Crystal Structure Of A Ribosomal Rna Methyltranferase
Length = 396
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 59/123 (47%), Gaps = 19/123 (15%)
Query: 118 RQLKPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKV 177
R ++ RVL S +G A+ + G QVV++D + +++ R+N++ N + SK
Sbjct: 217 RYVENKRVLNCFSYTGGFAV--SALXGGCSQVVSVDTSQEALDIARQNVELN-KLDLSKA 273
Query: 178 ESHLADARVYMLTH---PKEFDVVDLDP----------YGSPSVFLDS---AIQSVADGG 221
E D + T+ ++FDV+ DP G+ + D AIQ + +GG
Sbjct: 274 EFVRDDVFKLLRTYRDRGEKFDVIVXDPPKFVENKSQLXGACRGYKDINXLAIQLLNEGG 333
Query: 222 MLM 224
+L+
Sbjct: 334 ILL 336
>pdb|1I9G|A Chain A, Crystal Structure Of An Adomet Dependent Methyltransferase
Length = 280
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 48/110 (43%), Gaps = 18/110 (16%)
Query: 124 RVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKF-------NGSVACSK 176
RVLEA + SG L R V GQV++ + E RRN+ N + S
Sbjct: 102 RVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSD 161
Query: 177 V-ESHLADARVYMLTHPKEFDVVDLDPYGSPSVFLDSAIQSVADGGMLMC 225
+ +S L D V + V+D+ +P LD+ + + GG+LM
Sbjct: 162 LADSELPDGSV-------DRAVLDML---APWEVLDAVSRLLVAGGVLMV 201
>pdb|3RDE|A Chain A, Crystal Structure Of The Catalytic Domain Of Porcine
Leukocyte 12- Lipoxygenase
pdb|3RDE|B Chain B, Crystal Structure Of The Catalytic Domain Of Porcine
Leukocyte 12- Lipoxygenase
pdb|3RDE|C Chain C, Crystal Structure Of The Catalytic Domain Of Porcine
Leukocyte 12- Lipoxygenase
pdb|3RDE|D Chain D, Crystal Structure Of The Catalytic Domain Of Porcine
Leukocyte 12- Lipoxygenase
Length = 573
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 437 VINAGYRVSGTHVNPLGLKTDAPMGVIWDIMRCWVKN 473
VI G+ + PL L TD PM +W + +CWV++
Sbjct: 226 VIQLQLPREGSPLPPLFLPTDPPM--VWLLAKCWVRS 260
>pdb|1GKK|A Chain A, Feruloyl Esterase Domain Of Xyny From Clostridium
Thermocellum
pdb|1GKK|B Chain B, Feruloyl Esterase Domain Of Xyny From Clostridium
Thermocellum
pdb|4H35|A Chain A, Feruloyl Esterase Domain Of Xyny From Clostridium
Thermocellum Before Exposure To 266nm Uv Laser
pdb|4H35|B Chain B, Feruloyl Esterase Domain Of Xyny From Clostridium
Thermocellum Before Exposure To 266nm Uv Laser
Length = 297
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 507 SKAQAKKVARFLPNPEKHWGPKPRAGRQITSKHISLLGAEAVNGHLSLEDGEEPDAK 563
S + + ++ P P+ + P P+AGR + + + G +++N +L G +P+ K
Sbjct: 14 SSFKYESAVQYRPAPDSYLNPCPQAGRIVKETYTGINGTKSLNVYLPY--GYDPNKK 68
>pdb|1GKL|A Chain A, S954a Mutant Of The Feruloyl Esterase Module From
Clostridium Thermocellum Complexed With Ferulic Acid
pdb|1GKL|B Chain B, S954a Mutant Of The Feruloyl Esterase Module From
Clostridium Thermocellum Complexed With Ferulic Acid
pdb|1WB4|A Chain A, S954a Mutant Of The Feruloyl Esterase Module From
Clostridium Thermocellum Complexed With Sinapinate
pdb|1WB4|B Chain B, S954a Mutant Of The Feruloyl Esterase Module From
Clostridium Thermocellum Complexed With Sinapinate
pdb|1WB5|A Chain A, S954a Mutant Of The Feruloyl Esterase Module From
Clostridium Thermocellum Complexed With Syringate
pdb|1WB5|B Chain B, S954a Mutant Of The Feruloyl Esterase Module From
Clostridium Thermocellum Complexed With Syringate
pdb|1WB6|A Chain A, S954a Mutant Of The Feruloyl Esterase Module From
Clostridium Thermocellum Complexed With Vanillate
pdb|1WB6|B Chain B, S954a Mutant Of The Feruloyl Esterase Module From
Clostridium Thermocellum Complexed With Vanillate
Length = 297
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 507 SKAQAKKVARFLPNPEKHWGPKPRAGRQITSKHISLLGAEAVNGHLSLEDGEEPDAK 563
S + + ++ P P+ + P P+AGR + + + G +++N +L G +P+ K
Sbjct: 14 SSFKYESAVQYRPAPDSYLNPCPQAGRIVKETYTGINGTKSLNVYLPY--GYDPNKK 68
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,328,472
Number of Sequences: 62578
Number of extensions: 710928
Number of successful extensions: 1594
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1581
Number of HSP's gapped (non-prelim): 18
length of query: 581
length of database: 14,973,337
effective HSP length: 104
effective length of query: 477
effective length of database: 8,465,225
effective search space: 4037912325
effective search space used: 4037912325
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)