Query 047386
Match_columns 581
No_of_seqs 323 out of 1507
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 10:36:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047386.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047386hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1253 tRNA methyltransferase 100.0 4E-141 8E-146 1124.3 32.6 503 2-533 16-524 (525)
2 COG1867 TRM1 N2,N2-dimethylgua 100.0 4E-111 9E-116 873.0 35.6 371 6-473 2-379 (380)
3 PF02005 TRM: N2,N2-dimethylgu 100.0 2E-110 5E-115 888.5 32.1 373 10-468 5-377 (377)
4 TIGR00308 TRM1 tRNA(guanine-26 100.0 3E-108 6E-113 871.5 38.9 372 10-471 1-372 (374)
5 PRK04338 N(2),N(2)-dimethylgua 100.0 9.7E-98 2E-102 793.8 40.9 366 7-471 1-381 (382)
6 COG1092 Predicted SAM-dependen 99.8 1.9E-19 4E-24 192.8 18.3 140 120-288 216-373 (393)
7 PF03602 Cons_hypoth95: Conser 99.7 4.7E-18 1E-22 165.2 9.8 126 120-249 41-178 (183)
8 PRK15128 23S rRNA m(5)C1962 me 99.7 6E-17 1.3E-21 174.5 18.3 139 121-288 220-376 (396)
9 PF10672 Methyltrans_SAM: S-ad 99.7 3E-17 6.4E-22 169.7 13.9 138 121-289 123-272 (286)
10 COG0742 N6-adenine-specific me 99.7 1.1E-16 2.5E-21 155.5 13.7 126 119-250 41-180 (187)
11 PF02475 Met_10: Met-10+ like- 99.7 3.5E-16 7.7E-21 154.2 11.7 99 122-225 102-200 (200)
12 TIGR00095 RNA methyltransferas 99.6 2.4E-15 5.1E-20 146.8 13.1 126 120-249 48-184 (189)
13 COG2520 Predicted methyltransf 99.6 1.6E-14 3.5E-19 152.2 18.8 144 122-296 189-339 (341)
14 PRK11783 rlmL 23S rRNA m(2)G24 99.6 1.7E-14 3.6E-19 165.7 19.4 134 122-290 539-689 (702)
15 PRK10909 rsmD 16S rRNA m(2)G96 99.5 1.4E-13 3E-18 135.7 13.7 123 121-250 53-185 (199)
16 PF13659 Methyltransf_26: Meth 99.4 1.9E-12 4.1E-17 114.3 11.5 101 123-227 2-115 (117)
17 PRK05031 tRNA (uracil-5-)-meth 99.3 1.1E-11 2.4E-16 132.4 13.2 97 123-227 208-320 (362)
18 TIGR02143 trmA_only tRNA (urac 99.3 1.8E-11 3.9E-16 130.4 12.9 103 123-234 199-324 (353)
19 TIGR02085 meth_trns_rumB 23S r 99.3 2.5E-11 5.4E-16 130.1 13.7 100 121-227 233-334 (374)
20 COG2265 TrmA SAM-dependent met 99.3 2.9E-11 6.3E-16 131.8 12.4 108 121-235 293-410 (432)
21 PRK03522 rumB 23S rRNA methylu 99.2 1.8E-10 3.9E-15 120.6 13.4 101 121-227 173-274 (315)
22 TIGR00446 nop2p NOL1/NOP2/sun 99.2 2.4E-10 5.1E-15 117.0 13.8 103 121-227 71-199 (264)
23 PF05175 MTS: Methyltransferas 99.2 1.1E-10 2.5E-15 111.5 9.2 99 122-226 32-139 (170)
24 PF12847 Methyltransf_18: Meth 99.2 2.6E-10 5.7E-15 99.7 10.8 102 122-227 2-111 (112)
25 TIGR00479 rumA 23S rRNA (uraci 99.2 2.4E-10 5.1E-15 124.4 12.8 99 122-227 293-396 (431)
26 COG2263 Predicted RNA methylas 99.1 3E-10 6.5E-15 110.7 11.1 89 118-216 42-136 (198)
27 PRK00377 cbiT cobalt-precorrin 99.1 7.5E-10 1.6E-14 108.1 13.8 105 121-227 40-145 (198)
28 PLN02781 Probable caffeoyl-CoA 99.1 5E-10 1.1E-14 112.9 12.3 105 121-227 68-178 (234)
29 TIGR03533 L3_gln_methyl protei 99.1 6.3E-10 1.4E-14 115.2 13.0 101 122-227 122-251 (284)
30 TIGR03704 PrmC_rel_meth putati 99.1 6.9E-10 1.5E-14 113.0 12.2 98 123-227 88-216 (251)
31 PRK13168 rumA 23S rRNA m(5)U19 99.1 7.7E-10 1.7E-14 121.1 13.2 100 121-227 297-400 (443)
32 PRK14902 16S rRNA methyltransf 99.1 7.9E-10 1.7E-14 121.0 12.8 104 121-227 250-379 (444)
33 TIGR02469 CbiT precorrin-6Y C5 99.1 1.3E-09 2.8E-14 96.3 11.7 102 122-227 20-122 (124)
34 PF05958 tRNA_U5-meth_tr: tRNA 99.1 3E-10 6.5E-15 121.0 8.8 95 124-227 199-310 (352)
35 PRK14903 16S rRNA methyltransf 99.1 1.2E-09 2.6E-14 119.4 13.5 104 121-227 237-366 (431)
36 PLN02476 O-methyltransferase 99.1 1.3E-09 2.8E-14 112.7 12.5 104 121-226 118-227 (278)
37 COG4123 Predicted O-methyltran 99.1 1.3E-09 2.8E-14 110.8 12.2 103 122-227 45-170 (248)
38 TIGR00138 gidB 16S rRNA methyl 99.0 1.9E-09 4.1E-14 104.7 12.7 100 121-226 42-141 (181)
39 PRK14901 16S rRNA methyltransf 99.0 1.4E-09 3.1E-14 118.7 13.1 103 121-226 252-383 (434)
40 PRK14967 putative methyltransf 99.0 1.7E-09 3.6E-14 107.6 12.1 98 122-227 37-159 (223)
41 PRK14904 16S rRNA methyltransf 99.0 1.9E-09 4.1E-14 118.1 13.1 103 120-227 249-377 (445)
42 PRK10901 16S rRNA methyltransf 99.0 2.4E-09 5.1E-14 116.8 13.0 102 121-227 244-372 (427)
43 PRK07402 precorrin-6B methylas 99.0 4.4E-09 9.6E-14 102.4 13.5 102 122-227 41-142 (196)
44 PRK11805 N5-glutamine S-adenos 99.0 3.9E-09 8.4E-14 110.6 12.9 100 123-227 135-263 (307)
45 PRK00811 spermidine synthase; 98.9 1.6E-08 3.6E-13 104.6 15.6 105 122-227 77-191 (283)
46 TIGR00536 hemK_fam HemK family 98.9 5.7E-09 1.2E-13 107.8 12.1 100 123-227 116-244 (284)
47 TIGR01177 conserved hypothetic 98.9 5.5E-09 1.2E-13 110.1 11.7 100 121-227 182-294 (329)
48 PRK08287 cobalt-precorrin-6Y C 98.9 1.2E-08 2.7E-13 98.4 12.5 99 122-227 32-131 (187)
49 PRK04457 spermidine synthase; 98.9 9.3E-09 2E-13 105.4 12.1 103 122-227 67-177 (262)
50 PF01170 UPF0020: Putative RNA 98.9 1E-08 2.2E-13 99.5 11.6 102 122-227 29-150 (179)
51 PRK15001 SAM-dependent 23S rib 98.9 7.3E-09 1.6E-13 111.5 11.6 102 123-227 230-340 (378)
52 PF13847 Methyltransf_31: Meth 98.9 6.3E-09 1.4E-13 97.0 9.6 102 122-227 4-110 (152)
53 COG2264 PrmA Ribosomal protein 98.9 1.6E-08 3.4E-13 105.4 13.5 101 120-226 161-262 (300)
54 PRK00107 gidB 16S rRNA methylt 98.9 1.2E-08 2.7E-13 99.7 11.8 100 122-227 46-145 (187)
55 PRK11933 yebU rRNA (cytosine-C 98.9 1.4E-08 3.1E-13 112.1 13.2 104 121-227 113-242 (470)
56 TIGR00537 hemK_rel_arch HemK-r 98.9 1.4E-08 3.1E-13 97.3 11.7 97 121-227 19-140 (179)
57 PRK10742 putative methyltransf 98.9 7.3E-09 1.6E-13 105.3 10.0 77 124-203 91-174 (250)
58 TIGR00563 rsmB ribosomal RNA s 98.9 1.1E-08 2.5E-13 111.4 12.2 104 121-227 238-368 (426)
59 PF09445 Methyltransf_15: RNA 98.9 7.6E-09 1.7E-13 99.3 9.2 78 124-206 2-82 (163)
60 TIGR00406 prmA ribosomal prote 98.9 1.2E-08 2.6E-13 105.8 11.1 100 121-227 159-259 (288)
61 PF06325 PrmA: Ribosomal prote 98.8 3.5E-09 7.7E-14 110.4 6.5 98 120-226 160-258 (295)
62 PRK00121 trmB tRNA (guanine-N( 98.8 4.2E-08 9.2E-13 96.5 13.5 103 121-227 40-156 (202)
63 PRK01544 bifunctional N5-gluta 98.8 2.4E-08 5.3E-13 111.3 12.7 101 122-227 139-269 (506)
64 TIGR03534 RF_mod_PrmC protein- 98.8 3.6E-08 7.9E-13 98.3 12.6 100 122-227 88-217 (251)
65 COG2242 CobL Precorrin-6B meth 98.8 5.3E-08 1.2E-12 95.0 13.1 102 121-227 34-135 (187)
66 COG2890 HemK Methylase of poly 98.8 2.3E-08 4.9E-13 103.7 11.3 97 124-227 113-238 (280)
67 PRK03612 spermidine synthase; 98.8 6.9E-08 1.5E-12 108.0 15.2 104 122-227 298-415 (521)
68 PRK14966 unknown domain/N5-glu 98.8 4.5E-08 9.7E-13 106.3 12.5 101 122-227 252-381 (423)
69 TIGR00080 pimt protein-L-isoas 98.8 4.7E-08 1E-12 96.7 11.2 100 121-226 77-176 (215)
70 PRK00517 prmA ribosomal protei 98.7 3.9E-08 8.5E-13 99.7 10.2 93 121-226 119-212 (250)
71 PRK01581 speE spermidine synth 98.7 2.5E-07 5.5E-12 98.9 16.6 105 121-227 150-268 (374)
72 TIGR00417 speE spermidine synt 98.7 1E-07 2.3E-12 97.9 13.2 104 122-227 73-186 (270)
73 PRK14968 putative methyltransf 98.7 4.9E-07 1.1E-11 86.0 16.8 100 122-227 24-148 (188)
74 PRK09489 rsmC 16S ribosomal RN 98.7 5.7E-08 1.2E-12 103.4 11.3 97 123-227 198-303 (342)
75 PF01596 Methyltransf_3: O-met 98.7 5.9E-08 1.3E-12 96.4 10.1 105 121-227 45-155 (205)
76 TIGR02752 MenG_heptapren 2-hep 98.7 1.5E-07 3.3E-12 93.2 12.4 102 122-227 46-151 (231)
77 COG4122 Predicted O-methyltran 98.7 1.8E-07 4E-12 93.7 12.9 104 121-226 59-165 (219)
78 PRK09328 N5-glutamine S-adenos 98.7 1.2E-07 2.6E-12 96.2 11.7 101 121-227 108-238 (275)
79 PRK13944 protein-L-isoaspartat 98.7 1.4E-07 2.9E-12 93.1 11.6 102 121-227 72-173 (205)
80 COG2813 RsmC 16S RNA G1207 met 98.7 9.5E-08 2.1E-12 99.4 10.9 97 124-227 161-266 (300)
81 PLN02366 spermidine synthase 98.7 2E-07 4.4E-12 97.9 13.1 104 122-227 92-206 (308)
82 PRK11036 putative S-adenosyl-L 98.7 2.5E-07 5.4E-12 93.8 12.8 101 122-227 45-149 (255)
83 PLN02823 spermine synthase 98.6 2.4E-07 5.1E-12 98.5 12.8 104 122-227 104-220 (336)
84 PLN02589 caffeoyl-CoA O-methyl 98.6 2.4E-07 5.3E-12 94.5 12.1 105 120-226 78-189 (247)
85 COG2227 UbiG 2-polyprenyl-3-me 98.6 1.3E-07 2.9E-12 95.4 9.7 100 120-227 58-161 (243)
86 TIGR00091 tRNA (guanine-N(7)-) 98.6 5.7E-07 1.2E-11 87.9 13.5 102 122-227 17-132 (194)
87 COG1041 Predicted DNA modifica 98.6 9.8E-08 2.1E-12 101.0 8.7 100 121-227 197-310 (347)
88 KOG3420 Predicted RNA methylas 98.6 6.6E-08 1.4E-12 90.9 6.1 94 118-218 45-144 (185)
89 COG0144 Sun tRNA and rRNA cyto 98.6 4E-07 8.6E-12 97.5 12.2 105 120-227 155-288 (355)
90 PHA03412 putative methyltransf 98.6 2.6E-07 5.6E-12 93.7 9.8 147 122-321 50-203 (241)
91 PRK13942 protein-L-isoaspartat 98.6 4.2E-07 9.2E-12 90.2 11.0 101 121-227 76-176 (212)
92 cd02440 AdoMet_MTases S-adenos 98.5 9.7E-07 2.1E-11 72.8 11.2 98 124-226 1-103 (107)
93 PF01189 Nol1_Nop2_Fmu: NOL1/N 98.5 7.5E-07 1.6E-11 92.5 11.7 105 120-227 84-219 (283)
94 PF01564 Spermine_synth: Sperm 98.5 8.6E-07 1.9E-11 90.3 11.4 105 122-227 77-191 (246)
95 KOG1663 O-methyltransferase [S 98.5 1.4E-06 3.1E-11 87.5 12.3 108 118-227 70-183 (237)
96 KOG2187 tRNA uracil-5-methyltr 98.5 2.5E-07 5.3E-12 101.6 7.3 99 122-227 384-490 (534)
97 smart00650 rADc Ribosomal RNA 98.5 8.7E-07 1.9E-11 84.4 10.1 97 122-227 14-113 (169)
98 PLN02396 hexaprenyldihydroxybe 98.5 1.4E-06 3.1E-11 92.1 12.6 102 120-227 130-235 (322)
99 PHA03411 putative methyltransf 98.5 1E-06 2.2E-11 91.2 10.9 72 122-204 65-137 (279)
100 PF08704 GCD14: tRNA methyltra 98.5 9.8E-07 2.1E-11 90.1 10.6 104 121-227 40-146 (247)
101 PLN02672 methionine S-methyltr 98.4 1.3E-06 2.8E-11 104.5 13.0 82 121-203 118-212 (1082)
102 PRK11207 tellurite resistance 98.4 1.8E-06 3.8E-11 84.7 11.1 97 121-225 30-132 (197)
103 PRK11873 arsM arsenite S-adeno 98.4 2.7E-06 5.8E-11 86.8 12.5 103 121-227 77-183 (272)
104 PRK13943 protein-L-isoaspartat 98.4 2.6E-06 5.7E-11 90.1 12.5 100 121-226 80-179 (322)
105 PLN02244 tocopherol O-methyltr 98.4 2E-06 4.3E-11 91.3 11.4 101 122-227 119-223 (340)
106 PRK14121 tRNA (guanine-N(7)-)- 98.4 4.9E-06 1.1E-10 90.0 13.7 109 121-234 122-241 (390)
107 PRK00312 pcm protein-L-isoaspa 98.4 2.5E-06 5.4E-11 84.0 10.6 98 121-227 78-175 (212)
108 TIGR00477 tehB tellurite resis 98.3 2.7E-06 5.9E-11 83.2 10.4 97 122-227 31-134 (195)
109 COG2519 GCD14 tRNA(1-methylade 98.3 5E-06 1.1E-10 84.7 11.5 104 119-227 92-195 (256)
110 PRK12335 tellurite resistance 98.3 3.9E-06 8.5E-11 86.9 10.9 97 121-226 120-222 (287)
111 PF01209 Ubie_methyltran: ubiE 98.3 1.9E-06 4.1E-11 87.2 8.3 102 122-227 48-153 (233)
112 PRK11783 rlmL 23S rRNA m(2)G24 98.3 4.4E-06 9.6E-11 96.8 12.4 109 122-232 191-352 (702)
113 PRK05134 bifunctional 3-demeth 98.3 9E-06 2E-10 80.8 13.0 100 121-227 48-151 (233)
114 smart00828 PKS_MT Methyltransf 98.3 5.5E-06 1.2E-10 81.7 10.9 99 124-227 2-104 (224)
115 PRK04266 fibrillarin; Provisio 98.3 2.8E-05 6.2E-10 78.4 16.2 99 122-226 73-175 (226)
116 COG2226 UbiE Methylase involve 98.3 6.4E-06 1.4E-10 83.7 11.3 101 121-227 51-156 (238)
117 PLN02233 ubiquinone biosynthes 98.2 6.9E-06 1.5E-10 84.1 11.1 103 122-227 74-182 (261)
118 COG2521 Predicted archaeal met 98.2 1.7E-06 3.6E-11 87.2 5.8 102 121-225 134-243 (287)
119 PRK00216 ubiE ubiquinone/menaq 98.2 8.1E-06 1.8E-10 80.3 10.6 102 122-226 52-157 (239)
120 PRK15451 tRNA cmo(5)U34 methyl 98.2 8.2E-06 1.8E-10 82.6 10.7 100 122-227 57-164 (247)
121 KOG1122 tRNA and rRNA cytosine 98.2 5.4E-06 1.2E-10 89.4 9.6 105 120-227 240-371 (460)
122 COG0116 Predicted N6-adenine-s 98.2 6.6E-06 1.4E-10 88.4 10.2 103 123-228 193-345 (381)
123 KOG2904 Predicted methyltransf 98.2 8.8E-06 1.9E-10 83.7 10.6 79 121-202 148-230 (328)
124 TIGR01983 UbiG ubiquinone bios 98.2 1.9E-05 4.1E-10 77.7 12.4 101 121-227 45-149 (224)
125 PRK01683 trans-aconitate 2-met 98.2 1E-05 2.2E-10 81.8 10.2 95 122-227 32-130 (258)
126 PF02384 N6_Mtase: N-6 DNA Met 98.2 3.1E-06 6.6E-11 88.0 6.4 106 121-227 46-183 (311)
127 PF05185 PRMT5: PRMT5 arginine 98.1 3.7E-06 8E-11 92.7 7.0 100 121-224 186-294 (448)
128 PLN03075 nicotianamine synthas 98.1 1.7E-05 3.6E-10 83.1 11.3 104 121-227 123-233 (296)
129 KOG1270 Methyltransferases [Co 98.1 5.3E-06 1.1E-10 84.9 7.1 99 121-227 89-195 (282)
130 PF10294 Methyltransf_16: Puta 98.1 2.2E-05 4.8E-10 75.7 11.1 105 119-227 43-156 (173)
131 COG0421 SpeE Spermidine syntha 98.1 9.5E-05 2.1E-09 77.1 16.2 103 123-227 78-190 (282)
132 KOG1499 Protein arginine N-met 98.1 6.8E-06 1.5E-10 87.0 7.6 102 119-226 58-166 (346)
133 PLN02336 phosphoethanolamine N 98.1 1.5E-05 3.3E-10 87.8 10.6 100 121-227 266-369 (475)
134 PRK15068 tRNA mo(5)U34 methylt 98.1 4.1E-05 8.9E-10 81.0 12.8 103 119-227 120-226 (322)
135 PRK08317 hypothetical protein; 98.1 3.5E-05 7.5E-10 75.3 11.4 103 122-229 20-126 (241)
136 TIGR01934 MenG_MenH_UbiE ubiqu 98.1 2.8E-05 6.1E-10 75.7 10.6 100 122-227 40-143 (223)
137 TIGR00740 methyltransferase, p 98.0 2.9E-05 6.3E-10 77.8 10.9 101 122-227 54-161 (239)
138 PRK14103 trans-aconitate 2-met 98.0 2.4E-05 5.2E-10 79.3 10.3 93 122-227 30-126 (255)
139 COG4262 Predicted spermidine s 98.0 3.9E-05 8.5E-10 81.6 12.0 105 123-228 291-408 (508)
140 TIGR02021 BchM-ChlM magnesium 98.0 2.9E-05 6.2E-10 76.8 10.1 73 121-202 55-128 (219)
141 TIGR00452 methyltransferase, p 98.0 6.8E-05 1.5E-09 79.2 12.7 103 119-227 119-225 (314)
142 PTZ00146 fibrillarin; Provisio 98.0 0.00027 5.9E-09 74.0 16.8 101 121-226 132-236 (293)
143 PLN02490 MPBQ/MSBQ methyltrans 98.0 5.2E-05 1.1E-09 80.9 11.4 98 122-227 114-215 (340)
144 PRK10258 biotin biosynthesis p 98.0 4.6E-05 1E-09 76.8 10.6 94 122-227 43-140 (251)
145 KOG2078 tRNA modification enzy 98.0 4.3E-06 9.3E-11 90.1 3.2 65 122-190 250-314 (495)
146 PRK11727 23S rRNA mA1618 methy 98.0 3.1E-05 6.7E-10 82.0 9.6 79 122-203 115-198 (321)
147 PF01135 PCMT: Protein-L-isoas 98.0 2.5E-05 5.3E-10 78.0 8.3 99 121-227 72-172 (209)
148 PTZ00098 phosphoethanolamine N 98.0 2.6E-05 5.6E-10 80.0 8.7 99 121-227 52-156 (263)
149 PRK06922 hypothetical protein; 98.0 4.4E-05 9.6E-10 87.1 11.3 102 121-227 418-537 (677)
150 TIGR03840 TMPT_Se_Te thiopurin 97.9 3.3E-05 7.2E-10 77.1 8.8 99 122-226 35-151 (213)
151 TIGR02072 BioC biotin biosynth 97.9 5.4E-05 1.2E-09 74.2 9.9 97 122-227 35-135 (240)
152 PRK13255 thiopurine S-methyltr 97.9 3.6E-05 7.9E-10 77.1 8.8 99 122-227 38-156 (218)
153 PRK11188 rrmJ 23S rRNA methylt 97.9 5.1E-05 1.1E-09 75.4 9.3 91 122-226 52-164 (209)
154 PF08241 Methyltransf_11: Meth 97.9 1.8E-05 4E-10 66.0 5.0 91 126-225 1-95 (95)
155 TIGR00438 rrmJ cell division p 97.9 7E-05 1.5E-09 72.5 9.6 92 122-227 33-146 (188)
156 PF03848 TehB: Tellurite resis 97.9 3E-05 6.4E-10 76.6 6.9 102 120-230 29-137 (192)
157 COG3897 Predicted methyltransf 97.8 9.9E-06 2.1E-10 79.8 3.1 95 120-225 78-176 (218)
158 PF02353 CMAS: Mycolic acid cy 97.8 8.3E-05 1.8E-09 77.1 10.0 99 121-227 62-166 (273)
159 PRK11705 cyclopropane fatty ac 97.8 0.00011 2.4E-09 79.6 11.4 95 121-227 167-267 (383)
160 KOG1227 Putative methyltransfe 97.8 8.2E-06 1.8E-10 84.7 2.4 100 121-226 194-296 (351)
161 KOG2730 Methylase [General fun 97.8 2.3E-05 5E-10 78.5 5.3 81 121-206 94-178 (263)
162 KOG1500 Protein arginine N-met 97.8 6.4E-05 1.4E-09 79.2 8.3 145 118-291 174-329 (517)
163 PF05401 NodS: Nodulation prot 97.8 4.1E-05 8.8E-10 75.8 6.4 119 124-270 46-171 (201)
164 PF13649 Methyltransf_25: Meth 97.8 4.8E-05 1E-09 66.0 6.2 92 125-221 1-101 (101)
165 TIGR02987 met_A_Alw26 type II 97.7 9.6E-05 2.1E-09 82.8 9.3 81 122-205 32-124 (524)
166 TIGR02716 C20_methyl_CrtF C-20 97.7 0.00023 5E-09 74.1 11.1 99 122-227 150-254 (306)
167 PRK07580 Mg-protoporphyrin IX 97.7 0.0002 4.4E-09 70.6 10.2 71 121-200 63-133 (230)
168 KOG1271 Methyltransferases [Ge 97.6 0.00014 3.1E-09 71.2 7.3 100 124-227 70-181 (227)
169 COG2230 Cfa Cyclopropane fatty 97.6 0.00032 7E-09 73.0 9.9 99 121-227 72-176 (283)
170 COG2518 Pcm Protein-L-isoaspar 97.6 0.00038 8.2E-09 69.6 9.7 96 121-227 72-169 (209)
171 PLN02336 phosphoethanolamine N 97.6 0.00032 6.9E-09 77.4 10.0 97 122-226 38-141 (475)
172 PTZ00338 dimethyladenosine tra 97.6 0.00044 9.5E-09 72.5 10.4 85 122-214 37-122 (294)
173 PLN02585 magnesium protoporphy 97.6 0.00067 1.5E-08 71.8 11.8 76 120-202 143-221 (315)
174 TIGR03438 probable methyltrans 97.5 0.00062 1.3E-08 71.2 11.3 103 122-226 64-176 (301)
175 COG4076 Predicted RNA methylas 97.5 8.4E-05 1.8E-09 73.0 4.3 92 124-224 35-132 (252)
176 KOG3191 Predicted N6-DNA-methy 97.4 0.0013 2.7E-08 64.6 11.0 77 121-203 43-119 (209)
177 PF01861 DUF43: Protein of unk 97.4 0.002 4.2E-08 65.8 12.7 103 118-226 41-148 (243)
178 PRK00536 speE spermidine synth 97.4 0.0012 2.6E-08 68.2 11.4 96 122-227 73-171 (262)
179 cd00315 Cyt_C5_DNA_methylase C 97.3 0.00025 5.4E-09 73.3 5.3 69 124-203 2-71 (275)
180 TIGR03587 Pse_Me-ase pseudamin 97.3 0.001 2.3E-08 65.9 9.1 70 122-202 44-113 (204)
181 PRK11088 rrmA 23S rRNA methylt 97.3 0.00075 1.6E-08 69.3 8.3 94 122-227 86-181 (272)
182 PRK14896 ksgA 16S ribosomal RN 97.3 0.0012 2.6E-08 67.5 9.7 82 122-214 30-112 (258)
183 smart00138 MeTrc Methyltransfe 97.3 0.00044 9.5E-09 71.2 6.1 109 122-231 100-246 (264)
184 COG4976 Predicted methyltransf 97.2 0.0002 4.3E-09 72.4 3.3 100 123-233 127-231 (287)
185 PF02390 Methyltransf_4: Putat 97.2 0.0019 4.1E-08 63.8 10.1 106 124-234 20-139 (195)
186 PF08003 Methyltransf_9: Prote 97.2 0.0031 6.6E-08 66.4 11.9 104 118-227 112-219 (315)
187 PRK00050 16S rRNA m(4)C1402 me 97.2 0.0012 2.6E-08 69.4 8.7 84 122-211 20-106 (296)
188 PF13489 Methyltransf_23: Meth 97.2 0.0011 2.3E-08 61.0 7.3 89 122-227 23-115 (161)
189 PRK00274 ksgA 16S ribosomal RN 97.2 0.0026 5.6E-08 65.6 10.5 84 122-215 43-127 (272)
190 KOG1540 Ubiquinone biosynthesi 97.1 0.004 8.7E-08 64.0 11.3 102 121-224 100-211 (296)
191 PF08242 Methyltransf_12: Meth 97.1 5.1E-05 1.1E-09 65.3 -2.4 94 126-223 1-99 (99)
192 PF03291 Pox_MCEL: mRNA cappin 96.9 0.0024 5.2E-08 68.1 7.8 111 122-234 63-193 (331)
193 PRK13256 thiopurine S-methyltr 96.9 0.0053 1.1E-07 62.3 9.6 101 122-226 44-162 (226)
194 PRK06202 hypothetical protein; 96.8 0.0022 4.7E-08 64.1 6.5 94 122-223 61-163 (232)
195 TIGR00755 ksgA dimethyladenosi 96.8 0.0099 2.1E-07 60.5 11.1 83 122-215 30-116 (253)
196 PF05724 TPMT: Thiopurine S-me 96.8 0.00072 1.6E-08 67.9 2.7 102 122-227 38-156 (218)
197 PF06080 DUF938: Protein of un 96.8 0.0063 1.4E-07 60.8 9.2 156 124-293 28-202 (204)
198 PF12147 Methyltransf_20: Puta 96.7 0.015 3.4E-07 60.9 11.2 105 121-227 135-249 (311)
199 PHA01634 hypothetical protein 96.7 0.0052 1.1E-07 57.3 6.8 78 119-205 26-103 (156)
200 PF04445 SAM_MT: Putative SAM- 96.6 0.0023 5E-08 65.1 4.5 78 124-204 78-162 (234)
201 KOG2899 Predicted methyltransf 96.5 0.0088 1.9E-07 61.2 8.1 107 119-226 56-208 (288)
202 PF13578 Methyltransf_24: Meth 96.5 0.00089 1.9E-08 58.6 0.8 96 127-225 2-103 (106)
203 TIGR01444 fkbM_fam methyltrans 96.4 0.01 2.2E-07 54.3 7.2 57 124-184 1-57 (143)
204 TIGR00478 tly hemolysin TlyA f 96.4 0.0084 1.8E-07 60.8 7.0 93 120-225 74-169 (228)
205 KOG2915 tRNA(1-methyladenosine 96.3 0.023 5E-07 59.0 9.9 101 121-224 105-207 (314)
206 COG0220 Predicted S-adenosylme 96.2 0.058 1.2E-06 54.8 12.2 107 123-234 50-170 (227)
207 PF02527 GidB: rRNA small subu 96.1 0.029 6.3E-07 55.1 9.2 97 124-226 51-147 (184)
208 PRK05785 hypothetical protein; 96.1 0.035 7.6E-07 55.8 9.9 85 122-220 52-140 (226)
209 COG0357 GidB Predicted S-adeno 96.1 0.17 3.6E-06 51.2 14.5 143 122-298 68-212 (215)
210 PF00145 DNA_methylase: C-5 cy 96.1 0.0073 1.6E-07 62.1 4.9 68 124-203 2-70 (335)
211 TIGR02081 metW methionine bios 96.0 0.039 8.5E-07 53.6 9.6 90 122-226 14-108 (194)
212 KOG2198 tRNA cytosine-5-methyl 95.9 0.04 8.7E-07 59.4 9.5 104 121-227 155-296 (375)
213 COG3286 Uncharacterized protei 95.8 0.049 1.1E-06 53.7 9.0 75 394-472 55-130 (204)
214 COG1568 Predicted methyltransf 95.8 0.033 7.2E-07 58.0 8.0 105 118-227 149-260 (354)
215 COG0270 Dcm Site-specific DNA 95.6 0.024 5.1E-07 60.3 6.7 72 122-203 3-76 (328)
216 PF09840 DUF2067: Uncharacteri 95.6 0.056 1.2E-06 53.6 8.8 75 394-472 52-127 (190)
217 TIGR00675 dcm DNA-methyltransf 95.6 0.019 4.2E-07 60.6 5.7 68 125-203 1-68 (315)
218 PF07021 MetW: Methionine bios 95.5 0.06 1.3E-06 53.4 8.3 143 122-288 14-172 (193)
219 PF11599 AviRa: RRNA methyltra 95.4 0.057 1.2E-06 54.5 8.1 103 122-227 52-214 (246)
220 PRK01544 bifunctional N5-gluta 95.3 0.19 4E-06 56.8 12.7 109 121-234 347-468 (506)
221 PF04816 DUF633: Family of unk 95.2 0.065 1.4E-06 53.6 7.8 139 125-300 1-142 (205)
222 PF00891 Methyltransf_2: O-met 95.1 0.051 1.1E-06 54.5 6.7 89 123-226 102-198 (241)
223 PF01728 FtsJ: FtsJ-like methy 95.0 0.049 1.1E-06 52.2 6.2 91 122-226 24-138 (181)
224 KOG2671 Putative RNA methylase 95.0 0.011 2.4E-07 63.1 1.6 80 121-205 208-296 (421)
225 PF05430 Methyltransf_30: S-ad 95.0 0.034 7.3E-07 51.4 4.6 52 176-227 32-90 (124)
226 TIGR00006 S-adenosyl-methyltra 94.6 0.16 3.5E-06 53.8 9.2 85 122-212 21-109 (305)
227 KOG1661 Protein-L-isoaspartate 94.5 0.13 2.8E-06 51.8 7.7 102 120-226 81-192 (237)
228 PRK11760 putative 23S rRNA C24 94.5 0.75 1.6E-05 49.7 13.8 142 120-297 210-355 (357)
229 PF06962 rRNA_methylase: Putat 94.4 0.13 2.8E-06 48.7 7.2 78 148-227 1-92 (140)
230 PF05971 Methyltransf_10: Prot 94.4 0.21 4.5E-06 52.8 9.3 136 122-278 103-250 (299)
231 PRK11524 putative methyltransf 94.2 0.086 1.9E-06 54.8 6.2 53 175-227 7-80 (284)
232 PRK10458 DNA cytosine methylas 93.9 0.12 2.7E-06 57.7 7.0 43 122-166 88-130 (467)
233 PLN02232 ubiquinone biosynthes 93.9 0.18 3.9E-06 47.9 7.2 76 150-227 1-81 (160)
234 PF01555 N6_N4_Mtase: DNA meth 93.9 0.1 2.2E-06 50.6 5.6 41 121-164 191-231 (231)
235 PF03059 NAS: Nicotianamine sy 93.9 0.26 5.6E-06 51.6 8.8 100 123-227 122-230 (276)
236 PRK01747 mnmC bifunctional tRN 93.5 0.37 8E-06 55.8 10.1 111 122-232 58-211 (662)
237 PRK04148 hypothetical protein; 93.2 0.13 2.7E-06 48.4 4.7 89 122-226 17-108 (134)
238 KOG1562 Spermidine synthase [A 92.9 0.57 1.2E-05 49.5 9.4 104 122-227 122-236 (337)
239 KOG1975 mRNA cap methyltransfe 92.6 0.37 7.9E-06 51.5 7.5 110 122-233 118-243 (389)
240 PF05219 DREV: DREV methyltran 92.3 0.86 1.9E-05 47.4 9.6 142 121-291 94-256 (265)
241 COG1189 Predicted rRNA methyla 92.1 0.44 9.6E-06 48.8 7.3 139 119-279 77-220 (245)
242 PF01269 Fibrillarin: Fibrilla 92.1 0.83 1.8E-05 46.5 9.1 101 121-226 73-177 (229)
243 COG0030 KsgA Dimethyladenosine 91.9 1 2.2E-05 46.8 9.8 86 122-215 31-117 (259)
244 COG0286 HsdM Type I restrictio 91.7 0.72 1.6E-05 51.9 9.0 78 124-203 189-273 (489)
245 PF02086 MethyltransfD12: D12 91.6 0.17 3.6E-06 50.9 3.6 39 122-163 21-59 (260)
246 PRK13699 putative methylase; P 91.6 0.4 8.7E-06 48.5 6.3 50 178-227 3-72 (227)
247 PF00398 RrnaAD: Ribosomal RNA 91.3 0.5 1.1E-05 48.5 6.8 86 122-215 31-119 (262)
248 PRK09880 L-idonate 5-dehydroge 91.1 1.1 2.3E-05 47.2 9.1 97 121-227 169-266 (343)
249 COG3963 Phospholipid N-methylt 90.8 1.5 3.4E-05 43.0 9.0 97 121-227 48-156 (194)
250 KOG1501 Arginine N-methyltrans 90.7 0.47 1E-05 52.4 6.0 56 123-182 68-123 (636)
251 COG2384 Predicted SAM-dependen 90.7 0.64 1.4E-05 47.2 6.6 93 122-218 17-111 (226)
252 PF05891 Methyltransf_PK: AdoM 90.6 0.36 7.8E-06 48.8 4.8 99 122-226 56-160 (218)
253 PRK11524 putative methyltransf 90.6 0.48 1E-05 49.3 6.0 44 121-167 208-251 (284)
254 PRK13699 putative methylase; P 89.8 0.72 1.6E-05 46.7 6.2 46 121-169 163-208 (227)
255 COG4106 Tam Trans-aconitate me 89.5 0.99 2.2E-05 46.0 6.8 95 122-227 31-129 (257)
256 PF00107 ADH_zinc_N: Zinc-bind 89.2 0.91 2E-05 40.4 5.8 87 131-227 1-89 (130)
257 PRK10611 chemotaxis methyltran 89.1 0.99 2.2E-05 47.5 6.9 110 122-231 116-266 (287)
258 PF08123 DOT1: Histone methyla 88.9 3.7 8E-05 41.1 10.5 110 122-237 43-164 (205)
259 KOG0820 Ribosomal RNA adenine 88.6 1.4 2.9E-05 46.3 7.3 82 122-211 59-141 (315)
260 PF01795 Methyltransf_5: MraW 88.6 1.1 2.4E-05 47.6 6.9 86 122-213 21-111 (310)
261 KOG2361 Predicted methyltransf 87.9 0.65 1.4E-05 47.8 4.4 99 124-226 74-182 (264)
262 KOG3201 Uncharacterized conser 87.5 0.32 7E-06 47.4 1.9 109 118-227 26-140 (201)
263 COG0293 FtsJ 23S rRNA methylas 86.8 3.5 7.6E-05 41.5 8.8 92 122-227 46-159 (205)
264 COG1439 Predicted nucleic acid 86.7 0.96 2.1E-05 44.4 4.6 109 195-360 55-164 (177)
265 PF04378 RsmJ: Ribosomal RNA s 86.6 2 4.4E-05 44.3 7.2 92 126-225 62-162 (245)
266 TIGR00497 hsdM type I restrict 85.7 2.6 5.7E-05 47.4 8.2 82 122-204 218-304 (501)
267 PF09723 Zn-ribbon_8: Zinc rib 85.6 1.2 2.5E-05 33.5 3.6 29 312-357 4-34 (42)
268 KOG0024 Sorbitol dehydrogenase 85.4 5 0.00011 43.1 9.5 97 121-226 169-272 (354)
269 PF10609 ParA: ParA/MinD ATPas 85.2 2.5 5.3E-05 36.5 5.9 31 196-227 2-33 (81)
270 COG0500 SmtA SAM-dependent met 85.0 11 0.00023 31.3 9.7 98 125-227 52-155 (257)
271 COG0275 Predicted S-adenosylme 84.7 4.6 0.0001 42.9 8.8 86 122-212 24-113 (314)
272 PF07942 N2227: N2227-like pro 84.5 8.5 0.00018 40.3 10.7 137 122-279 57-238 (270)
273 KOG3010 Methyltransferase [Gen 84.4 0.92 2E-05 46.7 3.4 98 124-227 36-137 (261)
274 PRK12380 hydrogenase nickel in 84.3 3.4 7.3E-05 37.6 6.7 66 255-321 1-78 (113)
275 PRK00398 rpoP DNA-directed RNA 84.1 0.93 2E-05 34.5 2.5 33 311-361 1-33 (46)
276 KOG4300 Predicted methyltransf 83.8 4.4 9.4E-05 41.2 7.8 98 124-226 79-181 (252)
277 PRK03681 hypA hydrogenase nick 83.7 3.7 8E-05 37.4 6.7 67 255-322 1-79 (114)
278 COG1064 AdhP Zn-dependent alco 83.7 4.8 0.0001 43.5 8.6 89 124-227 170-259 (339)
279 KOG2793 Putative N2,N2-dimethy 83.7 5.4 0.00012 41.3 8.7 99 122-223 87-195 (248)
280 smart00834 CxxC_CXXC_SSSS Puta 83.6 1.7 3.7E-05 31.7 3.7 11 312-322 4-14 (41)
281 TIGR01202 bchC 2-desacetyl-2-h 82.7 3.4 7.5E-05 42.9 7.0 79 128-226 152-230 (308)
282 TIGR00100 hypA hydrogenase nic 82.6 4.7 0.0001 36.8 7.0 66 255-321 1-78 (115)
283 PF01155 HypA: Hydrogenase exp 81.4 4 8.6E-05 37.1 6.0 67 255-322 1-79 (113)
284 PRK00564 hypA hydrogenase nick 81.2 3.9 8.5E-05 37.4 5.9 66 255-321 1-79 (117)
285 TIGR03451 mycoS_dep_FDH mycoth 80.3 9.9 0.00021 40.2 9.5 97 122-227 177-276 (358)
286 KOG1709 Guanidinoacetate methy 79.0 12 0.00027 38.3 9.0 101 120-226 100-205 (271)
287 PF02082 Rrf2: Transcriptional 78.5 3.9 8.5E-05 34.6 4.8 55 414-469 26-82 (83)
288 COG1889 NOP1 Fibrillarin-like 78.5 10 0.00022 38.5 8.2 101 121-227 76-182 (231)
289 PF01739 CheR: CheR methyltran 78.0 4.1 8.9E-05 40.5 5.4 110 122-232 32-180 (196)
290 PF13679 Methyltransf_32: Meth 77.7 7.7 0.00017 35.9 6.9 47 122-170 26-77 (141)
291 TIGR02605 CxxC_CxxC_SSSS putat 77.2 3.1 6.8E-05 32.1 3.5 12 312-323 4-16 (52)
292 PRK10309 galactitol-1-phosphat 77.1 15 0.00032 38.5 9.7 97 122-226 161-259 (347)
293 TIGR00354 polC DNA polymerase, 76.8 2.2 4.7E-05 51.2 3.5 34 350-384 638-671 (1095)
294 TIGR03366 HpnZ_proposed putati 76.7 13 0.00028 37.9 8.9 95 122-227 121-218 (280)
295 COG3392 Adenine-specific DNA m 76.7 1.4 3.1E-05 45.9 1.8 45 122-170 28-72 (330)
296 cd08239 THR_DH_like L-threonin 76.6 17 0.00036 37.8 9.8 97 122-227 164-262 (339)
297 PRK12496 hypothetical protein; 75.3 1.8 3.9E-05 41.9 2.0 12 309-320 123-134 (164)
298 cd08281 liver_ADH_like1 Zinc-d 74.6 17 0.00036 38.7 9.3 96 122-226 192-289 (371)
299 PF00072 Response_reg: Respons 74.6 13 0.00029 31.4 7.1 78 149-230 1-82 (112)
300 cd08293 PTGR2 Prostaglandin re 74.6 19 0.0004 37.4 9.5 95 123-226 156-253 (345)
301 COG1063 Tdh Threonine dehydrog 74.2 13 0.00028 39.8 8.4 96 124-228 171-270 (350)
302 TIGR02822 adh_fam_2 zinc-bindi 73.5 16 0.00035 38.3 8.8 87 122-227 166-254 (329)
303 cd08294 leukotriene_B4_DH_like 73.4 19 0.00041 36.9 9.1 94 122-226 144-240 (329)
304 COG1198 PriA Primosomal protei 71.8 3.5 7.5E-05 48.8 3.6 52 307-364 438-491 (730)
305 COG2260 Predicted Zn-ribbon RN 70.1 2.9 6.2E-05 34.0 1.7 20 350-369 18-37 (59)
306 PLN02740 Alcohol dehydrogenase 69.9 26 0.00056 37.5 9.5 96 122-226 199-299 (381)
307 TIGR02825 B4_12hDH leukotriene 68.8 30 0.00065 35.8 9.4 95 121-227 138-237 (325)
308 PF07091 FmrO: Ribosomal RNA m 68.7 16 0.00034 38.0 7.1 71 122-200 106-177 (251)
309 PRK00762 hypA hydrogenase nick 68.6 16 0.00034 33.8 6.5 65 255-321 1-77 (124)
310 cd08291 ETR_like_1 2-enoyl thi 68.0 42 0.00091 34.7 10.3 89 128-227 152-242 (324)
311 COG0604 Qor NADPH:quinone redu 67.9 23 0.0005 37.7 8.5 91 126-227 149-241 (326)
312 cd05278 FDH_like Formaldehyde 67.6 55 0.0012 33.8 11.1 97 121-226 167-266 (347)
313 PRK00420 hypothetical protein; 67.1 6.6 0.00014 36.0 3.6 33 312-363 22-54 (112)
314 PF09243 Rsm22: Mitochondrial 66.8 11 0.00023 39.3 5.6 48 119-167 31-79 (274)
315 cd08230 glucose_DH Glucose deh 66.5 29 0.00062 36.6 8.9 93 121-226 172-268 (355)
316 cd08277 liver_alcohol_DH_like 66.4 73 0.0016 33.8 12.0 96 122-226 185-285 (365)
317 cd08283 FDH_like_1 Glutathione 66.0 44 0.00096 35.8 10.4 99 121-227 184-306 (386)
318 PF09339 HTH_IclR: IclR helix- 66.0 5.8 0.00013 30.6 2.7 47 394-444 3-49 (52)
319 COG1743 Adenine-specific DNA m 65.9 5.7 0.00012 47.0 3.6 47 120-169 89-135 (875)
320 cd08237 ribitol-5-phosphate_DH 65.9 25 0.00054 37.0 8.3 88 122-227 164-256 (341)
321 PF03484 B5: tRNA synthetase B 65.6 13 0.00029 30.6 4.9 58 412-470 4-68 (70)
322 KOG0822 Protein kinase inhibit 65.4 13 0.00027 42.6 6.1 97 124-224 370-475 (649)
323 PRK07102 short chain dehydroge 65.2 1.1E+02 0.0024 29.9 12.3 74 124-202 3-84 (243)
324 TIGR03201 dearomat_had 6-hydro 65.2 34 0.00073 36.0 9.1 96 122-226 167-271 (349)
325 PLN02827 Alcohol dehydrogenase 65.2 28 0.00061 37.3 8.7 97 121-226 193-294 (378)
326 PRK09424 pntA NAD(P) transhydr 64.5 45 0.00099 38.0 10.4 101 120-229 163-287 (509)
327 PRK14892 putative transcriptio 64.4 11 0.00025 33.7 4.5 55 307-381 15-75 (99)
328 smart00659 RPOLCX RNA polymera 64.3 6.1 0.00013 30.2 2.4 12 349-360 19-30 (44)
329 PF04989 CmcI: Cephalosporin h 62.9 7.7 0.00017 39.1 3.6 105 120-228 31-148 (206)
330 COG2961 ComJ Protein involved 62.8 21 0.00045 37.3 6.6 71 125-203 92-165 (279)
331 COG0863 DNA modification methy 62.7 14 0.0003 37.8 5.5 48 120-170 221-268 (302)
332 PRK04351 hypothetical protein; 62.7 6.6 0.00014 37.5 2.9 38 310-363 109-146 (149)
333 COG1996 RPC10 DNA-directed RNA 62.3 5.9 0.00013 31.2 2.0 34 310-361 3-36 (49)
334 cd08265 Zn_ADH3 Alcohol dehydr 61.9 49 0.0011 35.4 9.7 96 122-226 204-306 (384)
335 COG3129 Predicted SAM-dependen 60.4 11 0.00023 39.1 4.0 77 122-202 79-161 (292)
336 PRK08339 short chain dehydroge 60.3 1.4E+02 0.003 30.1 12.2 61 120-185 6-68 (263)
337 TIGR00738 rrf2_super rrf2 fami 60.1 44 0.00095 30.2 7.8 58 413-471 25-84 (132)
338 PRK07832 short chain dehydroge 59.4 2E+02 0.0043 28.9 13.4 40 128-168 5-46 (272)
339 cd00729 rubredoxin_SM Rubredox 59.4 12 0.00025 27.0 3.0 10 313-322 2-11 (34)
340 PRK08444 hypothetical protein; 59.2 1.1E+02 0.0024 33.2 11.9 119 350-472 61-200 (353)
341 PRK13130 H/ACA RNA-protein com 59.2 7.9 0.00017 31.2 2.3 34 312-369 4-37 (56)
342 PRK11920 rirA iron-responsive 58.4 30 0.00066 32.9 6.6 71 396-471 11-83 (153)
343 cd08295 double_bond_reductase_ 57.7 59 0.0013 33.9 9.2 96 121-226 151-250 (338)
344 COG1997 RPL43A Ribosomal prote 57.6 12 0.00026 32.9 3.3 48 303-370 25-72 (89)
345 PF13248 zf-ribbon_3: zinc-rib 57.3 5 0.00011 27.1 0.8 10 350-359 17-26 (26)
346 PF10571 UPF0547: Uncharacteri 56.8 7.9 0.00017 26.4 1.7 11 349-359 14-24 (26)
347 TIGR03439 methyl_EasF probable 56.7 1.3E+02 0.0027 32.4 11.6 120 122-247 77-212 (319)
348 PRK06266 transcription initiat 56.6 10 0.00022 37.3 3.1 44 311-379 115-158 (178)
349 PF13719 zinc_ribbon_5: zinc-r 56.0 8.5 0.00018 28.1 1.9 35 313-360 2-36 (37)
350 cd08232 idonate-5-DH L-idonate 55.8 1.1E+02 0.0023 31.7 10.7 95 121-226 165-261 (339)
351 PRK14873 primosome assembly pr 55.6 19 0.00042 42.3 5.7 15 308-322 387-401 (665)
352 PF08351 DUF1726: Domain of un 55.3 24 0.00053 30.9 5.0 59 192-251 9-68 (92)
353 PF14353 CpXC: CpXC protein 55.2 6.1 0.00013 36.1 1.3 18 348-365 37-54 (128)
354 PF01555 N6_N4_Mtase: DNA meth 55.0 12 0.00025 36.1 3.3 32 196-227 2-56 (231)
355 cd08285 NADP_ADH NADP(H)-depen 55.0 71 0.0015 33.4 9.4 95 122-225 167-264 (351)
356 KOG2912 Predicted DNA methylas 55.0 11 0.00024 40.5 3.3 71 131-203 110-187 (419)
357 KOG2920 Predicted methyltransf 54.6 8 0.00017 40.7 2.1 40 119-160 114-153 (282)
358 COG1062 AdhC Zn-dependent alco 54.4 62 0.0014 35.3 8.7 95 124-227 189-285 (366)
359 PHA02518 ParA-like protein; Pr 54.1 43 0.00094 32.1 7.1 77 144-226 28-106 (211)
360 TIGR02818 adh_III_F_hyde S-(hy 54.1 75 0.0016 33.8 9.5 96 122-226 186-286 (368)
361 TIGR03700 mena_SCO4494 putativ 53.8 1.5E+02 0.0033 31.9 11.7 116 350-472 60-199 (351)
362 PF04135 Nop10p: Nucleolar RNA 53.7 13 0.00029 29.6 2.8 34 312-369 4-37 (53)
363 PF10354 DUF2431: Domain of un 53.7 53 0.0012 31.7 7.5 92 134-227 9-125 (166)
364 COG0745 OmpR Response regulato 53.7 82 0.0018 31.9 9.2 74 148-228 2-81 (229)
365 PF05191 ADK_lid: Adenylate ki 53.7 14 0.0003 27.1 2.6 15 346-360 18-32 (36)
366 TIGR02010 IscR iron-sulfur clu 53.3 43 0.00093 30.9 6.6 72 396-471 11-84 (135)
367 cd08254 hydroxyacyl_CoA_DH 6-h 53.3 1.2E+02 0.0025 31.1 10.5 96 122-227 166-263 (338)
368 PRK11014 transcriptional repre 53.1 23 0.0005 32.9 4.8 58 413-471 25-84 (141)
369 TIGR02819 fdhA_non_GSH formald 53.1 91 0.002 33.9 10.1 97 122-227 186-299 (393)
370 PLN03154 putative allyl alcoho 53.1 69 0.0015 33.9 9.0 95 121-226 158-257 (348)
371 PRK09422 ethanol-active dehydr 53.0 79 0.0017 32.6 9.2 88 130-227 172-261 (338)
372 PF08220 HTH_DeoR: DeoR-like h 52.7 28 0.00061 27.5 4.5 48 395-448 1-48 (57)
373 cd08300 alcohol_DH_class_III c 52.4 89 0.0019 33.1 9.7 96 122-226 187-287 (368)
374 TIGR00423 radical SAM domain p 52.3 1.8E+02 0.0039 30.6 11.8 116 350-472 17-156 (309)
375 TIGR02098 MJ0042_CXXC MJ0042 f 52.2 11 0.00025 27.1 2.0 35 313-360 2-36 (38)
376 smart00874 B5 tRNA synthetase 52.2 53 0.0012 26.6 6.3 58 411-469 3-68 (71)
377 cd08238 sorbose_phosphate_red 52.2 1.1E+02 0.0024 33.2 10.5 98 122-225 176-286 (410)
378 COG3947 Response regulator con 52.0 46 0.001 35.7 7.1 76 148-228 2-81 (361)
379 PTZ00357 methyltransferase; Pr 51.9 66 0.0014 38.3 8.9 101 123-223 702-831 (1072)
380 cd08233 butanediol_DH_like (2R 51.9 99 0.0021 32.3 9.9 89 128-225 180-270 (351)
381 KOG1541 Predicted protein carb 51.5 19 0.00042 37.1 4.2 40 122-164 51-90 (270)
382 cd08301 alcohol_DH_plants Plan 51.1 85 0.0018 33.2 9.3 96 122-226 188-288 (369)
383 TIGR00571 dam DNA adenine meth 50.9 15 0.00032 38.0 3.4 34 124-162 28-61 (266)
384 PF09082 DUF1922: Domain of un 50.8 9.3 0.0002 32.0 1.5 31 312-362 2-32 (68)
385 COG1645 Uncharacterized Zn-fin 49.5 8.9 0.00019 36.1 1.3 13 310-322 25-37 (131)
386 PRK10857 DNA-binding transcrip 49.3 28 0.00061 33.6 4.8 58 413-471 25-84 (164)
387 COG1592 Rubrerythrin [Energy p 48.6 15 0.00032 35.9 2.8 9 313-321 134-142 (166)
388 COG1096 Predicted RNA-binding 48.5 31 0.00067 34.4 5.0 15 308-322 143-158 (188)
389 COG1352 CheR Methylase of chem 48.5 40 0.00087 35.3 6.1 110 121-232 96-246 (268)
390 PF06044 DRP: Dam-replacing fa 48.0 5.9 0.00013 40.8 -0.0 34 314-361 32-65 (254)
391 KOG2360 Proliferation-associat 47.8 19 0.0004 39.7 3.6 80 121-203 213-293 (413)
392 PRK10083 putative oxidoreducta 47.2 92 0.002 32.1 8.7 90 130-227 170-259 (339)
393 PF13240 zinc_ribbon_2: zinc-r 47.2 10 0.00022 25.1 0.9 10 350-359 14-23 (23)
394 PF12172 DUF35_N: Rubredoxin-l 47.0 16 0.00034 26.4 2.0 14 311-324 9-22 (37)
395 PF08279 HTH_11: HTH domain; 46.9 42 0.0009 25.7 4.6 47 395-445 1-47 (55)
396 cd08242 MDR_like Medium chain 46.8 1E+02 0.0022 31.5 8.9 87 122-225 156-243 (319)
397 cd00092 HTH_CRP helix_turn_hel 46.6 34 0.00074 26.8 4.2 35 412-446 24-58 (67)
398 PF13545 HTH_Crp_2: Crp-like h 46.1 13 0.00027 30.3 1.6 35 410-444 25-59 (76)
399 KOG0919 C-5 cytosine-specific 45.9 20 0.00042 37.4 3.2 80 122-212 3-85 (338)
400 cd05280 MDR_yhdh_yhfp Yhdh and 45.6 1.2E+02 0.0027 30.6 9.2 85 130-226 157-242 (325)
401 PRK08324 short chain dehydroge 45.5 3.6E+02 0.0079 31.6 14.1 76 120-202 420-506 (681)
402 PF07279 DUF1442: Protein of u 45.2 2.1E+02 0.0046 29.3 10.4 99 121-225 41-146 (218)
403 cd08243 quinone_oxidoreductase 45.1 1.7E+02 0.0038 29.3 10.1 87 128-226 151-237 (320)
404 PF07282 OrfB_Zn_ribbon: Putat 44.6 43 0.00093 27.1 4.6 20 261-280 2-21 (69)
405 PRK12330 oxaloacetate decarbox 44.3 1.7E+02 0.0037 33.5 10.6 93 368-472 149-275 (499)
406 PRK05978 hypothetical protein; 44.2 11 0.00024 36.2 1.1 37 309-362 29-65 (148)
407 TIGR00373 conserved hypothetic 43.5 25 0.00054 33.8 3.5 46 311-381 107-152 (158)
408 PRK08267 short chain dehydroge 42.6 2.8E+02 0.0061 27.4 11.1 67 128-201 6-84 (260)
409 cd00350 rubredoxin_like Rubred 41.7 23 0.00051 25.1 2.2 10 313-322 1-10 (33)
410 cd08263 Zn_ADH10 Alcohol dehyd 41.5 1.4E+02 0.0031 31.4 9.2 97 122-227 188-287 (367)
411 PF14056 DUF4250: Domain of un 41.5 45 0.00098 26.9 4.0 43 399-446 8-50 (55)
412 COG2331 Uncharacterized protei 41.5 8.8 0.00019 32.9 0.0 12 311-322 10-21 (82)
413 cd05188 MDR Medium chain reduc 41.3 1.4E+02 0.003 29.0 8.5 97 121-227 134-232 (271)
414 KOG1596 Fibrillarin and relate 41.1 77 0.0017 33.2 6.6 100 121-226 156-260 (317)
415 COG1321 TroR Mn-dependent tran 41.0 39 0.00085 32.4 4.4 73 395-471 7-80 (154)
416 PRK05703 flhF flagellar biosyn 41.0 1.5E+02 0.0033 32.9 9.6 76 125-205 225-310 (424)
417 COG0375 HybF Zn finger protein 40.8 86 0.0019 29.0 6.3 22 255-276 1-23 (115)
418 cd05285 sorbitol_DH Sorbitol d 40.6 2.7E+02 0.0058 29.0 10.9 97 121-226 162-264 (343)
419 TIGR03499 FlhF flagellar biosy 40.6 1E+02 0.0022 32.1 7.8 64 135-204 214-282 (282)
420 PF03604 DNA_RNApol_7kD: DNA d 40.5 18 0.0004 25.9 1.5 12 349-360 17-28 (32)
421 PRK07523 gluconate 5-dehydroge 40.4 3.7E+02 0.008 26.4 15.3 77 120-202 8-95 (255)
422 TIGR03551 F420_cofH 7,8-dideme 40.2 3E+02 0.0065 29.4 11.4 117 350-472 51-190 (343)
423 PRK05855 short chain dehydroge 40.0 5.5E+02 0.012 28.4 13.9 78 119-202 312-400 (582)
424 TIGR00595 priA primosomal prot 39.8 35 0.00075 38.8 4.4 15 308-322 217-231 (505)
425 smart00346 HTH_ICLR helix_turn 39.8 44 0.00096 27.9 4.1 50 393-446 4-53 (91)
426 smart00420 HTH_DEOR helix_turn 39.8 41 0.00088 24.7 3.5 41 398-443 4-44 (53)
427 cd08284 FDH_like_2 Glutathione 39.3 2.4E+02 0.0052 29.1 10.3 95 122-226 168-265 (344)
428 PF01325 Fe_dep_repress: Iron 39.3 18 0.00039 29.1 1.5 32 413-444 22-53 (60)
429 PRK03824 hypA hydrogenase nick 39.3 25 0.00054 33.0 2.7 15 309-323 66-80 (135)
430 PF01780 Ribosomal_L37ae: Ribo 39.1 16 0.00034 32.3 1.2 51 313-383 35-85 (90)
431 COG0846 SIR2 NAD-dependent pro 39.1 44 0.00096 34.7 4.7 36 350-385 147-182 (250)
432 PF09538 FYDLN_acid: Protein o 39.1 16 0.00034 33.3 1.2 35 309-362 5-39 (108)
433 PF11023 DUF2614: Protein of u 38.7 18 0.00039 33.2 1.5 11 351-361 87-97 (114)
434 cd08240 6_hydroxyhexanoate_dh_ 38.6 1.7E+02 0.0037 30.4 9.2 96 122-226 176-273 (350)
435 cd00090 HTH_ARSR Arsenical Res 38.5 59 0.0013 25.1 4.5 56 414-470 21-76 (78)
436 TIGR00692 tdh L-threonine 3-de 38.5 2.3E+02 0.0049 29.4 10.0 97 121-226 161-260 (340)
437 PF13717 zinc_ribbon_4: zinc-r 38.5 24 0.00052 25.7 1.9 34 313-359 2-35 (36)
438 PRK10955 DNA-binding transcrip 38.4 2.7E+02 0.0059 26.4 9.9 74 148-227 3-79 (232)
439 smart00345 HTH_GNTR helix_turn 38.3 59 0.0013 24.5 4.3 29 415-443 22-50 (60)
440 PRK05926 hypothetical protein; 38.1 1.9E+02 0.0041 31.6 9.6 77 392-472 129-218 (370)
441 PRK06194 hypothetical protein; 37.8 1.2E+02 0.0025 30.7 7.5 58 122-185 6-65 (287)
442 COG5459 Predicted rRNA methyla 37.7 89 0.0019 34.5 6.7 105 118-226 110-224 (484)
443 PRK05876 short chain dehydroge 37.6 4.5E+02 0.0098 26.6 13.8 77 120-202 4-91 (275)
444 PRK14042 pyruvate carboxylase 37.6 1.6E+02 0.0036 34.3 9.4 92 368-472 148-272 (596)
445 PRK14138 NAD-dependent deacety 37.2 33 0.00072 35.2 3.4 35 350-385 144-178 (244)
446 cd08278 benzyl_alcohol_DH Benz 37.2 2.1E+02 0.0045 30.3 9.6 96 122-227 187-285 (365)
447 PF07015 VirC1: VirC1 protein; 37.1 94 0.002 32.0 6.6 69 144-215 29-104 (231)
448 COG1660 Predicted P-loop-conta 37.0 35 0.00077 35.9 3.5 16 515-532 186-201 (286)
449 COG1400 SEC65 Signal recogniti 36.8 23 0.00051 31.4 1.9 27 419-445 23-49 (93)
450 PF10237 N6-adenineMlase: Prob 36.6 54 0.0012 31.8 4.6 83 123-220 27-115 (162)
451 COG1066 Sms Predicted ATP-depe 36.5 19 0.00042 40.0 1.7 63 411-475 123-210 (456)
452 PRK08265 short chain dehydroge 36.3 4.5E+02 0.0097 26.2 12.5 55 122-185 6-62 (261)
453 KOG2352 Predicted spermine/spe 36.2 51 0.0011 37.3 4.9 90 133-226 307-415 (482)
454 TIGR00416 sms DNA repair prote 35.9 20 0.00043 40.2 1.7 10 313-322 7-16 (454)
455 PRK15029 arginine decarboxylas 35.6 1.7E+02 0.0037 35.2 9.3 134 148-294 2-159 (755)
456 cd07377 WHTH_GntR Winged helix 35.6 62 0.0013 24.9 4.1 33 413-446 25-57 (66)
457 cd08231 MDR_TM0436_like Hypoth 35.3 2.4E+02 0.0053 29.5 9.7 98 121-227 177-280 (361)
458 PLN02702 L-idonate 5-dehydroge 35.3 2.7E+02 0.0058 29.3 10.0 97 122-227 182-285 (364)
459 TIGR00518 alaDH alanine dehydr 35.2 3.1E+02 0.0067 29.8 10.6 101 120-230 165-270 (370)
460 PF14319 Zn_Tnp_IS91: Transpos 35.2 36 0.00078 30.9 2.9 15 311-325 40-54 (111)
461 cd08289 MDR_yhfp_like Yhfp put 35.1 2.4E+02 0.0053 28.6 9.5 86 130-227 157-243 (326)
462 PF05050 Methyltransf_21: Meth 34.9 91 0.002 28.3 5.7 46 127-172 1-51 (167)
463 TIGR00354 polC DNA polymerase, 34.9 37 0.00081 41.3 3.7 24 229-252 947-970 (1095)
464 cd08292 ETR_like_2 2-enoyl thi 34.8 1.8E+02 0.0038 29.6 8.4 87 130-227 150-238 (324)
465 COG2176 PolC DNA polymerase II 34.8 34 0.00073 42.6 3.4 39 314-363 915-953 (1444)
466 PRK05580 primosome assembly pr 34.6 44 0.00096 39.3 4.3 16 307-322 384-399 (679)
467 PF03141 Methyltransf_29: Puta 34.5 39 0.00083 38.5 3.6 93 124-227 120-219 (506)
468 cd05288 PGDH Prostaglandin deh 34.4 1.5E+02 0.0032 30.3 7.7 94 122-226 146-243 (329)
469 PF03444 HrcA_DNA-bdg: Winged 34.3 56 0.0012 28.2 3.7 66 394-461 4-71 (78)
470 PRK10529 DNA-binding transcrip 34.2 3.7E+02 0.0079 25.5 10.0 74 148-227 3-80 (225)
471 PRK06484 short chain dehydroge 33.9 5.6E+02 0.012 28.4 12.8 42 121-164 268-311 (520)
472 PLN02514 cinnamyl-alcohol dehy 33.8 2.7E+02 0.0058 29.5 9.8 94 122-227 181-275 (357)
473 cd05279 Zn_ADH1 Liver alcohol 33.7 3E+02 0.0065 29.1 10.2 95 122-227 184-285 (365)
474 COG1379 PHP family phosphoeste 33.7 46 0.00099 36.0 3.8 53 409-469 296-355 (403)
475 PLN02178 cinnamyl-alcohol dehy 33.6 2.5E+02 0.0054 30.2 9.6 92 122-226 179-272 (375)
476 KOG2768 Translation initiation 33.6 1.2E+02 0.0027 30.9 6.6 116 353-473 59-180 (231)
477 PRK11823 DNA repair protein Ra 33.5 24 0.00052 39.4 1.8 11 312-322 6-16 (446)
478 TIGR00686 phnA alkylphosphonat 33.4 27 0.00059 31.8 1.8 13 351-363 21-33 (109)
479 PRK07109 short chain dehydroge 33.4 6E+02 0.013 26.8 14.3 73 125-202 10-93 (334)
480 PF12802 MarR_2: MarR family; 33.0 27 0.00058 27.1 1.6 33 414-446 22-54 (62)
481 COG0489 Mrp ATPases involved i 33.0 64 0.0014 33.5 4.7 34 192-227 163-198 (265)
482 PF09334 tRNA-synt_1g: tRNA sy 32.9 36 0.00077 37.4 3.0 58 350-409 150-224 (391)
483 TIGR02300 FYDLN_acid conserved 32.9 25 0.00055 32.9 1.6 35 309-362 5-39 (129)
484 PRK05993 short chain dehydroge 32.7 5.3E+02 0.011 26.0 12.2 38 124-163 6-45 (277)
485 cd08286 FDH_like_ADH2 formalde 32.7 3.2E+02 0.007 28.2 10.0 96 122-226 167-265 (345)
486 PF13730 HTH_36: Helix-turn-he 32.7 61 0.0013 24.8 3.5 31 412-442 24-54 (55)
487 smart00419 HTH_CRP helix_turn_ 32.5 33 0.00072 25.0 1.9 33 412-444 7-39 (48)
488 PRK05867 short chain dehydroge 32.4 4.9E+02 0.011 25.5 14.1 76 121-202 8-94 (253)
489 PF09862 DUF2089: Protein of u 32.4 1.3E+02 0.0028 27.7 6.0 30 350-381 13-47 (113)
490 PRK10904 DNA adenine methylase 32.3 27 0.00059 36.2 1.9 35 123-162 29-63 (271)
491 PRK06124 gluconate 5-dehydroge 32.3 4.9E+02 0.011 25.5 14.5 76 120-201 9-95 (256)
492 PF01726 LexA_DNA_bind: LexA D 32.3 56 0.0012 26.8 3.4 47 395-444 10-57 (65)
493 PRK05396 tdh L-threonine 3-deh 31.9 3.2E+02 0.007 28.2 9.9 98 121-227 163-263 (341)
494 COG1086 Predicted nucleoside-d 31.7 1.7E+02 0.0037 34.1 8.1 80 119-201 247-332 (588)
495 PRK10336 DNA-binding transcrip 31.7 3.5E+02 0.0076 25.3 9.3 50 148-202 2-52 (219)
496 cd08236 sugar_DH NAD(P)-depend 31.7 4.4E+02 0.0095 27.1 10.8 96 122-226 160-257 (343)
497 PRK04023 DNA polymerase II lar 31.7 48 0.001 40.7 3.9 25 229-253 972-996 (1121)
498 KOG1201 Hydroxysteroid 17-beta 31.4 1.1E+02 0.0024 32.7 6.2 49 119-170 35-86 (300)
499 PRK12826 3-ketoacyl-(acyl-carr 31.4 2E+02 0.0043 27.9 7.8 75 122-202 6-91 (251)
500 PRK13849 putative crown gall t 30.9 1.5E+02 0.0033 30.0 7.0 78 134-216 21-105 (231)
No 1
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.9e-141 Score=1124.34 Aligned_cols=503 Identities=53% Similarity=0.883 Sum_probs=455.9
Q ss_pred CCCCCceEEEeeeEEEEecCCCCccccccchhhhhHHHHHHHHHHHHhHHHHHHhhhhccCCCCCCCccCCCCCCCCccc
Q 047386 2 EDLNDYTIIKEGEAEILMHAKNEVFYNKTQVNNRDISIAVMRAFISKRNQEHEAMLSKRTTSAPKASEKDGEEEAPDESV 81 (581)
Q Consensus 2 ~~~~~~~~i~EG~a~I~~p~~~~VFYNPvq~fNRDlSV~vi~~f~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~ 81 (581)
.+.+++.+|+||.|.|.+++.++|||||+|+|||||||.+|++|.+.|.+++.++...+.. .++.+| .
T Consensus 16 ~d~e~~~~v~Eg~a~i~~~~~~~vFynp~Q~FNRdlSi~vir~~~~~~~~~~~~~~~~~~~------~~~~se------~ 83 (525)
T KOG1253|consen 16 LDLEAFATVTEGQAEILKNKKNCVFYNPKQKFNRDLSITVVRAFSNLRFKEGVAKTFSKKI------LKRGSE------T 83 (525)
T ss_pred cccccceeeecCccccccCCCCceecCHHHHhchhhHHHHHHHHHHHHHHhhhhhhhhHHH------HHhhhc------c
Confidence 4788999999999999999999999999999999999999999999988776543111100 000000 0
Q ss_pred cccCCCCCcCCcccccCCCCccccccccCccchhcccCCCCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHH
Q 047386 82 VNENSNGEIERPAEISQDEPCCISEEAVKPTERNVLRQLKPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEA 161 (581)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~ 161 (581)
..++ -+.+....+.+. +.....++.++.+|||+|||||+||||||+|++|+..|++||.|+.||++
T Consensus 84 ~~e~-----~~~~~~~~~~~~---------t~~~~~~~~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~ 149 (525)
T KOG1253|consen 84 GKES-----LKETDSYNDSPK---------TAALLKREEKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTS 149 (525)
T ss_pred cccc-----cccccccCCCcc---------ccchhhhccCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHH
Confidence 0000 000001111111 12223345567899999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCcEEEEehhHHHHHhhCC---CcccEEeeCCCCCChHhHHHHHHhccCCCeEEEEeccchhhcCCCc
Q 047386 162 CRRNIKFNGSVACSKVESHLADARVYMLTHP---KEFDVVDLDPYGSPSVFLDSAIQSVADGGMLMCTATDMAVLCGGNG 238 (581)
Q Consensus 162 i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~---~~fDvIdLDPyGs~~~fld~A~~~l~~gGlL~vTaTD~a~Lcg~~~ 238 (581)
|++|+++|+++ +.++++++||+.+|+++. ++||||||||||++++|||+|+|+|++||||||||||+++|||+.|
T Consensus 150 i~~Nv~~N~v~--~ive~~~~DA~~lM~~~~~~~~~FDvIDLDPyGs~s~FLDsAvqav~~gGLL~vT~TD~aVL~gn~p 227 (525)
T KOG1253|consen 150 IQRNVELNGVE--DIVEPHHSDANVLMYEHPMVAKFFDVIDLDPYGSPSPFLDSAVQAVRDGGLLCVTCTDMAVLAGNAP 227 (525)
T ss_pred HHhhhhhcCch--hhcccccchHHHHHHhccccccccceEecCCCCCccHHHHHHHHHhhcCCEEEEEecchHhhccCCh
Confidence 99999999987 789999999999999987 8999999999999999999999999999999999999999999999
Q ss_pred chhhhhccCccCCCccchhhhHHHHHHHHHHHHHHcCCceEEEeecccCceEEEEEEEEcChhhhccccccceEEEEcCC
Q 047386 239 EVCYSKYGSYPLRGKYCHEMALRILLACIESHANRYKRYIEPVLSVQMDFYVRVFVRIYTSASAMKSTPLKLSYVYQCIG 318 (581)
Q Consensus 239 ~~c~rkYG~~~~k~~~~hE~~lRill~~i~~~Aa~~~r~i~Plls~s~dhY~RvfVrV~~~~~~~k~~~~k~g~v~~C~~ 318 (581)
++||++||+++++++|||||||||||+.|+++|++|+|+|+||||+++|||+||||||++|+.++|++.++++|||||.+
T Consensus 228 e~C~~kYG~~~lr~~~chE~aLRill~~i~~~Aary~r~IePLlSis~DFYVRVFVRV~t~~~~~k~~~~k~~~v~hC~g 307 (525)
T KOG1253|consen 228 EKCYSKYGASILRMKYCHEMALRILLAAIARAAARYGRYVEPLLSLSIDFYVRVFVRVYTGPPKVKNTRSKYGLVYHCSG 307 (525)
T ss_pred hhHHHhcCcccccchhhhHHHHHHHHHHHHHHHHHhCCcceeeEEEEeeeEEEEEEEEEccCchhhccccceeEEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEeeccccccCCCCcccccCCCCCCCCCcCCCCCCcccccccccccCCCCHHHHHHHHHHhhhcccC-CCcHHHHH
Q 047386 319 CDSFHLQPVGRTASNKNNSVRYLPGFGPVVPQLCSDCGKKFNMGGPIWSGRIHDQEWVNSILGEVKSMKDR-YPAYDRIS 397 (581)
Q Consensus 319 C~~~~~q~lgr~~~~~~~~~~~~~~~~~~~~~~C~~Cg~~~~~~GPlW~GpLhd~~fv~~ml~~~~~~~~~-~~t~~ri~ 397 (581)
||+||+||+||.. .+++..+|.++.||++++.|.|||++++++||||+|||||.+||++||..++++++. ++|.+||.
T Consensus 308 C~s~~~q~lg~~~-~~~~~~~~~~~~gp~v~~~C~hcg~~~~l~GP~W~~PlHd~~fv~~mL~~~k~~~~~~~~t~kri~ 386 (525)
T KOG1253|consen 308 CGSFHLQPLGRTS-PNPGSTKFSEAGGPPVPCNCEHCGKRLHLGGPMWSGPLHDAEFVTEMLEIAKEVSEDTYGTDKRLS 386 (525)
T ss_pred cchhhcccccccC-CCCccceeccCCCCCCCcccccccccccccCccccCccccHHHHHHHHHHhhcCCccccchhhhhe
Confidence 9999999999998 477889999999999999999999999999999999999999999999999886544 55999999
Q ss_pred HHHHHHHhhCCCCCceeeHHHHhhhcCCCCCCHHHHHHHHHHCCceEEecccCCCccccCCCHHHHHHHHHHHHHhCCCC
Q 047386 398 AVLTTISEELPDVPLFLSLHNLCSTLKCTSPSAVMFRSAVINAGYRVSGTHVNPLGLKTDAPMGVIWDIMRCWVKNHPVK 477 (581)
Q Consensus 398 ~lL~~~~eEl~~~P~yy~l~~l~~~lk~~~P~~~~~~~aL~~~GY~aSrTH~~p~~iKTdAP~~~i~di~r~w~~~~p~k 477 (581)
+||+++.|||+|+||||++++||+.+|+++|+++.|++||.++||+||+||+.|+||||||||+.||||||+|++.||+|
T Consensus 387 g~L~~~~eeL~dvp~y~~~~~l~s~lk~~~p~~~~~~sAllnaGyrvS~sH~~~naiKTnAP~s~iwdi~r~~~k~h~vk 466 (525)
T KOG1253|consen 387 GMLELVDEELPDVPLYYSLNQLCSVLKCNSPPLKKFRSALLNAGYRVSGSHANPNAIKTNAPMSHIWDILRCWIKDHPVK 466 (525)
T ss_pred ehhhcccccccCCccccchhhhhhhhcccCCcHHHHHHHHHhccceeccccccccccccCCCHHHHHHHHHHhhccCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC--CCCCccccccccCccccccccchhccchHHhhcCccccCCCCCCCCCCCCCCCC
Q 047386 478 AQ--LPDQPGSVILAKEPTLQANFARAVASLSKAQAKKVARFLPNPEKHWGPKPRAGR 533 (581)
Q Consensus 478 ~~--~~~~p~~~il~~~~~~~~~f~~~~~~~~~~~~~~~~r~~~NP~~nWGPk~ra~~ 533 (581)
.+ ++.+|+.+||+++|+.+++|+.++++.+++|+++++|||+|||+||||+.||++
T Consensus 467 ~e~m~~~s~~~~iLs~ep~~~~~F~~~~~~~p~~~~~~~~rfq~nPt~~wGp~~ra~~ 524 (525)
T KOG1253|consen 467 LENMSKTSPGSAILSKEPTSQVDFTLHPGANPKSRKKKIVRFQENPTKNWGPKERAGQ 524 (525)
T ss_pred HhhcCCCCCceEEEecCCcceeeeeecCCCChhhhhhhhhhhccCCCCCCCCCCCCCC
Confidence 87 799999999999999999999999999999999999999999999999999975
No 2
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.3e-111 Score=873.00 Aligned_cols=371 Identities=38% Similarity=0.667 Sum_probs=344.0
Q ss_pred CceEEEeeeEEEEecCC-------CCccccccchhhhhHHHHHHHHHHHHhHHHHHHhhhhccCCCCCCCccCCCCCCCC
Q 047386 6 DYTIIKEGEAEILMHAK-------NEVFYNKTQVNNRDISIAVMRAFISKRNQEHEAMLSKRTTSAPKASEKDGEEEAPD 78 (581)
Q Consensus 6 ~~~~i~EG~a~I~~p~~-------~~VFYNPvq~fNRDlSV~vi~~f~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~ 78 (581)
..++++||.++|++|+. ++|||||.|+|||||||++|++|.+.+
T Consensus 2 ~~~~v~EG~~~i~vP~~~~~~~~~~pVFYNP~m~~NRDlsV~~l~~~~~~~----------------------------- 52 (380)
T COG1867 2 ELMEVKEGSAKIYVPDPYKGGSKRAPVFYNPAMEFNRDLSVLVLKAFGKLL----------------------------- 52 (380)
T ss_pred ceEEeecCceEEEcCCCCCCCCCCCcceeCchhhhccchhHHHHHHhhccC-----------------------------
Confidence 35789999999999873 579999999999999999999985421
Q ss_pred ccccccCCCCCcCCcccccCCCCccccccccCccchhcccCCCCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHH
Q 047386 79 ESVVNENSNGEIERPAEISQDEPCCISEEAVKPTERNVLRQLKPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKAS 158 (581)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~A 158 (581)
+.+|||+|||||+||||||.|++.+ +|++||+||.|
T Consensus 53 -------------------------------------------~~~v~DalsatGiRgIRya~E~~~~-~v~lNDisp~A 88 (380)
T COG1867 53 -------------------------------------------PKRVLDALSATGIRGIRYAVETGVV-KVVLNDISPKA 88 (380)
T ss_pred -------------------------------------------CeEEeecccccchhHhhhhhhcCcc-EEEEccCCHHH
Confidence 3479999999999999999998655 89999999999
Q ss_pred HHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEeeCCCCCChHhHHHHHHhccCCCeEEEEeccchhhcCCCc
Q 047386 159 VEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDLDPYGSPSVFLDSAIQSVADGGMLMCTATDMAVLCGGNG 238 (581)
Q Consensus 159 ve~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdLDPyGs~~~fld~A~~~l~~gGlL~vTaTD~a~Lcg~~~ 238 (581)
+++|++|+++|... +..++++||+.+|+++...||+|||||||||+||+|+|++++++||+|+|||||+++|||++|
T Consensus 89 velik~Nv~~N~~~---~~~v~n~DAN~lm~~~~~~fd~IDiDPFGSPaPFlDaA~~s~~~~G~l~vTATD~a~L~G~~p 165 (380)
T COG1867 89 VELIKENVRLNSGE---DAEVINKDANALLHELHRAFDVIDIDPFGSPAPFLDAALRSVRRGGLLCVTATDTAPLCGSYP 165 (380)
T ss_pred HHHHHHHHHhcCcc---cceeecchHHHHHHhcCCCccEEecCCCCCCchHHHHHHHHhhcCCEEEEEecccccccCCCh
Confidence 99999999999543 456777999999998778999999999999999999999999999999999999999999999
Q ss_pred chhhhhccCccCCCccchhhhHHHHHHHHHHHHHHcCCceEEEeecccCceEEEEEEEEcChhhhccccccceEEEEcCC
Q 047386 239 EVCYSKYGSYPLRGKYCHEMALRILLACIESHANRYKRYIEPVLSVQMDFYVRVFVRIYTSASAMKSTPLKLSYVYQCIG 318 (581)
Q Consensus 239 ~~c~rkYG~~~~k~~~~hE~~lRill~~i~~~Aa~~~r~i~Plls~s~dhY~RvfVrV~~~~~~~k~~~~k~g~v~~C~~ 318 (581)
++|+||||+.|++++|+||+|||+||+.|+|.||+|+++|+||||+++|||+||||+|.+|+.+++++++++||+|||..
T Consensus 166 ~~c~rkY~a~~~~~~~~hE~glR~Lig~vaR~AAkyd~~i~Plls~~~dhY~Rvfv~v~rga~~ad~~~e~~g~~~~c~~ 245 (380)
T COG1867 166 RKCRRKYGAVPLKTEFCHEVGLRILIGYVARTAAKYDKAIEPLLSLSIDHYVRVFVEVRRGARRADKLLENLGYIYHCSR 245 (380)
T ss_pred HHHHHHhccccCCCcchhHHHHHHHHHHHHHHHHhhcccceeEEEeeeceEEEEEEEEccCchhHHHHHHhcCcEEEccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEeeccccccCCCCcccccCCCCCCCCCcCCCCCCcccccccccccCCCCHHHHHHHHHHhhhcccCCCcHHHHHH
Q 047386 319 CDSFHLQPVGRTASNKNNSVRYLPGFGPVVPQLCSDCGKKFNMGGPIWSGRIHDQEWVNSILGEVKSMKDRYPAYDRISA 398 (581)
Q Consensus 319 C~~~~~q~lgr~~~~~~~~~~~~~~~~~~~~~~C~~Cg~~~~~~GPlW~GpLhd~~fv~~ml~~~~~~~~~~~t~~ri~~ 398 (581)
||. . ....+.+..+||+||+.++++||+|+|||||++|+++|++.++.. .++|.+|+.+
T Consensus 246 cg~-~------------------~~~~~~~~~~c~~Cg~~~~~~GPlW~GpL~d~~f~e~~l~~~~~~--~l~~~~~~~k 304 (380)
T COG1867 246 CGE-I------------------VGSFREVDEKCPHCGGKVHLAGPLWLGPLHDEEFIEEMLEIAEGL--ELGTKKRALK 304 (380)
T ss_pred ccc-e------------------ecccccccccCCcccccceeccCcccCcccCHHHHHHHHHHhhcc--ccccHHHHHH
Confidence 981 1 011234567899999999999999999999999999999988765 5899999999
Q ss_pred HHHHHHhhCCCCCceeeHHHHhhhcCCCCCCHHHHHHHHHHCCceEEecccCCCccccCCCHHHHHHHHHHHHHh
Q 047386 399 VLTTISEELPDVPLFLSLHNLCSTLKCTSPSAVMFRSAVINAGYRVSGTHVNPLGLKTDAPMGVIWDIMRCWVKN 473 (581)
Q Consensus 399 lL~~~~eEl~~~P~yy~l~~l~~~lk~~~P~~~~~~~aL~~~GY~aSrTH~~p~~iKTdAP~~~i~di~r~w~~~ 473 (581)
||++|.+|++..|+||++|+||+.+|.+.||+..++++|+++||+||||||+|+|||||||+++||++|+.|.+.
T Consensus 305 lL~~i~~E~~~~p~fydl~~ias~l~~s~p~~~~vv~~L~~~G~~asrTHf~p~giKTda~~~ev~~vl~~~~~~ 379 (380)
T COG1867 305 LLKLIKKELDISPLFYDLHRIASKLGLSAPPLEEVVEALRSAGYEASRTHFSPTGIKTDAPYEEVEKVLKSLKKD 379 (380)
T ss_pred HHHHHHhhcCCCceEEEHHHHHHHhCCCCCCHHHHHHHHHhcCceeeeeccCCcccccCCCHHHHHHHHHHhhcC
Confidence 999999999766999999999999999999999999999999999999999999999999999999999999753
No 3
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=100.00 E-value=2.2e-110 Score=888.53 Aligned_cols=373 Identities=46% Similarity=0.796 Sum_probs=302.3
Q ss_pred EEeeeEEEEecCCCCccccccchhhhhHHHHHHHHHHHHhHHHHHHhhhhccCCCCCCCccCCCCCCCCccccccCCCCC
Q 047386 10 IKEGEAEILMHAKNEVFYNKTQVNNRDISIAVMRAFISKRNQEHEAMLSKRTTSAPKASEKDGEEEAPDESVVNENSNGE 89 (581)
Q Consensus 10 i~EG~a~I~~p~~~~VFYNPvq~fNRDlSV~vi~~f~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (581)
|+++++.+.+|+.++|||||+|+|||||||++|+ |.+.+.++.
T Consensus 5 i~v~~~~~~~~~~~~vFYNP~~~~nRDlsvl~~~-~~~~~~~~~------------------------------------ 47 (377)
T PF02005_consen 5 IKVPEANITIPKKAPVFYNPVMEFNRDLSVLAIR-YLAVLKEKR------------------------------------ 47 (377)
T ss_dssp EEEE---SSTTTTSSSS--GGGHHHHHHHHHH----HHHHHHCH------------------------------------
T ss_pred EEeCCceeecCCCCCcccCcchhcccceeehhHH-HHHHhhhhh------------------------------------
Confidence 3333333334456899999999999999999998 655442210
Q ss_pred cCCcccccCCCCccccccccCccchhcccCCCCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHh
Q 047386 90 IERPAEISQDEPCCISEEAVKPTERNVLRQLKPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFN 169 (581)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N 169 (581)
..+.+|||+|||||+|||||++|++|+.+|++||+|+.|+++|++|+++|
T Consensus 48 ------------------------------~~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N 97 (377)
T PF02005_consen 48 ------------------------------KGPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELN 97 (377)
T ss_dssp -------------------------------S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHC
T ss_pred ------------------------------cCCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhc
Confidence 01358999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcEEEEehhHHHHHhhCCCcccEEeeCCCCCChHhHHHHHHhccCCCeEEEEeccchhhcCCCcchhhhhccCcc
Q 047386 170 GSVACSKVESHLADARVYMLTHPKEFDVVDLDPYGSPSVFLDSAIQSVADGGMLMCTATDMAVLCGGNGEVCYSKYGSYP 249 (581)
Q Consensus 170 ~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdLDPyGs~~~fld~A~~~l~~gGlL~vTaTD~a~Lcg~~~~~c~rkYG~~~ 249 (581)
+++. +++++.++||+.+|+.+..+||+|||||||||+||||+|++++++||+|+|||||+++|||+++++|+|+||++|
T Consensus 98 ~~~~-~~~~v~~~DAn~ll~~~~~~fD~IDlDPfGSp~pfldsA~~~v~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~~~ 176 (377)
T PF02005_consen 98 GLED-ERIEVSNMDANVLLYSRQERFDVIDLDPFGSPAPFLDSALQAVKDGGLLCVTATDTAVLCGSYPEKCFRKYGAVP 176 (377)
T ss_dssp T-SG-CCEEEEES-HHHHHCHSTT-EEEEEE--SS--HHHHHHHHHHEEEEEEEEEEE--HHHHTTSSHHHHHHHHSSB-
T ss_pred cccC-ceEEEehhhHHHHhhhccccCCEEEeCCCCCccHhHHHHHHHhhcCCEEEEeccccccccCCChhHHHHhcCCcc
Confidence 9973 379999999999997667899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccchhhhHHHHHHHHHHHHHHcCCceEEEeecccCceEEEEEEEEcChhhhccccccceEEEEcCCCCceeEeeccc
Q 047386 250 LRGKYCHEMALRILLACIESHANRYKRYIEPVLSVQMDFYVRVFVRIYTSASAMKSTPLKLSYVYQCIGCDSFHLQPVGR 329 (581)
Q Consensus 250 ~k~~~~hE~~lRill~~i~~~Aa~~~r~i~Plls~s~dhY~RvfVrV~~~~~~~k~~~~k~g~v~~C~~C~~~~~q~lgr 329 (581)
++++|+||+|||+||+.|+|+||+|+++|+||||++.|||+||||||.+|+.+++++++++||++||++|+++...
T Consensus 177 ~~~~~~~E~glRill~~i~r~Aa~~~~~i~PllS~~~~hy~Rv~v~v~~~~~~a~~~~~~~G~v~~C~~C~~~~~~---- 252 (377)
T PF02005_consen 177 RKTPYCHEMGLRILLGAIAREAARYDRGIEPLLSFSIDHYVRVFVRVKRGASRADESLEKLGYVYYCPSCGYREEV---- 252 (377)
T ss_dssp --STTHHHHHHHHHHHHHHHHHHTTTEEEEEEEEEEETTEEEEEEEEEESHHHHHHHHTTEEEEEEETTT--EECC----
T ss_pred cCCCcccHHHHHHHHHHHHHHHHHhCCCeEEEEEeEeCcEEEEEEEEecCHHHHHHHHHheeEEEECCCccccccc----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999753211
Q ss_pred cccCCCCcccccCCCCCCCCCcCCCCCCcccccccccccCCCCHHHHHHHHHHhhhcccCCCcHHHHHHHHHHHHhhCCC
Q 047386 330 TASNKNNSVRYLPGFGPVVPQLCSDCGKKFNMGGPIWSGRIHDQEWVNSILGEVKSMKDRYPAYDRISAVLTTISEELPD 409 (581)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~C~~Cg~~~~~~GPlW~GpLhd~~fv~~ml~~~~~~~~~~~t~~ri~~lL~~~~eEl~~ 409 (581)
. +.. .....|++||++++++||||+|||||.+||++|++.+++.. .+.+.+|+.+||+++.+|+.+
T Consensus 253 -----~-------~~~-~~~~~c~~cg~~~~~~GPlWlGpL~d~~fl~~ml~~~~~~~-~~~~~~ri~~lL~~i~eE~~~ 318 (377)
T PF02005_consen 253 -----K-------GLQ-KLKSKCPECGSKLHISGPLWLGPLHDKEFLEKMLEEAEEMP-ELNTSKRIEKLLETIKEELID 318 (377)
T ss_dssp -----T--------GC-C--CEETTT-SCCCEEEEEE-S-SB-HHHHHHHHHHHCT-S--TTTHHHHHHHHHHHHHCHS-
T ss_pred -----c-------Ccc-ccCCcCCCCCCccceecCccccccCCHHHHHHHHhhhhccc-hhhhHHHHhhhcchhhhhccc
Confidence 0 000 11267999999999999999999999999999999998754 345689999999999999668
Q ss_pred CCceeeHHHHhhhcCCCCCCHHHHHHHHHHCCceEEecccCCCccccCCCHHHHHHHHH
Q 047386 410 VPLFLSLHNLCSTLKCTSPSAVMFRSAVINAGYRVSGTHVNPLGLKTDAPMGVIWDIMR 468 (581)
Q Consensus 410 ~P~yy~l~~l~~~lk~~~P~~~~~~~aL~~~GY~aSrTH~~p~~iKTdAP~~~i~di~r 468 (581)
+|+||++|+||+.+|+++|+++.|+++|+++||+||+|||+|+|||||||+++||||||
T Consensus 319 ~P~yY~l~~ias~lk~~~P~~~~ii~aL~~~Gy~aSrTH~~p~giKTdAP~~~i~dilR 377 (377)
T PF02005_consen 319 PPFYYDLHEIASRLKCNPPPLDKIISALRNAGYRASRTHFDPNGIKTDAPIEEIWDILR 377 (377)
T ss_dssp SSS-EEHHHHHHHHT-SC--HHHHHHHHHHTTTTEEEETTCCCEEEESS-HHHHHHHH-
T ss_pred ceeEEeHHHHHHhcCCCCCCHHHHHHHHhhcceEEEecccCCCcEecCCCHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999998
No 4
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=100.00 E-value=2.9e-108 Score=871.52 Aligned_cols=372 Identities=36% Similarity=0.665 Sum_probs=344.4
Q ss_pred EEeeeEEEEecCCCCccccccchhhhhHHHHHHHHHHHHhHHHHHHhhhhccCCCCCCCccCCCCCCCCccccccCCCCC
Q 047386 10 IKEGEAEILMHAKNEVFYNKTQVNNRDISIAVMRAFISKRNQEHEAMLSKRTTSAPKASEKDGEEEAPDESVVNENSNGE 89 (581)
Q Consensus 10 i~EG~a~I~~p~~~~VFYNPvq~fNRDlSV~vi~~f~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (581)
|+||+|+|++|+.++|||||+|+|||||||+++++|.+.+..
T Consensus 1 i~EG~~~i~~p~~~~vFYNP~~~~nRDlsv~~~~~~~~~~~~-------------------------------------- 42 (374)
T TIGR00308 1 VKEGKAEILVPKKETVFYNPRMQFNRDLSVTCIQAFDNLYGK-------------------------------------- 42 (374)
T ss_pred CccceEEEEecCCCCcccCchhhccccHHHHHHHHHHHhhCC--------------------------------------
Confidence 689999999998889999999999999999999999653210
Q ss_pred cCCcccccCCCCccccccccCccchhcccCCCCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHh
Q 047386 90 IERPAEISQDEPCCISEEAVKPTERNVLRQLKPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFN 169 (581)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N 169 (581)
..+.+|||+|||||+|||||++|++|+++|++||+|+.|+++|++|+++|
T Consensus 43 ------------------------------~~~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N 92 (374)
T TIGR00308 43 ------------------------------ECYINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYN 92 (374)
T ss_pred ------------------------------cCCCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHh
Confidence 01358999999999999999999778999999999999999999999999
Q ss_pred CCCCCCcEEEEehhHHHHHhhCCCcccEEeeCCCCCChHhHHHHHHhccCCCeEEEEeccchhhcCCCcchhhhhccCcc
Q 047386 170 GSVACSKVESHLADARVYMLTHPKEFDVVDLDPYGSPSVFLDSAIQSVADGGMLMCTATDMAVLCGGNGEVCYSKYGSYP 249 (581)
Q Consensus 170 ~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdLDPyGs~~~fld~A~~~l~~gGlL~vTaTD~a~Lcg~~~~~c~rkYG~~~ 249 (581)
++. +++++++||+.+|.....+||+||+||||+|++|+++|++++++||+|+|||||+++|||+++++|+|+||++|
T Consensus 93 ~~~---~~~v~~~Da~~~l~~~~~~fDvIdlDPfGs~~~fld~al~~~~~~glL~vTaTD~~~L~G~~~~~~~rkYga~~ 169 (374)
T TIGR00308 93 SVE---NIEVPNEDAANVLRYRNRKFHVIDIDPFGTPAPFVDSAIQASAERGLLLVTATDTSALCGNYPKSCLRKYGANP 169 (374)
T ss_pred CCC---cEEEEchhHHHHHHHhCCCCCEEEeCCCCCcHHHHHHHHHhcccCCEEEEEecccHHhcCCChHHHHHHhCCcc
Confidence 984 68999999999998655689999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccchhhhHHHHHHHHHHHHHHcCCceEEEeecccCceEEEEEEEEcChhhhccccccceEEEEcCCCCceeEeeccc
Q 047386 250 LRGKYCHEMALRILLACIESHANRYKRYIEPVLSVQMDFYVRVFVRIYTSASAMKSTPLKLSYVYQCIGCDSFHLQPVGR 329 (581)
Q Consensus 250 ~k~~~~hE~~lRill~~i~~~Aa~~~r~i~Plls~s~dhY~RvfVrV~~~~~~~k~~~~k~g~v~~C~~C~~~~~q~lgr 329 (581)
++++|+||+|||+||+.|+++|++|+++|+||||+++|||+||||||.+|+.+++++++++||++||++|+.+ |+++.
T Consensus 170 ~~~~~~~E~glRiLlg~i~r~Aa~~~~~i~Pl~S~~~~~y~Rv~vrv~~~~~~~~~~~~~~g~v~~C~~c~~~--~~~~~ 247 (374)
T TIGR00308 170 VKTESCHESALRLLLGFVKRTAAKYEKALEPLLSHSIDHYVRVYVKVKRSAIRADKVMESTGYTYHCSRCLHN--KPVNG 247 (374)
T ss_pred cCCcchHHHHHHHHHHHHHHHHHHcCCceEEEEEeeeCcEEEEEEEEecCHHHHHHHHHhceeEEECCCcccc--ccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999643 33332
Q ss_pred cccCCCCcccccCCCCCCCCCcCCCCCCcccccccccccCCCCHHHHHHHHHHhhhcccCCCcHHHHHHHHHHHHhhCCC
Q 047386 330 TASNKNNSVRYLPGFGPVVPQLCSDCGKKFNMGGPIWSGRIHDQEWVNSILGEVKSMKDRYPAYDRISAVLTTISEELPD 409 (581)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~C~~Cg~~~~~~GPlW~GpLhd~~fv~~ml~~~~~~~~~~~t~~ri~~lL~~~~eEl~~ 409 (581)
.. .....|++||++++++||||+|||||++||++|++.++.. .+++.+|+.+||+++.+|+++
T Consensus 248 ~~---------------~~~~~C~~c~~~~~~~GPlW~G~l~d~~fl~~m~~~~~~~--~~~~~~~~~~lL~~~~~E~~~ 310 (374)
T TIGR00308 248 IS---------------QRKGRCKECGGEYHLAGPLYAGPLHDKEFIEEVLRIAEEK--EYGTRKRVLKMLSLIKNELSD 310 (374)
T ss_pred cc---------------CCCCCCCCCCCcceeecCcccCccCCHHHHHHHHHhhhhc--cccchHHHHHHHHHHHhccCC
Confidence 11 1124699999999999999999999999999999988754 477889999999999999977
Q ss_pred CCceeeHHHHhhhcCCCCCCHHHHHHHHHHCCceEEecccCCCccccCCCHHHHHHHHHHHH
Q 047386 410 VPLFLSLHNLCSTLKCTSPSAVMFRSAVINAGYRVSGTHVNPLGLKTDAPMGVIWDIMRCWV 471 (581)
Q Consensus 410 ~P~yy~l~~l~~~lk~~~P~~~~~~~aL~~~GY~aSrTH~~p~~iKTdAP~~~i~di~r~w~ 471 (581)
+||||++|+||+++|+++|+++.|+++|+++||+||+|||+|+|||||||+++||||||.|.
T Consensus 311 ~p~~y~~~~i~~~~k~~~p~~~~~~~~L~~~Gy~as~tH~~p~~iKTdAp~~~i~~i~~~~~ 372 (374)
T TIGR00308 311 PPGYYSPHHIASVLKLSVPPLKDVVAGLKSLGFEASRTHYQPSGIKTDAPWDAIWEVLQKCD 372 (374)
T ss_pred CCeEEeHHHHHHhcCCCCCCHHHHHHHHHHCCCeEEeeeeCCCcEecCCCHHHHHHHHHhcc
Confidence 88999999999999999999999999999999999999999999999999999999999995
No 5
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=100.00 E-value=9.7e-98 Score=793.82 Aligned_cols=366 Identities=40% Similarity=0.669 Sum_probs=340.1
Q ss_pred ceEEEeeeEEEEecCC-------------CCccccccchhhhhHHHHHHHHHHHHhHHHHHHhhhhccCCCCCCCccCCC
Q 047386 7 YTIIKEGEAEILMHAK-------------NEVFYNKTQVNNRDISIAVMRAFISKRNQEHEAMLSKRTTSAPKASEKDGE 73 (581)
Q Consensus 7 ~~~i~EG~a~I~~p~~-------------~~VFYNPvq~fNRDlSV~vi~~f~~~~~~~~~~~~~k~~~~~~~~~~~~~~ 73 (581)
+++|+||+|+|++|+. ++|||||.|++||||++++++++...+
T Consensus 1 ~~~i~EG~~~i~~p~~~~~~~~~~~~~~~~~vFyqp~~~~nrdl~~~v~~~~~~~~------------------------ 56 (382)
T PRK04338 1 LMIITEGKVKIEVPDPSTYSKDGKFPPSWAPVFYNPRMELNRDISVLVLRAFGPKL------------------------ 56 (382)
T ss_pred CeEEEeccEEEEecCccccccccccCCCCCCeeeCccccchhhHHHHHHHHHHhhc------------------------
Confidence 4789999999999974 579999999999999999998763210
Q ss_pred CCCCCccccccCCCCCcCCcccccCCCCccccccccCccchhcccCCCCCeEEEecCcccHHHHHHhhhcCCccEEEEEe
Q 047386 74 EEAPDESVVNENSNGEIERPAEISQDEPCCISEEAVKPTERNVLRQLKPPRVLEALSASGLRALRYAREVEGIGQVVALD 153 (581)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD 153 (581)
.+.+|||+|||||+|||+|+++. ++.+|++||
T Consensus 57 -----------------------------------------------~~~~vLDl~aGsG~~~l~~a~~~-~~~~V~a~D 88 (382)
T PRK04338 57 -----------------------------------------------PRESVLDALSASGIRGIRYALET-GVEKVTLND 88 (382)
T ss_pred -----------------------------------------------CCCEEEECCCcccHHHHHHHHHC-CCCEEEEEe
Confidence 02379999999999999999985 578999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEeeCCCCCChHhHHHHHHhccCCCeEEEEeccchhh
Q 047386 154 NDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDLDPYGSPSVFLDSAIQSVADGGMLMCTATDMAVL 233 (581)
Q Consensus 154 ~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdLDPyGs~~~fld~A~~~l~~gGlL~vTaTD~a~L 233 (581)
+|+.|++++++|+++|+++ .++++++||+.+|.. ..+||+||+||||++.+|++.|++.+++||+|+||+||+++|
T Consensus 89 in~~Av~~a~~N~~~N~~~---~~~v~~~Da~~~l~~-~~~fD~V~lDP~Gs~~~~l~~al~~~~~~gilyvSAtD~~~L 164 (382)
T PRK04338 89 INPDAVELIKKNLELNGLE---NEKVFNKDANALLHE-ERKFDVVDIDPFGSPAPFLDSAIRSVKRGGLLCVTATDTAPL 164 (382)
T ss_pred CCHHHHHHHHHHHHHhCCC---ceEEEhhhHHHHHhh-cCCCCEEEECCCCCcHHHHHHHHHHhcCCCEEEEEecCchhh
Confidence 9999999999999999985 567999999999864 457999999999999999999999999999999999999999
Q ss_pred cCCCcchhhhhccCccCCCccchhhhHHHHHHHHHHHHHHcCCceEEEeecccCceEEEEEEEEcChhhhccccccceEE
Q 047386 234 CGGNGEVCYSKYGSYPLRGKYCHEMALRILLACIESHANRYKRYIEPVLSVQMDFYVRVFVRIYTSASAMKSTPLKLSYV 313 (581)
Q Consensus 234 cg~~~~~c~rkYG~~~~k~~~~hE~~lRill~~i~~~Aa~~~r~i~Plls~s~dhY~RvfVrV~~~~~~~k~~~~k~g~v 313 (581)
||+++.+|+++||.+|.+++|+||+|||+||+.|+|+|++|+++|+||||++.|||+||||||.+|+.+++++++++||+
T Consensus 165 ~g~y~~~~~~~yd~fP~~~~~~~E~glRill~~i~r~Aa~~~~~i~Pl~s~~~~~y~Rv~vrv~~~~~~~~~~~~~~g~~ 244 (382)
T PRK04338 165 CGAYPKSCLRKYGAVPLKTEFYHEMGLRILIGYIAREAAKYDKGLEPLFSHSTDHYYRVFLKVERGAKKADKALENLGYV 244 (382)
T ss_pred cCCChHHHHHHhcCcccCCcchhHHHHHHHHHHHHHHHHHcCCCeEEEEEeeeccEEEEEEEEecCHHHHHHHHHhceeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCceeEeeccccccCCCCcccccCCCCCCCCCcCCCCCCcccccccccccCCCCHHHHHHHHHHhhhcccCCCcH
Q 047386 314 YQCIGCDSFHLQPVGRTASNKNNSVRYLPGFGPVVPQLCSDCGKKFNMGGPIWSGRIHDQEWVNSILGEVKSMKDRYPAY 393 (581)
Q Consensus 314 ~~C~~C~~~~~q~lgr~~~~~~~~~~~~~~~~~~~~~~C~~Cg~~~~~~GPlW~GpLhd~~fv~~ml~~~~~~~~~~~t~ 393 (581)
+||++|++++.++. ..+..|++||++++++||||+|||||++||++|++.++ ..+++.
T Consensus 245 ~~C~~c~~~~~~~~-------------------~~~~~C~~c~~~~~~~GPlW~G~l~d~~fl~~~~~~~~---~~~~~~ 302 (382)
T PRK04338 245 YYCPKCLYREEVEG-------------------LPPEECPVCGGKFGTAGPLWLGPLHDKEFVEEMLEEAA---KELGTS 302 (382)
T ss_pred EECCCCCcEEEecC-------------------CCCCCCCCCCCcceeccccccCccCCHHHHHHHHHHhh---hhccch
Confidence 99999999988743 13357999999999999999999999999999999885 346788
Q ss_pred HHHHHHHHHHHhh--CCCCCceeeHHHHhhhcCCCCCCHHHHHHHHHHCCceEEecccCCCccccCCCHHHHHHHHHHHH
Q 047386 394 DRISAVLTTISEE--LPDVPLFLSLHNLCSTLKCTSPSAVMFRSAVINAGYRVSGTHVNPLGLKTDAPMGVIWDIMRCWV 471 (581)
Q Consensus 394 ~ri~~lL~~~~eE--l~~~P~yy~l~~l~~~lk~~~P~~~~~~~aL~~~GY~aSrTH~~p~~iKTdAP~~~i~di~r~w~ 471 (581)
+|+.+||+++.+| + ++|+||++|+||+++|+++|+++.|+++|+++||+||||||+|+|||||||+++||||||+|.
T Consensus 303 ~~~~~ll~~~~~E~~~-~~p~~y~~~~i~~~~k~~~p~~~~~~~~L~~~Gy~as~tH~~p~~iKTdAp~~~i~~i~~~~~ 381 (382)
T PRK04338 303 KKALKLLKTIEEESKL-DTPTFYDLHELAKKLKVSAPPMDEILEALREAGFEASRTHFSPTGFKTDAPYDEIKEAIKSLS 381 (382)
T ss_pred HHHHHHHHHHHhccCC-CCCcEEcHHHHHhhcCCCCCCHHHHHHHHHHCCCeEEeeEECCCcEecCCCHHHHHHHHHHhc
Confidence 9999999999999 5 689999999999999999999999999999999999999999999999999999999999994
No 6
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.82 E-value=1.9e-19 Score=192.76 Aligned_cols=140 Identities=24% Similarity=0.313 Sum_probs=122.5
Q ss_pred CCCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhC---CCccc
Q 047386 120 LKPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTH---PKEFD 196 (581)
Q Consensus 120 ~~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~---~~~fD 196 (581)
..|.+|||+||+||++||.+|. .||++||.+|+|..|++.+++|+++||++. .++.++++||+.+|... +++||
T Consensus 216 ~~GkrvLNlFsYTGgfSv~Aa~--gGA~~vt~VD~S~~al~~a~~N~~LNg~~~-~~~~~i~~Dvf~~l~~~~~~g~~fD 292 (393)
T COG1092 216 AAGKRVLNLFSYTGGFSVHAAL--GGASEVTSVDLSKRALEWARENAELNGLDG-DRHRFIVGDVFKWLRKAERRGEKFD 292 (393)
T ss_pred ccCCeEEEecccCcHHHHHHHh--cCCCceEEEeccHHHHHHHHHHHHhcCCCc-cceeeehhhHHHHHHHHHhcCCccc
Confidence 3588999999999999999999 599999999999999999999999999973 67899999999999763 46999
Q ss_pred EEeeCCCCCCh-------------HhHHHHHHhccCCCeEEEEeccchhhcCCCcchhhhhccCccCCCccchhhhHHHH
Q 047386 197 VVDLDPYGSPS-------------VFLDSAIQSVADGGMLMCTATDMAVLCGGNGEVCYSKYGSYPLRGKYCHEMALRIL 263 (581)
Q Consensus 197 vIdLDPyGs~~-------------~fld~A~~~l~~gGlL~vTaTD~a~Lcg~~~~~c~rkYG~~~~k~~~~hE~~lRil 263 (581)
+|+||||.... ..++.|+++|++||+|++.+ |..+ ++...|
T Consensus 293 lIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s------~~~~--------------------~~~~~f 346 (393)
T COG1092 293 LIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSS------CSRH--------------------FSSDLF 346 (393)
T ss_pred EEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEe------cCCc--------------------cCHHHH
Confidence 99999964321 45677899999999999977 6433 888999
Q ss_pred HHHHHHHHHHcCCceEEE--eecccCc
Q 047386 264 LACIESHANRYKRYIEPV--LSVQMDF 288 (581)
Q Consensus 264 l~~i~~~Aa~~~r~i~Pl--ls~s~dh 288 (581)
++.|+++|.+.++.++-+ ..++.||
T Consensus 347 ~~~i~~a~~~~~~~~~~~~~~~~~~D~ 373 (393)
T COG1092 347 LEIIARAAAAAGRRAQEIEGEGQPPDH 373 (393)
T ss_pred HHHHHHHHHhcCCcEEEeeccCCCCCc
Confidence 999999999999999976 7777888
No 7
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.74 E-value=4.7e-18 Score=165.18 Aligned_cols=126 Identities=23% Similarity=0.377 Sum_probs=93.5
Q ss_pred CCCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhC---CCccc
Q 047386 120 LKPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTH---PKEFD 196 (581)
Q Consensus 120 ~~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~---~~~fD 196 (581)
+.+.+|||+|||||.+||++++ |||++|+++|.|+.|+..|++|++..++. ++++++++|+..++... ..+||
T Consensus 41 ~~g~~vLDLFaGSGalGlEALS--RGA~~v~fVE~~~~a~~~i~~N~~~l~~~--~~~~v~~~d~~~~l~~~~~~~~~fD 116 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALS--RGAKSVVFVEKNRKAIKIIKKNLEKLGLE--DKIRVIKGDAFKFLLKLAKKGEKFD 116 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHH--TT-SEEEEEES-HHHHHHHHHHHHHHT-G--GGEEEEESSHHHHHHHHHHCTS-EE
T ss_pred cCCCeEEEcCCccCccHHHHHh--cCCCeEEEEECCHHHHHHHHHHHHHhCCC--cceeeeccCHHHHHHhhcccCCCce
Confidence 5788999999999999999999 69999999999999999999999999986 57999999999888553 57899
Q ss_pred EEeeCC-CCCCh---HhHHHHH--HhccCCCeEEEEe---ccchhhcCCCcchhhhhccCcc
Q 047386 197 VVDLDP-YGSPS---VFLDSAI--QSVADGGMLMCTA---TDMAVLCGGNGEVCYSKYGSYP 249 (581)
Q Consensus 197 vIdLDP-yGs~~---~fld~A~--~~l~~gGlL~vTa---TD~a~Lcg~~~~~c~rkYG~~~ 249 (581)
+|++|| |.... ..++... .+|+++|+|++++ .+.....++....-.|+||.+.
T Consensus 117 iIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~~~~~~~~~~~~~~~~r~yG~t~ 178 (183)
T PF03602_consen 117 IIFLDPPYAKGLYYEELLELLAENNLLNEDGLIIIEHSKKEDLPESPGNWELIKERKYGDTK 178 (183)
T ss_dssp EEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEETTSSS-SEETTEEEEEEEEETTEE
T ss_pred EEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEEEecCCCCCccCCCCEEEEEEecCCCEE
Confidence 999998 65542 2333333 4678899999987 2444445555556667888754
No 8
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.74 E-value=6e-17 Score=174.50 Aligned_cols=139 Identities=26% Similarity=0.308 Sum_probs=114.2
Q ss_pred CCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhh---CCCcccE
Q 047386 121 KPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLT---HPKEFDV 197 (581)
Q Consensus 121 ~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~---~~~~fDv 197 (581)
.+.+|||+|||||.+||.++. +|+.+|+++|+|+.|++.+++|+++|+++. ++++++++|++.+|.. ...+||+
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~--~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~-~~v~~i~~D~~~~l~~~~~~~~~fDl 296 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALM--GGCSQVVSVDTSQEALDIARQNVELNKLDL-SKAEFVRDDVFKLLRTYRDRGEKFDV 296 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHh--CCCCEEEEEECCHHHHHHHHHHHHHcCCCC-CcEEEEEccHHHHHHHHHhcCCCCCE
Confidence 567999999999999999887 588899999999999999999999999852 3789999999999854 2457999
Q ss_pred EeeCCCCC-Ch------------HhHHHHHHhccCCCeEEEEeccchhhcCCCcchhhhhccCccCCCccchhhhHHHHH
Q 047386 198 VDLDPYGS-PS------------VFLDSAIQSVADGGMLMCTATDMAVLCGGNGEVCYSKYGSYPLRGKYCHEMALRILL 264 (581)
Q Consensus 198 IdLDPyGs-~~------------~fld~A~~~l~~gGlL~vTaTD~a~Lcg~~~~~c~rkYG~~~~k~~~~hE~~lRill 264 (581)
|++||+.. .. .++..|+++|++||+|.+++ |. +.++...|+
T Consensus 297 VilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~s------cs--------------------~~~~~~~f~ 350 (396)
T PRK15128 297 IVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFS------CS--------------------GLMTSDLFQ 350 (396)
T ss_pred EEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe------CC--------------------CcCCHHHHH
Confidence 99998532 11 23446889999999999877 64 447789999
Q ss_pred HHHHHHHHHcCCceEEE--eecccCc
Q 047386 265 ACIESHANRYKRYIEPV--LSVQMDF 288 (581)
Q Consensus 265 ~~i~~~Aa~~~r~i~Pl--ls~s~dh 288 (581)
..+.++|.+.++.++.+ ..++.||
T Consensus 351 ~~v~~aa~~~~~~~~~l~~~~~~~Dh 376 (396)
T PRK15128 351 KIIADAAIDAGRDVQFIEQFRQAADH 376 (396)
T ss_pred HHHHHHHHHcCCeEEEEEEcCCCCCC
Confidence 99999999999999964 3334444
No 9
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.73 E-value=3e-17 Score=169.66 Aligned_cols=138 Identities=25% Similarity=0.354 Sum_probs=100.1
Q ss_pred CCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhh--CCCcccEE
Q 047386 121 KPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLT--HPKEFDVV 198 (581)
Q Consensus 121 ~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~--~~~~fDvI 198 (581)
.+.+|||+||+||++|+.+++ .||.+|+.+|.|..|++.+++|+++|+++. ++++++++|++.+|.. ...+||+|
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~--gGA~~v~~VD~S~~al~~a~~N~~lNg~~~-~~~~~~~~Dvf~~l~~~~~~~~fD~I 199 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAA--GGAKEVVSVDSSKRALEWAKENAALNGLDL-DRHRFIQGDVFKFLKRLKKGGRFDLI 199 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHH--TTESEEEEEES-HHHHHHHHHHHHHTT-CC-TCEEEEES-HHHHHHHHHHTT-EEEE
T ss_pred CCCceEEecCCCCHHHHHHHH--CCCCEEEEEeCCHHHHHHHHHHHHHcCCCc-cceEEEecCHHHHHHHHhcCCCCCEE
Confidence 578999999999999999998 599999999999999999999999999963 6899999999998864 34689999
Q ss_pred eeCCCCCC----------hHhHHHHHHhccCCCeEEEEeccchhhcCCCcchhhhhccCccCCCccchhhhHHHHHHHHH
Q 047386 199 DLDPYGSP----------SVFLDSAIQSVADGGMLMCTATDMAVLCGGNGEVCYSKYGSYPLRGKYCHEMALRILLACIE 268 (581)
Q Consensus 199 dLDPyGs~----------~~fld~A~~~l~~gGlL~vTaTD~a~Lcg~~~~~c~rkYG~~~~k~~~~hE~~lRill~~i~ 268 (581)
+||||... ...+..|+++|++||+|.+++ |. |.+....|+..+.
T Consensus 200 IlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~s------cs--------------------~~i~~~~l~~~~~ 253 (286)
T PF10672_consen 200 ILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCS------CS--------------------HHISPDFLLEAVA 253 (286)
T ss_dssp EE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE----------------------------TTS-HHHHHHHHH
T ss_pred EECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEc------CC--------------------cccCHHHHHHHHH
Confidence 99996321 135667899999999998776 63 3367778888888
Q ss_pred HHHHHcCCceEEEeecccCce
Q 047386 269 SHANRYKRYIEPVLSVQMDFY 289 (581)
Q Consensus 269 ~~Aa~~~r~i~Plls~s~dhY 289 (581)
++|.. ..+.=.++.+.||.
T Consensus 254 ~~a~~--~~~~~~~~~p~df~ 272 (286)
T PF10672_consen 254 EAARE--VEFIERLGQPPDFP 272 (286)
T ss_dssp HHHHH--CEEEEEEE------
T ss_pred HhCcc--ceEeeeeccccccc
Confidence 87753 33334588888886
No 10
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=99.71 E-value=1.1e-16 Score=155.49 Aligned_cols=126 Identities=25% Similarity=0.348 Sum_probs=99.1
Q ss_pred CCCCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCc--cc
Q 047386 119 QLKPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKE--FD 196 (581)
Q Consensus 119 ~~~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~--fD 196 (581)
.+.+.+|||+|||||++||++++ |||.+|+++|.|..|+..|++|++..++. ..++++.+||..+|.....+ ||
T Consensus 41 ~i~g~~~LDlFAGSGaLGlEAlS--RGA~~~~~vE~~~~a~~~l~~N~~~l~~~--~~~~~~~~da~~~L~~~~~~~~FD 116 (187)
T COG0742 41 EIEGARVLDLFAGSGALGLEALS--RGAARVVFVEKDRKAVKILKENLKALGLE--GEARVLRNDALRALKQLGTREPFD 116 (187)
T ss_pred ccCCCEEEEecCCccHhHHHHHh--CCCceEEEEecCHHHHHHHHHHHHHhCCc--cceEEEeecHHHHHHhcCCCCccc
Confidence 47789999999999999999999 69999999999999999999999999986 67899999999888776545 99
Q ss_pred EEeeCC-CCCChHhH--HHHH------HhccCCCeEEEEec-c--chhhcCCCcchhhhhccCccC
Q 047386 197 VVDLDP-YGSPSVFL--DSAI------QSVADGGMLMCTAT-D--MAVLCGGNGEVCYSKYGSYPL 250 (581)
Q Consensus 197 vIdLDP-yGs~~~fl--d~A~------~~l~~gGlL~vTaT-D--~a~Lcg~~~~~c~rkYG~~~~ 250 (581)
+|++|| |.. .++ ..++ ..|+++|+++++.. | +..+..+....=-++||.+.+
T Consensus 117 lVflDPPy~~--~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~~~~~~~~~~~~~~r~k~yG~t~l 180 (187)
T COG0742 117 LVFLDPPYAK--GLLDKELALLLLEENGWLKPGALIVVEHDKDVELPELPANFELHREKKYGQTKL 180 (187)
T ss_pred EEEeCCCCcc--chhhHHHHHHHHHhcCCcCCCcEEEEEeCCCcCccccCCCeEEEEEeecCCEEE
Confidence 999998 653 333 2222 45899999999863 2 333344444444567776543
No 11
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=99.66 E-value=3.5e-16 Score=154.17 Aligned_cols=99 Identities=27% Similarity=0.377 Sum_probs=80.1
Q ss_pred CCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEeeC
Q 047386 122 PPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDLD 201 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdLD 201 (581)
+.+|||+|||.|.|+|.+|+- ..++.|+|+|+||+|++++++|+++|+++ +++.++++|++.++. ...||.|+++
T Consensus 102 ~e~VlD~faGIG~f~l~~ak~-~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~--~~i~~~~~D~~~~~~--~~~~drvim~ 176 (200)
T PF02475_consen 102 GEVVLDMFAGIGPFSLPIAKH-GKAKRVYAVDLNPDAVEYLKENIRLNKVE--NRIEVINGDAREFLP--EGKFDRVIMN 176 (200)
T ss_dssp T-EEEETT-TTTTTHHHHHHH-T-SSEEEEEES-HHHHHHHHHHHHHTT-T--TTEEEEES-GGG-----TT-EEEEEE-
T ss_pred ceEEEEccCCccHHHHHHhhh-cCccEEEEecCCHHHHHHHHHHHHHcCCC--CeEEEEcCCHHHhcC--ccccCEEEEC
Confidence 458999999999999999984 35688999999999999999999999997 689999999999987 5689999999
Q ss_pred CCCCChHhHHHHHHhccCCCeEEE
Q 047386 202 PYGSPSVFLDSAIQSVADGGMLMC 225 (581)
Q Consensus 202 PyGs~~~fld~A~~~l~~gGlL~v 225 (581)
.+.+...||+.|+.++++||+++.
T Consensus 177 lp~~~~~fl~~~~~~~~~~g~ihy 200 (200)
T PF02475_consen 177 LPESSLEFLDAALSLLKEGGIIHY 200 (200)
T ss_dssp -TSSGGGGHHHHHHHEEEEEEEEE
T ss_pred ChHHHHHHHHHHHHHhcCCcEEEC
Confidence 887778999999999999999873
No 12
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.63 E-value=2.4e-15 Score=146.82 Aligned_cols=126 Identities=16% Similarity=0.119 Sum_probs=95.5
Q ss_pred CCCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhC---CCccc
Q 047386 120 LKPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTH---PKEFD 196 (581)
Q Consensus 120 ~~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~---~~~fD 196 (581)
+.+.+|||+|||||.+||++++ +|+.+|+++|+|+.|++++++|++.|++. ++++++++|+..++... ...||
T Consensus 48 ~~g~~vLDLfaGsG~lglea~s--rga~~v~~vE~~~~a~~~~~~N~~~~~~~--~~~~~~~~D~~~~l~~~~~~~~~~d 123 (189)
T TIGR00095 48 IQGAHLLDVFAGSGLLGEEALS--RGAKVAFLEEDDRKANQTLKENLALLKSG--EQAEVVRNSALRALKFLAKKPTFDN 123 (189)
T ss_pred cCCCEEEEecCCCcHHHHHHHh--CCCCEEEEEeCCHHHHHHHHHHHHHhCCc--ccEEEEehhHHHHHHHhhccCCCce
Confidence 4577999999999999999999 59999999999999999999999999985 57899999998887532 23589
Q ss_pred EEeeCC-CCCC--hHhHHHHH--HhccCCCeEEEEeccchhh---cCCCcchhhhhccCcc
Q 047386 197 VVDLDP-YGSP--SVFLDSAI--QSVADGGMLMCTATDMAVL---CGGNGEVCYSKYGSYP 249 (581)
Q Consensus 197 vIdLDP-yGs~--~~fld~A~--~~l~~gGlL~vTaTD~a~L---cg~~~~~c~rkYG~~~ 249 (581)
+|++|| |+.. .+.+.... .+++++|++++++.....+ .+.....-.|+||.+.
T Consensus 124 vv~~DPPy~~~~~~~~l~~l~~~~~l~~~~iiv~E~~~~~~~~~~~~~~~~~~~r~yG~t~ 184 (189)
T TIGR00095 124 VIYLDPPFFNGALQALLELCENNWILEDTVLIVVEEDREPELPPVEAWLSLKRQKKGGVSY 184 (189)
T ss_pred EEEECcCCCCCcHHHHHHHHHHCCCCCCCeEEEEEecCCCCCCCCcCCeEEEEEeecCcEE
Confidence 999999 5431 12222211 3578999999987543333 2223334558888764
No 13
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=99.62 E-value=1.6e-14 Score=152.25 Aligned_cols=144 Identities=25% Similarity=0.267 Sum_probs=114.1
Q ss_pred CCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEeeC
Q 047386 122 PPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDLD 201 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdLD 201 (581)
|.+|||+|||.|.|+|-+|+. |...|+|+|+||+|++++++|+++|++. +.+++++||++.+.... ..||-|+|-
T Consensus 189 GE~V~DmFAGVGpfsi~~Ak~--g~~~V~A~diNP~A~~~L~eNi~LN~v~--~~v~~i~gD~rev~~~~-~~aDrIim~ 263 (341)
T COG2520 189 GETVLDMFAGVGPFSIPIAKK--GRPKVYAIDINPDAVEYLKENIRLNKVE--GRVEPILGDAREVAPEL-GVADRIIMG 263 (341)
T ss_pred CCEEEEccCCcccchhhhhhc--CCceEEEEecCHHHHHHHHHHHHhcCcc--ceeeEEeccHHHhhhcc-ccCCEEEeC
Confidence 669999999999999999995 7666999999999999999999999997 56999999999998753 579999999
Q ss_pred CCCCChHhHHHHHHhccCCCeEEEEeccchhhcCCCcchhhhhccCccCCCccchhhhHH-HHHHHHHHHHHHcCCceEE
Q 047386 202 PYGSPSVFLDSAIQSVADGGMLMCTATDMAVLCGGNGEVCYSKYGSYPLRGKYCHEMALR-ILLACIESHANRYKRYIEP 280 (581)
Q Consensus 202 PyGs~~~fld~A~~~l~~gGlL~vTaTD~a~Lcg~~~~~c~rkYG~~~~k~~~~hE~~lR-ill~~i~~~Aa~~~r~i~P 280 (581)
=+.++..|++.|+.++++||+|.+-- +++|-.+. .....|...|.+.++..++
T Consensus 264 ~p~~a~~fl~~A~~~~k~~g~iHyy~--------------------------~~~e~~~~~~~~~~i~~~~~~~~~~~~v 317 (341)
T COG2520 264 LPKSAHEFLPLALELLKDGGIIHYYE--------------------------FVPEDDIEERPEKRIKSAARKGGYKVEV 317 (341)
T ss_pred CCCcchhhHHHHHHHhhcCcEEEEEe--------------------------ccchhhcccchHHHHHHHHhhccCcceE
Confidence 77777899999999999999998753 12222221 1566777888888776655
Q ss_pred E-----eecccC-ceEEEEEEE
Q 047386 281 V-----LSVQMD-FYVRVFVRI 296 (581)
Q Consensus 281 l-----ls~s~d-hY~RvfVrV 296 (581)
+ -|++.. +-+++=+||
T Consensus 318 ~~~r~VksysP~v~hv~vd~~v 339 (341)
T COG2520 318 LKVRRVKSYSPGVYHVVVDLRV 339 (341)
T ss_pred EEEEEecccCCCeeEEEEEEEe
Confidence 3 455554 334455554
No 14
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.61 E-value=1.7e-14 Score=165.75 Aligned_cols=134 Identities=18% Similarity=0.228 Sum_probs=108.6
Q ss_pred CCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEeeC
Q 047386 122 PPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDLD 201 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdLD 201 (581)
+.+|||+|||||.+||.+++ .|+.+|+++|+|+.|++.+++|+++|++.. ++++++++|++.+|.....+||+|++|
T Consensus 539 g~rVLDlf~gtG~~sl~aa~--~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~-~~v~~i~~D~~~~l~~~~~~fDlIilD 615 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAAL--GGAKSTTTVDMSNTYLEWAERNFALNGLSG-RQHRLIQADCLAWLKEAREQFDLIFID 615 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHH--CCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-cceEEEEccHHHHHHHcCCCcCEEEEC
Confidence 45899999999999999998 489999999999999999999999999852 479999999999986545689999999
Q ss_pred CCCCC---------------hHhHHHHHHhccCCCeEEEEeccchhhcCCCcchhhhhccCccCCCccchhhhHHHHHHH
Q 047386 202 PYGSP---------------SVFLDSAIQSVADGGMLMCTATDMAVLCGGNGEVCYSKYGSYPLRGKYCHEMALRILLAC 266 (581)
Q Consensus 202 PyGs~---------------~~fld~A~~~l~~gGlL~vTaTD~a~Lcg~~~~~c~rkYG~~~~k~~~~hE~~lRill~~ 266 (581)
|+..+ ..++..++++|++||+|++++ |... +. .
T Consensus 616 PP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~------~~~~--------------------~~------~ 663 (702)
T PRK11783 616 PPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSN------NKRG--------------------FK------M 663 (702)
T ss_pred CCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEe------CCcc--------------------CC------h
Confidence 95321 135677889999999998875 4221 11 1
Q ss_pred HHHHHHHcCCceEEE--eecccCceE
Q 047386 267 IESHANRYKRYIEPV--LSVQMDFYV 290 (581)
Q Consensus 267 i~~~Aa~~~r~i~Pl--ls~s~dhY~ 290 (581)
...++.+.|+.++.+ .+++.||.+
T Consensus 664 ~~~~~~~~g~~~~~i~~~~~~~Dhp~ 689 (702)
T PRK11783 664 DEEGLAKLGLKAEEITAKTLPPDFAR 689 (702)
T ss_pred hHHHHHhCCCeEEEEecCCCCCCCCC
Confidence 156667789999987 888889974
No 15
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.52 E-value=1.4e-13 Score=135.72 Aligned_cols=123 Identities=15% Similarity=0.131 Sum_probs=91.4
Q ss_pred CCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEee
Q 047386 121 KPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDL 200 (581)
Q Consensus 121 ~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdL 200 (581)
.+.+|||+|||||.+||.+++ +++.+|+++|+|+.|++.+++|++.|++. +++++++|+..++......||+|++
T Consensus 53 ~~~~vLDl~~GsG~l~l~~ls--r~a~~V~~vE~~~~a~~~a~~Nl~~~~~~---~v~~~~~D~~~~l~~~~~~fDlV~~ 127 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALS--RYAAGATLLEMDRAVAQQLIKNLATLKAG---NARVVNTNALSFLAQPGTPHNVVFV 127 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHH--cCCCEEEEEECCHHHHHHHHHHHHHhCCC---cEEEEEchHHHHHhhcCCCceEEEE
Confidence 356899999999999999887 47889999999999999999999999974 6899999999888543456999999
Q ss_pred CCC-CCChHhHHHHHHh------ccCCCeEEEEeccc---hhhcCCCcchhhhhccCccC
Q 047386 201 DPY-GSPSVFLDSAIQS------VADGGMLMCTATDM---AVLCGGNGEVCYSKYGSYPL 250 (581)
Q Consensus 201 DPy-Gs~~~fld~A~~~------l~~gGlL~vTaTD~---a~Lcg~~~~~c~rkYG~~~~ 250 (581)
||+ .. .+...+++. +.++|+++|++.-. ..+-.....-=.++||.+-+
T Consensus 128 DPPy~~--g~~~~~l~~l~~~~~l~~~~iv~ve~~~~~~~~~~~~~~~~~~~k~yG~s~~ 185 (199)
T PRK10909 128 DPPFRK--GLLEETINLLEDNGWLADEALIYVESEVENGLPTVPANWQLHREKVAGQVAY 185 (199)
T ss_pred CCCCCC--ChHHHHHHHHHHCCCcCCCcEEEEEecCCCCcccCCCccEEEEEecCCCEEE
Confidence 985 43 333333332 57789999987332 22222222234567776543
No 16
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.41 E-value=1.9e-12 Score=114.29 Aligned_cols=101 Identities=35% Similarity=0.486 Sum_probs=85.2
Q ss_pred CeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhh-CCCcccEEeeC
Q 047386 123 PRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLT-HPKEFDVVDLD 201 (581)
Q Consensus 123 ~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~-~~~~fDvIdLD 201 (581)
.+|||++||+|.+++.++.. +..+|+++|+|+.++++.++|+..+++. ++++++++|+..+... ...+||+|+.|
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~--~~~~~~gvdi~~~~~~~a~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~D~Iv~n 77 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRR--GAARVTGVDIDPEAVELARRNLPRNGLD--DRVEVIVGDARDLPEPLPDGKFDLIVTN 77 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHH--CTCEEEEEESSHHHHHHHHHHCHHCTTT--TTEEEEESHHHHHHHTCTTT-EEEEEE-
T ss_pred CEEEEcCcchHHHHHHHHHH--CCCeEEEEEECHHHHHHHHHHHHHccCC--ceEEEEECchhhchhhccCceeEEEEEC
Confidence 48999999999999999986 4789999999999999999999999986 6799999999998833 25789999999
Q ss_pred C-CCCC-----------hHhHHHHHHhccCCCeEEEEe
Q 047386 202 P-YGSP-----------SVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 202 P-yGs~-----------~~fld~A~~~l~~gGlL~vTa 227 (581)
| |+.. ..|++.+.+.|++||.+.+..
T Consensus 78 pP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 78 PPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp -STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 8 5431 367889999999999998753
No 17
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=99.32 E-value=1.1e-11 Score=132.40 Aligned_cols=97 Identities=26% Similarity=0.277 Sum_probs=77.1
Q ss_pred CeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhC-----------
Q 047386 123 PRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTH----------- 191 (581)
Q Consensus 123 ~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~----------- 191 (581)
.+|||+|||||.+|+.+++ ++++|+++|+|+.|++.+++|++.|+++ +++++++|+..++...
T Consensus 208 ~~vLDl~~G~G~~sl~la~---~~~~v~~vE~~~~ai~~a~~N~~~~~~~---~v~~~~~d~~~~l~~~~~~~~~~~~~~ 281 (362)
T PRK05031 208 GDLLELYCGNGNFTLALAR---NFRRVLATEISKPSVAAAQYNIAANGID---NVQIIRMSAEEFTQAMNGVREFNRLKG 281 (362)
T ss_pred CeEEEEeccccHHHHHHHh---hCCEEEEEECCHHHHHHHHHHHHHhCCC---cEEEEECCHHHHHHHHhhccccccccc
Confidence 4799999999999996665 5789999999999999999999999984 7899999999887531
Q ss_pred ----CCcccEEeeCCCCCChHhHHHHHHhc-cCCCeEEEEe
Q 047386 192 ----PKEFDVVDLDPYGSPSVFLDSAIQSV-ADGGMLMCTA 227 (581)
Q Consensus 192 ----~~~fDvIdLDPyGs~~~fld~A~~~l-~~gGlL~vTa 227 (581)
..+||+|++||+-+ .....+++.| +.++++||+|
T Consensus 282 ~~~~~~~~D~v~lDPPR~--G~~~~~l~~l~~~~~ivyvSC 320 (362)
T PRK05031 282 IDLKSYNFSTIFVDPPRA--GLDDETLKLVQAYERILYISC 320 (362)
T ss_pred ccccCCCCCEEEECCCCC--CCcHHHHHHHHccCCEEEEEe
Confidence 12589999999733 2222222322 3689999997
No 18
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=99.30 E-value=1.8e-11 Score=130.36 Aligned_cols=103 Identities=20% Similarity=0.179 Sum_probs=81.4
Q ss_pred CeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhC---------C-
Q 047386 123 PRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTH---------P- 192 (581)
Q Consensus 123 ~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~---------~- 192 (581)
.+|||+|||||.+|+.+++ ++.+|+++|+|+.|++.+++|++.|+++ +++++++|+..++... .
T Consensus 199 ~~vlDl~~G~G~~sl~la~---~~~~v~~vE~~~~av~~a~~n~~~~~~~---~v~~~~~d~~~~~~~~~~~~~~~~~~~ 272 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQ---NFRRVLATEIAKPSVNAAQYNIAANNID---NVQIIRMSAEEFTQAMNGVREFRRLKG 272 (353)
T ss_pred CcEEEEeccccHHHHHHHH---hCCEEEEEECCHHHHHHHHHHHHHcCCC---cEEEEEcCHHHHHHHHhhccccccccc
Confidence 4799999999999996665 5679999999999999999999999984 6899999999988531 1
Q ss_pred -----CcccEEeeCCCCC--ChHhHHHHHHhccCCCeEEEEe------ccchhhc
Q 047386 193 -----KEFDVVDLDPYGS--PSVFLDSAIQSVADGGMLMCTA------TDMAVLC 234 (581)
Q Consensus 193 -----~~fDvIdLDPyGs--~~~fld~A~~~l~~gGlL~vTa------TD~a~Lc 234 (581)
.+||+|++||+.+ ....++... ++++++||+| .|+..|+
T Consensus 273 ~~~~~~~~d~v~lDPPR~G~~~~~l~~l~---~~~~ivYvsC~p~tlaRDl~~L~ 324 (353)
T TIGR02143 273 IDLKSYNCSTIFVDPPRAGLDPDTCKLVQ---AYERILYISCNPETLKANLEQLS 324 (353)
T ss_pred cccccCCCCEEEECCCCCCCcHHHHHHHH---cCCcEEEEEcCHHHHHHHHHHHh
Confidence 2489999999743 334444322 3789999997 2555554
No 19
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.29 E-value=2.5e-11 Score=130.14 Aligned_cols=100 Identities=12% Similarity=0.162 Sum_probs=83.6
Q ss_pred CCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEee
Q 047386 121 KPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDL 200 (581)
Q Consensus 121 ~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdL 200 (581)
.+.+|||+|||||.+|+.+|+ ++ .+|+++|+|+.|++.+++|++.|+++ +++++++|+..++......||+|++
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~--~~-~~v~~vE~~~~av~~a~~N~~~~~~~---~~~~~~~d~~~~~~~~~~~~D~vi~ 306 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAG--PD-TQLTGIEIESEAIACAQQSAQMLGLD---NLSFAALDSAKFATAQMSAPELVLV 306 (374)
T ss_pred CCCEEEEccCCccHHHHHHhh--cC-CeEEEEECCHHHHHHHHHHHHHcCCC---cEEEEECCHHHHHHhcCCCCCEEEE
Confidence 456899999999999999997 45 68999999999999999999999984 6899999999887543346999999
Q ss_pred CCC--CCChHhHHHHHHhccCCCeEEEEe
Q 047386 201 DPY--GSPSVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 201 DPy--Gs~~~fld~A~~~l~~gGlL~vTa 227 (581)
||+ |....+++.. ..++++++++|+|
T Consensus 307 DPPr~G~~~~~l~~l-~~~~p~~ivyvsc 334 (374)
T TIGR02085 307 NPPRRGIGKELCDYL-SQMAPKFILYSSC 334 (374)
T ss_pred CCCCCCCcHHHHHHH-HhcCCCeEEEEEe
Confidence 996 3344555554 4578999999997
No 20
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=2.9e-11 Score=131.85 Aligned_cols=108 Identities=24% Similarity=0.298 Sum_probs=91.6
Q ss_pred CCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhC--CCcccEE
Q 047386 121 KPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTH--PKEFDVV 198 (581)
Q Consensus 121 ~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~--~~~fDvI 198 (581)
.+.++||+|||.|.|||..|+ .+.+|+++|+++.|++.+++|++.|++. ++++..+||..++... ...||+|
T Consensus 293 ~~~~vlDlYCGvG~f~l~lA~---~~~~V~gvEi~~~aV~~A~~NA~~n~i~---N~~f~~~~ae~~~~~~~~~~~~d~V 366 (432)
T COG2265 293 GGERVLDLYCGVGTFGLPLAK---RVKKVHGVEISPEAVEAAQENAAANGID---NVEFIAGDAEEFTPAWWEGYKPDVV 366 (432)
T ss_pred CCCEEEEeccCCChhhhhhcc---cCCEEEEEecCHHHHHHHHHHHHHcCCC---cEEEEeCCHHHHhhhccccCCCCEE
Confidence 456899999999999999997 5789999999999999999999999995 5999999999998764 3578999
Q ss_pred eeCCCCC--ChHhHHHHHHhccCCCeEEEEe------ccchhhcC
Q 047386 199 DLDPYGS--PSVFLDSAIQSVADGGMLMCTA------TDMAVLCG 235 (581)
Q Consensus 199 dLDPyGs--~~~fld~A~~~l~~gGlL~vTa------TD~a~Lcg 235 (581)
++||+.+ ...+++. +..+++..++||+| -|...|+.
T Consensus 367 vvDPPR~G~~~~~lk~-l~~~~p~~IvYVSCNP~TlaRDl~~L~~ 410 (432)
T COG2265 367 VVDPPRAGADREVLKQ-LAKLKPKRIVYVSCNPATLARDLAILAS 410 (432)
T ss_pred EECCCCCCCCHHHHHH-HHhcCCCcEEEEeCCHHHHHHHHHHHHh
Confidence 9999844 5567775 55688999999998 25556653
No 21
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.19 E-value=1.8e-10 Score=120.63 Aligned_cols=101 Identities=15% Similarity=0.173 Sum_probs=82.8
Q ss_pred CCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEee
Q 047386 121 KPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDL 200 (581)
Q Consensus 121 ~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdL 200 (581)
.+.+|||++||+|.+++.+|+ +| .+|+++|+|+.|++.+++|++.|++. +++++++|+..++......||+|++
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~--~~-~~V~gvD~s~~av~~A~~n~~~~~l~---~v~~~~~D~~~~~~~~~~~~D~Vv~ 246 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCAT--PG-MQLTGIEISAEAIACAKQSAAELGLT---NVQFQALDSTQFATAQGEVPDLVLV 246 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHh--cC-CEEEEEeCCHHHHHHHHHHHHHcCCC---ceEEEEcCHHHHHHhcCCCCeEEEE
Confidence 467999999999999999998 45 68999999999999999999999984 6899999999887543347999999
Q ss_pred CCCCCC-hHhHHHHHHhccCCCeEEEEe
Q 047386 201 DPYGSP-SVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 201 DPyGs~-~~fld~A~~~l~~gGlL~vTa 227 (581)
||+-.. .+-+-..+..+.++++++++|
T Consensus 247 dPPr~G~~~~~~~~l~~~~~~~ivyvsc 274 (315)
T PRK03522 247 NPPRRGIGKELCDYLSQMAPRFILYSSC 274 (315)
T ss_pred CCCCCCccHHHHHHHHHcCCCeEEEEEC
Confidence 997331 223333455577889999996
No 22
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.18 E-value=2.4e-10 Score=117.00 Aligned_cols=103 Identities=27% Similarity=0.373 Sum_probs=84.7
Q ss_pred CCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEee
Q 047386 121 KPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDL 200 (581)
Q Consensus 121 ~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdL 200 (581)
.+.+|||++||+|..++.++....+...|+++|+++..++.+++|++.+++. ++++++.|+..+... ...||+|++
T Consensus 71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~---~v~~~~~D~~~~~~~-~~~fD~Vl~ 146 (264)
T TIGR00446 71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVL---NVAVTNFDGRVFGAA-VPKFDAILL 146 (264)
T ss_pred CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC---cEEEecCCHHHhhhh-ccCCCEEEE
Confidence 4678999999999999999876544458999999999999999999999984 589999999876432 346999999
Q ss_pred CCCCCC--------------------------hHhHHHHHHhccCCCeEEEEe
Q 047386 201 DPYGSP--------------------------SVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 201 DPyGs~--------------------------~~fld~A~~~l~~gGlL~vTa 227 (581)
||+-|. ..+|+.|+++|++||.|..+.
T Consensus 147 D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYst 199 (264)
T TIGR00446 147 DAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYST 199 (264)
T ss_pred cCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 985331 137788999999999887654
No 23
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.15 E-value=1.1e-10 Score=111.51 Aligned_cols=99 Identities=26% Similarity=0.316 Sum_probs=80.3
Q ss_pred CCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEeeC
Q 047386 122 PPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDLD 201 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdLD 201 (581)
+.+|||+.||||+.|+.+++..+. ..|+++|+|+.|++++++|++.|+++ + +++++.|....+. ..+||+|+.+
T Consensus 32 ~~~vLDlG~G~G~i~~~la~~~~~-~~v~~vDi~~~a~~~a~~n~~~n~~~--~-v~~~~~d~~~~~~--~~~fD~Iv~N 105 (170)
T PF05175_consen 32 GGRVLDLGCGSGVISLALAKRGPD-AKVTAVDINPDALELAKRNAERNGLE--N-VEVVQSDLFEALP--DGKFDLIVSN 105 (170)
T ss_dssp TCEEEEETSTTSHHHHHHHHTSTC-EEEEEEESBHHHHHHHHHHHHHTTCT--T-EEEEESSTTTTCC--TTCEEEEEE-
T ss_pred CCeEEEecCChHHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHHHhcCcc--c-ccccccccccccc--ccceeEEEEc
Confidence 458999999999999999996443 26999999999999999999999986 3 9999999876554 4689999999
Q ss_pred CCC---CC------hHhHHHHHHhccCCCeEEEE
Q 047386 202 PYG---SP------SVFLDSAIQSVADGGMLMCT 226 (581)
Q Consensus 202 PyG---s~------~~fld~A~~~l~~gGlL~vT 226 (581)
||- .. ..|+..|.+.|++||.|++-
T Consensus 106 PP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv 139 (170)
T PF05175_consen 106 PPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLV 139 (170)
T ss_dssp --SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cchhcccccchhhHHHHHHHHHHhccCCCEEEEE
Confidence 952 21 35778889999999988653
No 24
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.15 E-value=2.6e-10 Score=99.68 Aligned_cols=102 Identities=22% Similarity=0.240 Sum_probs=84.2
Q ss_pred CCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEeeC
Q 047386 122 PPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDLD 201 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdLD 201 (581)
+.+|||+-||+|..++.+++..+++ +|+++|+|+.+++.+++|+..++.. ++++++++|+ ........+||+|+++
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~--~~i~~~~~d~-~~~~~~~~~~D~v~~~ 77 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGA-RVVGVDISPEMLEIARERAAEEGLS--DRITFVQGDA-EFDPDFLEPFDLVICS 77 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTS-EEEEEESSHHHHHHHHHHHHHTTTT--TTEEEEESCC-HGGTTTSSCEEEEEEC
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCC-EEEEEeCCHHHHHHHHHHHHhcCCC--CCeEEEECcc-ccCcccCCCCCEEEEC
Confidence 5689999999999999999954555 5999999999999999999777775 6899999999 5444445679999998
Q ss_pred CC-C--CC-----hHhHHHHHHhccCCCeEEEEe
Q 047386 202 PY-G--SP-----SVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 202 Py-G--s~-----~~fld~A~~~l~~gGlL~vTa 227 (581)
-+ . .. ..+++...+.|++||+|.++.
T Consensus 78 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 78 GFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 82 1 11 245788889999999999975
No 25
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.15 E-value=2.4e-10 Score=124.39 Aligned_cols=99 Identities=23% Similarity=0.289 Sum_probs=83.6
Q ss_pred CCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhC---CCcccEE
Q 047386 122 PPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTH---PKEFDVV 198 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~---~~~fDvI 198 (581)
+.+|||++||+|.+++.+++. +.+|+++|+|+.+++.+++|++.|++. +++++++|+..++... ...||+|
T Consensus 293 ~~~vLDl~cG~G~~sl~la~~---~~~V~~vE~~~~av~~a~~n~~~~~~~---nv~~~~~d~~~~l~~~~~~~~~~D~v 366 (431)
T TIGR00479 293 EELVVDAYCGVGTFTLPLAKQ---AKSVVGIEVVPESVEKAQQNAELNGIA---NVEFLAGTLETVLPKQPWAGQIPDVL 366 (431)
T ss_pred CCEEEEcCCCcCHHHHHHHHh---CCEEEEEEcCHHHHHHHHHHHHHhCCC---ceEEEeCCHHHHHHHHHhcCCCCCEE
Confidence 468999999999999999983 578999999999999999999999984 7999999999876532 2469999
Q ss_pred eeCCC--CCChHhHHHHHHhccCCCeEEEEe
Q 047386 199 DLDPY--GSPSVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 199 dLDPy--Gs~~~fld~A~~~l~~gGlL~vTa 227 (581)
++||+ |....+++. +..++++++++++|
T Consensus 367 i~dPPr~G~~~~~l~~-l~~l~~~~ivyvsc 396 (431)
T TIGR00479 367 LLDPPRKGCAAEVLRT-IIELKPERIVYVSC 396 (431)
T ss_pred EECcCCCCCCHHHHHH-HHhcCCCEEEEEcC
Confidence 99996 434567764 55688999999986
No 26
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.13 E-value=3e-10 Score=110.66 Aligned_cols=89 Identities=30% Similarity=0.387 Sum_probs=78.7
Q ss_pred cCCCCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccE
Q 047386 118 RQLKPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDV 197 (581)
Q Consensus 118 ~~~~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDv 197 (581)
+.+.+.+|||+-||||.+||-++.- |+..|+++|+|++|++.+++|++.++ ++++++.+|+..+- .+||.
T Consensus 42 g~l~g~~V~DlG~GTG~La~ga~~l--Ga~~V~~vdiD~~a~ei~r~N~~~l~----g~v~f~~~dv~~~~----~~~dt 111 (198)
T COG2263 42 GDLEGKTVLDLGAGTGILAIGAALL--GASRVLAVDIDPEALEIARANAEELL----GDVEFVVADVSDFR----GKFDT 111 (198)
T ss_pred CCcCCCEEEEcCCCcCHHHHHHHhc--CCcEEEEEecCHHHHHHHHHHHHhhC----CceEEEEcchhhcC----Cccce
Confidence 5678889999999999999999884 99999999999999999999999844 46999999998774 47999
Q ss_pred EeeCC-CCC-----ChHhHHHHHHh
Q 047386 198 VDLDP-YGS-----PSVFLDSAIQS 216 (581)
Q Consensus 198 IdLDP-yGs-----~~~fld~A~~~ 216 (581)
|+++| ||+ ..+||+.|+..
T Consensus 112 vimNPPFG~~~rhaDr~Fl~~Ale~ 136 (198)
T COG2263 112 VIMNPPFGSQRRHADRPFLLKALEI 136 (198)
T ss_pred EEECCCCccccccCCHHHHHHHHHh
Confidence 99998 776 35999999985
No 27
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.13 E-value=7.5e-10 Score=108.15 Aligned_cols=105 Identities=19% Similarity=0.259 Sum_probs=87.8
Q ss_pred CCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEee
Q 047386 121 KPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDL 200 (581)
Q Consensus 121 ~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdL 200 (581)
.+.+|||+.||||.+++.+++..+...+|+++|+|+.+++.+++|++.|++. ++++++++|+..++......||+|++
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~--~~v~~~~~d~~~~l~~~~~~~D~V~~ 117 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVL--NNIVLIKGEAPEILFTINEKFDRIFI 117 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCC--CCeEEEEechhhhHhhcCCCCCEEEE
Confidence 4568999999999999999886544468999999999999999999999964 57899999998877544468999999
Q ss_pred CCC-CCChHhHHHHHHhccCCCeEEEEe
Q 047386 201 DPY-GSPSVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 201 DPy-Gs~~~fld~A~~~l~~gGlL~vTa 227 (581)
... .....+++.+.+.|++||.|++..
T Consensus 118 ~~~~~~~~~~l~~~~~~LkpgG~lv~~~ 145 (198)
T PRK00377 118 GGGSEKLKEIISASWEIIKKGGRIVIDA 145 (198)
T ss_pred CCCcccHHHHHHHHHHHcCCCcEEEEEe
Confidence 763 234578899999999999998754
No 28
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.11 E-value=5e-10 Score=112.86 Aligned_cols=105 Identities=24% Similarity=0.216 Sum_probs=89.7
Q ss_pred CCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhC-----CCcc
Q 047386 121 KPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTH-----PKEF 195 (581)
Q Consensus 121 ~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~-----~~~f 195 (581)
.+.+|||+.+|+|.-+|..+..+++..+|+++|+|+++++.+++|++.+|+. ++++++++||...|... ...|
T Consensus 68 ~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~--~~i~~~~gda~~~L~~l~~~~~~~~f 145 (234)
T PLN02781 68 NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVD--HKINFIQSDALSALDQLLNNDPKPEF 145 (234)
T ss_pred CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC--CcEEEEEccHHHHHHHHHhCCCCCCC
Confidence 4679999999999988888876666779999999999999999999999996 68999999999987642 3589
Q ss_pred cEEeeCCC-CCChHhHHHHHHhccCCCeEEEEe
Q 047386 196 DVVDLDPY-GSPSVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 196 DvIdLDPy-Gs~~~fld~A~~~l~~gGlL~vTa 227 (581)
|+|++|.. .....+++.++++|++||+|++.-
T Consensus 146 D~VfiDa~k~~y~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 146 DFAFVDADKPNYVHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 99999963 222478888999999999998864
No 29
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.11 E-value=6.3e-10 Score=115.20 Aligned_cols=101 Identities=21% Similarity=0.299 Sum_probs=83.6
Q ss_pred CCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEeeC
Q 047386 122 PPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDLD 201 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdLD 201 (581)
+.+|||+.||||.+++.+++..++ .+|+++|+|+.|++.+++|++.|++. ++++++++|+...+. ...||+|+.|
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~~~-~~v~avDis~~al~~A~~n~~~~~~~--~~i~~~~~D~~~~~~--~~~fD~Iv~N 196 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAFPE-AEVDAVDISPDALAVAEINIERHGLE--DRVTLIQSDLFAALP--GRKYDLIVSN 196 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCCC--CcEEEEECchhhccC--CCCccEEEEC
Confidence 458999999999999999997554 47999999999999999999999985 579999999876553 3479999999
Q ss_pred C-CCCC----------------------------hHhHHHHHHhccCCCeEEEEe
Q 047386 202 P-YGSP----------------------------SVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 202 P-yGs~----------------------------~~fld~A~~~l~~gGlL~vTa 227 (581)
| |... ..++..+.+.|++||.|+++.
T Consensus 197 PPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~ 251 (284)
T TIGR03533 197 PPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEV 251 (284)
T ss_pred CCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 8 4321 134566778999999999985
No 30
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.09 E-value=6.9e-10 Score=112.98 Aligned_cols=98 Identities=24% Similarity=0.256 Sum_probs=79.3
Q ss_pred CeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhh-CCCcccEEeeC
Q 047386 123 PRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLT-HPKEFDVVDLD 201 (581)
Q Consensus 123 ~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~-~~~~fDvIdLD 201 (581)
.+|||++||||.+++.++++.++ .+|+++|+|+.|++.+++|++.|++ +++++|+...+.. ...+||+|+.|
T Consensus 88 ~~vLDlg~GsG~i~l~la~~~~~-~~v~~vDis~~al~~A~~N~~~~~~------~~~~~D~~~~l~~~~~~~fDlVv~N 160 (251)
T TIGR03704 88 LVVVDLCCGSGAVGAALAAALDG-IELHAADIDPAAVRCARRNLADAGG------TVHEGDLYDALPTALRGRVDILAAN 160 (251)
T ss_pred CEEEEecCchHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCC------EEEEeechhhcchhcCCCEeEEEEC
Confidence 48999999999999999987555 4799999999999999999998873 5788998776532 13579999999
Q ss_pred CCCCC------------------------------hHhHHHHHHhccCCCeEEEEe
Q 047386 202 PYGSP------------------------------SVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 202 PyGs~------------------------------~~fld~A~~~l~~gGlL~vTa 227 (581)
|+..+ ..++..|.+.|++||.|++..
T Consensus 161 PPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~ 216 (251)
T TIGR03704 161 APYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVET 216 (251)
T ss_pred CCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 84321 145566778999999999874
No 31
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.09 E-value=7.7e-10 Score=121.07 Aligned_cols=100 Identities=25% Similarity=0.283 Sum_probs=82.7
Q ss_pred CCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhh---CCCcccE
Q 047386 121 KPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLT---HPKEFDV 197 (581)
Q Consensus 121 ~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~---~~~~fDv 197 (581)
.+.+|||++||||.+++.+|.. +.+|+++|+|+.|++.+++|++.|++. +++++++|+...+.. ....||+
T Consensus 297 ~~~~VLDlgcGtG~~sl~la~~---~~~V~gvD~s~~al~~A~~n~~~~~~~---~v~~~~~d~~~~l~~~~~~~~~fD~ 370 (443)
T PRK13168 297 PGDRVLDLFCGLGNFTLPLARQ---AAEVVGVEGVEAMVERARENARRNGLD---NVTFYHANLEEDFTDQPWALGGFDK 370 (443)
T ss_pred CCCEEEEEeccCCHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCC---ceEEEEeChHHhhhhhhhhcCCCCE
Confidence 4569999999999999999984 368999999999999999999999984 689999999887642 1346999
Q ss_pred EeeCCCCC-ChHhHHHHHHhccCCCeEEEEe
Q 047386 198 VDLDPYGS-PSVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 198 IdLDPyGs-~~~fld~A~~~l~~gGlL~vTa 227 (581)
|++||+.. ....+ .++..++++++++|+|
T Consensus 371 Vi~dPPr~g~~~~~-~~l~~~~~~~ivyvSC 400 (443)
T PRK13168 371 VLLDPPRAGAAEVM-QALAKLGPKRIVYVSC 400 (443)
T ss_pred EEECcCCcChHHHH-HHHHhcCCCeEEEEEe
Confidence 99999633 33555 4555578999999997
No 32
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.08 E-value=7.9e-10 Score=120.96 Aligned_cols=104 Identities=28% Similarity=0.339 Sum_probs=85.9
Q ss_pred CCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEee
Q 047386 121 KPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDL 200 (581)
Q Consensus 121 ~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdL 200 (581)
.+.+|||++||+|..++.++....+...|+++|+|+.+++.+++|++.+|+. +++++++|+..++......||+|++
T Consensus 250 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~---~v~~~~~D~~~~~~~~~~~fD~Vl~ 326 (444)
T PRK14902 250 GGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLT---NIETKALDARKVHEKFAEKFDKILV 326 (444)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC---eEEEEeCCcccccchhcccCCEEEE
Confidence 4568999999999999999987544568999999999999999999999985 4899999998765322357999999
Q ss_pred CCCCCC--------------------------hHhHHHHHHhccCCCeEEEEe
Q 047386 201 DPYGSP--------------------------SVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 201 DPyGs~--------------------------~~fld~A~~~l~~gGlL~vTa 227 (581)
||+-+. ..+|..|.+.|++||.|.++.
T Consensus 327 D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvyst 379 (444)
T PRK14902 327 DAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYST 379 (444)
T ss_pred cCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEc
Confidence 985221 136788999999999988754
No 33
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.07 E-value=1.3e-09 Score=96.30 Aligned_cols=102 Identities=21% Similarity=0.195 Sum_probs=85.2
Q ss_pred CCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEeeC
Q 047386 122 PPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDLD 201 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdLD 201 (581)
+.+|||+.||+|..++.+++..++ .+|+++|+|+.+++.+++|++.+++. +++++.+|+...+.....+||+|+++
T Consensus 20 ~~~vldlG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~D~v~~~ 95 (124)
T TIGR02469 20 GDVLWDIGAGSGSITIEAARLVPN-GRVYAIERNPEALRLIERNARRFGVS---NIVIVEGDAPEALEDSLPEPDRVFIG 95 (124)
T ss_pred CCEEEEeCCCCCHHHHHHHHHCCC-ceEEEEcCCHHHHHHHHHHHHHhCCC---ceEEEeccccccChhhcCCCCEEEEC
Confidence 458999999999999999997554 78999999999999999999999874 58889999876443334589999998
Q ss_pred C-CCCChHhHHHHHHhccCCCeEEEEe
Q 047386 202 P-YGSPSVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 202 P-yGs~~~fld~A~~~l~~gGlL~vTa 227 (581)
. ......+++.+.+.|++||.|+++.
T Consensus 96 ~~~~~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 96 GSGGLLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred CcchhHHHHHHHHHHHcCCCCEEEEEe
Confidence 5 3333578899999999999999873
No 34
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=99.07 E-value=3e-10 Score=121.03 Aligned_cols=95 Identities=25% Similarity=0.341 Sum_probs=69.0
Q ss_pred eEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhh-------------
Q 047386 124 RVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLT------------- 190 (581)
Q Consensus 124 ~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~------------- 190 (581)
+|||+|||+|.+||..|. .+++|+++|+++.|++.+++|+++|+++ ++++++++|..++..
T Consensus 199 ~vlDlycG~G~fsl~la~---~~~~V~gvE~~~~av~~A~~Na~~N~i~---n~~f~~~~~~~~~~~~~~~r~~~~~~~~ 272 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLAK---KAKKVIGVEIVEEAVEDARENAKLNGID---NVEFIRGDAEDFAKALAKAREFNRLKGI 272 (352)
T ss_dssp EEEEES-TTTCCHHHHHC---CSSEEEEEES-HHHHHHHHHHHHHTT-----SEEEEE--SHHCCCHHCCS-GGTTGGGS
T ss_pred cEEEEeecCCHHHHHHHh---hCCeEEEeeCCHHHHHHHHHHHHHcCCC---cceEEEeeccchhHHHHhhHHHHhhhhh
Confidence 799999999999999998 5789999999999999999999999995 799999988765321
Q ss_pred --CCCcccEEeeCCC--CCChHhHHHHHHhccCCCeEEEEe
Q 047386 191 --HPKEFDVVDLDPY--GSPSVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 191 --~~~~fDvIdLDPy--Gs~~~fld~A~~~l~~gGlL~vTa 227 (581)
....+|+|++||| |....+++.+ +-+ .-++||+|
T Consensus 273 ~~~~~~~d~vilDPPR~G~~~~~~~~~-~~~--~~ivYvSC 310 (352)
T PF05958_consen 273 DLKSFKFDAVILDPPRAGLDEKVIELI-KKL--KRIVYVSC 310 (352)
T ss_dssp -GGCTTESEEEE---TT-SCHHHHHHH-HHS--SEEEEEES
T ss_pred hhhhcCCCEEEEcCCCCCchHHHHHHH-hcC--CeEEEEEC
Confidence 0126899999998 4444566643 334 46999997
No 35
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.07 E-value=1.2e-09 Score=119.37 Aligned_cols=104 Identities=20% Similarity=0.280 Sum_probs=85.2
Q ss_pred CCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEee
Q 047386 121 KPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDL 200 (581)
Q Consensus 121 ~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdL 200 (581)
.+.+|||++||+|..++.++....+...|+++|+|+..++.+++|++..|+. ++++.++|+..+.......||.|++
T Consensus 237 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~---~v~~~~~Da~~l~~~~~~~fD~Vl~ 313 (431)
T PRK14903 237 PGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLS---SIEIKIADAERLTEYVQDTFDRILV 313 (431)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCC---eEEEEECchhhhhhhhhccCCEEEE
Confidence 4679999999999999999876545568999999999999999999999984 5899999998764222457999999
Q ss_pred CCCCCC--------------------------hHhHHHHHHhccCCCeEEEEe
Q 047386 201 DPYGSP--------------------------SVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 201 DPyGs~--------------------------~~fld~A~~~l~~gGlL~vTa 227 (581)
||+-|. ...|+.|.+.|++||.|.++.
T Consensus 314 DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsT 366 (431)
T PRK14903 314 DAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYST 366 (431)
T ss_pred CCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 985321 134778899999999987755
No 36
>PLN02476 O-methyltransferase
Probab=99.05 E-value=1.3e-09 Score=112.75 Aligned_cols=104 Identities=21% Similarity=0.251 Sum_probs=90.2
Q ss_pred CCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhC-----CCcc
Q 047386 121 KPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTH-----PKEF 195 (581)
Q Consensus 121 ~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~-----~~~f 195 (581)
.+.+|||+.+++|..+|.+|+-++.-.+|+.+|.+++..+.+++|++.+|+. ++|+++.+||...|... ...|
T Consensus 118 ~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~--~~I~li~GdA~e~L~~l~~~~~~~~F 195 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVS--HKVNVKHGLAAESLKSMIQNGEGSSY 195 (278)
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC--CcEEEEEcCHHHHHHHHHhcccCCCC
Confidence 5679999999999999999986554457999999999999999999999996 68999999999988642 2579
Q ss_pred cEEeeCCC-CCChHhHHHHHHhccCCCeEEEE
Q 047386 196 DVVDLDPY-GSPSVFLDSAIQSVADGGMLMCT 226 (581)
Q Consensus 196 DvIdLDPy-Gs~~~fld~A~~~l~~gGlL~vT 226 (581)
|+||+|+. +.-..+++.++++|++||+|.+-
T Consensus 196 D~VFIDa~K~~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 196 DFAFVDADKRMYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred CEEEECCCHHHHHHHHHHHHHhcCCCcEEEEe
Confidence 99999985 22457889999999999999885
No 37
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.05 E-value=1.3e-09 Score=110.76 Aligned_cols=103 Identities=21% Similarity=0.349 Sum_probs=87.8
Q ss_pred CCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCC-CcccEEee
Q 047386 122 PPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHP-KEFDVVDL 200 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~-~~fDvIdL 200 (581)
..+|||+.||+|+.||-.|+.... .+|+++|+++.+++.+++|+++|+++ ++++++++|...+..... ..||+|+.
T Consensus 45 ~~~IlDlGaG~G~l~L~la~r~~~-a~I~~VEiq~~~a~~A~~nv~ln~l~--~ri~v~~~Di~~~~~~~~~~~fD~Ii~ 121 (248)
T COG4123 45 KGRILDLGAGNGALGLLLAQRTEK-AKIVGVEIQEEAAEMAQRNVALNPLE--ERIQVIEADIKEFLKALVFASFDLIIC 121 (248)
T ss_pred CCeEEEecCCcCHHHHHHhccCCC-CcEEEEEeCHHHHHHHHHHHHhCcch--hceeEehhhHHHhhhcccccccCEEEe
Confidence 568999999999999999996443 67999999999999999999999997 799999999999986544 45999999
Q ss_pred CCC----CCC---h---------------HhHHHHHHhccCCCeEEEEe
Q 047386 201 DPY----GSP---S---------------VFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 201 DPy----Gs~---~---------------~fld~A~~~l~~gGlL~vTa 227 (581)
.|+ +.. . .++..|-++|++||.|++-+
T Consensus 122 NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~ 170 (248)
T COG4123 122 NPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVH 170 (248)
T ss_pred CCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEe
Confidence 993 221 0 56677889999999999864
No 38
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.05 E-value=1.9e-09 Score=104.71 Aligned_cols=100 Identities=20% Similarity=0.254 Sum_probs=84.7
Q ss_pred CCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEee
Q 047386 121 KPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDL 200 (581)
Q Consensus 121 ~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdL 200 (581)
.+.+|||+-||||..++.++.. ....+|+++|.|+.+++.+++|++.++++ +++++++|+..+. ....||+|+.
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~-~~~~~V~~iD~s~~~~~~a~~~~~~~~~~---~i~~i~~d~~~~~--~~~~fD~I~s 115 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIA-RPELKLTLLESNHKKVAFLREVKAELGLN---NVEIVNGRAEDFQ--HEEQFDVITS 115 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHH-CCCCeEEEEeCcHHHHHHHHHHHHHhCCC---CeEEEecchhhcc--ccCCccEEEe
Confidence 4678999999999999998864 23467999999999999999999999874 5899999998863 2458999999
Q ss_pred CCCCCChHhHHHHHHhccCCCeEEEE
Q 047386 201 DPYGSPSVFLDSAIQSVADGGMLMCT 226 (581)
Q Consensus 201 DPyGs~~~fld~A~~~l~~gGlL~vT 226 (581)
+.+.....++..+.+.|++||.|++.
T Consensus 116 ~~~~~~~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 116 RALASLNVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred hhhhCHHHHHHHHHHhcCCCCEEEEE
Confidence 98655556778888999999999986
No 39
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.05 E-value=1.4e-09 Score=118.74 Aligned_cols=103 Identities=22% Similarity=0.253 Sum_probs=84.6
Q ss_pred CCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhh---CCCcccE
Q 047386 121 KPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLT---HPKEFDV 197 (581)
Q Consensus 121 ~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~---~~~~fDv 197 (581)
.+.+|||++||+|..++.++....+..+|+++|+++..++.+++|++.+|+. +++++++|+..+... ....||+
T Consensus 252 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~---~v~~~~~D~~~~~~~~~~~~~~fD~ 328 (434)
T PRK14901 252 PGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLK---SIKILAADSRNLLELKPQWRGYFDR 328 (434)
T ss_pred CcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC---eEEEEeCChhhcccccccccccCCE
Confidence 4679999999999999999886555568999999999999999999999985 589999999876421 1357999
Q ss_pred EeeCCCCCC--------------------------hHhHHHHHHhccCCCeEEEE
Q 047386 198 VDLDPYGSP--------------------------SVFLDSAIQSVADGGMLMCT 226 (581)
Q Consensus 198 IdLDPyGs~--------------------------~~fld~A~~~l~~gGlL~vT 226 (581)
|++||+-|. ..+|+.|.+.|++||.|++.
T Consensus 329 Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvys 383 (434)
T PRK14901 329 ILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYA 383 (434)
T ss_pred EEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 999986321 24578899999999976553
No 40
>PRK14967 putative methyltransferase; Provisional
Probab=99.04 E-value=1.7e-09 Score=107.59 Aligned_cols=98 Identities=31% Similarity=0.380 Sum_probs=81.2
Q ss_pred CCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEeeC
Q 047386 122 PPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDLD 201 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdLD 201 (581)
+.+|||+.||+|.+++.+++. |+.+|+++|+|+.+++.+++|++.+++ +++++++|+...+. ...||+|++|
T Consensus 37 ~~~vLDlGcG~G~~~~~la~~--~~~~v~~vD~s~~~l~~a~~n~~~~~~----~~~~~~~d~~~~~~--~~~fD~Vi~n 108 (223)
T PRK14967 37 GRRVLDLCTGSGALAVAAAAA--GAGSVTAVDISRRAVRSARLNALLAGV----DVDVRRGDWARAVE--FRPFDVVVSN 108 (223)
T ss_pred CCeEEEecCCHHHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHHhCC----eeEEEECchhhhcc--CCCeeEEEEC
Confidence 458999999999999999984 667999999999999999999999986 37889999877653 3579999999
Q ss_pred C-CCCC------------------------hHhHHHHHHhccCCCeEEEEe
Q 047386 202 P-YGSP------------------------SVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 202 P-yGs~------------------------~~fld~A~~~l~~gGlL~vTa 227 (581)
| |... ..|++.+.+.|++||.|++..
T Consensus 109 pPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~ 159 (223)
T PRK14967 109 PPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQ 159 (223)
T ss_pred CCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 7 4321 125677889999999998754
No 41
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.03 E-value=1.9e-09 Score=118.13 Aligned_cols=103 Identities=24% Similarity=0.287 Sum_probs=85.7
Q ss_pred CCCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEe
Q 047386 120 LKPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVD 199 (581)
Q Consensus 120 ~~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvId 199 (581)
..+.+|||++||+|..++.++...++...|+++|+|+..++.+++|++.+|+. +++++++|+..+.. ...||+|+
T Consensus 249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~---~v~~~~~Da~~~~~--~~~fD~Vl 323 (445)
T PRK14904 249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGIT---IIETIEGDARSFSP--EEQPDAIL 323 (445)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCC---eEEEEeCccccccc--CCCCCEEE
Confidence 35679999999999999988875544568999999999999999999999984 68999999987753 35799999
Q ss_pred eCCCCCC--------------------------hHhHHHHHHhccCCCeEEEEe
Q 047386 200 LDPYGSP--------------------------SVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 200 LDPyGs~--------------------------~~fld~A~~~l~~gGlL~vTa 227 (581)
+||+-+. ..+|..|.++|++||.|++..
T Consensus 324 ~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvyst 377 (445)
T PRK14904 324 LDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYAT 377 (445)
T ss_pred EcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 9986321 136788899999999998865
No 42
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.01 E-value=2.4e-09 Score=116.78 Aligned_cols=102 Identities=30% Similarity=0.312 Sum_probs=83.6
Q ss_pred CCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhh-CCCcccEEe
Q 047386 121 KPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLT-HPKEFDVVD 199 (581)
Q Consensus 121 ~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~-~~~~fDvId 199 (581)
++.+|||++||+|..++.++...++ ..|+++|+|+.+++.+++|++.+|+. ++++++|+..+... ....||+|+
T Consensus 244 ~g~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~s~~~l~~~~~n~~~~g~~----~~~~~~D~~~~~~~~~~~~fD~Vl 318 (427)
T PRK10901 244 NGERVLDACAAPGGKTAHILELAPQ-AQVVALDIDAQRLERVRENLQRLGLK----ATVIVGDARDPAQWWDGQPFDRIL 318 (427)
T ss_pred CCCEEEEeCCCCChHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHHcCCC----eEEEEcCcccchhhcccCCCCEEE
Confidence 5679999999999999999986544 68999999999999999999999974 57899999765321 135799999
Q ss_pred eCCCCCC--------------------------hHhHHHHHHhccCCCeEEEEe
Q 047386 200 LDPYGSP--------------------------SVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 200 LDPyGs~--------------------------~~fld~A~~~l~~gGlL~vTa 227 (581)
+||+-+. ..+++.|.+.|++||.|+++.
T Consensus 319 ~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvyst 372 (427)
T PRK10901 319 LDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYAT 372 (427)
T ss_pred ECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 9995321 146888999999999988765
No 43
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.01 E-value=4.4e-09 Score=102.37 Aligned_cols=102 Identities=22% Similarity=0.201 Sum_probs=84.4
Q ss_pred CCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEeeC
Q 047386 122 PPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDLD 201 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdLD 201 (581)
+.+|||+.||||.+++.++...++ .+|+++|+|+.+++.+++|++.+++. +++++++|+...+......+|.|++|
T Consensus 41 ~~~VLDiG~G~G~~~~~la~~~~~-~~V~~vD~s~~~~~~a~~n~~~~~~~---~v~~~~~d~~~~~~~~~~~~d~v~~~ 116 (196)
T PRK07402 41 DSVLWDIGAGTGTIPVEAGLLCPK-GRVIAIERDEEVVNLIRRNCDRFGVK---NVEVIEGSAPECLAQLAPAPDRVCIE 116 (196)
T ss_pred CCEEEEeCCCCCHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHhCCC---CeEEEECchHHHHhhCCCCCCEEEEE
Confidence 568999999999999999865444 68999999999999999999999874 68999999977654333457999998
Q ss_pred CCCCChHhHHHHHHhccCCCeEEEEe
Q 047386 202 PYGSPSVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 202 PyGs~~~fld~A~~~l~~gGlL~vTa 227 (581)
.......++..+.+.|++||.|++.+
T Consensus 117 ~~~~~~~~l~~~~~~LkpgG~li~~~ 142 (196)
T PRK07402 117 GGRPIKEILQAVWQYLKPGGRLVATA 142 (196)
T ss_pred CCcCHHHHHHHHHHhcCCCeEEEEEe
Confidence 64333578888889999999998875
No 44
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.99 E-value=3.9e-09 Score=110.63 Aligned_cols=100 Identities=21% Similarity=0.297 Sum_probs=83.0
Q ss_pred CeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEeeCC
Q 047386 123 PRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDLDP 202 (581)
Q Consensus 123 ~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdLDP 202 (581)
.+|||+.||||.+++.++++.++ ..|+++|+|+.|++.+++|++.|++. ++++++++|+...+. ...||+|+.||
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~-~~V~avDis~~al~~A~~n~~~~~l~--~~i~~~~~D~~~~l~--~~~fDlIvsNP 209 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPD-AEVDAVDISPDALAVAEINIERHGLE--DRVTLIESDLFAALP--GRRYDLIVSNP 209 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHhCCC--CcEEEEECchhhhCC--CCCccEEEECC
Confidence 58999999999999999987543 57999999999999999999999985 579999999877653 34799999998
Q ss_pred -CCCC----------------------------hHhHHHHHHhccCCCeEEEEe
Q 047386 203 -YGSP----------------------------SVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 203 -yGs~----------------------------~~fld~A~~~l~~gGlL~vTa 227 (581)
|... ..++..+.+.|++||.|+++.
T Consensus 210 Pyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~ 263 (307)
T PRK11805 210 PYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEV 263 (307)
T ss_pred CCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 4211 134566778999999999974
No 45
>PRK00811 spermidine synthase; Provisional
Probab=98.94 E-value=1.6e-08 Score=104.65 Aligned_cols=105 Identities=20% Similarity=0.382 Sum_probs=85.9
Q ss_pred CCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhC--CCCCCcEEEEehhHHHHHhhCCCcccEEe
Q 047386 122 PPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNG--SVACSKVESHLADARVYMLTHPKEFDVVD 199 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~--~~~~~~v~v~~~DA~~~l~~~~~~fDvId 199 (581)
+.+||++.+|+|..+.++++. +++.+|+++|+|+..++.+++++...+ .....+++++.+|+..++.....+||+|+
T Consensus 77 p~~VL~iG~G~G~~~~~~l~~-~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 155 (283)
T PRK00811 77 PKRVLIIGGGDGGTLREVLKH-PSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVII 155 (283)
T ss_pred CCEEEEEecCchHHHHHHHcC-CCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEE
Confidence 568999999999999999885 578999999999999999999986432 21125799999999999976567899999
Q ss_pred eC---CCCCC-----hHhHHHHHHhccCCCeEEEEe
Q 047386 200 LD---PYGSP-----SVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 200 LD---PyGs~-----~~fld~A~~~l~~gGlL~vTa 227 (581)
+| |++.+ ..|+..+.+.|++||++++.+
T Consensus 156 ~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 156 VDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred ECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 97 44433 467777889999999998753
No 46
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.94 E-value=5.7e-09 Score=107.77 Aligned_cols=100 Identities=21% Similarity=0.284 Sum_probs=82.1
Q ss_pred CeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEeeCC
Q 047386 123 PRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDLDP 202 (581)
Q Consensus 123 ~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdLDP 202 (581)
.+|||+.||||.+++.++.+.++ .+|+++|+|+.|++.+++|++.|++. ++++++++|+...+. ..+||+|+.+|
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~-~~v~avDis~~al~~a~~n~~~~~~~--~~v~~~~~d~~~~~~--~~~fDlIvsNP 190 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPN-AEVIAVDISPDALAVAEENAEKNQLE--HRVEFIQSNLFEPLA--GQKIDIIVSNP 190 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCCC--CcEEEEECchhccCc--CCCccEEEECC
Confidence 58999999999999999997554 47999999999999999999999985 569999999876553 23799999998
Q ss_pred -CCCCh----------------------------HhHHHHHHhccCCCeEEEEe
Q 047386 203 -YGSPS----------------------------VFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 203 -yGs~~----------------------------~fld~A~~~l~~gGlL~vTa 227 (581)
|-... .++..|.+.|++||+|+++.
T Consensus 191 Pyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~ 244 (284)
T TIGR00536 191 PYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEI 244 (284)
T ss_pred CCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 42211 24556778899999999985
No 47
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.93 E-value=5.5e-09 Score=110.08 Aligned_cols=100 Identities=22% Similarity=0.304 Sum_probs=82.2
Q ss_pred CCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEee
Q 047386 121 KPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDL 200 (581)
Q Consensus 121 ~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdL 200 (581)
.+.+|||+|||||.+.++++.. | ..|+++|+|+.+++.++.|++.+++. .+.+.++|+..+-. ....||+|..
T Consensus 182 ~g~~vLDp~cGtG~~lieaa~~--~-~~v~g~Di~~~~~~~a~~nl~~~g~~---~i~~~~~D~~~l~~-~~~~~D~Iv~ 254 (329)
T TIGR01177 182 EGDRVLDPFCGTGGFLIEAGLM--G-AKVIGCDIDWKMVAGARINLEHYGIE---DFFVKRGDATKLPL-SSESVDAIAT 254 (329)
T ss_pred CcCEEEECCCCCCHHHHHHHHh--C-CeEEEEcCCHHHHHHHHHHHHHhCCC---CCeEEecchhcCCc-ccCCCCEEEE
Confidence 3568999999999999998873 4 47999999999999999999999986 37899999987532 2458999999
Q ss_pred CC-CCCC------------hHhHHHHHHhccCCCeEEEEe
Q 047386 201 DP-YGSP------------SVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 201 DP-yGs~------------~~fld~A~~~l~~gGlL~vTa 227 (581)
|| ||.. ..++..+.+.|++||.+++..
T Consensus 255 dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~ 294 (329)
T TIGR01177 255 DPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAV 294 (329)
T ss_pred CCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEE
Confidence 97 6541 246777888999999887764
No 48
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=98.91 E-value=1.2e-08 Score=98.43 Aligned_cols=99 Identities=16% Similarity=0.251 Sum_probs=82.5
Q ss_pred CCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEeeC
Q 047386 122 PPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDLD 201 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdLD 201 (581)
+.+|||+.||||..++.+++..+ ..+|+++|+|+.+++.+++|++.+++. +++++++|+...+ ...||+|+++
T Consensus 32 ~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~n~~~~~~~---~i~~~~~d~~~~~---~~~~D~v~~~ 104 (187)
T PRK08287 32 AKHLIDVGAGTGSVSIEAALQFP-SLQVTAIERNPDALRLIKENRQRFGCG---NIDIIPGEAPIEL---PGKADAIFIG 104 (187)
T ss_pred CCEEEEECCcCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhCCC---CeEEEecCchhhc---CcCCCEEEEC
Confidence 56899999999999999998643 368999999999999999999999874 5899999985433 3579999998
Q ss_pred CC-CCChHhHHHHHHhccCCCeEEEEe
Q 047386 202 PY-GSPSVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 202 Py-Gs~~~fld~A~~~l~~gGlL~vTa 227 (581)
-. +....+++.+.+.|++||.|++..
T Consensus 105 ~~~~~~~~~l~~~~~~Lk~gG~lv~~~ 131 (187)
T PRK08287 105 GSGGNLTAIIDWSLAHLHPGGRLVLTF 131 (187)
T ss_pred CCccCHHHHHHHHHHhcCCCeEEEEEE
Confidence 63 334568888999999999998853
No 49
>PRK04457 spermidine synthase; Provisional
Probab=98.91 E-value=9.3e-09 Score=105.41 Aligned_cols=103 Identities=17% Similarity=0.269 Sum_probs=88.0
Q ss_pred CCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEeeC
Q 047386 122 PPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDLD 201 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdLD 201 (581)
+.+|||+-+|+|..+..++...++ .+|+++|+|+..++.+++++..++.. .+++++.+|+..++.....+||+|++|
T Consensus 67 ~~~vL~IG~G~G~l~~~l~~~~p~-~~v~~VEidp~vi~~A~~~f~~~~~~--~rv~v~~~Da~~~l~~~~~~yD~I~~D 143 (262)
T PRK04457 67 PQHILQIGLGGGSLAKFIYTYLPD-TRQTAVEINPQVIAVARNHFELPENG--ERFEVIEADGAEYIAVHRHSTDVILVD 143 (262)
T ss_pred CCEEEEECCCHhHHHHHHHHhCCC-CeEEEEECCHHHHHHHHHHcCCCCCC--CceEEEECCHHHHHHhCCCCCCEEEEe
Confidence 458999999999999988876544 57999999999999999998876543 579999999999997666789999999
Q ss_pred CCCCC--------hHhHHHHHHhccCCCeEEEEe
Q 047386 202 PYGSP--------SVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 202 PyGs~--------~~fld~A~~~l~~gGlL~vTa 227 (581)
.|... ..|+..+.+.|++||+|.+..
T Consensus 144 ~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~ 177 (262)
T PRK04457 144 GFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNL 177 (262)
T ss_pred CCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEc
Confidence 87432 588999999999999999963
No 50
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.91 E-value=1e-08 Score=99.45 Aligned_cols=102 Identities=23% Similarity=0.256 Sum_probs=75.0
Q ss_pred CCeEEEecCcccHHHHHHhhhcCCcc--------EEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCC
Q 047386 122 PPRVLEALSASGLRALRYAREVEGIG--------QVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPK 193 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~~Ga~--------~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~ 193 (581)
+..|||.|||||.+-|+++....++. .+++.|+|+.+++.+++|++..++. +.+.+.+.|++.+- ....
T Consensus 29 ~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~--~~i~~~~~D~~~l~-~~~~ 105 (179)
T PF01170_consen 29 GDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVE--DYIDFIQWDARELP-LPDG 105 (179)
T ss_dssp TS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-C--GGEEEEE--GGGGG-GTTS
T ss_pred CCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccC--CceEEEecchhhcc-cccC
Confidence 45899999999999999988755554 4899999999999999999999986 67999999998876 2245
Q ss_pred cccEEeeCC-CCCCh-----------HhHHHHHHhccCCCeEEEEe
Q 047386 194 EFDVVDLDP-YGSPS-----------VFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 194 ~fDvIdLDP-yGs~~-----------~fld~A~~~l~~gGlL~vTa 227 (581)
.+|+|+.|| ||.-. .|++.+.+.+++ ..+++++
T Consensus 106 ~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~ 150 (179)
T PF01170_consen 106 SVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLTT 150 (179)
T ss_dssp BSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEE
T ss_pred CCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEE
Confidence 899999998 88632 234444455555 6666665
No 51
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.91 E-value=7.3e-09 Score=111.46 Aligned_cols=102 Identities=20% Similarity=0.233 Sum_probs=83.0
Q ss_pred CeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEeeCC
Q 047386 123 PRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDLDP 202 (581)
Q Consensus 123 ~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdLDP 202 (581)
.+|||+.||+|+.|+.+++..++ .+|+++|+|+.|++++++|++.|+.....++++..+|+...+. ..+||+|+.+|
T Consensus 230 ~~VLDLGCGtGvi~i~la~~~P~-~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~--~~~fDlIlsNP 306 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLDKNPQ-AKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVE--PFRFNAVLCNP 306 (378)
T ss_pred CeEEEEeccccHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCC--CCCEEEEEECc
Confidence 48999999999999999987544 5799999999999999999999986422368899999865442 34799999998
Q ss_pred -CCC--------ChHhHHHHHHhccCCCeEEEEe
Q 047386 203 -YGS--------PSVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 203 -yGs--------~~~fld~A~~~l~~gGlL~vTa 227 (581)
|.. ...++..|.+.|++||.|++..
T Consensus 307 Pfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 307 PFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred CcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 421 1256777889999999999874
No 52
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=98.90 E-value=6.3e-09 Score=96.95 Aligned_cols=102 Identities=18% Similarity=0.302 Sum_probs=84.4
Q ss_pred CCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhC-CCcccEEee
Q 047386 122 PPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTH-PKEFDVVDL 200 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~-~~~fDvIdL 200 (581)
+.+|||+.||+|..++.++.++....+|+++|+|+.+++.++++++.++++ +++++++|+.. +... ...||+|+.
T Consensus 4 ~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~---ni~~~~~d~~~-l~~~~~~~~D~I~~ 79 (152)
T PF13847_consen 4 NKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD---NIEFIQGDIED-LPQELEEKFDIIIS 79 (152)
T ss_dssp TSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST---TEEEEESBTTC-GCGCSSTTEEEEEE
T ss_pred CCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc---ccceEEeehhc-cccccCCCeeEEEE
Confidence 568999999999999999965444567999999999999999999999984 79999999998 5432 268999999
Q ss_pred CCC----CCChHhHHHHHHhccCCCeEEEEe
Q 047386 201 DPY----GSPSVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 201 DPy----Gs~~~fld~A~~~l~~gGlL~vTa 227 (581)
++. ..+..++..+.++|++||++++..
T Consensus 80 ~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~ 110 (152)
T PF13847_consen 80 NGVLHHFPDPEKVLKNIIRLLKPGGILIISD 110 (152)
T ss_dssp ESTGGGTSHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCchhhccCHHHHHHHHHHHcCCCcEEEEEE
Confidence 862 223457888899999999999875
No 53
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.90 E-value=1.6e-08 Score=105.42 Aligned_cols=101 Identities=26% Similarity=0.252 Sum_probs=77.3
Q ss_pred CCCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEe
Q 047386 120 LKPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVD 199 (581)
Q Consensus 120 ~~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvId 199 (581)
.++.+|||+-||||++||-+++- ||++|+++|+||.|++..++|+++|++.. .+..-..+...... ..+||+|+
T Consensus 161 ~~g~~vlDvGcGSGILaIAa~kL--GA~~v~g~DiDp~AV~aa~eNa~~N~v~~--~~~~~~~~~~~~~~--~~~~DvIV 234 (300)
T COG2264 161 KKGKTVLDVGCGSGILAIAAAKL--GAKKVVGVDIDPQAVEAARENARLNGVEL--LVQAKGFLLLEVPE--NGPFDVIV 234 (300)
T ss_pred cCCCEEEEecCChhHHHHHHHHc--CCceEEEecCCHHHHHHHHHHHHHcCCch--hhhcccccchhhcc--cCcccEEE
Confidence 36889999999999999999994 99999999999999999999999999962 22222222222222 25899997
Q ss_pred eCCCCCC-hHhHHHHHHhccCCCeEEEE
Q 047386 200 LDPYGSP-SVFLDSAIQSVADGGMLMCT 226 (581)
Q Consensus 200 LDPyGs~-~~fld~A~~~l~~gGlL~vT 226 (581)
..=...+ ..+.....+.+++||+|+++
T Consensus 235 ANILA~vl~~La~~~~~~lkpgg~lIlS 262 (300)
T COG2264 235 ANILAEVLVELAPDIKRLLKPGGRLILS 262 (300)
T ss_pred ehhhHHHHHHHHHHHHHHcCCCceEEEE
Confidence 6543221 24556677899999999987
No 54
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=98.89 E-value=1.2e-08 Score=99.72 Aligned_cols=100 Identities=20% Similarity=0.181 Sum_probs=87.2
Q ss_pred CCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEeeC
Q 047386 122 PPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDLD 201 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdLD 201 (581)
+.+|||+-||+|..++.++...+ ..+|+++|+|+.+++.+++|++.++++ +++++++|+..+.. ...||+|+.+
T Consensus 46 g~~VLDiGcGtG~~al~la~~~~-~~~V~giD~s~~~l~~A~~~~~~~~l~---~i~~~~~d~~~~~~--~~~fDlV~~~ 119 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIARP-ELKVTLVDSLGKKIAFLREVAAELGLK---NVTVVHGRAEEFGQ--EEKFDVVTSR 119 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHcCCC---CEEEEeccHhhCCC--CCCccEEEEc
Confidence 56899999999999999987644 458999999999999999999999985 49999999987543 4689999998
Q ss_pred CCCCChHhHHHHHHhccCCCeEEEEe
Q 047386 202 PYGSPSVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 202 PyGs~~~fld~A~~~l~~gGlL~vTa 227 (581)
-++....++..+.+.|++||.|++-.
T Consensus 120 ~~~~~~~~l~~~~~~LkpGG~lv~~~ 145 (187)
T PRK00107 120 AVASLSDLVELCLPLLKPGGRFLALK 145 (187)
T ss_pred cccCHHHHHHHHHHhcCCCeEEEEEe
Confidence 87666788999999999999998863
No 55
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.88 E-value=1.4e-08 Score=112.10 Aligned_cols=104 Identities=29% Similarity=0.429 Sum_probs=87.6
Q ss_pred CCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEee
Q 047386 121 KPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDL 200 (581)
Q Consensus 121 ~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdL 200 (581)
.+.+|||++||.|+-++.+|..+.+-..|++||+++.-++.+++|++..|+. ++.+.+.|+..+.......||.|.+
T Consensus 113 pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~---nv~v~~~D~~~~~~~~~~~fD~ILv 189 (470)
T PRK11933 113 APQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVS---NVALTHFDGRVFGAALPETFDAILL 189 (470)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC---eEEEEeCchhhhhhhchhhcCeEEE
Confidence 5679999999999999999987655568999999999999999999999984 6899999998765433467999999
Q ss_pred CCCCC--------C------------------hHhHHHHHHhccCCCeEEEEe
Q 047386 201 DPYGS--------P------------------SVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 201 DPyGs--------~------------------~~fld~A~~~l~~gGlL~vTa 227 (581)
|++-| | ..+|+.|.++|++||.|+.+.
T Consensus 190 DaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYST 242 (470)
T PRK11933 190 DAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYST 242 (470)
T ss_pred cCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEC
Confidence 99844 1 156788999999999986654
No 56
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=98.88 E-value=1.4e-08 Score=97.32 Aligned_cols=97 Identities=28% Similarity=0.402 Sum_probs=79.7
Q ss_pred CCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEee
Q 047386 121 KPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDL 200 (581)
Q Consensus 121 ~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdL 200 (581)
.+.+|||+.||+|..++.++.. +. +|+++|+|+.+++.+++|++.|++ ++++.++|+.... ...||+|+.
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~--~~-~v~~vD~s~~~~~~a~~~~~~~~~----~~~~~~~d~~~~~---~~~fD~Vi~ 88 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGK--GK-CILTTDINPFAVKELRENAKLNNV----GLDVVMTDLFKGV---RGKFDVILF 88 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhc--CC-EEEEEECCHHHHHHHHHHHHHcCC----ceEEEEccccccc---CCcccEEEE
Confidence 3568999999999999999984 55 899999999999999999999986 3788999987654 247999999
Q ss_pred CC-CCCC------------------------hHhHHHHHHhccCCCeEEEEe
Q 047386 201 DP-YGSP------------------------SVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 201 DP-yGs~------------------------~~fld~A~~~l~~gGlL~vTa 227 (581)
+| |... ..|+..+.+.|++||.+++..
T Consensus 89 n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~ 140 (179)
T TIGR00537 89 NPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQ 140 (179)
T ss_pred CCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEE
Confidence 97 4211 136777889999999988753
No 57
>PRK10742 putative methyltransferase; Provisional
Probab=98.88 E-value=7.3e-09 Score=105.31 Aligned_cols=77 Identities=19% Similarity=0.205 Sum_probs=67.2
Q ss_pred eEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHh------CCCCCCcEEEEehhHHHHHhhCCCcccE
Q 047386 124 RVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFN------GSVACSKVESHLADARVYMLTHPKEFDV 197 (581)
Q Consensus 124 ~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N------~~~~~~~v~v~~~DA~~~l~~~~~~fDv 197 (581)
+|||+++|+|.-|+.+++ +|++ |+++|.|+.+..++++|++.. +..-..+++++++|+..+|......|||
T Consensus 91 ~VLD~TAGlG~Da~~las--~G~~-V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~~fDV 167 (250)
T PRK10742 91 DVVDATAGLGRDAFVLAS--VGCR-VRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQV 167 (250)
T ss_pred EEEECCCCccHHHHHHHH--cCCE-EEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCCCCcE
Confidence 899999999999999999 5887 999999999999999999984 2100146899999999999876668999
Q ss_pred EeeCC-C
Q 047386 198 VDLDP-Y 203 (581)
Q Consensus 198 IdLDP-y 203 (581)
|++|| |
T Consensus 168 VYlDPMf 174 (250)
T PRK10742 168 VYLDPMF 174 (250)
T ss_pred EEECCCC
Confidence 99999 5
No 58
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.88 E-value=1.1e-08 Score=111.40 Aligned_cols=104 Identities=27% Similarity=0.288 Sum_probs=82.1
Q ss_pred CCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHh-hCCCcccEEe
Q 047386 121 KPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYML-THPKEFDVVD 199 (581)
Q Consensus 121 ~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~-~~~~~fDvId 199 (581)
.+.+|||++||+|..++.++...+ ..+|+++|+|+..++.+++|++.+|+. ..+.+..+|+..... .....||+|+
T Consensus 238 ~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~--~~v~~~~~d~~~~~~~~~~~~fD~Vl 314 (426)
T TIGR00563 238 NEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLT--IKAETKDGDGRGPSQWAENEQFDRIL 314 (426)
T ss_pred CCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEeccccccccccccccccCEEE
Confidence 467999999999999999998654 458999999999999999999999985 345557777754321 0135799999
Q ss_pred eCCCCCC--------------------------hHhHHHHHHhccCCCeEEEEe
Q 047386 200 LDPYGSP--------------------------SVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 200 LDPyGs~--------------------------~~fld~A~~~l~~gGlL~vTa 227 (581)
+||+-|. ..+|+.|.+.|++||.|.++.
T Consensus 315 lDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvyst 368 (426)
T TIGR00563 315 LDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYAT 368 (426)
T ss_pred EcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 9985321 247888999999999987754
No 59
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.87 E-value=7.6e-09 Score=99.28 Aligned_cols=78 Identities=29% Similarity=0.455 Sum_probs=60.5
Q ss_pred eEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCC--CcccEEeeC
Q 047386 124 RVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHP--KEFDVVDLD 201 (581)
Q Consensus 124 ~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~--~~fDvIdLD 201 (581)
.|||+|||.|+-.|.+|+. ..+|+++|+|+.-++.++.|++.-|+. ++|+++++|++.++.... ..||+|++|
T Consensus 2 ~vlD~fcG~GGNtIqFA~~---~~~Viaidid~~~~~~a~hNa~vYGv~--~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFART---FDRVIAIDIDPERLECAKHNAEVYGVA--DNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHHT---T-EEEEEES-HHHHHHHHHHHHHTT-G--GGEEEEES-HHHHGGGB------SEEEE-
T ss_pred EEEEeccCcCHHHHHHHHh---CCeEEEEECCHHHHHHHHHHHHHcCCC--CcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 6999999999999999995 578999999999999999999999986 799999999999987642 228999999
Q ss_pred CC-CCC
Q 047386 202 PY-GSP 206 (581)
Q Consensus 202 Py-Gs~ 206 (581)
|+ |-|
T Consensus 77 PPWGGp 82 (163)
T PF09445_consen 77 PPWGGP 82 (163)
T ss_dssp --BSSG
T ss_pred CCCCCc
Confidence 95 543
No 60
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.86 E-value=1.2e-08 Score=105.77 Aligned_cols=100 Identities=21% Similarity=0.275 Sum_probs=81.1
Q ss_pred CCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEee
Q 047386 121 KPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDL 200 (581)
Q Consensus 121 ~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdL 200 (581)
.+.+|||+.||||+.++.+++ .|+.+|+++|+|+.+++.+++|+..|++. .++.+..+|.... ...+||+|+.
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~--~g~~~V~avDid~~al~~a~~n~~~n~~~--~~~~~~~~~~~~~---~~~~fDlVva 231 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALK--LGAAKVVGIDIDPLAVESARKNAELNQVS--DRLQVKLIYLEQP---IEGKADVIVA 231 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHH--cCCCeEEEEECCHHHHHHHHHHHHHcCCC--cceEEEecccccc---cCCCceEEEE
Confidence 567999999999999999887 47889999999999999999999999986 5677777763222 2458999999
Q ss_pred CCCCCC-hHhHHHHHHhccCCCeEEEEe
Q 047386 201 DPYGSP-SVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 201 DPyGs~-~~fld~A~~~l~~gGlL~vTa 227 (581)
+..... ..++..+.+.|++||+|+++.
T Consensus 232 n~~~~~l~~ll~~~~~~LkpgG~li~sg 259 (288)
T TIGR00406 232 NILAEVIKELYPQFSRLVKPGGWLILSG 259 (288)
T ss_pred ecCHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 875322 256677789999999998863
No 61
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.85 E-value=3.5e-09 Score=110.43 Aligned_cols=98 Identities=29% Similarity=0.365 Sum_probs=72.4
Q ss_pred CCCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEe
Q 047386 120 LKPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVD 199 (581)
Q Consensus 120 ~~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvId 199 (581)
..+.+|||+-||||++||-+++- ||++|+++|+||.|++..++|+++|++. +++.+.. .... ...+||+|.
T Consensus 160 ~~g~~vLDvG~GSGILaiaA~kl--GA~~v~a~DiDp~Av~~a~~N~~~N~~~--~~~~v~~--~~~~---~~~~~dlvv 230 (295)
T PF06325_consen 160 KPGKRVLDVGCGSGILAIAAAKL--GAKKVVAIDIDPLAVEAARENAELNGVE--DRIEVSL--SEDL---VEGKFDLVV 230 (295)
T ss_dssp STTSEEEEES-TTSHHHHHHHHT--TBSEEEEEESSCHHHHHHHHHHHHTT-T--TCEEESC--TSCT---CCS-EEEEE
T ss_pred cCCCEEEEeCCcHHHHHHHHHHc--CCCeEEEecCCHHHHHHHHHHHHHcCCC--eeEEEEE--eccc---ccccCCEEE
Confidence 35679999999999999999994 9999999999999999999999999997 4666531 1111 136899998
Q ss_pred eCCCCCC-hHhHHHHHHhccCCCeEEEE
Q 047386 200 LDPYGSP-SVFLDSAIQSVADGGMLMCT 226 (581)
Q Consensus 200 LDPyGs~-~~fld~A~~~l~~gGlL~vT 226 (581)
..=.... ...+....+++++||+|+++
T Consensus 231 ANI~~~vL~~l~~~~~~~l~~~G~lIlS 258 (295)
T PF06325_consen 231 ANILADVLLELAPDIASLLKPGGYLILS 258 (295)
T ss_dssp EES-HHHHHHHHHHCHHHEEEEEEEEEE
T ss_pred ECCCHHHHHHHHHHHHHhhCCCCEEEEc
Confidence 6654221 12333445789999999996
No 62
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=98.84 E-value=4.2e-08 Score=96.51 Aligned_cols=103 Identities=18% Similarity=0.227 Sum_probs=83.6
Q ss_pred CCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHh--hCCCcccEE
Q 047386 121 KPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYML--THPKEFDVV 198 (581)
Q Consensus 121 ~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~--~~~~~fDvI 198 (581)
.+.+|||+.||+|..++.++...++ ..|+++|+|+.+++.+++|++.+++. +++++++|+...+. .....||+|
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~-~~v~gVD~s~~~i~~a~~~~~~~~~~---~v~~~~~d~~~~l~~~~~~~~~D~V 115 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPD-INFIGIEVHEPGVGKALKKIEEEGLT---NLRLLCGDAVEVLLDMFPDGSLDRI 115 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCC-ccEEEEEechHHHHHHHHHHHHcCCC---CEEEEecCHHHHHHHHcCccccceE
Confidence 3568999999999999999876544 47999999999999999999999873 68999999943333 124579999
Q ss_pred ee---CCCCC---------ChHhHHHHHHhccCCCeEEEEe
Q 047386 199 DL---DPYGS---------PSVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 199 dL---DPyGs---------~~~fld~A~~~l~~gGlL~vTa 227 (581)
++ ||+.. ...|+..+.+.|++||.|++++
T Consensus 116 ~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~ 156 (202)
T PRK00121 116 YLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT 156 (202)
T ss_pred EEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc
Confidence 88 66532 2468888899999999999874
No 63
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.83 E-value=2.4e-08 Score=111.27 Aligned_cols=101 Identities=20% Similarity=0.221 Sum_probs=82.0
Q ss_pred CCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEeeC
Q 047386 122 PPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDLD 201 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdLD 201 (581)
+.+|||+.||||..++.++++.++ .+|+++|+|+.|++.+++|++.|++. +++.++++|+...+. ..+||+|+.+
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~-~~v~avDis~~al~~A~~N~~~~~l~--~~v~~~~~D~~~~~~--~~~fDlIvsN 213 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPN-ANVIATDISLDAIEVAKSNAIKYEVT--DRIQIIHSNWFENIE--KQKFDFIVSN 213 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCC-CeEEEEECCHHHHHHHHHHHHHcCCc--cceeeeecchhhhCc--CCCccEEEEC
Confidence 458999999999999999987654 47999999999999999999999986 578999999876553 3579999999
Q ss_pred C-CCCCh-----------------------------HhHHHHHHhccCCCeEEEEe
Q 047386 202 P-YGSPS-----------------------------VFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 202 P-yGs~~-----------------------------~fld~A~~~l~~gGlL~vTa 227 (581)
| |.... .++..+.+.|++||+|+++.
T Consensus 214 PPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEi 269 (506)
T PRK01544 214 PPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEI 269 (506)
T ss_pred CCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 8 43211 13345667899999999874
No 64
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.82 E-value=3.6e-08 Score=98.27 Aligned_cols=100 Identities=26% Similarity=0.293 Sum_probs=82.7
Q ss_pred CCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEeeC
Q 047386 122 PPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDLD 201 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdLD 201 (581)
+.+|||+.||+|.+++.++...++ ..|+++|+|+.+++.+++|+..+++. +++++++|+...+. ..+||+|+.+
T Consensus 88 ~~~ilDig~G~G~~~~~l~~~~~~-~~v~~iD~~~~~~~~a~~~~~~~~~~---~~~~~~~d~~~~~~--~~~fD~Vi~n 161 (251)
T TIGR03534 88 PLRVLDLGTGSGAIALALAKERPD-ARVTAVDISPEALAVARKNAARLGLD---NVTFLQSDWFEPLP--GGKFDLIVSN 161 (251)
T ss_pred CCeEEEEeCcHhHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCCC---eEEEEECchhccCc--CCceeEEEEC
Confidence 458999999999999999987544 47999999999999999999999984 68999999877542 4689999999
Q ss_pred C-CCCC-----------------------------hHhHHHHHHhccCCCeEEEEe
Q 047386 202 P-YGSP-----------------------------SVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 202 P-yGs~-----------------------------~~fld~A~~~l~~gGlL~vTa 227 (581)
| |... ..|+..+.+.|++||.+++..
T Consensus 162 pPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~ 217 (251)
T TIGR03534 162 PPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI 217 (251)
T ss_pred CCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 8 4321 135667788999999999864
No 65
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.82 E-value=5.3e-08 Score=95.03 Aligned_cols=102 Identities=23% Similarity=0.301 Sum_probs=89.9
Q ss_pred CCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEee
Q 047386 121 KPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDL 200 (581)
Q Consensus 121 ~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdL 200 (581)
++.+++|.-||||..+|+++.- .-..+|+|+|.|++|++++++|++..|+ ++++++.+||-..|.... .||.||+
T Consensus 34 ~g~~l~DIGaGtGsi~iE~a~~-~p~~~v~AIe~~~~a~~~~~~N~~~fg~---~n~~vv~g~Ap~~L~~~~-~~daiFI 108 (187)
T COG2242 34 PGDRLWDIGAGTGSITIEWALA-GPSGRVIAIERDEEALELIERNAARFGV---DNLEVVEGDAPEALPDLP-SPDAIFI 108 (187)
T ss_pred CCCEEEEeCCCccHHHHHHHHh-CCCceEEEEecCHHHHHHHHHHHHHhCC---CcEEEEeccchHhhcCCC-CCCEEEE
Confidence 4669999999999999999953 3467899999999999999999999997 489999999999997644 7999999
Q ss_pred CCCCCChHhHHHHHHhccCCCeEEEEe
Q 047386 201 DPYGSPSVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 201 DPyGs~~~fld~A~~~l~~gGlL~vTa 227 (581)
-==+.-...++.+...|++||-|.+++
T Consensus 109 GGg~~i~~ile~~~~~l~~ggrlV~na 135 (187)
T COG2242 109 GGGGNIEEILEAAWERLKPGGRLVANA 135 (187)
T ss_pred CCCCCHHHHHHHHHHHcCcCCeEEEEe
Confidence 865555678999999999999999987
No 66
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.82 E-value=2.3e-08 Score=103.67 Aligned_cols=97 Identities=27% Similarity=0.328 Sum_probs=78.7
Q ss_pred eEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEeeCCC
Q 047386 124 RVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDLDPY 203 (581)
Q Consensus 124 ~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdLDPy 203 (581)
+|||+.+|||..||..+++.+ ...|+++|+|+.|++++++|++.|++. ++.++++|.+.-+. .+||+|+..||
T Consensus 113 ~ilDlGTGSG~iai~la~~~~-~~~V~a~Dis~~Al~~A~~Na~~~~l~---~~~~~~~dlf~~~~---~~fDlIVsNPP 185 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGP-DAEVIAVDISPDALALARENAERNGLV---RVLVVQSDLFEPLR---GKFDLIVSNPP 185 (280)
T ss_pred cEEEecCChHHHHHHHHhhCc-CCeEEEEECCHHHHHHHHHHHHHcCCc---cEEEEeeecccccC---CceeEEEeCCC
Confidence 799999999999999999854 358999999999999999999999983 56666667776664 38999999984
Q ss_pred CCCh-----------------------------HhHHHHHHhccCCCeEEEEe
Q 047386 204 GSPS-----------------------------VFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 204 Gs~~-----------------------------~fld~A~~~l~~gGlL~vTa 227 (581)
.-|. .|++.+-..+++||+|.+.+
T Consensus 186 Yip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~ 238 (280)
T COG2890 186 YIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEI 238 (280)
T ss_pred CCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEE
Confidence 2221 23445667889999999986
No 67
>PRK03612 spermidine synthase; Provisional
Probab=98.80 E-value=6.9e-08 Score=108.03 Aligned_cols=104 Identities=24% Similarity=0.268 Sum_probs=85.9
Q ss_pred CCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhC-----CCCCCcEEEEehhHHHHHhhCCCccc
Q 047386 122 PPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNG-----SVACSKVESHLADARVYMLTHPKEFD 196 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~-----~~~~~~v~v~~~DA~~~l~~~~~~fD 196 (581)
+.+|||+-+|+|..+.+.++. +++.+|+++|+|++.++.+++|..++. ++ ..+++++++|++.++....++||
T Consensus 298 ~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~-dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 298 PRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALD-DPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccC-CCceEEEEChHHHHHHhCCCCCC
Confidence 568999999999999888875 556899999999999999999754332 22 24799999999999977667999
Q ss_pred EEeeCCCCC--C-------hHhHHHHHHhccCCCeEEEEe
Q 047386 197 VVDLDPYGS--P-------SVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 197 vIdLDPyGs--~-------~~fld~A~~~l~~gGlL~vTa 227 (581)
+|++|++.. + .+|+..+.+.|++||++.+.+
T Consensus 376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred EEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 999997521 1 258888899999999999875
No 68
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.78 E-value=4.5e-08 Score=106.33 Aligned_cols=101 Identities=23% Similarity=0.206 Sum_probs=78.2
Q ss_pred CCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEeeC
Q 047386 122 PPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDLD 201 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdLD 201 (581)
+.+|||+.||||.+++.++++.+ ..+|+++|+|+.|++.+++|++.|+. +++++++|.+........+||+|+.+
T Consensus 252 ~~rVLDLGcGSG~IaiaLA~~~p-~a~VtAVDiS~~ALe~AreNa~~~g~----rV~fi~gDl~e~~l~~~~~FDLIVSN 326 (423)
T PRK14966 252 NGRVWDLGTGSGAVAVTVALERP-DAFVRASDISPPALETARKNAADLGA----RVEFAHGSWFDTDMPSEGKWDIIVSN 326 (423)
T ss_pred CCEEEEEeChhhHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCC----cEEEEEcchhccccccCCCccEEEEC
Confidence 45899999999999999998644 45799999999999999999998875 58899999866432123479999999
Q ss_pred CCCCCh-----------------------------HhHHHHHHhccCCCeEEEEe
Q 047386 202 PYGSPS-----------------------------VFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 202 PyGs~~-----------------------------~fld~A~~~l~~gGlL~vTa 227 (581)
|+..+. .+++.+-+.|++||+|+++.
T Consensus 327 PPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEi 381 (423)
T PRK14966 327 PPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEH 381 (423)
T ss_pred CCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 942111 23334556789999988874
No 69
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.77 E-value=4.7e-08 Score=96.74 Aligned_cols=100 Identities=22% Similarity=0.245 Sum_probs=80.3
Q ss_pred CCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEee
Q 047386 121 KPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDL 200 (581)
Q Consensus 121 ~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdL 200 (581)
.+.+|||+.||||..++.++...+-..+|+++|+++.+++.+++|++.+++. +++++++|+...+.. ...||+|++
T Consensus 77 ~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~---~v~~~~~d~~~~~~~-~~~fD~Ii~ 152 (215)
T TIGR00080 77 PGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLD---NVIVIVGDGTQGWEP-LAPYDRIYV 152 (215)
T ss_pred CcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCC---CeEEEECCcccCCcc-cCCCCEEEE
Confidence 4669999999999999988875321246999999999999999999999974 689999999765432 357999999
Q ss_pred CCCCCChHhHHHHHHhccCCCeEEEE
Q 047386 201 DPYGSPSVFLDSAIQSVADGGMLMCT 226 (581)
Q Consensus 201 DPyGs~~~fld~A~~~l~~gGlL~vT 226 (581)
|+... ...+...+.|++||.|++.
T Consensus 153 ~~~~~--~~~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 153 TAAGP--KIPEALIDQLKEGGILVMP 176 (215)
T ss_pred cCCcc--cccHHHHHhcCcCcEEEEE
Confidence 97422 2345567889999999875
No 70
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.75 E-value=3.9e-08 Score=99.73 Aligned_cols=93 Identities=27% Similarity=0.305 Sum_probs=76.3
Q ss_pred CCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEee
Q 047386 121 KPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDL 200 (581)
Q Consensus 121 ~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdL 200 (581)
.+.+|||+.||||+.++.+++ .|+.+|+++|+|+.+++.+++|++.|++. +.+.+..+|. .||+|+.
T Consensus 119 ~~~~VLDiGcGsG~l~i~~~~--~g~~~v~giDis~~~l~~A~~n~~~~~~~--~~~~~~~~~~---------~fD~Vva 185 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAAAK--LGAKKVLAVDIDPQAVEAARENAELNGVE--LNVYLPQGDL---------KADVIVA 185 (250)
T ss_pred CCCEEEEeCCcHHHHHHHHHH--cCCCeEEEEECCHHHHHHHHHHHHHcCCC--ceEEEccCCC---------CcCEEEE
Confidence 567999999999999998777 37778999999999999999999999985 4566555542 6999998
Q ss_pred CCCCC-ChHhHHHHHHhccCCCeEEEE
Q 047386 201 DPYGS-PSVFLDSAIQSVADGGMLMCT 226 (581)
Q Consensus 201 DPyGs-~~~fld~A~~~l~~gGlL~vT 226 (581)
+.... -..++..+.+.|++||.|+++
T Consensus 186 ni~~~~~~~l~~~~~~~LkpgG~lils 212 (250)
T PRK00517 186 NILANPLLELAPDLARLLKPGGRLILS 212 (250)
T ss_pred cCcHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 76432 235667788999999999986
No 71
>PRK01581 speE spermidine synthase; Validated
Probab=98.75 E-value=2.5e-07 Score=98.94 Aligned_cols=105 Identities=21% Similarity=0.315 Sum_probs=82.8
Q ss_pred CCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHH---Hh--CCCCCCcEEEEehhHHHHHhhCCCcc
Q 047386 121 KPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIK---FN--GSVACSKVESHLADARVYMLTHPKEF 195 (581)
Q Consensus 121 ~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~---~N--~~~~~~~v~v~~~DA~~~l~~~~~~f 195 (581)
.+.+||++-+|+|....++++. +++.+|+++|+|+..+++++++-. .| .+. ..+++++.+||..++.....+|
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~-~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~-DpRV~vvi~Da~~fL~~~~~~Y 227 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKY-ETVLHVDLVDLDGSMINMARNVPELVSLNKSAFF-DNRVNVHVCDAKEFLSSPSSLY 227 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhc-CCCCeEEEEeCCHHHHHHHHhccccchhccccCC-CCceEEEECcHHHHHHhcCCCc
Confidence 4569999999999966555553 568899999999999999997422 22 232 2589999999999998766789
Q ss_pred cEEeeCCCCC---------ChHhHHHHHHhccCCCeEEEEe
Q 047386 196 DVVDLDPYGS---------PSVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 196 DvIdLDPyGs---------~~~fld~A~~~l~~gGlL~vTa 227 (581)
|+|++|.+.. ...|+..+.+.|++||++.+.+
T Consensus 228 DVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs 268 (374)
T PRK01581 228 DVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQS 268 (374)
T ss_pred cEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 9999996421 1358888899999999998764
No 72
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.74 E-value=1e-07 Score=97.86 Aligned_cols=104 Identities=16% Similarity=0.292 Sum_probs=84.7
Q ss_pred CCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHh-C-CCCCCcEEEEehhHHHHHhhCCCcccEEe
Q 047386 122 PPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFN-G-SVACSKVESHLADARVYMLTHPKEFDVVD 199 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N-~-~~~~~~v~v~~~DA~~~l~~~~~~fDvId 199 (581)
+.+||++.+|+|..+..+++. .++.+|+++|+|+..++.+++++... + +. ..+++++.+|++.++....++||+|+
T Consensus 73 p~~VL~iG~G~G~~~~~ll~~-~~~~~v~~veid~~vi~~a~~~~~~~~~~~~-~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 73 PKHVLVIGGGDGGVLREVLKH-KSVEKATLVDIDEKVIELSKKFLPSLAGSYD-DPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCEEEEEcCCchHHHHHHHhC-CCcceEEEEeCCHHHHHHHHHHhHhhccccc-CCceEEEECchHHHHHhCCCCccEEE
Confidence 458999999999998888775 34789999999999999999998543 2 22 24788999999999977667899999
Q ss_pred eCCC---CC-----ChHhHHHHHHhccCCCeEEEEe
Q 047386 200 LDPY---GS-----PSVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 200 LDPy---Gs-----~~~fld~A~~~l~~gGlL~vTa 227 (581)
+|++ +. ...|+..+.+.|++||+|++.+
T Consensus 151 ~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~ 186 (270)
T TIGR00417 151 VDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQS 186 (270)
T ss_pred EeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence 9985 22 2367888889999999998863
No 73
>PRK14968 putative methyltransferase; Provisional
Probab=98.74 E-value=4.9e-07 Score=85.99 Aligned_cols=100 Identities=30% Similarity=0.374 Sum_probs=80.9
Q ss_pred CCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEeeC
Q 047386 122 PPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDLD 201 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdLD 201 (581)
+.+|||+.||+|..++.++.. + ..|+++|+|+.+++.+++|+..|++.. ..+.+.++|+...+. ...||+|+.+
T Consensus 24 ~~~vLd~G~G~G~~~~~l~~~--~-~~v~~~D~s~~~~~~a~~~~~~~~~~~-~~~~~~~~d~~~~~~--~~~~d~vi~n 97 (188)
T PRK14968 24 GDRVLEVGTGSGIVAIVAAKN--G-KKVVGVDINPYAVECAKCNAKLNNIRN-NGVEVIRSDLFEPFR--GDKFDVILFN 97 (188)
T ss_pred CCEEEEEccccCHHHHHHHhh--c-ceEEEEECCHHHHHHHHHHHHHcCCCC-cceEEEecccccccc--ccCceEEEEC
Confidence 568999999999999999985 4 679999999999999999999999851 227888999766543 2379999999
Q ss_pred C-CCC------------------------ChHhHHHHHHhccCCCeEEEEe
Q 047386 202 P-YGS------------------------PSVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 202 P-yGs------------------------~~~fld~A~~~l~~gGlL~vTa 227 (581)
| |.. ...|+..+.+.|++||.+++..
T Consensus 98 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~ 148 (188)
T PRK14968 98 PPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQ 148 (188)
T ss_pred CCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 7 422 0236778889999999988864
No 74
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.73 E-value=5.7e-08 Score=103.41 Aligned_cols=97 Identities=21% Similarity=0.297 Sum_probs=80.9
Q ss_pred CeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEeeCC
Q 047386 123 PRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDLDP 202 (581)
Q Consensus 123 ~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdLDP 202 (581)
.+|||+.||+|.+++.+++..++ .+|+++|+|+.|++.+++|++.|++. .+++.+|+...+ ..+||+|+.+|
T Consensus 198 g~VLDlGCG~G~ls~~la~~~p~-~~v~~vDis~~Al~~A~~nl~~n~l~----~~~~~~D~~~~~---~~~fDlIvsNP 269 (342)
T PRK09489 198 GKVLDVGCGAGVLSAVLARHSPK-IRLTLSDVSAAALESSRATLAANGLE----GEVFASNVFSDI---KGRFDMIISNP 269 (342)
T ss_pred CeEEEeccCcCHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCC----CEEEEccccccc---CCCccEEEECC
Confidence 47999999999999999986443 47999999999999999999999985 366778875543 45899999998
Q ss_pred -CCC--------ChHhHHHHHHhccCCCeEEEEe
Q 047386 203 -YGS--------PSVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 203 -yGs--------~~~fld~A~~~l~~gGlL~vTa 227 (581)
|.. ...|+..|.+.|++||.|.+.+
T Consensus 270 PFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVa 303 (342)
T PRK09489 270 PFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVA 303 (342)
T ss_pred CccCCccccHHHHHHHHHHHHHhcCcCCEEEEEE
Confidence 422 2478888999999999999876
No 75
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.72 E-value=5.9e-08 Score=96.41 Aligned_cols=105 Identities=24% Similarity=0.354 Sum_probs=89.2
Q ss_pred CCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhC-----CCcc
Q 047386 121 KPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTH-----PKEF 195 (581)
Q Consensus 121 ~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~-----~~~f 195 (581)
.+.+||+.-+++|.=+|.+|..++.-.+|+.+|+|+.-.+.+++|++..|+. ++|+++.+||..+|... ...|
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~--~~I~~~~gda~~~l~~l~~~~~~~~f 122 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLD--DRIEVIEGDALEVLPELANDGEEGQF 122 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGG--GGEEEEES-HHHHHHHHHHTTTTTSE
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCC--CcEEEEEeccHhhHHHHHhccCCCce
Confidence 4679999999999999999987765568999999999999999999999996 79999999999987642 2479
Q ss_pred cEEeeCCC-CCChHhHHHHHHhccCCCeEEEEe
Q 047386 196 DVVDLDPY-GSPSVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 196 DvIdLDPy-Gs~~~fld~A~~~l~~gGlL~vTa 227 (581)
|+||+|-- +.-..|++.++++|++||+|++--
T Consensus 123 D~VFiDa~K~~y~~y~~~~~~ll~~ggvii~DN 155 (205)
T PF01596_consen 123 DFVFIDADKRNYLEYFEKALPLLRPGGVIIADN 155 (205)
T ss_dssp EEEEEESTGGGHHHHHHHHHHHEEEEEEEEEET
T ss_pred eEEEEcccccchhhHHHHHhhhccCCeEEEEcc
Confidence 99999973 333578888999999999999864
No 76
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=98.70 E-value=1.5e-07 Score=93.18 Aligned_cols=102 Identities=21% Similarity=0.253 Sum_probs=82.1
Q ss_pred CCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEeeC
Q 047386 122 PPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDLD 201 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdLD 201 (581)
+.+|||+.||+|..++.++..++...+|+++|+|+..++.+++|+..+++. +++++++|+..+-. ....||+|.+.
T Consensus 46 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~---~v~~~~~d~~~~~~-~~~~fD~V~~~ 121 (231)
T TIGR02752 46 GTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLH---NVELVHGNAMELPF-DDNSFDYVTIG 121 (231)
T ss_pred CCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCC---ceEEEEechhcCCC-CCCCccEEEEe
Confidence 568999999999999999876533458999999999999999999988763 68999999976532 24689999886
Q ss_pred C-C---CCChHhHHHHHHhccCCCeEEEEe
Q 047386 202 P-Y---GSPSVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 202 P-y---Gs~~~fld~A~~~l~~gGlL~vTa 227 (581)
- + ..+..++..+.+.|++||+|++..
T Consensus 122 ~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 151 (231)
T TIGR02752 122 FGLRNVPDYMQVLREMYRVVKPGGKVVCLE 151 (231)
T ss_pred cccccCCCHHHHHHHHHHHcCcCeEEEEEE
Confidence 3 2 223467788889999999998754
No 77
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.69 E-value=1.8e-07 Score=93.74 Aligned_cols=104 Identities=26% Similarity=0.389 Sum_probs=91.8
Q ss_pred CCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEe-hhHHHHHhh-CCCcccEE
Q 047386 121 KPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHL-ADARVYMLT-HPKEFDVV 198 (581)
Q Consensus 121 ~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~-~DA~~~l~~-~~~~fDvI 198 (581)
.+.+||++-.+.|.=+|..|.+++.-.++|.+|+|++-.+.+++|++.-|+. ++|+.+. +|+...|.. ....||+|
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~--~~i~~~~~gdal~~l~~~~~~~fDli 136 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVD--DRIELLLGGDALDVLSRLLDGSFDLV 136 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEEecCcHHHHHHhccCCCccEE
Confidence 4679999999999999999999985568999999999999999999999997 6788888 699999975 35789999
Q ss_pred eeCC-CCCChHhHHHHHHhccCCCeEEEE
Q 047386 199 DLDP-YGSPSVFLDSAIQSVADGGMLMCT 226 (581)
Q Consensus 199 dLDP-yGs~~~fld~A~~~l~~gGlL~vT 226 (581)
|+|- -+.-.+|++.++++|++||+|.+-
T Consensus 137 FIDadK~~yp~~le~~~~lLr~GGliv~D 165 (219)
T COG4122 137 FIDADKADYPEYLERALPLLRPGGLIVAD 165 (219)
T ss_pred EEeCChhhCHHHHHHHHHHhCCCcEEEEe
Confidence 9996 333458999999999999999884
No 78
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.69 E-value=1.2e-07 Score=96.22 Aligned_cols=101 Identities=29% Similarity=0.352 Sum_probs=79.4
Q ss_pred CCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEee
Q 047386 121 KPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDL 200 (581)
Q Consensus 121 ~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdL 200 (581)
.+.+|||+.||+|..++.++...+ ...|+++|+|+.+++.+++|+. ++.. .++.++++|+...+. ...||+|+.
T Consensus 108 ~~~~vLDiG~GsG~~~~~la~~~~-~~~v~~iDis~~~l~~a~~n~~-~~~~--~~i~~~~~d~~~~~~--~~~fD~Iv~ 181 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALAKERP-DAEVTAVDISPEALAVARRNAK-HGLG--ARVEFLQGDWFEPLP--GGRFDLIVS 181 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHH-hCCC--CcEEEEEccccCcCC--CCceeEEEE
Confidence 356899999999999999999754 4679999999999999999999 3332 478999999854432 358999999
Q ss_pred CC-CCCC-----------------------------hHhHHHHHHhccCCCeEEEEe
Q 047386 201 DP-YGSP-----------------------------SVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 201 DP-yGs~-----------------------------~~fld~A~~~l~~gGlL~vTa 227 (581)
+| |... ..++..+.+.|++||.|++..
T Consensus 182 npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 182 NPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred CCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 98 4321 124455668999999999964
No 79
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.69 E-value=1.4e-07 Score=93.08 Aligned_cols=102 Identities=23% Similarity=0.258 Sum_probs=81.5
Q ss_pred CCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEee
Q 047386 121 KPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDL 200 (581)
Q Consensus 121 ~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdL 200 (581)
.+.+|||+.||||..+..++..++...+|+++|+++.+++.+++|+..+++. ++++++++|+...+.. ...||+|++
T Consensus 72 ~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~--~~v~~~~~d~~~~~~~-~~~fD~Ii~ 148 (205)
T PRK13944 72 PGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYW--GVVEVYHGDGKRGLEK-HAPFDAIIV 148 (205)
T ss_pred CCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC--CcEEEEECCcccCCcc-CCCccEEEE
Confidence 3569999999999999888875433458999999999999999999999985 4689999999776543 358999999
Q ss_pred CCCCCChHhHHHHHHhccCCCeEEEEe
Q 047386 201 DPYGSPSVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 201 DPyGs~~~fld~A~~~l~~gGlL~vTa 227 (581)
+--.. .+.+..++.|++||.|.+.-
T Consensus 149 ~~~~~--~~~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 149 TAAAS--TIPSALVRQLKDGGVLVIPV 173 (205)
T ss_pred ccCcc--hhhHHHHHhcCcCcEEEEEE
Confidence 95321 23355678899999998853
No 80
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.68 E-value=9.5e-08 Score=99.41 Aligned_cols=97 Identities=23% Similarity=0.332 Sum_probs=82.0
Q ss_pred eEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEeeCCC
Q 047386 124 RVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDLDPY 203 (581)
Q Consensus 124 ~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdLDPy 203 (581)
+|||+-||-|.+||.+++..| ..+|+++|+|..|+++.++|++.|+++ ..++...|...-.. .+||.|+..|+
T Consensus 161 ~vlDlGCG~Gvlg~~la~~~p-~~~vtmvDvn~~Av~~ar~Nl~~N~~~---~~~v~~s~~~~~v~---~kfd~IisNPP 233 (300)
T COG2813 161 KVLDLGCGYGVLGLVLAKKSP-QAKLTLVDVNARAVESARKNLAANGVE---NTEVWASNLYEPVE---GKFDLIISNPP 233 (300)
T ss_pred cEEEeCCCccHHHHHHHHhCC-CCeEEEEecCHHHHHHHHHhHHHcCCC---ccEEEEeccccccc---ccccEEEeCCC
Confidence 899999999999999999865 568999999999999999999999996 22677777655543 48999999995
Q ss_pred ---CCC------hHhHHHHHHhccCCCeEEEEe
Q 047386 204 ---GSP------SVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 204 ---Gs~------~~fld~A~~~l~~gGlL~vTa 227 (581)
|.. ..++..|...|++||-|.|-+
T Consensus 234 fh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVa 266 (300)
T COG2813 234 FHAGKAVVHSLAQEIIAAAARHLKPGGELWIVA 266 (300)
T ss_pred ccCCcchhHHHHHHHHHHHHHhhccCCEEEEEE
Confidence 221 267888999999999999876
No 81
>PLN02366 spermidine synthase
Probab=98.67 E-value=2e-07 Score=97.92 Aligned_cols=104 Identities=20% Similarity=0.316 Sum_probs=85.3
Q ss_pred CCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHh--CCCCCCcEEEEehhHHHHHhhC-CCcccEE
Q 047386 122 PPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFN--GSVACSKVESHLADARVYMLTH-PKEFDVV 198 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N--~~~~~~~v~v~~~DA~~~l~~~-~~~fDvI 198 (581)
+.+||++-+|.|....+.++. +++.+|+++|+|+..+++.++.+... +++ ..+++++.+|++.++... .++||+|
T Consensus 92 pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~-dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 92 PKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFD-DPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccC-CCceEEEEChHHHHHhhccCCCCCEE
Confidence 568999999999998877775 67899999999999999999987642 333 258999999999999765 4689999
Q ss_pred eeCCC---CCC-----hHhHHHHHHhccCCCeEEEEe
Q 047386 199 DLDPY---GSP-----SVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 199 dLDPy---Gs~-----~~fld~A~~~l~~gGlL~vTa 227 (581)
++|.+ +.+ ..|+..+.++|++||+|++-+
T Consensus 170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 170 IVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred EEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 99853 222 368888899999999997754
No 82
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.66 E-value=2.5e-07 Score=93.79 Aligned_cols=101 Identities=20% Similarity=0.262 Sum_probs=84.6
Q ss_pred CCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEeeC
Q 047386 122 PPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDLD 201 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdLD 201 (581)
+.+|||+-||+|..++.++.. | .+|+++|+|+.+++.+++++...++. .+++++++|+..+.......||+|.+.
T Consensus 45 ~~~vLDiGcG~G~~a~~la~~--g-~~v~~vD~s~~~l~~a~~~~~~~g~~--~~v~~~~~d~~~l~~~~~~~fD~V~~~ 119 (255)
T PRK11036 45 PLRVLDAGGGEGQTAIKLAEL--G-HQVILCDLSAEMIQRAKQAAEAKGVS--DNMQFIHCAAQDIAQHLETPVDLILFH 119 (255)
T ss_pred CCEEEEeCCCchHHHHHHHHc--C-CEEEEEECCHHHHHHHHHHHHhcCCc--cceEEEEcCHHHHhhhcCCCCCEEEeh
Confidence 458999999999999999984 5 57999999999999999999998875 578999999988753334689999876
Q ss_pred C-C---CCChHhHHHHHHhccCCCeEEEEe
Q 047386 202 P-Y---GSPSVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 202 P-y---Gs~~~fld~A~~~l~~gGlL~vTa 227 (581)
- + ..+..++..+.+.|++||+|.++.
T Consensus 120 ~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~ 149 (255)
T PRK11036 120 AVLEWVADPKSVLQTLWSVLRPGGALSLMF 149 (255)
T ss_pred hHHHhhCCHHHHHHHHHHHcCCCeEEEEEE
Confidence 4 1 235678888899999999998864
No 83
>PLN02823 spermine synthase
Probab=98.65 E-value=2.4e-07 Score=98.53 Aligned_cols=104 Identities=25% Similarity=0.369 Sum_probs=85.9
Q ss_pred CCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhC--CCCCCcEEEEehhHHHHHhhCCCcccEEe
Q 047386 122 PPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNG--SVACSKVESHLADARVYMLTHPKEFDVVD 199 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~--~~~~~~v~v~~~DA~~~l~~~~~~fDvId 199 (581)
+.+||.+-+|.|..+.++++. +++.+|+++|+|+..++++++++..++ +. ..+++++.+|++.+|....++||+|+
T Consensus 104 pk~VLiiGgG~G~~~re~l~~-~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~-dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 104 PKTVFIMGGGEGSTAREVLRH-KTVEKVVMCDIDQEVVDFCRKHLTVNREAFC-DKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCEEEEECCCchHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhccccccccc-CCceEEEEChhHHHHhhCCCCccEEE
Confidence 568999999999998888775 568899999999999999999987653 22 25899999999999977667899999
Q ss_pred eCCC-----CC-----ChHhHH-HHHHhccCCCeEEEEe
Q 047386 200 LDPY-----GS-----PSVFLD-SAIQSVADGGMLMCTA 227 (581)
Q Consensus 200 LDPy-----Gs-----~~~fld-~A~~~l~~gGlL~vTa 227 (581)
+|.+ |. ...|+. .+.+.|++||+|.+-+
T Consensus 182 ~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 182 GDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred ecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 9942 21 236887 7888999999998765
No 84
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.64 E-value=2.4e-07 Score=94.51 Aligned_cols=105 Identities=18% Similarity=0.184 Sum_probs=89.9
Q ss_pred CCCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhC------CC
Q 047386 120 LKPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTH------PK 193 (581)
Q Consensus 120 ~~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~------~~ 193 (581)
....+||++-.++|.-+|.+|+.++.-.+|+.+|.+++..+.+++|++..|+. ++|+++.+||...|... ..
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~--~~I~~~~G~a~e~L~~l~~~~~~~~ 155 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVA--HKIDFREGPALPVLDQMIEDGKYHG 155 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCC--CceEEEeccHHHHHHHHHhccccCC
Confidence 35679999999999999999986643458999999999999999999999996 79999999999988652 25
Q ss_pred cccEEeeCCC-CCChHhHHHHHHhccCCCeEEEE
Q 047386 194 EFDVVDLDPY-GSPSVFLDSAIQSVADGGMLMCT 226 (581)
Q Consensus 194 ~fDvIdLDPy-Gs~~~fld~A~~~l~~gGlL~vT 226 (581)
.||+||+|-- .....+++.++++|++||+|++-
T Consensus 156 ~fD~iFiDadK~~Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 156 TFDFIFVDADKDNYINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred cccEEEecCCHHHhHHHHHHHHHhcCCCeEEEEc
Confidence 8999999973 33457889999999999999883
No 85
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=98.63 E-value=1.3e-07 Score=95.44 Aligned_cols=100 Identities=24% Similarity=0.350 Sum_probs=85.7
Q ss_pred CCCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEe
Q 047386 120 LKPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVD 199 (581)
Q Consensus 120 ~~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvId 199 (581)
+.+.+|||+-||-|+++...|++ | ..|+++|+++.+++.++.-+..+++. +...+..+..+... .++||||.
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~--G-a~VtgiD~se~~I~~Ak~ha~e~gv~----i~y~~~~~edl~~~-~~~FDvV~ 129 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARL--G-ASVTGIDASEKPIEVAKLHALESGVN----IDYRQATVEDLASA-GGQFDVVT 129 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHC--C-CeeEEecCChHHHHHHHHhhhhcccc----ccchhhhHHHHHhc-CCCccEEE
Confidence 56889999999999999999996 7 57999999999999999999999984 66778888888764 37999995
Q ss_pred e----CCCCCChHhHHHHHHhccCCCeEEEEe
Q 047386 200 L----DPYGSPSVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 200 L----DPyGs~~~fld~A~~~l~~gGlL~vTa 227 (581)
. -=+-.|..|+..+.++|++||+|.++.
T Consensus 130 cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~ST 161 (243)
T COG2227 130 CMEVLEHVPDPESFLRACAKLVKPGGILFLST 161 (243)
T ss_pred EhhHHHccCCHHHHHHHHHHHcCCCcEEEEec
Confidence 3 224556789999999999999999864
No 86
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.61 E-value=5.7e-07 Score=87.85 Aligned_cols=102 Identities=17% Similarity=0.200 Sum_probs=84.1
Q ss_pred CCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhC--CCcccEEe
Q 047386 122 PPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTH--PKEFDVVD 199 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~--~~~fDvId 199 (581)
..+|||+-||+|.+++.+|...++ ..|+++|+++.+++.+++|+..+++. +++++++|+..++... ...||.|+
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~p~-~~v~gvD~~~~~l~~a~~~~~~~~l~---ni~~i~~d~~~~~~~~~~~~~~d~v~ 92 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQNPD-KNFLGIEIHTPIVLAANNKANKLGLK---NLHVLCGDANELLDKFFPDGSLSKVF 92 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhCCC-CCEEEEEeeHHHHHHHHHHHHHhCCC---CEEEEccCHHHHHHhhCCCCceeEEE
Confidence 458999999999999999987654 47999999999999999999999884 7999999998876432 24799998
Q ss_pred eC---CCCCC---------hHhHHHHHHhccCCCeEEEEe
Q 047386 200 LD---PYGSP---------SVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 200 LD---PyGs~---------~~fld~A~~~l~~gGlL~vTa 227 (581)
++ |+-.. ..|+..+.+.|++||.|++.+
T Consensus 93 ~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~t 132 (194)
T TIGR00091 93 LNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKT 132 (194)
T ss_pred EECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEe
Confidence 85 43211 368888999999999998864
No 87
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.61 E-value=9.8e-08 Score=100.98 Aligned_cols=100 Identities=24% Similarity=0.358 Sum_probs=82.6
Q ss_pred CCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEeh-hHHHHHhhCCCcccEEe
Q 047386 121 KPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLA-DARVYMLTHPKEFDVVD 199 (581)
Q Consensus 121 ~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~-DA~~~l~~~~~~fDvId 199 (581)
.|..|||.|||||.+-|++..- |+ +|+.+|++...++-++.|++.-+++ .+.+... ||..+=. .+..||-|.
T Consensus 197 ~G~~vlDPFcGTGgiLiEagl~--G~-~viG~Did~~mv~gak~Nl~~y~i~---~~~~~~~~Da~~lpl-~~~~vdaIa 269 (347)
T COG1041 197 RGELVLDPFCGTGGILIEAGLM--GA-RVIGSDIDERMVRGAKINLEYYGIE---DYPVLKVLDATNLPL-RDNSVDAIA 269 (347)
T ss_pred cCCEeecCcCCccHHHHhhhhc--Cc-eEeecchHHHHHhhhhhhhhhhCcC---ceeEEEecccccCCC-CCCccceEE
Confidence 4779999999999999999884 75 6999999999999999999999985 4666666 8876642 123699999
Q ss_pred eCC-CCCCh------------HhHHHHHHhccCCCeEEEEe
Q 047386 200 LDP-YGSPS------------VFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 200 LDP-yGs~~------------~fld~A~~~l~~gGlL~vTa 227 (581)
.|| ||-.+ .+++++...|++||.+.+.+
T Consensus 270 tDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~ 310 (347)
T COG1041 270 TDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAA 310 (347)
T ss_pred ecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEec
Confidence 998 77533 57788888999999998876
No 88
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.60 E-value=6.6e-08 Score=90.89 Aligned_cols=94 Identities=16% Similarity=0.262 Sum_probs=80.7
Q ss_pred cCCCCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccE
Q 047386 118 RQLKPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDV 197 (581)
Q Consensus 118 ~~~~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDv 197 (581)
+.+.|..++|+-||+|.+++.++. ++...|+.+||+|+|+|...+|++...+. +.+.+.|...+-..+ ..||.
T Consensus 45 gdiEgkkl~DLgcgcGmLs~a~sm--~~~e~vlGfDIdpeALEIf~rNaeEfEvq----idlLqcdildle~~~-g~fDt 117 (185)
T KOG3420|consen 45 GDIEGKKLKDLGCGCGMLSIAFSM--PKNESVLGFDIDPEALEIFTRNAEEFEVQ----IDLLQCDILDLELKG-GIFDT 117 (185)
T ss_pred ccccCcchhhhcCchhhhHHHhhc--CCCceEEeeecCHHHHHHHhhchHHhhhh----hheeeeeccchhccC-CeEee
Confidence 567899999999999999988877 68999999999999999999999988774 578888887776554 68999
Q ss_pred EeeCC-CCCC-----hHhHHHHHHhcc
Q 047386 198 VDLDP-YGSP-----SVFLDSAIQSVA 218 (581)
Q Consensus 198 IdLDP-yGs~-----~~fld~A~~~l~ 218 (581)
..+|| ||+- ..|++.|++..+
T Consensus 118 aviNppFGTk~~~aDm~fv~~al~~~~ 144 (185)
T KOG3420|consen 118 AVINPPFGTKKKGADMEFVSAALKVAS 144 (185)
T ss_pred EEecCCCCcccccccHHHHHHHHHHHH
Confidence 99998 8873 479999998765
No 89
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.58 E-value=4e-07 Score=97.45 Aligned_cols=105 Identities=29% Similarity=0.306 Sum_probs=85.5
Q ss_pred CCCCeEEEecCcccHHHHHHhhhcCC-ccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCC--Cccc
Q 047386 120 LKPPRVLEALSASGLRALRYAREVEG-IGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHP--KEFD 196 (581)
Q Consensus 120 ~~~~~VLDafsgSG~rgIr~a~E~~G-a~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~--~~fD 196 (581)
..|.+|||+.||-|+=....|.-..+ ...|+|||+|+.=++.+++|++..|+. ++.+++.|+..+..... .+||
T Consensus 155 ~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~---nv~~~~~d~~~~~~~~~~~~~fD 231 (355)
T COG0144 155 KPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVR---NVIVVNKDARRLAELLPGGEKFD 231 (355)
T ss_pred CCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCC---ceEEEecccccccccccccCcCc
Confidence 35789999999999999999876543 244799999999999999999999985 58889999887654322 3699
Q ss_pred EEeeCCCCCCh--------------------------HhHHHHHHhccCCCeEEEEe
Q 047386 197 VVDLDPYGSPS--------------------------VFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 197 vIdLDPyGs~~--------------------------~fld~A~~~l~~gGlL~vTa 227 (581)
.|.+|++-|.. .+|++|+++|++||.|..+.
T Consensus 232 ~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYST 288 (355)
T COG0144 232 RILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYST 288 (355)
T ss_pred EEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEc
Confidence 99999984422 56788999999999987755
No 90
>PHA03412 putative methyltransferase; Provisional
Probab=98.57 E-value=2.6e-07 Score=93.67 Aligned_cols=147 Identities=16% Similarity=0.168 Sum_probs=97.6
Q ss_pred CCeEEEecCcccHHHHHHhhhcC--CccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEe
Q 047386 122 PPRVLEALSASGLRALRYAREVE--GIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVD 199 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~~--Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvId 199 (581)
+.+|||+.||||.+++.++++.. ....|+++|+|+.|++++++|+. .+.++++|+..... ..+||+|+
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~--------~~~~~~~D~~~~~~--~~~FDlII 119 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP--------EATWINADALTTEF--DTLFDMAI 119 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc--------CCEEEEcchhcccc--cCCccEEE
Confidence 45899999999999999987642 23489999999999999998863 25788899875432 35899999
Q ss_pred eCC-CCCChHhHHHHHHhccCCCeEEEEeccchhhcCCCcchhhhhccCccCCCccchhhhHHHHHHHHHHHHHHcCCce
Q 047386 200 LDP-YGSPSVFLDSAIQSVADGGMLMCTATDMAVLCGGNGEVCYSKYGSYPLRGKYCHEMALRILLACIESHANRYKRYI 278 (581)
Q Consensus 200 LDP-yGs~~~fld~A~~~l~~gGlL~vTaTD~a~Lcg~~~~~c~rkYG~~~~k~~~~hE~~lRill~~i~~~Aa~~~r~i 278 (581)
..| |+... +.|. -+.+ - ..++ .+-|+....+ .++.|..|
T Consensus 120 sNPPY~~~~-------------------~~d~---~ar~--------~--------g~~~-~~~li~~A~~-Ll~~G~~I 159 (241)
T PHA03412 120 SNPPFGKIK-------------------TSDF---KGKY--------T--------GAEF-EYKVIERASQ-IARQGTFI 159 (241)
T ss_pred ECCCCCCcc-------------------cccc---CCcc--------c--------ccHH-HHHHHHHHHH-HcCCCEEE
Confidence 999 44210 0111 0101 0 0112 2223444444 77888888
Q ss_pred EEE----eecccCceEEEEEEEEcChhhhccccccceEEEEcCCCCc
Q 047386 279 EPV----LSVQMDFYVRVFVRIYTSASAMKSTPLKLSYVYQCIGCDS 321 (581)
Q Consensus 279 ~Pl----ls~s~dhY~RvfVrV~~~~~~~k~~~~k~g~v~~C~~C~~ 321 (581)
-|- |.+|-.+|+|- ++ .++..++++-..++|++.+ ++||-
T Consensus 160 LP~~~~~~~y~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~-~~~~~ 203 (241)
T PHA03412 160 IPQMSANFRYSGTHYFRQ-DE-STTSSKCKKFLDETGLEMN-PGCGI 203 (241)
T ss_pred eCcccccCcccCccceee-cc-CcccHHHHHHHHhcCeeec-CCCCc
Confidence 885 44555556552 22 3455678888889999976 78984
No 91
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.56 E-value=4.2e-07 Score=90.18 Aligned_cols=101 Identities=23% Similarity=0.290 Sum_probs=80.4
Q ss_pred CCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEee
Q 047386 121 KPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDL 200 (581)
Q Consensus 121 ~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdL 200 (581)
.+.+|||+.||||..+..++..+....+|+++|+++..++.+++|++.+++. ++++.++|+...... ...||+|++
T Consensus 76 ~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~---~v~~~~gd~~~~~~~-~~~fD~I~~ 151 (212)
T PRK13942 76 EGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYD---NVEVIVGDGTLGYEE-NAPYDRIYV 151 (212)
T ss_pred CcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC---CeEEEECCcccCCCc-CCCcCEEEE
Confidence 4669999999999999888875422358999999999999999999999873 689999998765432 357999999
Q ss_pred CCCCCChHhHHHHHHhccCCCeEEEEe
Q 047386 201 DPYGSPSVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 201 DPyGs~~~fld~A~~~l~~gGlL~vTa 227 (581)
+-... ......++.|++||.|++..
T Consensus 152 ~~~~~--~~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 152 TAAGP--DIPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CCCcc--cchHHHHHhhCCCcEEEEEE
Confidence 85322 33455667899999998864
No 92
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.55 E-value=9.7e-07 Score=72.80 Aligned_cols=98 Identities=28% Similarity=0.284 Sum_probs=79.3
Q ss_pred eEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEeeCCC
Q 047386 124 RVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDLDPY 203 (581)
Q Consensus 124 ~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdLDPy 203 (581)
+|||..||+|..+..++. ....+++++|+++.+++.++++...++. ..+.++.+|+..........||+|++++.
T Consensus 1 ~ildig~G~G~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~d~i~~~~~ 75 (107)
T cd02440 1 RVLDLGCGTGALALALAS--GPGARVTGVDISPVALELARKAAAALLA---DNVEVLKGDAEELPPEADESFDVIISDPP 75 (107)
T ss_pred CeEEEcCCccHHHHHHhc--CCCCEEEEEeCCHHHHHHHHHHHhcccc---cceEEEEcChhhhccccCCceEEEEEccc
Confidence 489999999999999987 3567999999999999999976555543 46889999998876422457999999984
Q ss_pred CCC-----hHhHHHHHHhccCCCeEEEE
Q 047386 204 GSP-----SVFLDSAIQSVADGGMLMCT 226 (581)
Q Consensus 204 Gs~-----~~fld~A~~~l~~gGlL~vT 226 (581)
... ..++..+.+.+++||+++++
T Consensus 76 ~~~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 76 LHHLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred eeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 332 56777888899999999886
No 93
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=98.51 E-value=7.5e-07 Score=92.48 Aligned_cols=105 Identities=28% Similarity=0.278 Sum_probs=86.2
Q ss_pred CCCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhC-CCcccEE
Q 047386 120 LKPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTH-PKEFDVV 198 (581)
Q Consensus 120 ~~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~-~~~fDvI 198 (581)
..+.+|||+.||-|+-+..++.-..+-..|+|+|+++.-++.+++|++..|+. .+.+.+.|+..+.... ...||.|
T Consensus 84 ~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~---~v~~~~~D~~~~~~~~~~~~fd~V 160 (283)
T PF01189_consen 84 QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVF---NVIVINADARKLDPKKPESKFDRV 160 (283)
T ss_dssp TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-S---SEEEEESHHHHHHHHHHTTTEEEE
T ss_pred cccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCc---eEEEEeeccccccccccccccchh
Confidence 35678999999999999999887666679999999999999999999999985 6888889999885432 3469999
Q ss_pred eeCCCCCCh--------------------------HhHHHHHHhc----cCCCeEEEEe
Q 047386 199 DLDPYGSPS--------------------------VFLDSAIQSV----ADGGMLMCTA 227 (581)
Q Consensus 199 dLDPyGs~~--------------------------~fld~A~~~l----~~gGlL~vTa 227 (581)
.+|++-|.. ..|+.|++.+ ++||.|..+.
T Consensus 161 lvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsT 219 (283)
T PF01189_consen 161 LVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYST 219 (283)
T ss_dssp EEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEE
T ss_pred hcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEe
Confidence 999984422 4567899999 9999877655
No 94
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.49 E-value=8.6e-07 Score=90.30 Aligned_cols=105 Identities=19% Similarity=0.260 Sum_probs=83.9
Q ss_pred CCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCC-CCCcEEEEehhHHHHHhhCCC-cccEEe
Q 047386 122 PPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSV-ACSKVESHLADARVYMLTHPK-EFDVVD 199 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~-~~~~v~v~~~DA~~~l~~~~~-~fDvId 199 (581)
+.+||=+-.|.|+..-+.++. +.+.+|+++|+|+..++++++-+...... ...+++++.+|++.+|.+..+ +||+|+
T Consensus 77 p~~VLiiGgG~G~~~~ell~~-~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi 155 (246)
T PF01564_consen 77 PKRVLIIGGGDGGTARELLKH-PPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVII 155 (246)
T ss_dssp T-EEEEEESTTSHHHHHHTTS-TT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEE
T ss_pred cCceEEEcCCChhhhhhhhhc-CCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEE
Confidence 568999999999887777664 66889999999999999999987764321 125899999999999988766 899999
Q ss_pred eCCCC---C-----ChHhHHHHHHhccCCCeEEEEe
Q 047386 200 LDPYG---S-----PSVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 200 LDPyG---s-----~~~fld~A~~~l~~gGlL~vTa 227 (581)
+|.+. . ..+|++.+.++|++||++++-+
T Consensus 156 ~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 156 VDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 99864 2 2489999999999999999875
No 95
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.48 E-value=1.4e-06 Score=87.46 Aligned_cols=108 Identities=23% Similarity=0.234 Sum_probs=94.6
Q ss_pred cCCCCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhC-----C
Q 047386 118 RQLKPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTH-----P 192 (581)
Q Consensus 118 ~~~~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~-----~ 192 (581)
+.+.++++||+-..||.=+|..|..++.-.+|++.|+|+.+++...+=++.-|+. ++|.+++++|..-|.+. .
T Consensus 70 ~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~--~KI~~i~g~a~esLd~l~~~~~~ 147 (237)
T KOG1663|consen 70 RLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVD--HKITFIEGPALESLDELLADGES 147 (237)
T ss_pred HHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhcccc--ceeeeeecchhhhHHHHHhcCCC
Confidence 4567889999999999999999999988889999999999999999999999997 79999999998876542 3
Q ss_pred CcccEEeeCCCCC-ChHhHHHHHHhccCCCeEEEEe
Q 047386 193 KEFDVVDLDPYGS-PSVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 193 ~~fDvIdLDPyGs-~~~fld~A~~~l~~gGlL~vTa 227 (581)
..||++|+|-.-. -..+.+.++++|+.||+|.+--
T Consensus 148 ~tfDfaFvDadK~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 148 GTFDFAFVDADKDNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred CceeEEEEccchHHHHHHHHHHHhhcccccEEEEec
Confidence 6799999998533 2488899999999999999953
No 96
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=98.47 E-value=2.5e-07 Score=101.60 Aligned_cols=99 Identities=18% Similarity=0.283 Sum_probs=80.4
Q ss_pred CCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhC-CC---ccc-
Q 047386 122 PPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTH-PK---EFD- 196 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~-~~---~fD- 196 (581)
+..+||++||||.+||-.|+ ++++|+.++++++|++.+++|++.||++ +.+++++-|..++... .. .=+
T Consensus 384 ~k~llDv~CGTG~iglala~---~~~~ViGvEi~~~aV~dA~~nA~~Ngis---Na~Fi~gqaE~~~~sl~~~~~~~~~~ 457 (534)
T KOG2187|consen 384 DKTLLDVCCGTGTIGLALAR---GVKRVIGVEISPDAVEDAEKNAQINGIS---NATFIVGQAEDLFPSLLTPCCDSETL 457 (534)
T ss_pred CcEEEEEeecCCceehhhhc---cccceeeeecChhhcchhhhcchhcCcc---ceeeeecchhhccchhcccCCCCCce
Confidence 46899999999999999997 7999999999999999999999999995 7899999888877553 12 225
Q ss_pred EEeeCCC--CCChHhHHHHHHhcc-CCCeEEEEe
Q 047386 197 VVDLDPY--GSPSVFLDSAIQSVA-DGGMLMCTA 227 (581)
Q Consensus 197 vIdLDPy--Gs~~~fld~A~~~l~-~gGlL~vTa 227 (581)
++++||+ |.-..|+. |++..+ ..-+++++|
T Consensus 458 v~iiDPpR~Glh~~~ik-~l~~~~~~~rlvyvSC 490 (534)
T KOG2187|consen 458 VAIIDPPRKGLHMKVIK-ALRAYKNPRRLVYVSC 490 (534)
T ss_pred EEEECCCcccccHHHHH-HHHhccCccceEEEEc
Confidence 8899996 55445554 444444 667999997
No 97
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.46 E-value=8.7e-07 Score=84.43 Aligned_cols=97 Identities=16% Similarity=0.112 Sum_probs=76.8
Q ss_pred CCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEeeC
Q 047386 122 PPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDLD 201 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdLD 201 (581)
+.+|||+.||+|.+++++++. ..+|+++|+|+.+++.+++|+.. . .+++++++|+..+... ...||+|+.+
T Consensus 14 ~~~vLEiG~G~G~lt~~l~~~---~~~v~~vE~~~~~~~~~~~~~~~--~---~~v~ii~~D~~~~~~~-~~~~d~vi~n 84 (169)
T smart00650 14 GDTVLEIGPGKGALTEELLER---AARVTAIEIDPRLAPRLREKFAA--A---DNLTVIHGDALKFDLP-KLQPYKVVGN 84 (169)
T ss_pred cCEEEEECCCccHHHHHHHhc---CCeEEEEECCHHHHHHHHHHhcc--C---CCEEEEECchhcCCcc-ccCCCEEEEC
Confidence 458999999999999999984 46899999999999999999864 2 3689999999887532 2369999999
Q ss_pred C-CCCChHhHHHHHHh--ccCCCeEEEEe
Q 047386 202 P-YGSPSVFLDSAIQS--VADGGMLMCTA 227 (581)
Q Consensus 202 P-yGs~~~fld~A~~~--l~~gGlL~vTa 227 (581)
| |....+.+...++. +..+|+|++..
T Consensus 85 ~Py~~~~~~i~~~l~~~~~~~~~~l~~q~ 113 (169)
T smart00650 85 LPYNISTPILFKLLEEPPAFRDAVLMVQK 113 (169)
T ss_pred CCcccHHHHHHHHHhcCCCcceEEEEEEH
Confidence 7 66566777777653 23667776653
No 98
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.46 E-value=1.4e-06 Score=92.14 Aligned_cols=102 Identities=19% Similarity=0.197 Sum_probs=82.6
Q ss_pred CCCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEe
Q 047386 120 LKPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVD 199 (581)
Q Consensus 120 ~~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvId 199 (581)
+.+.+|||+-||+|.+++.++. .|+ .|+++|+++..++.+++++..+++. .+++++++|+..+-. ....||+|+
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~--~g~-~V~GID~s~~~i~~Ar~~~~~~~~~--~~i~~~~~dae~l~~-~~~~FD~Vi 203 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLAR--MGA-TVTGVDAVDKNVKIARLHADMDPVT--STIEYLCTTAEKLAD-EGRKFDAVL 203 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHH--cCC-EEEEEeCCHHHHHHHHHHHHhcCcc--cceeEEecCHHHhhh-ccCCCCEEE
Confidence 3566999999999999998887 464 7999999999999999998887754 478999999987643 246899996
Q ss_pred eC-C---CCCChHhHHHHHHhccCCCeEEEEe
Q 047386 200 LD-P---YGSPSVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 200 LD-P---yGs~~~fld~A~~~l~~gGlL~vTa 227 (581)
.- - ...+..|+....++|++||.|+++.
T Consensus 204 ~~~vLeHv~d~~~~L~~l~r~LkPGG~liist 235 (322)
T PLN02396 204 SLEVIEHVANPAEFCKSLSALTIPNGATVLST 235 (322)
T ss_pred EhhHHHhcCCHHHHHHHHHHHcCCCcEEEEEE
Confidence 41 1 1234689999899999999999985
No 99
>PHA03411 putative methyltransferase; Provisional
Probab=98.46 E-value=1e-06 Score=91.21 Aligned_cols=72 Identities=18% Similarity=0.257 Sum_probs=59.5
Q ss_pred CCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEeeC
Q 047386 122 PPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDLD 201 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdLD 201 (581)
..+|||+.||||.+++.++... +..+|+++|+|+.+++.+++|+. +++++++|+..+.. ..+||+|+.+
T Consensus 65 ~grVLDLGcGsGilsl~la~r~-~~~~V~gVDisp~al~~Ar~n~~--------~v~~v~~D~~e~~~--~~kFDlIIsN 133 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRC-KPEKIVCVELNPEFARIGKRLLP--------EAEWITSDVFEFES--NEKFDVVISN 133 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhCc--------CCEEEECchhhhcc--cCCCcEEEEc
Confidence 3489999999999999998863 24689999999999999998742 35789999988763 3579999999
Q ss_pred C-CC
Q 047386 202 P-YG 204 (581)
Q Consensus 202 P-yG 204 (581)
| |+
T Consensus 134 PPF~ 137 (279)
T PHA03411 134 PPFG 137 (279)
T ss_pred CCcc
Confidence 8 54
No 100
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.45 E-value=9.8e-07 Score=90.13 Aligned_cols=104 Identities=28% Similarity=0.316 Sum_probs=84.4
Q ss_pred CCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHH-Hh-hCCCcccEE
Q 047386 121 KPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVY-ML-THPKEFDVV 198 (581)
Q Consensus 121 ~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~-l~-~~~~~fDvI 198 (581)
.|.+|||+-.|||.+++.+++-+..-.+|+..|++++-.+.+++|++.+++. +++++.+.|+..- .. .....||.|
T Consensus 40 pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~--~~v~~~~~Dv~~~g~~~~~~~~~Dav 117 (247)
T PF08704_consen 40 PGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLD--DNVTVHHRDVCEEGFDEELESDFDAV 117 (247)
T ss_dssp TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCC--TTEEEEES-GGCG--STT-TTSEEEE
T ss_pred CCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCC--CCceeEecceecccccccccCcccEE
Confidence 4779999999999999999987755679999999999999999999999996 6899999998632 21 123579999
Q ss_pred eeCCCCCChHhHHHHHHhc-cCCCeEEEEe
Q 047386 199 DLDPYGSPSVFLDSAIQSV-ADGGMLMCTA 227 (581)
Q Consensus 199 dLDPyGs~~~fld~A~~~l-~~gGlL~vTa 227 (581)
+||=+. |...|+.+.++| ++||.||+.+
T Consensus 118 fLDlp~-Pw~~i~~~~~~L~~~gG~i~~fs 146 (247)
T PF08704_consen 118 FLDLPD-PWEAIPHAKRALKKPGGRICCFS 146 (247)
T ss_dssp EEESSS-GGGGHHHHHHHE-EEEEEEEEEE
T ss_pred EEeCCC-HHHHHHHHHHHHhcCCceEEEEC
Confidence 999543 567899999999 8999999875
No 101
>PLN02672 methionine S-methyltransferase
Probab=98.45 E-value=1.3e-06 Score=104.47 Aligned_cols=82 Identities=20% Similarity=0.090 Sum_probs=67.7
Q ss_pred CCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCC-------------CCCcEEEEehhHHHH
Q 047386 121 KPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSV-------------ACSKVESHLADARVY 187 (581)
Q Consensus 121 ~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~-------------~~~~v~v~~~DA~~~ 187 (581)
.+.+|||+.||||..+|.++++.+ ..+|+++|+|+.|++.+++|+++|+++ ..++++++++|....
T Consensus 118 ~~~~VLDlG~GSG~Iai~La~~~~-~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~ 196 (1082)
T PLN02672 118 RDKTVAELGCGNGWISIAIAEKWL-PSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGY 196 (1082)
T ss_pred CCCEEEEEecchHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhh
Confidence 456899999999999999999754 358999999999999999999998753 114689999999887
Q ss_pred HhhCCCcccEEeeCCC
Q 047386 188 MLTHPKEFDVVDLDPY 203 (581)
Q Consensus 188 l~~~~~~fDvIdLDPy 203 (581)
+.....+||+|+-.|+
T Consensus 197 ~~~~~~~fDlIVSNPP 212 (1082)
T PLN02672 197 CRDNNIELDRIVGCIP 212 (1082)
T ss_pred ccccCCceEEEEECCC
Confidence 7432236999998873
No 102
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.42 E-value=1.8e-06 Score=84.67 Aligned_cols=97 Identities=18% Similarity=0.217 Sum_probs=76.3
Q ss_pred CCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEee
Q 047386 121 KPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDL 200 (581)
Q Consensus 121 ~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdL 200 (581)
.+.+|||+-||+|..++.++.. |. .|+++|+|+.+++.+++++..+++. ++++...|+..+-. ...||+|+.
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~--g~-~V~gvD~S~~~i~~a~~~~~~~~~~---~v~~~~~d~~~~~~--~~~fD~I~~ 101 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAAN--GF-DVTAWDKNPMSIANLERIKAAENLD---NLHTAVVDLNNLTF--DGEYDFILS 101 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHC--CC-EEEEEeCCHHHHHHHHHHHHHcCCC---cceEEecChhhCCc--CCCcCEEEE
Confidence 3568999999999999999883 54 7999999999999999999999874 57888899876522 357999864
Q ss_pred C-CC-C-C---ChHhHHHHHHhccCCCeEEE
Q 047386 201 D-PY-G-S---PSVFLDSAIQSVADGGMLMC 225 (581)
Q Consensus 201 D-Py-G-s---~~~fld~A~~~l~~gGlL~v 225 (581)
= .+ . . ...++....++|++||.+++
T Consensus 102 ~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 102 TVVLMFLEAKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred ecchhhCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 3 21 1 1 23677888899999998544
No 103
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.40 E-value=2.7e-06 Score=86.83 Aligned_cols=103 Identities=20% Similarity=0.264 Sum_probs=81.6
Q ss_pred CCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEee
Q 047386 121 KPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDL 200 (581)
Q Consensus 121 ~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdL 200 (581)
.+.+|||+-||+|..++.+++......+|+++|+++..++.+++|+..+++. ++++..+|+..+-. ....||+|+.
T Consensus 77 ~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~---~v~~~~~d~~~l~~-~~~~fD~Vi~ 152 (272)
T PRK11873 77 PGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYT---NVEFRLGEIEALPV-ADNSVDVIIS 152 (272)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCC---CEEEEEcchhhCCC-CCCceeEEEE
Confidence 4679999999999999887775322247999999999999999999998874 68899999865421 2357999987
Q ss_pred CC-C---CCChHhHHHHHHhccCCCeEEEEe
Q 047386 201 DP-Y---GSPSVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 201 DP-y---Gs~~~fld~A~~~l~~gGlL~vTa 227 (581)
+- + ......+..+.++|++||.|++..
T Consensus 153 ~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 153 NCVINLSPDKERVFKEAFRVLKPGGRFAISD 183 (272)
T ss_pred cCcccCCCCHHHHHHHHHHHcCCCcEEEEEE
Confidence 75 2 123467888999999999999863
No 104
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.39 E-value=2.6e-06 Score=90.13 Aligned_cols=100 Identities=23% Similarity=0.280 Sum_probs=80.2
Q ss_pred CCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEee
Q 047386 121 KPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDL 200 (581)
Q Consensus 121 ~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdL 200 (581)
++.+|||+.||||..++.+++..+....|+++|+++..++.+++|++.++++ ++.++++|+....... ..||+|++
T Consensus 80 ~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~---nV~~i~gD~~~~~~~~-~~fD~Ii~ 155 (322)
T PRK13943 80 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIE---NVIFVCGDGYYGVPEF-APYDVIFV 155 (322)
T ss_pred CCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCC---cEEEEeCChhhccccc-CCccEEEE
Confidence 3569999999999999999986432347999999999999999999999974 6889999987765432 46999999
Q ss_pred CCCCCChHhHHHHHHhccCCCeEEEE
Q 047386 201 DPYGSPSVFLDSAIQSVADGGMLMCT 226 (581)
Q Consensus 201 DPyGs~~~fld~A~~~l~~gGlL~vT 226 (581)
+. +. ....+..++.|++||.|.+.
T Consensus 156 ~~-g~-~~ip~~~~~~LkpgG~Lvv~ 179 (322)
T PRK13943 156 TV-GV-DEVPETWFTQLKEGGRVIVP 179 (322)
T ss_pred CC-ch-HHhHHHHHHhcCCCCEEEEE
Confidence 84 32 13345567889999998875
No 105
>PLN02244 tocopherol O-methyltransferase
Probab=98.38 E-value=2e-06 Score=91.33 Aligned_cols=101 Identities=20% Similarity=0.245 Sum_probs=82.5
Q ss_pred CCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEee-
Q 047386 122 PPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDL- 200 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdL- 200 (581)
+.+|||+.||+|..++.++... | .+|+++|+|+..++.++++++.+++. +++++.++|+..+-. ....||+|+.
T Consensus 119 ~~~VLDiGCG~G~~~~~La~~~-g-~~v~gvD~s~~~i~~a~~~~~~~g~~--~~v~~~~~D~~~~~~-~~~~FD~V~s~ 193 (340)
T PLN02244 119 PKRIVDVGCGIGGSSRYLARKY-G-ANVKGITLSPVQAARANALAAAQGLS--DKVSFQVADALNQPF-EDGQFDLVWSM 193 (340)
T ss_pred CCeEEEecCCCCHHHHHHHHhc-C-CEEEEEECCHHHHHHHHHHHHhcCCC--CceEEEEcCcccCCC-CCCCccEEEEC
Confidence 5689999999999999998853 4 47999999999999999999999885 579999999976422 2468999976
Q ss_pred CC---CCCChHhHHHHHHhccCCCeEEEEe
Q 047386 201 DP---YGSPSVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 201 DP---yGs~~~fld~A~~~l~~gGlL~vTa 227 (581)
+- +.....++..+.+.|++||.|+++.
T Consensus 194 ~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 194 ESGEHMPDKRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred CchhccCCHHHHHHHHHHHcCCCcEEEEEE
Confidence 32 2234568888899999999999864
No 106
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.36 E-value=4.9e-06 Score=89.98 Aligned_cols=109 Identities=19% Similarity=0.247 Sum_probs=88.6
Q ss_pred CCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhC-CCcccEEe
Q 047386 121 KPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTH-PKEFDVVD 199 (581)
Q Consensus 121 ~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~-~~~fDvId 199 (581)
.+..+||+-||+|.+.+.+|...|+ ..++++|+++.+++.+.+++..+++. ++.++++||..++... ...||.|.
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~-~~~iGIEI~~~~i~~a~~ka~~~gL~---NV~~i~~DA~~ll~~~~~~s~D~I~ 197 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPN-KLFIGIEIHTPSIEQVLKQIELLNLK---NLLIINYDARLLLELLPSNSVEKIF 197 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCC-CCEEEEECCHHHHHHHHHHHHHcCCC---cEEEEECCHHHhhhhCCCCceeEEE
Confidence 3568999999999999999998665 47999999999999999999999984 6999999998876432 46799997
Q ss_pred e---CCC-CCC------hHhHHHHHHhccCCCeEEEEeccchhhc
Q 047386 200 L---DPY-GSP------SVFLDSAIQSVADGGMLMCTATDMAVLC 234 (581)
Q Consensus 200 L---DPy-Gs~------~~fld~A~~~l~~gGlL~vTaTD~a~Lc 234 (581)
+ ||. ... ..|++.+.+.|++||.|.+. ||...+.
T Consensus 198 lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~-TD~~~y~ 241 (390)
T PRK14121 198 VHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELR-TDSELYF 241 (390)
T ss_pred EeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEE-EECHHHH
Confidence 6 553 111 47999999999999999886 4544443
No 107
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.36 E-value=2.5e-06 Score=83.99 Aligned_cols=98 Identities=20% Similarity=0.227 Sum_probs=78.1
Q ss_pred CCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEee
Q 047386 121 KPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDL 200 (581)
Q Consensus 121 ~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdL 200 (581)
.+.+|||+.||||..+..++.. ..+|+++|+++.+++.+++|++.+++. ++++.++|+...+.. ...||+|++
T Consensus 78 ~~~~VLeiG~GsG~~t~~la~~---~~~v~~vd~~~~~~~~a~~~~~~~~~~---~v~~~~~d~~~~~~~-~~~fD~I~~ 150 (212)
T PRK00312 78 PGDRVLEIGTGSGYQAAVLAHL---VRRVFSVERIKTLQWEAKRRLKQLGLH---NVSVRHGDGWKGWPA-YAPFDRILV 150 (212)
T ss_pred CCCEEEEECCCccHHHHHHHHH---hCEEEEEeCCHHHHHHHHHHHHHCCCC---ceEEEECCcccCCCc-CCCcCEEEE
Confidence 4569999999999999866653 248999999999999999999999874 589999998654322 357999999
Q ss_pred CCCCCChHhHHHHHHhccCCCeEEEEe
Q 047386 201 DPYGSPSVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 201 DPyGs~~~fld~A~~~l~~gGlL~vTa 227 (581)
+... ..+.....+.|++||.|++..
T Consensus 151 ~~~~--~~~~~~l~~~L~~gG~lv~~~ 175 (212)
T PRK00312 151 TAAA--PEIPRALLEQLKEGGILVAPV 175 (212)
T ss_pred ccCc--hhhhHHHHHhcCCCcEEEEEE
Confidence 9732 234456678899999998864
No 108
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.34 E-value=2.7e-06 Score=83.25 Aligned_cols=97 Identities=15% Similarity=0.156 Sum_probs=74.5
Q ss_pred CCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEeeC
Q 047386 122 PPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDLD 201 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdLD 201 (581)
+.+|||+-||+|..++.++. +| ..|+++|+|+.+++.++++++.+++. +.....|+..+- ....||+|+.-
T Consensus 31 ~~~vLDiGcG~G~~a~~la~--~g-~~V~~iD~s~~~l~~a~~~~~~~~~~----v~~~~~d~~~~~--~~~~fD~I~~~ 101 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSL--AG-YDVRAWDHNPASIASVLDMKARENLP----LRTDAYDINAAA--LNEDYDFIFST 101 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHH--CC-CeEEEEECCHHHHHHHHHHHHHhCCC----ceeEeccchhcc--ccCCCCEEEEe
Confidence 55899999999999999997 46 47999999999999999999988874 566777765332 13479998764
Q ss_pred -CCCC-----ChHhHHHHHHhccCCCeE-EEEe
Q 047386 202 -PYGS-----PSVFLDSAIQSVADGGML-MCTA 227 (581)
Q Consensus 202 -PyGs-----~~~fld~A~~~l~~gGlL-~vTa 227 (581)
++.. ...++..+.++|++||+| +++.
T Consensus 102 ~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~ 134 (195)
T TIGR00477 102 VVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAA 134 (195)
T ss_pred cccccCCHHHHHHHHHHHHHHhCCCcEEEEEEe
Confidence 3421 135777888999999984 4443
No 109
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.30 E-value=5e-06 Score=84.74 Aligned_cols=104 Identities=26% Similarity=0.277 Sum_probs=90.5
Q ss_pred CCCCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEE
Q 047386 119 QLKPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVV 198 (581)
Q Consensus 119 ~~~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvI 198 (581)
-..+.+|||+-.|||.++...|.-+....+|+..|+.++-.+.+++|++.-++. ++++...+|+...... +.||.|
T Consensus 92 i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~--d~v~~~~~Dv~~~~~~--~~vDav 167 (256)
T COG2519 92 ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLG--DRVTLKLGDVREGIDE--EDVDAV 167 (256)
T ss_pred CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccc--cceEEEeccccccccc--cccCEE
Confidence 346789999999999999999976555689999999999999999999999886 5689999999888753 489999
Q ss_pred eeCCCCCChHhHHHHHHhccCCCeEEEEe
Q 047386 199 DLDPYGSPSVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 199 dLDPyGs~~~fld~A~~~l~~gGlL~vTa 227 (581)
+||=+. |..+++.+-.+|++||.+++.+
T Consensus 168 ~LDmp~-PW~~le~~~~~Lkpgg~~~~y~ 195 (256)
T COG2519 168 FLDLPD-PWNVLEHVSDALKPGGVVVVYS 195 (256)
T ss_pred EEcCCC-hHHHHHHHHHHhCCCcEEEEEc
Confidence 999643 5689999999999999999875
No 110
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.30 E-value=3.9e-06 Score=86.88 Aligned_cols=97 Identities=19% Similarity=0.209 Sum_probs=75.9
Q ss_pred CCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEee
Q 047386 121 KPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDL 200 (581)
Q Consensus 121 ~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdL 200 (581)
.+.+|||+-||+|..++.+++. | .+|+++|+|+.+++.+++|++.+++. +++...|+...-. ...||+|+.
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~--g-~~V~avD~s~~ai~~~~~~~~~~~l~----v~~~~~D~~~~~~--~~~fD~I~~ 190 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALL--G-FDVTAVDINQQSLENLQEIAEKENLN----IRTGLYDINSASI--QEEYDFILS 190 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHC--C-CEEEEEECCHHHHHHHHHHHHHcCCc----eEEEEechhcccc--cCCccEEEE
Confidence 3458999999999999999884 6 47999999999999999999998873 6778888765422 467999975
Q ss_pred CC-C--CC---ChHhHHHHHHhccCCCeEEEE
Q 047386 201 DP-Y--GS---PSVFLDSAIQSVADGGMLMCT 226 (581)
Q Consensus 201 DP-y--Gs---~~~fld~A~~~l~~gGlL~vT 226 (581)
-- + -. ...++....+.|++||++.+.
T Consensus 191 ~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v 222 (287)
T PRK12335 191 TVVLMFLNRERIPAIIKNMQEHTNPGGYNLIV 222 (287)
T ss_pred cchhhhCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 53 1 11 235677778899999996653
No 111
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=98.29 E-value=1.9e-06 Score=87.17 Aligned_cols=102 Identities=25% Similarity=0.297 Sum_probs=72.8
Q ss_pred CCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEeeC
Q 047386 122 PPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDLD 201 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdLD 201 (581)
+.+|||+.||||..++.+++.++.-.+|+++|+|+.-++..++.+...+.. ++++.++||..+=. ....||+|.+=
T Consensus 48 g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~---~i~~v~~da~~lp~-~d~sfD~v~~~ 123 (233)
T PF01209_consen 48 GDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQ---NIEFVQGDAEDLPF-PDNSFDAVTCS 123 (233)
T ss_dssp --EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT-----SEEEEE-BTTB--S--TT-EEEEEEE
T ss_pred CCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCC---CeeEEEcCHHHhcC-CCCceeEEEHH
Confidence 569999999999999999987543458999999999999999999988863 79999999977643 24689999642
Q ss_pred C----CCCChHhHHHHHHhccCCCeEEEEe
Q 047386 202 P----YGSPSVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 202 P----yGs~~~fld~A~~~l~~gGlL~vTa 227 (581)
= +......+....+.|++||.|+|.-
T Consensus 124 fglrn~~d~~~~l~E~~RVLkPGG~l~ile 153 (233)
T PF01209_consen 124 FGLRNFPDRERALREMYRVLKPGGRLVILE 153 (233)
T ss_dssp S-GGG-SSHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhHHhhCCHHHHHHHHHHHcCCCeEEEEee
Confidence 1 1123456777889999999988753
No 112
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.29 E-value=4.4e-06 Score=96.81 Aligned_cols=109 Identities=17% Similarity=0.163 Sum_probs=79.5
Q ss_pred CCeEEEecCcccHHHHHHhhhc----CC-------------------------------------ccEEEEEeCCHHHHH
Q 047386 122 PPRVLEALSASGLRALRYAREV----EG-------------------------------------IGQVVALDNDKASVE 160 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~----~G-------------------------------------a~~V~anD~s~~Ave 160 (581)
+..++|.|||||.+.|++|.-. || ..+|+++|+|+.|++
T Consensus 191 ~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av~ 270 (702)
T PRK11783 191 GTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVIQ 270 (702)
T ss_pred CCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHHH
Confidence 5689999999999999998631 11 126999999999999
Q ss_pred HHHHHHHHhCCCCCCcEEEEehhHHHHHhhC-CCcccEEeeCC-CCCCh---HhH-------HHHHHhccCCCeEEEEec
Q 047386 161 ACRRNIKFNGSVACSKVESHLADARVYMLTH-PKEFDVVDLDP-YGSPS---VFL-------DSAIQSVADGGMLMCTAT 228 (581)
Q Consensus 161 ~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~-~~~fDvIdLDP-yGs~~---~fl-------d~A~~~l~~gGlL~vTaT 228 (581)
.+++|++.+|+. +.+++.++|+..+.... ...||+|+.+| ||... .-+ ...++-..+|+-+++-+.
T Consensus 271 ~A~~N~~~~g~~--~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~llt~ 348 (702)
T PRK11783 271 AARKNARRAGVA--ELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNAALFSS 348 (702)
T ss_pred HHHHHHHHcCCC--cceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 999999999996 67899999998874321 24699999997 76522 111 112333347777766665
Q ss_pred cchh
Q 047386 229 DMAV 232 (581)
Q Consensus 229 D~a~ 232 (581)
|...
T Consensus 349 ~~~l 352 (702)
T PRK11783 349 SPEL 352 (702)
T ss_pred CHHH
Confidence 5543
No 113
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.29 E-value=9e-06 Score=80.80 Aligned_cols=100 Identities=25% Similarity=0.388 Sum_probs=81.3
Q ss_pred CCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEee
Q 047386 121 KPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDL 200 (581)
Q Consensus 121 ~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdL 200 (581)
.+.+|||+.||+|..++.+++. ++ .|+++|+|+.+++.+++|+..+++ .+.+...|+..+.......||+|++
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~--~~-~v~~iD~s~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~~~~~~~fD~Ii~ 120 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARL--GA-DVTGIDASEENIEVARLHALESGL----KIDYRQTTAEELAAEHPGQFDVVTC 120 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHc--CC-eEEEEcCCHHHHHHHHHHHHHcCC----ceEEEecCHHHhhhhcCCCccEEEE
Confidence 4678999999999999999874 54 699999999999999999988775 3677888888776444468999987
Q ss_pred CC----CCCChHhHHHHHHhccCCCeEEEEe
Q 047386 201 DP----YGSPSVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 201 DP----yGs~~~fld~A~~~l~~gGlL~vTa 227 (581)
.- ...+..++..+.+.|++||.|+++.
T Consensus 121 ~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~ 151 (233)
T PRK05134 121 MEMLEHVPDPASFVRACAKLVKPGGLVFFST 151 (233)
T ss_pred hhHhhccCCHHHHHHHHHHHcCCCcEEEEEe
Confidence 53 2334577888899999999999874
No 114
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.27 E-value=5.5e-06 Score=81.73 Aligned_cols=99 Identities=18% Similarity=0.180 Sum_probs=80.9
Q ss_pred eEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEeeCC-
Q 047386 124 RVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDLDP- 202 (581)
Q Consensus 124 ~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdLDP- 202 (581)
+|||+-||+|..++.++...++ ..|+++|+|+..++.+++++...++. +++++..+|+..... ...||+|..-=
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~-~~v~gid~s~~~~~~a~~~~~~~gl~--~~i~~~~~d~~~~~~--~~~fD~I~~~~~ 76 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPH-LQLHGYTISPEQAEVGRERIRALGLQ--GRIRIFYRDSAKDPF--PDTYDLVFGFEV 76 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHhcCCC--cceEEEecccccCCC--CCCCCEeehHHH
Confidence 6999999999999999987544 47999999999999999999998886 678999999854422 35799997421
Q ss_pred ---CCCChHhHHHHHHhccCCCeEEEEe
Q 047386 203 ---YGSPSVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 203 ---yGs~~~fld~A~~~l~~gGlL~vTa 227 (581)
......++..+.+.|++||.|+++.
T Consensus 77 l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 104 (224)
T smart00828 77 IHHIKDKMDLFSNISRHLKDGGHLVLAD 104 (224)
T ss_pred HHhCCCHHHHHHHHHHHcCCCCEEEEEE
Confidence 2334578888999999999999874
No 115
>PRK04266 fibrillarin; Provisional
Probab=98.27 E-value=2.8e-05 Score=78.36 Aligned_cols=99 Identities=24% Similarity=0.196 Sum_probs=74.8
Q ss_pred CCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHh--hCCCcccEEe
Q 047386 122 PPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYML--THPKEFDVVD 199 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~--~~~~~fDvId 199 (581)
+.+|||+-||||..++.++..++ -..|+++|+++.+++.+.++++.. .++.++.+|+..... .....||+|+
T Consensus 73 g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~-----~nv~~i~~D~~~~~~~~~l~~~~D~i~ 146 (226)
T PRK04266 73 GSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEER-----KNIIPILADARKPERYAHVVEKVDVIY 146 (226)
T ss_pred CCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhc-----CCcEEEECCCCCcchhhhccccCCEEE
Confidence 56899999999999999998653 458999999999999888887742 257888999864210 1124699999
Q ss_pred eCCCCC--ChHhHHHHHHhccCCCeEEEE
Q 047386 200 LDPYGS--PSVFLDSAIQSVADGGMLMCT 226 (581)
Q Consensus 200 LDPyGs--~~~fld~A~~~l~~gGlL~vT 226 (581)
.|-... ...++..+.+.|++||.|+|+
T Consensus 147 ~d~~~p~~~~~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 147 QDVAQPNQAEIAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred ECCCChhHHHHHHHHHHHhcCCCcEEEEE
Confidence 873211 123467788899999999996
No 116
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=98.26 E-value=6.4e-06 Score=83.74 Aligned_cols=101 Identities=29% Similarity=0.388 Sum_probs=82.6
Q ss_pred CCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEee
Q 047386 121 KPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDL 200 (581)
Q Consensus 121 ~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdL 200 (581)
+|.+|||+.||||-.++++++.. |-.+|+++|+|+..++..++=+..-+.. .++++++||..+-. ....||+|.+
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~-g~g~v~~~D~s~~ML~~a~~k~~~~~~~---~i~fv~~dAe~LPf-~D~sFD~vt~ 125 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSV-GTGEVVGLDISESMLEVAREKLKKKGVQ---NVEFVVGDAENLPF-PDNSFDAVTI 125 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhc-CCceEEEEECCHHHHHHHHHHhhccCcc---ceEEEEechhhCCC-CCCccCEEEe
Confidence 47799999999999999999986 4679999999999999999998876664 38999999988764 3568999976
Q ss_pred CCCCC-----ChHhHHHHHHhccCCCeEEEEe
Q 047386 201 DPYGS-----PSVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 201 DPyGs-----~~~fld~A~~~l~~gGlL~vTa 227 (581)
.= |. ....|..+.+.|++||.|++..
T Consensus 126 ~f-glrnv~d~~~aL~E~~RVlKpgG~~~vle 156 (238)
T COG2226 126 SF-GLRNVTDIDKALKEMYRVLKPGGRLLVLE 156 (238)
T ss_pred ee-hhhcCCCHHHHHHHHHHhhcCCeEEEEEE
Confidence 53 22 2345666778999999888764
No 117
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=98.24 E-value=6.9e-06 Score=84.12 Aligned_cols=103 Identities=17% Similarity=0.159 Sum_probs=77.3
Q ss_pred CCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHH--hCCCCCCcEEEEehhHHHHHhhCCCcccEEe
Q 047386 122 PPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKF--NGSVACSKVESHLADARVYMLTHPKEFDVVD 199 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~--N~~~~~~~v~v~~~DA~~~l~~~~~~fDvId 199 (581)
+.+|||+.||||..++.++...+.-..|+++|+|+..++.++++... .+.. .+++++++|+..+-. ....||+|.
T Consensus 74 ~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~--~~i~~~~~d~~~lp~-~~~sfD~V~ 150 (261)
T PLN02233 74 GDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCY--KNIEWIEGDATDLPF-DDCYFDAIT 150 (261)
T ss_pred CCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccC--CCeEEEEcccccCCC-CCCCEeEEE
Confidence 56899999999999988887542234899999999999999887642 2221 468999999876522 235799997
Q ss_pred eCC----CCCChHhHHHHHHhccCCCeEEEEe
Q 047386 200 LDP----YGSPSVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 200 LDP----yGs~~~fld~A~~~l~~gGlL~vTa 227 (581)
+-= ...+..++..+.+.|++||.|++.-
T Consensus 151 ~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d 182 (261)
T PLN02233 151 MGYGLRNVVDRLKAMQEMYRVLKPGSRVSILD 182 (261)
T ss_pred EecccccCCCHHHHHHHHHHHcCcCcEEEEEE
Confidence 631 1224568888899999999998863
No 118
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.22 E-value=1.7e-06 Score=87.17 Aligned_cols=102 Identities=21% Similarity=0.260 Sum_probs=83.3
Q ss_pred CCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCC-CcccEEe
Q 047386 121 KPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHP-KEFDVVD 199 (581)
Q Consensus 121 ~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~-~~fDvId 199 (581)
.+.+|||.+-|-|-.+|+++. +||.+|+.++.||..++++.-|==.-++.. ..++++.|||..+..... +.||+|+
T Consensus 134 ~G~rVLDtC~GLGYtAi~a~~--rGA~~VitvEkdp~VLeLa~lNPwSr~l~~-~~i~iilGD~~e~V~~~~D~sfDaIi 210 (287)
T COG2521 134 RGERVLDTCTGLGYTAIEALE--RGAIHVITVEKDPNVLELAKLNPWSRELFE-IAIKIILGDAYEVVKDFDDESFDAII 210 (287)
T ss_pred cCCEeeeeccCccHHHHHHHH--cCCcEEEEEeeCCCeEEeeccCCCCccccc-cccEEecccHHHHHhcCCccccceEe
Confidence 578999999999999999999 699999999999999999866544334432 368999999999998754 5699999
Q ss_pred eCCCCC-------ChHhHHHHHHhccCCCeEEE
Q 047386 200 LDPYGS-------PSVFLDSAIQSVADGGMLMC 225 (581)
Q Consensus 200 LDPyGs-------~~~fld~A~~~l~~gGlL~v 225 (581)
-||+-. ...|.+.-.+.|++||-|.=
T Consensus 211 HDPPRfS~AgeLYseefY~El~RiLkrgGrlFH 243 (287)
T COG2521 211 HDPPRFSLAGELYSEEFYRELYRILKRGGRLFH 243 (287)
T ss_pred eCCCccchhhhHhHHHHHHHHHHHcCcCCcEEE
Confidence 999633 23677888899999886644
No 119
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.22 E-value=8.1e-06 Score=80.30 Aligned_cols=102 Identities=24% Similarity=0.274 Sum_probs=81.5
Q ss_pred CCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEeeC
Q 047386 122 PPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDLD 201 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdLD 201 (581)
+.+|||+.||+|..++.++...+...+|+++|+++.+++.+++|+..+++. .++.+..+|+..+.. ....||+|++.
T Consensus 52 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~--~~~~~~~~d~~~~~~-~~~~~D~I~~~ 128 (239)
T PRK00216 52 GDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLS--GNVEFVQGDAEALPF-PDNSFDAVTIA 128 (239)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccc--cCeEEEecccccCCC-CCCCccEEEEe
Confidence 468999999999999999886422478999999999999999999887664 468889999876542 23579999864
Q ss_pred C----CCCChHhHHHHHHhccCCCeEEEE
Q 047386 202 P----YGSPSVFLDSAIQSVADGGMLMCT 226 (581)
Q Consensus 202 P----yGs~~~fld~A~~~l~~gGlL~vT 226 (581)
- +..+..++..+.++|++||.|++.
T Consensus 129 ~~l~~~~~~~~~l~~~~~~L~~gG~li~~ 157 (239)
T PRK00216 129 FGLRNVPDIDKALREMYRVLKPGGRLVIL 157 (239)
T ss_pred cccccCCCHHHHHHHHHHhccCCcEEEEE
Confidence 2 223457888899999999988774
No 120
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.21 E-value=8.2e-06 Score=82.63 Aligned_cols=100 Identities=24% Similarity=0.373 Sum_probs=78.4
Q ss_pred CCeEEEecCcccHHHHHHhhhc--CCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEe
Q 047386 122 PPRVLEALSASGLRALRYAREV--EGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVD 199 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~--~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvId 199 (581)
+.+|||+-||+|..++.++..+ ++ .+|+++|+|+.+++.+++|+..++.. .+++++++|+..+.. ..||+|.
T Consensus 57 ~~~vLDlGcGtG~~~~~l~~~~~~~~-~~v~gvD~S~~ml~~A~~~~~~~~~~--~~v~~~~~d~~~~~~---~~~D~vv 130 (247)
T PRK15451 57 GTQVYDLGCSLGAATLSVRRNIHHDN-CKIIAIDNSPAMIERCRRHIDAYKAP--TPVDVIEGDIRDIAI---ENASMVV 130 (247)
T ss_pred CCEEEEEcccCCHHHHHHHHhcCCCC-CeEEEEeCCHHHHHHHHHHHHhcCCC--CCeEEEeCChhhCCC---CCCCEEe
Confidence 4689999999999998877632 33 47999999999999999999988875 578999999876532 3589887
Q ss_pred eCC---CCC---ChHhHHHHHHhccCCCeEEEEe
Q 047386 200 LDP---YGS---PSVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 200 LDP---yGs---~~~fld~A~~~l~~gGlL~vTa 227 (581)
+-- +-. ...++....+.|++||.|+++-
T Consensus 131 ~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 131 LNFTLQFLEPSERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred hhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 642 111 1356777888999999999963
No 121
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=98.20 E-value=5.4e-06 Score=89.37 Aligned_cols=105 Identities=26% Similarity=0.307 Sum_probs=85.2
Q ss_pred CCCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhh-CCCcccEE
Q 047386 120 LKPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLT-HPKEFDVV 198 (581)
Q Consensus 120 ~~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~-~~~~fDvI 198 (581)
.++.||||+.|+-|+-....|.-..+-..|+|||.|..-++.++.|+...|+. +..+.+.|...+-.. ....||-|
T Consensus 240 q~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~---ntiv~n~D~~ef~~~~~~~~fDRV 316 (460)
T KOG1122|consen 240 QPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVT---NTIVSNYDGREFPEKEFPGSFDRV 316 (460)
T ss_pred CCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCC---ceEEEccCcccccccccCccccee
Confidence 46789999999999988887765556678999999999999999999999985 567888898765322 23379999
Q ss_pred eeCCCCCC--h------------------------HhHHHHHHhccCCCeEEEEe
Q 047386 199 DLDPYGSP--S------------------------VFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 199 dLDPyGs~--~------------------------~fld~A~~~l~~gGlL~vTa 227 (581)
.||-+-|. . .+|++|+++|+.||+|..+.
T Consensus 317 LLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYST 371 (460)
T KOG1122|consen 317 LLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYST 371 (460)
T ss_pred eecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEe
Confidence 99976332 1 57889999999999988765
No 122
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.20 E-value=6.6e-06 Score=88.38 Aligned_cols=103 Identities=22% Similarity=0.244 Sum_probs=78.6
Q ss_pred CeEEEecCcccHHHHHHhhhcCCc----c----------------------------------EEEEEeCCHHHHHHHHH
Q 047386 123 PRVLEALSASGLRALRYAREVEGI----G----------------------------------QVVALDNDKASVEACRR 164 (581)
Q Consensus 123 ~~VLDafsgSG~rgIr~a~E~~Ga----~----------------------------------~V~anD~s~~Ave~i~~ 164 (581)
..++|.|||||.+.|++|.-.+++ . .+++.|+|+..++.++.
T Consensus 193 ~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~ 272 (381)
T COG0116 193 EPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAKA 272 (381)
T ss_pred CccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHHH
Confidence 479999999999999999853221 1 37799999999999999
Q ss_pred HHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEeeCC-CCC----C--h-----HhHHHHHHhccCCCeEEEEec
Q 047386 165 NIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDLDP-YGS----P--S-----VFLDSAIQSVADGGMLMCTAT 228 (581)
Q Consensus 165 Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdLDP-yGs----~--~-----~fld~A~~~l~~gGlL~vTaT 228 (581)
|++.-|+. +.|++.++|+..+-... +.||+|+.+| ||- . . .|.+..-+.+..-+..++|+.
T Consensus 273 NA~~AGv~--d~I~f~~~d~~~l~~~~-~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt~ 345 (381)
T COG0116 273 NARAAGVG--DLIEFKQADATDLKEPL-EEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTTS 345 (381)
T ss_pred HHHhcCCC--ceEEEEEcchhhCCCCC-CcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEcc
Confidence 99999997 78999999998875432 6899999998 764 2 1 233333355655566666653
No 123
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.19 E-value=8.8e-06 Score=83.69 Aligned_cols=79 Identities=20% Similarity=0.199 Sum_probs=64.5
Q ss_pred CCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEeh----hHHHHHhhCCCccc
Q 047386 121 KPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLA----DARVYMLTHPKEFD 196 (581)
Q Consensus 121 ~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~----DA~~~l~~~~~~fD 196 (581)
++..+||+++|||..||-.++.++ -..|+|+|.|+.|+.++.+|++.+++. +.+++++- |+..-......++|
T Consensus 148 ~~~~ildlgtGSGaIslsll~~L~-~~~v~AiD~S~~Ai~La~eN~qr~~l~--g~i~v~~~~me~d~~~~~~l~~~~~d 224 (328)
T KOG2904|consen 148 KHTHILDLGTGSGAISLSLLHGLP-QCTVTAIDVSKAAIKLAKENAQRLKLS--GRIEVIHNIMESDASDEHPLLEGKID 224 (328)
T ss_pred ccceEEEecCCccHHHHHHHhcCC-CceEEEEeccHHHHHHHHHHHHHHhhc--CceEEEecccccccccccccccCcee
Confidence 455799999999999999999886 467999999999999999999999997 78888854 44322211236899
Q ss_pred EEeeCC
Q 047386 197 VVDLDP 202 (581)
Q Consensus 197 vIdLDP 202 (581)
+|.-.|
T Consensus 225 llvsNP 230 (328)
T KOG2904|consen 225 LLVSNP 230 (328)
T ss_pred EEecCC
Confidence 999998
No 124
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.18 E-value=1.9e-05 Score=77.70 Aligned_cols=101 Identities=25% Similarity=0.335 Sum_probs=82.1
Q ss_pred CCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEee
Q 047386 121 KPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDL 200 (581)
Q Consensus 121 ~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdL 200 (581)
.+.+|||+.||+|.+++.+++. +. .|+++|+|+..++.+++|+..+++. ++.+.++|+..+.......||+|.+
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~--~~-~v~~iD~s~~~~~~a~~~~~~~~~~---~~~~~~~d~~~~~~~~~~~~D~i~~ 118 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARL--GA-NVTGIDASEENIEVAKLHAKKDPLL---KIEYRCTSVEDLAEKGAKSFDVVTC 118 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhc--CC-eEEEEeCCHHHHHHHHHHHHHcCCC---ceEEEeCCHHHhhcCCCCCccEEEe
Confidence 3668999999999999988873 54 5999999999999999999988762 4788889988776433468999987
Q ss_pred CC----CCCChHhHHHHHHhccCCCeEEEEe
Q 047386 201 DP----YGSPSVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 201 DP----yGs~~~fld~A~~~l~~gGlL~vTa 227 (581)
.- ...+..++..+.+.|++||.++++.
T Consensus 119 ~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~ 149 (224)
T TIGR01983 119 MEVLEHVPDPQAFIRACAQLLKPGGILFFST 149 (224)
T ss_pred hhHHHhCCCHHHHHHHHHHhcCCCcEEEEEe
Confidence 53 2345678888899999999988864
No 125
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=98.16 E-value=1e-05 Score=81.80 Aligned_cols=95 Identities=15% Similarity=0.230 Sum_probs=75.9
Q ss_pred CCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEeeC
Q 047386 122 PPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDLD 201 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdLD 201 (581)
+.+|||+-||+|..++.++...++ .+|+++|+|+..++.+++++. ++.++.+|+..+.. ...||+|+..
T Consensus 32 ~~~vLDiGcG~G~~~~~la~~~~~-~~v~gvD~s~~~i~~a~~~~~--------~~~~~~~d~~~~~~--~~~fD~v~~~ 100 (258)
T PRK01683 32 PRYVVDLGCGPGNSTELLVERWPA-ARITGIDSSPAMLAEARSRLP--------DCQFVEADIASWQP--PQALDLIFAN 100 (258)
T ss_pred CCEEEEEcccCCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHhCC--------CCeEEECchhccCC--CCCccEEEEc
Confidence 468999999999999999886543 589999999999999988742 35788899876642 3589999887
Q ss_pred C-C---CCChHhHHHHHHhccCCCeEEEEe
Q 047386 202 P-Y---GSPSVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 202 P-y---Gs~~~fld~A~~~l~~gGlL~vTa 227 (581)
. + .....++....++|++||.|.++.
T Consensus 101 ~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 101 ASLQWLPDHLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred cChhhCCCHHHHHHHHHHhcCCCcEEEEEC
Confidence 6 2 123467888889999999999873
No 126
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.15 E-value=3.1e-06 Score=88.04 Aligned_cols=106 Identities=20% Similarity=0.225 Sum_probs=76.4
Q ss_pred CCCeEEEecCcccHHHHHHhhhc------CCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhC-CC
Q 047386 121 KPPRVLEALSASGLRALRYAREV------EGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTH-PK 193 (581)
Q Consensus 121 ~~~~VLDafsgSG~rgIr~a~E~------~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~-~~ 193 (581)
.+.+|||..||||.+-+.+...+ ..-..++++|+++.++.+++-|+.++++.. ....+.++|........ ..
T Consensus 46 ~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~-~~~~i~~~d~l~~~~~~~~~ 124 (311)
T PF02384_consen 46 KGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDN-SNINIIQGDSLENDKFIKNQ 124 (311)
T ss_dssp TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHC-BGCEEEES-TTTSHSCTST-
T ss_pred ccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccc-cccccccccccccccccccc
Confidence 35589999999999988887632 124579999999999999999999988752 33458888875443322 36
Q ss_pred cccEEeeCC-CCCC------------------------hHhHHHHHHhccCCCeEEEEe
Q 047386 194 EFDVVDLDP-YGSP------------------------SVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 194 ~fDvIdLDP-yGs~------------------------~~fld~A~~~l~~gGlL~vTa 227 (581)
+||+|+..| ||.. ..|+..+++.|++||.+.+--
T Consensus 125 ~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Il 183 (311)
T PF02384_consen 125 KFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIIL 183 (311)
T ss_dssp -EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEe
Confidence 899999998 6653 048888999999999876654
No 127
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.14 E-value=3.7e-06 Score=92.69 Aligned_cols=100 Identities=23% Similarity=0.297 Sum_probs=76.0
Q ss_pred CCCeEEEecCcccHHHHHHhhh---cCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccE
Q 047386 121 KPPRVLEALSASGLRALRYARE---VEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDV 197 (581)
Q Consensus 121 ~~~~VLDafsgSG~rgIr~a~E---~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDv 197 (581)
++..|||+-||+|+++.++++- ..++.+|+|++.|+.|+..+++-++.|+.. ++|+++++|.+.+-. +++.|+
T Consensus 186 ~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~--~~V~vi~~d~r~v~l--pekvDI 261 (448)
T PF05185_consen 186 KDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWG--DKVTVIHGDMREVEL--PEKVDI 261 (448)
T ss_dssp TT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTT--TTEEEEES-TTTSCH--SS-EEE
T ss_pred cceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCC--CeEEEEeCcccCCCC--CCceeE
Confidence 3578999999999998766552 345789999999999999999888999996 789999999987754 468999
Q ss_pred EeeCCCCC---C---hHhHHHHHHhccCCCeEE
Q 047386 198 VDLDPYGS---P---SVFLDSAIQSVADGGMLM 224 (581)
Q Consensus 198 IdLDPyGs---~---~~fld~A~~~l~~gGlL~ 224 (581)
|+-...|+ . -.-|+++-+.|++||+++
T Consensus 262 IVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 262 IVSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp EEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred EEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 98777554 1 145788888999998865
No 128
>PLN03075 nicotianamine synthase; Provisional
Probab=98.13 E-value=1.7e-05 Score=83.08 Aligned_cols=104 Identities=21% Similarity=0.173 Sum_probs=81.2
Q ss_pred CCCeEEEecCccc-HHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHH-hCCCCCCcEEEEehhHHHHHhhCCCcccEE
Q 047386 121 KPPRVLEALSASG-LRALRYAREVEGIGQVVALDNDKASVEACRRNIKF-NGSVACSKVESHLADARVYMLTHPKEFDVV 198 (581)
Q Consensus 121 ~~~~VLDafsgSG-~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~-N~~~~~~~v~v~~~DA~~~l~~~~~~fDvI 198 (581)
.+.+|||+-||.| ..+|-++.......+++.+|+|+++++.+++++.. .++. +++++..+|+..+... ...||+|
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~--~rV~F~~~Da~~~~~~-l~~FDlV 199 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLS--KRMFFHTADVMDVTES-LKEYDVV 199 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCcc--CCcEEEECchhhcccc-cCCcCEE
Confidence 5679999999955 55776665432345799999999999999999964 6775 6799999999876422 3579999
Q ss_pred eeCC--C---CCChHhHHHHHHhccCCCeEEEEe
Q 047386 199 DLDP--Y---GSPSVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 199 dLDP--y---Gs~~~fld~A~~~l~~gGlL~vTa 227 (581)
+++= | ..+...++...+.|++||+|.+-+
T Consensus 200 F~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 200 FLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred EEecccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 9994 1 234568888889999999999863
No 129
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=98.12 E-value=5.3e-06 Score=84.87 Aligned_cols=99 Identities=23% Similarity=0.303 Sum_probs=78.4
Q ss_pred CCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCC----cEEEEehhHHHHHhhCCCccc
Q 047386 121 KPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACS----KVESHLADARVYMLTHPKEFD 196 (581)
Q Consensus 121 ~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~----~v~v~~~DA~~~l~~~~~~fD 196 (581)
.|.+|||+-||+|++++..|+. | +.|+++|+++++++.+++-...+-+.. . ++++.+.|+..+- .+||
T Consensus 89 ~g~~ilDvGCGgGLLSepLArl--g-a~V~GID~s~~~V~vA~~h~~~dP~~~-~~~~y~l~~~~~~~E~~~----~~fD 160 (282)
T KOG1270|consen 89 LGMKILDVGCGGGLLSEPLARL--G-AQVTGIDASDDMVEVANEHKKMDPVLE-GAIAYRLEYEDTDVEGLT----GKFD 160 (282)
T ss_pred CCceEEEeccCccccchhhHhh--C-CeeEeecccHHHHHHHHHhhhcCchhc-cccceeeehhhcchhhcc----cccc
Confidence 4578999999999999999997 6 579999999999999999977765531 2 3566666665553 4699
Q ss_pred EEee-CC---CCCChHhHHHHHHhccCCCeEEEEe
Q 047386 197 VVDL-DP---YGSPSVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 197 vIdL-DP---yGs~~~fld~A~~~l~~gGlL~vTa 227 (581)
.|.. += +..|..|++...+.|++||.|.||.
T Consensus 161 aVvcsevleHV~dp~~~l~~l~~~lkP~G~lfitt 195 (282)
T KOG1270|consen 161 AVVCSEVLEHVKDPQEFLNCLSALLKPNGRLFITT 195 (282)
T ss_pred eeeeHHHHHHHhCHHHHHHHHHHHhCCCCceEeee
Confidence 9852 11 2335789999999999999999986
No 130
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.12 E-value=2.2e-05 Score=75.70 Aligned_cols=105 Identities=27% Similarity=0.376 Sum_probs=66.5
Q ss_pred CCCCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehh---HH--HHHhhCCC
Q 047386 119 QLKPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLAD---AR--VYMLTHPK 193 (581)
Q Consensus 119 ~~~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~D---A~--~~l~~~~~ 193 (581)
.+.+.+|||+-||+|+-||-+++-. ++.+|++-|.++ ++++++.|++.|+.....++.+..-| .. ..+ ...
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~-~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~--~~~ 118 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLF-GAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLL--EPH 118 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT--T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHH--S-S
T ss_pred hcCCceEEEECCccchhHHHHHhcc-CCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCccccccc--ccc
Confidence 4567899999999999999999852 688999999999 99999999999982112456655433 22 222 245
Q ss_pred cccEEe-eCC-CCC--ChHhHHHHHHhccCCCeEEEEe
Q 047386 194 EFDVVD-LDP-YGS--PSVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 194 ~fDvId-LDP-yGs--~~~fld~A~~~l~~gGlL~vTa 227 (581)
.||+|+ -|- |-. ..++++...++++++|.+++.+
T Consensus 119 ~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~ 156 (173)
T PF10294_consen 119 SFDVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAY 156 (173)
T ss_dssp SBSEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEE
T ss_pred cCCEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 799986 465 432 2367777777888888877665
No 131
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.10 E-value=9.5e-05 Score=77.06 Aligned_cols=103 Identities=18% Similarity=0.293 Sum_probs=86.8
Q ss_pred CeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhC--CCCCCcEEEEehhHHHHHhhCCCcccEEee
Q 047386 123 PRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNG--SVACSKVESHLADARVYMLTHPKEFDVVDL 200 (581)
Q Consensus 123 ~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~--~~~~~~v~v~~~DA~~~l~~~~~~fDvIdL 200 (581)
++||-+-.|-|...=+.++. ..+.+|+++|||+..++++++=+-.-. .. ..+++++.+|+..++.....+||+|++
T Consensus 78 k~VLiiGgGdG~tlRevlkh-~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~-dpRv~i~i~Dg~~~v~~~~~~fDvIi~ 155 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKH-LPVERITMVEIDPAVIELARKYLPEPSGGAD-DPRVEIIIDDGVEFLRDCEEKFDVIIV 155 (282)
T ss_pred CeEEEECCCccHHHHHHHhc-CCcceEEEEEcCHHHHHHHHHhccCcccccC-CCceEEEeccHHHHHHhCCCcCCEEEE
Confidence 48999999999998888887 568999999999999999998766432 22 268999999999999987778999999
Q ss_pred CCC---CC-----ChHhHHHHHHhccCCCeEEEEe
Q 047386 201 DPY---GS-----PSVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 201 DPy---Gs-----~~~fld~A~~~l~~gGlL~vTa 227 (581)
|-+ |. ..+|.+..-++|+++|++.+-+
T Consensus 156 D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~ 190 (282)
T COG0421 156 DSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQA 190 (282)
T ss_pred cCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEec
Confidence 863 22 3589999999999999998875
No 132
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.09 E-value=6.8e-06 Score=86.96 Aligned_cols=102 Identities=20% Similarity=0.266 Sum_probs=82.3
Q ss_pred CCCCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEE
Q 047386 119 QLKPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVV 198 (581)
Q Consensus 119 ~~~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvI 198 (581)
-|++++|||.-||||++|+-+|+ .||.+|+++|.|.-| +..++.+..|+++ +.|+++++.+..+-. ..++.|+|
T Consensus 58 lf~dK~VlDVGcGtGILS~F~ak--AGA~~V~aVe~S~ia-~~a~~iv~~N~~~--~ii~vi~gkvEdi~L-P~eKVDiI 131 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGILSMFAAK--AGARKVYAVEASSIA-DFARKIVKDNGLE--DVITVIKGKVEDIEL-PVEKVDII 131 (346)
T ss_pred hcCCCEEEEcCCCccHHHHHHHH--hCcceEEEEechHHH-HHHHHHHHhcCcc--ceEEEeecceEEEec-CccceeEE
Confidence 47889999999999999999999 499999999999999 9999999999997 689999998877622 13789999
Q ss_pred eeCCCCCCh---HhHHHHH----HhccCCCeEEEE
Q 047386 199 DLDPYGSPS---VFLDSAI----QSVADGGMLMCT 226 (581)
Q Consensus 199 dLDPyGs~~---~fld~A~----~~l~~gGlL~vT 226 (581)
+-.=-|..- --||+.+ +.|++||+++=+
T Consensus 132 vSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P~ 166 (346)
T KOG1499|consen 132 VSEWMGYFLLYESMLDSVLYARDKWLKEGGLIYPD 166 (346)
T ss_pred eehhhhHHHHHhhhhhhhhhhhhhccCCCceEccc
Confidence 877644421 1234433 678999998654
No 133
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.09 E-value=1.5e-05 Score=87.79 Aligned_cols=100 Identities=18% Similarity=0.217 Sum_probs=79.5
Q ss_pred CCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEee
Q 047386 121 KPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDL 200 (581)
Q Consensus 121 ~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdL 200 (581)
.+.+|||+-||+|..++..+++. |+ +|+++|+|+.+++.+++|+. +.. .++++.++|+..... ....||+|..
T Consensus 266 ~~~~vLDiGcG~G~~~~~la~~~-~~-~v~gvDiS~~~l~~A~~~~~--~~~--~~v~~~~~d~~~~~~-~~~~fD~I~s 338 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMAENF-DV-HVVGIDLSVNMISFALERAI--GRK--CSVEFEVADCTKKTY-PDNSFDVIYS 338 (475)
T ss_pred CCCEEEEEeccCCHHHHHHHHhc-CC-EEEEEECCHHHHHHHHHHhh--cCC--CceEEEEcCcccCCC-CCCCEEEEEE
Confidence 35699999999999999988864 54 79999999999999999986 332 468899999876432 1357999986
Q ss_pred CC----CCCChHhHHHHHHhccCCCeEEEEe
Q 047386 201 DP----YGSPSVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 201 DP----yGs~~~fld~A~~~l~~gGlL~vTa 227 (581)
-- ...+..++..+.+.|++||.|+++.
T Consensus 339 ~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~ 369 (475)
T PLN02336 339 RDTILHIQDKPALFRSFFKWLKPGGKVLISD 369 (475)
T ss_pred CCcccccCCHHHHHHHHHHHcCCCeEEEEEE
Confidence 42 2335678899999999999999974
No 134
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.06 E-value=4.1e-05 Score=80.99 Aligned_cols=103 Identities=22% Similarity=0.208 Sum_probs=77.3
Q ss_pred CCCCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEE
Q 047386 119 QLKPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVV 198 (581)
Q Consensus 119 ~~~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvI 198 (581)
.+.+.+|||+-||+|..+++++.. |+..|+++|.|+..+...+...+..+.. .++.+..+|+..+-. ...||+|
T Consensus 120 ~l~g~~VLDIGCG~G~~~~~la~~--g~~~V~GiD~S~~~l~q~~a~~~~~~~~--~~i~~~~~d~e~lp~--~~~FD~V 193 (322)
T PRK15068 120 PLKGRTVLDVGCGNGYHMWRMLGA--GAKLVVGIDPSQLFLCQFEAVRKLLGND--QRAHLLPLGIEQLPA--LKAFDTV 193 (322)
T ss_pred CCCCCEEEEeccCCcHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHHHHhcCCC--CCeEEEeCCHHHCCC--cCCcCEE
Confidence 456789999999999999999985 7888999999998765443333333322 468899999876532 4679999
Q ss_pred ee-CC-C--CCChHhHHHHHHhccCCCeEEEEe
Q 047386 199 DL-DP-Y--GSPSVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 199 dL-DP-y--Gs~~~fld~A~~~l~~gGlL~vTa 227 (581)
+. .= | .++..++..+.+.|++||.|+++.
T Consensus 194 ~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 194 FSMGVLYHRRSPLDHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred EECChhhccCCHHHHHHHHHHhcCCCcEEEEEE
Confidence 85 22 2 235578888999999999998863
No 135
>PRK08317 hypothetical protein; Provisional
Probab=98.06 E-value=3.5e-05 Score=75.34 Aligned_cols=103 Identities=27% Similarity=0.303 Sum_probs=79.7
Q ss_pred CCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEeeC
Q 047386 122 PPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDLD 201 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdLD 201 (581)
+.+|||+.||+|..++.++.......+|+++|+|+..++.++++..... .++.+..+|+..+-. ....||+|.+.
T Consensus 20 ~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~----~~~~~~~~d~~~~~~-~~~~~D~v~~~ 94 (241)
T PRK08317 20 GDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLG----PNVEFVRGDADGLPF-PDGSFDAVRSD 94 (241)
T ss_pred CCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCC----CceEEEecccccCCC-CCCCceEEEEe
Confidence 5689999999999999998865224589999999999999999843222 367888888865432 23579999876
Q ss_pred C-C---CCChHhHHHHHHhccCCCeEEEEecc
Q 047386 202 P-Y---GSPSVFLDSAIQSVADGGMLMCTATD 229 (581)
Q Consensus 202 P-y---Gs~~~fld~A~~~l~~gGlL~vTaTD 229 (581)
- + ..+..++..+.++|++||.|++...|
T Consensus 95 ~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 126 (241)
T PRK08317 95 RVLQHLEDPARALAEIARVLRPGGRVVVLDTD 126 (241)
T ss_pred chhhccCCHHHHHHHHHHHhcCCcEEEEEecC
Confidence 4 2 23557889999999999999987654
No 136
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.05 E-value=2.8e-05 Score=75.68 Aligned_cols=100 Identities=20% Similarity=0.265 Sum_probs=78.1
Q ss_pred CCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEeeC
Q 047386 122 PPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDLD 201 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdLD 201 (581)
+.+|||+.||+|..+..++...+.-.+++++|+++.+++.+++|+. .. .++.+..+|+..+.. ....||+|.+.
T Consensus 40 ~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~~--~~i~~~~~d~~~~~~-~~~~~D~i~~~ 113 (223)
T TIGR01934 40 GQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---LP--LNIEFIQADAEALPF-EDNSFDAVTIA 113 (223)
T ss_pred CCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---cC--CCceEEecchhcCCC-CCCcEEEEEEe
Confidence 5689999999999999999864321489999999999999999986 22 467888999987542 23579999752
Q ss_pred ----CCCCChHhHHHHHHhccCCCeEEEEe
Q 047386 202 ----PYGSPSVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 202 ----PyGs~~~fld~A~~~l~~gGlL~vTa 227 (581)
.+..+..++..+.+.|++||.|++..
T Consensus 114 ~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 114 FGLRNVTDIQKALREMYRVLKPGGRLVILE 143 (223)
T ss_pred eeeCCcccHHHHHHHHHHHcCCCcEEEEEE
Confidence 22334578888999999999998753
No 137
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.05 E-value=2.9e-05 Score=77.85 Aligned_cols=101 Identities=22% Similarity=0.298 Sum_probs=78.6
Q ss_pred CCeEEEecCcccHHHHHHhhhcC-CccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEee
Q 047386 122 PPRVLEALSASGLRALRYAREVE-GIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDL 200 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~~-Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdL 200 (581)
+.+|||+-||+|..++.+++.+. .-.+|+++|+|+.+++.+++++...+.. .+++++++|+..+-. ..||+|++
T Consensus 54 ~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~--~~v~~~~~d~~~~~~---~~~d~v~~ 128 (239)
T TIGR00740 54 DSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSE--IPVEILCNDIRHVEI---KNASMVIL 128 (239)
T ss_pred CCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCC--CCeEEEECChhhCCC---CCCCEEee
Confidence 45899999999999999887542 1357999999999999999999876653 468999999976532 35898765
Q ss_pred C-C--CCC---ChHhHHHHHHhccCCCeEEEEe
Q 047386 201 D-P--YGS---PSVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 201 D-P--yGs---~~~fld~A~~~l~~gGlL~vTa 227 (581)
. . |-. ...++....+.|++||.|+++-
T Consensus 129 ~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d 161 (239)
T TIGR00740 129 NFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSE 161 (239)
T ss_pred ecchhhCCHHHHHHHHHHHHHhcCCCeEEEEee
Confidence 3 2 222 2467888889999999999974
No 138
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=98.04 E-value=2.4e-05 Score=79.31 Aligned_cols=93 Identities=24% Similarity=0.283 Sum_probs=73.4
Q ss_pred CCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEeeC
Q 047386 122 PPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDLD 201 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdLD 201 (581)
+.+|||+-||+|..+..++...++ .+|+++|+|+..++.++++ + +++.++|+..+.. ...||+|+..
T Consensus 30 ~~~vLDlGcG~G~~~~~l~~~~p~-~~v~gvD~s~~~~~~a~~~----~------~~~~~~d~~~~~~--~~~fD~v~~~ 96 (255)
T PRK14103 30 ARRVVDLGCGPGNLTRYLARRWPG-AVIEALDSSPEMVAAARER----G------VDARTGDVRDWKP--KPDTDVVVSN 96 (255)
T ss_pred CCEEEEEcCCCCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHhc----C------CcEEEcChhhCCC--CCCceEEEEe
Confidence 568999999999999988876554 4799999999999988652 2 4678899976632 3589999986
Q ss_pred C-C---CCChHhHHHHHHhccCCCeEEEEe
Q 047386 202 P-Y---GSPSVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 202 P-y---Gs~~~fld~A~~~l~~gGlL~vTa 227 (581)
. + ..+..++..+.+.|++||.|.++.
T Consensus 97 ~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 97 AALQWVPEHADLLVRWVDELAPGSWIAVQV 126 (255)
T ss_pred hhhhhCCCHHHHHHHHHHhCCCCcEEEEEc
Confidence 5 2 223567778889999999999874
No 139
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=98.04 E-value=3.9e-05 Score=81.60 Aligned_cols=105 Identities=21% Similarity=0.223 Sum_probs=83.9
Q ss_pred CeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCC----CCcEEEEehhHHHHHhhCCCcccEE
Q 047386 123 PRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVA----CSKVESHLADARVYMLTHPKEFDVV 198 (581)
Q Consensus 123 ~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~----~~~v~v~~~DA~~~l~~~~~~fDvI 198 (581)
.+||-+-.|-|+-.-+..+. |++.+|+.+|+||..+|+.++|..+-.+.. .-+++++..||+.+++.....||+|
T Consensus 291 ~~vLvlGGGDGLAlRellky-P~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~v 369 (508)
T COG4262 291 RSVLVLGGGDGLALRELLKY-PQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVV 369 (508)
T ss_pred ceEEEEcCCchHHHHHHHhC-CCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEE
Confidence 37888888887765555554 899999999999999999998876543321 2479999999999999877899999
Q ss_pred eeCC--CCCC-------hHhHHHHHHhccCCCeEEEEec
Q 047386 199 DLDP--YGSP-------SVFLDSAIQSVADGGMLMCTAT 228 (581)
Q Consensus 199 dLDP--yGs~-------~~fld~A~~~l~~gGlL~vTaT 228 (581)
++|= +.+| .+|...+-+.|+++|++.+.++
T Consensus 370 IVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQag 408 (508)
T COG4262 370 IVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAG 408 (508)
T ss_pred EEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecC
Confidence 8873 3332 3888888899999999999973
No 140
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.02 E-value=2.9e-05 Score=76.79 Aligned_cols=73 Identities=30% Similarity=0.359 Sum_probs=60.9
Q ss_pred CCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEee
Q 047386 121 KPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDL 200 (581)
Q Consensus 121 ~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdL 200 (581)
.+.+|||+.||+|.++..++.. + .+|+++|+|+.+++.+++++..++.. .++++.++|+..+. ..||+|..
T Consensus 55 ~~~~vLDiGcG~G~~~~~la~~--~-~~v~gvD~s~~~i~~a~~~~~~~~~~--~~i~~~~~d~~~~~----~~fD~ii~ 125 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELAKR--G-AIVKAVDISEQMVQMARNRAQGRDVA--GNVEFEVNDLLSLC----GEFDIVVC 125 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHHHC--C-CEEEEEECCHHHHHHHHHHHHhcCCC--CceEEEECChhhCC----CCcCEEEE
Confidence 3568999999999999999873 4 48999999999999999999988764 46899999987653 57998864
Q ss_pred -CC
Q 047386 201 -DP 202 (581)
Q Consensus 201 -DP 202 (581)
+.
T Consensus 126 ~~~ 128 (219)
T TIGR02021 126 MDV 128 (219)
T ss_pred hhH
Confidence 44
No 141
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=97.98 E-value=6.8e-05 Score=79.23 Aligned_cols=103 Identities=18% Similarity=0.118 Sum_probs=76.1
Q ss_pred CCCCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEE
Q 047386 119 QLKPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVV 198 (581)
Q Consensus 119 ~~~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvI 198 (581)
.+.+.+|||+-||+|...++++.+ |+..|+++|.|+..+...+..-+..+.. .++.+...|+..+-. ...||+|
T Consensus 119 ~~~g~~VLDvGCG~G~~~~~~~~~--g~~~v~GiDpS~~ml~q~~~~~~~~~~~--~~v~~~~~~ie~lp~--~~~FD~V 192 (314)
T TIGR00452 119 PLKGRTILDVGCGSGYHMWRMLGH--GAKSLVGIDPTVLFLCQFEAVRKLLDND--KRAILEPLGIEQLHE--LYAFDTV 192 (314)
T ss_pred CCCCCEEEEeccCCcHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHHHHHhccC--CCeEEEECCHHHCCC--CCCcCEE
Confidence 456789999999999999999985 8889999999998876543322222211 356777788765532 2479999
Q ss_pred eeCC--C--CCChHhHHHHHHhccCCCeEEEEe
Q 047386 199 DLDP--Y--GSPSVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 199 dLDP--y--Gs~~~fld~A~~~l~~gGlL~vTa 227 (581)
+.== | .++..+|....++|++||.|+++.
T Consensus 193 ~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvlet 225 (314)
T TIGR00452 193 FSMGVLYHRKSPLEHLKQLKHQLVIKGELVLET 225 (314)
T ss_pred EEcchhhccCCHHHHHHHHHHhcCCCCEEEEEE
Confidence 7532 2 345678999999999999999974
No 142
>PTZ00146 fibrillarin; Provisional
Probab=97.98 E-value=0.00027 Score=73.98 Aligned_cols=101 Identities=20% Similarity=0.119 Sum_probs=72.4
Q ss_pred CCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHH-hh-CCCcccEE
Q 047386 121 KPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYM-LT-HPKEFDVV 198 (581)
Q Consensus 121 ~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l-~~-~~~~fDvI 198 (581)
++.+|||+.||||.+++.++.-+.....|+++|+++.+.+.+.+-++.. .+|.++.+|++.-. +. ....||+|
T Consensus 132 pG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r-----~NI~~I~~Da~~p~~y~~~~~~vDvV 206 (293)
T PTZ00146 132 PGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR-----PNIVPIIEDARYPQKYRMLVPMVDVI 206 (293)
T ss_pred CCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc-----CCCEEEECCccChhhhhcccCCCCEE
Confidence 4569999999999999999987633458999999998775554443321 24678899986422 11 12479999
Q ss_pred eeCCCC--CChHhHHHHHHhccCCCeEEEE
Q 047386 199 DLDPYG--SPSVFLDSAIQSVADGGMLMCT 226 (581)
Q Consensus 199 dLDPyG--s~~~fld~A~~~l~~gGlL~vT 226 (581)
++|=.- .+..++..|.+.|++||.|+|.
T Consensus 207 ~~Dva~pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 207 FADVAQPDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred EEeCCCcchHHHHHHHHHHhccCCCEEEEE
Confidence 999631 1224556677899999999984
No 143
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=97.96 E-value=5.2e-05 Score=80.94 Aligned_cols=98 Identities=14% Similarity=0.150 Sum_probs=77.2
Q ss_pred CCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEeeC
Q 047386 122 PPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDLD 201 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdLD 201 (581)
+.+|||+-||||..++.+++..++ ..|+++|+|+.+++.+++|...+ +++++.+|+..+-. ....||+|+..
T Consensus 114 ~~~VLDLGcGtG~~~l~La~~~~~-~~VtgVD~S~~mL~~A~~k~~~~------~i~~i~gD~e~lp~-~~~sFDvVIs~ 185 (340)
T PLN02490 114 NLKVVDVGGGTGFTTLGIVKHVDA-KNVTILDQSPHQLAKAKQKEPLK------ECKIIEGDAEDLPF-PTDYADRYVSA 185 (340)
T ss_pred CCEEEEEecCCcHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHhhhcc------CCeEEeccHHhCCC-CCCceeEEEEc
Confidence 568999999999999999887544 68999999999999999987633 35678999876432 23579999875
Q ss_pred C-C---CCChHhHHHHHHhccCCCeEEEEe
Q 047386 202 P-Y---GSPSVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 202 P-y---Gs~~~fld~A~~~l~~gGlL~vTa 227 (581)
. + ..+...+..+.+.|++||.|++..
T Consensus 186 ~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~ 215 (340)
T PLN02490 186 GSIEYWPDPQRGIKEAYRVLKIGGKACLIG 215 (340)
T ss_pred ChhhhCCCHHHHHHHHHHhcCCCcEEEEEE
Confidence 3 2 234467888899999999998863
No 144
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=97.96 E-value=4.6e-05 Score=76.79 Aligned_cols=94 Identities=23% Similarity=0.235 Sum_probs=72.4
Q ss_pred CCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEeeC
Q 047386 122 PPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDLD 201 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdLD 201 (581)
+.+|||+-||+|..+..++. .| ..|+++|+|+.+++.++++.. ...++++|+..+-. ....||+|...
T Consensus 43 ~~~vLDiGcG~G~~~~~l~~--~~-~~v~~~D~s~~~l~~a~~~~~--------~~~~~~~d~~~~~~-~~~~fD~V~s~ 110 (251)
T PRK10258 43 FTHVLDAGCGPGWMSRYWRE--RG-SQVTALDLSPPMLAQARQKDA--------ADHYLAGDIESLPL-ATATFDLAWSN 110 (251)
T ss_pred CCeEEEeeCCCCHHHHHHHH--cC-CeEEEEECCHHHHHHHHhhCC--------CCCEEEcCcccCcC-CCCcEEEEEEC
Confidence 45899999999999887776 35 579999999999999988743 12467888866432 23579999876
Q ss_pred C-C---CCChHhHHHHHHhccCCCeEEEEe
Q 047386 202 P-Y---GSPSVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 202 P-y---Gs~~~fld~A~~~l~~gGlL~vTa 227 (581)
. + ..+..++..+.+.|++||+|+++.
T Consensus 111 ~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~ 140 (251)
T PRK10258 111 LAVQWCGNLSTALRELYRVVRPGGVVAFTT 140 (251)
T ss_pred chhhhcCCHHHHHHHHHHHcCCCeEEEEEe
Confidence 5 1 234567888889999999999975
No 145
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=97.96 E-value=4.3e-06 Score=90.10 Aligned_cols=65 Identities=28% Similarity=0.289 Sum_probs=59.7
Q ss_pred CCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhh
Q 047386 122 PPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLT 190 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~ 190 (581)
|..|.|+|||.|-++|-++++ | ..|++||.|++++++++.|+.+|.++. ..++++++||..++++
T Consensus 250 gevv~D~FaGvGPfa~Pa~kK--~-crV~aNDLNpesik~Lk~ni~lNkv~~-~~iei~Nmda~~Flr~ 314 (495)
T KOG2078|consen 250 GEVVCDVFAGVGPFALPAAKK--G-CRVYANDLNPESIKWLKANIKLNKVDP-SAIEIFNMDAKDFLRQ 314 (495)
T ss_pred cchhhhhhcCcCccccchhhc--C-cEEEecCCCHHHHHHHHHhccccccch-hheeeecccHHHHhhc
Confidence 568999999999999999996 5 689999999999999999999999973 5699999999999964
No 146
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=97.96 E-value=3.1e-05 Score=82.04 Aligned_cols=79 Identities=18% Similarity=0.148 Sum_probs=61.3
Q ss_pred CCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHh-CCCCCCcEEEE-ehhHHHHHh---hCCCccc
Q 047386 122 PPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFN-GSVACSKVESH-LADARVYML---THPKEFD 196 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N-~~~~~~~v~v~-~~DA~~~l~---~~~~~fD 196 (581)
+.+|||+-+|+|..+.-.+...++ -+++++|+|+.|++.+++|++.| ++. ++|++. +.|...+.. ...++||
T Consensus 115 ~~~vLDIGtGag~I~~lLa~~~~~-~~~~atDId~~Al~~A~~Nv~~Np~l~--~~I~~~~~~~~~~i~~~i~~~~~~fD 191 (321)
T PRK11727 115 NVRVLDIGVGANCIYPLIGVHEYG-WRFVGSDIDPQALASAQAIISANPGLN--GAIRLRLQKDSKAIFKGIIHKNERFD 191 (321)
T ss_pred CceEEEecCCccHHHHHHHhhCCC-CEEEEEeCCHHHHHHHHHHHHhccCCc--CcEEEEEccchhhhhhcccccCCceE
Confidence 468999999999777666655455 46999999999999999999999 886 678775 445444332 1246899
Q ss_pred EEeeCCC
Q 047386 197 VVDLDPY 203 (581)
Q Consensus 197 vIdLDPy 203 (581)
+|+..|+
T Consensus 192 livcNPP 198 (321)
T PRK11727 192 ATLCNPP 198 (321)
T ss_pred EEEeCCC
Confidence 9999983
No 147
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=97.96 E-value=2.5e-05 Score=78.01 Aligned_cols=99 Identities=27% Similarity=0.332 Sum_probs=75.7
Q ss_pred CCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEee
Q 047386 121 KPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDL 200 (581)
Q Consensus 121 ~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdL 200 (581)
.+.+|||+-+|||..+--++.-+.-..+|+++|+++..++.+++|++.+++. ++++.++|...-+.. ...||.|++
T Consensus 72 pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~---nv~~~~gdg~~g~~~-~apfD~I~v 147 (209)
T PF01135_consen 72 PGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGID---NVEVVVGDGSEGWPE-EAPFDRIIV 147 (209)
T ss_dssp TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTH---SEEEEES-GGGTTGG-G-SEEEEEE
T ss_pred CCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccC---ceeEEEcchhhcccc-CCCcCEEEE
Confidence 4679999999999999888875433457999999999999999999999984 799999998765543 357999999
Q ss_pred CCCC--CChHhHHHHHHhccCCCeEEEEe
Q 047386 201 DPYG--SPSVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 201 DPyG--s~~~fld~A~~~l~~gGlL~vTa 227 (581)
..-- -|..+ ++.|++||.|.+--
T Consensus 148 ~~a~~~ip~~l----~~qL~~gGrLV~pi 172 (209)
T PF01135_consen 148 TAAVPEIPEAL----LEQLKPGGRLVAPI 172 (209)
T ss_dssp SSBBSS--HHH----HHTEEEEEEEEEEE
T ss_pred eeccchHHHHH----HHhcCCCcEEEEEE
Confidence 9722 13333 45699999998864
No 148
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=97.96 E-value=2.6e-05 Score=80.00 Aligned_cols=99 Identities=17% Similarity=0.167 Sum_probs=76.0
Q ss_pred CCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEee
Q 047386 121 KPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDL 200 (581)
Q Consensus 121 ~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdL 200 (581)
.+.+|||+-||+|..++.++.. .+ .+|+++|+|+.+++.+++++.. . .++.+.++|+...-. ....||+|..
T Consensus 52 ~~~~VLDiGcG~G~~a~~la~~-~~-~~v~giD~s~~~~~~a~~~~~~---~--~~i~~~~~D~~~~~~-~~~~FD~V~s 123 (263)
T PTZ00098 52 ENSKVLDIGSGLGGGCKYINEK-YG-AHVHGVDICEKMVNIAKLRNSD---K--NKIEFEANDILKKDF-PENTFDMIYS 123 (263)
T ss_pred CCCEEEEEcCCCChhhHHHHhh-cC-CEEEEEECCHHHHHHHHHHcCc---C--CceEEEECCcccCCC-CCCCeEEEEE
Confidence 3568999999999999888764 24 3799999999999999988753 1 468889999864321 2357999987
Q ss_pred -CCC-C----CChHhHHHHHHhccCCCeEEEEe
Q 047386 201 -DPY-G----SPSVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 201 -DPy-G----s~~~fld~A~~~l~~gGlL~vTa 227 (581)
+-+ . ....++..+.++|++||.|+++.
T Consensus 124 ~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d 156 (263)
T PTZ00098 124 RDAILHLSYADKKKLFEKCYKWLKPNGILLITD 156 (263)
T ss_pred hhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 432 2 23467888889999999999964
No 149
>PRK06922 hypothetical protein; Provisional
Probab=97.96 E-value=4.4e-05 Score=87.13 Aligned_cols=102 Identities=15% Similarity=0.182 Sum_probs=79.5
Q ss_pred CCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHh-hCCCcccEEe
Q 047386 121 KPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYML-THPKEFDVVD 199 (581)
Q Consensus 121 ~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~-~~~~~fDvId 199 (581)
.+.+|||+.||+|..+..++...++ ..|+++|+|+.+++.+++++..++. ++.++++|+..+-. -....||+|+
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~-~kVtGIDIS~~MLe~Ararl~~~g~----~ie~I~gDa~dLp~~fedeSFDvVV 492 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETED-KRIYGIDISENVIDTLKKKKQNEGR----SWNVIKGDAINLSSSFEKESVDTIV 492 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHhhhcCC----CeEEEEcchHhCccccCCCCEEEEE
Confidence 4679999999999999888876554 4799999999999999999876653 47889999987421 1245799998
Q ss_pred eCC----------CC-------CChHhHHHHHHhccCCCeEEEEe
Q 047386 200 LDP----------YG-------SPSVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 200 LDP----------yG-------s~~~fld~A~~~l~~gGlL~vTa 227 (581)
.-+ ++ ....++..+.+.|++||.+++.-
T Consensus 493 sn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D 537 (677)
T PRK06922 493 YSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD 537 (677)
T ss_pred EchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 653 11 12467778889999999999963
No 150
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=97.94 E-value=3.3e-05 Score=77.15 Aligned_cols=99 Identities=16% Similarity=0.147 Sum_probs=68.1
Q ss_pred CCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCC------------CCCcEEEEehhHHHHHh
Q 047386 122 PPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSV------------ACSKVESHLADARVYML 189 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~------------~~~~v~v~~~DA~~~l~ 189 (581)
+.+|||+.||+|--++.+|. .|- .|+++|+|+.|++.+.. .+++. ...++++.++|++.+-.
T Consensus 35 ~~rvLd~GCG~G~da~~LA~--~G~-~V~gvD~S~~Ai~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~ 108 (213)
T TIGR03840 35 GARVFVPLCGKSLDLAWLAE--QGH-RVLGVELSEIAVEQFFA---ENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTA 108 (213)
T ss_pred CCeEEEeCCCchhHHHHHHh--CCC-eEEEEeCCHHHHHHHHH---HcCCCcceeccccceeeecCceEEEEccCCCCCc
Confidence 46999999999999999997 475 59999999999997532 22221 01357889999877643
Q ss_pred hCCCcccEEeeCC-C-----CCChHhHHHHHHhccCCCeEEEE
Q 047386 190 THPKEFDVVDLDP-Y-----GSPSVFLDSAIQSVADGGMLMCT 226 (581)
Q Consensus 190 ~~~~~fDvIdLDP-y-----Gs~~~fld~A~~~l~~gGlL~vT 226 (581)
.....||.|+--- + ..-..++....++|++||.+++.
T Consensus 109 ~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~ 151 (213)
T TIGR03840 109 ADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLI 151 (213)
T ss_pred ccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 2124688763211 1 11135778888999999964443
No 151
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=97.92 E-value=5.4e-05 Score=74.25 Aligned_cols=97 Identities=19% Similarity=0.272 Sum_probs=75.9
Q ss_pred CCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEeeC
Q 047386 122 PPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDLD 201 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdLD 201 (581)
+.+|||+.||+|..+..++...+. .+|+++|+++..++.+++++. .++.++.+|+..+.. ....||+|+..
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~~-~~~~~~D~~~~~~~~~~~~~~-------~~~~~~~~d~~~~~~-~~~~fD~vi~~ 105 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFPQ-AEFIALDISAGMLAQAKTKLS-------ENVQFICGDAEKLPL-EDSSFDLIVSN 105 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCCC-CcEEEEeChHHHHHHHHHhcC-------CCCeEEecchhhCCC-CCCceeEEEEh
Confidence 468999999999999999887543 459999999999988877654 246788899876542 23579999876
Q ss_pred C-C---CCChHhHHHHHHhccCCCeEEEEe
Q 047386 202 P-Y---GSPSVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 202 P-y---Gs~~~fld~A~~~l~~gGlL~vTa 227 (581)
= . ..+..++....+.|++||.|+++.
T Consensus 106 ~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 106 LALQWCDDLSQALSELARVLKPGGLLAFST 135 (240)
T ss_pred hhhhhccCHHHHHHHHHHHcCCCcEEEEEe
Confidence 3 1 234578888899999999999874
No 152
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=97.92 E-value=3.6e-05 Score=77.12 Aligned_cols=99 Identities=20% Similarity=0.218 Sum_probs=69.9
Q ss_pred CCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCC------------CCCcEEEEehhHHHHHh
Q 047386 122 PPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSV------------ACSKVESHLADARVYML 189 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~------------~~~~v~v~~~DA~~~l~ 189 (581)
+.+|||+.||+|--++..|. .|. .|+++|+|+.|++.+. ..+++. ...+|++.++|++.+-.
T Consensus 38 ~~rvL~~gCG~G~da~~LA~--~G~-~V~avD~s~~Ai~~~~---~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~ 111 (218)
T PRK13255 38 GSRVLVPLCGKSLDMLWLAE--QGH-EVLGVELSELAVEQFF---AENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTA 111 (218)
T ss_pred CCeEEEeCCCChHhHHHHHh--CCC-eEEEEccCHHHHHHHH---HHcCCCccccccccccccccCceEEEECcccCCCc
Confidence 45999999999999998887 475 5999999999999753 233321 11468889999987743
Q ss_pred hCCCcccEEe-------eCCCCCChHhHHHHHHhccCCCe-EEEEe
Q 047386 190 THPKEFDVVD-------LDPYGSPSVFLDSAIQSVADGGM-LMCTA 227 (581)
Q Consensus 190 ~~~~~fDvId-------LDPyGs~~~fld~A~~~l~~gGl-L~vTa 227 (581)
.....||+|+ +.| ..-..++....++|++||. ++++-
T Consensus 112 ~~~~~fd~v~D~~~~~~l~~-~~R~~~~~~l~~lL~pgG~~~l~~~ 156 (218)
T PRK13255 112 ADLADVDAVYDRAALIALPE-EMRERYVQQLAALLPAGCRGLLVTL 156 (218)
T ss_pred ccCCCeeEEEehHhHhhCCH-HHHHHHHHHHHHHcCCCCeEEEEEE
Confidence 2224688875 211 1123677888899999995 44443
No 153
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=97.89 E-value=5.1e-05 Score=75.39 Aligned_cols=91 Identities=23% Similarity=0.220 Sum_probs=66.5
Q ss_pred CCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHH--H----hh-CCCc
Q 047386 122 PPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVY--M----LT-HPKE 194 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~--l----~~-~~~~ 194 (581)
+.+|||+-||||.++..++........|+++|+++ .+.+. .++++++|+... + .. ....
T Consensus 52 ~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-----------~~~~~---~v~~i~~D~~~~~~~~~i~~~~~~~~ 117 (209)
T PRK11188 52 GMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-----------MDPIV---GVDFLQGDFRDELVLKALLERVGDSK 117 (209)
T ss_pred CCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-----------ccCCC---CcEEEecCCCChHHHHHHHHHhCCCC
Confidence 55899999999999999988643345899999998 12332 478999998763 1 11 1357
Q ss_pred ccEEeeCC--C--CCC-----------hHhHHHHHHhccCCCeEEEE
Q 047386 195 FDVVDLDP--Y--GSP-----------SVFLDSAIQSVADGGMLMCT 226 (581)
Q Consensus 195 fDvIdLDP--y--Gs~-----------~~fld~A~~~l~~gGlL~vT 226 (581)
||+|..|+ + |.+ ...+..+.+.|++||.|++.
T Consensus 118 ~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~ 164 (209)
T PRK11188 118 VQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVK 164 (209)
T ss_pred CCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 99999875 2 332 12456678899999999985
No 154
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=97.88 E-value=1.8e-05 Score=65.98 Aligned_cols=91 Identities=25% Similarity=0.329 Sum_probs=69.5
Q ss_pred EEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEeeCC-C-
Q 047386 126 LEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDLDP-Y- 203 (581)
Q Consensus 126 LDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdLDP-y- 203 (581)
||+-||+|..+..+++. +..+|+++|+|+.+++.++++....+ +.+.++|+..+-. ....||+|++-= +
T Consensus 1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~~~------~~~~~~d~~~l~~-~~~sfD~v~~~~~~~ 71 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--GGASVTGIDISEEMLEQARKRLKNEG------VSFRQGDAEDLPF-PDNSFDVVFSNSVLH 71 (95)
T ss_dssp EEET-TTSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTTST------EEEEESBTTSSSS--TT-EEEEEEESHGG
T ss_pred CEecCcCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhcccccC------chheeehHHhCcc-cccccccccccccee
Confidence 89999999999999985 56789999999999999999887443 4588899776632 357899996543 1
Q ss_pred --CCChHhHHHHHHhccCCCeEEE
Q 047386 204 --GSPSVFLDSAIQSVADGGMLMC 225 (581)
Q Consensus 204 --Gs~~~fld~A~~~l~~gGlL~v 225 (581)
..+..++..+.+.|++||.|++
T Consensus 72 ~~~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 72 HLEDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp GSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred eccCHHHHHHHHHHHcCcCeEEeC
Confidence 2245688889999999999975
No 155
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=97.87 E-value=7e-05 Score=72.50 Aligned_cols=92 Identities=23% Similarity=0.183 Sum_probs=66.6
Q ss_pred CCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHH-----Hhh--CCCc
Q 047386 122 PPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVY-----MLT--HPKE 194 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~-----l~~--~~~~ 194 (581)
+.+|||+-||||.+++.++....+..+|+++|+|+.. .. .+++++++|+... +.. ....
T Consensus 33 g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~---~~i~~~~~d~~~~~~~~~l~~~~~~~~ 98 (188)
T TIGR00438 33 GDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PI---ENVDFIRGDFTDEEVLNKIRERVGDDK 98 (188)
T ss_pred CCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cC---CCceEEEeeCCChhHHHHHHHHhCCCC
Confidence 5689999999999999988865455689999999853 12 2356777776432 111 2357
Q ss_pred ccEEeeCC--C--CCC-----------hHhHHHHHHhccCCCeEEEEe
Q 047386 195 FDVVDLDP--Y--GSP-----------SVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 195 fDvIdLDP--y--Gs~-----------~~fld~A~~~l~~gGlL~vTa 227 (581)
||+|+.|+ + |.+ ..++..+.++|++||.+++..
T Consensus 99 ~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 99 VDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred ccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 99999984 1 221 246777889999999999963
No 156
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=97.86 E-value=3e-05 Score=76.58 Aligned_cols=102 Identities=23% Similarity=0.347 Sum_probs=70.8
Q ss_pred CCCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEe
Q 047386 120 LKPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVD 199 (581)
Q Consensus 120 ~~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvId 199 (581)
+++.++||+-||.|--|+..|+. |- .|+++|+|+.|++.+++-++..+++ |++.+.|.+.+-. ...||+|.
T Consensus 29 ~~~g~~LDlgcG~GRNalyLA~~--G~-~VtAvD~s~~al~~l~~~a~~~~l~----i~~~~~Dl~~~~~--~~~yD~I~ 99 (192)
T PF03848_consen 29 LKPGKALDLGCGEGRNALYLASQ--GF-DVTAVDISPVALEKLQRLAEEEGLD----IRTRVADLNDFDF--PEEYDFIV 99 (192)
T ss_dssp S-SSEEEEES-TTSHHHHHHHHT--T--EEEEEESSHHHHHHHHHHHHHTT-T----EEEEE-BGCCBS---TTTEEEEE
T ss_pred cCCCcEEEcCCCCcHHHHHHHHC--CC-eEEEEECCHHHHHHHHHHHhhcCce----eEEEEecchhccc--cCCcCEEE
Confidence 34669999999999999999994 86 5999999999999999999998884 7888888765533 35799996
Q ss_pred eCC---CCCCh---HhHHHHHHhccCCCeEEE-Eeccc
Q 047386 200 LDP---YGSPS---VFLDSAIQSVADGGMLMC-TATDM 230 (581)
Q Consensus 200 LDP---yGs~~---~fld~A~~~l~~gGlL~v-TaTD~ 230 (581)
..= |-.+. ..++.--+++++||++.+ +.++.
T Consensus 100 st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~ 137 (192)
T PF03848_consen 100 STVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFMET 137 (192)
T ss_dssp EESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB--
T ss_pred EEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEeccc
Confidence 431 21111 234444457899999666 55444
No 157
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.84 E-value=9.9e-06 Score=79.81 Aligned_cols=95 Identities=29% Similarity=0.323 Sum_probs=71.5
Q ss_pred CCCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEe
Q 047386 120 LKPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVD 199 (581)
Q Consensus 120 ~~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvId 199 (581)
+.+++|||+-||||+-+|-+++ .|++.|++.|++|.++..|+.|++.|++. +.+...|..- ....||+|.
T Consensus 78 VrgkrVLd~gagsgLvaIAaa~--aGA~~v~a~d~~P~~~~ai~lNa~angv~----i~~~~~d~~g----~~~~~Dl~L 147 (218)
T COG3897 78 VRGKRVLDLGAGSGLVAIAAAR--AGAAEVVAADIDPWLEQAIRLNAAANGVS----ILFTHADLIG----SPPAFDLLL 147 (218)
T ss_pred cccceeeecccccChHHHHHHH--hhhHHHHhcCCChHHHHHhhcchhhccce----eEEeeccccC----CCcceeEEE
Confidence 4688999999999999999999 49999999999999999999999999984 6777777533 356899987
Q ss_pred eCC--CCCC--hHhHHHHHHhccCCCeEEE
Q 047386 200 LDP--YGSP--SVFLDSAIQSVADGGMLMC 225 (581)
Q Consensus 200 LDP--yGs~--~~fld~A~~~l~~gGlL~v 225 (581)
+-= |..+ ...+. -+..+...|.-.+
T Consensus 148 agDlfy~~~~a~~l~~-~~~~l~~~g~~vl 176 (218)
T COG3897 148 AGDLFYNHTEADRLIP-WKDRLAEAGAAVL 176 (218)
T ss_pred eeceecCchHHHHHHH-HHHHHHhCCCEEE
Confidence 643 4431 12222 3344555555444
No 158
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=97.83 E-value=8.3e-05 Score=77.09 Aligned_cols=99 Identities=24% Similarity=0.320 Sum_probs=74.9
Q ss_pred CCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEe-
Q 047386 121 KPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVD- 199 (581)
Q Consensus 121 ~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvId- 199 (581)
.|.+|||+-||.|.+++++|++- |+ .|+++.+|+.-++.+++-++..|+. +++++.++|...+- .+||.|.
T Consensus 62 ~G~~vLDiGcGwG~~~~~~a~~~-g~-~v~gitlS~~Q~~~a~~~~~~~gl~--~~v~v~~~D~~~~~----~~fD~IvS 133 (273)
T PF02353_consen 62 PGDRVLDIGCGWGGLAIYAAERY-GC-HVTGITLSEEQAEYARERIREAGLE--DRVEVRLQDYRDLP----GKFDRIVS 133 (273)
T ss_dssp TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTSS--STEEEEES-GGG-------S-SEEEE
T ss_pred CCCEEEEeCCCccHHHHHHHHHc-Cc-EEEEEECCHHHHHHHHHHHHhcCCC--CceEEEEeeccccC----CCCCEEEE
Confidence 46799999999999999999974 76 6999999999999999999999986 78999999976542 3899874
Q ss_pred eCCC---CCC--hHhHHHHHHhccCCCeEEEEe
Q 047386 200 LDPY---GSP--SVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 200 LDPy---Gs~--~~fld~A~~~l~~gGlL~vTa 227 (581)
++-+ |.. ..|+..+-++|++||.+.+.+
T Consensus 134 i~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~ 166 (273)
T PF02353_consen 134 IEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQT 166 (273)
T ss_dssp ESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEE
T ss_pred EechhhcChhHHHHHHHHHHHhcCCCcEEEEEe
Confidence 4442 322 367888889999999998753
No 159
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=97.83 E-value=0.00011 Score=79.56 Aligned_cols=95 Identities=20% Similarity=0.236 Sum_probs=75.0
Q ss_pred CCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEee
Q 047386 121 KPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDL 200 (581)
Q Consensus 121 ~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdL 200 (581)
.+.+|||+-||+|..++.+++. .|+ +|+++|+|+..++.+++++. ++ .+++..+|+..+ ...||+|..
T Consensus 167 ~g~rVLDIGcG~G~~a~~la~~-~g~-~V~giDlS~~~l~~A~~~~~--~l----~v~~~~~D~~~l----~~~fD~Ivs 234 (383)
T PRK11705 167 PGMRVLDIGCGWGGLARYAAEH-YGV-SVVGVTISAEQQKLAQERCA--GL----PVEIRLQDYRDL----NGQFDRIVS 234 (383)
T ss_pred CCCEEEEeCCCccHHHHHHHHH-CCC-EEEEEeCCHHHHHHHHHHhc--cC----eEEEEECchhhc----CCCCCEEEE
Confidence 4669999999999999999986 354 79999999999999999985 33 367888887654 357999964
Q ss_pred CC-C---CC--ChHhHHHHHHhccCCCeEEEEe
Q 047386 201 DP-Y---GS--PSVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 201 DP-y---Gs--~~~fld~A~~~l~~gGlL~vTa 227 (581)
-. + |. ...++..+.+.|++||++++..
T Consensus 235 ~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 235 VGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred eCchhhCChHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 33 2 22 1367888889999999999874
No 160
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=97.83 E-value=8.2e-06 Score=84.74 Aligned_cols=100 Identities=24% Similarity=0.231 Sum_probs=76.1
Q ss_pred CCCeEEEecCcccHHHH-HHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEe
Q 047386 121 KPPRVLEALSASGLRAL-RYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVD 199 (581)
Q Consensus 121 ~~~~VLDafsgSG~rgI-r~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvId 199 (581)
.+..|.|++||.|.|-+ -|.+ .||+.|+|.|.||.++|.+++|++.|++. ++..++.+|.+..-. ....|.|.
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~--agAk~V~A~EwNp~svEaLrR~~~~N~V~--~r~~i~~gd~R~~~~--~~~AdrVn 267 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVT--AGAKTVFACEWNPWSVEALRRNAEANNVM--DRCRITEGDNRNPKP--RLRADRVN 267 (351)
T ss_pred ccchhhhhhcccceEEeehhhc--cCccEEEEEecCHHHHHHHHHHHHhcchH--HHHHhhhccccccCc--cccchhee
Confidence 35689999999999999 5555 59999999999999999999999999986 566677777655432 24578888
Q ss_pred eCCCCCChHhHHHHHHhcc-CCC-eEEEE
Q 047386 200 LDPYGSPSVFLDSAIQSVA-DGG-MLMCT 226 (581)
Q Consensus 200 LDPyGs~~~fld~A~~~l~-~gG-lL~vT 226 (581)
|-=--|...--..|+++|+ +|| +|.|-
T Consensus 268 LGLlPSse~~W~~A~k~Lk~eggsilHIH 296 (351)
T KOG1227|consen 268 LGLLPSSEQGWPTAIKALKPEGGSILHIH 296 (351)
T ss_pred eccccccccchHHHHHHhhhcCCcEEEEe
Confidence 8752222333445788888 556 88885
No 161
>KOG2730 consensus Methylase [General function prediction only]
Probab=97.82 E-value=2.3e-05 Score=78.49 Aligned_cols=81 Identities=22% Similarity=0.383 Sum_probs=69.6
Q ss_pred CCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhC---CCcccE
Q 047386 121 KPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTH---PKEFDV 197 (581)
Q Consensus 121 ~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~---~~~fDv 197 (581)
....|+|+|||.|+-.|.+|.. | -.|+++|+||.-+..++.|++.-|++ ++|++++||...+.... +..+|.
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~--~-~~VisIdiDPikIa~AkhNaeiYGI~--~rItFI~GD~ld~~~~lq~~K~~~~~ 168 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQ--G-PYVIAIDIDPVKIACARHNAEVYGVP--DRITFICGDFLDLASKLKADKIKYDC 168 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHh--C-CeEEEEeccHHHHHHHhccceeecCC--ceeEEEechHHHHHHHHhhhhheeee
Confidence 5568999999999999999985 5 46999999999999999999999997 69999999999887653 355789
Q ss_pred EeeCC-CCCC
Q 047386 198 VDLDP-YGSP 206 (581)
Q Consensus 198 IdLDP-yGs~ 206 (581)
|++-| +|-|
T Consensus 169 vf~sppwggp 178 (263)
T KOG2730|consen 169 VFLSPPWGGP 178 (263)
T ss_pred eecCCCCCCc
Confidence 99998 4544
No 162
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=97.79 E-value=6.4e-05 Score=79.20 Aligned_cols=145 Identities=19% Similarity=0.256 Sum_probs=105.1
Q ss_pred cCCCCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccE
Q 047386 118 RQLKPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDV 197 (581)
Q Consensus 118 ~~~~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDv 197 (581)
.+|.++.|||+-||||+++.-+|. .||++|++++.|.-| +.+++-++-|++. ++|.++.|-....- .+++.||
T Consensus 174 sDF~~kiVlDVGaGSGILS~FAaq--AGA~~vYAvEAS~MA-qyA~~Lv~~N~~~--~rItVI~GKiEdie--LPEk~Dv 246 (517)
T KOG1500|consen 174 SDFQDKIVLDVGAGSGILSFFAAQ--AGAKKVYAVEASEMA-QYARKLVASNNLA--DRITVIPGKIEDIE--LPEKVDV 246 (517)
T ss_pred cccCCcEEEEecCCccHHHHHHHH--hCcceEEEEehhHHH-HHHHHHHhcCCcc--ceEEEccCcccccc--CchhccE
Confidence 468899999999999999999998 599999999999766 6888889999886 79999998776553 3678999
Q ss_pred EeeCCCCC---ChHhHHH---HHHhccCCCeEEEEeccchhhcCCCcchhhhhccCccCCCccchhh-----hHHHHHHH
Q 047386 198 VDLDPYGS---PSVFLDS---AIQSVADGGMLMCTATDMAVLCGGNGEVCYSKYGSYPLRGKYCHEM-----ALRILLAC 266 (581)
Q Consensus 198 IdLDPyGs---~~~fld~---A~~~l~~gGlL~vTaTD~a~Lcg~~~~~c~rkYG~~~~k~~~~hE~-----~lRill~~ 266 (581)
|+-.|-|. ....|++ |-+.|++.|.+.=|..|.-. .+|+.|. .-+. .
T Consensus 247 iISEPMG~mL~NERMLEsYl~Ark~l~P~GkMfPT~gdiHl-------------------APFsDE~Ly~E~~nkA---n 304 (517)
T KOG1500|consen 247 IISEPMGYMLVNERMLESYLHARKWLKPNGKMFPTVGDIHL-------------------APFSDEQLYVEQFNKA---N 304 (517)
T ss_pred EEeccchhhhhhHHHHHHHHHHHhhcCCCCcccCcccceee-------------------cccchHHHHHHHHhhh---h
Confidence 99999776 2233333 45889999998888644321 2233321 1111 1
Q ss_pred HHHHHHHcCCceEEEeecccCceEE
Q 047386 267 IESHANRYKRYIEPVLSVQMDFYVR 291 (581)
Q Consensus 267 i~~~Aa~~~r~i~Plls~s~dhY~R 291 (581)
....-+=||..+.||.--.++-|+|
T Consensus 305 FWyQq~fyGVdLt~L~g~a~~eYFr 329 (517)
T KOG1500|consen 305 FWYQQNFYGVDLTPLYGSAHQEYFR 329 (517)
T ss_pred hhhhhccccccchhhhhhhhhhhhc
Confidence 1233455777888886666677776
No 163
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=97.78 E-value=4.1e-05 Score=75.75 Aligned_cols=119 Identities=24% Similarity=0.361 Sum_probs=81.6
Q ss_pred eEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEeeCC-
Q 047386 124 RVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDLDP- 202 (581)
Q Consensus 124 ~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdLDP- 202 (581)
++||+-||.|.+.-+.|.. ..+++++|+++.|++.+++-+. +. .+|++.+.|.-.+.. ..+||+|.+==
T Consensus 46 ~alEvGCs~G~lT~~LA~r---Cd~LlavDis~~Al~~Ar~Rl~--~~---~~V~~~~~dvp~~~P--~~~FDLIV~SEV 115 (201)
T PF05401_consen 46 RALEVGCSIGVLTERLAPR---CDRLLAVDISPRALARARERLA--GL---PHVEWIQADVPEFWP--EGRFDLIVLSEV 115 (201)
T ss_dssp EEEEE--TTSHHHHHHGGG---EEEEEEEES-HHHHHHHHHHTT--T----SSEEEEES-TTT-----SS-EEEEEEES-
T ss_pred eeEecCCCccHHHHHHHHh---hCceEEEeCCHHHHHHHHHhcC--CC---CCeEEEECcCCCCCC--CCCeeEEEEehH
Confidence 7999999999999999874 6899999999999999999887 33 479999999877754 46899997654
Q ss_pred --CCCCh----HhHHHHHHhccCCCeEEEEeccchhhcCCCcchhhhhccCccCCCccchhhhHHHHHHHHHHH
Q 047386 203 --YGSPS----VFLDSAIQSVADGGMLMCTATDMAVLCGGNGEVCYSKYGSYPLRGKYCHEMALRILLACIESH 270 (581)
Q Consensus 203 --yGs~~----~fld~A~~~l~~gGlL~vTaTD~a~Lcg~~~~~c~rkYG~~~~k~~~~hE~~lRill~~i~~~ 270 (581)
|-++. .+++....+|.+||.|.+-+ .....|.+ . -|..|...++..+..+
T Consensus 116 lYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~--------~rd~~c~~-w---------gh~~ga~tv~~~~~~~ 171 (201)
T PF05401_consen 116 LYYLDDAEDLRAALDRLVAALAPGGHLVFGH--------ARDANCRR-W---------GHAAGAETVLEMLQEH 171 (201)
T ss_dssp GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEE--------E-HHHHHH-T---------T-S--HHHHHHHHHHH
T ss_pred hHcCCCHHHHHHHHHHHHHHhCCCCEEEEEE--------ecCCcccc-c---------CcccchHHHHHHHHHH
Confidence 33333 35666778999999998843 23445655 2 3667777777666554
No 164
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=97.78 E-value=4.8e-05 Score=66.01 Aligned_cols=92 Identities=25% Similarity=0.328 Sum_probs=68.4
Q ss_pred EEEecCcccHHHHHHhhhcC-Cc-cEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEee-C
Q 047386 125 VLEALSASGLRALRYAREVE-GI-GQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDL-D 201 (581)
Q Consensus 125 VLDafsgSG~rgIr~a~E~~-Ga-~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdL-D 201 (581)
|||+-||+|.....++...+ |. ..++++|+|+.+++.++++....+. +++++++|+..+-. ...+||+|+. .
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~----~~~~~~~D~~~l~~-~~~~~D~v~~~~ 75 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP----KVRFVQADARDLPF-SDGKFDLVVCSG 75 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT----TSEEEESCTTCHHH-HSSSEEEEEE-T
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC----ceEEEECCHhHCcc-cCCCeeEEEEcC
Confidence 79999999999999887531 22 6899999999999999999998665 46899999977543 3468999998 3
Q ss_pred C---CCCC---hHhHHHHHHhccCCC
Q 047386 202 P---YGSP---SVFLDSAIQSVADGG 221 (581)
Q Consensus 202 P---yGs~---~~fld~A~~~l~~gG 221 (581)
- |-++ ..+++...+.+++||
T Consensus 76 ~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 76 LSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp TGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred CccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 3 3222 356777788888887
No 165
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.74 E-value=9.6e-05 Score=82.84 Aligned_cols=81 Identities=15% Similarity=0.189 Sum_probs=59.8
Q ss_pred CCeEEEecCcccHHHHHHhhhcCC-------ccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHH----hh
Q 047386 122 PPRVLEALSASGLRALRYAREVEG-------IGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYM----LT 190 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~~G-------a~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l----~~ 190 (581)
..+|||..||||.+.+.++..+.. ...+++.|+|+.+++.++.|+...+. ..+.+.+.|..... ..
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~---~~~~i~~~d~l~~~~~~~~~ 108 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL---LEINVINFNSLSYVLLNIES 108 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC---CCceeeeccccccccccccc
Confidence 458999999999999999876531 15689999999999999999988762 12456666644321 11
Q ss_pred CCCcccEEeeCC-CCC
Q 047386 191 HPKEFDVVDLDP-YGS 205 (581)
Q Consensus 191 ~~~~fDvIdLDP-yGs 205 (581)
...+||+|+..| |+.
T Consensus 109 ~~~~fD~IIgNPPy~~ 124 (524)
T TIGR02987 109 YLDLFDIVITNPPYGR 124 (524)
T ss_pred ccCcccEEEeCCCccc
Confidence 235799999998 663
No 166
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=97.71 E-value=0.00023 Score=74.13 Aligned_cols=99 Identities=13% Similarity=0.189 Sum_probs=78.6
Q ss_pred CCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEeeC
Q 047386 122 PPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDLD 201 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdLD 201 (581)
+.+|||+-||+|..++.+++..|+. +|++.|. +.+++.+++|++..++. ++++++.+|++..- . ..+|+|++-
T Consensus 150 ~~~vlDiG~G~G~~~~~~~~~~p~~-~~~~~D~-~~~~~~a~~~~~~~gl~--~rv~~~~~d~~~~~--~-~~~D~v~~~ 222 (306)
T TIGR02716 150 VKKMIDVGGGIGDISAAMLKHFPEL-DSTILNL-PGAIDLVNENAAEKGVA--DRMRGIAVDIYKES--Y-PEADAVLFC 222 (306)
T ss_pred CCEEEEeCCchhHHHHHHHHHCCCC-EEEEEec-HHHHHHHHHHHHhCCcc--ceEEEEecCccCCC--C-CCCCEEEeE
Confidence 4699999999999999999986654 6899997 79999999999999986 68999999987532 1 247988653
Q ss_pred C--CCC----ChHhHHHHHHhccCCCeEEEEe
Q 047386 202 P--YGS----PSVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 202 P--yGs----~~~fld~A~~~l~~gGlL~vTa 227 (581)
= +.. ...++..+.++|++||.|.|.-
T Consensus 223 ~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d 254 (306)
T TIGR02716 223 RILYSANEQLSTIMCKKAFDAMRSGGRLLILD 254 (306)
T ss_pred hhhhcCChHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 2 111 1346778889999999998874
No 167
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=97.71 E-value=0.0002 Score=70.58 Aligned_cols=71 Identities=27% Similarity=0.285 Sum_probs=58.2
Q ss_pred CCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEee
Q 047386 121 KPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDL 200 (581)
Q Consensus 121 ~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdL 200 (581)
.+.+|||+.||+|..++.++.. +. .|+++|+|+.+++.+++++..+++. +++.+..+|... ....||+|++
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~~~--~~-~v~~~D~s~~~i~~a~~~~~~~~~~--~~i~~~~~d~~~----~~~~fD~v~~ 133 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLARR--GA-KVVASDISPQMVEEARERAPEAGLA--GNITFEVGDLES----LLGRFDTVVC 133 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHHHc--CC-EEEEEECCHHHHHHHHHHHHhcCCc--cCcEEEEcCchh----ccCCcCEEEE
Confidence 3568999999999999999874 54 5999999999999999999988774 468888888322 2357999875
No 168
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=97.62 E-value=0.00014 Score=71.18 Aligned_cols=100 Identities=23% Similarity=0.377 Sum_probs=79.1
Q ss_pred eEEEecCcccHHHHHHhhhcCCcc-EEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHH--Hhh------CCCc
Q 047386 124 RVLEALSASGLRALRYAREVEGIG-QVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVY--MLT------HPKE 194 (581)
Q Consensus 124 ~VLDafsgSG~rgIr~a~E~~Ga~-~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~--l~~------~~~~ 194 (581)
+|||+-+|-|.+=.+.++| |-. ..+.+|-|+.|+++++.-++.++++ +.|++.+.|...- +.. -+..
T Consensus 70 ~VlDLGtGNG~~L~~L~~e--gf~~~L~GvDYs~~AV~LA~niAe~~~~~--n~I~f~q~DI~~~~~~~~qfdlvlDKGT 145 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKE--GFQSKLTGVDYSEKAVELAQNIAERDGFS--NEIRFQQLDITDPDFLSGQFDLVLDKGT 145 (227)
T ss_pred ceeeccCCchHHHHHHHHh--cCCCCccccccCHHHHHHHHHHHHhcCCC--cceeEEEeeccCCcccccceeEEeecCc
Confidence 8999999999999999997 544 4999999999999998888999997 5699999887652 211 0223
Q ss_pred ccEEeeCC---CCCChHhHHHHHHhccCCCeEEEEe
Q 047386 195 FDVVDLDP---YGSPSVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 195 fDvIdLDP---yGs~~~fld~A~~~l~~gGlL~vTa 227 (581)
||.|-|-| -|.+.-|++..-++|++||++.||+
T Consensus 146 ~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItS 181 (227)
T KOG1271|consen 146 LDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITS 181 (227)
T ss_pred eeeeecCCCCcccceeeehhhHhhccCCCcEEEEEe
Confidence 44455555 2445678999889999999999998
No 169
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=97.59 E-value=0.00032 Score=73.04 Aligned_cols=99 Identities=21% Similarity=0.274 Sum_probs=82.8
Q ss_pred CCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEe-
Q 047386 121 KPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVD- 199 (581)
Q Consensus 121 ~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvId- 199 (581)
+|.+|||.-||-|.++|++|++- |+ .|+++++|++..+.+++=++.-|++ +++++...|-+.+- ++||-|.
T Consensus 72 ~G~~lLDiGCGWG~l~~~aA~~y-~v-~V~GvTlS~~Q~~~~~~r~~~~gl~--~~v~v~l~d~rd~~----e~fDrIvS 143 (283)
T COG2230 72 PGMTLLDIGCGWGGLAIYAAEEY-GV-TVVGVTLSEEQLAYAEKRIAARGLE--DNVEVRLQDYRDFE----EPFDRIVS 143 (283)
T ss_pred CCCEEEEeCCChhHHHHHHHHHc-CC-EEEEeeCCHHHHHHHHHHHHHcCCC--cccEEEeccccccc----cccceeee
Confidence 47899999999999999999984 55 6999999999999999999999996 68999888876664 4599875
Q ss_pred eCC---CCC--ChHhHHHHHHhccCCCeEEEEe
Q 047386 200 LDP---YGS--PSVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 200 LDP---yGs--~~~fld~A~~~l~~gGlL~vTa 227 (581)
++= +|. -..|+..+-+.|++||.+.+-+
T Consensus 144 vgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~ 176 (283)
T COG2230 144 VGMFEHVGKENYDDFFKKVYALLKPGGRMLLHS 176 (283)
T ss_pred hhhHHHhCcccHHHHHHHHHhhcCCCceEEEEE
Confidence 333 354 3478999999999999988865
No 170
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=0.00038 Score=69.56 Aligned_cols=96 Identities=27% Similarity=0.353 Sum_probs=78.5
Q ss_pred CCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEee
Q 047386 121 KPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDL 200 (581)
Q Consensus 121 ~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdL 200 (581)
.+.+|||.-+|||--+--.|+- +.+|+.+|+++.-++.+++|++..|+. +|.+.++|...-+.. ...||.|++
T Consensus 72 ~g~~VLEIGtGsGY~aAvla~l---~~~V~siEr~~~L~~~A~~~L~~lg~~---nV~v~~gDG~~G~~~-~aPyD~I~V 144 (209)
T COG2518 72 PGDRVLEIGTGSGYQAAVLARL---VGRVVSIERIEELAEQARRNLETLGYE---NVTVRHGDGSKGWPE-EAPYDRIIV 144 (209)
T ss_pred CCCeEEEECCCchHHHHHHHHH---hCeEEEEEEcHHHHHHHHHHHHHcCCC---ceEEEECCcccCCCC-CCCcCEEEE
Confidence 4669999999999998888773 459999999999999999999999985 599999998766543 358999998
Q ss_pred CCCC--CChHhHHHHHHhccCCCeEEEEe
Q 047386 201 DPYG--SPSVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 201 DPyG--s~~~fld~A~~~l~~gGlL~vTa 227 (581)
.--. -|..+++ -|++||.|.+--
T Consensus 145 taaa~~vP~~Ll~----QL~~gGrlv~Pv 169 (209)
T COG2518 145 TAAAPEVPEALLD----QLKPGGRLVIPV 169 (209)
T ss_pred eeccCCCCHHHHH----hcccCCEEEEEE
Confidence 8632 2555655 499999998863
No 171
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=97.56 E-value=0.00032 Score=77.39 Aligned_cols=97 Identities=21% Similarity=0.179 Sum_probs=72.7
Q ss_pred CCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHH-HhhCCCcccEEee
Q 047386 122 PPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVY-MLTHPKEFDVVDL 200 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~-l~~~~~~fDvIdL 200 (581)
+.+|||+.||+|..+..++.. ..+|+++|+++.+++.. .+.++.. .+++++++|+... +......||+|.+
T Consensus 38 ~~~vLDlGcG~G~~~~~la~~---~~~v~giD~s~~~l~~a---~~~~~~~--~~i~~~~~d~~~~~~~~~~~~fD~I~~ 109 (475)
T PLN02336 38 GKSVLELGAGIGRFTGELAKK---AGQVIALDFIESVIKKN---ESINGHY--KNVKFMCADVTSPDLNISDGSVDLIFS 109 (475)
T ss_pred CCEEEEeCCCcCHHHHHHHhh---CCEEEEEeCCHHHHHHH---HHHhccC--CceEEEEecccccccCCCCCCEEEEeh
Confidence 458999999999999998874 46899999999998653 4445442 4688999998642 2112357999998
Q ss_pred CC-C--CCC---hHhHHHHHHhccCCCeEEEE
Q 047386 201 DP-Y--GSP---SVFLDSAIQSVADGGMLMCT 226 (581)
Q Consensus 201 DP-y--Gs~---~~fld~A~~~l~~gGlL~vT 226 (581)
.. + -.. ..++....+.|++||+|.+.
T Consensus 110 ~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~ 141 (475)
T PLN02336 110 NWLLMYLSDKEVENLAERMVKWLKVGGYIFFR 141 (475)
T ss_pred hhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 86 2 121 35777778899999999885
No 172
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=97.55 E-value=0.00044 Score=72.51 Aligned_cols=85 Identities=21% Similarity=0.182 Sum_probs=69.3
Q ss_pred CCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEeeC
Q 047386 122 PPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDLD 201 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdLD 201 (581)
+.+|||+-||+|.+....+.. +.+|+++|+|+.+++.+++|+..++.. ++++++++|+..+-. ..||+|+.+
T Consensus 37 ~~~VLEIG~G~G~LT~~Ll~~---~~~V~avEiD~~li~~l~~~~~~~~~~--~~v~ii~~Dal~~~~---~~~d~VvaN 108 (294)
T PTZ00338 37 TDTVLEIGPGTGNLTEKLLQL---AKKVIAIEIDPRMVAELKKRFQNSPLA--SKLEVIEGDALKTEF---PYFDVCVAN 108 (294)
T ss_pred cCEEEEecCchHHHHHHHHHh---CCcEEEEECCHHHHHHHHHHHHhcCCC--CcEEEEECCHhhhcc---cccCEEEec
Confidence 458999999999999998874 457999999999999999999987753 579999999977532 368999999
Q ss_pred C-CCCChHhHHHHH
Q 047386 202 P-YGSPSVFLDSAI 214 (581)
Q Consensus 202 P-yGs~~~fld~A~ 214 (581)
+ |.-.++.+-..+
T Consensus 109 lPY~Istpil~~ll 122 (294)
T PTZ00338 109 VPYQISSPLVFKLL 122 (294)
T ss_pred CCcccCcHHHHHHH
Confidence 6 655566665444
No 173
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=97.55 E-value=0.00067 Score=71.81 Aligned_cols=76 Identities=26% Similarity=0.193 Sum_probs=58.3
Q ss_pred CCCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCC--CCCcEEEEehhHHHHHhhCCCcccE
Q 047386 120 LKPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSV--ACSKVESHLADARVYMLTHPKEFDV 197 (581)
Q Consensus 120 ~~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~--~~~~v~v~~~DA~~~l~~~~~~fDv 197 (581)
..+.+|||+.||||..++.++.. | ..|+++|+|+.+++..++|+...+.. ....+++..+|...+ ...||+
T Consensus 143 ~~~~~VLDlGcGtG~~a~~la~~--g-~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l----~~~fD~ 215 (315)
T PLN02585 143 LAGVTVCDAGCGTGSLAIPLALE--G-AIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL----SGKYDT 215 (315)
T ss_pred CCCCEEEEecCCCCHHHHHHHHC--C-CEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc----CCCcCE
Confidence 34679999999999999999984 6 47999999999999999999865221 013567888886543 357998
Q ss_pred Ee-eCC
Q 047386 198 VD-LDP 202 (581)
Q Consensus 198 Id-LDP 202 (581)
|+ .|.
T Consensus 216 Vv~~~v 221 (315)
T PLN02585 216 VTCLDV 221 (315)
T ss_pred EEEcCE
Confidence 86 344
No 174
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=97.54 E-value=0.00062 Score=71.22 Aligned_cols=103 Identities=16% Similarity=0.089 Sum_probs=75.8
Q ss_pred CCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCC----cccE
Q 047386 122 PPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPK----EFDV 197 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~----~fDv 197 (581)
+.+|||+-||||...+..+..++....|+++|+|+.+++.+++++....-. -++..+++|....+..... ...+
T Consensus 64 ~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~--~~v~~i~gD~~~~~~~~~~~~~~~~~~ 141 (301)
T TIGR03438 64 GCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQ--LEVHGICADFTQPLALPPEPAAGRRLG 141 (301)
T ss_pred CCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCC--ceEEEEEEcccchhhhhcccccCCeEE
Confidence 458999999999999999886442357999999999999999998764321 3577889998765422111 2345
Q ss_pred EeeCC-CCC-----ChHhHHHHHHhccCCCeEEEE
Q 047386 198 VDLDP-YGS-----PSVFLDSAIQSVADGGMLMCT 226 (581)
Q Consensus 198 IdLDP-yGs-----~~~fld~A~~~l~~gGlL~vT 226 (581)
++++- ++. ...|+....+.|++||+|.+.
T Consensus 142 ~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 142 FFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred EEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 66663 443 235788888899999999885
No 175
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.53 E-value=8.4e-05 Score=73.00 Aligned_cols=92 Identities=17% Similarity=0.263 Sum_probs=74.0
Q ss_pred eEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEeeCCC
Q 047386 124 RVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDLDPY 203 (581)
Q Consensus 124 ~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdLDPy 203 (581)
.+.|+-+|||++|+-+|+ -|++|+|++.||.-..++++|+..+|. .+++++.+||..+-- +..|+|+..=-
T Consensus 35 ~~~DLGaGsGiLs~~Aa~---~A~rViAiE~dPk~a~~a~eN~~v~g~---~n~evv~gDA~~y~f---e~ADvvicEml 105 (252)
T COG4076 35 TFADLGAGSGILSVVAAH---AAERVIAIEKDPKRARLAEENLHVPGD---VNWEVVVGDARDYDF---ENADVVICEML 105 (252)
T ss_pred ceeeccCCcchHHHHHHh---hhceEEEEecCcHHHHHhhhcCCCCCC---cceEEEecccccccc---cccceeHHHHh
Confidence 699999999999999998 389999999999999999999999997 489999999987643 34688742211
Q ss_pred CC------ChHhHHHHHHhccCCCeEE
Q 047386 204 GS------PSVFLDSAIQSVADGGMLM 224 (581)
Q Consensus 204 Gs------~~~fld~A~~~l~~gGlL~ 224 (581)
.+ -.|-+.+++..|+..+-+.
T Consensus 106 DTaLi~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 106 DTALIEEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred hHHhhcccccHHHHHHHHHhhcCCccc
Confidence 11 2477788888888776654
No 176
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.43 E-value=0.0013 Score=64.60 Aligned_cols=77 Identities=19% Similarity=0.190 Sum_probs=66.8
Q ss_pred CCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEee
Q 047386 121 KPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDL 200 (581)
Q Consensus 121 ~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdL 200 (581)
....+||.-||||+.+--.++-+.+-....+.|+||.|++.-++-++.|++ ++.+++.|...-++. ++.||+..
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~----~~~~V~tdl~~~l~~--~~VDvLvf 116 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV----HIDVVRTDLLSGLRN--ESVDVLVF 116 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC----ccceeehhHHhhhcc--CCccEEEE
Confidence 356899999999999998888765555688999999999999999999997 378999999888874 68999999
Q ss_pred CCC
Q 047386 201 DPY 203 (581)
Q Consensus 201 DPy 203 (581)
.|+
T Consensus 117 NPP 119 (209)
T KOG3191|consen 117 NPP 119 (209)
T ss_pred CCC
Confidence 984
No 177
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.42 E-value=0.002 Score=65.76 Aligned_cols=103 Identities=22% Similarity=0.217 Sum_probs=63.6
Q ss_pred cCCCCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhh-CCCccc
Q 047386 118 RQLKPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLT-HPKEFD 196 (581)
Q Consensus 118 ~~~~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~-~~~~fD 196 (581)
+.+.|++||=+- =-=+.||-.|.- ...++|+.+|+|+.-++.|++.++..|+. ++.++.|.+.-|.. ...+||
T Consensus 41 gdL~gk~il~lG-DDDLtSlA~al~-~~~~~I~VvDiDeRll~fI~~~a~~~gl~----i~~~~~DlR~~LP~~~~~~fD 114 (243)
T PF01861_consen 41 GDLEGKRILFLG-DDDLTSLALALT-GLPKRITVVDIDERLLDFINRVAEEEGLP----IEAVHYDLRDPLPEELRGKFD 114 (243)
T ss_dssp T-STT-EEEEES--TT-HHHHHHHH-T--SEEEEE-S-HHHHHHHHHHHHHHT------EEEE---TTS---TTTSS-BS
T ss_pred CcccCCEEEEEc-CCcHHHHHHHhh-CCCCeEEEEEcCHHHHHHHHHHHHHcCCc----eEEEEecccccCCHHHhcCCC
Confidence 345677887543 333677777764 34679999999999999999999999984 89999999877754 357899
Q ss_pred EEeeCCCCCC---hHhHHHHHHhccCCC-eEEEE
Q 047386 197 VVDLDPYGSP---SVFLDSAIQSVADGG-MLMCT 226 (581)
Q Consensus 197 vIdLDPyGs~---~~fld~A~~~l~~gG-lL~vT 226 (581)
+++.||+-++ .-|+..++++|+..| ..++.
T Consensus 115 ~f~TDPPyT~~G~~LFlsRgi~~Lk~~g~~gy~~ 148 (243)
T PF01861_consen 115 VFFTDPPYTPEGLKLFLSRGIEALKGEGCAGYFG 148 (243)
T ss_dssp EEEE---SSHHHHHHHHHHHHHTB-STT-EEEEE
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHhCCCCceEEEE
Confidence 9999996554 358999999999666 54443
No 178
>PRK00536 speE spermidine synthase; Provisional
Probab=97.41 E-value=0.0012 Score=68.23 Aligned_cols=96 Identities=10% Similarity=0.003 Sum_probs=74.8
Q ss_pred CCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHh--CCCCCCcEEEEehhHHHHHhhCCCcccEEe
Q 047386 122 PPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFN--GSVACSKVESHLADARVYMLTHPKEFDVVD 199 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N--~~~~~~~v~v~~~DA~~~l~~~~~~fDvId 199 (581)
+++||=+-+|=|+-.-+.++. + .+|+.+|||+..+++.++-+-.. ++++ .+++++. .++....++||||+
T Consensus 73 pk~VLIiGGGDGg~~REvLkh-~--~~v~mVeID~~Vv~~~k~~lP~~~~~~~D-pRv~l~~----~~~~~~~~~fDVII 144 (262)
T PRK00536 73 LKEVLIVDGFDLELAHQLFKY-D--THVDFVQADEKILDSFISFFPHFHEVKNN-KNFTHAK----QLLDLDIKKYDLII 144 (262)
T ss_pred CCeEEEEcCCchHHHHHHHCc-C--CeeEEEECCHHHHHHHHHHCHHHHHhhcC-CCEEEee----hhhhccCCcCCEEE
Confidence 569999999999999999996 3 49999999999999999933221 2332 4777775 23332346899999
Q ss_pred eCC-CCCChHhHHHHHHhccCCCeEEEEe
Q 047386 200 LDP-YGSPSVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 200 LDP-yGs~~~fld~A~~~l~~gGlL~vTa 227 (581)
+|- |. ..|....-++|++||++++.+
T Consensus 145 vDs~~~--~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 145 CLQEPD--IHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred EcCCCC--hHHHHHHHHhcCCCcEEEECC
Confidence 994 53 588888899999999999976
No 179
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=97.34 E-value=0.00025 Score=73.34 Aligned_cols=69 Identities=19% Similarity=0.142 Sum_probs=54.1
Q ss_pred eEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhC-CCcccEEeeCC
Q 047386 124 RVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTH-PKEFDVVDLDP 202 (581)
Q Consensus 124 ~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~-~~~fDvIdLDP 202 (581)
+|||+|||.|+.++-+.. .|.+.|+++|+++.|+++.+.|... .++++|+..+.... ...+|+|..+|
T Consensus 2 ~v~dLFsG~Gg~~~gl~~--~G~~~v~a~e~~~~a~~~~~~N~~~---------~~~~~Di~~~~~~~~~~~~D~l~~gp 70 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEK--AGFEIVAANEIDKSAAETYEANFPN---------KLIEGDITKIDEKDFIPDIDLLTGGF 70 (275)
T ss_pred cEEEEccCcchHHHHHHH--cCCEEEEEEeCCHHHHHHHHHhCCC---------CCccCccccCchhhcCCCCCEEEeCC
Confidence 699999999999776655 4889999999999999999998741 14566666554332 34699999999
Q ss_pred C
Q 047386 203 Y 203 (581)
Q Consensus 203 y 203 (581)
+
T Consensus 71 P 71 (275)
T cd00315 71 P 71 (275)
T ss_pred C
Confidence 6
No 180
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=97.30 E-value=0.001 Score=65.91 Aligned_cols=70 Identities=13% Similarity=0.103 Sum_probs=54.5
Q ss_pred CCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEeeC
Q 047386 122 PPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDLD 201 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdLD 201 (581)
+.+|||+-||+|......+...++ ..|+++|+|+.+++.+++|+. .+.+.++|+.... ....||+|+..
T Consensus 44 ~~~VLDiGCG~G~~~~~L~~~~~~-~~v~giDiS~~~l~~A~~~~~--------~~~~~~~d~~~~~--~~~sfD~V~~~ 112 (204)
T TIGR03587 44 IASILELGANIGMNLAALKRLLPF-KHIYGVEINEYAVEKAKAYLP--------NINIIQGSLFDPF--KDNFFDLVLTK 112 (204)
T ss_pred CCcEEEEecCCCHHHHHHHHhCCC-CeEEEEECCHHHHHHHHhhCC--------CCcEEEeeccCCC--CCCCEEEEEEC
Confidence 457999999999999998876544 579999999999999998742 2456788876622 24589999864
Q ss_pred C
Q 047386 202 P 202 (581)
Q Consensus 202 P 202 (581)
=
T Consensus 113 ~ 113 (204)
T TIGR03587 113 G 113 (204)
T ss_pred C
Confidence 3
No 181
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=97.30 E-value=0.00075 Score=69.29 Aligned_cols=94 Identities=17% Similarity=0.257 Sum_probs=68.3
Q ss_pred CCeEEEecCcccHHHHHHhhhcCCc--cEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEe
Q 047386 122 PPRVLEALSASGLRALRYAREVEGI--GQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVD 199 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~~Ga--~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvId 199 (581)
+.+|||+-||+|..+...+..++.. ..|+++|+|+.+++.++++. .++.+..+|+..+-. ....||+|.
T Consensus 86 ~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~--------~~~~~~~~d~~~lp~-~~~sfD~I~ 156 (272)
T PRK11088 86 ATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY--------PQVTFCVASSHRLPF-ADQSLDAII 156 (272)
T ss_pred CCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC--------CCCeEEEeecccCCC-cCCceeEEE
Confidence 3479999999999999887754322 36999999999999987752 135677888765422 235799997
Q ss_pred eCCCCCChHhHHHHHHhccCCCeEEEEe
Q 047386 200 LDPYGSPSVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 200 LDPyGs~~~fld~A~~~l~~gGlL~vTa 227 (581)
. .|. + .++....+.|++||.|++..
T Consensus 157 ~-~~~-~-~~~~e~~rvLkpgG~li~~~ 181 (272)
T PRK11088 157 R-IYA-P-CKAEELARVVKPGGIVITVT 181 (272)
T ss_pred E-ecC-C-CCHHHHHhhccCCCEEEEEe
Confidence 4 222 2 34566778999999998753
No 182
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=97.29 E-value=0.0012 Score=67.50 Aligned_cols=82 Identities=24% Similarity=0.148 Sum_probs=65.4
Q ss_pred CCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEeeC
Q 047386 122 PPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDLD 201 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdLD 201 (581)
+.+|||+.||+|..++.++.. + .+|+++|+|+..++.+++|+.. . .+++++++|+..+-. ..||+|+..
T Consensus 30 ~~~VLEIG~G~G~lt~~L~~~--~-~~v~~vEid~~~~~~l~~~~~~--~---~~v~ii~~D~~~~~~---~~~d~Vv~N 98 (258)
T PRK14896 30 GDPVLEIGPGKGALTDELAKR--A-KKVYAIELDPRLAEFLRDDEIA--A---GNVEIIEGDALKVDL---PEFNKVVSN 98 (258)
T ss_pred cCeEEEEeCccCHHHHHHHHh--C-CEEEEEECCHHHHHHHHHHhcc--C---CCEEEEEeccccCCc---hhceEEEEc
Confidence 568999999999999999985 3 5899999999999999999864 2 468999999976532 358999988
Q ss_pred C-CCCChHhHHHHH
Q 047386 202 P-YGSPSVFLDSAI 214 (581)
Q Consensus 202 P-yGs~~~fld~A~ 214 (581)
| |...++.+...+
T Consensus 99 lPy~i~s~~~~~l~ 112 (258)
T PRK14896 99 LPYQISSPITFKLL 112 (258)
T ss_pred CCcccCcHHHHHHH
Confidence 5 765556655433
No 183
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=97.26 E-value=0.00044 Score=71.19 Aligned_cols=109 Identities=18% Similarity=0.194 Sum_probs=72.5
Q ss_pred CCeEEEecCcccH----HHHHHhhhcCC----ccEEEEEeCCHHHHHHHHHHH----HHhCCCC----------------
Q 047386 122 PPRVLEALSASGL----RALRYAREVEG----IGQVVALDNDKASVEACRRNI----KFNGSVA---------------- 173 (581)
Q Consensus 122 ~~~VLDafsgSG~----rgIr~a~E~~G----a~~V~anD~s~~Ave~i~~Ni----~~N~~~~---------------- 173 (581)
+.+|||+-||||- +++.++...+. -.+|++.|+|+.+++.+++++ ...++..
T Consensus 100 ~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v 179 (264)
T smart00138 100 RVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYRV 179 (264)
T ss_pred CEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEE
Confidence 4699999999995 56666553221 247999999999999999875 1122210
Q ss_pred ----CCcEEEEehhHHHHHhhCCCcccEEeeC-C--CCC-C--hHhHHHHHHhccCCCeEEEEeccch
Q 047386 174 ----CSKVESHLADARVYMLTHPKEFDVVDLD-P--YGS-P--SVFLDSAIQSVADGGMLMCTATDMA 231 (581)
Q Consensus 174 ----~~~v~v~~~DA~~~l~~~~~~fDvIdLD-P--yGs-~--~~fld~A~~~l~~gGlL~vTaTD~a 231 (581)
..+|++.+.|+...-. ....||+|+.= = |-. + ...+....++|++||+|++-.++..
T Consensus 180 ~~~ir~~V~F~~~dl~~~~~-~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~E~~ 246 (264)
T smart00138 180 KPELKERVRFAKHNLLAESP-PLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHSESL 246 (264)
T ss_pred ChHHhCcCEEeeccCCCCCC-ccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECcccC
Confidence 0246677777655322 13579999862 1 111 1 2466677789999999999876654
No 184
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=97.25 E-value=0.0002 Score=72.39 Aligned_cols=100 Identities=18% Similarity=0.315 Sum_probs=76.8
Q ss_pred CeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhh-CCCcccEE---
Q 047386 123 PRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLT-HPKEFDVV--- 198 (581)
Q Consensus 123 ~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~-~~~~fDvI--- 198 (581)
.++||+-||||+.|.+.=. -+++++.+|||...++...+ -++- + ...+.|+..|+.. ..++||+|
T Consensus 127 ~~~lDLGCGTGL~G~~lR~---~a~~ltGvDiS~nMl~kA~e----Kg~Y--D--~L~~Aea~~Fl~~~~~er~DLi~Aa 195 (287)
T COG4976 127 RRMLDLGCGTGLTGEALRD---MADRLTGVDISENMLAKAHE----KGLY--D--TLYVAEAVLFLEDLTQERFDLIVAA 195 (287)
T ss_pred ceeeecccCcCcccHhHHH---HHhhccCCchhHHHHHHHHh----ccch--H--HHHHHHHHHHhhhccCCcccchhhh
Confidence 4899999999999998754 26789999999988776543 2332 1 4578899999874 36899999
Q ss_pred eeCCC-CCChHhHHHHHHhccCCCeEEEEeccchhh
Q 047386 199 DLDPY-GSPSVFLDSAIQSVADGGMLMCTATDMAVL 233 (581)
Q Consensus 199 dLDPy-Gs~~~fld~A~~~l~~gGlL~vTaTD~a~L 233 (581)
|+=|| |.-.+++-.|..+|++||++..+..+...-
T Consensus 196 DVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~ 231 (287)
T COG4976 196 DVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDD 231 (287)
T ss_pred hHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCC
Confidence 45577 665677788889999999999987655443
No 185
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=97.24 E-value=0.0019 Score=63.77 Aligned_cols=106 Identities=22% Similarity=0.253 Sum_probs=80.5
Q ss_pred eEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhC--CCcccEE---
Q 047386 124 RVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTH--PKEFDVV--- 198 (581)
Q Consensus 124 ~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~--~~~fDvI--- 198 (581)
.+||.-||.|-+-+..|.+-|+ ..++++|+....+..+.+.+...++. ++.++++||..+|... ...+|-|
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd-~n~iGiE~~~~~v~~a~~~~~~~~l~---Nv~~~~~da~~~l~~~~~~~~v~~i~i~ 95 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPD-INFIGIEIRKKRVAKALRKAEKRGLK---NVRFLRGDARELLRRLFPPGSVDRIYIN 95 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTT-SEEEEEES-HHHHHHHHHHHHHHTTS---SEEEEES-CTTHHHHHSTTTSEEEEEEE
T ss_pred eEEEecCCCCHHHHHHHHHCCC-CCEEEEecchHHHHHHHHHHHhhccc---ceEEEEccHHHHHhhcccCCchheEEEe
Confidence 7999999999999999998775 56999999999999999999999984 8999999999877542 3456666
Q ss_pred eeCCC-CC--------ChHhHHHHHHhccCCCeEEEEeccchhhc
Q 047386 199 DLDPY-GS--------PSVFLDSAIQSVADGGMLMCTATDMAVLC 234 (581)
Q Consensus 199 dLDPy-Gs--------~~~fld~A~~~l~~gGlL~vTaTD~a~Lc 234 (581)
+-||+ .. ..+|++...+.|++||.|.+. ||-..+.
T Consensus 96 FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~-TD~~~y~ 139 (195)
T PF02390_consen 96 FPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFA-TDVEEYA 139 (195)
T ss_dssp S-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEE-ES-HHHH
T ss_pred CCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEE-eCCHHHH
Confidence 56884 21 348999999999999999775 5655543
No 186
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=97.23 E-value=0.0031 Score=66.42 Aligned_cols=104 Identities=24% Similarity=0.218 Sum_probs=72.4
Q ss_pred cCCCCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccE
Q 047386 118 RQLKPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDV 197 (581)
Q Consensus 118 ~~~~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDv 197 (581)
..+.|.+|||+-||.|..++|++.+ ||+.|+++|-++..+-..+-=-++.|.+ ..+ ........-|.. ...||+
T Consensus 112 ~~L~gk~VLDIGC~nGY~~frM~~~--GA~~ViGiDP~~lf~~QF~~i~~~lg~~--~~~-~~lplgvE~Lp~-~~~FDt 185 (315)
T PF08003_consen 112 PDLKGKRVLDIGCNNGYYSFRMLGR--GAKSVIGIDPSPLFYLQFEAIKHFLGQD--PPV-FELPLGVEDLPN-LGAFDT 185 (315)
T ss_pred CCcCCCEEEEecCCCcHHHHHHhhc--CCCEEEEECCChHHHHHHHHHHHHhCCC--ccE-EEcCcchhhccc-cCCcCE
Confidence 3578999999999999999999994 9999999998887655433322333332 122 222233344433 468999
Q ss_pred EeeCC--C--CCChHhHHHHHHhccCCCeEEEEe
Q 047386 198 VDLDP--Y--GSPSVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 198 IdLDP--y--Gs~~~fld~A~~~l~~gGlL~vTa 227 (581)
|+.== | -+|...|...-.+|++||.|.+.+
T Consensus 186 VF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLET 219 (315)
T PF08003_consen 186 VFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLET 219 (315)
T ss_pred EEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEE
Confidence 98543 5 335567888888999999999764
No 187
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.21 E-value=0.0012 Score=69.40 Aligned_cols=84 Identities=17% Similarity=0.175 Sum_probs=66.8
Q ss_pred CCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCC---cccEE
Q 047386 122 PPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPK---EFDVV 198 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~---~fDvI 198 (581)
+..+||+-+|.|..++.++..++...+|+++|.|+.|++.+++++.. . ++++++++|...+...... .||.|
T Consensus 20 g~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~--~ri~~i~~~f~~l~~~l~~~~~~vDgI 94 (296)
T PRK00050 20 DGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---F--GRFTLVHGNFSNLKEVLAEGLGKVDGI 94 (296)
T ss_pred CCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---C--CcEEEEeCCHHHHHHHHHcCCCccCEE
Confidence 45899999999999999998764356899999999999999988753 2 5799999999887644322 79999
Q ss_pred eeCCCCCChHhHH
Q 047386 199 DLDPYGSPSVFLD 211 (581)
Q Consensus 199 dLDPyGs~~~fld 211 (581)
.+|. |..+..+|
T Consensus 95 l~DL-GvSs~Qld 106 (296)
T PRK00050 95 LLDL-GVSSPQLD 106 (296)
T ss_pred EECC-CccccccC
Confidence 9998 33334444
No 188
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=97.19 E-value=0.0011 Score=61.02 Aligned_cols=89 Identities=22% Similarity=0.263 Sum_probs=63.8
Q ss_pred CCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEeeC
Q 047386 122 PPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDLD 201 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdLD 201 (581)
+.+|||+-||+|.++..++.+ |. +|+++|+|+.+++. .. +.....++..... ....||+|..-
T Consensus 23 ~~~vLDiGcG~G~~~~~l~~~--~~-~~~g~D~~~~~~~~---------~~----~~~~~~~~~~~~~-~~~~fD~i~~~ 85 (161)
T PF13489_consen 23 GKRVLDIGCGTGSFLRALAKR--GF-EVTGVDISPQMIEK---------RN----VVFDNFDAQDPPF-PDGSFDLIICN 85 (161)
T ss_dssp TSEEEEESSTTSHHHHHHHHT--TS-EEEEEESSHHHHHH---------TT----SEEEEEECHTHHC-HSSSEEEEEEE
T ss_pred CCEEEEEcCCCCHHHHHHHHh--CC-EEEEEECCHHHHhh---------hh----hhhhhhhhhhhhc-cccchhhHhhH
Confidence 569999999999999888774 66 89999999999988 11 1222222222221 24689999754
Q ss_pred C-C---CCChHhHHHHHHhccCCCeEEEEe
Q 047386 202 P-Y---GSPSVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 202 P-y---Gs~~~fld~A~~~l~~gGlL~vTa 227 (581)
= + ..+..+|....+.|++||+|+++.
T Consensus 86 ~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~ 115 (161)
T PF13489_consen 86 DVLEHLPDPEEFLKELSRLLKPGGYLVISD 115 (161)
T ss_dssp SSGGGSSHHHHHHHHHHHCEEEEEEEEEEE
T ss_pred HHHhhcccHHHHHHHHHHhcCCCCEEEEEE
Confidence 2 1 124578888889999999999985
No 189
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=97.15 E-value=0.0026 Score=65.64 Aligned_cols=84 Identities=15% Similarity=0.047 Sum_probs=64.8
Q ss_pred CCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEeeC
Q 047386 122 PPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDLD 201 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdLD 201 (581)
+.+|||+-||+|.++..++.. +. +|+++|+|+.+++.+++|+.. .+++++++|+..+-.. ...+|.|+..
T Consensus 43 ~~~VLEiG~G~G~lt~~L~~~--~~-~v~avE~d~~~~~~~~~~~~~------~~v~~i~~D~~~~~~~-~~~~~~vv~N 112 (272)
T PRK00274 43 GDNVLEIGPGLGALTEPLLER--AA-KVTAVEIDRDLAPILAETFAE------DNLTIIEGDALKVDLS-ELQPLKVVAN 112 (272)
T ss_pred cCeEEEeCCCccHHHHHHHHh--CC-cEEEEECCHHHHHHHHHhhcc------CceEEEEChhhcCCHH-HcCcceEEEe
Confidence 568999999999999999985 44 899999999999999988742 3689999999876321 1115888887
Q ss_pred C-CCCChHhHHHHHH
Q 047386 202 P-YGSPSVFLDSAIQ 215 (581)
Q Consensus 202 P-yGs~~~fld~A~~ 215 (581)
| |.-.++++..-+.
T Consensus 113 lPY~iss~ii~~~l~ 127 (272)
T PRK00274 113 LPYNITTPLLFHLLE 127 (272)
T ss_pred CCccchHHHHHHHHh
Confidence 6 6666777765443
No 190
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=97.13 E-value=0.004 Score=64.02 Aligned_cols=102 Identities=25% Similarity=0.279 Sum_probs=78.2
Q ss_pred CCCeEEEecCcccHHHHHHhhhcCCc-----cEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcc
Q 047386 121 KPPRVLEALSASGLRALRYAREVEGI-----GQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEF 195 (581)
Q Consensus 121 ~~~~VLDafsgSG~rgIr~a~E~~Ga-----~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~f 195 (581)
.+.+|||+-+|||=.++|++..+... .+|+..||||.-+...++-.+..++.....++++++||..+=- ....|
T Consensus 100 ~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpF-dd~s~ 178 (296)
T KOG1540|consen 100 KGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPF-DDDSF 178 (296)
T ss_pred CCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCC-CCCcc
Confidence 46799999999999999999876422 7899999999999999998887787643458999999987742 23456
Q ss_pred cEEeeCCCCC-----ChHhHHHHHHhccCCCeEE
Q 047386 196 DVVDLDPYGS-----PSVFLDSAIQSVADGGMLM 224 (581)
Q Consensus 196 DvIdLDPyGs-----~~~fld~A~~~l~~gGlL~ 224 (581)
|..-+- ||- +..-|..|.+.|++||.+.
T Consensus 179 D~yTia-fGIRN~th~~k~l~EAYRVLKpGGrf~ 211 (296)
T KOG1540|consen 179 DAYTIA-FGIRNVTHIQKALREAYRVLKPGGRFS 211 (296)
T ss_pred eeEEEe-cceecCCCHHHHHHHHHHhcCCCcEEE
Confidence 665432 221 2356777889999999765
No 191
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=97.09 E-value=5.1e-05 Score=65.32 Aligned_cols=94 Identities=18% Similarity=0.187 Sum_probs=57.1
Q ss_pred EEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhC-CCcccEEeeC-CC
Q 047386 126 LEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTH-PKEFDVVDLD-PY 203 (581)
Q Consensus 126 LDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~-~~~fDvIdLD-Py 203 (581)
||+-||+|.+....+.+.+ ..+++++|+|+.+++.+++.+...... .......+........ .+.||+|++= -.
T Consensus 1 LdiGcG~G~~~~~l~~~~~-~~~~~~~D~s~~~l~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl 76 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELP-DARYTGVDISPSMLERARERLAELGND---NFERLRFDVLDLFDYDPPESFDLVVASNVL 76 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT------EEEEE--SSS---CCC----SEEEEE-TT
T ss_pred CEeCccChHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHhhhcCCc---ceeEEEeecCChhhcccccccceehhhhhH
Confidence 7999999999999998764 457999999999999888888877653 2233333322222211 2589999643 21
Q ss_pred ---CCChHhHHHHHHhccCCCeE
Q 047386 204 ---GSPSVFLDSAIQSVADGGML 223 (581)
Q Consensus 204 ---Gs~~~fld~A~~~l~~gGlL 223 (581)
.....++..+.++|++||+|
T Consensus 77 ~~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 77 HHLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S--S-HHHHHHHHTTT-TSS-EE
T ss_pred hhhhhHHHHHHHHHHHcCCCCCC
Confidence 22346778888899999986
No 192
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=96.91 E-value=0.0024 Score=68.12 Aligned_cols=111 Identities=23% Similarity=0.239 Sum_probs=75.3
Q ss_pred CCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhC-------CCCCCcEEEEehhHHHH-Hhh---
Q 047386 122 PPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNG-------SVACSKVESHLADARVY-MLT--- 190 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~-------~~~~~~v~v~~~DA~~~-l~~--- 190 (581)
+.+|||+.||=|+==.-|.. .++..++++|++..+++.+++=.+..+ ....-...++.+|++.- +..
T Consensus 63 ~~~VLDl~CGkGGDL~Kw~~--~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 63 GLTVLDLCCGKGGDLQKWQK--AKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp T-EEEEET-TTTTTHHHHHH--TT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCeEEEecCCCchhHHHHHh--cCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 56899999999998888877 489999999999999999887662211 00001356788888632 111
Q ss_pred -CCCcccEEeeCC---C--CC---ChHhHHHHHHhccCCCeEEEEeccchhhc
Q 047386 191 -HPKEFDVVDLDP---Y--GS---PSVFLDSAIQSVADGGMLMCTATDMAVLC 234 (581)
Q Consensus 191 -~~~~fDvIdLDP---y--Gs---~~~fld~A~~~l~~gGlL~vTaTD~a~Lc 234 (581)
...+||+|-+== | .+ ...||..+-.+|++||+++.|..|...|.
T Consensus 141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~i~ 193 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSDEIV 193 (331)
T ss_dssp STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHH
T ss_pred ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHHHHH
Confidence 125899995432 2 22 23588888899999999999999988884
No 193
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=96.88 E-value=0.0053 Score=62.26 Aligned_cols=101 Identities=13% Similarity=0.174 Sum_probs=69.8
Q ss_pred CCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHH-------hC--CCCCCcEEEEehhHHHHHh--h
Q 047386 122 PPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKF-------NG--SVACSKVESHLADARVYML--T 190 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~-------N~--~~~~~~v~v~~~DA~~~l~--~ 190 (581)
+.+||+.+||.|.=.+-.|.. |.. |+++|+|+.|++...+...+ +. ......+++.++|.+.+=. .
T Consensus 44 ~~rvLvPgCGkg~D~~~LA~~--G~~-V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~ 120 (226)
T PRK13256 44 SSVCLIPMCGCSIDMLFFLSK--GVK-VIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIAN 120 (226)
T ss_pred CCeEEEeCCCChHHHHHHHhC--CCc-EEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccc
Confidence 469999999999999999884 765 99999999999987552100 00 0001468999999998732 1
Q ss_pred CCCcccEEe-------eCCCCCChHhHHHHHHhccCCCeEEEE
Q 047386 191 HPKEFDVVD-------LDPYGSPSVFLDSAIQSVADGGMLMCT 226 (581)
Q Consensus 191 ~~~~fDvId-------LDPyGs~~~fld~A~~~l~~gGlL~vT 226 (581)
....||+|. | |+.....+.....++|++||.|.+-
T Consensus 121 ~~~~fD~VyDra~~~Al-pp~~R~~Y~~~l~~lL~pgg~llll 162 (226)
T PRK13256 121 NLPVFDIWYDRGAYIAL-PNDLRTNYAKMMLEVCSNNTQILLL 162 (226)
T ss_pred ccCCcCeeeeehhHhcC-CHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 224789862 2 2222346777778889998875554
No 194
>PRK06202 hypothetical protein; Provisional
Probab=96.84 E-value=0.0022 Score=64.07 Aligned_cols=94 Identities=23% Similarity=0.236 Sum_probs=60.9
Q ss_pred CCeEEEecCcccHHHHHHhhhc--CCc-cEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEE
Q 047386 122 PPRVLEALSASGLRALRYAREV--EGI-GQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVV 198 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~--~Ga-~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvI 198 (581)
+.+|||+-||+|..+...+... .|. .+|+++|+|+.+++.+++++..+++ ++...|+..+.. ....||+|
T Consensus 61 ~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~------~~~~~~~~~l~~-~~~~fD~V 133 (232)
T PRK06202 61 PLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGV------TFRQAVSDELVA-EGERFDVV 133 (232)
T ss_pred CcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCC------eEEEEecccccc-cCCCccEE
Confidence 4589999999999988876532 132 3799999999999999998775554 333444433322 24689999
Q ss_pred eeCC-CC-CCh----HhHHHHHHhccCCCeE
Q 047386 199 DLDP-YG-SPS----VFLDSAIQSVADGGML 223 (581)
Q Consensus 199 dLDP-yG-s~~----~fld~A~~~l~~gGlL 223 (581)
..-- +- .+. .++..+.+.++ |+++
T Consensus 134 ~~~~~lhh~~d~~~~~~l~~~~r~~~-~~~~ 163 (232)
T PRK06202 134 TSNHFLHHLDDAEVVRLLADSAALAR-RLVL 163 (232)
T ss_pred EECCeeecCChHHHHHHHHHHHHhcC-eeEE
Confidence 8764 21 122 35555555554 4443
No 195
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=96.81 E-value=0.0099 Score=60.52 Aligned_cols=83 Identities=20% Similarity=0.183 Sum_probs=64.7
Q ss_pred CCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCccc---EE
Q 047386 122 PPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFD---VV 198 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fD---vI 198 (581)
+.+|||+.||+|.++...+.. + ..|+++|+|+.+++.+++++.. . .+++++++|+..+-.. .|| +|
T Consensus 30 ~~~VLEiG~G~G~lt~~L~~~--~-~~v~~iE~d~~~~~~l~~~~~~---~--~~v~v~~~D~~~~~~~---~~d~~~~v 98 (253)
T TIGR00755 30 GDVVLEIGPGLGALTEPLLKR--A-KKVTAIEIDPRLAEILRKLLSL---Y--ERLEVIEGDALKVDLP---DFPKQLKV 98 (253)
T ss_pred cCEEEEeCCCCCHHHHHHHHh--C-CcEEEEECCHHHHHHHHHHhCc---C--CcEEEEECchhcCChh---HcCCcceE
Confidence 568999999999999999985 4 4699999999999999988753 1 4689999999765432 466 88
Q ss_pred eeCC-CCCChHhHHHHHH
Q 047386 199 DLDP-YGSPSVFLDSAIQ 215 (581)
Q Consensus 199 dLDP-yGs~~~fld~A~~ 215 (581)
+-.+ |.-+.+++...+.
T Consensus 99 vsNlPy~i~~~il~~ll~ 116 (253)
T TIGR00755 99 VSNLPYNISSPLIFKLLE 116 (253)
T ss_pred EEcCChhhHHHHHHHHhc
Confidence 8885 6656677766553
No 196
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=96.80 E-value=0.00072 Score=67.94 Aligned_cols=102 Identities=21% Similarity=0.218 Sum_probs=70.4
Q ss_pred CCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHH-HHHHHHhCCC--------CCCcEEEEehhHHHHHhhCC
Q 047386 122 PPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEAC-RRNIKFNGSV--------ACSKVESHLADARVYMLTHP 192 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i-~~Ni~~N~~~--------~~~~v~v~~~DA~~~l~~~~ 192 (581)
+.+||..+||.|.=.+..|.. |- .|+++|+|+.|++.+ ++|-....+. ..++|+++++|.+.+-....
T Consensus 38 ~~rvLvPgCG~g~D~~~La~~--G~-~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~ 114 (218)
T PF05724_consen 38 GGRVLVPGCGKGYDMLWLAEQ--GH-DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDV 114 (218)
T ss_dssp SEEEEETTTTTSCHHHHHHHT--TE-EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCH
T ss_pred CCeEEEeCCCChHHHHHHHHC--CC-eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhc
Confidence 458999999999999988884 75 799999999999987 3332211110 12468999999988654333
Q ss_pred CcccEEe-------eCCCCCChHhHHHHHHhccCCCe-EEEEe
Q 047386 193 KEFDVVD-------LDPYGSPSVFLDSAIQSVADGGM-LMCTA 227 (581)
Q Consensus 193 ~~fDvId-------LDPyGs~~~fld~A~~~l~~gGl-L~vTa 227 (581)
.+||+|. |+| .....+.....++|++||. |.+|-
T Consensus 115 g~fD~iyDr~~l~Alpp-~~R~~Ya~~l~~ll~p~g~~lLi~l 156 (218)
T PF05724_consen 115 GKFDLIYDRTFLCALPP-EMRERYAQQLASLLKPGGRGLLITL 156 (218)
T ss_dssp HSEEEEEECSSTTTS-G-GGHHHHHHHHHHCEEEEEEEEEEEE
T ss_pred CCceEEEEecccccCCH-HHHHHHHHHHHHHhCCCCcEEEEEE
Confidence 4799983 222 2234688888899999998 44443
No 197
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=96.80 E-value=0.0063 Score=60.80 Aligned_cols=156 Identities=21% Similarity=0.248 Sum_probs=104.8
Q ss_pred eEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhh-------CCCccc
Q 047386 124 RVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLT-------HPKEFD 196 (581)
Q Consensus 124 ~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~-------~~~~fD 196 (581)
+|||+=||||-=+..+|..+|... =.--|.++.....|+..+...+++ +-...+.-|+..---. ....||
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~-WqPSD~~~~~~~sI~a~~~~~~~~--Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D 104 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLT-WQPSDPDDNLRPSIRAWIAEAGLP--NVRPPLALDVSAPPWPWELPAPLSPESFD 104 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCE-EcCCCCChHHHhhHHHHHHhcCCc--ccCCCeEeecCCCCCccccccccCCCCcc
Confidence 599999999999999999998764 456899999999999999988775 2223455555432100 134788
Q ss_pred EEe------eCCCCCChHhHHHHHHhccCCCeEEEEeccchhhcCCC------cchhhhhccCccCCCccchhhhHHHHH
Q 047386 197 VVD------LDPYGSPSVFLDSAIQSVADGGMLMCTATDMAVLCGGN------GEVCYSKYGSYPLRGKYCHEMALRILL 264 (581)
Q Consensus 197 vId------LDPyGs~~~fld~A~~~l~~gGlL~vTaTD~a~Lcg~~------~~~c~rkYG~~~~k~~~~hE~~lRill 264 (581)
.|+ +=|+.....++..|-++|++||+|++. |-+ .--+-..+.. .+|.. ..+.|||.+-
T Consensus 105 ~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~Y--------GPF~~~G~~ts~SN~~FD~-sLr~r-dp~~GiRD~e 174 (204)
T PF06080_consen 105 AIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLY--------GPFNRDGKFTSESNAAFDA-SLRSR-DPEWGIRDIE 174 (204)
T ss_pred eeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEe--------CCcccCCEeCCcHHHHHHH-HHhcC-CCCcCccCHH
Confidence 885 345544456778888999999999985 322 1111111111 12221 2468999987
Q ss_pred HHHHHHHHHcCCceEEEeecccCceEEEE
Q 047386 265 ACIESHANRYKRYIEPVLSVQMDFYVRVF 293 (581)
Q Consensus 265 ~~i~~~Aa~~~r~i~Plls~s~dhY~Rvf 293 (581)
.|...|.+.|..++-....+..-.+-||
T Consensus 175 -~v~~lA~~~GL~l~~~~~MPANN~~Lvf 202 (204)
T PF06080_consen 175 -DVEALAAAHGLELEEDIDMPANNLLLVF 202 (204)
T ss_pred -HHHHHHHHCCCccCcccccCCCCeEEEE
Confidence 5889999999987766655555444343
No 198
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=96.66 E-value=0.015 Score=60.86 Aligned_cols=105 Identities=17% Similarity=0.160 Sum_probs=80.0
Q ss_pred CCCeEEEecCcccHHHHHHhhhcCC-ccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHH--HhhCCCcccE
Q 047386 121 KPPRVLEALSASGLRALRYAREVEG-IGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVY--MLTHPKEFDV 197 (581)
Q Consensus 121 ~~~~VLDafsgSG~rgIr~a~E~~G-a~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~--l~~~~~~fDv 197 (581)
.+.+|||.-||.|--=+.++...+. +.+|..+|.|+..++.-++=++.+|+. +.+++.++||+.. +.......++
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~--~i~~f~~~dAfd~~~l~~l~p~P~l 212 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLE--DIARFEQGDAFDRDSLAALDPAPTL 212 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCc--cceEEEecCCCCHhHhhccCCCCCE
Confidence 3569999999999888888776555 679999999999999999999999997 5679999999875 3333445677
Q ss_pred EeeCC----CCCCh---HhHHHHHHhccCCCeEEEEe
Q 047386 198 VDLDP----YGSPS---VFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 198 IdLDP----yGs~~---~fld~A~~~l~~gGlL~vTa 227 (581)
+++== |.... .-+.....++.+||+|+.|.
T Consensus 213 ~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTg 249 (311)
T PF12147_consen 213 AIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTG 249 (311)
T ss_pred EEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcC
Confidence 76543 33211 12334456899999999984
No 199
>PHA01634 hypothetical protein
Probab=96.65 E-value=0.0052 Score=57.26 Aligned_cols=78 Identities=13% Similarity=0.131 Sum_probs=62.5
Q ss_pred CCCCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEE
Q 047386 119 QLKPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVV 198 (581)
Q Consensus 119 ~~~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvI 198 (581)
.+.+.+|||.-|+.|-.+|.++. +||++|++.+.++.-.+.+++|++.|++- ++..... + + ...-..||+-
T Consensus 26 dvk~KtV~dIGA~iGdSaiYF~l--~GAK~Vva~E~~~kl~k~~een~k~nnI~--DK~v~~~-e---W-~~~Y~~~Di~ 96 (156)
T PHA01634 26 NVYQRTIQIVGADCGSSALYFLL--RGASFVVQYEKEEKLRKKWEEVCAYFNIC--DKAVMKG-E---W-NGEYEDVDIF 96 (156)
T ss_pred eecCCEEEEecCCccchhhHHhh--cCccEEEEeccCHHHHHHHHHHhhhheee--eceeecc-c---c-cccCCCcceE
Confidence 45688999999999999999998 69999999999999999999999999875 4443222 1 1 1112578999
Q ss_pred eeCCCCC
Q 047386 199 DLDPYGS 205 (581)
Q Consensus 199 dLDPyGs 205 (581)
.+|-=|.
T Consensus 97 ~iDCeGC 103 (156)
T PHA01634 97 VMDCEGC 103 (156)
T ss_pred EEEccch
Confidence 8888776
No 200
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=96.58 E-value=0.0023 Score=65.11 Aligned_cols=78 Identities=24% Similarity=0.329 Sum_probs=52.1
Q ss_pred eEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCC------CCcEEEEehhHHHHHhhCCCcccE
Q 047386 124 RVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVA------CSKVESHLADARVYMLTHPKEFDV 197 (581)
Q Consensus 124 ~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~------~~~v~v~~~DA~~~l~~~~~~fDv 197 (581)
+||||-+|-|.=|+-+|.- |. +|++++.||-...+++.-++.-.-.. ..+++++++|+..+|......|||
T Consensus 78 ~VLDaTaGLG~Da~vlA~~--G~-~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DV 154 (234)
T PF04445_consen 78 SVLDATAGLGRDAFVLASL--GC-KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDV 154 (234)
T ss_dssp -EEETT-TTSHHHHHHHHH--T---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SE
T ss_pred EEEECCCcchHHHHHHHcc--CC-eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCE
Confidence 8999999999999998863 75 69999999999988886655431111 147999999999999744578999
Q ss_pred EeeCC-CC
Q 047386 198 VDLDP-YG 204 (581)
Q Consensus 198 IdLDP-yG 204 (581)
|.+|| |-
T Consensus 155 VY~DPMFp 162 (234)
T PF04445_consen 155 VYFDPMFP 162 (234)
T ss_dssp EEE--S--
T ss_pred EEECCCCC
Confidence 99999 63
No 201
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=96.52 E-value=0.0088 Score=61.17 Aligned_cols=107 Identities=20% Similarity=0.321 Sum_probs=74.7
Q ss_pred CCCCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCC-------------------------
Q 047386 119 QLKPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVA------------------------- 173 (581)
Q Consensus 119 ~~~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~------------------------- 173 (581)
.+.+..+||.-|-+|.+++..|+.. |...|+.+|||+.-++.+++|+++-.-..
T Consensus 56 ~f~~~~~LDIGCNsG~lt~~iak~F-~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~ 134 (288)
T KOG2899|consen 56 WFEPKQALDIGCNSGFLTLSIAKDF-GPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEAD 134 (288)
T ss_pred ccCcceeEeccCCcchhHHHHHHhh-ccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccc
Confidence 4667889999999999999999975 78999999999999999999998542100
Q ss_pred -------CCcEEE----EehhHHHHHhhCCCcccEEeeCCC--------CC--ChHhHHHHHHhccCCCeEEEE
Q 047386 174 -------CSKVES----HLADARVYMLTHPKEFDVVDLDPY--------GS--PSVFLDSAIQSVADGGMLMCT 226 (581)
Q Consensus 174 -------~~~v~v----~~~DA~~~l~~~~~~fDvIdLDPy--------Gs--~~~fld~A~~~l~~gGlL~vT 226 (581)
.+++.+ +..+..++|.....+||+|..=.- |. -..|+...-++|.+||+|.++
T Consensus 135 ~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 135 RAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred ccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 000000 001222233223468999965432 11 136777788899999999997
No 202
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=96.50 E-value=0.00089 Score=58.56 Aligned_cols=96 Identities=23% Similarity=0.279 Sum_probs=44.1
Q ss_pred EecCcccHHHHHHhhhcCCc--cEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCC-CcccEEeeCCC
Q 047386 127 EALSASGLRALRYAREVEGI--GQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHP-KEFDVVDLDPY 203 (581)
Q Consensus 127 DafsgSG~rgIr~a~E~~Ga--~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~-~~fDvIdLDPy 203 (581)
|+-++.|.-++.+++-++.. .+++++|..+. .+..+++++..++. ++++++++|...++.... .+||+|++|=-
T Consensus 2 EiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~--~~~~~~~g~s~~~l~~~~~~~~dli~iDg~ 78 (106)
T PF13578_consen 2 EIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLS--DRVEFIQGDSPDFLPSLPDGPIDLIFIDGD 78 (106)
T ss_dssp -------------------------EEEESS-------------GGG---BTEEEEES-THHHHHHHHH--EEEEEEES-
T ss_pred ccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCC--CeEEEEEcCcHHHHHHcCCCCEEEEEECCC
Confidence 44455666666665533322 37999999996 34445555545654 579999999988876543 78999999953
Q ss_pred ---CCChHhHHHHHHhccCCCeEEE
Q 047386 204 ---GSPSVFLDSAIQSVADGGMLMC 225 (581)
Q Consensus 204 ---Gs~~~fld~A~~~l~~gGlL~v 225 (581)
......+..+...|++||+|++
T Consensus 79 H~~~~~~~dl~~~~~~l~~ggviv~ 103 (106)
T PF13578_consen 79 HSYEAVLRDLENALPRLAPGGVIVF 103 (106)
T ss_dssp --HHHHHHHHHHHGGGEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 2233456667788999999876
No 203
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=96.40 E-value=0.01 Score=54.25 Aligned_cols=57 Identities=25% Similarity=0.262 Sum_probs=47.8
Q ss_pred eEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhH
Q 047386 124 RVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADA 184 (581)
Q Consensus 124 ~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA 184 (581)
+|||+-|++|..++.++...++ .+|+++|.++.+++.+++|++.|++. ++.+++..+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~-~~v~~~E~~~~~~~~l~~~~~~n~~~---~v~~~~~al 57 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAE-GRVIAFEPLPDAYEILEENVKLNNLP---NVVLLNAAV 57 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCC-CEEEEEecCHHHHHHHHHHHHHcCCC---cEEEEEeee
Confidence 4899999999999999985332 38999999999999999999999974 477766543
No 204
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=96.36 E-value=0.0084 Score=60.84 Aligned_cols=93 Identities=18% Similarity=0.118 Sum_probs=57.6
Q ss_pred CCCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHH-HHHHHHHhCCCCCCcEE-EEehhHHHHHhhCCCcccE
Q 047386 120 LKPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEA-CRRNIKFNGSVACSKVE-SHLADARVYMLTHPKEFDV 197 (581)
Q Consensus 120 ~~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~-i~~Ni~~N~~~~~~~v~-v~~~DA~~~l~~~~~~fDv 197 (581)
+.+.+|||+-||||.++..++. .|+.+|+++|+++.-+.. +++|.+ +. ....|+. .+....-..|+
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~--~ga~~v~avD~~~~~l~~~l~~~~~---------v~~~~~~ni~-~~~~~~~~~d~ 141 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQ--KGAKEVYGVDVGYNQLAEKLRQDER---------VKVLERTNIR-YVTPADIFPDF 141 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHH--cCCCEEEEEeCCHHHHHHHHhcCCC---------eeEeecCCcc-cCCHhHcCCCc
Confidence 4677999999999999999988 489999999999965443 333322 21 2222333 11110111355
Q ss_pred EeeCC-CCCChHhHHHHHHhccCCCeEEE
Q 047386 198 VDLDP-YGSPSVFLDSAIQSVADGGMLMC 225 (581)
Q Consensus 198 IdLDP-yGs~~~fld~A~~~l~~gGlL~v 225 (581)
+..|= |-|-.-.+....++|++ |.+.+
T Consensus 142 ~~~DvsfiS~~~~l~~i~~~l~~-~~~~~ 169 (228)
T TIGR00478 142 ATFDVSFISLISILPELDLLLNP-NDLTL 169 (228)
T ss_pred eeeeEEEeehHhHHHHHHHHhCc-CeEEE
Confidence 55553 55544556667778888 66554
No 205
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=96.33 E-value=0.023 Score=59.02 Aligned_cols=101 Identities=22% Similarity=0.174 Sum_probs=76.4
Q ss_pred CCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhh-CCCcccEEe
Q 047386 121 KPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLT-HPKEFDVVD 199 (581)
Q Consensus 121 ~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~-~~~~fDvId 199 (581)
.|.+||++-.|||.+|..+++-+.--.+++..|.+..-.+...+-.+.-++. +++.+.+.|++..=.. ....+|.|+
T Consensus 105 PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~--~~vt~~hrDVc~~GF~~ks~~aDaVF 182 (314)
T KOG2915|consen 105 PGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIG--DNVTVTHRDVCGSGFLIKSLKADAVF 182 (314)
T ss_pred CCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCC--cceEEEEeecccCCccccccccceEE
Confidence 4779999999999999999997644579999999999999999999999986 7899999998753111 135799999
Q ss_pred eCCCCCChHhHHHHHHhccCCC-eEE
Q 047386 200 LDPYGSPSVFLDSAIQSVADGG-MLM 224 (581)
Q Consensus 200 LDPyGs~~~fld~A~~~l~~gG-lL~ 224 (581)
||=+. |..-+..|...++.+| .||
T Consensus 183 LDlPa-Pw~AiPha~~~lk~~g~r~c 207 (314)
T KOG2915|consen 183 LDLPA-PWEAIPHAAKILKDEGGRLC 207 (314)
T ss_pred EcCCC-hhhhhhhhHHHhhhcCceEE
Confidence 99543 2223333444566555 443
No 206
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=96.23 E-value=0.058 Score=54.81 Aligned_cols=107 Identities=21% Similarity=0.184 Sum_probs=87.5
Q ss_pred CeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCC-C-cccEE--
Q 047386 123 PRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHP-K-EFDVV-- 198 (581)
Q Consensus 123 ~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~-~-~fDvI-- 198 (581)
..+||.-||.|-+=+..|.+-|.. -.+++|+....+..+.+=+...++. ++.++++||..+|.... . ..|-|
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~-nfiGiEi~~~~v~~~l~k~~~~~l~---Nlri~~~DA~~~l~~~~~~~sl~~I~i 125 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEK-NFLGIEIRVPGVAKALKKIKELGLK---NLRLLCGDAVEVLDYLIPDGSLDKIYI 125 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCC-CEEEEEEehHHHHHHHHHHHHcCCC---cEEEEcCCHHHHHHhcCCCCCeeEEEE
Confidence 479999999999999999986654 6899999999999999999999884 79999999999997642 2 45555
Q ss_pred -eeCCC-CC--------ChHhHHHHHHhccCCCeEEEEeccchhhc
Q 047386 199 -DLDPY-GS--------PSVFLDSAIQSVADGGMLMCTATDMAVLC 234 (581)
Q Consensus 199 -dLDPy-Gs--------~~~fld~A~~~l~~gGlL~vTaTD~a~Lc 234 (581)
|-||. .. ..+|+....+.|++||.|++. ||...+.
T Consensus 126 ~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~a-TD~~~y~ 170 (227)
T COG0220 126 NFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFA-TDNEEYF 170 (227)
T ss_pred ECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEE-ecCHHHH
Confidence 56894 22 238999999999999999874 6776654
No 207
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=96.13 E-value=0.029 Score=55.14 Aligned_cols=97 Identities=22% Similarity=0.200 Sum_probs=81.3
Q ss_pred eEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEeeCCC
Q 047386 124 RVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDLDPY 203 (581)
Q Consensus 124 ~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdLDPy 203 (581)
++||+-||-|.=||-+|--.|. .+|+.+|.+..=+..++.=+...+++ +++++++.+.. ......||+|..=-+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~-~~~~LvEs~~KK~~FL~~~~~~L~L~---nv~v~~~R~E~--~~~~~~fd~v~aRAv 124 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPD-LQVTLVESVGKKVAFLKEVVRELGLS---NVEVINGRAEE--PEYRESFDVVTARAV 124 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TT-SEEEEEESSHHHHHHHHHHHHHHT-S---SEEEEES-HHH--TTTTT-EEEEEEESS
T ss_pred eEEecCCCCCChhHHHHHhCCC-CcEEEEeCCchHHHHHHHHHHHhCCC---CEEEEEeeecc--cccCCCccEEEeehh
Confidence 7999999999999999876554 56999999999999999999999995 79999999998 233578999998888
Q ss_pred CCChHhHHHHHHhccCCCeEEEE
Q 047386 204 GSPSVFLDSAIQSVADGGMLMCT 226 (581)
Q Consensus 204 Gs~~~fld~A~~~l~~gGlL~vT 226 (581)
+....++.-+...+++||.++.-
T Consensus 125 ~~l~~l~~~~~~~l~~~G~~l~~ 147 (184)
T PF02527_consen 125 APLDKLLELARPLLKPGGRLLAY 147 (184)
T ss_dssp SSHHHHHHHHGGGEEEEEEEEEE
T ss_pred cCHHHHHHHHHHhcCCCCEEEEE
Confidence 87778888889999999988775
No 208
>PRK05785 hypothetical protein; Provisional
Probab=96.11 E-value=0.035 Score=55.85 Aligned_cols=85 Identities=16% Similarity=0.154 Sum_probs=59.7
Q ss_pred CCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEeeC
Q 047386 122 PPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDLD 201 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdLD 201 (581)
+.+|||+-||||..+...+... + ..|+++|+|+..++..++. . ..+++|+..+ .-....||+|.+-
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~-~-~~v~gvD~S~~Ml~~a~~~-----~------~~~~~d~~~l-p~~d~sfD~v~~~ 117 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVF-K-YYVVALDYAENMLKMNLVA-----D------DKVVGSFEAL-PFRDKSFDVVMSS 117 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhc-C-CEEEEECCCHHHHHHHHhc-----c------ceEEechhhC-CCCCCCEEEEEec
Confidence 4589999999999998888753 3 4899999999999987653 1 2357787654 2224689999863
Q ss_pred C----CCCChHhHHHHHHhccCC
Q 047386 202 P----YGSPSVFLDSAIQSVADG 220 (581)
Q Consensus 202 P----yGs~~~fld~A~~~l~~g 220 (581)
- +..+...+....+.|++.
T Consensus 118 ~~l~~~~d~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 118 FALHASDNIEKVIAEFTRVSRKQ 140 (226)
T ss_pred ChhhccCCHHHHHHHHHHHhcCc
Confidence 2 111234566666778874
No 209
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=96.09 E-value=0.17 Score=51.18 Aligned_cols=143 Identities=22% Similarity=0.168 Sum_probs=110.1
Q ss_pred CCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEeeC
Q 047386 122 PPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDLD 201 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdLD 201 (581)
+.+++|.-||-|.=||-.|--.|..+ |+.+|.+..=+..++.=.+..+++ +++++++.|..+-..... ||+|..=
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~-vtLles~~Kk~~FL~~~~~eL~L~---nv~i~~~RaE~~~~~~~~-~D~vtsR 142 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLK-VTLLESLGKKIAFLREVKKELGLE---NVEIVHGRAEEFGQEKKQ-YDVVTSR 142 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCc-EEEEccCchHHHHHHHHHHHhCCC---CeEEehhhHhhccccccc-CcEEEee
Confidence 46999999999999999885547766 999999999999999999999984 799999999888643222 9999888
Q ss_pred CCCCChHhHHHHHHhccCCCeEEEEeccchhhcCCCcchhhhhccCccCCCccchhhhHHHHHHHHHHHHHHcCCceEEE
Q 047386 202 PYGSPSVFLDSAIQSVADGGMLMCTATDMAVLCGGNGEVCYSKYGSYPLRGKYCHEMALRILLACIESHANRYKRYIEPV 281 (581)
Q Consensus 202 PyGs~~~fld~A~~~l~~gGlL~vTaTD~a~Lcg~~~~~c~rkYG~~~~k~~~~hE~~lRill~~i~~~Aa~~~r~i~Pl 281 (581)
-+++-..+.+-+..+++.||.+.+- +=++.+--+..+..+....+..++-+
T Consensus 143 Ava~L~~l~e~~~pllk~~g~~~~~-----------------------------k~~~~~~e~~e~~~a~~~~~~~~~~~ 193 (215)
T COG0357 143 AVASLNVLLELCLPLLKVGGGFLAY-----------------------------KGLAGKDELPEAEKAILPLGGQVEKV 193 (215)
T ss_pred hccchHHHHHHHHHhcccCCcchhh-----------------------------hHHhhhhhHHHHHHHHHhhcCcEEEE
Confidence 8877778888899999997765331 11444455777778888888887765
Q ss_pred --eecccCceEEEEEEEEc
Q 047386 282 --LSVQMDFYVRVFVRIYT 298 (581)
Q Consensus 282 --ls~s~dhY~RvfVrV~~ 298 (581)
+..+...+-|..+-+.+
T Consensus 194 ~~~~~p~~~~~r~l~ii~~ 212 (215)
T COG0357 194 FSLTVPELDGERHLVIIRK 212 (215)
T ss_pred EEeecCCCCCceEEEEEec
Confidence 44555566676555544
No 210
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=96.05 E-value=0.0073 Score=62.09 Aligned_cols=68 Identities=24% Similarity=0.288 Sum_probs=49.9
Q ss_pred eEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhC-CCcccEEeeCC
Q 047386 124 RVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTH-PKEFDVVDLDP 202 (581)
Q Consensus 124 ~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~-~~~fDvIdLDP 202 (581)
+++|+|||.|++++-+-. .|.+.|+++|+|+.|+++.+.|.. .+..+|...+-... +..+|+|..=|
T Consensus 2 ~~~dlFsG~Gg~~~g~~~--ag~~~~~a~e~~~~a~~~y~~N~~----------~~~~~Di~~~~~~~l~~~~D~l~ggp 69 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQ--AGFEVVWAVEIDPDACETYKANFP----------EVICGDITEIDPSDLPKDVDLLIGGP 69 (335)
T ss_dssp EEEEET-TTTHHHHHHHH--TTEEEEEEEESSHHHHHHHHHHHT----------EEEESHGGGCHHHHHHHT-SEEEEE-
T ss_pred cEEEEccCccHHHHHHHh--cCcEEEEEeecCHHHHHhhhhccc----------ccccccccccccccccccceEEEecc
Confidence 699999999999887766 488899999999999999999987 24566665543221 11489998887
Q ss_pred C
Q 047386 203 Y 203 (581)
Q Consensus 203 y 203 (581)
+
T Consensus 70 P 70 (335)
T PF00145_consen 70 P 70 (335)
T ss_dssp -
T ss_pred C
Confidence 5
No 211
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=96.03 E-value=0.039 Score=53.63 Aligned_cols=90 Identities=23% Similarity=0.245 Sum_probs=60.2
Q ss_pred CCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHh-hCCCcccEEee
Q 047386 122 PPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYML-THPKEFDVVDL 200 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~-~~~~~fDvIdL 200 (581)
+.+|||+.||+|..+..++.. .+ ..++++|+++.+++.+++ ++ ++++++|+...+. .....||+|++
T Consensus 14 ~~~iLDiGcG~G~~~~~l~~~-~~-~~~~giD~s~~~i~~a~~----~~------~~~~~~d~~~~l~~~~~~sfD~Vi~ 81 (194)
T TIGR02081 14 GSRVLDLGCGDGELLALLRDE-KQ-VRGYGIEIDQDGVLACVA----RG------VNVIQGDLDEGLEAFPDKSFDYVIL 81 (194)
T ss_pred CCEEEEeCCCCCHHHHHHHhc-cC-CcEEEEeCCHHHHHHHHH----cC------CeEEEEEhhhcccccCCCCcCEEEE
Confidence 458999999999998887764 23 358999999998877653 23 3577888876432 22457999987
Q ss_pred CC-C---CCChHhHHHHHHhccCCCeEEEE
Q 047386 201 DP-Y---GSPSVFLDSAIQSVADGGMLMCT 226 (581)
Q Consensus 201 DP-y---Gs~~~fld~A~~~l~~gGlL~vT 226 (581)
-. + ..+..++....+ .+|.++++
T Consensus 82 ~~~l~~~~d~~~~l~e~~r---~~~~~ii~ 108 (194)
T TIGR02081 82 SQTLQATRNPEEILDEMLR---VGRHAIVS 108 (194)
T ss_pred hhHhHcCcCHHHHHHHHHH---hCCeEEEE
Confidence 64 2 223445555444 34555554
No 212
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=95.87 E-value=0.04 Score=59.35 Aligned_cols=104 Identities=21% Similarity=0.199 Sum_probs=71.0
Q ss_pred CCCeEEEecCcccHHHHHHhhhc-CCcc--EEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhh-------
Q 047386 121 KPPRVLEALSASGLRALRYAREV-EGIG--QVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLT------- 190 (581)
Q Consensus 121 ~~~~VLDafsgSG~rgIr~a~E~-~Ga~--~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~------- 190 (581)
++.+|||++||-|.-.+..+--+ .+.. .|+|||.++.-...++.-++.... .++.+.+.|+..+=..
T Consensus 155 p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~---~~~~v~~~~~~~~p~~~~~~~~~ 231 (375)
T KOG2198|consen 155 PGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPS---PNLLVTNHDASLFPNIYLKDGND 231 (375)
T ss_pred CCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCC---cceeeecccceeccccccccCch
Confidence 56799999999999986544321 1222 899999999988888777755443 3556666666443111
Q ss_pred -CCCcccEEeeCCCCCC--------h-------------------HhHHHHHHhccCCCeEEEEe
Q 047386 191 -HPKEFDVVDLDPYGSP--------S-------------------VFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 191 -~~~~fDvIdLDPyGs~--------~-------------------~fld~A~~~l~~gGlL~vTa 227 (581)
....||-|..|=+-|. . ..|..++++|+.||.|..+.
T Consensus 232 ~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYST 296 (375)
T KOG2198|consen 232 KEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYST 296 (375)
T ss_pred hhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEec
Confidence 1257999999965221 0 23456889999999988765
No 213
>COG3286 Uncharacterized protein conserved in archaea [Function unknown]
Probab=95.81 E-value=0.049 Score=53.71 Aligned_cols=75 Identities=20% Similarity=0.201 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHhhCC-CCCceeeHHHHhhhcCCCCCCHHHHHHHHHHCCceEEecccCCCccccCCCHHHHHHHHHHHHH
Q 047386 394 DRISAVLTTISEELP-DVPLFLSLHNLCSTLKCTSPSAVMFRSAVINAGYRVSGTHVNPLGLKTDAPMGVIWDIMRCWVK 472 (581)
Q Consensus 394 ~ri~~lL~~~~eEl~-~~P~yy~l~~l~~~lk~~~P~~~~~~~aL~~~GY~aSrTH~~p~~iKTdAP~~~i~di~r~w~~ 472 (581)
.+|..+...+..++. +--+-|++..+ ..+....-|.+.++.||.-+||+|-.-- .=|||||||+++.++.|...+
T Consensus 55 r~irel~~~vr~r~~~~~~~ly~l~~~-~~~a~p~Vp~~vl~daLk~~GyrVevr~---~~l~T~ap~~ev~E~vreLse 130 (204)
T COG3286 55 RAIRELHRRVRRRLYPDRQGLYTLYRI-FEEASPNVPPDVLIDALKLLGYRVEVRG---GELKTNAPWSEVVELVRELSE 130 (204)
T ss_pred HHHHHHHHHHHhhhccCccceEeeHhH-HHhhcCCCCHHHHHHHHHhCCceEEeeC---ceeecCCCHHHHHHHHHHHHH
Confidence 355566666665531 22234555544 3444443567999999999999986432 229999999999999998754
No 214
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=95.75 E-value=0.033 Score=58.01 Aligned_cols=105 Identities=18% Similarity=0.212 Sum_probs=82.8
Q ss_pred cCCCCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhh-CCCccc
Q 047386 118 RQLKPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLT-HPKEFD 196 (581)
Q Consensus 118 ~~~~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~-~~~~fD 196 (581)
+.+.|..||=+- ---+.||..+.- +-+++|..+|||...+..|.+-++..|+. +++++.-|.+.-+.+ ..++||
T Consensus 149 GDL~gK~I~vvG-DDDLtsia~aLt-~mpk~iaVvDIDERli~fi~k~aee~g~~---~ie~~~~Dlr~plpe~~~~kFD 223 (354)
T COG1568 149 GDLEGKEIFVVG-DDDLTSIALALT-GMPKRIAVVDIDERLIKFIEKVAEELGYN---NIEAFVFDLRNPLPEDLKRKFD 223 (354)
T ss_pred cCcCCCeEEEEc-CchhhHHHHHhc-CCCceEEEEechHHHHHHHHHHHHHhCcc---chhheeehhcccChHHHHhhCC
Confidence 566777777544 666889988874 34899999999999999999999999984 688888888766643 246899
Q ss_pred EEeeCCCCCC---hHhHHHHHHhccCC---CeEEEEe
Q 047386 197 VVDLDPYGSP---SVFLDSAIQSVADG---GMLMCTA 227 (581)
Q Consensus 197 vIdLDPyGs~---~~fld~A~~~l~~g---GlL~vTa 227 (581)
++.-||+-+- .-|+-..+..|+.- |+..+|-
T Consensus 224 vfiTDPpeTi~alk~FlgRGI~tLkg~~~aGyfgiT~ 260 (354)
T COG1568 224 VFITDPPETIKALKLFLGRGIATLKGEGCAGYFGITR 260 (354)
T ss_pred eeecCchhhHHHHHHHHhccHHHhcCCCccceEeeee
Confidence 9999996542 35888888888866 8888885
No 215
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=95.65 E-value=0.024 Score=60.25 Aligned_cols=72 Identities=21% Similarity=0.224 Sum_probs=57.1
Q ss_pred CCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCC-C-cccEEe
Q 047386 122 PPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHP-K-EFDVVD 199 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~-~-~fDvId 199 (581)
..+++|+|||.|++++-+.. .|.+-|.+||+++.|++..+.|... ..+++.|...+....- . .+|+|.
T Consensus 3 ~~~~idLFsG~GG~~lGf~~--agf~~~~a~Eid~~a~~ty~~n~~~--------~~~~~~di~~~~~~~~~~~~~Dvli 72 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEE--AGFEIVFANEIDPPAVATYKANFPH--------GDIILGDIKELDGEALRKSDVDVLI 72 (328)
T ss_pred CceEEeeccCCchHHHHHHh--cCCeEEEEEecCHHHHHHHHHhCCC--------CceeechHhhcChhhccccCCCEEE
Confidence 35899999999999966655 4889999999999999999998874 2467788877765421 2 689998
Q ss_pred eCCC
Q 047386 200 LDPY 203 (581)
Q Consensus 200 LDPy 203 (581)
-=|+
T Consensus 73 gGpP 76 (328)
T COG0270 73 GGPP 76 (328)
T ss_pred eCCC
Confidence 8875
No 216
>PF09840 DUF2067: Uncharacterized protein conserved in archaea (DUF2067); InterPro: IPR019202 This family of archaeal proteins, have no known function.
Probab=95.63 E-value=0.056 Score=53.56 Aligned_cols=75 Identities=16% Similarity=0.189 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHhhCC-CCCceeeHHHHhhhcCCCCCCHHHHHHHHHHCCceEEecccCCCccccCCCHHHHHHHHHHHHH
Q 047386 394 DRISAVLTTISEELP-DVPLFLSLHNLCSTLKCTSPSAVMFRSAVINAGYRVSGTHVNPLGLKTDAPMGVIWDIMRCWVK 472 (581)
Q Consensus 394 ~ri~~lL~~~~eEl~-~~P~yy~l~~l~~~lk~~~P~~~~~~~aL~~~GY~aSrTH~~p~~iKTdAP~~~i~di~r~w~~ 472 (581)
.+|+.+...+..-.. ...+=|.++.|.+..+ .+.|++.++.+|.-+||+|.. ...-|+||||++++.++++.--.
T Consensus 52 ~~Ik~~~~~vr~k~~~~g~~~y~l~~i~r~a~-~~vp~d~L~~~L~~~G~~ae~---~~~~i~T~a~~eev~~l~~~Lse 127 (190)
T PF09840_consen 52 RRIKELVRRVRSKYNKRGLYRYSLDDIFREAG-YPVPPDLLVDALKLLGYKAEY---REDVIKTDAPLEEVVELAERLSE 127 (190)
T ss_pred HHHHHHHHHHHHHhccCCceEEcHHHHHHHcC-CCCCHHHHHHHHHhCCCeeEE---eCCeEEecCCHHHHHHHHHHHHH
Confidence 355555555555321 2346799999999998 566789999999999999874 44599999999999999987643
No 217
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.57 E-value=0.019 Score=60.59 Aligned_cols=68 Identities=16% Similarity=0.177 Sum_probs=51.8
Q ss_pred EEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEeeCCC
Q 047386 125 VLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDLDPY 203 (581)
Q Consensus 125 VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdLDPy 203 (581)
|||+|||.|++++-+-. .|..-|.++|+++.|+++.+.|.. + .++++|...+-...-..+|+|.--|+
T Consensus 1 vidLF~G~GG~~~Gl~~--aG~~~~~a~e~~~~a~~ty~~N~~-------~--~~~~~Di~~~~~~~~~~~dvl~gg~P 68 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQ--AGFKCVFASEIDKYAQKTYEANFG-------N--KVPFGDITKISPSDIPDFDILLGGFP 68 (315)
T ss_pred CEEEecCccHHHHHHHH--cCCeEEEEEeCCHHHHHHHHHhCC-------C--CCCccChhhhhhhhCCCcCEEEecCC
Confidence 68999999999877765 488888999999999999999863 1 24567777664322235788888875
No 218
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=95.46 E-value=0.06 Score=53.43 Aligned_cols=143 Identities=17% Similarity=0.160 Sum_probs=85.6
Q ss_pred CCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhC-CCcccEEee
Q 047386 122 PPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTH-PKEFDVVDL 200 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~-~~~fDvIdL 200 (581)
+.+|||+-||.|.+--....+ +++ .++.+|+|++.+..+ ..+|+ .|+++|+..-|... ...||+|+|
T Consensus 14 gsrVLDLGCGdG~LL~~L~~~-k~v-~g~GvEid~~~v~~c----v~rGv------~Viq~Dld~gL~~f~d~sFD~VIl 81 (193)
T PF07021_consen 14 GSRVLDLGCGDGELLAYLKDE-KQV-DGYGVEIDPDNVAAC----VARGV------SVIQGDLDEGLADFPDQSFDYVIL 81 (193)
T ss_pred CCEEEecCCCchHHHHHHHHh-cCC-eEEEEecCHHHHHHH----HHcCC------CEEECCHHHhHhhCCCCCccEEeh
Confidence 679999999999987444443 555 589999999986544 34565 48999999988653 578999987
Q ss_pred CCC----CCChHhHHHHHHhccCCCeEEEEeccchh-------h-cCCCcch---hhhhccCccCCCccchhhhHHHHHH
Q 047386 201 DPY----GSPSVFLDSAIQSVADGGMLMCTATDMAV-------L-CGGNGEV---CYSKYGSYPLRGKYCHEMALRILLA 265 (581)
Q Consensus 201 DPy----Gs~~~fld~A~~~l~~gGlL~vTaTD~a~-------L-cg~~~~~---c~rkYG~~~~k~~~~hE~~lRill~ 265 (581)
-=- -.|...|+.. ++-|.-.+||-.-.+- + -|..|.+ =|.-|.+ +=-|=..++.|.
T Consensus 82 sqtLQ~~~~P~~vL~Em---lRVgr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdT-----PNih~~Ti~DFe- 152 (193)
T PF07021_consen 82 SQTLQAVRRPDEVLEEM---LRVGRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDT-----PNIHLCTIKDFE- 152 (193)
T ss_pred HhHHHhHhHHHHHHHHH---HHhcCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCC-----CCcccccHHHHH-
Confidence 531 1123344443 3445566666433321 2 3444433 2333332 333445666665
Q ss_pred HHHHHHHHcCCceEEEeecccCc
Q 047386 266 CIESHANRYKRYIEPVLSVQMDF 288 (581)
Q Consensus 266 ~i~~~Aa~~~r~i~Plls~s~dh 288 (581)
.-|...|..|.=-..+..++
T Consensus 153 ---~lc~~~~i~I~~~~~~~~~~ 172 (193)
T PF07021_consen 153 ---DLCRELGIRIEERVFLDGGR 172 (193)
T ss_pred ---HHHHHCCCEEEEEEEEcCCC
Confidence 44555566665544444444
No 219
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=95.43 E-value=0.057 Score=54.52 Aligned_cols=103 Identities=21% Similarity=0.224 Sum_probs=61.1
Q ss_pred CCeEEEecCcccHH----HHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCC------------------------
Q 047386 122 PPRVLEALSASGLR----ALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVA------------------------ 173 (581)
Q Consensus 122 ~~~VLDafsgSG~r----gIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~------------------------ 173 (581)
+.++-|.+||+|.+ |+-.-. -...|++-|+|++|++++++|+.+...+.
T Consensus 52 p~tLyDPCCG~gyLLTVlGLLh~~---~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl 128 (246)
T PF11599_consen 52 PYTLYDPCCGSGYLLTVLGLLHRR---RLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEAL 128 (246)
T ss_dssp -EEEEETT-TTSHHHHHHHHHTGG---GEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHH
T ss_pred CeeeeccCCCccHHHHHHHHhhhH---HHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHH
Confidence 45899999999954 333333 36789999999999999999998764320
Q ss_pred ---------------CCcEEEEehhHHHHHh----hCCCcccEEeeC-CCCCCh------------HhHHHHHHhccCCC
Q 047386 174 ---------------CSKVESHLADARVYML----THPKEFDVVDLD-PYGSPS------------VFLDSAIQSVADGG 221 (581)
Q Consensus 174 ---------------~~~v~v~~~DA~~~l~----~~~~~fDvIdLD-PyGs~~------------~fld~A~~~l~~gG 221 (581)
..-..+.+.|++.--. .+...-|+|+-| |||.-. .+|++-...|-.++
T Consensus 129 ~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~s 208 (246)
T PF11599_consen 129 ESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERS 208 (246)
T ss_dssp HHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-
T ss_pred HHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCc
Confidence 0123455555554211 122335999999 897521 46676667777888
Q ss_pred eEEEEe
Q 047386 222 MLMCTA 227 (581)
Q Consensus 222 lL~vTa 227 (581)
+++|+.
T Consensus 209 VV~v~~ 214 (246)
T PF11599_consen 209 VVAVSD 214 (246)
T ss_dssp EEEEEE
T ss_pred EEEEec
Confidence 998853
No 220
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=95.31 E-value=0.19 Score=56.76 Aligned_cols=109 Identities=15% Similarity=0.089 Sum_probs=85.0
Q ss_pred CCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCC-CcccEE-
Q 047386 121 KPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHP-KEFDVV- 198 (581)
Q Consensus 121 ~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~-~~fDvI- 198 (581)
.+..+||.-||.|-+-+.+|..-|. ..++++|+....+..+.+-+...++. ++.++++|+..++.... ..+|-|
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~-~~~iGiE~~~~~~~~~~~~~~~~~l~---N~~~~~~~~~~~~~~~~~~sv~~i~ 422 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPD-ALFIGVEVYLNGVANVLKLAGEQNIT---NFLLFPNNLDLILNDLPNNSLDGIY 422 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCC-CCEEEEEeeHHHHHHHHHHHHHcCCC---eEEEEcCCHHHHHHhcCcccccEEE
Confidence 3568999999999999999998665 46899999999999888888888874 78899999876664432 345665
Q ss_pred --eeCCCCC---------ChHhHHHHHHhccCCCeEEEEeccchhhc
Q 047386 199 --DLDPYGS---------PSVFLDSAIQSVADGGMLMCTATDMAVLC 234 (581)
Q Consensus 199 --dLDPyGs---------~~~fld~A~~~l~~gGlL~vTaTD~a~Lc 234 (581)
|-||.-. ...|++...+.|++||.|.+ +||...+.
T Consensus 423 i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~-~TD~~~y~ 468 (506)
T PRK01544 423 ILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVF-ASDIENYF 468 (506)
T ss_pred EECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEE-EcCCHHHH
Confidence 5689522 23799998999999999996 46655543
No 221
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=95.20 E-value=0.065 Score=53.55 Aligned_cols=139 Identities=14% Similarity=0.144 Sum_probs=91.0
Q ss_pred EEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEeeCCCC
Q 047386 125 VLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDLDPYG 204 (581)
Q Consensus 125 VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdLDPyG 204 (581)
|.|+.|=-|..++..+.. .-+.+|+|+|+++..++.+++|++.+++. +++++..+|-...+.. .+..|+|.+==-|
T Consensus 1 vaDIGtDHgyLpi~L~~~-~~~~~~ia~DI~~gpL~~A~~~i~~~~l~--~~i~~rlgdGL~~l~~-~e~~d~ivIAGMG 76 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKN-GKAPKAIAVDINPGPLEKAKENIAKYGLE--DRIEVRLGDGLEVLKP-GEDVDTIVIAGMG 76 (205)
T ss_dssp EEEET-STTHHHHHHHHT-TSEEEEEEEESSHHHHHHHHHHHHHTT-T--TTEEEEE-SGGGG--G-GG---EEEEEEE-
T ss_pred CceeccchhHHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHHHcCCc--ccEEEEECCcccccCC-CCCCCEEEEecCC
Confidence 679999999999999996 23788999999999999999999999997 7899999998887753 2336888876655
Q ss_pred C--ChHhHHHHHHhccCCCeEEEEeccchhhcCCCcchhhhhccCccCCCccchhhhHHHHHHHHHHHHHHcCCceEE-E
Q 047386 205 S--PSVFLDSAIQSVADGGMLMCTATDMAVLCGGNGEVCYSKYGSYPLRGKYCHEMALRILLACIESHANRYKRYIEP-V 281 (581)
Q Consensus 205 s--~~~fld~A~~~l~~gGlL~vTaTD~a~Lcg~~~~~c~rkYG~~~~k~~~~hE~~lRill~~i~~~Aa~~~r~i~P-l 281 (581)
. -..+|+.....+....-|.+ |... + ...+.+.....|..|.= -
T Consensus 77 G~lI~~ILe~~~~~~~~~~~lIL--------qP~~------------------~-------~~~LR~~L~~~gf~I~~E~ 123 (205)
T PF04816_consen 77 GELIIEILEAGPEKLSSAKRLIL--------QPNT------------------H-------AYELRRWLYENGFEIIDED 123 (205)
T ss_dssp HHHHHHHHHHTGGGGTT--EEEE--------EESS--------------------------HHHHHHHHHHTTEEEEEEE
T ss_pred HHHHHHHHHhhHHHhccCCeEEE--------eCCC------------------C-------hHHHHHHHHHCCCEEEEeE
Confidence 3 23556655544443333444 3222 2 23344566778888775 4
Q ss_pred eecccCceEEEEEEEEcCh
Q 047386 282 LSVQMDFYVRVFVRIYTSA 300 (581)
Q Consensus 282 ls~s~dhY~RvfVrV~~~~ 300 (581)
+-.-.++|+-|++-...+.
T Consensus 124 lv~e~~~~YeIi~~~~~~~ 142 (205)
T PF04816_consen 124 LVEENGRFYEIIVAERGEE 142 (205)
T ss_dssp EEEETTEEEEEEEEEESSS
T ss_pred EEeECCEEEEEEEEEeCCC
Confidence 6666677777766555444
No 222
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=95.10 E-value=0.051 Score=54.53 Aligned_cols=89 Identities=22% Similarity=0.247 Sum_probs=67.7
Q ss_pred CeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEeeCC
Q 047386 123 PRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDLDP 202 (581)
Q Consensus 123 ~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdLDP 202 (581)
.+|||+-+|+|.++++.++.-|++ +++..|+ |..++.+++ . ++|++.-+|.+ ...+. +|+|+|==
T Consensus 102 ~~vvDvGGG~G~~~~~l~~~~P~l-~~~v~Dl-p~v~~~~~~-------~--~rv~~~~gd~f---~~~P~-~D~~~l~~ 166 (241)
T PF00891_consen 102 KTVVDVGGGSGHFAIALARAYPNL-RATVFDL-PEVIEQAKE-------A--DRVEFVPGDFF---DPLPV-ADVYLLRH 166 (241)
T ss_dssp SEEEEET-TTSHHHHHHHHHSTTS-EEEEEE--HHHHCCHHH-------T--TTEEEEES-TT---TCCSS-ESEEEEES
T ss_pred cEEEeccCcchHHHHHHHHHCCCC-cceeecc-Hhhhhcccc-------c--cccccccccHH---hhhcc-ccceeeeh
Confidence 379999999999999999998987 5899999 888888888 2 68999999987 23345 99997622
Q ss_pred ----CC--CChHhHHHHHHhccCC--CeEEEE
Q 047386 203 ----YG--SPSVFLDSAIQSVADG--GMLMCT 226 (581)
Q Consensus 203 ----yG--s~~~fld~A~~~l~~g--GlL~vT 226 (581)
+. .....|..+.+++++| |-|+|-
T Consensus 167 vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~ 198 (241)
T PF00891_consen 167 VLHDWSDEDCVKILRNAAAALKPGKDGRLLII 198 (241)
T ss_dssp SGGGS-HHHHHHHHHHHHHHSEECTTEEEEEE
T ss_pred hhhhcchHHHHHHHHHHHHHhCCCCCCeEEEE
Confidence 22 1346788889999988 877775
No 223
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=95.04 E-value=0.049 Score=52.22 Aligned_cols=91 Identities=22% Similarity=0.135 Sum_probs=57.1
Q ss_pred CCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHH-----HHHhh----CC
Q 047386 122 PPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADAR-----VYMLT----HP 192 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~-----~~l~~----~~ 192 (581)
+.+|||+.|+.|+++-.++.......+|+++|+.+. ... ..+..+++|.. ..+.. ..
T Consensus 24 ~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~---~~~~~i~~d~~~~~~~~~i~~~~~~~~ 89 (181)
T PF01728_consen 24 GFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPL---QNVSFIQGDITNPENIKDIRKLLPESG 89 (181)
T ss_dssp TEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS----TTEEBTTGGGEEEEHSHHGGGSHGTTT
T ss_pred ccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccc---cceeeeecccchhhHHHhhhhhccccc
Confidence 468999999999999999885312789999999987 111 23455555542 12222 12
Q ss_pred CcccEEeeCC--CCCCh-------------HhHHHHHHhccCCCeEEEE
Q 047386 193 KEFDVVDLDP--YGSPS-------------VFLDSAIQSVADGGMLMCT 226 (581)
Q Consensus 193 ~~fDvIdLDP--yGs~~-------------~fld~A~~~l~~gGlL~vT 226 (581)
..||+|..|= .-+.. .-+..|++.|++||.+++.
T Consensus 90 ~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K 138 (181)
T PF01728_consen 90 EKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIK 138 (181)
T ss_dssp CSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEE
T ss_pred cCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEE
Confidence 6899999984 21111 2344567789999966664
No 224
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=94.99 E-value=0.011 Score=63.06 Aligned_cols=80 Identities=25% Similarity=0.296 Sum_probs=60.7
Q ss_pred CCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHH-------HHHHHHHHhCCCCCCcEEEEehhHHHH-HhhCC
Q 047386 121 KPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVE-------ACRRNIKFNGSVACSKVESHLADARVY-MLTHP 192 (581)
Q Consensus 121 ~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave-------~i~~Ni~~N~~~~~~~v~v~~~DA~~~-l~~~~ 192 (581)
.|..|+|.|.|||.+=+-+|.- |+ .|+.-|||-..+. .|+.|.+.-|... --+.+..+|...- ++. .
T Consensus 208 pGdivyDPFVGTGslLvsaa~F--Ga-~viGtDIDyr~vragrg~~~si~aNFkQYg~~~-~fldvl~~D~sn~~~rs-n 282 (421)
T KOG2671|consen 208 PGDIVYDPFVGTGSLLVSAAHF--GA-YVIGTDIDYRTVRAGRGEDESIKANFKQYGSSS-QFLDVLTADFSNPPLRS-N 282 (421)
T ss_pred CCCEEecCccccCceeeehhhh--cc-eeeccccchheeecccCCCcchhHhHHHhCCcc-hhhheeeecccCcchhh-c
Confidence 4678999999999998888874 54 7999999987776 6889999888652 2345666775432 332 5
Q ss_pred CcccEEeeCC-CCC
Q 047386 193 KEFDVVDLDP-YGS 205 (581)
Q Consensus 193 ~~fDvIdLDP-yGs 205 (581)
..||.|+.|| ||-
T Consensus 283 ~~fDaIvcDPPYGV 296 (421)
T KOG2671|consen 283 LKFDAIVCDPPYGV 296 (421)
T ss_pred ceeeEEEeCCCcch
Confidence 6899999998 763
No 225
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=94.96 E-value=0.034 Score=51.39 Aligned_cols=52 Identities=19% Similarity=0.268 Sum_probs=38.3
Q ss_pred cEEEEehhHHHHHhhCCCcccEEeeCCCCCC-------hHhHHHHHHhccCCCeEEEEe
Q 047386 176 KVESHLADARVYMLTHPKEFDVVDLDPYGSP-------SVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 176 ~v~v~~~DA~~~l~~~~~~fDvIdLDPyGs~-------~~fld~A~~~l~~gGlL~vTa 227 (581)
.+++..+||...+.+....||+|++|+|... .+++....+++++||.|...+
T Consensus 32 ~L~L~~gDa~~~l~~l~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~Tys 90 (124)
T PF05430_consen 32 TLTLWFGDAREMLPQLDARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLATYS 90 (124)
T ss_dssp EEEEEES-HHHHHHHB-T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEES-
T ss_pred EEEEEEcHHHHHHHhCcccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEEee
Confidence 4578899999999887779999999998642 378888888999999988765
No 226
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=94.61 E-value=0.16 Score=53.81 Aligned_cols=85 Identities=13% Similarity=0.139 Sum_probs=66.1
Q ss_pred CCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHh---hCC-CcccE
Q 047386 122 PPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYML---THP-KEFDV 197 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~---~~~-~~fDv 197 (581)
+..++|+-.|-|+=+...+..++. .+|++.|.|+.|++..++.++.. . +++++++++-..+.. ..+ ..+|.
T Consensus 21 ggiyVD~TlG~GGHS~~iL~~l~~-g~vigiD~D~~Al~~ak~~L~~~--~--~R~~~i~~nF~~l~~~l~~~~~~~vDg 95 (305)
T TIGR00006 21 DGIYIDCTLGFGGHSKAILEQLGT-GRLIGIDRDPQAIAFAKERLSDF--E--GRVVLIHDNFANFFEHLDELLVTKIDG 95 (305)
T ss_pred CCEEEEeCCCChHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHHhhc--C--CcEEEEeCCHHHHHHHHHhcCCCcccE
Confidence 458999999999999999987654 78999999999999999988743 2 578999988776543 222 46999
Q ss_pred EeeCCCCCChHhHHH
Q 047386 198 VDLDPYGSPSVFLDS 212 (581)
Q Consensus 198 IdLDPyGs~~~fld~ 212 (581)
|.+|= |-.+..+|.
T Consensus 96 Il~DL-GvSS~Qld~ 109 (305)
T TIGR00006 96 ILVDL-GVSSPQLDD 109 (305)
T ss_pred EEEec-cCCHhhcCC
Confidence 99997 433455553
No 227
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.51 E-value=0.13 Score=51.85 Aligned_cols=102 Identities=19% Similarity=0.231 Sum_probs=71.7
Q ss_pred CCCCeEEEecCcccHHHHHHhhhcCCccE--EEEEeCCHHHHHHHHHHHHHhC--------CCCCCcEEEEehhHHHHHh
Q 047386 120 LKPPRVLEALSASGLRALRYAREVEGIGQ--VVALDNDKASVEACRRNIKFNG--------SVACSKVESHLADARVYML 189 (581)
Q Consensus 120 ~~~~~VLDafsgSG~rgIr~a~E~~Ga~~--V~anD~s~~Ave~i~~Ni~~N~--------~~~~~~v~v~~~DA~~~l~ 189 (581)
.+|.++||+-||||.++--++.-+ |+.- ++.+|.-++.|++.++|+..-- ++ .....++.+|.+..-.
T Consensus 81 ~pG~s~LdvGsGSGYLt~~~~~mv-g~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~-~~~l~ivvGDgr~g~~ 158 (237)
T KOG1661|consen 81 QPGASFLDVGSGSGYLTACFARMV-GATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLK-RGELSIVVGDGRKGYA 158 (237)
T ss_pred ccCcceeecCCCccHHHHHHHHHh-cCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhc-cCceEEEeCCccccCC
Confidence 357899999999999998888655 3333 3999999999999999998543 11 2356677888766543
Q ss_pred hCCCcccEEeeCCCCCChHhHHHHHHhccCCCeEEEE
Q 047386 190 THPKEFDVVDLDPYGSPSVFLDSAIQSVADGGMLMCT 226 (581)
Q Consensus 190 ~~~~~fDvIdLDPyGs~~~fld~A~~~l~~gGlL~vT 226 (581)
+..+||.|.+--= .......-+.-|++||-|.|-
T Consensus 159 -e~a~YDaIhvGAa--a~~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 159 -EQAPYDAIHVGAA--ASELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred -ccCCcceEEEccC--ccccHHHHHHhhccCCeEEEe
Confidence 3568999998731 122333334457778777764
No 228
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=94.46 E-value=0.75 Score=49.68 Aligned_cols=142 Identities=20% Similarity=0.200 Sum_probs=90.7
Q ss_pred CCCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEe
Q 047386 120 LKPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVD 199 (581)
Q Consensus 120 ~~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvId 199 (581)
..+.++||+-|++|++.-.++. +|+ +|+++|..+-+ .++.. ..+|+.+.+|++.+... ...+|+|.
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~--rG~-~V~AVD~g~l~-----~~L~~-----~~~V~h~~~d~fr~~p~-~~~vDwvV 275 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVR--RGM-FVTAVDNGPMA-----QSLMD-----TGQVEHLRADGFKFRPP-RKNVDWLV 275 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHH--cCC-EEEEEechhcC-----HhhhC-----CCCEEEEeccCcccCCC-CCCCCEEE
Confidence 4677999999999999998888 587 89999976643 22221 24789999999988753 45799999
Q ss_pred eCCCCCChHhHHHHHHhccCC--CeEEEEeccchhhcCCCcchhhhhccCccCCCccchhhhHHHHHHHHHHHHHHcCCc
Q 047386 200 LDPYGSPSVFLDSAIQSVADG--GMLMCTATDMAVLCGGNGEVCYSKYGSYPLRGKYCHEMALRILLACIESHANRYKRY 277 (581)
Q Consensus 200 LDPyGs~~~fld~A~~~l~~g--GlL~vTaTD~a~Lcg~~~~~c~rkYG~~~~k~~~~hE~~lRill~~i~~~Aa~~~r~ 277 (581)
.|=--.|.....-..+.+..| .-.++| =. .|.+..| ..++..+..|.....++|..
T Consensus 276 cDmve~P~rva~lm~~Wl~~g~cr~aIfn--------LK-----------lpmk~r~---~~v~~~l~~i~~~l~~~g~~ 333 (357)
T PRK11760 276 CDMVEKPARVAELMAQWLVNGWCREAIFN--------LK-----------LPMKKRY---EEVRQCLELIEEQLDENGIN 333 (357)
T ss_pred EecccCHHHHHHHHHHHHhcCcccEEEEE--------EE-----------cCCCCCH---HHHHHHHHHHHHHHHHcCCc
Confidence 996444444444334445443 011111 01 1223322 45677777788888888774
Q ss_pred eEE-EeecccC-ceEEEEEEEE
Q 047386 278 IEP-VLSVQMD-FYVRVFVRIY 297 (581)
Q Consensus 278 i~P-lls~s~d-hY~RvfVrV~ 297 (581)
.+. +-.+++| +=+-|++++.
T Consensus 334 ~~~~~khLyHdReEiTv~~~~~ 355 (357)
T PRK11760 334 AQIQAKQLYHDREEVTVHLRRL 355 (357)
T ss_pred cceeeeeeecCCceEEEEEEec
Confidence 433 4445554 5666777654
No 229
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=94.43 E-value=0.13 Score=48.65 Aligned_cols=78 Identities=19% Similarity=0.256 Sum_probs=56.2
Q ss_pred EEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCC-cccEEeeCC---CCCC----------hHhHHHH
Q 047386 148 QVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPK-EFDVVDLDP---YGSP----------SVFLDSA 213 (581)
Q Consensus 148 ~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~-~fDvIdLDP---yGs~----------~~fld~A 213 (581)
+|++.||-++|++..++.++.+++. +++++++..=..+....+. ..|.|...= +|+. ..-|+.|
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~--~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLE--DRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAA 78 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-G--SGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCC--CcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHH
Confidence 5999999999999999999999986 5898887665444332233 788887652 2331 2567889
Q ss_pred HHhccCCCeEEEEe
Q 047386 214 IQSVADGGMLMCTA 227 (581)
Q Consensus 214 ~~~l~~gGlL~vTa 227 (581)
+.+|++||+|.|.+
T Consensus 79 l~lL~~gG~i~iv~ 92 (140)
T PF06962_consen 79 LELLKPGGIITIVV 92 (140)
T ss_dssp HHHEEEEEEEEEEE
T ss_pred HHhhccCCEEEEEE
Confidence 99999999999986
No 230
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=94.36 E-value=0.21 Score=52.84 Aligned_cols=136 Identities=18% Similarity=0.149 Sum_probs=68.7
Q ss_pred CCeEEEecCcc-cHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHh-CCCCCCcEEEEehhHH-HH---HhhCCCcc
Q 047386 122 PPRVLEALSAS-GLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFN-GSVACSKVESHLADAR-VY---MLTHPKEF 195 (581)
Q Consensus 122 ~~~VLDafsgS-G~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N-~~~~~~~v~v~~~DA~-~~---l~~~~~~f 195 (581)
..++||.-.|. .+..|-.+++ .| =+.++-|+|+.+++.+++|++.| +++ ++|++.+..-. .+ +....+.|
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~-~~-W~fvaTdID~~sl~~A~~nv~~N~~L~--~~I~l~~~~~~~~i~~~i~~~~e~~ 178 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKL-YG-WSFVATDIDPKSLESARENVERNPNLE--SRIELRKQKNPDNIFDGIIQPNERF 178 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHH-H---EEEEEES-HHHHHHHHHHHHHT-T-T--TTEEEEE--ST-SSTTTSTT--S-E
T ss_pred ceEeecCCccHHHHHHHHhhhh-cC-CeEEEecCCHHHHHHHHHHHHhccccc--cceEEEEcCCccccchhhhccccee
Confidence 45899986554 3556666665 34 36999999999999999999999 987 68888654321 12 22224689
Q ss_pred cEEeeCC--CCCChHhHHHHHHhc---cC-CCeEEEEeccchhhcCCCcchhhhhccCccCCCccchhhhHHHHHHHHHH
Q 047386 196 DVVDLDP--YGSPSVFLDSAIQSV---AD-GGMLMCTATDMAVLCGGNGEVCYSKYGSYPLRGKYCHEMALRILLACIES 269 (581)
Q Consensus 196 DvIdLDP--yGs~~~fld~A~~~l---~~-gGlL~vTaTD~a~Lcg~~~~~c~rkYG~~~~k~~~~hE~~lRill~~i~~ 269 (581)
|+....| |.|..+....+-+-. .. +. .-+....-|+.. ..+...|-|---|+..+..
T Consensus 179 dftmCNPPFy~s~~e~~~~~~~k~~nl~~~~~----~~~~p~~~~~G~-------------~~El~~~GGEv~FV~rMI~ 241 (299)
T PF05971_consen 179 DFTMCNPPFYSSQEEAEAGTERKWKNLGRPNK----KRSPPKLNFTGQ-------------SNELWCEGGEVAFVKRMIK 241 (299)
T ss_dssp EEEEE-----SS-------------------------------------------------TTTTHHHHTHHHHHHHHHH
T ss_pred eEEecCCccccChhhhcccccccccccccccc----cccCccccCCCC-------------cceEEcCCccHHHHHHHHH
Confidence 9999998 344333332222111 10 00 000001112211 2345566777778888888
Q ss_pred HHHHcCCce
Q 047386 270 HANRYKRYI 278 (581)
Q Consensus 270 ~Aa~~~r~i 278 (581)
.-..++..+
T Consensus 242 ES~~~~~~v 250 (299)
T PF05971_consen 242 ESLQLKDQV 250 (299)
T ss_dssp HHHHHGGGE
T ss_pred HHHHhCCCc
Confidence 888877654
No 231
>PRK11524 putative methyltransferase; Provisional
Probab=94.24 E-value=0.086 Score=54.79 Aligned_cols=53 Identities=15% Similarity=0.191 Sum_probs=40.9
Q ss_pred CcEEEEehhHHHHHhhC-CCcccEEeeCC-CCCC-------------------hHhHHHHHHhccCCCeEEEEe
Q 047386 175 SKVESHLADARVYMLTH-PKEFDVVDLDP-YGSP-------------------SVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 175 ~~v~v~~~DA~~~l~~~-~~~fDvIdLDP-yGs~-------------------~~fld~A~~~l~~gGlL~vTa 227 (581)
+...++++|+..+|... ...||+|++|| |+.. ..++..+.+.|++||.|++.+
T Consensus 7 ~~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~ 80 (284)
T PRK11524 7 EAKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMN 80 (284)
T ss_pred CCCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 34578999999998654 46899999997 6431 145667789999999999863
No 232
>PRK10458 DNA cytosine methylase; Provisional
Probab=93.95 E-value=0.12 Score=57.65 Aligned_cols=43 Identities=16% Similarity=0.147 Sum_probs=37.4
Q ss_pred CCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHH
Q 047386 122 PPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNI 166 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni 166 (581)
..+++|+|||.|++++-+-. .|...|.++|+++.|+++.+.|.
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~--aG~~~v~a~Eid~~A~~TY~~N~ 130 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEA--IGGQCVFTSEWNKHAVRTYKANW 130 (467)
T ss_pred CceEEEeCcCccHHHHHHHH--cCCEEEEEEechHHHHHHHHHHc
Confidence 46899999999988777644 48888999999999999999985
No 233
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=93.94 E-value=0.18 Score=47.87 Aligned_cols=76 Identities=16% Similarity=0.170 Sum_probs=54.8
Q ss_pred EEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEeeCCCCC-----ChHhHHHHHHhccCCCeEE
Q 047386 150 VALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDLDPYGS-----PSVFLDSAIQSVADGGMLM 224 (581)
Q Consensus 150 ~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdLDPyGs-----~~~fld~A~~~l~~gGlL~ 224 (581)
+++|+|+..++.++++....+.....+++++++|+..+-. ....||+|.+- |+. +..++....+.|++||.|+
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~-~~~~fD~v~~~-~~l~~~~d~~~~l~ei~rvLkpGG~l~ 78 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPF-DDCEFDAVTMG-YGLRNVVDRLRAMKEMYRVLKPGSRVS 78 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCC-CCCCeeEEEec-chhhcCCCHHHHHHHHHHHcCcCeEEE
Confidence 3689999999999877654321111368999999987632 34579999774 322 3467778889999999998
Q ss_pred EEe
Q 047386 225 CTA 227 (581)
Q Consensus 225 vTa 227 (581)
+.-
T Consensus 79 i~d 81 (160)
T PLN02232 79 ILD 81 (160)
T ss_pred EEE
Confidence 863
No 234
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=93.92 E-value=0.1 Score=50.58 Aligned_cols=41 Identities=20% Similarity=0.327 Sum_probs=33.4
Q ss_pred CCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHH
Q 047386 121 KPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRR 164 (581)
Q Consensus 121 ~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~ 164 (581)
++..|||.|+|||.-++.+... | .+.+++|+++..++++++
T Consensus 191 ~gdiVlDpF~GSGTT~~aa~~l--~-R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 191 PGDIVLDPFAGSGTTAVAAEEL--G-RRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp TT-EEEETT-TTTHHHHHHHHT--T--EEEEEESSHHHHHHHHH
T ss_pred cceeeehhhhccChHHHHHHHc--C-CeEEEEeCCHHHHHHhcC
Confidence 3668999999999999998874 3 578999999999999875
No 235
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=93.91 E-value=0.26 Score=51.60 Aligned_cols=100 Identities=27% Similarity=0.308 Sum_probs=60.6
Q ss_pred CeEEEecCccc---HHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHH-HhCCCCCCcEEEEehhHHHHHhhCCCcccEE
Q 047386 123 PRVLEALSASG---LRALRYAREVEGIGQVVALDNDKASVEACRRNIK-FNGSVACSKVESHLADARVYMLTHPKEFDVV 198 (581)
Q Consensus 123 ~~VLDafsgSG---~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~-~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvI 198 (581)
.+|+ |=||| +=+|..+++...-..|+.+|+|+.|++..++=+. ..++. .+++++.+|+....... ..||+|
T Consensus 122 ~rVa--FIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~--~~m~f~~~d~~~~~~dl-~~~DvV 196 (276)
T PF03059_consen 122 SRVA--FIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLS--KRMSFITADVLDVTYDL-KEYDVV 196 (276)
T ss_dssp -EEE--EE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH---SSEEEEES-GGGG-GG-----SEE
T ss_pred ceEE--EEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhccccc--CCeEEEecchhcccccc-ccCCEE
Confidence 4675 44555 3455666542112468999999999999998877 56665 68999999997765432 479999
Q ss_pred eeCCC-CC---C-hHhHHHHHHhccCCCeEEEEe
Q 047386 199 DLDPY-GS---P-SVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 199 dLDPy-Gs---~-~~fld~A~~~l~~gGlL~vTa 227 (581)
++--. |. + ...++...+.+++|.+|.+-+
T Consensus 197 ~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 197 FLAALVGMDAEPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp EE-TT-S----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred EEhhhcccccchHHHHHHHHHhhCCCCcEEEEec
Confidence 99874 31 2 356777778899999998865
No 236
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=93.46 E-value=0.37 Score=55.81 Aligned_cols=111 Identities=14% Similarity=0.098 Sum_probs=75.8
Q ss_pred CCeEEEecCcccHHHHHHhhhc-------C----CccEEEEEeCCHHHHHHHHHHHHH-------------------hCC
Q 047386 122 PPRVLEALSASGLRALRYAREV-------E----GIGQVVALDNDKASVEACRRNIKF-------------------NGS 171 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~-------~----Ga~~V~anD~s~~Ave~i~~Ni~~-------------------N~~ 171 (581)
..+|||..=|+|+.-+..+... + .--+++++|..|-+.+.+.+-... .|+
T Consensus 58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~ 137 (662)
T PRK01747 58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC 137 (662)
T ss_pred cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence 3689999999999888777443 1 123788999877555444443321 122
Q ss_pred C----CCC--cEEEEehhHHHHHhhCCCcccEEeeCCCCC---C----hHhHHHHHHhccCCCeEEEEeccchh
Q 047386 172 V----ACS--KVESHLADARVYMLTHPKEFDVVDLDPYGS---P----SVFLDSAIQSVADGGMLMCTATDMAV 232 (581)
Q Consensus 172 ~----~~~--~v~v~~~DA~~~l~~~~~~fDvIdLDPyGs---~----~~fld~A~~~l~~gGlL~vTaTD~a~ 232 (581)
. ..+ ..+++.+||...+.....+||+|++|+|.. | ..++..-.+++++||.|...+....|
T Consensus 138 ~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~t~a~~v 211 (662)
T PRK01747 138 HRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATFTSAGFV 211 (662)
T ss_pred eEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEeehHHHH
Confidence 0 011 345788999999886656799999999864 1 36777777889999999877644444
No 237
>PRK04148 hypothetical protein; Provisional
Probab=93.24 E-value=0.13 Score=48.39 Aligned_cols=89 Identities=15% Similarity=0.109 Sum_probs=57.0
Q ss_pred CCeEEEecCcccH-HHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEe-
Q 047386 122 PPRVLEALSASGL-RALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVD- 199 (581)
Q Consensus 122 ~~~VLDafsgSG~-rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvId- 199 (581)
+.+|||+-+|+|. .+...+. .| ..|+++|+|+.|++.++++ ++ .+..+|.+.-=...-+.+|+|.
T Consensus 17 ~~kileIG~GfG~~vA~~L~~--~G-~~ViaIDi~~~aV~~a~~~----~~------~~v~dDlf~p~~~~y~~a~liys 83 (134)
T PRK04148 17 NKKIVELGIGFYFKVAKKLKE--SG-FDVIVIDINEKAVEKAKKL----GL------NAFVDDLFNPNLEIYKNAKLIYS 83 (134)
T ss_pred CCEEEEEEecCCHHHHHHHHH--CC-CEEEEEECCHHHHHHHHHh----CC------eEEECcCCCCCHHHHhcCCEEEE
Confidence 4689999999996 8887775 36 4799999999998877665 33 4677777643111114689985
Q ss_pred eCCCCCChHhHHHHHHhcc-CCCeEEEE
Q 047386 200 LDPYGSPSVFLDSAIQSVA-DGGMLMCT 226 (581)
Q Consensus 200 LDPyGs~~~fld~A~~~l~-~gGlL~vT 226 (581)
+=|+ .+.....+++.+ -|.=|+++
T Consensus 84 irpp---~el~~~~~~la~~~~~~~~i~ 108 (134)
T PRK04148 84 IRPP---RDLQPFILELAKKINVPLIIK 108 (134)
T ss_pred eCCC---HHHHHHHHHHHHHcCCCEEEE
Confidence 3443 233333333322 34445565
No 238
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=92.94 E-value=0.57 Score=49.54 Aligned_cols=104 Identities=16% Similarity=0.318 Sum_probs=81.0
Q ss_pred CCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHH--hCCCCCCcEEEEehhHHHHHhhC-CCcccEE
Q 047386 122 PPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKF--NGSVACSKVESHLADARVYMLTH-PKEFDVV 198 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~--N~~~~~~~v~v~~~DA~~~l~~~-~~~fDvI 198 (581)
+.+||=.+.|-|..-=+-++. +-+..|+.+|++...+++-++=... .+.+. .+|.++-||.+.||... ...||||
T Consensus 122 pkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~-~~v~l~iGDG~~fl~~~~~~~~dVi 199 (337)
T KOG1562|consen 122 PKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEG-KKVKLLIGDGFLFLEDLKENPFDVI 199 (337)
T ss_pred CCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCC-CceEEEeccHHHHHHHhccCCceEE
Confidence 558999999999876666665 5688899999999999987765543 35553 58899999999999876 5789999
Q ss_pred eeC---CCCCCh-----HhHHHHHHhccCCCeEEEEe
Q 047386 199 DLD---PYGSPS-----VFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 199 dLD---PyGs~~-----~fld~A~~~l~~gGlL~vTa 227 (581)
++| |-|.+- +|......+|+.||++|+-+
T Consensus 200 i~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 200 ITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred EEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 887 444322 45566778999999999875
No 239
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=92.61 E-value=0.37 Score=51.50 Aligned_cols=110 Identities=21% Similarity=0.290 Sum_probs=77.1
Q ss_pred CCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHh-CCCC--CCcEEEEehhHHHHHhh--C---CC
Q 047386 122 PPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFN-GSVA--CSKVESHLADARVYMLT--H---PK 193 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N-~~~~--~~~v~v~~~DA~~~l~~--~---~~ 193 (581)
+..+||+-||-|+=-|.|-+ .|+...+.+||..-+++.+++-.+.- +... .=.+.++.+|++.-... . ..
T Consensus 118 ~~~~~~LgCGKGGDLlKw~k--AgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp 195 (389)
T KOG1975|consen 118 GDDVLDLGCGKGGDLLKWDK--AGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDP 195 (389)
T ss_pred ccccceeccCCcccHhHhhh--hcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCC
Confidence 44699999999999999998 59999999999999999887644411 1100 01367899998754321 1 23
Q ss_pred cccEEeeCC---CCC-----ChHhHHHHHHhccCCCeEEEEeccchhh
Q 047386 194 EFDVVDLDP---YGS-----PSVFLDSAIQSVADGGMLMCTATDMAVL 233 (581)
Q Consensus 194 ~fDvIdLDP---yGs-----~~~fld~A~~~l~~gGlL~vTaTD~a~L 233 (581)
+||+|-.-= |.. +.-+|.-+..+|++||+.+-|-.|.-++
T Consensus 196 ~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd~I 243 (389)
T KOG1975|consen 196 RFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSDVI 243 (389)
T ss_pred CcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHHHH
Confidence 499995431 322 2356677888999999999886554443
No 240
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=92.27 E-value=0.86 Score=47.38 Aligned_cols=142 Identities=22% Similarity=0.265 Sum_probs=91.6
Q ss_pred CCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEE--
Q 047386 121 KPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVV-- 198 (581)
Q Consensus 121 ~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvI-- 198 (581)
...++||+-||.|....+.+. -.++|++-|+|+.. +..++.-|. +++-.| .+- ....+||+|
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~---~f~~v~aTE~S~~M----r~rL~~kg~------~vl~~~--~w~-~~~~~fDvIsc 157 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAP---LFKEVYATEASPPM----RWRLSKKGF------TVLDID--DWQ-QTDFKFDVISC 157 (265)
T ss_pred cCCceEEecCCCcHHHHHHHh---hcceEEeecCCHHH----HHHHHhCCC------eEEehh--hhh-ccCCceEEEee
Confidence 456899999999999999987 46789999999766 444454454 333222 232 234689999
Q ss_pred --eeCCCCCChHhHHHHHHhccCCCeEEEEeccchhhcCCCcchhhhhccC---------ccCCCccchhhhHHHHHHHH
Q 047386 199 --DLDPYGSPSVFLDSAIQSVADGGMLMCTATDMAVLCGGNGEVCYSKYGS---------YPLRGKYCHEMALRILLACI 267 (581)
Q Consensus 199 --dLDPyGs~~~fld~A~~~l~~gGlL~vTaTD~a~Lcg~~~~~c~rkYG~---------~~~k~~~~hE~~lRill~~i 267 (581)
.||==..|..+|...-++|+++|.|.+.- | .|-..|--+|+ .++.+ -+-|-.+..|+
T Consensus 158 LNvLDRc~~P~~LL~~i~~~l~p~G~lilAv----V----lP~~pyVE~~~g~~~~P~e~l~~~g-~~~E~~v~~l~--- 225 (265)
T PF05219_consen 158 LNVLDRCDRPLTLLRDIRRALKPNGRLILAV----V----LPFRPYVEFGGGKSNRPSELLPVKG-ATFEEQVSSLV--- 225 (265)
T ss_pred hhhhhccCCHHHHHHHHHHHhCCCCEEEEEE----E----ecccccEEcCCCCCCCchhhcCCCC-CcHHHHHHHHH---
Confidence 57876667788998889999999998863 2 23333333444 22233 23444444444
Q ss_pred HHHHHHcCCceE-----EEee---cccCceEE
Q 047386 268 ESHANRYKRYIE-----PVLS---VQMDFYVR 291 (581)
Q Consensus 268 ~~~Aa~~~r~i~-----Plls---~s~dhY~R 291 (581)
....-.|..++ |.|| +..+||+-
T Consensus 226 -~v~~p~GF~v~~~tr~PYLcEGD~~~~~Y~L 256 (265)
T PF05219_consen 226 -NVFEPAGFEVERWTRLPYLCEGDLYQSYYVL 256 (265)
T ss_pred -HHHHhcCCEEEEEeccCccccCcccCceEEe
Confidence 44556777777 5444 34456654
No 241
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=92.15 E-value=0.44 Score=48.83 Aligned_cols=139 Identities=20% Similarity=0.204 Sum_probs=86.1
Q ss_pred CCCCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEE-EehhHHHHHhh-CCCccc
Q 047386 119 QLKPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVES-HLADARVYMLT-HPKEFD 196 (581)
Q Consensus 119 ~~~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v-~~~DA~~~l~~-~~~~fD 196 (581)
.+++.+|||+-|-||+|.--++. +||++|+|+|..-.-+.. -++ + + .++.+ -..|++.+-.. ..+..|
T Consensus 77 ~~k~kv~LDiGsSTGGFTd~lLq--~gAk~VyavDVG~~Ql~~---kLR-~--d--~rV~~~E~tN~r~l~~~~~~~~~d 146 (245)
T COG1189 77 DVKGKVVLDIGSSTGGFTDVLLQ--RGAKHVYAVDVGYGQLHW---KLR-N--D--PRVIVLERTNVRYLTPEDFTEKPD 146 (245)
T ss_pred CCCCCEEEEecCCCccHHHHHHH--cCCcEEEEEEccCCccCH---hHh-c--C--CcEEEEecCChhhCCHHHcccCCC
Confidence 45788999999999999998887 699999999987532211 111 1 1 23443 34555544322 124679
Q ss_pred EEeeCC-CCCChHhHHHHHHhccCCCeEEEEeccchhhcCCCcchhhhhcc--CccCCCccchhhhHHHHHHHHHHHHHH
Q 047386 197 VVDLDP-YGSPSVFLDSAIQSVADGGMLMCTATDMAVLCGGNGEVCYSKYG--SYPLRGKYCHEMALRILLACIESHANR 273 (581)
Q Consensus 197 vIdLDP-yGs~~~fld~A~~~l~~gGlL~vTaTD~a~Lcg~~~~~c~rkYG--~~~~k~~~~hE~~lRill~~i~~~Aa~ 273 (581)
+|.+|= |-|-.-.|.....++++++.+..-- -..-|++...-| ++ ++.+..| ..++..|.+.|..
T Consensus 147 ~~v~DvSFISL~~iLp~l~~l~~~~~~~v~Lv-------KPQFEagr~~v~kkGv-v~d~~~~----~~v~~~i~~~~~~ 214 (245)
T COG1189 147 LIVIDVSFISLKLILPALLLLLKDGGDLVLLV-------KPQFEAGREQVGKKGV-VRDPKLH----AEVLSKIENFAKE 214 (245)
T ss_pred eEEEEeehhhHHHHHHHHHHhcCCCceEEEEe-------cchhhhhhhhcCcCce-ecCcchH----HHHHHHHHHHHhh
Confidence 999996 8776666777777888887765531 112223332222 22 3334333 3456777788888
Q ss_pred cCCceE
Q 047386 274 YKRYIE 279 (581)
Q Consensus 274 ~~r~i~ 279 (581)
+|..+.
T Consensus 215 ~g~~~~ 220 (245)
T COG1189 215 LGFQVK 220 (245)
T ss_pred cCcEEe
Confidence 876654
No 242
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=92.10 E-value=0.83 Score=46.53 Aligned_cols=101 Identities=22% Similarity=0.121 Sum_probs=69.6
Q ss_pred CCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhC--CCcccEE
Q 047386 121 KPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTH--PKEFDVV 198 (581)
Q Consensus 121 ~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~--~~~fDvI 198 (581)
.|.+||-+-|+||.---+.+-=+.--..|+|++.++...+-+-.=++ -. .+|.++.+||+.--... -+..|+|
T Consensus 73 ~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~-~R----~NIiPIl~DAr~P~~Y~~lv~~VDvI 147 (229)
T PF01269_consen 73 PGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAK-KR----PNIIPILEDARHPEKYRMLVEMVDVI 147 (229)
T ss_dssp TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHH-HS----TTEEEEES-TTSGGGGTTTS--EEEE
T ss_pred CCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhc-cC----CceeeeeccCCChHHhhcccccccEE
Confidence 36799999999999877776533224579999999999877763333 22 47889999998543221 2578999
Q ss_pred eeCC--CCCChHhHHHHHHhccCCCeEEEE
Q 047386 199 DLDP--YGSPSVFLDSAIQSVADGGMLMCT 226 (581)
Q Consensus 199 dLDP--yGs~~~fld~A~~~l~~gGlL~vT 226 (581)
+.|= +.-..-++.-|-..|++||.+++.
T Consensus 148 ~~DVaQp~Qa~I~~~Na~~fLk~gG~~~i~ 177 (229)
T PF01269_consen 148 FQDVAQPDQARIAALNARHFLKPGGHLIIS 177 (229)
T ss_dssp EEE-SSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EecCCChHHHHHHHHHHHhhccCCcEEEEE
Confidence 9995 343445677777789999987765
No 243
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=91.90 E-value=1 Score=46.77 Aligned_cols=86 Identities=17% Similarity=0.143 Sum_probs=66.3
Q ss_pred CCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEeeC
Q 047386 122 PPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDLD 201 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdLD 201 (581)
+..|||.-.|.|.+-...+.. +.+|+|+++|+.-++.+++-.. . .++++++++||..+=...-..++.|+-.
T Consensus 31 ~d~VlEIGpG~GaLT~~Ll~~---~~~v~aiEiD~~l~~~L~~~~~--~---~~n~~vi~~DaLk~d~~~l~~~~~vVaN 102 (259)
T COG0030 31 GDNVLEIGPGLGALTEPLLER---AARVTAIEIDRRLAEVLKERFA--P---YDNLTVINGDALKFDFPSLAQPYKVVAN 102 (259)
T ss_pred CCeEEEECCCCCHHHHHHHhh---cCeEEEEEeCHHHHHHHHHhcc--c---ccceEEEeCchhcCcchhhcCCCEEEEc
Confidence 458999999999999999984 4679999999999999998876 1 2578999999976532100156777777
Q ss_pred -CCCCChHhHHHHHH
Q 047386 202 -PYGSPSVFLDSAIQ 215 (581)
Q Consensus 202 -PyGs~~~fld~A~~ 215 (581)
||.=.+|++-..+.
T Consensus 103 lPY~Isspii~kll~ 117 (259)
T COG0030 103 LPYNISSPILFKLLE 117 (259)
T ss_pred CCCcccHHHHHHHHh
Confidence 78767788765443
No 244
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=91.68 E-value=0.72 Score=51.92 Aligned_cols=78 Identities=14% Similarity=0.141 Sum_probs=59.9
Q ss_pred eEEEecCcccHHHHHHhhhcCC---ccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhh----CCCccc
Q 047386 124 RVLEALSASGLRALRYAREVEG---IGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLT----HPKEFD 196 (581)
Q Consensus 124 ~VLDafsgSG~rgIr~a~E~~G---a~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~----~~~~fD 196 (581)
+|+|.-||||++=+.++..+.. -...+..|+++....+++.|+-++|+. ..+...++|...--.. ...+||
T Consensus 189 ~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~--~~~~i~~~dtl~~~~~~~~~~~~~~D 266 (489)
T COG0286 189 SIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIE--GDANIRHGDTLSNPKHDDKDDKGKFD 266 (489)
T ss_pred eecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCC--ccccccccccccCCcccccCCcccee
Confidence 8999999999998888876531 145899999999999999999999986 2445666665432211 236799
Q ss_pred EEeeCCC
Q 047386 197 VVDLDPY 203 (581)
Q Consensus 197 vIdLDPy 203 (581)
+|+.-||
T Consensus 267 ~viaNPP 273 (489)
T COG0286 267 FVIANPP 273 (489)
T ss_pred EEEeCCC
Confidence 9999984
No 245
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=91.62 E-value=0.17 Score=50.93 Aligned_cols=39 Identities=13% Similarity=0.120 Sum_probs=29.3
Q ss_pred CCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHH
Q 047386 122 PPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACR 163 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~ 163 (581)
..+++|+|||+|+.++.+.. ....|++||+++..+.+.+
T Consensus 21 ~~~~vepF~G~g~V~~~~~~---~~~~vi~ND~~~~l~~~~~ 59 (260)
T PF02086_consen 21 HKTYVEPFAGGGSVFLNLKQ---PGKRVIINDINPDLINFWK 59 (260)
T ss_dssp -SEEEETT-TTSHHHHCC------SSEEEEEES-HHHHHHHH
T ss_pred CCEEEEEecchhHHHHHhcc---cccceeeeechHHHHHHHH
Confidence 55899999999999999876 2578999999999887655
No 246
>PRK13699 putative methylase; Provisional
Probab=91.60 E-value=0.4 Score=48.52 Aligned_cols=50 Identities=12% Similarity=0.111 Sum_probs=37.9
Q ss_pred EEEehhHHHHHhhC-CCcccEEeeCC-CCC------C------------hHhHHHHHHhccCCCeEEEEe
Q 047386 178 ESHLADARVYMLTH-PKEFDVVDLDP-YGS------P------------SVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 178 ~v~~~DA~~~l~~~-~~~fDvIdLDP-yGs------~------------~~fld~A~~~l~~gGlL~vTa 227 (581)
+++++|+..+|... .+.+|+|+.|| |+. . ..++..+.+.|++||++++.+
T Consensus 3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~ 72 (227)
T PRK13699 3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFY 72 (227)
T ss_pred eEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 67899999999875 47899999998 642 0 134455678899999998753
No 247
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=91.27 E-value=0.5 Score=48.50 Aligned_cols=86 Identities=20% Similarity=0.188 Sum_probs=63.9
Q ss_pred CCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhC--CCcccEEe
Q 047386 122 PPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTH--PKEFDVVD 199 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~--~~~fDvId 199 (581)
+..|||+.+|+|.+.-..+.. + ++|+++|+|+..++.+++.... ..+++++++|+..+-... ......|+
T Consensus 31 ~~~VlEiGpG~G~lT~~L~~~--~-~~v~~vE~d~~~~~~L~~~~~~-----~~~~~vi~~D~l~~~~~~~~~~~~~~vv 102 (262)
T PF00398_consen 31 GDTVLEIGPGPGALTRELLKR--G-KRVIAVEIDPDLAKHLKERFAS-----NPNVEVINGDFLKWDLYDLLKNQPLLVV 102 (262)
T ss_dssp TSEEEEESSTTSCCHHHHHHH--S-SEEEEEESSHHHHHHHHHHCTT-----CSSEEEEES-TTTSCGGGHCSSSEEEEE
T ss_pred CCEEEEeCCCCccchhhHhcc--c-CcceeecCcHhHHHHHHHHhhh-----cccceeeecchhccccHHhhcCCceEEE
Confidence 568999999999999999885 4 8999999999999999987761 157999999998653321 11223444
Q ss_pred eC-CCCCChHhHHHHHH
Q 047386 200 LD-PYGSPSVFLDSAIQ 215 (581)
Q Consensus 200 LD-PyGs~~~fld~A~~ 215 (581)
-- ||.-.++++...+.
T Consensus 103 ~NlPy~is~~il~~ll~ 119 (262)
T PF00398_consen 103 GNLPYNISSPILRKLLE 119 (262)
T ss_dssp EEETGTGHHHHHHHHHH
T ss_pred EEecccchHHHHHHHhh
Confidence 33 78666678777666
No 248
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=91.05 E-value=1.1 Score=47.19 Aligned_cols=97 Identities=19% Similarity=0.289 Sum_probs=62.0
Q ss_pred CCCeEEE-ecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEe
Q 047386 121 KPPRVLE-ALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVD 199 (581)
Q Consensus 121 ~~~~VLD-afsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvId 199 (581)
.+.+||= ..++.|..++.+|+. .|+..|++.|.+++..+++++ .|.+ .-+.....|...++.. ...||+|
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~-~G~~~Vi~~~~~~~~~~~a~~----lGa~--~vi~~~~~~~~~~~~~-~g~~D~v- 239 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKT-LGAAEIVCADVSPRSLSLARE----MGAD--KLVNPQNDDLDHYKAE-KGYFDVS- 239 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH-cCCcEEEEEeCCHHHHHHHHH----cCCc--EEecCCcccHHHHhcc-CCCCCEE-
Confidence 3455553 345556666777776 588889999999998887754 3542 1111112233333332 2358977
Q ss_pred eCCCCCChHhHHHHHHhccCCCeEEEEe
Q 047386 200 LDPYGSPSVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 200 LDPyGs~~~fld~A~~~l~~gGlL~vTa 227 (581)
+|.-|.+ ..++.+++++++||.+.+..
T Consensus 240 id~~G~~-~~~~~~~~~l~~~G~iv~~G 266 (343)
T PRK09880 240 FEVSGHP-SSINTCLEVTRAKGVMVQVG 266 (343)
T ss_pred EECCCCH-HHHHHHHHHhhcCCEEEEEc
Confidence 5887764 46778899999999987753
No 249
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=90.77 E-value=1.5 Score=42.98 Aligned_cols=97 Identities=21% Similarity=0.150 Sum_probs=73.5
Q ss_pred CCCeEEEecCcccHHHHHHhhhcCCc--cEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHH---hhC-CCc
Q 047386 121 KPPRVLEALSASGLRALRYAREVEGI--GQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYM---LTH-PKE 194 (581)
Q Consensus 121 ~~~~VLDafsgSG~rgIr~a~E~~Ga--~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l---~~~-~~~ 194 (581)
.+.-||++-.|||++-=+.++. |+ ..+++++.|++-+..+.+-. ..+.+++|||+.+- ..+ ...
T Consensus 48 sglpVlElGPGTGV~TkaIL~~--gv~~~~L~~iE~~~dF~~~L~~~~--------p~~~ii~gda~~l~~~l~e~~gq~ 117 (194)
T COG3963 48 SGLPVLELGPGTGVITKAILSR--GVRPESLTAIEYSPDFVCHLNQLY--------PGVNIINGDAFDLRTTLGEHKGQF 117 (194)
T ss_pred cCCeeEEEcCCccHhHHHHHhc--CCCccceEEEEeCHHHHHHHHHhC--------CCccccccchhhHHHHHhhcCCCe
Confidence 4668999999999999998884 64 57999999999987764422 23568999998764 333 467
Q ss_pred ccEEeeC-CCCC-----ChHhHHHHHHhccCCCeEEEEe
Q 047386 195 FDVVDLD-PYGS-----PSVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 195 fDvIdLD-PyGs-----~~~fld~A~~~l~~gGlL~vTa 227 (581)
||.|+-- |.-+ ....|+.+++.|..||-|+.-.
T Consensus 118 ~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqft 156 (194)
T COG3963 118 FDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFT 156 (194)
T ss_pred eeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEE
Confidence 9999865 5433 2368899999999999887654
No 250
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=90.69 E-value=0.47 Score=52.45 Aligned_cols=56 Identities=25% Similarity=0.264 Sum_probs=51.6
Q ss_pred CeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEeh
Q 047386 123 PRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLA 182 (581)
Q Consensus 123 ~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~ 182 (581)
..|||.-.|||++|+-++++ |+++|+|++.=...++++++-...||.. ++|.+++.
T Consensus 68 v~vLdigtGTGLLSmMAvra--gaD~vtA~EvfkPM~d~arkI~~kng~S--dkI~vInk 123 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRA--GADSVTACEVFKPMVDLARKIMHKNGMS--DKINVINK 123 (636)
T ss_pred EEEEEccCCccHHHHHHHHh--cCCeEEeehhhchHHHHHHHHHhcCCCc--cceeeecc
Confidence 37999999999999999996 8999999999999999999999999997 78888764
No 251
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=90.66 E-value=0.64 Score=47.19 Aligned_cols=93 Identities=17% Similarity=0.234 Sum_probs=74.7
Q ss_pred CCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEeeC
Q 047386 122 PPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDLD 201 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdLD 201 (581)
+.++.|+.|=-|.+++++.+. .-+..+++.|+++..++...+|+..|++. +++++.++|-...+.. ...+|+|.+-
T Consensus 17 ~~~iaDIGsDHAYLp~~Lv~~-~~~~~~va~eV~~gpl~~a~~~v~~~~l~--~~i~vr~~dgl~~l~~-~d~~d~ivIA 92 (226)
T COG2384 17 GARIADIGSDHAYLPIYLVKN-NPASTAVAGEVVPGPLESAIRNVKKNNLS--ERIDVRLGDGLAVLEL-EDEIDVIVIA 92 (226)
T ss_pred CCceeeccCchhHhHHHHHhc-CCcceEEEeecccCHHHHHHHHHHhcCCc--ceEEEeccCCccccCc-cCCcCEEEEe
Confidence 346999999999999999985 23889999999999999999999999996 7999999999766642 3478999887
Q ss_pred CCCCC--hHhHHHHHHhcc
Q 047386 202 PYGSP--SVFLDSAIQSVA 218 (581)
Q Consensus 202 PyGs~--~~fld~A~~~l~ 218 (581)
=-|-. +.+|+....-++
T Consensus 93 GMGG~lI~~ILee~~~~l~ 111 (226)
T COG2384 93 GMGGTLIREILEEGKEKLK 111 (226)
T ss_pred CCcHHHHHHHHHHhhhhhc
Confidence 76542 356665554443
No 252
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=90.62 E-value=0.36 Score=48.85 Aligned_cols=99 Identities=11% Similarity=0.086 Sum_probs=67.1
Q ss_pred CCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEeeC
Q 047386 122 PPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDLD 201 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdLD 201 (581)
-.++||+-||.|-.+=..+.. -.++|-++|-++.-++.+++.+...+- ...++++.-...+-.. ..+||+|-+=
T Consensus 56 ~~~alDcGAGIGRVTk~lLl~--~f~~VDlVEp~~~Fl~~a~~~l~~~~~---~v~~~~~~gLQ~f~P~-~~~YDlIW~Q 129 (218)
T PF05891_consen 56 FNRALDCGAGIGRVTKGLLLP--VFDEVDLVEPVEKFLEQAKEYLGKDNP---RVGEFYCVGLQDFTPE-EGKYDLIWIQ 129 (218)
T ss_dssp -SEEEEET-TTTHHHHHTCCC--C-SEEEEEES-HHHHHHHHHHTCCGGC---CEEEEEES-GGG-----TT-EEEEEEE
T ss_pred cceEEecccccchhHHHHHHH--hcCEeEEeccCHHHHHHHHHHhcccCC---CcceEEecCHhhccCC-CCcEeEEEeh
Confidence 348999999999999888874 589999999999999999987664221 2346666655555443 3589999543
Q ss_pred C---CCCC---hHhHHHHHHhccCCCeEEEE
Q 047386 202 P---YGSP---SVFLDSAIQSVADGGMLMCT 226 (581)
Q Consensus 202 P---yGs~---~~fld~A~~~l~~gGlL~vT 226 (581)
= |=+. ..||..+-++|+++|+|+|-
T Consensus 130 W~lghLTD~dlv~fL~RCk~~L~~~G~IvvK 160 (218)
T PF05891_consen 130 WCLGHLTDEDLVAFLKRCKQALKPNGVIVVK 160 (218)
T ss_dssp S-GGGS-HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred HhhccCCHHHHHHHHHHHHHhCcCCcEEEEE
Confidence 1 2222 36888889999999999995
No 253
>PRK11524 putative methyltransferase; Provisional
Probab=90.59 E-value=0.48 Score=49.25 Aligned_cols=44 Identities=11% Similarity=0.154 Sum_probs=38.6
Q ss_pred CCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHH
Q 047386 121 KPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIK 167 (581)
Q Consensus 121 ~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~ 167 (581)
.|..|||.|+|||.-++.+.+. | .+.+++|++++.++.+++=+.
T Consensus 208 ~GD~VLDPF~GSGTT~~AA~~l--g-R~~IG~Ei~~~Y~~~a~~Rl~ 251 (284)
T PRK11524 208 PGDIVLDPFAGSFTTGAVAKAS--G-RKFIGIEINSEYIKMGLRRLD 251 (284)
T ss_pred CCCEEEECCCCCcHHHHHHHHc--C-CCEEEEeCCHHHHHHHHHHHH
Confidence 4678999999999999998874 3 568999999999999988875
No 254
>PRK13699 putative methylase; Provisional
Probab=89.76 E-value=0.72 Score=46.70 Aligned_cols=46 Identities=13% Similarity=0.177 Sum_probs=38.9
Q ss_pred CCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHh
Q 047386 121 KPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFN 169 (581)
Q Consensus 121 ~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N 169 (581)
+|..|||.|+|||.-++.+.+. | ...+++|+++.-++.+.+-++..
T Consensus 163 ~g~~vlDpf~Gsgtt~~aa~~~--~-r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 163 PNAIVLDPFAGSGSTCVAALQS--G-RRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred CCCEEEeCCCCCCHHHHHHHHc--C-CCEEEEecCHHHHHHHHHHHHHH
Confidence 4668999999999999998874 3 46889999999999988877654
No 255
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=89.48 E-value=0.99 Score=45.97 Aligned_cols=95 Identities=18% Similarity=0.221 Sum_probs=70.1
Q ss_pred CCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEeeC
Q 047386 122 PPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDLD 201 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdLD 201 (581)
..+|.|+-||+|.--=..+..-|+ ..|+.+|.|++.++.+++- + -++++..+|+..+-. ...+|+|+..
T Consensus 31 ~~~v~DLGCGpGnsTelL~~RwP~-A~i~GiDsS~~Mla~Aa~r-----l---p~~~f~~aDl~~w~p--~~~~dllfaN 99 (257)
T COG4106 31 PRRVVDLGCGPGNSTELLARRWPD-AVITGIDSSPAMLAKAAQR-----L---PDATFEEADLRTWKP--EQPTDLLFAN 99 (257)
T ss_pred cceeeecCCCCCHHHHHHHHhCCC-CeEeeccCCHHHHHHHHHh-----C---CCCceecccHhhcCC--CCccchhhhh
Confidence 458999999999877766776665 4699999999988777432 1 146788999888754 3568999766
Q ss_pred C-CCC---ChHhHHHHHHhccCCCeEEEEe
Q 047386 202 P-YGS---PSVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 202 P-yGs---~~~fld~A~~~l~~gGlL~vTa 227 (581)
- +-. -...+..-+..|.+||.|.|.-
T Consensus 100 AvlqWlpdH~~ll~rL~~~L~Pgg~LAVQm 129 (257)
T COG4106 100 AVLQWLPDHPELLPRLVSQLAPGGVLAVQM 129 (257)
T ss_pred hhhhhccccHHHHHHHHHhhCCCceEEEEC
Confidence 4 211 1245666778899999999974
No 256
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=89.17 E-value=0.91 Score=40.45 Aligned_cols=87 Identities=25% Similarity=0.348 Sum_probs=61.1
Q ss_pred cccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhC--CCcccEEeeCCCCCChH
Q 047386 131 ASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTH--PKEFDVVDLDPYGSPSV 208 (581)
Q Consensus 131 gSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~--~~~fDvIdLDPyGs~~~ 208 (581)
|.|+.++.+|+- .| .+|++.|.++.-.+.+++ .|.. .-+.....|....+... ...+|+| +|.-|+ ..
T Consensus 1 ~vG~~a~q~ak~-~G-~~vi~~~~~~~k~~~~~~----~Ga~--~~~~~~~~~~~~~i~~~~~~~~~d~v-id~~g~-~~ 70 (130)
T PF00107_consen 1 GVGLMAIQLAKA-MG-AKVIATDRSEEKLELAKE----LGAD--HVIDYSDDDFVEQIRELTGGRGVDVV-IDCVGS-GD 70 (130)
T ss_dssp HHHHHHHHHHHH-TT-SEEEEEESSHHHHHHHHH----TTES--EEEETTTSSHHHHHHHHTTTSSEEEE-EESSSS-HH
T ss_pred ChHHHHHHHHHH-cC-CEEEEEECCHHHHHHHHh----hccc--ccccccccccccccccccccccceEE-EEecCc-HH
Confidence 579999999997 47 789999999999888764 4543 11222233445555432 2468877 566564 36
Q ss_pred hHHHHHHhccCCCeEEEEe
Q 047386 209 FLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 209 fld~A~~~l~~gGlL~vTa 227 (581)
-++.++++++++|.+.+..
T Consensus 71 ~~~~~~~~l~~~G~~v~vg 89 (130)
T PF00107_consen 71 TLQEAIKLLRPGGRIVVVG 89 (130)
T ss_dssp HHHHHHHHEEEEEEEEEES
T ss_pred HHHHHHHHhccCCEEEEEE
Confidence 7888999999999998864
No 257
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=89.08 E-value=0.99 Score=47.49 Aligned_cols=110 Identities=18% Similarity=0.175 Sum_probs=62.7
Q ss_pred CCeEEEecCccc--HHHHHH--hhhcCC---ccEEEEEeCCHHHHHHHHHHHH----HhCCCC-----------------
Q 047386 122 PPRVLEALSASG--LRALRY--AREVEG---IGQVVALDNDKASVEACRRNIK----FNGSVA----------------- 173 (581)
Q Consensus 122 ~~~VLDafsgSG--~rgIr~--a~E~~G---a~~V~anD~s~~Ave~i~~Ni~----~N~~~~----------------- 173 (581)
..+|+.+-|+|| ..+|.. ....+. --+|++.|||+.|++.+++.+= +-+++.
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 469999999999 333333 221111 1369999999999999887631 011110
Q ss_pred -------CCcEEEEehhHHHHHhhCCCcccEEeeC---CCCC---ChHhHHHHHHhccCCCeEEEEeccch
Q 047386 174 -------CSKVESHLADARVYMLTHPKEFDVVDLD---PYGS---PSVFLDSAIQSVADGGMLMCTATDMA 231 (581)
Q Consensus 174 -------~~~v~v~~~DA~~~l~~~~~~fDvIdLD---PyGs---~~~fld~A~~~l~~gGlL~vTaTD~a 231 (581)
...|.+.+.|....-......||+|+.= -|-. ....+....++|++||+|++-++++-
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~sEsl 266 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGHSENF 266 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeCcccc
Confidence 0122333333322100012468888751 1211 23456667789999999999775543
No 258
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=88.89 E-value=3.7 Score=41.13 Aligned_cols=110 Identities=15% Similarity=0.100 Sum_probs=62.7
Q ss_pred CCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHH-------HhCCCCCCcEEEEehhHHH--HHhhCC
Q 047386 122 PPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIK-------FNGSVACSKVESHLADARV--YMLTHP 192 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~-------~N~~~~~~~v~v~~~DA~~--~l~~~~ 192 (581)
+..++|+-||.|-.-+.+|.+. ++++++.+++.+...+..+.+.+ ..|.. ..++++.++|... ++...-
T Consensus 43 ~dvF~DlGSG~G~~v~~aal~~-~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~-~~~v~l~~gdfl~~~~~~~~~ 120 (205)
T PF08123_consen 43 DDVFYDLGSGVGNVVFQAALQT-GCKKSVGIEILPELHDLAEELLEELKKRMKHYGKR-PGKVELIHGDFLDPDFVKDIW 120 (205)
T ss_dssp T-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB----EEEEECS-TTTHHHHHHHG
T ss_pred CCEEEECCCCCCHHHHHHHHHc-CCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcc-cccceeeccCccccHhHhhhh
Confidence 4489999999999999999884 79999999999999988776554 33443 2578888888642 221111
Q ss_pred CcccEEeeCCCCCChHh---HHHHHHhccCCCeEEEEeccchhhcCCC
Q 047386 193 KEFDVVDLDPYGSPSVF---LDSAIQSVADGGMLMCTATDMAVLCGGN 237 (581)
Q Consensus 193 ~~fDvIdLDPyGs~~~f---ld~A~~~l~~gGlL~vTaTD~a~Lcg~~ 237 (581)
..-|||++.=+-...+. |...+..+++|..+ ||. ..||+..
T Consensus 121 s~AdvVf~Nn~~F~~~l~~~L~~~~~~lk~G~~I-Is~---~~~~~~~ 164 (205)
T PF08123_consen 121 SDADVVFVNNTCFDPDLNLALAELLLELKPGARI-IST---KPFCPRR 164 (205)
T ss_dssp HC-SEEEE--TTT-HHHHHHHHHHHTTS-TT-EE-EES---S-SS-TT
T ss_pred cCCCEEEEeccccCHHHHHHHHHHHhcCCCCCEE-EEC---CCcCCCC
Confidence 24699999875443333 23334556666554 553 3556443
No 259
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=88.64 E-value=1.4 Score=46.33 Aligned_cols=82 Identities=20% Similarity=0.155 Sum_probs=64.8
Q ss_pred CCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEeeC
Q 047386 122 PPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDLD 201 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdLD 201 (581)
.-.||++--|||.+-.+.+- -+++|+|+++||.-+..+.+=++-... ..+.+++++|+...= -..||+++-.
T Consensus 59 tD~VLEvGPGTGnLT~~lLe---~~kkVvA~E~Dprmvael~krv~gtp~--~~kLqV~~gD~lK~d---~P~fd~cVsN 130 (315)
T KOG0820|consen 59 TDVVLEVGPGTGNLTVKLLE---AGKKVVAVEIDPRMVAELEKRVQGTPK--SGKLQVLHGDFLKTD---LPRFDGCVSN 130 (315)
T ss_pred CCEEEEeCCCCCHHHHHHHH---hcCeEEEEecCcHHHHHHHHHhcCCCc--cceeeEEecccccCC---Ccccceeecc
Confidence 34899999999999999886 357899999999999999988774444 378999999975432 2579999876
Q ss_pred -CCCCChHhHH
Q 047386 202 -PYGSPSVFLD 211 (581)
Q Consensus 202 -PyGs~~~fld 211 (581)
||.-.+|++-
T Consensus 131 lPyqISSp~vf 141 (315)
T KOG0820|consen 131 LPYQISSPLVF 141 (315)
T ss_pred CCccccCHHHH
Confidence 8865567663
No 260
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=88.55 E-value=1.1 Score=47.64 Aligned_cols=86 Identities=15% Similarity=0.192 Sum_probs=59.7
Q ss_pred CCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhH---HHHHhhC--CCccc
Q 047386 122 PPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADA---RVYMLTH--PKEFD 196 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA---~~~l~~~--~~~fD 196 (581)
+..+||+--|.|+=+-..+..+++ .+|+++|.|+.|++..+++++.. . +++.+++++- ..+|..+ ...+|
T Consensus 21 ~g~~vD~T~G~GGHS~aiL~~~~~-~~li~~DrD~~a~~~a~~~l~~~--~--~r~~~~~~~F~~l~~~l~~~~~~~~~d 95 (310)
T PF01795_consen 21 GGIYVDCTFGGGGHSKAILEKLPN-GRLIGIDRDPEALERAKERLKKF--D--DRFIFIHGNFSNLDEYLKELNGINKVD 95 (310)
T ss_dssp T-EEEETT-TTSHHHHHHHHT-TT--EEEEEES-HHHHHHHHCCTCCC--C--TTEEEEES-GGGHHHHHHHTTTTS-EE
T ss_pred CceEEeecCCcHHHHHHHHHhCCC-CeEEEecCCHHHHHHHHHHHhhc--c--ceEEEEeccHHHHHHHHHHccCCCccC
Confidence 458999999999999999998877 78999999999999998887733 2 5788887653 4455544 25799
Q ss_pred EEeeCCCCCChHhHHHH
Q 047386 197 VVDLDPYGSPSVFLDSA 213 (581)
Q Consensus 197 vIdLDPyGs~~~fld~A 213 (581)
-|.+|- |-.+..||.+
T Consensus 96 giL~DL-GvSS~Qld~~ 111 (310)
T PF01795_consen 96 GILFDL-GVSSMQLDDP 111 (310)
T ss_dssp EEEEE--S--HHHHHTG
T ss_pred EEEEcc-ccCHHHhCCC
Confidence 999998 4445666643
No 261
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=87.86 E-value=0.65 Score=47.81 Aligned_cols=99 Identities=16% Similarity=0.185 Sum_probs=65.5
Q ss_pred eEEEecCcccHHHHHHhhhcCC-ccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHH--HHhh-CCCcccEEe
Q 047386 124 RVLEALSASGLRALRYAREVEG-IGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARV--YMLT-HPKEFDVVD 199 (581)
Q Consensus 124 ~VLDafsgSG~rgIr~a~E~~G-a~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~--~l~~-~~~~fDvId 199 (581)
+||++-||.|.-..-.++..+. --+|++.|.||.|+++.++|...+- .++.....|... +... ....+|+|.
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e----~~~~afv~Dlt~~~~~~~~~~~svD~it 149 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE----SRVEAFVWDLTSPSLKEPPEEGSVDIIT 149 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch----hhhcccceeccchhccCCCCcCccceEE
Confidence 7999999999988888876543 1369999999999999999999875 234444444321 1111 134677764
Q ss_pred eC------CCCCChHhHHHHHHhccCCCeEEEE
Q 047386 200 LD------PYGSPSVFLDSAIQSVADGGMLMCT 226 (581)
Q Consensus 200 LD------PyGs~~~fld~A~~~l~~gGlL~vT 226 (581)
+= |++.-..-++...++|++||+|++-
T Consensus 150 ~IFvLSAi~pek~~~a~~nl~~llKPGG~llfr 182 (264)
T KOG2361|consen 150 LIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFR 182 (264)
T ss_pred EEEEEeccChHHHHHHHHHHHHHhCCCcEEEEe
Confidence 31 1221112344445789999999874
No 262
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.54 E-value=0.32 Score=47.39 Aligned_cols=109 Identities=16% Similarity=0.107 Sum_probs=68.7
Q ss_pred cCCCCCeEEEecCc-ccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHH-hhCCCcc
Q 047386 118 RQLKPPRVLEALSA-SGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYM-LTHPKEF 195 (581)
Q Consensus 118 ~~~~~~~VLDafsg-SG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l-~~~~~~f 195 (581)
..+.+.+||++-+| ||+-||-.|..++ ...|+.-|-|..+++..++-+..|.......+.+..-+-...- ...+..|
T Consensus 26 n~~rg~~ilelgggft~laglmia~~a~-~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tF 104 (201)
T KOG3201|consen 26 NKIRGRRILELGGGFTGLAGLMIACKAP-DSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTF 104 (201)
T ss_pred hHHhHHHHHHhcCchhhhhhhheeeecC-CceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcc
Confidence 45677899999887 7888999888754 6889999999999999999998885432122322222211111 1123479
Q ss_pred cEEee-CC-CCC--ChHhHHHHHHhccCCCeEEEEe
Q 047386 196 DVVDL-DP-YGS--PSVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 196 DvIdL-DP-yGs--~~~fld~A~~~l~~gGlL~vTa 227 (581)
|+|.. |- |-+ -..+.|.--..|++.|--.+.+
T Consensus 105 DiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~fs 140 (201)
T KOG3201|consen 105 DIILAADCLFFDEHHESLVDTIKSLLRPSGRALLFS 140 (201)
T ss_pred cEEEeccchhHHHHHHHHHHHHHHHhCcccceeEec
Confidence 99863 43 321 1233443345677777655543
No 263
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=86.82 E-value=3.5 Score=41.50 Aligned_cols=92 Identities=22% Similarity=0.146 Sum_probs=61.7
Q ss_pred CCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHH-----HHHhh-C-CCc
Q 047386 122 PPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADAR-----VYMLT-H-PKE 194 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~-----~~l~~-~-~~~ 194 (581)
+.+|+|+.|+-|.++-.+++.+..-..|+++|+.|-.. + ..|.++++|.. .-|.. . ...
T Consensus 46 ~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~-----------~---~~V~~iq~d~~~~~~~~~l~~~l~~~~ 111 (205)
T COG0293 46 GMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP-----------I---PGVIFLQGDITDEDTLEKLLEALGGAP 111 (205)
T ss_pred CCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc-----------C---CCceEEeeeccCccHHHHHHHHcCCCC
Confidence 56899999999999999998764334599999998652 1 23666666654 22322 2 235
Q ss_pred ccEEeeCCCC----CCh-----------HhHHHHHHhccCCCeEEEEe
Q 047386 195 FDVVDLDPYG----SPS-----------VFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 195 fDvIdLDPyG----s~~-----------~fld~A~~~l~~gGlL~vTa 227 (581)
+|+|.-|+.- ... --++-|...|++||-+.+-.
T Consensus 112 ~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~ 159 (205)
T COG0293 112 VDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKV 159 (205)
T ss_pred cceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEE
Confidence 7999999842 211 11234567788998877653
No 264
>COG1439 Predicted nucleic acid-binding protein, consists of a PIN domain and a Zn-ribbon module [General function prediction only]
Probab=86.70 E-value=0.96 Score=44.39 Aligned_cols=109 Identities=16% Similarity=0.217 Sum_probs=60.5
Q ss_pred ccEEeeCCCCCChHhHHHHHHhcc-CCCeEEEEeccchhhcCCCcchhhhhccCccCCCccchhhhHHHHHHHHHHHHHH
Q 047386 195 FDVVDLDPYGSPSVFLDSAIQSVA-DGGMLMCTATDMAVLCGGNGEVCYSKYGSYPLRGKYCHEMALRILLACIESHANR 273 (581)
Q Consensus 195 fDvIdLDPyGs~~~fld~A~~~l~-~gGlL~vTaTD~a~Lcg~~~~~c~rkYG~~~~k~~~~hE~~lRill~~i~~~Aa~ 273 (581)
+-+-...|= ...+..+-+.++ .|.+.-+|-||+.+|.-.....+-. +..-...+ .+|...|..
T Consensus 55 ~~~kv~~P~---~e~vk~V~e~a~~tgd~~~LS~tDi~VlalAlel~~~~--~v~l~TdD-----------ysvQNVa~~ 118 (177)
T COG1439 55 GKVKVAEPS---TEYVKEVREAAKKTGDLGNLSPTDIEVLALALELGEEV--QVALATDD-----------YSVQNVALQ 118 (177)
T ss_pred cCeeEecCC---HHHHHHHHHHHHhhCcccccChhhHHHHHHHHhhcccc--ceeEEecc-----------hHHHHHHHH
Confidence 345556662 245565555554 6667788999999986322100000 01111222 346677787
Q ss_pred cCCceEEEeecccCceEEEEEEEEcChhhhccccccceEEEEcCCCCceeEeeccccccCCCCcccccCCCCCCCCCcCC
Q 047386 274 YKRYIEPVLSVQMDFYVRVFVRIYTSASAMKSTPLKLSYVYQCIGCDSFHLQPVGRTASNKNNSVRYLPGFGPVVPQLCS 353 (581)
Q Consensus 274 ~~r~i~Plls~s~dhY~RvfVrV~~~~~~~k~~~~k~g~v~~C~~C~~~~~q~lgr~~~~~~~~~~~~~~~~~~~~~~C~ 353 (581)
.|..+..+.. +++ .+ +-..|++.|.||+ |.. |.....||
T Consensus 119 Lgi~~~~~~~--------------~~~--I~---~v~~w~~rC~GC~--------~~f--------------~~~~~~Cp 157 (177)
T COG1439 119 LGLNVRSISY--------------KGK--IK---KVRKWRLRCHGCK--------RIF--------------PEPKDFCP 157 (177)
T ss_pred hCceEEeeec--------------cCc--cc---eEeeeeEEEecCc--------eec--------------CCCCCcCC
Confidence 7776654322 111 12 2478999999995 322 11234699
Q ss_pred CCCCccc
Q 047386 354 DCGKKFN 360 (581)
Q Consensus 354 ~Cg~~~~ 360 (581)
.||+++.
T Consensus 158 ~CG~~~~ 164 (177)
T COG1439 158 ICGSPLK 164 (177)
T ss_pred CCCCceE
Confidence 9998753
No 265
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=86.62 E-value=2 Score=44.30 Aligned_cols=92 Identities=21% Similarity=0.285 Sum_probs=54.8
Q ss_pred EEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhC---CCcccEEeeCC
Q 047386 126 LEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTH---PKEFDVVDLDP 202 (581)
Q Consensus 126 LDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~---~~~fDvIdLDP 202 (581)
|..+-||=.++.+++++ -++.+++|++|...+.+++|+... .++.+++.|.+.-+... ..+=-+|.+||
T Consensus 62 l~~YPGSP~ia~~llR~---qDrl~l~ELHp~d~~~L~~~~~~~-----~~v~v~~~DG~~~l~allPP~~rRglVLIDP 133 (245)
T PF04378_consen 62 LRFYPGSPAIAARLLRE---QDRLVLFELHPQDFEALKKNFRRD-----RRVRVHHRDGYEGLKALLPPPERRGLVLIDP 133 (245)
T ss_dssp --EEE-HHHHHHHHS-T---TSEEEEE--SHHHHHHHTTS--TT-----S-EEEE-S-HHHHHHHH-S-TTS-EEEEE--
T ss_pred cCcCCCCHHHHHHhCCc---cceEEEEecCchHHHHHHHHhccC-----CccEEEeCchhhhhhhhCCCCCCCeEEEECC
Confidence 77888998999999874 589999999999999999998732 47999999999877552 23447999998
Q ss_pred -CCCChHhHH---HHHHhcc--CCCeEEE
Q 047386 203 -YGSPSVFLD---SAIQSVA--DGGMLMC 225 (581)
Q Consensus 203 -yGs~~~fld---~A~~~l~--~gGlL~v 225 (581)
|-...+|-. ...++++ ..|+.+|
T Consensus 134 pYE~~~dy~~v~~~l~~a~kR~~~G~~~i 162 (245)
T PF04378_consen 134 PYEQKDDYQRVVDALAKALKRWPTGVYAI 162 (245)
T ss_dssp ---STTHHHHHHHHHHHHHHH-TTSEEEE
T ss_pred CCCCchHHHHHHHHHHHHHHhcCCcEEEE
Confidence 766555532 2223333 5566555
No 266
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=85.71 E-value=2.6 Score=47.40 Aligned_cols=82 Identities=17% Similarity=0.218 Sum_probs=56.5
Q ss_pred CCeEEEecCcccHHHHHHhhhcC---CccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHH-HhhCCCcccE
Q 047386 122 PPRVLEALSASGLRALRYAREVE---GIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVY-MLTHPKEFDV 197 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~~---Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~-l~~~~~~fDv 197 (581)
+..|.|++||||.+=+.+.+++. ....++..++++....+.+.|+.++++.. +.....++|...- -.....+||+
T Consensus 218 ~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~-~t~~~~~~dtl~~~d~~~~~~~D~ 296 (501)
T TIGR00497 218 VDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDY-ANFNIINADTLTTKEWENENGFEV 296 (501)
T ss_pred CCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCc-cccCcccCCcCCCccccccccCCE
Confidence 35899999999999888765432 23568999999999999999999988742 2233334443211 0001346999
Q ss_pred EeeCC-CC
Q 047386 198 VDLDP-YG 204 (581)
Q Consensus 198 IdLDP-yG 204 (581)
|..+| |+
T Consensus 297 v~~NpPf~ 304 (501)
T TIGR00497 297 VVSNPPYS 304 (501)
T ss_pred EeecCCcc
Confidence 98887 43
No 267
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=85.57 E-value=1.2 Score=33.50 Aligned_cols=29 Identities=38% Similarity=0.962 Sum_probs=19.2
Q ss_pred EEEEcCCCCc-ee-EeeccccccCCCCcccccCCCCCCCCCcCCCCCC
Q 047386 312 YVYQCIGCDS-FH-LQPVGRTASNKNNSVRYLPGFGPVVPQLCSDCGK 357 (581)
Q Consensus 312 ~v~~C~~C~~-~~-~q~lgr~~~~~~~~~~~~~~~~~~~~~~C~~Cg~ 357 (581)
|-|.|..||. |. ++++.. .....||.||+
T Consensus 4 Yey~C~~Cg~~fe~~~~~~~-----------------~~~~~CP~Cg~ 34 (42)
T PF09723_consen 4 YEYRCEECGHEFEVLQSISE-----------------DDPVPCPECGS 34 (42)
T ss_pred EEEEeCCCCCEEEEEEEcCC-----------------CCCCcCCCCCC
Confidence 7899999994 43 233321 12357999998
No 268
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=85.44 E-value=5 Score=43.13 Aligned_cols=97 Identities=24% Similarity=0.244 Sum_probs=66.0
Q ss_pred CCCeEEEecCc-ccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEe----hhHHHHHhhC--CC
Q 047386 121 KPPRVLEALSA-SGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHL----ADARVYMLTH--PK 193 (581)
Q Consensus 121 ~~~~VLDafsg-SG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~----~DA~~~l~~~--~~ 193 (581)
.+.+||=+-|| .|+..+.+|+-+ ||.+|++.|+++..++++++ .|.+. -....+ .+........ ..
T Consensus 169 ~Gs~vLV~GAGPIGl~t~l~Aka~-GA~~VVi~d~~~~Rle~Ak~----~Ga~~--~~~~~~~~~~~~~~~~v~~~~g~~ 241 (354)
T KOG0024|consen 169 KGSKVLVLGAGPIGLLTGLVAKAM-GASDVVITDLVANRLELAKK----FGATV--TDPSSHKSSPQELAELVEKALGKK 241 (354)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHc-CCCcEEEeecCHHHHHHHHH----hCCeE--EeeccccccHHHHHHHHHhhcccc
Confidence 46689888877 688999999975 89999999999999999988 45431 111112 1222222221 24
Q ss_pred cccEEeeCCCCCChHhHHHHHHhccCCCeEEEE
Q 047386 194 EFDVVDLDPYGSPSVFLDSAIQSVADGGMLMCT 226 (581)
Q Consensus 194 ~fDvIdLDPyGs~~~fld~A~~~l~~gGlL~vT 226 (581)
.||+.+ |-=|. .+-++.|+++++.||.+.+-
T Consensus 242 ~~d~~~-dCsG~-~~~~~aai~a~r~gGt~vlv 272 (354)
T KOG0024|consen 242 QPDVTF-DCSGA-EVTIRAAIKATRSGGTVVLV 272 (354)
T ss_pred CCCeEE-EccCc-hHHHHHHHHHhccCCEEEEe
Confidence 578764 33333 46788999999999996554
No 269
>PF10609 ParA: ParA/MinD ATPase like; InterPro: IPR019591 This entry represents ATPases involved in plasmid partitioning []. It also contains cytosolic Fe-S cluster assembling factors, NBP35 and CFD1 which are required for biogenesis and export of both ribosomal subunits probably through assembling the ISCs in RLI1, a protein which performs rRNA processing and ribosome export [, , ].; PDB: 2PH1_A 3KB1_B.
Probab=85.16 E-value=2.5 Score=36.54 Aligned_cols=31 Identities=26% Similarity=0.394 Sum_probs=20.8
Q ss_pred cEEeeC-CCCCChHhHHHHHHhccCCCeEEEEe
Q 047386 196 DVVDLD-PYGSPSVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 196 DvIdLD-PyGs~~~fld~A~~~l~~gGlL~vTa 227 (581)
|++++| |+|+....+. .++.+...|.+.||.
T Consensus 2 D~LiiD~PPGTgD~~l~-~~~~~~~~g~ivVTT 33 (81)
T PF10609_consen 2 DYLIIDLPPGTGDEHLT-LMQYLPIDGAIVVTT 33 (81)
T ss_dssp CEEEEE--SCSSSHHHH-HHHHH--SEEEEEE-
T ss_pred CEEEEeCCCCCCcHHHH-HHHhCCCCeEEEEeC
Confidence 788888 7898655543 577888888999985
No 270
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=84.98 E-value=11 Score=31.35 Aligned_cols=98 Identities=24% Similarity=0.203 Sum_probs=61.6
Q ss_pred EEEecCcccHHHHHHhhhcCCc-cEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHH-HhhCC-CcccEEeeC
Q 047386 125 VLEALSASGLRALRYAREVEGI-GQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVY-MLTHP-KEFDVVDLD 201 (581)
Q Consensus 125 VLDafsgSG~rgIr~a~E~~Ga-~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~-l~~~~-~~fDvIdLD 201 (581)
+||.-||+|... .++. ...- ..++.+|.++.+++..+......+. ..+.+..+|.... +.-.. ..||++...
T Consensus 52 ~ld~~~g~g~~~-~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 126 (257)
T COG0500 52 VLDIGCGTGRLA-LLAR-LGGRGAYVVGVDLSPEMLALARARAEGAGL---GLVDFVVADALGGVLPFEDSASFDLVISL 126 (257)
T ss_pred eEEecCCcCHHH-HHHH-hCCCCceEEEEeCCHHHHHHHHhhhhhcCC---CceEEEEeccccCCCCCCCCCceeEEeee
Confidence 999999999965 2222 1111 3688899999999984444432111 1156777777652 32222 378998443
Q ss_pred CCC--C-ChHhHHHHHHhccCCCeEEEEe
Q 047386 202 PYG--S-PSVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 202 PyG--s-~~~fld~A~~~l~~gGlL~vTa 227 (581)
... . ....+....+.++++|.+.+..
T Consensus 127 ~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 155 (257)
T COG0500 127 LVLHLLPPAKALRELLRVLKPGGRLVLSD 155 (257)
T ss_pred eehhcCCHHHHHHHHHHhcCCCcEEEEEe
Confidence 321 1 2567777788899999888865
No 271
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=84.68 E-value=4.6 Score=42.95 Aligned_cols=86 Identities=15% Similarity=0.193 Sum_probs=66.9
Q ss_pred CCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHH---HhhC-CCcccE
Q 047386 122 PPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVY---MLTH-PKEFDV 197 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~---l~~~-~~~fDv 197 (581)
+..+||+-=|-|+-|-..+...++..+++++|.|+.|++..++-+..++ +++.++++....+ +... -.++|-
T Consensus 24 ~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~----~r~~~v~~~F~~l~~~l~~~~i~~vDG 99 (314)
T COG0275 24 DGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD----GRVTLVHGNFANLAEALKELGIGKVDG 99 (314)
T ss_pred CcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC----CcEEEEeCcHHHHHHHHHhcCCCceeE
Confidence 3589999999999999999988777889999999999999999998765 4788888764433 2222 257899
Q ss_pred EeeCCCCCChHhHHH
Q 047386 198 VDLDPYGSPSVFLDS 212 (581)
Q Consensus 198 IdLDPyGs~~~fld~ 212 (581)
|.+|= |=.++.||.
T Consensus 100 iL~DL-GVSS~QLD~ 113 (314)
T COG0275 100 ILLDL-GVSSPQLDD 113 (314)
T ss_pred EEEec-cCCccccCC
Confidence 99986 333455654
No 272
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=84.51 E-value=8.5 Score=40.33 Aligned_cols=137 Identities=20% Similarity=0.146 Sum_probs=83.8
Q ss_pred CCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEE----------------------
Q 047386 122 PPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVES---------------------- 179 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v---------------------- 179 (581)
+.+||-.-||.|-++.+.|.. |. .|.+||.|--. ++--|.-+|+....+.+++
T Consensus 57 ~~~VLVPGsGLGRLa~Eia~~--G~-~~~gnE~S~~M--ll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~i 131 (270)
T PF07942_consen 57 KIRVLVPGSGLGRLAWEIAKL--GY-AVQGNEFSYFM--LLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRI 131 (270)
T ss_pred ccEEEEcCCCcchHHHHHhhc--cc-eEEEEEchHHH--HHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEe
Confidence 568999999999999999994 76 69999999766 7778888886432122222
Q ss_pred -----------------EehhHHHHHhhC--CCcccEE----eeCCCCCChHhHHHHHHhccCCCeEEEEeccchhhcCC
Q 047386 180 -----------------HLADARVYMLTH--PKEFDVV----DLDPYGSPSVFLDSAIQSVADGGMLMCTATDMAVLCGG 236 (581)
Q Consensus 180 -----------------~~~DA~~~l~~~--~~~fDvI----dLDPyGs~~~fld~A~~~l~~gGlL~vTaTD~a~Lcg~ 236 (581)
..||...+-... ...||+| |||-=-.-..+|+.--++|++||+- |- .|-
T Consensus 132 PDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~W-IN-------~GP 203 (270)
T PF07942_consen 132 PDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGGYW-IN-------FGP 203 (270)
T ss_pred CCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCCEE-Ee-------cCC
Confidence 222322222111 2467777 4554111125777777899999943 33 232
Q ss_pred CcchhhhhccCccCCCccchhhhHHHHHHHHHHHHHHcCCceE
Q 047386 237 NGEVCYSKYGSYPLRGKYCHEMALRILLACIESHANRYKRYIE 279 (581)
Q Consensus 237 ~~~~c~rkYG~~~~k~~~~hE~~lRill~~i~~~Aa~~~r~i~ 279 (581)
- +||..+.. ...|+.+.+=+..|.+.+.++|..+.
T Consensus 204 L------lyh~~~~~--~~~~~sveLs~eEi~~l~~~~GF~~~ 238 (270)
T PF07942_consen 204 L------LYHFEPMS--IPNEMSVELSLEEIKELIEKLGFEIE 238 (270)
T ss_pred c------cccCCCCC--CCCCcccCCCHHHHHHHHHHCCCEEE
Confidence 2 34544441 12334455556666677777887765
No 273
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=84.39 E-value=0.92 Score=46.73 Aligned_cols=98 Identities=14% Similarity=0.164 Sum_probs=64.0
Q ss_pred eEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEeeCC-
Q 047386 124 RVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDLDP- 202 (581)
Q Consensus 124 ~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdLDP- 202 (581)
.++|+-||+| .+.+.+.|. -++|++.|+|+.-++.+++--...-.. -.......|-..|+.. .+..|+|..--
T Consensus 36 ~a~DvG~G~G-qa~~~iae~--~k~VIatD~s~~mL~~a~k~~~~~y~~--t~~~ms~~~~v~L~g~-e~SVDlI~~Aqa 109 (261)
T KOG3010|consen 36 LAWDVGTGNG-QAARGIAEH--YKEVIATDVSEAMLKVAKKHPPVTYCH--TPSTMSSDEMVDLLGG-EESVDLITAAQA 109 (261)
T ss_pred eEEEeccCCC-cchHHHHHh--hhhheeecCCHHHHHHhhcCCCccccc--CCccccccccccccCC-Ccceeeehhhhh
Confidence 7999999999 666666653 588999999999999887643322221 1123344444555532 45678885543
Q ss_pred --CCCChHhHHHHHHhcc-CCCeEEEEe
Q 047386 203 --YGSPSVFLDSAIQSVA-DGGMLMCTA 227 (581)
Q Consensus 203 --yGs~~~fld~A~~~l~-~gGlL~vTa 227 (581)
+-.-..|...|-+.|+ +||++.|=+
T Consensus 110 ~HWFdle~fy~~~~rvLRk~Gg~iavW~ 137 (261)
T KOG3010|consen 110 VHWFDLERFYKEAYRVLRKDGGLIAVWN 137 (261)
T ss_pred HHhhchHHHHHHHHHHcCCCCCEEEEEE
Confidence 1112367888888888 455888754
No 274
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=84.26 E-value=3.4 Score=37.60 Aligned_cols=66 Identities=20% Similarity=0.252 Sum_probs=36.0
Q ss_pred chhhhH-HHHHHHHHHHHHHcCCc-eEEE------eecccC----ceEEEEEEEEcChhhhccccccceEEEEcCCCCc
Q 047386 255 CHEMAL-RILLACIESHANRYKRY-IEPV------LSVQMD----FYVRVFVRIYTSASAMKSTPLKLSYVYQCIGCDS 321 (581)
Q Consensus 255 ~hE~~l-Rill~~i~~~Aa~~~r~-i~Pl------ls~s~d----hY~RvfVrV~~~~~~~k~~~~k~g~v~~C~~C~~ 321 (581)
.||++| .-++..+...|.+.+-. |.=+ ||.-.. |+|-++.+ .+-...|+-.+..+-..++|..||.
T Consensus 1 MHElsi~~~iv~~v~~~a~~~~~~rV~~V~l~iG~ls~v~pe~L~f~f~~~~~-~T~~egA~L~I~~vp~~~~C~~Cg~ 78 (113)
T PRK12380 1 MHELSLCQSAVEIIQRQAEQHDVKRVTAVWLEIGALSCVEESAVRFSFEIVCH-GTVAQGCDLHIVYKPAQAWCWDCSQ 78 (113)
T ss_pred CcHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEcCccccCHHHHHHHHHHHhC-CCccCCCEEEEEeeCcEEEcccCCC
Confidence 488887 44666677777776643 3211 222221 22222211 2334445555566777899999984
No 275
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=84.07 E-value=0.93 Score=34.50 Aligned_cols=33 Identities=18% Similarity=0.223 Sum_probs=20.4
Q ss_pred eEEEEcCCCCceeEeeccccccCCCCcccccCCCCCCCCCcCCCCCCcccc
Q 047386 311 SYVYQCIGCDSFHLQPVGRTASNKNNSVRYLPGFGPVVPQLCSDCGKKFNM 361 (581)
Q Consensus 311 g~v~~C~~C~~~~~q~lgr~~~~~~~~~~~~~~~~~~~~~~C~~Cg~~~~~ 361 (581)
+..|.|++||..... .+... ...||+||+++.+
T Consensus 1 ~~~y~C~~CG~~~~~---------------~~~~~---~~~Cp~CG~~~~~ 33 (46)
T PRK00398 1 MAEYKCARCGREVEL---------------DEYGT---GVRCPYCGYRILF 33 (46)
T ss_pred CCEEECCCCCCEEEE---------------CCCCC---ceECCCCCCeEEE
Confidence 357999999863211 11111 3579999987653
No 276
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=83.82 E-value=4.4 Score=41.23 Aligned_cols=98 Identities=18% Similarity=0.187 Sum_probs=71.0
Q ss_pred eEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEE-EEehhHHHHHhhCCCcccEEeeC-
Q 047386 124 RVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVE-SHLADARVYMLTHPKEFDVVDLD- 201 (581)
Q Consensus 124 ~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~-v~~~DA~~~l~~~~~~fDvIdLD- 201 (581)
.||++-||||.- +-|..-.|+ .+|+++|-|+..-+.+.+-++.|.- .+++ +..+|+..+-.-....||+|+--
T Consensus 79 ~vLEvgcGtG~N-fkfy~~~p~-~svt~lDpn~~mee~~~ks~~E~k~---~~~~~fvva~ge~l~~l~d~s~DtVV~Tl 153 (252)
T KOG4300|consen 79 DVLEVGCGTGAN-FKFYPWKPI-NSVTCLDPNEKMEEIADKSAAEKKP---LQVERFVVADGENLPQLADGSYDTVVCTL 153 (252)
T ss_pred ceEEecccCCCC-cccccCCCC-ceEEEeCCcHHHHHHHHHHHhhccC---cceEEEEeechhcCcccccCCeeeEEEEE
Confidence 589999999964 334333354 5799999999999999999998854 3566 77888876542235689998532
Q ss_pred ---CCCCChHhHHHHHHhccCCCeEEEE
Q 047386 202 ---PYGSPSVFLDSAIQSVADGGMLMCT 226 (581)
Q Consensus 202 ---PyGs~~~fld~A~~~l~~gGlL~vT 226 (581)
.--.|..-|...-++|++||.+++-
T Consensus 154 vLCSve~~~k~L~e~~rlLRpgG~iifi 181 (252)
T KOG4300|consen 154 VLCSVEDPVKQLNEVRRLLRPGGRIIFI 181 (252)
T ss_pred EEeccCCHHHHHHHHHHhcCCCcEEEEE
Confidence 1233456777778899999987663
No 277
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=83.74 E-value=3.7 Score=37.43 Aligned_cols=67 Identities=21% Similarity=0.242 Sum_probs=37.3
Q ss_pred chhhhH-HHHHHHHHHHHHHcCCc-eEE----E--eecccC----ceEEEEEEEEcChhhhccccccceEEEEcCCCCce
Q 047386 255 CHEMAL-RILLACIESHANRYKRY-IEP----V--LSVQMD----FYVRVFVRIYTSASAMKSTPLKLSYVYQCIGCDSF 322 (581)
Q Consensus 255 ~hE~~l-Rill~~i~~~Aa~~~r~-i~P----l--ls~s~d----hY~RvfVrV~~~~~~~k~~~~k~g~v~~C~~C~~~ 322 (581)
.||++| .-++..+...|.+.+.. |.= + ||.-.. |.|-++. -.+-...|+-.+...-..++|..||.+
T Consensus 1 MHE~si~~~iv~~v~~~a~~~~~~~V~~V~l~iG~ls~V~p~~L~f~f~~~~-~~t~~egA~L~i~~~p~~~~C~~Cg~~ 79 (114)
T PRK03681 1 MHEITLCQRALELIEQQAAKHGAKRVTGVWLKIGAFSCVETSSLAFCFDLVC-RGTVAEGCKLHLEEQEAECWCETCQQY 79 (114)
T ss_pred CcHHHHHHHHHHHHHHHHHHcCCCeEEEEEEEEcCccccCHHHHHHHHHHHh-CCCccCCCEEEEEeeCcEEEcccCCCe
Confidence 488887 34667777788877744 321 1 222222 2322321 133344455555667778899999853
No 278
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=83.74 E-value=4.8 Score=43.49 Aligned_cols=89 Identities=19% Similarity=0.285 Sum_probs=60.1
Q ss_pred eEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEe-hhHHHHHhhCCCcccEEeeCC
Q 047386 124 RVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHL-ADARVYMLTHPKEFDVVDLDP 202 (581)
Q Consensus 124 ~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~-~DA~~~l~~~~~~fDvIdLDP 202 (581)
..+=.++|.|..+|.||+-. | .+|+++|.+++-.+.+++ .|.+ .+.... .|...-+. +.||+|+.==
T Consensus 170 V~I~G~GGlGh~avQ~Aka~-g-a~Via~~~~~~K~e~a~~----lGAd---~~i~~~~~~~~~~~~---~~~d~ii~tv 237 (339)
T COG1064 170 VAVVGAGGLGHMAVQYAKAM-G-AEVIAITRSEEKLELAKK----LGAD---HVINSSDSDALEAVK---EIADAIIDTV 237 (339)
T ss_pred EEEECCcHHHHHHHHHHHHc-C-CeEEEEeCChHHHHHHHH----hCCc---EEEEcCCchhhHHhH---hhCcEEEECC
Confidence 45566779999999999964 6 689999999998877754 4432 111111 33333332 3499875332
Q ss_pred CCCChHhHHHHHHhccCCCeEEEEe
Q 047386 203 YGSPSVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 203 yGs~~~fld~A~~~l~~gGlL~vTa 227 (581)
. ..-++.++++|+.||-|.+-.
T Consensus 238 ~---~~~~~~~l~~l~~~G~~v~vG 259 (339)
T COG1064 238 G---PATLEPSLKALRRGGTLVLVG 259 (339)
T ss_pred C---hhhHHHHHHHHhcCCEEEEEC
Confidence 1 356677899999999998863
No 279
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=83.72 E-value=5.4 Score=41.27 Aligned_cols=99 Identities=24% Similarity=0.152 Sum_probs=56.6
Q ss_pred CCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCC---CcEEE---EehhHHHHHhhCCCcc
Q 047386 122 PPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVAC---SKVES---HLADARVYMLTHPKEF 195 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~---~~v~v---~~~DA~~~l~~~~~~f 195 (581)
..+||++-||||+-||-+|... + ..|+.=| .+..++.++.|...|+.... ..+.+ ..+++-.........|
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~-~-~~v~ltD-~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~ 163 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLL-G-AEVVLTD-LPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPF 163 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHh-c-ceeccCC-chhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcc
Confidence 5579999999999999999952 3 4566655 45667777777666654321 12222 2333333322212228
Q ss_pred cEEe-eCCCC---CChHhHHHHHHhccCCCeE
Q 047386 196 DVVD-LDPYG---SPSVFLDSAIQSVADGGML 223 (581)
Q Consensus 196 DvId-LDPyG---s~~~fld~A~~~l~~gGlL 223 (581)
|+|. -|++. ++.+.+..-..++..+|.+
T Consensus 164 DlilasDvvy~~~~~e~Lv~tla~ll~~~~~i 195 (248)
T KOG2793|consen 164 DLILASDVVYEEESFEGLVKTLAFLLAKDGTI 195 (248)
T ss_pred cEEEEeeeeecCCcchhHHHHHHHHHhcCCeE
Confidence 9875 57742 2334444333455666633
No 280
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=83.62 E-value=1.7 Score=31.65 Aligned_cols=11 Identities=36% Similarity=1.008 Sum_probs=9.6
Q ss_pred EEEEcCCCCce
Q 047386 312 YVYQCIGCDSF 322 (581)
Q Consensus 312 ~v~~C~~C~~~ 322 (581)
|.|.|..||..
T Consensus 4 Y~y~C~~Cg~~ 14 (41)
T smart00834 4 YEYRCEDCGHT 14 (41)
T ss_pred EEEEcCCCCCE
Confidence 78999999983
No 281
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=82.74 E-value=3.4 Score=42.86 Aligned_cols=79 Identities=13% Similarity=0.247 Sum_probs=52.4
Q ss_pred ecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEeeCCCCCCh
Q 047386 128 ALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDLDPYGSPS 207 (581)
Q Consensus 128 afsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdLDPyGs~~ 207 (581)
..++.|.+++.+|+. .|+..|++.|.++.-.+.+... . +++.+ .. ....||+|+ |--|.+
T Consensus 152 G~G~vG~~a~q~ak~-~G~~~v~~~~~~~~rl~~a~~~----~--------~i~~~--~~---~~~g~Dvvi-d~~G~~- 211 (308)
T TIGR01202 152 GHGTLGRLLARLTKA-AGGSPPAVWETNPRRRDGATGY----E--------VLDPE--KD---PRRDYRAIY-DASGDP- 211 (308)
T ss_pred CCCHHHHHHHHHHHH-cCCceEEEeCCCHHHHHhhhhc----c--------ccChh--hc---cCCCCCEEE-ECCCCH-
Confidence 456667777888886 5888888899988765544321 1 11100 00 134689764 777763
Q ss_pred HhHHHHHHhccCCCeEEEE
Q 047386 208 VFLDSAIQSVADGGMLMCT 226 (581)
Q Consensus 208 ~fld~A~~~l~~gGlL~vT 226 (581)
..++.++++++++|.+.+.
T Consensus 212 ~~~~~~~~~l~~~G~iv~~ 230 (308)
T TIGR01202 212 SLIDTLVRRLAKGGEIVLA 230 (308)
T ss_pred HHHHHHHHhhhcCcEEEEE
Confidence 4678899999999998874
No 282
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=82.62 E-value=4.7 Score=36.75 Aligned_cols=66 Identities=24% Similarity=0.303 Sum_probs=34.3
Q ss_pred chhhhHH-HHHHHHHHHHHHcCCc-eEEE------eecccC----ceEEEEEEEEcChhhhccccccceEEEEcCCCCc
Q 047386 255 CHEMALR-ILLACIESHANRYKRY-IEPV------LSVQMD----FYVRVFVRIYTSASAMKSTPLKLSYVYQCIGCDS 321 (581)
Q Consensus 255 ~hE~~lR-ill~~i~~~Aa~~~r~-i~Pl------ls~s~d----hY~RvfVrV~~~~~~~k~~~~k~g~v~~C~~C~~ 321 (581)
.||++|= -++..+...|.+.+.. |.=+ ||.-.. |.|.++.+ .+-...++-.+...-...+|..||.
T Consensus 1 MHE~sia~~iv~~v~~~a~~~~~~~V~~V~l~iG~ls~V~p~~L~faf~~~~~-~t~~ega~L~I~~~p~~~~C~~Cg~ 78 (115)
T TIGR00100 1 MHELSLAEAMLEIVEEQAEKHQAKKVTRVTLEIGELSCVNPSQLQFAFEVVRE-GTVAEGAKLNIEDEPVECECEDCSE 78 (115)
T ss_pred CcHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEccccccCHHHHHHHHHHHhC-CCccCCCEEEEEeeCcEEEcccCCC
Confidence 4888863 4666677777776643 2211 222221 23222211 2223334444456677789999984
No 283
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=81.35 E-value=4 Score=37.06 Aligned_cols=67 Identities=18% Similarity=0.225 Sum_probs=31.3
Q ss_pred chhhhH-HHHHHHHHHHHHHcCCc-eEEE------eeccc----CceEEEEEEEEcChhhhccccccceEEEEcCCCCce
Q 047386 255 CHEMAL-RILLACIESHANRYKRY-IEPV------LSVQM----DFYVRVFVRIYTSASAMKSTPLKLSYVYQCIGCDSF 322 (581)
Q Consensus 255 ~hE~~l-Rill~~i~~~Aa~~~r~-i~Pl------ls~s~----dhY~RvfVrV~~~~~~~k~~~~k~g~v~~C~~C~~~ 322 (581)
.||++| .-++..+.+.|.+.+-. |.=+ ||.-. .|+|-++.+ .+-...++-.+...-....|..||.-
T Consensus 1 MHE~si~~~iv~~v~~~a~~~~~~kV~~V~l~iG~ls~V~pe~L~f~f~~~~~-~T~~e~a~L~Ie~~p~~~~C~~Cg~~ 79 (113)
T PF01155_consen 1 MHELSIAQSIVEIVEEEAEENGAKKVTKVRLEIGELSGVEPEALRFAFEVLAE-GTILEGAELEIEEVPARARCRDCGHE 79 (113)
T ss_dssp -HHHHHHHHHHHHHHHHHHCTT-SEEEEEEEEEETTS---HHHHHHHHHHHHC-CSTTTT-EEEEEEE--EEEETTTS-E
T ss_pred CchHHHHHHHHHHHHHHHHHcCCCEEEEEEEEECCcccCCHHHHHHHHHHHhC-CCCccCCEEEEEecCCcEECCCCCCE
Confidence 488886 45667777777766632 1100 11111 122222221 23344455445667778999999853
No 284
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=81.16 E-value=3.9 Score=37.42 Aligned_cols=66 Identities=20% Similarity=0.211 Sum_probs=33.0
Q ss_pred chhhhHH-HHHHHHHHHHHHcCCc-eEE----E--eecccCceEE----EEEEEEc-ChhhhccccccceEEEEcCCCCc
Q 047386 255 CHEMALR-ILLACIESHANRYKRY-IEP----V--LSVQMDFYVR----VFVRIYT-SASAMKSTPLKLSYVYQCIGCDS 321 (581)
Q Consensus 255 ~hE~~lR-ill~~i~~~Aa~~~r~-i~P----l--ls~s~dhY~R----vfVrV~~-~~~~~k~~~~k~g~v~~C~~C~~ 321 (581)
.||++|- -++..+...|.+.+.. |.= + ||.-....++ ++.+ .+ -...++-.+...-....|..||.
T Consensus 1 MHE~si~~~il~~v~~~a~~~~~~~V~~V~l~IG~ls~V~pe~L~faf~~~~~-~T~~~ega~L~Ie~vp~~~~C~~Cg~ 79 (117)
T PRK00564 1 MHEYSVVSSLIALCEEHAKKNQAHKIEKVVVGIGERSGMDKSLFVSAFETFRE-ESLVCKDAILDIVDEKVELECKDCSH 79 (117)
T ss_pred CcHHHHHHHHHHHHHHHHHHcCCCeEEEEEEEEccccCcCHHHHHHHHHHHhc-CCcccCCCEEEEEecCCEEEhhhCCC
Confidence 4788863 4556666666666543 110 0 2222222222 2111 11 12344444556677889999984
No 285
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=80.28 E-value=9.9 Score=40.18 Aligned_cols=97 Identities=23% Similarity=0.188 Sum_probs=59.8
Q ss_pred CCeEEEe-cCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhh--CCCcccEE
Q 047386 122 PPRVLEA-LSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLT--HPKEFDVV 198 (581)
Q Consensus 122 ~~~VLDa-fsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~--~~~~fDvI 198 (581)
+.+||=. -++.|...+.+|+. .|+.+|++.|.++.-.+.+++ .|.+ .-+.....|....+.. ....+|+|
T Consensus 177 g~~VlV~G~g~vG~~a~~~ak~-~G~~~Vi~~~~~~~~~~~~~~----~Ga~--~~i~~~~~~~~~~i~~~~~~~g~d~v 249 (358)
T TIGR03451 177 GDSVAVIGCGGVGDAAIAGAAL-AGASKIIAVDIDDRKLEWARE----FGAT--HTVNSSGTDPVEAIRALTGGFGADVV 249 (358)
T ss_pred CCEEEEECCCHHHHHHHHHHHH-cCCCeEEEEcCCHHHHHHHHH----cCCc--eEEcCCCcCHHHHHHHHhCCCCCCEE
Confidence 4566543 23445555667776 588889999999988777753 3542 1111222333332222 12458977
Q ss_pred eeCCCCCChHhHHHHHHhccCCCeEEEEe
Q 047386 199 DLDPYGSPSVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 199 dLDPyGs~~~fld~A~~~l~~gGlL~vTa 227 (581)
+ |--|.+ ..++.+++++++||.+++..
T Consensus 250 i-d~~g~~-~~~~~~~~~~~~~G~iv~~G 276 (358)
T TIGR03451 250 I-DAVGRP-ETYKQAFYARDLAGTVVLVG 276 (358)
T ss_pred E-ECCCCH-HHHHHHHHHhccCCEEEEEC
Confidence 4 877754 45677899999999988754
No 286
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=78.99 E-value=12 Score=38.31 Aligned_cols=101 Identities=16% Similarity=0.058 Sum_probs=73.4
Q ss_pred CCCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhC-CCcccEE
Q 047386 120 LKPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTH-PKEFDVV 198 (581)
Q Consensus 120 ~~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~-~~~fDvI 198 (581)
.+|.+||++-=|-|+..--.- | ....+=+.++.+|..++-++++.=.- .++|.+..+-=...+... ...||=|
T Consensus 100 tkggrvLnVGFGMgIidT~iQ-e-~~p~~H~IiE~hp~V~krmr~~gw~e----k~nViil~g~WeDvl~~L~d~~FDGI 173 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQ-E-APPDEHWIIEAHPDVLKRMRDWGWRE----KENVIILEGRWEDVLNTLPDKHFDGI 173 (271)
T ss_pred hCCceEEEeccchHHHHHHHh-h-cCCcceEEEecCHHHHHHHHhccccc----ccceEEEecchHhhhccccccCccee
Confidence 357899999888887764432 3 23456789999999999998775432 357777776444444332 3469999
Q ss_pred eeCCCCCC----hHhHHHHHHhccCCCeEEEE
Q 047386 199 DLDPYGSP----SVFLDSAIQSVADGGMLMCT 226 (581)
Q Consensus 199 dLDPyGs~----~~fld~A~~~l~~gGlL~vT 226 (581)
.-|-|+-- ..|.+.++++|+++|.+...
T Consensus 174 ~yDTy~e~yEdl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 174 YYDTYSELYEDLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred EeechhhHHHHHHHHHHHHhhhcCCCceEEEe
Confidence 99999642 36788999999999998775
No 287
>PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp. (strain PCC 6803) hypothetical protein slr0846. These are small proteins of 12 to 18kDa which seem to contain a signal sequence, and may represent a family of probable transcriptional regulators.; PDB: 3T8T_A 3T8R_A 3K69_A 3LWF_C 1XD7_A 2Y75_E 1YLF_C.
Probab=78.52 E-value=3.9 Score=34.59 Aligned_cols=55 Identities=18% Similarity=0.173 Sum_probs=41.9
Q ss_pred eeHHHHhhhcCCCCCCHHHHHHHHHHCCceEEecccCCCccccCCCHHH--HHHHHHH
Q 047386 414 LSLHNLCSTLKCTSPSAVMFRSAVINAGYRVSGTHVNPLGLKTDAPMGV--IWDIMRC 469 (581)
Q Consensus 414 y~l~~l~~~lk~~~P~~~~~~~aL~~~GY~aSrTH~~p~~iKTdAP~~~--i~di~r~ 469 (581)
.+..+||..++++.+-+.++++.|.++||=.|.... ..|+.=.-|++. |+||++.
T Consensus 26 ~s~~eiA~~~~i~~~~l~kil~~L~~~Gli~s~~G~-~GGy~L~~~~~~Itl~dI~~a 82 (83)
T PF02082_consen 26 VSSKEIAERLGISPSYLRKILQKLKKAGLIESSRGR-GGGYRLARPPEEITLLDIVRA 82 (83)
T ss_dssp BEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETST-TSEEEESS-CCGSBHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHhhCCeeEecCCC-CCceeecCCHHHCCHHHHHHh
Confidence 999999999999999999999999999996555432 355655555554 7888764
No 288
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=78.52 E-value=10 Score=38.47 Aligned_cols=101 Identities=20% Similarity=0.166 Sum_probs=73.3
Q ss_pred CCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhh--CCCcccEE
Q 047386 121 KPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLT--HPKEFDVV 198 (581)
Q Consensus 121 ~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~--~~~~fDvI 198 (581)
.+.+||=+-|+||.-.=+.+-= -|...|++++.++....-+-.=++. ..++-++.+||+.--.. .-+..|+|
T Consensus 76 ~g~~VLYLGAasGTTvSHVSDI-v~~G~iYaVEfs~R~~reLl~~a~~-----R~Ni~PIL~DA~~P~~Y~~~Ve~VDvi 149 (231)
T COG1889 76 EGSKVLYLGAASGTTVSHVSDI-VGEGRIYAVEFSPRPMRELLDVAEK-----RPNIIPILEDARKPEKYRHLVEKVDVI 149 (231)
T ss_pred CCCEEEEeeccCCCcHhHHHhc-cCCCcEEEEEecchhHHHHHHHHHh-----CCCceeeecccCCcHHhhhhcccccEE
Confidence 3668999999999888777653 3566799999999887655444442 14678999999753221 12568999
Q ss_pred eeCC--CCCChHhHHHHHHhccCCC--eEEEEe
Q 047386 199 DLDP--YGSPSVFLDSAIQSVADGG--MLMCTA 227 (581)
Q Consensus 199 dLDP--yGs~~~fld~A~~~l~~gG--lL~vTa 227 (581)
+-|= +.-..-+++-|-..|++|| +|.|-+
T Consensus 150 y~DVAQp~Qa~I~~~Na~~FLk~~G~~~i~iKA 182 (231)
T COG1889 150 YQDVAQPNQAEILADNAEFFLKKGGYVVIAIKA 182 (231)
T ss_pred EEecCCchHHHHHHHHHHHhcccCCeEEEEEEe
Confidence 9995 4555667888888899999 566654
No 289
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=77.98 E-value=4.1 Score=40.48 Aligned_cols=110 Identities=21% Similarity=0.237 Sum_probs=55.1
Q ss_pred CCeEEEecCccc--HHHHHHhhh--cCC-cc---EEEEEeCCHHHHHHHHHHH----HHhCCC-----------------
Q 047386 122 PPRVLEALSASG--LRALRYARE--VEG-IG---QVVALDNDKASVEACRRNI----KFNGSV----------------- 172 (581)
Q Consensus 122 ~~~VLDafsgSG--~rgIr~a~E--~~G-a~---~V~anD~s~~Ave~i~~Ni----~~N~~~----------------- 172 (581)
..+|+.+-|+|| ..||..+.. .++ .. +|++.|+|+.+++.+++-+ .+.+++
T Consensus 32 ~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~ 111 (196)
T PF01739_consen 32 PLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGYR 111 (196)
T ss_dssp -EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCTT
T ss_pred CeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCcee
Confidence 469999999999 333333221 112 22 7999999999999876421 011111
Q ss_pred ----CCCcEEEEehhHHHHHhhCCCcccEEeeCC---CCCC---hHhHHHHHHhccCCCeEEEEeccchh
Q 047386 173 ----ACSKVESHLADARVYMLTHPKEFDVVDLDP---YGSP---SVFLDSAIQSVADGGMLMCTATDMAV 232 (581)
Q Consensus 173 ----~~~~v~v~~~DA~~~l~~~~~~fDvIdLDP---yGs~---~~fld~A~~~l~~gGlL~vTaTD~a~ 232 (581)
....|++.+.|... .......||+|+.== |-.+ ...++...++|++||+|++-.++.-.
T Consensus 112 v~~~lr~~V~F~~~NL~~-~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~sE~l~ 180 (196)
T PF01739_consen 112 VKPELRKMVRFRRHNLLD-PDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHSESLP 180 (196)
T ss_dssp E-HHHHTTEEEEE--TT--S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT--ST
T ss_pred EChHHcCceEEEecccCC-CCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecCccCC
Confidence 01245555555444 111235789885432 2111 23455556789999999998765544
No 290
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=77.70 E-value=7.7 Score=35.95 Aligned_cols=47 Identities=19% Similarity=0.215 Sum_probs=40.7
Q ss_pred CCeEEEecCcccHHHHHHhh-----hcCCccEEEEEeCCHHHHHHHHHHHHHhC
Q 047386 122 PPRVLEALSASGLRALRYAR-----EVEGIGQVVALDNDKASVEACRRNIKFNG 170 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~-----E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~ 170 (581)
...|+|+-||-|.+|...+. . ++ -.|+++|.++..++.+.+..+..+
T Consensus 26 ~~~vvD~GsG~GyLs~~La~~l~~~~-~~-~~v~~iD~~~~~~~~a~~~~~~~~ 77 (141)
T PF13679_consen 26 CITVVDLGSGKGYLSRALAHLLCNSS-PN-LRVLGIDCNESLVESAQKRAQKLG 77 (141)
T ss_pred CCEEEEeCCChhHHHHHHHHHHHhcC-CC-CeEEEEECCcHHHHHHHHHHHHhc
Confidence 55899999999999999887 4 33 579999999999999988888776
No 291
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=77.18 E-value=3.1 Score=32.08 Aligned_cols=12 Identities=42% Similarity=1.259 Sum_probs=10.1
Q ss_pred EEEEcCCCCc-ee
Q 047386 312 YVYQCIGCDS-FH 323 (581)
Q Consensus 312 ~v~~C~~C~~-~~ 323 (581)
|.|.|..||. |.
T Consensus 4 Yey~C~~Cg~~fe 16 (52)
T TIGR02605 4 YEYRCTACGHRFE 16 (52)
T ss_pred EEEEeCCCCCEeE
Confidence 7899999997 44
No 292
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=77.12 E-value=15 Score=38.46 Aligned_cols=97 Identities=21% Similarity=0.227 Sum_probs=59.2
Q ss_pred CCeEEEe-cCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhh-CCCcccEEe
Q 047386 122 PPRVLEA-LSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLT-HPKEFDVVD 199 (581)
Q Consensus 122 ~~~VLDa-fsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~-~~~~fDvId 199 (581)
+.+||=. -++.|...+.+|+. .|+..|++.|.+++-.+.+++ .|.+ .-+.....+...+... ....+|.+.
T Consensus 161 g~~vlV~G~g~vG~~~~~~a~~-~G~~~v~~~~~~~~~~~~~~~----~Ga~--~~i~~~~~~~~~~~~~~~~~~~d~~v 233 (347)
T PRK10309 161 GKNVIIIGAGTIGLLAIQCAVA-LGAKSVTAIDINSEKLALAKS----LGAM--QTFNSREMSAPQIQSVLRELRFDQLI 233 (347)
T ss_pred CCEEEEECCCHHHHHHHHHHHH-cCCCeEEEECCCHHHHHHHHH----cCCc--eEecCcccCHHHHHHHhcCCCCCeEE
Confidence 4454443 34455556667776 588888999999988776632 3432 1111111222222221 134688778
Q ss_pred eCCCCCChHhHHHHHHhccCCCeEEEE
Q 047386 200 LDPYGSPSVFLDSAIQSVADGGMLMCT 226 (581)
Q Consensus 200 LDPyGs~~~fld~A~~~l~~gGlL~vT 226 (581)
+|.-|.+ ..++.++++|++||.+.+-
T Consensus 234 ~d~~G~~-~~~~~~~~~l~~~G~iv~~ 259 (347)
T PRK10309 234 LETAGVP-QTVELAIEIAGPRAQLALV 259 (347)
T ss_pred EECCCCH-HHHHHHHHHhhcCCEEEEE
Confidence 8987753 4778899999999998764
No 293
>TIGR00354 polC DNA polymerase, archaeal type II, large subunit. This model represents the large subunit, DP2, of a two subunit novel Archaeal replicative DNA polymerase first characterized for Pyrococcus furiosus. Structure of DP2 appears to be organized as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit.
Probab=76.84 E-value=2.2 Score=51.21 Aligned_cols=34 Identities=12% Similarity=0.112 Sum_probs=23.6
Q ss_pred CcCCCCCCcccccccccccCCCCHHHHHHHHHHhh
Q 047386 350 QLCSDCGKKFNMGGPIWSGRIHDQEWVNSILGEVK 384 (581)
Q Consensus 350 ~~C~~Cg~~~~~~GPlW~GpLhd~~fv~~ml~~~~ 384 (581)
..||.||++.....|-|. .|.=.+.+.+.++.+.
T Consensus 638 ~rCP~CG~~Te~~~pc~~-~i~l~~~~~~A~~~lg 671 (1095)
T TIGR00354 638 LKCPVCGELTEQLYYGKR-KVDLRELYEEAIANLG 671 (1095)
T ss_pred ccCCCCCCccccccceeE-EecHHHHHHHHHHHhC
Confidence 479999999877777643 4444566777776664
No 294
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=76.69 E-value=13 Score=37.89 Aligned_cols=95 Identities=23% Similarity=0.219 Sum_probs=56.3
Q ss_pred CCeEEEe-cCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehh-HHHHHhh-CCCcccEE
Q 047386 122 PPRVLEA-LSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLAD-ARVYMLT-HPKEFDVV 198 (581)
Q Consensus 122 ~~~VLDa-fsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~D-A~~~l~~-~~~~fDvI 198 (581)
+.+||=. -++.|..++.+|+. .|+..|++.|.++.-.+++++ .|.+ .+ +...+ ...+... ....+|+|
T Consensus 121 g~~VlV~G~G~vG~~~~~~ak~-~G~~~Vi~~~~~~~r~~~a~~----~Ga~---~~-i~~~~~~~~~~~~~~~~g~d~v 191 (280)
T TIGR03366 121 GRRVLVVGAGMLGLTAAAAAAA-AGAARVVAADPSPDRRELALS----FGAT---AL-AEPEVLAERQGGLQNGRGVDVA 191 (280)
T ss_pred CCEEEEECCCHHHHHHHHHHHH-cCCCEEEEECCCHHHHHHHHH----cCCc---Ee-cCchhhHHHHHHHhCCCCCCEE
Confidence 4455433 23344455666775 588889999999988777654 3442 11 11111 1112211 23468987
Q ss_pred eeCCCCCChHhHHHHHHhccCCCeEEEEe
Q 047386 199 DLDPYGSPSVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 199 dLDPyGs~~~fld~A~~~l~~gGlL~vTa 227 (581)
+|--|.+ .-++.++++++++|.+.+..
T Consensus 192 -id~~G~~-~~~~~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 192 -LEFSGAT-AAVRACLESLDVGGTAVLAG 218 (280)
T ss_pred -EECCCCh-HHHHHHHHHhcCCCEEEEec
Confidence 4766654 45667899999999988754
No 295
>COG3392 Adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=76.66 E-value=1.4 Score=45.90 Aligned_cols=45 Identities=16% Similarity=0.146 Sum_probs=34.8
Q ss_pred CCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhC
Q 047386 122 PPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNG 170 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~ 170 (581)
+..+.|+|||||+.|-++-++ | ..|++||+---.. ++-+|.-.|.
T Consensus 28 ~k~f~DiFaGtGVV~~~fkk~--~-n~iiaNDle~ysy-lln~~yi~N~ 72 (330)
T COG3392 28 GKIFCDIFAGTGVVGRFFKKA--G-NKIIANDLEYYSY-LLNQNYIGNI 72 (330)
T ss_pred CCeeeeeccCccHHHHHHHHh--c-chhhhchHHHHHH-HHHHHHhhcc
Confidence 568999999999999999886 3 6799999876554 5555555554
No 296
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=76.64 E-value=17 Score=37.85 Aligned_cols=97 Identities=23% Similarity=0.222 Sum_probs=57.7
Q ss_pred CCeEEE-ecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhh-CCCcccEEe
Q 047386 122 PPRVLE-ALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLT-HPKEFDVVD 199 (581)
Q Consensus 122 ~~~VLD-afsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~-~~~~fDvId 199 (581)
+.+||= .-++.|...+.+|+. .|++.|++.|.+++-.+.+++ .|.+ .-+.....+...++.. ....||+|
T Consensus 164 g~~vlV~G~G~vG~~~~~~ak~-~G~~~vi~~~~~~~~~~~~~~----~ga~--~~i~~~~~~~~~~~~~~~~~~~d~v- 235 (339)
T cd08239 164 RDTVLVVGAGPVGLGALMLARA-LGAEDVIGVDPSPERLELAKA----LGAD--FVINSGQDDVQEIRELTSGAGADVA- 235 (339)
T ss_pred CCEEEEECCCHHHHHHHHHHHH-cCCCEEEEECCCHHHHHHHHH----hCCC--EEEcCCcchHHHHHHHhCCCCCCEE-
Confidence 444443 334455556667776 588889999999887666543 3542 1111112222222221 13468977
Q ss_pred eCCCCCChHhHHHHHHhccCCCeEEEEe
Q 047386 200 LDPYGSPSVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 200 LDPyGs~~~fld~A~~~l~~gGlL~vTa 227 (581)
+|--|.+ ..+..++++|+.+|.+++..
T Consensus 236 id~~g~~-~~~~~~~~~l~~~G~~v~~g 262 (339)
T cd08239 236 IECSGNT-AARRLALEAVRPWGRLVLVG 262 (339)
T ss_pred EECCCCH-HHHHHHHHHhhcCCEEEEEc
Confidence 4666653 45677899999999987754
No 297
>PRK12496 hypothetical protein; Provisional
Probab=75.25 E-value=1.8 Score=41.89 Aligned_cols=12 Identities=25% Similarity=0.769 Sum_probs=10.0
Q ss_pred cceEEEEcCCCC
Q 047386 309 KLSYVYQCIGCD 320 (581)
Q Consensus 309 k~g~v~~C~~C~ 320 (581)
..-|.|+|.+|+
T Consensus 123 ~~~w~~~C~gC~ 134 (164)
T PRK12496 123 VIKWRKVCKGCK 134 (164)
T ss_pred heeeeEECCCCC
Confidence 456889999996
No 298
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=74.61 E-value=17 Score=38.73 Aligned_cols=96 Identities=25% Similarity=0.236 Sum_probs=57.6
Q ss_pred CCeEEE-ecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhh-CCCcccEEe
Q 047386 122 PPRVLE-ALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLT-HPKEFDVVD 199 (581)
Q Consensus 122 ~~~VLD-afsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~-~~~~fDvId 199 (581)
+.+||= .-++.|...+.+|+. .|++.|++.|.++.-.+++++ .|.+ .-+.....|....+.. ....+|+|+
T Consensus 192 g~~VlV~G~G~vG~~a~~lak~-~G~~~Vi~~~~~~~r~~~a~~----~Ga~--~~i~~~~~~~~~~i~~~~~~g~d~vi 264 (371)
T cd08281 192 GQSVAVVGLGGVGLSALLGAVA-AGASQVVAVDLNEDKLALARE----LGAT--ATVNAGDPNAVEQVRELTGGGVDYAF 264 (371)
T ss_pred CCEEEEECCCHHHHHHHHHHHH-cCCCcEEEEcCCHHHHHHHHH----cCCc--eEeCCCchhHHHHHHHHhCCCCCEEE
Confidence 444444 334445555666775 588889999999998877754 4543 1111122232222222 223688774
Q ss_pred eCCCCCChHhHHHHHHhccCCCeEEEE
Q 047386 200 LDPYGSPSVFLDSAIQSVADGGMLMCT 226 (581)
Q Consensus 200 LDPyGs~~~fld~A~~~l~~gGlL~vT 226 (581)
|--|.+ ..++.++++++++|.+++.
T Consensus 265 -d~~G~~-~~~~~~~~~l~~~G~iv~~ 289 (371)
T cd08281 265 -EMAGSV-PALETAYEITRRGGTTVTA 289 (371)
T ss_pred -ECCCCh-HHHHHHHHHHhcCCEEEEE
Confidence 655543 4677789999999988764
No 299
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=74.61 E-value=13 Score=31.38 Aligned_cols=78 Identities=17% Similarity=0.187 Sum_probs=47.5
Q ss_pred EEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhh-CCCcccEEeeC---CCCCChHhHHHHHHhccCCCeEE
Q 047386 149 VVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLT-HPKEFDVVDLD---PYGSPSVFLDSAIQSVADGGMLM 224 (581)
Q Consensus 149 V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~-~~~~fDvIdLD---PyGs~~~fld~A~~~l~~gGlL~ 224 (581)
|..+|-++...+.+++-++..++. .+. ...|...++.. ....||+|++| |-++...++...-+.-....++.
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~~~~---~v~-~~~~~~~~~~~~~~~~~d~iiid~~~~~~~~~~~~~~i~~~~~~~~ii~ 76 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERAGYE---EVT-TASSGEEALELLKKHPPDLIIIDLELPDGDGLELLEQIRQINPSIPIIV 76 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTEE---EEE-EESSHHHHHHHHHHSTESEEEEESSSSSSBHHHHHHHHHHHTTTSEEEE
T ss_pred cEEEECCHHHHHHHHHHHHhCCCC---EEE-EECCHHHHHHHhcccCceEEEEEeeeccccccccccccccccccccEEE
Confidence 578899999999999999977762 232 33444443322 12469999999 33334455554323223455666
Q ss_pred EEeccc
Q 047386 225 CTATDM 230 (581)
Q Consensus 225 vTaTD~ 230 (581)
+|.++.
T Consensus 77 ~t~~~~ 82 (112)
T PF00072_consen 77 VTDEDD 82 (112)
T ss_dssp EESSTS
T ss_pred ecCCCC
Confidence 775443
No 300
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=74.57 E-value=19 Score=37.43 Aligned_cols=95 Identities=16% Similarity=0.198 Sum_probs=59.3
Q ss_pred CeEEEe--cCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhh-CCCcccEEe
Q 047386 123 PRVLEA--LSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLT-HPKEFDVVD 199 (581)
Q Consensus 123 ~~VLDa--fsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~-~~~~fDvId 199 (581)
.+||=. =+|.|...+.+|+. .|+.+|++.+.+++-.+.+++. .|.+ .-+.....|....+.. ....+|+|+
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~-~G~~~Vi~~~~s~~~~~~~~~~---lGa~--~vi~~~~~~~~~~i~~~~~~gvd~vi 229 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRL-LGCSRVVGICGSDEKCQLLKSE---LGFD--AAINYKTDNVAERLRELCPEGVDVYF 229 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHH-cCCCEEEEEcCCHHHHHHHHHh---cCCc--EEEECCCCCHHHHHHHHCCCCceEEE
Confidence 455432 25677777888886 5887899999998876666553 3443 1111112233222222 234689875
Q ss_pred eCCCCCChHhHHHHHHhccCCCeEEEE
Q 047386 200 LDPYGSPSVFLDSAIQSVADGGMLMCT 226 (581)
Q Consensus 200 LDPyGs~~~fld~A~~~l~~gGlL~vT 226 (581)
|.-|.+ .+..++++|+++|.++.-
T Consensus 230 -d~~g~~--~~~~~~~~l~~~G~iv~~ 253 (345)
T cd08293 230 -DNVGGE--ISDTVISQMNENSHIILC 253 (345)
T ss_pred -ECCCcH--HHHHHHHHhccCCEEEEE
Confidence 877653 357889999999988764
No 301
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=74.23 E-value=13 Score=39.80 Aligned_cols=96 Identities=25% Similarity=0.312 Sum_probs=60.4
Q ss_pred eEEEecCc-ccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEeh-hHHHHHhh--CCCcccEEe
Q 047386 124 RVLEALSA-SGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLA-DARVYMLT--HPKEFDVVD 199 (581)
Q Consensus 124 ~VLDafsg-SG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~-DA~~~l~~--~~~~fDvId 199 (581)
+|+=.-+| .|++++.+++- .|+..|+++|.++.-++++++=. +.+ .+..... |+...+.. .+..||+|+
T Consensus 171 ~V~V~GaGpIGLla~~~a~~-~Ga~~Viv~d~~~~Rl~~A~~~~---g~~---~~~~~~~~~~~~~~~~~t~g~g~D~vi 243 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKL-LGASVVIVVDRSPERLELAKEAG---GAD---VVVNPSEDDAGAEILELTGGRGADVVI 243 (350)
T ss_pred EEEEECCCHHHHHHHHHHHH-cCCceEEEeCCCHHHHHHHHHhC---CCe---EeecCccccHHHHHHHHhCCCCCCEEE
Confidence 56655444 35555556664 68999999999999999887611 111 1111111 33322222 234699874
Q ss_pred eCCCCCChHhHHHHHHhccCCCeEEEEec
Q 047386 200 LDPYGSPSVFLDSAIQSVADGGMLMCTAT 228 (581)
Q Consensus 200 LDPyGs~~~fld~A~~~l~~gGlL~vTaT 228 (581)
|-=|+ ...++.|++++++||.+.+..+
T Consensus 244 -e~~G~-~~~~~~ai~~~r~gG~v~~vGv 270 (350)
T COG1063 244 -EAVGS-PPALDQALEALRPGGTVVVVGV 270 (350)
T ss_pred -ECCCC-HHHHHHHHHHhcCCCEEEEEec
Confidence 44353 4578889999999999988753
No 302
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=73.51 E-value=16 Score=38.32 Aligned_cols=87 Identities=20% Similarity=0.244 Sum_probs=55.3
Q ss_pred CCeEEE-ecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccE-Ee
Q 047386 122 PPRVLE-ALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDV-VD 199 (581)
Q Consensus 122 ~~~VLD-afsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDv-Id 199 (581)
+.+||= ..++.|...+.+|+. .|+ .|++.|.+++-.+++++ .|.+ .++..+ . ...+.+|+ |+
T Consensus 166 g~~VlV~G~g~iG~~a~~~a~~-~G~-~vi~~~~~~~~~~~a~~----~Ga~-----~vi~~~--~---~~~~~~d~~i~ 229 (329)
T TIGR02822 166 GGRLGLYGFGGSAHLTAQVALA-QGA-TVHVMTRGAAARRLALA----LGAA-----SAGGAY--D---TPPEPLDAAIL 229 (329)
T ss_pred CCEEEEEcCCHHHHHHHHHHHH-CCC-eEEEEeCChHHHHHHHH----hCCc-----eecccc--c---cCcccceEEEE
Confidence 445443 225566667778886 577 59999999988766644 5553 122110 0 11235785 55
Q ss_pred eCCCCCChHhHHHHHHhccCCCeEEEEe
Q 047386 200 LDPYGSPSVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 200 LDPyGs~~~fld~A~~~l~~gGlL~vTa 227 (581)
.|.-+ ..+..++++|++||.+.+..
T Consensus 230 ~~~~~---~~~~~~~~~l~~~G~~v~~G 254 (329)
T TIGR02822 230 FAPAG---GLVPPALEALDRGGVLAVAG 254 (329)
T ss_pred CCCcH---HHHHHHHHhhCCCcEEEEEe
Confidence 67654 36778999999999998754
No 303
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=73.37 E-value=19 Score=36.89 Aligned_cols=94 Identities=17% Similarity=0.157 Sum_probs=59.2
Q ss_pred CCeEEE--ecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhh-CCCcccEE
Q 047386 122 PPRVLE--ALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLT-HPKEFDVV 198 (581)
Q Consensus 122 ~~~VLD--afsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~-~~~~fDvI 198 (581)
+.+||= +-++.|...+.+|+. .|+ +|++.+.+++-.+.+++ .|.+ .-+.....|....+.. ....+|+|
T Consensus 144 g~~vlI~ga~g~vG~~aiqlA~~-~G~-~vi~~~~s~~~~~~l~~----~Ga~--~vi~~~~~~~~~~v~~~~~~gvd~v 215 (329)
T cd08294 144 GETVVVNGAAGAVGSLVGQIAKI-KGC-KVIGCAGSDDKVAWLKE----LGFD--AVFNYKTVSLEEALKEAAPDGIDCY 215 (329)
T ss_pred CCEEEEecCccHHHHHHHHHHHH-cCC-EEEEEeCCHHHHHHHHH----cCCC--EEEeCCCccHHHHHHHHCCCCcEEE
Confidence 445543 345666777888886 577 58999999888777754 3543 1122222333332322 23468977
Q ss_pred eeCCCCCChHhHHHHHHhccCCCeEEEE
Q 047386 199 DLDPYGSPSVFLDSAIQSVADGGMLMCT 226 (581)
Q Consensus 199 dLDPyGs~~~fld~A~~~l~~gGlL~vT 226 (581)
+ |..|. +.+..++++++++|.++..
T Consensus 216 l-d~~g~--~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 216 F-DNVGG--EFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred E-ECCCH--HHHHHHHHhhccCCEEEEE
Confidence 5 88775 6677889999999998764
No 304
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=71.81 E-value=3.5 Score=48.76 Aligned_cols=52 Identities=27% Similarity=0.575 Sum_probs=29.6
Q ss_pred cccceEEEEcCCCCceeEeeccccccCCCCccccc-CCCCCCCCCcCCCCCCc-cccccc
Q 047386 307 PLKLSYVYQCIGCDSFHLQPVGRTASNKNNSVRYL-PGFGPVVPQLCSDCGKK-FNMGGP 364 (581)
Q Consensus 307 ~~k~g~v~~C~~C~~~~~q~lgr~~~~~~~~~~~~-~~~~~~~~~~C~~Cg~~-~~~~GP 364 (581)
+..-||+..|++|+.+-+-.-. .+..++. =+.-...+..||.||+. +...|+
T Consensus 438 C~~Cg~v~~Cp~Cd~~lt~H~~------~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~ 491 (730)
T COG1198 438 CRDCGYIAECPNCDSPLTLHKA------TGQLRCHYCGYQEPIPQSCPECGSEHLRAVGP 491 (730)
T ss_pred cccCCCcccCCCCCcceEEecC------CCeeEeCCCCCCCCCCCCCCCCCCCeeEEecc
Confidence 3457999999999876432111 1122221 11123456789999987 444554
No 305
>COG2260 Predicted Zn-ribbon RNA-binding protein [Translation, ribosomal structure and biogenesis]
Probab=70.10 E-value=2.9 Score=33.97 Aligned_cols=20 Identities=20% Similarity=0.391 Sum_probs=15.0
Q ss_pred CcCCCCCCcccccccccccC
Q 047386 350 QLCSDCGKKFNMGGPIWSGR 369 (581)
Q Consensus 350 ~~C~~Cg~~~~~~GPlW~Gp 369 (581)
..|++||+...+.=|-=-.|
T Consensus 18 e~Cp~CG~~t~~~~PprFSP 37 (59)
T COG2260 18 EKCPVCGGDTKVPHPPRFSP 37 (59)
T ss_pred ccCCCCCCccccCCCCCCCc
Confidence 46999999988877754444
No 306
>PLN02740 Alcohol dehydrogenase-like
Probab=69.93 E-value=26 Score=37.53 Aligned_cols=96 Identities=20% Similarity=0.230 Sum_probs=57.1
Q ss_pred CCeEEE-ecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEe--hhHHHHHhh-CCCcccE
Q 047386 122 PPRVLE-ALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHL--ADARVYMLT-HPKEFDV 197 (581)
Q Consensus 122 ~~~VLD-afsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~--~DA~~~l~~-~~~~fDv 197 (581)
+.+||= ..++.|..++.+|+. .|+..|+++|.++.-.+.+++ .|.+ .-+.... .|....+.. ....||+
T Consensus 199 g~~VlV~G~G~vG~~a~q~ak~-~G~~~Vi~~~~~~~r~~~a~~----~Ga~--~~i~~~~~~~~~~~~v~~~~~~g~dv 271 (381)
T PLN02740 199 GSSVAIFGLGAVGLAVAEGARA-RGASKIIGVDINPEKFEKGKE----MGIT--DFINPKDSDKPVHERIREMTGGGVDY 271 (381)
T ss_pred CCEEEEECCCHHHHHHHHHHHH-CCCCcEEEEcCChHHHHHHHH----cCCc--EEEecccccchHHHHHHHHhCCCCCE
Confidence 444443 334455556667776 588789999999988777754 3542 1111111 122222222 1226886
Q ss_pred EeeCCCCCChHhHHHHHHhccCC-CeEEEE
Q 047386 198 VDLDPYGSPSVFLDSAIQSVADG-GMLMCT 226 (581)
Q Consensus 198 IdLDPyGs~~~fld~A~~~l~~g-GlL~vT 226 (581)
| +|--|.+ ..+..++.++++| |.+.+-
T Consensus 272 v-id~~G~~-~~~~~a~~~~~~g~G~~v~~ 299 (381)
T PLN02740 272 S-FECAGNV-EVLREAFLSTHDGWGLTVLL 299 (381)
T ss_pred E-EECCCCh-HHHHHHHHhhhcCCCEEEEE
Confidence 6 6776654 5677889999886 877664
No 307
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=68.75 E-value=30 Score=35.77 Aligned_cols=95 Identities=17% Similarity=0.152 Sum_probs=59.6
Q ss_pred CCCeEEEe--cCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEeh--hHHHHHhh-CCCcc
Q 047386 121 KPPRVLEA--LSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLA--DARVYMLT-HPKEF 195 (581)
Q Consensus 121 ~~~~VLDa--fsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~--DA~~~l~~-~~~~f 195 (581)
.+.+||=. =++.|...+.+|+. .|+ +|++.+.+++-.+.+++ .|.+ .+--... +....+.. ....+
T Consensus 138 ~g~~VLI~ga~g~vG~~aiqlAk~-~G~-~Vi~~~~s~~~~~~~~~----lGa~---~vi~~~~~~~~~~~~~~~~~~gv 208 (325)
T TIGR02825 138 GGETVMVNAAAGAVGSVVGQIAKL-KGC-KVVGAAGSDEKVAYLKK----LGFD---VAFNYKTVKSLEETLKKASPDGY 208 (325)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHH-cCC-EEEEEeCCHHHHHHHHH----cCCC---EEEeccccccHHHHHHHhCCCCe
Confidence 34566532 24567777888886 577 58999999887777743 3543 2211111 22222322 23468
Q ss_pred cEEeeCCCCCChHhHHHHHHhccCCCeEEEEe
Q 047386 196 DVVDLDPYGSPSVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 196 DvIdLDPyGs~~~fld~A~~~l~~gGlL~vTa 227 (581)
|+|+ |..|. +.++.++++++++|.+++-.
T Consensus 209 dvv~-d~~G~--~~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 209 DCYF-DNVGG--EFSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred EEEE-ECCCH--HHHHHHHHHhCcCcEEEEec
Confidence 8875 88775 45688899999999988643
No 308
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=68.67 E-value=16 Score=38.03 Aligned_cols=71 Identities=23% Similarity=0.218 Sum_probs=51.3
Q ss_pred CCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhh-CCCcccEEee
Q 047386 122 PPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLT-HPKEFDVVDL 200 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~-~~~~fDvIdL 200 (581)
+.+|||+-||-=-+++-+..+.+++ .+++.|||...++.+..=+...+.. .++...|. |.. .....|+..|
T Consensus 106 p~sVlDigCGlNPlalp~~~~~~~a-~Y~a~DID~~~ve~l~~~l~~l~~~----~~~~v~Dl---~~~~~~~~~DlaLl 177 (251)
T PF07091_consen 106 PDSVLDIGCGLNPLALPWMPEAPGA-TYIAYDIDSQLVEFLNAFLAVLGVP----HDARVRDL---LSDPPKEPADLALL 177 (251)
T ss_dssp -SEEEEET-TTCHHHHHTTTSSTT--EEEEEESBHHHHHHHHHHHHHTT-C----EEEEEE-T---TTSHTTSEESEEEE
T ss_pred CchhhhhhccCCceehhhcccCCCc-EEEEEeCCHHHHHHHHHHHHhhCCC----cceeEeee---eccCCCCCcchhhH
Confidence 4589999999999999998875555 7999999999999999999999875 34444443 322 2345777755
No 309
>PRK00762 hypA hydrogenase nickel incorporation protein; Provisional
Probab=68.62 E-value=16 Score=33.79 Aligned_cols=65 Identities=15% Similarity=0.248 Sum_probs=35.6
Q ss_pred chhhhH-HHHHHHHHHHHHHcCCc-eE---E-E--eeccc----CceEEEEEEEEcChhhhccccccceEEEEcCCCCc
Q 047386 255 CHEMAL-RILLACIESHANRYKRY-IE---P-V--LSVQM----DFYVRVFVRIYTSASAMKSTPLKLSYVYQCIGCDS 321 (581)
Q Consensus 255 ~hE~~l-Rill~~i~~~Aa~~~r~-i~---P-l--ls~s~----dhY~RvfVrV~~~~~~~k~~~~k~g~v~~C~~C~~ 321 (581)
.||++| .-++..+...|.+++-. |. - + ||.-. .|+|-++ .-.+-...++-.+...-...+| .||.
T Consensus 1 MHE~si~~~il~~v~~~a~~~~~~rV~~V~l~IG~ls~V~pe~L~faf~~~-~~gT~~egA~L~I~~vp~~~~C-~Cg~ 77 (124)
T PRK00762 1 MHELSMACEIVEAVIDTAEKNNATEVTEVTLEIGRLTMLNPEQLRFMLDVL-AEGTIAEDADLIVEMIPVEIEC-ECGY 77 (124)
T ss_pred CcHHHHHHHHHHHHHHHHHHcCCCeEEEEEEEECCccccCHHHHHHHHHHH-hCCCCcCCCEEEEEecCeeEEe-eCcC
Confidence 488887 34666677777766654 11 0 0 22211 2343332 2233344555555677788999 9984
No 310
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=67.95 E-value=42 Score=34.65 Aligned_cols=89 Identities=19% Similarity=0.213 Sum_probs=54.3
Q ss_pred ecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhh--CCCcccEEeeCCCCC
Q 047386 128 ALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLT--HPKEFDVVDLDPYGS 205 (581)
Q Consensus 128 afsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~--~~~~fDvIdLDPyGs 205 (581)
+-++.|...+.+|+. .|+ .|++.+.++.-.+.+++ .|.+ .-+.....|....+.. ....+|+|+ |.-|.
T Consensus 152 g~g~vG~~a~q~a~~-~G~-~vi~~~~~~~~~~~~~~----~g~~--~~i~~~~~~~~~~v~~~~~~~~~d~vi-d~~g~ 222 (324)
T cd08291 152 AASALGRMLVRLCKA-DGI-KVINIVRRKEQVDLLKK----IGAE--YVLNSSDPDFLEDLKELIAKLNATIFF-DAVGG 222 (324)
T ss_pred CccHHHHHHHHHHHH-cCC-EEEEEeCCHHHHHHHHH----cCCc--EEEECCCccHHHHHHHHhCCCCCcEEE-ECCCc
Confidence 445566666777776 577 58999999988777765 4543 1111112233222222 124689775 77665
Q ss_pred ChHhHHHHHHhccCCCeEEEEe
Q 047386 206 PSVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 206 ~~~fld~A~~~l~~gGlL~vTa 227 (581)
+....++.+++++|-+++-.
T Consensus 223 --~~~~~~~~~l~~~G~~v~~g 242 (324)
T cd08291 223 --GLTGQILLAMPYGSTLYVYG 242 (324)
T ss_pred --HHHHHHHHhhCCCCEEEEEE
Confidence 33455788999999876643
No 311
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=67.89 E-value=23 Score=37.70 Aligned_cols=91 Identities=25% Similarity=0.286 Sum_probs=56.7
Q ss_pred EEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhC--CCcccEEeeCCC
Q 047386 126 LEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTH--PKEFDVVDLDPY 203 (581)
Q Consensus 126 LDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~--~~~fDvIdLDPy 203 (581)
.=+=+|.|.++|.+|+.. |+ .+++.-.+++-.+.+ +..|-+ .-+.....|...-+... ++.+|+| +|+-
T Consensus 149 ~gaaGgVG~~aiQlAk~~-G~-~~v~~~~s~~k~~~~----~~lGAd--~vi~y~~~~~~~~v~~~t~g~gvDvv-~D~v 219 (326)
T COG0604 149 HGAAGGVGSAAIQLAKAL-GA-TVVAVVSSSEKLELL----KELGAD--HVINYREEDFVEQVRELTGGKGVDVV-LDTV 219 (326)
T ss_pred ecCCchHHHHHHHHHHHc-CC-cEEEEecCHHHHHHH----HhcCCC--EEEcCCcccHHHHHHHHcCCCCceEE-EECC
Confidence 344677888999999974 66 566666666554433 334432 12223344433333322 3468987 7888
Q ss_pred CCChHhHHHHHHhccCCCeEEEEe
Q 047386 204 GSPSVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 204 Gs~~~fld~A~~~l~~gGlL~vTa 227 (581)
|. ..+..++++|+++|.|++..
T Consensus 220 G~--~~~~~~l~~l~~~G~lv~ig 241 (326)
T COG0604 220 GG--DTFAASLAALAPGGRLVSIG 241 (326)
T ss_pred CH--HHHHHHHHHhccCCEEEEEe
Confidence 75 66777899999999887753
No 312
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=67.57 E-value=55 Score=33.81 Aligned_cols=97 Identities=20% Similarity=0.271 Sum_probs=58.3
Q ss_pred CCCeEEEec-CcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhh--CCCcccE
Q 047386 121 KPPRVLEAL-SASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLT--HPKEFDV 197 (581)
Q Consensus 121 ~~~~VLDaf-sgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~--~~~~fDv 197 (581)
.+.+||-.- ++.|...+.+|+. .|+..|++.+.++...+.+++ ++.. ..+.....+....+.. ....+|+
T Consensus 167 ~~~~VlI~g~g~vg~~~iqlak~-~g~~~v~~~~~~~~~~~~~~~----~g~~--~vi~~~~~~~~~~i~~~~~~~~~d~ 239 (347)
T cd05278 167 PGSTVAVIGAGPVGLCAVAGARL-LGAARIIAVDSNPERLDLAKE----AGAT--DIINPKNGDIVEQILELTGGRGVDC 239 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH-cCCCEEEEEeCCHHHHHHHHH----hCCc--EEEcCCcchHHHHHHHHcCCCCCcE
Confidence 355677632 2245666778886 476678888888877776654 3432 1122222233232322 1246897
Q ss_pred EeeCCCCCChHhHHHHHHhccCCCeEEEE
Q 047386 198 VDLDPYGSPSVFLDSAIQSVADGGMLMCT 226 (581)
Q Consensus 198 IdLDPyGs~~~fld~A~~~l~~gGlL~vT 226 (581)
|+ |..|. ...+..++++|+.+|.++..
T Consensus 240 vl-d~~g~-~~~~~~~~~~l~~~G~~v~~ 266 (347)
T cd05278 240 VI-EAVGF-EETFEQAVKVVRPGGTIANV 266 (347)
T ss_pred EE-EccCC-HHHHHHHHHHhhcCCEEEEE
Confidence 75 76543 25788889999999987654
No 313
>PRK00420 hypothetical protein; Validated
Probab=67.13 E-value=6.6 Score=35.98 Aligned_cols=33 Identities=18% Similarity=0.291 Sum_probs=20.6
Q ss_pred EEEEcCCCCceeEeeccccccCCCCcccccCCCCCCCCCcCCCCCCcccccc
Q 047386 312 YVYQCIGCDSFHLQPVGRTASNKNNSVRYLPGFGPVVPQLCSDCGKKFNMGG 363 (581)
Q Consensus 312 ~v~~C~~C~~~~~q~lgr~~~~~~~~~~~~~~~~~~~~~~C~~Cg~~~~~~G 363 (581)
+-.+|+.||+ ||-+.. .....||.||..+.+..
T Consensus 22 l~~~CP~Cg~----pLf~lk---------------~g~~~Cp~Cg~~~~v~~ 54 (112)
T PRK00420 22 LSKHCPVCGL----PLFELK---------------DGEVVCPVHGKVYIVKS 54 (112)
T ss_pred ccCCCCCCCC----cceecC---------------CCceECCCCCCeeeecc
Confidence 3479999996 333311 11246999998776653
No 314
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=66.75 E-value=11 Score=39.28 Aligned_cols=48 Identities=29% Similarity=0.440 Sum_probs=37.6
Q ss_pred CCCCCeEEEecCcccHHHHHHhhhc-CCccEEEEEeCCHHHHHHHHHHHH
Q 047386 119 QLKPPRVLEALSASGLRALRYAREV-EGIGQVVALDNDKASVEACRRNIK 167 (581)
Q Consensus 119 ~~~~~~VLDafsgSG~rgIr~a~E~-~Ga~~V~anD~s~~Ave~i~~Ni~ 167 (581)
.|.+.+|||.-||+|. |+-++.++ +....++++|.|+.+.++.+.=++
T Consensus 31 ~f~P~~vLD~GsGpGt-a~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~ 79 (274)
T PF09243_consen 31 DFRPRSVLDFGSGPGT-ALWAAREVWPSLKEYTCVDRSPEMLELAKRLLR 79 (274)
T ss_pred CCCCceEEEecCChHH-HHHHHHHHhcCceeeeeecCCHHHHHHHHHHHh
Confidence 5678899999999987 55555554 457889999999999998776443
No 315
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=66.53 E-value=29 Score=36.56 Aligned_cols=93 Identities=23% Similarity=0.325 Sum_probs=54.5
Q ss_pred CCCeEEEe-cCcccHHHHHHhhhcCCccEEEEEeC---CHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCccc
Q 047386 121 KPPRVLEA-LSASGLRALRYAREVEGIGQVVALDN---DKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFD 196 (581)
Q Consensus 121 ~~~~VLDa-fsgSG~rgIr~a~E~~Ga~~V~anD~---s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fD 196 (581)
.+.+||=. .++.|..++.+|+. .|+ +|++.|. ++.-.+.+++ .|.+ .+.....|... .. ....||
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~-~G~-~vi~~~~~~~~~~~~~~~~~----~Ga~---~v~~~~~~~~~-~~-~~~~~d 240 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRL-RGF-EVYVLNRRDPPDPKADIVEE----LGAT---YVNSSKTPVAE-VK-LVGEFD 240 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH-cCC-eEEEEecCCCCHHHHHHHHH----cCCE---EecCCccchhh-hh-hcCCCC
Confidence 34455433 34445566667776 477 6999886 6777666543 3432 12111122211 11 124688
Q ss_pred EEeeCCCCCChHhHHHHHHhccCCCeEEEE
Q 047386 197 VVDLDPYGSPSVFLDSAIQSVADGGMLMCT 226 (581)
Q Consensus 197 vIdLDPyGs~~~fld~A~~~l~~gGlL~vT 226 (581)
+| +|.-|++ ..+..+++++++||.+++.
T Consensus 241 ~v-id~~g~~-~~~~~~~~~l~~~G~~v~~ 268 (355)
T cd08230 241 LI-IEATGVP-PLAFEALPALAPNGVVILF 268 (355)
T ss_pred EE-EECcCCH-HHHHHHHHHccCCcEEEEE
Confidence 55 6777754 4778899999999988764
No 316
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=66.39 E-value=73 Score=33.76 Aligned_cols=96 Identities=19% Similarity=0.242 Sum_probs=55.2
Q ss_pred CCeEEEe-cCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEeh--h-HHHHHhhCCCcccE
Q 047386 122 PPRVLEA-LSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLA--D-ARVYMLTHPKEFDV 197 (581)
Q Consensus 122 ~~~VLDa-fsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~--D-A~~~l~~~~~~fDv 197 (581)
+.+||=. -.+.|...+.+|+. .|+..|+++|.++.-.+.+++ .|.+ .-+..... + ...+.......+|+
T Consensus 185 g~~vlV~G~g~vG~~~~~~a~~-~G~~~Vi~~~~~~~~~~~~~~----~ga~--~~i~~~~~~~~~~~~~~~~~~~g~d~ 257 (365)
T cd08277 185 GSTVAVFGLGAVGLSAIMGAKI-AGASRIIGVDINEDKFEKAKE----FGAT--DFINPKDSDKPVSEVIREMTGGGVDY 257 (365)
T ss_pred CCEEEEECCCHHHHHHHHHHHH-cCCCeEEEEeCCHHHHHHHHH----cCCC--cEeccccccchHHHHHHHHhCCCCCE
Confidence 4555543 33444455666775 588889999999888777643 3542 11111111 1 12222111246887
Q ss_pred EeeCCCCCChHhHHHHHHhccCC-CeEEEE
Q 047386 198 VDLDPYGSPSVFLDSAIQSVADG-GMLMCT 226 (581)
Q Consensus 198 IdLDPyGs~~~fld~A~~~l~~g-GlL~vT 226 (581)
|+ |.-|. ...++.++++++++ |.+.+.
T Consensus 258 vi-d~~g~-~~~~~~~~~~l~~~~G~~v~~ 285 (365)
T cd08277 258 SF-ECTGN-ADLMNEALESTKLGWGVSVVV 285 (365)
T ss_pred EE-ECCCC-hHHHHHHHHhcccCCCEEEEE
Confidence 74 66564 36778889999875 777664
No 317
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=66.05 E-value=44 Score=35.80 Aligned_cols=99 Identities=25% Similarity=0.264 Sum_probs=60.7
Q ss_pred CCCeEEEecCcc-cHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehh-HHHHHhh-C-CCccc
Q 047386 121 KPPRVLEALSAS-GLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLAD-ARVYMLT-H-PKEFD 196 (581)
Q Consensus 121 ~~~~VLDafsgS-G~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~D-A~~~l~~-~-~~~fD 196 (581)
.+.+||..=+|+ |...+++|+. .|+..|+++|.++.-.+.+++.. +.. .+.....| ...-+.. . ...+|
T Consensus 184 ~g~~VlV~g~G~vG~~~~~la~~-~g~~~vi~~~~~~~~~~~~~~~~---~~~---vi~~~~~~~~~~~l~~~~~~~~~D 256 (386)
T cd08283 184 PGDTVAVWGCGPVGLFAARSAKL-LGAERVIAIDRVPERLEMARSHL---GAE---TINFEEVDDVVEALRELTGGRGPD 256 (386)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH-cCCCEEEEEcCCHHHHHHHHHcC---CcE---EEcCCcchHHHHHHHHHcCCCCCC
Confidence 456788874444 5677778886 47777999999998888777642 211 12222222 2222222 1 23588
Q ss_pred EEeeCCCCC--------------------ChHhHHHHHHhccCCCeEEEEe
Q 047386 197 VVDLDPYGS--------------------PSVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 197 vIdLDPyGs--------------------~~~fld~A~~~l~~gGlL~vTa 227 (581)
+| +|--|. +...++.++++++++|.+++..
T Consensus 257 ~v-ld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 257 VC-IDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred EE-EECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 76 443221 2356788899999999887753
No 318
>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1MKM_A 3MQ0_A 3R4K_A 2G7U_C 2O0Y_C 2XRO_F 2XRN_B 2IA2_D.
Probab=65.98 E-value=5.8 Score=30.57 Aligned_cols=47 Identities=19% Similarity=0.355 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhhCCCCCceeeHHHHhhhcCCCCCCHHHHHHHHHHCCceE
Q 047386 394 DRISAVLTTISEELPDVPLFLSLHNLCSTLKCTSPSAVMFRSAVINAGYRV 444 (581)
Q Consensus 394 ~ri~~lL~~~~eEl~~~P~yy~l~~l~~~lk~~~P~~~~~~~aL~~~GY~a 444 (581)
.|...+|+.+.+.- .| .++.+|+..++++.+....++..|.+.||=.
T Consensus 3 ~ral~iL~~l~~~~--~~--~t~~eia~~~gl~~stv~r~L~tL~~~g~v~ 49 (52)
T PF09339_consen 3 ERALRILEALAESG--GP--LTLSEIARALGLPKSTVHRLLQTLVEEGYVE 49 (52)
T ss_dssp HHHHHHHHCHHCTB--SC--EEHHHHHHHHTS-HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHcCC--CC--CCHHHHHHHHCcCHHHHHHHHHHHHHCcCee
Confidence 46778888887653 33 5999999999999999999999999999953
No 319
>COG1743 Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair]
Probab=65.92 E-value=5.7 Score=46.97 Aligned_cols=47 Identities=19% Similarity=0.340 Sum_probs=40.7
Q ss_pred CCCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHh
Q 047386 120 LKPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFN 169 (581)
Q Consensus 120 ~~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N 169 (581)
+.+..+||.|+|-|.+.+++++- | -.|+|+|.||.|+-.++.-++.-
T Consensus 89 ~~~~~~lDPfAG~GSIPlEAlRL--G-~~v~AvelnPvAylfLKavlEyP 135 (875)
T COG1743 89 FEGPKLLDPFAGGGSIPLEALRL--G-LEVVAVELNPVAYLFLKAVLEYP 135 (875)
T ss_pred ccCCcccccccCCCccchHHHhc--C-ceeEEEecccHHHHHHHHHHhcc
Confidence 45678999999999999999984 6 57999999999999888877754
No 320
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=65.91 E-value=25 Score=37.03 Aligned_cols=88 Identities=8% Similarity=-0.003 Sum_probs=53.2
Q ss_pred CCeEEEecCcccHHH---HHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEE
Q 047386 122 PPRVLEALSASGLRA---LRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVV 198 (581)
Q Consensus 122 ~~~VLDafsgSG~rg---Ir~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvI 198 (581)
+.+||=. |.|..| +.+|+.+.|+.+|++.|.++.-.+.+++ .+. .... + .+.. ...||+|
T Consensus 164 g~~VlV~--G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~-----~~~~--~--~~~~--~~g~d~v 226 (341)
T cd08237 164 RNVIGVW--GDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADE-----TYLI--D--DIPE--DLAVDHA 226 (341)
T ss_pred CCEEEEE--CCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCc-----eeeh--h--hhhh--ccCCcEE
Confidence 5566632 345555 4556643466789999999988777754 221 1111 1 1111 1248877
Q ss_pred eeCCCCC--ChHhHHHHHHhccCCCeEEEEe
Q 047386 199 DLDPYGS--PSVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 199 dLDPyGs--~~~fld~A~~~l~~gGlL~vTa 227 (581)
+ |--|. ...-++.+++++++||.+.+..
T Consensus 227 i-D~~G~~~~~~~~~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 227 F-ECVGGRGSQSAINQIIDYIRPQGTIGLMG 256 (341)
T ss_pred E-ECCCCCccHHHHHHHHHhCcCCcEEEEEe
Confidence 4 76563 2346778999999999988753
No 321
>PF03484 B5: tRNA synthetase B5 domain; InterPro: IPR005147 Domain B5 is found in phenylalanine-tRNA synthetase beta subunits. This domain has been shown to bind DNA through a winged helix-turn-helix motif []. Phenylalanine-tRNA synthetase may influence common cellular processes via DNA binding, in addition to its aminoacylation function.; GO: 0000287 magnesium ion binding, 0003723 RNA binding, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation; PDB: 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B 3PCO_D 2CXI_C 1JJC_B 1EIY_B ....
Probab=65.61 E-value=13 Score=30.56 Aligned_cols=58 Identities=21% Similarity=0.237 Sum_probs=41.2
Q ss_pred ceeeHHHHhhhcCCCCCCHHHHHHHHHHCCceEEec-----ccCCCccccC--CCHHHHHHHHHHH
Q 047386 412 LFLSLHNLCSTLKCTSPSAVMFRSAVINAGYRVSGT-----HVNPLGLKTD--APMGVIWDIMRCW 470 (581)
Q Consensus 412 ~yy~l~~l~~~lk~~~P~~~~~~~aL~~~GY~aSrT-----H~~p~~iKTd--AP~~~i~di~r~w 470 (581)
..++++.+.+.++. .-+.+++.+.|..+||.+... -+.+-..|.| -+.+.+-||+|-+
T Consensus 4 i~~~~~~i~~~lG~-~i~~~~i~~~L~~lg~~~~~~~~~~~~v~vP~~R~Di~~~~DliEEiaR~y 68 (70)
T PF03484_consen 4 ITLSLDKINKLLGI-DISPEEIIKILKRLGFKVEKIDGDTLEVTVPSYRFDIEHEEDLIEEIARIY 68 (70)
T ss_dssp EEEEHHHHHHHHTS----HHHHHHHHHHTT-EEEE-CTTEEEEEEETTSTT-SSHHHHHHHHHHHH
T ss_pred EEecHHHHHHHhCC-CCCHHHHHHHHHHCCCEEEECCCCEEEEEcCCCcCCcCcccHHHHHHHHHh
Confidence 45788999999997 456799999999999999997 5666666666 3456677777643
No 322
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=65.43 E-value=13 Score=42.56 Aligned_cols=97 Identities=16% Similarity=0.243 Sum_probs=70.5
Q ss_pred eEEEecCcccHH---HHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEe-
Q 047386 124 RVLEALSASGLR---ALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVD- 199 (581)
Q Consensus 124 ~VLDafsgSG~r---gIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvId- 199 (581)
.|+=+-||-|-+ ++++|.+..---++++++.||.|+-.++. ...-.-+ ++|+++..|-+.+-.- .++.|+|+
T Consensus 370 VimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~--~~Vtii~~DMR~w~ap-~eq~DI~VS 445 (649)
T KOG0822|consen 370 VIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWD--NRVTIISSDMRKWNAP-REQADIIVS 445 (649)
T ss_pred EEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhhc--CeeEEEeccccccCCc-hhhccchHH
Confidence 466666777754 57777765333469999999999988765 5555655 6899999998877631 26789985
Q ss_pred --eCCCCCC---hHhHHHHHHhccCCCeEE
Q 047386 200 --LDPYGSP---SVFLDSAIQSVADGGMLM 224 (581)
Q Consensus 200 --LDPyGs~---~~fld~A~~~l~~gGlL~ 224 (581)
|-.||.. -+=||.|-+.|++.|+-+
T Consensus 446 ELLGSFGDNELSPECLDG~q~fLkpdgIsI 475 (649)
T KOG0822|consen 446 ELLGSFGDNELSPECLDGAQKFLKPDGISI 475 (649)
T ss_pred HhhccccCccCCHHHHHHHHhhcCCCceEc
Confidence 5557652 267999999999997643
No 323
>PRK07102 short chain dehydrogenase; Provisional
Probab=65.25 E-value=1.1e+02 Score=29.95 Aligned_cols=74 Identities=20% Similarity=0.255 Sum_probs=48.7
Q ss_pred eEEEecCcccHHHHHHhhhc--CCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHH------HHhhCCCcc
Q 047386 124 RVLEALSASGLRALRYAREV--EGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARV------YMLTHPKEF 195 (581)
Q Consensus 124 ~VLDafsgSG~rgIr~a~E~--~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~------~l~~~~~~f 195 (581)
+|| ...|||..|...++++ .|. .|++.|.++...+.+.+++..++- .++.++..|... ++......+
T Consensus 3 ~vl-ItGas~giG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 77 (243)
T PRK07102 3 KIL-IIGATSDIARACARRYAAAGA-RLYLAARDVERLERLADDLRARGA---VAVSTHELDILDTASHAAFLDSLPALP 77 (243)
T ss_pred EEE-EEcCCcHHHHHHHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhcC---CeEEEEecCCCChHHHHHHHHHHhhcC
Confidence 344 6778898888877654 464 699999999887766666655432 356777777543 232222357
Q ss_pred cEEeeCC
Q 047386 196 DVVDLDP 202 (581)
Q Consensus 196 DvIdLDP 202 (581)
|+|+.-.
T Consensus 78 d~vv~~a 84 (243)
T PRK07102 78 DIVLIAV 84 (243)
T ss_pred CEEEECC
Confidence 9988644
No 324
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=65.24 E-value=34 Score=36.03 Aligned_cols=96 Identities=19% Similarity=0.214 Sum_probs=57.9
Q ss_pred CCeEEEe-cCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEeh---hHHHHHhhC--CCcc
Q 047386 122 PPRVLEA-LSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLA---DARVYMLTH--PKEF 195 (581)
Q Consensus 122 ~~~VLDa-fsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~---DA~~~l~~~--~~~f 195 (581)
+.+||=. -++.|...+.+|+. .|+ .|++.|.+++-.+.+++ .|.+ .-+..... |....+... ...+
T Consensus 167 g~~VlV~G~G~vG~~a~~~a~~-~G~-~vi~~~~~~~~~~~~~~----~Ga~--~~i~~~~~~~~~~~~~~~~~t~~~g~ 238 (349)
T TIGR03201 167 GDLVIVIGAGGVGGYMVQTAKA-MGA-AVVAIDIDPEKLEMMKG----FGAD--LTLNPKDKSAREVKKLIKAFAKARGL 238 (349)
T ss_pred CCEEEEECCCHHHHHHHHHHHH-cCC-eEEEEcCCHHHHHHHHH----hCCc--eEecCccccHHHHHHHHHhhcccCCC
Confidence 4444432 25557777788886 477 59999999987776643 3442 11111121 333333221 2346
Q ss_pred cE---EeeCCCCCChHhHHHHHHhccCCCeEEEE
Q 047386 196 DV---VDLDPYGSPSVFLDSAIQSVADGGMLMCT 226 (581)
Q Consensus 196 Dv---IdLDPyGs~~~fld~A~~~l~~gGlL~vT 226 (581)
|. +.+|.-|.+ ..+..+++++++||.+++-
T Consensus 239 d~~~d~v~d~~g~~-~~~~~~~~~l~~~G~iv~~ 271 (349)
T TIGR03201 239 RSTGWKIFECSGSK-PGQESALSLLSHGGTLVVV 271 (349)
T ss_pred CCCcCEEEECCCCh-HHHHHHHHHHhcCCeEEEE
Confidence 62 567877753 5777889999999998764
No 325
>PLN02827 Alcohol dehydrogenase-like
Probab=65.21 E-value=28 Score=37.34 Aligned_cols=97 Identities=20% Similarity=0.257 Sum_probs=57.4
Q ss_pred CCCeEEEe-cCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEe--hhHHHHHhh-CCCccc
Q 047386 121 KPPRVLEA-LSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHL--ADARVYMLT-HPKEFD 196 (581)
Q Consensus 121 ~~~~VLDa-fsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~--~DA~~~l~~-~~~~fD 196 (581)
.+.+||=. -++.|...+.+|+. .|+..|++.|.++.-.+.+++ .|.+ .-+.... .|....+.. ....+|
T Consensus 193 ~g~~VlV~G~G~vG~~~iqlak~-~G~~~vi~~~~~~~~~~~a~~----lGa~--~~i~~~~~~~~~~~~v~~~~~~g~d 265 (378)
T PLN02827 193 KGSSVVIFGLGTVGLSVAQGAKL-RGASQIIGVDINPEKAEKAKT----FGVT--DFINPNDLSEPIQQVIKRMTGGGAD 265 (378)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH-cCCCeEEEECCCHHHHHHHHH----cCCc--EEEcccccchHHHHHHHHHhCCCCC
Confidence 35566543 23444555666775 588889999999887666633 4543 1111111 133333322 123689
Q ss_pred EEeeCCCCCChHhHHHHHHhccCC-CeEEEE
Q 047386 197 VVDLDPYGSPSVFLDSAIQSVADG-GMLMCT 226 (581)
Q Consensus 197 vIdLDPyGs~~~fld~A~~~l~~g-GlL~vT 226 (581)
+| +|.-|.+ ..+..+++++++| |.+++-
T Consensus 266 ~v-id~~G~~-~~~~~~l~~l~~g~G~iv~~ 294 (378)
T PLN02827 266 YS-FECVGDT-GIATTALQSCSDGWGLTVTL 294 (378)
T ss_pred EE-EECCCCh-HHHHHHHHhhccCCCEEEEE
Confidence 77 4776654 3567789999998 988764
No 326
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=64.45 E-value=45 Score=38.04 Aligned_cols=101 Identities=22% Similarity=0.290 Sum_probs=63.7
Q ss_pred CCCCeEEEecCc-ccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEE---------------ehh
Q 047386 120 LKPPRVLEALSA-SGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESH---------------LAD 183 (581)
Q Consensus 120 ~~~~~VLDafsg-SG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~---------------~~D 183 (581)
..+.+||=.-+| .|+.+|..|+. -|+ .|++.|.++...+.+++ .|.+ .+.+. ..|
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~-lGA-~V~a~D~~~~rle~aes----lGA~---~v~i~~~e~~~~~~gya~~~s~~ 233 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGS-LGA-IVRAFDTRPEVAEQVES----MGAE---FLELDFEEEGGSGDGYAKVMSEE 233 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHH-CCC-EEEEEeCCHHHHHHHHH----cCCe---EEEeccccccccccchhhhcchh
Confidence 346677766665 58888888887 488 69999999999887765 3432 11111 112
Q ss_pred HH----HHHhhCCCcccEEeeCC--CCCChH-h-HHHHHHhccCCCeEEEEecc
Q 047386 184 AR----VYMLTHPKEFDVVDLDP--YGSPSV-F-LDSAIQSVADGGMLMCTATD 229 (581)
Q Consensus 184 A~----~~l~~~~~~fDvIdLDP--yGs~~~-f-ld~A~~~l~~gGlL~vTaTD 229 (581)
.. ..+...-..+|+|+-=- +|.++| . ...+++.+++||.+..-+.|
T Consensus 234 ~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~~ 287 (509)
T PRK09424 234 FIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAAE 287 (509)
T ss_pred HHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEccC
Confidence 11 11121124689986443 243233 3 58999999999998877654
No 327
>PRK14892 putative transcription elongation factor Elf1; Provisional
Probab=64.45 E-value=11 Score=33.70 Aligned_cols=55 Identities=16% Similarity=0.438 Sum_probs=34.6
Q ss_pred cccceEEEEcCCCCceeEe-eccccccCCCCcccccCCCCCCCCCcCCCCCCcccccccccccCCCCH-----HHHHHHH
Q 047386 307 PLKLSYVYQCIGCDSFHLQ-PVGRTASNKNNSVRYLPGFGPVVPQLCSDCGKKFNMGGPIWSGRIHDQ-----EWVNSIL 380 (581)
Q Consensus 307 ~~k~g~v~~C~~C~~~~~q-~lgr~~~~~~~~~~~~~~~~~~~~~~C~~Cg~~~~~~GPlW~GpLhd~-----~fv~~ml 380 (581)
..++--++.|+.|++..+. ++.|.. .-..|+.||..... ...+|.++ +||+.+.
T Consensus 15 k~klpt~f~CP~Cge~~v~v~~~k~~----------------~h~~C~~CG~y~~~----~V~~l~epIDVY~~wiD~~~ 74 (99)
T PRK14892 15 KPKLPKIFECPRCGKVSISVKIKKNI----------------AIITCGNCGLYTEF----EVPSVYDEVDVYNKFIDLYL 74 (99)
T ss_pred ccCCCcEeECCCCCCeEeeeecCCCc----------------ceEECCCCCCccCE----ECCccccchhhHHHHHHHHH
Confidence 4456778999999965432 333311 12469999976543 46666665 7777775
Q ss_pred H
Q 047386 381 G 381 (581)
Q Consensus 381 ~ 381 (581)
+
T Consensus 75 e 75 (99)
T PRK14892 75 E 75 (99)
T ss_pred h
Confidence 4
No 328
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=64.31 E-value=6.1 Score=30.22 Aligned_cols=12 Identities=25% Similarity=0.700 Sum_probs=9.3
Q ss_pred CCcCCCCCCccc
Q 047386 349 PQLCSDCGKKFN 360 (581)
Q Consensus 349 ~~~C~~Cg~~~~ 360 (581)
+..|++||.++.
T Consensus 19 ~irC~~CG~rIl 30 (44)
T smart00659 19 VVRCRECGYRIL 30 (44)
T ss_pred ceECCCCCceEE
Confidence 357999998764
No 329
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=62.93 E-value=7.7 Score=39.09 Aligned_cols=105 Identities=22% Similarity=0.200 Sum_probs=54.8
Q ss_pred CCCCeEEEecCcccHHHHHHhhhc---CCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHH--Hhh---C
Q 047386 120 LKPPRVLEALSASGLRALRYAREV---EGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVY--MLT---H 191 (581)
Q Consensus 120 ~~~~~VLDafsgSG~rgIr~a~E~---~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~--l~~---~ 191 (581)
+++..|++.-.+-|+=.+-+|+-+ .+-.+|+.+|++....... -++...+. .+|++++||.... +.+ .
T Consensus 31 ~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~--a~e~hp~~--~rI~~i~Gds~d~~~~~~v~~~ 106 (206)
T PF04989_consen 31 LKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRK--AIESHPMS--PRITFIQGDSIDPEIVDQVREL 106 (206)
T ss_dssp H--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG------TTEEEEES-SSSTHHHHTSGSS
T ss_pred hCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchH--HHhhcccc--CceEEEECCCCCHHHHHHHHHh
Confidence 357799999999999999887532 2457899999964432111 11112222 5899999987632 221 1
Q ss_pred --CCcccEEeeCCCCCC---hHhHHHHHHhccCCCeEEEEec
Q 047386 192 --PKEFDVVDLDPYGSP---SVFLDSAIQSVADGGMLMCTAT 228 (581)
Q Consensus 192 --~~~fDvIdLDPyGs~---~~fld~A~~~l~~gGlL~vTaT 228 (581)
.....+|++|---+- ..-|..-..+|++|+++.|+=|
T Consensus 107 ~~~~~~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IVeDt 148 (206)
T PF04989_consen 107 ASPPHPVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIVEDT 148 (206)
T ss_dssp ----SSEEEEESS----SSHHHHHHHHHHT--TT-EEEETSH
T ss_pred hccCCceEEEECCCccHHHHHHHHHHhCccCCCCCEEEEEec
Confidence 124569999984321 1334445568899999999754
No 330
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=62.80 E-value=21 Score=37.32 Aligned_cols=71 Identities=21% Similarity=0.214 Sum_probs=59.4
Q ss_pred EEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhC---CCcccEEeeC
Q 047386 125 VLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTH---PKEFDVVDLD 201 (581)
Q Consensus 125 VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~---~~~fDvIdLD 201 (581)
=|.-+.||=.++-+.++ .-++++++++.|.-..+++.|.. +- .++.+.++|-+..+..+ +++=-+|.+|
T Consensus 92 ~l~~YpGSP~lA~~llR---~qDRl~l~ELHp~D~~~L~~~f~--~d---~~vrv~~~DG~~~l~a~LPP~erRglVLID 163 (279)
T COG2961 92 GLRYYPGSPLLARQLLR---EQDRLVLTELHPSDAPLLRNNFA--GD---RRVRVLRGDGFLALKAHLPPKERRGLVLID 163 (279)
T ss_pred CcccCCCCHHHHHHHcc---hhceeeeeecCccHHHHHHHHhC--CC---cceEEEecCcHHHHhhhCCCCCcceEEEeC
Confidence 38999999888888877 46899999999999999999998 32 57999999999887653 3455899999
Q ss_pred CC
Q 047386 202 PY 203 (581)
Q Consensus 202 Py 203 (581)
|+
T Consensus 164 PP 165 (279)
T COG2961 164 PP 165 (279)
T ss_pred CC
Confidence 94
No 331
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=62.74 E-value=14 Score=37.84 Aligned_cols=48 Identities=13% Similarity=0.158 Sum_probs=39.8
Q ss_pred CCCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhC
Q 047386 120 LKPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNG 170 (581)
Q Consensus 120 ~~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~ 170 (581)
..+..|||.|+|||.-++.+..- -...+.+|+++.-++.+.+=+..+.
T Consensus 221 ~~~diVlDpf~GsGtt~~aa~~~---~r~~ig~e~~~~y~~~~~~r~~~~~ 268 (302)
T COG0863 221 FPGDIVLDPFAGSGTTGIAAKNL---GRRFIGIEINPEYVEVALKRLQEGL 268 (302)
T ss_pred CCCCEEeecCCCCChHHHHHHHc---CCceEEEecCHHHHHHHHHHHHhhc
Confidence 45679999999999999999874 3568889999999998877766543
No 332
>PRK04351 hypothetical protein; Provisional
Probab=62.68 E-value=6.6 Score=37.54 Aligned_cols=38 Identities=24% Similarity=0.578 Sum_probs=24.2
Q ss_pred ceEEEEcCCCCceeEeeccccccCCCCcccccCCCCCCCCCcCCCCCCcccccc
Q 047386 310 LSYVYQCIGCDSFHLQPVGRTASNKNNSVRYLPGFGPVVPQLCSDCGKKFNMGG 363 (581)
Q Consensus 310 ~g~v~~C~~C~~~~~q~lgr~~~~~~~~~~~~~~~~~~~~~~C~~Cg~~~~~~G 363 (581)
.-|+|.|.+||...... |.. + . ..-.|..|++.+...|
T Consensus 109 ~~y~Y~C~~Cg~~~~r~--Rr~--n--~----------~~yrCg~C~g~L~~~~ 146 (149)
T PRK04351 109 KNYLYECQSCGQQYLRK--RRI--N--T----------KRYRCGKCRGKLKLIN 146 (149)
T ss_pred ceEEEECCCCCCEeeee--eec--C--C----------CcEEeCCCCcEeeecc
Confidence 34999999999644321 111 0 1 1236999999987764
No 333
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=62.29 E-value=5.9 Score=31.17 Aligned_cols=34 Identities=18% Similarity=0.398 Sum_probs=21.1
Q ss_pred ceEEEEcCCCCceeEeeccccccCCCCcccccCCCCCCCCCcCCCCCCcccc
Q 047386 310 LSYVYQCIGCDSFHLQPVGRTASNKNNSVRYLPGFGPVVPQLCSDCGKKFNM 361 (581)
Q Consensus 310 ~g~v~~C~~C~~~~~q~lgr~~~~~~~~~~~~~~~~~~~~~~C~~Cg~~~~~ 361 (581)
..++|-|..||.-..+ .. ......|++||+++.+
T Consensus 3 ~~~~Y~C~~Cg~~~~~-------~~-----------~~~~irCp~Cg~rIl~ 36 (49)
T COG1996 3 AMMEYKCARCGREVEL-------DQ-----------ETRGIRCPYCGSRILV 36 (49)
T ss_pred ceEEEEhhhcCCeeeh-------hh-----------ccCceeCCCCCcEEEE
Confidence 4678999999853210 00 0123579999998643
No 334
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=61.93 E-value=49 Score=35.42 Aligned_cols=96 Identities=18% Similarity=0.200 Sum_probs=56.7
Q ss_pred CCeEEE-ecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEeh----hH-HHHHhh-CCCc
Q 047386 122 PPRVLE-ALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLA----DA-RVYMLT-HPKE 194 (581)
Q Consensus 122 ~~~VLD-afsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~----DA-~~~l~~-~~~~ 194 (581)
+.+||= +-++.|...+.+|+. .|+..|++.+.++.-.+++++ .|++ .+-..+. +. ..++.. ..+.
T Consensus 204 g~~VlV~g~g~vG~~ai~lA~~-~G~~~vi~~~~~~~~~~~~~~----~g~~---~~v~~~~~~~~~~~~~v~~~~~g~g 275 (384)
T cd08265 204 GAYVVVYGAGPIGLAAIALAKA-AGASKVIAFEISEERRNLAKE----MGAD---YVFNPTKMRDCLSGEKVMEVTKGWG 275 (384)
T ss_pred CCEEEEECCCHHHHHHHHHHHH-cCCCEEEEEcCCHHHHHHHHH----cCCC---EEEcccccccccHHHHHHHhcCCCC
Confidence 334433 444555555666776 588789999998886555543 3442 1211111 21 122221 1346
Q ss_pred ccEEeeCCCCCChHhHHHHHHhccCCCeEEEE
Q 047386 195 FDVVDLDPYGSPSVFLDSAIQSVADGGMLMCT 226 (581)
Q Consensus 195 fDvIdLDPyGs~~~fld~A~~~l~~gGlL~vT 226 (581)
+|+|+ |..|.+...++.++++|+.+|-+..-
T Consensus 276 vDvvl-d~~g~~~~~~~~~~~~l~~~G~~v~~ 306 (384)
T cd08265 276 ADIQV-EAAGAPPATIPQMEKSIAINGKIVYI 306 (384)
T ss_pred CCEEE-ECCCCcHHHHHHHHHHHHcCCEEEEE
Confidence 89775 88776556778889999999988764
No 335
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=60.40 E-value=11 Score=39.11 Aligned_cols=77 Identities=17% Similarity=0.185 Sum_probs=52.6
Q ss_pred CCeEEEecCcccHHHHHHhhhcCC-ccEEEEEeCCHHHHHHHHHHHHHh-CCCCCCcEEEE-ehhHHHHHhh---CCCcc
Q 047386 122 PPRVLEALSASGLRALRYAREVEG-IGQVVALDNDKASVEACRRNIKFN-GSVACSKVESH-LADARVYMLT---HPKEF 195 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~~G-a~~V~anD~s~~Ave~i~~Ni~~N-~~~~~~~v~v~-~~DA~~~l~~---~~~~f 195 (581)
+.++||. |+|.--|.-+...+- -=+-|.-|+|+.+++.++.|+..| +++ ..++.. +.|-..++.. ..++|
T Consensus 79 ~i~~LDI--GvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~--~~I~lr~qk~~~~if~giig~nE~y 154 (292)
T COG3129 79 NIRILDI--GVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLE--RAIRLRRQKDSDAIFNGIIGKNERY 154 (292)
T ss_pred ceEEEee--ccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchh--hheeEEeccCcccccccccccccee
Confidence 5578887 777777766552110 013678899999999999999999 775 455543 3343333322 14789
Q ss_pred cEEeeCC
Q 047386 196 DVVDLDP 202 (581)
Q Consensus 196 DvIdLDP 202 (581)
|++...|
T Consensus 155 d~tlCNP 161 (292)
T COG3129 155 DATLCNP 161 (292)
T ss_pred eeEecCC
Confidence 9999999
No 336
>PRK08339 short chain dehydrogenase; Provisional
Probab=60.31 E-value=1.4e+02 Score=30.11 Aligned_cols=61 Identities=21% Similarity=0.248 Sum_probs=39.8
Q ss_pred CCCCeEEEecCcccHHHHHHhhhc--CCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHH
Q 047386 120 LKPPRVLEALSASGLRALRYAREV--EGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADAR 185 (581)
Q Consensus 120 ~~~~~VLDafsgSG~rgIr~a~E~--~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~ 185 (581)
+.++++| ...|+|..|...++++ .|+ +|++.|.++...+.+.+.+.... . .++.++..|+.
T Consensus 6 l~~k~~l-ItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~--~~~~~~~~Dv~ 68 (263)
T PRK08339 6 LSGKLAF-TTASSKGIGFGVARVLARAGA-DVILLSRNEENLKKAREKIKSES-N--VDVSYIVADLT 68 (263)
T ss_pred CCCCEEE-EeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhc-C--CceEEEEecCC
Confidence 3455555 5777788888776654 465 59999999888777776665321 1 24566666653
No 337
>TIGR00738 rrf2_super rrf2 family protein (putative transcriptional regulator). This model represents a superfamily of probable transcriptional regulators. One member, RRF2 of Desulfovibrio vulgaris is an apparent regulatory protein experimentally (MEDLINE:97293189). The N-terminal region appears related to the DNA-binding biotin repressor region of the BirA bifunctional according to results after three rounds of PSI-BLAST with a fairly high stringency.
Probab=60.07 E-value=44 Score=30.21 Aligned_cols=58 Identities=14% Similarity=0.081 Sum_probs=46.6
Q ss_pred eeeHHHHhhhcCCCCCCHHHHHHHHHHCCceEEecccCCCccccCCCHHH--HHHHHHHHH
Q 047386 413 FLSLHNLCSTLKCTSPSAVMFRSAVINAGYRVSGTHVNPLGLKTDAPMGV--IWDIMRCWV 471 (581)
Q Consensus 413 yy~l~~l~~~lk~~~P~~~~~~~aL~~~GY~aSrTH~~p~~iKTdAP~~~--i~di~r~w~ 471 (581)
..+..+||..++++.+....++..|..+||=.+ +.-...|++=-.|.+. ++||++.+.
T Consensus 25 ~~s~~eia~~~~i~~~~v~~il~~L~~~gli~~-~~g~~ggy~l~~~~~~itl~~I~~~~e 84 (132)
T TIGR00738 25 PVSVKEIAERQGISRSYLEKILRTLRRAGLVES-VRGPGGGYRLARPPEEITVGDVVRAVE 84 (132)
T ss_pred cCcHHHHHHHHCcCHHHHHHHHHHHHHCCcEEe-ccCCCCCccCCCCHHHCCHHHHHHHHc
Confidence 579999999999999999999999999999655 3233457777666665 678999874
No 338
>PRK07832 short chain dehydrogenase; Provisional
Probab=59.40 E-value=2e+02 Score=28.87 Aligned_cols=40 Identities=13% Similarity=0.109 Sum_probs=27.9
Q ss_pred ecCcccHHHHHHhhhc--CCccEEEEEeCCHHHHHHHHHHHHH
Q 047386 128 ALSASGLRALRYAREV--EGIGQVVALDNDKASVEACRRNIKF 168 (581)
Q Consensus 128 afsgSG~rgIr~a~E~--~Ga~~V~anD~s~~Ave~i~~Ni~~ 168 (581)
+..|||.+|...++++ .|+ .|++.+.+++..+.+...+..
T Consensus 5 ItGas~giG~~la~~la~~G~-~vv~~~r~~~~~~~~~~~~~~ 46 (272)
T PRK07832 5 VTGAASGIGRATALRLAAQGA-ELFLTDRDADGLAQTVADARA 46 (272)
T ss_pred EeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHh
Confidence 4567788887765543 475 488899998887766666554
No 339
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=59.36 E-value=12 Score=27.04 Aligned_cols=10 Identities=30% Similarity=0.743 Sum_probs=8.2
Q ss_pred EEEcCCCCce
Q 047386 313 VYQCIGCDSF 322 (581)
Q Consensus 313 v~~C~~C~~~ 322 (581)
+|.|..||..
T Consensus 2 ~~~C~~CG~i 11 (34)
T cd00729 2 VWVCPVCGYI 11 (34)
T ss_pred eEECCCCCCE
Confidence 5899999964
No 340
>PRK08444 hypothetical protein; Provisional
Probab=59.23 E-value=1.1e+02 Score=33.15 Aligned_cols=119 Identities=14% Similarity=0.182 Sum_probs=72.7
Q ss_pred CcCCCCCCcccc--cccccccCCCCHHHHHHHHHHhhhc--------c-cCCCcHHHHHHHHHHHHhhCCCCCc-eeeHH
Q 047386 350 QLCSDCGKKFNM--GGPIWSGRIHDQEWVNSILGEVKSM--------K-DRYPAYDRISAVLTTISEELPDVPL-FLSLH 417 (581)
Q Consensus 350 ~~C~~Cg~~~~~--~GPlW~GpLhd~~fv~~ml~~~~~~--------~-~~~~t~~ri~~lL~~~~eEl~~~P~-yy~l~ 417 (581)
..|.+|+..-+- ..+ | .|-..+.++.+.+..+.- . ......+.+..++..|++++++.-. -|+..
T Consensus 61 ~~C~FCaf~~~~~~~~~-y--~ls~eeI~~~a~~a~~~G~~ei~iv~G~~p~~~~e~y~e~ir~Ik~~~p~i~i~a~s~~ 137 (353)
T PRK08444 61 DVCKFCAFSAHRKNPNP-Y--TMSHEEILEIVKNSVKRGIKEVHIVSAHNPNYGYEWYLEIFKKIKEAYPNLHVKAMTAA 137 (353)
T ss_pred cCCccCCCccCCCCCcc-c--cCCHHHHHHHHHHHHHCCCCEEEEeccCCCCCCHHHHHHHHHHHHHHCCCceEeeCCHH
Confidence 468899765432 223 5 254455666655433220 0 0111346788999999998765444 47777
Q ss_pred HHhhhcCCCCCCHHHHHHHHHHCCceEEecccCCCc---------cccCCCHHHHHHHHHHHHH
Q 047386 418 NLCSTLKCTSPSAVMFRSAVINAGYRVSGTHVNPLG---------LKTDAPMGVIWDIMRCWVK 472 (581)
Q Consensus 418 ~l~~~lk~~~P~~~~~~~aL~~~GY~aSrTH~~p~~---------iKTdAP~~~i~di~r~w~~ 472 (581)
+|.-.-+..-.++.+.+..|+++|-. |..|-...- --|-.+.+...+|++.+.+
T Consensus 138 Ei~~~a~~~g~~~~e~l~~LkeAGl~-~~~g~~aEi~~~~vr~~I~p~k~~~~~~~~i~~~a~~ 200 (353)
T PRK08444 138 EVDFLSRKFGKSYEEVLEDMLEYGVD-SMPGGGAEIFDEEVRKKICKGKVSSERWLEIHKYWHK 200 (353)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCcc-cCCCCCchhcCHHHHhhhCCCCCCHHHHHHHHHHHHH
Confidence 76555444555689999999999987 444522111 2445677888888887754
No 341
>PRK13130 H/ACA RNA-protein complex component Nop10p; Reviewed
Probab=59.16 E-value=7.9 Score=31.24 Aligned_cols=34 Identities=24% Similarity=0.535 Sum_probs=24.1
Q ss_pred EEEEcCCCCceeEeeccccccCCCCcccccCCCCCCCCCcCCCCCCcccccccccccC
Q 047386 312 YVYQCIGCDSFHLQPVGRTASNKNNSVRYLPGFGPVVPQLCSDCGKKFNMGGPIWSGR 369 (581)
Q Consensus 312 ~v~~C~~C~~~~~q~lgr~~~~~~~~~~~~~~~~~~~~~~C~~Cg~~~~~~GPlW~Gp 369 (581)
-+-.|..||.+.+ ...||.||+....+=|-=-.|
T Consensus 4 ~mr~C~~CgvYTL------------------------k~~CP~CG~~t~~~~P~rfSp 37 (56)
T PRK13130 4 KIRKCPKCGVYTL------------------------KEICPVCGGKTKNPHPPRFSP 37 (56)
T ss_pred cceECCCCCCEEc------------------------cccCcCCCCCCCCCCCCCCCC
Confidence 3557999987654 135999999887777654444
No 342
>PRK11920 rirA iron-responsive transcriptional regulator; Reviewed
Probab=58.45 E-value=30 Score=32.92 Aligned_cols=71 Identities=10% Similarity=0.166 Sum_probs=55.9
Q ss_pred HHHHHHHHHhhCCCCCceeeHHHHhhhcCCCCCCHHHHHHHHHHCCceEEecccCCCccccCCCHHH--HHHHHHHHH
Q 047386 396 ISAVLTTISEELPDVPLFLSLHNLCSTLKCTSPSAVMFRSAVINAGYRVSGTHVNPLGLKTDAPMGV--IWDIMRCWV 471 (581)
Q Consensus 396 i~~lL~~~~eEl~~~P~yy~l~~l~~~lk~~~P~~~~~~~aL~~~GY~aSrTH~~p~~iKTdAP~~~--i~di~r~w~ 471 (581)
++-|+.+...+ +. ..++.+||..++++.+-+.+++..|+++|+=.|.-.. .+|+.-.-|.++ ++||++.-.
T Consensus 11 lr~L~~LA~~~--~~--~~s~~eIA~~~~is~~~L~kIl~~L~~aGlv~S~rG~-~GGy~La~~p~eItl~dIi~ave 83 (153)
T PRK11920 11 IRMLMYCAAND--GK--LSRIPEIARAYGVSELFLFKILQPLVEAGLVETVRGR-NGGVRLGRPAADISLFDVVRVTE 83 (153)
T ss_pred HHHHHHHHhCC--CC--cCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeecCC-CCCeeecCCHHHCcHHHHHHHHc
Confidence 34455554432 22 3599999999999999999999999999998877753 678999888887 689998874
No 343
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=57.67 E-value=59 Score=33.85 Aligned_cols=96 Identities=19% Similarity=0.206 Sum_probs=58.3
Q ss_pred CCCeEEEec--CcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEeh-hHHHHHhh-CCCccc
Q 047386 121 KPPRVLEAL--SASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLA-DARVYMLT-HPKEFD 196 (581)
Q Consensus 121 ~~~~VLDaf--sgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~-DA~~~l~~-~~~~fD 196 (581)
.+.+||=.- ++.|...+.+|+. .|+ +|++.+.++.-.+.+++. .|.+ .-+..... |....+.. ....+|
T Consensus 151 ~g~~VlI~Ga~G~vG~~aiqlAk~-~G~-~Vi~~~~~~~~~~~~~~~---lGa~--~vi~~~~~~~~~~~i~~~~~~gvd 223 (338)
T cd08295 151 KGETVFVSAASGAVGQLVGQLAKL-KGC-YVVGSAGSDEKVDLLKNK---LGFD--DAFNYKEEPDLDAALKRYFPNGID 223 (338)
T ss_pred CCCEEEEecCccHHHHHHHHHHHH-cCC-EEEEEeCCHHHHHHHHHh---cCCc--eeEEcCCcccHHHHHHHhCCCCcE
Confidence 345555322 4566666778886 587 488888888877776543 2442 11111111 33332322 234689
Q ss_pred EEeeCCCCCChHhHHHHHHhccCCCeEEEE
Q 047386 197 VVDLDPYGSPSVFLDSAIQSVADGGMLMCT 226 (581)
Q Consensus 197 vIdLDPyGs~~~fld~A~~~l~~gGlL~vT 226 (581)
+|+ |..|. ..+..++++|+++|.++.-
T Consensus 224 ~v~-d~~g~--~~~~~~~~~l~~~G~iv~~ 250 (338)
T cd08295 224 IYF-DNVGG--KMLDAVLLNMNLHGRIAAC 250 (338)
T ss_pred EEE-ECCCH--HHHHHHHHHhccCcEEEEe
Confidence 875 88775 5677789999999998764
No 344
>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]
Probab=57.62 E-value=12 Score=32.87 Aligned_cols=48 Identities=25% Similarity=0.418 Sum_probs=28.6
Q ss_pred hccccccceEEEEcCCCCceeEeeccccccCCCCcccccCCCCCCCCCcCCCCCCcccccccccccCC
Q 047386 303 MKSTPLKLSYVYQCIGCDSFHLQPVGRTASNKNNSVRYLPGFGPVVPQLCSDCGKKFNMGGPIWSGRI 370 (581)
Q Consensus 303 ~k~~~~k~g~v~~C~~C~~~~~q~lgr~~~~~~~~~~~~~~~~~~~~~~C~~Cg~~~~~~GPlW~GpL 370 (581)
+++...++=-.|.|+.|+...+. |.. .| --.|..||..+ +|+-|.--.
T Consensus 25 v~~ie~~~~~~~~Cp~C~~~~Vk---R~a------------~G---IW~C~kCg~~f--AGgay~P~t 72 (89)
T COG1997 25 VKEIEAQQRAKHVCPFCGRTTVK---RIA------------TG---IWKCRKCGAKF--AGGAYTPVT 72 (89)
T ss_pred HHHHHHHHhcCCcCCCCCCccee---eec------------cC---eEEcCCCCCee--ccccccccc
Confidence 33333344456789999864322 211 11 14699999776 788887643
No 345
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=57.31 E-value=5 Score=27.07 Aligned_cols=10 Identities=40% Similarity=1.348 Sum_probs=7.9
Q ss_pred CcCCCCCCcc
Q 047386 350 QLCSDCGKKF 359 (581)
Q Consensus 350 ~~C~~Cg~~~ 359 (581)
..|++||.++
T Consensus 17 ~fC~~CG~~L 26 (26)
T PF13248_consen 17 KFCPNCGAKL 26 (26)
T ss_pred ccChhhCCCC
Confidence 4699999764
No 346
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=56.81 E-value=7.9 Score=26.41 Aligned_cols=11 Identities=36% Similarity=1.198 Sum_probs=8.6
Q ss_pred CCcCCCCCCcc
Q 047386 349 PQLCSDCGKKF 359 (581)
Q Consensus 349 ~~~C~~Cg~~~ 359 (581)
...|++||..+
T Consensus 14 ~~~Cp~CG~~F 24 (26)
T PF10571_consen 14 AKFCPHCGYDF 24 (26)
T ss_pred cCcCCCCCCCC
Confidence 35799999766
No 347
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=56.69 E-value=1.3e+02 Score=32.43 Aligned_cols=120 Identities=11% Similarity=0.083 Sum_probs=75.2
Q ss_pred CCeEEEecCcccHHHHHHhhhcC---CccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhC-----CC
Q 047386 122 PPRVLEALSASGLRALRYAREVE---GIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTH-----PK 193 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~~---Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~-----~~ 193 (581)
+..++|+-||+|----..+..+. .-..-+++|+|..+++...+++..-.++. -.+..+++|-...|... ..
T Consensus 77 ~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~-l~v~~l~gdy~~~l~~l~~~~~~~ 155 (319)
T TIGR03439 77 GSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSH-VRCAGLLGTYDDGLAWLKRPENRS 155 (319)
T ss_pred CCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCC-eEEEEEEecHHHHHhhcccccccC
Confidence 44799999999976333332221 12357999999999999999998444431 23455888877765421 12
Q ss_pred cccEE-eeCC-CCC-----ChHhHHHHHH-hccCCCeEEEEeccchhhcCCCcchhhhhccC
Q 047386 194 EFDVV-DLDP-YGS-----PSVFLDSAIQ-SVADGGMLMCTATDMAVLCGGNGEVCYSKYGS 247 (581)
Q Consensus 194 ~fDvI-dLDP-yGs-----~~~fld~A~~-~l~~gGlL~vTaTD~a~Lcg~~~~~c~rkYG~ 247 (581)
...+| ++-- +|. +..||...-+ .|.+||.|.|-. .+| ..+++-.+.|.+
T Consensus 156 ~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~----D~~-k~~~~l~~AY~d 212 (319)
T TIGR03439 156 RPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGL----DGC-KDPDKVLRAYND 212 (319)
T ss_pred CccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEec----CCC-CCHHHHHHHhcC
Confidence 23333 2321 332 2367776666 799999988843 333 456777778865
No 348
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=56.65 E-value=10 Score=37.31 Aligned_cols=44 Identities=14% Similarity=0.367 Sum_probs=26.4
Q ss_pred eEEEEcCCCCceeEeeccccccCCCCcccccCCCCCCCCCcCCCCCCcccccccccccCCCCHHHHHHH
Q 047386 311 SYVYQCIGCDSFHLQPVGRTASNKNNSVRYLPGFGPVVPQLCSDCGKKFNMGGPIWSGRIHDQEWVNSI 379 (581)
Q Consensus 311 g~v~~C~~C~~~~~q~lgr~~~~~~~~~~~~~~~~~~~~~~C~~Cg~~~~~~GPlW~GpLhd~~fv~~m 379 (581)
...|+|+.|+....+ .-+.. .+-.||.||+.+.. ..|.+.++.+
T Consensus 115 ~~~Y~Cp~C~~rytf---------------~eA~~--~~F~Cp~Cg~~L~~--------~dn~~~~~~l 158 (178)
T PRK06266 115 NMFFFCPNCHIRFTF---------------DEAME--YGFRCPQCGEMLEE--------YDNSELIKEL 158 (178)
T ss_pred CCEEECCCCCcEEeH---------------HHHhh--cCCcCCCCCCCCee--------cccHHHHHHH
Confidence 456789999854332 11110 12369999988764 4666666554
No 349
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=56.03 E-value=8.5 Score=28.12 Aligned_cols=35 Identities=20% Similarity=0.453 Sum_probs=20.8
Q ss_pred EEEcCCCCceeEeeccccccCCCCcccccCCCCCCCCCcCCCCCCccc
Q 047386 313 VYQCIGCDSFHLQPVGRTASNKNNSVRYLPGFGPVVPQLCSDCGKKFN 360 (581)
Q Consensus 313 v~~C~~C~~~~~q~lgr~~~~~~~~~~~~~~~~~~~~~~C~~Cg~~~~ 360 (581)
...|++|+.....+-.+.. .. ...-+|+.|+..+.
T Consensus 2 ~i~CP~C~~~f~v~~~~l~-----------~~--~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 2 IITCPNCQTRFRVPDDKLP-----------AG--GRKVRCPKCGHVFR 36 (37)
T ss_pred EEECCCCCceEEcCHHHcc-----------cC--CcEEECCCCCcEee
Confidence 4689999875544333221 11 12347999998764
No 350
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=55.84 E-value=1.1e+02 Score=31.72 Aligned_cols=95 Identities=26% Similarity=0.354 Sum_probs=55.7
Q ss_pred CCCeEEEecC-cccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEeh-hHHHHHhhCCCcccEE
Q 047386 121 KPPRVLEALS-ASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLA-DARVYMLTHPKEFDVV 198 (581)
Q Consensus 121 ~~~~VLDafs-gSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~-DA~~~l~~~~~~fDvI 198 (581)
.+.+||-.-+ +.|...+++|+. .|+.+|++.+.++.-.+++++ .+.+ .+-..+. +...+. .....||+|
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~-~G~~~v~~~~~s~~~~~~~~~----~g~~---~vi~~~~~~~~~~~-~~~~~vd~v 235 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARR-AGAAEIVATDLADAPLAVARA----MGAD---ETVNLARDPLAAYA-ADKGDFDVV 235 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH-cCCcEEEEECCCHHHHHHHHH----cCCC---EEEcCCchhhhhhh-ccCCCccEE
Confidence 4666766322 225566777776 488789999999887775543 2332 1111111 111222 112358887
Q ss_pred eeCCCCCChHhHHHHHHhccCCCeEEEE
Q 047386 199 DLDPYGSPSVFLDSAIQSVADGGMLMCT 226 (581)
Q Consensus 199 dLDPyGs~~~fld~A~~~l~~gGlL~vT 226 (581)
+|..|. ...+..++++|+++|-++.-
T Consensus 236 -ld~~g~-~~~~~~~~~~L~~~G~~v~~ 261 (339)
T cd08232 236 -FEASGA-PAALASALRVVRPGGTVVQV 261 (339)
T ss_pred -EECCCC-HHHHHHHHHHHhcCCEEEEE
Confidence 667664 24577789999999987653
No 351
>PRK14873 primosome assembly protein PriA; Provisional
Probab=55.61 E-value=19 Score=42.26 Aligned_cols=15 Identities=13% Similarity=0.250 Sum_probs=11.4
Q ss_pred ccceEEEEcCCCCce
Q 047386 308 LKLSYVYQCIGCDSF 322 (581)
Q Consensus 308 ~k~g~v~~C~~C~~~ 322 (581)
.+-|++..|+.|+..
T Consensus 387 ~~Cg~~~~C~~C~~~ 401 (665)
T PRK14873 387 ARCRTPARCRHCTGP 401 (665)
T ss_pred hhCcCeeECCCCCCc
Confidence 457888888888854
No 352
>PF08351 DUF1726: Domain of unknown function (DUF1726); InterPro: IPR013562 This entry represents a protein of unknown function and is found towards the N terminus of putative ATPases (IPR007807 from INTERPRO). ; PDB: 2ZPA_B.
Probab=55.28 E-value=24 Score=30.93 Aligned_cols=59 Identities=19% Similarity=0.246 Sum_probs=36.5
Q ss_pred CCcccEEeeCCC-CCChHhHHHHHHhccCCCeEEEEeccchhhcCCCcchhhhhccCccCC
Q 047386 192 PKEFDVVDLDPY-GSPSVFLDSAIQSVADGGMLMCTATDMAVLCGGNGEVCYSKYGSYPLR 251 (581)
Q Consensus 192 ~~~fDvIdLDPy-Gs~~~fld~A~~~l~~gGlL~vTaTD~a~Lcg~~~~~c~rkYG~~~~k 251 (581)
+..||++++|=+ |....-+-++.-.|+-||+|++-+.+...+. ..+....+++...|..
T Consensus 9 G~e~~~~i~d~~~g~~pnal~a~~gtv~gGGllill~p~~~~w~-~~~d~~~~~~~~~~~~ 68 (92)
T PF08351_consen 9 GQEFDLLIFDAFEGFDPNALAALAGTVRGGGLLILLLPPWESWP-QLPDPFSRRLSVPPYT 68 (92)
T ss_dssp T--BSSEEEE-SS---HHHHHHHHTTB-TT-EEEEEES-GGGTT-TS-BGGGHHCC--SS-
T ss_pred CCccCEEEEEccCCCCHHHHHHHhcceecCeEEEEEcCCHHHhh-hcchHHHhccccCCCC
Confidence 457999999986 4455667777889999999999988877775 4566777777666654
No 353
>PF14353 CpXC: CpXC protein
Probab=55.22 E-value=6.1 Score=36.15 Aligned_cols=18 Identities=33% Similarity=0.863 Sum_probs=13.0
Q ss_pred CCCcCCCCCCcccccccc
Q 047386 348 VPQLCSDCGKKFNMGGPI 365 (581)
Q Consensus 348 ~~~~C~~Cg~~~~~~GPl 365 (581)
..-.||+||..+.+.-|+
T Consensus 37 ~~~~CP~Cg~~~~~~~p~ 54 (128)
T PF14353_consen 37 FSFTCPSCGHKFRLEYPL 54 (128)
T ss_pred CEEECCCCCCceecCCCE
Confidence 345799999888776663
No 354
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=55.04 E-value=12 Score=36.14 Aligned_cols=32 Identities=22% Similarity=0.441 Sum_probs=22.3
Q ss_pred cEEeeCC-CCC--C--------------------hHhHHHHHHhccCCCeEEEEe
Q 047386 196 DVVDLDP-YGS--P--------------------SVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 196 DvIdLDP-yGs--~--------------------~~fld~A~~~l~~gGlL~vTa 227 (581)
|+|+.|| |+. . ..++..+.+.|++||.+++.+
T Consensus 2 dliitDPPY~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~rvLk~~g~~~i~~ 56 (231)
T PF01555_consen 2 DLIITDPPYNIGKDYNNYFDYGDNKNHEEYLEWMEEWLKECYRVLKPGGSIFIFI 56 (231)
T ss_dssp EEEEE---TSSSCS-----CSCHCCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CEEEECCCCCCCCCcchhhhccCCCCHHHHHHHHHHHHHHHHhhcCCCeeEEEEe
Confidence 8999998 643 3 133455778999999999986
No 355
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=54.99 E-value=71 Score=33.38 Aligned_cols=95 Identities=23% Similarity=0.302 Sum_probs=56.3
Q ss_pred CCeEEEe-cCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhh--CCCcccEE
Q 047386 122 PPRVLEA-LSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLT--HPKEFDVV 198 (581)
Q Consensus 122 ~~~VLDa-fsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~--~~~~fDvI 198 (581)
+.+||=. -++.|...+.+|+. .|+..|++.|.++.-.+.+++ .|.+ .-+.....|....+.. ....+|+|
T Consensus 167 g~~vlI~g~g~iG~~~~~lak~-~G~~~v~~~~~~~~~~~~~~~----~g~~--~~v~~~~~~~~~~i~~~~~~~~~d~v 239 (351)
T cd08285 167 GDTVAVFGIGPVGLMAVAGARL-RGAGRIIAVGSRPNRVELAKE----YGAT--DIVDYKNGDVVEQILKLTGGKGVDAV 239 (351)
T ss_pred CCEEEEECCCHHHHHHHHHHHH-cCCCeEEEEeCCHHHHHHHHH----cCCc--eEecCCCCCHHHHHHHHhCCCCCcEE
Confidence 4444443 34455566777776 588889999999887766653 3442 1111112222222211 23468966
Q ss_pred eeCCCCCChHhHHHHHHhccCCCeEEE
Q 047386 199 DLDPYGSPSVFLDSAIQSVADGGMLMC 225 (581)
Q Consensus 199 dLDPyGs~~~fld~A~~~l~~gGlL~v 225 (581)
+|.-|.+ ..+..++++|+.+|.++.
T Consensus 240 -ld~~g~~-~~~~~~~~~l~~~G~~v~ 264 (351)
T cd08285 240 -IIAGGGQ-DTFEQALKVLKPGGTISN 264 (351)
T ss_pred -EECCCCH-HHHHHHHHHhhcCCEEEE
Confidence 5665543 567888999999998765
No 356
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=54.95 E-value=11 Score=40.52 Aligned_cols=71 Identities=14% Similarity=0.090 Sum_probs=52.7
Q ss_pred cccHHHHHHhhhcCC-ccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHH--Hhh---C-CCcccEEeeCCC
Q 047386 131 ASGLRALRYAREVEG-IGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVY--MLT---H-PKEFDVVDLDPY 203 (581)
Q Consensus 131 gSG~rgIr~a~E~~G-a~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~--l~~---~-~~~fDvIdLDPy 203 (581)
|||+-.|+++...+- --.-++.|++...++..+.|+..|+++ +.+.+++..+... |.. . ..-||++...|+
T Consensus 110 gtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~ls--s~ikvV~~~~~ktll~d~~~~~~e~~ydFcMcNPP 187 (419)
T KOG2912|consen 110 GTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLS--SLIKVVKVEPQKTLLMDALKEESEIIYDFCMCNPP 187 (419)
T ss_pred cCchhhhHHhhhchhccceeeeeeccccccchhhccccccccc--cceeeEEecchhhcchhhhccCccceeeEEecCCc
Confidence 899999999873210 124688999999999999999999997 6777777755432 221 1 245999999993
No 357
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=54.65 E-value=8 Score=40.75 Aligned_cols=40 Identities=20% Similarity=0.128 Sum_probs=35.9
Q ss_pred CCCCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHH
Q 047386 119 QLKPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVE 160 (581)
Q Consensus 119 ~~~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave 160 (581)
.+.+.+|||+-||+|+-+|.+... |+..|++.|.|...++
T Consensus 114 ~~~~k~vLELgCg~~Lp~i~~~~~--~~~~~~fqD~na~vl~ 153 (282)
T KOG2920|consen 114 SFSGKRVLELGCGAALPGIFAFVK--GAVSVHFQDFNAEVLR 153 (282)
T ss_pred EecCceeEecCCcccccchhhhhh--ccceeeeEecchhhee
Confidence 467889999999999999999985 8889999999988875
No 358
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=54.36 E-value=62 Score=35.31 Aligned_cols=95 Identities=19% Similarity=0.298 Sum_probs=65.1
Q ss_pred eEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEeh-hHHHHHhhC-CCcccEEeeC
Q 047386 124 RVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLA-DARVYMLTH-PKEFDVVDLD 201 (581)
Q Consensus 124 ~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~-DA~~~l~~~-~~~fDvIdLD 201 (581)
.+.=.+.|.|+=+|.-|+- .|+.+|+++|++++-.+++++ .|.. +-+..... |+-..+... ..-.|++ +|
T Consensus 189 vaV~GlGgVGlaaI~gA~~-agA~~IiAvD~~~~Kl~~A~~----fGAT--~~vn~~~~~~vv~~i~~~T~gG~d~~-~e 260 (366)
T COG1062 189 VAVFGLGGVGLAAIQGAKA-AGAGRIIAVDINPEKLELAKK----FGAT--HFVNPKEVDDVVEAIVELTDGGADYA-FE 260 (366)
T ss_pred EEEEeccHhHHHHHHHHHH-cCCceEEEEeCCHHHHHHHHh----cCCc--eeecchhhhhHHHHHHHhcCCCCCEE-EE
Confidence 5666778888888888885 699999999999999888753 4543 22222222 455554432 2256766 55
Q ss_pred CCCCChHhHHHHHHhccCCCeEEEEe
Q 047386 202 PYGSPSVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 202 PyGs~~~fld~A~~~l~~gGlL~vTa 227 (581)
--|.. .-+++|+.++..+|-..+..
T Consensus 261 ~~G~~-~~~~~al~~~~~~G~~v~iG 285 (366)
T COG1062 261 CVGNV-EVMRQALEATHRGGTSVIIG 285 (366)
T ss_pred ccCCH-HHHHHHHHHHhcCCeEEEEe
Confidence 55653 58889999999999887763
No 359
>PHA02518 ParA-like protein; Provisional
Probab=54.10 E-value=43 Score=32.14 Aligned_cols=77 Identities=16% Similarity=0.136 Sum_probs=39.8
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEE--ehhHHHHHhhCCCcccEEeeCCCCCChHhHHHHHHhccCCC
Q 047386 144 EGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESH--LADARVYMLTHPKEFDVVDLDPYGSPSVFLDSAIQSVADGG 221 (581)
Q Consensus 144 ~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~--~~DA~~~l~~~~~~fDvIdLDPyGs~~~fld~A~~~l~~gG 221 (581)
.| .+|.++|.|+..--.--......+.. .+... ..+....+......||+|++|-+++...+...++.. -+=
T Consensus 28 ~g-~~vlliD~D~q~~~~~~~~~~~~~~~---~i~~~~~~~~~~~~l~~~~~~~d~viiD~p~~~~~~~~~~l~~--aD~ 101 (211)
T PHA02518 28 DG-HKVLLVDLDPQGSSTDWAEAREEGEP---LIPVVRMGKSIRADLPKVASGYDYVVVDGAPQDSELARAALRI--ADM 101 (211)
T ss_pred CC-CeEEEEeCCCCCChHHHHHhcccCCC---CCchhhccHHHHHHHHHHhccCCEEEEeCCCCccHHHHHHHHH--CCE
Confidence 35 67999999987522211111111110 11111 122233333334679999999766666777777663 223
Q ss_pred eEEEE
Q 047386 222 MLMCT 226 (581)
Q Consensus 222 lL~vT 226 (581)
+|.++
T Consensus 102 viip~ 106 (211)
T PHA02518 102 VLIPV 106 (211)
T ss_pred EEEEe
Confidence 44444
No 360
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=54.10 E-value=75 Score=33.81 Aligned_cols=96 Identities=18% Similarity=0.236 Sum_probs=55.5
Q ss_pred CCeEEE-ecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEe--hhHHHHH-hhCCCcccE
Q 047386 122 PPRVLE-ALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHL--ADARVYM-LTHPKEFDV 197 (581)
Q Consensus 122 ~~~VLD-afsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~--~DA~~~l-~~~~~~fDv 197 (581)
+.+||= .-++.|..++.+|+. .|+.+|++.|.++.-.+.+++ .|.+ .-+.... .+....+ ......+|+
T Consensus 186 g~~VlV~G~G~iG~~a~q~Ak~-~G~~~Vi~~~~~~~~~~~a~~----~Ga~--~~i~~~~~~~~~~~~v~~~~~~g~d~ 258 (368)
T TIGR02818 186 GDTVAVFGLGGIGLSVIQGARM-AKASRIIAIDINPAKFELAKK----LGAT--DCVNPNDYDKPIQEVIVEITDGGVDY 258 (368)
T ss_pred CCEEEEECCCHHHHHHHHHHHH-cCCCeEEEEcCCHHHHHHHHH----hCCC--eEEcccccchhHHHHHHHHhCCCCCE
Confidence 444443 334455566777776 588789999999998777754 4543 1111111 1222222 111236887
Q ss_pred EeeCCCCCChHhHHHHHHhccCC-CeEEEE
Q 047386 198 VDLDPYGSPSVFLDSAIQSVADG-GMLMCT 226 (581)
Q Consensus 198 IdLDPyGs~~~fld~A~~~l~~g-GlL~vT 226 (581)
| +|--|.+ ..+..+++++++| |-+.+-
T Consensus 259 v-id~~G~~-~~~~~~~~~~~~~~G~~v~~ 286 (368)
T TIGR02818 259 S-FECIGNV-NVMRAALECCHKGWGESIII 286 (368)
T ss_pred E-EECCCCH-HHHHHHHHHhhcCCCeEEEE
Confidence 6 4766653 3567789999886 876554
No 361
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=53.79 E-value=1.5e+02 Score=31.87 Aligned_cols=116 Identities=12% Similarity=0.104 Sum_probs=66.2
Q ss_pred CcCCCCCCccccccc-ccccCCCCHHHHHHHHHHhhhcc---------cC-CCcHHHHHHHHHHHHhhCCCCCc-eeeHH
Q 047386 350 QLCSDCGKKFNMGGP-IWSGRIHDQEWVNSILGEVKSMK---------DR-YPAYDRISAVLTTISEELPDVPL-FLSLH 417 (581)
Q Consensus 350 ~~C~~Cg~~~~~~GP-lW~GpLhd~~fv~~ml~~~~~~~---------~~-~~t~~ri~~lL~~~~eEl~~~P~-yy~l~ 417 (581)
..|.+|+..-....| .|. + +.+-|.+.+..+.... .. ....+++..++..|++++++... .++..
T Consensus 60 ~~C~FCa~~~~~~~~~~y~--l-~~eeI~~~a~~~~~~G~~~v~l~~G~~p~~~~~~~~e~i~~Ik~~~p~i~i~~~~~~ 136 (351)
T TIGR03700 60 NGCAFCAFQRERGEPGAYA--M-SLEEIVARVKEAYAPGATEVHIVGGLHPNLPFEWYLDMIRTLKEAYPDLHVKAFTAV 136 (351)
T ss_pred cCCccCceeCCCCCcccCC--C-CHHHHHHHHHHHHHCCCcEEEEecCCCCCCCHHHHHHHHHHHHHHCCCceEEeCCHH
Confidence 469999865433322 332 4 4444444333333211 00 11246889999999998754433 34444
Q ss_pred H---HhhhcCCCCCCHHHHHHHHHHCCceEEeccc-----C----CCccccCCCHHHHHHHHHHHHH
Q 047386 418 N---LCSTLKCTSPSAVMFRSAVINAGYRVSGTHV-----N----PLGLKTDAPMGVIWDIMRCWVK 472 (581)
Q Consensus 418 ~---l~~~lk~~~P~~~~~~~aL~~~GY~aSrTH~-----~----p~~iKTdAP~~~i~di~r~w~~ 472 (581)
+ ++..++. ...+.+..|+++|...-. |. + +..-||..+.+..+++++...+
T Consensus 137 ei~~~~~~~g~---~~~e~l~~LkeAGld~~~-~~g~E~~~~~v~~~i~~~~~~~~~~l~~i~~a~~ 199 (351)
T TIGR03700 137 EIHHFSKISGL---PTEEVLDELKEAGLDSMP-GGGAEIFAEEVRQQICPEKISAERWLEIHRTAHE 199 (351)
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHcCCCcCC-CCcccccCHHHHhhcCCCCCCHHHHHHHHHHHHH
Confidence 4 4444444 467888999999976322 21 1 2222456778888899887765
No 362
>PF04135 Nop10p: Nucleolar RNA-binding protein, Nop10p family; InterPro: IPR007264 H/ACA ribonucleoprotein particles (RNPs) are a family of RNA pseudouridine synthases that specify modification sites through guide RNAs. More than 100 mammalian H/ACA RNAs form an equal number of ribonucleoproteins (RNPs) by associating with the same four core proteins: Cbf5, Gar1, Nhp2 and Nop10. The function of these H/ACA RNPs is essential for biogenesis of the ribosome, splicing of precursor mRNAs (pre-mRNAs), maintenance of telomeres and probably for additional cellular processes []. Recent crystal structures of archaeal H/ACA protein complexes show how the same four proteins accommodate >100 distinct but related H/ACA RNAs []. The complex contains a stable core composed of Cbf5 and Nop10, to which Gar1 and Nhp2 subsequently bind, the complex interacts with snoRNAs []. In eukaryotes Nop10 is a nucleolar protein that is specifically associated with H/ACA snoRNAs. It is essential for normal 18S rRNA production and rRNA pseudouridylation by the ribonucleoprotein particles containing H/ACA snoRNAs (H/ACA snoRNPs). Nop10 is probably necessary for the stability of these RNPs [].; PDB: 2RFK_B 3LWR_B 2HVY_C 3HAX_C 3MQK_B 3LWO_B 3LWV_B 3HAY_C 3HJY_B 2EY4_E ....
Probab=53.73 E-value=13 Score=29.63 Aligned_cols=34 Identities=26% Similarity=0.699 Sum_probs=23.3
Q ss_pred EEEEcCCCCceeEeeccccccCCCCcccccCCCCCCCCCcCCCCCCcccccccccccC
Q 047386 312 YVYQCIGCDSFHLQPVGRTASNKNNSVRYLPGFGPVVPQLCSDCGKKFNMGGPIWSGR 369 (581)
Q Consensus 312 ~v~~C~~C~~~~~q~lgr~~~~~~~~~~~~~~~~~~~~~~C~~Cg~~~~~~GPlW~Gp 369 (581)
++-.|.+|+.+.+. ..|+.||+....+-|-=--|
T Consensus 4 ~~r~c~~~~~YTLk------------------------~~cp~cG~~T~~ahPaRFSP 37 (53)
T PF04135_consen 4 YIRKCPGCRVYTLK------------------------DKCPPCGGPTESAHPARFSP 37 (53)
T ss_dssp EEEECTTTCEEESS------------------------SBBTTTSSBSEESSSSSS-T
T ss_pred ccccCCCCCcEeCC------------------------CccCCCCCCCcCCcCCCCCC
Confidence 45589999865432 36999999888777754433
No 363
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=53.71 E-value=53 Score=31.75 Aligned_cols=92 Identities=22% Similarity=0.247 Sum_probs=54.8
Q ss_pred HHHHHHhhhcCCccEEEEE--eCCHHHHHH---HHHHHHHhCCCCCCcEEEEehhHHHHHhhC---CCcccEEeeC-C-C
Q 047386 134 LRALRYAREVEGIGQVVAL--DNDKASVEA---CRRNIKFNGSVACSKVESHLADARVYMLTH---PKEFDVVDLD-P-Y 203 (581)
Q Consensus 134 ~rgIr~a~E~~Ga~~V~an--D~s~~Ave~---i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~---~~~fDvIdLD-P-y 203 (581)
.||+-.++.......|+|- |...+..+- ...|++...-. +-...+.-||..+-... ..+||.|+-. | -
T Consensus 9 SFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~--g~~V~~~VDat~l~~~~~~~~~~FDrIiFNFPH~ 86 (166)
T PF10354_consen 9 SFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELREL--GVTVLHGVDATKLHKHFRLKNQRFDRIIFNFPHV 86 (166)
T ss_pred HHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhc--CCccccCCCCCcccccccccCCcCCEEEEeCCCC
Confidence 3455555553325566664 444333332 34666655321 11234556777664332 4689998877 7 3
Q ss_pred CC-----C----------hHhHHHHHHhccCCCeEEEEe
Q 047386 204 GS-----P----------SVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 204 Gs-----~----------~~fld~A~~~l~~gGlL~vTa 227 (581)
|. . ..|+.+|.++|+++|.+.||-
T Consensus 87 G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl 125 (166)
T PF10354_consen 87 GGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTL 125 (166)
T ss_pred CCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 51 1 167889999999999999997
No 364
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=53.69 E-value=82 Score=31.95 Aligned_cols=74 Identities=19% Similarity=0.231 Sum_probs=46.0
Q ss_pred EEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhC-CCcccEEeeC---CCCCChHhHHHHHHhcc-CCC-
Q 047386 148 QVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTH-PKEFDVVDLD---PYGSPSVFLDSAIQSVA-DGG- 221 (581)
Q Consensus 148 ~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~-~~~fDvIdLD---PyGs~~~fld~A~~~l~-~gG- 221 (581)
+|..+|-++...+.+...++..|.. + ....|....+... .. ||+|.|| |..+...++.. ++... ..-
T Consensus 2 ~ILiveDd~~i~~~l~~~L~~~g~~----v-~~~~~~~~a~~~~~~~-~dlviLD~~lP~~dG~~~~~~-iR~~~~~~~P 74 (229)
T COG0745 2 RILLVEDDPELAELLKEYLEEEGYE----V-DVAADGEEALEAAREQ-PDLVLLDLMLPDLDGLELCRR-LRAKKGSGPP 74 (229)
T ss_pred eEEEEcCCHHHHHHHHHHHHHCCCE----E-EEECCHHHHHHHHhcC-CCEEEEECCCCCCCHHHHHHH-HHhhcCCCCc
Confidence 5889999999999999999999874 2 2333333333221 24 9999999 43332233332 33111 222
Q ss_pred eEEEEec
Q 047386 222 MLMCTAT 228 (581)
Q Consensus 222 lL~vTaT 228 (581)
+|++|+.
T Consensus 75 Ii~Lta~ 81 (229)
T COG0745 75 IIVLTAR 81 (229)
T ss_pred EEEEECC
Confidence 7899974
No 365
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=53.68 E-value=14 Score=27.12 Aligned_cols=15 Identities=33% Similarity=0.928 Sum_probs=10.7
Q ss_pred CCCCCcCCCCCCccc
Q 047386 346 PVVPQLCSDCGKKFN 360 (581)
Q Consensus 346 ~~~~~~C~~Cg~~~~ 360 (581)
|..+..|..||+.+.
T Consensus 18 P~~~~~Cd~cg~~L~ 32 (36)
T PF05191_consen 18 PKVEGVCDNCGGELV 32 (36)
T ss_dssp -SSTTBCTTTTEBEB
T ss_pred CCCCCccCCCCCeeE
Confidence 455678999997653
No 366
>TIGR02010 IscR iron-sulfur cluster assembly transcription factor IscR. This model describes IscR, an iron-sulfur binding transcription factor of the ISC iron-sulfur cluster assembly system.
Probab=53.33 E-value=43 Score=30.93 Aligned_cols=72 Identities=14% Similarity=0.062 Sum_probs=53.5
Q ss_pred HHHHHHHHHhhCCCCCceeeHHHHhhhcCCCCCCHHHHHHHHHHCCceEEecccCCCccccCCCHHH--HHHHHHHHH
Q 047386 396 ISAVLTTISEELPDVPLFLSLHNLCSTLKCTSPSAVMFRSAVINAGYRVSGTHVNPLGLKTDAPMGV--IWDIMRCWV 471 (581)
Q Consensus 396 i~~lL~~~~eEl~~~P~yy~l~~l~~~lk~~~P~~~~~~~aL~~~GY~aSrTH~~p~~iKTdAP~~~--i~di~r~w~ 471 (581)
++-|+.++...- . + .++..+||..++++.+-+.++++.|.++|+-.|..- ..+|+.---|++. +.||++..-
T Consensus 11 l~~l~~La~~~~-~-~-~~s~~~ia~~~~ip~~~l~kil~~L~~~glv~s~~G-~~Ggy~l~~~~~~Itl~dv~~a~e 84 (135)
T TIGR02010 11 VTAMLDLALNAE-T-G-PVTLADISERQGISLSYLEQLFAKLRKAGLVKSVRG-PGGGYQLGRPAEDISVADIIDAVD 84 (135)
T ss_pred HHHHHHHHhCCC-C-C-cCcHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEeC-CCCCEeccCCHHHCcHHHHHHHhC
Confidence 344455544321 2 2 479999999999999999999999999999877433 3457887777776 678888763
No 367
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=53.33 E-value=1.2e+02 Score=31.06 Aligned_cols=96 Identities=23% Similarity=0.293 Sum_probs=57.4
Q ss_pred CCeEEEec-CcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHH-hhCCCcccEEe
Q 047386 122 PPRVLEAL-SASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYM-LTHPKEFDVVD 199 (581)
Q Consensus 122 ~~~VLDaf-sgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l-~~~~~~fDvId 199 (581)
+.+||..= +++|...+++|+. .|+. |++.+.++.-.+.+++ .+++ ..+.....+....+ ......+|+|
T Consensus 166 ~~~vli~g~g~vG~~~~~la~~-~G~~-V~~~~~s~~~~~~~~~----~g~~--~~~~~~~~~~~~~~~~~~~~~~D~v- 236 (338)
T cd08254 166 GETVLVIGLGGLGLNAVQIAKA-MGAA-VIAVDIKEEKLELAKE----LGAD--EVLNSLDDSPKDKKAAGLGGGFDVI- 236 (338)
T ss_pred CCEEEEECCcHHHHHHHHHHHH-cCCE-EEEEcCCHHHHHHHHH----hCCC--EEEcCCCcCHHHHHHHhcCCCceEE-
Confidence 45677731 1246677777886 4765 9999999887776643 4542 11111112222222 1123568965
Q ss_pred eCCCCCChHhHHHHHHhccCCCeEEEEe
Q 047386 200 LDPYGSPSVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 200 LDPyGs~~~fld~A~~~l~~gGlL~vTa 227 (581)
+|--|. ...+..++++|+++|.++..+
T Consensus 237 id~~g~-~~~~~~~~~~l~~~G~~v~~g 263 (338)
T cd08254 237 FDFVGT-QPTFEDAQKAVKPGGRIVVVG 263 (338)
T ss_pred EECCCC-HHHHHHHHHHhhcCCEEEEEC
Confidence 566543 356778899999999987754
No 368
>PRK11014 transcriptional repressor NsrR; Provisional
Probab=53.15 E-value=23 Score=32.90 Aligned_cols=58 Identities=17% Similarity=0.219 Sum_probs=47.0
Q ss_pred eeeHHHHhhhcCCCCCCHHHHHHHHHHCCceEEecccCCCccccCCCHHH--HHHHHHHHH
Q 047386 413 FLSLHNLCSTLKCTSPSAVMFRSAVINAGYRVSGTHVNPLGLKTDAPMGV--IWDIMRCWV 471 (581)
Q Consensus 413 yy~l~~l~~~lk~~~P~~~~~~~aL~~~GY~aSrTH~~p~~iKTdAP~~~--i~di~r~w~ 471 (581)
..+..+||..++++.+++.+++..|.++|+=.|..+. .+|+..--|.++ ++||++.-.
T Consensus 25 ~~s~~~ia~~~~is~~~vrk~l~~L~~~Glv~s~~G~-~GG~~l~~~~~~itl~dI~~aiE 84 (141)
T PRK11014 25 MTSISEVTEVYGVSRNHMVKIINQLSRAGYVTAVRGK-NGGIRLGKPASTIRIGDVVRELE 84 (141)
T ss_pred ccCHHHHHHHHCcCHHHHHHHHHHHHhCCEEEEecCC-CCCeeecCCHHHCCHHHHHHHHc
Confidence 5688999999999999999999999999998888776 445554445554 678888764
No 369
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=53.14 E-value=91 Score=33.88 Aligned_cols=97 Identities=22% Similarity=0.192 Sum_probs=58.0
Q ss_pred CCeEEE-ecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEe-hhHHHHHhh--CCCcccE
Q 047386 122 PPRVLE-ALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHL-ADARVYMLT--HPKEFDV 197 (581)
Q Consensus 122 ~~~VLD-afsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~-~DA~~~l~~--~~~~fDv 197 (581)
+.+||= .-++.|...+.+|+. .|+..|++.|.++.-.+++++ .|.. .+.... .+....+.. ....+|+
T Consensus 186 g~~VlV~G~G~iG~~aiqlAk~-~Ga~~vi~~d~~~~r~~~a~~----~Ga~---~v~~~~~~~~~~~v~~~~~~~g~Dv 257 (393)
T TIGR02819 186 GSTVYIAGAGPVGLAAAASAQL-LGAAVVIVGDLNPARLAQARS----FGCE---TVDLSKDATLPEQIEQILGEPEVDC 257 (393)
T ss_pred CCEEEEECCCHHHHHHHHHHHH-cCCceEEEeCCCHHHHHHHHH----cCCe---EEecCCcccHHHHHHHHcCCCCCcE
Confidence 445544 233444455566665 588888888999887777654 2432 121111 122222221 1245886
Q ss_pred EeeCCCCCCh-------------HhHHHHHHhccCCCeEEEEe
Q 047386 198 VDLDPYGSPS-------------VFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 198 IdLDPyGs~~-------------~fld~A~~~l~~gGlL~vTa 227 (581)
| +|.-|.+. .-++.+++++++||-+++-.
T Consensus 258 v-id~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G 299 (393)
T TIGR02819 258 A-VDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPG 299 (393)
T ss_pred E-EECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEee
Confidence 6 67777653 46888999999999998854
No 370
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=53.05 E-value=69 Score=33.91 Aligned_cols=95 Identities=20% Similarity=0.196 Sum_probs=58.8
Q ss_pred CCCeEEEec--CcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEe-h-hHHHHHhh-CCCcc
Q 047386 121 KPPRVLEAL--SASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHL-A-DARVYMLT-HPKEF 195 (581)
Q Consensus 121 ~~~~VLDaf--sgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~-~-DA~~~l~~-~~~~f 195 (581)
.+.+||=.- ++.|...+.+|+. .|+ +|++.+.++.-.+.+++. .|.+ .+--.. . |....+.. ....+
T Consensus 158 ~g~~VlV~GaaG~vG~~aiqlAk~-~G~-~Vi~~~~~~~k~~~~~~~---lGa~---~vi~~~~~~~~~~~i~~~~~~gv 229 (348)
T PLN03154 158 KGDSVFVSAASGAVGQLVGQLAKL-HGC-YVVGSAGSSQKVDLLKNK---LGFD---EAFNYKEEPDLDAALKRYFPEGI 229 (348)
T ss_pred CCCEEEEecCccHHHHHHHHHHHH-cCC-EEEEEcCCHHHHHHHHHh---cCCC---EEEECCCcccHHHHHHHHCCCCc
Confidence 345554322 4577777888886 577 588999888776666432 3543 221111 2 33333322 23468
Q ss_pred cEEeeCCCCCChHhHHHHHHhccCCCeEEEE
Q 047386 196 DVVDLDPYGSPSVFLDSAIQSVADGGMLMCT 226 (581)
Q Consensus 196 DvIdLDPyGs~~~fld~A~~~l~~gGlL~vT 226 (581)
|+|+ |.-|. ..+..+++++++||-+++.
T Consensus 230 D~v~-d~vG~--~~~~~~~~~l~~~G~iv~~ 257 (348)
T PLN03154 230 DIYF-DNVGG--DMLDAALLNMKIHGRIAVC 257 (348)
T ss_pred EEEE-ECCCH--HHHHHHHHHhccCCEEEEE
Confidence 8775 88774 5678889999999998764
No 371
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=53.03 E-value=79 Score=32.56 Aligned_cols=88 Identities=17% Similarity=0.247 Sum_probs=54.6
Q ss_pred CcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEe--hhHHHHHhhCCCcccEEeeCCCCCCh
Q 047386 130 SASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHL--ADARVYMLTHPKEFDVVDLDPYGSPS 207 (581)
Q Consensus 130 sgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~--~DA~~~l~~~~~~fDvIdLDPyGs~~ 207 (581)
++.|...+..|+...|+ .|++.+-+++-.+.+++ .|++ .+-..+ .+....+......+|+|++|..+ .
T Consensus 172 g~vG~~~~~la~~~~g~-~v~~~~~~~~~~~~~~~----~g~~---~v~~~~~~~~~~~~v~~~~~~~d~vi~~~~~--~ 241 (338)
T PRK09422 172 GGLGNLALQYAKNVFNA-KVIAVDINDDKLALAKE----VGAD---LTINSKRVEDVAKIIQEKTGGAHAAVVTAVA--K 241 (338)
T ss_pred cHHHHHHHHHHHHhCCC-eEEEEeCChHHHHHHHH----cCCc---EEecccccccHHHHHHHhcCCCcEEEEeCCC--H
Confidence 44566666777753366 69999999988777743 3442 221111 22222232222258988888754 3
Q ss_pred HhHHHHHHhccCCCeEEEEe
Q 047386 208 VFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 208 ~fld~A~~~l~~gGlL~vTa 227 (581)
..++.++++++.+|-++...
T Consensus 242 ~~~~~~~~~l~~~G~~v~~g 261 (338)
T PRK09422 242 AAFNQAVDAVRAGGRVVAVG 261 (338)
T ss_pred HHHHHHHHhccCCCEEEEEe
Confidence 66888999999999877653
No 372
>PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after the Escherichia coli protein DeoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerisation domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular
Probab=52.70 E-value=28 Score=27.54 Aligned_cols=48 Identities=17% Similarity=0.199 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhhCCCCCceeeHHHHhhhcCCCCCCHHHHHHHHHHCCceEEecc
Q 047386 395 RISAVLTTISEELPDVPLFLSLHNLCSTLKCTSPSAVMFRSAVINAGYRVSGTH 448 (581)
Q Consensus 395 ri~~lL~~~~eEl~~~P~yy~l~~l~~~lk~~~P~~~~~~~aL~~~GY~aSrTH 448 (581)
|...||..+.+. -+.++.+||..|+++...+..=+..|.+.|+ +-++|
T Consensus 1 R~~~Il~~l~~~-----~~~s~~ela~~~~VS~~TiRRDl~~L~~~g~-i~r~~ 48 (57)
T PF08220_consen 1 RQQQILELLKEK-----GKVSVKELAEEFGVSEMTIRRDLNKLEKQGL-IKRTH 48 (57)
T ss_pred CHHHHHHHHHHc-----CCEEHHHHHHHHCcCHHHHHHHHHHHHHCCC-EEEEc
Confidence 345667776553 3689999999999998888888999999998 77777
No 373
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=52.43 E-value=89 Score=33.14 Aligned_cols=96 Identities=17% Similarity=0.276 Sum_probs=56.6
Q ss_pred CCeEEEe-cCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEeh--hHHHHHhh-CCCcccE
Q 047386 122 PPRVLEA-LSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLA--DARVYMLT-HPKEFDV 197 (581)
Q Consensus 122 ~~~VLDa-fsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~--DA~~~l~~-~~~~fDv 197 (581)
+.+||=. -++.|...+.+|+. .|+..|++.|.++.-.+.+++ .|.+ .-+..... |....+.. ....+|+
T Consensus 187 g~~VlV~G~G~vG~~a~~~ak~-~G~~~vi~~~~~~~~~~~~~~----lGa~--~~i~~~~~~~~~~~~v~~~~~~g~d~ 259 (368)
T cd08300 187 GSTVAVFGLGAVGLAVIQGAKA-AGASRIIGIDINPDKFELAKK----FGAT--DCVNPKDHDKPIQQVLVEMTDGGVDY 259 (368)
T ss_pred CCEEEEECCCHHHHHHHHHHHH-cCCCeEEEEeCCHHHHHHHHH----cCCC--EEEcccccchHHHHHHHHHhCCCCcE
Confidence 4455443 34455566666776 588789999999988776643 4542 11111111 23333322 1236897
Q ss_pred EeeCCCCCChHhHHHHHHhccCC-CeEEEE
Q 047386 198 VDLDPYGSPSVFLDSAIQSVADG-GMLMCT 226 (581)
Q Consensus 198 IdLDPyGs~~~fld~A~~~l~~g-GlL~vT 226 (581)
| +|.-|.+ ..+..++++++++ |.+.+.
T Consensus 260 v-id~~g~~-~~~~~a~~~l~~~~G~~v~~ 287 (368)
T cd08300 260 T-FECIGNV-KVMRAALEACHKGWGTSVII 287 (368)
T ss_pred E-EECCCCh-HHHHHHHHhhccCCCeEEEE
Confidence 7 4766643 5777889999886 866654
No 374
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=52.27 E-value=1.8e+02 Score=30.57 Aligned_cols=116 Identities=11% Similarity=0.108 Sum_probs=65.8
Q ss_pred CcCCCCCCccccc-ccccccCCCCHHHHHHHHHHhhhcc----------cCCCcHHHHHHHHHHHHhhCCCCCc-eeeHH
Q 047386 350 QLCSDCGKKFNMG-GPIWSGRIHDQEWVNSILGEVKSMK----------DRYPAYDRISAVLTTISEELPDVPL-FLSLH 417 (581)
Q Consensus 350 ~~C~~Cg~~~~~~-GPlW~GpLhd~~fv~~ml~~~~~~~----------~~~~t~~ri~~lL~~~~eEl~~~P~-yy~l~ 417 (581)
..|.+|+..-... ++.| ..+.+-|.+.+..+.... ......+++..+++.|+++.++..+ -++..
T Consensus 17 ~~C~FC~~~~~~~~~~~~---~ls~eeI~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~i~~~Ik~~~~~i~~~~~s~~ 93 (309)
T TIGR00423 17 GKCKFCAFRAREKDKDAY---VLSLEEILEKVKEAVAKGATEVCIQGGLNPQLDIEYYEELFRAIKQEFPDVHIHAFSPM 93 (309)
T ss_pred cCCccCCCccCCCCCCcc---cCCHHHHHHHHHHHHHCCCCEEEEecCCCCCCCHHHHHHHHHHHHHHCCCceEEecCHH
Confidence 4699998654332 2333 346555544444333210 1112457889999999998644333 24443
Q ss_pred HH---hhhcCCCCCCHHHHHHHHHHCCceEEecccCCC--------cc-ccCCCHHHHHHHHHHHHH
Q 047386 418 NL---CSTLKCTSPSAVMFRSAVINAGYRVSGTHVNPL--------GL-KTDAPMGVIWDIMRCWVK 472 (581)
Q Consensus 418 ~l---~~~lk~~~P~~~~~~~aL~~~GY~aSrTH~~p~--------~i-KTdAP~~~i~di~r~w~~ 472 (581)
++ +...+. ...+.+..|+++|...-. |.... .+ ....+.+..+++++...+
T Consensus 94 e~~~~~~~~g~---~~~e~l~~LkeAGl~~i~-~~g~E~l~~~~~~~i~~~~~t~~~~l~~i~~a~~ 156 (309)
T TIGR00423 94 EVYFLAKNEGL---SIEEVLKRLKKAGLDSMP-GTGAEILDDSVRRKICPNKLSSDEWLEVIKTAHR 156 (309)
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHcCCCcCC-CCcchhcCHHHHHhhCCCCCCHHHHHHHHHHHHH
Confidence 33 344333 347899999999975331 22211 12 345577888888887754
No 375
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=52.22 E-value=11 Score=27.11 Aligned_cols=35 Identities=20% Similarity=0.388 Sum_probs=19.8
Q ss_pred EEEcCCCCceeEeeccccccCCCCcccccCCCCCCCCCcCCCCCCccc
Q 047386 313 VYQCIGCDSFHLQPVGRTASNKNNSVRYLPGFGPVVPQLCSDCGKKFN 360 (581)
Q Consensus 313 v~~C~~C~~~~~q~lgr~~~~~~~~~~~~~~~~~~~~~~C~~Cg~~~~ 360 (581)
.+.|+.|+.....+-.+.. ..+ ..-.|+.||..+.
T Consensus 2 ~~~CP~C~~~~~v~~~~~~-----------~~~--~~v~C~~C~~~~~ 36 (38)
T TIGR02098 2 RIQCPNCKTSFRVVDSQLG-----------ANG--GKVRCGKCGHVWY 36 (38)
T ss_pred EEECCCCCCEEEeCHHHcC-----------CCC--CEEECCCCCCEEE
Confidence 4689999975433221111 111 1247999998764
No 376
>smart00874 B5 tRNA synthetase B5 domain. This domain is found in phenylalanine-tRNA synthetase beta subunits.
Probab=52.19 E-value=53 Score=26.57 Aligned_cols=58 Identities=17% Similarity=0.175 Sum_probs=39.1
Q ss_pred CceeeHHHHhhhcCCCCCCHHHHHHHHHHCCceEEec------ccCCCccccC--CCHHHHHHHHHH
Q 047386 411 PLFLSLHNLCSTLKCTSPSAVMFRSAVINAGYRVSGT------HVNPLGLKTD--APMGVIWDIMRC 469 (581)
Q Consensus 411 P~yy~l~~l~~~lk~~~P~~~~~~~aL~~~GY~aSrT------H~~p~~iKTd--AP~~~i~di~r~ 469 (581)
+.-++++.+.+.++.+. +..++.+.|..+||.+... .+.+-..+.| -+.+.+-||+|.
T Consensus 3 ~i~~~~~~i~~llG~~i-~~~ei~~~L~~lg~~~~~~~~~~~~~v~~P~~R~Di~~~~DliEei~r~ 68 (71)
T smart00874 3 TITLRRERINRLLGLDL-SAEEIEEILKRLGFEVEVSGDDDTLEVTVPSYRFDILIEADLIEEVARI 68 (71)
T ss_pred EEEecHHHHHHHHCCCC-CHHHHHHHHHHCCCeEEecCCCCeEEEECCCCccccCcccHHHHHHHHH
Confidence 34678899999999864 4688999999999999642 1233334444 234556666654
No 377
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=52.17 E-value=1.1e+02 Score=33.20 Aligned_cols=98 Identities=18% Similarity=0.123 Sum_probs=56.1
Q ss_pred CCeEEEe--cCcccHHHHHHhhhcC-CccEEEEEeCCHHHHHHHHHHHHH----hCCCCCCcEEEEe----hhHHHHHhh
Q 047386 122 PPRVLEA--LSASGLRALRYAREVE-GIGQVVALDNDKASVEACRRNIKF----NGSVACSKVESHL----ADARVYMLT 190 (581)
Q Consensus 122 ~~~VLDa--fsgSG~rgIr~a~E~~-Ga~~V~anD~s~~Ave~i~~Ni~~----N~~~~~~~v~v~~----~DA~~~l~~ 190 (581)
+.+||=. -.+.|..++.+|+... |+.+|++.|.++.-.+.+++.... +|.. ..++. .|....+..
T Consensus 176 g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~----~~~i~~~~~~~~~~~v~~ 251 (410)
T cd08238 176 GGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIE----LLYVNPATIDDLHATLME 251 (410)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCce----EEEECCCccccHHHHHHH
Confidence 3455532 3556666677777531 557899999999998888774211 1221 11221 233332322
Q ss_pred --CCCcccEEeeCCCCCChHhHHHHHHhccCCCeEEE
Q 047386 191 --HPKEFDVVDLDPYGSPSVFLDSAIQSVADGGMLMC 225 (581)
Q Consensus 191 --~~~~fDvIdLDPyGs~~~fld~A~~~l~~gGlL~v 225 (581)
....||+|+.. -|. ...+..++++++++|-+++
T Consensus 252 ~t~g~g~D~vid~-~g~-~~~~~~a~~~l~~~G~~v~ 286 (410)
T cd08238 252 LTGGQGFDDVFVF-VPV-PELVEEADTLLAPDGCLNF 286 (410)
T ss_pred HhCCCCCCEEEEc-CCC-HHHHHHHHHHhccCCeEEE
Confidence 23468977653 233 2566778999997775443
No 378
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=52.03 E-value=46 Score=35.66 Aligned_cols=76 Identities=17% Similarity=0.212 Sum_probs=55.0
Q ss_pred EEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEE-EehhHHHHHhhCCCcccEEeeC---CCCCChHhHHHHHHhccCCCeE
Q 047386 148 QVVALDNDKASVEACRRNIKFNGSVACSKVES-HLADARVYMLTHPKEFDVVDLD---PYGSPSVFLDSAIQSVADGGML 223 (581)
Q Consensus 148 ~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v-~~~DA~~~l~~~~~~fDvIdLD---PyGs~~~fld~A~~~l~~gGlL 223 (581)
+|+.+|-+...+.++..=+..++-. ...+ +...|..+|..+ +.|+||+| ||-.-..|+..+......=-++
T Consensus 2 ~~iiVDdd~a~~~~l~~iLs~~~~~---~~~~~~~~eal~~Le~~--kpDLifldI~mp~~ngiefaeQvr~i~~~v~ii 76 (361)
T COG3947 2 RIIIVDDDAAIVKLLSVILSRAGHE---VRSCSHPVEALDLLEVF--KPDLIFLDIVMPYMNGIEFAEQVRDIESAVPII 76 (361)
T ss_pred cEEEEcchHHHHHHHHHHHHhccch---hhccCCHHHHHHHHHhc--CCCEEEEEeecCCccHHHHHHHHHHhhccCcEE
Confidence 4789999999888888888877721 1122 234566777644 67999999 6666678888877766666788
Q ss_pred EEEec
Q 047386 224 MCTAT 228 (581)
Q Consensus 224 ~vTaT 228 (581)
.+||-
T Consensus 77 fIssh 81 (361)
T COG3947 77 FISSH 81 (361)
T ss_pred EEecc
Confidence 88873
No 379
>PTZ00357 methyltransferase; Provisional
Probab=51.93 E-value=66 Score=38.28 Aligned_cols=101 Identities=14% Similarity=0.107 Sum_probs=68.2
Q ss_pred CeEEEecCcccH---HHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHH-hCCCC-----CCcEEEEehhHHHHHhhC--
Q 047386 123 PRVLEALSASGL---RALRYAREVEGIGQVVALDNDKASVEACRRNIKF-NGSVA-----CSKVESHLADARVYMLTH-- 191 (581)
Q Consensus 123 ~~VLDafsgSG~---rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~-N~~~~-----~~~v~v~~~DA~~~l~~~-- 191 (581)
..|+=+-||=|- +.|++++++.---+|+|++.|+.|+.++..+... ..-.. .++|++++.|-+.+-...
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence 367888888885 5788888753223699999998876666665432 12210 146999999998873210
Q ss_pred --------CCcccEEe---eCCCCCC---hHhHHHHHHhccC----CCeE
Q 047386 192 --------PKEFDVVD---LDPYGSP---SVFLDSAIQSVAD----GGML 223 (581)
Q Consensus 192 --------~~~fDvId---LDPyGs~---~~fld~A~~~l~~----gGlL 223 (581)
-.++|+|+ |-.||.. -+=||.+-+.|++ +||+
T Consensus 782 ~s~~~P~~~gKaDIVVSELLGSFGDNELSPECLDGaQrfLKdiqhsdGIl 831 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVSELLGSLGDNELSPECLEAFHAQLEDIQLSRGIA 831 (1072)
T ss_pred ccccccccccccceehHhhhcccccccCCHHHHHHHHHhhhhhccccccc
Confidence 02689996 6678863 2568888888876 7873
No 380
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=51.85 E-value=99 Score=32.28 Aligned_cols=89 Identities=18% Similarity=0.227 Sum_probs=54.6
Q ss_pred ecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhh-C-CCcccEEeeCCCCC
Q 047386 128 ALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLT-H-PKEFDVVDLDPYGS 205 (581)
Q Consensus 128 afsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~-~-~~~fDvIdLDPyGs 205 (581)
+-++.|...+.+|+. .|+..|++.+.++.-.+.+++ .|.+ .-+.....|...-+.. . ...+|+| +|..|.
T Consensus 180 g~g~vG~~a~q~a~~-~G~~~v~~~~~~~~~~~~~~~----~ga~--~~i~~~~~~~~~~l~~~~~~~~~d~v-id~~g~ 251 (351)
T cd08233 180 GAGPIGLLTILALKA-AGASKIIVSEPSEARRELAEE----LGAT--IVLDPTEVDVVAEVRKLTGGGGVDVS-FDCAGV 251 (351)
T ss_pred CCCHHHHHHHHHHHH-cCCCEEEEECCCHHHHHHHHH----hCCC--EEECCCccCHHHHHHHHhCCCCCCEE-EECCCC
Confidence 345566667777887 588789999999888877743 2543 1111222233222221 1 2348877 566554
Q ss_pred ChHhHHHHHHhccCCCeEEE
Q 047386 206 PSVFLDSAIQSVADGGMLMC 225 (581)
Q Consensus 206 ~~~fld~A~~~l~~gGlL~v 225 (581)
+ ..+..++++++++|.+..
T Consensus 252 ~-~~~~~~~~~l~~~G~~v~ 270 (351)
T cd08233 252 Q-ATLDTAIDALRPRGTAVN 270 (351)
T ss_pred H-HHHHHHHHhccCCCEEEE
Confidence 2 456778999999998755
No 381
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=51.49 E-value=19 Score=37.06 Aligned_cols=40 Identities=20% Similarity=0.236 Sum_probs=33.0
Q ss_pred CCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHH
Q 047386 122 PPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRR 164 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~ 164 (581)
+.-|||.-||||+-|-.... .| -..+.+|||+..++...+
T Consensus 51 ~~~iLDIGCGsGLSg~vL~~--~G-h~wiGvDiSpsML~~a~~ 90 (270)
T KOG1541|consen 51 SGLILDIGCGSGLSGSVLSD--SG-HQWIGVDISPSMLEQAVE 90 (270)
T ss_pred CcEEEEeccCCCcchheecc--CC-ceEEeecCCHHHHHHHHH
Confidence 45799999999998866555 46 567899999999998876
No 382
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=51.10 E-value=85 Score=33.22 Aligned_cols=96 Identities=21% Similarity=0.239 Sum_probs=55.2
Q ss_pred CCeEEE-ecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEe--hhHHHHHhh-CCCcccE
Q 047386 122 PPRVLE-ALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHL--ADARVYMLT-HPKEFDV 197 (581)
Q Consensus 122 ~~~VLD-afsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~--~DA~~~l~~-~~~~fDv 197 (581)
+.+||= .-++.|..++..|+. .|+.+|++.|.+++-.+.+++ .|.. .-+.... .+....+.. ....+|+
T Consensus 188 g~~VlV~G~g~vG~~a~q~ak~-~G~~~vi~~~~~~~~~~~~~~----~Ga~--~~i~~~~~~~~~~~~v~~~~~~~~d~ 260 (369)
T cd08301 188 GSTVAIFGLGAVGLAVAEGARI-RGASRIIGVDLNPSKFEQAKK----FGVT--EFVNPKDHDKPVQEVIAEMTGGGVDY 260 (369)
T ss_pred CCEEEEECCCHHHHHHHHHHHH-cCCCeEEEEcCCHHHHHHHHH----cCCc--eEEcccccchhHHHHHHHHhCCCCCE
Confidence 444443 334445555666775 588789999999987776643 4542 1111111 112222221 2236885
Q ss_pred EeeCCCCCChHhHHHHHHhccCC-CeEEEE
Q 047386 198 VDLDPYGSPSVFLDSAIQSVADG-GMLMCT 226 (581)
Q Consensus 198 IdLDPyGs~~~fld~A~~~l~~g-GlL~vT 226 (581)
| +|--|.+ ..+..+++++++| |.+++-
T Consensus 261 v-id~~G~~-~~~~~~~~~~~~~~g~~v~~ 288 (369)
T cd08301 261 S-FECTGNI-DAMISAFECVHDGWGVTVLL 288 (369)
T ss_pred E-EECCCCh-HHHHHHHHHhhcCCCEEEEE
Confidence 5 6766653 4677789999996 887764
No 383
>TIGR00571 dam DNA adenine methylase (dam). All proteins in this family for which functions are known are DNA-adenine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The DNA adenine methylase (dam) of E. coli and related species is instrumental in distinguishing the newly synthesized strand during DNA replication for methylation-directed mismatch repair. This family includes several phage methylases and a number of different restriction enzyme chromosomal site-specific modification systems.
Probab=50.88 E-value=15 Score=37.99 Aligned_cols=34 Identities=9% Similarity=0.115 Sum_probs=28.4
Q ss_pred eEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHH
Q 047386 124 RVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEAC 162 (581)
Q Consensus 124 ~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i 162 (581)
+..|+|+|+|...+.... ..+++||+|+.-+.+-
T Consensus 28 ~yvEPF~Gggsv~l~~~~-----~~~~lND~n~~Li~~~ 61 (266)
T TIGR00571 28 CLVEPFVGGGAVFFNLNP-----KRYLLNDINEDLINLY 61 (266)
T ss_pred EEEEecCCcchhheeecC-----cEEEEecCCHHHHHHH
Confidence 799999999999996532 4599999999988753
No 384
>PF09082 DUF1922: Domain of unknown function (DUF1922); InterPro: IPR015166 Members of this family consist of a beta-sheet region followed by an alpha-helix and an unstructured C terminus. The beta-sheet region contains a CXCX...XCXC sequence with Cys residues located in two proximal loops and pointing towards each other. This precise function of this set of bacterial proteins is, as yet, unknown []. ; PDB: 1GH9_A.
Probab=50.80 E-value=9.3 Score=32.02 Aligned_cols=31 Identities=23% Similarity=0.775 Sum_probs=17.4
Q ss_pred EEEEcCCCCceeEeeccccccCCCCcccccCCCCCCCCCcCCCCCCccccc
Q 047386 312 YVYQCIGCDSFHLQPVGRTASNKNNSVRYLPGFGPVVPQLCSDCGKKFNMG 362 (581)
Q Consensus 312 ~v~~C~~C~~~~~q~lgr~~~~~~~~~~~~~~~~~~~~~~C~~Cg~~~~~~ 362 (581)
+++.| .||.+....-+.. ...| .||..+++-
T Consensus 2 lifrC-~Cgr~lya~e~~k------------------TkkC-~CG~~l~vk 32 (68)
T PF09082_consen 2 LIFRC-DCGRYLYAKEGAK------------------TKKC-VCGKTLKVK 32 (68)
T ss_dssp EEEEE-TTS--EEEETT-S------------------EEEE-TTTEEEE--
T ss_pred EEEEe-cCCCEEEecCCcc------------------eeEe-cCCCeeeee
Confidence 57899 7986544322211 1369 899998764
No 385
>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]
Probab=49.48 E-value=8.9 Score=36.05 Aligned_cols=13 Identities=15% Similarity=0.330 Sum_probs=10.3
Q ss_pred ceEEEEcCCCCce
Q 047386 310 LSYVYQCIGCDSF 322 (581)
Q Consensus 310 ~g~v~~C~~C~~~ 322 (581)
.++-+||+.||..
T Consensus 25 kML~~hCp~Cg~P 37 (131)
T COG1645 25 KMLAKHCPKCGTP 37 (131)
T ss_pred HHHHhhCcccCCc
Confidence 5666899999973
No 386
>PRK10857 DNA-binding transcriptional regulator IscR; Provisional
Probab=49.34 E-value=28 Score=33.63 Aligned_cols=58 Identities=9% Similarity=-0.036 Sum_probs=49.9
Q ss_pred eeeHHHHhhhcCCCCCCHHHHHHHHHHCCceEEecccCCCccccCCCHHH--HHHHHHHHH
Q 047386 413 FLSLHNLCSTLKCTSPSAVMFRSAVINAGYRVSGTHVNPLGLKTDAPMGV--IWDIMRCWV 471 (581)
Q Consensus 413 yy~l~~l~~~lk~~~P~~~~~~~aL~~~GY~aSrTH~~p~~iKTdAP~~~--i~di~r~w~ 471 (581)
..++.+||..++++.+-+.+++..|.++|+-.|...- .+|+.=.-|++. ++||++..-
T Consensus 25 ~vs~~eIA~~~~ip~~~l~kIl~~L~~aGLv~s~rG~-~GGy~Lar~p~~Itl~dIl~aie 84 (164)
T PRK10857 25 PVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRGP-GGGYLLGKDASSIAVGEVISAVD 84 (164)
T ss_pred cCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeCCCC-CCCeeccCCHHHCCHHHHHHHHc
Confidence 4799999999999999999999999999999985444 348888888887 789998774
No 387
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=48.63 E-value=15 Score=35.94 Aligned_cols=9 Identities=33% Similarity=0.789 Sum_probs=8.3
Q ss_pred EEEcCCCCc
Q 047386 313 VYQCIGCDS 321 (581)
Q Consensus 313 v~~C~~C~~ 321 (581)
+|.|..||.
T Consensus 134 ~~vC~vCGy 142 (166)
T COG1592 134 VWVCPVCGY 142 (166)
T ss_pred EEEcCCCCC
Confidence 999999985
No 388
>COG1096 Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis]
Probab=48.54 E-value=31 Score=34.37 Aligned_cols=15 Identities=27% Similarity=0.676 Sum_probs=12.0
Q ss_pred ccceEEE-EcCCCCce
Q 047386 308 LKLSYVY-QCIGCDSF 322 (581)
Q Consensus 308 ~k~g~v~-~C~~C~~~ 322 (581)
..+|.|| +|+.|+..
T Consensus 143 ~dlGVI~A~CsrC~~~ 158 (188)
T COG1096 143 NDLGVIYARCSRCRAP 158 (188)
T ss_pred CcceEEEEEccCCCcc
Confidence 4589887 99999864
No 389
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=48.45 E-value=40 Score=35.32 Aligned_cols=110 Identities=18% Similarity=0.227 Sum_probs=61.2
Q ss_pred CCCeEEEecCccc----HHHHHHhhhcCC----ccEEEEEeCCHHHHHHHHH------HHHHhCCCC----------CC-
Q 047386 121 KPPRVLEALSASG----LRALRYAREVEG----IGQVVALDNDKASVEACRR------NIKFNGSVA----------CS- 175 (581)
Q Consensus 121 ~~~~VLDafsgSG----~rgIr~a~E~~G----a~~V~anD~s~~Ave~i~~------Ni~~N~~~~----------~~- 175 (581)
...+|.-+=|+|| .+|+-.+...+. .-+|+|.|||..+++.++. ++. -+++. .+
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~-~~~~~~~~~ryF~~~~~~ 174 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELL-RGLPPELLRRYFERGGDG 174 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhh-ccCCHHHHhhhEeecCCC
Confidence 3569999999999 444444443221 3479999999999998763 331 12210 01
Q ss_pred cEEEEehhHHHH--------Hhh--CCCcccEEeeCC---CCC-C--hHhHHHHHHhccCCCeEEEEeccchh
Q 047386 176 KVESHLADARVY--------MLT--HPKEFDVVDLDP---YGS-P--SVFLDSAIQSVADGGMLMCTATDMAV 232 (581)
Q Consensus 176 ~v~v~~~DA~~~--------l~~--~~~~fDvIdLDP---yGs-~--~~fld~A~~~l~~gGlL~vTaTD~a~ 232 (581)
..++ ....... |.. ....||+|++== |-. + ...+..-..+|++||+|.+=+++...
T Consensus 175 ~y~v-~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~sE~~~ 246 (268)
T COG1352 175 SYRV-KEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGHSETIP 246 (268)
T ss_pred cEEE-ChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEccCcccC
Confidence 1111 1111111 111 124689886432 211 1 23455556789999999997765543
No 390
>PF06044 DRP: Dam-replacing family; InterPro: IPR010324 Dam-replacing protein (DRP) is a restriction endonuclease that is flanked by pseudo-transposable small repeat elements. The replacement of Dam-methylase by DRP allows phase variation through slippage-like mechanisms in several pathogenic isolates of Neisseria meningitidis [].; PDB: 4ESJ_A.
Probab=48.00 E-value=5.9 Score=40.79 Aligned_cols=34 Identities=24% Similarity=0.633 Sum_probs=12.3
Q ss_pred EEcCCCCceeEeeccccccCCCCcccccCCCCCCCCCcCCCCCCcccc
Q 047386 314 YQCIGCDSFHLQPVGRTASNKNNSVRYLPGFGPVVPQLCSDCGKKFNM 361 (581)
Q Consensus 314 ~~C~~C~~~~~q~lgr~~~~~~~~~~~~~~~~~~~~~~C~~Cg~~~~~ 361 (581)
.+|+.||+..+..+... .|..+-.|+.|+..+.+
T Consensus 32 ~yCP~Cg~~~L~~f~NN--------------~PVaDF~C~~C~eeyEL 65 (254)
T PF06044_consen 32 MYCPNCGSKPLSKFENN--------------RPVADFYCPNCNEEYEL 65 (254)
T ss_dssp ---TTT--SS-EE----------------------EEE-TTT--EEEE
T ss_pred CcCCCCCChhHhhccCC--------------CccceeECCCCchHHhh
Confidence 48999998755533221 24455579999977654
No 391
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=47.84 E-value=19 Score=39.71 Aligned_cols=80 Identities=21% Similarity=0.273 Sum_probs=63.5
Q ss_pred CCCeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhC-CCcccEEe
Q 047386 121 KPPRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTH-PKEFDVVD 199 (581)
Q Consensus 121 ~~~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~-~~~fDvId 199 (581)
.|.+|+|..|+-|.-.++.|.=.+.-.+|++.|.++.-+++++.-+..-|+. .++...+|.....+.. -+....|.
T Consensus 213 ~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~---~~~~~~~df~~t~~~~~~~~v~~iL 289 (413)
T KOG2360|consen 213 PGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVS---IVESVEGDFLNTATPEKFRDVTYIL 289 (413)
T ss_pred CCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCC---ccccccccccCCCCcccccceeEEE
Confidence 3568999999999999999876565678999999999999999999999985 5677788876542211 12346799
Q ss_pred eCCC
Q 047386 200 LDPY 203 (581)
Q Consensus 200 LDPy 203 (581)
+||-
T Consensus 290 ~Dps 293 (413)
T KOG2360|consen 290 VDPS 293 (413)
T ss_pred eCCC
Confidence 9995
No 392
>PRK10083 putative oxidoreductase; Provisional
Probab=47.24 E-value=92 Score=32.14 Aligned_cols=90 Identities=11% Similarity=0.145 Sum_probs=52.3
Q ss_pred CcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEeeCCCCCChHh
Q 047386 130 SASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDLDPYGSPSVF 209 (581)
Q Consensus 130 sgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdLDPyGs~~~f 209 (581)
++.|...+.+|+...|+..|++.|.+++..+++++ .|.+ .-+.....+....+......+| +.+|--|.+ .-
T Consensus 170 g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~----~Ga~--~~i~~~~~~~~~~~~~~g~~~d-~vid~~g~~-~~ 241 (339)
T PRK10083 170 GPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKE----SGAD--WVINNAQEPLGEALEEKGIKPT-LIIDAACHP-SI 241 (339)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHH----hCCc--EEecCccccHHHHHhcCCCCCC-EEEECCCCH-HH
Confidence 44455555566643488889999999988877654 3442 1111112233333322221234 557776653 34
Q ss_pred HHHHHHhccCCCeEEEEe
Q 047386 210 LDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 210 ld~A~~~l~~gGlL~vTa 227 (581)
+..++++|+++|-++.-.
T Consensus 242 ~~~~~~~l~~~G~~v~~g 259 (339)
T PRK10083 242 LEEAVTLASPAARIVLMG 259 (339)
T ss_pred HHHHHHHhhcCCEEEEEc
Confidence 566789999999987643
No 393
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=47.18 E-value=10 Score=25.10 Aligned_cols=10 Identities=30% Similarity=1.238 Sum_probs=7.7
Q ss_pred CcCCCCCCcc
Q 047386 350 QLCSDCGKKF 359 (581)
Q Consensus 350 ~~C~~Cg~~~ 359 (581)
..|+.||.++
T Consensus 14 ~fC~~CG~~l 23 (23)
T PF13240_consen 14 KFCPNCGTPL 23 (23)
T ss_pred cchhhhCCcC
Confidence 4699999764
No 394
>PF12172 DUF35_N: Rubredoxin-like zinc ribbon domain (DUF35_N); InterPro: IPR022002 This domain has no known function and is found in conserved hypothetical archaeal and bacterial proteins. The domain is duplicated in O53566 from SWISSPROT. The structure of a DUF35 representative reveals two long N-terminal helices followed by a rubredoxin-like zinc ribbon domain represented in this family and a C-terminal OB fold domain. Zinc is chelated by the four conserved cysteines in the alignment. ; PDB: 3IRB_A.
Probab=46.96 E-value=16 Score=26.42 Aligned_cols=14 Identities=14% Similarity=0.437 Sum_probs=7.4
Q ss_pred eEEEEcCCCCceeE
Q 047386 311 SYVYQCIGCDSFHL 324 (581)
Q Consensus 311 g~v~~C~~C~~~~~ 324 (581)
-++.+|..||.+++
T Consensus 9 l~~~rC~~Cg~~~~ 22 (37)
T PF12172_consen 9 LLGQRCRDCGRVQF 22 (37)
T ss_dssp EEEEE-TTT--EEE
T ss_pred EEEEEcCCCCCEec
Confidence 35568999987543
No 395
>PF08279 HTH_11: HTH domain; InterPro: IPR013196 Winged helix DNA-binding proteins share a related winged helix-turn-helix DNA-binding motif, where the "wings", or loops, are small beta-sheets. The winged helix motif consists of two wings (W1, W2), three alpha helices (H1, H2, H3) and three beta-sheets (S1, S2, S3) arranged in the order H1-S1-H2-H3-S2-W1-S3-W2 []. The DNA-recognition helix makes sequence-specific DNA contacts with the major groove of DNA, while the wings make different DNA contacts, often with the minor groove or the backbone of DNA. Several winged-helix proteins display an exposed patch of hydrophobic residues thought to mediate protein-protein interactions. This entry represents a subset of the winged helix domain superfamily which is predominantly found in bacterial proteins, though there are also some archaeal and eukaryotic examples. This domain is commonly found in the biotin (vitamin H) repressor protein BirA which regulates transcription of the biotin operon []. It is also found in other proteins including regulators of amino acid biosynthsis such as LysM [], and regulators of carbohydrate metabolisms such as LicR and FrvR [, ].; PDB: 1HXD_B 2EWN_B 1BIA_A 1BIB_A 1J5Y_A 3V7S_A 3V7C_A 3RKW_A 3RIR_A 3RKX_A ....
Probab=46.92 E-value=42 Score=25.71 Aligned_cols=47 Identities=13% Similarity=0.094 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhhCCCCCceeeHHHHhhhcCCCCCCHHHHHHHHHHCCceEE
Q 047386 395 RISAVLTTISEELPDVPLFLSLHNLCSTLKCTSPSAVMFRSAVINAGYRVS 445 (581)
Q Consensus 395 ri~~lL~~~~eEl~~~P~yy~l~~l~~~lk~~~P~~~~~~~aL~~~GY~aS 445 (581)
|...||..+.+.- . +++..+||..++++.-....-+..|...|+.+.
T Consensus 1 R~~~il~~L~~~~--~--~it~~eLa~~l~vS~rTi~~~i~~L~~~~~~I~ 47 (55)
T PF08279_consen 1 RQKQILKLLLESK--E--PITAKELAEELGVSRRTIRRDIKELREWGIPIE 47 (55)
T ss_dssp HHHHHHHHHHHTT--T--SBEHHHHHHHCTS-HHHHHHHHHHHHHTT-EEE
T ss_pred CHHHHHHHHHHcC--C--CcCHHHHHHHhCCCHHHHHHHHHHHHHCCCeEE
Confidence 4556777775432 2 399999999999998888999999999996654
No 396
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=46.76 E-value=1e+02 Score=31.49 Aligned_cols=87 Identities=24% Similarity=0.222 Sum_probs=54.8
Q ss_pred CCeEEE-ecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEee
Q 047386 122 PPRVLE-ALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDL 200 (581)
Q Consensus 122 ~~~VLD-afsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdL 200 (581)
+.+||= +.++.|...+.+|+. .|+. |++.+.+++-.+.+++ .|.. .+..... .+ ....||+| +
T Consensus 156 g~~vlV~g~g~vg~~~~q~a~~-~G~~-vi~~~~~~~~~~~~~~----~g~~---~~~~~~~----~~--~~~~~d~v-i 219 (319)
T cd08242 156 GDKVAVLGDGKLGLLIAQVLAL-TGPD-VVLVGRHSEKLALARR----LGVE---TVLPDEA----ES--EGGGFDVV-V 219 (319)
T ss_pred CCEEEEECCCHHHHHHHHHHHH-cCCe-EEEEcCCHHHHHHHHH----cCCc---EEeCccc----cc--cCCCCCEE-E
Confidence 334443 445555666667776 5876 8999999888777765 3543 1111111 11 23468877 5
Q ss_pred CCCCCChHhHHHHHHhccCCCeEEE
Q 047386 201 DPYGSPSVFLDSAIQSVADGGMLMC 225 (581)
Q Consensus 201 DPyGs~~~fld~A~~~l~~gGlL~v 225 (581)
|..|. ...++.++++++++|-+.+
T Consensus 220 d~~g~-~~~~~~~~~~l~~~g~~v~ 243 (319)
T cd08242 220 EATGS-PSGLELALRLVRPRGTVVL 243 (319)
T ss_pred ECCCC-hHHHHHHHHHhhcCCEEEE
Confidence 77765 3567778999999998876
No 397
>cd00092 HTH_CRP helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family.
Probab=46.64 E-value=34 Score=26.78 Aligned_cols=35 Identities=14% Similarity=0.072 Sum_probs=31.1
Q ss_pred ceeeHHHHhhhcCCCCCCHHHHHHHHHHCCceEEe
Q 047386 412 LFLSLHNLCSTLKCTSPSAVMFRSAVINAGYRVSG 446 (581)
Q Consensus 412 ~yy~l~~l~~~lk~~~P~~~~~~~aL~~~GY~aSr 446 (581)
...+..+||..++++.+.+..++..|.+.||=...
T Consensus 24 ~~~s~~ela~~~g~s~~tv~r~l~~L~~~g~i~~~ 58 (67)
T cd00092 24 LPLTRQEIADYLGLTRETVSRTLKELEEEGLISRR 58 (67)
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEec
Confidence 45789999999999999999999999999997643
No 398
>PF13545 HTH_Crp_2: Crp-like helix-turn-helix domain; PDB: 3LA2_A 3LA3_B 3LA7_A 3B02_A 3E97_A 2H6C_B 1OMI_A 2BGC_H 2BEO_A 2GAU_A ....
Probab=46.08 E-value=13 Score=30.31 Aligned_cols=35 Identities=14% Similarity=0.227 Sum_probs=31.7
Q ss_pred CCceeeHHHHhhhcCCCCCCHHHHHHHHHHCCceE
Q 047386 410 VPLFLSLHNLCSTLKCTSPSAVMFRSAVINAGYRV 444 (581)
Q Consensus 410 ~P~yy~l~~l~~~lk~~~P~~~~~~~aL~~~GY~a 444 (581)
.++.++...||..++++......+++.|++.|+=-
T Consensus 25 ~~~~lt~~~iA~~~g~sr~tv~r~l~~l~~~g~I~ 59 (76)
T PF13545_consen 25 IPLPLTQEEIADMLGVSRETVSRILKRLKDEGIIE 59 (76)
T ss_dssp EEEESSHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred EEecCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 46788999999999999999999999999999753
No 399
>KOG0919 consensus C-5 cytosine-specific DNA methylase [Transcription]
Probab=45.90 E-value=20 Score=37.40 Aligned_cols=80 Identities=24% Similarity=0.271 Sum_probs=49.1
Q ss_pred CCeEEEecCcccHHHHHHhhh---cCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEE
Q 047386 122 PPRVLEALSASGLRALRYARE---VEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVV 198 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E---~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvI 198 (581)
+.+||+++||.|. +.||.+ ++ +.-|-|+|+|+.|-+.-..|-..|-+. ..+|+.+. +..+- .-.||.+
T Consensus 3 pLrVlelysg~gg--mhyal~~a~ip-aqiVaAiDvNtvANevY~~N~h~~L~k-~~~I~~lt--~kefd---~l~~~m~ 73 (338)
T KOG0919|consen 3 PLRVLELYSGHGG--MHYALEDAQIP-AQIVAAIDVNTVANEVYAHNYHSNLVK-TRNIQSLT--VKEFD---KLQANML 73 (338)
T ss_pred ceehhhhhhccch--hhhhHhhhcCc-hhhEEEEecchhHHHHHhcCcccchhh-ccccceee--Hhhhh---hcccceE
Confidence 5689999988885 556554 33 566889999999999988884433322 11222221 11111 1257889
Q ss_pred eeCCCCCChHhHHH
Q 047386 199 DLDPYGSPSVFLDS 212 (581)
Q Consensus 199 dLDPyGs~~~fld~ 212 (581)
.+-|+- .||-.-
T Consensus 74 lMSPpC--QPfTRi 85 (338)
T KOG0919|consen 74 LMSPPC--QPFTRI 85 (338)
T ss_pred eeCCCC--Cchhhh
Confidence 998863 355543
No 400
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=45.57 E-value=1.2e+02 Score=30.65 Aligned_cols=85 Identities=16% Similarity=0.133 Sum_probs=51.0
Q ss_pred CcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhh-CCCcccEEeeCCCCCChH
Q 047386 130 SASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLT-HPKEFDVVDLDPYGSPSV 208 (581)
Q Consensus 130 sgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~-~~~~fDvIdLDPyGs~~~ 208 (581)
++.|...+.+|+. .|+. |++.+.+++-.+.++ ..|.+ .+-..+......... ..+.+|+|+ |..|. +
T Consensus 157 g~vg~~~~~~a~~-~g~~-v~~~~~~~~~~~~~~----~~g~~---~~~~~~~~~~~~~~~~~~~~~d~vi-~~~~~--~ 224 (325)
T cd05280 157 GGVGSIAVAILAK-LGYT-VVALTGKEEQADYLK----SLGAS---EVLDREDLLDESKKPLLKARWAGAI-DTVGG--D 224 (325)
T ss_pred cHHHHHHHHHHHH-cCCE-EEEEeCCHHHHHHHH----hcCCc---EEEcchhHHHHHHHHhcCCCccEEE-ECCch--H
Confidence 4555566777876 4765 899999987766653 23432 221111111112211 124588775 88775 5
Q ss_pred hHHHHHHhccCCCeEEEE
Q 047386 209 FLDSAIQSVADGGMLMCT 226 (581)
Q Consensus 209 fld~A~~~l~~gGlL~vT 226 (581)
-+..++++++.+|.++.-
T Consensus 225 ~~~~~~~~l~~~g~~v~~ 242 (325)
T cd05280 225 VLANLLKQTKYGGVVASC 242 (325)
T ss_pred HHHHHHHhhcCCCEEEEE
Confidence 678889999999987654
No 401
>PRK08324 short chain dehydrogenase; Validated
Probab=45.53 E-value=3.6e+02 Score=31.61 Aligned_cols=76 Identities=21% Similarity=0.146 Sum_probs=45.1
Q ss_pred CCCCeEEEecCcccHHHHHHhhhc--CCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHH------HHHhh-
Q 047386 120 LKPPRVLEALSASGLRALRYAREV--EGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADAR------VYMLT- 190 (581)
Q Consensus 120 ~~~~~VLDafsgSG~rgIr~a~E~--~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~------~~l~~- 190 (581)
+.+.+|| +..|+|.+|...++.+ .|+ +|++.|.++...+.+...+... ..+.++..|.. .++..
T Consensus 420 l~gk~vL-VTGasggIG~~la~~L~~~Ga-~Vvl~~r~~~~~~~~~~~l~~~-----~~v~~v~~Dvtd~~~v~~~~~~~ 492 (681)
T PRK08324 420 LAGKVAL-VTGAAGGIGKATAKRLAAEGA-CVVLADLDEEAAEAAAAELGGP-----DRALGVACDVTDEAAVQAAFEEA 492 (681)
T ss_pred CCCCEEE-EecCCCHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHHhcc-----CcEEEEEecCCCHHHHHHHHHHH
Confidence 4455555 6677888888776543 476 6999999998776665544321 23555555532 22221
Q ss_pred --CCCcccEEeeCC
Q 047386 191 --HPKEFDVVDLDP 202 (581)
Q Consensus 191 --~~~~fDvIdLDP 202 (581)
.-...|+|+.-.
T Consensus 493 ~~~~g~iDvvI~~A 506 (681)
T PRK08324 493 ALAFGGVDIVVSNA 506 (681)
T ss_pred HHHcCCCCEEEECC
Confidence 123578886543
No 402
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=45.21 E-value=2.1e+02 Score=29.26 Aligned_cols=99 Identities=23% Similarity=0.275 Sum_probs=63.1
Q ss_pred CCCeEEEecCccc----HHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhH-HHHHhhCCCcc
Q 047386 121 KPPRVLEALSASG----LRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADA-RVYMLTHPKEF 195 (581)
Q Consensus 121 ~~~~VLDafsgSG----~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA-~~~l~~~~~~f 195 (581)
....++++.|+-| ..||-+|..--| .+++++--++......++.+.-.++. +.++++.+|+ ..+|... ...
T Consensus 41 nAkliVe~~s~g~~~~ttiaLaaAAr~Tg-GR~vCIvp~~~~~~~~~~~l~~~~~~--~~vEfvvg~~~e~~~~~~-~~i 116 (218)
T PF07279_consen 41 NAKLIVEAWSSGGAISTTIALAAAARQTG-GRHVCIVPDEQSLSEYKKALGEAGLS--DVVEFVVGEAPEEVMPGL-KGI 116 (218)
T ss_pred cceEEEEEecCCCchHhHHHHHHHHHhcC-CeEEEEcCChhhHHHHHHHHhhcccc--ccceEEecCCHHHHHhhc-cCC
Confidence 3457899977644 456666543223 46888888888888888888777765 5678888884 5667543 467
Q ss_pred cEEeeCCCCCChHhHHHHHHhc--cCCCeEEE
Q 047386 196 DVVDLDPYGSPSVFLDSAIQSV--ADGGMLMC 225 (581)
Q Consensus 196 DvIdLDPyGs~~~fld~A~~~l--~~gGlL~v 225 (581)
|++.+|-= ...|+...++++ .+.|-+.|
T Consensus 117 DF~vVDc~--~~d~~~~vl~~~~~~~~GaVVV 146 (218)
T PF07279_consen 117 DFVVVDCK--REDFAARVLRAAKLSPRGAVVV 146 (218)
T ss_pred CEEEEeCC--chhHHHHHHHHhccCCCceEEE
Confidence 88888873 134443334433 33454444
No 403
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=45.13 E-value=1.7e+02 Score=29.30 Aligned_cols=87 Identities=23% Similarity=0.295 Sum_probs=53.6
Q ss_pred ecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEeeCCCCCCh
Q 047386 128 ALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDLDPYGSPS 207 (581)
Q Consensus 128 afsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdLDPyGs~~ 207 (581)
+-++.|...+++|+. .|+. |++.+.+++-.+.+++ .|+. .+-....+....+...+..+|+|+ |.-|.
T Consensus 151 a~g~~g~~~~~~a~~-~g~~-v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~i~~~~~~~d~vl-~~~~~-- 218 (320)
T cd08243 151 GTSSVGLAALKLAKA-LGAT-VTATTRSPERAALLKE----LGAD---EVVIDDGAIAEQLRAAPGGFDKVL-ELVGT-- 218 (320)
T ss_pred CCChHHHHHHHHHHH-cCCE-EEEEeCCHHHHHHHHh----cCCc---EEEecCccHHHHHHHhCCCceEEE-ECCCh--
Confidence 345677777888886 5765 8888888876555532 3442 221112222222222245689886 76554
Q ss_pred HhHHHHHHhccCCCeEEEE
Q 047386 208 VFLDSAIQSVADGGMLMCT 226 (581)
Q Consensus 208 ~fld~A~~~l~~gGlL~vT 226 (581)
..+..++++|+.+|.++..
T Consensus 219 ~~~~~~~~~l~~~g~~v~~ 237 (320)
T cd08243 219 ATLKDSLRHLRPGGIVCMT 237 (320)
T ss_pred HHHHHHHHHhccCCEEEEE
Confidence 5688889999999988654
No 404
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=44.63 E-value=43 Score=27.13 Aligned_cols=20 Identities=15% Similarity=0.112 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHcCCceEE
Q 047386 261 RILLACIESHANRYKRYIEP 280 (581)
Q Consensus 261 Rill~~i~~~Aa~~~r~i~P 280 (581)
+.|...|...|..+|+.++.
T Consensus 2 ~~~~~~L~yka~~~G~~v~~ 21 (69)
T PF07282_consen 2 GQFRQRLEYKAEEYGIQVVE 21 (69)
T ss_pred HHHHHHHHHHHHHhCCEEEE
Confidence 35677888888888876543
No 405
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=44.31 E-value=1.7e+02 Score=33.51 Aligned_cols=93 Identities=19% Similarity=0.142 Sum_probs=64.9
Q ss_pred cCCCCHHHHHHHHHHhhhcc-------cC--CCcHHHHHHHHHHHHhhCC-CCCceeeHHH-----Hhhh----------
Q 047386 368 GRIHDQEWVNSILGEVKSMK-------DR--YPAYDRISAVLTTISEELP-DVPLFLSLHN-----LCST---------- 422 (581)
Q Consensus 368 GpLhd~~fv~~ml~~~~~~~-------~~--~~t~~ri~~lL~~~~eEl~-~~P~yy~l~~-----l~~~---------- 422 (581)
+|.|+.+|+-++.+.+.++. +. +.+..++..+++.++++++ +.|+.++.|. ++..
T Consensus 149 sp~~t~e~~~~~a~~l~~~Gad~I~IkDtaGll~P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA~An~laAieAGad~ 228 (499)
T PRK12330 149 SPIHTVEGFVEQAKRLLDMGADSICIKDMAALLKPQPAYDIVKGIKEACGEDTRINLHCHSTTGVTLVSLMKAIEAGVDV 228 (499)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEeCCCccCCCHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCcHHHHHHHHHHcCCCE
Confidence 36899999999988776542 22 3356789999999999985 6888776662 1111
Q ss_pred ---------cCCCCCCHHHHHHHHHHCCceEEecccCCCccccCCCHHHHHHHHHHHHH
Q 047386 423 ---------LKCTSPSAVMFRSAVINAGYRVSGTHVNPLGLKTDAPMGVIWDIMRCWVK 472 (581)
Q Consensus 423 ---------lk~~~P~~~~~~~aL~~~GY~aSrTH~~p~~iKTdAP~~~i~di~r~w~~ 472 (581)
.+...|++..++.+|...| +.|+-.++.+.++-+-|.+
T Consensus 229 vDtai~Glg~~aGn~atE~vv~~L~~~g------------~~tgiDl~~L~~i~~~~~~ 275 (499)
T PRK12330 229 VDTAISSMSLGPGHNPTESLVEMLEGTG------------YTTKLDMDRLLKIRDHFKK 275 (499)
T ss_pred EEeecccccccccchhHHHHHHHHHhcC------------CCCCCCHHHHHHHHHHHHH
Confidence 1234688899999998655 4566677777776666643
No 406
>PRK05978 hypothetical protein; Provisional
Probab=44.22 E-value=11 Score=36.17 Aligned_cols=37 Identities=19% Similarity=0.495 Sum_probs=24.4
Q ss_pred cceEEEEcCCCCceeEeeccccccCCCCcccccCCCCCCCCCcCCCCCCccccc
Q 047386 309 KLSYVYQCIGCDSFHLQPVGRTASNKNNSVRYLPGFGPVVPQLCSDCGKKFNMG 362 (581)
Q Consensus 309 k~g~v~~C~~C~~~~~q~lgr~~~~~~~~~~~~~~~~~~~~~~C~~Cg~~~~~~ 362 (581)
.-|+-..|+.||. |+... +| -.+...|++||..+...
T Consensus 29 ~rGl~grCP~CG~------G~LF~------g~-----Lkv~~~C~~CG~~~~~~ 65 (148)
T PRK05978 29 WRGFRGRCPACGE------GKLFR------AF-----LKPVDHCAACGEDFTHH 65 (148)
T ss_pred HHHHcCcCCCCCC------Ccccc------cc-----cccCCCccccCCccccC
Confidence 3578889999985 33320 11 12446799999988754
No 407
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=43.54 E-value=25 Score=33.80 Aligned_cols=46 Identities=11% Similarity=0.240 Sum_probs=27.3
Q ss_pred eEEEEcCCCCceeEeeccccccCCCCcccccCCCCCCCCCcCCCCCCcccccccccccCCCCHHHHHHHHH
Q 047386 311 SYVYQCIGCDSFHLQPVGRTASNKNNSVRYLPGFGPVVPQLCSDCGKKFNMGGPIWSGRIHDQEWVNSILG 381 (581)
Q Consensus 311 g~v~~C~~C~~~~~q~lgr~~~~~~~~~~~~~~~~~~~~~~C~~Cg~~~~~~GPlW~GpLhd~~fv~~ml~ 381 (581)
...|+|+.|+....+ .-+.. .+-.||.||+.+ -...|.++++.+-+
T Consensus 107 ~~~Y~Cp~c~~r~tf---------------~eA~~--~~F~Cp~Cg~~L--------~~~dn~~~i~~l~~ 152 (158)
T TIGR00373 107 NMFFICPNMCVRFTF---------------NEAME--LNFTCPRCGAML--------DYLDNSEAIEKLEE 152 (158)
T ss_pred CCeEECCCCCcEeeH---------------HHHHH--cCCcCCCCCCEe--------eeccCHHHHHHHHH
Confidence 455789999854332 11110 123699999774 45667777766543
No 408
>PRK08267 short chain dehydrogenase; Provisional
Probab=42.61 E-value=2.8e+02 Score=27.35 Aligned_cols=67 Identities=18% Similarity=0.071 Sum_probs=41.1
Q ss_pred ecCcccHHHHHHhhhc--CCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHH------HHhhC----CCcc
Q 047386 128 ALSASGLRALRYAREV--EGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARV------YMLTH----PKEF 195 (581)
Q Consensus 128 afsgSG~rgIr~a~E~--~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~------~l~~~----~~~f 195 (581)
...|||..|...++.+ .|+ .|++.|.++...+.+.+.+. + .++.+++.|+.. ++... ..+.
T Consensus 6 ItGasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~--~----~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~i 78 (260)
T PRK08267 6 ITGAASGIGRATALLFAAEGW-RVGAYDINEAGLAALAAELG--A----GNAWTGALDVTDRAAWDAALADFAAATGGRL 78 (260)
T ss_pred EeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhc--C----CceEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 4467777777766543 465 69999999988777765544 2 245666666542 22211 2357
Q ss_pred cEEeeC
Q 047386 196 DVVDLD 201 (581)
Q Consensus 196 DvIdLD 201 (581)
|+|+.-
T Consensus 79 d~vi~~ 84 (260)
T PRK08267 79 DVLFNN 84 (260)
T ss_pred CEEEEC
Confidence 888653
No 409
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=41.66 E-value=23 Score=25.11 Aligned_cols=10 Identities=30% Similarity=0.697 Sum_probs=7.7
Q ss_pred EEEcCCCCce
Q 047386 313 VYQCIGCDSF 322 (581)
Q Consensus 313 v~~C~~C~~~ 322 (581)
+|.|..||..
T Consensus 1 ~~~C~~CGy~ 10 (33)
T cd00350 1 KYVCPVCGYI 10 (33)
T ss_pred CEECCCCCCE
Confidence 3789999853
No 410
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=41.51 E-value=1.4e+02 Score=31.44 Aligned_cols=97 Identities=22% Similarity=0.308 Sum_probs=55.8
Q ss_pred CCeEEE-ecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHH-HHHhh-CCCcccEE
Q 047386 122 PPRVLE-ALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADAR-VYMLT-HPKEFDVV 198 (581)
Q Consensus 122 ~~~VLD-afsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~-~~l~~-~~~~fDvI 198 (581)
+.+||= +-++.|...+++|+. .|+..|++.+.++.-.+.+++ .++. .-+.....+.. .+... ....||+|
T Consensus 188 g~~VlI~g~g~vG~~~~~lak~-~G~~~vi~~~~s~~~~~~~~~----~g~~--~v~~~~~~~~~~~l~~~~~~~~~d~v 260 (367)
T cd08263 188 GETVAVIGVGGVGSSAIQLAKA-FGASPIIAVDVRDEKLAKAKE----LGAT--HTVNAAKEDAVAAIREITGGRGVDVV 260 (367)
T ss_pred CCEEEEECCcHHHHHHHHHHHH-cCCCeEEEEeCCHHHHHHHHH----hCCc--eEecCCcccHHHHHHHHhCCCCCCEE
Confidence 344443 223355556667776 578778999888877666533 3442 11111122222 22221 13468988
Q ss_pred eeCCCCCChHhHHHHHHhccCCCeEEEEe
Q 047386 199 DLDPYGSPSVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 199 dLDPyGs~~~fld~A~~~l~~gGlL~vTa 227 (581)
+ |.-+.. ..+..++++++.+|-++..+
T Consensus 261 l-d~vg~~-~~~~~~~~~l~~~G~~v~~g 287 (367)
T cd08263 261 V-EALGKP-ETFKLALDVVRDGGRAVVVG 287 (367)
T ss_pred E-EeCCCH-HHHHHHHHHHhcCCEEEEEc
Confidence 6 775542 36777899999999876653
No 411
>PF14056 DUF4250: Domain of unknown function (DUF4250)
Probab=41.49 E-value=45 Score=26.87 Aligned_cols=43 Identities=21% Similarity=0.395 Sum_probs=32.2
Q ss_pred HHHHHHhhCCCCCceeeHHHHhhhcCCCCCCHHHHHHHHHHCCceEEe
Q 047386 399 VLTTISEELPDVPLFLSLHNLCSTLKCTSPSAVMFRSAVINAGYRVSG 446 (581)
Q Consensus 399 lL~~~~eEl~~~P~yy~l~~l~~~lk~~~P~~~~~~~aL~~~GY~aSr 446 (581)
+|+.+..-|.+ .|-++++||..+.++ ...+.+.|...||.=..
T Consensus 8 LlS~VN~kLRD--~~~sLd~Lc~~~~id---~~~l~~kL~~~Gy~Y~~ 50 (55)
T PF14056_consen 8 LLSIVNMKLRD--EYSSLDELCYDYDID---KEELEEKLASIGYEYDE 50 (55)
T ss_pred HHHHHHHHHHh--ccCCHHHHHHHhCCC---HHHHHHHHHHcCCeEch
Confidence 44445444533 577999999998774 78999999999997543
No 412
>COG2331 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.46 E-value=8.8 Score=32.88 Aligned_cols=12 Identities=33% Similarity=1.032 Sum_probs=9.7
Q ss_pred eEEEEcCCCCce
Q 047386 311 SYVYQCIGCDSF 322 (581)
Q Consensus 311 g~v~~C~~C~~~ 322 (581)
-|.|.|..||+.
T Consensus 10 tY~Y~c~~cg~~ 21 (82)
T COG2331 10 TYSYECTECGNR 21 (82)
T ss_pred ceEEeecccchH
Confidence 478899999864
No 413
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=41.32 E-value=1.4e+02 Score=29.01 Aligned_cols=97 Identities=24% Similarity=0.286 Sum_probs=57.6
Q ss_pred CCCeEEEecCc-ccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHH-HHhhCCCcccEE
Q 047386 121 KPPRVLEALSA-SGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARV-YMLTHPKEFDVV 198 (581)
Q Consensus 121 ~~~~VLDafsg-SG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~-~l~~~~~~fDvI 198 (581)
.+.+||..-+| .|...+++++. .| .+|++.+.++...+.+++. +.. ..+.....+... ++......+|+|
T Consensus 134 ~~~~vli~g~~~~G~~~~~~a~~-~g-~~v~~~~~~~~~~~~~~~~----g~~--~~~~~~~~~~~~~~~~~~~~~~d~v 205 (271)
T cd05188 134 PGDTVLVLGAGGVGLLAAQLAKA-AG-ARVIVTDRSDEKLELAKEL----GAD--HVIDYKEEDLEEELRLTGGGGADVV 205 (271)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH-cC-CeEEEEcCCHHHHHHHHHh----CCc--eeccCCcCCHHHHHHHhcCCCCCEE
Confidence 35577765555 46677777876 36 5799999998887776432 321 111111112111 111224569998
Q ss_pred eeCCCCCChHhHHHHHHhccCCCeEEEEe
Q 047386 199 DLDPYGSPSVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 199 dLDPyGs~~~fld~A~~~l~~gGlL~vTa 227 (581)
+ |.-+. ...+..++++++++|.++...
T Consensus 206 i-~~~~~-~~~~~~~~~~l~~~G~~v~~~ 232 (271)
T cd05188 206 I-DAVGG-PETLAQALRLLRPGGRIVVVG 232 (271)
T ss_pred E-ECCCC-HHHHHHHHHhcccCCEEEEEc
Confidence 6 44333 256777889999999887654
No 414
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=41.12 E-value=77 Score=33.23 Aligned_cols=100 Identities=20% Similarity=0.140 Sum_probs=61.2
Q ss_pred CCCeEEEecCcccHHHHHHhhhcCC-ccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhh--CCCcccE
Q 047386 121 KPPRVLEALSASGLRALRYAREVEG-IGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLT--HPKEFDV 197 (581)
Q Consensus 121 ~~~~VLDafsgSG~rgIr~a~E~~G-a~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~--~~~~fDv 197 (581)
.+.+||=+-|+||.-=-+..- +-| -..|+|++.|+.+=..+. |+.. .- .+|.++-.||+.--.. .-.-.|+
T Consensus 156 pGsKVLYLGAasGttVSHvSD-iVGpeG~VYAVEfs~rsGRdL~-nmAk-kR---tNiiPIiEDArhP~KYRmlVgmVDv 229 (317)
T KOG1596|consen 156 PGSKVLYLGAASGTTVSHVSD-IVGPEGCVYAVEFSHRSGRDLI-NMAK-KR---TNIIPIIEDARHPAKYRMLVGMVDV 229 (317)
T ss_pred CCceEEEeeccCCceeehhhc-ccCCCceEEEEEecccchHHHH-HHhh-cc---CCceeeeccCCCchheeeeeeeEEE
Confidence 466899999999864333332 222 346999999998876553 3321 11 3677888998643211 1124699
Q ss_pred EeeCCC--CCChHhHHHHHHhccCCCeEEEE
Q 047386 198 VDLDPY--GSPSVFLDSAIQSVADGGMLMCT 226 (581)
Q Consensus 198 IdLDPy--Gs~~~fld~A~~~l~~gGlL~vT 226 (581)
||.|=. -........|-..|++||-+.++
T Consensus 230 IFaDvaqpdq~RivaLNA~~FLk~gGhfvis 260 (317)
T KOG1596|consen 230 IFADVAQPDQARIVALNAQYFLKNGGHFVIS 260 (317)
T ss_pred EeccCCCchhhhhhhhhhhhhhccCCeEEEE
Confidence 999952 22222223345569999987775
No 415
>COG1321 TroR Mn-dependent transcriptional regulator [Transcription]
Probab=41.05 E-value=39 Score=32.41 Aligned_cols=73 Identities=19% Similarity=0.140 Sum_probs=52.4
Q ss_pred HHHHHHHHHHhhCCCCCceeeHHHHhhhcCCCCCCHHHHHHHHHHCCceEEecccCCCccc-cCCCHHHHHHHHHHHH
Q 047386 395 RISAVLTTISEELPDVPLFLSLHNLCSTLKCTSPSAVMFRSAVINAGYRVSGTHVNPLGLK-TDAPMGVIWDIMRCWV 471 (581)
Q Consensus 395 ri~~lL~~~~eEl~~~P~yy~l~~l~~~lk~~~P~~~~~~~aL~~~GY~aSrTH~~p~~iK-TdAP~~~i~di~r~w~ 471 (581)
++...|.+|..=. ..-.|-.+.+||+.|++++|+..+++.-|.+.||-- |-.-.|++ |+.--.....++|...
T Consensus 7 ~~edYL~~Iy~l~-~~~~~~~~~diA~~L~Vsp~sVt~ml~rL~~~GlV~---~~~y~gi~LT~~G~~~a~~~~r~hr 80 (154)
T COG1321 7 TEEDYLETIYELL-EEKGFARTKDIAERLKVSPPSVTEMLKRLERLGLVE---YEPYGGVTLTEKGREKAKELLRKHR 80 (154)
T ss_pred HHHHHHHHHHHHH-hccCcccHHHHHHHhCCCcHHHHHHHHHHHHCCCeE---EecCCCeEEChhhHHHHHHHHHHHH
Confidence 4455555554322 134678899999999999999999999999999964 32334443 6677777777777653
No 416
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=41.04 E-value=1.5e+02 Score=32.89 Aligned_cols=76 Identities=24% Similarity=0.236 Sum_probs=45.1
Q ss_pred EEEecCccc------HHHHHHh-hhcCCccEEEEEeCCHH---HHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCc
Q 047386 125 VLEALSASG------LRALRYA-REVEGIGQVVALDNDKA---SVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKE 194 (581)
Q Consensus 125 VLDafsgSG------~rgIr~a-~E~~Ga~~V~anD~s~~---Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~ 194 (581)
+|=.-.|+| .++.+++ . .+-.+|..+|.|+. |++.++...+..++.. .+.....|....|... ..
T Consensus 225 ~~vGptGvGKTTt~~kLA~~~~~~--~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~--~~~~~~~~l~~~l~~~-~~ 299 (424)
T PRK05703 225 ALVGPTGVGKTTTLAKLAARYALL--YGKKKVALITLDTYRIGAVEQLKTYAKIMGIPV--EVVYDPKELAKALEQL-RD 299 (424)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHh--cCCCeEEEEECCccHHHHHHHHHHHHHHhCCce--EccCCHHhHHHHHHHh-CC
Confidence 333445666 2444554 2 24468999999985 6777888778777751 1111122333444433 36
Q ss_pred ccEEeeCCCCC
Q 047386 195 FDVVDLDPYGS 205 (581)
Q Consensus 195 fDvIdLDPyGs 205 (581)
||+|++|-.|.
T Consensus 300 ~DlVlIDt~G~ 310 (424)
T PRK05703 300 CDVILIDTAGR 310 (424)
T ss_pred CCEEEEeCCCC
Confidence 99999997665
No 417
>COG0375 HybF Zn finger protein HypA/HybF (possibly regulating hydrogenase expression) [General function prediction only]
Probab=40.77 E-value=86 Score=28.98 Aligned_cols=22 Identities=27% Similarity=0.493 Sum_probs=15.6
Q ss_pred chhhhH-HHHHHHHHHHHHHcCC
Q 047386 255 CHEMAL-RILLACIESHANRYKR 276 (581)
Q Consensus 255 ~hE~~l-Rill~~i~~~Aa~~~r 276 (581)
.||+++ .-++..+.+.|.+++.
T Consensus 1 MHE~Sla~aii~~i~~~A~~~~a 23 (115)
T COG0375 1 MHELSLAQAIIELIEEQAEKHGA 23 (115)
T ss_pred CcHHHHHHHHHHHHHHHHHHcCC
Confidence 366665 3567778888888884
No 418
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=40.64 E-value=2.7e+02 Score=28.95 Aligned_cols=97 Identities=25% Similarity=0.282 Sum_probs=56.5
Q ss_pred CCCeEEEe-cCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehh----HHHHHhh-CCCc
Q 047386 121 KPPRVLEA-LSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLAD----ARVYMLT-HPKE 194 (581)
Q Consensus 121 ~~~~VLDa-fsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~D----A~~~l~~-~~~~ 194 (581)
.+.+||-. -++.|...+++|+. .|+..|++.+.++.-.+.+++ + +.+ ..+.....+ +..+... .+..
T Consensus 162 ~g~~vlI~g~g~vG~~a~~lak~-~G~~~v~~~~~~~~~~~~~~~-~---g~~--~vi~~~~~~~~~~~~~~~~~~~~~~ 234 (343)
T cd05285 162 PGDTVLVFGAGPIGLLTAAVAKA-FGATKVVVTDIDPSRLEFAKE-L---GAT--HTVNVRTEDTPESAEKIAELLGGKG 234 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH-cCCcEEEEECCCHHHHHHHHH-c---CCc--EEeccccccchhHHHHHHHHhCCCC
Confidence 34555552 23346666777776 577778999888776666643 2 432 111111122 2223222 1345
Q ss_pred ccEEeeCCCCCChHhHHHHHHhccCCCeEEEE
Q 047386 195 FDVVDLDPYGSPSVFLDSAIQSVADGGMLMCT 226 (581)
Q Consensus 195 fDvIdLDPyGs~~~fld~A~~~l~~gGlL~vT 226 (581)
||+| +|..|+ ..++..++++++.+|-++..
T Consensus 235 ~d~v-ld~~g~-~~~~~~~~~~l~~~G~~v~~ 264 (343)
T cd05285 235 PDVV-IECTGA-ESCIQTAIYATRPGGTVVLV 264 (343)
T ss_pred CCEE-EECCCC-HHHHHHHHHHhhcCCEEEEE
Confidence 8976 566664 24788889999999987654
No 419
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=40.59 E-value=1e+02 Score=32.09 Aligned_cols=64 Identities=23% Similarity=0.295 Sum_probs=41.0
Q ss_pred HHHHHhhhcCCccEEEEEeCCH---HHHHHHHHHHHHhCCCCCCcEEEEe--hhHHHHHhhCCCcccEEeeCCCC
Q 047386 135 RALRYAREVEGIGQVVALDNDK---ASVEACRRNIKFNGSVACSKVESHL--ADARVYMLTHPKEFDVVDLDPYG 204 (581)
Q Consensus 135 rgIr~a~E~~Ga~~V~anD~s~---~Ave~i~~Ni~~N~~~~~~~v~v~~--~DA~~~l~~~~~~fDvIdLDPyG 204 (581)
++.+++.. .|-.+|..++.|+ .|++.++......++. +.+.. .+....+... ..||+|++|-.|
T Consensus 214 La~~~~~~-~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p----~~~~~~~~~l~~~l~~~-~~~d~vliDt~G 282 (282)
T TIGR03499 214 LAARFVLE-HGNKKVALITTDTYRIGAVEQLKTYAKILGVP----VKVARDPKELRKALDRL-RDKDLILIDTAG 282 (282)
T ss_pred HHHHHHHH-cCCCeEEEEECCccchhHHHHHHHHHHHhCCc----eeccCCHHHHHHHHHHc-cCCCEEEEeCCC
Confidence 44455442 1446799999998 4788888888887775 22222 2344445444 358999999765
No 420
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=40.53 E-value=18 Score=25.89 Aligned_cols=12 Identities=33% Similarity=1.041 Sum_probs=8.3
Q ss_pred CCcCCCCCCccc
Q 047386 349 PQLCSDCGKKFN 360 (581)
Q Consensus 349 ~~~C~~Cg~~~~ 360 (581)
+..|++||.++.
T Consensus 17 ~irC~~CG~RIl 28 (32)
T PF03604_consen 17 PIRCPECGHRIL 28 (32)
T ss_dssp TSSBSSSS-SEE
T ss_pred cEECCcCCCeEE
Confidence 358999998763
No 421
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=40.43 E-value=3.7e+02 Score=26.43 Aligned_cols=77 Identities=18% Similarity=0.168 Sum_probs=47.7
Q ss_pred CCCCeEEEecCcccHHHHHHhhhc--CCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHH------HHHhh-
Q 047386 120 LKPPRVLEALSASGLRALRYAREV--EGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADAR------VYMLT- 190 (581)
Q Consensus 120 ~~~~~VLDafsgSG~rgIr~a~E~--~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~------~~l~~- 190 (581)
+.+.+|| ...|+|..|...++.+ .|. +|++.|.++...+.+...++..+. ++.++..|+. .++..
T Consensus 8 ~~~k~vl-ItGa~g~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~i~~~~~----~~~~~~~D~~~~~~~~~~~~~~ 81 (255)
T PRK07523 8 LTGRRAL-VTGSSQGIGYALAEGLAQAGA-EVILNGRDPAKLAAAAESLKGQGL----SAHALAFDVTDHDAVRAAIDAF 81 (255)
T ss_pred CCCCEEE-EECCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCc----eEEEEEccCCCHHHHHHHHHHH
Confidence 4455666 6677888888876654 465 699999998877766666654432 3555655543 22221
Q ss_pred --CCCcccEEeeCC
Q 047386 191 --HPKEFDVVDLDP 202 (581)
Q Consensus 191 --~~~~fDvIdLDP 202 (581)
.-...|+|+.-.
T Consensus 82 ~~~~~~~d~li~~a 95 (255)
T PRK07523 82 EAEIGPIDILVNNA 95 (255)
T ss_pred HHhcCCCCEEEECC
Confidence 123578887654
No 422
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=40.24 E-value=3e+02 Score=29.40 Aligned_cols=117 Identities=13% Similarity=0.083 Sum_probs=65.7
Q ss_pred CcCCCCCCccccc-ccccccCCCCHHHHHHHHHHhhhcc--------c--CCCcHHHHHHHHHHHHhhCCCCCc-eeeHH
Q 047386 350 QLCSDCGKKFNMG-GPIWSGRIHDQEWVNSILGEVKSMK--------D--RYPAYDRISAVLTTISEELPDVPL-FLSLH 417 (581)
Q Consensus 350 ~~C~~Cg~~~~~~-GPlW~GpLhd~~fv~~ml~~~~~~~--------~--~~~t~~ri~~lL~~~~eEl~~~P~-yy~l~ 417 (581)
..|.+|+..-+-. ++.| .+ +.+-|-+.+..+.... . .....+++..++..|+++.++..+ -|+..
T Consensus 51 ~~C~FC~~~~~~~~~~~y--~l-s~eeI~e~~~~~~~~G~~~i~l~gG~~p~~~~~~~~~i~~~Ik~~~~~i~~~~~t~~ 127 (343)
T TIGR03551 51 GGCGFCAFRKRKGDADAY--LL-SLEEIAERAAEAWKAGATEVCIQGGIHPDLDGDFYLDILRAVKEEVPGMHIHAFSPM 127 (343)
T ss_pred cCCccCCCccCCCCCCcc--cC-CHHHHHHHHHHHHHCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCceEEecCHH
Confidence 4689997653322 2334 23 6655555555444321 1 112456788999999988544332 22222
Q ss_pred H---HhhhcCCCCCCHHHHHHHHHHCCceE----EecccCCCc---c-ccCCCHHHHHHHHHHHHH
Q 047386 418 N---LCSTLKCTSPSAVMFRSAVINAGYRV----SGTHVNPLG---L-KTDAPMGVIWDIMRCWVK 472 (581)
Q Consensus 418 ~---l~~~lk~~~P~~~~~~~aL~~~GY~a----SrTH~~p~~---i-KTdAP~~~i~di~r~w~~ 472 (581)
+ ++..++.. ..+.+..|+++|... +...+++.- | +++.+.+..+++++...+
T Consensus 128 ei~~~~~~~g~~---~~e~l~~LkeAGl~~i~~~~~E~~~~~v~~~i~~~~~~~~~~~~~i~~a~~ 190 (343)
T TIGR03551 128 EVYYGARNSGLS---VEEALKRLKEAGLDSMPGTAAEILDDEVRKVICPDKLSTAEWIEIIKTAHK 190 (343)
T ss_pred HHHHHHHHcCCC---HHHHHHHHHHhCcccccCcchhhcCHHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence 2 34444443 468899999999872 223333322 2 335678877888877654
No 423
>PRK05855 short chain dehydrogenase; Validated
Probab=40.04 E-value=5.5e+02 Score=28.40 Aligned_cols=78 Identities=22% Similarity=0.138 Sum_probs=50.5
Q ss_pred CCCCCeEEEecCcccHHHHHHhhhc--CCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHH------HHhh
Q 047386 119 QLKPPRVLEALSASGLRALRYAREV--EGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARV------YMLT 190 (581)
Q Consensus 119 ~~~~~~VLDafsgSG~rgIr~a~E~--~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~------~l~~ 190 (581)
.+.+.++| +..|||.+|...++++ .|. +|++.+.+....+.+...++..+. .+.++..|+.. ++..
T Consensus 312 ~~~~~~~l-v~G~s~giG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~----~~~~~~~Dv~~~~~~~~~~~~ 385 (582)
T PRK05855 312 PFSGKLVV-VTGAGSGIGRETALAFAREGA-EVVASDIDEAAAERTAELIRAAGA----VAHAYRVDVSDADAMEAFAEW 385 (582)
T ss_pred cCCCCEEE-EECCcCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC----eEEEEEcCCCCHHHHHHHHHH
Confidence 45555665 7889999999887765 465 499999999887777666655442 35666666532 1211
Q ss_pred ---CCCcccEEeeCC
Q 047386 191 ---HPKEFDVVDLDP 202 (581)
Q Consensus 191 ---~~~~fDvIdLDP 202 (581)
.-...|+|+.-.
T Consensus 386 ~~~~~g~id~lv~~A 400 (582)
T PRK05855 386 VRAEHGVPDIVVNNA 400 (582)
T ss_pred HHHhcCCCcEEEECC
Confidence 123578876543
No 424
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=39.83 E-value=35 Score=38.75 Aligned_cols=15 Identities=27% Similarity=0.600 Sum_probs=10.5
Q ss_pred ccceEEEEcCCCCce
Q 047386 308 LKLSYVYQCIGCDSF 322 (581)
Q Consensus 308 ~k~g~v~~C~~C~~~ 322 (581)
..-|++..|+.|+..
T Consensus 217 ~~Cg~~~~C~~C~~~ 231 (505)
T TIGR00595 217 RSCGYILCCPNCDVS 231 (505)
T ss_pred hhCcCccCCCCCCCc
Confidence 456777788888753
No 425
>smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation.
Probab=39.82 E-value=44 Score=27.94 Aligned_cols=50 Identities=28% Similarity=0.331 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHhhCCCCCceeeHHHHhhhcCCCCCCHHHHHHHHHHCCceEEe
Q 047386 393 YDRISAVLTTISEELPDVPLFLSLHNLCSTLKCTSPSAVMFRSAVINAGYRVSG 446 (581)
Q Consensus 393 ~~ri~~lL~~~~eEl~~~P~yy~l~~l~~~lk~~~P~~~~~~~aL~~~GY~aSr 446 (581)
-.|...+|..+.+. +-..++.+||..++++.+....++..|.+.||=...
T Consensus 4 ~~r~~~Il~~l~~~----~~~~t~~~ia~~l~i~~~tv~r~l~~L~~~g~l~~~ 53 (91)
T smart00346 4 LERGLAVLRALAEE----PGGLTLAELAERLGLSKSTAHRLLNTLQELGYVEQD 53 (91)
T ss_pred HHHHHHHHHHHHhC----CCCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCeeec
Confidence 35778888887642 124889999999999999999999999999998764
No 426
>smart00420 HTH_DEOR helix_turn_helix, Deoxyribose operon repressor.
Probab=39.81 E-value=41 Score=24.74 Aligned_cols=41 Identities=12% Similarity=0.129 Sum_probs=33.1
Q ss_pred HHHHHHHhhCCCCCceeeHHHHhhhcCCCCCCHHHHHHHHHHCCce
Q 047386 398 AVLTTISEELPDVPLFLSLHNLCSTLKCTSPSAVMFRSAVINAGYR 443 (581)
Q Consensus 398 ~lL~~~~eEl~~~P~yy~l~~l~~~lk~~~P~~~~~~~aL~~~GY~ 443 (581)
.+|..+.++ + ..++.+|+..++++.+.....+..|...||=
T Consensus 4 ~il~~l~~~----~-~~s~~~l~~~l~~s~~tv~~~l~~L~~~g~i 44 (53)
T smart00420 4 QILELLAQQ----G-KVSVEELAELLGVSEMTIRRDLNKLEEQGLL 44 (53)
T ss_pred HHHHHHHHc----C-CcCHHHHHHHHCCCHHHHHHHHHHHHHCCCE
Confidence 455555442 1 3799999999999999999999999999994
No 427
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=39.34 E-value=2.4e+02 Score=29.08 Aligned_cols=95 Identities=24% Similarity=0.253 Sum_probs=54.0
Q ss_pred CCeEEE-ecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhh--CCCcccEE
Q 047386 122 PPRVLE-ALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLT--HPKEFDVV 198 (581)
Q Consensus 122 ~~~VLD-afsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~--~~~~fDvI 198 (581)
+.+||= +-++.|...+++|+. .|+..|++.+.++.-.+.+++ .|.. .+.....|....+.. ....+|+|
T Consensus 168 ~~~vlI~g~g~vg~~~~~~a~~-~g~~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~l~~~~~~~~~dvv 239 (344)
T cd08284 168 GDTVAVIGCGPVGLCAVLSAQV-LGAARVFAVDPVPERLERAAA----LGAE---PINFEDAEPVERVREATEGRGADVV 239 (344)
T ss_pred CCEEEEECCcHHHHHHHHHHHH-cCCceEEEEcCCHHHHHHHHH----hCCe---EEecCCcCHHHHHHHHhCCCCCCEE
Confidence 444443 333444445667776 577678888888877666543 2321 111112222222221 13468855
Q ss_pred eeCCCCCChHhHHHHHHhccCCCeEEEE
Q 047386 199 DLDPYGSPSVFLDSAIQSVADGGMLMCT 226 (581)
Q Consensus 199 dLDPyGs~~~fld~A~~~l~~gGlL~vT 226 (581)
+|..|. ...+..++++++.+|.+...
T Consensus 240 -id~~~~-~~~~~~~~~~l~~~g~~v~~ 265 (344)
T cd08284 240 -LEAVGG-AAALDLAFDLVRPGGVISSV 265 (344)
T ss_pred -EECCCC-HHHHHHHHHhcccCCEEEEE
Confidence 677654 35678889999999987654
No 428
>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family. The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....
Probab=39.34 E-value=18 Score=29.13 Aligned_cols=32 Identities=9% Similarity=0.186 Sum_probs=28.6
Q ss_pred eeeHHHHhhhcCCCCCCHHHHHHHHHHCCceE
Q 047386 413 FLSLHNLCSTLKCTSPSAVMFRSAVINAGYRV 444 (581)
Q Consensus 413 yy~l~~l~~~lk~~~P~~~~~~~aL~~~GY~a 444 (581)
..+..+||..|++++|+...++..|.+.||-.
T Consensus 22 ~v~~~~iA~~L~vs~~tvt~ml~~L~~~GlV~ 53 (60)
T PF01325_consen 22 PVRTKDIAERLGVSPPTVTEMLKRLAEKGLVE 53 (60)
T ss_dssp SBBHHHHHHHHTS-HHHHHHHHHHHHHTTSEE
T ss_pred CccHHHHHHHHCCChHHHHHHHHHHHHCCCEE
Confidence 47889999999999999999999999999954
No 429
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=39.33 E-value=25 Score=32.96 Aligned_cols=15 Identities=20% Similarity=0.414 Sum_probs=10.9
Q ss_pred cceEEEEcCCCCcee
Q 047386 309 KLSYVYQCIGCDSFH 323 (581)
Q Consensus 309 k~g~v~~C~~C~~~~ 323 (581)
..-..+.|..||..+
T Consensus 66 ~~p~~~~C~~CG~~~ 80 (135)
T PRK03824 66 EEEAVLKCRNCGNEW 80 (135)
T ss_pred ecceEEECCCCCCEE
Confidence 344678999999643
No 430
>PF01780 Ribosomal_L37ae: Ribosomal L37ae protein family; InterPro: IPR002674 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This ribosomal protein is found in archaebacteria and eukaryotes []. Ribosomal protein L37 has a single zinc finger-like motif of the C2-C2 type [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1E_Y 4A17_Y 4A1C_Y 4A1A_Y 3O58_g 3IZS_m 3O5H_g 1S1I_9 3IZR_m 1YSH_D ....
Probab=39.14 E-value=16 Score=32.31 Aligned_cols=51 Identities=27% Similarity=0.532 Sum_probs=30.3
Q ss_pred EEEcCCCCceeEeeccccccCCCCcccccCCCCCCCCCcCCCCCCcccccccccccCCCCHHHHHHHHHHh
Q 047386 313 VYQCIGCDSFHLQPVGRTASNKNNSVRYLPGFGPVVPQLCSDCGKKFNMGGPIWSGRIHDQEWVNSILGEV 383 (581)
Q Consensus 313 v~~C~~C~~~~~q~lgr~~~~~~~~~~~~~~~~~~~~~~C~~Cg~~~~~~GPlW~GpLhd~~fv~~ml~~~ 383 (581)
-|.|+.||...+- |.. .| --.|..||..+ +|=-|.=...-...+.+.+..+
T Consensus 35 ky~Cp~Cgk~~vk---R~a------------~G---IW~C~~C~~~~--AGGAy~~~T~~~~t~~~~i~rl 85 (90)
T PF01780_consen 35 KYTCPFCGKTSVK---RVA------------TG---IWKCKKCGKKF--AGGAYTPSTPAAKTVKRAIRRL 85 (90)
T ss_dssp -BEESSSSSSEEE---EEE------------TT---EEEETTTTEEE--E-BSSSSS-HHHHHHHHHHHHH
T ss_pred CCcCCCCCCceeE---Eee------------eE---EeecCCCCCEE--eCCCccccchHHHHHHHHHHHH
Confidence 3689999865432 221 11 14699999654 7888877766666666665544
No 431
>COG0846 SIR2 NAD-dependent protein deacetylases, SIR2 family [Transcription]
Probab=39.09 E-value=44 Score=34.67 Aligned_cols=36 Identities=19% Similarity=0.466 Sum_probs=27.9
Q ss_pred CcCCCCCCcccccccccccCCCCHHHHHHHHHHhhh
Q 047386 350 QLCSDCGKKFNMGGPIWSGRIHDQEWVNSILGEVKS 385 (581)
Q Consensus 350 ~~C~~Cg~~~~~~GPlW~GpLhd~~fv~~ml~~~~~ 385 (581)
..|+.||+...==+=.|=|..++.+|.+..++.++.
T Consensus 147 p~C~~Cg~~~lrP~VV~fGE~lp~~~~~~~~~~~~~ 182 (250)
T COG0846 147 PRCPKCGGPVLRPDVVWFGEPLPASFLDEALEALKE 182 (250)
T ss_pred CcCccCCCccccCCEEEeCCCCCHHHHHHHHHHhcc
Confidence 469999984322455799999999999888887743
No 432
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=39.07 E-value=16 Score=33.30 Aligned_cols=35 Identities=23% Similarity=0.594 Sum_probs=23.3
Q ss_pred cceEEEEcCCCCceeEeeccccccCCCCcccccCCCCCCCCCcCCCCCCccccc
Q 047386 309 KLSYVYQCIGCDSFHLQPVGRTASNKNNSVRYLPGFGPVVPQLCSDCGKKFNMG 362 (581)
Q Consensus 309 k~g~v~~C~~C~~~~~q~lgr~~~~~~~~~~~~~~~~~~~~~~C~~Cg~~~~~~ 362 (581)
.+|.=..|+.||.... -|+| .+..||.||..+.+.
T Consensus 5 elGtKR~Cp~CG~kFY-DLnk------------------~PivCP~CG~~~~~~ 39 (108)
T PF09538_consen 5 ELGTKRTCPSCGAKFY-DLNK------------------DPIVCPKCGTEFPPE 39 (108)
T ss_pred ccCCcccCCCCcchhc-cCCC------------------CCccCCCCCCccCcc
Confidence 4777788999985211 1111 235699999988766
No 433
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=38.74 E-value=18 Score=33.20 Aligned_cols=11 Identities=18% Similarity=0.776 Sum_probs=9.3
Q ss_pred cCCCCCCcccc
Q 047386 351 LCSDCGKKFNM 361 (581)
Q Consensus 351 ~C~~Cg~~~~~ 361 (581)
.|.||+.++++
T Consensus 87 ~CM~C~~pLTL 97 (114)
T PF11023_consen 87 ACMHCKEPLTL 97 (114)
T ss_pred ccCcCCCcCcc
Confidence 69999998874
No 434
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=38.61 E-value=1.7e+02 Score=30.41 Aligned_cols=96 Identities=24% Similarity=0.263 Sum_probs=55.8
Q ss_pred CCeEEEe-cCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhH-HHHHhhCCCcccEEe
Q 047386 122 PPRVLEA-LSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADA-RVYMLTHPKEFDVVD 199 (581)
Q Consensus 122 ~~~VLDa-fsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA-~~~l~~~~~~fDvId 199 (581)
+.+||-. -++.|...+.+|+. .|++.|++.+.++.-.+.+++ .|+. .-+.....+. ..+.......+|+|+
T Consensus 176 ~~~vlI~g~g~vg~~~~~~a~~-~G~~~v~~~~~~~~~~~~~~~----~g~~--~~~~~~~~~~~~~~~~~~~~~~d~vi 248 (350)
T cd08240 176 DEPVVIIGAGGLGLMALALLKA-LGPANIIVVDIDEAKLEAAKA----AGAD--VVVNGSDPDAAKRIIKAAGGGVDAVI 248 (350)
T ss_pred CCEEEEECCcHHHHHHHHHHHH-cCCCeEEEEeCCHHHHHHHHH----hCCc--EEecCCCccHHHHHHHHhCCCCcEEE
Confidence 4455553 33344555566776 488889999988877666632 3442 1111111121 122221122688886
Q ss_pred eCCCCCChHhHHHHHHhccCCCeEEEE
Q 047386 200 LDPYGSPSVFLDSAIQSVADGGMLMCT 226 (581)
Q Consensus 200 LDPyGs~~~fld~A~~~l~~gGlL~vT 226 (581)
|..|.. ..++.+++++..+|.+...
T Consensus 249 -d~~g~~-~~~~~~~~~l~~~g~~v~~ 273 (350)
T cd08240 249 -DFVNNS-ATASLAFDILAKGGKLVLV 273 (350)
T ss_pred -ECCCCH-HHHHHHHHHhhcCCeEEEE
Confidence 776643 5688889999999987754
No 435
>cd00090 HTH_ARSR Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.
Probab=38.54 E-value=59 Score=25.09 Aligned_cols=56 Identities=11% Similarity=0.091 Sum_probs=42.2
Q ss_pred eeHHHHhhhcCCCCCCHHHHHHHHHHCCceEEecccCCCccccCCCHHHHHHHHHHH
Q 047386 414 LSLHNLCSTLKCTSPSAVMFRSAVINAGYRVSGTHVNPLGLKTDAPMGVIWDIMRCW 470 (581)
Q Consensus 414 y~l~~l~~~lk~~~P~~~~~~~aL~~~GY~aSrTH~~p~~iKTdAP~~~i~di~r~w 470 (581)
.+..+|+..++++.+.+...+..|.+.||-....+..+.-++.+. -..+++.++.+
T Consensus 21 ~~~~ei~~~~~i~~~~i~~~l~~L~~~g~i~~~~~~~~~~~~~~~-g~~~~~~~~~~ 76 (78)
T cd00090 21 LTVSELAERLGLSQSTVSRHLKKLEEAGLVESRREGRRVYYSLTD-AERLLALLESL 76 (78)
T ss_pred cCHHHHHHHHCcCHhHHHHHHHHHHHCCCeEEEEeccEEEEEeCC-chHHHHHHHHh
Confidence 778999999999999999999999999998776554344444443 45666666543
No 436
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=38.48 E-value=2.3e+02 Score=29.41 Aligned_cols=97 Identities=23% Similarity=0.289 Sum_probs=55.3
Q ss_pred CCCeEEE-ecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhh--CCCcccE
Q 047386 121 KPPRVLE-ALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLT--HPKEFDV 197 (581)
Q Consensus 121 ~~~~VLD-afsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~--~~~~fDv 197 (581)
.+.+||- +-++.|...+.+|+. .|++.|++.+.++...+.+++ .++. .-+.....+...-+.. ..+.||+
T Consensus 161 ~g~~vlI~~~g~vg~~a~~la~~-~G~~~v~~~~~~~~~~~~~~~----~g~~--~~v~~~~~~~~~~l~~~~~~~~~d~ 233 (340)
T TIGR00692 161 SGKSVLVTGAGPIGLMAIAVAKA-SGAYPVIVSDPNEYRLELAKK----MGAT--YVVNPFKEDVVKEVADLTDGEGVDV 233 (340)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH-cCCcEEEEECCCHHHHHHHHH----hCCc--EEEcccccCHHHHHHHhcCCCCCCE
Confidence 3455554 323345566667776 477768888888877766643 2432 1111222333332222 2346888
Q ss_pred EeeCCCCCChHhHHHHHHhccCCCeEEEE
Q 047386 198 VDLDPYGSPSVFLDSAIQSVADGGMLMCT 226 (581)
Q Consensus 198 IdLDPyGs~~~fld~A~~~l~~gGlL~vT 226 (581)
| +|..|. ...++.++++++.+|.++..
T Consensus 234 v-ld~~g~-~~~~~~~~~~l~~~g~~v~~ 260 (340)
T TIGR00692 234 F-LEMSGA-PKALEQGLQAVTPGGRVSLL 260 (340)
T ss_pred E-EECCCC-HHHHHHHHHhhcCCCEEEEE
Confidence 7 555453 34567779999999987654
No 437
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=38.45 E-value=24 Score=25.68 Aligned_cols=34 Identities=26% Similarity=0.529 Sum_probs=19.4
Q ss_pred EEEcCCCCceeEeeccccccCCCCcccccCCCCCCCCCcCCCCCCcc
Q 047386 313 VYQCIGCDSFHLQPVGRTASNKNNSVRYLPGFGPVVPQLCSDCGKKF 359 (581)
Q Consensus 313 v~~C~~C~~~~~q~lgr~~~~~~~~~~~~~~~~~~~~~~C~~Cg~~~ 359 (581)
...|++|+..+..+-.+. |+.| ....|+.||..+
T Consensus 2 ~i~Cp~C~~~y~i~d~~i-----------p~~g--~~v~C~~C~~~f 35 (36)
T PF13717_consen 2 IITCPNCQAKYEIDDEKI-----------PPKG--RKVRCSKCGHVF 35 (36)
T ss_pred EEECCCCCCEEeCCHHHC-----------CCCC--cEEECCCCCCEe
Confidence 457999986543322221 1112 234799999765
No 438
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=38.37 E-value=2.7e+02 Score=26.36 Aligned_cols=74 Identities=16% Similarity=0.183 Sum_probs=43.1
Q ss_pred EEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEeeCCC--CC-ChHhHHHHHHhccCCCeEE
Q 047386 148 QVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDLDPY--GS-PSVFLDSAIQSVADGGMLM 224 (581)
Q Consensus 148 ~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdLDPy--Gs-~~~fld~A~~~l~~gGlL~ 224 (581)
+|..+|-++...+.++.-++..+.. +. ...+....+......||+|++|.- +. ...++. .++...+-.+++
T Consensus 3 ~ilivdd~~~~~~~l~~~l~~~~~~----v~-~~~~~~~~~~~~~~~~d~vl~d~~~~~~~g~~~~~-~l~~~~~~~ii~ 76 (232)
T PRK10955 3 KILLVDDDRELTSLLKELLEMEGFN----VI-VAHDGEQALDLLDDSIDLLLLDVMMPKKNGIDTLK-ELRQTHQTPVIM 76 (232)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCE----EE-EeCCHHHHHHHhhcCCCEEEEeCCCCCCcHHHHHH-HHHhcCCCcEEE
Confidence 5889999999999999988876652 22 233333333222236999999962 22 122222 233222345677
Q ss_pred EEe
Q 047386 225 CTA 227 (581)
Q Consensus 225 vTa 227 (581)
+|+
T Consensus 77 lt~ 79 (232)
T PRK10955 77 LTA 79 (232)
T ss_pred EEC
Confidence 765
No 439
>smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor.
Probab=38.31 E-value=59 Score=24.54 Aligned_cols=29 Identities=17% Similarity=0.105 Sum_probs=27.6
Q ss_pred eHHHHhhhcCCCCCCHHHHHHHHHHCCce
Q 047386 415 SLHNLCSTLKCTSPSAVMFRSAVINAGYR 443 (581)
Q Consensus 415 ~l~~l~~~lk~~~P~~~~~~~aL~~~GY~ 443 (581)
+..+||..++++.+++...+..|.+.|+=
T Consensus 22 s~~~la~~~~vs~~tv~~~l~~L~~~g~i 50 (60)
T smart00345 22 SERELAAQLGVSRTTVREALSRLEAEGLV 50 (60)
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCCE
Confidence 89999999999999999999999999993
No 440
>PRK05926 hypothetical protein; Provisional
Probab=38.07 E-value=1.9e+02 Score=31.64 Aligned_cols=77 Identities=13% Similarity=0.110 Sum_probs=51.3
Q ss_pred cHHHHHHHHHHHHhhCCCCCc-eeeHHHHhhhcCCCCCCHHHHHHHHHHCCceE------------EecccCCCccccCC
Q 047386 392 AYDRISAVLTTISEELPDVPL-FLSLHNLCSTLKCTSPSAVMFRSAVINAGYRV------------SGTHVNPLGLKTDA 458 (581)
Q Consensus 392 t~~ri~~lL~~~~eEl~~~P~-yy~l~~l~~~lk~~~P~~~~~~~aL~~~GY~a------------SrTH~~p~~iKTdA 458 (581)
..+++..++..|++++++.-. .++..+++...++.-.+..+.+..|+++|... ++.++.|...
T Consensus 129 ~~e~~~e~i~~Ik~~~p~i~i~a~s~~Ei~~~~~~~~~~~~e~l~~LkeAGl~~~~g~GaEi~~e~~r~~~~p~~~---- 204 (370)
T PRK05926 129 NLAYYEELFSKIKQNFPDLHIKALTAIEYAYLSKLDNLPVKEVLQTLKIAGLDSIPGGGAEILVDEIRETLAPGRL---- 204 (370)
T ss_pred CHHHHHHHHHHHHHhCCCeeEEECCHHHHHHHHhhcCCCHHHHHHHHHHcCcCccCCCCchhcCHHHHHhhCCCCC----
Confidence 356788999999998754322 35555666555555557889999999999842 1334556433
Q ss_pred CHHHHHHHHHHHHH
Q 047386 459 PMGVIWDIMRCWVK 472 (581)
Q Consensus 459 P~~~i~di~r~w~~ 472 (581)
+.++-+++++.+.+
T Consensus 205 t~~e~l~~i~~a~~ 218 (370)
T PRK05926 205 SSQGFLEIHKTAHS 218 (370)
T ss_pred CHHHHHHHHHHHHH
Confidence 45667788887754
No 441
>PRK06194 hypothetical protein; Provisional
Probab=37.79 E-value=1.2e+02 Score=30.66 Aligned_cols=58 Identities=17% Similarity=0.210 Sum_probs=39.0
Q ss_pred CCeEEEecCcccHHHHHHhhhc--CCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHH
Q 047386 122 PPRVLEALSASGLRALRYAREV--EGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADAR 185 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~--~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~ 185 (581)
+.+|| +..|+|..|...++++ .|+ +|++.|.+....+.+...+...+ .++.++.+|+.
T Consensus 6 ~k~vl-VtGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~D~~ 65 (287)
T PRK06194 6 GKVAV-ITGAASGFGLAFARIGAALGM-KLVLADVQQDALDRAVAELRAQG----AEVLGVRTDVS 65 (287)
T ss_pred CCEEE-EeCCccHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhcC----CeEEEEECCCC
Confidence 45677 8888998888877654 465 69999999877655544444333 24666777753
No 442
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=37.71 E-value=89 Score=34.45 Aligned_cols=105 Identities=19% Similarity=0.236 Sum_probs=59.8
Q ss_pred cCCCCCeEEEecCcccHHHHHHhhh-cCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhC--CCc
Q 047386 118 RQLKPPRVLEALSASGLRALRYARE-VEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTH--PKE 194 (581)
Q Consensus 118 ~~~~~~~VLDafsgSG~rgIr~a~E-~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~--~~~ 194 (581)
.+|.+.++||+-+|-|. |+-++.. .|..+.++.++.|+..-+.+ .-+..|-.. .+..--..|+..-.... ...
T Consensus 110 ~dfapqsiLDvG~GPgt-gl~A~n~i~Pdl~sa~ile~sp~lrkV~-~tl~~nv~t--~~td~r~s~vt~dRl~lp~ad~ 185 (484)
T COG5459 110 PDFAPQSILDVGAGPGT-GLWALNDIWPDLKSAVILEASPALRKVG-DTLAENVST--EKTDWRASDVTEDRLSLPAADL 185 (484)
T ss_pred CCcCcchhhccCCCCch-hhhhhcccCCCchhhhhhccCHHHHHHH-HHHHhhccc--ccCCCCCCccchhccCCCccce
Confidence 56788899999998775 3333332 26778899999998755443 233333221 11111112221111111 245
Q ss_pred ccEEe-eC---CCCCChH---hHHHHHHhccCCCeEEEE
Q 047386 195 FDVVD-LD---PYGSPSV---FLDSAIQSVADGGMLMCT 226 (581)
Q Consensus 195 fDvId-LD---PyGs~~~---fld~A~~~l~~gGlL~vT 226 (581)
|++|+ +| |-|+..| +++.-.+++.+||+|.|.
T Consensus 186 ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lViv 224 (484)
T COG5459 186 YTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIV 224 (484)
T ss_pred eehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEE
Confidence 66653 33 4455443 577888899999998874
No 443
>PRK05876 short chain dehydrogenase; Provisional
Probab=37.63 E-value=4.5e+02 Score=26.62 Aligned_cols=77 Identities=19% Similarity=0.177 Sum_probs=46.7
Q ss_pred CCCCeEEEecCcccHHHHHHhhhc--CCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHH------HHhh-
Q 047386 120 LKPPRVLEALSASGLRALRYAREV--EGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARV------YMLT- 190 (581)
Q Consensus 120 ~~~~~VLDafsgSG~rgIr~a~E~--~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~------~l~~- 190 (581)
+.+.++| +..|+|..|...+.++ .|+ +|++.|.++...+.+.+.++..+. ++.++..|+.. ++..
T Consensus 4 ~~~k~vl-VTGas~gIG~ala~~La~~G~-~Vv~~~r~~~~l~~~~~~l~~~~~----~~~~~~~Dv~d~~~v~~~~~~~ 77 (275)
T PRK05876 4 FPGRGAV-ITGGASGIGLATGTEFARRGA-RVVLGDVDKPGLRQAVNHLRAEGF----DVHGVMCDVRHREEVTHLADEA 77 (275)
T ss_pred cCCCEEE-EeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC----eEEEEeCCCCCHHHHHHHHHHH
Confidence 3455566 6677788887776554 466 589999998877766555554332 35666666532 2221
Q ss_pred --CCCcccEEeeCC
Q 047386 191 --HPKEFDVVDLDP 202 (581)
Q Consensus 191 --~~~~fDvIdLDP 202 (581)
.-...|+|+.-.
T Consensus 78 ~~~~g~id~li~nA 91 (275)
T PRK05876 78 FRLLGHVDVVFSNA 91 (275)
T ss_pred HHHcCCCCEEEECC
Confidence 113568887654
No 444
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=37.59 E-value=1.6e+02 Score=34.32 Aligned_cols=92 Identities=13% Similarity=0.201 Sum_probs=65.1
Q ss_pred cCCCCHHHHHHHHHHhhhcc-------cC--CCcHHHHHHHHHHHHhhCCCCCceeeHHH-----Hh-------------
Q 047386 368 GRIHDQEWVNSILGEVKSMK-------DR--YPAYDRISAVLTTISEELPDVPLFLSLHN-----LC------------- 420 (581)
Q Consensus 368 GpLhd~~fv~~ml~~~~~~~-------~~--~~t~~ri~~lL~~~~eEl~~~P~yy~l~~-----l~------------- 420 (581)
.|.|+.+|+-++.+.+.++. +. +.+..++..+++.+++++ +.|+.++.|. ++
T Consensus 148 sp~~t~e~~~~~ak~l~~~Gad~I~IkDtaG~l~P~~v~~lv~alk~~~-~ipi~~H~Hnt~Gla~an~laAieaGad~i 226 (596)
T PRK14042 148 SPVHTLDNFLELGKKLAEMGCDSIAIKDMAGLLTPTVTVELYAGLKQAT-GLPVHLHSHSTSGLASICHYEAVLAGCNHI 226 (596)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEeCCcccCCCHHHHHHHHHHHHhhc-CCEEEEEeCCCCCcHHHHHHHHHHhCCCEE
Confidence 46999999999988876532 12 335678999999999998 4888777662 11
Q ss_pred -----hhcCC-CCCCHHHHHHHHHHCCceEEecccCCCccccCCCHHHHHHHHHHHHH
Q 047386 421 -----STLKC-TSPSAVMFRSAVINAGYRVSGTHVNPLGLKTDAPMGVIWDIMRCWVK 472 (581)
Q Consensus 421 -----~~lk~-~~P~~~~~~~aL~~~GY~aSrTH~~p~~iKTdAP~~~i~di~r~w~~ 472 (581)
..-++ ..|++..++.+|...|| .|+-.++.|.++-+-|.+
T Consensus 227 D~ai~glGg~tGn~~tE~lv~~L~~~g~------------~tgidl~~l~~~~~~~~~ 272 (596)
T PRK14042 227 DTAISSFSGGASHPPTEALVAALTDTPY------------DTELDLNILLEIDDYFKA 272 (596)
T ss_pred EeccccccCCCCcHhHHHHHHHHHhcCC------------CCCCCHHHHHHHHHHHHH
Confidence 11222 47899999999987765 455666777777776653
No 445
>PRK14138 NAD-dependent deacetylase; Provisional
Probab=37.24 E-value=33 Score=35.15 Aligned_cols=35 Identities=14% Similarity=0.275 Sum_probs=24.3
Q ss_pred CcCCCCCCcccccccccccCCCCHHHHHHHHHHhhh
Q 047386 350 QLCSDCGKKFNMGGPIWSGRIHDQEWVNSILGEVKS 385 (581)
Q Consensus 350 ~~C~~Cg~~~~~~GPlW~GpLhd~~fv~~ml~~~~~ 385 (581)
..|+.||+.+.. +=+|-|.-.+..+++++.+.+.+
T Consensus 144 p~Cp~Cgg~lrP-~Vv~FgE~~p~~~~~~~~~~~~~ 178 (244)
T PRK14138 144 PRCDDCSGLIRP-NIVFFGEALPQDALREAIRLSSK 178 (244)
T ss_pred CCCCCCCCeECC-CEEECCCcCCHHHHHHHHHHHhc
Confidence 369999986652 22677777777788887766543
No 446
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=37.16 E-value=2.1e+02 Score=30.33 Aligned_cols=96 Identities=22% Similarity=0.267 Sum_probs=56.7
Q ss_pred CCeEEEe-cCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEe-hhHHH-HHhhCCCcccEE
Q 047386 122 PPRVLEA-LSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHL-ADARV-YMLTHPKEFDVV 198 (581)
Q Consensus 122 ~~~VLDa-fsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~-~DA~~-~l~~~~~~fDvI 198 (581)
+.+||=. -++.|...+.+|+. .|+..|++.|.++.-.+.+++ .+.+ .+-... .+... ++......||+|
T Consensus 187 g~~vlI~g~g~vG~~~~~la~~-~G~~~v~~~~~~~~k~~~~~~----~g~~---~~i~~~~~~~~~~v~~~~~~~~d~v 258 (365)
T cd08278 187 GSSIAVFGAGAVGLAAVMAAKI-AGCTTIIAVDIVDSRLELAKE----LGAT---HVINPKEEDLVAAIREITGGGVDYA 258 (365)
T ss_pred CCEEEEECCCHHHHHHHHHHHH-cCCCeEEEEeCCHHHHHHHHH----cCCc---EEecCCCcCHHHHHHHHhCCCCcEE
Confidence 4455544 23445566667776 588889999999887776643 2332 111111 12222 222123468877
Q ss_pred eeCCCCCChHhHHHHHHhccCCCeEEEEe
Q 047386 199 DLDPYGSPSVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 199 dLDPyGs~~~fld~A~~~l~~gGlL~vTa 227 (581)
+|--|.+ ..++.++++++.+|.+....
T Consensus 259 -ld~~g~~-~~~~~~~~~l~~~G~~v~~g 285 (365)
T cd08278 259 -LDTTGVP-AVIEQAVDALAPRGTLALVG 285 (365)
T ss_pred -EECCCCc-HHHHHHHHHhccCCEEEEeC
Confidence 4554442 56788899999999887654
No 447
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=37.07 E-value=94 Score=31.99 Aligned_cols=69 Identities=26% Similarity=0.275 Sum_probs=43.9
Q ss_pred CCccEEEEEeCCHH--HHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhh-----CCCcccEEeeCCCCCChHhHHHHHH
Q 047386 144 EGIGQVVALDNDKA--SVEACRRNIKFNGSVACSKVESHLADARVYMLT-----HPKEFDVVDLDPYGSPSVFLDSAIQ 215 (581)
Q Consensus 144 ~Ga~~V~anD~s~~--Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~-----~~~~fDvIdLDPyGs~~~fld~A~~ 215 (581)
+| .+|..+|.||. ..++ .+|...++.- .+.+.++..+-...+.. ....||+|++|=.|..+++.+.|+.
T Consensus 29 ~G-~~V~lIDaDpn~pl~~W-~~~a~~~~~~-~~~~~V~~~~e~~~l~~~~e~a~~~~~d~VlvDleG~as~~~~~aia 104 (231)
T PF07015_consen 29 RG-ARVALIDADPNQPLAKW-AENAQRPGAW-PDRIEVYEADELTILEDAYEAAEASGFDFVLVDLEGGASELNDYAIA 104 (231)
T ss_pred CC-CeEEEEeCCCCCcHHHH-HHhccccCCC-CCCeeEEeccchhhHHHHHHHHHhcCCCEEEEeCCCCCchhHHHHHH
Confidence 46 57999999985 3333 5555544422 14556655443322211 2346999999999998899998886
No 448
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=37.03 E-value=35 Score=35.88 Aligned_cols=16 Identities=56% Similarity=1.084 Sum_probs=14.9
Q ss_pred cccCCCCCCCCCCCCCCC
Q 047386 515 ARFLPNPEKHWGPKPRAG 532 (581)
Q Consensus 515 ~r~~~NP~~nWGPk~ra~ 532 (581)
|||+||| +|=|.-|..
T Consensus 186 VRfLPNP--~y~peLRp~ 201 (286)
T COG1660 186 VRFLPNP--HYDPELRPL 201 (286)
T ss_pred ecccCCC--ccccccCcC
Confidence 8999999 999999984
No 449
>COG1400 SEC65 Signal recognition particle 19 kDa protein [Intracellular trafficking and secretion]
Probab=36.83 E-value=23 Score=31.43 Aligned_cols=27 Identities=19% Similarity=0.218 Sum_probs=23.6
Q ss_pred HhhhcCCCCCCHHHHHHHHHHCCceEE
Q 047386 419 LCSTLKCTSPSAVMFRSAVINAGYRVS 445 (581)
Q Consensus 419 l~~~lk~~~P~~~~~~~aL~~~GY~aS 445 (581)
+.+.+-+..|++.+|.+||+++||...
T Consensus 23 vpk~laV~~P~~~ei~~a~~~LGl~~~ 49 (93)
T COG1400 23 VPKELAVENPSLEEIAEALRELGLKPK 49 (93)
T ss_pred cchhhcccCCCHHHHHHHHHHcCCCee
Confidence 456667889999999999999999986
No 450
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=36.64 E-value=54 Score=31.82 Aligned_cols=83 Identities=22% Similarity=0.131 Sum_probs=44.8
Q ss_pred CeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHH---HHHhhCCCcccEEe
Q 047386 123 PRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADAR---VYMLTHPKEFDVVD 199 (581)
Q Consensus 123 ~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~---~~l~~~~~~fDvId 199 (581)
.+|+-+-+=|--..|+-.. ..-..++..|+|..-... + ++ .+..-|-+ .+.......||+|+
T Consensus 27 ~~iaclstPsl~~~l~~~~--~~~~~~~Lle~D~RF~~~--------~----~~-~F~fyD~~~p~~~~~~l~~~~d~vv 91 (162)
T PF10237_consen 27 TRIACLSTPSLYEALKKES--KPRIQSFLLEYDRRFEQF--------G----GD-EFVFYDYNEPEELPEELKGKFDVVV 91 (162)
T ss_pred CEEEEEeCcHHHHHHHhhc--CCCccEEEEeecchHHhc--------C----Cc-ceEECCCCChhhhhhhcCCCceEEE
Confidence 4677777666666666522 133568999999654221 1 11 12222221 22222346899999
Q ss_pred eCCCCCChHhH---HHHHHhccCC
Q 047386 200 LDPYGSPSVFL---DSAIQSVADG 220 (581)
Q Consensus 200 LDPyGs~~~fl---d~A~~~l~~g 220 (581)
+||+-...+.+ ..+++.|...
T Consensus 92 ~DPPFl~~ec~~k~a~ti~~L~k~ 115 (162)
T PF10237_consen 92 IDPPFLSEECLTKTAETIRLLLKP 115 (162)
T ss_pred ECCCCCCHHHHHHHHHHHHHHhCc
Confidence 99954444443 3456666444
No 451
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=36.46 E-value=19 Score=40.01 Aligned_cols=63 Identities=14% Similarity=0.067 Sum_probs=34.3
Q ss_pred Ccee----eHHHH---hhhcCCCCC--------CHHHHHHHHHHCCceEE-----ecccCCCccccCCCH-----HHHHH
Q 047386 411 PLFL----SLHNL---CSTLKCTSP--------SAVMFRSAVINAGYRVS-----GTHVNPLGLKTDAPM-----GVIWD 465 (581)
Q Consensus 411 P~yy----~l~~l---~~~lk~~~P--------~~~~~~~aL~~~GY~aS-----rTH~~p~~iKTdAP~-----~~i~d 465 (581)
-+|. +++++ |.+|+++.+ .++.|+..|.+.-++.- .|-+.+. =|-||- -++-.
T Consensus 123 vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~~p~lvVIDSIQT~~s~~--~~SapGsVsQVRe~t~ 200 (456)
T COG1066 123 VLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELEQEKPDLVVIDSIQTLYSEE--ITSAPGSVSQVREVAA 200 (456)
T ss_pred EEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHHHhcCCCEEEEeccceeeccc--ccCCCCcHHHHHHHHH
Confidence 4565 44555 466765443 46778888887666543 2333332 133453 23444
Q ss_pred HHHHHHHhCC
Q 047386 466 IMRCWVKNHP 475 (581)
Q Consensus 466 i~r~w~~~~p 475 (581)
-|..|+|...
T Consensus 201 ~L~~~AK~~~ 210 (456)
T COG1066 201 ELMRLAKTKN 210 (456)
T ss_pred HHHHHHHHcC
Confidence 5667787665
No 452
>PRK08265 short chain dehydrogenase; Provisional
Probab=36.26 E-value=4.5e+02 Score=26.17 Aligned_cols=55 Identities=18% Similarity=0.213 Sum_probs=33.9
Q ss_pred CCeEEEecCcccHHHHHHhhhc--CCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHH
Q 047386 122 PPRVLEALSASGLRALRYAREV--EGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADAR 185 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~--~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~ 185 (581)
+.++| +..|||..|...+.++ .|+ .|++.|.++...+.+.+-+ + .++.++..|+.
T Consensus 6 ~k~vl-ItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~----~~~~~~~~Dl~ 62 (261)
T PRK08265 6 GKVAI-VTGGATLIGAAVARALVAAGA-RVAIVDIDADNGAAVAASL---G----ERARFIATDIT 62 (261)
T ss_pred CCEEE-EECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---C----CeeEEEEecCC
Confidence 44444 6677888888776654 466 7999999987554433322 2 24556666653
No 453
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=36.23 E-value=51 Score=37.33 Aligned_cols=90 Identities=20% Similarity=0.229 Sum_probs=59.8
Q ss_pred cHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhC------CCcccEEeeCCC---
Q 047386 133 GLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTH------PKEFDVVDLDPY--- 203 (581)
Q Consensus 133 G~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~------~~~fDvIdLDPy--- 203 (581)
|++.--.-..+ +-..|++++++|.+++..+.+..+-.- .+..++-.|...++.+. ...||+|..|==
T Consensus 307 G~l~sfl~~~~-p~~~i~~ve~dP~~l~va~q~f~f~q~---~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl~~dvds~d 382 (482)
T KOG2352|consen 307 GGLPSFLHMSL-PKFQITAVEIDPEMLEVATQYFGFMQS---DRNKVHIADGLDFLQRTAKSQQEDICPDVLMVDVDSKD 382 (482)
T ss_pred Cccccceeeec-CccceeEEEEChhHhhccHhhhchhhh---hhhhhhHhhchHHHHHHhhccccccCCcEEEEECCCCC
Confidence 55543332222 346799999999999999999987653 24567777888877542 357999866532
Q ss_pred --CC---ChHhH-----HHHHHhccCCCeEEEE
Q 047386 204 --GS---PSVFL-----DSAIQSVADGGMLMCT 226 (581)
Q Consensus 204 --Gs---~~~fl-----d~A~~~l~~gGlL~vT 226 (581)
|- |..|+ ..+-..|.+.|+..|-
T Consensus 383 ~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~in 415 (482)
T KOG2352|consen 383 SHGMQCPPPAFVAQVALQPVKMILPPRGMFIIN 415 (482)
T ss_pred cccCcCCchHHHHHHHHHHHhhccCccceEEEE
Confidence 21 33454 3444578899998764
No 454
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=35.92 E-value=20 Score=40.16 Aligned_cols=10 Identities=20% Similarity=0.610 Sum_probs=6.2
Q ss_pred EEEcCCCCce
Q 047386 313 VYQCIGCDSF 322 (581)
Q Consensus 313 v~~C~~C~~~ 322 (581)
.|.|..||..
T Consensus 7 ~y~C~~Cg~~ 16 (454)
T TIGR00416 7 KFVCQHCGAD 16 (454)
T ss_pred eEECCcCCCC
Confidence 4667777653
No 455
>PRK15029 arginine decarboxylase; Provisional
Probab=35.63 E-value=1.7e+02 Score=35.21 Aligned_cols=134 Identities=8% Similarity=0.119 Sum_probs=73.1
Q ss_pred EEEEEeCCHH--------HHHHHHHHHHHhCCCCCCcEEE-EehhHHHHHhhCCCcccEEeeC---CCCCCh----HhHH
Q 047386 148 QVVALDNDKA--------SVEACRRNIKFNGSVACSKVES-HLADARVYMLTHPKEFDVVDLD---PYGSPS----VFLD 211 (581)
Q Consensus 148 ~V~anD~s~~--------Ave~i~~Ni~~N~~~~~~~v~v-~~~DA~~~l~~~~~~fDvIdLD---PyGs~~----~fld 211 (581)
+|.++|-+.. ..+.+++-++..|.+ -+.+ .-.||..++.. ...||+|+|| |-.+-. .++.
T Consensus 2 kILIVDDD~~~~~~~~~~i~~~L~~~Le~~G~e---V~~a~s~~dAl~~l~~-~~~~DlVLLD~~LPd~dG~~~~~ell~ 77 (755)
T PRK15029 2 KVLIVESEFLHQDTWVGNAVERLADALSQQNVT---VIKSTSFDDGFAILSS-NEAIDCLMFSYQMEHPDEHQNVRQLIG 77 (755)
T ss_pred eEEEEeCCcccccchhHHHHHHHHHHHHHCCCE---EEEECCHHHHHHHHHh-cCCCcEEEEECCCCCCccchhHHHHHH
Confidence 4788888885 588899999988874 1122 23456666643 2479999999 332221 2222
Q ss_pred HHHHhcc-CCCeEEEEeccc--hhhcCCCcchhhhhccCccCCCccchhhhHHHHHHHHHHHHHHcCCceEE-E----ee
Q 047386 212 SAIQSVA-DGGMLMCTATDM--AVLCGGNGEVCYSKYGSYPLRGKYCHEMALRILLACIESHANRYKRYIEP-V----LS 283 (581)
Q Consensus 212 ~A~~~l~-~gGlL~vTaTD~--a~Lcg~~~~~c~rkYG~~~~k~~~~hE~~lRill~~i~~~Aa~~~r~i~P-l----ls 283 (581)
. ++... +=.+|.+|+.+. .-+... -++.-.++- |..|-....+.+.|...+.+|...+.| + ..
T Consensus 78 ~-IR~~~~~iPIIlLTar~~~~~~~~~~----~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~y~~~~~~pl~~aL~~ 148 (755)
T PRK15029 78 K-LHERQQNVPVFLLGDREKALAAMDRD----LLELVDEFA----WILEDTADFIAGRAVAAMTRYRQQLLPPLFSALMK 148 (755)
T ss_pred H-HHhhCCCCCEEEEEcCCcccccCCHH----HHHhhheEE----EecCCCHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 2 23222 236888887553 222111 111111111 223344444667788888889888776 3 33
Q ss_pred cccCceEEEEE
Q 047386 284 VQMDFYVRVFV 294 (581)
Q Consensus 284 ~s~dhY~RvfV 294 (581)
+....++...+
T Consensus 149 y~~~~~~~fH~ 159 (755)
T PRK15029 149 YSDIHEYSWAA 159 (755)
T ss_pred HHcCCCceeeC
Confidence 44444544443
No 456
>cd07377 WHTH_GntR Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators. This CD represents the winged HTH DNA-binding domain of the GntR (named after the gluconate operon repressor in Bacillus subtilis) family of bacterial transcriptional regulators and their putative homologs found in eukaryota and archaea. The GntR family has over 6000 members distributed among almost all bacterial species, which is comprised of FadR, HutC, MocR, YtrA, AraR, PlmA, and other subfamilies for the regulation of the most varied biological process. The monomeric proteins of the GntR family are characterized by two function domains: a small highly conserved winged helix-turn-helix prokaryotic DNA binding domain in the N-terminus, and a very diverse regulatory ligand-binding domain in the C-terminus for effector-binding/oligomerization, which provides the basis for the subfamily classifications. Binding of the effector to GntR-like transcriptional regulators is
Probab=35.60 E-value=62 Score=24.92 Aligned_cols=33 Identities=15% Similarity=0.107 Sum_probs=29.2
Q ss_pred eeeHHHHhhhcCCCCCCHHHHHHHHHHCCceEEe
Q 047386 413 FLSLHNLCSTLKCTSPSAVMFRSAVINAGYRVSG 446 (581)
Q Consensus 413 yy~l~~l~~~lk~~~P~~~~~~~aL~~~GY~aSr 446 (581)
..+..+||..++++.+.....+..|.+.|| +.+
T Consensus 25 ~~~~~~la~~~~is~~~v~~~l~~L~~~G~-i~~ 57 (66)
T cd07377 25 LPSERELAEELGVSRTTVREALRELEAEGL-VER 57 (66)
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCC-EEe
Confidence 446899999999999999999999999999 543
No 457
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=35.31 E-value=2.4e+02 Score=29.49 Aligned_cols=98 Identities=17% Similarity=0.254 Sum_probs=57.3
Q ss_pred CCCeEEE-ecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehh----HHHHHhhC-CCc
Q 047386 121 KPPRVLE-ALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLAD----ARVYMLTH-PKE 194 (581)
Q Consensus 121 ~~~~VLD-afsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~D----A~~~l~~~-~~~ 194 (581)
.+.+||= ..++.|...+.+|+. .|+++|++.+.++.-.+.+++ .|++ .-+.....+ +..++... ...
T Consensus 177 ~g~~vlI~g~g~vG~~~~~lak~-~G~~~v~~~~~~~~~~~~~~~----~g~~--~vi~~~~~~~~~~~~~i~~~~~~~~ 249 (361)
T cd08231 177 AGDTVVVQGAGPLGLYAVAAAKL-AGARRVIVIDGSPERLELARE----FGAD--ATIDIDELPDPQRRAIVRDITGGRG 249 (361)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH-cCCCeEEEEcCCHHHHHHHHH----cCCC--eEEcCcccccHHHHHHHHHHhCCCC
Confidence 3444443 345555556777886 488789999988877666642 3442 111111111 11232222 346
Q ss_pred ccEEeeCCCCCChHhHHHHHHhccCCCeEEEEe
Q 047386 195 FDVVDLDPYGSPSVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 195 fDvIdLDPyGs~~~fld~A~~~l~~gGlL~vTa 227 (581)
+|+| +|..|. ...+..++++++++|.++...
T Consensus 250 ~d~v-id~~g~-~~~~~~~~~~l~~~G~~v~~g 280 (361)
T cd08231 250 ADVV-IEASGH-PAAVPEGLELLRRGGTYVLVG 280 (361)
T ss_pred CcEE-EECCCC-hHHHHHHHHHhccCCEEEEEc
Confidence 8976 566654 356778899999999887643
No 458
>PLN02702 L-idonate 5-dehydrogenase
Probab=35.25 E-value=2.7e+02 Score=29.34 Aligned_cols=97 Identities=21% Similarity=0.252 Sum_probs=56.7
Q ss_pred CCeEEEe-cCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEE--EehhHHHHHhh----CCCc
Q 047386 122 PPRVLEA-LSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVES--HLADARVYMLT----HPKE 194 (581)
Q Consensus 122 ~~~VLDa-fsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v--~~~DA~~~l~~----~~~~ 194 (581)
+.+||=. -++.|..++.+|+. .|+..|+++|.++...+.+++ .+.+ ..+.+ ...+....+.. ....
T Consensus 182 g~~vlI~g~g~vG~~~~~~a~~-~G~~~v~~~~~~~~~~~~~~~----~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (364)
T PLN02702 182 ETNVLVMGAGPIGLVTMLAARA-FGAPRIVIVDVDDERLSVAKQ----LGAD--EIVLVSTNIEDVESEVEEIQKAMGGG 254 (364)
T ss_pred CCEEEEECCCHHHHHHHHHHHH-cCCCEEEEECCCHHHHHHHHH----hCCC--EEEecCcccccHHHHHHHHhhhcCCC
Confidence 4445443 23345556777886 588889999999877665543 3543 11111 11233222211 1245
Q ss_pred ccEEeeCCCCCChHhHHHHHHhccCCCeEEEEe
Q 047386 195 FDVVDLDPYGSPSVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 195 fDvIdLDPyGs~~~fld~A~~~l~~gGlL~vTa 227 (581)
+|+| +|.-|.+ ..+..++++|+++|.+....
T Consensus 255 ~d~v-id~~g~~-~~~~~~~~~l~~~G~~v~~g 285 (364)
T PLN02702 255 IDVS-FDCVGFN-KTMSTALEATRAGGKVCLVG 285 (364)
T ss_pred CCEE-EECCCCH-HHHHHHHHHHhcCCEEEEEc
Confidence 8866 5665532 46788899999999877654
No 459
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=35.19 E-value=3.1e+02 Score=29.85 Aligned_cols=101 Identities=18% Similarity=0.190 Sum_probs=54.7
Q ss_pred CCCCeEEEe-cCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEE
Q 047386 120 LKPPRVLEA-LSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVV 198 (581)
Q Consensus 120 ~~~~~VLDa-fsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvI 198 (581)
+.+.+|+=+ ....|..+++.++. -|+ .|++.|.++...+.+.... +. .+.....+...+.. .-..+|+|
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~-lGa-~V~v~d~~~~~~~~l~~~~---g~----~v~~~~~~~~~l~~-~l~~aDvV 234 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANG-LGA-TVTILDINIDRLRQLDAEF---GG----RIHTRYSNAYEIED-AVKRADLL 234 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHH-CCC-eEEEEECCHHHHHHHHHhc---Cc----eeEeccCCHHHHHH-HHccCCEE
Confidence 344555533 22244444555554 377 5999999998776554432 11 12221122222211 11368999
Q ss_pred eeCC--CCCChH--hHHHHHHhccCCCeEEEEeccc
Q 047386 199 DLDP--YGSPSV--FLDSAIQSVADGGMLMCTATDM 230 (581)
Q Consensus 199 dLDP--yGs~~~--fld~A~~~l~~gGlL~vTaTD~ 230 (581)
+.-- ++.+.| +....++.+++|++++-.+.|.
T Consensus 235 I~a~~~~g~~~p~lit~~~l~~mk~g~vIvDva~d~ 270 (370)
T TIGR00518 235 IGAVLIPGAKAPKLVSNSLVAQMKPGAVIVDVAIDQ 270 (370)
T ss_pred EEccccCCCCCCcCcCHHHHhcCCCCCEEEEEecCC
Confidence 8653 244333 3366778899999888766553
No 460
>PF14319 Zn_Tnp_IS91: Transposase zinc-binding domain
Probab=35.17 E-value=36 Score=30.87 Aligned_cols=15 Identities=20% Similarity=0.459 Sum_probs=11.1
Q ss_pred eEEEEcCCCCceeEe
Q 047386 311 SYVYQCIGCDSFHLQ 325 (581)
Q Consensus 311 g~v~~C~~C~~~~~q 325 (581)
+.++.|.+||.....
T Consensus 40 ~~~~~C~~Cg~~~~~ 54 (111)
T PF14319_consen 40 FHRYRCEDCGHEKIV 54 (111)
T ss_pred cceeecCCCCceEEe
Confidence 446899999976544
No 461
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=35.12 E-value=2.4e+02 Score=28.64 Aligned_cols=86 Identities=16% Similarity=0.186 Sum_probs=51.1
Q ss_pred CcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehh-HHHHHhhCCCcccEEeeCCCCCChH
Q 047386 130 SASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLAD-ARVYMLTHPKEFDVVDLDPYGSPSV 208 (581)
Q Consensus 130 sgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~D-A~~~l~~~~~~fDvIdLDPyGs~~~ 208 (581)
.+.|...+..|+. .|+ +|++.+.+++-.+.+++ .|+. .+-....+ ...+.......+|+|+ |..|. .
T Consensus 157 g~vg~~~~~~a~~-~g~-~v~~~~~~~~~~~~~~~----~g~~---~v~~~~~~~~~~~~~~~~~~~d~vl-d~~g~--~ 224 (326)
T cd08289 157 GGVGSLAVSILAK-LGY-EVVASTGKADAADYLKK----LGAK---EVIPREELQEESIKPLEKQRWAGAV-DPVGG--K 224 (326)
T ss_pred chHHHHHHHHHHH-CCC-eEEEEecCHHHHHHHHH----cCCC---EEEcchhHHHHHHHhhccCCcCEEE-ECCcH--H
Confidence 4455566667776 476 58888888877666643 3442 12111111 1112111134588864 88775 4
Q ss_pred hHHHHHHhccCCCeEEEEe
Q 047386 209 FLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 209 fld~A~~~l~~gGlL~vTa 227 (581)
-+..++++++.+|.++.-.
T Consensus 225 ~~~~~~~~l~~~G~~i~~g 243 (326)
T cd08289 225 TLAYLLSTLQYGGSVAVSG 243 (326)
T ss_pred HHHHHHHHhhcCCEEEEEe
Confidence 5677899999999876653
No 462
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=34.90 E-value=91 Score=28.34 Aligned_cols=46 Identities=17% Similarity=0.299 Sum_probs=28.5
Q ss_pred EecCccc--HHHHHHh-hhcCCccEEEEEeCCHHHHHHHHHH--HHHhCCC
Q 047386 127 EALSASG--LRALRYA-REVEGIGQVVALDNDKASVEACRRN--IKFNGSV 172 (581)
Q Consensus 127 DafsgSG--~rgIr~a-~E~~Ga~~V~anD~s~~Ave~i~~N--i~~N~~~ 172 (581)
|+-|..| ...+.++ +......+|+++|-+|..++.+++| +.+|+..
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~~ 51 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDKD 51 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTTS
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCCC
Confidence 6677888 4444432 1222346799999999999999999 8888653
No 463
>TIGR00354 polC DNA polymerase, archaeal type II, large subunit. This model represents the large subunit, DP2, of a two subunit novel Archaeal replicative DNA polymerase first characterized for Pyrococcus furiosus. Structure of DP2 appears to be organized as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit.
Probab=34.85 E-value=37 Score=41.29 Aligned_cols=24 Identities=13% Similarity=0.156 Sum_probs=15.9
Q ss_pred cchhhcCCCcchhhhhccCccCCC
Q 047386 229 DMAVLCGGNGEVCYSKYGSYPLRG 252 (581)
Q Consensus 229 D~a~Lcg~~~~~c~rkYG~~~~k~ 252 (581)
|+..+.-....+.|+..|++--|.
T Consensus 947 dTsdI~~Gp~~s~YktLgsM~dK~ 970 (1095)
T TIGR00354 947 DTSRIDAGPKVCAYKSLKTMQEKV 970 (1095)
T ss_pred CcchhhcCcchhhhhhhhhHHHHH
Confidence 555566556667777778776554
No 464
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=34.81 E-value=1.8e+02 Score=29.59 Aligned_cols=87 Identities=21% Similarity=0.199 Sum_probs=48.0
Q ss_pred CcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHH-HHhh-CCCcccEEeeCCCCCCh
Q 047386 130 SASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARV-YMLT-HPKEFDVVDLDPYGSPS 207 (581)
Q Consensus 130 sgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~-~l~~-~~~~fDvIdLDPyGs~~ 207 (581)
.+.|...+++|+. .|+. |++..-+.+-.+.+++ .+++ .-+.....+... ++.. .+..+|+|+ |..|.
T Consensus 150 g~ig~~~~~~a~~-~G~~-v~~~~~~~~~~~~~~~----~g~~--~~~~~~~~~~~~~i~~~~~~~~~d~v~-d~~g~-- 218 (324)
T cd08292 150 GAVGKLVAMLAAA-RGIN-VINLVRRDAGVAELRA----LGIG--PVVSTEQPGWQDKVREAAGGAPISVAL-DSVGG-- 218 (324)
T ss_pred cHHHHHHHHHHHH-CCCe-EEEEecCHHHHHHHHh----cCCC--EEEcCCCchHHHHHHHHhCCCCCcEEE-ECCCC--
Confidence 4466666777877 4775 4554444444444432 2442 111111112222 2221 134689886 87765
Q ss_pred HhHHHHHHhccCCCeEEEEe
Q 047386 208 VFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 208 ~fld~A~~~l~~gGlL~vTa 227 (581)
+.+..++++++.+|-++.-.
T Consensus 219 ~~~~~~~~~l~~~g~~v~~g 238 (324)
T cd08292 219 KLAGELLSLLGEGGTLVSFG 238 (324)
T ss_pred hhHHHHHHhhcCCcEEEEEe
Confidence 45678899999999887653
No 465
>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair]
Probab=34.76 E-value=34 Score=42.61 Aligned_cols=39 Identities=26% Similarity=0.636 Sum_probs=24.5
Q ss_pred EEcCCCCceeEeeccccccCCCCcccccCCCCCCCCCcCCCCCCcccccc
Q 047386 314 YQCIGCDSFHLQPVGRTASNKNNSVRYLPGFGPVVPQLCSDCGKKFNMGG 363 (581)
Q Consensus 314 ~~C~~C~~~~~q~lgr~~~~~~~~~~~~~~~~~~~~~~C~~Cg~~~~~~G 363 (581)
|.|+.|..+.+..=|+.- .|.. ..+..||.||.++.--|
T Consensus 915 Y~Cp~Cky~Ef~~d~svg----------sGfD-LpdK~CPkCg~pl~kDG 953 (1444)
T COG2176 915 YLCPECKYSEFIDDGSVG----------SGFD-LPDKDCPKCGTPLKKDG 953 (1444)
T ss_pred ccCCCCceeeeecCCCcC----------CCCC-CCCCCCCcCCCccccCC
Confidence 889999988776333321 1111 23457999998865444
No 466
>PRK05580 primosome assembly protein PriA; Validated
Probab=34.58 E-value=44 Score=39.32 Aligned_cols=16 Identities=25% Similarity=0.482 Sum_probs=11.1
Q ss_pred cccceEEEEcCCCCce
Q 047386 307 PLKLSYVYQCIGCDSF 322 (581)
Q Consensus 307 ~~k~g~v~~C~~C~~~ 322 (581)
...-|++..|+.|+..
T Consensus 384 C~~Cg~~~~C~~C~~~ 399 (679)
T PRK05580 384 CRDCGWVAECPHCDAS 399 (679)
T ss_pred hhhCcCccCCCCCCCc
Confidence 3456778888888753
No 467
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=34.54 E-value=39 Score=38.46 Aligned_cols=93 Identities=15% Similarity=0.170 Sum_probs=52.4
Q ss_pred eEEEecCcccHHHHHHhhhcCCccEE--EEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEE---
Q 047386 124 RVLEALSASGLRALRYAREVEGIGQV--VALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVV--- 198 (581)
Q Consensus 124 ~VLDafsgSG~rgIr~a~E~~Ga~~V--~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvI--- 198 (581)
.+||.-||+|.||-+.+. +++.-+ ..+|..+.-++.+-+ -|+.+ -+-++ +..-|.-....||+|
T Consensus 120 ~~LDvGcG~aSF~a~l~~--r~V~t~s~a~~d~~~~qvqfale----RGvpa--~~~~~---~s~rLPfp~~~fDmvHcs 188 (506)
T PF03141_consen 120 TALDVGCGVASFGAYLLE--RNVTTMSFAPNDEHEAQVQFALE----RGVPA--MIGVL---GSQRLPFPSNAFDMVHCS 188 (506)
T ss_pred EEEeccceeehhHHHHhh--CCceEEEcccccCCchhhhhhhh----cCcch--hhhhh---ccccccCCccchhhhhcc
Confidence 799999999999999988 476432 335666555544421 24431 01000 000011112467877
Q ss_pred -eeCCCCCCh-HhHHHHHHhccCCCeEEEEe
Q 047386 199 -DLDPYGSPS-VFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 199 -dLDPyGs~~-~fld~A~~~l~~gGlL~vTa 227 (581)
-+.|...-. -+|-..-+.|++||++..++
T Consensus 189 rc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ 219 (506)
T PF03141_consen 189 RCLIPWHPNDGFLLFEVDRVLRPGGYFVLSG 219 (506)
T ss_pred cccccchhcccceeehhhhhhccCceEEecC
Confidence 344533211 23444568899999999876
No 468
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=34.35 E-value=1.5e+02 Score=30.33 Aligned_cols=94 Identities=20% Similarity=0.228 Sum_probs=54.9
Q ss_pred CCeEEEecCc---ccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHH-HHhhCCCcccE
Q 047386 122 PPRVLEALSA---SGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARV-YMLTHPKEFDV 197 (581)
Q Consensus 122 ~~~VLDafsg---SG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~-~l~~~~~~fDv 197 (581)
+.+|| ...+ .|...+.+|+. .|+ +|++.+.++.-.+.+++.+ +.. ..+.....+... ++......+|+
T Consensus 146 ~~~vl-I~g~~g~ig~~~~~~a~~-~G~-~vi~~~~~~~~~~~~~~~~---g~~--~~~~~~~~~~~~~v~~~~~~~~d~ 217 (329)
T cd05288 146 GETVV-VSAAAGAVGSVVGQIAKL-LGA-RVVGIAGSDEKCRWLVEEL---GFD--AAINYKTPDLAEALKEAAPDGIDV 217 (329)
T ss_pred CCEEE-EecCcchHHHHHHHHHHH-cCC-EEEEEeCCHHHHHHHHhhc---CCc--eEEecCChhHHHHHHHhccCCceE
Confidence 34454 4444 45555667776 576 6889988887766665432 332 111111222222 22222346897
Q ss_pred EeeCCCCCChHhHHHHHHhccCCCeEEEE
Q 047386 198 VDLDPYGSPSVFLDSAIQSVADGGMLMCT 226 (581)
Q Consensus 198 IdLDPyGs~~~fld~A~~~l~~gGlL~vT 226 (581)
|+ |..|. ..+..++++++.+|.++.-
T Consensus 218 vi-~~~g~--~~~~~~~~~l~~~G~~v~~ 243 (329)
T cd05288 218 YF-DNVGG--EILDAALTLLNKGGRIALC 243 (329)
T ss_pred EE-EcchH--HHHHHHHHhcCCCceEEEE
Confidence 75 88774 5788889999999987653
No 469
>PF03444 HrcA_DNA-bdg: Winged helix-turn-helix transcription repressor, HrcA DNA-binding; InterPro: IPR005104 Prokaryotic cells have a defence mechanism against a sudden heat-shock stress. Commonly, they induce a set of proteins that protect cellular proteins from being denatured by heat. Among such proteins are the GroE and DnaK chaperones whose transcription is regulated by a heat-shock repressor protein HrcA. HrcA is a winged helix-turn-helix repressor that negatively regulates the transcription of dnaK and groE operons by binding the upstream CIRCE (controlling inverted repeat of chaperone expression) element. In Bacillus subtilis this element is a perfect 9 base pair inverted repeat separated by a 9 base pair spacer. The crystal structure of a heat-inducible transcriptional repressor, HrcA, from Thermotoga maritima has been reported at 2.2A resolution. HrcA is composed of three domains: an N-terminal winged helix-turn-helix domain (WHTH), a GAF-like domain, and an inserted dimerizing domain (IDD). The IDD shows a unique structural fold with an anti-parallel beta-sheet composed of three beta-strands sided by four alpha-helices. HrcA crystallises as a dimer, which is formed through hydrophobic contact between the IDDs and a limited contact that involves conserved residues between the GAF-like domains []. The structural studies suggest that the inactive form of HrcA is the dimer and this is converted to its DNA-binding form by interaction with GroEL, which binds to a conserved C-terminal sequence region [, ]. Comparison of the HrcA-CIRCE complexes from B. subtilis and Bacillus thermoglucosidasius (Geobacillus thermoglucosidasius), which grow at vastly different ranges of temperature shows that the thermostability profiles were consistent with the difference in the growth temperatures suggesting that HrcA can function as a thermosensor to detect temperature changes in cells []. Any increase in temperature causes the dissociation of the HrcA from the CIRCE complex with the concomitant activation of transcription of the groE and dnaK operons. This domain represents the winged helix-turn-helix DNA-binding domain which is located close to the N terminus of HrcA. This domain is also found at the N terminus of a set of uncharacterised proteins that have two C-terminal CBS domains. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent
Probab=34.27 E-value=56 Score=28.19 Aligned_cols=66 Identities=15% Similarity=0.139 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHhhCC--CCCceeeHHHHhhhcCCCCCCHHHHHHHHHHCCceEEecccCCCccccCCCHH
Q 047386 394 DRISAVLTTISEELP--DVPLFLSLHNLCSTLKCTSPSAVMFRSAVINAGYRVSGTHVNPLGLKTDAPMG 461 (581)
Q Consensus 394 ~ri~~lL~~~~eEl~--~~P~yy~l~~l~~~lk~~~P~~~~~~~aL~~~GY~aSrTH~~p~~iKTdAP~~ 461 (581)
.|-..+|.++.++.. ..| ..-..|+..++.++=.+...+..|.++||--+..|-+.+=+=|+.-+.
T Consensus 4 ~rq~~IL~alV~~Y~~~~~P--VgSk~ia~~l~~s~aTIRN~M~~Le~lGlve~~p~~s~GriPT~~aYr 71 (78)
T PF03444_consen 4 ERQREILKALVELYIETGEP--VGSKTIAEELGRSPATIRNEMADLEELGLVESQPHPSGGRIPTDKAYR 71 (78)
T ss_pred HHHHHHHHHHHHHHHhcCCC--cCHHHHHHHHCCChHHHHHHHHHHHHCCCccCCCCCCCCCCcCHHHHH
Confidence 355667777766521 223 334667888888887888999999999999998888777665554433
No 470
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=34.18 E-value=3.7e+02 Score=25.45 Aligned_cols=74 Identities=15% Similarity=0.170 Sum_probs=43.3
Q ss_pred EEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhh-CCCcccEEeeCCC--CCC-hHhHHHHHHhccCCCeE
Q 047386 148 QVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLT-HPKEFDVVDLDPY--GSP-SVFLDSAIQSVADGGML 223 (581)
Q Consensus 148 ~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~-~~~~fDvIdLDPy--Gs~-~~fld~A~~~l~~gGlL 223 (581)
+|..+|-++...+.+...+...+.. +. ...|....+.. ....||+|++|.- +.. ..++. .++....-.++
T Consensus 3 ~iLivdd~~~~~~~l~~~L~~~g~~----v~-~~~~~~~~~~~~~~~~~dlvild~~l~~~~g~~~~~-~lr~~~~~pvi 76 (225)
T PRK10529 3 NVLIVEDEQAIRRFLRTALEGDGMR----VF-EAETLQRGLLEAATRKPDLIILDLGLPDGDGIEFIR-DLRQWSAIPVI 76 (225)
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCE----EE-EeCCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHH-HHHcCCCCCEE
Confidence 5889999999999999998876642 22 23333333221 2346999999962 221 22222 23322334566
Q ss_pred EEEe
Q 047386 224 MCTA 227 (581)
Q Consensus 224 ~vTa 227 (581)
++|+
T Consensus 77 ~lt~ 80 (225)
T PRK10529 77 VLSA 80 (225)
T ss_pred EEEC
Confidence 6665
No 471
>PRK06484 short chain dehydrogenase; Validated
Probab=33.91 E-value=5.6e+02 Score=28.39 Aligned_cols=42 Identities=14% Similarity=0.138 Sum_probs=30.5
Q ss_pred CCCeEEEecCcccHHHHHHhhhc--CCccEEEEEeCCHHHHHHHHH
Q 047386 121 KPPRVLEALSASGLRALRYAREV--EGIGQVVALDNDKASVEACRR 164 (581)
Q Consensus 121 ~~~~VLDafsgSG~rgIr~a~E~--~Ga~~V~anD~s~~Ave~i~~ 164 (581)
.+..+| ...|+|.+|...+.++ .|+ .|++.+.++...+.+.+
T Consensus 268 ~~k~~l-ItGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~ 311 (520)
T PRK06484 268 SPRVVA-ITGGARGIGRAVADRFAAAGD-RLLIIDRDAEGAKKLAE 311 (520)
T ss_pred CCCEEE-EECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence 455555 7788888888877654 465 79999999887766554
No 472
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=33.84 E-value=2.7e+02 Score=29.49 Aligned_cols=94 Identities=16% Similarity=0.106 Sum_probs=52.3
Q ss_pred CCeEEE-ecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEee
Q 047386 122 PPRVLE-ALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDL 200 (581)
Q Consensus 122 ~~~VLD-afsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvIdL 200 (581)
+.+||= .-++.|...+.+|+. .|+. |++.+.+++..+.+. +..|.+ . .+...+...+.. ....+|+| +
T Consensus 181 g~~vlV~G~G~vG~~av~~Ak~-~G~~-vi~~~~~~~~~~~~~---~~~Ga~---~-~i~~~~~~~~~~-~~~~~D~v-i 249 (357)
T PLN02514 181 GLRGGILGLGGVGHMGVKIAKA-MGHH-VTVISSSDKKREEAL---EHLGAD---D-YLVSSDAAEMQE-AADSLDYI-I 249 (357)
T ss_pred CCeEEEEcccHHHHHHHHHHHH-CCCe-EEEEeCCHHHHHHHH---HhcCCc---E-EecCCChHHHHH-hcCCCcEE-E
Confidence 445553 334555566777786 5764 777887776544432 224542 1 122222222222 12357866 4
Q ss_pred CCCCCChHhHHHHHHhccCCCeEEEEe
Q 047386 201 DPYGSPSVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 201 DPyGs~~~fld~A~~~l~~gGlL~vTa 227 (581)
|--|.+ ..++.+++++++||.+.+-.
T Consensus 250 d~~g~~-~~~~~~~~~l~~~G~iv~~G 275 (357)
T PLN02514 250 DTVPVF-HPLEPYLSLLKLDGKLILMG 275 (357)
T ss_pred ECCCch-HHHHHHHHHhccCCEEEEEC
Confidence 665543 46677899999999877643
No 473
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=33.71 E-value=3e+02 Score=29.10 Aligned_cols=95 Identities=15% Similarity=0.174 Sum_probs=56.1
Q ss_pred CCeEEEecCcccHHH---HHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEeh--hHHHHHhh-CCCcc
Q 047386 122 PPRVLEALSASGLRA---LRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLA--DARVYMLT-HPKEF 195 (581)
Q Consensus 122 ~~~VLDafsgSG~rg---Ir~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~--DA~~~l~~-~~~~f 195 (581)
+.+||=. |.|..| +.+|+. .|+..|++.+.++.-.+.+++ .|+. ..+..... |....+.. ....+
T Consensus 184 g~~vlI~--g~g~vG~~a~~~a~~-~G~~~v~~~~~~~~~~~~~~~----~g~~--~~v~~~~~~~~~~~~l~~~~~~~~ 254 (365)
T cd05279 184 GSTCAVF--GLGGVGLSVIMGCKA-AGASRIIAVDINKDKFEKAKQ----LGAT--ECINPRDQDKPIVEVLTEMTDGGV 254 (365)
T ss_pred CCEEEEE--CCCHHHHHHHHHHHH-cCCCeEEEEeCCHHHHHHHHH----hCCC--eecccccccchHHHHHHHHhCCCC
Confidence 4555553 345554 555675 588889999988887776643 3432 11222222 32222222 13468
Q ss_pred cEEeeCCCCCChHhHHHHHHhcc-CCCeEEEEe
Q 047386 196 DVVDLDPYGSPSVFLDSAIQSVA-DGGMLMCTA 227 (581)
Q Consensus 196 DvIdLDPyGs~~~fld~A~~~l~-~gGlL~vTa 227 (581)
|+|+ |=.|. ...+..++++++ ++|.++...
T Consensus 255 d~vi-d~~g~-~~~~~~~~~~l~~~~G~~v~~g 285 (365)
T cd05279 255 DYAF-EVIGS-ADTLKQALDATRLGGGTSVVVG 285 (365)
T ss_pred cEEE-ECCCC-HHHHHHHHHHhccCCCEEEEEe
Confidence 9876 65554 356777899999 999987654
No 474
>COG1379 PHP family phosphoesterase with a Zn ribbon [General function prediction only]
Probab=33.66 E-value=46 Score=36.03 Aligned_cols=53 Identities=17% Similarity=0.221 Sum_probs=26.8
Q ss_pred CCCceeeHHHHhhhc----CC--CCCCHHHHHHHHHH-CCceEEecccCCCccccCCCHHHHHHHHHH
Q 047386 409 DVPLFLSLHNLCSTL----KC--TSPSAVMFRSAVIN-AGYRVSGTHVNPLGLKTDAPMGVIWDIMRC 469 (581)
Q Consensus 409 ~~P~yy~l~~l~~~l----k~--~~P~~~~~~~aL~~-~GY~aSrTH~~p~~iKTdAP~~~i~di~r~ 469 (581)
+.|.|+.+--|+-.. +. ++-....+.+.|.. -| +--.+=-|||.++|-+|.-.
T Consensus 296 ~RPPYlhliPLaeIi~~~~g~gi~tK~V~~~we~lv~~FG--------tEi~vLi~a~~e~La~V~~~ 355 (403)
T COG1379 296 HRPPYLHLIPLAEIISMALGKGITTKAVKRTWERLVRAFG--------TEIDVLIDAPIEELARVDPK 355 (403)
T ss_pred CCCCceecccHHHHHHHHhccceechhHHHHHHHHHHHhc--------chhhhHhcCCHHHHhhhhHH
Confidence 457788764444332 32 33344444444432 12 12234457888887766553
No 475
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=33.59 E-value=2.5e+02 Score=30.23 Aligned_cols=92 Identities=16% Similarity=0.136 Sum_probs=51.2
Q ss_pred CCeEEE-ecCcccHHHHHHhhhcCCccEEEEEeCCHHH-HHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhCCCcccEEe
Q 047386 122 PPRVLE-ALSASGLRALRYAREVEGIGQVVALDNDKAS-VEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVD 199 (581)
Q Consensus 122 ~~~VLD-afsgSG~rgIr~a~E~~Ga~~V~anD~s~~A-ve~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~~~~fDvId 199 (581)
+.+||= .-.+.|..++.+|+. .|+ +|++.|.+++. .+.+ +..|.+ .+ +...+...+.... ..+|+|+
T Consensus 179 g~~VlV~G~G~vG~~avq~Ak~-~Ga-~Vi~~~~~~~~~~~~a----~~lGa~---~~-i~~~~~~~v~~~~-~~~D~vi 247 (375)
T PLN02178 179 GKRLGVNGLGGLGHIAVKIGKA-FGL-RVTVISRSSEKEREAI----DRLGAD---SF-LVTTDSQKMKEAV-GTMDFII 247 (375)
T ss_pred CCEEEEEcccHHHHHHHHHHHH-cCC-eEEEEeCChHHhHHHH----HhCCCc---EE-EcCcCHHHHHHhh-CCCcEEE
Confidence 445543 334555566777776 577 48888887654 3333 234543 11 2111222222211 2578774
Q ss_pred eCCCCCChHhHHHHHHhccCCCeEEEE
Q 047386 200 LDPYGSPSVFLDSAIQSVADGGMLMCT 226 (581)
Q Consensus 200 LDPyGs~~~fld~A~~~l~~gGlL~vT 226 (581)
|.-|.+ .-+..+++++++||.++.-
T Consensus 248 -d~~G~~-~~~~~~~~~l~~~G~iv~v 272 (375)
T PLN02178 248 -DTVSAE-HALLPLFSLLKVSGKLVAL 272 (375)
T ss_pred -ECCCcH-HHHHHHHHhhcCCCEEEEE
Confidence 666653 3567789999999988764
No 476
>KOG2768 consensus Translation initiation factor 2, beta subunit (eIF-2beta) [Translation, ribosomal structure and biogenesis]
Probab=33.55 E-value=1.2e+02 Score=30.92 Aligned_cols=116 Identities=15% Similarity=0.206 Sum_probs=80.1
Q ss_pred CCCCCcccccccccccCCCCH---HHHHHHHHHhhh-cccCCCcHH-HHHHHHHHHHhhCCCCCceeeHHHHhhhcCCCC
Q 047386 353 SDCGKKFNMGGPIWSGRIHDQ---EWVNSILGEVKS-MKDRYPAYD-RISAVLTTISEELPDVPLFLSLHNLCSTLKCTS 427 (581)
Q Consensus 353 ~~Cg~~~~~~GPlW~GpLhd~---~fv~~ml~~~~~-~~~~~~t~~-ri~~lL~~~~eEl~~~P~yy~l~~l~~~lk~~~ 427 (581)
+.|....+..|+-|.|..-|. +.+.++...+.+ .++..+... .+..-..++++. ..--|.++.+||+.+|.+
T Consensus 59 ~~~e~~~~~~~~~~~g~e~dy~Y~ElL~rvf~ilreknpe~aGe~~k~v~~PPqvlReg--kkT~f~Nf~Dick~mhR~- 135 (231)
T KOG2768|consen 59 PDKEVRQNQQGVSWVGSEPDYTYYELLSRVFNILREKNPELAGEKRKFVMKPPQVLREG--KKTVFVNFADICKTMHRS- 135 (231)
T ss_pred hhhccccccccccccccCCCccHHHHHHHHHHHHHhcCchhcccccceeeCCHHHHhhc--cceeeeeHHHHHHHhccC-
Confidence 445445788889999999994 677777666543 344233222 344445555554 344689999999999986
Q ss_pred CCHHHHHHHHH-HCCceEEecccCCCccccCCCHHHHHHHHHHHHHh
Q 047386 428 PSAVMFRSAVI-NAGYRVSGTHVNPLGLKTDAPMGVIWDIMRCWVKN 473 (581)
Q Consensus 428 P~~~~~~~aL~-~~GY~aSrTH~~p~~iKTdAP~~~i~di~r~w~~~ 473 (581)
.+.+++.|. ++|=..|.---.-.-||-==-...|-.|+|.+++.
T Consensus 136 --pdHv~~FLlAELgTsGSidg~~rLviKGrfq~kq~e~VLRrYI~e 180 (231)
T KOG2768|consen 136 --PDHVMQFLLAELGTSGSIDGQQRLVIKGRFQQKQFENVLRRYIKE 180 (231)
T ss_pred --hHHHHHHHHHHhccccccCCCceEEEeccccHHHHHHHHHHHHHH
Confidence 456666554 57777776666666677777788999999999874
No 477
>PRK11823 DNA repair protein RadA; Provisional
Probab=33.46 E-value=24 Score=39.38 Aligned_cols=11 Identities=27% Similarity=0.670 Sum_probs=7.6
Q ss_pred EEEEcCCCCce
Q 047386 312 YVYQCIGCDSF 322 (581)
Q Consensus 312 ~v~~C~~C~~~ 322 (581)
..|.|..||+.
T Consensus 6 ~~y~C~~Cg~~ 16 (446)
T PRK11823 6 TAYVCQECGAE 16 (446)
T ss_pred CeEECCcCCCC
Confidence 45778888753
No 478
>TIGR00686 phnA alkylphosphonate utilization operon protein PhnA. The protein family includes an uncharacterized member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterized phosphonoacetate hydrolase designated PhnA by Kulakova, et al. (2001, 1997).
Probab=33.36 E-value=27 Score=31.84 Aligned_cols=13 Identities=23% Similarity=0.677 Sum_probs=9.5
Q ss_pred cCCCCCCcccccc
Q 047386 351 LCSDCGKKFNMGG 363 (581)
Q Consensus 351 ~C~~Cg~~~~~~G 363 (581)
.||+|+..+.-.+
T Consensus 21 iCpeC~~EW~~~~ 33 (109)
T TIGR00686 21 ICPSCLYEWNENE 33 (109)
T ss_pred ECccccccccccc
Confidence 5999988776543
No 479
>PRK07109 short chain dehydrogenase; Provisional
Probab=33.36 E-value=6e+02 Score=26.77 Aligned_cols=73 Identities=22% Similarity=0.160 Sum_probs=46.7
Q ss_pred EEEecCcccHHHHHHhhhc--CCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHH------HHHhh---CCC
Q 047386 125 VLEALSASGLRALRYAREV--EGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADAR------VYMLT---HPK 193 (581)
Q Consensus 125 VLDafsgSG~rgIr~a~E~--~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~------~~l~~---~~~ 193 (581)
+.=+..|||.+|...++++ .|+ +|++.+.++...+.+.+.++..+. ++.++..|+. .++.. .-.
T Consensus 10 ~vlITGas~gIG~~la~~la~~G~-~Vvl~~R~~~~l~~~~~~l~~~g~----~~~~v~~Dv~d~~~v~~~~~~~~~~~g 84 (334)
T PRK07109 10 VVVITGASAGVGRATARAFARRGA-KVVLLARGEEGLEALAAEIRAAGG----EALAVVADVADAEAVQAAADRAEEELG 84 (334)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCC----cEEEEEecCCCHHHHHHHHHHHHHHCC
Confidence 4445678888888776544 465 699999999988887777765443 3556666642 22211 113
Q ss_pred cccEEeeCC
Q 047386 194 EFDVVDLDP 202 (581)
Q Consensus 194 ~fDvIdLDP 202 (581)
..|+|+...
T Consensus 85 ~iD~lInnA 93 (334)
T PRK07109 85 PIDTWVNNA 93 (334)
T ss_pred CCCEEEECC
Confidence 578887554
No 480
>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B ....
Probab=33.03 E-value=27 Score=27.14 Aligned_cols=33 Identities=12% Similarity=0.118 Sum_probs=28.8
Q ss_pred eeHHHHhhhcCCCCCCHHHHHHHHHHCCceEEe
Q 047386 414 LSLHNLCSTLKCTSPSAVMFRSAVINAGYRVSG 446 (581)
Q Consensus 414 y~l~~l~~~lk~~~P~~~~~~~aL~~~GY~aSr 446 (581)
.++.+||..++++.+.+..++..|.+.||-.-.
T Consensus 22 ~t~~~la~~l~~~~~~vs~~v~~L~~~Glv~r~ 54 (62)
T PF12802_consen 22 LTQSELAERLGISKSTVSRIVKRLEKKGLVERE 54 (62)
T ss_dssp EEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEE
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 588999999999999999999999999996443
No 481
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=33.00 E-value=64 Score=33.47 Aligned_cols=34 Identities=26% Similarity=0.434 Sum_probs=22.6
Q ss_pred CCc-ccEEeeC-CCCCChHhHHHHHHhccCCCeEEEEe
Q 047386 192 PKE-FDVVDLD-PYGSPSVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 192 ~~~-fDvIdLD-PyGs~~~fld~A~~~l~~gGlL~vTa 227 (581)
... ||+|++| |+++....+. .++.+.+ |.|+||.
T Consensus 163 ~~~~~D~vIID~PP~~g~~d~~-i~~~~~~-g~viVt~ 198 (265)
T COG0489 163 LWGEYDYVIIDTPPGTGDADAT-VLQRIPD-GVVIVTT 198 (265)
T ss_pred hccCCCEEEEeCCCCchHHHHH-HHhccCC-eEEEEeC
Confidence 345 9999999 7887544333 2444555 8888875
No 482
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=32.91 E-value=36 Score=37.37 Aligned_cols=58 Identities=21% Similarity=0.475 Sum_probs=27.0
Q ss_pred CcCCCCCCccc-----------ccccccccCCCC-----HHHHHHHHHHhhhcccCCCcHHHHHHHH-HHHHhhCCC
Q 047386 350 QLCSDCGKKFN-----------MGGPIWSGRIHD-----QEWVNSILGEVKSMKDRYPAYDRISAVL-TTISEELPD 409 (581)
Q Consensus 350 ~~C~~Cg~~~~-----------~~GPlW~GpLhd-----~~fv~~ml~~~~~~~~~~~t~~ri~~lL-~~~~eEl~~ 409 (581)
..|+.||..+. -+.|.|.-+..+ ..|-+.+.+.+++.+. + ...++..++ +++.++|++
T Consensus 150 ~~Ce~cG~~~~~~~l~~p~~~~~g~~~~~r~e~~~ff~L~~~~~~L~~~l~~~~~-~-~~~~~~~~~~~~l~~~L~d 224 (391)
T PF09334_consen 150 DQCENCGRPLEPEELINPVCKICGSPPEVREEENYFFKLSKFRDQLREWLESNPD-F-PPPRVREIVRNWLKEGLPD 224 (391)
T ss_dssp TEETTTSSBEECCCSECEEETTTS-B-EEEEEEEEEE-GGGGHHHHHHHHHHSTT-S-SHHHHHHHHHHHHHT----
T ss_pred CcccCCCCCcccccccCCccccccccCccccceEEEEehHHhHHHHHHHHhcCCC-C-CChhHHHHHHHHhhcccCc
Confidence 45888887665 234666653332 2344444444443321 1 245666666 566665754
No 483
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=32.89 E-value=25 Score=32.95 Aligned_cols=35 Identities=20% Similarity=0.269 Sum_probs=22.5
Q ss_pred cceEEEEcCCCCceeEeeccccccCCCCcccccCCCCCCCCCcCCCCCCccccc
Q 047386 309 KLSYVYQCIGCDSFHLQPVGRTASNKNNSVRYLPGFGPVVPQLCSDCGKKFNMG 362 (581)
Q Consensus 309 k~g~v~~C~~C~~~~~q~lgr~~~~~~~~~~~~~~~~~~~~~~C~~Cg~~~~~~ 362 (581)
.+|.-..|+.||.... -|+| .+..||.||..+...
T Consensus 5 elGtKr~Cp~cg~kFY-DLnk------------------~p~vcP~cg~~~~~~ 39 (129)
T TIGR02300 5 DLGTKRICPNTGSKFY-DLNR------------------RPAVSPYTGEQFPPE 39 (129)
T ss_pred hhCccccCCCcCcccc-ccCC------------------CCccCCCcCCccCcc
Confidence 4777788999985321 1111 235799999877544
No 484
>PRK05993 short chain dehydrogenase; Provisional
Probab=32.72 E-value=5.3e+02 Score=25.95 Aligned_cols=38 Identities=24% Similarity=0.221 Sum_probs=27.3
Q ss_pred eEEEecCcccHHHHHHhhhc--CCccEEEEEeCCHHHHHHHH
Q 047386 124 RVLEALSASGLRALRYAREV--EGIGQVVALDNDKASVEACR 163 (581)
Q Consensus 124 ~VLDafsgSG~rgIr~a~E~--~Ga~~V~anD~s~~Ave~i~ 163 (581)
+|| +..|||..|..+++++ .|. +|++.+.+++..+.+.
T Consensus 6 ~vl-ItGasggiG~~la~~l~~~G~-~Vi~~~r~~~~~~~l~ 45 (277)
T PRK05993 6 SIL-ITGCSSGIGAYCARALQSDGW-RVFATCRKEEDVAALE 45 (277)
T ss_pred EEE-EeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH
Confidence 344 6678898888877654 465 6999999987765443
No 485
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=32.67 E-value=3.2e+02 Score=28.22 Aligned_cols=96 Identities=24% Similarity=0.277 Sum_probs=55.7
Q ss_pred CCeEE-EecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhh--CCCcccEE
Q 047386 122 PPRVL-EALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLT--HPKEFDVV 198 (581)
Q Consensus 122 ~~~VL-DafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~--~~~~fDvI 198 (581)
+.+|| ..-++.|...+++|+. .|..+|++.|.++.-.+.+++ .+.+ .-+.....+....+.. ....+|+|
T Consensus 167 g~~vlI~g~g~~g~~~~~~a~~-~G~~~v~~~~~~~~~~~~~~~----~g~~--~~v~~~~~~~~~~i~~~~~~~~~d~v 239 (345)
T cd08286 167 GDTVAIVGAGPVGLAALLTAQL-YSPSKIIMVDLDDNRLEVAKK----LGAT--HTVNSAKGDAIEQVLELTDGRGVDVV 239 (345)
T ss_pred CCEEEEECCCHHHHHHHHHHHH-cCCCeEEEEcCCHHHHHHHHH----hCCC--ceeccccccHHHHHHHHhCCCCCCEE
Confidence 34433 3335555566777776 575678889998877666653 3442 1122222332222221 12468987
Q ss_pred eeCCCCCChHhHHHHHHhccCCCeEEEE
Q 047386 199 DLDPYGSPSVFLDSAIQSVADGGMLMCT 226 (581)
Q Consensus 199 dLDPyGs~~~fld~A~~~l~~gGlL~vT 226 (581)
+ |-.|. ...++.++++|+.+|.++..
T Consensus 240 l-d~~g~-~~~~~~~~~~l~~~g~~v~~ 265 (345)
T cd08286 240 I-EAVGI-PATFELCQELVAPGGHIANV 265 (345)
T ss_pred E-ECCCC-HHHHHHHHHhccCCcEEEEe
Confidence 5 65443 34678888999999987654
No 486
>PF13730 HTH_36: Helix-turn-helix domain
Probab=32.65 E-value=61 Score=24.76 Aligned_cols=31 Identities=16% Similarity=0.138 Sum_probs=27.9
Q ss_pred ceeeHHHHhhhcCCCCCCHHHHHHHHHHCCc
Q 047386 412 LFLSLHNLCSTLKCTSPSAVMFRSAVINAGY 442 (581)
Q Consensus 412 ~yy~l~~l~~~lk~~~P~~~~~~~aL~~~GY 442 (581)
-|.+...||..++++.......+..|.+.||
T Consensus 24 ~~pS~~~la~~~g~s~~Tv~~~i~~L~~~G~ 54 (55)
T PF13730_consen 24 CFPSQETLAKDLGVSRRTVQRAIKELEEKGL 54 (55)
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCcC
Confidence 4569999999999998888999999999997
No 487
>smart00419 HTH_CRP helix_turn_helix, cAMP Regulatory protein.
Probab=32.49 E-value=33 Score=25.00 Aligned_cols=33 Identities=15% Similarity=0.084 Sum_probs=29.4
Q ss_pred ceeeHHHHhhhcCCCCCCHHHHHHHHHHCCceE
Q 047386 412 LFLSLHNLCSTLKCTSPSAVMFRSAVINAGYRV 444 (581)
Q Consensus 412 ~yy~l~~l~~~lk~~~P~~~~~~~aL~~~GY~a 444 (581)
+..+..+||..++++.+.....+..|.+.||=.
T Consensus 7 ~~~s~~~la~~l~~s~~tv~~~l~~L~~~g~l~ 39 (48)
T smart00419 7 LPLTRQEIAELLGLTRETVSRTLKRLEKEGLIS 39 (48)
T ss_pred eccCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 446788999999999999999999999999964
No 488
>PRK05867 short chain dehydrogenase; Provisional
Probab=32.41 E-value=4.9e+02 Score=25.54 Aligned_cols=76 Identities=21% Similarity=0.142 Sum_probs=46.9
Q ss_pred CCCeEEEecCcccHHHHHHhhhc--CCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHH------HHHhh--
Q 047386 121 KPPRVLEALSASGLRALRYAREV--EGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADAR------VYMLT-- 190 (581)
Q Consensus 121 ~~~~VLDafsgSG~rgIr~a~E~--~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~------~~l~~-- 190 (581)
.+.++| ...|+|..|...++.+ .|+ +|++.+.+++..+.+...++..+ .++.++..|.. .++..
T Consensus 8 ~~k~vl-VtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~----~~~~~~~~D~~~~~~~~~~~~~~~ 81 (253)
T PRK05867 8 HGKRAL-ITGASTGIGKRVALAYVEAGA-QVAIAARHLDALEKLADEIGTSG----GKVVPVCCDVSQHQQVTSMLDQVT 81 (253)
T ss_pred CCCEEE-EECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcC----CeEEEEEccCCCHHHHHHHHHHHH
Confidence 355555 5666777777776554 465 69999999988887777666543 24556665542 22221
Q ss_pred -CCCcccEEeeCC
Q 047386 191 -HPKEFDVVDLDP 202 (581)
Q Consensus 191 -~~~~fDvIdLDP 202 (581)
.-.+.|+++.-.
T Consensus 82 ~~~g~id~lv~~a 94 (253)
T PRK05867 82 AELGGIDIAVCNA 94 (253)
T ss_pred HHhCCCCEEEECC
Confidence 113678887654
No 489
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=32.35 E-value=1.3e+02 Score=27.71 Aligned_cols=30 Identities=23% Similarity=0.652 Sum_probs=19.6
Q ss_pred CcCCCCCCcccccc---cccccCCCC--HHHHHHHHH
Q 047386 350 QLCSDCGKKFNMGG---PIWSGRIHD--QEWVNSILG 381 (581)
Q Consensus 350 ~~C~~Cg~~~~~~G---PlW~GpLhd--~~fv~~ml~ 381 (581)
-.|++|+..+ -| +-|...|.+ .+||...+.
T Consensus 13 l~C~~C~t~i--~G~F~l~~~~~L~~E~~~Fi~~Fi~ 47 (113)
T PF09862_consen 13 LKCPSCGTEI--EGEFELPWFARLSPEQLEFIKLFIK 47 (113)
T ss_pred EEcCCCCCEE--EeeeccchhhcCCHHHHHHHHHHHH
Confidence 3699998644 34 346677765 578877653
No 490
>PRK10904 DNA adenine methylase; Provisional
Probab=32.29 E-value=27 Score=36.23 Aligned_cols=35 Identities=11% Similarity=0.189 Sum_probs=28.5
Q ss_pred CeEEEecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHH
Q 047386 123 PRVLEALSASGLRALRYAREVEGIGQVVALDNDKASVEAC 162 (581)
Q Consensus 123 ~~VLDafsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i 162 (581)
.+.+|+|+|+|...+.. . ...++.||+|++-+.+-
T Consensus 29 ~~yvEPF~GggaV~l~~--~---~~~~ilND~n~~Lin~y 63 (271)
T PRK10904 29 ECLIEPFVGAGSVFLNT--D---FSRYILADINSDLISLY 63 (271)
T ss_pred CcEEeccCCcceeeEec--C---CCeEEEEeCCHHHHHHH
Confidence 37999999999999853 2 35689999999988764
No 491
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=32.28 E-value=4.9e+02 Score=25.49 Aligned_cols=76 Identities=17% Similarity=0.194 Sum_probs=47.4
Q ss_pred CCCCeEEEecCcccHHHHHHhhhc--CCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHH------HHHhhC
Q 047386 120 LKPPRVLEALSASGLRALRYAREV--EGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADAR------VYMLTH 191 (581)
Q Consensus 120 ~~~~~VLDafsgSG~rgIr~a~E~--~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~------~~l~~~ 191 (581)
+.+.+|| +..|+|..|...++++ .|+ .|++.+.+++..+.+...++.++. ++.++..|.. .++...
T Consensus 9 ~~~k~il-ItGas~~IG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~----~~~~~~~Dl~~~~~~~~~~~~~ 82 (256)
T PRK06124 9 LAGQVAL-VTGSARGLGFEIARALAGAGA-HVLVNGRNAATLEAAVAALRAAGG----AAEALAFDIADEEAVAAAFARI 82 (256)
T ss_pred CCCCEEE-EECCCchHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHhcCC----ceEEEEccCCCHHHHHHHHHHH
Confidence 4456666 5667888888776544 476 699999998877777666665442 3556666543 223221
Q ss_pred ---CCcccEEeeC
Q 047386 192 ---PKEFDVVDLD 201 (581)
Q Consensus 192 ---~~~fDvIdLD 201 (581)
-.+.|+|+.-
T Consensus 83 ~~~~~~id~vi~~ 95 (256)
T PRK06124 83 DAEHGRLDILVNN 95 (256)
T ss_pred HHhcCCCCEEEEC
Confidence 1356888653
No 492
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=32.28 E-value=56 Score=26.84 Aligned_cols=47 Identities=15% Similarity=0.193 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhhCCCCCceeeHHHHhhhcCCC-CCCHHHHHHHHHHCCceE
Q 047386 395 RISAVLTTISEELPDVPLFLSLHNLCSTLKCT-SPSAVMFRSAVINAGYRV 444 (581)
Q Consensus 395 ri~~lL~~~~eEl~~~P~yy~l~~l~~~lk~~-~P~~~~~~~aL~~~GY~a 444 (581)
++...|..-.+|-.-+| ++.+||..+++. +......+.+|...||=-
T Consensus 10 ~vL~~I~~~~~~~G~~P---t~rEIa~~~g~~S~~tv~~~L~~Le~kG~I~ 57 (65)
T PF01726_consen 10 EVLEFIREYIEENGYPP---TVREIAEALGLKSTSTVQRHLKALERKGYIR 57 (65)
T ss_dssp HHHHHHHHHHHHHSS------HHHHHHHHTSSSHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHcCCCC---CHHHHHHHhCCCChHHHHHHHHHHHHCcCcc
Confidence 34444443344543234 789999999997 557788899999999954
No 493
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=31.86 E-value=3.2e+02 Score=28.24 Aligned_cols=98 Identities=23% Similarity=0.294 Sum_probs=56.2
Q ss_pred CCCeEEE-ecCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhh--CCCcccE
Q 047386 121 KPPRVLE-ALSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLT--HPKEFDV 197 (581)
Q Consensus 121 ~~~~VLD-afsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~--~~~~fDv 197 (581)
.+.+||- +-++.|...+.+|+. .|++.|++.+.++.-.+.+++ .|.+ .-+.....+....+.. ....+|+
T Consensus 163 ~g~~vlV~~~g~vg~~~~~la~~-~G~~~v~~~~~~~~~~~~~~~----lg~~--~~~~~~~~~~~~~~~~~~~~~~~d~ 235 (341)
T PRK05396 163 VGEDVLITGAGPIGIMAAAVAKH-VGARHVVITDVNEYRLELARK----MGAT--RAVNVAKEDLRDVMAELGMTEGFDV 235 (341)
T ss_pred CCCeEEEECCCHHHHHHHHHHHH-cCCCEEEEEcCCHHHHHHHHH----hCCc--EEecCccccHHHHHHHhcCCCCCCE
Confidence 3455554 223335566667776 588778888888776655443 3442 1111112232222322 1346886
Q ss_pred EeeCCCCCChHhHHHHHHhccCCCeEEEEe
Q 047386 198 VDLDPYGSPSVFLDSAIQSVADGGMLMCTA 227 (581)
Q Consensus 198 IdLDPyGs~~~fld~A~~~l~~gGlL~vTa 227 (581)
| +|..|. ...+..++++++++|.++...
T Consensus 236 v-~d~~g~-~~~~~~~~~~l~~~G~~v~~g 263 (341)
T PRK05396 236 G-LEMSGA-PSAFRQMLDNMNHGGRIAMLG 263 (341)
T ss_pred E-EECCCC-HHHHHHHHHHHhcCCEEEEEe
Confidence 6 566554 356777899999999987764
No 494
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=31.74 E-value=1.7e+02 Score=34.05 Aligned_cols=80 Identities=14% Similarity=0.095 Sum_probs=58.8
Q ss_pred CCCCCeEEEecCcccHHHHHHhhhc--CCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHH--hh--CC
Q 047386 119 QLKPPRVLEALSASGLRALRYAREV--EGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYM--LT--HP 192 (581)
Q Consensus 119 ~~~~~~VLDafsgSG~rgIr~a~E~--~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l--~~--~~ 192 (581)
-+.+++|| .-.|+|.+|=+..+++ -+.++++..|.|+.+...|..++...--. .++.++-+|+++.- .. ++
T Consensus 247 ~~~gK~vL-VTGagGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~~~~--~~~~~~igdVrD~~~~~~~~~~ 323 (588)
T COG1086 247 MLTGKTVL-VTGGGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREKFPE--LKLRFYIGDVRDRDRVERAMEG 323 (588)
T ss_pred HcCCCEEE-EeCCCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhhCCC--cceEEEecccccHHHHHHHHhc
Confidence 45676666 6789999999887765 46899999999999999999988864221 46788889886532 11 23
Q ss_pred CcccEEeeC
Q 047386 193 KEFDVVDLD 201 (581)
Q Consensus 193 ~~fDvIdLD 201 (581)
-+.|+|+--
T Consensus 324 ~kvd~VfHA 332 (588)
T COG1086 324 HKVDIVFHA 332 (588)
T ss_pred CCCceEEEh
Confidence 457888643
No 495
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=31.70 E-value=3.5e+02 Score=25.26 Aligned_cols=50 Identities=16% Similarity=0.223 Sum_probs=33.6
Q ss_pred EEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhh-CCCcccEEeeCC
Q 047386 148 QVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLT-HPKEFDVVDLDP 202 (581)
Q Consensus 148 ~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~-~~~~fDvIdLDP 202 (581)
+|..+|-++...+.+...++..+.. +. ...++...+.. ....||+|++|.
T Consensus 2 ~ilivdd~~~~~~~l~~~L~~~~~~----v~-~~~~~~~~~~~~~~~~~dlvild~ 52 (219)
T PRK10336 2 RILLIEDDMLIGDGIKTGLSKMGFS----VD-WFTQGRQGKEALYSAPYDAVILDL 52 (219)
T ss_pred eEEEEcCCHHHHHHHHHHHHHCCCE----EE-EeCCHHHHHHHHhhCCCCEEEEEC
Confidence 4788999999999999998876642 22 23343333321 134699999996
No 496
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=31.68 E-value=4.4e+02 Score=27.14 Aligned_cols=96 Identities=20% Similarity=0.275 Sum_probs=54.9
Q ss_pred CCeEEEe-cCcccHHHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHHHHhhC-CCcccEEe
Q 047386 122 PPRVLEA-LSASGLRALRYAREVEGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTH-PKEFDVVD 199 (581)
Q Consensus 122 ~~~VLDa-fsgSG~rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~~l~~~-~~~fDvId 199 (581)
+.+||-. -++.|...+..|+. .|+..|++.+.++...+.+++ .+.. .-+.........++... ...||+|+
T Consensus 160 ~~~vlI~g~g~~g~~~~~lA~~-~G~~~v~~~~~~~~~~~~l~~----~g~~--~~~~~~~~~~~~~~~~~~~~~~d~vl 232 (343)
T cd08236 160 GDTVVVIGAGTIGLLAIQWLKI-LGAKRVIAVDIDDEKLAVARE----LGAD--DTINPKEEDVEKVRELTEGRGADLVI 232 (343)
T ss_pred CCEEEEECCCHHHHHHHHHHHH-cCCCEEEEEcCCHHHHHHHHH----cCCC--EEecCccccHHHHHHHhCCCCCCEEE
Confidence 4456654 22335566777776 578778999888877666642 3432 11111111122222222 24589884
Q ss_pred eCCCCCChHhHHHHHHhccCCCeEEEE
Q 047386 200 LDPYGSPSVFLDSAIQSVADGGMLMCT 226 (581)
Q Consensus 200 LDPyGs~~~fld~A~~~l~~gGlL~vT 226 (581)
|-.|. ...+..++++|+++|.++..
T Consensus 233 -d~~g~-~~~~~~~~~~l~~~G~~v~~ 257 (343)
T cd08236 233 -EAAGS-PATIEQALALARPGGKVVLV 257 (343)
T ss_pred -ECCCC-HHHHHHHHHHhhcCCEEEEE
Confidence 55443 35677789999999986653
No 497
>PRK04023 DNA polymerase II large subunit; Validated
Probab=31.68 E-value=48 Score=40.66 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=16.9
Q ss_pred cchhhcCCCcchhhhhccCccCCCc
Q 047386 229 DMAVLCGGNGEVCYSKYGSYPLRGK 253 (581)
Q Consensus 229 D~a~Lcg~~~~~c~rkYG~~~~k~~ 253 (581)
|+..+......+.|+..|++--|.+
T Consensus 972 dTsdI~~Gp~~s~YktLgsM~dK~~ 996 (1121)
T PRK04023 972 DTSDIAAGPKVSAYKTLGSMEEKME 996 (1121)
T ss_pred CCchhhcCcchhhhhhhhhHHHHHH
Confidence 5666666666777888888766643
No 498
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=31.41 E-value=1.1e+02 Score=32.65 Aligned_cols=49 Identities=31% Similarity=0.375 Sum_probs=40.9
Q ss_pred CCCCCeEEEecCcccH---HHHHHhhhcCCccEEEEEeCCHHHHHHHHHHHHHhC
Q 047386 119 QLKPPRVLEALSASGL---RALRYAREVEGIGQVVALDNDKASVEACRRNIKFNG 170 (581)
Q Consensus 119 ~~~~~~VLDafsgSG~---rgIr~a~E~~Ga~~V~anD~s~~Ave~i~~Ni~~N~ 170 (581)
++.|..||=--+|+|+ .++++|+ +|+ +++..|+|.+..+.-.+.++.+|
T Consensus 35 ~v~g~~vLITGgg~GlGr~ialefa~--rg~-~~vl~Din~~~~~etv~~~~~~g 86 (300)
T KOG1201|consen 35 SVSGEIVLITGGGSGLGRLIALEFAK--RGA-KLVLWDINKQGNEETVKEIRKIG 86 (300)
T ss_pred hccCCEEEEeCCCchHHHHHHHHHHH--hCC-eEEEEeccccchHHHHHHHHhcC
Confidence 4557789999999884 6778888 577 79999999999999888888776
No 499
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=31.37 E-value=2e+02 Score=27.94 Aligned_cols=75 Identities=16% Similarity=0.150 Sum_probs=46.6
Q ss_pred CCeEEEecCcccHHHHHHhhhc--CCccEEEEEeCCHHHHHHHHHHHHHhCCCCCCcEEEEehhHHH------HHhh---
Q 047386 122 PPRVLEALSASGLRALRYAREV--EGIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARV------YMLT--- 190 (581)
Q Consensus 122 ~~~VLDafsgSG~rgIr~a~E~--~Ga~~V~anD~s~~Ave~i~~Ni~~N~~~~~~~v~v~~~DA~~------~l~~--- 190 (581)
+.+|| ...|||..|...++++ .|. .|++.+.++.....+...+...+ .++.++..|... ++..
T Consensus 6 ~~~il-ItGasg~iG~~l~~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~----~~~~~~~~Dl~~~~~~~~~~~~~~~ 79 (251)
T PRK12826 6 GRVAL-VTGAARGIGRAIAVRLAADGA-EVIVVDICGDDAAATAELVEAAG----GKARARQVDVRDRAALKAAVAAGVE 79 (251)
T ss_pred CCEEE-EcCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC----CeEEEEECCCCCHHHHHHHHHHHHH
Confidence 45677 7778898888776554 465 69999999877666666665443 235666665532 1211
Q ss_pred CCCcccEEeeCC
Q 047386 191 HPKEFDVVDLDP 202 (581)
Q Consensus 191 ~~~~fDvIdLDP 202 (581)
.-..+|+|+.-.
T Consensus 80 ~~~~~d~vi~~a 91 (251)
T PRK12826 80 DFGRLDILVANA 91 (251)
T ss_pred HhCCCCEEEECC
Confidence 113578876554
No 500
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=30.86 E-value=1.5e+02 Score=29.98 Aligned_cols=78 Identities=17% Similarity=0.109 Sum_probs=39.2
Q ss_pred HHHHHHhhhcCCccEEEEEeCCHHHH--HHHHHHHHHhCCCCCCcEEEEe-hhH---HHHHhhC-CCcccEEeeCCCCCC
Q 047386 134 LRALRYAREVEGIGQVVALDNDKASV--EACRRNIKFNGSVACSKVESHL-ADA---RVYMLTH-PKEFDVVDLDPYGSP 206 (581)
Q Consensus 134 ~rgIr~a~E~~Ga~~V~anD~s~~Av--e~i~~Ni~~N~~~~~~~v~v~~-~DA---~~~l~~~-~~~fDvIdLDPyGs~ 206 (581)
.++..+++ .| .+|..+|.||+.- .+..+-...+... ....... .+. ...+... ...||+|++|-++..
T Consensus 21 nLA~~la~--~G-~~VlliD~DpQ~s~~~w~~~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~yD~iiID~pp~~ 95 (231)
T PRK13849 21 GLCAALAS--DG-KRVALFEADENRPLTRWKENALRSNTWD--PACEVYAADELPLLEAAYEDAELQGFDYALADTHGGS 95 (231)
T ss_pred HHHHHHHh--CC-CcEEEEeCCCCCCHHHHHHhhccccCCC--ccceecCCCHHHHHHHHHHHHhhCCCCEEEEeCCCCc
Confidence 34455555 35 5799999998763 2222111111111 0111111 121 1122222 257999999977666
Q ss_pred hHhHHHHHHh
Q 047386 207 SVFLDSAIQS 216 (581)
Q Consensus 207 ~~fld~A~~~ 216 (581)
......|+.+
T Consensus 96 ~~~~~~al~~ 105 (231)
T PRK13849 96 SELNNTIIAS 105 (231)
T ss_pred cHHHHHHHHH
Confidence 6666666653
Done!